1af0996ceSBarry Smith #include <petsc/private/dmpleximpl.h> /*I "petscdmplex.h" I*/ 2c58f1c22SToby Isaac #include <petsc/private/dmlabelimpl.h> /*I "petscdmlabel.h" I*/ 370034214SMatthew G. Knepley 43c1f0c11SLawrence Mitchell /*@C 53c1f0c11SLawrence Mitchell DMPlexSetAdjacencyUser - Define adjacency in the mesh using a user-provided callback 63c1f0c11SLawrence Mitchell 73c1f0c11SLawrence Mitchell Input Parameters: 83c1f0c11SLawrence Mitchell + dm - The DM object 93c1f0c11SLawrence Mitchell . user - The user callback, may be NULL (to clear the callback) 103c1f0c11SLawrence Mitchell - ctx - context for callback evaluation, may be NULL 113c1f0c11SLawrence Mitchell 123c1f0c11SLawrence Mitchell Level: advanced 133c1f0c11SLawrence Mitchell 143c1f0c11SLawrence Mitchell Notes: 153c1f0c11SLawrence Mitchell The caller of DMPlexGetAdjacency may need to arrange that a large enough array is available for the adjacency. 163c1f0c11SLawrence Mitchell 173c1f0c11SLawrence Mitchell Any setting here overrides other configuration of DMPlex adjacency determination. 183c1f0c11SLawrence Mitchell 19b0441da4SMatthew G. Knepley .seealso: DMSetAdjacency(), DMPlexDistribute(), DMPlexPreallocateOperator(), DMPlexGetAdjacency(), DMPlexGetAdjacencyUser() 203c1f0c11SLawrence Mitchell @*/ 213c1f0c11SLawrence Mitchell PetscErrorCode DMPlexSetAdjacencyUser(DM dm,PetscErrorCode (*user)(DM,PetscInt,PetscInt*,PetscInt[],void*),void *ctx) 223c1f0c11SLawrence Mitchell { 233c1f0c11SLawrence Mitchell DM_Plex *mesh = (DM_Plex *)dm->data; 243c1f0c11SLawrence Mitchell 253c1f0c11SLawrence Mitchell PetscFunctionBegin; 263c1f0c11SLawrence Mitchell PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 273c1f0c11SLawrence Mitchell mesh->useradjacency = user; 283c1f0c11SLawrence Mitchell mesh->useradjacencyctx = ctx; 293c1f0c11SLawrence Mitchell PetscFunctionReturn(0); 303c1f0c11SLawrence Mitchell } 313c1f0c11SLawrence Mitchell 323c1f0c11SLawrence Mitchell /*@C 333c1f0c11SLawrence Mitchell DMPlexGetAdjacencyUser - get the user-defined adjacency callback 343c1f0c11SLawrence Mitchell 353c1f0c11SLawrence Mitchell Input Parameter: 363c1f0c11SLawrence Mitchell . dm - The DM object 373c1f0c11SLawrence Mitchell 383c1f0c11SLawrence Mitchell Output Parameters: 396b867d5aSJose E. Roman + user - The user callback 403c1f0c11SLawrence Mitchell - ctx - context for callback evaluation 413c1f0c11SLawrence Mitchell 423c1f0c11SLawrence Mitchell Level: advanced 433c1f0c11SLawrence Mitchell 44b0441da4SMatthew G. Knepley .seealso: DMSetAdjacency(), DMPlexDistribute(), DMPlexPreallocateOperator(), DMPlexGetAdjacency(), DMPlexSetAdjacencyUser() 453c1f0c11SLawrence Mitchell @*/ 463c1f0c11SLawrence Mitchell PetscErrorCode DMPlexGetAdjacencyUser(DM dm, PetscErrorCode (**user)(DM,PetscInt,PetscInt*,PetscInt[],void*), void **ctx) 473c1f0c11SLawrence Mitchell { 483c1f0c11SLawrence Mitchell DM_Plex *mesh = (DM_Plex *)dm->data; 493c1f0c11SLawrence Mitchell 503c1f0c11SLawrence Mitchell PetscFunctionBegin; 513c1f0c11SLawrence Mitchell PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 523c1f0c11SLawrence Mitchell if (user) *user = mesh->useradjacency; 533c1f0c11SLawrence Mitchell if (ctx) *ctx = mesh->useradjacencyctx; 543c1f0c11SLawrence Mitchell PetscFunctionReturn(0); 553c1f0c11SLawrence Mitchell } 563c1f0c11SLawrence Mitchell 5770034214SMatthew G. Knepley /*@ 58a17985deSToby Isaac DMPlexSetAdjacencyUseAnchors - Define adjacency in the mesh using the point-to-point constraints. 598b0b4c70SToby Isaac 608b0b4c70SToby Isaac Input Parameters: 618b0b4c70SToby Isaac + dm - The DM object 625b317d89SToby Isaac - useAnchors - Flag to use the constraints. If PETSC_TRUE, then constrained points are omitted from DMPlexGetAdjacency(), and their anchor points appear in their place. 638b0b4c70SToby Isaac 648b0b4c70SToby Isaac Level: intermediate 658b0b4c70SToby Isaac 66b0441da4SMatthew G. Knepley .seealso: DMGetAdjacency(), DMSetAdjacency(), DMPlexDistribute(), DMPlexPreallocateOperator(), DMPlexSetAnchors() 678b0b4c70SToby Isaac @*/ 685b317d89SToby Isaac PetscErrorCode DMPlexSetAdjacencyUseAnchors(DM dm, PetscBool useAnchors) 698b0b4c70SToby Isaac { 708b0b4c70SToby Isaac DM_Plex *mesh = (DM_Plex *) dm->data; 718b0b4c70SToby Isaac 728b0b4c70SToby Isaac PetscFunctionBegin; 738b0b4c70SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 745b317d89SToby Isaac mesh->useAnchors = useAnchors; 758b0b4c70SToby Isaac PetscFunctionReturn(0); 768b0b4c70SToby Isaac } 778b0b4c70SToby Isaac 788b0b4c70SToby Isaac /*@ 79a17985deSToby Isaac DMPlexGetAdjacencyUseAnchors - Query whether adjacency in the mesh uses the point-to-point constraints. 808b0b4c70SToby Isaac 818b0b4c70SToby Isaac Input Parameter: 828b0b4c70SToby Isaac . dm - The DM object 838b0b4c70SToby Isaac 848b0b4c70SToby Isaac Output Parameter: 855b317d89SToby Isaac . useAnchors - Flag to use the closure. If PETSC_TRUE, then constrained points are omitted from DMPlexGetAdjacency(), and their anchor points appear in their place. 868b0b4c70SToby Isaac 878b0b4c70SToby Isaac Level: intermediate 888b0b4c70SToby Isaac 89b0441da4SMatthew G. Knepley .seealso: DMPlexSetAdjacencyUseAnchors(), DMSetAdjacency(), DMGetAdjacency(), DMPlexDistribute(), DMPlexPreallocateOperator(), DMPlexSetAnchors() 908b0b4c70SToby Isaac @*/ 915b317d89SToby Isaac PetscErrorCode DMPlexGetAdjacencyUseAnchors(DM dm, PetscBool *useAnchors) 928b0b4c70SToby Isaac { 938b0b4c70SToby Isaac DM_Plex *mesh = (DM_Plex *) dm->data; 948b0b4c70SToby Isaac 958b0b4c70SToby Isaac PetscFunctionBegin; 968b0b4c70SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 97064a246eSJacob Faibussowitsch PetscValidBoolPointer(useAnchors, 2); 985b317d89SToby Isaac *useAnchors = mesh->useAnchors; 998b0b4c70SToby Isaac PetscFunctionReturn(0); 1008b0b4c70SToby Isaac } 1018b0b4c70SToby Isaac 10270034214SMatthew G. Knepley static PetscErrorCode DMPlexGetAdjacency_Cone_Internal(DM dm, PetscInt p, PetscInt *adjSize, PetscInt adj[]) 10370034214SMatthew G. Knepley { 10470034214SMatthew G. Knepley const PetscInt *cone = NULL; 10570034214SMatthew G. Knepley PetscInt numAdj = 0, maxAdjSize = *adjSize, coneSize, c; 10670034214SMatthew G. Knepley PetscErrorCode ierr; 10770034214SMatthew G. Knepley 10870034214SMatthew G. Knepley PetscFunctionBeginHot; 10970034214SMatthew G. Knepley ierr = DMPlexGetConeSize(dm, p, &coneSize);CHKERRQ(ierr); 11070034214SMatthew G. Knepley ierr = DMPlexGetCone(dm, p, &cone);CHKERRQ(ierr); 1114b6b44bdSMatthew G. Knepley for (c = 0; c <= coneSize; ++c) { 1124b6b44bdSMatthew G. Knepley const PetscInt point = !c ? p : cone[c-1]; 11370034214SMatthew G. Knepley const PetscInt *support = NULL; 11470034214SMatthew G. Knepley PetscInt supportSize, s, q; 11570034214SMatthew G. Knepley 1164b6b44bdSMatthew G. Knepley ierr = DMPlexGetSupportSize(dm, point, &supportSize);CHKERRQ(ierr); 1174b6b44bdSMatthew G. Knepley ierr = DMPlexGetSupport(dm, point, &support);CHKERRQ(ierr); 11870034214SMatthew G. Knepley for (s = 0; s < supportSize; ++s) { 119527e7439SSatish Balay for (q = 0; q < numAdj || ((void)(adj[numAdj++] = support[s]),0); ++q) { 12070034214SMatthew G. Knepley if (support[s] == adj[q]) break; 12170034214SMatthew G. Knepley } 1222c71b3e2SJacob Faibussowitsch PetscCheckFalse(numAdj > maxAdjSize,PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid mesh exceeded adjacency allocation (%D)", maxAdjSize); 12370034214SMatthew G. Knepley } 12470034214SMatthew G. Knepley } 12570034214SMatthew G. Knepley *adjSize = numAdj; 12670034214SMatthew G. Knepley PetscFunctionReturn(0); 12770034214SMatthew G. Knepley } 12870034214SMatthew G. Knepley 12970034214SMatthew G. Knepley static PetscErrorCode DMPlexGetAdjacency_Support_Internal(DM dm, PetscInt p, PetscInt *adjSize, PetscInt adj[]) 13070034214SMatthew G. Knepley { 13170034214SMatthew G. Knepley const PetscInt *support = NULL; 13270034214SMatthew G. Knepley PetscInt numAdj = 0, maxAdjSize = *adjSize, supportSize, s; 13370034214SMatthew G. Knepley PetscErrorCode ierr; 13470034214SMatthew G. Knepley 13570034214SMatthew G. Knepley PetscFunctionBeginHot; 13670034214SMatthew G. Knepley ierr = DMPlexGetSupportSize(dm, p, &supportSize);CHKERRQ(ierr); 13770034214SMatthew G. Knepley ierr = DMPlexGetSupport(dm, p, &support);CHKERRQ(ierr); 1384b6b44bdSMatthew G. Knepley for (s = 0; s <= supportSize; ++s) { 1394b6b44bdSMatthew G. Knepley const PetscInt point = !s ? p : support[s-1]; 14070034214SMatthew G. Knepley const PetscInt *cone = NULL; 14170034214SMatthew G. Knepley PetscInt coneSize, c, q; 14270034214SMatthew G. Knepley 1434b6b44bdSMatthew G. Knepley ierr = DMPlexGetConeSize(dm, point, &coneSize);CHKERRQ(ierr); 1444b6b44bdSMatthew G. Knepley ierr = DMPlexGetCone(dm, point, &cone);CHKERRQ(ierr); 14570034214SMatthew G. Knepley for (c = 0; c < coneSize; ++c) { 146527e7439SSatish Balay for (q = 0; q < numAdj || ((void)(adj[numAdj++] = cone[c]),0); ++q) { 14770034214SMatthew G. Knepley if (cone[c] == adj[q]) break; 14870034214SMatthew G. Knepley } 1492c71b3e2SJacob Faibussowitsch PetscCheckFalse(numAdj > maxAdjSize,PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid mesh exceeded adjacency allocation (%D)", maxAdjSize); 15070034214SMatthew G. Knepley } 15170034214SMatthew G. Knepley } 15270034214SMatthew G. Knepley *adjSize = numAdj; 15370034214SMatthew G. Knepley PetscFunctionReturn(0); 15470034214SMatthew G. Knepley } 15570034214SMatthew G. Knepley 15670034214SMatthew G. Knepley static PetscErrorCode DMPlexGetAdjacency_Transitive_Internal(DM dm, PetscInt p, PetscBool useClosure, PetscInt *adjSize, PetscInt adj[]) 15770034214SMatthew G. Knepley { 15870034214SMatthew G. Knepley PetscInt *star = NULL; 15970034214SMatthew G. Knepley PetscInt numAdj = 0, maxAdjSize = *adjSize, starSize, s; 16070034214SMatthew G. Knepley PetscErrorCode ierr; 16170034214SMatthew G. Knepley 16270034214SMatthew G. Knepley PetscFunctionBeginHot; 16370034214SMatthew G. Knepley ierr = DMPlexGetTransitiveClosure(dm, p, useClosure, &starSize, &star);CHKERRQ(ierr); 16470034214SMatthew G. Knepley for (s = 0; s < starSize*2; s += 2) { 16570034214SMatthew G. Knepley const PetscInt *closure = NULL; 16670034214SMatthew G. Knepley PetscInt closureSize, c, q; 16770034214SMatthew G. Knepley 16870034214SMatthew G. Knepley ierr = DMPlexGetTransitiveClosure(dm, star[s], (PetscBool)!useClosure, &closureSize, (PetscInt**) &closure);CHKERRQ(ierr); 16970034214SMatthew G. Knepley for (c = 0; c < closureSize*2; c += 2) { 170527e7439SSatish Balay for (q = 0; q < numAdj || ((void)(adj[numAdj++] = closure[c]),0); ++q) { 17170034214SMatthew G. Knepley if (closure[c] == adj[q]) break; 17270034214SMatthew G. Knepley } 1732c71b3e2SJacob Faibussowitsch PetscCheckFalse(numAdj > maxAdjSize,PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid mesh exceeded adjacency allocation (%D)", maxAdjSize); 17470034214SMatthew G. Knepley } 17570034214SMatthew G. Knepley ierr = DMPlexRestoreTransitiveClosure(dm, star[s], (PetscBool)!useClosure, &closureSize, (PetscInt**) &closure);CHKERRQ(ierr); 17670034214SMatthew G. Knepley } 17770034214SMatthew G. Knepley ierr = DMPlexRestoreTransitiveClosure(dm, p, useClosure, &starSize, &star);CHKERRQ(ierr); 17870034214SMatthew G. Knepley *adjSize = numAdj; 17970034214SMatthew G. Knepley PetscFunctionReturn(0); 18070034214SMatthew G. Knepley } 18170034214SMatthew G. Knepley 1825b317d89SToby Isaac PetscErrorCode DMPlexGetAdjacency_Internal(DM dm, PetscInt p, PetscBool useCone, PetscBool useTransitiveClosure, PetscBool useAnchors, PetscInt *adjSize, PetscInt *adj[]) 18370034214SMatthew G. Knepley { 18479bad331SMatthew G. Knepley static PetscInt asiz = 0; 1858b0b4c70SToby Isaac PetscInt maxAnchors = 1; 1868b0b4c70SToby Isaac PetscInt aStart = -1, aEnd = -1; 1878b0b4c70SToby Isaac PetscInt maxAdjSize; 1888b0b4c70SToby Isaac PetscSection aSec = NULL; 1898b0b4c70SToby Isaac IS aIS = NULL; 1908b0b4c70SToby Isaac const PetscInt *anchors; 1913c1f0c11SLawrence Mitchell DM_Plex *mesh = (DM_Plex *)dm->data; 19270034214SMatthew G. Knepley PetscErrorCode ierr; 19370034214SMatthew G. Knepley 19470034214SMatthew G. Knepley PetscFunctionBeginHot; 1955b317d89SToby Isaac if (useAnchors) { 196a17985deSToby Isaac ierr = DMPlexGetAnchors(dm,&aSec,&aIS);CHKERRQ(ierr); 1978b0b4c70SToby Isaac if (aSec) { 1988b0b4c70SToby Isaac ierr = PetscSectionGetMaxDof(aSec,&maxAnchors);CHKERRQ(ierr); 19924c766afSToby Isaac maxAnchors = PetscMax(1,maxAnchors); 2008b0b4c70SToby Isaac ierr = PetscSectionGetChart(aSec,&aStart,&aEnd);CHKERRQ(ierr); 2018b0b4c70SToby Isaac ierr = ISGetIndices(aIS,&anchors);CHKERRQ(ierr); 2028b0b4c70SToby Isaac } 2038b0b4c70SToby Isaac } 20479bad331SMatthew G. Knepley if (!*adj) { 20524c766afSToby Isaac PetscInt depth, coneSeries, supportSeries, maxC, maxS, pStart, pEnd; 20679bad331SMatthew G. Knepley 20724c766afSToby Isaac ierr = DMPlexGetChart(dm, &pStart,&pEnd);CHKERRQ(ierr); 20879bad331SMatthew G. Knepley ierr = DMPlexGetDepth(dm, &depth);CHKERRQ(ierr); 209412e9a14SMatthew G. Knepley depth = PetscMax(depth, -depth); 21024c766afSToby Isaac ierr = DMPlexGetMaxSizes(dm, &maxC, &maxS);CHKERRQ(ierr); 21124c766afSToby Isaac coneSeries = (maxC > 1) ? ((PetscPowInt(maxC,depth+1)-1)/(maxC-1)) : depth+1; 21224c766afSToby Isaac supportSeries = (maxS > 1) ? ((PetscPowInt(maxS,depth+1)-1)/(maxS-1)) : depth+1; 21324c766afSToby Isaac asiz = PetscMax(PetscPowInt(maxS,depth)*coneSeries,PetscPowInt(maxC,depth)*supportSeries); 2148b0b4c70SToby Isaac asiz *= maxAnchors; 21524c766afSToby Isaac asiz = PetscMin(asiz,pEnd-pStart); 21679bad331SMatthew G. Knepley ierr = PetscMalloc1(asiz,adj);CHKERRQ(ierr); 21779bad331SMatthew G. Knepley } 21879bad331SMatthew G. Knepley if (*adjSize < 0) *adjSize = asiz; 2198b0b4c70SToby Isaac maxAdjSize = *adjSize; 2203c1f0c11SLawrence Mitchell if (mesh->useradjacency) { 22162f17a49SStefano Zampini ierr = (*mesh->useradjacency)(dm, p, adjSize, *adj, mesh->useradjacencyctx);CHKERRQ(ierr); 2223c1f0c11SLawrence Mitchell } else if (useTransitiveClosure) { 22379bad331SMatthew G. Knepley ierr = DMPlexGetAdjacency_Transitive_Internal(dm, p, useCone, adjSize, *adj);CHKERRQ(ierr); 22470034214SMatthew G. Knepley } else if (useCone) { 22579bad331SMatthew G. Knepley ierr = DMPlexGetAdjacency_Cone_Internal(dm, p, adjSize, *adj);CHKERRQ(ierr); 22670034214SMatthew G. Knepley } else { 22779bad331SMatthew G. Knepley ierr = DMPlexGetAdjacency_Support_Internal(dm, p, adjSize, *adj);CHKERRQ(ierr); 22870034214SMatthew G. Knepley } 2295b317d89SToby Isaac if (useAnchors && aSec) { 2308b0b4c70SToby Isaac PetscInt origSize = *adjSize; 2318b0b4c70SToby Isaac PetscInt numAdj = origSize; 2328b0b4c70SToby Isaac PetscInt i = 0, j; 2338b0b4c70SToby Isaac PetscInt *orig = *adj; 2348b0b4c70SToby Isaac 2358b0b4c70SToby Isaac while (i < origSize) { 2368b0b4c70SToby Isaac PetscInt p = orig[i]; 2378b0b4c70SToby Isaac PetscInt aDof = 0; 2388b0b4c70SToby Isaac 2398b0b4c70SToby Isaac if (p >= aStart && p < aEnd) { 2408b0b4c70SToby Isaac ierr = PetscSectionGetDof(aSec,p,&aDof);CHKERRQ(ierr); 2418b0b4c70SToby Isaac } 2428b0b4c70SToby Isaac if (aDof) { 2438b0b4c70SToby Isaac PetscInt aOff; 2448b0b4c70SToby Isaac PetscInt s, q; 2458b0b4c70SToby Isaac 2468b0b4c70SToby Isaac for (j = i + 1; j < numAdj; j++) { 2478b0b4c70SToby Isaac orig[j - 1] = orig[j]; 2488b0b4c70SToby Isaac } 2498b0b4c70SToby Isaac origSize--; 2508b0b4c70SToby Isaac numAdj--; 2518b0b4c70SToby Isaac ierr = PetscSectionGetOffset(aSec,p,&aOff);CHKERRQ(ierr); 2528b0b4c70SToby Isaac for (s = 0; s < aDof; ++s) { 253527e7439SSatish Balay for (q = 0; q < numAdj || ((void)(orig[numAdj++] = anchors[aOff+s]),0); ++q) { 2548b0b4c70SToby Isaac if (anchors[aOff+s] == orig[q]) break; 2558b0b4c70SToby Isaac } 2562c71b3e2SJacob Faibussowitsch PetscCheckFalse(numAdj > maxAdjSize,PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid mesh exceeded adjacency allocation (%D)", maxAdjSize); 2578b0b4c70SToby Isaac } 2588b0b4c70SToby Isaac } 2598b0b4c70SToby Isaac else { 2608b0b4c70SToby Isaac i++; 2618b0b4c70SToby Isaac } 2628b0b4c70SToby Isaac } 2638b0b4c70SToby Isaac *adjSize = numAdj; 2648b0b4c70SToby Isaac ierr = ISRestoreIndices(aIS,&anchors);CHKERRQ(ierr); 2658b0b4c70SToby Isaac } 26670034214SMatthew G. Knepley PetscFunctionReturn(0); 26770034214SMatthew G. Knepley } 26870034214SMatthew G. Knepley 26970034214SMatthew G. Knepley /*@ 27070034214SMatthew G. Knepley DMPlexGetAdjacency - Return all points adjacent to the given point 27170034214SMatthew G. Knepley 27270034214SMatthew G. Knepley Input Parameters: 27370034214SMatthew G. Knepley + dm - The DM object 2746b867d5aSJose E. Roman - p - The point 27570034214SMatthew G. Knepley 2766b867d5aSJose E. Roman Input/Output Parameters: 2776b867d5aSJose E. Roman + adjSize - The maximum size of adj if it is non-NULL, or PETSC_DETERMINE; 2786b867d5aSJose E. Roman on output the number of adjacent points 2796b867d5aSJose E. Roman - adj - Either NULL so that the array is allocated, or an existing array with size adjSize; 2806b867d5aSJose E. Roman on output contains the adjacent points 28170034214SMatthew G. Knepley 28270034214SMatthew G. Knepley Level: advanced 28370034214SMatthew G. Knepley 28495452b02SPatrick Sanan Notes: 28595452b02SPatrick Sanan The user must PetscFree the adj array if it was not passed in. 28670034214SMatthew G. Knepley 287b0441da4SMatthew G. Knepley .seealso: DMSetAdjacency(), DMPlexDistribute(), DMCreateMatrix(), DMPlexPreallocateOperator() 28870034214SMatthew G. Knepley @*/ 28970034214SMatthew G. Knepley PetscErrorCode DMPlexGetAdjacency(DM dm, PetscInt p, PetscInt *adjSize, PetscInt *adj[]) 29070034214SMatthew G. Knepley { 2911cf84007SMatthew G. Knepley PetscBool useCone, useClosure, useAnchors; 29270034214SMatthew G. Knepley PetscErrorCode ierr; 