xref: /petsc/src/dm/impls/plex/plexdistribute.c (revision fc6a3818314a36d99fba4fb8a53601d6b2110c2a)
1af0996ceSBarry Smith #include <petsc/private/dmpleximpl.h>  /*I      "petscdmplex.h"   I*/
2c58f1c22SToby Isaac #include <petsc/private/dmlabelimpl.h> /*I      "petscdmlabel.h"  I*/
370034214SMatthew G. Knepley 
43c1f0c11SLawrence Mitchell /*@C
53c1f0c11SLawrence Mitchell   DMPlexSetAdjacencyUser - Define adjacency in the mesh using a user-provided callback
63c1f0c11SLawrence Mitchell 
73c1f0c11SLawrence Mitchell   Input Parameters:
83c1f0c11SLawrence Mitchell + dm      - The DM object
93c1f0c11SLawrence Mitchell . user    - The user callback, may be NULL (to clear the callback)
103c1f0c11SLawrence Mitchell - ctx     - context for callback evaluation, may be NULL
113c1f0c11SLawrence Mitchell 
123c1f0c11SLawrence Mitchell   Level: advanced
133c1f0c11SLawrence Mitchell 
143c1f0c11SLawrence Mitchell   Notes:
153c1f0c11SLawrence Mitchell      The caller of DMPlexGetAdjacency may need to arrange that a large enough array is available for the adjacency.
163c1f0c11SLawrence Mitchell 
173c1f0c11SLawrence Mitchell      Any setting here overrides other configuration of DMPlex adjacency determination.
183c1f0c11SLawrence Mitchell 
19db781477SPatrick Sanan .seealso: `DMSetAdjacency()`, `DMPlexDistribute()`, `DMPlexPreallocateOperator()`, `DMPlexGetAdjacency()`, `DMPlexGetAdjacencyUser()`
203c1f0c11SLawrence Mitchell @*/
219371c9d4SSatish Balay PetscErrorCode DMPlexSetAdjacencyUser(DM dm, PetscErrorCode (*user)(DM, PetscInt, PetscInt *, PetscInt[], void *), void *ctx) {
223c1f0c11SLawrence Mitchell   DM_Plex *mesh = (DM_Plex *)dm->data;
233c1f0c11SLawrence Mitchell 
243c1f0c11SLawrence Mitchell   PetscFunctionBegin;
253c1f0c11SLawrence Mitchell   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
263c1f0c11SLawrence Mitchell   mesh->useradjacency    = user;
273c1f0c11SLawrence Mitchell   mesh->useradjacencyctx = ctx;
283c1f0c11SLawrence Mitchell   PetscFunctionReturn(0);
293c1f0c11SLawrence Mitchell }
303c1f0c11SLawrence Mitchell 
313c1f0c11SLawrence Mitchell /*@C
323c1f0c11SLawrence Mitchell   DMPlexGetAdjacencyUser - get the user-defined adjacency callback
333c1f0c11SLawrence Mitchell 
343c1f0c11SLawrence Mitchell   Input Parameter:
353c1f0c11SLawrence Mitchell . dm      - The DM object
363c1f0c11SLawrence Mitchell 
373c1f0c11SLawrence Mitchell   Output Parameters:
38ef1023bdSBarry Smith + user    - The callback
393c1f0c11SLawrence Mitchell - ctx     - context for callback evaluation
403c1f0c11SLawrence Mitchell 
413c1f0c11SLawrence Mitchell   Level: advanced
423c1f0c11SLawrence Mitchell 
43db781477SPatrick Sanan .seealso: `DMSetAdjacency()`, `DMPlexDistribute()`, `DMPlexPreallocateOperator()`, `DMPlexGetAdjacency()`, `DMPlexSetAdjacencyUser()`
443c1f0c11SLawrence Mitchell @*/
459371c9d4SSatish Balay PetscErrorCode DMPlexGetAdjacencyUser(DM dm, PetscErrorCode (**user)(DM, PetscInt, PetscInt *, PetscInt[], void *), void **ctx) {
463c1f0c11SLawrence Mitchell   DM_Plex *mesh = (DM_Plex *)dm->data;
473c1f0c11SLawrence Mitchell 
483c1f0c11SLawrence Mitchell   PetscFunctionBegin;
493c1f0c11SLawrence Mitchell   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
503c1f0c11SLawrence Mitchell   if (user) *user = mesh->useradjacency;
513c1f0c11SLawrence Mitchell   if (ctx) *ctx = mesh->useradjacencyctx;
523c1f0c11SLawrence Mitchell   PetscFunctionReturn(0);
533c1f0c11SLawrence Mitchell }
543c1f0c11SLawrence Mitchell 
5570034214SMatthew G. Knepley /*@
56a17985deSToby Isaac   DMPlexSetAdjacencyUseAnchors - Define adjacency in the mesh using the point-to-point constraints.
578b0b4c70SToby Isaac 
588b0b4c70SToby Isaac   Input Parameters:
598b0b4c70SToby Isaac + dm      - The DM object
605b317d89SToby Isaac - useAnchors - Flag to use the constraints.  If PETSC_TRUE, then constrained points are omitted from DMPlexGetAdjacency(), and their anchor points appear in their place.
618b0b4c70SToby Isaac 
628b0b4c70SToby Isaac   Level: intermediate
638b0b4c70SToby Isaac 
64db781477SPatrick Sanan .seealso: `DMGetAdjacency()`, `DMSetAdjacency()`, `DMPlexDistribute()`, `DMPlexPreallocateOperator()`, `DMPlexSetAnchors()`
658b0b4c70SToby Isaac @*/
669371c9d4SSatish Balay PetscErrorCode DMPlexSetAdjacencyUseAnchors(DM dm, PetscBool useAnchors) {
678b0b4c70SToby Isaac   DM_Plex *mesh = (DM_Plex *)dm->data;
688b0b4c70SToby Isaac 
698b0b4c70SToby Isaac   PetscFunctionBegin;
708b0b4c70SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
715b317d89SToby Isaac   mesh->useAnchors = useAnchors;
728b0b4c70SToby Isaac   PetscFunctionReturn(0);
738b0b4c70SToby Isaac }
748b0b4c70SToby Isaac 
758b0b4c70SToby Isaac /*@
76a17985deSToby Isaac   DMPlexGetAdjacencyUseAnchors - Query whether adjacency in the mesh uses the point-to-point constraints.
778b0b4c70SToby Isaac 
788b0b4c70SToby Isaac   Input Parameter:
798b0b4c70SToby Isaac . dm      - The DM object
808b0b4c70SToby Isaac 
818b0b4c70SToby Isaac   Output Parameter:
825b317d89SToby Isaac . useAnchors - Flag to use the closure.  If PETSC_TRUE, then constrained points are omitted from DMPlexGetAdjacency(), and their anchor points appear in their place.
838b0b4c70SToby Isaac 
848b0b4c70SToby Isaac   Level: intermediate
858b0b4c70SToby Isaac 
86db781477SPatrick Sanan .seealso: `DMPlexSetAdjacencyUseAnchors()`, `DMSetAdjacency()`, `DMGetAdjacency()`, `DMPlexDistribute()`, `DMPlexPreallocateOperator()`, `DMPlexSetAnchors()`
878b0b4c70SToby Isaac @*/
889371c9d4SSatish Balay PetscErrorCode DMPlexGetAdjacencyUseAnchors(DM dm, PetscBool *useAnchors) {
898b0b4c70SToby Isaac   DM_Plex *mesh = (DM_Plex *)dm->data;
908b0b4c70SToby Isaac 
918b0b4c70SToby Isaac   PetscFunctionBegin;
928b0b4c70SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
93064a246eSJacob Faibussowitsch   PetscValidBoolPointer(useAnchors, 2);
945b317d89SToby Isaac   *useAnchors = mesh->useAnchors;
958b0b4c70SToby Isaac   PetscFunctionReturn(0);
968b0b4c70SToby Isaac }
978b0b4c70SToby Isaac 
989371c9d4SSatish Balay static PetscErrorCode DMPlexGetAdjacency_Cone_Internal(DM dm, PetscInt p, PetscInt *adjSize, PetscInt adj[]) {
9970034214SMatthew G. Knepley   const PetscInt *cone   = NULL;
10070034214SMatthew G. Knepley   PetscInt        numAdj = 0, maxAdjSize = *adjSize, coneSize, c;
10170034214SMatthew G. Knepley 
10270034214SMatthew G. Knepley   PetscFunctionBeginHot;
1039566063dSJacob Faibussowitsch   PetscCall(DMPlexGetConeSize(dm, p, &coneSize));
1049566063dSJacob Faibussowitsch   PetscCall(DMPlexGetCone(dm, p, &cone));
1054b6b44bdSMatthew G. Knepley   for (c = 0; c <= coneSize; ++c) {
1064b6b44bdSMatthew G. Knepley     const PetscInt  point   = !c ? p : cone[c - 1];
10770034214SMatthew G. Knepley     const PetscInt *support = NULL;
10870034214SMatthew G. Knepley     PetscInt        supportSize, s, q;
10970034214SMatthew G. Knepley 
1109566063dSJacob Faibussowitsch     PetscCall(DMPlexGetSupportSize(dm, point, &supportSize));
1119566063dSJacob Faibussowitsch     PetscCall(DMPlexGetSupport(dm, point, &support));
11270034214SMatthew G. Knepley     for (s = 0; s < supportSize; ++s) {
113527e7439SSatish Balay       for (q = 0; q < numAdj || ((void)(adj[numAdj++] = support[s]), 0); ++q) {
11470034214SMatthew G. Knepley         if (support[s] == adj[q]) break;
11570034214SMatthew G. Knepley       }
11663a3b9bcSJacob Faibussowitsch       PetscCheck(numAdj <= maxAdjSize, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid mesh exceeded adjacency allocation (%" PetscInt_FMT ")", maxAdjSize);
11770034214SMatthew G. Knepley     }
11870034214SMatthew G. Knepley   }
11970034214SMatthew G. Knepley   *adjSize = numAdj;
12070034214SMatthew G. Knepley   PetscFunctionReturn(0);
12170034214SMatthew G. Knepley }
12270034214SMatthew G. Knepley 
1239371c9d4SSatish Balay static PetscErrorCode DMPlexGetAdjacency_Support_Internal(DM dm, PetscInt p, PetscInt *adjSize, PetscInt adj[]) {
12470034214SMatthew G. Knepley   const PetscInt *support = NULL;
12570034214SMatthew G. Knepley   PetscInt        numAdj = 0, maxAdjSize = *adjSize, supportSize, s;
12670034214SMatthew G. Knepley 
12770034214SMatthew G. Knepley   PetscFunctionBeginHot;
1289566063dSJacob Faibussowitsch   PetscCall(DMPlexGetSupportSize(dm, p, &supportSize));
1299566063dSJacob Faibussowitsch   PetscCall(DMPlexGetSupport(dm, p, &support));
1304b6b44bdSMatthew G. Knepley   for (s = 0; s <= supportSize; ++s) {
1314b6b44bdSMatthew G. Knepley     const PetscInt  point = !s ? p : support[s - 1];
13270034214SMatthew G. Knepley     const PetscInt *cone  = NULL;
13370034214SMatthew G. Knepley     PetscInt        coneSize, c, q;
13470034214SMatthew G. Knepley 
1359566063dSJacob Faibussowitsch     PetscCall(DMPlexGetConeSize(dm, point, &coneSize));
1369566063dSJacob Faibussowitsch     PetscCall(DMPlexGetCone(dm, point, &cone));
