xref: /petsc/src/dm/impls/plex/plexdistribute.c (revision e600fa544e2bb197ca2af9b6e65ea465976dec56)
1af0996ceSBarry Smith #include <petsc/private/dmpleximpl.h>    /*I      "petscdmplex.h"   I*/
2c58f1c22SToby Isaac #include <petsc/private/dmlabelimpl.h>   /*I      "petscdmlabel.h"  I*/
370034214SMatthew G. Knepley 
43c1f0c11SLawrence Mitchell /*@C
53c1f0c11SLawrence Mitchell   DMPlexSetAdjacencyUser - Define adjacency in the mesh using a user-provided callback
63c1f0c11SLawrence Mitchell 
73c1f0c11SLawrence Mitchell   Input Parameters:
83c1f0c11SLawrence Mitchell + dm      - The DM object
93c1f0c11SLawrence Mitchell . user    - The user callback, may be NULL (to clear the callback)
103c1f0c11SLawrence Mitchell - ctx     - context for callback evaluation, may be NULL
113c1f0c11SLawrence Mitchell 
123c1f0c11SLawrence Mitchell   Level: advanced
133c1f0c11SLawrence Mitchell 
143c1f0c11SLawrence Mitchell   Notes:
153c1f0c11SLawrence Mitchell      The caller of DMPlexGetAdjacency may need to arrange that a large enough array is available for the adjacency.
163c1f0c11SLawrence Mitchell 
173c1f0c11SLawrence Mitchell      Any setting here overrides other configuration of DMPlex adjacency determination.
183c1f0c11SLawrence Mitchell 
19b0441da4SMatthew G. Knepley .seealso: DMSetAdjacency(), DMPlexDistribute(), DMPlexPreallocateOperator(), DMPlexGetAdjacency(), DMPlexGetAdjacencyUser()
203c1f0c11SLawrence Mitchell @*/
213c1f0c11SLawrence Mitchell PetscErrorCode DMPlexSetAdjacencyUser(DM dm,PetscErrorCode (*user)(DM,PetscInt,PetscInt*,PetscInt[],void*),void *ctx)
223c1f0c11SLawrence Mitchell {
233c1f0c11SLawrence Mitchell   DM_Plex *mesh = (DM_Plex *)dm->data;
243c1f0c11SLawrence Mitchell 
253c1f0c11SLawrence Mitchell   PetscFunctionBegin;
263c1f0c11SLawrence Mitchell   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
273c1f0c11SLawrence Mitchell   mesh->useradjacency = user;
283c1f0c11SLawrence Mitchell   mesh->useradjacencyctx = ctx;
293c1f0c11SLawrence Mitchell   PetscFunctionReturn(0);
303c1f0c11SLawrence Mitchell }
313c1f0c11SLawrence Mitchell 
323c1f0c11SLawrence Mitchell /*@C
333c1f0c11SLawrence Mitchell   DMPlexGetAdjacencyUser - get the user-defined adjacency callback
343c1f0c11SLawrence Mitchell 
353c1f0c11SLawrence Mitchell   Input Parameter:
363c1f0c11SLawrence Mitchell . dm      - The DM object
373c1f0c11SLawrence Mitchell 
383c1f0c11SLawrence Mitchell   Output Parameters:
396b867d5aSJose E. Roman + user    - The user callback
403c1f0c11SLawrence Mitchell - ctx     - context for callback evaluation
413c1f0c11SLawrence Mitchell 
423c1f0c11SLawrence Mitchell   Level: advanced
433c1f0c11SLawrence Mitchell 
44b0441da4SMatthew G. Knepley .seealso: DMSetAdjacency(), DMPlexDistribute(), DMPlexPreallocateOperator(), DMPlexGetAdjacency(), DMPlexSetAdjacencyUser()
453c1f0c11SLawrence Mitchell @*/
463c1f0c11SLawrence Mitchell PetscErrorCode DMPlexGetAdjacencyUser(DM dm, PetscErrorCode (**user)(DM,PetscInt,PetscInt*,PetscInt[],void*), void **ctx)
473c1f0c11SLawrence Mitchell {
483c1f0c11SLawrence Mitchell   DM_Plex *mesh = (DM_Plex *)dm->data;
493c1f0c11SLawrence Mitchell 
503c1f0c11SLawrence Mitchell   PetscFunctionBegin;
513c1f0c11SLawrence Mitchell   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
523c1f0c11SLawrence Mitchell   if (user) *user = mesh->useradjacency;
533c1f0c11SLawrence Mitchell   if (ctx) *ctx = mesh->useradjacencyctx;
543c1f0c11SLawrence Mitchell   PetscFunctionReturn(0);
553c1f0c11SLawrence Mitchell }
563c1f0c11SLawrence Mitchell 
5770034214SMatthew G. Knepley /*@
58a17985deSToby Isaac   DMPlexSetAdjacencyUseAnchors - Define adjacency in the mesh using the point-to-point constraints.
598b0b4c70SToby Isaac 
608b0b4c70SToby Isaac   Input Parameters:
618b0b4c70SToby Isaac + dm      - The DM object
625b317d89SToby Isaac - useAnchors - Flag to use the constraints.  If PETSC_TRUE, then constrained points are omitted from DMPlexGetAdjacency(), and their anchor points appear in their place.
638b0b4c70SToby Isaac 
648b0b4c70SToby Isaac   Level: intermediate
658b0b4c70SToby Isaac 
66b0441da4SMatthew G. Knepley .seealso: DMGetAdjacency(), DMSetAdjacency(), DMPlexDistribute(), DMPlexPreallocateOperator(), DMPlexSetAnchors()
678b0b4c70SToby Isaac @*/
685b317d89SToby Isaac PetscErrorCode DMPlexSetAdjacencyUseAnchors(DM dm, PetscBool useAnchors)
698b0b4c70SToby Isaac {
708b0b4c70SToby Isaac   DM_Plex *mesh = (DM_Plex *) dm->data;
718b0b4c70SToby Isaac 
728b0b4c70SToby Isaac   PetscFunctionBegin;
738b0b4c70SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
745b317d89SToby Isaac   mesh->useAnchors = useAnchors;
758b0b4c70SToby Isaac   PetscFunctionReturn(0);
768b0b4c70SToby Isaac }
778b0b4c70SToby Isaac 
788b0b4c70SToby Isaac /*@
79a17985deSToby Isaac   DMPlexGetAdjacencyUseAnchors - Query whether adjacency in the mesh uses the point-to-point constraints.
808b0b4c70SToby Isaac 
818b0b4c70SToby Isaac   Input Parameter:
828b0b4c70SToby Isaac . dm      - The DM object
838b0b4c70SToby Isaac 
848b0b4c70SToby Isaac   Output Parameter:
855b317d89SToby Isaac . useAnchors - Flag to use the closure.  If PETSC_TRUE, then constrained points are omitted from DMPlexGetAdjacency(), and their anchor points appear in their place.
868b0b4c70SToby Isaac 
878b0b4c70SToby Isaac   Level: intermediate
888b0b4c70SToby Isaac 
89b0441da4SMatthew G. Knepley .seealso: DMPlexSetAdjacencyUseAnchors(), DMSetAdjacency(), DMGetAdjacency(), DMPlexDistribute(), DMPlexPreallocateOperator(), DMPlexSetAnchors()
908b0b4c70SToby Isaac @*/
915b317d89SToby Isaac PetscErrorCode DMPlexGetAdjacencyUseAnchors(DM dm, PetscBool *useAnchors)
928b0b4c70SToby Isaac {
938b0b4c70SToby Isaac   DM_Plex *mesh = (DM_Plex *) dm->data;
948b0b4c70SToby Isaac 
958b0b4c70SToby Isaac   PetscFunctionBegin;
968b0b4c70SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
97064a246eSJacob Faibussowitsch   PetscValidBoolPointer(useAnchors, 2);
985b317d89SToby Isaac   *useAnchors = mesh->useAnchors;
998b0b4c70SToby Isaac   PetscFunctionReturn(0);
1008b0b4c70SToby Isaac }
1018b0b4c70SToby Isaac 
10270034214SMatthew G. Knepley static PetscErrorCode DMPlexGetAdjacency_Cone_Internal(DM dm, PetscInt p, PetscInt *adjSize, PetscInt adj[])
10370034214SMatthew G. Knepley {
10470034214SMatthew G. Knepley   const PetscInt *cone = NULL;
10570034214SMatthew G. Knepley   PetscInt        numAdj = 0, maxAdjSize = *adjSize, coneSize, c;
10670034214SMatthew G. Knepley   PetscErrorCode  ierr;
10770034214SMatthew G. Knepley 
10870034214SMatthew G. Knepley   PetscFunctionBeginHot;
10970034214SMatthew G. Knepley   ierr = DMPlexGetConeSize(dm, p, &coneSize);CHKERRQ(ierr);
11070034214SMatthew G. Knepley   ierr = DMPlexGetCone(dm, p, &cone);CHKERRQ(ierr);
1114b6b44bdSMatthew G. Knepley   for (c = 0; c <= coneSize; ++c) {
1124b6b44bdSMatthew G. Knepley     const PetscInt  point   = !c ? p : cone[c-1];
11370034214SMatthew G. Knepley     const PetscInt *support = NULL;
11470034214SMatthew G. Knepley     PetscInt        supportSize, s, q;
11570034214SMatthew G. Knepley 
1164b6b44bdSMatthew G. Knepley     ierr = DMPlexGetSupportSize(dm, point, &supportSize);CHKERRQ(ierr);
1174b6b44bdSMatthew G. Knepley     ierr = DMPlexGetSupport(dm, point, &support);CHKERRQ(ierr);
11870034214SMatthew G. Knepley     for (s = 0; s < supportSize; ++s) {
119527e7439SSatish Balay       for (q = 0; q < numAdj || ((void)(adj[numAdj++] = support[s]),0); ++q) {
12070034214SMatthew G. Knepley         if (support[s] == adj[q]) break;
12170034214SMatthew G. Knepley       }
1222c71b3e2SJacob Faibussowitsch       PetscCheckFalse(numAdj > maxAdjSize,PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid mesh exceeded adjacency allocation (%D)", maxAdjSize);
12370034214SMatthew G. Knepley     }
12470034214SMatthew G. Knepley   }
12570034214SMatthew G. Knepley   *adjSize = numAdj;
12670034214SMatthew G. Knepley   PetscFunctionReturn(0);
12770034214SMatthew G. Knepley }
12870034214SMatthew G. Knepley 
12970034214SMatthew G. Knepley static PetscErrorCode DMPlexGetAdjacency_Support_Internal(DM dm, PetscInt p, PetscInt *adjSize, PetscInt adj[])
13070034214SMatthew G. Knepley {
13170034214SMatthew G. Knepley   const PetscInt *support = NULL;
13270034214SMatthew G. Knepley   PetscInt        numAdj   = 0, maxAdjSize = *adjSize, supportSize, s;
13370034214SMatthew G. Knepley   PetscErrorCode  ierr;
13470034214SMatthew G. Knepley 
13570034214SMatthew G. Knepley   PetscFunctionBeginHot;
13670034214SMatthew G. Knepley   ierr = DMPlexGetSupportSize(dm, p, &supportSize);CHKERRQ(ierr);
13770034214SMatthew G. Knepley   ierr = DMPlexGetSupport(dm, p, &support);CHKERRQ(ierr);
1384b6b44bdSMatthew G. Knepley   for (s = 0; s <= supportSize; ++s) {
1394b6b44bdSMatthew G. Knepley     const PetscInt  point = !s ? p : support[s-1];
14070034214SMatthew G. Knepley     const PetscInt *cone  = NULL;
14170034214SMatthew G. Knepley     PetscInt        coneSize, c, q;
14270034214SMatthew G. Knepley 
1434b6b44bdSMatthew G. Knepley     ierr = DMPlexGetConeSize(dm, point, &coneSize);CHKERRQ(ierr);
1444b6b44bdSMatthew G. Knepley     ierr = DMPlexGetCone(dm, point, &cone);CHKERRQ(ierr);
14570034214SMatthew G. Knepley     for (c = 0; c < coneSize; ++c) {
146527e7439SSatish Balay       for (q = 0; q < numAdj || ((void)(adj[numAdj++] = cone[c]),0); ++q) {
14770034214SMatthew G. Knepley         if (cone[c] == adj[q]) break;
14870034214SMatthew G. Knepley       }
1492c71b3e2SJacob Faibussowitsch       PetscCheckFalse(numAdj > maxAdjSize,PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid mesh exceeded adjacency allocation (%D)", maxAdjSize);
15070034214SMatthew G. Knepley     }
15170034214SMatthew G. Knepley   }
15270034214SMatthew G. Knepley   *adjSize = numAdj;
15370034214SMatthew G. Knepley   PetscFunctionReturn(0);
15470034214SMatthew G. Knepley }
15570034214SMatthew G. Knepley 
15670034214SMatthew G. Knepley static PetscErrorCode DMPlexGetAdjacency_Transitive_Internal(DM dm, PetscInt p, PetscBool useClosure, PetscInt *adjSize, PetscInt adj[])
15770034214SMatthew G. Knepley {
15870034214SMatthew G. Knepley   PetscInt      *star = NULL;
15970034214SMatthew G. Knepley   PetscInt       numAdj = 0, maxAdjSize = *adjSize, starSize, s;
16070034214SMatthew G. Knepley   PetscErrorCode ierr;
16170034214SMatthew G. Knepley 
16270034214SMatthew G. Knepley   PetscFunctionBeginHot;
16370034214SMatthew G. Knepley   ierr = DMPlexGetTransitiveClosure(dm, p, useClosure, &starSize, &star);CHKERRQ(ierr);
16470034214SMatthew G. Knepley   for (s = 0; s < starSize*2; s += 2) {
16570034214SMatthew G. Knepley     const PetscInt *closure = NULL;
16670034214SMatthew G. Knepley     PetscInt        closureSize, c, q;
16770034214SMatthew G. Knepley 
16870034214SMatthew G. Knepley     ierr = DMPlexGetTransitiveClosure(dm, star[s], (PetscBool)!useClosure, &closureSize, (PetscInt**) &closure);CHKERRQ(ierr);
16970034214SMatthew G. Knepley     for (c = 0; c < closureSize*2; c += 2) {
170527e7439SSatish Balay       for (q = 0; q < numAdj || ((void)(adj[numAdj++] = closure[c]),0); ++q) {
17170034214SMatthew G. Knepley         if (closure[c] == adj[q]) break;
17270034214SMatthew G. Knepley       }
1732c71b3e2SJacob Faibussowitsch       PetscCheckFalse(numAdj > maxAdjSize,PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid mesh exceeded adjacency allocation (%D)", maxAdjSize);
17470034214SMatthew G. Knepley     }
17570034214SMatthew G. Knepley     ierr = DMPlexRestoreTransitiveClosure(dm, star[s], (PetscBool)!useClosure, &closureSize, (PetscInt**) &closure);CHKERRQ(ierr);
17670034214SMatthew G. Knepley   }
17770034214SMatthew G. Knepley   ierr = DMPlexRestoreTransitiveClosure(dm, p, useClosure, &starSize, &star);CHKERRQ(ierr);
17870034214SMatthew G. Knepley   *adjSize = numAdj;
17970034214SMatthew G. Knepley   PetscFunctionReturn(0);
18070034214SMatthew G. Knepley }
18170034214SMatthew G. Knepley 
1825b317d89SToby Isaac PetscErrorCode DMPlexGetAdjacency_Internal(DM dm, PetscInt p, PetscBool useCone, PetscBool useTransitiveClosure, PetscBool useAnchors, PetscInt *adjSize, PetscInt *adj[])
18370034214SMatthew G. Knepley {
18479bad331SMatthew G. Knepley   static PetscInt asiz = 0;
1858b0b4c70SToby Isaac   PetscInt maxAnchors = 1;
1868b0b4c70SToby Isaac   PetscInt aStart = -1, aEnd = -1;
1878b0b4c70SToby Isaac   PetscInt maxAdjSize;
1888b0b4c70SToby Isaac   PetscSection aSec = NULL;
1898b0b4c70SToby Isaac   IS aIS = NULL;
1908b0b4c70SToby Isaac   const PetscInt *anchors;
1913c1f0c11SLawrence Mitchell   DM_Plex *mesh = (DM_Plex *)dm->data;
19270034214SMatthew G. Knepley   PetscErrorCode  ierr;
19370034214SMatthew G. Knepley 
19470034214SMatthew G. Knepley   PetscFunctionBeginHot;
1955b317d89SToby Isaac   if (useAnchors) {
196a17985deSToby Isaac     ierr = DMPlexGetAnchors(dm,&aSec,&aIS);CHKERRQ(ierr);
1978b0b4c70SToby Isaac     if (aSec) {
1988b0b4c70SToby Isaac       ierr = PetscSectionGetMaxDof(aSec,&maxAnchors);CHKERRQ(ierr);
19924c766afSToby Isaac       maxAnchors = PetscMax(1,maxAnchors);
2008b0b4c70SToby Isaac       ierr = PetscSectionGetChart(aSec,&aStart,&aEnd);CHKERRQ(ierr);
2018b0b4c70SToby Isaac       ierr = ISGetIndices(aIS,&anchors);CHKERRQ(ierr);
2028b0b4c70SToby Isaac     }
2038b0b4c70SToby Isaac   }
20479bad331SMatthew G. Knepley   if (!*adj) {
20524c766afSToby Isaac     PetscInt depth, coneSeries, supportSeries, maxC, maxS, pStart, pEnd;
20679bad331SMatthew G. Knepley 
20724c766afSToby Isaac     ierr  = DMPlexGetChart(dm, &pStart,&pEnd);CHKERRQ(ierr);
20879bad331SMatthew G. Knepley     ierr  = DMPlexGetDepth(dm, &depth);CHKERRQ(ierr);
209412e9a14SMatthew G. Knepley     depth = PetscMax(depth, -depth);
21024c766afSToby Isaac     ierr  = DMPlexGetMaxSizes(dm, &maxC, &maxS);CHKERRQ(ierr);
21124c766afSToby Isaac     coneSeries    = (maxC > 1) ? ((PetscPowInt(maxC,depth+1)-1)/(maxC-1)) : depth+1;
21224c766afSToby Isaac     supportSeries = (maxS > 1) ? ((PetscPowInt(maxS,depth+1)-1)/(maxS-1)) : depth+1;
21324c766afSToby Isaac     asiz  = PetscMax(PetscPowInt(maxS,depth)*coneSeries,PetscPowInt(maxC,depth)*supportSeries);
2148b0b4c70SToby Isaac     asiz *= maxAnchors;
21524c766afSToby Isaac     asiz  = PetscMin(asiz,pEnd-pStart);
21679bad331SMatthew G. Knepley     ierr  = PetscMalloc1(asiz,adj);CHKERRQ(ierr);
21779bad331SMatthew G. Knepley   }
21879bad331SMatthew G. Knepley   if (*adjSize < 0) *adjSize = asiz;
2198b0b4c70SToby Isaac   maxAdjSize = *adjSize;
2203c1f0c11SLawrence Mitchell   if (mesh->useradjacency) {
22162f17a49SStefano Zampini     ierr = (*mesh->useradjacency)(dm, p, adjSize, *adj, mesh->useradjacencyctx);CHKERRQ(ierr);
2223c1f0c11SLawrence Mitchell   } else if (useTransitiveClosure) {
22379bad331SMatthew G. Knepley     ierr = DMPlexGetAdjacency_Transitive_Internal(dm, p, useCone, adjSize, *adj);CHKERRQ(ierr);
22470034214SMatthew G. Knepley   } else if (useCone) {
22579bad331SMatthew G. Knepley     ierr = DMPlexGetAdjacency_Cone_Internal(dm, p, adjSize, *adj);CHKERRQ(ierr);
22670034214SMatthew G. Knepley   } else {
22779bad331SMatthew G. Knepley     ierr = DMPlexGetAdjacency_Support_Internal(dm, p, adjSize, *adj);CHKERRQ(ierr);
22870034214SMatthew G. Knepley   }
2295b317d89SToby Isaac   if (useAnchors && aSec) {
2308b0b4c70SToby Isaac     PetscInt origSize = *adjSize;
2318b0b4c70SToby Isaac     PetscInt numAdj = origSize;
2328b0b4c70SToby Isaac     PetscInt i = 0, j;
2338b0b4c70SToby Isaac     PetscInt *orig = *adj;
2348b0b4c70SToby Isaac 
2358b0b4c70SToby Isaac     while (i < origSize) {
2368b0b4c70SToby Isaac       PetscInt p = orig[i];
2378b0b4c70SToby Isaac       PetscInt aDof = 0;
2388b0b4c70SToby Isaac 
2398b0b4c70SToby Isaac       if (p >= aStart && p < aEnd) {
2408b0b4c70SToby Isaac         ierr = PetscSectionGetDof(aSec,p,&aDof);CHKERRQ(ierr);
2418b0b4c70SToby Isaac       }
2428b0b4c70SToby Isaac       if (aDof) {
2438b0b4c70SToby Isaac         PetscInt aOff;
2448b0b4c70SToby Isaac         PetscInt s, q;
2458b0b4c70SToby Isaac 
2468b0b4c70SToby Isaac         for (j = i + 1; j < numAdj; j++) {
2478b0b4c70SToby Isaac           orig[j - 1] = orig[j];
2488b0b4c70SToby Isaac         }
2498b0b4c70SToby Isaac         origSize--;
2508b0b4c70SToby Isaac         numAdj--;
2518b0b4c70SToby Isaac         ierr = PetscSectionGetOffset(aSec,p,&aOff);CHKERRQ(ierr);
2528b0b4c70SToby Isaac         for (s = 0; s < aDof; ++s) {
253527e7439SSatish Balay           for (q = 0; q < numAdj || ((void)(orig[numAdj++] = anchors[aOff+s]),0); ++q) {
2548b0b4c70SToby Isaac             if (anchors[aOff+s] == orig[q]) break;
2558b0b4c70SToby Isaac           }
2562c71b3e2SJacob Faibussowitsch           PetscCheckFalse(numAdj > maxAdjSize,PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid mesh exceeded adjacency allocation (%D)", maxAdjSize);
2578b0b4c70SToby Isaac         }
2588b0b4c70SToby Isaac       }
2598b0b4c70SToby Isaac       else {
2608b0b4c70SToby Isaac         i++;
2618b0b4c70SToby Isaac       }
2628b0b4c70SToby Isaac     }
2638b0b4c70SToby Isaac     *adjSize = numAdj;
2648b0b4c70SToby Isaac     ierr = ISRestoreIndices(aIS,&anchors);CHKERRQ(ierr);
2658b0b4c70SToby Isaac   }
26670034214SMatthew G. Knepley   PetscFunctionReturn(0);
26770034214SMatthew G. Knepley }
26870034214SMatthew G. Knepley 
26970034214SMatthew G. Knepley /*@
27070034214SMatthew G. Knepley   DMPlexGetAdjacency - Return all points adjacent to the given point
27170034214SMatthew G. Knepley 
27270034214SMatthew G. Knepley   Input Parameters:
27370034214SMatthew G. Knepley + dm - The DM object
2746b867d5aSJose E. Roman - p  - The point
27570034214SMatthew G. Knepley 
2766b867d5aSJose E. Roman   Input/Output Parameters:
2776b867d5aSJose E. Roman + adjSize - The maximum size of adj if it is non-NULL, or PETSC_DETERMINE;
2786b867d5aSJose E. Roman             on output the number of adjacent points
2796b867d5aSJose E. Roman - adj - Either NULL so that the array is allocated, or an existing array with size adjSize;
2806b867d5aSJose E. Roman         on output contains the adjacent points
28170034214SMatthew G. Knepley 
28270034214SMatthew G. Knepley   Level: advanced
28370034214SMatthew G. Knepley 
28495452b02SPatrick Sanan   Notes:
28595452b02SPatrick Sanan     The user must PetscFree the adj array if it was not passed in.