29370034214SMatthew G. Knepley 29470034214SMatthew G. Knepley PetscFunctionBeginHot; 29570034214SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 29670034214SMatthew G. Knepley PetscValidPointer(adjSize,3); 29770034214SMatthew G. Knepley PetscValidPointer(adj,4); 298b0441da4SMatthew G. Knepley ierr = DMGetBasicAdjacency(dm, &useCone, &useClosure);CHKERRQ(ierr); 2991cf84007SMatthew G. Knepley ierr = DMPlexGetAdjacencyUseAnchors(dm, &useAnchors);CHKERRQ(ierr); 3001cf84007SMatthew G. Knepley ierr = DMPlexGetAdjacency_Internal(dm, p, useCone, useClosure, useAnchors, adjSize, adj);CHKERRQ(ierr); 30170034214SMatthew G. Knepley PetscFunctionReturn(0); 30270034214SMatthew G. Knepley } 30308633170SToby Isaac 304b0a623aaSMatthew G. Knepley /*@ 305b0a623aaSMatthew G. Knepley DMPlexCreateTwoSidedProcessSF - Create an SF which just has process connectivity 306b0a623aaSMatthew G. Knepley 307d083f849SBarry Smith Collective on dm 308b0a623aaSMatthew G. Knepley 309b0a623aaSMatthew G. Knepley Input Parameters: 310b0a623aaSMatthew G. Knepley + dm - The DM 3116b867d5aSJose E. Roman . sfPoint - The PetscSF which encodes point connectivity 3126b867d5aSJose E. Roman . rootRankSection - 3136b867d5aSJose E. Roman . rootRanks - 3146b867d5aSJose E. Roman . leftRankSection - 3156b867d5aSJose E. Roman - leafRanks - 316b0a623aaSMatthew G. Knepley 317b0a623aaSMatthew G. Knepley Output Parameters: 318b0a623aaSMatthew G. Knepley + processRanks - A list of process neighbors, or NULL 319b0a623aaSMatthew G. Knepley - sfProcess - An SF encoding the two-sided process connectivity, or NULL 320b0a623aaSMatthew G. Knepley 321b0a623aaSMatthew G. Knepley Level: developer 322b0a623aaSMatthew G. Knepley 323b0a623aaSMatthew G. Knepley .seealso: PetscSFCreate(), DMPlexCreateProcessSF() 324b0a623aaSMatthew G. Knepley @*/ 325b0a623aaSMatthew G. Knepley PetscErrorCode DMPlexCreateTwoSidedProcessSF(DM dm, PetscSF sfPoint, PetscSection rootRankSection, IS rootRanks, PetscSection leafRankSection, IS leafRanks, IS *processRanks, PetscSF *sfProcess) 326b0a623aaSMatthew G. Knepley { 327b0a623aaSMatthew G. Knepley const PetscSFNode *remotePoints; 328b0a623aaSMatthew G. Knepley PetscInt *localPointsNew; 329b0a623aaSMatthew G. Knepley PetscSFNode *remotePointsNew; 330b0a623aaSMatthew G. Knepley const PetscInt *nranks; 331b0a623aaSMatthew G. Knepley PetscInt *ranksNew; 332b0a623aaSMatthew G. Knepley PetscBT neighbors; 333b0a623aaSMatthew G. Knepley PetscInt pStart, pEnd, p, numLeaves, l, numNeighbors, n; 3349852e123SBarry Smith PetscMPIInt size, proc, rank; 335b0a623aaSMatthew G. Knepley PetscErrorCode ierr; 336b0a623aaSMatthew G. Knepley 337b0a623aaSMatthew G. Knepley PetscFunctionBegin; 338b0a623aaSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 339b0a623aaSMatthew G. Knepley PetscValidHeaderSpecific(sfPoint, PETSCSF_CLASSID, 2); 340064a246eSJacob Faibussowitsch if (processRanks) {PetscValidPointer(processRanks, 7);} 341064a246eSJacob Faibussowitsch if (sfProcess) {PetscValidPointer(sfProcess, 8);} 342ffc4695bSBarry Smith ierr = MPI_Comm_size(PetscObjectComm((PetscObject) dm), &size);CHKERRMPI(ierr); 343ffc4695bSBarry Smith ierr = MPI_Comm_rank(PetscObjectComm((PetscObject) dm), &rank);CHKERRMPI(ierr); 344b0a623aaSMatthew G. Knepley ierr = PetscSFGetGraph(sfPoint, NULL, &numLeaves, NULL, &remotePoints);CHKERRQ(ierr); 3459852e123SBarry Smith ierr = PetscBTCreate(size, &neighbors);CHKERRQ(ierr); 3469852e123SBarry Smith ierr = PetscBTMemzero(size, neighbors);CHKERRQ(ierr); 347b0a623aaSMatthew G. Knepley /* Compute root-to-leaf process connectivity */ 348b0a623aaSMatthew G. Knepley ierr = PetscSectionGetChart(rootRankSection, &pStart, &pEnd);CHKERRQ(ierr); 349b0a623aaSMatthew G. Knepley ierr = ISGetIndices(rootRanks, &nranks);CHKERRQ(ierr); 350b0a623aaSMatthew G. Knepley for (p = pStart; p < pEnd; ++p) { 351b0a623aaSMatthew G. Knepley PetscInt ndof, noff, n; 352b0a623aaSMatthew G. Knepley 353b0a623aaSMatthew G. Knepley ierr = PetscSectionGetDof(rootRankSection, p, &ndof);CHKERRQ(ierr); 354b0a623aaSMatthew G. Knepley ierr = PetscSectionGetOffset(rootRankSection, p, &noff);CHKERRQ(ierr); 355302440fdSBarry Smith for (n = 0; n < ndof; ++n) {ierr = PetscBTSet(neighbors, nranks[noff+n]);CHKERRQ(ierr);} 356b0a623aaSMatthew G. Knepley } 357b0a623aaSMatthew G. Knepley ierr = ISRestoreIndices(rootRanks, &nranks);CHKERRQ(ierr); 358b0a623aaSMatthew G. Knepley /* Compute leaf-to-neighbor process connectivity */ 359b0a623aaSMatthew G. Knepley ierr = PetscSectionGetChart(leafRankSection, &pStart, &pEnd);CHKERRQ(ierr); 360b0a623aaSMatthew G. Knepley ierr = ISGetIndices(leafRanks, &nranks);CHKERRQ(ierr); 361b0a623aaSMatthew G. Knepley for (p = pStart; p < pEnd; ++p) { 362b0a623aaSMatthew G. Knepley PetscInt ndof, noff, n; 363b0a623aaSMatthew G. Knepley 364b0a623aaSMatthew G. Knepley ierr = PetscSectionGetDof(leafRankSection, p, &ndof);CHKERRQ(ierr); 365b0a623aaSMatthew G. Knepley ierr = PetscSectionGetOffset(leafRankSection, p, &noff);CHKERRQ(ierr); 366302440fdSBarry Smith for (n = 0; n < ndof; ++n) {ierr = PetscBTSet(neighbors, nranks[noff+n]);CHKERRQ(ierr);} 367b0a623aaSMatthew G. Knepley } 368b0a623aaSMatthew G. Knepley ierr = ISRestoreIndices(leafRanks, &nranks);CHKERRQ(ierr); 369b0a623aaSMatthew G. Knepley /* Compute leaf-to-root process connectivity */ 370b0a623aaSMatthew G. Knepley for (l = 0; l < numLeaves; ++l) {PetscBTSet(neighbors, remotePoints[l].rank);} 371b0a623aaSMatthew G. Knepley /* Calculate edges */ 372b0a623aaSMatthew G. Knepley PetscBTClear(neighbors, rank); 3739852e123SBarry Smith for (proc = 0, numNeighbors = 0; proc < size; ++proc) {if (PetscBTLookup(neighbors, proc)) ++numNeighbors;} 374b0a623aaSMatthew G. Knepley ierr = PetscMalloc1(numNeighbors, &ranksNew);CHKERRQ(ierr); 375b0a623aaSMatthew G. Knepley ierr = PetscMalloc1(numNeighbors, &localPointsNew);CHKERRQ(ierr); 376b0a623aaSMatthew G. Knepley ierr = PetscMalloc1(numNeighbors, &remotePointsNew);CHKERRQ(ierr); 3779852e123SBarry Smith for (proc = 0, n = 0; proc < size; ++proc) { 378b0a623aaSMatthew G. Knepley if (PetscBTLookup(neighbors, proc)) { 379b0a623aaSMatthew G. Knepley ranksNew[n] = proc; 380b0a623aaSMatthew G. Knepley localPointsNew[n] = proc; 381b0a623aaSMatthew G. Knepley remotePointsNew[n].index = rank; 382b0a623aaSMatthew G. Knepley remotePointsNew[n].rank = proc; 383b0a623aaSMatthew G. Knepley ++n; 384b0a623aaSMatthew G. Knepley } 385b0a623aaSMatthew G. Knepley } 386b0a623aaSMatthew G. Knepley ierr = PetscBTDestroy(&neighbors);CHKERRQ(ierr); 387b0a623aaSMatthew G. Knepley if (processRanks) {ierr = ISCreateGeneral(PetscObjectComm((PetscObject)dm), numNeighbors, ranksNew, PETSC_OWN_POINTER, processRanks);CHKERRQ(ierr);} 388b0a623aaSMatthew G. Knepley else {ierr = PetscFree(ranksNew);CHKERRQ(ierr);} 389b0a623aaSMatthew G. Knepley if (sfProcess) { 390b0a623aaSMatthew G. Knepley ierr = PetscSFCreate(PetscObjectComm((PetscObject)dm), sfProcess);CHKERRQ(ierr); 391b0a623aaSMatthew G. Knepley ierr = PetscObjectSetName((PetscObject) *sfProcess, "Two-Sided Process SF");CHKERRQ(ierr); 392b0a623aaSMatthew G. Knepley ierr = PetscSFSetFromOptions(*sfProcess);CHKERRQ(ierr); 3939852e123SBarry Smith ierr = PetscSFSetGraph(*sfProcess, size, numNeighbors, localPointsNew, PETSC_OWN_POINTER, remotePointsNew, PETSC_OWN_POINTER);CHKERRQ(ierr); 394b0a623aaSMatthew G. Knepley } 395b0a623aaSMatthew G. Knepley PetscFunctionReturn(0); 396b0a623aaSMatthew G. Knepley } 397b0a623aaSMatthew G. Knepley 398b0a623aaSMatthew G. Knepley /*@ 399b0a623aaSMatthew G. Knepley DMPlexDistributeOwnership - Compute owner information for shared points. This basically gets two-sided for an SF. 400b0a623aaSMatthew G. Knepley 401d083f849SBarry Smith Collective on dm 402b0a623aaSMatthew G. Knepley 403b0a623aaSMatthew G. Knepley Input Parameter: 404b0a623aaSMatthew G. Knepley . dm - The DM 405b0a623aaSMatthew G. Knepley 406b0a623aaSMatthew G. Knepley Output Parameters: 407b0a623aaSMatthew G. Knepley + rootSection - The number of leaves for a given root point 408b0a623aaSMatthew G. Knepley . rootrank - The rank of each edge into the root point 409b0a623aaSMatthew G. Knepley . leafSection - The number of processes sharing a given leaf point 410b0a623aaSMatthew G. Knepley - leafrank - The rank of each process sharing a leaf point 411b0a623aaSMatthew G. Knepley 412b0a623aaSMatthew G. Knepley Level: developer 413b0a623aaSMatthew G. Knepley 414dccdeccaSVaclav Hapla .seealso: DMPlexCreateOverlapLabel(), DMPlexDistribute(), DMPlexDistributeOverlap() 415b0a623aaSMatthew G. Knepley @*/ 416b0a623aaSMatthew G. Knepley PetscErrorCode DMPlexDistributeOwnership(DM dm, PetscSection rootSection, IS *rootrank, PetscSection leafSection, IS *leafrank) 417b0a623aaSMatthew G. Knepley { 418b0a623aaSMatthew G. Knepley MPI_Comm comm; 419b0a623aaSMatthew G. Knepley PetscSF sfPoint; 420b0a623aaSMatthew G. Knepley const PetscInt *rootdegree; 421b0a623aaSMatthew G. Knepley PetscInt *myrank, *remoterank; 422b0a623aaSMatthew G. Knepley PetscInt pStart, pEnd, p, nedges; 423b0a623aaSMatthew G. Knepley PetscMPIInt rank; 424b0a623aaSMatthew G. Knepley PetscErrorCode ierr; 425b0a623aaSMatthew G. Knepley 426b0a623aaSMatthew G. Knepley PetscFunctionBegin; 427b0a623aaSMatthew G. Knepley ierr = PetscObjectGetComm((PetscObject) dm, &comm);CHKERRQ(ierr); 428ffc4695bSBarry Smith ierr = MPI_Comm_rank(comm, &rank);CHKERRMPI(ierr); 429b0a623aaSMatthew G. Knepley ierr = DMPlexGetChart(dm, &pStart, &pEnd);CHKERRQ(ierr); 430b0a623aaSMatthew G. Knepley ierr = DMGetPointSF(dm, &sfPoint);CHKERRQ(ierr); 431b0a623aaSMatthew G. Knepley /* Compute number of leaves for each root */ 432b0a623aaSMatthew G. Knepley ierr = PetscObjectSetName((PetscObject) rootSection, "Root Section");CHKERRQ(ierr); 433b0a623aaSMatthew G. Knepley ierr = PetscSectionSetChart(rootSection, pStart, pEnd);CHKERRQ(ierr); 434b0a623aaSMatthew G. Knepley ierr = PetscSFComputeDegreeBegin(sfPoint, &rootdegree);CHKERRQ(ierr); 435b0a623aaSMatthew G. Knepley ierr = PetscSFComputeDegreeEnd(sfPoint, &rootdegree);CHKERRQ(ierr); 436b0a623aaSMatthew G. Knepley for (p = pStart; p < pEnd; ++p) {ierr = PetscSectionSetDof(rootSection, p, rootdegree[p-pStart]);CHKERRQ(ierr);} 437b0a623aaSMatthew G. Knepley ierr = PetscSectionSetUp(rootSection);CHKERRQ(ierr); 438b0a623aaSMatthew G. Knepley /* Gather rank of each leaf to root */ 439b0a623aaSMatthew G. Knepley ierr = PetscSectionGetStorageSize(rootSection, &nedges);CHKERRQ(ierr); 440b0a623aaSMatthew G. Knepley ierr = PetscMalloc1(pEnd-pStart, &myrank);CHKERRQ(ierr); 441b0a623aaSMatthew G. Knepley ierr = PetscMalloc1(nedges, &remoterank);CHKERRQ(ierr); 442b0a623aaSMatthew G. Knepley for (p = 0; p < pEnd-pStart; ++p) myrank[p] = rank; 443b0a623aaSMatthew G. Knepley ierr = PetscSFGatherBegin(sfPoint, MPIU_INT, myrank, remoterank);CHKERRQ(ierr); 444b0a623aaSMatthew G. Knepley ierr = PetscSFGatherEnd(sfPoint, MPIU_INT, myrank, remoterank);CHKERRQ(ierr); 445b0a623aaSMatthew G. Knepley ierr = PetscFree(myrank);CHKERRQ(ierr); 446b0a623aaSMatthew G. Knepley ierr = ISCreateGeneral(comm, nedges, remoterank, PETSC_OWN_POINTER, rootrank);CHKERRQ(ierr); 447b0a623aaSMatthew G. Knepley /* Distribute remote ranks to leaves */ 448b0a623aaSMatthew G. Knepley ierr = PetscObjectSetName((PetscObject) leafSection, "Leaf Section");CHKERRQ(ierr); 449b0a623aaSMatthew G. Knepley ierr = DMPlexDistributeFieldIS(dm, sfPoint, rootSection, *rootrank, leafSection, leafrank);CHKERRQ(ierr); 450b0a623aaSMatthew G. Knepley PetscFunctionReturn(0); 451b0a623aaSMatthew G. Knepley } 452b0a623aaSMatthew G. Knepley 453278397a0SMatthew G. Knepley /*@C 454dccdeccaSVaclav Hapla DMPlexCreateOverlapLabel - Compute owner information for shared points. This basically gets two-sided for an SF. 455b0a623aaSMatthew G. Knepley 456d083f849SBarry Smith Collective on dm 457b0a623aaSMatthew G. Knepley 458b0a623aaSMatthew G. Knepley Input Parameters: 459b0a623aaSMatthew G. Knepley + dm - The DM 46024d039d7SMichael Lange . levels - Number of overlap levels 461b0a623aaSMatthew G. Knepley . rootSection - The number of leaves for a given root point 462b0a623aaSMatthew G. Knepley . rootrank - The rank of each edge into the root point 463b0a623aaSMatthew G. Knepley . leafSection - The number of processes sharing a given leaf point 464b0a623aaSMatthew G. Knepley - leafrank - The rank of each process sharing a leaf point 465b0a623aaSMatthew G. Knepley 466064ec1f3Sprj- Output Parameter: 467b4ec6ac8SBarry Smith . ovLabel - DMLabel containing remote overlap contributions as point/rank pairings 468b0a623aaSMatthew G. Knepley 469b0a623aaSMatthew G. Knepley Level: developer 470b0a623aaSMatthew G. Knepley 4711fd9873aSMichael Lange .seealso: DMPlexDistributeOwnership(), DMPlexDistribute() 472b0a623aaSMatthew G. Knepley @*/ 473dccdeccaSVaclav Hapla PetscErrorCode DMPlexCreateOverlapLabel(DM dm, PetscInt levels, PetscSection rootSection, IS rootrank, PetscSection leafSection, IS leafrank, DMLabel *ovLabel) 474b0a623aaSMatthew G. Knepley { 475e540f424SMichael Lange MPI_Comm comm; 476b0a623aaSMatthew G. Knepley DMLabel ovAdjByRank; /* A DMLabel containing all points adjacent to shared points, separated by rank (value in label) */ 477874ddda9SLisandro Dalcin PetscSF sfPoint; 478b0a623aaSMatthew G. Knepley const PetscSFNode *remote; 479b0a623aaSMatthew G. Knepley const PetscInt *local; 4801fd9873aSMichael Lange const PetscInt *nrank, *rrank; 481b0a623aaSMatthew G. Knepley PetscInt *adj = NULL; 4821fd9873aSMichael Lange PetscInt pStart, pEnd, p, sStart, sEnd, nleaves, l; 4839852e123SBarry Smith PetscMPIInt rank, size; 48431bc6364SLisandro Dalcin PetscBool flg; 485b0a623aaSMatthew G. Knepley PetscErrorCode ierr; 486b0a623aaSMatthew G. Knepley 487b0a623aaSMatthew G. Knepley PetscFunctionBegin; 4886ba1a4c7SVaclav Hapla *ovLabel = NULL; 489e540f424SMichael Lange ierr = PetscObjectGetComm((PetscObject) dm, &comm);CHKERRQ(ierr); 490ffc4695bSBarry Smith ierr = MPI_Comm_size(comm, &size);CHKERRMPI(ierr); 491ffc4695bSBarry Smith ierr = MPI_Comm_rank(comm, &rank);CHKERRMPI(ierr); 4926ba1a4c7SVaclav Hapla if (size == 1) PetscFunctionReturn(0); 493b0a623aaSMatthew G. Knepley ierr = DMGetPointSF(dm, &sfPoint);CHKERRQ(ierr); 494b0a623aaSMatthew G. Knepley ierr = DMPlexGetChart(dm, &pStart, &pEnd);CHKERRQ(ierr); 495d1674c6dSMatthew Knepley if (!levels) { 496d1674c6dSMatthew Knepley /* Add owned points */ 497d1674c6dSMatthew Knepley ierr = DMLabelCreate(PETSC_COMM_SELF, "Overlap label", ovLabel);CHKERRQ(ierr); 498d1674c6dSMatthew Knepley for (p = pStart; p < pEnd; ++p) {ierr = DMLabelSetValue(*ovLabel, p, rank);CHKERRQ(ierr);} 499d1674c6dSMatthew Knepley PetscFunctionReturn(0); 500d1674c6dSMatthew Knepley } 501b0a623aaSMatthew G. Knepley ierr = PetscSectionGetChart(leafSection, &sStart, &sEnd);CHKERRQ(ierr); 502b0a623aaSMatthew G. Knepley ierr = PetscSFGetGraph(sfPoint, NULL, &nleaves, &local, &remote);CHKERRQ(ierr); 503d67d17b1SMatthew G. Knepley ierr = DMLabelCreate(PETSC_COMM_SELF, "Overlap adjacency", &ovAdjByRank);CHKERRQ(ierr); 504b0a623aaSMatthew G. Knepley /* Handle leaves: shared with the root point */ 505b0a623aaSMatthew G. Knepley for (l = 0; l < nleaves; ++l) { 506b0a623aaSMatthew G. Knepley PetscInt adjSize = PETSC_DETERMINE, a; 507b0a623aaSMatthew G. Knepley 508df20756eSMatthew G. Knepley ierr = DMPlexGetAdjacency(dm, local ? local[l] : l, &adjSize, &adj);CHKERRQ(ierr); 509b0a623aaSMatthew G. Knepley for (a = 0; a < adjSize; ++a) {ierr = DMLabelSetValue(ovAdjByRank, adj[a], remote[l].rank);CHKERRQ(ierr);} 510b0a623aaSMatthew G. Knepley } 511b0a623aaSMatthew G. Knepley ierr = ISGetIndices(rootrank, &rrank);CHKERRQ(ierr); 512b0a623aaSMatthew G. Knepley ierr = ISGetIndices(leafrank, &nrank);CHKERRQ(ierr); 513b0a623aaSMatthew G. Knepley /* Handle roots */ 514b0a623aaSMatthew G. Knepley for (p = pStart; p < pEnd; ++p) { 515b0a623aaSMatthew G. Knepley PetscInt adjSize = PETSC_DETERMINE, neighbors = 0, noff, n, a; 516b0a623aaSMatthew G. Knepley 517b0a623aaSMatthew G. Knepley if ((p >= sStart) && (p < sEnd)) { 518b0a623aaSMatthew G. Knepley /* Some leaves share a root with other leaves on different processes */ 519b0a623aaSMatthew G. Knepley ierr = PetscSectionGetDof(leafSection, p, &neighbors);CHKERRQ(ierr); 520b0a623aaSMatthew G. Knepley if (neighbors) { 521b0a623aaSMatthew G. Knepley ierr = PetscSectionGetOffset(leafSection, p, &noff);CHKERRQ(ierr); 522b0a623aaSMatthew G. Knepley ierr = DMPlexGetAdjacency(dm, p, &adjSize, &adj);CHKERRQ(ierr); 523b0a623aaSMatthew G. Knepley for (n = 0; n < neighbors; ++n) { 524b0a623aaSMatthew G. Knepley const PetscInt remoteRank = nrank[noff+n]; 525b0a623aaSMatthew G. Knepley 526b0a623aaSMatthew G. Knepley if (remoteRank == rank) continue; 527b0a623aaSMatthew G. Knepley for (a = 0; a < adjSize; ++a) {ierr = DMLabelSetValue(ovAdjByRank, adj[a], remoteRank);CHKERRQ(ierr);} 528b0a623aaSMatthew G. Knepley } 529b0a623aaSMatthew G. Knepley } 530b0a623aaSMatthew G. Knepley } 531b0a623aaSMatthew G. Knepley /* Roots are shared with leaves */ 532b0a623aaSMatthew G. Knepley ierr = PetscSectionGetDof(rootSection, p, &neighbors);CHKERRQ(ierr); 533b0a623aaSMatthew G. Knepley if (!neighbors) continue; 534b0a623aaSMatthew G. Knepley ierr = PetscSectionGetOffset(rootSection, p, &noff);CHKERRQ(ierr); 535b0a623aaSMatthew G. Knepley ierr = DMPlexGetAdjacency(dm, p, &adjSize, &adj);CHKERRQ(ierr); 536b0a623aaSMatthew G. Knepley for (n = 0; n < neighbors; ++n) { 537b0a623aaSMatthew G. Knepley const PetscInt remoteRank = rrank[noff+n]; 538b0a623aaSMatthew G. Knepley 539b0a623aaSMatthew G. Knepley if (remoteRank == rank) continue; 540b0a623aaSMatthew G. Knepley for (a = 0; a < adjSize; ++a) {ierr = DMLabelSetValue(ovAdjByRank, adj[a], remoteRank);CHKERRQ(ierr);} 541b0a623aaSMatthew G. Knepley } 