13770034214SMatthew G. Knepley     for (c = 0; c < coneSize; ++c) {
138527e7439SSatish Balay       for (q = 0; q < numAdj || ((void)(adj[numAdj++] = cone[c]), 0); ++q) {
13970034214SMatthew G. Knepley         if (cone[c] == adj[q]) break;
14070034214SMatthew G. Knepley       }
14163a3b9bcSJacob Faibussowitsch       PetscCheck(numAdj <= maxAdjSize, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid mesh exceeded adjacency allocation (%" PetscInt_FMT ")", maxAdjSize);
14270034214SMatthew G. Knepley     }
14370034214SMatthew G. Knepley   }
14470034214SMatthew G. Knepley   *adjSize = numAdj;
14570034214SMatthew G. Knepley   PetscFunctionReturn(0);
14670034214SMatthew G. Knepley }
14770034214SMatthew G. Knepley 
1489371c9d4SSatish Balay static PetscErrorCode DMPlexGetAdjacency_Transitive_Internal(DM dm, PetscInt p, PetscBool useClosure, PetscInt *adjSize, PetscInt adj[]) {
14970034214SMatthew G. Knepley   PetscInt *star   = NULL;
15070034214SMatthew G. Knepley   PetscInt  numAdj = 0, maxAdjSize = *adjSize, starSize, s;
15170034214SMatthew G. Knepley 
15270034214SMatthew G. Knepley   PetscFunctionBeginHot;
1539566063dSJacob Faibussowitsch   PetscCall(DMPlexGetTransitiveClosure(dm, p, useClosure, &starSize, &star));
15470034214SMatthew G. Knepley   for (s = 0; s < starSize * 2; s += 2) {
15570034214SMatthew G. Knepley     const PetscInt *closure = NULL;
15670034214SMatthew G. Knepley     PetscInt        closureSize, c, q;
15770034214SMatthew G. Knepley 
1589566063dSJacob Faibussowitsch     PetscCall(DMPlexGetTransitiveClosure(dm, star[s], (PetscBool)!useClosure, &closureSize, (PetscInt **)&closure));
15970034214SMatthew G. Knepley     for (c = 0; c < closureSize * 2; c += 2) {
160527e7439SSatish Balay       for (q = 0; q < numAdj || ((void)(adj[numAdj++] = closure[c]), 0); ++q) {
16170034214SMatthew G. Knepley         if (closure[c] == adj[q]) break;
16270034214SMatthew G. Knepley       }
16363a3b9bcSJacob Faibussowitsch       PetscCheck(numAdj <= maxAdjSize, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid mesh exceeded adjacency allocation (%" PetscInt_FMT ")", maxAdjSize);
16470034214SMatthew G. Knepley     }
1659566063dSJacob Faibussowitsch     PetscCall(DMPlexRestoreTransitiveClosure(dm, star[s], (PetscBool)!useClosure, &closureSize, (PetscInt **)&closure));
16670034214SMatthew G. Knepley   }
1679566063dSJacob Faibussowitsch   PetscCall(DMPlexRestoreTransitiveClosure(dm, p, useClosure, &starSize, &star));
16870034214SMatthew G. Knepley   *adjSize = numAdj;
16970034214SMatthew G. Knepley   PetscFunctionReturn(0);
17070034214SMatthew G. Knepley }
17170034214SMatthew G. Knepley 
1729371c9d4SSatish Balay PetscErrorCode DMPlexGetAdjacency_Internal(DM dm, PetscInt p, PetscBool useCone, PetscBool useTransitiveClosure, PetscBool useAnchors, PetscInt *adjSize, PetscInt *adj[]) {
17379bad331SMatthew G. Knepley   static PetscInt asiz       = 0;
1748b0b4c70SToby Isaac   PetscInt        maxAnchors = 1;
1758b0b4c70SToby Isaac   PetscInt        aStart = -1, aEnd = -1;
1768b0b4c70SToby Isaac   PetscInt        maxAdjSize;
1778b0b4c70SToby Isaac   PetscSection    aSec = NULL;
1788b0b4c70SToby Isaac   IS              aIS  = NULL;
1798b0b4c70SToby Isaac   const PetscInt *anchors;
1803c1f0c11SLawrence Mitchell   DM_Plex        *mesh = (DM_Plex *)dm->data;
18170034214SMatthew G. Knepley 
18270034214SMatthew G. Knepley   PetscFunctionBeginHot;
1835b317d89SToby Isaac   if (useAnchors) {
1849566063dSJacob Faibussowitsch     PetscCall(DMPlexGetAnchors(dm, &aSec, &aIS));
1858b0b4c70SToby Isaac     if (aSec) {
1869566063dSJacob Faibussowitsch       PetscCall(PetscSectionGetMaxDof(aSec, &maxAnchors));
18724c766afSToby Isaac       maxAnchors = PetscMax(1, maxAnchors);
1889566063dSJacob Faibussowitsch       PetscCall(PetscSectionGetChart(aSec, &aStart, &aEnd));
1899566063dSJacob Faibussowitsch       PetscCall(ISGetIndices(aIS, &anchors));
1908b0b4c70SToby Isaac     }
1918b0b4c70SToby Isaac   }
19279bad331SMatthew G. Knepley   if (!*adj) {
19324c766afSToby Isaac     PetscInt depth, coneSeries, supportSeries, maxC, maxS, pStart, pEnd;
19479bad331SMatthew G. Knepley 
1959566063dSJacob Faibussowitsch     PetscCall(DMPlexGetChart(dm, &pStart, &pEnd));
1969566063dSJacob Faibussowitsch     PetscCall(DMPlexGetDepth(dm, &depth));
197412e9a14SMatthew G. Knepley     depth = PetscMax(depth, -depth);
1989566063dSJacob Faibussowitsch     PetscCall(DMPlexGetMaxSizes(dm, &maxC, &maxS));
19924c766afSToby Isaac     coneSeries    = (maxC > 1) ? ((PetscPowInt(maxC, depth + 1) - 1) / (maxC - 1)) : depth + 1;
20024c766afSToby Isaac     supportSeries = (maxS > 1) ? ((PetscPowInt(maxS, depth + 1) - 1) / (maxS - 1)) : depth + 1;
20124c766afSToby Isaac     asiz          = PetscMax(PetscPowInt(maxS, depth) * coneSeries, PetscPowInt(maxC, depth) * supportSeries);
2028b0b4c70SToby Isaac     asiz *= maxAnchors;
20324c766afSToby Isaac     asiz = PetscMin(asiz, pEnd - pStart);
2049566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(asiz, adj));
20579bad331SMatthew G. Knepley   }
20679bad331SMatthew G. Knepley   if (*adjSize < 0) *adjSize = asiz;
2078b0b4c70SToby Isaac   maxAdjSize = *adjSize;
2083c1f0c11SLawrence Mitchell   if (mesh->useradjacency) {
2099566063dSJacob Faibussowitsch     PetscCall((*mesh->useradjacency)(dm, p, adjSize, *adj, mesh->useradjacencyctx));
2103c1f0c11SLawrence Mitchell   } else if (useTransitiveClosure) {
2119566063dSJacob Faibussowitsch     PetscCall(DMPlexGetAdjacency_Transitive_Internal(dm, p, useCone, adjSize, *adj));
21270034214SMatthew G. Knepley   } else if (useCone) {
2139566063dSJacob Faibussowitsch     PetscCall(DMPlexGetAdjacency_Cone_Internal(dm, p, adjSize, *adj));
21470034214SMatthew G. Knepley   } else {
2159566063dSJacob Faibussowitsch     PetscCall(DMPlexGetAdjacency_Support_Internal(dm, p, adjSize, *adj));
21670034214SMatthew G. Knepley   }
2175b317d89SToby Isaac   if (useAnchors && aSec) {
2188b0b4c70SToby Isaac     PetscInt  origSize = *adjSize;
2198b0b4c70SToby Isaac     PetscInt  numAdj   = origSize;
2208b0b4c70SToby Isaac     PetscInt  i        = 0, j;
2218b0b4c70SToby Isaac     PetscInt *orig     = *adj;
2228b0b4c70SToby Isaac 
2238b0b4c70SToby Isaac     while (i < origSize) {
2248b0b4c70SToby Isaac       PetscInt p    = orig[i];
2258b0b4c70SToby Isaac       PetscInt aDof = 0;
2268b0b4c70SToby Isaac 
2279371c9d4SSatish Balay       if (p >= aStart && p < aEnd) { PetscCall(PetscSectionGetDof(aSec, p, &aDof)); }
2288b0b4c70SToby Isaac       if (aDof) {
2298b0b4c70SToby Isaac         PetscInt aOff;
2308b0b4c70SToby Isaac         PetscInt s, q;
2318b0b4c70SToby Isaac 
2329371c9d4SSatish Balay         for (j = i + 1; j < numAdj; j++) { orig[j - 1] = orig[j]; }
2338b0b4c70SToby Isaac         origSize--;
2348b0b4c70SToby Isaac         numAdj--;
2359566063dSJacob Faibussowitsch         PetscCall(PetscSectionGetOffset(aSec, p, &aOff));
2368b0b4c70SToby Isaac         for (s = 0; s < aDof; ++s) {
237527e7439SSatish Balay           for (q = 0; q < numAdj || ((void)(orig[numAdj++] = anchors[aOff + s]), 0); ++q) {
2388b0b4c70SToby Isaac             if (anchors[aOff + s] == orig[q]) break;
2398b0b4c70SToby Isaac           }
24063a3b9bcSJacob Faibussowitsch           PetscCheck(numAdj <= maxAdjSize, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid mesh exceeded adjacency allocation (%" PetscInt_FMT ")", maxAdjSize);
2418b0b4c70SToby Isaac         }
2429371c9d4SSatish Balay       } else {
2438b0b4c70SToby Isaac         i++;
2448b0b4c70SToby Isaac       }
2458b0b4c70SToby Isaac     }
2468b0b4c70SToby Isaac     *adjSize = numAdj;
2479566063dSJacob Faibussowitsch     PetscCall(ISRestoreIndices(aIS, &anchors));
2488b0b4c70SToby Isaac   }
24970034214SMatthew G. Knepley   PetscFunctionReturn(0);
25070034214SMatthew G. Knepley }
25170034214SMatthew G. Knepley 
25270034214SMatthew G. Knepley /*@
25370034214SMatthew G. Knepley   DMPlexGetAdjacency - Return all points adjacent to the given point
25470034214SMatthew G. Knepley 
25570034214SMatthew G. Knepley   Input Parameters:
25670034214SMatthew G. Knepley + dm - The DM object
2576b867d5aSJose E. Roman - p  - The point
25870034214SMatthew G. Knepley 
2596b867d5aSJose E. Roman   Input/Output Parameters:
2606b867d5aSJose E. Roman + adjSize - The maximum size of adj if it is non-NULL, or PETSC_DETERMINE;
2616b867d5aSJose E. Roman             on output the number of adjacent points
2626b867d5aSJose E. Roman - adj - Either NULL so that the array is allocated, or an existing array with size adjSize;
2636b867d5aSJose E. Roman         on output contains the adjacent points
26470034214SMatthew G. Knepley 
26570034214SMatthew G. Knepley   Level: advanced
26670034214SMatthew G. Knepley 
26795452b02SPatrick Sanan   Notes:
26895452b02SPatrick Sanan     The user must PetscFree the adj array if it was not passed in.