28670034214SMatthew G. Knepley 
287b0441da4SMatthew G. Knepley .seealso: DMSetAdjacency(), DMPlexDistribute(), DMCreateMatrix(), DMPlexPreallocateOperator()
28870034214SMatthew G. Knepley @*/
28970034214SMatthew G. Knepley PetscErrorCode DMPlexGetAdjacency(DM dm, PetscInt p, PetscInt *adjSize, PetscInt *adj[])
29070034214SMatthew G. Knepley {
2911cf84007SMatthew G. Knepley   PetscBool      useCone, useClosure, useAnchors;
29270034214SMatthew G. Knepley   PetscErrorCode ierr;
29370034214SMatthew G. Knepley 
29470034214SMatthew G. Knepley   PetscFunctionBeginHot;
29570034214SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
29670034214SMatthew G. Knepley   PetscValidPointer(adjSize,3);
29770034214SMatthew G. Knepley   PetscValidPointer(adj,4);
298b0441da4SMatthew G. Knepley   ierr = DMGetBasicAdjacency(dm, &useCone, &useClosure);CHKERRQ(ierr);
2991cf84007SMatthew G. Knepley   ierr = DMPlexGetAdjacencyUseAnchors(dm, &useAnchors);CHKERRQ(ierr);
3001cf84007SMatthew G. Knepley   ierr = DMPlexGetAdjacency_Internal(dm, p, useCone, useClosure, useAnchors, adjSize, adj);CHKERRQ(ierr);
30170034214SMatthew G. Knepley   PetscFunctionReturn(0);
30270034214SMatthew G. Knepley }
30308633170SToby Isaac 
304b0a623aaSMatthew G. Knepley /*@
305b0a623aaSMatthew G. Knepley   DMPlexCreateTwoSidedProcessSF - Create an SF which just has process connectivity
306b0a623aaSMatthew G. Knepley 
307d083f849SBarry Smith   Collective on dm
308b0a623aaSMatthew G. Knepley 
309b0a623aaSMatthew G. Knepley   Input Parameters:
310b0a623aaSMatthew G. Knepley + dm      - The DM
3116b867d5aSJose E. Roman . sfPoint - The PetscSF which encodes point connectivity
3126b867d5aSJose E. Roman . rootRankSection -
3136b867d5aSJose E. Roman . rootRanks -
3146b867d5aSJose E. Roman . leftRankSection -
3156b867d5aSJose E. Roman - leafRanks -
316b0a623aaSMatthew G. Knepley 
317b0a623aaSMatthew G. Knepley   Output Parameters:
318b0a623aaSMatthew G. Knepley + processRanks - A list of process neighbors, or NULL
319b0a623aaSMatthew G. Knepley - sfProcess    - An SF encoding the two-sided process connectivity, or NULL
320b0a623aaSMatthew G. Knepley 
321b0a623aaSMatthew G. Knepley   Level: developer
322b0a623aaSMatthew G. Knepley 
323b0a623aaSMatthew G. Knepley .seealso: PetscSFCreate(), DMPlexCreateProcessSF()
324b0a623aaSMatthew G. Knepley @*/
325b0a623aaSMatthew G. Knepley PetscErrorCode DMPlexCreateTwoSidedProcessSF(DM dm, PetscSF sfPoint, PetscSection rootRankSection, IS rootRanks, PetscSection leafRankSection, IS leafRanks, IS *processRanks, PetscSF *sfProcess)
326b0a623aaSMatthew G. Knepley {
327b0a623aaSMatthew G. Knepley   const PetscSFNode *remotePoints;
328b0a623aaSMatthew G. Knepley   PetscInt          *localPointsNew;
329b0a623aaSMatthew G. Knepley   PetscSFNode       *remotePointsNew;
330b0a623aaSMatthew G. Knepley   const PetscInt    *nranks;
331b0a623aaSMatthew G. Knepley   PetscInt          *ranksNew;
332b0a623aaSMatthew G. Knepley   PetscBT            neighbors;
333b0a623aaSMatthew G. Knepley   PetscInt           pStart, pEnd, p, numLeaves, l, numNeighbors, n;
3349852e123SBarry Smith   PetscMPIInt        size, proc, rank;
335b0a623aaSMatthew G. Knepley   PetscErrorCode     ierr;
336b0a623aaSMatthew G. Knepley 
337b0a623aaSMatthew G. Knepley   PetscFunctionBegin;
338b0a623aaSMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
339b0a623aaSMatthew G. Knepley   PetscValidHeaderSpecific(sfPoint, PETSCSF_CLASSID, 2);
340064a246eSJacob Faibussowitsch   if (processRanks) {PetscValidPointer(processRanks, 7);}
341064a246eSJacob Faibussowitsch   if (sfProcess)    {PetscValidPointer(sfProcess, 8);}
342ffc4695bSBarry Smith   ierr = MPI_Comm_size(PetscObjectComm((PetscObject) dm), &size);CHKERRMPI(ierr);
343ffc4695bSBarry Smith   ierr = MPI_Comm_rank(PetscObjectComm((PetscObject) dm), &rank);CHKERRMPI(ierr);
344b0a623aaSMatthew G. Knepley   ierr = PetscSFGetGraph(sfPoint, NULL, &numLeaves, NULL, &remotePoints);CHKERRQ(ierr);
3459852e123SBarry Smith   ierr = PetscBTCreate(size, &neighbors);CHKERRQ(ierr);
3469852e123SBarry Smith   ierr = PetscBTMemzero(size, neighbors);CHKERRQ(ierr);
347b0a623aaSMatthew G. Knepley   /* Compute root-to-leaf process connectivity */
348b0a623aaSMatthew G. Knepley   ierr = PetscSectionGetChart(rootRankSection, &pStart, &pEnd);CHKERRQ(ierr);
349b0a623aaSMatthew G. Knepley   ierr = ISGetIndices(rootRanks, &nranks);CHKERRQ(ierr);
350b0a623aaSMatthew G. Knepley   for (p = pStart; p < pEnd; ++p) {
351b0a623aaSMatthew G. Knepley     PetscInt ndof, noff, n;
352b0a623aaSMatthew G. Knepley 
353b0a623aaSMatthew G. Knepley     ierr = PetscSectionGetDof(rootRankSection, p, &ndof);CHKERRQ(ierr);
354b0a623aaSMatthew G. Knepley     ierr = PetscSectionGetOffset(rootRankSection, p, &noff);CHKERRQ(ierr);
355302440fdSBarry Smith     for (n = 0; n < ndof; ++n) {ierr = PetscBTSet(neighbors, nranks[noff+n]);CHKERRQ(ierr);}
356b0a623aaSMatthew G. Knepley   }
357b0a623aaSMatthew G. Knepley   ierr = ISRestoreIndices(rootRanks, &nranks);CHKERRQ(ierr);
358b0a623aaSMatthew G. Knepley   /* Compute leaf-to-neighbor process connectivity */
359b0a623aaSMatthew G. Knepley   ierr = PetscSectionGetChart(leafRankSection, &pStart, &pEnd);CHKERRQ(ierr);
360b0a623aaSMatthew G. Knepley   ierr = ISGetIndices(leafRanks, &nranks);CHKERRQ(ierr);
361b0a623aaSMatthew G. Knepley   for (p = pStart; p < pEnd; ++p) {
362b0a623aaSMatthew G. Knepley     PetscInt ndof, noff, n;
363b0a623aaSMatthew G. Knepley 
364b0a623aaSMatthew G. Knepley     ierr = PetscSectionGetDof(leafRankSection, p, &ndof);CHKERRQ(ierr);
365b0a623aaSMatthew G. Knepley     ierr = PetscSectionGetOffset(leafRankSection, p, &noff);CHKERRQ(ierr);
366302440fdSBarry Smith     for (n = 0; n < ndof; ++n) {ierr = PetscBTSet(neighbors, nranks[noff+n]);CHKERRQ(ierr);}
367b0a623aaSMatthew G. Knepley   }
368b0a623aaSMatthew G. Knepley   ierr = ISRestoreIndices(leafRanks, &nranks);CHKERRQ(ierr);
369b0a623aaSMatthew G. Knepley   /* Compute leaf-to-root process connectivity */
370b0a623aaSMatthew G. Knepley   for (l = 0; l < numLeaves; ++l) {PetscBTSet(neighbors, remotePoints[l].rank);}
371b0a623aaSMatthew G. Knepley   /* Calculate edges */
372b0a623aaSMatthew G. Knepley   PetscBTClear(neighbors, rank);
3739852e123SBarry Smith   for (proc = 0, numNeighbors = 0; proc < size; ++proc) {if (PetscBTLookup(neighbors, proc)) ++numNeighbors;}
374b0a623aaSMatthew G. Knepley   ierr = PetscMalloc1(numNeighbors, &ranksNew);CHKERRQ(ierr);
375b0a623aaSMatthew G. Knepley   ierr = PetscMalloc1(numNeighbors, &localPointsNew);CHKERRQ(ierr);
376b0a623aaSMatthew G. Knepley   ierr = PetscMalloc1(numNeighbors, &remotePointsNew);CHKERRQ(ierr);
3779852e123SBarry Smith   for (proc = 0, n = 0; proc < size; ++proc) {
378b0a623aaSMatthew G. Knepley     if (PetscBTLookup(neighbors, proc)) {
379b0a623aaSMatthew G. Knepley       ranksNew[n]              = proc;
380b0a623aaSMatthew G. Knepley       localPointsNew[n]        = proc;
381b0a623aaSMatthew G. Knepley       remotePointsNew[n].index = rank;
382b0a623aaSMatthew G. Knepley       remotePointsNew[n].rank  = proc;
383b0a623aaSMatthew G. Knepley       ++n;
384b0a623aaSMatthew G. Knepley     }
385b0a623aaSMatthew G. Knepley   }
386b0a623aaSMatthew G. Knepley   ierr = PetscBTDestroy(&neighbors);CHKERRQ(ierr);
387b0a623aaSMatthew G. Knepley   if (processRanks) {ierr = ISCreateGeneral(PetscObjectComm((PetscObject)dm), numNeighbors, ranksNew, PETSC_OWN_POINTER, processRanks);CHKERRQ(ierr);}
388b0a623aaSMatthew G. Knepley   else              {ierr = PetscFree(ranksNew);CHKERRQ(ierr);}
389b0a623aaSMatthew G. Knepley   if (sfProcess) {
390b0a623aaSMatthew G. Knepley     ierr = PetscSFCreate(PetscObjectComm((PetscObject)dm), sfProcess);CHKERRQ(ierr);
391b0a623aaSMatthew G. Knepley     ierr = PetscObjectSetName((PetscObject) *sfProcess, "Two-Sided Process SF");CHKERRQ(ierr);
392b0a623aaSMatthew G. Knepley     ierr = PetscSFSetFromOptions(*sfProcess);CHKERRQ(ierr);
3939852e123SBarry Smith     ierr = PetscSFSetGraph(*sfProcess, size, numNeighbors, localPointsNew, PETSC_OWN_POINTER, remotePointsNew, PETSC_OWN_POINTER);CHKERRQ(ierr);
394b0a623aaSMatthew G. Knepley   }
395b0a623aaSMatthew G. Knepley   PetscFunctionReturn(0);
396b0a623aaSMatthew G. Knepley }
397b0a623aaSMatthew G. Knepley 
398b0a623aaSMatthew G. Knepley /*@
399b0a623aaSMatthew G. Knepley   DMPlexDistributeOwnership - Compute owner information for shared points. This basically gets two-sided for an SF.
400b0a623aaSMatthew G. Knepley 
401d083f849SBarry Smith   Collective on dm
402b0a623aaSMatthew G. Knepley 
403b0a623aaSMatthew G. Knepley   Input Parameter:
404b0a623aaSMatthew G. Knepley . dm - The DM
405b0a623aaSMatthew G. Knepley 
406b0a623aaSMatthew G. Knepley   Output Parameters:
407b0a623aaSMatthew G. Knepley + rootSection - The number of leaves for a given root point
408b0a623aaSMatthew G. Knepley . rootrank    - The rank of each edge into the root point
409b0a623aaSMatthew G. Knepley . leafSection - The number of processes sharing a given leaf point
410b0a623aaSMatthew G. Knepley - leafrank    - The rank of each process sharing a leaf point
411b0a623aaSMatthew G. Knepley 
412b0a623aaSMatthew G. Knepley   Level: developer
413b0a623aaSMatthew G. Knepley 
414dccdeccaSVaclav Hapla .seealso: DMPlexCreateOverlapLabel(), DMPlexDistribute(), DMPlexDistributeOverlap()
415b0a623aaSMatthew G. Knepley @*/
416b0a623aaSMatthew G. Knepley PetscErrorCode DMPlexDistributeOwnership(DM dm, PetscSection rootSection, IS *rootrank, PetscSection leafSection, IS *leafrank)
417b0a623aaSMatthew G. Knepley {
418b0a623aaSMatthew G. Knepley   MPI_Comm        comm;
419b0a623aaSMatthew G. Knepley   PetscSF         sfPoint;
420b0a623aaSMatthew G. Knepley   const PetscInt *rootdegree;
421b0a623aaSMatthew G. Knepley   PetscInt       *myrank, *remoterank;
422b0a623aaSMatthew G. Knepley   PetscInt        pStart, pEnd, p, nedges;
423b0a623aaSMatthew G. Knepley   PetscMPIInt     rank;
424b0a623aaSMatthew G. Knepley   PetscErrorCode  ierr;
425b0a623aaSMatthew G. Knepley 
426b0a623aaSMatthew G. Knepley   PetscFunctionBegin;
427b0a623aaSMatthew G. Knepley   ierr = PetscObjectGetComm((PetscObject) dm, &comm);CHKERRQ(ierr);
428ffc4695bSBarry Smith   ierr = MPI_Comm_rank(comm, &rank);CHKERRMPI(ierr);
429b0a623aaSMatthew G. Knepley   ierr = DMPlexGetChart(dm, &pStart, &pEnd);CHKERRQ(ierr);
430b0a623aaSMatthew G. Knepley   ierr = DMGetPointSF(dm, &sfPoint);CHKERRQ(ierr);
431b0a623aaSMatthew G. Knepley   /* Compute number of leaves for each root */
432b0a623aaSMatthew G. Knepley   ierr = PetscObjectSetName((PetscObject) rootSection, "Root Section");CHKERRQ(ierr);
433b0a623aaSMatthew G. Knepley   ierr = PetscSectionSetChart(rootSection, pStart, pEnd);CHKERRQ(ierr);
434b0a623aaSMatthew G. Knepley   ierr = PetscSFComputeDegreeBegin(sfPoint, &rootdegree);CHKERRQ(ierr);
435b0a623aaSMatthew G. Knepley   ierr = PetscSFComputeDegreeEnd(sfPoint, &rootdegree);CHKERRQ(ierr);
436b0a623aaSMatthew G. Knepley   for (p = pStart; p < pEnd; ++p) {ierr = PetscSectionSetDof(rootSection, p, rootdegree[p-pStart]);CHKERRQ(ierr);}
437b0a623aaSMatthew G. Knepley   ierr = PetscSectionSetUp(rootSection);CHKERRQ(ierr);
438b0a623aaSMatthew G. Knepley   /* Gather rank of each leaf to root */
439b0a623aaSMatthew G. Knepley   ierr = PetscSectionGetStorageSize(rootSection, &nedges);CHKERRQ(ierr);
440b0a623aaSMatthew G. Knepley   ierr = PetscMalloc1(pEnd-pStart, &myrank);CHKERRQ(ierr);
441b0a623aaSMatthew G. Knepley   ierr = PetscMalloc1(nedges,  &remoterank);CHKERRQ(ierr);
442b0a623aaSMatthew G. Knepley   for (p = 0; p < pEnd-pStart; ++p) myrank[p] = rank;
443b0a623aaSMatthew G. Knepley   ierr = PetscSFGatherBegin(sfPoint, MPIU_INT, myrank, remoterank);CHKERRQ(ierr);
444b0a623aaSMatthew G. Knepley   ierr = PetscSFGatherEnd(sfPoint, MPIU_INT, myrank, remoterank);CHKERRQ(ierr);
445b0a623aaSMatthew G. Knepley   ierr = PetscFree(myrank);CHKERRQ(ierr);
446b0a623aaSMatthew G. Knepley   ierr = ISCreateGeneral(comm, nedges, remoterank, PETSC_OWN_POINTER, rootrank);CHKERRQ(ierr);
447b0a623aaSMatthew G. Knepley   /* Distribute remote ranks to leaves */
448b0a623aaSMatthew G. Knepley   ierr = PetscObjectSetName((PetscObject) leafSection, "Leaf Section");CHKERRQ(ierr);
449b0a623aaSMatthew G. Knepley   ierr = DMPlexDistributeFieldIS(dm, sfPoint, rootSection, *rootrank, leafSection, leafrank);CHKERRQ(ierr);
450b0a623aaSMatthew G. Knepley   PetscFunctionReturn(0);
451b0a623aaSMatthew G. Knepley }
452b0a623aaSMatthew G. Knepley 
453278397a0SMatthew G. Knepley /*@C
454dccdeccaSVaclav Hapla   DMPlexCreateOverlapLabel - Compute owner information for shared points. This basically gets two-sided for an SF.
455b0a623aaSMatthew G. Knepley 
456d083f849SBarry Smith   Collective on dm
457b0a623aaSMatthew G. Knepley 
458b0a623aaSMatthew G. Knepley   Input Parameters:
459b0a623aaSMatthew G. Knepley + dm          - The DM
46024d039d7SMichael Lange . levels      - Number of overlap levels
461b0a623aaSMatthew G. Knepley . rootSection - The number of leaves for a given root point
462b0a623aaSMatthew G. Knepley . rootrank    - The rank of each edge into the root point
463b0a623aaSMatthew G. Knepley . leafSection - The number of processes sharing a given leaf point
464b0a623aaSMatthew G. Knepley - leafrank    - The rank of each process sharing a leaf point
465b0a623aaSMatthew G. Knepley 
466064ec1f3Sprj-   Output Parameter:
467b4ec6ac8SBarry Smith . ovLabel     - DMLabel containing remote overlap contributions as point/rank pairings
468b0a623aaSMatthew G. Knepley 
469b0a623aaSMatthew G. Knepley   Level: developer
470b0a623aaSMatthew G. Knepley 
4711fd9873aSMichael Lange .seealso: DMPlexDistributeOwnership(), DMPlexDistribute()
472b0a623aaSMatthew G. Knepley @*/
473dccdeccaSVaclav Hapla PetscErrorCode DMPlexCreateOverlapLabel(DM dm, PetscInt levels, PetscSection rootSection, IS rootrank, PetscSection leafSection, IS leafrank, DMLabel *ovLabel)
474b0a623aaSMatthew G. Knepley {
475e540f424SMichael Lange   MPI_Comm           comm;
476b0a623aaSMatthew G. Knepley   DMLabel            ovAdjByRank; /* A DMLabel containing all points adjacent to shared points, separated by rank (value in label) */
477874ddda9SLisandro Dalcin   PetscSF            sfPoint;
478b0a623aaSMatthew G. Knepley   const PetscSFNode *remote;
479b0a623aaSMatthew G. Knepley   const PetscInt    *local;
4801fd9873aSMichael Lange   const PetscInt    *nrank, *rrank;
481b0a623aaSMatthew G. Knepley   PetscInt          *adj = NULL;
4821fd9873aSMichael Lange   PetscInt           pStart, pEnd, p, sStart, sEnd, nleaves, l;
4839852e123SBarry Smith   PetscMPIInt        rank, size;
48431bc6364SLisandro Dalcin   PetscBool          flg;
485b0a623aaSMatthew G. Knepley   PetscErrorCode     ierr;
486b0a623aaSMatthew G. Knepley 
487b0a623aaSMatthew G. Knepley   PetscFunctionBegin;
4886ba1a4c7SVaclav Hapla   *ovLabel = NULL;
489e540f424SMichael Lange   ierr = PetscObjectGetComm((PetscObject) dm, &comm);CHKERRQ(ierr);
490ffc4695bSBarry Smith   ierr = MPI_Comm_size(comm, &size);CHKERRMPI(ierr);
491ffc4695bSBarry Smith   ierr = MPI_Comm_rank(comm, &rank);CHKERRMPI(ierr);
4926ba1a4c7SVaclav Hapla   if (size == 1) PetscFunctionReturn(0);
493b0a623aaSMatthew G. Knepley   ierr = DMGetPointSF(dm, &sfPoint);CHKERRQ(ierr);
494b0a623aaSMatthew G. Knepley   ierr = DMPlexGetChart(dm, &pStart, &pEnd);CHKERRQ(ierr);
495d1674c6dSMatthew Knepley   if (!levels) {
496d1674c6dSMatthew Knepley     /* Add owned points */
497d1674c6dSMatthew Knepley     ierr = DMLabelCreate(PETSC_COMM_SELF, "Overlap label", ovLabel);CHKERRQ(ierr);
498d1674c6dSMatthew Knepley     for (p = pStart; p < pEnd; ++p) {ierr = DMLabelSetValue(*ovLabel, p, rank);CHKERRQ(ierr);}
499d1674c6dSMatthew Knepley     PetscFunctionReturn(0);
500d1674c6dSMatthew Knepley   }
501b0a623aaSMatthew G. Knepley   ierr = PetscSectionGetChart(leafSection, &sStart, &sEnd);CHKERRQ(ierr);
502b0a623aaSMatthew G. Knepley   ierr = PetscSFGetGraph(sfPoint, NULL, &nleaves, &local, &remote);CHKERRQ(ierr);
503d67d17b1SMatthew G. Knepley   ierr = DMLabelCreate(PETSC_COMM_SELF, "Overlap adjacency", &ovAdjByRank);CHKERRQ(ierr);
504b0a623aaSMatthew G. Knepley   /* Handle leaves: shared with the root point */
505b0a623aaSMatthew G. Knepley   for (l = 0; l < nleaves; ++l) {
506b0a623aaSMatthew G. Knepley     PetscInt adjSize = PETSC_DETERMINE, a;
507b0a623aaSMatthew G. Knepley 
508df20756eSMatthew G. Knepley     ierr = DMPlexGetAdjacency(dm, local ? local[l] : l, &adjSize, &adj);CHKERRQ(ierr);
509b0a623aaSMatthew G. Knepley     for (a = 0; a < adjSize; ++a) {ierr = DMLabelSetValue(ovAdjByRank, adj[a], remote[l].rank);CHKERRQ(ierr);}
510b0a623aaSMatthew G. Knepley   }
511b0a623aaSMatthew G. Knepley   ierr = ISGetIndices(rootrank, &rrank);CHKERRQ(ierr);
512b0a623aaSMatthew G. Knepley   ierr = ISGetIndices(leafrank, &nrank);CHKERRQ(ierr);
513b0a623aaSMatthew G. Knepley   /* Handle roots */
514b0a623aaSMatthew G. Knepley   for (p = pStart; p < pEnd; ++p) {
515b0a623aaSMatthew G. Knepley     PetscInt adjSize = PETSC_DETERMINE, neighbors = 0, noff, n, a;
516b0a623aaSMatthew G. Knepley 
517b0a623aaSMatthew G. Knepley     if ((p >= sStart) && (p < sEnd)) {
518b0a623aaSMatthew G. Knepley       /* Some leaves share a root with other leaves on different processes */
519b0a623aaSMatthew G. Knepley       ierr = PetscSectionGetDof(leafSection, p, &neighbors);CHKERRQ(ierr);
520b0a623aaSMatthew G. Knepley       if (neighbors) {
521b0a623aaSMatthew G. Knepley         ierr = PetscSectionGetOffset(leafSection, p, &noff);CHKERRQ(ierr);
522b0a623aaSMatthew G. Knepley         ierr = DMPlexGetAdjacency(dm, p, &adjSize, &adj);CHKERRQ(ierr);
523b0a623aaSMatthew G. Knepley         for (n = 0; n < neighbors; ++n) {
524b0a623aaSMatthew G. Knepley           const PetscInt remoteRank = nrank[noff+n];
525b0a623aaSMatthew G. Knepley 
526b0a623aaSMatthew G. Knepley           if (remoteRank == rank) continue;
527b0a623aaSMatthew G. Knepley           for (a = 0; a < adjSize; ++a) {ierr = DMLabelSetValue(ovAdjByRank, adj[a], remoteRank);CHKERRQ(ierr);}
528b0a623aaSMatthew G. Knepley         }
529b0a623aaSMatthew G. Knepley       }
530b0a623aaSMatthew G. Knepley     }
531b0a623aaSMatthew G. Knepley     /* Roots are shared with leaves */
532b0a623aaSMatthew G. Knepley     ierr = PetscSectionGetDof(rootSection, p, &neighbors);CHKERRQ(ierr);
533b0a623aaSMatthew G. Knepley     if (!neighbors) continue;
534b0a623aaSMatthew G. Knepley     ierr = PetscSectionGetOffset(rootSection, p, &noff);CHKERRQ(ierr);
535b0a623aaSMatthew G. Knepley     ierr = DMPlexGetAdjacency(dm, p, &adjSize, &adj);CHKERRQ(ierr);
536b0a623aaSMatthew G. Knepley     for (n = 0; n < neighbors; ++n) {
537b0a623aaSMatthew G. Knepley       const PetscInt remoteRank = rrank[noff+n];
538b0a623aaSMatthew G. Knepley 
539b0a623aaSMatthew G. Knepley       if (remoteRank == rank) continue;
540b0a623aaSMatthew G. Knepley       for (a = 0; a < adjSize; ++a) {ierr = DMLabelSetValue(ovAdjByRank, adj[a], remoteRank);CHKERRQ(ierr);}