542b0a623aaSMatthew G. Knepley } 543b0a623aaSMatthew G. Knepley ierr = PetscFree(adj);CHKERRQ(ierr); 544b0a623aaSMatthew G. Knepley ierr = ISRestoreIndices(rootrank, &rrank);CHKERRQ(ierr); 545b0a623aaSMatthew G. Knepley ierr = ISRestoreIndices(leafrank, &nrank);CHKERRQ(ierr); 54624d039d7SMichael Lange /* Add additional overlap levels */ 547be200f8dSMichael Lange for (l = 1; l < levels; l++) { 548be200f8dSMichael Lange /* Propagate point donations over SF to capture remote connections */ 549be200f8dSMichael Lange ierr = DMPlexPartitionLabelPropagate(dm, ovAdjByRank);CHKERRQ(ierr); 550be200f8dSMichael Lange /* Add next level of point donations to the label */ 551be200f8dSMichael Lange ierr = DMPlexPartitionLabelAdjacency(dm, ovAdjByRank);CHKERRQ(ierr); 552be200f8dSMichael Lange } 55326a7d390SMatthew G. Knepley /* We require the closure in the overlap */ 5545abbe4feSMichael Lange ierr = DMPlexPartitionLabelClosure(dm, ovAdjByRank);CHKERRQ(ierr); 555c5929fdfSBarry Smith ierr = PetscOptionsHasName(((PetscObject) dm)->options,((PetscObject) dm)->prefix, "-overlap_view", &flg);CHKERRQ(ierr); 556e540f424SMichael Lange if (flg) { 557825f8a23SLisandro Dalcin PetscViewer viewer; 558825f8a23SLisandro Dalcin ierr = PetscViewerASCIIGetStdout(PetscObjectComm((PetscObject)dm), &viewer);CHKERRQ(ierr); 559825f8a23SLisandro Dalcin ierr = DMLabelView(ovAdjByRank, viewer);CHKERRQ(ierr); 560b0a623aaSMatthew G. Knepley } 561874ddda9SLisandro Dalcin /* Invert sender to receiver label */ 562d67d17b1SMatthew G. Knepley ierr = DMLabelCreate(PETSC_COMM_SELF, "Overlap label", ovLabel);CHKERRQ(ierr); 563874ddda9SLisandro Dalcin ierr = DMPlexPartitionLabelInvert(dm, ovAdjByRank, NULL, *ovLabel);CHKERRQ(ierr); 564a9f1d5b2SMichael Lange /* Add owned points, except for shared local points */ 565a9f1d5b2SMichael Lange for (p = pStart; p < pEnd; ++p) {ierr = DMLabelSetValue(*ovLabel, p, rank);CHKERRQ(ierr);} 566e540f424SMichael Lange for (l = 0; l < nleaves; ++l) { 567a9f1d5b2SMichael Lange ierr = DMLabelClearValue(*ovLabel, local[l], rank);CHKERRQ(ierr); 568a9f1d5b2SMichael Lange ierr = DMLabelSetValue(*ovLabel, remote[l].index, remote[l].rank);CHKERRQ(ierr); 569e540f424SMichael Lange } 570e540f424SMichael Lange /* Clean up */ 5711fd9873aSMichael Lange ierr = DMLabelDestroy(&ovAdjByRank);CHKERRQ(ierr); 572b0a623aaSMatthew G. Knepley PetscFunctionReturn(0); 573b0a623aaSMatthew G. Knepley } 57470034214SMatthew G. Knepley 57524cc2ca5SMatthew G. Knepley /*@C 57624cc2ca5SMatthew G. Knepley DMPlexCreateOverlapMigrationSF - Create an SF describing the new mesh distribution to make the overlap described by the input SF 57724cc2ca5SMatthew G. Knepley 578d083f849SBarry Smith Collective on dm 57924cc2ca5SMatthew G. Knepley 58024cc2ca5SMatthew G. Knepley Input Parameters: 58124cc2ca5SMatthew G. Knepley + dm - The DM 58224cc2ca5SMatthew G. Knepley - overlapSF - The SF mapping ghost points in overlap to owner points on other processes 58324cc2ca5SMatthew G. Knepley 584064ec1f3Sprj- Output Parameter: 585a2b725a8SWilliam Gropp . migrationSF - An SF that maps original points in old locations to points in new locations 58624cc2ca5SMatthew G. Knepley 58724cc2ca5SMatthew G. Knepley Level: developer 58824cc2ca5SMatthew G. Knepley 589dccdeccaSVaclav Hapla .seealso: DMPlexCreateOverlapLabel(), DMPlexDistributeOverlap(), DMPlexDistribute() 59024cc2ca5SMatthew G. Knepley @*/ 59146f9b1c3SMichael Lange PetscErrorCode DMPlexCreateOverlapMigrationSF(DM dm, PetscSF overlapSF, PetscSF *migrationSF) 59246f9b1c3SMichael Lange { 59346f9b1c3SMichael Lange MPI_Comm comm; 5949852e123SBarry Smith PetscMPIInt rank, size; 59546f9b1c3SMichael Lange PetscInt d, dim, p, pStart, pEnd, nroots, nleaves, newLeaves, point, numSharedPoints; 59646f9b1c3SMichael Lange PetscInt *pointDepths, *remoteDepths, *ilocal; 59746f9b1c3SMichael Lange PetscInt *depthRecv, *depthShift, *depthIdx; 59846f9b1c3SMichael Lange PetscSFNode *iremote; 59946f9b1c3SMichael Lange PetscSF pointSF; 60046f9b1c3SMichael Lange const PetscInt *sharedLocal; 60146f9b1c3SMichael Lange const PetscSFNode *overlapRemote, *sharedRemote; 60246f9b1c3SMichael Lange PetscErrorCode ierr; 60346f9b1c3SMichael Lange 60446f9b1c3SMichael Lange PetscFunctionBegin; 60546f9b1c3SMichael Lange PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 60646f9b1c3SMichael Lange ierr = PetscObjectGetComm((PetscObject)dm, &comm);CHKERRQ(ierr); 607ffc4695bSBarry Smith ierr = MPI_Comm_rank(comm, &rank);CHKERRMPI(ierr); 608ffc4695bSBarry Smith ierr = MPI_Comm_size(comm, &size);CHKERRMPI(ierr); 60946f9b1c3SMichael Lange ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr); 61046f9b1c3SMichael Lange 61146f9b1c3SMichael Lange /* Before building the migration SF we need to know the new stratum offsets */ 61246f9b1c3SMichael Lange ierr = PetscSFGetGraph(overlapSF, &nroots, &nleaves, NULL, &overlapRemote);CHKERRQ(ierr); 61346f9b1c3SMichael Lange ierr = PetscMalloc2(nroots, &pointDepths, nleaves, &remoteDepths);CHKERRQ(ierr); 61446f9b1c3SMichael Lange for (d=0; d<dim+1; d++) { 61546f9b1c3SMichael Lange ierr = DMPlexGetDepthStratum(dm, d, &pStart, &pEnd);CHKERRQ(ierr); 61646f9b1c3SMichael Lange for (p=pStart; p<pEnd; p++) pointDepths[p] = d; 61746f9b1c3SMichael Lange } 61846f9b1c3SMichael Lange for (p=0; p<nleaves; p++) remoteDepths[p] = -1; 619ad227feaSJunchao Zhang ierr = PetscSFBcastBegin(overlapSF, MPIU_INT, pointDepths, remoteDepths,MPI_REPLACE);CHKERRQ(ierr); 620ad227feaSJunchao Zhang ierr = PetscSFBcastEnd(overlapSF, MPIU_INT, pointDepths, remoteDepths,MPI_REPLACE);CHKERRQ(ierr); 62146f9b1c3SMichael Lange 6222d4ee042Sprj- /* Count received points in each stratum and compute the internal strata shift */ 62346f9b1c3SMichael Lange ierr = PetscMalloc3(dim+1, &depthRecv, dim+1, &depthShift, dim+1, &depthIdx);CHKERRQ(ierr); 62446f9b1c3SMichael Lange for (d=0; d<dim+1; d++) depthRecv[d]=0; 62546f9b1c3SMichael Lange for (p=0; p<nleaves; p++) depthRecv[remoteDepths[p]]++; 62646f9b1c3SMichael Lange depthShift[dim] = 0; 62746f9b1c3SMichael Lange for (d=0; d<dim; d++) depthShift[d] = depthRecv[dim]; 62846f9b1c3SMichael Lange for (d=1; d<dim; d++) depthShift[d] += depthRecv[0]; 62946f9b1c3SMichael Lange for (d=dim-2; d>0; d--) depthShift[d] += depthRecv[d+1]; 63046f9b1c3SMichael Lange for (d=0; d<dim+1; d++) { 63146f9b1c3SMichael Lange ierr = DMPlexGetDepthStratum(dm, d, &pStart, &pEnd);CHKERRQ(ierr); 63246f9b1c3SMichael Lange depthIdx[d] = pStart + depthShift[d]; 63346f9b1c3SMichael Lange } 63446f9b1c3SMichael Lange 63546f9b1c3SMichael Lange /* Form the overlap SF build an SF that describes the full overlap migration SF */ 63646f9b1c3SMichael Lange ierr = DMPlexGetChart(dm, &pStart, &pEnd);CHKERRQ(ierr); 63746f9b1c3SMichael Lange newLeaves = pEnd - pStart + nleaves; 63809b7985cSMatthew G. Knepley ierr = PetscMalloc1(newLeaves, &ilocal);CHKERRQ(ierr); 63909b7985cSMatthew G. Knepley ierr = PetscMalloc1(newLeaves, &iremote);CHKERRQ(ierr); 64046f9b1c3SMichael Lange /* First map local points to themselves */ 64146f9b1c3SMichael Lange for (d=0; d<dim+1; d++) { 64246f9b1c3SMichael Lange ierr = DMPlexGetDepthStratum(dm, d, &pStart, &pEnd);CHKERRQ(ierr); 64346f9b1c3SMichael Lange for (p=pStart; p<pEnd; p++) { 64446f9b1c3SMichael Lange point = p + depthShift[d]; 64546f9b1c3SMichael Lange ilocal[point] = point; 64646f9b1c3SMichael Lange iremote[point].index = p; 64746f9b1c3SMichael Lange iremote[point].rank = rank; 64846f9b1c3SMichael Lange depthIdx[d]++; 64946f9b1c3SMichael Lange } 65046f9b1c3SMichael Lange } 65146f9b1c3SMichael Lange 65246f9b1c3SMichael Lange /* Add in the remote roots for currently shared points */ 65346f9b1c3SMichael Lange ierr = DMGetPointSF(dm, &pointSF);CHKERRQ(ierr); 65446f9b1c3SMichael Lange ierr = PetscSFGetGraph(pointSF, NULL, &numSharedPoints, &sharedLocal, &sharedRemote);CHKERRQ(ierr); 65546f9b1c3SMichael Lange for (d=0; d<dim+1; d++) { 65646f9b1c3SMichael Lange ierr = DMPlexGetDepthStratum(dm, d, &pStart, &pEnd);CHKERRQ(ierr); 65746f9b1c3SMichael Lange for (p=0; p<numSharedPoints; p++) { 65846f9b1c3SMichael Lange if (pStart <= sharedLocal[p] && sharedLocal[p] < pEnd) { 65946f9b1c3SMichael Lange point = sharedLocal[p] + depthShift[d]; 66046f9b1c3SMichael Lange iremote[point].index = sharedRemote[p].index; 66146f9b1c3SMichael Lange iremote[point].rank = sharedRemote[p].rank; 66246f9b1c3SMichael Lange } 66346f9b1c3SMichael Lange } 66446f9b1c3SMichael Lange } 66546f9b1c3SMichael Lange 66646f9b1c3SMichael Lange /* Now add the incoming overlap points */ 66746f9b1c3SMichael Lange for (p=0; p<nleaves; p++) { 66846f9b1c3SMichael Lange point = depthIdx[remoteDepths[p]]; 66946f9b1c3SMichael Lange ilocal[point] = point; 67046f9b1c3SMichael Lange iremote[point].index = overlapRemote[p].index; 67146f9b1c3SMichael Lange iremote[point].rank = overlapRemote[p].rank; 67246f9b1c3SMichael Lange depthIdx[remoteDepths[p]]++; 67346f9b1c3SMichael Lange } 67415fff7beSMatthew G. Knepley ierr = PetscFree2(pointDepths,remoteDepths);CHKERRQ(ierr); 67546f9b1c3SMichael Lange 67646f9b1c3SMichael Lange ierr = PetscSFCreate(comm, migrationSF);CHKERRQ(ierr); 67746f9b1c3SMichael Lange ierr = PetscObjectSetName((PetscObject) *migrationSF, "Overlap Migration SF");CHKERRQ(ierr); 67846f9b1c3SMichael Lange ierr = PetscSFSetFromOptions(*migrationSF);CHKERRQ(ierr); 67946f9b1c3SMichael Lange ierr = DMPlexGetChart(dm, &pStart, &pEnd);CHKERRQ(ierr); 68046f9b1c3SMichael Lange ierr = PetscSFSetGraph(*migrationSF, pEnd-pStart, newLeaves, ilocal, PETSC_OWN_POINTER, iremote, PETSC_OWN_POINTER);CHKERRQ(ierr); 68146f9b1c3SMichael Lange 68246f9b1c3SMichael Lange ierr = PetscFree3(depthRecv, depthShift, depthIdx);CHKERRQ(ierr); 68370034214SMatthew G. Knepley PetscFunctionReturn(0); 68470034214SMatthew G. Knepley } 68570034214SMatthew G. Knepley 686a9f1d5b2SMichael Lange /*@ 687f0e73a3dSToby Isaac DMPlexStratifyMigrationSF - Rearrange the leaves of a migration sf for stratification. 688a9f1d5b2SMichael Lange 689064ec1f3Sprj- Input Parameters: 690a9f1d5b2SMichael Lange + dm - The DM 691a9f1d5b2SMichael Lange - sf - A star forest with non-ordered leaves, usually defining a DM point migration 692a9f1d5b2SMichael Lange 693a9f1d5b2SMichael Lange Output Parameter: 694a9f1d5b2SMichael Lange . migrationSF - A star forest with added leaf indirection that ensures the resulting DM is stratified 695a9f1d5b2SMichael Lange 696412e9a14SMatthew G. Knepley Note: 697412e9a14SMatthew G. Knepley This lexicographically sorts by (depth, cellType) 698412e9a14SMatthew G. Knepley 699a9f1d5b2SMichael Lange Level: developer 700a9f1d5b2SMichael Lange 701a9f1d5b2SMichael Lange .seealso: DMPlexPartitionLabelCreateSF(), DMPlexDistribute(), DMPlexDistributeOverlap() 702a9f1d5b2SMichael Lange @*/ 703a9f1d5b2SMichael Lange PetscErrorCode DMPlexStratifyMigrationSF(DM dm, PetscSF sf, PetscSF *migrationSF) 704a9f1d5b2SMichael Lange { 705a9f1d5b2SMichael Lange MPI_Comm comm; 7069852e123SBarry Smith PetscMPIInt rank, size; 707412e9a14SMatthew G. Knepley PetscInt d, ldepth, depth, dim, p, pStart, pEnd, nroots, nleaves; 708412e9a14SMatthew G. Knepley PetscSFNode *pointDepths, *remoteDepths; 709412e9a14SMatthew G. Knepley PetscInt *ilocal; 710a9f1d5b2SMichael Lange PetscInt *depthRecv, *depthShift, *depthIdx; 711412e9a14SMatthew G. Knepley PetscInt *ctRecv, *ctShift, *ctIdx; 712a9f1d5b2SMichael Lange const PetscSFNode *iremote; 713a9f1d5b2SMichael Lange PetscErrorCode ierr; 714a9f1d5b2SMichael Lange 715a9f1d5b2SMichael Lange PetscFunctionBegin; 716a9f1d5b2SMichael Lange PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 717a9f1d5b2SMichael Lange ierr = PetscObjectGetComm((PetscObject) dm, &comm);CHKERRQ(ierr); 718ffc4695bSBarry Smith ierr = MPI_Comm_rank(comm, &rank);CHKERRMPI(ierr); 719ffc4695bSBarry Smith ierr = MPI_Comm_size(comm, &size);CHKERRMPI(ierr); 7207fab53ddSMatthew G. Knepley ierr = DMPlexGetDepth(dm, &ldepth);CHKERRQ(ierr); 721412e9a14SMatthew G. Knepley ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr); 722820f2d46SBarry Smith ierr = MPIU_Allreduce(&ldepth, &depth, 1, MPIU_INT, MPI_MAX, comm);CHKERRMPI(ierr); 7232c71b3e2SJacob Faibussowitsch PetscCheckFalse((ldepth >= 0) && (depth != ldepth),PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Inconsistent Plex depth %d != %d", ldepth, depth); 72430b0ce1bSStefano Zampini ierr = PetscLogEventBegin(DMPLEX_PartStratSF,dm,0,0,0);CHKERRQ(ierr); 725a9f1d5b2SMichael Lange 726a9f1d5b2SMichael Lange /* Before building the migration SF we need to know the new stratum offsets */ 727a9f1d5b2SMichael Lange ierr = PetscSFGetGraph(sf, &nroots, &nleaves, NULL, &iremote);CHKERRQ(ierr); 728a9f1d5b2SMichael Lange ierr = PetscMalloc2(nroots, &pointDepths, nleaves, &remoteDepths);CHKERRQ(ierr); 7297fab53ddSMatthew G. Knepley for (d = 0; d < depth+1; ++d) { 730a9f1d5b2SMichael Lange ierr = DMPlexGetDepthStratum(dm, d, &pStart, &pEnd);CHKERRQ(ierr); 731f0e73a3dSToby Isaac for (p = pStart; p < pEnd; ++p) { 732412e9a14SMatthew G. Knepley DMPolytopeType ct; 733f0e73a3dSToby Isaac 734412e9a14SMatthew G. Knepley ierr = DMPlexGetCellType(dm, p, &ct);CHKERRQ(ierr); 735412e9a14SMatthew G. Knepley pointDepths[p].index = d; 736412e9a14SMatthew G. Knepley pointDepths[p].rank = ct; 737f0e73a3dSToby Isaac } 738412e9a14SMatthew G. Knepley } 739412e9a14SMatthew G. Knepley for (p = 0; p < nleaves; ++p) {remoteDepths[p].index = -1; remoteDepths[p].rank = -1;} 740ad227feaSJunchao Zhang ierr = PetscSFBcastBegin(sf, MPIU_2INT, pointDepths, remoteDepths,MPI_REPLACE);CHKERRQ(ierr); 741ad227feaSJunchao Zhang ierr = PetscSFBcastEnd(sf, MPIU_2INT, pointDepths, remoteDepths,MPI_REPLACE);CHKERRQ(ierr); 742412e9a14SMatthew G. Knepley /* Count received points in each stratum and compute the internal strata shift */ 743412e9a14SMatthew G. Knepley ierr = PetscCalloc6(depth+1, &depthRecv, depth+1, &depthShift, depth+1, &depthIdx, DM_NUM_POLYTOPES, &ctRecv, DM_NUM_POLYTOPES, &ctShift, DM_NUM_POLYTOPES, &ctIdx);CHKERRQ(ierr); 744412e9a14SMatthew G. Knepley for (p = 0; p < nleaves; ++p) { 745412e9a14SMatthew G. Knepley if (remoteDepths[p].rank < 0) { 746412e9a14SMatthew G. Knepley ++depthRecv[remoteDepths[p].index]; 747412e9a14SMatthew G. Knepley } else { 748412e9a14SMatthew G. Knepley ++ctRecv[remoteDepths[p].rank]; 749412e9a14SMatthew G. Knepley } 750412e9a14SMatthew G. Knepley } 751412e9a14SMatthew G. Knepley { 752412e9a14SMatthew G. Knepley PetscInt depths[4], dims[4], shift = 0, i, c; 753412e9a14SMatthew G. Knepley 7548238f61eSMatthew G. Knepley /* Cells (depth), Vertices (0), Faces (depth-1), Edges (1) 7558238f61eSMatthew G. Knepley Consider DM_POLYTOPE_FV_GHOST and DM_POLYTOPE_INTERIOR_GHOST as cells 7568238f61eSMatthew G. Knepley */ 757412e9a14SMatthew G. Knepley depths[0] = depth; depths[1] = 0; depths[2] = depth-1; depths[3] = 1; 758412e9a14SMatthew G. Knepley dims[0] = dim; dims[1] = 0; dims[2] = dim-1; dims[3] = 1; 759412e9a14SMatthew G. Knepley for (i = 0; i <= depth; ++i) { 760412e9a14SMatthew G. Knepley const PetscInt dep = depths[i]; 761412e9a14SMatthew G. Knepley const PetscInt dim = dims[i]; 762412e9a14SMatthew G. Knepley 763412e9a14SMatthew G. Knepley for (c = 0; c < DM_NUM_POLYTOPES; ++c) { 7648238f61eSMatthew G. Knepley if (DMPolytopeTypeGetDim((DMPolytopeType) c) != dim && !