26970034214SMatthew G. Knepley 
270db781477SPatrick Sanan .seealso: `DMSetAdjacency()`, `DMPlexDistribute()`, `DMCreateMatrix()`, `DMPlexPreallocateOperator()`
27170034214SMatthew G. Knepley @*/
2729371c9d4SSatish Balay PetscErrorCode DMPlexGetAdjacency(DM dm, PetscInt p, PetscInt *adjSize, PetscInt *adj[]) {
2731cf84007SMatthew G. Knepley   PetscBool useCone, useClosure, useAnchors;
27470034214SMatthew G. Knepley 
27570034214SMatthew G. Knepley   PetscFunctionBeginHot;
27670034214SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
277dadcf809SJacob Faibussowitsch   PetscValidIntPointer(adjSize, 3);
27870034214SMatthew G. Knepley   PetscValidPointer(adj, 4);
2799566063dSJacob Faibussowitsch   PetscCall(DMGetBasicAdjacency(dm, &useCone, &useClosure));
2809566063dSJacob Faibussowitsch   PetscCall(DMPlexGetAdjacencyUseAnchors(dm, &useAnchors));
2819566063dSJacob Faibussowitsch   PetscCall(DMPlexGetAdjacency_Internal(dm, p, useCone, useClosure, useAnchors, adjSize, adj));
28270034214SMatthew G. Knepley   PetscFunctionReturn(0);
28370034214SMatthew G. Knepley }
28408633170SToby Isaac 
285b0a623aaSMatthew G. Knepley /*@
286b0a623aaSMatthew G. Knepley   DMPlexCreateTwoSidedProcessSF - Create an SF which just has process connectivity
287b0a623aaSMatthew G. Knepley 
288d083f849SBarry Smith   Collective on dm
289b0a623aaSMatthew G. Knepley 
290b0a623aaSMatthew G. Knepley   Input Parameters:
291b0a623aaSMatthew G. Knepley + dm      - The DM
2926b867d5aSJose E. Roman . sfPoint - The PetscSF which encodes point connectivity
2936b867d5aSJose E. Roman . rootRankSection -
2946b867d5aSJose E. Roman . rootRanks -
2956b867d5aSJose E. Roman . leftRankSection -
2966b867d5aSJose E. Roman - leafRanks -
297b0a623aaSMatthew G. Knepley 
298b0a623aaSMatthew G. Knepley   Output Parameters:
299b0a623aaSMatthew G. Knepley + processRanks - A list of process neighbors, or NULL
300b0a623aaSMatthew G. Knepley - sfProcess    - An SF encoding the two-sided process connectivity, or NULL
301b0a623aaSMatthew G. Knepley 
302b0a623aaSMatthew G. Knepley   Level: developer
303b0a623aaSMatthew G. Knepley 
304db781477SPatrick Sanan .seealso: `PetscSFCreate()`, `DMPlexCreateProcessSF()`
305b0a623aaSMatthew G. Knepley @*/
3069371c9d4SSatish Balay PetscErrorCode DMPlexCreateTwoSidedProcessSF(DM dm, PetscSF sfPoint, PetscSection rootRankSection, IS rootRanks, PetscSection leafRankSection, IS leafRanks, IS *processRanks, PetscSF *sfProcess) {
307b0a623aaSMatthew G. Knepley   const PetscSFNode *remotePoints;
308b0a623aaSMatthew G. Knepley   PetscInt          *localPointsNew;
309b0a623aaSMatthew G. Knepley   PetscSFNode       *remotePointsNew;
310b0a623aaSMatthew G. Knepley   const PetscInt    *nranks;
311b0a623aaSMatthew G. Knepley   PetscInt          *ranksNew;
312b0a623aaSMatthew G. Knepley   PetscBT            neighbors;
313b0a623aaSMatthew G. Knepley   PetscInt           pStart, pEnd, p, numLeaves, l, numNeighbors, n;
3149852e123SBarry Smith   PetscMPIInt        size, proc, rank;
315b0a623aaSMatthew G. Knepley 
316b0a623aaSMatthew G. Knepley   PetscFunctionBegin;
317b0a623aaSMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
318b0a623aaSMatthew G. Knepley   PetscValidHeaderSpecific(sfPoint, PETSCSF_CLASSID, 2);
319064a246eSJacob Faibussowitsch   if (processRanks) { PetscValidPointer(processRanks, 7); }
320064a246eSJacob Faibussowitsch   if (sfProcess) { PetscValidPointer(sfProcess, 8); }
3219566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)dm), &size));
3229566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)dm), &rank));
3239566063dSJacob Faibussowitsch   PetscCall(PetscSFGetGraph(sfPoint, NULL, &numLeaves, NULL, &remotePoints));
3249566063dSJacob Faibussowitsch   PetscCall(PetscBTCreate(size, &neighbors));
3259566063dSJacob Faibussowitsch   PetscCall(PetscBTMemzero(size, neighbors));
326b0a623aaSMatthew G. Knepley   /* Compute root-to-leaf process connectivity */
3279566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetChart(rootRankSection, &pStart, &pEnd));
3289566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(rootRanks, &nranks));
329b0a623aaSMatthew G. Knepley   for (p = pStart; p < pEnd; ++p) {
330b0a623aaSMatthew G. Knepley     PetscInt ndof, noff, n;
331b0a623aaSMatthew G. Knepley 
3329566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetDof(rootRankSection, p, &ndof));
3339566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetOffset(rootRankSection, p, &noff));
3349566063dSJacob Faibussowitsch     for (n = 0; n < ndof; ++n) PetscCall(PetscBTSet(neighbors, nranks[noff + n]));
335b0a623aaSMatthew G. Knepley   }
3369566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(rootRanks, &nranks));
337b0a623aaSMatthew G. Knepley   /* Compute leaf-to-neighbor process connectivity */
3389566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetChart(leafRankSection, &pStart, &pEnd));
3399566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(leafRanks, &nranks));
340b0a623aaSMatthew G. Knepley   for (p = pStart; p < pEnd; ++p) {
341b0a623aaSMatthew G. Knepley     PetscInt ndof, noff, n;
342b0a623aaSMatthew G. Knepley 
3439566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetDof(leafRankSection, p, &ndof));
3449566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetOffset(leafRankSection, p, &noff));
3459566063dSJacob Faibussowitsch     for (n = 0; n < ndof; ++n) PetscCall(PetscBTSet(neighbors, nranks[noff + n]));
346b0a623aaSMatthew G. Knepley   }
3479566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(leafRanks, &nranks));
348b0a623aaSMatthew G. Knepley   /* Compute leaf-to-root process connectivity */
349b0a623aaSMatthew G. Knepley   for (l = 0; l < numLeaves; ++l) { PetscBTSet(neighbors, remotePoints[l].rank); }
350b0a623aaSMatthew G. Knepley   /* Calculate edges */
351b0a623aaSMatthew G. Knepley   PetscBTClear(neighbors, rank);
3529371c9d4SSatish Balay   for (proc = 0, numNeighbors = 0; proc < size; ++proc) {
3539371c9d4SSatish Balay     if (PetscBTLookup(neighbors, proc)) ++numNeighbors;
3549371c9d4SSatish Balay   }
3559566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(numNeighbors, &ranksNew));
3569566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(numNeighbors, &localPointsNew));
3579566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(numNeighbors, &remotePointsNew));
3589852e123SBarry Smith   for (proc = 0, n = 0; proc < size; ++proc) {
359b0a623aaSMatthew G. Knepley     if (PetscBTLookup(neighbors, proc)) {
360b0a623aaSMatthew G. Knepley       ranksNew[n]              = proc;
361b0a623aaSMatthew G. Knepley       localPointsNew[n]        = proc;
362b0a623aaSMatthew G. Knepley       remotePointsNew[n].index = rank;
363b0a623aaSMatthew G. Knepley       remotePointsNew[n].rank  = proc;
364b0a623aaSMatthew G. Knepley       ++n;
365b0a623aaSMatthew G. Knepley     }
366b0a623aaSMatthew G. Knepley   }
3679566063dSJacob Faibussowitsch   PetscCall(PetscBTDestroy(&neighbors));
3689566063dSJacob Faibussowitsch   if (processRanks) PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)dm), numNeighbors, ranksNew, PETSC_OWN_POINTER, processRanks));
3699566063dSJacob Faibussowitsch   else PetscCall(PetscFree(ranksNew));
370b0a623aaSMatthew G. Knepley   if (sfProcess) {
3719566063dSJacob Faibussowitsch     PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)dm), sfProcess));
3729566063dSJacob Faibussowitsch     PetscCall(PetscObjectSetName((PetscObject)*sfProcess, "Two-Sided Process SF"));
3739566063dSJacob Faibussowitsch     PetscCall(PetscSFSetFromOptions(*sfProcess));
3749566063dSJacob Faibussowitsch     PetscCall(PetscSFSetGraph(*sfProcess, size, numNeighbors, localPointsNew, PETSC_OWN_POINTER, remotePointsNew, PETSC_OWN_POINTER));
375b0a623aaSMatthew G. Knepley   }
376b0a623aaSMatthew G. Knepley   PetscFunctionReturn(0);
377b0a623aaSMatthew G. Knepley }
378b0a623aaSMatthew G. Knepley 
379b0a623aaSMatthew G. Knepley /*@
380b0a623aaSMatthew G. Knepley   DMPlexDistributeOwnership - Compute owner information for shared points. This basically gets two-sided for an SF.