541b0a623aaSMatthew G. Knepley     }
542b0a623aaSMatthew G. Knepley   }
543b0a623aaSMatthew G. Knepley   ierr = PetscFree(adj);CHKERRQ(ierr);
544b0a623aaSMatthew G. Knepley   ierr = ISRestoreIndices(rootrank, &rrank);CHKERRQ(ierr);
545b0a623aaSMatthew G. Knepley   ierr = ISRestoreIndices(leafrank, &nrank);CHKERRQ(ierr);
54624d039d7SMichael Lange   /* Add additional overlap levels */
547be200f8dSMichael Lange   for (l = 1; l < levels; l++) {
548be200f8dSMichael Lange     /* Propagate point donations over SF to capture remote connections */
549be200f8dSMichael Lange     ierr = DMPlexPartitionLabelPropagate(dm, ovAdjByRank);CHKERRQ(ierr);
550be200f8dSMichael Lange     /* Add next level of point donations to the label */
551be200f8dSMichael Lange     ierr = DMPlexPartitionLabelAdjacency(dm, ovAdjByRank);CHKERRQ(ierr);
552be200f8dSMichael Lange   }
55326a7d390SMatthew G. Knepley   /* We require the closure in the overlap */
5545abbe4feSMichael Lange   ierr = DMPlexPartitionLabelClosure(dm, ovAdjByRank);CHKERRQ(ierr);
555c5929fdfSBarry Smith   ierr = PetscOptionsHasName(((PetscObject) dm)->options,((PetscObject) dm)->prefix, "-overlap_view", &flg);CHKERRQ(ierr);
556e540f424SMichael Lange   if (flg) {
557825f8a23SLisandro Dalcin     PetscViewer viewer;
558825f8a23SLisandro Dalcin     ierr = PetscViewerASCIIGetStdout(PetscObjectComm((PetscObject)dm), &viewer);CHKERRQ(ierr);
559825f8a23SLisandro Dalcin     ierr = DMLabelView(ovAdjByRank, viewer);CHKERRQ(ierr);
560b0a623aaSMatthew G. Knepley   }
561874ddda9SLisandro Dalcin   /* Invert sender to receiver label */
562d67d17b1SMatthew G. Knepley   ierr = DMLabelCreate(PETSC_COMM_SELF, "Overlap label", ovLabel);CHKERRQ(ierr);
563874ddda9SLisandro Dalcin   ierr = DMPlexPartitionLabelInvert(dm, ovAdjByRank, NULL, *ovLabel);CHKERRQ(ierr);
564a9f1d5b2SMichael Lange   /* Add owned points, except for shared local points */
565a9f1d5b2SMichael Lange   for (p = pStart; p < pEnd; ++p) {ierr = DMLabelSetValue(*ovLabel, p, rank);CHKERRQ(ierr);}
566e540f424SMichael Lange   for (l = 0; l < nleaves; ++l) {
567a9f1d5b2SMichael Lange     ierr = DMLabelClearValue(*ovLabel, local[l], rank);CHKERRQ(ierr);
568a9f1d5b2SMichael Lange     ierr = DMLabelSetValue(*ovLabel, remote[l].index, remote[l].rank);CHKERRQ(ierr);
569e540f424SMichael Lange   }
570e540f424SMichael Lange   /* Clean up */
5711fd9873aSMichael Lange   ierr = DMLabelDestroy(&ovAdjByRank);CHKERRQ(ierr);
572b0a623aaSMatthew G. Knepley   PetscFunctionReturn(0);
573b0a623aaSMatthew G. Knepley }
57470034214SMatthew G. Knepley 
57524cc2ca5SMatthew G. Knepley /*@C
57624cc2ca5SMatthew G. Knepley   DMPlexCreateOverlapMigrationSF - Create an SF describing the new mesh distribution to make the overlap described by the input SF
57724cc2ca5SMatthew G. Knepley 
578d083f849SBarry Smith   Collective on dm
57924cc2ca5SMatthew G. Knepley 
58024cc2ca5SMatthew G. Knepley   Input Parameters:
58124cc2ca5SMatthew G. Knepley + dm          - The DM
58224cc2ca5SMatthew G. Knepley - overlapSF   - The SF mapping ghost points in overlap to owner points on other processes
58324cc2ca5SMatthew G. Knepley 
584064ec1f3Sprj-   Output Parameter:
585a2b725a8SWilliam Gropp . migrationSF - An SF that maps original points in old locations to points in new locations
58624cc2ca5SMatthew G. Knepley 
58724cc2ca5SMatthew G. Knepley   Level: developer
58824cc2ca5SMatthew G. Knepley 
589dccdeccaSVaclav Hapla .seealso: DMPlexCreateOverlapLabel(), DMPlexDistributeOverlap(), DMPlexDistribute()
59024cc2ca5SMatthew G. Knepley @*/
59146f9b1c3SMichael Lange PetscErrorCode DMPlexCreateOverlapMigrationSF(DM dm, PetscSF overlapSF, PetscSF *migrationSF)
59246f9b1c3SMichael Lange {
59346f9b1c3SMichael Lange   MPI_Comm           comm;
5949852e123SBarry Smith   PetscMPIInt        rank, size;
59546f9b1c3SMichael Lange   PetscInt           d, dim, p, pStart, pEnd, nroots, nleaves, newLeaves, point, numSharedPoints;
59646f9b1c3SMichael Lange   PetscInt          *pointDepths, *remoteDepths, *ilocal;
59746f9b1c3SMichael Lange   PetscInt          *depthRecv, *depthShift, *depthIdx;
59846f9b1c3SMichael Lange   PetscSFNode       *iremote;
59946f9b1c3SMichael Lange   PetscSF            pointSF;
60046f9b1c3SMichael Lange   const PetscInt    *sharedLocal;
60146f9b1c3SMichael Lange   const PetscSFNode *overlapRemote, *sharedRemote;
60246f9b1c3SMichael Lange   PetscErrorCode     ierr;
60346f9b1c3SMichael Lange 
60446f9b1c3SMichael Lange   PetscFunctionBegin;
60546f9b1c3SMichael Lange   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
60646f9b1c3SMichael Lange   ierr = PetscObjectGetComm((PetscObject)dm, &comm);CHKERRQ(ierr);
607ffc4695bSBarry Smith   ierr = MPI_Comm_rank(comm, &rank);CHKERRMPI(ierr);
608ffc4695bSBarry Smith   ierr = MPI_Comm_size(comm, &size);CHKERRMPI(ierr);
60946f9b1c3SMichael Lange   ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr);
61046f9b1c3SMichael Lange 
61146f9b1c3SMichael Lange   /* Before building the migration SF we need to know the new stratum offsets */
61246f9b1c3SMichael Lange   ierr = PetscSFGetGraph(overlapSF, &nroots, &nleaves, NULL, &overlapRemote);CHKERRQ(ierr);
61346f9b1c3SMichael Lange   ierr = PetscMalloc2(nroots, &pointDepths, nleaves, &remoteDepths);CHKERRQ(ierr);
61446f9b1c3SMichael Lange   for (d=0; d<dim+1; d++) {
61546f9b1c3SMichael Lange     ierr = DMPlexGetDepthStratum(dm, d, &pStart, &pEnd);CHKERRQ(ierr);
61646f9b1c3SMichael Lange     for (p=pStart; p<pEnd; p++) pointDepths[p] = d;
61746f9b1c3SMichael Lange   }
61846f9b1c3SMichael Lange   for (p=0; p<nleaves; p++) remoteDepths[p] = -1;
619ad227feaSJunchao Zhang   ierr = PetscSFBcastBegin(overlapSF, MPIU_INT, pointDepths, remoteDepths,MPI_REPLACE);CHKERRQ(ierr);
620ad227feaSJunchao Zhang   ierr = PetscSFBcastEnd(overlapSF, MPIU_INT, pointDepths, remoteDepths,MPI_REPLACE);CHKERRQ(ierr);
62146f9b1c3SMichael Lange 
6222d4ee042Sprj-   /* Count received points in each stratum and compute the internal strata shift */
62346f9b1c3SMichael Lange   ierr = PetscMalloc3(dim+1, &depthRecv, dim+1, &depthShift, dim+1, &depthIdx);CHKERRQ(ierr);
62446f9b1c3SMichael Lange   for (d=0; d<dim+1; d++) depthRecv[d]=0;
62546f9b1c3SMichael Lange   for (p=0; p<nleaves; p++) depthRecv[remoteDepths[p]]++;
62646f9b1c3SMichael Lange   depthShift[dim] = 0;
62746f9b1c3SMichael Lange   for (d=0; d<dim; d++) depthShift[d] = depthRecv[dim];
62846f9b1c3SMichael Lange   for (d=1; d<dim; d++) depthShift[d] += depthRecv[0];
62946f9b1c3SMichael Lange   for (d=dim-2; d>0; d--) depthShift[d] += depthRecv[d+1];
63046f9b1c3SMichael Lange   for (d=0; d<dim+1; d++) {
63146f9b1c3SMichael Lange     ierr = DMPlexGetDepthStratum(dm, d, &pStart, &pEnd);CHKERRQ(ierr);
63246f9b1c3SMichael Lange     depthIdx[d] = pStart + depthShift[d];
63346f9b1c3SMichael Lange   }
63446f9b1c3SMichael Lange 
63546f9b1c3SMichael Lange   /* Form the overlap SF build an SF that describes the full overlap migration SF */
63646f9b1c3SMichael Lange   ierr = DMPlexGetChart(dm, &pStart, &pEnd);CHKERRQ(ierr);
63746f9b1c3SMichael Lange   newLeaves = pEnd - pStart + nleaves;
63809b7985cSMatthew G. Knepley   ierr = PetscMalloc1(newLeaves, &ilocal);CHKERRQ(ierr);
63909b7985cSMatthew G. Knepley   ierr = PetscMalloc1(newLeaves, &iremote);CHKERRQ(ierr);
64046f9b1c3SMichael Lange   /* First map local points to themselves */
64146f9b1c3SMichael Lange   for (d=0; d<dim+1; d++) {
64246f9b1c3SMichael Lange     ierr = DMPlexGetDepthStratum(dm, d, &pStart, &pEnd);CHKERRQ(ierr);
64346f9b1c3SMichael Lange     for (p=pStart; p<pEnd; p++) {
64446f9b1c3SMichael Lange       point = p + depthShift[d];
64546f9b1c3SMichael Lange       ilocal[point] = point;
64646f9b1c3SMichael Lange       iremote[point].index = p;
64746f9b1c3SMichael Lange       iremote[point].rank = rank;
64846f9b1c3SMichael Lange       depthIdx[d]++;
64946f9b1c3SMichael Lange     }
65046f9b1c3SMichael Lange   }
65146f9b1c3SMichael Lange 
65246f9b1c3SMichael Lange   /* Add in the remote roots for currently shared points */
65346f9b1c3SMichael Lange   ierr = DMGetPointSF(dm, &pointSF);CHKERRQ(ierr);
65446f9b1c3SMichael Lange   ierr = PetscSFGetGraph(pointSF, NULL, &numSharedPoints, &sharedLocal, &sharedRemote);CHKERRQ(ierr);
65546f9b1c3SMichael Lange   for (d=0; d<dim+1; d++) {
65646f9b1c3SMichael Lange     ierr = DMPlexGetDepthStratum(dm, d, &pStart, &pEnd);CHKERRQ(ierr);
65746f9b1c3SMichael Lange     for (p=0; p<numSharedPoints; p++) {
65846f9b1c3SMichael Lange       if (pStart <= sharedLocal[p] && sharedLocal[p] < pEnd) {
65946f9b1c3SMichael Lange         point = sharedLocal[p] + depthShift[d];
66046f9b1c3SMichael Lange         iremote[point].index = sharedRemote[p].index;
66146f9b1c3SMichael Lange         iremote[point].rank = sharedRemote[p].rank;
66246f9b1c3SMichael Lange       }
66346f9b1c3SMichael Lange     }
66446f9b1c3SMichael Lange   }
66546f9b1c3SMichael Lange 
66646f9b1c3SMichael Lange   /* Now add the incoming overlap points */
66746f9b1c3SMichael Lange   for (p=0; p<nleaves; p++) {
66846f9b1c3SMichael Lange     point = depthIdx[remoteDepths[p]];
66946f9b1c3SMichael Lange     ilocal[point] = point;
67046f9b1c3SMichael Lange     iremote[point].index = overlapRemote[p].index;
67146f9b1c3SMichael Lange     iremote[point].rank = overlapRemote[p].rank;
67246f9b1c3SMichael Lange     depthIdx[remoteDepths[p]]++;
67346f9b1c3SMichael Lange   }
67415fff7beSMatthew G. Knepley   ierr = PetscFree2(pointDepths,remoteDepths);CHKERRQ(ierr);
67546f9b1c3SMichael Lange 
67646f9b1c3SMichael Lange   ierr = PetscSFCreate(comm, migrationSF);CHKERRQ(ierr);
67746f9b1c3SMichael Lange   ierr = PetscObjectSetName((PetscObject) *migrationSF, "Overlap Migration SF");CHKERRQ(ierr);
67846f9b1c3SMichael Lange   ierr = PetscSFSetFromOptions(*migrationSF);CHKERRQ(ierr);
67946f9b1c3SMichael Lange   ierr = DMPlexGetChart(dm, &pStart, &pEnd);CHKERRQ(ierr);
68046f9b1c3SMichael Lange   ierr = PetscSFSetGraph(*migrationSF, pEnd-pStart, newLeaves, ilocal, PETSC_OWN_POINTER, iremote, PETSC_OWN_POINTER);CHKERRQ(ierr);
68146f9b1c3SMichael Lange 
68246f9b1c3SMichael Lange   ierr = PetscFree3(depthRecv, depthShift, depthIdx);CHKERRQ(ierr);
68370034214SMatthew G. Knepley   PetscFunctionReturn(0);
68470034214SMatthew G. Knepley }
68570034214SMatthew G. Knepley 
686a9f1d5b2SMichael Lange /*@
687f0e73a3dSToby Isaac   DMPlexStratifyMigrationSF - Rearrange the leaves of a migration sf for stratification.
688a9f1d5b2SMichael Lange 
689064ec1f3Sprj-   Input Parameters:
690a9f1d5b2SMichael Lange + dm          - The DM
691a9f1d5b2SMichael Lange - sf          - A star forest with non-ordered leaves, usually defining a DM point migration
692a9f1d5b2SMichael Lange 
693a9f1d5b2SMichael Lange   Output Parameter:
694a9f1d5b2SMichael Lange . migrationSF - A star forest with added leaf indirection that ensures the resulting DM is stratified
695a9f1d5b2SMichael Lange 
696412e9a14SMatthew G. Knepley   Note:
697412e9a14SMatthew G. Knepley   This lexicographically sorts by (depth, cellType)
698412e9a14SMatthew G. Knepley 
699a9f1d5b2SMichael Lange   Level: developer
700a9f1d5b2SMichael Lange 
701a9f1d5b2SMichael Lange .seealso: DMPlexPartitionLabelCreateSF(), DMPlexDistribute(), DMPlexDistributeOverlap()
702a9f1d5b2SMichael Lange @*/
703a9f1d5b2SMichael Lange PetscErrorCode DMPlexStratifyMigrationSF(DM dm, PetscSF sf, PetscSF *migrationSF)
704a9f1d5b2SMichael Lange {
705a9f1d5b2SMichael Lange   MPI_Comm           comm;
7069852e123SBarry Smith   PetscMPIInt        rank, size;
707412e9a14SMatthew G. Knepley   PetscInt           d, ldepth, depth, dim, p, pStart, pEnd, nroots, nleaves;
708412e9a14SMatthew G. Knepley   PetscSFNode       *pointDepths, *remoteDepths;
709412e9a14SMatthew G. Knepley   PetscInt          *ilocal;
710a9f1d5b2SMichael Lange   PetscInt          *depthRecv, *depthShift, *depthIdx;
711412e9a14SMatthew G. Knepley   PetscInt          *ctRecv,    *ctShift,    *ctIdx;
712a9f1d5b2SMichael Lange   const PetscSFNode *iremote;
713a9f1d5b2SMichael Lange   PetscErrorCode     ierr;
714a9f1d5b2SMichael Lange 
715a9f1d5b2SMichael Lange   PetscFunctionBegin;
716a9f1d5b2SMichael Lange   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
717a9f1d5b2SMichael Lange   ierr = PetscObjectGetComm((PetscObject) dm, &comm);CHKERRQ(ierr);
718ffc4695bSBarry Smith   ierr = MPI_Comm_rank(comm, &rank);CHKERRMPI(ierr);
719ffc4695bSBarry Smith   ierr = MPI_Comm_size(comm, &size);CHKERRMPI(ierr);
7207fab53ddSMatthew G. Knepley   ierr = DMPlexGetDepth(dm, &ldepth);CHKERRQ(ierr);
721412e9a14SMatthew G. Knepley   ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr);
722820f2d46SBarry Smith   ierr = MPIU_Allreduce(&ldepth, &depth, 1, MPIU_INT, MPI_MAX, comm);CHKERRMPI(ierr);
7232c71b3e2SJacob Faibussowitsch   PetscCheckFalse((ldepth >= 0) && (depth != ldepth),PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Inconsistent Plex depth %d != %d", ldepth, depth);
72430b0ce1bSStefano Zampini   ierr = PetscLogEventBegin(DMPLEX_PartStratSF,dm,0,0,0);CHKERRQ(ierr);
725a9f1d5b2SMichael Lange 
726a9f1d5b2SMichael Lange   /* Before building the migration SF we need to know the new stratum offsets */
727a9f1d5b2SMichael Lange   ierr = PetscSFGetGraph(sf, &nroots, &nleaves, NULL, &iremote);CHKERRQ(ierr);
728a9f1d5b2SMichael Lange   ierr = PetscMalloc2(nroots, &pointDepths, nleaves, &remoteDepths);CHKERRQ(ierr);
7297fab53ddSMatthew G. Knepley   for (d = 0; d < depth+1; ++d) {
730a9f1d5b2SMichael Lange     ierr = DMPlexGetDepthStratum(dm, d, &pStart, &pEnd);CHKERRQ(ierr);
731f0e73a3dSToby Isaac     for (p = pStart; p < pEnd; ++p) {
732412e9a14SMatthew G. Knepley       DMPolytopeType ct;
733f0e73a3dSToby Isaac 
734412e9a14SMatthew G. Knepley       ierr = DMPlexGetCellType(dm, p, &ct);CHKERRQ(ierr);
735412e9a14SMatthew G. Knepley       pointDepths[p].index = d;
736412e9a14SMatthew G. Knepley       pointDepths[p].rank  = ct;
737f0e73a3dSToby Isaac     }
738412e9a14SMatthew G. Knepley   }
739412e9a14SMatthew G. Knepley   for (p = 0; p < nleaves; ++p) {remoteDepths[p].index = -1; remoteDepths[p].rank = -1;}
740ad227feaSJunchao Zhang   ierr = PetscSFBcastBegin(sf, MPIU_2INT, pointDepths, remoteDepths,MPI_REPLACE);CHKERRQ(ierr);
741ad227feaSJunchao Zhang   ierr = PetscSFBcastEnd(sf, MPIU_2INT, pointDepths, remoteDepths,MPI_REPLACE);CHKERRQ(ierr);
742412e9a14SMatthew G. Knepley   /* Count received points in each stratum and compute the internal strata shift */
743412e9a14SMatthew G. Knepley   ierr = PetscCalloc6(depth+1, &depthRecv, depth+1, &depthShift, depth+1, &depthIdx, DM_NUM_POLYTOPES, &ctRecv, DM_NUM_POLYTOPES, &ctShift, DM_NUM_POLYTOPES, &ctIdx);CHKERRQ(ierr);
744412e9a14SMatthew G. Knepley   for (p = 0; p < nleaves; ++p) {
745412e9a14SMatthew G. Knepley     if (remoteDepths[p].rank < 0) {
746412e9a14SMatthew G. Knepley       ++depthRecv[remoteDepths[p].index];
747412e9a14SMatthew G. Knepley     } else {
748412e9a14SMatthew G. Knepley       ++ctRecv[remoteDepths[p].rank];
749412e9a14SMatthew G. Knepley     }
750412e9a14SMatthew G. Knepley   }
751412e9a14SMatthew G. Knepley   {
752412e9a14SMatthew G. Knepley     PetscInt depths[4], dims[4], shift = 0, i, c;
753412e9a14SMatthew G. Knepley 
7548238f61eSMatthew G. Knepley     /* Cells (depth), Vertices (0), Faces (depth-1), Edges (1)
7558238f61eSMatthew G. Knepley          Consider DM_POLYTOPE_FV_GHOST and DM_POLYTOPE_INTERIOR_GHOST as cells
7568238f61eSMatthew G. Knepley      */
757412e9a14SMatthew G. Knepley     depths[0] = depth; depths[1] = 0; depths[2] = depth-1; depths[3] = 1;
758412e9a14SMatthew G. Knepley     dims[0]   = dim;   dims[1]   = 0; dims[2]   = dim-1;   dims[3]   = 1;
759412e9a14SMatthew G. Knepley     for (i = 0; i <= depth; ++i) {
760412e9a14SMatthew G. Knepley       const PetscInt dep = depths[i];
761412e9a14SMatthew G. Knepley       const PetscInt dim = dims[i];
762412e9a14SMatthew G. Knepley 
763412e9a14SMatthew G. Knepley       for (c = 0; c < DM_NUM_POLYTOPES; ++c) {
7648238f61eSMatthew G. Knepley         if (DMPolytopeTypeGetDim((DMPolytopeType) c) != dim && !(i == 0 && (c == DM_POLYTOPE_FV_GHOST || c == DM_POLYTOPE_INTERIOR_GHOST))) continue;
765412e9a14SMatthew G. Knepley         ctShift[c] = shift;
766412e9a14SMatthew G. Knepley         shift     += ctRecv[c];
767412e9a14SMatthew G. Knepley       }
768412e9a14SMatthew G. Knepley       depthShift[dep] = shift;
769412e9a14SMatthew G. Knepley       shift          += depthRecv[dep];
770412e9a14SMatthew G. Knepley     }
771412e9a14SMatthew G. Knepley     for (c = 0; c < DM_NUM_POLYTOPES; ++c) {
772412e9a14SMatthew G. Knepley       const PetscInt ctDim = DMPolytopeTypeGetDim((DMPolytopeType) c);
773412e9a14SMatthew G. Knepley 
7748238f61eSMatthew G. Knepley       if ((ctDim < 0 || ctDim > dim) && (c != DM_POLYTOPE_FV_GHOST && c != DM_POLYTOPE_INTERIOR_GHOST)) {
775412e9a14SMatthew G. Knepley         ctShift[c] = shift;
776412e9a14SMatthew G. Knepley         shift     += ctRecv[c];
777412e9a14SMatthew G. Knepley       }
778412e9a14SMatthew G. Knepley     }
779412e9a14SMatthew G. Knepley   }
780a9f1d5b2SMichael Lange   /* Derive a new local permutation based on stratified indices */
781a9f1d5b2SMichael Lange   ierr = PetscMalloc1(nleaves, &ilocal);CHKERRQ(ierr);
7827fab53ddSMatthew G. Knepley   for (p = 0; p < nleaves; ++p) {
783412e9a14SMatthew G. Knepley     const PetscInt       dep = remoteDepths[p].index;
784412e9a14SMatthew G. Knepley     const DMPolytopeType ct  = (DMPolytopeType) remoteDepths[p].rank;
7857fab53ddSMatthew G. Knepley 
786412e9a14SMatthew G. Knepley     if ((PetscInt) ct < 0) {
7877fab53ddSMatthew G. Knepley       ilocal[p] = depthShift[dep] + depthIdx[dep];
788412e9a14SMatthew G. Knepley       ++depthIdx[dep];
789412e9a14SMatthew G. Knepley     } else {
790412e9a14SMatthew G. Knepley       ilocal[p] = ctShift[ct] + ctIdx[ct];
791412e9a14SMatthew G. Knepley       ++ctIdx[ct];
792412e9a14SMatthew G. Knepley     }
793a9f1d5b2SMichael Lange   }
794a9f1d5b2SMichael Lange   ierr = PetscSFCreate(comm, migrationSF);CHKERRQ(ierr);
795a9f1d5b2SMichael Lange   ierr = PetscObjectSetName((PetscObject) *migrationSF, "Migration SF");CHKERRQ(ierr);
796a9f1d5b2SMichael Lange   ierr = PetscSFSetGraph(*migrationSF, nroots, nleaves, ilocal, PETSC_OWN_POINTER, iremote, PETSC_COPY_VALUES);CHKERRQ(ierr);
797a9f1d5b2SMichael Lange   ierr = PetscFree2(pointDepths,remoteDepths);CHKERRQ(ierr);
798412e9a14SMatthew G. Knepley   ierr = PetscFree6(depthRecv, depthShift, depthIdx, ctRecv, ctShift, ctIdx);CHKERRQ(ierr);
79930b0ce1bSStefano Zampini   ierr = PetscLogEventEnd(DMPLEX_PartStratSF,dm,0,0,0);CHKERRQ(ierr);
800a9f1d5b2SMichael Lange   PetscFunctionReturn(0);
801a9f1d5b2SMichael Lange }
802a9f1d5b2SMichael Lange 
80370034214SMatthew G. Knepley /*@
80470034214SMatthew G. Knepley   DMPlexDistributeField - Distribute field data to match a given PetscSF, usually the SF from mesh distribution
80570034214SMatthew G. Knepley 