(i == 0 && (c == DM_POLYTOPE_FV_GHOST || c == DM_POLYTOPE_INTERIOR_GHOST))) continue; 765412e9a14SMatthew G. Knepley ctShift[c] = shift; 766412e9a14SMatthew G. Knepley shift += ctRecv[c]; 767412e9a14SMatthew G. Knepley } 768412e9a14SMatthew G. Knepley depthShift[dep] = shift; 769412e9a14SMatthew G. Knepley shift += depthRecv[dep]; 770412e9a14SMatthew G. Knepley } 771412e9a14SMatthew G. Knepley for (c = 0; c < DM_NUM_POLYTOPES; ++c) { 772412e9a14SMatthew G. Knepley const PetscInt ctDim = DMPolytopeTypeGetDim((DMPolytopeType) c); 773412e9a14SMatthew G. Knepley 7748238f61eSMatthew G. Knepley if ((ctDim < 0 || ctDim > dim) && (c != DM_POLYTOPE_FV_GHOST && c != DM_POLYTOPE_INTERIOR_GHOST)) { 775412e9a14SMatthew G. Knepley ctShift[c] = shift; 776412e9a14SMatthew G. Knepley shift += ctRecv[c]; 777412e9a14SMatthew G. Knepley } 778412e9a14SMatthew G. Knepley } 779412e9a14SMatthew G. Knepley } 780a9f1d5b2SMichael Lange /* Derive a new local permutation based on stratified indices */ 781a9f1d5b2SMichael Lange ierr = PetscMalloc1(nleaves, &ilocal);CHKERRQ(ierr); 7827fab53ddSMatthew G. Knepley for (p = 0; p < nleaves; ++p) { 783412e9a14SMatthew G. Knepley const PetscInt dep = remoteDepths[p].index; 784412e9a14SMatthew G. Knepley const DMPolytopeType ct = (DMPolytopeType) remoteDepths[p].rank; 7857fab53ddSMatthew G. Knepley 786412e9a14SMatthew G. Knepley if ((PetscInt) ct < 0) { 7877fab53ddSMatthew G. Knepley ilocal[p] = depthShift[dep] + depthIdx[dep]; 788412e9a14SMatthew G. Knepley ++depthIdx[dep]; 789412e9a14SMatthew G. Knepley } else { 790412e9a14SMatthew G. Knepley ilocal[p] = ctShift[ct] + ctIdx[ct]; 791412e9a14SMatthew G. Knepley ++ctIdx[ct]; 792412e9a14SMatthew G. Knepley } 793a9f1d5b2SMichael Lange } 794a9f1d5b2SMichael Lange ierr = PetscSFCreate(comm, migrationSF);CHKERRQ(ierr); 795a9f1d5b2SMichael Lange ierr = PetscObjectSetName((PetscObject) *migrationSF, "Migration SF");CHKERRQ(ierr); 796a9f1d5b2SMichael Lange ierr = PetscSFSetGraph(*migrationSF, nroots, nleaves, ilocal, PETSC_OWN_POINTER, iremote, PETSC_COPY_VALUES);CHKERRQ(ierr); 797a9f1d5b2SMichael Lange ierr = PetscFree2(pointDepths,remoteDepths);CHKERRQ(ierr); 798412e9a14SMatthew G. Knepley ierr = PetscFree6(depthRecv, depthShift, depthIdx, ctRecv, ctShift, ctIdx);CHKERRQ(ierr); 79930b0ce1bSStefano Zampini ierr = PetscLogEventEnd(DMPLEX_PartStratSF,dm,0,0,0);CHKERRQ(ierr); 800a9f1d5b2SMichael Lange PetscFunctionReturn(0); 801a9f1d5b2SMichael Lange } 802a9f1d5b2SMichael Lange 80370034214SMatthew G. Knepley /*@ 80470034214SMatthew G. Knepley DMPlexDistributeField - Distribute field data to match a given PetscSF, usually the SF from mesh distribution 80570034214SMatthew G. Knepley 806d083f849SBarry Smith Collective on dm 80770034214SMatthew G. Knepley 80870034214SMatthew G. Knepley Input Parameters: 80970034214SMatthew G. Knepley + dm - The DMPlex object 81070034214SMatthew G. Knepley . pointSF - The PetscSF describing the communication pattern 81170034214SMatthew G. Knepley . originalSection - The PetscSection for existing data layout 812cb15cd0eSMatthew G. Knepley - originalVec - The existing data in a local vector 81370034214SMatthew G. Knepley 81470034214SMatthew G. Knepley Output Parameters: 81570034214SMatthew G. Knepley + newSection - The PetscSF describing the new data layout 816cb15cd0eSMatthew G. Knepley - newVec - The new data in a local vector 81770034214SMatthew G. Knepley 81870034214SMatthew G. Knepley Level: developer 81970034214SMatthew G. Knepley 82070034214SMatthew G. Knepley .seealso: DMPlexDistribute(), DMPlexDistributeFieldIS(), DMPlexDistributeData() 82170034214SMatthew G. Knepley @*/ 82270034214SMatthew G. Knepley PetscErrorCode DMPlexDistributeField(DM dm, PetscSF pointSF, PetscSection originalSection, Vec originalVec, PetscSection newSection, Vec newVec) 82370034214SMatthew G. Knepley { 82470034214SMatthew G. Knepley PetscSF fieldSF; 82570034214SMatthew G. Knepley PetscInt *remoteOffsets, fieldSize; 82670034214SMatthew G. Knepley PetscScalar *originalValues, *newValues; 82770034214SMatthew G. Knepley PetscErrorCode ierr; 82870034214SMatthew G. Knepley 82970034214SMatthew G. Knepley PetscFunctionBegin; 83070034214SMatthew G. Knepley ierr = PetscLogEventBegin(DMPLEX_DistributeField,dm,0,0,0);CHKERRQ(ierr); 83170034214SMatthew G. Knepley ierr = PetscSFDistributeSection(pointSF, originalSection, &remoteOffsets, newSection);CHKERRQ(ierr); 83270034214SMatthew G. Knepley 83370034214SMatthew G. Knepley ierr = PetscSectionGetStorageSize(newSection, &fieldSize);CHKERRQ(ierr); 83470034214SMatthew G. Knepley ierr = VecSetSizes(newVec, fieldSize, PETSC_DETERMINE);CHKERRQ(ierr); 83570034214SMatthew G. Knepley ierr = VecSetType(newVec,dm->vectype);CHKERRQ(ierr); 83670034214SMatthew G. Knepley 83770034214SMatthew G. Knepley ierr = VecGetArray(originalVec, &originalValues);CHKERRQ(ierr); 83870034214SMatthew G. Knepley ierr = VecGetArray(newVec, &newValues);CHKERRQ(ierr); 83970034214SMatthew G. Knepley ierr = PetscSFCreateSectionSF(pointSF, originalSection, remoteOffsets, newSection, &fieldSF);CHKERRQ(ierr); 8408a713f3bSLawrence Mitchell ierr = PetscFree(remoteOffsets);CHKERRQ(ierr); 841ad227feaSJunchao Zhang ierr = PetscSFBcastBegin(fieldSF, MPIU_SCALAR, originalValues, newValues,MPI_REPLACE);CHKERRQ(ierr); 842ad227feaSJunchao Zhang ierr = PetscSFBcastEnd(fieldSF, MPIU_SCALAR, originalValues, newValues,MPI_REPLACE);CHKERRQ(ierr); 84370034214SMatthew G. Knepley ierr = PetscSFDestroy(&fieldSF);CHKERRQ(ierr); 84470034214SMatthew G. Knepley ierr = VecRestoreArray(newVec, &newValues);CHKERRQ(ierr); 84570034214SMatthew G. Knepley ierr = VecRestoreArray(originalVec, &originalValues);CHKERRQ(ierr); 84670034214SMatthew G. Knepley ierr = PetscLogEventEnd(DMPLEX_DistributeField,dm,0,0,0);CHKERRQ(ierr); 84770034214SMatthew G. Knepley PetscFunctionReturn(0); 84870034214SMatthew G. Knepley } 84970034214SMatthew G. Knepley 85070034214SMatthew G. Knepley /*@ 85170034214SMatthew G. Knepley DMPlexDistributeFieldIS - Distribute field data to match a given PetscSF, usually the SF from mesh distribution 85270034214SMatthew G. Knepley 853d083f849SBarry Smith Collective on dm 85470034214SMatthew G. Knepley 85570034214SMatthew G. Knepley Input Parameters: 85670034214SMatthew G. Knepley + dm - The DMPlex object 85770034214SMatthew G. Knepley . pointSF - The PetscSF describing the communication pattern 85870034214SMatthew G. Knepley . originalSection - The PetscSection for existing data layout 85970034214SMatthew G. Knepley - originalIS - The existing data 86070034214SMatthew G. Knepley 86170034214SMatthew G. Knepley Output Parameters: 86270034214SMatthew G. Knepley + newSection - The PetscSF describing the new data layout 86370034214SMatthew G. Knepley - newIS - The new data 86470034214SMatthew G. Knepley 86570034214SMatthew G. Knepley Level: developer 86670034214SMatthew G. Knepley 86770034214SMatthew G. Knepley .seealso: DMPlexDistribute(), DMPlexDistributeField(), DMPlexDistributeData() 86870034214SMatthew G. Knepley @*/ 86970034214SMatthew G. Knepley PetscErrorCode DMPlexDistributeFieldIS(DM dm, PetscSF pointSF, PetscSection originalSection, IS originalIS, PetscSection newSection, IS *newIS) 87070034214SMatthew G. Knepley { 87170034214SMatthew G. Knepley PetscSF fieldSF; 87270034214SMatthew G. Knepley PetscInt *newValues, *remoteOffsets, fieldSize; 87370034214SMatthew G. Knepley const PetscInt *originalValues; 87470034214SMatthew G. Knepley PetscErrorCode ierr; 87570034214SMatthew G. Knepley 87670034214SMatthew G. Knepley PetscFunctionBegin; 87770034214SMatthew G. Knepley ierr = PetscLogEventBegin(DMPLEX_DistributeField,dm,0,0,0);CHKERRQ(ierr); 87870034214SMatthew G. Knepley ierr = PetscSFDistributeSection(pointSF, originalSection, &remoteOffsets, newSection);CHKERRQ(ierr); 87970034214SMatthew G. Knepley 88070034214SMatthew G. Knepley ierr = PetscSectionGetStorageSize(newSection, &fieldSize);CHKERRQ(ierr); 881854ce69bSBarry Smith ierr = PetscMalloc1(fieldSize, &newValues);CHKERRQ(ierr); 88270034214SMatthew G. Knepley 88370034214SMatthew G. Knepley ierr = ISGetIndices(originalIS, &originalValues);CHKERRQ(ierr); 88470034214SMatthew G. Knepley ierr = PetscSFCreateSectionSF(pointSF, originalSection, remoteOffsets, newSection, &fieldSF);CHKERRQ(ierr); 8858a713f3bSLawrence Mitchell ierr = PetscFree(remoteOffsets);CHKERRQ(ierr); 886ad227feaSJunchao Zhang ierr = PetscSFBcastBegin(fieldSF, MPIU_INT, (PetscInt *) originalValues, newValues,MPI_REPLACE);CHKERRQ(ierr); 887ad227feaSJunchao Zhang ierr = PetscSFBcastEnd(fieldSF, MPIU_INT, (PetscInt *) originalValues, newValues,MPI_REPLACE);CHKERRQ(ierr); 88870034214SMatthew G. Knepley ierr = PetscSFDestroy(&fieldSF);CHKERRQ(ierr); 88970034214SMatthew G. Knepley ierr = ISRestoreIndices(originalIS, &originalValues);CHKERRQ(ierr); 89070034214SMatthew G. Knepley ierr = ISCreateGeneral(PetscObjectComm((PetscObject) pointSF), fieldSize, newValues, PETSC_OWN_POINTER, newIS);CHKERRQ(ierr); 89170034214SMatthew G. Knepley ierr = PetscLogEventEnd(DMPLEX_DistributeField,dm,0,0,0);CHKERRQ(ierr); 89270034214SMatthew G. Knepley PetscFunctionReturn(0); 89370034214SMatthew G. Knepley } 89470034214SMatthew G. Knepley 89570034214SMatthew G. Knepley /*@ 89670034214SMatthew G. Knepley DMPlexDistributeData - Distribute field data to match a given PetscSF, usually the SF from mesh distribution 89770034214SMatthew G. Knepley 898d083f849SBarry Smith Collective on dm 89970034214SMatthew G. Knepley 90070034214SMatthew G. Knepley Input Parameters: 90170034214SMatthew G. Knepley + dm - The DMPlex object 90270034214SMatthew G. Knepley . pointSF - The PetscSF describing the communication pattern 90370034214SMatthew G. Knepley . originalSection - The PetscSection for existing data layout 90470034214SMatthew G. Knepley . datatype - The type of data 90570034214SMatthew G. Knepley - originalData - The existing data 90670034214SMatthew G. Knepley 90770034214SMatthew G. Knepley Output Parameters: 90870034214SMatthew G. Knepley + newSection - The PetscSection describing the new data layout 90970034214SMatthew G. Knepley - newData - The new data 91070034214SMatthew G. Knepley 91170034214SMatthew G. Knepley Level: developer 91270034214SMatthew G. Knepley 91370034214SMatthew G. Knepley .seealso: DMPlexDistribute(), DMPlexDistributeField() 91470034214SMatthew G. Knepley @*/ 91570034214SMatthew G. Knepley PetscErrorCode DMPlexDistributeData(DM dm, PetscSF pointSF, PetscSection originalSection, MPI_Datatype datatype, void *originalData, PetscSection newSection, void **newData) 91670034214SMatthew G. Knepley { 91770034214SMatthew G. Knepley PetscSF fieldSF; 91870034214SMatthew G. Knepley PetscInt *remoteOffsets, fieldSize; 91970034214SMatthew G. Knepley PetscMPIInt dataSize; 92070034214SMatthew G. Knepley PetscErrorCode ierr; 92170034214SMatthew G. Knepley 92270034214SMatthew G. Knepley PetscFunctionBegin; 92370034214SMatthew G. Knepley ierr = PetscLogEventBegin(DMPLEX_DistributeData,dm,0,0,0);CHKERRQ(ierr); 92470034214SMatthew G. Knepley ierr = PetscSFDistributeSection(pointSF, originalSection, &remoteOffsets, newSection);CHKERRQ(ierr); 92570034214SMatthew G. Knepley 92670034214SMatthew G. Knepley ierr = PetscSectionGetStorageSize(newSection, &fieldSize);CHKERRQ(ierr); 927ffc4695bSBarry Smith ierr = MPI_Type_size(datatype, &dataSize);CHKERRMPI(ierr); 92870034214SMatthew G. Knepley ierr = PetscMalloc(fieldSize * dataSize, newData);CHKERRQ(ierr); 92970034214SMatthew G. Knepley 93070034214SMatthew G. Knepley ierr = PetscSFCreateSectionSF(pointSF, originalSection, remoteOffsets, newSection, &fieldSF);CHKERRQ(ierr); 9318a713f3bSLawrence Mitchell ierr = PetscFree(remoteOffsets);CHKERRQ(ierr); 932ad227feaSJunchao Zhang ierr = PetscSFBcastBegin(fieldSF, datatype, originalData, *newData,MPI_REPLACE);CHKERRQ(ierr); 933ad227feaSJunchao Zhang ierr = PetscSFBcastEnd(fieldSF, datatype, originalData, *newData,MPI_REPLACE);CHKERRQ(ierr); 93470034214SMatthew G. Knepley ierr = PetscSFDestroy(&fieldSF);CHKERRQ(ierr); 93570034214SMatthew G. Knepley ierr = PetscLogEventEnd(DMPLEX_DistributeData,dm,0,0,0);CHKERRQ(ierr); 93670034214SMatthew G. Knepley PetscFunctionReturn(0); 93770034214SMatthew G. Knepley } 93870034214SMatthew G. Knepley 93924cc2ca5SMatthew G. Knepley static PetscErrorCode DMPlexDistributeCones(DM dm, PetscSF migrationSF, ISLocalToGlobalMapping original, ISLocalToGlobalMapping renumbering, DM dmParallel) 940cc71bff1SMichael Lange { 941cc71bff1SMichael Lange DM_Plex *pmesh = (DM_Plex*) (dmParallel)->data; 942cc71bff1SMichael Lange MPI_Comm comm; 943cc71bff1SMichael Lange PetscSF coneSF; 944cc71bff1SMichael Lange PetscSection originalConeSection, newConeSection; 945ac04eaf7SToby Isaac PetscInt *remoteOffsets, *cones, *globCones, *newCones, newConesSize; 946cc71bff1SMichael Lange PetscBool flg; 947cc71bff1SMichael Lange PetscErrorCode ierr; 948cc71bff1SMichael Lange 949cc71bff1SMichael Lange PetscFunctionBegin; 950cc71bff1SMichael Lange PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 9510c86c063SLisandro Dalcin PetscValidHeaderSpecific(dmParallel, DM_CLASSID, 5); 9520c86c063SLisandro Dalcin ierr = PetscLogEventBegin(DMPLEX_DistributeCones,dm,0,0,0);CHKERRQ(ierr); 953cc71bff1SMichael Lange /* Distribute cone section */ 954cc71bff1SMichael Lange ierr = PetscObjectGetComm((PetscObject)dm, &comm);CHKERRQ(ierr); 955cc71bff1SMichael Lange ierr = DMPlexGetConeSection(dm, &originalConeSection);CHKERRQ(ierr); 956cc71bff1SMichael Lange ierr = DMPlexGetConeSection(dmParallel, &newConeSection);CHKERRQ(ierr); 957cc71bff1SMichael Lange ierr = PetscSFDistributeSection(migrationSF, originalConeSection, &remoteOffsets, newConeSection);CHKERRQ(ierr); 958cc71bff1SMichael Lange ierr = DMSetUp(dmParallel);CHKERRQ(ierr); 959cc71bff1SMichael Lange { 960cc71bff1SMichael Lange PetscInt pStart, pEnd, p; 961cc71bff1SMichael Lange 962cc71bff1SMichael Lange ierr = PetscSectionGetChart(newConeSection, &pStart, &pEnd);CHKERRQ(ierr); 963cc71bff1SMichael Lange for (p = pStart; p < pEnd; ++p) { 964cc71bff1SMichael Lange PetscInt coneSize; 965cc71bff1SMichael Lange ierr = PetscSectionGetDof(newConeSection, p, &coneSize);CHKERRQ(ierr); 966cc71bff1SMichael Lange pmesh->maxConeSize = PetscMax(pmesh->maxConeSize, coneSize); 967cc71bff1SMichael Lange } 968cc71bff1SMichael Lange } 969cc71bff1SMichael Lange /* Communicate and renumber cones */ 970cc71bff1SMichael Lange ierr = PetscSFCreateSectionSF(migrationSF, originalConeSection, remoteOffsets, newConeSection, &coneSF);CHKERRQ(ierr); 9718a713f3bSLawrence Mitchell ierr = PetscFree(remoteOffsets);CHKERRQ(ierr); 972cc71bff1SMichael Lange ierr = DMPlexGetCones(dm, &cones);CHKERRQ(ierr); 973ac04eaf7SToby Isaac if (original) { 974ac04eaf7SToby Isaac PetscInt numCones; 975ac04eaf7SToby Isaac 976367003a6SStefano Zampini ierr = PetscSectionGetStorageSize(originalConeSection,&numCones);CHKERRQ(ierr); 977367003a6SStefano Zampini ierr = PetscMalloc1(numCones,&globCones);CHKERRQ(ierr); 978ac04eaf7SToby Isaac ierr = ISLocalToGlobalMappingApplyBlock(original, numCones, cones, globCones);CHKERRQ(ierr); 979367003a6SStefano Zampini } else { 980ac04eaf7SToby Isaac globCones = cones; 981ac04eaf7SToby Isaac } 982cc71bff1SMichael Lange ierr = DMPlexGetCones(dmParallel, &newCones);CHKERRQ(ierr); 983ad227feaSJunchao Zhang ierr = PetscSFBcastBegin(coneSF, MPIU_INT, globCones, newCones,MPI_REPLACE);CHKERRQ(ierr); 984ad227feaSJunchao Zhang ierr = PetscSFBcastEnd(coneSF, MPIU_INT, globCones, newCones,MPI_REPLACE);CHKERRQ(ierr); 985ac04eaf7SToby Isaac if (original) { 986ac04eaf7SToby Isaac ierr = PetscFree(globCones);CHKERRQ(ierr); 987ac04eaf7SToby Isaac } 988cc71bff1SMichael Lange ierr = PetscSectionGetStorageSize(newConeSection, &newConesSize);CHKERRQ(ierr); 989cc71bff1SMichael Lange ierr = ISGlobalToLocalMappingApplyBlock(renumbering, IS_GTOLM_MASK, newConesSize, newCones, NULL, newCones);CHKERRQ(ierr); 99076bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 9913533c52bSMatthew G. Knepley PetscInt p; 9923533c52bSMatthew G. Knepley PetscBool valid = PETSC_TRUE; 9933533c52bSMatthew G. Knepley for (p = 0; p < newConesSize; ++p) { 994367003a6SStefano Zampini if (newCones[p] < 0) {valid = PETSC_FALSE; ierr = PetscPrintf(PETSC_COMM_SELF, "[%d] Point %D not in overlap SF\n", PetscGlobalRank,p);CHKERRQ(ierr);} 9953533c52bSMatthew G. Knepley } 9962c71b3e2SJacob Faibussowitsch PetscCheckFalse(!valid,PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Invalid global to local map"); 9973533c52bSMatthew G. Knepley } 998c5929fdfSBarry Smith ierr = PetscOptionsHasName(((PetscObject) dm)->options,((PetscObject) dm)->prefix, "-cones_view", &flg);CHKERRQ(ierr); 999cc71bff1SMichael Lange if (flg) { 1000cc71bff1SMichael Lange ierr = PetscPrintf(comm, "Serial Cone Section:\n");CHKERRQ(ierr); 1001a8c5bd36SStefano Zampini ierr = PetscSectionView(originalConeSection, PETSC_VIEWER_STDOUT_(comm));CHKERRQ(ierr); 1002cc71bff1SMichael Lange ierr = PetscPrintf(comm, "Parallel Cone Section:\n");CHKERRQ(ierr); 1003a8c5bd36SStefano Zampini ierr = PetscSectionView(newConeSection, PETSC_VIEWER_STDOUT_(comm));CHKERRQ(ierr); 1004cc71bff1SMichael Lange ierr = PetscSFView(coneSF, NULL);CHKERRQ(ierr); 1005cc71bff1SMichael Lange } 1006cc71bff1SMichael Lange ierr = DMPlexGetConeOrientations(dm, &cones);CHKERRQ(ierr); 1007cc71bff1SMichael Lange ierr = DMPlexGetConeOrientations(dmParallel, &newCones);CHKERRQ(ierr); 1008ad227feaSJunchao Zhang ierr = PetscSFBcastBegin(coneSF, MPIU_INT, cones, newCones,MPI_REPLACE);CHKERRQ(ierr); 1009ad227feaSJunchao Zhang ierr = PetscSFBcastEnd(coneSF, MPIU_INT, cones, newCones,MPI_REPLACE);CHKERRQ(ierr); 1010cc71bff1SMichael Lange ierr = PetscSFDestroy(&coneSF);CHKERRQ(ierr); 1011cc71bff1SMichael Lange ierr = PetscLogEventEnd(DMPLEX_DistributeCones,dm,0,0,0);CHKERRQ(ierr); 1012eaf898f9SPatrick Sanan /* Create supports and stratify DMPlex */ 1013cc71bff1SMichael Lange { 1014cc71bff1SMichael Lange PetscInt pStart, pEnd; 1015cc71bff1SMichael Lange 1016cc71bff1SMichael Lange ierr = PetscSectionGetChart(pmesh->coneSection, &pStart, &pEnd);CHKERRQ(ierr); 1017cc71bff1SMichael Lange ierr = PetscSectionSetChart(pmesh->supportSection, pStart, pEnd);CHKERRQ(ierr); 1018cc71bff1SMichael Lange } 1019cc71bff1SMichael Lange ierr = DMPlexSymmetrize(dmParallel);CHKERRQ(ierr); 1020cc71bff1SMichael Lange ierr = DMPlexStratify(dmParallel);CHKERRQ(ierr); 10211cf84007SMatthew G. Knepley { 10221cf84007SMatthew G. Knepley PetscBool useCone, useClosure, useAnchors; 10231cf84007SMatthew G. Knepley 1024b0441da4SMatthew G. Knepley ierr = DMGetBasicAdjacency(dm, &useCone, &useClosure);CHKERRQ(ierr); 1025b0441da4SMatthew G. Knepley ierr = DMSetBasicAdjacency(dmParallel, useCone, useClosure);CHKERRQ(ierr); 10261cf84007SMatthew G. Knepley ierr = DMPlexGetAdjacencyUseAnchors(dm, &useAnchors);CHKERRQ(ierr); 10271cf84007SMatthew G. Knepley ierr = DMPlexSetAdjacencyUseAnchors(dmParallel, useAnchors);CHKERRQ(ierr); 10281cf84007SMatthew G. Knepley } 1029cc71bff1SMichael Lange PetscFunctionReturn(0); 1030cc71bff1SMichael Lange } 1031cc71bff1SMichael Lange 103224cc2ca5SMatthew G. Knepley static PetscErrorCode DMPlexDistributeCoordinates(DM dm, PetscSF migrationSF, DM dmParallel) 10330df0e737SMichael Lange { 10340df0e737SMichael Lange MPI_Comm comm; 10359318fe57SMatthew G. Knepley DM cdm, cdmParallel; 10360df0e737SMichael Lange PetscSection originalCoordSection, newCoordSection; 10370df0e737SMichael Lange Vec originalCoordinates, newCoordinates; 10380df0e737SMichael Lange PetscInt bs; 103990b157c4SStefano Zampini PetscBool isper; 10400df0e737SMichael Lange const char *name; 10410df0e737SMichael Lange const PetscReal *maxCell, *L; 10425dc8c3f7SMatthew G. Knepley const DMBoundaryType *bd; 10430df0e737SMichael Lange PetscErrorCode ierr; 10440df0e737SMichael Lange 10450df0e737SMichael Lange PetscFunctionBegin; 10460df0e737SMichael Lange PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 10470c86c063SLisandro Dalcin PetscValidHeaderSpecific(dmParallel, DM_CLASSID, 3); 10480df0e737SMichael Lange 10490df0e737SMichael Lange ierr = PetscObjectGetComm((PetscObject)dm, &comm);CHKERRQ(ierr); 10500df0e737SMichael Lange ierr = DMGetCoordinateSection(dm, &originalCoordSection);CHKERRQ(ierr); 10510df0e737SMichael Lange ierr = DMGetCoordinateSection(dmParallel, &newCoordSection);CHKERRQ(ierr); 10520df0e737SMichael Lange ierr = DMGetCoordinatesLocal(dm, &originalCoordinates);CHKERRQ(ierr); 10530df0e737SMichael Lange if (originalCoordinates) { 10548b9ced59SLisandro Dalcin ierr = VecCreate(PETSC_COMM_SELF, &newCoordinates);CHKERRQ(ierr); 10550df0e737SMichael Lange ierr = PetscObjectGetName((PetscObject) originalCoordinates, &name);CHKERRQ(ierr); 10560df0e737SMichael Lange ierr = PetscObjectSetName((PetscObject) newCoordinates, name);CHKERRQ(ierr); 10570df0e737SMichael Lange 10580df0e737SMichael Lange ierr = DMPlexDistributeField(dm, migrationSF, originalCoordSection, originalCoordinates, newCoordSection, newCoordinates);CHKERRQ(ierr); 10590df0e737SMichael Lange ierr = DMSetCoordinatesLocal(dmParallel, newCoordinates);CHKERRQ(ierr); 10600df0e737SMichael Lange ierr = VecGetBlockSize(originalCoordinates, &bs);CHKERRQ(ierr); 10610df0e737SMichael Lange ierr = VecSetBlockSize(newCoordinates, bs);CHKERRQ(ierr); 10620df0e737SMichael Lange ierr = VecDestroy(&newCoordinates);CHKERRQ(ierr); 10630df0e737SMichael Lange } 106490b157c4SStefano Zampini ierr = DMGetPeriodicity(dm, &isper, &maxCell, &L, &bd);CHKERRQ(ierr); 106590b157c4SStefano Zampini ierr = DMSetPeriodicity(dmParallel, isper, maxCell, L, bd);CHKERRQ(ierr); 10669318fe57SMatthew G. Knepley ierr = DMGetCoordinateDM(dm, &cdm);CHKERRQ(ierr); 10679318fe57SMatthew G. Knepley ierr = DMGetCoordinateDM(dmParallel, &cdmParallel);CHKERRQ(ierr); 10689318fe57SMatthew G. Knepley ierr = DMCopyDisc(cdm, cdmParallel);CHKERRQ(ierr); 10690df0e737SMichael Lange PetscFunctionReturn(0); 10700df0e737SMichael Lange } 10710df0e737SMichael Lange 107224cc2ca5SMatthew G. Knepley static PetscErrorCode DMPlexDistributeLabels(DM dm, PetscSF migrationSF, DM dmParallel) 10730df0e737SMichael Lange { 1074df0420ecSMatthew G. Knepley DM_Plex *mesh = (DM_Plex*) dm->data; 10750df0e737SMichael Lange MPI_Comm comm; 10767980c9d4SMatthew G. Knepley DMLabel depthLabel; 10770df0e737SMichael Lange PetscMPIInt rank; 10787980c9d4SMatthew G. Knepley PetscInt depth, d, numLabels, numLocalLabels, l; 1079df0420ecSMatthew G. Knepley PetscBool hasLabels = PETSC_FALSE, lsendDepth, sendDepth; 1080df0420ecSMatthew G. Knepley PetscObjectState depthState = -1; 10810df0e737SMichael Lange PetscErrorCode ierr; 10820df0e737SMichael Lange 10830df0e737SMichael Lange PetscFunctionBegin; 10840df0e737SMichael Lange PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 10850c86c063SLisandro Dalcin PetscValidHeaderSpecific(dmParallel, DM_CLASSID, 3); 10860c86c063SLisandro Dalcin 10870df0e737SMichael Lange ierr = PetscLogEventBegin(DMPLEX_DistributeLabels,dm,0,0,0);CHKERRQ(ierr); 10880df0e737SMichael Lange ierr = PetscObjectGetComm((PetscObject)dm, &comm);CHKERRQ(ierr); 1089ffc4695bSBarry Smith ierr = MPI_Comm_rank(comm, &rank);CHKERRMPI(ierr); 10900df0e737SMichael Lange 1091df0420ecSMatthew G. Knepley /* If the user has changed the depth label, communicate it instead */ 10927980c9d4SMatthew G. Knepley ierr = DMPlexGetDepth(dm, &depth);CHKERRQ(ierr); 10937980c9d4SMatthew G. Knepley ierr = DMPlexGetDepthLabel(dm, &depthLabel);CHKERRQ(ierr); 1094d67d17b1SMatthew G. Knepley if (depthLabel) {ierr = PetscObjectStateGet((PetscObject) depthLabel, &depthState);CHKERRQ(ierr);} 1095df0420ecSMatthew G. Knepley lsendDepth = mesh->depthState != depthState ? PETSC_TRUE : PETSC_FALSE; 1096820f2d46SBarry Smith ierr = MPIU_Allreduce(&lsendDepth, &sendDepth, 1, MPIU_BOOL, MPI_LOR, comm);CHKERRMPI(ierr); 1097df0420ecSMatthew G. Knepley if (sendDepth) { 1098a7998027SVaclav Hapla ierr = DMPlexGetDepthLabel(dmParallel, &dmParallel->depthLabel);CHKERRQ(ierr); 1099a7998027SVaclav Hapla ierr = DMRemoveLabelBySelf(dmParallel, &dmParallel->depthLabel, PETSC_FALSE);CHKERRQ(ierr); 1100df0420ecSMatthew G. Knepley } 1101d995df53SMatthew G. Knepley /* Everyone must have either the same number of labels, or none */ 1102c58f1c22SToby Isaac ierr = DMGetNumLabels(dm, &numLocalLabels);CHKERRQ(ierr); 1103d995df53SMatthew G. Knepley numLabels = numLocalLabels; 1104ffc4695bSBarry Smith ierr = MPI_Bcast(&numLabels, 1, MPIU_INT, 0, comm);CHKERRMPI(ierr); 1105627847f0SMatthew G. Knepley if (numLabels == numLocalLabels) hasLabels = PETSC_TRUE; 11065d80c0bfSVaclav Hapla for (l = 0; l < numLabels; ++l) { 1107bdd2d751SMichael Lange DMLabel label = NULL, labelNew = NULL; 110883e10cb3SLisandro Dalcin PetscBool isDepth, lisOutput = PETSC_TRUE, isOutput; 1109d67d17b1SMatthew G. Knepley const char *name = NULL; 11100df0e737SMichael Lange 1111d67d17b1SMatthew G. Knepley if (hasLabels) { 1112d67d17b1SMatthew G. Knepley ierr = DMGetLabelByNum(dm, l, &label);CHKERRQ(ierr); 11130df0e737SMichael Lange /* Skip "depth" because it is recreated */ 1114d67d17b1SMatthew G. Knepley ierr = PetscObjectGetName((PetscObject) label, &name);CHKERRQ(ierr); 1115d67d17b1SMatthew G. Knepley ierr = PetscStrcmp(name, "depth", &isDepth);CHKERRQ(ierr); 1116d67d17b1SMatthew G. Knepley } 1117ffc4695bSBarry Smith ierr = MPI_Bcast(&isDepth, 1, MPIU_BOOL, 0, comm);CHKERRMPI(ierr); 111883e10cb3SLisandro Dalcin if (isDepth && !sendDepth) continue; 1119bdd2d751SMichael Lange ierr = DMLabelDistribute(label, migrationSF, &labelNew);CHKERRQ(ierr); 112083e10cb3SLisandro Dalcin if (isDepth) { 11217980c9d4SMatthew G. Knepley /* Put in any missing strata which can occur if users are managing the depth label themselves */ 11227980c9d4SMatthew G. Knepley PetscInt gdepth; 11237980c9d4SMatthew G. Knepley 1124820f2d46SBarry Smith ierr = MPIU_Allreduce(&depth, &gdepth, 1, MPIU_INT, MPI_MAX, comm);CHKERRMPI(ierr); 11252c71b3e2SJacob Faibussowitsch PetscCheckFalse((depth >= 0) && (gdepth != depth),PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Inconsistent Plex depth %d != %d", depth, gdepth); 11267980c9d4SMatthew G. Knepley for (d = 0; d <= gdepth; ++d) { 11277980c9d4SMatthew G. Knepley PetscBool has; 11287980c9d4SMatthew G. Knepley 11297980c9d4SMatthew G. Knepley ierr = DMLabelHasStratum(labelNew, d, &has);CHKERRQ(ierr); 113083e10cb3SLisandro Dalcin if (!has) {ierr = DMLabelAddStratum(labelNew, d);CHKERRQ(ierr);} 11317980c9d4SMatthew G. Knepley } 11327980c9d4SMatthew G. Knepley } 1133c58f1c22SToby Isaac ierr = DMAddLabel(dmParallel, labelNew);CHKERRQ(ierr); 113483e10cb3SLisandro Dalcin /* Put the output flag in the new label */ 1135d67d17b1SMatthew G. Knepley if (hasLabels) {ierr = DMGetLabelOutput(dm, name, &lisOutput);CHKERRQ(ierr);} 1136820f2d46SBarry Smith ierr = MPIU_Allreduce(&lisOutput, &isOutput, 1, MPIU_BOOL, MPI_LAND, comm);CHKERRMPI(ierr); 1137d67d17b1SMatthew G. Knepley ierr = PetscObjectGetName((PetscObject) labelNew, &name);CHKERRQ(ierr); 1138d67d17b1SMatthew G. Knepley ierr = DMSetLabelOutput(dmParallel, name, isOutput);CHKERRQ(ierr); 113908f633c4SVaclav Hapla ierr = DMLabelDestroy(&labelNew);CHKERRQ(ierr); 11400df0e737SMichael Lange } 11410df0e737SMichael Lange ierr = PetscLogEventEnd(DMPLEX_DistributeLabels,dm,0,0,0);CHKERRQ(ierr); 11420df0e737SMichael Lange PetscFunctionReturn(0); 11430df0e737SMichael Lange } 11440df0e737SMichael Lange 114524cc2ca5SMatthew G. Knepley static PetscErrorCode DMPlexDistributeSetupTree(DM dm, PetscSF migrationSF, ISLocalToGlobalMapping original, ISLocalToGlobalMapping renumbering, DM dmParallel) 1146a6f36705SMichael Lange { 114715078cd4SMichael Lange DM_Plex *mesh = (DM_Plex*) dm->data; 114815078cd4SMichael Lange DM_Plex *pmesh = (DM_Plex*) (dmParallel)->data; 1149a6f36705SMichael Lange MPI_Comm comm; 1150a6f36705SMichael Lange DM refTree; 1151a6f36705SMichael Lange PetscSection origParentSection, newParentSection; 1152a6f36705SMichael Lange PetscInt *origParents, *origChildIDs; 1153a6f36705SMichael Lange PetscBool flg; 1154a6f36705SMichael Lange PetscErrorCode ierr; 1155a6f36705SMichael Lange 1156a6f36705SMichael Lange PetscFunctionBegin; 1157a6f36705SMichael Lange PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 11580c86c063SLisandro Dalcin PetscValidHeaderSpecific(dmParallel, DM_CLASSID, 5); 1159a6f36705SMichael Lange ierr = PetscObjectGetComm((PetscObject)dm, &comm);CHKERRQ(ierr); 1160a6f36705SMichael Lange 1161a6f36705SMichael Lange /* Set up tree */ 1162a6f36705SMichael Lange ierr = DMPlexGetReferenceTree(dm,&refTree);CHKERRQ(ierr); 1163a6f36705SMichael Lange ierr = DMPlexSetReferenceTree(dmParallel,refTree);CHKERRQ(ierr); 1164a6f36705SMichael Lange ierr = DMPlexGetTree(dm,&origParentSection,&origParents,&origChildIDs,NULL,NULL);CHKERRQ(ierr); 1165a6f36705SMichael Lange if (origParentSection) { 1166a6f36705SMichael Lange PetscInt pStart, pEnd; 116708633170SToby Isaac PetscInt *newParents, *newChildIDs, *globParents; 1168a6f36705SMichael Lange PetscInt *remoteOffsetsParents, newParentSize; 1169a6f36705SMichael Lange PetscSF parentSF; 1170a6f36705SMichael Lange 1171a6f36705SMichael Lange ierr = DMPlexGetChart(dmParallel, &pStart, &pEnd);CHKERRQ(ierr); 1172a6f36705SMichael Lange ierr = PetscSectionCreate(PetscObjectComm((PetscObject)dmParallel),&newParentSection);CHKERRQ(ierr); 1173a6f36705SMichael Lange ierr = PetscSectionSetChart(newParentSection,pStart,pEnd);CHKERRQ(ierr); 1174a6f36705SMichael Lange ierr = PetscSFDistributeSection(migrationSF, origParentSection, &remoteOffsetsParents, newParentSection);CHKERRQ(ierr); 1175a6f36705SMichael Lange ierr = PetscSFCreateSectionSF(migrationSF, origParentSection, remoteOffsetsParents, newParentSection, &parentSF);CHKERRQ(ierr); 11768a713f3bSLawrence Mitchell ierr = PetscFree(remoteOffsetsParents);CHKERRQ(ierr); 1177a6f36705SMichael Lange ierr = PetscSectionGetStorageSize(newParentSection,&newParentSize);CHKERRQ(ierr); 1178a6f36705SMichael Lange ierr = PetscMalloc2(newParentSize,&newParents,newParentSize,&newChildIDs);CHKERRQ(ierr); 117908633170SToby Isaac if (original) { 118008633170SToby Isaac PetscInt numParents; 118108633170SToby Isaac 118208633170SToby Isaac ierr = PetscSectionGetStorageSize(origParentSection,&numParents);CHKERRQ(ierr); 118308633170SToby Isaac ierr = PetscMalloc1(numParents,&globParents);CHKERRQ(ierr); 118408633170SToby Isaac ierr = ISLocalToGlobalMappingApplyBlock(original, numParents, origParents, globParents);CHKERRQ(ierr); 118508633170SToby Isaac } 118608633170SToby Isaac else { 118708633170SToby Isaac globParents = origParents; 118808633170SToby Isaac } 1189ad227feaSJunchao Zhang ierr = PetscSFBcastBegin(parentSF, MPIU_INT, globParents, newParents,MPI_REPLACE);CHKERRQ(ierr); 1190ad227feaSJunchao Zhang ierr = PetscSFBcastEnd(parentSF, MPIU_INT, globParents, newParents,MPI_REPLACE);CHKERRQ(ierr); 119108633170SToby Isaac if (original) { 119208633170SToby Isaac ierr = PetscFree(globParents);CHKERRQ(ierr); 119308633170SToby Isaac } 1194ad227feaSJunchao Zhang ierr = PetscSFBcastBegin(parentSF, MPIU_INT, origChildIDs, newChildIDs,MPI_REPLACE);CHKERRQ(ierr); 1195ad227feaSJunchao Zhang ierr = PetscSFBcastEnd(parentSF, MPIU_INT, origChildIDs, newChildIDs,MPI_REPLACE);CHKERRQ(ierr); 1196a6f36705SMichael Lange ierr = ISGlobalToLocalMappingApplyBlock(renumbering,IS_GTOLM_MASK, newParentSize, newParents, NULL, newParents);CHKERRQ(ierr); 119776bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 11984a54e071SToby Isaac PetscInt p; 11994a54e071SToby Isaac PetscBool valid = PETSC_TRUE; 12004a54e071SToby Isaac for (p = 0; p < newParentSize; ++p) { 12014a54e071SToby Isaac if (newParents[p] < 0) {valid = PETSC_FALSE; ierr = PetscPrintf(PETSC_COMM_SELF, "Point %d not in overlap SF\n", p);CHKERRQ(ierr);} 12024a54e071SToby Isaac } 12032c71b3e2SJacob Faibussowitsch PetscCheckFalse(!valid,PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Invalid global to local map"); 12044a54e071SToby Isaac } 1205c5929fdfSBarry Smith ierr = PetscOptionsHasName(((PetscObject) dm)->options,((PetscObject) dm)->prefix, "-parents_view", &flg);CHKERRQ(ierr); 1206a6f36705SMichael Lange if (flg) { 1207a6f36705SMichael Lange ierr = PetscPrintf(comm, "Serial Parent Section: \n");CHKERRQ(ierr); 1208a8c5bd36SStefano Zampini ierr = PetscSectionView(origParentSection, PETSC_VIEWER_STDOUT_(comm));CHKERRQ(ierr); 1209a6f36705SMichael Lange ierr = PetscPrintf(comm, "Parallel Parent Section: \n");CHKERRQ(ierr); 1210a8c5bd36SStefano Zampini ierr = PetscSectionView(newParentSection, PETSC_VIEWER_STDOUT_(comm));CHKERRQ(ierr); 1211a6f36705SMichael Lange ierr = PetscSFView(parentSF, NULL);CHKERRQ(ierr); 1212a6f36705SMichael Lange } 1213a6f36705SMichael Lange ierr = DMPlexSetTree(dmParallel,newParentSection,newParents,newChildIDs);CHKERRQ(ierr); 1214a6f36705SMichael Lange ierr = PetscSectionDestroy(&newParentSection);CHKERRQ(ierr); 1215a6f36705SMichael Lange ierr = PetscFree2(newParents,newChildIDs);CHKERRQ(ierr); 1216a6f36705SMichael Lange ierr = PetscSFDestroy(&parentSF);CHKERRQ(ierr); 1217a6f36705SMichael Lange } 121815078cd4SMichael Lange pmesh->useAnchors = mesh->useAnchors; 1219a6f36705SMichael Lange PetscFunctionReturn(0); 1220a6f36705SMichael Lange } 12210df0e737SMichael Lange 122224cc2ca5SMatthew G. Knepley PETSC_UNUSED static PetscErrorCode DMPlexDistributeSF(DM dm, PetscSF migrationSF, DM dmParallel) 12234eca1733SMichael Lange { 12249852e123SBarry Smith PetscMPIInt rank, size; 12254eca1733SMichael Lange MPI_Comm comm; 12264eca1733SMichael Lange PetscErrorCode ierr; 12274eca1733SMichael Lange 12284eca1733SMichael Lange PetscFunctionBegin; 12294eca1733SMichael Lange PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 12300c86c063SLisandro Dalcin PetscValidHeaderSpecific(dmParallel, DM_CLASSID, 3); 12314eca1733SMichael Lange 12324eca1733SMichael Lange /* Create point SF for parallel mesh */ 12334eca1733SMichael Lange ierr = PetscLogEventBegin(DMPLEX_DistributeSF,dm,0,0,0);CHKERRQ(ierr); 12344eca1733SMichael Lange ierr = PetscObjectGetComm((PetscObject)dm, &comm);CHKERRQ(ierr); 1235ffc4695bSBarry Smith ierr = MPI_Comm_rank(comm, &rank);CHKERRMPI(ierr); 1236ffc4695bSBarry Smith ierr = MPI_Comm_size(comm, &size);CHKERRMPI(ierr); 12374eca1733SMichael Lange { 12384eca1733SMichael Lange const PetscInt *leaves; 12394eca1733SMichael Lange PetscSFNode *remotePoints, *rowners, *lowners; 12404eca1733SMichael Lange PetscInt numRoots, numLeaves, numGhostPoints = 0, p, gp, *ghostPoints; 12414eca1733SMichael Lange PetscInt pStart, pEnd; 12424eca1733SMichael Lange 12434eca1733SMichael Lange ierr = DMPlexGetChart(dmParallel, &pStart, &pEnd);CHKERRQ(ierr); 12444eca1733SMichael Lange ierr = PetscSFGetGraph(migrationSF, &numRoots, &numLeaves, &leaves, NULL);CHKERRQ(ierr); 12454eca1733SMichael Lange ierr = PetscMalloc2(numRoots,&rowners,numLeaves,&lowners);CHKERRQ(ierr); 12464eca1733SMichael Lange for (p=0; p<numRoots; p++) { 12474eca1733SMichael Lange rowners[p].rank = -1; 12484eca1733SMichael Lange rowners[p].index = -1; 12494eca1733SMichael Lange } 1250ad227feaSJunchao Zhang ierr = PetscSFBcastBegin(migrationSF, MPIU_2INT, rowners, lowners,MPI_REPLACE);CHKERRQ(ierr); 1251ad227feaSJunchao Zhang ierr = PetscSFBcastEnd(migrationSF, MPIU_2INT, rowners, lowners,MPI_REPLACE);CHKERRQ(ierr); 12524eca1733SMichael Lange for (p = 0; p < numLeaves; ++p) { 12534eca1733SMichael Lange if (lowners[p].rank < 0 || lowners[p].rank == rank) { /* Either put in a bid or we know we own it */ 12544eca1733SMichael Lange lowners[p].rank = rank; 12554eca1733SMichael Lange lowners[p].index = leaves ? leaves[p] : p; 12564eca1733SMichael Lange } else if (lowners[p].rank >= 0) { /* Point already claimed so flag so that MAXLOC does not listen to us */ 12574eca1733SMichael Lange lowners[p].rank = -2; 12584eca1733SMichael Lange lowners[p].index = -2; 12594eca1733SMichael Lange } 12604eca1733SMichael Lange } 12614eca1733SMichael Lange for (p=0; p<numRoots; p++) { /* Root must not participate in the rediction, flag so that MAXLOC does not use */ 12624eca1733SMichael Lange rowners[p].rank = -3; 12634eca1733SMichael Lange rowners[p].index = -3; 12644eca1733SMichael Lange } 12654eca1733SMichael Lange ierr = PetscSFReduceBegin(migrationSF, MPIU_2INT, lowners, rowners, MPI_MAXLOC);CHKERRQ(ierr); 12664eca1733SMichael Lange ierr = PetscSFReduceEnd(migrationSF, MPIU_2INT, lowners, rowners, MPI_MAXLOC);CHKERRQ(ierr); 1267ad227feaSJunchao Zhang ierr = PetscSFBcastBegin(migrationSF, MPIU_2INT, rowners, lowners,MPI_REPLACE);CHKERRQ(ierr); 1268ad227feaSJunchao Zhang ierr = PetscSFBcastEnd(migrationSF, MPIU_2INT, rowners, lowners,MPI_REPLACE);CHKERRQ(ierr); 12694eca1733SMichael Lange for (p = 0; p < numLeaves; ++p) { 12702c71b3e2SJacob Faibussowitsch PetscCheckFalse(lowners[p].rank < 0 || lowners[p].index < 0,PETSC_COMM_SELF,PETSC_ERR_PLIB,"Cell partition corrupt: point not claimed"); 12714eca1733SMichael Lange if (lowners[p].rank != rank) ++numGhostPoints; 12724eca1733SMichael Lange } 12734eca1733SMichael Lange ierr = PetscMalloc1(numGhostPoints, &ghostPoints);CHKERRQ(ierr); 12744eca1733SMichael Lange ierr = PetscMalloc1(numGhostPoints, &remotePoints);CHKERRQ(ierr); 12754eca1733SMichael Lange for (p = 0, gp = 0; p < numLeaves; ++p) { 12764eca1733SMichael Lange if (lowners[p].rank != rank) { 12774eca1733SMichael Lange ghostPoints[gp] = leaves ? leaves[p] : p; 12784eca1733SMichael Lange remotePoints[gp].rank = lowners[p].rank; 12794eca1733SMichael Lange remotePoints[gp].index = lowners[p].index; 12804eca1733SMichael Lange ++gp; 12814eca1733SMichael Lange } 12824eca1733SMichael Lange } 12834eca1733SMichael Lange ierr = PetscFree2(rowners,lowners);CHKERRQ(ierr); 12844eca1733SMichael Lange ierr = PetscSFSetGraph((dmParallel)->sf, pEnd - pStart, numGhostPoints, ghostPoints, PETSC_OWN_POINTER, remotePoints, PETSC_OWN_POINTER);CHKERRQ(ierr); 12854eca1733SMichael Lange ierr = PetscSFSetFromOptions((dmParallel)->sf);CHKERRQ(ierr); 12864eca1733SMichael Lange } 12871cf84007SMatthew G. Knepley { 12881cf84007SMatthew G. Knepley PetscBool useCone, useClosure, useAnchors; 12891cf84007SMatthew G. Knepley 1290b0441da4SMatthew G. Knepley ierr = DMGetBasicAdjacency(dm, &useCone, &useClosure);CHKERRQ(ierr); 1291b0441da4SMatthew G. Knepley ierr = DMSetBasicAdjacency(dmParallel, useCone, useClosure);CHKERRQ(ierr); 12921cf84007SMatthew G. Knepley ierr = DMPlexGetAdjacencyUseAnchors(dm, &useAnchors);CHKERRQ(ierr); 12931cf84007SMatthew G. Knepley ierr = DMPlexSetAdjacencyUseAnchors(dmParallel, useAnchors);CHKERRQ(ierr); 12941cf84007SMatthew G. Knepley } 12954eca1733SMichael Lange ierr = PetscLogEventEnd(DMPLEX_DistributeSF,dm,0,0,0);CHKERRQ(ierr); 12964eca1733SMichael Lange PetscFunctionReturn(0); 12974eca1733SMichael Lange } 12984eca1733SMichael Lange 129998ba2d7fSLawrence Mitchell /*@ 130098ba2d7fSLawrence Mitchell DMPlexSetPartitionBalance - Should distribution of the DM attempt to balance the shared point partition? 