381b0a623aaSMatthew G. Knepley 
382d083f849SBarry Smith   Collective on dm
383b0a623aaSMatthew G. Knepley 
384b0a623aaSMatthew G. Knepley   Input Parameter:
385b0a623aaSMatthew G. Knepley . dm - The DM
386b0a623aaSMatthew G. Knepley 
387b0a623aaSMatthew G. Knepley   Output Parameters:
388b0a623aaSMatthew G. Knepley + rootSection - The number of leaves for a given root point
389b0a623aaSMatthew G. Knepley . rootrank    - The rank of each edge into the root point
390b0a623aaSMatthew G. Knepley . leafSection - The number of processes sharing a given leaf point
391b0a623aaSMatthew G. Knepley - leafrank    - The rank of each process sharing a leaf point
392b0a623aaSMatthew G. Knepley 
393b0a623aaSMatthew G. Knepley   Level: developer
394b0a623aaSMatthew G. Knepley 
395db781477SPatrick Sanan .seealso: `DMPlexCreateOverlapLabel()`, `DMPlexDistribute()`, `DMPlexDistributeOverlap()`
396b0a623aaSMatthew G. Knepley @*/
3979371c9d4SSatish Balay PetscErrorCode DMPlexDistributeOwnership(DM dm, PetscSection rootSection, IS *rootrank, PetscSection leafSection, IS *leafrank) {
398b0a623aaSMatthew G. Knepley   MPI_Comm        comm;
399b0a623aaSMatthew G. Knepley   PetscSF         sfPoint;
400b0a623aaSMatthew G. Knepley   const PetscInt *rootdegree;
401b0a623aaSMatthew G. Knepley   PetscInt       *myrank, *remoterank;
402b0a623aaSMatthew G. Knepley   PetscInt        pStart, pEnd, p, nedges;
403b0a623aaSMatthew G. Knepley   PetscMPIInt     rank;
404b0a623aaSMatthew G. Knepley 
405b0a623aaSMatthew G. Knepley   PetscFunctionBegin;
4069566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)dm, &comm));
4079566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(comm, &rank));
4089566063dSJacob Faibussowitsch   PetscCall(DMPlexGetChart(dm, &pStart, &pEnd));
4099566063dSJacob Faibussowitsch   PetscCall(DMGetPointSF(dm, &sfPoint));
410b0a623aaSMatthew G. Knepley   /* Compute number of leaves for each root */
4119566063dSJacob Faibussowitsch   PetscCall(PetscObjectSetName((PetscObject)rootSection, "Root Section"));
4129566063dSJacob Faibussowitsch   PetscCall(PetscSectionSetChart(rootSection, pStart, pEnd));
4139566063dSJacob Faibussowitsch   PetscCall(PetscSFComputeDegreeBegin(sfPoint, &rootdegree));
4149566063dSJacob Faibussowitsch   PetscCall(PetscSFComputeDegreeEnd(sfPoint, &rootdegree));
4159566063dSJacob Faibussowitsch   for (p = pStart; p < pEnd; ++p) PetscCall(PetscSectionSetDof(rootSection, p, rootdegree[p - pStart]));
4169566063dSJacob Faibussowitsch   PetscCall(PetscSectionSetUp(rootSection));
417b0a623aaSMatthew G. Knepley   /* Gather rank of each leaf to root */
4189566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetStorageSize(rootSection, &nedges));
4199566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(pEnd - pStart, &myrank));
4209566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(nedges, &remoterank));
421b0a623aaSMatthew G. Knepley   for (p = 0; p < pEnd - pStart; ++p) myrank[p] = rank;
4229566063dSJacob Faibussowitsch   PetscCall(PetscSFGatherBegin(sfPoint, MPIU_INT, myrank, remoterank));
4239566063dSJacob Faibussowitsch   PetscCall(PetscSFGatherEnd(sfPoint, MPIU_INT, myrank, remoterank));
4249566063dSJacob Faibussowitsch   PetscCall(PetscFree(myrank));
4259566063dSJacob Faibussowitsch   PetscCall(ISCreateGeneral(comm, nedges, remoterank, PETSC_OWN_POINTER, rootrank));
426b0a623aaSMatthew G. Knepley   /* Distribute remote ranks to leaves */
4279566063dSJacob Faibussowitsch   PetscCall(PetscObjectSetName((PetscObject)leafSection, "Leaf Section"));
4289566063dSJacob Faibussowitsch   PetscCall(DMPlexDistributeFieldIS(dm, sfPoint, rootSection, *rootrank, leafSection, leafrank));
429b0a623aaSMatthew G. Knepley   PetscFunctionReturn(0);
430b0a623aaSMatthew G. Knepley }
431b0a623aaSMatthew G. Knepley 
432c506a872SMatthew G. Knepley #if 0
433c506a872SMatthew G. Knepley static PetscErrorCode DMPlexCopyOverlapLabels(DM dm, DM ndm)
434c506a872SMatthew G. Knepley {
435c506a872SMatthew G. Knepley   DM_Plex *mesh  = (DM_Plex *) dm->data;
436c506a872SMatthew G. Knepley   DM_Plex *nmesh = (DM_Plex *) ndm->data;
437c506a872SMatthew G. Knepley 
438c506a872SMatthew G. Knepley   PetscFunctionBegin;
439c506a872SMatthew G. Knepley   if (mesh->numOvLabels) {
440c506a872SMatthew G. Knepley     const char *name;
441c506a872SMatthew G. Knepley     PetscInt    l;
442c506a872SMatthew G. Knepley 
443c506a872SMatthew G. Knepley     nmesh->numOvLabels = mesh->numOvLabels;
444c506a872SMatthew G. Knepley     for (l = 0; l < mesh->numOvLabels; ++l) {
445c506a872SMatthew G. Knepley       PetscCall(PetscObjectGetName((PetscObject) mesh->ovLabels[l], &name));
446c506a872SMatthew G. Knepley       PetscCall(DMGetLabel(ndm, name, &nmesh->ovLabels[l]));
447c506a872SMatthew G. Knepley       nmesh->ovValues[l] = mesh->ovValues[l];
448c506a872SMatthew G. Knepley     }
449c506a872SMatthew G. Knepley     PetscCall(PetscObjectGetName((PetscObject) mesh->ovExLabel, &name));
450c506a872SMatthew G. Knepley     PetscCall(DMGetLabel(ndm, name, &nmesh->ovExLabel));
451c506a872SMatthew G. Knepley     nmesh->ovExValue = mesh->ovExValue;
452c506a872SMatthew G. Knepley   }
453c506a872SMatthew G. Knepley   PetscFunctionReturn(0);
454c506a872SMatthew G. Knepley }
455c506a872SMatthew G. Knepley #endif
456c506a872SMatthew G. Knepley 
457278397a0SMatthew G. Knepley /*@C
458c506a872SMatthew G. Knepley   DMPlexCreateOverlapLabel - Compute a label indicating what overlap points should be sent to new processes
459b0a623aaSMatthew G. Knepley 
460d083f849SBarry Smith   Collective on dm
461b0a623aaSMatthew G. Knepley 
462b0a623aaSMatthew G. Knepley   Input Parameters:
463b0a623aaSMatthew G. Knepley + dm          - The DM
46424d039d7SMichael Lange . levels      - Number of overlap levels
465b0a623aaSMatthew G. Knepley . rootSection - The number of leaves for a given root point
466b0a623aaSMatthew G. Knepley . rootrank    - The rank of each edge into the root point
467b0a623aaSMatthew G. Knepley . leafSection - The number of processes sharing a given leaf point
468b0a623aaSMatthew G. Knepley - leafrank    - The rank of each process sharing a leaf point
469b0a623aaSMatthew G. Knepley 
470064ec1f3Sprj-   Output Parameter:
471b4ec6ac8SBarry Smith . ovLabel     - DMLabel containing remote overlap contributions as point/rank pairings
472b0a623aaSMatthew G. Knepley 
473b0a623aaSMatthew G. Knepley   Level: developer
474b0a623aaSMatthew G. Knepley 
475c506a872SMatthew G. Knepley .seealso: `DMPlexCreateOverlapLabelFromLabels()`, `DMPlexGetAdjacency()`, `DMPlexDistributeOwnership()`, `DMPlexDistribute()`
476b0a623aaSMatthew G. Knepley @*/
4779371c9d4SSatish Balay PetscErrorCode DMPlexCreateOverlapLabel(DM dm, PetscInt levels, PetscSection rootSection, IS rootrank, PetscSection leafSection, IS leafrank, DMLabel *ovLabel) {
478e540f424SMichael Lange   MPI_Comm           comm;
479b0a623aaSMatthew G. Knepley   DMLabel            ovAdjByRank; /* A DMLabel containing all points adjacent to shared points, separated by rank (value in label) */
480874ddda9SLisandro Dalcin   PetscSF            sfPoint;
481b0a623aaSMatthew G. Knepley   const PetscSFNode *remote;
482b0a623aaSMatthew G. Knepley   const PetscInt    *local;
4831fd9873aSMichael Lange   const PetscInt    *nrank, *rrank;
484b0a623aaSMatthew G. Knepley   PetscInt          *adj = NULL;
4851fd9873aSMichael Lange   PetscInt           pStart, pEnd, p, sStart, sEnd, nleaves, l;
4869852e123SBarry Smith   PetscMPIInt        rank, size;
48731bc6364SLisandro Dalcin   PetscBool          flg;
488b0a623aaSMatthew G. Knepley 
489b0a623aaSMatthew G. Knepley   PetscFunctionBegin;
4906ba1a4c7SVaclav Hapla   *ovLabel = NULL;
4919566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)dm, &comm));
4929566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
4939566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(comm, &rank));
4946ba1a4c7SVaclav Hapla   if (size == 1) PetscFunctionReturn(0);
4959566063dSJacob Faibussowitsch   PetscCall(DMGetPointSF(dm, &sfPoint));
4969566063dSJacob Faibussowitsch   PetscCall(DMPlexGetChart(dm, &pStart, &pEnd));
497d1674c6dSMatthew Knepley   if (!levels) {
498d1674c6dSMatthew Knepley     /* Add owned points */
4999566063dSJacob Faibussowitsch     PetscCall(DMLabelCreate(PETSC_COMM_SELF, "Overlap label", ovLabel));