806d083f849SBarry Smith   Collective on dm
80770034214SMatthew G. Knepley 
80870034214SMatthew G. Knepley   Input Parameters:
80970034214SMatthew G. Knepley + dm - The DMPlex object
81070034214SMatthew G. Knepley . pointSF - The PetscSF describing the communication pattern
81170034214SMatthew G. Knepley . originalSection - The PetscSection for existing data layout
812cb15cd0eSMatthew G. Knepley - originalVec - The existing data in a local vector
81370034214SMatthew G. Knepley 
81470034214SMatthew G. Knepley   Output Parameters:
81570034214SMatthew G. Knepley + newSection - The PetscSF describing the new data layout
816cb15cd0eSMatthew G. Knepley - newVec - The new data in a local vector
81770034214SMatthew G. Knepley 
81870034214SMatthew G. Knepley   Level: developer
81970034214SMatthew G. Knepley 
82070034214SMatthew G. Knepley .seealso: DMPlexDistribute(), DMPlexDistributeFieldIS(), DMPlexDistributeData()
82170034214SMatthew G. Knepley @*/
82270034214SMatthew G. Knepley PetscErrorCode DMPlexDistributeField(DM dm, PetscSF pointSF, PetscSection originalSection, Vec originalVec, PetscSection newSection, Vec newVec)
82370034214SMatthew G. Knepley {
82470034214SMatthew G. Knepley   PetscSF        fieldSF;
82570034214SMatthew G. Knepley   PetscInt      *remoteOffsets, fieldSize;
82670034214SMatthew G. Knepley   PetscScalar   *originalValues, *newValues;
82770034214SMatthew G. Knepley   PetscErrorCode ierr;
82870034214SMatthew G. Knepley 
82970034214SMatthew G. Knepley   PetscFunctionBegin;
83070034214SMatthew G. Knepley   ierr = PetscLogEventBegin(DMPLEX_DistributeField,dm,0,0,0);CHKERRQ(ierr);
83170034214SMatthew G. Knepley   ierr = PetscSFDistributeSection(pointSF, originalSection, &remoteOffsets, newSection);CHKERRQ(ierr);
83270034214SMatthew G. Knepley 
83370034214SMatthew G. Knepley   ierr = PetscSectionGetStorageSize(newSection, &fieldSize);CHKERRQ(ierr);
83470034214SMatthew G. Knepley   ierr = VecSetSizes(newVec, fieldSize, PETSC_DETERMINE);CHKERRQ(ierr);
83570034214SMatthew G. Knepley   ierr = VecSetType(newVec,dm->vectype);CHKERRQ(ierr);
83670034214SMatthew G. Knepley 
83770034214SMatthew G. Knepley   ierr = VecGetArray(originalVec, &originalValues);CHKERRQ(ierr);
83870034214SMatthew G. Knepley   ierr = VecGetArray(newVec, &newValues);CHKERRQ(ierr);
83970034214SMatthew G. Knepley   ierr = PetscSFCreateSectionSF(pointSF, originalSection, remoteOffsets, newSection, &fieldSF);CHKERRQ(ierr);
8408a713f3bSLawrence Mitchell   ierr = PetscFree(remoteOffsets);CHKERRQ(ierr);
841ad227feaSJunchao Zhang   ierr = PetscSFBcastBegin(fieldSF, MPIU_SCALAR, originalValues, newValues,MPI_REPLACE);CHKERRQ(ierr);
842ad227feaSJunchao Zhang   ierr = PetscSFBcastEnd(fieldSF, MPIU_SCALAR, originalValues, newValues,MPI_REPLACE);CHKERRQ(ierr);
84370034214SMatthew G. Knepley   ierr = PetscSFDestroy(&fieldSF);CHKERRQ(ierr);
84470034214SMatthew G. Knepley   ierr = VecRestoreArray(newVec, &newValues);CHKERRQ(ierr);
84570034214SMatthew G. Knepley   ierr = VecRestoreArray(originalVec, &originalValues);CHKERRQ(ierr);
84670034214SMatthew G. Knepley   ierr = PetscLogEventEnd(DMPLEX_DistributeField,dm,0,0,0);CHKERRQ(ierr);
84770034214SMatthew G. Knepley   PetscFunctionReturn(0);
84870034214SMatthew G. Knepley }
84970034214SMatthew G. Knepley 
85070034214SMatthew G. Knepley /*@
85170034214SMatthew G. Knepley   DMPlexDistributeFieldIS - Distribute field data to match a given PetscSF, usually the SF from mesh distribution
85270034214SMatthew G. Knepley 
853d083f849SBarry Smith   Collective on dm
85470034214SMatthew G. Knepley 
85570034214SMatthew G. Knepley   Input Parameters:
85670034214SMatthew G. Knepley + dm - The DMPlex object
85770034214SMatthew G. Knepley . pointSF - The PetscSF describing the communication pattern
85870034214SMatthew G. Knepley . originalSection - The PetscSection for existing data layout
85970034214SMatthew G. Knepley - originalIS - The existing data
86070034214SMatthew G. Knepley 
86170034214SMatthew G. Knepley   Output Parameters:
86270034214SMatthew G. Knepley + newSection - The PetscSF describing the new data layout
86370034214SMatthew G. Knepley - newIS - The new data
86470034214SMatthew G. Knepley 
86570034214SMatthew G. Knepley   Level: developer
86670034214SMatthew G. Knepley 
86770034214SMatthew G. Knepley .seealso: DMPlexDistribute(), DMPlexDistributeField(), DMPlexDistributeData()
86870034214SMatthew G. Knepley @*/
86970034214SMatthew G. Knepley PetscErrorCode DMPlexDistributeFieldIS(DM dm, PetscSF pointSF, PetscSection originalSection, IS originalIS, PetscSection newSection, IS *newIS)
87070034214SMatthew G. Knepley {
87170034214SMatthew G. Knepley   PetscSF         fieldSF;
87270034214SMatthew G. Knepley   PetscInt       *newValues, *remoteOffsets, fieldSize;
87370034214SMatthew G. Knepley   const PetscInt *originalValues;
87470034214SMatthew G. Knepley   PetscErrorCode  ierr;
87570034214SMatthew G. Knepley 
87670034214SMatthew G. Knepley   PetscFunctionBegin;
87770034214SMatthew G. Knepley   ierr = PetscLogEventBegin(DMPLEX_DistributeField,dm,0,0,0);CHKERRQ(ierr);
87870034214SMatthew G. Knepley   ierr = PetscSFDistributeSection(pointSF, originalSection, &remoteOffsets, newSection);CHKERRQ(ierr);
87970034214SMatthew G. Knepley 
88070034214SMatthew G. Knepley   ierr = PetscSectionGetStorageSize(newSection, &fieldSize);CHKERRQ(ierr);
881854ce69bSBarry Smith   ierr = PetscMalloc1(fieldSize, &newValues);CHKERRQ(ierr);
88270034214SMatthew G. Knepley 
88370034214SMatthew G. Knepley   ierr = ISGetIndices(originalIS, &originalValues);CHKERRQ(ierr);
88470034214SMatthew G. Knepley   ierr = PetscSFCreateSectionSF(pointSF, originalSection, remoteOffsets, newSection, &fieldSF);CHKERRQ(ierr);
8858a713f3bSLawrence Mitchell   ierr = PetscFree(remoteOffsets);CHKERRQ(ierr);
886ad227feaSJunchao Zhang   ierr = PetscSFBcastBegin(fieldSF, MPIU_INT, (PetscInt *) originalValues, newValues,MPI_REPLACE);CHKERRQ(ierr);
887ad227feaSJunchao Zhang   ierr = PetscSFBcastEnd(fieldSF, MPIU_INT, (PetscInt *) originalValues, newValues,MPI_REPLACE);CHKERRQ(ierr);
88870034214SMatthew G. Knepley   ierr = PetscSFDestroy(&fieldSF);CHKERRQ(ierr);
88970034214SMatthew G. Knepley   ierr = ISRestoreIndices(originalIS, &originalValues);CHKERRQ(ierr);
89070034214SMatthew G. Knepley   ierr = ISCreateGeneral(PetscObjectComm((PetscObject) pointSF), fieldSize, newValues, PETSC_OWN_POINTER, newIS);CHKERRQ(ierr);
89170034214SMatthew G. Knepley   ierr = PetscLogEventEnd(DMPLEX_DistributeField,dm,0,0,0);CHKERRQ(ierr);
89270034214SMatthew G. Knepley   PetscFunctionReturn(0);
89370034214SMatthew G. Knepley }
89470034214SMatthew G. Knepley 
89570034214SMatthew G. Knepley /*@
89670034214SMatthew G. Knepley   DMPlexDistributeData - Distribute field data to match a given PetscSF, usually the SF from mesh distribution
89770034214SMatthew G. Knepley 
898d083f849SBarry Smith   Collective on dm
89970034214SMatthew G. Knepley 
90070034214SMatthew G. Knepley   Input Parameters:
90170034214SMatthew G. Knepley + dm - The DMPlex object
90270034214SMatthew G. Knepley . pointSF - The PetscSF describing the communication pattern
90370034214SMatthew G. Knepley . originalSection - The PetscSection for existing data layout
90470034214SMatthew G. Knepley . datatype - The type of data
90570034214SMatthew G. Knepley - originalData - The existing data
90670034214SMatthew G. Knepley 
90770034214SMatthew G. Knepley   Output Parameters:
90870034214SMatthew G. Knepley + newSection - The PetscSection describing the new data layout
90970034214SMatthew G. Knepley - newData - The new data
91070034214SMatthew G. Knepley 
91170034214SMatthew G. Knepley   Level: developer
91270034214SMatthew G. Knepley 
91370034214SMatthew G. Knepley .seealso: DMPlexDistribute(), DMPlexDistributeField()
91470034214SMatthew G. Knepley @*/
91570034214SMatthew G. Knepley PetscErrorCode DMPlexDistributeData(DM dm, PetscSF pointSF, PetscSection originalSection, MPI_Datatype datatype, void *originalData, PetscSection newSection, void **newData)
91670034214SMatthew G. Knepley {
91770034214SMatthew G. Knepley   PetscSF        fieldSF;
91870034214SMatthew G. Knepley   PetscInt      *remoteOffsets, fieldSize;
91970034214SMatthew G. Knepley   PetscMPIInt    dataSize;
92070034214SMatthew G. Knepley   PetscErrorCode ierr;
92170034214SMatthew G. Knepley 
92270034214SMatthew G. Knepley   PetscFunctionBegin;
92370034214SMatthew G. Knepley   ierr = PetscLogEventBegin(DMPLEX_DistributeData,dm,0,0,0);CHKERRQ(ierr);
92470034214SMatthew G. Knepley   ierr = PetscSFDistributeSection(pointSF, originalSection, &remoteOffsets, newSection);CHKERRQ(ierr);
92570034214SMatthew G. Knepley 
92670034214SMatthew G. Knepley   ierr = PetscSectionGetStorageSize(newSection, &fieldSize);CHKERRQ(ierr);
927ffc4695bSBarry Smith   ierr = MPI_Type_size(datatype, &dataSize);CHKERRMPI(ierr);
92870034214SMatthew G. Knepley   ierr = PetscMalloc(fieldSize * dataSize, newData);CHKERRQ(ierr);
92970034214SMatthew G. Knepley 
93070034214SMatthew G. Knepley   ierr = PetscSFCreateSectionSF(pointSF, originalSection, remoteOffsets, newSection, &fieldSF);CHKERRQ(ierr);
9318a713f3bSLawrence Mitchell   ierr = PetscFree(remoteOffsets);CHKERRQ(ierr);
932ad227feaSJunchao Zhang   ierr = PetscSFBcastBegin(fieldSF, datatype, originalData, *newData,MPI_REPLACE);CHKERRQ(ierr);
933ad227feaSJunchao Zhang   ierr = PetscSFBcastEnd(fieldSF, datatype, originalData, *newData,MPI_REPLACE);CHKERRQ(ierr);
93470034214SMatthew G. Knepley   ierr = PetscSFDestroy(&fieldSF);CHKERRQ(ierr);
93570034214SMatthew G. Knepley   ierr = PetscLogEventEnd(DMPLEX_DistributeData,dm,0,0,0);CHKERRQ(ierr);
93670034214SMatthew G. Knepley   PetscFunctionReturn(0);
93770034214SMatthew G. Knepley }
93870034214SMatthew G. Knepley 
93924cc2ca5SMatthew G. Knepley static PetscErrorCode DMPlexDistributeCones(DM dm, PetscSF migrationSF, ISLocalToGlobalMapping original, ISLocalToGlobalMapping renumbering, DM dmParallel)
940cc71bff1SMichael Lange {
941cc71bff1SMichael Lange   DM_Plex               *pmesh = (DM_Plex*) (dmParallel)->data;
942cc71bff1SMichael Lange   MPI_Comm               comm;
943cc71bff1SMichael Lange   PetscSF                coneSF;
944cc71bff1SMichael Lange   PetscSection           originalConeSection, newConeSection;
945ac04eaf7SToby Isaac   PetscInt              *remoteOffsets, *cones, *globCones, *newCones, newConesSize;
946cc71bff1SMichael Lange   PetscBool              flg;
947cc71bff1SMichael Lange   PetscErrorCode         ierr;
948cc71bff1SMichael Lange 
949cc71bff1SMichael Lange   PetscFunctionBegin;
950cc71bff1SMichael Lange   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
9510c86c063SLisandro Dalcin   PetscValidHeaderSpecific(dmParallel, DM_CLASSID, 5);
9520c86c063SLisandro Dalcin   ierr = PetscLogEventBegin(DMPLEX_DistributeCones,dm,0,0,0);CHKERRQ(ierr);
953cc71bff1SMichael Lange   /* Distribute cone section */
954cc71bff1SMichael Lange   ierr = PetscObjectGetComm((PetscObject)dm, &comm);CHKERRQ(ierr);
955cc71bff1SMichael Lange   ierr = DMPlexGetConeSection(dm, &originalConeSection);CHKERRQ(ierr);
956cc71bff1SMichael Lange   ierr = DMPlexGetConeSection(dmParallel, &newConeSection);CHKERRQ(ierr);
957cc71bff1SMichael Lange   ierr = PetscSFDistributeSection(migrationSF, originalConeSection, &remoteOffsets, newConeSection);CHKERRQ(ierr);
958cc71bff1SMichael Lange   ierr = DMSetUp(dmParallel);CHKERRQ(ierr);
959cc71bff1SMichael Lange   {
960cc71bff1SMichael Lange     PetscInt pStart, pEnd, p;
961cc71bff1SMichael Lange 
962cc71bff1SMichael Lange     ierr = PetscSectionGetChart(newConeSection, &pStart, &pEnd);CHKERRQ(ierr);
963cc71bff1SMichael Lange     for (p = pStart; p < pEnd; ++p) {
964cc71bff1SMichael Lange       PetscInt coneSize;
965cc71bff1SMichael Lange       ierr               = PetscSectionGetDof(newConeSection, p, &coneSize);CHKERRQ(ierr);
966cc71bff1SMichael Lange       pmesh->maxConeSize = PetscMax(pmesh->maxConeSize, coneSize);
967cc71bff1SMichael Lange     }
968cc71bff1SMichael Lange   }
969cc71bff1SMichael Lange   /* Communicate and renumber cones */
970cc71bff1SMichael Lange   ierr = PetscSFCreateSectionSF(migrationSF, originalConeSection, remoteOffsets, newConeSection, &coneSF);CHKERRQ(ierr);
9718a713f3bSLawrence Mitchell   ierr = PetscFree(remoteOffsets);CHKERRQ(ierr);
972cc71bff1SMichael Lange   ierr = DMPlexGetCones(dm, &cones);CHKERRQ(ierr);
973ac04eaf7SToby Isaac   if (original) {
974ac04eaf7SToby Isaac     PetscInt numCones;
975ac04eaf7SToby Isaac 
976367003a6SStefano Zampini     ierr = PetscSectionGetStorageSize(originalConeSection,&numCones);CHKERRQ(ierr);
977367003a6SStefano Zampini     ierr = PetscMalloc1(numCones,&globCones);CHKERRQ(ierr);
978ac04eaf7SToby Isaac     ierr = ISLocalToGlobalMappingApplyBlock(original, numCones, cones, globCones);CHKERRQ(ierr);
979367003a6SStefano Zampini   } else {
980ac04eaf7SToby Isaac     globCones = cones;
981ac04eaf7SToby Isaac   }
982cc71bff1SMichael Lange   ierr = DMPlexGetCones(dmParallel, &newCones);CHKERRQ(ierr);
983ad227feaSJunchao Zhang   ierr = PetscSFBcastBegin(coneSF, MPIU_INT, globCones, newCones,MPI_REPLACE);CHKERRQ(ierr);
984ad227feaSJunchao Zhang   ierr = PetscSFBcastEnd(coneSF, MPIU_INT, globCones, newCones,MPI_REPLACE);CHKERRQ(ierr);
985ac04eaf7SToby Isaac   if (original) {
986ac04eaf7SToby Isaac     ierr = PetscFree(globCones);CHKERRQ(ierr);
987ac04eaf7SToby Isaac   }
988cc71bff1SMichael Lange   ierr = PetscSectionGetStorageSize(newConeSection, &newConesSize);CHKERRQ(ierr);
989cc71bff1SMichael Lange   ierr = ISGlobalToLocalMappingApplyBlock(renumbering, IS_GTOLM_MASK, newConesSize, newCones, NULL, newCones);CHKERRQ(ierr);
99076bd3646SJed Brown   if (PetscDefined(USE_DEBUG)) {
9913533c52bSMatthew G. Knepley     PetscInt  p;
9923533c52bSMatthew G. Knepley     PetscBool valid = PETSC_TRUE;
9933533c52bSMatthew G. Knepley     for (p = 0; p < newConesSize; ++p) {
994367003a6SStefano Zampini       if (newCones[p] < 0) {valid = PETSC_FALSE; ierr = PetscPrintf(PETSC_COMM_SELF, "[%d] Point %D not in overlap SF\n", PetscGlobalRank,p);CHKERRQ(ierr);}
9953533c52bSMatthew G. Knepley     }
9962c71b3e2SJacob Faibussowitsch     PetscCheckFalse(!valid,PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Invalid global to local map");
9973533c52bSMatthew G. Knepley   }
998c5929fdfSBarry Smith   ierr = PetscOptionsHasName(((PetscObject) dm)->options,((PetscObject) dm)->prefix, "-cones_view", &flg);CHKERRQ(ierr);
999cc71bff1SMichael Lange   if (flg) {
1000cc71bff1SMichael Lange     ierr = PetscPrintf(comm, "Serial Cone Section:\n");CHKERRQ(ierr);
1001a8c5bd36SStefano Zampini     ierr = PetscSectionView(originalConeSection, PETSC_VIEWER_STDOUT_(comm));CHKERRQ(ierr);
1002cc71bff1SMichael Lange     ierr = PetscPrintf(comm, "Parallel Cone Section:\n");CHKERRQ(ierr);
1003a8c5bd36SStefano Zampini     ierr = PetscSectionView(newConeSection, PETSC_VIEWER_STDOUT_(comm));CHKERRQ(ierr);
1004cc71bff1SMichael Lange     ierr = PetscSFView(coneSF, NULL);CHKERRQ(ierr);
1005cc71bff1SMichael Lange   }
1006cc71bff1SMichael Lange   ierr = DMPlexGetConeOrientations(dm, &cones);CHKERRQ(ierr);
1007cc71bff1SMichael Lange   ierr = DMPlexGetConeOrientations(dmParallel, &newCones);CHKERRQ(ierr);
1008ad227feaSJunchao Zhang   ierr = PetscSFBcastBegin(coneSF, MPIU_INT, cones, newCones,MPI_REPLACE);CHKERRQ(ierr);
1009ad227feaSJunchao Zhang   ierr = PetscSFBcastEnd(coneSF, MPIU_INT, cones, newCones,MPI_REPLACE);CHKERRQ(ierr);
1010cc71bff1SMichael Lange   ierr = PetscSFDestroy(&coneSF);CHKERRQ(ierr);
1011cc71bff1SMichael Lange   ierr = PetscLogEventEnd(DMPLEX_DistributeCones,dm,0,0,0);CHKERRQ(ierr);
1012eaf898f9SPatrick Sanan   /* Create supports and stratify DMPlex */
1013cc71bff1SMichael Lange   {
1014cc71bff1SMichael Lange     PetscInt pStart, pEnd;
1015cc71bff1SMichael Lange 
1016cc71bff1SMichael Lange     ierr = PetscSectionGetChart(pmesh->coneSection, &pStart, &pEnd);CHKERRQ(ierr);
1017cc71bff1SMichael Lange     ierr = PetscSectionSetChart(pmesh->supportSection, pStart, pEnd);CHKERRQ(ierr);
1018cc71bff1SMichael Lange   }
1019cc71bff1SMichael Lange   ierr = DMPlexSymmetrize(dmParallel);CHKERRQ(ierr);
1020cc71bff1SMichael Lange   ierr = DMPlexStratify(dmParallel);CHKERRQ(ierr);
10211cf84007SMatthew G. Knepley   {
10221cf84007SMatthew G. Knepley     PetscBool useCone, useClosure, useAnchors;
10231cf84007SMatthew G. Knepley 
1024b0441da4SMatthew G. Knepley     ierr = DMGetBasicAdjacency(dm, &useCone, &useClosure);CHKERRQ(ierr);
1025b0441da4SMatthew G. Knepley     ierr = DMSetBasicAdjacency(dmParallel, useCone, useClosure);CHKERRQ(ierr);
10261cf84007SMatthew G. Knepley     ierr = DMPlexGetAdjacencyUseAnchors(dm, &useAnchors);CHKERRQ(ierr);
10271cf84007SMatthew G. Knepley     ierr = DMPlexSetAdjacencyUseAnchors(dmParallel, useAnchors);CHKERRQ(ierr);
10281cf84007SMatthew G. Knepley   }
1029cc71bff1SMichael Lange   PetscFunctionReturn(0);
1030cc71bff1SMichael Lange }
1031cc71bff1SMichael Lange 
103224cc2ca5SMatthew G. Knepley static PetscErrorCode DMPlexDistributeCoordinates(DM dm, PetscSF migrationSF, DM dmParallel)
10330df0e737SMichael Lange {
10340df0e737SMichael Lange   MPI_Comm         comm;
10359318fe57SMatthew G. Knepley   DM               cdm, cdmParallel;
10360df0e737SMichael Lange   PetscSection     originalCoordSection, newCoordSection;
10370df0e737SMichael Lange   Vec              originalCoordinates, newCoordinates;
10380df0e737SMichael Lange   PetscInt         bs;
103990b157c4SStefano Zampini   PetscBool        isper;
10400df0e737SMichael Lange   const char      *name;
10410df0e737SMichael Lange   const PetscReal *maxCell, *L;
10425dc8c3f7SMatthew G. Knepley   const DMBoundaryType *bd;
10430df0e737SMichael Lange   PetscErrorCode   ierr;
10440df0e737SMichael Lange 
10450df0e737SMichael Lange   PetscFunctionBegin;
10460df0e737SMichael Lange   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
10470c86c063SLisandro Dalcin   PetscValidHeaderSpecific(dmParallel, DM_CLASSID, 3);
10480df0e737SMichael Lange 
10490df0e737SMichael Lange   ierr = PetscObjectGetComm((PetscObject)dm, &comm);CHKERRQ(ierr);
10500df0e737SMichael Lange   ierr = DMGetCoordinateSection(dm, &originalCoordSection);CHKERRQ(ierr);
10510df0e737SMichael Lange   ierr = DMGetCoordinateSection(dmParallel, &newCoordSection);CHKERRQ(ierr);
10520df0e737SMichael Lange   ierr = DMGetCoordinatesLocal(dm, &originalCoordinates);CHKERRQ(ierr);
10530df0e737SMichael Lange   if (originalCoordinates) {
10548b9ced59SLisandro Dalcin     ierr = VecCreate(PETSC_COMM_SELF, &newCoordinates);CHKERRQ(ierr);
10550df0e737SMichael Lange     ierr = PetscObjectGetName((PetscObject) originalCoordinates, &name);CHKERRQ(ierr);
10560df0e737SMichael Lange     ierr = PetscObjectSetName((PetscObject) newCoordinates, name);CHKERRQ(ierr);
10570df0e737SMichael Lange 
10580df0e737SMichael Lange     ierr = DMPlexDistributeField(dm, migrationSF, originalCoordSection, originalCoordinates, newCoordSection, newCoordinates);CHKERRQ(ierr);