130198ba2d7fSLawrence Mitchell 130298ba2d7fSLawrence Mitchell Input Parameters: 130398ba2d7fSLawrence Mitchell + dm - The DMPlex object 130498ba2d7fSLawrence Mitchell - flg - Balance the partition? 130598ba2d7fSLawrence Mitchell 130698ba2d7fSLawrence Mitchell Level: intermediate 130798ba2d7fSLawrence Mitchell 130898ba2d7fSLawrence Mitchell .seealso: DMPlexDistribute(), DMPlexGetPartitionBalance() 130998ba2d7fSLawrence Mitchell @*/ 131098ba2d7fSLawrence Mitchell PetscErrorCode DMPlexSetPartitionBalance(DM dm, PetscBool flg) 131198ba2d7fSLawrence Mitchell { 131298ba2d7fSLawrence Mitchell DM_Plex *mesh = (DM_Plex *)dm->data; 131398ba2d7fSLawrence Mitchell 131498ba2d7fSLawrence Mitchell PetscFunctionBegin; 131598ba2d7fSLawrence Mitchell mesh->partitionBalance = flg; 131698ba2d7fSLawrence Mitchell PetscFunctionReturn(0); 131798ba2d7fSLawrence Mitchell } 131898ba2d7fSLawrence Mitchell 131998ba2d7fSLawrence Mitchell /*@ 132098ba2d7fSLawrence Mitchell DMPlexGetPartitionBalance - Does distribution of the DM attempt to balance the shared point partition? 132198ba2d7fSLawrence Mitchell 132298ba2d7fSLawrence Mitchell Input Parameter: 1323a2b725a8SWilliam Gropp . dm - The DMPlex object 132498ba2d7fSLawrence Mitchell 132598ba2d7fSLawrence Mitchell Output Parameter: 1326a2b725a8SWilliam Gropp . flg - Balance the partition? 132798ba2d7fSLawrence Mitchell 132898ba2d7fSLawrence Mitchell Level: intermediate 132998ba2d7fSLawrence Mitchell 133098ba2d7fSLawrence Mitchell .seealso: DMPlexDistribute(), DMPlexSetPartitionBalance() 133198ba2d7fSLawrence Mitchell @*/ 133298ba2d7fSLawrence Mitchell PetscErrorCode DMPlexGetPartitionBalance(DM dm, PetscBool *flg) 133398ba2d7fSLawrence Mitchell { 133498ba2d7fSLawrence Mitchell DM_Plex *mesh = (DM_Plex *)dm->data; 133598ba2d7fSLawrence Mitchell 133698ba2d7fSLawrence Mitchell PetscFunctionBegin; 133798ba2d7fSLawrence Mitchell PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 1338534a8f05SLisandro Dalcin PetscValidBoolPointer(flg, 2); 133998ba2d7fSLawrence Mitchell *flg = mesh->partitionBalance; 134098ba2d7fSLawrence Mitchell PetscFunctionReturn(0); 134198ba2d7fSLawrence Mitchell } 134298ba2d7fSLawrence Mitchell 1343fc02256fSLawrence Mitchell typedef struct { 1344fc02256fSLawrence Mitchell PetscInt vote, rank, index; 1345fc02256fSLawrence Mitchell } Petsc3Int; 1346fc02256fSLawrence Mitchell 1347fc02256fSLawrence Mitchell /* MaxLoc, but carry a third piece of information around */ 13482eb0eadbSSatish Balay static void MPIAPI MaxLocCarry(void *in_, void *inout_, PetscMPIInt *len_, MPI_Datatype *dtype) 1349fc02256fSLawrence Mitchell { 1350fc02256fSLawrence Mitchell Petsc3Int *a = (Petsc3Int *)inout_; 1351fc02256fSLawrence Mitchell Petsc3Int *b = (Petsc3Int *)in_; 1352fc02256fSLawrence Mitchell PetscInt i, len = *len_; 1353fc02256fSLawrence Mitchell for (i = 0; i < len; i++) { 1354fc02256fSLawrence Mitchell if (a[i].vote < b[i].vote) { 1355fc02256fSLawrence Mitchell a[i].vote = b[i].vote; 1356fc02256fSLawrence Mitchell a[i].rank = b[i].rank; 1357fc02256fSLawrence Mitchell a[i].index = b[i].index; 1358fc02256fSLawrence Mitchell } else if (a[i].vote <= b[i].vote) { 1359fc02256fSLawrence Mitchell if (a[i].rank >= b[i].rank) { 1360fc02256fSLawrence Mitchell a[i].rank = b[i].rank; 1361fc02256fSLawrence Mitchell a[i].index = b[i].index; 1362fc02256fSLawrence Mitchell } 1363fc02256fSLawrence Mitchell } 1364fc02256fSLawrence Mitchell } 1365fc02256fSLawrence Mitchell } 1366fc02256fSLawrence Mitchell 1367f5bf2dbfSMichael Lange /*@C 1368a8c5bd36SStefano Zampini DMPlexCreatePointSF - Build a point SF from an SF describing a point migration 1369f5bf2dbfSMichael Lange 1370064ec1f3Sprj- Input Parameters: 1371f5bf2dbfSMichael Lange + dm - The source DMPlex object 1372f5bf2dbfSMichael Lange . migrationSF - The star forest that describes the parallel point remapping 1373d8d19677SJose E. Roman - ownership - Flag causing a vote to determine point ownership 1374f5bf2dbfSMichael Lange 1375f5bf2dbfSMichael Lange Output Parameter: 1376d8d19677SJose E. Roman . pointSF - The star forest describing the point overlap in the remapped DM 1377f5bf2dbfSMichael Lange 13783618482eSVaclav Hapla Notes: 13793618482eSVaclav Hapla Output pointSF is guaranteed to have the array of local indices (leaves) sorted. 13803618482eSVaclav Hapla 1381f5bf2dbfSMichael Lange Level: developer 1382f5bf2dbfSMichael Lange 1383f5bf2dbfSMichael Lange .seealso: DMPlexDistribute(), DMPlexDistributeOverlap() 1384f5bf2dbfSMichael Lange @*/ 1385f5bf2dbfSMichael Lange PetscErrorCode DMPlexCreatePointSF(DM dm, PetscSF migrationSF, PetscBool ownership, PetscSF *pointSF) 1386f5bf2dbfSMichael Lange { 138723193802SMatthew G. Knepley PetscMPIInt rank, size; 13881627f6ccSMichael Lange PetscInt p, nroots, nleaves, idx, npointLeaves; 1389f5bf2dbfSMichael Lange PetscInt *pointLocal; 1390f5bf2dbfSMichael Lange const PetscInt *leaves; 1391f5bf2dbfSMichael Lange const PetscSFNode *roots; 1392f5bf2dbfSMichael Lange PetscSFNode *rootNodes, *leafNodes, *pointRemote; 139323193802SMatthew G. Knepley Vec shifts; 1394cae3e4f3SLawrence Mitchell const PetscInt numShifts = 13759; 139523193802SMatthew G. Knepley const PetscScalar *shift = NULL; 139623193802SMatthew G. Knepley const PetscBool shiftDebug = PETSC_FALSE; 139798ba2d7fSLawrence Mitchell PetscBool balance; 1398f5bf2dbfSMichael Lange PetscErrorCode ierr; 1399f5bf2dbfSMichael Lange 1400f5bf2dbfSMichael Lange PetscFunctionBegin; 1401f5bf2dbfSMichael Lange PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 1402ffc4695bSBarry Smith ierr = MPI_Comm_rank(PetscObjectComm((PetscObject) dm), &rank);CHKERRMPI(ierr); 1403ffc4695bSBarry Smith ierr = MPI_Comm_size(PetscObjectComm((PetscObject) dm), &size);CHKERRMPI(ierr); 140430b0ce1bSStefano Zampini ierr = PetscLogEventBegin(DMPLEX_CreatePointSF,dm,0,0,0);CHKERRQ(ierr); 1405f5bf2dbfSMichael Lange 140698ba2d7fSLawrence Mitchell ierr = DMPlexGetPartitionBalance(dm, &balance);CHKERRQ(ierr); 1407f5bf2dbfSMichael Lange ierr = PetscSFGetGraph(migrationSF, &nroots, &nleaves, &leaves, &roots);CHKERRQ(ierr); 1408f5bf2dbfSMichael Lange ierr = PetscMalloc2(nroots, &rootNodes, nleaves, &leafNodes);CHKERRQ(ierr); 1409f5bf2dbfSMichael Lange if (ownership) { 1410fc02256fSLawrence Mitchell MPI_Op op; 1411fc02256fSLawrence Mitchell MPI_Datatype datatype; 1412fc02256fSLawrence Mitchell Petsc3Int *rootVote = NULL, *leafVote = NULL; 141323193802SMatthew G. Knepley /* If balancing, we compute a random cyclic shift of the rank for each remote point. That way, the max will evenly distribute among ranks. */ 141498ba2d7fSLawrence Mitchell if (balance) { 141523193802SMatthew G. Knepley PetscRandom r; 141623193802SMatthew G. Knepley 141723193802SMatthew G. Knepley ierr = PetscRandomCreate(PETSC_COMM_SELF, &r);CHKERRQ(ierr); 1418cae3e4f3SLawrence Mitchell ierr = PetscRandomSetInterval(r, 0, 2467*size);CHKERRQ(ierr); 141923193802SMatthew G. Knepley ierr = VecCreate(PETSC_COMM_SELF, &shifts);CHKERRQ(ierr); 142023193802SMatthew G. Knepley ierr = VecSetSizes(shifts, numShifts, numShifts);CHKERRQ(ierr); 142123193802SMatthew G. Knepley ierr = VecSetType(shifts, VECSTANDARD);CHKERRQ(ierr); 142223193802SMatthew G. Knepley ierr = VecSetRandom(shifts, r);CHKERRQ(ierr); 142323193802SMatthew G. Knepley ierr = PetscRandomDestroy(&r);CHKERRQ(ierr); 142423193802SMatthew G. Knepley ierr = VecGetArrayRead(shifts, &shift);CHKERRQ(ierr); 142523193802SMatthew G. Knepley } 142623193802SMatthew G. Knepley 1427fc02256fSLawrence Mitchell ierr = PetscMalloc1(nroots, &rootVote);CHKERRQ(ierr); 1428fc02256fSLawrence Mitchell ierr = PetscMalloc1(nleaves, &leafVote);CHKERRQ(ierr); 142923193802SMatthew G. Knepley /* Point ownership vote: Process with highest rank owns shared points */ 1430f5bf2dbfSMichael Lange for (p = 0; p < nleaves; ++p) { 143123193802SMatthew G. Knepley if (shiftDebug) { 1432e7bcd635SMatthew G. Knepley ierr = PetscSynchronizedPrintf(PetscObjectComm((PetscObject) dm), "[%d] Point %D RemotePoint %D Shift %D MyRank %D\n", rank, leaves ? leaves[p] : p, roots[p].index, (PetscInt) PetscRealPart(shift[roots[p].index%numShifts]), (rank + (shift ? (PetscInt) PetscRealPart(shift[roots[p].index%numShifts]) : 0))%size);CHKERRQ(ierr); 143323193802SMatthew G. Knepley } 1434f5bf2dbfSMichael Lange /* Either put in a bid or we know we own it */ 1435fc02256fSLawrence Mitchell leafVote[p].vote = (rank + (shift ? (PetscInt) PetscRealPart(shift[roots[p].index%numShifts]) : 0))%size; 1436fc02256fSLawrence Mitchell leafVote[p].rank = rank; 1437fc02256fSLawrence Mitchell leafVote[p].index = p; 1438f5bf2dbfSMichael Lange } 1439f5bf2dbfSMichael Lange for (p = 0; p < nroots; p++) { 14401627f6ccSMichael Lange /* Root must not participate in the reduction, flag so that MAXLOC does not use */ 1441fc02256fSLawrence Mitchell rootVote[p].vote = -3; 1442fc02256fSLawrence Mitchell rootVote[p].rank = -3; 1443fc02256fSLawrence Mitchell rootVote[p].index = -3; 1444f5bf2dbfSMichael Lange } 1445ffc4695bSBarry Smith ierr = MPI_Type_contiguous(3, MPIU_INT, &datatype);CHKERRMPI(ierr); 1446ffc4695bSBarry Smith ierr = MPI_Type_commit(&datatype);CHKERRMPI(ierr); 1447ffc4695bSBarry Smith ierr = MPI_Op_create(&MaxLocCarry, 1, &op);CHKERRMPI(ierr); 1448fc02256fSLawrence Mitchell ierr = PetscSFReduceBegin(migrationSF, datatype, leafVote, rootVote, op);CHKERRQ(ierr); 1449fc02256fSLawrence Mitchell ierr = PetscSFReduceEnd(migrationSF, datatype, leafVote, rootVote, op);CHKERRQ(ierr); 1450ffc4695bSBarry Smith ierr = MPI_Op_free(&op);CHKERRMPI(ierr); 1451ffc4695bSBarry Smith ierr = MPI_Type_free(&datatype);CHKERRMPI(ierr); 1452c091126eSLawrence Mitchell for (p = 0; p < nroots; p++) { 1453fc02256fSLawrence Mitchell rootNodes[p].rank = rootVote[p].rank; 1454fc02256fSLawrence Mitchell rootNodes[p].index = rootVote[p].index; 1455c091126eSLawrence Mitchell } 1456fc02256fSLawrence Mitchell ierr = PetscFree(leafVote);CHKERRQ(ierr); 1457fc02256fSLawrence Mitchell ierr = PetscFree(rootVote);CHKERRQ(ierr); 1458f5bf2dbfSMichael Lange } else { 1459f5bf2dbfSMichael Lange for (p = 0; p < nroots; p++) { 1460f5bf2dbfSMichael Lange rootNodes[p].index = -1; 1461f5bf2dbfSMichael Lange rootNodes[p].rank = rank; 1462fc02256fSLawrence Mitchell } 1463f5bf2dbfSMichael Lange for (p = 0; p < nleaves; p++) { 1464f5bf2dbfSMichael Lange /* Write new local id into old location */ 1465f5bf2dbfSMichael Lange if (roots[p].rank == rank) { 14666462276dSToby Isaac rootNodes[roots[p].index].index = leaves ? leaves[p] : p; 1467f5bf2dbfSMichael Lange } 1468f5bf2dbfSMichael Lange } 1469f5bf2dbfSMichael Lange } 1470ad227feaSJunchao Zhang ierr = PetscSFBcastBegin(migrationSF, MPIU_2INT, rootNodes, leafNodes,MPI_REPLACE);CHKERRQ(ierr); 1471ad227feaSJunchao Zhang ierr = PetscSFBcastEnd(migrationSF, MPIU_2INT, rootNodes, leafNodes,MPI_REPLACE);CHKERRQ(ierr); 1472f5bf2dbfSMichael Lange 147323193802SMatthew G. Knepley for (npointLeaves = 0, p = 0; p < nleaves; p++) { 1474b0e1264bSMatthew G. Knepley if (leafNodes[p].rank != rank) npointLeaves++; 147523193802SMatthew G. Knepley } 14761627f6ccSMichael Lange ierr = PetscMalloc1(npointLeaves, &pointLocal);CHKERRQ(ierr); 14771627f6ccSMichael Lange ierr = PetscMalloc1(npointLeaves, &pointRemote);CHKERRQ(ierr); 1478f5bf2dbfSMichael Lange for (idx = 0, p = 0; p < nleaves; p++) { 1479b0e1264bSMatthew G. Knepley if (leafNodes[p].rank != rank) { 14803618482eSVaclav Hapla /* Note that pointLocal is automatically sorted as it is sublist of 0, ..., nleaves-1 */ 1481f5bf2dbfSMichael Lange pointLocal[idx] = p; 1482f5bf2dbfSMichael Lange pointRemote[idx] = leafNodes[p]; 1483f5bf2dbfSMichael Lange idx++; 1484f5bf2dbfSMichael Lange } 1485f5bf2dbfSMichael Lange } 148623193802SMatthew G. Knepley if (shift) { 148723193802SMatthew G. Knepley ierr = VecRestoreArrayRead(shifts, &shift);CHKERRQ(ierr); 148823193802SMatthew G. Knepley ierr = VecDestroy(&shifts);CHKERRQ(ierr); 148923193802SMatthew G. Knepley } 149023193802SMatthew G. Knepley if (shiftDebug) {ierr = PetscSynchronizedFlush(PetscObjectComm((PetscObject) dm), PETSC_STDOUT);CHKERRQ(ierr);} 1491f5bf2dbfSMichael Lange ierr = PetscSFCreate(PetscObjectComm((PetscObject) dm), pointSF);CHKERRQ(ierr); 14921627f6ccSMichael Lange ierr = PetscSFSetFromOptions(*pointSF);CHKERRQ(ierr); 1493f5bf2dbfSMichael Lange ierr = PetscSFSetGraph(*pointSF, nleaves, npointLeaves, pointLocal, PETSC_OWN_POINTER, pointRemote, PETSC_OWN_POINTER);CHKERRQ(ierr); 1494f5bf2dbfSMichael Lange ierr = PetscFree2(rootNodes, leafNodes);CHKERRQ(ierr); 149530b0ce1bSStefano Zampini ierr = PetscLogEventEnd(DMPLEX_CreatePointSF,dm,0,0,0);CHKERRQ(ierr); 1496f5bf2dbfSMichael Lange PetscFunctionReturn(0); 1497f5bf2dbfSMichael Lange } 1498f5bf2dbfSMichael Lange 149915078cd4SMichael Lange /*@C 150015078cd4SMichael Lange DMPlexMigrate - Migrates internal DM data over the supplied star forest 150115078cd4SMichael Lange 1502d083f849SBarry Smith Collective on dm 150383655b49SVáclav Hapla 1504064ec1f3Sprj- Input Parameters: 150515078cd4SMichael Lange + dm - The source DMPlex object 1506d8d19677SJose E. Roman - sf - The star forest communication context describing the migration pattern 150715078cd4SMichael Lange 150815078cd4SMichael Lange Output Parameter: 1509d8d19677SJose E. Roman . targetDM - The target DMPlex object 151015078cd4SMichael Lange 1511b9f40539SMichael Lange Level: intermediate 151215078cd4SMichael Lange 151315078cd4SMichael Lange .seealso: DMPlexDistribute(), DMPlexDistributeOverlap() 151415078cd4SMichael Lange @*/ 1515b9f40539SMichael Lange PetscErrorCode DMPlexMigrate(DM dm, PetscSF sf, DM targetDM) 151615078cd4SMichael Lange { 1517b9f40539SMichael Lange MPI_Comm comm; 1518cc1750acSStefano Zampini PetscInt dim, cdim, nroots; 1519b9f40539SMichael Lange PetscSF sfPoint; 152015078cd4SMichael Lange ISLocalToGlobalMapping ltogMigration; 1521ac04eaf7SToby Isaac ISLocalToGlobalMapping ltogOriginal = NULL; 1522b9f40539SMichael Lange PetscBool flg; 152315078cd4SMichael Lange PetscErrorCode ierr; 152415078cd4SMichael Lange 152515078cd4SMichael Lange PetscFunctionBegin; 152615078cd4SMichael Lange PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 15271b858b30SMichael Lange ierr = PetscLogEventBegin(DMPLEX_Migrate, dm, 0, 0, 0);CHKERRQ(ierr); 1528b9f40539SMichael Lange ierr = PetscObjectGetComm((PetscObject) dm, &comm);CHKERRQ(ierr); 152915078cd4SMichael Lange ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr); 153015078cd4SMichael Lange ierr = DMSetDimension(targetDM, dim);CHKERRQ(ierr); 1531cc1750acSStefano Zampini ierr = DMGetCoordinateDim(dm, &cdim);CHKERRQ(ierr); 1532cc1750acSStefano Zampini ierr = DMSetCoordinateDim(targetDM, cdim);CHKERRQ(ierr); 153315078cd4SMichael Lange 1534bfb0467fSMichael Lange /* Check for a one-to-all distribution pattern */ 1535b9f40539SMichael Lange ierr = DMGetPointSF(dm, &sfPoint);CHKERRQ(ierr); 1536b9f40539SMichael Lange ierr = PetscSFGetGraph(sfPoint, &nroots, NULL, NULL, NULL);CHKERRQ(ierr); 1537bfb0467fSMichael Lange if (nroots >= 0) { 1538b9f40539SMichael Lange IS isOriginal; 1539ac04eaf7SToby Isaac PetscInt n, size, nleaves; 1540ac04eaf7SToby Isaac PetscInt *numbering_orig, *numbering_new; 1541367003a6SStefano Zampini 1542b9f40539SMichael Lange /* Get the original point numbering */ 1543b9f40539SMichael Lange ierr = DMPlexCreatePointNumbering(dm, &isOriginal);CHKERRQ(ierr); 1544b9f40539SMichael Lange ierr = ISLocalToGlobalMappingCreateIS(isOriginal, <ogOriginal);CHKERRQ(ierr); 1545b9f40539SMichael Lange ierr = ISLocalToGlobalMappingGetSize(ltogOriginal, &size);CHKERRQ(ierr); 1546b9f40539SMichael Lange ierr = ISLocalToGlobalMappingGetBlockIndices(ltogOriginal, (const PetscInt**)&numbering_orig);CHKERRQ(ierr); 1547b9f40539SMichael Lange /* Convert to positive global numbers */ 1548b9f40539SMichael Lange for (n=0; n<size; n++) {if (numbering_orig[n] < 0) numbering_orig[n] = -(numbering_orig[n]+1);} 1549b9f40539SMichael Lange /* Derive the new local-to-global mapping from the old one */ 1550b9f40539SMichael Lange ierr = PetscSFGetGraph(sf, NULL, &nleaves, NULL, NULL);CHKERRQ(ierr); 1551b9f40539SMichael Lange ierr = PetscMalloc1(nleaves, &numbering_new);CHKERRQ(ierr); 1552ad227feaSJunchao Zhang ierr = PetscSFBcastBegin(sf, MPIU_INT, numbering_orig, numbering_new,MPI_REPLACE);CHKERRQ(ierr); 1553ad227feaSJunchao Zhang ierr = PetscSFBcastEnd(sf, MPIU_INT, numbering_orig, numbering_new,MPI_REPLACE);CHKERRQ(ierr); 15546e0288c8SStefano Zampini ierr = ISLocalToGlobalMappingCreate(comm, 1, nleaves, numbering_new, PETSC_OWN_POINTER, <ogMigration);CHKERRQ(ierr); 1555b9f40539SMichael Lange ierr = ISLocalToGlobalMappingRestoreIndices(ltogOriginal, (const PetscInt**)&numbering_orig);CHKERRQ(ierr); 1556b9f40539SMichael Lange ierr = ISDestroy(&isOriginal);CHKERRQ(ierr); 155715078cd4SMichael Lange } else { 1558bfb0467fSMichael Lange /* One-to-all distribution pattern: We can derive LToG from SF */ 155915078cd4SMichael Lange ierr = ISLocalToGlobalMappingCreateSF(sf, 0, <ogMigration);CHKERRQ(ierr); 156015078cd4SMichael Lange } 1561c5929fdfSBarry Smith ierr = PetscOptionsHasName(((PetscObject) dm)->options,((PetscObject) dm)->prefix, "-partition_view", &flg);CHKERRQ(ierr); 1562b9f40539SMichael Lange if (flg) { 1563b9f40539SMichael Lange ierr = PetscPrintf(comm, "Point renumbering for DM migration:\n");CHKERRQ(ierr); 1564b9f40539SMichael Lange ierr = ISLocalToGlobalMappingView(ltogMigration, NULL);CHKERRQ(ierr); 1565b9f40539SMichael Lange } 156615078cd4SMichael Lange /* Migrate DM data to target DM */ 1567ac04eaf7SToby Isaac ierr = DMPlexDistributeCones(dm, sf, ltogOriginal, ltogMigration, targetDM);CHKERRQ(ierr); 156815078cd4SMichael Lange ierr = DMPlexDistributeLabels(dm, sf, targetDM);CHKERRQ(ierr); 15690dc1530dSSander Arens ierr = DMPlexDistributeCoordinates(dm, sf, targetDM);CHKERRQ(ierr); 157008633170SToby Isaac ierr = DMPlexDistributeSetupTree(dm, sf, ltogOriginal, ltogMigration, targetDM);CHKERRQ(ierr); 1571ac04eaf7SToby Isaac ierr = ISLocalToGlobalMappingDestroy(<ogOriginal);CHKERRQ(ierr); 1572302440fdSBarry Smith ierr = ISLocalToGlobalMappingDestroy(<ogMigration);CHKERRQ(ierr); 15731b858b30SMichael Lange ierr = PetscLogEventEnd(DMPLEX_Migrate, dm, 0, 0, 0);CHKERRQ(ierr); 157415078cd4SMichael Lange PetscFunctionReturn(0); 157515078cd4SMichael Lange } 157615078cd4SMichael Lange 15773b8f15a2SMatthew G. Knepley /*@C 157870034214SMatthew G. Knepley DMPlexDistribute - Distributes the mesh and any associated sections. 