5009566063dSJacob Faibussowitsch     for (p = pStart; p < pEnd; ++p) PetscCall(DMLabelSetValue(*ovLabel, p, rank));
501d1674c6dSMatthew Knepley     PetscFunctionReturn(0);
502d1674c6dSMatthew Knepley   }
5039566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetChart(leafSection, &sStart, &sEnd));
5049566063dSJacob Faibussowitsch   PetscCall(PetscSFGetGraph(sfPoint, NULL, &nleaves, &local, &remote));
5059566063dSJacob Faibussowitsch   PetscCall(DMLabelCreate(PETSC_COMM_SELF, "Overlap adjacency", &ovAdjByRank));
506b0a623aaSMatthew G. Knepley   /* Handle leaves: shared with the root point */
507b0a623aaSMatthew G. Knepley   for (l = 0; l < nleaves; ++l) {
508b0a623aaSMatthew G. Knepley     PetscInt adjSize = PETSC_DETERMINE, a;
509b0a623aaSMatthew G. Knepley 
5109566063dSJacob Faibussowitsch     PetscCall(DMPlexGetAdjacency(dm, local ? local[l] : l, &adjSize, &adj));
5119566063dSJacob Faibussowitsch     for (a = 0; a < adjSize; ++a) PetscCall(DMLabelSetValue(ovAdjByRank, adj[a], remote[l].rank));
512b0a623aaSMatthew G. Knepley   }
5139566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(rootrank, &rrank));
5149566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(leafrank, &nrank));
515b0a623aaSMatthew G. Knepley   /* Handle roots */
516b0a623aaSMatthew G. Knepley   for (p = pStart; p < pEnd; ++p) {
517b0a623aaSMatthew G. Knepley     PetscInt adjSize = PETSC_DETERMINE, neighbors = 0, noff, n, a;
518b0a623aaSMatthew G. Knepley 
519b0a623aaSMatthew G. Knepley     if ((p >= sStart) && (p < sEnd)) {
520b0a623aaSMatthew G. Knepley       /* Some leaves share a root with other leaves on different processes */
5219566063dSJacob Faibussowitsch       PetscCall(PetscSectionGetDof(leafSection, p, &neighbors));
522b0a623aaSMatthew G. Knepley       if (neighbors) {
5239566063dSJacob Faibussowitsch         PetscCall(PetscSectionGetOffset(leafSection, p, &noff));
5249566063dSJacob Faibussowitsch         PetscCall(DMPlexGetAdjacency(dm, p, &adjSize, &adj));
525b0a623aaSMatthew G. Knepley         for (n = 0; n < neighbors; ++n) {
526b0a623aaSMatthew G. Knepley           const PetscInt remoteRank = nrank[noff + n];
527b0a623aaSMatthew G. Knepley 
528b0a623aaSMatthew G. Knepley           if (remoteRank == rank) continue;
5299566063dSJacob Faibussowitsch           for (a = 0; a < adjSize; ++a) PetscCall(DMLabelSetValue(ovAdjByRank, adj[a], remoteRank));
530b0a623aaSMatthew G. Knepley         }
531b0a623aaSMatthew G. Knepley       }
532b0a623aaSMatthew G. Knepley     }
533b0a623aaSMatthew G. Knepley     /* Roots are shared with leaves */
5349566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetDof(rootSection, p, &neighbors));
535b0a623aaSMatthew G. Knepley     if (!neighbors) continue;
5369566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetOffset(rootSection, p, &noff));
5379566063dSJacob Faibussowitsch     PetscCall(DMPlexGetAdjacency(dm, p, &adjSize, &adj));
538b0a623aaSMatthew G. Knepley     for (n = 0; n < neighbors; ++n) {
539b0a623aaSMatthew G. Knepley       const PetscInt remoteRank = rrank[noff + n];
540b0a623aaSMatthew G. Knepley 
541b0a623aaSMatthew G. Knepley       if (remoteRank == rank) continue;
5429566063dSJacob Faibussowitsch       for (a = 0; a < adjSize; ++a) PetscCall(DMLabelSetValue(ovAdjByRank, adj[a], remoteRank));
543b0a623aaSMatthew G. Knepley     }
544b0a623aaSMatthew G. Knepley   }
5459566063dSJacob Faibussowitsch   PetscCall(PetscFree(adj));
5469566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(rootrank, &rrank));
5479566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(leafrank, &nrank));
54824d039d7SMichael Lange   /* Add additional overlap levels */
549be200f8dSMichael Lange   for (l = 1; l < levels; l++) {
550be200f8dSMichael Lange     /* Propagate point donations over SF to capture remote connections */
5519566063dSJacob Faibussowitsch     PetscCall(DMPlexPartitionLabelPropagate(dm, ovAdjByRank));
552be200f8dSMichael Lange     /* Add next level of point donations to the label */
5539566063dSJacob Faibussowitsch     PetscCall(DMPlexPartitionLabelAdjacency(dm, ovAdjByRank));
554be200f8dSMichael Lange   }
55526a7d390SMatthew G. Knepley   /* We require the closure in the overlap */
5569566063dSJacob Faibussowitsch   PetscCall(DMPlexPartitionLabelClosure(dm, ovAdjByRank));
5579566063dSJacob Faibussowitsch   PetscCall(PetscOptionsHasName(((PetscObject)dm)->options, ((PetscObject)dm)->prefix, "-overlap_view", &flg));
558e540f424SMichael Lange   if (flg) {
559825f8a23SLisandro Dalcin     PetscViewer viewer;
5609566063dSJacob Faibussowitsch     PetscCall(PetscViewerASCIIGetStdout(PetscObjectComm((PetscObject)dm), &viewer));
5619566063dSJacob Faibussowitsch     PetscCall(DMLabelView(ovAdjByRank, viewer));
562b0a623aaSMatthew G. Knepley   }
563874ddda9SLisandro Dalcin   /* Invert sender to receiver label */
5649566063dSJacob Faibussowitsch   PetscCall(DMLabelCreate(PETSC_COMM_SELF, "Overlap label", ovLabel));
5659566063dSJacob Faibussowitsch   PetscCall(DMPlexPartitionLabelInvert(dm, ovAdjByRank, NULL, *ovLabel));
566a9f1d5b2SMichael Lange   /* Add owned points, except for shared local points */
5679566063dSJacob Faibussowitsch   for (p = pStart; p < pEnd; ++p) PetscCall(DMLabelSetValue(*ovLabel, p, rank));
568e540f424SMichael Lange   for (l = 0; l < nleaves; ++l) {
5699566063dSJacob Faibussowitsch     PetscCall(DMLabelClearValue(*ovLabel, local[l], rank));
5709566063dSJacob Faibussowitsch     PetscCall(DMLabelSetValue(*ovLabel, remote[l].index, remote[l].rank));
571e540f424SMichael Lange   }
572e540f424SMichael Lange   /* Clean up */
5739566063dSJacob Faibussowitsch   PetscCall(DMLabelDestroy(&ovAdjByRank));
574b0a623aaSMatthew G. Knepley   PetscFunctionReturn(0);
575b0a623aaSMatthew G. Knepley }
57670034214SMatthew G. Knepley 
5779371c9d4SSatish Balay static PetscErrorCode HandlePoint_Private(DM dm, PetscInt p, PetscSection section, const PetscInt ranks[], PetscInt numExLabels, const DMLabel exLabel[], const PetscInt exValue[], DMLabel ovAdjByRank) {
578c506a872SMatthew G. Knepley   PetscInt neighbors, el;
579c506a872SMatthew G. Knepley 
580c506a872SMatthew G. Knepley   PetscFunctionBegin;
581c506a872SMatthew G. Knepley   PetscCall(PetscSectionGetDof(section, p, &neighbors));
582c506a872SMatthew G. Knepley   if (neighbors) {
583c506a872SMatthew G. Knepley     PetscInt   *adj     = NULL;
584c506a872SMatthew G. Knepley     PetscInt    adjSize = PETSC_DETERMINE, noff, n, a;
585c506a872SMatthew G. Knepley     PetscMPIInt rank;
586c506a872SMatthew G. Knepley 
587c506a872SMatthew G. Knepley     PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)dm), &rank));
588c506a872SMatthew G. Knepley     PetscCall(PetscSectionGetOffset(section, p, &noff));
589c506a872SMatthew G. Knepley     PetscCall(DMPlexGetAdjacency(dm, p, &adjSize, &adj));
590c506a872SMatthew G. Knepley     for (n = 0; n < neighbors; ++n) {
591c506a872SMatthew G. Knepley       const PetscInt remoteRank = ranks[noff + n];
592c506a872SMatthew G. Knepley 
593c506a872SMatthew G. Knepley       if (remoteRank == rank) continue;
594c506a872SMatthew G. Knepley       for (a = 0; a < adjSize; ++a) {
595c506a872SMatthew G. Knepley         PetscBool insert = PETSC_TRUE;
596c506a872SMatthew G. Knepley 
597c506a872SMatthew G. Knepley         for (el = 0; el < numExLabels; ++el) {
598c506a872SMatthew G. Knepley           PetscInt exVal;
599c506a872SMatthew G. Knepley           PetscCall(DMLabelGetValue(exLabel[el], adj[a], &exVal));
6009371c9d4SSatish Balay           if (exVal == exValue[el]) {
6019371c9d4SSatish Balay             insert = PETSC_FALSE;
6029371c9d4SSatish Balay             break;
6039371c9d4SSatish Balay           }
604c506a872SMatthew G. Knepley         }
605c506a872SMatthew G. Knepley         if (insert) PetscCall(DMLabelSetValue(ovAdjByRank, adj[a], remoteRank));
606c506a872SMatthew G. Knepley       }
607c506a872SMatthew G. Knepley     }
608c506a872SMatthew G. Knepley   }
609c506a872SMatthew G. Knepley   PetscFunctionReturn(0);
610c506a872SMatthew G. Knepley }
611c506a872SMatthew G. Knepley 
612c506a872SMatthew G. Knepley /*@C
613c506a872SMatthew G. Knepley   DMPlexCreateOverlapLabelFromLabels - Compute a label indicating what overlap points should be sent to new processes
614c506a872SMatthew G. Knepley 
615c506a872SMatthew G. Knepley   Collective on dm
616c506a872SMatthew G. Knepley 