10590df0e737SMichael Lange     ierr = DMSetCoordinatesLocal(dmParallel, newCoordinates);CHKERRQ(ierr);
10600df0e737SMichael Lange     ierr = VecGetBlockSize(originalCoordinates, &bs);CHKERRQ(ierr);
10610df0e737SMichael Lange     ierr = VecSetBlockSize(newCoordinates, bs);CHKERRQ(ierr);
10620df0e737SMichael Lange     ierr = VecDestroy(&newCoordinates);CHKERRQ(ierr);
10630df0e737SMichael Lange   }
106490b157c4SStefano Zampini   ierr = DMGetPeriodicity(dm, &isper, &maxCell, &L, &bd);CHKERRQ(ierr);
106590b157c4SStefano Zampini   ierr = DMSetPeriodicity(dmParallel, isper, maxCell, L, bd);CHKERRQ(ierr);
10669318fe57SMatthew G. Knepley   ierr = DMGetCoordinateDM(dm, &cdm);CHKERRQ(ierr);
10679318fe57SMatthew G. Knepley   ierr = DMGetCoordinateDM(dmParallel, &cdmParallel);CHKERRQ(ierr);
10689318fe57SMatthew G. Knepley   ierr = DMCopyDisc(cdm, cdmParallel);CHKERRQ(ierr);
10690df0e737SMichael Lange   PetscFunctionReturn(0);
10700df0e737SMichael Lange }
10710df0e737SMichael Lange 
107224cc2ca5SMatthew G. Knepley static PetscErrorCode DMPlexDistributeLabels(DM dm, PetscSF migrationSF, DM dmParallel)
10730df0e737SMichael Lange {
1074df0420ecSMatthew G. Knepley   DM_Plex         *mesh = (DM_Plex*) dm->data;
10750df0e737SMichael Lange   MPI_Comm         comm;
10767980c9d4SMatthew G. Knepley   DMLabel          depthLabel;
10770df0e737SMichael Lange   PetscMPIInt      rank;
10787980c9d4SMatthew G. Knepley   PetscInt         depth, d, numLabels, numLocalLabels, l;
1079df0420ecSMatthew G. Knepley   PetscBool        hasLabels = PETSC_FALSE, lsendDepth, sendDepth;
1080df0420ecSMatthew G. Knepley   PetscObjectState depthState = -1;
10810df0e737SMichael Lange   PetscErrorCode   ierr;
10820df0e737SMichael Lange 
10830df0e737SMichael Lange   PetscFunctionBegin;
10840df0e737SMichael Lange   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
10850c86c063SLisandro Dalcin   PetscValidHeaderSpecific(dmParallel, DM_CLASSID, 3);
10860c86c063SLisandro Dalcin 
10870df0e737SMichael Lange   ierr = PetscLogEventBegin(DMPLEX_DistributeLabels,dm,0,0,0);CHKERRQ(ierr);
10880df0e737SMichael Lange   ierr = PetscObjectGetComm((PetscObject)dm, &comm);CHKERRQ(ierr);
1089ffc4695bSBarry Smith   ierr = MPI_Comm_rank(comm, &rank);CHKERRMPI(ierr);
10900df0e737SMichael Lange 
1091df0420ecSMatthew G. Knepley   /* If the user has changed the depth label, communicate it instead */
10927980c9d4SMatthew G. Knepley   ierr = DMPlexGetDepth(dm, &depth);CHKERRQ(ierr);
10937980c9d4SMatthew G. Knepley   ierr = DMPlexGetDepthLabel(dm, &depthLabel);CHKERRQ(ierr);
1094d67d17b1SMatthew G. Knepley   if (depthLabel) {ierr = PetscObjectStateGet((PetscObject) depthLabel, &depthState);CHKERRQ(ierr);}
1095df0420ecSMatthew G. Knepley   lsendDepth = mesh->depthState != depthState ? PETSC_TRUE : PETSC_FALSE;
1096820f2d46SBarry Smith   ierr = MPIU_Allreduce(&lsendDepth, &sendDepth, 1, MPIU_BOOL, MPI_LOR, comm);CHKERRMPI(ierr);
1097df0420ecSMatthew G. Knepley   if (sendDepth) {
1098a7998027SVaclav Hapla     ierr = DMPlexGetDepthLabel(dmParallel, &dmParallel->depthLabel);CHKERRQ(ierr);
1099a7998027SVaclav Hapla     ierr = DMRemoveLabelBySelf(dmParallel, &dmParallel->depthLabel, PETSC_FALSE);CHKERRQ(ierr);
1100df0420ecSMatthew G. Knepley   }
1101d995df53SMatthew G. Knepley   /* Everyone must have either the same number of labels, or none */
1102c58f1c22SToby Isaac   ierr = DMGetNumLabels(dm, &numLocalLabels);CHKERRQ(ierr);
1103d995df53SMatthew G. Knepley   numLabels = numLocalLabels;
1104ffc4695bSBarry Smith   ierr = MPI_Bcast(&numLabels, 1, MPIU_INT, 0, comm);CHKERRMPI(ierr);
1105627847f0SMatthew G. Knepley   if (numLabels == numLocalLabels) hasLabels = PETSC_TRUE;
11065d80c0bfSVaclav Hapla   for (l = 0; l < numLabels; ++l) {
1107bdd2d751SMichael Lange     DMLabel     label = NULL, labelNew = NULL;
110883e10cb3SLisandro Dalcin     PetscBool   isDepth, lisOutput = PETSC_TRUE, isOutput;
1109d67d17b1SMatthew G. Knepley     const char *name = NULL;
11100df0e737SMichael Lange 
1111d67d17b1SMatthew G. Knepley     if (hasLabels) {
1112d67d17b1SMatthew G. Knepley       ierr = DMGetLabelByNum(dm, l, &label);CHKERRQ(ierr);
11130df0e737SMichael Lange       /* Skip "depth" because it is recreated */
1114d67d17b1SMatthew G. Knepley       ierr = PetscObjectGetName((PetscObject) label, &name);CHKERRQ(ierr);
1115d67d17b1SMatthew G. Knepley       ierr = PetscStrcmp(name, "depth", &isDepth);CHKERRQ(ierr);
1116d67d17b1SMatthew G. Knepley     }
1117ffc4695bSBarry Smith     ierr = MPI_Bcast(&isDepth, 1, MPIU_BOOL, 0, comm);CHKERRMPI(ierr);
111883e10cb3SLisandro Dalcin     if (isDepth && !sendDepth) continue;
1119bdd2d751SMichael Lange     ierr = DMLabelDistribute(label, migrationSF, &labelNew);CHKERRQ(ierr);
112083e10cb3SLisandro Dalcin     if (isDepth) {
11217980c9d4SMatthew G. Knepley       /* Put in any missing strata which can occur if users are managing the depth label themselves */
11227980c9d4SMatthew G. Knepley       PetscInt gdepth;
11237980c9d4SMatthew G. Knepley 
1124820f2d46SBarry Smith       ierr = MPIU_Allreduce(&depth, &gdepth, 1, MPIU_INT, MPI_MAX, comm);CHKERRMPI(ierr);
11252c71b3e2SJacob Faibussowitsch       PetscCheckFalse((depth >= 0) && (gdepth != depth),PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Inconsistent Plex depth %d != %d", depth, gdepth);
11267980c9d4SMatthew G. Knepley       for (d = 0; d <= gdepth; ++d) {
11277980c9d4SMatthew G. Knepley         PetscBool has;
11287980c9d4SMatthew G. Knepley 
11297980c9d4SMatthew G. Knepley         ierr = DMLabelHasStratum(labelNew, d, &has);CHKERRQ(ierr);
113083e10cb3SLisandro Dalcin         if (!has) {ierr = DMLabelAddStratum(labelNew, d);CHKERRQ(ierr);}
11317980c9d4SMatthew G. Knepley       }
11327980c9d4SMatthew G. Knepley     }
1133c58f1c22SToby Isaac     ierr = DMAddLabel(dmParallel, labelNew);CHKERRQ(ierr);
113483e10cb3SLisandro Dalcin     /* Put the output flag in the new label */
1135d67d17b1SMatthew G. Knepley     if (hasLabels) {ierr = DMGetLabelOutput(dm, name, &lisOutput);CHKERRQ(ierr);}
1136820f2d46SBarry Smith     ierr = MPIU_Allreduce(&lisOutput, &isOutput, 1, MPIU_BOOL, MPI_LAND, comm);CHKERRMPI(ierr);
1137d67d17b1SMatthew G. Knepley     ierr = PetscObjectGetName((PetscObject) labelNew, &name);CHKERRQ(ierr);
1138d67d17b1SMatthew G. Knepley     ierr = DMSetLabelOutput(dmParallel, name, isOutput);CHKERRQ(ierr);
113908f633c4SVaclav Hapla     ierr = DMLabelDestroy(&labelNew);CHKERRQ(ierr);
11400df0e737SMichael Lange   }
11410df0e737SMichael Lange   ierr = PetscLogEventEnd(DMPLEX_DistributeLabels,dm,0,0,0);CHKERRQ(ierr);
11420df0e737SMichael Lange   PetscFunctionReturn(0);
11430df0e737SMichael Lange }
11440df0e737SMichael Lange 
114524cc2ca5SMatthew G. Knepley static PetscErrorCode DMPlexDistributeSetupTree(DM dm, PetscSF migrationSF, ISLocalToGlobalMapping original, ISLocalToGlobalMapping renumbering, DM dmParallel)
1146a6f36705SMichael Lange {
114715078cd4SMichael Lange   DM_Plex        *mesh  = (DM_Plex*) dm->data;
114815078cd4SMichael Lange   DM_Plex        *pmesh = (DM_Plex*) (dmParallel)->data;
1149a6f36705SMichael Lange   MPI_Comm        comm;
1150a6f36705SMichael Lange   DM              refTree;
1151a6f36705SMichael Lange   PetscSection    origParentSection, newParentSection;
1152a6f36705SMichael Lange   PetscInt        *origParents, *origChildIDs;
1153a6f36705SMichael Lange   PetscBool       flg;
1154a6f36705SMichael Lange   PetscErrorCode  ierr;
1155a6f36705SMichael Lange 
1156a6f36705SMichael Lange   PetscFunctionBegin;
1157a6f36705SMichael Lange   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
11580c86c063SLisandro Dalcin   PetscValidHeaderSpecific(dmParallel, DM_CLASSID, 5);
1159a6f36705SMichael Lange   ierr = PetscObjectGetComm((PetscObject)dm, &comm);CHKERRQ(ierr);
1160a6f36705SMichael Lange 
1161a6f36705SMichael Lange   /* Set up tree */
1162a6f36705SMichael Lange   ierr = DMPlexGetReferenceTree(dm,&refTree);CHKERRQ(ierr);
1163a6f36705SMichael Lange   ierr = DMPlexSetReferenceTree(dmParallel,refTree);CHKERRQ(ierr);
1164a6f36705SMichael Lange   ierr = DMPlexGetTree(dm,&origParentSection,&origParents,&origChildIDs,NULL,NULL);CHKERRQ(ierr);
1165a6f36705SMichael Lange   if (origParentSection) {
1166a6f36705SMichael Lange     PetscInt        pStart, pEnd;
116708633170SToby Isaac     PetscInt        *newParents, *newChildIDs, *globParents;
1168a6f36705SMichael Lange     PetscInt        *remoteOffsetsParents, newParentSize;
1169a6f36705SMichael Lange     PetscSF         parentSF;
1170a6f36705SMichael Lange 
1171a6f36705SMichael Lange     ierr = DMPlexGetChart(dmParallel, &pStart, &pEnd);CHKERRQ(ierr);
1172a6f36705SMichael Lange     ierr = PetscSectionCreate(PetscObjectComm((PetscObject)dmParallel),&newParentSection);CHKERRQ(ierr);
1173a6f36705SMichael Lange     ierr = PetscSectionSetChart(newParentSection,pStart,pEnd);CHKERRQ(ierr);
1174a6f36705SMichael Lange     ierr = PetscSFDistributeSection(migrationSF, origParentSection, &remoteOffsetsParents, newParentSection);CHKERRQ(ierr);
1175a6f36705SMichael Lange     ierr = PetscSFCreateSectionSF(migrationSF, origParentSection, remoteOffsetsParents, newParentSection, &parentSF);CHKERRQ(ierr);
11768a713f3bSLawrence Mitchell     ierr = PetscFree(remoteOffsetsParents);CHKERRQ(ierr);
1177a6f36705SMichael Lange     ierr = PetscSectionGetStorageSize(newParentSection,&newParentSize);CHKERRQ(ierr);
1178a6f36705SMichael Lange     ierr = PetscMalloc2(newParentSize,&newParents,newParentSize,&newChildIDs);CHKERRQ(ierr);
117908633170SToby Isaac     if (original) {
118008633170SToby Isaac       PetscInt numParents;
118108633170SToby Isaac 
118208633170SToby Isaac       ierr = PetscSectionGetStorageSize(origParentSection,&numParents);CHKERRQ(ierr);
118308633170SToby Isaac       ierr = PetscMalloc1(numParents,&globParents);CHKERRQ(ierr);
118408633170SToby Isaac       ierr = ISLocalToGlobalMappingApplyBlock(original, numParents, origParents, globParents);CHKERRQ(ierr);
118508633170SToby Isaac     }
118608633170SToby Isaac     else {
118708633170SToby Isaac       globParents = origParents;
118808633170SToby Isaac     }
1189ad227feaSJunchao Zhang     ierr = PetscSFBcastBegin(parentSF, MPIU_INT, globParents, newParents,MPI_REPLACE);CHKERRQ(ierr);
1190ad227feaSJunchao Zhang     ierr = PetscSFBcastEnd(parentSF, MPIU_INT, globParents, newParents,MPI_REPLACE);CHKERRQ(ierr);
119108633170SToby Isaac     if (original) {
119208633170SToby Isaac       ierr = PetscFree(globParents);CHKERRQ(ierr);
119308633170SToby Isaac     }
1194ad227feaSJunchao Zhang     ierr = PetscSFBcastBegin(parentSF, MPIU_INT, origChildIDs, newChildIDs,MPI_REPLACE);CHKERRQ(ierr);
1195ad227feaSJunchao Zhang     ierr = PetscSFBcastEnd(parentSF, MPIU_INT, origChildIDs, newChildIDs,MPI_REPLACE);CHKERRQ(ierr);
1196a6f36705SMichael Lange     ierr = ISGlobalToLocalMappingApplyBlock(renumbering,IS_GTOLM_MASK, newParentSize, newParents, NULL, newParents);CHKERRQ(ierr);
119776bd3646SJed Brown     if (PetscDefined(USE_DEBUG)) {
11984a54e071SToby Isaac       PetscInt  p;
11994a54e071SToby Isaac       PetscBool valid = PETSC_TRUE;
12004a54e071SToby Isaac       for (p = 0; p < newParentSize; ++p) {
12014a54e071SToby Isaac         if (newParents[p] < 0) {valid = PETSC_FALSE; ierr = PetscPrintf(PETSC_COMM_SELF, "Point %d not in overlap SF\n", p);CHKERRQ(ierr);}
12024a54e071SToby Isaac       }
12032c71b3e2SJacob Faibussowitsch       PetscCheckFalse(!valid,PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Invalid global to local map");
12044a54e071SToby Isaac     }
1205c5929fdfSBarry Smith     ierr = PetscOptionsHasName(((PetscObject) dm)->options,((PetscObject) dm)->prefix, "-parents_view", &flg);CHKERRQ(ierr);
1206a6f36705SMichael Lange     if (flg) {
1207a6f36705SMichael Lange       ierr = PetscPrintf(comm, "Serial Parent Section: \n");CHKERRQ(ierr);
1208a8c5bd36SStefano Zampini       ierr = PetscSectionView(origParentSection, PETSC_VIEWER_STDOUT_(comm));CHKERRQ(ierr);
1209a6f36705SMichael Lange       ierr = PetscPrintf(comm, "Parallel Parent Section: \n");CHKERRQ(ierr);
1210a8c5bd36SStefano Zampini       ierr = PetscSectionView(newParentSection, PETSC_VIEWER_STDOUT_(comm));CHKERRQ(ierr);
1211a6f36705SMichael Lange       ierr = PetscSFView(parentSF, NULL);CHKERRQ(ierr);
1212a6f36705SMichael Lange     }
1213a6f36705SMichael Lange     ierr = DMPlexSetTree(dmParallel,newParentSection,newParents,newChildIDs);CHKERRQ(ierr);
1214a6f36705SMichael Lange     ierr = PetscSectionDestroy(&newParentSection);CHKERRQ(ierr);
1215a6f36705SMichael Lange     ierr = PetscFree2(newParents,newChildIDs);CHKERRQ(ierr);
1216a6f36705SMichael Lange     ierr = PetscSFDestroy(&parentSF);CHKERRQ(ierr);
1217a6f36705SMichael Lange   }
121815078cd4SMichael Lange   pmesh->useAnchors = mesh->useAnchors;
1219a6f36705SMichael Lange   PetscFunctionReturn(0);
1220a6f36705SMichael Lange }
12210df0e737SMichael Lange 
122224cc2ca5SMatthew G. Knepley PETSC_UNUSED static PetscErrorCode DMPlexDistributeSF(DM dm, PetscSF migrationSF, DM dmParallel)
12234eca1733SMichael Lange {
12249852e123SBarry Smith   PetscMPIInt            rank, size;
12254eca1733SMichael Lange   MPI_Comm               comm;
12264eca1733SMichael Lange   PetscErrorCode         ierr;
12274eca1733SMichael Lange 
12284eca1733SMichael Lange   PetscFunctionBegin;
12294eca1733SMichael Lange   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
12300c86c063SLisandro Dalcin   PetscValidHeaderSpecific(dmParallel, DM_CLASSID, 3);
12314eca1733SMichael Lange 
12324eca1733SMichael Lange   /* Create point SF for parallel mesh */
12334eca1733SMichael Lange   ierr = PetscLogEventBegin(DMPLEX_DistributeSF,dm,0,0,0);CHKERRQ(ierr);
12344eca1733SMichael Lange   ierr = PetscObjectGetComm((PetscObject)dm, &comm);CHKERRQ(ierr);
1235ffc4695bSBarry Smith   ierr = MPI_Comm_rank(comm, &rank);CHKERRMPI(ierr);
1236ffc4695bSBarry Smith   ierr = MPI_Comm_size(comm, &size);CHKERRMPI(ierr);
12374eca1733SMichael Lange   {
12384eca1733SMichael Lange     const PetscInt *leaves;
12394eca1733SMichael Lange     PetscSFNode    *remotePoints, *rowners, *lowners;
12404eca1733SMichael Lange     PetscInt        numRoots, numLeaves, numGhostPoints = 0, p, gp, *ghostPoints;
12414eca1733SMichael Lange     PetscInt        pStart, pEnd;
12424eca1733SMichael Lange 
12434eca1733SMichael Lange     ierr = DMPlexGetChart(dmParallel, &pStart, &pEnd);CHKERRQ(ierr);
12444eca1733SMichael Lange     ierr = PetscSFGetGraph(migrationSF, &numRoots, &numLeaves, &leaves, NULL);CHKERRQ(ierr);
12454eca1733SMichael Lange     ierr = PetscMalloc2(numRoots,&rowners,numLeaves,&lowners);CHKERRQ(ierr);
12464eca1733SMichael Lange     for (p=0; p<numRoots; p++) {
12474eca1733SMichael Lange       rowners[p].rank  = -1;
12484eca1733SMichael Lange       rowners[p].index = -1;
12494eca1733SMichael Lange     }
1250ad227feaSJunchao Zhang     ierr = PetscSFBcastBegin(migrationSF, MPIU_2INT, rowners, lowners,MPI_REPLACE);CHKERRQ(ierr);
1251ad227feaSJunchao Zhang     ierr = PetscSFBcastEnd(migrationSF, MPIU_2INT, rowners, lowners,MPI_REPLACE);CHKERRQ(ierr);
12524eca1733SMichael Lange     for (p = 0; p < numLeaves; ++p) {
12534eca1733SMichael Lange       if (lowners[p].rank < 0 || lowners[p].rank == rank) { /* Either put in a bid or we know we own it */
12544eca1733SMichael Lange         lowners[p].rank  = rank;
12554eca1733SMichael Lange         lowners[p].index = leaves ? leaves[p] : p;
12564eca1733SMichael Lange       } else if (lowners[p].rank >= 0) { /* Point already claimed so flag so that MAXLOC does not listen to us */
12574eca1733SMichael Lange         lowners[p].rank  = -2;
12584eca1733SMichael Lange         lowners[p].index = -2;
12594eca1733SMichael Lange       }
12604eca1733SMichael Lange     }
12614eca1733SMichael Lange     for (p=0; p<numRoots; p++) { /* Root must not participate in the rediction, flag so that MAXLOC does not use */
12624eca1733SMichael Lange       rowners[p].rank  = -3;
12634eca1733SMichael Lange       rowners[p].index = -3;
12644eca1733SMichael Lange     }
12654eca1733SMichael Lange     ierr = PetscSFReduceBegin(migrationSF, MPIU_2INT, lowners, rowners, MPI_MAXLOC);CHKERRQ(ierr);
12664eca1733SMichael Lange     ierr = PetscSFReduceEnd(migrationSF, MPIU_2INT, lowners, rowners, MPI_MAXLOC);CHKERRQ(ierr);
1267ad227feaSJunchao Zhang     ierr = PetscSFBcastBegin(migrationSF, MPIU_2INT, rowners, lowners,MPI_REPLACE);CHKERRQ(ierr);
1268ad227feaSJunchao Zhang     ierr = PetscSFBcastEnd(migrationSF, MPIU_2INT, rowners, lowners,MPI_REPLACE);CHKERRQ(ierr);
12694eca1733SMichael Lange     for (p = 0; p < numLeaves; ++p) {
12702c71b3e2SJacob Faibussowitsch       PetscCheckFalse(lowners[p].rank < 0 || lowners[p].index < 0,PETSC_COMM_SELF,PETSC_ERR_PLIB,"Cell partition corrupt: point not claimed");
12714eca1733SMichael Lange       if (lowners[p].rank != rank) ++numGhostPoints;
12724eca1733SMichael Lange     }
12734eca1733SMichael Lange     ierr = PetscMalloc1(numGhostPoints, &ghostPoints);CHKERRQ(ierr);
12744eca1733SMichael Lange     ierr = PetscMalloc1(numGhostPoints, &remotePoints);CHKERRQ(ierr);
12754eca1733SMichael Lange     for (p = 0, gp = 0; p < numLeaves; ++p) {
12764eca1733SMichael Lange       if (lowners[p].rank != rank) {
12774eca1733SMichael Lange         ghostPoints[gp]        = leaves ? leaves[p] : p;
12784eca1733SMichael Lange         remotePoints[gp].rank  = lowners[p].rank;
12794eca1733SMichael Lange         remotePoints[gp].index = lowners[p].index;
12804eca1733SMichael Lange         ++gp;
12814eca1733SMichael Lange       }
12824eca1733SMichael Lange     }
12834eca1733SMichael Lange     ierr = PetscFree2(rowners,lowners);CHKERRQ(ierr);
12844eca1733SMichael Lange     ierr = PetscSFSetGraph((dmParallel)->sf, pEnd - pStart, numGhostPoints, ghostPoints, PETSC_OWN_POINTER, remotePoints, PETSC_OWN_POINTER);CHKERRQ(ierr);
12854eca1733SMichael Lange     ierr = PetscSFSetFromOptions((dmParallel)->sf);CHKERRQ(ierr);
12864eca1733SMichael Lange   }
12871cf84007SMatthew G. Knepley   {
12881cf84007SMatthew G. Knepley     PetscBool useCone, useClosure, useAnchors;
12891cf84007SMatthew G. Knepley 
1290b0441da4SMatthew G. Knepley     ierr = DMGetBasicAdjacency(dm, &useCone, &useClosure);CHKERRQ(ierr);
1291b0441da4SMatthew G. Knepley     ierr = DMSetBasicAdjacency(dmParallel, useCone, useClosure);CHKERRQ(ierr);
12921cf84007SMatthew G. Knepley     ierr = DMPlexGetAdjacencyUseAnchors(dm, &useAnchors);CHKERRQ(ierr);
12931cf84007SMatthew G. Knepley     ierr = DMPlexSetAdjacencyUseAnchors(dmParallel, useAnchors);CHKERRQ(ierr);
12941cf84007SMatthew G. Knepley   }
12954eca1733SMichael Lange   ierr = PetscLogEventEnd(DMPLEX_DistributeSF,dm,0,0,0);CHKERRQ(ierr);
12964eca1733SMichael Lange   PetscFunctionReturn(0);
12974eca1733SMichael Lange }
12984eca1733SMichael Lange 
129998ba2d7fSLawrence Mitchell /*@
130098ba2d7fSLawrence Mitchell   DMPlexSetPartitionBalance - Should distribution of the DM attempt to balance the shared point partition?