157970034214SMatthew G. Knepley 1580d083f849SBarry Smith Collective on dm 158170034214SMatthew G. Knepley 1582064ec1f3Sprj- Input Parameters: 158370034214SMatthew G. Knepley + dm - The original DMPlex object 158470034214SMatthew G. Knepley - overlap - The overlap of partitions, 0 is the default 158570034214SMatthew G. Knepley 1586064ec1f3Sprj- Output Parameters: 1587f4ae5380SJed Brown + sf - The PetscSF used for point distribution, or NULL if not needed 1588f4ae5380SJed Brown - dmParallel - The distributed DMPlex object 158970034214SMatthew G. Knepley 1590f4ae5380SJed Brown Note: If the mesh was not distributed, the output dmParallel will be NULL. 159170034214SMatthew G. Knepley 1592b0441da4SMatthew G. Knepley The user can control the definition of adjacency for the mesh using DMSetAdjacency(). They should choose the combination appropriate for the function 159370034214SMatthew G. Knepley representation on the mesh. 159470034214SMatthew G. Knepley 159570034214SMatthew G. Knepley Level: intermediate 159670034214SMatthew G. Knepley 1597cb54e036SVaclav Hapla .seealso: DMPlexCreate(), DMSetAdjacency(), DMPlexGetOverlap() 159870034214SMatthew G. Knepley @*/ 159980cf41d5SMatthew G. Knepley PetscErrorCode DMPlexDistribute(DM dm, PetscInt overlap, PetscSF *sf, DM *dmParallel) 160070034214SMatthew G. Knepley { 160170034214SMatthew G. Knepley MPI_Comm comm; 160215078cd4SMichael Lange PetscPartitioner partitioner; 1603f8987ae8SMichael Lange IS cellPart; 1604f8987ae8SMichael Lange PetscSection cellPartSection; 1605cf86098cSMatthew G. Knepley DM dmCoord; 1606f8987ae8SMichael Lange DMLabel lblPartition, lblMigration; 1607874ddda9SLisandro Dalcin PetscSF sfMigration, sfStratified, sfPoint; 160898ba2d7fSLawrence Mitchell PetscBool flg, balance; 1609874ddda9SLisandro Dalcin PetscMPIInt rank, size; 161070034214SMatthew G. Knepley PetscErrorCode ierr; 161170034214SMatthew G. Knepley 161270034214SMatthew G. Knepley PetscFunctionBegin; 161370034214SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 1614d5c515a1SMatthew G. Knepley PetscValidLogicalCollectiveInt(dm, overlap, 2); 1615d5c515a1SMatthew G. Knepley if (sf) PetscValidPointer(sf,3); 1616d5c515a1SMatthew G. Knepley PetscValidPointer(dmParallel,4); 161770034214SMatthew G. Knepley 16180c86c063SLisandro Dalcin if (sf) *sf = NULL; 16190c86c063SLisandro Dalcin *dmParallel = NULL; 162070034214SMatthew G. Knepley ierr = PetscObjectGetComm((PetscObject)dm,&comm);CHKERRQ(ierr); 1621ffc4695bSBarry Smith ierr = MPI_Comm_rank(comm, &rank);CHKERRMPI(ierr); 1622ffc4695bSBarry Smith ierr = MPI_Comm_size(comm, &size);CHKERRMPI(ierr); 16230c86c063SLisandro Dalcin if (size == 1) PetscFunctionReturn(0); 162470034214SMatthew G. Knepley 16250c86c063SLisandro Dalcin ierr = PetscLogEventBegin(DMPLEX_Distribute,dm,0,0,0);CHKERRQ(ierr); 162615078cd4SMichael Lange /* Create cell partition */ 162767eb269bSLisandro Dalcin ierr = PetscLogEventBegin(DMPLEX_Partition,dm,0,0,0);CHKERRQ(ierr); 162877623264SMatthew G. Knepley ierr = PetscSectionCreate(comm, &cellPartSection);CHKERRQ(ierr); 162915078cd4SMichael Lange ierr = DMPlexGetPartitioner(dm, &partitioner);CHKERRQ(ierr); 16303c41b853SStefano Zampini ierr = PetscPartitionerDMPlexPartition(partitioner, dm, NULL, cellPartSection, &cellPart);CHKERRQ(ierr); 163130b0ce1bSStefano Zampini ierr = PetscLogEventBegin(DMPLEX_PartSelf,dm,0,0,0);CHKERRQ(ierr); 1632f8987ae8SMichael Lange { 1633f8987ae8SMichael Lange /* Convert partition to DMLabel */ 1634825f8a23SLisandro Dalcin IS is; 1635825f8a23SLisandro Dalcin PetscHSetI ht; 1636f8987ae8SMichael Lange const PetscInt *points; 16378e330a33SStefano Zampini PetscInt *iranks; 16388e330a33SStefano Zampini PetscInt pStart, pEnd, proc, npoints, poff = 0, nranks; 1639825f8a23SLisandro Dalcin 1640d67d17b1SMatthew G. Knepley ierr = DMLabelCreate(PETSC_COMM_SELF, "Point Partition", &lblPartition);CHKERRQ(ierr); 1641825f8a23SLisandro Dalcin /* Preallocate strata */ 1642825f8a23SLisandro Dalcin ierr = PetscHSetICreate(&ht);CHKERRQ(ierr); 1643825f8a23SLisandro Dalcin ierr = PetscSectionGetChart(cellPartSection, &pStart, &pEnd);CHKERRQ(ierr); 1644825f8a23SLisandro Dalcin for (proc = pStart; proc < pEnd; proc++) { 1645825f8a23SLisandro Dalcin ierr = PetscSectionGetDof(cellPartSection, proc, &npoints);CHKERRQ(ierr); 1646825f8a23SLisandro Dalcin if (npoints) {ierr = PetscHSetIAdd(ht, proc);CHKERRQ(ierr);} 1647825f8a23SLisandro Dalcin } 1648825f8a23SLisandro Dalcin ierr = PetscHSetIGetSize(ht, &nranks);CHKERRQ(ierr); 1649825f8a23SLisandro Dalcin ierr = PetscMalloc1(nranks, &iranks);CHKERRQ(ierr); 1650825f8a23SLisandro Dalcin ierr = PetscHSetIGetElems(ht, &poff, iranks);CHKERRQ(ierr); 1651825f8a23SLisandro Dalcin ierr = PetscHSetIDestroy(&ht);CHKERRQ(ierr); 1652825f8a23SLisandro Dalcin ierr = DMLabelAddStrata(lblPartition, nranks, iranks);CHKERRQ(ierr); 1653825f8a23SLisandro Dalcin ierr = PetscFree(iranks);CHKERRQ(ierr); 1654825f8a23SLisandro Dalcin /* Inline DMPlexPartitionLabelClosure() */ 1655f8987ae8SMichael Lange ierr = ISGetIndices(cellPart, &points);CHKERRQ(ierr); 1656f8987ae8SMichael Lange ierr = PetscSectionGetChart(cellPartSection, &pStart, &pEnd);CHKERRQ(ierr); 1657f8987ae8SMichael Lange for (proc = pStart; proc < pEnd; proc++) { 1658f8987ae8SMichael Lange ierr = PetscSectionGetDof(cellPartSection, proc, &npoints);CHKERRQ(ierr); 1659825f8a23SLisandro Dalcin if (!npoints) continue; 1660825f8a23SLisandro Dalcin ierr = PetscSectionGetOffset(cellPartSection, proc, &poff);CHKERRQ(ierr); 16618e330a33SStefano Zampini ierr = DMPlexClosurePoints_Private(dm, npoints, points+poff, &is);CHKERRQ(ierr); 1662825f8a23SLisandro Dalcin ierr = DMLabelSetStratumIS(lblPartition, proc, is);CHKERRQ(ierr); 1663825f8a23SLisandro Dalcin ierr = ISDestroy(&is);CHKERRQ(ierr); 1664f8987ae8SMichael Lange } 1665f8987ae8SMichael Lange ierr = ISRestoreIndices(cellPart, &points);CHKERRQ(ierr); 1666f8987ae8SMichael Lange } 166730b0ce1bSStefano Zampini ierr = PetscLogEventEnd(DMPLEX_PartSelf,dm,0,0,0);CHKERRQ(ierr); 16686e203dd9SStefano Zampini 1669d67d17b1SMatthew G. Knepley ierr = DMLabelCreate(PETSC_COMM_SELF, "Point migration", &lblMigration);CHKERRQ(ierr); 1670874ddda9SLisandro Dalcin ierr = DMPlexPartitionLabelInvert(dm, lblPartition, NULL, lblMigration);CHKERRQ(ierr); 1671302440fdSBarry Smith ierr = DMPlexPartitionLabelCreateSF(dm, lblMigration, &sfMigration);CHKERRQ(ierr); 167243f7d02bSMichael Lange ierr = DMPlexStratifyMigrationSF(dm, sfMigration, &sfStratified);CHKERRQ(ierr); 167343f7d02bSMichael Lange ierr = PetscSFDestroy(&sfMigration);CHKERRQ(ierr); 167443f7d02bSMichael Lange sfMigration = sfStratified; 167530b0ce1bSStefano Zampini ierr = PetscSFSetUp(sfMigration);CHKERRQ(ierr); 167667eb269bSLisandro Dalcin ierr = PetscLogEventEnd(DMPLEX_Partition,dm,0,0,0);CHKERRQ(ierr); 1677c5929fdfSBarry Smith ierr = PetscOptionsHasName(((PetscObject) dm)->options,((PetscObject) dm)->prefix, "-partition_view", &flg);CHKERRQ(ierr); 167870034214SMatthew G. Knepley if (flg) { 1679a8c5bd36SStefano Zampini ierr = DMLabelView(lblPartition, PETSC_VIEWER_STDOUT_(comm));CHKERRQ(ierr); 1680a8c5bd36SStefano Zampini ierr = PetscSFView(sfMigration, PETSC_VIEWER_STDOUT_(comm));CHKERRQ(ierr); 168170034214SMatthew G. Knepley } 1682f8987ae8SMichael Lange 168315078cd4SMichael Lange /* Create non-overlapping parallel DM and migrate internal data */ 168470034214SMatthew G. Knepley ierr = DMPlexCreate(comm, dmParallel);CHKERRQ(ierr); 168570034214SMatthew G. Knepley ierr = PetscObjectSetName((PetscObject) *dmParallel, "Parallel Mesh");CHKERRQ(ierr); 1686b9f40539SMichael Lange ierr = DMPlexMigrate(dm, sfMigration, *dmParallel);CHKERRQ(ierr); 168770034214SMatthew G. Knepley 1688a157612eSMichael Lange /* Build the point SF without overlap */ 168998ba2d7fSLawrence Mitchell ierr = DMPlexGetPartitionBalance(dm, &balance);CHKERRQ(ierr); 169098ba2d7fSLawrence Mitchell ierr = DMPlexSetPartitionBalance(*dmParallel, balance);CHKERRQ(ierr); 16911627f6ccSMichael Lange ierr = DMPlexCreatePointSF(*dmParallel, sfMigration, PETSC_TRUE, &sfPoint);CHKERRQ(ierr); 1692f5bf2dbfSMichael Lange ierr = DMSetPointSF(*dmParallel, sfPoint);CHKERRQ(ierr); 1693cf86098cSMatthew G. Knepley ierr = DMGetCoordinateDM(*dmParallel, &dmCoord);CHKERRQ(ierr); 1694cf86098cSMatthew G. Knepley if (dmCoord) {ierr = DMSetPointSF(dmCoord, sfPoint);CHKERRQ(ierr);} 1695a8c5bd36SStefano Zampini if (flg) {ierr = PetscSFView(sfPoint, NULL);CHKERRQ(ierr);} 169670034214SMatthew G. Knepley 1697a157612eSMichael Lange if (overlap > 0) { 169815078cd4SMichael Lange DM dmOverlap; 169957f290daSMatthew G. Knepley PetscInt nroots, nleaves, noldleaves, l; 170057f290daSMatthew G. Knepley const PetscInt *oldLeaves; 170157f290daSMatthew G. Knepley PetscSFNode *newRemote, *permRemote; 170215078cd4SMichael Lange const PetscSFNode *oldRemote; 170315078cd4SMichael Lange PetscSF sfOverlap, sfOverlapPoint; 1704524e35f8SStefano Zampini 1705a157612eSMichael Lange /* Add the partition overlap to the distributed DM */ 1706b9f40539SMichael Lange ierr = DMPlexDistributeOverlap(*dmParallel, overlap, &sfOverlap, &dmOverlap);CHKERRQ(ierr); 1707a157612eSMichael Lange ierr = DMDestroy(dmParallel);CHKERRQ(ierr); 1708a157612eSMichael Lange *dmParallel = dmOverlap; 1709c389ea9fSToby Isaac if (flg) { 17103d822a50SMichael Lange ierr = PetscPrintf(comm, "Overlap Migration SF:\n");CHKERRQ(ierr); 171115078cd4SMichael Lange ierr = PetscSFView(sfOverlap, NULL);CHKERRQ(ierr); 1712c389ea9fSToby Isaac } 171343331d4aSMichael Lange 1714f8987ae8SMichael Lange /* Re-map the migration SF to establish the full migration pattern */ 171557f290daSMatthew G. Knepley ierr = PetscSFGetGraph(sfMigration, &nroots, &noldleaves, &oldLeaves, &oldRemote);CHKERRQ(ierr); 171615078cd4SMichael Lange ierr = PetscSFGetGraph(sfOverlap, NULL, &nleaves, NULL, NULL);CHKERRQ(ierr); 171743331d4aSMichael Lange ierr = PetscMalloc1(nleaves, &newRemote);CHKERRQ(ierr); 171857f290daSMatthew G. Knepley /* oldRemote: original root point mapping to original leaf point 171957f290daSMatthew G. Knepley newRemote: original leaf point mapping to overlapped leaf point */ 172057f290daSMatthew G. Knepley if (oldLeaves) { 172173e69a6aSMatthew G. Knepley /* After stratification, the migration remotes may not be in root (canonical) order, so we reorder using the leaf numbering */ 172273e69a6aSMatthew G. Knepley ierr = PetscMalloc1(noldleaves, &permRemote);CHKERRQ(ierr); 172357f290daSMatthew G. Knepley for (l = 0; l < noldleaves; ++l) permRemote[oldLeaves[l]] = oldRemote[l]; 172457f290daSMatthew G. Knepley oldRemote = permRemote; 172557f290daSMatthew G. Knepley } 1726ad227feaSJunchao Zhang ierr = PetscSFBcastBegin(sfOverlap, MPIU_2INT, oldRemote, newRemote,MPI_REPLACE);CHKERRQ(ierr); 1727ad227feaSJunchao Zhang ierr = PetscSFBcastEnd(sfOverlap, MPIU_2INT, oldRemote, newRemote,MPI_REPLACE);CHKERRQ(ierr); 172857f290daSMatthew G. Knepley if (oldLeaves) {ierr = PetscFree(oldRemote);CHKERRQ(ierr);} 172915078cd4SMichael Lange ierr = PetscSFCreate(comm, &sfOverlapPoint);CHKERRQ(ierr); 173015078cd4SMichael Lange ierr = PetscSFSetGraph(sfOverlapPoint, nroots, nleaves, NULL, PETSC_OWN_POINTER, newRemote, PETSC_OWN_POINTER);CHKERRQ(ierr); 173115078cd4SMichael Lange ierr = PetscSFDestroy(&sfOverlap);CHKERRQ(ierr); 1732f8987ae8SMichael Lange ierr = PetscSFDestroy(&sfMigration);CHKERRQ(ierr); 173315078cd4SMichael Lange sfMigration = sfOverlapPoint; 1734c389ea9fSToby Isaac } 1735bf5244c7SMatthew G. Knepley /* Cleanup Partition */ 1736f8987ae8SMichael Lange ierr = DMLabelDestroy(&lblPartition);CHKERRQ(ierr); 1737f8987ae8SMichael Lange ierr = DMLabelDestroy(&lblMigration);CHKERRQ(ierr); 17384eca1733SMichael Lange ierr = PetscSectionDestroy(&cellPartSection);CHKERRQ(ierr); 17394eca1733SMichael Lange ierr = ISDestroy(&cellPart);CHKERRQ(ierr); 174045480ffeSMatthew G. Knepley /* Copy discretization */ 174145480ffeSMatthew G. Knepley ierr = DMCopyDisc(dm, *dmParallel);CHKERRQ(ierr); 174266fe0bfeSMatthew G. Knepley /* Create sfNatural */ 174366fe0bfeSMatthew G. Knepley if (dm->useNatural) { 174466fe0bfeSMatthew G. Knepley PetscSection section; 174566fe0bfeSMatthew G. Knepley 174692fd8e1eSJed Brown ierr = DMGetLocalSection(dm, §ion);CHKERRQ(ierr); 17470c1f158bSMatthew G. Knepley ierr = DMPlexCreateGlobalToNaturalSF(*dmParallel, section, sfMigration, &(*dmParallel)->sfNatural);CHKERRQ(ierr); 17480e663481SBlaise Bourdin ierr = DMSetUseNatural(*dmParallel, PETSC_TRUE);CHKERRQ(ierr); 174966fe0bfeSMatthew G. Knepley } 1750*e600fa54SMatthew G. Knepley ierr = DMPlexCopy_Internal(dm, PETSC_TRUE, *dmParallel);CHKERRQ(ierr); 1751721cbd76SMatthew G. Knepley /* Cleanup */ 1752f8987ae8SMichael Lange if (sf) {*sf = sfMigration;} 1753f8987ae8SMichael Lange else {ierr = PetscSFDestroy(&sfMigration);CHKERRQ(ierr);} 1754f5bf2dbfSMichael Lange ierr = PetscSFDestroy(&sfPoint);CHKERRQ(ierr); 175570034214SMatthew G. Knepley ierr = PetscLogEventEnd(DMPLEX_Distribute,dm,0,0,0);CHKERRQ(ierr); 175670034214SMatthew G. Knepley PetscFunctionReturn(0); 175770034214SMatthew G. Knepley } 1758a157612eSMichael Lange 1759a157612eSMichael Lange /*@C 176024cc2ca5SMatthew G. Knepley DMPlexDistributeOverlap - Add partition overlap to a distributed non-overlapping DM. 1761a157612eSMichael Lange 1762d083f849SBarry Smith Collective on dm 1763a157612eSMichael Lange 1764064ec1f3Sprj- Input Parameters: 1765064ec1f3Sprj- + dm - The non-overlapping distributed DMPlex object 176657fe9a49SVaclav Hapla - overlap - The overlap of partitions (the same on all ranks) 1767a157612eSMichael Lange 1768064ec1f3Sprj- Output Parameters: 1769a157612eSMichael Lange + sf - The PetscSF used for point distribution 1770a157612eSMichael Lange - dmOverlap - The overlapping distributed DMPlex object, or NULL 1771a157612eSMichael Lange 1772dccdeccaSVaclav Hapla Notes: 1773dccdeccaSVaclav Hapla If the mesh was not distributed, the return value is NULL. 1774a157612eSMichael Lange 1775b0441da4SMatthew G. Knepley The user can control the definition of adjacency for the mesh using DMSetAdjacency(). They should choose the combination appropriate for the function 1776a157612eSMichael Lange representation on the mesh. 1777a157612eSMichael Lange 1778dccdeccaSVaclav Hapla Level: advanced 1779a157612eSMichael Lange 1780cb54e036SVaclav Hapla .seealso: DMPlexCreate(), DMSetAdjacency(), DMPlexDistribute(), DMPlexCreateOverlapLabel(), DMPlexGetOverlap() 1781a157612eSMichael Lange @*/ 1782b9f40539SMichael Lange PetscErrorCode DMPlexDistributeOverlap(DM dm, PetscInt overlap, PetscSF *sf, DM *dmOverlap) 1783a157612eSMichael Lange { 1784a157612eSMichael Lange MPI_Comm comm; 17853567eaeeSMatthew G. Knepley PetscMPIInt size, rank; 1786a157612eSMichael Lange PetscSection rootSection, leafSection; 1787a157612eSMichael Lange IS rootrank, leafrank; 1788cf86098cSMatthew G. Knepley DM dmCoord; 1789a9f1d5b2SMichael Lange DMLabel lblOverlap; 1790f5bf2dbfSMichael Lange PetscSF sfOverlap, sfStratified, sfPoint; 1791a157612eSMichael Lange PetscErrorCode ierr; 1792a157612eSMichael Lange 1793a157612eSMichael Lange PetscFunctionBegin; 1794a157612eSMichael Lange PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 179557fe9a49SVaclav Hapla PetscValidLogicalCollectiveInt(dm, overlap, 2); 1796a157612eSMichael Lange if (sf) PetscValidPointer(sf, 3); 1797a157612eSMichael Lange PetscValidPointer(dmOverlap, 4); 1798a157612eSMichael Lange 17990c86c063SLisandro Dalcin if (sf) *sf = NULL; 18000c86c063SLisandro Dalcin *dmOverlap = NULL; 1801a157612eSMichael Lange ierr = PetscObjectGetComm((PetscObject)dm,&comm);CHKERRQ(ierr); 1802ffc4695bSBarry Smith ierr = MPI_Comm_size(comm, &size);CHKERRMPI(ierr); 1803ffc4695bSBarry Smith ierr = MPI_Comm_rank(comm, &rank);CHKERRMPI(ierr); 18040c86c063SLisandro Dalcin if (size == 1) PetscFunctionReturn(0); 1805a157612eSMichael Lange 18060c86c063SLisandro Dalcin ierr = PetscLogEventBegin(DMPLEX_DistributeOverlap, dm, 0, 0, 0);CHKERRQ(ierr); 1807a157612eSMichael Lange /* Compute point overlap with neighbouring processes on the distributed DM */ 180867eb269bSLisandro Dalcin ierr = PetscLogEventBegin(DMPLEX_Partition,dm,0,0,0);CHKERRQ(ierr); 1809a157612eSMichael Lange ierr = PetscSectionCreate(comm, &rootSection);CHKERRQ(ierr); 1810a157612eSMichael Lange ierr = PetscSectionCreate(comm, &leafSection);CHKERRQ(ierr); 1811a157612eSMichael Lange ierr = DMPlexDistributeOwnership(dm, rootSection, &rootrank, leafSection, &leafrank);CHKERRQ(ierr); 1812dccdeccaSVaclav Hapla ierr = DMPlexCreateOverlapLabel(dm, overlap, rootSection, rootrank, leafSection, leafrank, &lblOverlap);CHKERRQ(ierr); 1813a9f1d5b2SMichael Lange /* Convert overlap label to stratified migration SF */ 1814a9f1d5b2SMichael Lange ierr = DMPlexPartitionLabelCreateSF(dm, lblOverlap, &sfOverlap);CHKERRQ(ierr); 1815a9f1d5b2SMichael Lange ierr = DMPlexStratifyMigrationSF(dm, sfOverlap, &sfStratified);CHKERRQ(ierr); 1816a9f1d5b2SMichael Lange ierr = PetscSFDestroy(&sfOverlap);CHKERRQ(ierr); 1817a9f1d5b2SMichael Lange sfOverlap = sfStratified; 1818a9f1d5b2SMichael Lange ierr = PetscObjectSetName((PetscObject) sfOverlap, "Overlap SF");CHKERRQ(ierr); 1819a9f1d5b2SMichael Lange ierr = PetscSFSetFromOptions(sfOverlap);CHKERRQ(ierr); 1820a9f1d5b2SMichael Lange 182115fff7beSMatthew G. Knepley ierr = PetscSectionDestroy(&rootSection);CHKERRQ(ierr); 182215fff7beSMatthew G. Knepley ierr = PetscSectionDestroy(&leafSection);CHKERRQ(ierr); 182315fff7beSMatthew G. Knepley ierr = ISDestroy(&rootrank);CHKERRQ(ierr); 182415fff7beSMatthew G. Knepley ierr = ISDestroy(&leafrank);CHKERRQ(ierr); 182567eb269bSLisandro Dalcin ierr = PetscLogEventEnd(DMPLEX_Partition,dm,0,0,0);CHKERRQ(ierr); 1826a157612eSMichael Lange 1827a157612eSMichael Lange /* Build the overlapping DM */ 1828a157612eSMichael Lange ierr = DMPlexCreate(comm, dmOverlap);CHKERRQ(ierr); 1829a157612eSMichael Lange ierr = PetscObjectSetName((PetscObject) *dmOverlap, "Parallel Mesh");CHKERRQ(ierr); 1830a9f1d5b2SMichael Lange ierr = DMPlexMigrate(dm, sfOverlap, *dmOverlap);CHKERRQ(ierr); 1831cb54e036SVaclav Hapla /* Store the overlap in the new DM */ 1832cb54e036SVaclav Hapla ((DM_Plex*)(*dmOverlap)->data)->overlap = overlap + ((DM_Plex*)dm->data)->overlap; 1833f5bf2dbfSMichael Lange /* Build the new point SF */ 18341627f6ccSMichael Lange ierr = DMPlexCreatePointSF(*dmOverlap, sfOverlap, PETSC_FALSE, &sfPoint);CHKERRQ(ierr); 1835f5bf2dbfSMichael Lange ierr = DMSetPointSF(*dmOverlap, sfPoint);CHKERRQ(ierr); 1836cf86098cSMatthew G. Knepley ierr = DMGetCoordinateDM(*dmOverlap, &dmCoord);CHKERRQ(ierr); 1837cf86098cSMatthew G. Knepley if (dmCoord) {ierr = DMSetPointSF(dmCoord, sfPoint);CHKERRQ(ierr);} 1838f5bf2dbfSMichael Lange ierr = PetscSFDestroy(&sfPoint);CHKERRQ(ierr); 1839a157612eSMichael Lange /* Cleanup overlap partition */ 1840a9f1d5b2SMichael Lange ierr = DMLabelDestroy(&lblOverlap);CHKERRQ(ierr); 1841a9f1d5b2SMichael Lange if (sf) *sf = sfOverlap; 1842a9f1d5b2SMichael Lange else {ierr = PetscSFDestroy(&sfOverlap);CHKERRQ(ierr);} 18431b858b30SMichael Lange ierr = PetscLogEventEnd(DMPLEX_DistributeOverlap, dm, 0, 0, 0);CHKERRQ(ierr); 1844a157612eSMichael Lange PetscFunctionReturn(0); 1845a157612eSMichael Lange } 18466462276dSToby Isaac 1847cb54e036SVaclav Hapla PetscErrorCode DMPlexGetOverlap_Plex(DM dm, PetscInt *overlap) 1848cb54e036SVaclav Hapla { 1849cb54e036SVaclav Hapla DM_Plex *mesh = (DM_Plex*) dm->data; 1850cb54e036SVaclav Hapla 1851cb54e036SVaclav Hapla PetscFunctionBegin; 1852cb54e036SVaclav Hapla *overlap = mesh->overlap; 1853cb54e036SVaclav Hapla PetscFunctionReturn(0); 1854cb54e036SVaclav Hapla } 1855cb54e036SVaclav Hapla 1856cb54e036SVaclav Hapla /*@ 1857cb54e036SVaclav Hapla DMPlexGetOverlap - Get the DMPlex partition overlap. 1858cb54e036SVaclav Hapla 1859cb54e036SVaclav Hapla Not collective 1860cb54e036SVaclav Hapla 1861cb54e036SVaclav Hapla Input Parameter: 1862cb54e036SVaclav Hapla . dm - The DM 1863cb54e036SVaclav Hapla 1864064ec1f3Sprj- Output Parameter: 1865cb54e036SVaclav Hapla . overlap - The overlap of this DM 1866cb54e036SVaclav Hapla 1867cb54e036SVaclav Hapla Level: intermediate 1868cb54e036SVaclav Hapla 1869cb54e036SVaclav Hapla .seealso: DMPlexDistribute(), DMPlexDistributeOverlap(), DMPlexCreateOverlapLabel() 1870cb54e036SVaclav Hapla @*/ 1871cb54e036SVaclav Hapla PetscErrorCode DMPlexGetOverlap(DM dm, PetscInt *overlap) 1872cb54e036SVaclav Hapla { 1873cb54e036SVaclav Hapla PetscErrorCode ierr; 1874cb54e036SVaclav Hapla 1875cb54e036SVaclav Hapla PetscFunctionBegin; 1876cb54e036SVaclav Hapla PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 1877cb54e036SVaclav Hapla ierr = PetscUseMethod(dm,"DMPlexGetOverlap_C",(DM,PetscInt*),(dm,overlap));CHKERRQ(ierr); 1878cb54e036SVaclav Hapla PetscFunctionReturn(0); 1879cb54e036SVaclav Hapla } 1880cb54e036SVaclav Hapla 1881*e600fa54SMatthew G. Knepley PetscErrorCode DMPlexDistributeSetDefault_Plex(DM dm, PetscBool dist) 1882*e600fa54SMatthew G. Knepley { 1883*e600fa54SMatthew G. Knepley DM_Plex *mesh = (DM_Plex *) dm->data; 1884*e600fa54SMatthew G. Knepley 1885*e600fa54SMatthew G. Knepley PetscFunctionBegin; 1886*e600fa54SMatthew G. Knepley mesh->distDefault = dist; 1887*e600fa54SMatthew G. Knepley PetscFunctionReturn(0); 1888*e600fa54SMatthew G. Knepley } 1889*e600fa54SMatthew G. Knepley 1890*e600fa54SMatthew G. Knepley /*@ 1891*e600fa54SMatthew G. Knepley DMPlexDistributeSetDefault - Set flag indicating whether the DM should be distributed by default 1892*e600fa54SMatthew G. Knepley 1893*e600fa54SMatthew G. Knepley Logically collective 1894*e600fa54SMatthew G. Knepley 1895*e600fa54SMatthew G. Knepley Input Parameters: 1896*e600fa54SMatthew G. Knepley + dm - The DM 1897*e600fa54SMatthew G. Knepley - dist - Flag for distribution 1898*e600fa54SMatthew G. Knepley 1899*e600fa54SMatthew G. Knepley Level: intermediate 1900*e600fa54SMatthew G. Knepley 1901*e600fa54SMatthew G. Knepley .seealso: DMDistributeGetDefault(), DMPlexDistribute() 1902*e600fa54SMatthew G. Knepley @*/ 1903*e600fa54SMatthew G. Knepley PetscErrorCode DMPlexDistributeSetDefault(DM dm, PetscBool dist) 1904*e600fa54SMatthew G. Knepley { 1905*e600fa54SMatthew G. Knepley PetscErrorCode ierr; 1906*e600fa54SMatthew G. Knepley 1907*e600fa54SMatthew G. Knepley PetscFunctionBegin; 1908*e600fa54SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 1909*e600fa54SMatthew G. Knepley PetscValidLogicalCollectiveBool(dm, dist, 2); 1910*e600fa54SMatthew G. Knepley ierr = PetscTryMethod(dm,"DMPlexDistributeSetDefault_C",(DM,PetscBool),(dm,dist));CHKERRQ(ierr); 1911*e600fa54SMatthew G. Knepley PetscFunctionReturn(0); 1912*e600fa54SMatthew G. Knepley } 1913*e600fa54SMatthew G. Knepley 1914*e600fa54SMatthew G. Knepley PetscErrorCode DMPlexDistributeGetDefault_Plex(DM dm, PetscBool *dist) 1915*e600fa54SMatthew G. Knepley { 1916*e600fa54SMatthew G. Knepley DM_Plex *mesh = (DM_Plex *) dm->data; 1917*e600fa54SMatthew G. Knepley 1918*e600fa54SMatthew G. Knepley PetscFunctionBegin; 1919*e600fa54SMatthew G. Knepley *dist = mesh->distDefault; 1920*e600fa54SMatthew G. Knepley PetscFunctionReturn(0); 1921*e600fa54SMatthew G. Knepley } 1922*e600fa54SMatthew G. Knepley 1923*e600fa54SMatthew G. Knepley /*@ 1924*e600fa54SMatthew G. Knepley DMPlexDistributeGetDefault - Get flag indicating whether the DM should be distributed by default 1925*e600fa54SMatthew G. Knepley 1926*e600fa54SMatthew G. Knepley Not collective 1927*e600fa54SMatthew G. Knepley 1928*e600fa54SMatthew G. Knepley Input Parameter: 1929*e600fa54SMatthew G. Knepley . dm - The DM 1930*e600fa54SMatthew G. Knepley 1931*e600fa54SMatthew G. Knepley Output Parameter: 1932*e600fa54SMatthew G. Knepley . dist - Flag for distribution 1933*e600fa54SMatthew G. Knepley 1934*e600fa54SMatthew G. Knepley Level: intermediate 1935*e600fa54SMatthew G. Knepley 1936*e600fa54SMatthew G. Knepley .seealso: DMDistributeSetDefault(), DMPlexDistribute() 1937*e600fa54SMatthew G. Knepley @*/ 1938*e600fa54SMatthew G. Knepley PetscErrorCode DMPlexDistributeGetDefault(DM dm, PetscBool *dist) 1939*e600fa54SMatthew G. Knepley { 1940*e600fa54SMatthew G. Knepley PetscErrorCode ierr; 1941*e600fa54SMatthew G. Knepley 1942*e600fa54SMatthew G. Knepley PetscFunctionBegin; 1943*e600fa54SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 1944*e600fa54SMatthew G. Knepley PetscValidBoolPointer(dist, 2); 1945*e600fa54SMatthew G. Knepley ierr = PetscUseMethod(dm,"DMPlexDistributeGetDefault_C",(DM,PetscBool*),(dm,dist));CHKERRQ(ierr); 1946*e600fa54SMatthew G. Knepley PetscFunctionReturn(0); 1947*e600fa54SMatthew G. Knepley } 1948*e600fa54SMatthew G. Knepley 19496462276dSToby Isaac /*@C 19506462276dSToby Isaac DMPlexGetGatherDM - Get a copy of the DMPlex that gathers all points on the 19516462276dSToby Isaac root process of the original's communicator. 19526462276dSToby Isaac 1953d083f849SBarry Smith Collective on dm 195483655b49SVáclav Hapla 1955064ec1f3Sprj- Input Parameter: 19566462276dSToby Isaac . dm - the original DMPlex object 19576462276dSToby Isaac 19586462276dSToby Isaac Output Parameters: 1959a13df41bSStefano Zampini + sf - the PetscSF used for point distribution (optional) 1960a13df41bSStefano Zampini - gatherMesh - the gathered DM object, or NULL 19616462276dSToby Isaac 19626462276dSToby Isaac Level: intermediate 19636462276dSToby Isaac 19646462276dSToby Isaac .seealso: DMPlexDistribute(), DMPlexGetRedundantDM() 19656462276dSToby Isaac @*/ 1966a13df41bSStefano Zampini PetscErrorCode DMPlexGetGatherDM(DM dm, PetscSF *sf, DM *gatherMesh) 19676462276dSToby Isaac { 19686462276dSToby Isaac MPI_Comm comm; 19696462276dSToby Isaac PetscMPIInt size; 19706462276dSToby Isaac PetscPartitioner oldPart, gatherPart; 19716462276dSToby Isaac PetscErrorCode ierr; 19726462276dSToby Isaac 19736462276dSToby Isaac PetscFunctionBegin; 19746462276dSToby Isaac PetscValidHeaderSpecific(dm,DM_CLASSID,1); 1975064a246eSJacob Faibussowitsch PetscValidPointer(gatherMesh,3); 19760c86c063SLisandro Dalcin *gatherMesh = NULL; 1977a13df41bSStefano Zampini if (sf) *sf = NULL; 19786462276dSToby Isaac comm = PetscObjectComm((PetscObject)dm); 1979ffc4695bSBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRMPI(ierr); 19806462276dSToby Isaac if (size == 1) PetscFunctionReturn(0); 19816462276dSToby Isaac ierr = DMPlexGetPartitioner(dm,&oldPart);CHKERRQ(ierr); 19826462276dSToby Isaac ierr = PetscObjectReference((PetscObject)oldPart);CHKERRQ(ierr); 19836462276dSToby Isaac ierr = PetscPartitionerCreate(comm,&gatherPart);CHKERRQ(ierr); 19846462276dSToby Isaac ierr = PetscPartitionerSetType(gatherPart,PETSCPARTITIONERGATHER);CHKERRQ(ierr); 19856462276dSToby Isaac ierr = DMPlexSetPartitioner(dm,gatherPart);CHKERRQ(ierr); 1986a13df41bSStefano Zampini ierr = DMPlexDistribute(dm,0,sf,gatherMesh);CHKERRQ(ierr); 1987a13df41bSStefano Zampini 19886462276dSToby Isaac ierr = DMPlexSetPartitioner(dm,oldPart);CHKERRQ(ierr); 19896462276dSToby Isaac ierr = PetscPartitionerDestroy(&gatherPart);CHKERRQ(ierr); 19906462276dSToby Isaac ierr = PetscPartitionerDestroy(&oldPart);CHKERRQ(ierr); 19916462276dSToby Isaac PetscFunctionReturn(0); 19926462276dSToby Isaac } 19936462276dSToby Isaac 19946462276dSToby Isaac /*@C 19956462276dSToby Isaac DMPlexGetRedundantDM - Get a copy of the DMPlex that is completely copied on each process. 19966462276dSToby Isaac 1997d083f849SBarry Smith Collective on dm 199883655b49SVáclav Hapla 1999064ec1f3Sprj- Input Parameter: 20006462276dSToby Isaac . dm - the original DMPlex object 20016462276dSToby Isaac 20026462276dSToby Isaac Output Parameters: 2003a13df41bSStefano Zampini + sf - the PetscSF used for point distribution (optional) 2004a13df41bSStefano Zampini - redundantMesh - the redundant DM object, or NULL 20056462276dSToby Isaac 20066462276dSToby Isaac Level: intermediate 20076462276dSToby Isaac 20086462276dSToby Isaac .seealso: DMPlexDistribute(), DMPlexGetGatherDM() 20096462276dSToby Isaac @*/ 2010a13df41bSStefano Zampini PetscErrorCode DMPlexGetRedundantDM(DM dm, PetscSF *sf, DM *redundantMesh) 20116462276dSToby Isaac { 20126462276dSToby Isaac MPI_Comm comm; 20136462276dSToby Isaac PetscMPIInt size, rank; 20146462276dSToby Isaac PetscInt pStart, pEnd, p; 20156462276dSToby Isaac PetscInt numPoints = -1; 2016a13df41bSStefano Zampini PetscSF migrationSF, sfPoint, gatherSF; 20176462276dSToby Isaac DM gatherDM, dmCoord; 20186462276dSToby Isaac PetscSFNode *points; 20196462276dSToby Isaac PetscErrorCode ierr; 20206462276dSToby Isaac 20216462276dSToby Isaac PetscFunctionBegin; 20226462276dSToby Isaac PetscValidHeaderSpecific(dm,DM_CLASSID,1); 2023064a246eSJacob Faibussowitsch PetscValidPointer(redundantMesh,3); 20240c86c063SLisandro Dalcin *redundantMesh = NULL; 20256462276dSToby Isaac comm = PetscObjectComm((PetscObject)dm); 2026ffc4695bSBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRMPI(ierr); 202768dbc166SMatthew G. Knepley if (size == 1) { 202868dbc166SMatthew G. Knepley ierr = PetscObjectReference((PetscObject) dm);CHKERRQ(ierr); 202968dbc166SMatthew G. Knepley *redundantMesh = dm; 2030a13df41bSStefano Zampini if (sf) *sf = NULL; 203168dbc166SMatthew G. Knepley PetscFunctionReturn(0); 203268dbc166SMatthew G. Knepley } 2033a13df41bSStefano Zampini ierr = DMPlexGetGatherDM(dm,&gatherSF,&gatherDM);CHKERRQ(ierr); 20346462276dSToby Isaac if (!gatherDM) PetscFunctionReturn(0); 2035ffc4695bSBarry Smith ierr = MPI_Comm_rank(comm,&rank);CHKERRMPI(ierr); 20366462276dSToby Isaac ierr = DMPlexGetChart(gatherDM,&pStart,&pEnd);CHKERRQ(ierr); 20376462276dSToby Isaac numPoints = pEnd - pStart; 2038ffc4695bSBarry Smith ierr = MPI_Bcast(&numPoints,1,MPIU_INT,0,comm);CHKERRMPI(ierr); 20396462276dSToby Isaac ierr = PetscMalloc1(numPoints,&points);CHKERRQ(ierr); 20406462276dSToby Isaac ierr = PetscSFCreate(comm,&migrationSF);CHKERRQ(ierr); 20416462276dSToby Isaac for (p = 0; p < numPoints; p++) { 20426462276dSToby Isaac points[p].index = p; 20436462276dSToby Isaac points[p].rank = 0; 20446462276dSToby Isaac } 20456462276dSToby Isaac ierr = PetscSFSetGraph(migrationSF,pEnd-pStart,numPoints,NULL,PETSC_OWN_POINTER,points,PETSC_OWN_POINTER);CHKERRQ(ierr); 20466462276dSToby Isaac ierr = DMPlexCreate(comm, redundantMesh);CHKERRQ(ierr); 20476462276dSToby Isaac ierr = PetscObjectSetName((PetscObject) *redundantMesh, "Redundant Mesh");CHKERRQ(ierr); 20486462276dSToby Isaac ierr = DMPlexMigrate(gatherDM, migrationSF, *redundantMesh);CHKERRQ(ierr); 20496462276dSToby Isaac ierr = DMPlexCreatePointSF(*redundantMesh, migrationSF, PETSC_FALSE, &sfPoint);CHKERRQ(ierr); 20506462276dSToby Isaac ierr = DMSetPointSF(*redundantMesh, sfPoint);CHKERRQ(ierr); 20516462276dSToby Isaac ierr = DMGetCoordinateDM(*redundantMesh, &dmCoord);CHKERRQ(ierr); 20526462276dSToby Isaac if (dmCoord) {ierr = DMSetPointSF(dmCoord, sfPoint);CHKERRQ(ierr);} 20536462276dSToby Isaac ierr = PetscSFDestroy(&sfPoint);CHKERRQ(ierr); 2054a13df41bSStefano Zampini if (sf) { 2055a13df41bSStefano Zampini PetscSF tsf; 2056a13df41bSStefano Zampini 2057a13df41bSStefano Zampini ierr = PetscSFCompose(gatherSF,migrationSF,&tsf);CHKERRQ(ierr); 2058a13df41bSStefano Zampini ierr = DMPlexStratifyMigrationSF(dm, tsf, sf);CHKERRQ(ierr); 2059a13df41bSStefano Zampini ierr = PetscSFDestroy(&tsf);CHKERRQ(ierr); 2060a13df41bSStefano Zampini } 20616462276dSToby Isaac ierr = PetscSFDestroy(&migrationSF);CHKERRQ(ierr); 2062a13df41bSStefano Zampini ierr = PetscSFDestroy(&gatherSF);CHKERRQ(ierr); 20636462276dSToby Isaac ierr = DMDestroy(&gatherDM);CHKERRQ(ierr); 2064*e600fa54SMatthew G. Knepley ierr = DMCopyDisc(dm, *redundantMesh);CHKERRQ(ierr); 2065*e600fa54SMatthew G. Knepley ierr = DMPlexCopy_Internal(dm, PETSC_TRUE, *redundantMesh);CHKERRQ(ierr); 20666462276dSToby Isaac PetscFunctionReturn(0); 20676462276dSToby Isaac } 20685fa78c88SVaclav Hapla 20695fa78c88SVaclav Hapla /*@ 20705fa78c88SVaclav Hapla DMPlexIsDistributed - Find out whether this DM is distributed, i.e. more than one rank owns some points. 20715fa78c88SVaclav Hapla 20725fa78c88SVaclav Hapla Collective 20735fa78c88SVaclav Hapla 20745fa78c88SVaclav Hapla Input Parameter: 20755fa78c88SVaclav Hapla . dm - The DM object 20765fa78c88SVaclav Hapla 20775fa78c88SVaclav Hapla Output Parameter: 20785fa78c88SVaclav Hapla . distributed - Flag whether the DM is distributed 20795fa78c88SVaclav Hapla 20805fa78c88SVaclav Hapla Level: intermediate 20815fa78c88SVaclav Hapla 20825fa78c88SVaclav Hapla Notes: 20835fa78c88SVaclav Hapla This currently finds out whether at least two ranks have any DAG points. 20845fa78c88SVaclav Hapla This involves MPI_Allreduce() with one integer. 20855fa78c88SVaclav Hapla The result is currently not stashed so every call to this routine involves this global communication. 20865fa78c88SVaclav Hapla 20875fa78c88SVaclav Hapla .seealso: DMPlexDistribute(), DMPlexGetOverlap(), DMPlexIsInterpolated() 20885fa78c88SVaclav Hapla @*/ 20895fa78c88SVaclav Hapla PetscErrorCode DMPlexIsDistributed(DM dm, PetscBool *distributed) 20905fa78c88SVaclav Hapla { 20915fa78c88SVaclav Hapla PetscInt pStart, pEnd, count; 20925fa78c88SVaclav Hapla MPI_Comm comm; 209335d70e31SStefano Zampini PetscMPIInt size; 20945fa78c88SVaclav Hapla PetscErrorCode ierr; 20955fa78c88SVaclav Hapla 20965fa78c88SVaclav Hapla PetscFunctionBegin; 20975fa78c88SVaclav Hapla PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 20985fa78c88SVaclav Hapla PetscValidPointer(distributed,2); 20995fa78c88SVaclav Hapla ierr = PetscObjectGetComm((PetscObject)dm,&comm);CHKERRQ(ierr); 210035d70e31SStefano Zampini ierr = MPI_Comm_size(comm,&size);CHKERRMPI(ierr); 210135d70e31SStefano Zampini if (size == 1) { *distributed = PETSC_FALSE; PetscFunctionReturn(0); } 21025fa78c88SVaclav Hapla ierr = DMPlexGetChart(dm, &pStart, &pEnd);CHKERRQ(ierr); 210335d70e31SStefano Zampini count = (pEnd - pStart) > 0 ? 1 : 0; 2104ffc4695bSBarry Smith ierr = MPI_Allreduce(MPI_IN_PLACE, &count, 1, MPIU_INT, MPI_SUM, comm);CHKERRMPI(ierr); 21055fa78c88SVaclav Hapla *distributed = count > 1 ? PETSC_TRUE : PETSC_FALSE; 21065fa78c88SVaclav Hapla PetscFunctionReturn(0); 21075fa78c88SVaclav Hapla } 2108