617c506a872SMatthew G. Knepley   Input Parameters:
618c506a872SMatthew G. Knepley + dm          - The DM
619c506a872SMatthew G. Knepley . numLabels   - The number of labels to draw candidate points from
620c506a872SMatthew G. Knepley . label       - An array of labels containing candidate points
621c506a872SMatthew G. Knepley . value       - An array of label values marking the candidate points
622c506a872SMatthew G. Knepley . numExLabels - The number of labels to use for exclusion
623c506a872SMatthew G. Knepley . exLabel     - An array of labels indicating points to be excluded, or NULL
624c506a872SMatthew G. Knepley . exValue     - An array of label values to be excluded, or NULL
625c506a872SMatthew G. Knepley . rootSection - The number of leaves for a given root point
626c506a872SMatthew G. Knepley . rootrank    - The rank of each edge into the root point
627c506a872SMatthew G. Knepley . leafSection - The number of processes sharing a given leaf point
628c506a872SMatthew G. Knepley - leafrank    - The rank of each process sharing a leaf point
629c506a872SMatthew G. Knepley 
630c506a872SMatthew G. Knepley   Output Parameter:
631c506a872SMatthew G. Knepley . ovLabel     - DMLabel containing remote overlap contributions as point/rank pairings
632c506a872SMatthew G. Knepley 
633c506a872SMatthew G. Knepley   Note:
634c506a872SMatthew G. Knepley   The candidate points are only added to the overlap if they are adjacent to a shared point
635c506a872SMatthew G. Knepley 
636c506a872SMatthew G. Knepley   Level: developer
637c506a872SMatthew G. Knepley 
638c506a872SMatthew G. Knepley .seealso: `DMPlexCreateOverlapLabel()`, `DMPlexGetAdjacency()`, `DMPlexDistributeOwnership()`, `DMPlexDistribute()`
639c506a872SMatthew G. Knepley @*/
6409371c9d4SSatish Balay PetscErrorCode DMPlexCreateOverlapLabelFromLabels(DM dm, PetscInt numLabels, const DMLabel label[], const PetscInt value[], PetscInt numExLabels, const DMLabel exLabel[], const PetscInt exValue[], PetscSection rootSection, IS rootrank, PetscSection leafSection, IS leafrank, DMLabel *ovLabel) {
641c506a872SMatthew G. Knepley   MPI_Comm           comm;
642c506a872SMatthew G. Knepley   DMLabel            ovAdjByRank; /* A DMLabel containing all points adjacent to shared points, separated by rank (value in label) */
643c506a872SMatthew G. Knepley   PetscSF            sfPoint;
644c506a872SMatthew G. Knepley   const PetscSFNode *remote;
645c506a872SMatthew G. Knepley   const PetscInt    *local;
646c506a872SMatthew G. Knepley   const PetscInt    *nrank, *rrank;
647c506a872SMatthew G. Knepley   PetscInt          *adj = NULL;
648c506a872SMatthew G. Knepley   PetscInt           pStart, pEnd, p, sStart, sEnd, nleaves, l, el;
649c506a872SMatthew G. Knepley   PetscMPIInt        rank, size;
650c506a872SMatthew G. Knepley   PetscBool          flg;
651c506a872SMatthew G. Knepley 
652c506a872SMatthew G. Knepley   PetscFunctionBegin;
653c506a872SMatthew G. Knepley   *ovLabel = NULL;
654c506a872SMatthew G. Knepley   PetscCall(PetscObjectGetComm((PetscObject)dm, &comm));
655c506a872SMatthew G. Knepley   PetscCallMPI(MPI_Comm_size(comm, &size));
656c506a872SMatthew G. Knepley   PetscCallMPI(MPI_Comm_rank(comm, &rank));
657c506a872SMatthew G. Knepley   if (size == 1) PetscFunctionReturn(0);
658c506a872SMatthew G. Knepley   PetscCall(DMGetPointSF(dm, &sfPoint));
659c506a872SMatthew G. Knepley   PetscCall(DMPlexGetChart(dm, &pStart, &pEnd));
660c506a872SMatthew G. Knepley   PetscCall(PetscSectionGetChart(leafSection, &sStart, &sEnd));
661c506a872SMatthew G. Knepley   PetscCall(PetscSFGetGraph(sfPoint, NULL, &nleaves, &local, &remote));
662c506a872SMatthew G. Knepley   PetscCall(DMLabelCreate(PETSC_COMM_SELF, "Overlap adjacency", &ovAdjByRank));
663c506a872SMatthew G. Knepley   PetscCall(ISGetIndices(rootrank, &rrank));
664c506a872SMatthew G. Knepley   PetscCall(ISGetIndices(leafrank, &nrank));
665c506a872SMatthew G. Knepley   for (l = 0; l < numLabels; ++l) {
666c506a872SMatthew G. Knepley     IS              valIS;
667c506a872SMatthew G. Knepley     const PetscInt *points;
668c506a872SMatthew G. Knepley     PetscInt        n;
669c506a872SMatthew G. Knepley 
670c506a872SMatthew G. Knepley     PetscCall(DMLabelGetStratumIS(label[l], value[l], &valIS));
671c506a872SMatthew G. Knepley     if (!valIS) continue;
672c506a872SMatthew G. Knepley     PetscCall(ISGetIndices(valIS, &points));
673c506a872SMatthew G. Knepley     PetscCall(ISGetLocalSize(valIS, &n));
674c506a872SMatthew G. Knepley     for (PetscInt i = 0; i < n; ++i) {
675c506a872SMatthew G. Knepley       const PetscInt p = points[i];
676c506a872SMatthew G. Knepley 
677c506a872SMatthew G. Knepley       if ((p >= sStart) && (p < sEnd)) {
678c506a872SMatthew G. Knepley         PetscInt loc, adjSize = PETSC_DETERMINE;
679c506a872SMatthew G. Knepley 
680c506a872SMatthew G. Knepley         /* Handle leaves: shared with the root point */
681c506a872SMatthew G. Knepley         if (local) PetscCall(PetscFindInt(p, nleaves, local, &loc));
682c506a872SMatthew G. Knepley         else loc = (p >= 0 && p < nleaves) ? p : -1;
683c506a872SMatthew G. Knepley         if (loc >= 0) {
684c506a872SMatthew G. Knepley           const PetscInt remoteRank = remote[loc].rank;
685c506a872SMatthew G. Knepley 
686c506a872SMatthew G. Knepley           PetscCall(DMPlexGetAdjacency(dm, p, &adjSize, &adj));
687c506a872SMatthew G. Knepley           for (PetscInt a = 0; a < adjSize; ++a) {
688c506a872SMatthew G. Knepley             PetscBool insert = PETSC_TRUE;
689c506a872SMatthew G. Knepley 
690c506a872SMatthew G. Knepley             for (el = 0; el < numExLabels; ++el) {
691c506a872SMatthew G. Knepley               PetscInt exVal;
692c506a872SMatthew G. Knepley               PetscCall(DMLabelGetValue(exLabel[el], adj[a], &exVal));
6939371c9d4SSatish Balay               if (exVal == exValue[el]) {
6949371c9d4SSatish Balay                 insert = PETSC_FALSE;
6959371c9d4SSatish Balay                 break;
6969371c9d4SSatish Balay               }
697c506a872SMatthew G. Knepley             }
698c506a872SMatthew G. Knepley             if (insert) PetscCall(DMLabelSetValue(ovAdjByRank, adj[a], remoteRank));
699c506a872SMatthew G. Knepley           }
700c506a872SMatthew G. Knepley         }
701c506a872SMatthew G. Knepley         /* Some leaves share a root with other leaves on different processes */
702c506a872SMatthew G. Knepley         HandlePoint_Private(dm, p, leafSection, nrank, numExLabels, exLabel, exValue, ovAdjByRank);
703c506a872SMatthew G. Knepley       }
704c506a872SMatthew G. Knepley       /* Roots are shared with leaves */
705c506a872SMatthew G. Knepley       HandlePoint_Private(dm, p, rootSection, rrank, numExLabels, exLabel, exValue, ovAdjByRank);
706c506a872SMatthew G. Knepley     }
707c506a872SMatthew G. Knepley     PetscCall(ISRestoreIndices(valIS, &points));
708c506a872SMatthew G. Knepley     PetscCall(ISDestroy(&valIS));
709c506a872SMatthew G. Knepley   }
710c506a872SMatthew G. Knepley   PetscCall(PetscFree(adj));
711c506a872SMatthew G. Knepley   PetscCall(ISRestoreIndices(rootrank, &rrank));
712c506a872SMatthew G. Knepley   PetscCall(ISRestoreIndices(leafrank, &nrank));
713c506a872SMatthew G. Knepley   /* We require the closure in the overlap */
714c506a872SMatthew G. Knepley   PetscCall(DMPlexPartitionLabelClosure(dm, ovAdjByRank));
715c506a872SMatthew G. Knepley   PetscCall(PetscOptionsHasName(((PetscObject)dm)->options, ((PetscObject)dm)->prefix, "-overlap_view", &flg));
716c506a872SMatthew G. Knepley   if (flg) {
717c506a872SMatthew G. Knepley     PetscViewer viewer;
718c506a872SMatthew G. Knepley     PetscCall(PetscViewerASCIIGetStdout(PetscObjectComm((PetscObject)dm), &viewer));
719c506a872SMatthew G. Knepley     PetscCall(DMLabelView(ovAdjByRank, viewer));
720c506a872SMatthew G. Knepley   }
721c506a872SMatthew G. Knepley   /* Invert sender to receiver label */
722c506a872SMatthew G. Knepley   PetscCall(DMLabelCreate(PETSC_COMM_SELF, "Overlap label", ovLabel));
723c506a872SMatthew G. Knepley   PetscCall(DMPlexPartitionLabelInvert(dm, ovAdjByRank, NULL, *ovLabel));
724c506a872SMatthew G. Knepley   /* Add owned points, except for shared local points */
725c506a872SMatthew G. Knepley   for (p = pStart; p < pEnd; ++p) PetscCall(DMLabelSetValue(*ovLabel, p, rank));