130198ba2d7fSLawrence Mitchell 
130298ba2d7fSLawrence Mitchell   Input Parameters:
130398ba2d7fSLawrence Mitchell + dm - The DMPlex object
130498ba2d7fSLawrence Mitchell - flg - Balance the partition?
130598ba2d7fSLawrence Mitchell 
130698ba2d7fSLawrence Mitchell   Level: intermediate
130798ba2d7fSLawrence Mitchell 
130898ba2d7fSLawrence Mitchell .seealso: DMPlexDistribute(), DMPlexGetPartitionBalance()
130998ba2d7fSLawrence Mitchell @*/
131098ba2d7fSLawrence Mitchell PetscErrorCode DMPlexSetPartitionBalance(DM dm, PetscBool flg)
131198ba2d7fSLawrence Mitchell {
131298ba2d7fSLawrence Mitchell   DM_Plex *mesh = (DM_Plex *)dm->data;
131398ba2d7fSLawrence Mitchell 
131498ba2d7fSLawrence Mitchell   PetscFunctionBegin;
131598ba2d7fSLawrence Mitchell   mesh->partitionBalance = flg;
131698ba2d7fSLawrence Mitchell   PetscFunctionReturn(0);
131798ba2d7fSLawrence Mitchell }
131898ba2d7fSLawrence Mitchell 
131998ba2d7fSLawrence Mitchell /*@
132098ba2d7fSLawrence Mitchell   DMPlexGetPartitionBalance - Does distribution of the DM attempt to balance the shared point partition?
132198ba2d7fSLawrence Mitchell 
132298ba2d7fSLawrence Mitchell   Input Parameter:
1323a2b725a8SWilliam Gropp . dm - The DMPlex object
132498ba2d7fSLawrence Mitchell 
132598ba2d7fSLawrence Mitchell   Output Parameter:
1326a2b725a8SWilliam Gropp . flg - Balance the partition?
132798ba2d7fSLawrence Mitchell 
132898ba2d7fSLawrence Mitchell   Level: intermediate
132998ba2d7fSLawrence Mitchell 
133098ba2d7fSLawrence Mitchell .seealso: DMPlexDistribute(), DMPlexSetPartitionBalance()
133198ba2d7fSLawrence Mitchell @*/
133298ba2d7fSLawrence Mitchell PetscErrorCode DMPlexGetPartitionBalance(DM dm, PetscBool *flg)
133398ba2d7fSLawrence Mitchell {
133498ba2d7fSLawrence Mitchell   DM_Plex *mesh = (DM_Plex *)dm->data;
133598ba2d7fSLawrence Mitchell 
133698ba2d7fSLawrence Mitchell   PetscFunctionBegin;
133798ba2d7fSLawrence Mitchell   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
1338534a8f05SLisandro Dalcin   PetscValidBoolPointer(flg, 2);
133998ba2d7fSLawrence Mitchell   *flg = mesh->partitionBalance;
134098ba2d7fSLawrence Mitchell   PetscFunctionReturn(0);
134198ba2d7fSLawrence Mitchell }
134298ba2d7fSLawrence Mitchell 
1343fc02256fSLawrence Mitchell typedef struct {
1344fc02256fSLawrence Mitchell   PetscInt vote, rank, index;
1345fc02256fSLawrence Mitchell } Petsc3Int;
1346fc02256fSLawrence Mitchell 
1347fc02256fSLawrence Mitchell /* MaxLoc, but carry a third piece of information around */
13482eb0eadbSSatish Balay static void MPIAPI MaxLocCarry(void *in_, void *inout_, PetscMPIInt *len_, MPI_Datatype *dtype)
1349fc02256fSLawrence Mitchell {
1350fc02256fSLawrence Mitchell   Petsc3Int *a = (Petsc3Int *)inout_;
1351fc02256fSLawrence Mitchell   Petsc3Int *b = (Petsc3Int *)in_;
1352fc02256fSLawrence Mitchell   PetscInt i, len = *len_;
1353fc02256fSLawrence Mitchell   for (i = 0; i < len; i++) {
1354fc02256fSLawrence Mitchell     if (a[i].vote < b[i].vote) {
1355fc02256fSLawrence Mitchell       a[i].vote = b[i].vote;
1356fc02256fSLawrence Mitchell       a[i].rank = b[i].rank;
1357fc02256fSLawrence Mitchell       a[i].index = b[i].index;
1358fc02256fSLawrence Mitchell     } else if (a[i].vote <= b[i].vote) {
1359fc02256fSLawrence Mitchell       if (a[i].rank >= b[i].rank) {
1360fc02256fSLawrence Mitchell         a[i].rank = b[i].rank;
1361fc02256fSLawrence Mitchell         a[i].index = b[i].index;
1362fc02256fSLawrence Mitchell       }
1363fc02256fSLawrence Mitchell     }
1364fc02256fSLawrence Mitchell   }
1365fc02256fSLawrence Mitchell }
1366fc02256fSLawrence Mitchell 
1367f5bf2dbfSMichael Lange /*@C
1368a8c5bd36SStefano Zampini   DMPlexCreatePointSF - Build a point SF from an SF describing a point migration
1369f5bf2dbfSMichael Lange 
1370064ec1f3Sprj-   Input Parameters:
1371f5bf2dbfSMichael Lange + dm          - The source DMPlex object
1372f5bf2dbfSMichael Lange . migrationSF - The star forest that describes the parallel point remapping
1373d8d19677SJose E. Roman - ownership   - Flag causing a vote to determine point ownership
1374f5bf2dbfSMichael Lange 
1375f5bf2dbfSMichael Lange   Output Parameter:
1376d8d19677SJose E. Roman . pointSF     - The star forest describing the point overlap in the remapped DM
1377f5bf2dbfSMichael Lange 
13783618482eSVaclav Hapla   Notes:
13793618482eSVaclav Hapla   Output pointSF is guaranteed to have the array of local indices (leaves) sorted.
13803618482eSVaclav Hapla 
1381f5bf2dbfSMichael Lange   Level: developer
1382f5bf2dbfSMichael Lange 
1383f5bf2dbfSMichael Lange .seealso: DMPlexDistribute(), DMPlexDistributeOverlap()
1384f5bf2dbfSMichael Lange @*/
1385f5bf2dbfSMichael Lange PetscErrorCode DMPlexCreatePointSF(DM dm, PetscSF migrationSF, PetscBool ownership, PetscSF *pointSF)
1386f5bf2dbfSMichael Lange {
138723193802SMatthew G. Knepley   PetscMPIInt        rank, size;
13881627f6ccSMichael Lange   PetscInt           p, nroots, nleaves, idx, npointLeaves;
1389f5bf2dbfSMichael Lange   PetscInt          *pointLocal;
1390f5bf2dbfSMichael Lange   const PetscInt    *leaves;
1391f5bf2dbfSMichael Lange   const PetscSFNode *roots;
1392f5bf2dbfSMichael Lange   PetscSFNode       *rootNodes, *leafNodes, *pointRemote;
139323193802SMatthew G. Knepley   Vec                shifts;
1394cae3e4f3SLawrence Mitchell   const PetscInt     numShifts = 13759;
139523193802SMatthew G. Knepley   const PetscScalar *shift = NULL;
139623193802SMatthew G. Knepley   const PetscBool    shiftDebug = PETSC_FALSE;
139798ba2d7fSLawrence Mitchell   PetscBool          balance;
1398f5bf2dbfSMichael Lange   PetscErrorCode     ierr;
1399f5bf2dbfSMichael Lange 
1400f5bf2dbfSMichael Lange   PetscFunctionBegin;
1401f5bf2dbfSMichael Lange   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
1402ffc4695bSBarry Smith   ierr = MPI_Comm_rank(PetscObjectComm((PetscObject) dm), &rank);CHKERRMPI(ierr);
1403ffc4695bSBarry Smith   ierr = MPI_Comm_size(PetscObjectComm((PetscObject) dm), &size);CHKERRMPI(ierr);
140430b0ce1bSStefano Zampini   ierr = PetscLogEventBegin(DMPLEX_CreatePointSF,dm,0,0,0);CHKERRQ(ierr);
1405f5bf2dbfSMichael Lange 
140698ba2d7fSLawrence Mitchell   ierr = DMPlexGetPartitionBalance(dm, &balance);CHKERRQ(ierr);
1407f5bf2dbfSMichael Lange   ierr = PetscSFGetGraph(migrationSF, &nroots, &nleaves, &leaves, &roots);CHKERRQ(ierr);
1408f5bf2dbfSMichael Lange   ierr = PetscMalloc2(nroots, &rootNodes, nleaves, &leafNodes);CHKERRQ(ierr);
1409f5bf2dbfSMichael Lange   if (ownership) {
1410fc02256fSLawrence Mitchell     MPI_Op       op;
1411fc02256fSLawrence Mitchell     MPI_Datatype datatype;
1412fc02256fSLawrence Mitchell     Petsc3Int   *rootVote = NULL, *leafVote = NULL;
141323193802SMatthew G. Knepley     /* If balancing, we compute a random cyclic shift of the rank for each remote point. That way, the max will evenly distribute among ranks. */
141498ba2d7fSLawrence Mitchell     if (balance) {
141523193802SMatthew G. Knepley       PetscRandom r;
141623193802SMatthew G. Knepley 
141723193802SMatthew G. Knepley       ierr = PetscRandomCreate(PETSC_COMM_SELF, &r);CHKERRQ(ierr);
1418cae3e4f3SLawrence Mitchell       ierr = PetscRandomSetInterval(r, 0, 2467*size);CHKERRQ(ierr);
141923193802SMatthew G. Knepley       ierr = VecCreate(PETSC_COMM_SELF, &shifts);CHKERRQ(ierr);
142023193802SMatthew G. Knepley       ierr = VecSetSizes(shifts, numShifts, numShifts);CHKERRQ(ierr);
142123193802SMatthew G. Knepley       ierr = VecSetType(shifts, VECSTANDARD);CHKERRQ(ierr);
142223193802SMatthew G. Knepley       ierr = VecSetRandom(shifts, r);CHKERRQ(ierr);
142323193802SMatthew G. Knepley       ierr = PetscRandomDestroy(&r);CHKERRQ(ierr);
142423193802SMatthew G. Knepley       ierr = VecGetArrayRead(shifts, &shift);CHKERRQ(ierr);
142523193802SMatthew G. Knepley     }
142623193802SMatthew G. Knepley 
1427fc02256fSLawrence Mitchell     ierr = PetscMalloc1(nroots, &rootVote);CHKERRQ(ierr);
1428fc02256fSLawrence Mitchell     ierr = PetscMalloc1(nleaves, &leafVote);CHKERRQ(ierr);
142923193802SMatthew G. Knepley     /* Point ownership vote: Process with highest rank owns shared points */
1430f5bf2dbfSMichael Lange     for (p = 0; p < nleaves; ++p) {
143123193802SMatthew G. Knepley       if (shiftDebug) {
1432e7bcd635SMatthew G. Knepley         ierr = PetscSynchronizedPrintf(PetscObjectComm((PetscObject) dm), "[%d] Point %D RemotePoint %D Shift %D MyRank %D\n", rank, leaves ? leaves[p] : p, roots[p].index, (PetscInt) PetscRealPart(shift[roots[p].index%numShifts]), (rank + (shift ? (PetscInt) PetscRealPart(shift[roots[p].index%numShifts]) : 0))%size);CHKERRQ(ierr);
143323193802SMatthew G. Knepley       }
1434f5bf2dbfSMichael Lange       /* Either put in a bid or we know we own it */
1435fc02256fSLawrence Mitchell       leafVote[p].vote  = (rank + (shift ? (PetscInt) PetscRealPart(shift[roots[p].index%numShifts]) : 0))%size;
1436fc02256fSLawrence Mitchell       leafVote[p].rank = rank;
1437fc02256fSLawrence Mitchell       leafVote[p].index = p;
1438f5bf2dbfSMichael Lange     }
1439f5bf2dbfSMichael Lange     for (p = 0; p < nroots; p++) {
14401627f6ccSMichael Lange       /* Root must not participate in the reduction, flag so that MAXLOC does not use */
1441fc02256fSLawrence Mitchell       rootVote[p].vote  = -3;
1442fc02256fSLawrence Mitchell       rootVote[p].rank  = -3;
1443fc02256fSLawrence Mitchell       rootVote[p].index = -3;
1444f5bf2dbfSMichael Lange     }
1445ffc4695bSBarry Smith     ierr = MPI_Type_contiguous(3, MPIU_INT, &datatype);CHKERRMPI(ierr);
1446ffc4695bSBarry Smith     ierr = MPI_Type_commit(&datatype);CHKERRMPI(ierr);
1447ffc4695bSBarry Smith     ierr = MPI_Op_create(&MaxLocCarry, 1, &op);CHKERRMPI(ierr);
1448fc02256fSLawrence Mitchell     ierr = PetscSFReduceBegin(migrationSF, datatype, leafVote, rootVote, op);CHKERRQ(ierr);
1449fc02256fSLawrence Mitchell     ierr = PetscSFReduceEnd(migrationSF, datatype, leafVote, rootVote, op);CHKERRQ(ierr);
1450ffc4695bSBarry Smith     ierr = MPI_Op_free(&op);CHKERRMPI(ierr);
1451ffc4695bSBarry Smith     ierr = MPI_Type_free(&datatype);CHKERRMPI(ierr);
1452c091126eSLawrence Mitchell     for (p = 0; p < nroots; p++) {
1453fc02256fSLawrence Mitchell       rootNodes[p].rank = rootVote[p].rank;
1454fc02256fSLawrence Mitchell       rootNodes[p].index = rootVote[p].index;
1455c091126eSLawrence Mitchell     }
1456fc02256fSLawrence Mitchell     ierr = PetscFree(leafVote);CHKERRQ(ierr);
1457fc02256fSLawrence Mitchell     ierr = PetscFree(rootVote);CHKERRQ(ierr);
1458f5bf2dbfSMichael Lange   } else {
1459f5bf2dbfSMichael Lange     for (p = 0; p < nroots; p++) {
1460f5bf2dbfSMichael Lange       rootNodes[p].index = -1;
1461f5bf2dbfSMichael Lange       rootNodes[p].rank = rank;
1462fc02256fSLawrence Mitchell     }
1463f5bf2dbfSMichael Lange     for (p = 0; p < nleaves; p++) {
1464f5bf2dbfSMichael Lange       /* Write new local id into old location */
1465f5bf2dbfSMichael Lange       if (roots[p].rank == rank) {
14666462276dSToby Isaac         rootNodes[roots[p].index].index = leaves ? leaves[p] : p;
1467f5bf2dbfSMichael Lange       }
1468f5bf2dbfSMichael Lange     }
1469f5bf2dbfSMichael Lange   }
1470ad227feaSJunchao Zhang   ierr = PetscSFBcastBegin(migrationSF, MPIU_2INT, rootNodes, leafNodes,MPI_REPLACE);CHKERRQ(ierr);
1471ad227feaSJunchao Zhang   ierr = PetscSFBcastEnd(migrationSF, MPIU_2INT, rootNodes, leafNodes,MPI_REPLACE);CHKERRQ(ierr);
1472f5bf2dbfSMichael Lange 
147323193802SMatthew G. Knepley   for (npointLeaves = 0, p = 0; p < nleaves; p++) {
1474b0e1264bSMatthew G. Knepley     if (leafNodes[p].rank != rank) npointLeaves++;
147523193802SMatthew G. Knepley   }
14761627f6ccSMichael Lange   ierr = PetscMalloc1(npointLeaves, &pointLocal);CHKERRQ(ierr);
14771627f6ccSMichael Lange   ierr = PetscMalloc1(npointLeaves, &pointRemote);CHKERRQ(ierr);
1478f5bf2dbfSMichael Lange   for (idx = 0, p = 0; p < nleaves; p++) {
1479b0e1264bSMatthew G. Knepley     if (leafNodes[p].rank != rank) {
14803618482eSVaclav Hapla       /* Note that pointLocal is automatically sorted as it is sublist of 0, ..., nleaves-1 */
1481f5bf2dbfSMichael Lange       pointLocal[idx] = p;
1482f5bf2dbfSMichael Lange       pointRemote[idx] = leafNodes[p];
1483f5bf2dbfSMichael Lange       idx++;
1484f5bf2dbfSMichael Lange     }
1485f5bf2dbfSMichael Lange   }
148623193802SMatthew G. Knepley   if (shift) {
148723193802SMatthew G. Knepley     ierr = VecRestoreArrayRead(shifts, &shift);CHKERRQ(ierr);
148823193802SMatthew G. Knepley     ierr = VecDestroy(&shifts);CHKERRQ(ierr);
148923193802SMatthew G. Knepley   }
149023193802SMatthew G. Knepley   if (shiftDebug) {ierr = PetscSynchronizedFlush(PetscObjectComm((PetscObject) dm), PETSC_STDOUT);CHKERRQ(ierr);}
1491f5bf2dbfSMichael Lange   ierr = PetscSFCreate(PetscObjectComm((PetscObject) dm), pointSF);CHKERRQ(ierr);
14921627f6ccSMichael Lange   ierr = PetscSFSetFromOptions(*pointSF);CHKERRQ(ierr);
1493f5bf2dbfSMichael Lange   ierr = PetscSFSetGraph(*pointSF, nleaves, npointLeaves, pointLocal, PETSC_OWN_POINTER, pointRemote, PETSC_OWN_POINTER);CHKERRQ(ierr);
1494f5bf2dbfSMichael Lange   ierr = PetscFree2(rootNodes, leafNodes);CHKERRQ(ierr);
149530b0ce1bSStefano Zampini   ierr = PetscLogEventEnd(DMPLEX_CreatePointSF,dm,0,0,0);CHKERRQ(ierr);
1496f5bf2dbfSMichael Lange   PetscFunctionReturn(0);
1497f5bf2dbfSMichael Lange }
1498f5bf2dbfSMichael Lange 
149915078cd4SMichael Lange /*@C
150015078cd4SMichael Lange   DMPlexMigrate  - Migrates internal DM data over the supplied star forest
150115078cd4SMichael Lange 
1502d083f849SBarry Smith   Collective on dm
150383655b49SVáclav Hapla 
1504064ec1f3Sprj-   Input Parameters:
150515078cd4SMichael Lange + dm       - The source DMPlex object
1506d8d19677SJose E. Roman - sf       - The star forest communication context describing the migration pattern
150715078cd4SMichael Lange 
150815078cd4SMichael Lange   Output Parameter:
1509d8d19677SJose E. Roman . targetDM - The target DMPlex object
151015078cd4SMichael Lange 
1511b9f40539SMichael Lange   Level: intermediate
151215078cd4SMichael Lange 
151315078cd4SMichael Lange .seealso: DMPlexDistribute(), DMPlexDistributeOverlap()
151415078cd4SMichael Lange @*/
1515b9f40539SMichael Lange PetscErrorCode DMPlexMigrate(DM dm, PetscSF sf, DM targetDM)
151615078cd4SMichael Lange {
1517b9f40539SMichael Lange   MPI_Comm               comm;
1518cc1750acSStefano Zampini   PetscInt               dim, cdim, nroots;
1519b9f40539SMichael Lange   PetscSF                sfPoint;
152015078cd4SMichael Lange   ISLocalToGlobalMapping ltogMigration;
1521ac04eaf7SToby Isaac   ISLocalToGlobalMapping ltogOriginal = NULL;
1522b9f40539SMichael Lange   PetscBool              flg;
152315078cd4SMichael Lange   PetscErrorCode         ierr;
152415078cd4SMichael Lange 
152515078cd4SMichael Lange   PetscFunctionBegin;
152615078cd4SMichael Lange   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
15271b858b30SMichael Lange   ierr = PetscLogEventBegin(DMPLEX_Migrate, dm, 0, 0, 0);CHKERRQ(ierr);
1528b9f40539SMichael Lange   ierr = PetscObjectGetComm((PetscObject) dm, &comm);CHKERRQ(ierr);
152915078cd4SMichael Lange   ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr);
153015078cd4SMichael Lange   ierr = DMSetDimension(targetDM, dim);CHKERRQ(ierr);
1531cc1750acSStefano Zampini   ierr = DMGetCoordinateDim(dm, &cdim);CHKERRQ(ierr);
1532cc1750acSStefano Zampini   ierr = DMSetCoordinateDim(targetDM, cdim);CHKERRQ(ierr);
153315078cd4SMichael Lange 
1534bfb0467fSMichael Lange   /* Check for a one-to-all distribution pattern */
1535b9f40539SMichael Lange   ierr = DMGetPointSF(dm, &sfPoint);CHKERRQ(ierr);
1536b9f40539SMichael Lange   ierr = PetscSFGetGraph(sfPoint, &nroots, NULL, NULL, NULL);CHKERRQ(ierr);
1537bfb0467fSMichael Lange   if (nroots >= 0) {
1538b9f40539SMichael Lange     IS        isOriginal;
1539ac04eaf7SToby Isaac     PetscInt  n, size, nleaves;
1540ac04eaf7SToby Isaac     PetscInt  *numbering_orig, *numbering_new;
1541367003a6SStefano Zampini 
1542b9f40539SMichael Lange     /* Get the original point numbering */
1543b9f40539SMichael Lange     ierr = DMPlexCreatePointNumbering(dm, &isOriginal);CHKERRQ(ierr);
1544b9f40539SMichael Lange     ierr = ISLocalToGlobalMappingCreateIS(isOriginal, &ltogOriginal);CHKERRQ(ierr);
1545b9f40539SMichael Lange     ierr = ISLocalToGlobalMappingGetSize(ltogOriginal, &size);CHKERRQ(ierr);
1546b9f40539SMichael Lange     ierr = ISLocalToGlobalMappingGetBlockIndices(ltogOriginal, (const PetscInt**)&numbering_orig);CHKERRQ(ierr);
1547b9f40539SMichael Lange     /* Convert to positive global numbers */
1548b9f40539SMichael Lange     for (n=0; n<size; n++) {if (numbering_orig[n] < 0) numbering_orig[n] = -(numbering_orig[n]+1);}
1549b9f40539SMichael Lange     /* Derive the new local-to-global mapping from the old one */
1550b9f40539SMichael Lange     ierr = PetscSFGetGraph(sf, NULL, &nleaves, NULL, NULL);CHKERRQ(ierr);
1551b9f40539SMichael Lange     ierr = PetscMalloc1(nleaves, &numbering_new);CHKERRQ(ierr);
1552ad227feaSJunchao Zhang     ierr = PetscSFBcastBegin(sf, MPIU_INT, numbering_orig, numbering_new,MPI_REPLACE);CHKERRQ(ierr);
1553ad227feaSJunchao Zhang     ierr = PetscSFBcastEnd(sf, MPIU_INT, numbering_orig, numbering_new,MPI_REPLACE);CHKERRQ(ierr);
15546e0288c8SStefano Zampini     ierr = ISLocalToGlobalMappingCreate(comm, 1, nleaves, numbering_new, PETSC_OWN_POINTER, &ltogMigration);CHKERRQ(ierr);
1555b9f40539SMichael Lange     ierr = ISLocalToGlobalMappingRestoreIndices(ltogOriginal, (const PetscInt**)&numbering_orig);CHKERRQ(ierr);
1556b9f40539SMichael Lange     ierr = ISDestroy(&isOriginal);CHKERRQ(ierr);
155715078cd4SMichael Lange   } else {
1558bfb0467fSMichael Lange     /* One-to-all distribution pattern: We can derive LToG from SF */
155915078cd4SMichael Lange     ierr = ISLocalToGlobalMappingCreateSF(sf, 0, &ltogMigration);CHKERRQ(ierr);
156015078cd4SMichael Lange   }
1561c5929fdfSBarry Smith   ierr = PetscOptionsHasName(((PetscObject) dm)->options,((PetscObject) dm)->prefix, "-partition_view", &flg);CHKERRQ(ierr);
1562b9f40539SMichael Lange   if (flg) {
1563b9f40539SMichael Lange     ierr = PetscPrintf(comm, "Point renumbering for DM migration:\n");CHKERRQ(ierr);
1564b9f40539SMichael Lange     ierr = ISLocalToGlobalMappingView(ltogMigration, NULL);CHKERRQ(ierr);
1565b9f40539SMichael Lange   }
156615078cd4SMichael Lange   /* Migrate DM data to target DM */
1567ac04eaf7SToby Isaac   ierr = DMPlexDistributeCones(dm, sf, ltogOriginal, ltogMigration, targetDM);CHKERRQ(ierr);
156815078cd4SMichael Lange   ierr = DMPlexDistributeLabels(dm, sf, targetDM);CHKERRQ(ierr);
15690dc1530dSSander Arens   ierr = DMPlexDistributeCoordinates(dm, sf, targetDM);CHKERRQ(ierr);
157008633170SToby Isaac   ierr = DMPlexDistributeSetupTree(dm, sf, ltogOriginal, ltogMigration, targetDM);CHKERRQ(ierr);
1571ac04eaf7SToby Isaac   ierr = ISLocalToGlobalMappingDestroy(&ltogOriginal);CHKERRQ(ierr);
1572302440fdSBarry Smith   ierr = ISLocalToGlobalMappingDestroy(&ltogMigration);CHKERRQ(ierr);
15731b858b30SMichael Lange   ierr = PetscLogEventEnd(DMPLEX_Migrate, dm, 0, 0, 0);CHKERRQ(ierr);
157415078cd4SMichael Lange   PetscFunctionReturn(0);
157515078cd4SMichael Lange }
157615078cd4SMichael Lange 
15773b8f15a2SMatthew G. Knepley /*@C
157870034214SMatthew G. Knepley   DMPlexDistribute - Distributes the mesh and any associated sections.