726c506a872SMatthew G. Knepley   for (l = 0; l < nleaves; ++l) {
727c506a872SMatthew G. Knepley     PetscCall(DMLabelClearValue(*ovLabel, local[l], rank));
728c506a872SMatthew G. Knepley     PetscCall(DMLabelSetValue(*ovLabel, remote[l].index, remote[l].rank));
729c506a872SMatthew G. Knepley   }
730c506a872SMatthew G. Knepley   /* Clean up */
731c506a872SMatthew G. Knepley   PetscCall(DMLabelDestroy(&ovAdjByRank));
732c506a872SMatthew G. Knepley   PetscFunctionReturn(0);
733c506a872SMatthew G. Knepley }
734c506a872SMatthew G. Knepley 
73524cc2ca5SMatthew G. Knepley /*@C
73624cc2ca5SMatthew G. Knepley   DMPlexCreateOverlapMigrationSF - Create an SF describing the new mesh distribution to make the overlap described by the input SF
73724cc2ca5SMatthew G. Knepley 
738d083f849SBarry Smith   Collective on dm
73924cc2ca5SMatthew G. Knepley 
74024cc2ca5SMatthew G. Knepley   Input Parameters:
74124cc2ca5SMatthew G. Knepley + dm          - The DM
74224cc2ca5SMatthew G. Knepley - overlapSF   - The SF mapping ghost points in overlap to owner points on other processes
74324cc2ca5SMatthew G. Knepley 
744064ec1f3Sprj-   Output Parameter:
745a2b725a8SWilliam Gropp . migrationSF - An SF that maps original points in old locations to points in new locations
74624cc2ca5SMatthew G. Knepley 
74724cc2ca5SMatthew G. Knepley   Level: developer
74824cc2ca5SMatthew G. Knepley 
749db781477SPatrick Sanan .seealso: `DMPlexCreateOverlapLabel()`, `DMPlexDistributeOverlap()`, `DMPlexDistribute()`
75024cc2ca5SMatthew G. Knepley @*/
7519371c9d4SSatish Balay PetscErrorCode DMPlexCreateOverlapMigrationSF(DM dm, PetscSF overlapSF, PetscSF *migrationSF) {
75246f9b1c3SMichael Lange   MPI_Comm           comm;
7539852e123SBarry Smith   PetscMPIInt        rank, size;
75446f9b1c3SMichael Lange   PetscInt           d, dim, p, pStart, pEnd, nroots, nleaves, newLeaves, point, numSharedPoints;
75546f9b1c3SMichael Lange   PetscInt          *pointDepths, *remoteDepths, *ilocal;
75646f9b1c3SMichael Lange   PetscInt          *depthRecv, *depthShift, *depthIdx;
75746f9b1c3SMichael Lange   PetscSFNode       *iremote;
75846f9b1c3SMichael Lange   PetscSF            pointSF;
75946f9b1c3SMichael Lange   const PetscInt    *sharedLocal;
76046f9b1c3SMichael Lange   const PetscSFNode *overlapRemote, *sharedRemote;
76146f9b1c3SMichael Lange 
76246f9b1c3SMichael Lange   PetscFunctionBegin;
76346f9b1c3SMichael Lange   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
7649566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)dm, &comm));
7659566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(comm, &rank));
7669566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
7679566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dm, &dim));
76846f9b1c3SMichael Lange 
76946f9b1c3SMichael Lange   /* Before building the migration SF we need to know the new stratum offsets */
7709566063dSJacob Faibussowitsch   PetscCall(PetscSFGetGraph(overlapSF, &nroots, &nleaves, NULL, &overlapRemote));
7719566063dSJacob Faibussowitsch   PetscCall(PetscMalloc2(nroots, &pointDepths, nleaves, &remoteDepths));
77246f9b1c3SMichael Lange   for (d = 0; d < dim + 1; d++) {
7739566063dSJacob Faibussowitsch     PetscCall(DMPlexGetDepthStratum(dm, d, &pStart, &pEnd));
77446f9b1c3SMichael Lange     for (p = pStart; p < pEnd; p++) pointDepths[p] = d;
77546f9b1c3SMichael Lange   }
77646f9b1c3SMichael Lange   for (p = 0; p < nleaves; p++) remoteDepths[p] = -1;
7779566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastBegin(overlapSF, MPIU_INT, pointDepths, remoteDepths, MPI_REPLACE));
7789566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastEnd(overlapSF, MPIU_INT, pointDepths, remoteDepths, MPI_REPLACE));
77946f9b1c3SMichael Lange 
7802d4ee042Sprj-   /* Count received points in each stratum and compute the internal strata shift */
7819566063dSJacob Faibussowitsch   PetscCall(PetscMalloc3(dim + 1, &depthRecv, dim + 1, &depthShift, dim + 1, &depthIdx));
78246f9b1c3SMichael Lange   for (d = 0; d < dim + 1; d++) depthRecv[d] = 0;
78346f9b1c3SMichael Lange   for (p = 0; p < nleaves; p++) depthRecv[remoteDepths[p]]++;
78446f9b1c3SMichael Lange   depthShift[dim] = 0;
78546f9b1c3SMichael Lange   for (d = 0; d < dim; d++) depthShift[d] = depthRecv[dim];
78646f9b1c3SMichael Lange   for (d = 1; d < dim; d++) depthShift[d] += depthRecv[0];
78746f9b1c3SMichael Lange   for (d = dim - 2; d > 0; d--) depthShift[d] += depthRecv[d + 1];
78846f9b1c3SMichael Lange   for (d = 0; d < dim + 1; d++) {
7899566063dSJacob Faibussowitsch     PetscCall(DMPlexGetDepthStratum(dm, d, &pStart, &pEnd));
79046f9b1c3SMichael Lange     depthIdx[d] = pStart + depthShift[d];
79146f9b1c3SMichael Lange   }
79246f9b1c3SMichael Lange 
79346f9b1c3SMichael Lange   /* Form the overlap SF build an SF that describes the full overlap migration SF */
7949566063dSJacob Faibussowitsch   PetscCall(DMPlexGetChart(dm, &pStart, &pEnd));
79546f9b1c3SMichael Lange   newLeaves = pEnd - pStart + nleaves;
7969566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(newLeaves, &ilocal));
7979566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(newLeaves, &iremote));
79846f9b1c3SMichael Lange   /* First map local points to themselves */
79946f9b1c3SMichael Lange   for (d = 0; d < dim + 1; d++) {
8009566063dSJacob Faibussowitsch     PetscCall(DMPlexGetDepthStratum(dm, d, &pStart, &pEnd));
80146f9b1c3SMichael Lange     for (p = pStart; p < pEnd; p++) {
80246f9b1c3SMichael Lange       point                = p + depthShift[d];
80346f9b1c3SMichael Lange       ilocal[point]        = point;
80446f9b1c3SMichael Lange       iremote[point].index = p;
80546f9b1c3SMichael Lange       iremote[point].rank  = rank;
80646f9b1c3SMichael Lange       depthIdx[d]++;
80746f9b1c3SMichael Lange     }
80846f9b1c3SMichael Lange   }
80946f9b1c3SMichael Lange 
81046f9b1c3SMichael Lange   /* Add in the remote roots for currently shared points */
8119566063dSJacob Faibussowitsch   PetscCall(DMGetPointSF(dm, &pointSF));
8129566063dSJacob Faibussowitsch   PetscCall(PetscSFGetGraph(pointSF, NULL, &numSharedPoints, &sharedLocal, &sharedRemote));
81346f9b1c3SMichael Lange   for (d = 0; d < dim + 1; d++) {
8149566063dSJacob Faibussowitsch     PetscCall(DMPlexGetDepthStratum(dm, d, &pStart, &pEnd));
81546f9b1c3SMichael Lange     for (p = 0; p < numSharedPoints; p++) {
81646f9b1c3SMichael Lange       if (pStart <= sharedLocal[p] && sharedLocal[p] < pEnd) {
81746f9b1c3SMichael Lange         point                = sharedLocal[p] + depthShift[d];
81846f9b1c3SMichael Lange         iremote[point].index = sharedRemote[p].index;
81946f9b1c3SMichael Lange         iremote[point].rank  = sharedRemote[p].rank;
82046f9b1c3SMichael Lange       }
82146f9b1c3SMichael Lange     }
82246f9b1c3SMichael Lange   }
82346f9b1c3SMichael Lange 
82446f9b1c3SMichael Lange   /* Now add the incoming overlap points */
82546f9b1c3SMichael Lange   for (p = 0; p < nleaves; p++) {
82646f9b1c3SMichael Lange     point                = depthIdx[remoteDepths[p]];
82746f9b1c3SMichael Lange     ilocal[point]        = point;
82846f9b1c3SMichael Lange     iremote[point].index = overlapRemote[p].index;
82946f9b1c3SMichael Lange     iremote[point].rank  = overlapRemote[p].rank;
83046f9b1c3SMichael Lange     depthIdx[remoteDepths[p]]++;
83146f9b1c3SMichael Lange   }
8329566063dSJacob Faibussowitsch   PetscCall(PetscFree2(pointDepths, remoteDepths));
83346f9b1c3SMichael Lange 
8349566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(comm, migrationSF));
8359566063dSJacob Faibussowitsch   PetscCall(PetscObjectSetName((PetscObject)*migrationSF, "Overlap Migration SF"));
8369566063dSJacob Faibussowitsch   PetscCall(PetscSFSetFromOptions(*migrationSF));
8379566063dSJacob Faibussowitsch   PetscCall(DMPlexGetChart(dm, &pStart, &pEnd));
8389566063dSJacob Faibussowitsch   PetscCall(PetscSFSetGraph(*migrationSF, pEnd - pStart, newLeaves, ilocal, PETSC_OWN_POINTER, iremote, PETSC_OWN_POINTER));
83946f9b1c3SMichael Lange 
8409566063dSJacob Faibussowitsch   PetscCall(PetscFree3(depthRecv, depthShift, depthIdx));
84170034214SMatthew G. Knepley   PetscFunctionReturn(0);
84270034214SMatthew G. Knepley }
84370034214SMatthew G. Knepley 
844a9f1d5b2SMichael Lange /*@
845f0e73a3dSToby Isaac   DMPlexStratifyMigrationSF - Rearrange the leaves of a migration sf for stratification.