157970034214SMatthew G. Knepley 
1580d083f849SBarry Smith   Collective on dm
158170034214SMatthew G. Knepley 
1582064ec1f3Sprj-   Input Parameters:
158370034214SMatthew G. Knepley + dm  - The original DMPlex object
158470034214SMatthew G. Knepley - overlap - The overlap of partitions, 0 is the default
158570034214SMatthew G. Knepley 
1586064ec1f3Sprj-   Output Parameters:
1587f4ae5380SJed Brown + sf - The PetscSF used for point distribution, or NULL if not needed
1588f4ae5380SJed Brown - dmParallel - The distributed DMPlex object
158970034214SMatthew G. Knepley 
1590f4ae5380SJed Brown   Note: If the mesh was not distributed, the output dmParallel will be NULL.
159170034214SMatthew G. Knepley 
1592b0441da4SMatthew G. Knepley   The user can control the definition of adjacency for the mesh using DMSetAdjacency(). They should choose the combination appropriate for the function
159370034214SMatthew G. Knepley   representation on the mesh.
159470034214SMatthew G. Knepley 
159570034214SMatthew G. Knepley   Level: intermediate
159670034214SMatthew G. Knepley 
1597cb54e036SVaclav Hapla .seealso: DMPlexCreate(), DMSetAdjacency(), DMPlexGetOverlap()
159870034214SMatthew G. Knepley @*/
159980cf41d5SMatthew G. Knepley PetscErrorCode DMPlexDistribute(DM dm, PetscInt overlap, PetscSF *sf, DM *dmParallel)
160070034214SMatthew G. Knepley {
160170034214SMatthew G. Knepley   MPI_Comm               comm;
160215078cd4SMichael Lange   PetscPartitioner       partitioner;
1603f8987ae8SMichael Lange   IS                     cellPart;
1604f8987ae8SMichael Lange   PetscSection           cellPartSection;
1605cf86098cSMatthew G. Knepley   DM                     dmCoord;
1606f8987ae8SMichael Lange   DMLabel                lblPartition, lblMigration;
1607874ddda9SLisandro Dalcin   PetscSF                sfMigration, sfStratified, sfPoint;
160898ba2d7fSLawrence Mitchell   PetscBool              flg, balance;
1609874ddda9SLisandro Dalcin   PetscMPIInt            rank, size;
161070034214SMatthew G. Knepley   PetscErrorCode         ierr;
161170034214SMatthew G. Knepley 
161270034214SMatthew G. Knepley   PetscFunctionBegin;
161370034214SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
1614d5c515a1SMatthew G. Knepley   PetscValidLogicalCollectiveInt(dm, overlap, 2);
1615d5c515a1SMatthew G. Knepley   if (sf) PetscValidPointer(sf,3);
1616d5c515a1SMatthew G. Knepley   PetscValidPointer(dmParallel,4);
161770034214SMatthew G. Knepley 
16180c86c063SLisandro Dalcin   if (sf) *sf = NULL;
16190c86c063SLisandro Dalcin   *dmParallel = NULL;
162070034214SMatthew G. Knepley   ierr = PetscObjectGetComm((PetscObject)dm,&comm);CHKERRQ(ierr);
1621ffc4695bSBarry Smith   ierr = MPI_Comm_rank(comm, &rank);CHKERRMPI(ierr);
1622ffc4695bSBarry Smith   ierr = MPI_Comm_size(comm, &size);CHKERRMPI(ierr);
16230c86c063SLisandro Dalcin   if (size == 1) PetscFunctionReturn(0);
162470034214SMatthew G. Knepley 
16250c86c063SLisandro Dalcin   ierr = PetscLogEventBegin(DMPLEX_Distribute,dm,0,0,0);CHKERRQ(ierr);
162615078cd4SMichael Lange   /* Create cell partition */
162767eb269bSLisandro Dalcin   ierr = PetscLogEventBegin(DMPLEX_Partition,dm,0,0,0);CHKERRQ(ierr);
162877623264SMatthew G. Knepley   ierr = PetscSectionCreate(comm, &cellPartSection);CHKERRQ(ierr);
162915078cd4SMichael Lange   ierr = DMPlexGetPartitioner(dm, &partitioner);CHKERRQ(ierr);
16303c41b853SStefano Zampini   ierr = PetscPartitionerDMPlexPartition(partitioner, dm, NULL, cellPartSection, &cellPart);CHKERRQ(ierr);
163130b0ce1bSStefano Zampini   ierr = PetscLogEventBegin(DMPLEX_PartSelf,dm,0,0,0);CHKERRQ(ierr);
1632f8987ae8SMichael Lange   {
1633f8987ae8SMichael Lange     /* Convert partition to DMLabel */
1634825f8a23SLisandro Dalcin     IS             is;
1635825f8a23SLisandro Dalcin     PetscHSetI     ht;
1636f8987ae8SMichael Lange     const PetscInt *points;
16378e330a33SStefano Zampini     PetscInt       *iranks;
16388e330a33SStefano Zampini     PetscInt       pStart, pEnd, proc, npoints, poff = 0, nranks;
1639825f8a23SLisandro Dalcin 
1640d67d17b1SMatthew G. Knepley     ierr = DMLabelCreate(PETSC_COMM_SELF, "Point Partition", &lblPartition);CHKERRQ(ierr);
1641825f8a23SLisandro Dalcin     /* Preallocate strata */
1642825f8a23SLisandro Dalcin     ierr = PetscHSetICreate(&ht);CHKERRQ(ierr);
1643825f8a23SLisandro Dalcin     ierr = PetscSectionGetChart(cellPartSection, &pStart, &pEnd);CHKERRQ(ierr);
1644825f8a23SLisandro Dalcin     for (proc = pStart; proc < pEnd; proc++) {
1645825f8a23SLisandro Dalcin       ierr = PetscSectionGetDof(cellPartSection, proc, &npoints);CHKERRQ(ierr);
1646825f8a23SLisandro Dalcin       if (npoints) {ierr = PetscHSetIAdd(ht, proc);CHKERRQ(ierr);}
1647825f8a23SLisandro Dalcin     }
1648825f8a23SLisandro Dalcin     ierr = PetscHSetIGetSize(ht, &nranks);CHKERRQ(ierr);
1649825f8a23SLisandro Dalcin     ierr = PetscMalloc1(nranks, &iranks);CHKERRQ(ierr);
1650825f8a23SLisandro Dalcin     ierr = PetscHSetIGetElems(ht, &poff, iranks);CHKERRQ(ierr);
1651825f8a23SLisandro Dalcin     ierr = PetscHSetIDestroy(&ht);CHKERRQ(ierr);
1652825f8a23SLisandro Dalcin     ierr = DMLabelAddStrata(lblPartition, nranks, iranks);CHKERRQ(ierr);
1653825f8a23SLisandro Dalcin     ierr = PetscFree(iranks);CHKERRQ(ierr);
1654825f8a23SLisandro Dalcin     /* Inline DMPlexPartitionLabelClosure() */
1655f8987ae8SMichael Lange     ierr = ISGetIndices(cellPart, &points);CHKERRQ(ierr);
1656f8987ae8SMichael Lange     ierr = PetscSectionGetChart(cellPartSection, &pStart, &pEnd);CHKERRQ(ierr);
1657f8987ae8SMichael Lange     for (proc = pStart; proc < pEnd; proc++) {
1658f8987ae8SMichael Lange       ierr = PetscSectionGetDof(cellPartSection, proc, &npoints);CHKERRQ(ierr);
1659825f8a23SLisandro Dalcin       if (!npoints) continue;
1660825f8a23SLisandro Dalcin       ierr = PetscSectionGetOffset(cellPartSection, proc, &poff);CHKERRQ(ierr);
16618e330a33SStefano Zampini       ierr = DMPlexClosurePoints_Private(dm, npoints, points+poff, &is);CHKERRQ(ierr);
1662825f8a23SLisandro Dalcin       ierr = DMLabelSetStratumIS(lblPartition, proc, is);CHKERRQ(ierr);
1663825f8a23SLisandro Dalcin       ierr = ISDestroy(&is);CHKERRQ(ierr);
1664f8987ae8SMichael Lange     }
1665f8987ae8SMichael Lange     ierr = ISRestoreIndices(cellPart, &points);CHKERRQ(ierr);
1666f8987ae8SMichael Lange   }
166730b0ce1bSStefano Zampini   ierr = PetscLogEventEnd(DMPLEX_PartSelf,dm,0,0,0);CHKERRQ(ierr);
16686e203dd9SStefano Zampini 
1669d67d17b1SMatthew G. Knepley   ierr = DMLabelCreate(PETSC_COMM_SELF, "Point migration", &lblMigration);CHKERRQ(ierr);
1670874ddda9SLisandro Dalcin   ierr = DMPlexPartitionLabelInvert(dm, lblPartition, NULL, lblMigration);CHKERRQ(ierr);
1671302440fdSBarry Smith   ierr = DMPlexPartitionLabelCreateSF(dm, lblMigration, &sfMigration);CHKERRQ(ierr);
167243f7d02bSMichael Lange   ierr = DMPlexStratifyMigrationSF(dm, sfMigration, &sfStratified);CHKERRQ(ierr);
167343f7d02bSMichael Lange   ierr = PetscSFDestroy(&sfMigration);CHKERRQ(ierr);
167443f7d02bSMichael Lange   sfMigration = sfStratified;
167530b0ce1bSStefano Zampini   ierr = PetscSFSetUp(sfMigration);CHKERRQ(ierr);
167667eb269bSLisandro Dalcin   ierr = PetscLogEventEnd(DMPLEX_Partition,dm,0,0,0);CHKERRQ(ierr);
1677c5929fdfSBarry Smith   ierr = PetscOptionsHasName(((PetscObject) dm)->options,((PetscObject) dm)->prefix, "-partition_view", &flg);CHKERRQ(ierr);
167870034214SMatthew G. Knepley   if (flg) {
1679a8c5bd36SStefano Zampini     ierr = DMLabelView(lblPartition, PETSC_VIEWER_STDOUT_(comm));CHKERRQ(ierr);
1680a8c5bd36SStefano Zampini     ierr = PetscSFView(sfMigration, PETSC_VIEWER_STDOUT_(comm));CHKERRQ(ierr);
168170034214SMatthew G. Knepley   }
1682f8987ae8SMichael Lange 
168315078cd4SMichael Lange   /* Create non-overlapping parallel DM and migrate internal data */
168470034214SMatthew G. Knepley   ierr = DMPlexCreate(comm, dmParallel);CHKERRQ(ierr);
168570034214SMatthew G. Knepley   ierr = PetscObjectSetName((PetscObject) *dmParallel, "Parallel Mesh");CHKERRQ(ierr);
1686b9f40539SMichael Lange   ierr = DMPlexMigrate(dm, sfMigration, *dmParallel);CHKERRQ(ierr);
168770034214SMatthew G. Knepley 
1688a157612eSMichael Lange   /* Build the point SF without overlap */
168998ba2d7fSLawrence Mitchell   ierr = DMPlexGetPartitionBalance(dm, &balance);CHKERRQ(ierr);
169098ba2d7fSLawrence Mitchell   ierr = DMPlexSetPartitionBalance(*dmParallel, balance);CHKERRQ(ierr);
16911627f6ccSMichael Lange   ierr = DMPlexCreatePointSF(*dmParallel, sfMigration, PETSC_TRUE, &sfPoint);CHKERRQ(ierr);
1692f5bf2dbfSMichael Lange   ierr = DMSetPointSF(*dmParallel, sfPoint);CHKERRQ(ierr);
1693cf86098cSMatthew G. Knepley   ierr = DMGetCoordinateDM(*dmParallel, &dmCoord);CHKERRQ(ierr);
1694cf86098cSMatthew G. Knepley   if (dmCoord) {ierr = DMSetPointSF(dmCoord, sfPoint);CHKERRQ(ierr);}
1695a8c5bd36SStefano Zampini   if (flg) {ierr = PetscSFView(sfPoint, NULL);CHKERRQ(ierr);}
169670034214SMatthew G. Knepley 
1697a157612eSMichael Lange   if (overlap > 0) {
169815078cd4SMichael Lange     DM                 dmOverlap;
169957f290daSMatthew G. Knepley     PetscInt           nroots, nleaves, noldleaves, l;
170057f290daSMatthew G. Knepley     const PetscInt    *oldLeaves;
170157f290daSMatthew G. Knepley     PetscSFNode       *newRemote, *permRemote;
170215078cd4SMichael Lange     const PetscSFNode *oldRemote;
170315078cd4SMichael Lange     PetscSF            sfOverlap, sfOverlapPoint;
1704524e35f8SStefano Zampini 
1705a157612eSMichael Lange     /* Add the partition overlap to the distributed DM */
1706b9f40539SMichael Lange     ierr = DMPlexDistributeOverlap(*dmParallel, overlap, &sfOverlap, &dmOverlap);CHKERRQ(ierr);
1707a157612eSMichael Lange     ierr = DMDestroy(dmParallel);CHKERRQ(ierr);
1708a157612eSMichael Lange     *dmParallel = dmOverlap;
1709c389ea9fSToby Isaac     if (flg) {
17103d822a50SMichael Lange       ierr = PetscPrintf(comm, "Overlap Migration SF:\n");CHKERRQ(ierr);
171115078cd4SMichael Lange       ierr = PetscSFView(sfOverlap, NULL);CHKERRQ(ierr);
1712c389ea9fSToby Isaac     }
171343331d4aSMichael Lange 
1714f8987ae8SMichael Lange     /* Re-map the migration SF to establish the full migration pattern */
171557f290daSMatthew G. Knepley     ierr = PetscSFGetGraph(sfMigration, &nroots, &noldleaves, &oldLeaves, &oldRemote);CHKERRQ(ierr);
171615078cd4SMichael Lange     ierr = PetscSFGetGraph(sfOverlap, NULL, &nleaves, NULL, NULL);CHKERRQ(ierr);
171743331d4aSMichael Lange     ierr = PetscMalloc1(nleaves, &newRemote);CHKERRQ(ierr);
171857f290daSMatthew G. Knepley     /* oldRemote: original root point mapping to original leaf point
171957f290daSMatthew G. Knepley        newRemote: original leaf point mapping to overlapped leaf point */
172057f290daSMatthew G. Knepley     if (oldLeaves) {
172173e69a6aSMatthew G. Knepley       /* After stratification, the migration remotes may not be in root (canonical) order, so we reorder using the leaf numbering */
172273e69a6aSMatthew G. Knepley       ierr = PetscMalloc1(noldleaves, &permRemote);CHKERRQ(ierr);
172357f290daSMatthew G. Knepley       for (l = 0; l < noldleaves; ++l) permRemote[oldLeaves[l]] = oldRemote[l];
172457f290daSMatthew G. Knepley       oldRemote = permRemote;
172557f290daSMatthew G. Knepley     }
1726ad227feaSJunchao Zhang     ierr = PetscSFBcastBegin(sfOverlap, MPIU_2INT, oldRemote, newRemote,MPI_REPLACE);CHKERRQ(ierr);
1727ad227feaSJunchao Zhang     ierr = PetscSFBcastEnd(sfOverlap, MPIU_2INT, oldRemote, newRemote,MPI_REPLACE);CHKERRQ(ierr);
172857f290daSMatthew G. Knepley     if (oldLeaves) {ierr = PetscFree(oldRemote);CHKERRQ(ierr);}
172915078cd4SMichael Lange     ierr = PetscSFCreate(comm, &sfOverlapPoint);CHKERRQ(ierr);
173015078cd4SMichael Lange     ierr = PetscSFSetGraph(sfOverlapPoint, nroots, nleaves, NULL, PETSC_OWN_POINTER, newRemote, PETSC_OWN_POINTER);CHKERRQ(ierr);
173115078cd4SMichael Lange     ierr = PetscSFDestroy(&sfOverlap);CHKERRQ(ierr);
1732f8987ae8SMichael Lange     ierr = PetscSFDestroy(&sfMigration);CHKERRQ(ierr);
173315078cd4SMichael Lange     sfMigration = sfOverlapPoint;
1734c389ea9fSToby Isaac   }
1735bf5244c7SMatthew G. Knepley   /* Cleanup Partition */
1736f8987ae8SMichael Lange   ierr = DMLabelDestroy(&lblPartition);CHKERRQ(ierr);
1737f8987ae8SMichael Lange   ierr = DMLabelDestroy(&lblMigration);CHKERRQ(ierr);
17384eca1733SMichael Lange   ierr = PetscSectionDestroy(&cellPartSection);CHKERRQ(ierr);
17394eca1733SMichael Lange   ierr = ISDestroy(&cellPart);CHKERRQ(ierr);
174045480ffeSMatthew G. Knepley   /* Copy discretization */
174145480ffeSMatthew G. Knepley   ierr = DMCopyDisc(dm, *dmParallel);CHKERRQ(ierr);
174266fe0bfeSMatthew G. Knepley   /* Create sfNatural */
174366fe0bfeSMatthew G. Knepley   if (dm->useNatural) {
174466fe0bfeSMatthew G. Knepley     PetscSection section;
174566fe0bfeSMatthew G. Knepley 
174692fd8e1eSJed Brown     ierr = DMGetLocalSection(dm, &section);CHKERRQ(ierr);
17470c1f158bSMatthew G. Knepley     ierr = DMPlexCreateGlobalToNaturalSF(*dmParallel, section, sfMigration, &(*dmParallel)->sfNatural);CHKERRQ(ierr);
17480e663481SBlaise Bourdin     ierr = DMSetUseNatural(*dmParallel, PETSC_TRUE);CHKERRQ(ierr);
174966fe0bfeSMatthew G. Knepley   }
1750*e600fa54SMatthew G. Knepley   ierr = DMPlexCopy_Internal(dm, PETSC_TRUE, *dmParallel);CHKERRQ(ierr);
1751721cbd76SMatthew G. Knepley   /* Cleanup */
1752f8987ae8SMichael Lange   if (sf) {*sf = sfMigration;}
1753f8987ae8SMichael Lange   else    {ierr = PetscSFDestroy(&sfMigration);CHKERRQ(ierr);}
1754f5bf2dbfSMichael Lange   ierr = PetscSFDestroy(&sfPoint);CHKERRQ(ierr);
175570034214SMatthew G. Knepley   ierr = PetscLogEventEnd(DMPLEX_Distribute,dm,0,0,0);CHKERRQ(ierr);
175670034214SMatthew G. Knepley   PetscFunctionReturn(0);
175770034214SMatthew G. Knepley }
1758a157612eSMichael Lange 
1759a157612eSMichael Lange /*@C
176024cc2ca5SMatthew G. Knepley   DMPlexDistributeOverlap - Add partition overlap to a distributed non-overlapping DM.
1761a157612eSMichael Lange 
1762d083f849SBarry Smith   Collective on dm
1763a157612eSMichael Lange 
1764064ec1f3Sprj-   Input Parameters:
1765064ec1f3Sprj- + dm  - The non-overlapping distributed DMPlex object
176657fe9a49SVaclav Hapla - overlap - The overlap of partitions (the same on all ranks)
1767a157612eSMichael Lange 
1768064ec1f3Sprj-   Output Parameters:
1769a157612eSMichael Lange + sf - The PetscSF used for point distribution
1770a157612eSMichael Lange - dmOverlap - The overlapping distributed DMPlex object, or NULL
1771a157612eSMichael Lange 
1772dccdeccaSVaclav Hapla   Notes:
1773dccdeccaSVaclav Hapla   If the mesh was not distributed, the return value is NULL.
1774a157612eSMichael Lange 
1775b0441da4SMatthew G. Knepley   The user can control the definition of adjacency for the mesh using DMSetAdjacency(). They should choose the combination appropriate for the function
1776a157612eSMichael Lange   representation on the mesh.
1777a157612eSMichael Lange 
1778dccdeccaSVaclav Hapla   Level: advanced
1779a157612eSMichael Lange 
1780cb54e036SVaclav Hapla .seealso: DMPlexCreate(), DMSetAdjacency(), DMPlexDistribute(), DMPlexCreateOverlapLabel(), DMPlexGetOverlap()
1781a157612eSMichael Lange @*/
1782b9f40539SMichael Lange PetscErrorCode DMPlexDistributeOverlap(DM dm, PetscInt overlap, PetscSF *sf, DM *dmOverlap)
1783a157612eSMichael Lange {
1784a157612eSMichael Lange   MPI_Comm               comm;
17853567eaeeSMatthew G. Knepley   PetscMPIInt            size, rank;
1786a157612eSMichael Lange   PetscSection           rootSection, leafSection;
1787a157612eSMichael Lange   IS                     rootrank, leafrank;
1788cf86098cSMatthew G. Knepley   DM                     dmCoord;
1789a9f1d5b2SMichael Lange   DMLabel                lblOverlap;
1790f5bf2dbfSMichael Lange   PetscSF                sfOverlap, sfStratified, sfPoint;
1791a157612eSMichael Lange   PetscErrorCode         ierr;
1792a157612eSMichael Lange 
1793a157612eSMichael Lange   PetscFunctionBegin;
1794a157612eSMichael Lange   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
179557fe9a49SVaclav Hapla   PetscValidLogicalCollectiveInt(dm, overlap, 2);
1796a157612eSMichael Lange   if (sf) PetscValidPointer(sf, 3);
1797a157612eSMichael Lange   PetscValidPointer(dmOverlap, 4);
1798a157612eSMichael Lange 
17990c86c063SLisandro Dalcin   if (sf) *sf = NULL;
18000c86c063SLisandro Dalcin   *dmOverlap  = NULL;
1801a157612eSMichael Lange   ierr = PetscObjectGetComm((PetscObject)dm,&comm);CHKERRQ(ierr);
1802ffc4695bSBarry Smith   ierr = MPI_Comm_size(comm, &size);CHKERRMPI(ierr);
1803ffc4695bSBarry Smith   ierr = MPI_Comm_rank(comm, &rank);CHKERRMPI(ierr);
18040c86c063SLisandro Dalcin   if (size == 1) PetscFunctionReturn(0);
1805a157612eSMichael Lange 
18060c86c063SLisandro Dalcin   ierr = PetscLogEventBegin(DMPLEX_DistributeOverlap, dm, 0, 0, 0);CHKERRQ(ierr);
1807a157612eSMichael Lange   /* Compute point overlap with neighbouring processes on the distributed DM */
180867eb269bSLisandro Dalcin   ierr = PetscLogEventBegin(DMPLEX_Partition,dm,0,0,0);CHKERRQ(ierr);
1809a157612eSMichael Lange   ierr = PetscSectionCreate(comm, &rootSection);CHKERRQ(ierr);
1810a157612eSMichael Lange   ierr = PetscSectionCreate(comm, &leafSection);CHKERRQ(ierr);
1811a157612eSMichael Lange   ierr = DMPlexDistributeOwnership(dm, rootSection, &rootrank, leafSection, &leafrank);CHKERRQ(ierr);
1812dccdeccaSVaclav Hapla   ierr = DMPlexCreateOverlapLabel(dm, overlap, rootSection, rootrank, leafSection, leafrank, &lblOverlap);CHKERRQ(ierr);
1813a9f1d5b2SMichael Lange   /* Convert overlap label to stratified migration SF */
1814a9f1d5b2SMichael Lange   ierr = DMPlexPartitionLabelCreateSF(dm, lblOverlap, &sfOverlap);CHKERRQ(ierr);
1815a9f1d5b2SMichael Lange   ierr = DMPlexStratifyMigrationSF(dm, sfOverlap, &sfStratified);CHKERRQ(ierr);
1816a9f1d5b2SMichael Lange   ierr = PetscSFDestroy(&sfOverlap);CHKERRQ(ierr);
1817a9f1d5b2SMichael Lange   sfOverlap = sfStratified;
1818a9f1d5b2SMichael Lange   ierr = PetscObjectSetName((PetscObject) sfOverlap, "Overlap SF");CHKERRQ(ierr);
1819a9f1d5b2SMichael Lange   ierr = PetscSFSetFromOptions(sfOverlap);CHKERRQ(ierr);
1820a9f1d5b2SMichael Lange 
182115fff7beSMatthew G. Knepley   ierr = PetscSectionDestroy(&rootSection);CHKERRQ(ierr);
182215fff7beSMatthew G. Knepley   ierr = PetscSectionDestroy(&leafSection);CHKERRQ(ierr);
182315fff7beSMatthew G. Knepley   ierr = ISDestroy(&rootrank);CHKERRQ(ierr);
182415fff7beSMatthew G. Knepley   ierr = ISDestroy(&leafrank);CHKERRQ(ierr);
182567eb269bSLisandro Dalcin   ierr = PetscLogEventEnd(DMPLEX_Partition,dm,0,0,0);CHKERRQ(ierr);
1826a157612eSMichael Lange 
1827a157612eSMichael Lange   /* Build the overlapping DM */
1828a157612eSMichael Lange   ierr = DMPlexCreate(comm, dmOverlap);CHKERRQ(ierr);
1829a157612eSMichael Lange   ierr = PetscObjectSetName((PetscObject) *dmOverlap, "Parallel Mesh");CHKERRQ(ierr);
1830a9f1d5b2SMichael Lange   ierr = DMPlexMigrate(dm, sfOverlap, *dmOverlap);CHKERRQ(ierr);
1831cb54e036SVaclav Hapla   /* Store the overlap in the new DM */
1832cb54e036SVaclav Hapla   ((DM_Plex*)(*dmOverlap)->data)->overlap = overlap + ((DM_Plex*)dm->data)->overlap;
1833f5bf2dbfSMichael Lange   /* Build the new point SF */
18341627f6ccSMichael Lange   ierr = DMPlexCreatePointSF(*dmOverlap, sfOverlap, PETSC_FALSE, &sfPoint);CHKERRQ(ierr);
1835f5bf2dbfSMichael Lange   ierr = DMSetPointSF(*dmOverlap, sfPoint);CHKERRQ(ierr);
1836cf86098cSMatthew G. Knepley   ierr = DMGetCoordinateDM(*dmOverlap, &dmCoord);CHKERRQ(ierr);
1837cf86098cSMatthew G. Knepley   if (dmCoord) {ierr = DMSetPointSF(dmCoord, sfPoint);CHKERRQ(ierr);}
1838f5bf2dbfSMichael Lange   ierr = PetscSFDestroy(&sfPoint);CHKERRQ(ierr);
1839a157612eSMichael Lange   /* Cleanup overlap partition */
1840a9f1d5b2SMichael Lange   ierr = DMLabelDestroy(&lblOverlap);CHKERRQ(ierr);
1841a9f1d5b2SMichael Lange   if (sf) *sf = sfOverlap;
1842a9f1d5b2SMichael Lange   else    {ierr = PetscSFDestroy(&sfOverlap);CHKERRQ(ierr);}
18431b858b30SMichael Lange   ierr = PetscLogEventEnd(DMPLEX_DistributeOverlap, dm, 0, 0, 0);CHKERRQ(ierr);
1844a157612eSMichael Lange   PetscFunctionReturn(0);
1845a157612eSMichael Lange }
18466462276dSToby Isaac 
1847cb54e036SVaclav Hapla PetscErrorCode DMPlexGetOverlap_Plex(DM dm, PetscInt *overlap)
1848cb54e036SVaclav Hapla {
1849cb54e036SVaclav Hapla   DM_Plex        *mesh  = (DM_Plex*) dm->data;
1850cb54e036SVaclav Hapla 
1851cb54e036SVaclav Hapla   PetscFunctionBegin;
1852cb54e036SVaclav Hapla   *overlap = mesh->overlap;
1853cb54e036SVaclav Hapla   PetscFunctionReturn(0);
1854cb54e036SVaclav Hapla }
1855cb54e036SVaclav Hapla 
1856cb54e036SVaclav Hapla /*@
1857cb54e036SVaclav Hapla   DMPlexGetOverlap - Get the DMPlex partition overlap.
1858cb54e036SVaclav Hapla 
1859cb54e036SVaclav Hapla   Not collective
1860cb54e036SVaclav Hapla 
1861cb54e036SVaclav Hapla   Input Parameter:
1862cb54e036SVaclav Hapla . dm - The DM
1863cb54e036SVaclav Hapla 
1864064ec1f3Sprj-   Output Parameter:
1865cb54e036SVaclav Hapla . overlap - The overlap of this DM
1866cb54e036SVaclav Hapla 
1867cb54e036SVaclav Hapla   Level: intermediate
1868cb54e036SVaclav Hapla 
1869cb54e036SVaclav Hapla .seealso: DMPlexDistribute(), DMPlexDistributeOverlap(), DMPlexCreateOverlapLabel()
1870cb54e036SVaclav Hapla @*/
1871cb54e036SVaclav Hapla PetscErrorCode DMPlexGetOverlap(DM dm, PetscInt *overlap)
1872cb54e036SVaclav Hapla {
1873cb54e036SVaclav Hapla   PetscErrorCode     ierr;
1874cb54e036SVaclav Hapla 
1875cb54e036SVaclav Hapla   PetscFunctionBegin;
1876cb54e036SVaclav Hapla   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
1877cb54e036SVaclav Hapla   ierr = PetscUseMethod(dm,"DMPlexGetOverlap_C",(DM,PetscInt*),(dm,overlap));CHKERRQ(ierr);
1878cb54e036SVaclav Hapla   PetscFunctionReturn(0);
1879cb54e036SVaclav Hapla }
1880cb54e036SVaclav Hapla 
1881*e600fa54SMatthew G. Knepley PetscErrorCode DMPlexDistributeSetDefault_Plex(DM dm, PetscBool dist)
1882*e600fa54SMatthew G. Knepley {
1883*e600fa54SMatthew G. Knepley   DM_Plex *mesh = (DM_Plex *) dm->data;
1884*e600fa54SMatthew G. Knepley 
1885*e600fa54SMatthew G. Knepley   PetscFunctionBegin;
1886*e600fa54SMatthew G. Knepley   mesh->distDefault = dist;
1887*e600fa54SMatthew G. Knepley   PetscFunctionReturn(0);
1888*e600fa54SMatthew G. Knepley }
1889*e600fa54SMatthew G. Knepley 
1890*e600fa54SMatthew G. Knepley /*@
1891*e600fa54SMatthew G. Knepley   DMPlexDistributeSetDefault - Set flag indicating whether the DM should be distributed by default
1892*e600fa54SMatthew G. Knepley 
1893*e600fa54SMatthew G. Knepley   Logically collective
1894*e600fa54SMatthew G. Knepley 
1895*e600fa54SMatthew G. Knepley   Input Parameters:
1896*e600fa54SMatthew G. Knepley + dm   - The DM
1897*e600fa54SMatthew G. Knepley - dist - Flag for distribution
1898*e600fa54SMatthew G. Knepley 
1899*e600fa54SMatthew G. Knepley   Level: intermediate
1900*e600fa54SMatthew G. Knepley 
1901*e600fa54SMatthew G. Knepley .seealso: DMDistributeGetDefault(), DMPlexDistribute()
1902*e600fa54SMatthew G. Knepley @*/
1903*e600fa54SMatthew G. Knepley PetscErrorCode DMPlexDistributeSetDefault(DM dm, PetscBool dist)
1904*e600fa54SMatthew G. Knepley {
1905*e600fa54SMatthew G. Knepley   PetscErrorCode ierr;
1906*e600fa54SMatthew G. Knepley 
1907*e600fa54SMatthew G. Knepley   PetscFunctionBegin;
1908*e600fa54SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
1909*e600fa54SMatthew G. Knepley   PetscValidLogicalCollectiveBool(dm, dist, 2);
1910*e600fa54SMatthew G. Knepley   ierr = PetscTryMethod(dm,"DMPlexDistributeSetDefault_C",(DM,PetscBool),(dm,dist));CHKERRQ(ierr);
1911*e600fa54SMatthew G. Knepley   PetscFunctionReturn(0);
1912*e600fa54SMatthew G. Knepley }
1913*e600fa54SMatthew G. Knepley 
1914*e600fa54SMatthew G. Knepley PetscErrorCode DMPlexDistributeGetDefault_Plex(DM dm, PetscBool *dist)
1915*e600fa54SMatthew G. Knepley {
1916*e600fa54SMatthew G. Knepley   DM_Plex *mesh = (DM_Plex *) dm->data;
1917*e600fa54SMatthew G. Knepley 
1918*e600fa54SMatthew G. Knepley   PetscFunctionBegin;
1919*e600fa54SMatthew G. Knepley   *dist = mesh->distDefault;
1920*e600fa54SMatthew G. Knepley   PetscFunctionReturn(0);
1921*e600fa54SMatthew G. Knepley }
1922*e600fa54SMatthew G. Knepley 
1923*e600fa54SMatthew G. Knepley /*@
1924*e600fa54SMatthew G. Knepley   DMPlexDistributeGetDefault - Get flag indicating whether the DM should be distributed by default
1925*e600fa54SMatthew G. Knepley 
1926*e600fa54SMatthew G. Knepley   Not collective
1927*e600fa54SMatthew G. Knepley 
1928*e600fa54SMatthew G. Knepley   Input Parameter:
1929*e600fa54SMatthew G. Knepley . dm   - The DM
1930*e600fa54SMatthew G. Knepley 
1931*e600fa54SMatthew G. Knepley   Output Parameter:
1932*e600fa54SMatthew G. Knepley . dist - Flag for distribution
1933*e600fa54SMatthew G. Knepley 
1934*e600fa54SMatthew G. Knepley   Level: intermediate
1935*e600fa54SMatthew G. Knepley 
1936*e600fa54SMatthew G. Knepley .seealso: DMDistributeSetDefault(), DMPlexDistribute()
1937*e600fa54SMatthew G. Knepley @*/
1938*e600fa54SMatthew G. Knepley PetscErrorCode DMPlexDistributeGetDefault(DM dm, PetscBool *dist)
1939*e600fa54SMatthew G. Knepley {
1940*e600fa54SMatthew G. Knepley   PetscErrorCode ierr;
1941*e600fa54SMatthew G. Knepley 
1942*e600fa54SMatthew G. Knepley   PetscFunctionBegin;
1943*e600fa54SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
1944*e600fa54SMatthew G. Knepley   PetscValidBoolPointer(dist, 2);
1945*e600fa54SMatthew G. Knepley   ierr = PetscUseMethod(dm,"DMPlexDistributeGetDefault_C",(DM,PetscBool*),(dm,dist));CHKERRQ(ierr);
1946*e600fa54SMatthew G. Knepley   PetscFunctionReturn(0);
1947*e600fa54SMatthew G. Knepley }
1948*e600fa54SMatthew G. Knepley 
19496462276dSToby Isaac /*@C
19506462276dSToby Isaac   DMPlexGetGatherDM - Get a copy of the DMPlex that gathers all points on the
19516462276dSToby Isaac   root process of the original's communicator.
19526462276dSToby Isaac 
1953d083f849SBarry Smith   Collective on dm
195483655b49SVáclav Hapla 
1955064ec1f3Sprj-   Input Parameter:
19566462276dSToby Isaac . dm - the original DMPlex object
19576462276dSToby Isaac 
19586462276dSToby Isaac   Output Parameters:
1959a13df41bSStefano Zampini + sf - the PetscSF used for point distribution (optional)
1960a13df41bSStefano Zampini - gatherMesh - the gathered DM object, or NULL
19616462276dSToby Isaac 
19626462276dSToby Isaac   Level: intermediate
19636462276dSToby Isaac 
19646462276dSToby Isaac .seealso: DMPlexDistribute(), DMPlexGetRedundantDM()
19656462276dSToby Isaac @*/
1966a13df41bSStefano Zampini PetscErrorCode DMPlexGetGatherDM(DM dm, PetscSF *sf, DM *gatherMesh)
19676462276dSToby Isaac {
19686462276dSToby Isaac   MPI_Comm       comm;
19696462276dSToby Isaac   PetscMPIInt    size;
19706462276dSToby Isaac   PetscPartitioner oldPart, gatherPart;
19716462276dSToby Isaac   PetscErrorCode ierr;
19726462276dSToby Isaac 
19736462276dSToby Isaac   PetscFunctionBegin;
19746462276dSToby Isaac   PetscValidHeaderSpecific(dm,DM_CLASSID,1);
1975064a246eSJacob Faibussowitsch   PetscValidPointer(gatherMesh,3);
19760c86c063SLisandro Dalcin   *gatherMesh = NULL;
1977a13df41bSStefano Zampini   if (sf) *sf = NULL;
19786462276dSToby Isaac   comm = PetscObjectComm((PetscObject)dm);
1979ffc4695bSBarry Smith   ierr = MPI_Comm_size(comm,&size);CHKERRMPI(ierr);
19806462276dSToby Isaac   if (size == 1) PetscFunctionReturn(0);
19816462276dSToby Isaac   ierr = DMPlexGetPartitioner(dm,&oldPart);CHKERRQ(ierr);
19826462276dSToby Isaac   ierr = PetscObjectReference((PetscObject)oldPart);CHKERRQ(ierr);
19836462276dSToby Isaac   ierr = PetscPartitionerCreate(comm,&gatherPart);CHKERRQ(ierr);
19846462276dSToby Isaac   ierr = PetscPartitionerSetType(gatherPart,PETSCPARTITIONERGATHER);CHKERRQ(ierr);
19856462276dSToby Isaac   ierr = DMPlexSetPartitioner(dm,gatherPart);CHKERRQ(ierr);
1986a13df41bSStefano Zampini   ierr = DMPlexDistribute(dm,0,sf,gatherMesh);CHKERRQ(ierr);
1987a13df41bSStefano Zampini 
19886462276dSToby Isaac   ierr = DMPlexSetPartitioner(dm,oldPart);CHKERRQ(ierr);
19896462276dSToby Isaac   ierr = PetscPartitionerDestroy(&gatherPart);CHKERRQ(ierr);
19906462276dSToby Isaac   ierr = PetscPartitionerDestroy(&oldPart);CHKERRQ(ierr);
19916462276dSToby Isaac   PetscFunctionReturn(0);
19926462276dSToby Isaac }
19936462276dSToby Isaac 
19946462276dSToby Isaac /*@C
19956462276dSToby Isaac   DMPlexGetRedundantDM - Get a copy of the DMPlex that is completely copied on each process.
19966462276dSToby Isaac 
1997d083f849SBarry Smith   Collective on dm
199883655b49SVáclav Hapla 
1999064ec1f3Sprj-   Input Parameter:
20006462276dSToby Isaac . dm - the original DMPlex object
20016462276dSToby Isaac 
20026462276dSToby Isaac   Output Parameters:
2003a13df41bSStefano Zampini + sf - the PetscSF used for point distribution (optional)
2004a13df41bSStefano Zampini - redundantMesh - the redundant DM object, or NULL
20056462276dSToby Isaac 
20066462276dSToby Isaac   Level: intermediate
20076462276dSToby Isaac 
20086462276dSToby Isaac .seealso: DMPlexDistribute(), DMPlexGetGatherDM()
20096462276dSToby Isaac @*/
2010a13df41bSStefano Zampini PetscErrorCode DMPlexGetRedundantDM(DM dm, PetscSF *sf, DM *redundantMesh)
20116462276dSToby Isaac {
20126462276dSToby Isaac   MPI_Comm       comm;
20136462276dSToby Isaac   PetscMPIInt    size, rank;
20146462276dSToby Isaac   PetscInt       pStart, pEnd, p;
20156462276dSToby Isaac   PetscInt       numPoints = -1;
2016a13df41bSStefano Zampini   PetscSF        migrationSF, sfPoint, gatherSF;
20176462276dSToby Isaac   DM             gatherDM, dmCoord;
20186462276dSToby Isaac   PetscSFNode    *points;
20196462276dSToby Isaac   PetscErrorCode ierr;
20206462276dSToby Isaac 
20216462276dSToby Isaac   PetscFunctionBegin;
20226462276dSToby Isaac   PetscValidHeaderSpecific(dm,DM_CLASSID,1);
2023064a246eSJacob Faibussowitsch   PetscValidPointer(redundantMesh,3);
20240c86c063SLisandro Dalcin   *redundantMesh = NULL;
20256462276dSToby Isaac   comm = PetscObjectComm((PetscObject)dm);
2026ffc4695bSBarry Smith   ierr = MPI_Comm_size(comm,&size);CHKERRMPI(ierr);
202768dbc166SMatthew G. Knepley   if (size == 1) {
202868dbc166SMatthew G. Knepley     ierr = PetscObjectReference((PetscObject) dm);CHKERRQ(ierr);
202968dbc166SMatthew G. Knepley     *redundantMesh = dm;
2030a13df41bSStefano Zampini     if (sf) *sf = NULL;
203168dbc166SMatthew G. Knepley     PetscFunctionReturn(0);
203268dbc166SMatthew G. Knepley   }
2033a13df41bSStefano Zampini   ierr = DMPlexGetGatherDM(dm,&gatherSF,&gatherDM);CHKERRQ(ierr);
20346462276dSToby Isaac   if (!gatherDM) PetscFunctionReturn(0);
2035ffc4695bSBarry Smith   ierr = MPI_Comm_rank(comm,&rank);CHKERRMPI(ierr);
20366462276dSToby Isaac   ierr = DMPlexGetChart(gatherDM,&pStart,&pEnd);CHKERRQ(ierr);
20376462276dSToby Isaac   numPoints = pEnd - pStart;
2038ffc4695bSBarry Smith   ierr = MPI_Bcast(&numPoints,1,MPIU_INT,0,comm);CHKERRMPI(ierr);
20396462276dSToby Isaac   ierr = PetscMalloc1(numPoints,&points);CHKERRQ(ierr);
20406462276dSToby Isaac   ierr = PetscSFCreate(comm,&migrationSF);CHKERRQ(ierr);
20416462276dSToby Isaac   for (p = 0; p < numPoints; p++) {
20426462276dSToby Isaac     points[p].index = p;
20436462276dSToby Isaac     points[p].rank  = 0;
20446462276dSToby Isaac   }
20456462276dSToby Isaac   ierr = PetscSFSetGraph(migrationSF,pEnd-pStart,numPoints,NULL,PETSC_OWN_POINTER,points,PETSC_OWN_POINTER);CHKERRQ(ierr);
20466462276dSToby Isaac   ierr = DMPlexCreate(comm, redundantMesh);CHKERRQ(ierr);
20476462276dSToby Isaac   ierr = PetscObjectSetName((PetscObject) *redundantMesh, "Redundant Mesh");CHKERRQ(ierr);
20486462276dSToby Isaac   ierr = DMPlexMigrate(gatherDM, migrationSF, *redundantMesh);CHKERRQ(ierr);
20496462276dSToby Isaac   ierr = DMPlexCreatePointSF(*redundantMesh, migrationSF, PETSC_FALSE, &sfPoint);CHKERRQ(ierr);
20506462276dSToby Isaac   ierr = DMSetPointSF(*redundantMesh, sfPoint);CHKERRQ(ierr);
20516462276dSToby Isaac   ierr = DMGetCoordinateDM(*redundantMesh, &dmCoord);CHKERRQ(ierr);
20526462276dSToby Isaac   if (dmCoord) {ierr = DMSetPointSF(dmCoord, sfPoint);CHKERRQ(ierr);}
20536462276dSToby Isaac   ierr = PetscSFDestroy(&sfPoint);CHKERRQ(ierr);
2054a13df41bSStefano Zampini   if (sf) {
2055a13df41bSStefano Zampini     PetscSF tsf;
2056a13df41bSStefano Zampini 
2057a13df41bSStefano Zampini     ierr = PetscSFCompose(gatherSF,migrationSF,&tsf);CHKERRQ(ierr);
2058a13df41bSStefano Zampini     ierr = DMPlexStratifyMigrationSF(dm, tsf, sf);CHKERRQ(ierr);
2059a13df41bSStefano Zampini     ierr = PetscSFDestroy(&tsf);CHKERRQ(ierr);
2060a13df41bSStefano Zampini   }
20616462276dSToby Isaac   ierr = PetscSFDestroy(&migrationSF);CHKERRQ(ierr);
2062a13df41bSStefano Zampini   ierr = PetscSFDestroy(&gatherSF);CHKERRQ(ierr);
20636462276dSToby Isaac   ierr = DMDestroy(&gatherDM);CHKERRQ(ierr);
2064*e600fa54SMatthew G. Knepley   ierr = DMCopyDisc(dm, *redundantMesh);CHKERRQ(ierr);
2065*e600fa54SMatthew G. Knepley   ierr = DMPlexCopy_Internal(dm, PETSC_TRUE, *redundantMesh);CHKERRQ(ierr);
20666462276dSToby Isaac   PetscFunctionReturn(0);
20676462276dSToby Isaac }
20685fa78c88SVaclav Hapla 
20695fa78c88SVaclav Hapla /*@
20705fa78c88SVaclav Hapla   DMPlexIsDistributed - Find out whether this DM is distributed, i.e. more than one rank owns some points.
20715fa78c88SVaclav Hapla 
20725fa78c88SVaclav Hapla   Collective
20735fa78c88SVaclav Hapla 
20745fa78c88SVaclav Hapla   Input Parameter:
20755fa78c88SVaclav Hapla . dm      - The DM object
20765fa78c88SVaclav Hapla 
20775fa78c88SVaclav Hapla   Output Parameter:
20785fa78c88SVaclav Hapla . distributed - Flag whether the DM is distributed
20795fa78c88SVaclav Hapla 
20805fa78c88SVaclav Hapla   Level: intermediate
20815fa78c88SVaclav Hapla 
20825fa78c88SVaclav Hapla   Notes:
20835fa78c88SVaclav Hapla   This currently finds out whether at least two ranks have any DAG points.
20845fa78c88SVaclav Hapla   This involves MPI_Allreduce() with one integer.
20855fa78c88SVaclav Hapla   The result is currently not stashed so every call to this routine involves this global communication.
20865fa78c88SVaclav Hapla 
20875fa78c88SVaclav Hapla .seealso: DMPlexDistribute(), DMPlexGetOverlap(), DMPlexIsInterpolated()
20885fa78c88SVaclav Hapla @*/
20895fa78c88SVaclav Hapla PetscErrorCode DMPlexIsDistributed(DM dm, PetscBool *distributed)
20905fa78c88SVaclav Hapla {
20915fa78c88SVaclav Hapla   PetscInt          pStart, pEnd, count;
20925fa78c88SVaclav Hapla   MPI_Comm          comm;
209335d70e31SStefano Zampini   PetscMPIInt       size;
20945fa78c88SVaclav Hapla   PetscErrorCode    ierr;
20955fa78c88SVaclav Hapla 
20965fa78c88SVaclav Hapla   PetscFunctionBegin;
20975fa78c88SVaclav Hapla   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
20985fa78c88SVaclav Hapla   PetscValidPointer(distributed,2);
20995fa78c88SVaclav Hapla   ierr = PetscObjectGetComm((PetscObject)dm,&comm);CHKERRQ(ierr);
210035d70e31SStefano Zampini   ierr = MPI_Comm_size(comm,&size);CHKERRMPI(ierr);
210135d70e31SStefano Zampini   if (size == 1) { *distributed = PETSC_FALSE; PetscFunctionReturn(0); }
21025fa78c88SVaclav Hapla   ierr = DMPlexGetChart(dm, &pStart, &pEnd);CHKERRQ(ierr);
210335d70e31SStefano Zampini   count = (pEnd - pStart) > 0 ? 1 : 0;
2104ffc4695bSBarry Smith   ierr = MPI_Allreduce(MPI_IN_PLACE, &count, 1, MPIU_INT, MPI_SUM, comm);CHKERRMPI(ierr);
21055fa78c88SVaclav Hapla   *distributed = count > 1 ? PETSC_TRUE : PETSC_FALSE;
21065fa78c88SVaclav Hapla   PetscFunctionReturn(0);
21075fa78c88SVaclav Hapla }
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