846a9f1d5b2SMichael Lange 
847064ec1f3Sprj-   Input Parameters:
848a9f1d5b2SMichael Lange + dm          - The DM
849a9f1d5b2SMichael Lange - sf          - A star forest with non-ordered leaves, usually defining a DM point migration
850a9f1d5b2SMichael Lange 
851a9f1d5b2SMichael Lange   Output Parameter:
852a9f1d5b2SMichael Lange . migrationSF - A star forest with added leaf indirection that ensures the resulting DM is stratified
853a9f1d5b2SMichael Lange 
854412e9a14SMatthew G. Knepley   Note:
855412e9a14SMatthew G. Knepley   This lexicographically sorts by (depth, cellType)
856412e9a14SMatthew G. Knepley 
857a9f1d5b2SMichael Lange   Level: developer
858a9f1d5b2SMichael Lange 
859db781477SPatrick Sanan .seealso: `DMPlexPartitionLabelCreateSF()`, `DMPlexDistribute()`, `DMPlexDistributeOverlap()`
860a9f1d5b2SMichael Lange @*/
8619371c9d4SSatish Balay PetscErrorCode DMPlexStratifyMigrationSF(DM dm, PetscSF sf, PetscSF *migrationSF) {
862a9f1d5b2SMichael Lange   MPI_Comm           comm;
8639852e123SBarry Smith   PetscMPIInt        rank, size;
864412e9a14SMatthew G. Knepley   PetscInt           d, ldepth, depth, dim, p, pStart, pEnd, nroots, nleaves;
865412e9a14SMatthew G. Knepley   PetscSFNode       *pointDepths, *remoteDepths;
866412e9a14SMatthew G. Knepley   PetscInt          *ilocal;
867a9f1d5b2SMichael Lange   PetscInt          *depthRecv, *depthShift, *depthIdx;
868412e9a14SMatthew G. Knepley   PetscInt          *ctRecv, *ctShift, *ctIdx;
869a9f1d5b2SMichael Lange   const PetscSFNode *iremote;
870a9f1d5b2SMichael Lange 
871a9f1d5b2SMichael Lange   PetscFunctionBegin;
872a9f1d5b2SMichael Lange   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
8739566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)dm, &comm));
8749566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(comm, &rank));
8759566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
8769566063dSJacob Faibussowitsch   PetscCall(DMPlexGetDepth(dm, &ldepth));
8779566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dm, &dim));
8781c2dc1cbSBarry Smith   PetscCall(MPIU_Allreduce(&ldepth, &depth, 1, MPIU_INT, MPI_MAX, comm));
87963a3b9bcSJacob Faibussowitsch   PetscCheck(!(ldepth >= 0) || !(depth != ldepth), PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Inconsistent Plex depth %" PetscInt_FMT " != %" PetscInt_FMT, ldepth, depth);
8809566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(DMPLEX_PartStratSF, dm, 0, 0, 0));
881a9f1d5b2SMichael Lange 
882a9f1d5b2SMichael Lange   /* Before building the migration SF we need to know the new stratum offsets */
8839566063dSJacob Faibussowitsch   PetscCall(PetscSFGetGraph(sf, &nroots, &nleaves, NULL, &iremote));
8849566063dSJacob Faibussowitsch   PetscCall(PetscMalloc2(nroots, &pointDepths, nleaves, &remoteDepths));
8857fab53ddSMatthew G. Knepley   for (d = 0; d < depth + 1; ++d) {
8869566063dSJacob Faibussowitsch     PetscCall(DMPlexGetDepthStratum(dm, d, &pStart, &pEnd));
887f0e73a3dSToby Isaac     for (p = pStart; p < pEnd; ++p) {
888412e9a14SMatthew G. Knepley       DMPolytopeType ct;
889f0e73a3dSToby Isaac 
8909566063dSJacob Faibussowitsch       PetscCall(DMPlexGetCellType(dm, p, &ct));
891412e9a14SMatthew G. Knepley       pointDepths[p].index = d;
892412e9a14SMatthew G. Knepley       pointDepths[p].rank  = ct;
893f0e73a3dSToby Isaac     }
894412e9a14SMatthew G. Knepley   }
8959371c9d4SSatish Balay   for (p = 0; p < nleaves; ++p) {
8969371c9d4SSatish Balay     remoteDepths[p].index = -1;
8979371c9d4SSatish Balay     remoteDepths[p].rank  = -1;
8989371c9d4SSatish Balay   }
8999566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastBegin(sf, MPIU_2INT, pointDepths, remoteDepths, MPI_REPLACE));
9009566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastEnd(sf, MPIU_2INT, pointDepths, remoteDepths, MPI_REPLACE));
901412e9a14SMatthew G. Knepley   /* Count received points in each stratum and compute the internal strata shift */
9029566063dSJacob Faibussowitsch   PetscCall(PetscCalloc6(depth + 1, &depthRecv, depth + 1, &depthShift, depth + 1, &depthIdx, DM_NUM_POLYTOPES, &ctRecv, DM_NUM_POLYTOPES, &ctShift, DM_NUM_POLYTOPES, &ctIdx));
903412e9a14SMatthew G. Knepley   for (p = 0; p < nleaves; ++p) {
904412e9a14SMatthew G. Knepley     if (remoteDepths[p].rank < 0) {
905412e9a14SMatthew G. Knepley       ++depthRecv[remoteDepths[p].index];
906412e9a14SMatthew G. Knepley     } else {
907412e9a14SMatthew G. Knepley       ++ctRecv[remoteDepths[p].rank];
908412e9a14SMatthew G. Knepley     }
909412e9a14SMatthew G. Knepley   }
910412e9a14SMatthew G. Knepley   {
911412e9a14SMatthew G. Knepley     PetscInt depths[4], dims[4], shift = 0, i, c;
912412e9a14SMatthew G. Knepley 
9138238f61eSMatthew G. Knepley     /* Cells (depth), Vertices (0), Faces (depth-1), Edges (1)
9148238f61eSMatthew G. Knepley          Consider DM_POLYTOPE_FV_GHOST and DM_POLYTOPE_INTERIOR_GHOST as cells
9158238f61eSMatthew G. Knepley      */
9169371c9d4SSatish Balay     depths[0] = depth;
9179371c9d4SSatish Balay     depths[1] = 0;
9189371c9d4SSatish Balay     depths[2] = depth - 1;
9199371c9d4SSatish Balay     depths[3] = 1;
9209371c9d4SSatish Balay     dims[0]   = dim;
9219371c9d4SSatish Balay     dims[1]   = 0;
9229371c9d4SSatish Balay     dims[2]   = dim - 1;
9239371c9d4SSatish Balay     dims[3]   = 1;
924412e9a14SMatthew G. Knepley     for (i = 0; i <= depth; ++i) {
925412e9a14SMatthew G. Knepley       const PetscInt dep = depths[i];
926412e9a14SMatthew G. Knepley       const PetscInt dim = dims[i];
927412e9a14SMatthew G. Knepley 
928412e9a14SMatthew G. Knepley       for (c = 0; c < DM_NUM_POLYTOPES; ++c) {
9298238f61eSMatthew G. Knepley         if (DMPolytopeTypeGetDim((DMPolytopeType)c) != dim && !(i == 0 && (c == DM_POLYTOPE_FV_GHOST || c == DM_POLYTOPE_INTERIOR_GHOST))) continue;
930412e9a14SMatthew G. Knepley         ctShift[c] = shift;
931412e9a14SMatthew G. Knepley         shift += ctRecv[c];
932412e9a14SMatthew G. Knepley       }
933412e9a14SMatthew G. Knepley       depthShift[dep] = shift;
934412e9a14SMatthew G. Knepley       shift += depthRecv[dep];
935412e9a14SMatthew G. Knepley     }
936412e9a14SMatthew G. Knepley     for (c = 0; c < DM_NUM_POLYTOPES; ++c) {
937412e9a14SMatthew G. Knepley       const PetscInt ctDim = DMPolytopeTypeGetDim((DMPolytopeType)c);
938412e9a14SMatthew G. Knepley 
9398238f61eSMatthew G. Knepley       if ((ctDim < 0 || ctDim > dim) && (c != DM_POLYTOPE_FV_GHOST && c != DM_POLYTOPE_INTERIOR_GHOST)) {
940412e9a14SMatthew G. Knepley         ctShift[c] = shift;
941412e9a14SMatthew G. Knepley         shift += ctRecv[c];
942412e9a14SMatthew G. Knepley       }
943412e9a14SMatthew G. Knepley     }
944412e9a14SMatthew G. Knepley   }
945a9f1d5b2SMichael Lange   /* Derive a new local permutation based on stratified indices */
9469566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(nleaves, &ilocal));
9477fab53ddSMatthew G. Knepley   for (p = 0; p < nleaves; ++p) {
948412e9a14SMatthew G. Knepley     const PetscInt       dep = remoteDepths[p].index;
949412e9a14SMatthew G. Knepley     const DMPolytopeType ct  = (DMPolytopeType)remoteDepths[p].rank;
9507fab53ddSMatthew G. Knepley 
951412e9a14SMatthew G. Knepley     if ((PetscInt)ct < 0) {
9527fab53ddSMatthew G. Knepley       ilocal[p] = depthShift[dep] + depthIdx[dep];
953412e9a14SMatthew G. Knepley       ++depthIdx[dep];
954412e9a14SMatthew G. Knepley     } else {
955412e9a14SMatthew G. Knepley       ilocal[p] = ctShift[ct] + ctIdx[ct];
956412e9a14SMatthew G. Knepley       ++ctIdx[ct];
957412e9a14SMatthew G. Knepley     }
958a9f1d5b2SMichael Lange   }
9599566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(comm, migrationSF));
9609566063dSJacob Faibussowitsch   PetscCall(PetscObjectSetName((PetscObject)*migrationSF, "Migration SF"));
9619566063dSJacob Faibussowitsch   PetscCall(PetscSFSetGraph(*migrationSF, nroots, nleaves, ilocal, PETSC_OWN_POINTER, (PetscSFNode *)iremote, PETSC_COPY_VALUES));
9629566063dSJacob Faibussowitsch   PetscCall(PetscFree2(pointDepths, remoteDepths));
9639566063dSJacob Faibussowitsch   PetscCall(PetscFree6(depthRecv, depthShift, depthIdx, ctRecv, ctShift, ctIdx));
9649566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(DMPLEX_PartStratSF, dm, 0, 0, 0));
965a9f1d5b2SMichael Lange   PetscFunctionReturn(0);
966a9f1d5b2SMichael Lange }
967a9f1d5b2SMichael Lange 
96870034214SMatthew G. Knepley /*@
96970034214SMatthew G. Knepley   DMPlexDistributeField - Distribute field data to match a given PetscSF, usually the SF from mesh distribution
97070034214SMatthew G. Knepley 
971d083f849SBarry Smith   Collective on dm
97270034214SMatthew G. Knepley 
97370034214SMatthew G. Knepley   Input Parameters:
97470034214SMatthew G. Knepley + dm - The DMPlex object
97570034214SMatthew G. Knepley . pointSF - The PetscSF describing the communication pattern
97670034214SMatthew G. Knepley . originalSection - The PetscSection for existing data layout
977cb15cd0eSMatthew G. Knepley - originalVec - The existing data in a local vector
97870034214SMatthew G. Knepley 
97970034214SMatthew G. Knepley   Output Parameters:
98070034214SMatthew G. Knepley + newSection - The PetscSF describing the new data layout
981cb15cd0eSMatthew G. Knepley - newVec - The new data in a local vector
98270034214SMatthew G. Knepley 
98370034214SMatthew G. Knepley   Level: developer
98470034214SMatthew G. Knepley 
985db781477SPatrick Sanan .seealso: `DMPlexDistribute()`, `DMPlexDistributeFieldIS()`, `DMPlexDistributeData()`
98670034214SMatthew G. Knepley @*/
9879371c9d4SSatish Balay PetscErrorCode DMPlexDistributeField(DM dm, PetscSF pointSF, PetscSection originalSection, Vec originalVec, PetscSection newSection, Vec newVec) {
98870034214SMatthew G. Knepley   PetscSF      fieldSF;
98970034214SMatthew G. Knepley   PetscInt    *remoteOffsets, fieldSize;
99070034214SMatthew G. Knepley   PetscScalar *originalValues, *newValues;
99170034214SMatthew G. Knepley 
99270034214SMatthew G. Knepley   PetscFunctionBegin;
9939566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(DMPLEX_DistributeField, dm, 0, 0, 0));
9949566063dSJacob Faibussowitsch   PetscCall(PetscSFDistributeSection(pointSF, originalSection, &remoteOffsets, newSection));
99570034214SMatthew G. Knepley 
9969566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetStorageSize(newSection, &fieldSize));
9979566063dSJacob Faibussowitsch   PetscCall(VecSetSizes(newVec, fieldSize, PETSC_DETERMINE));
9989566063dSJacob Faibussowitsch   PetscCall(VecSetType(newVec, dm->vectype));
99970034214SMatthew G. Knepley 
10009566063dSJacob Faibussowitsch   PetscCall(VecGetArray(originalVec, &originalValues));
10019566063dSJacob Faibussowitsch   PetscCall(VecGetArray(newVec, &newValues));
10029566063dSJacob Faibussowitsch   PetscCall(PetscSFCreateSectionSF(pointSF, originalSection, remoteOffsets, newSection, &fieldSF));
10039566063dSJacob Faibussowitsch   PetscCall(PetscFree(remoteOffsets));
10049566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastBegin(fieldSF, MPIU_SCALAR, originalValues, newValues, MPI_REPLACE));
10059566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastEnd(fieldSF, MPIU_SCALAR, originalValues, newValues, MPI_REPLACE));
10069566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&fieldSF));
10079566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(newVec, &newValues));
10089566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(originalVec, &originalValues));
10099566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(DMPLEX_DistributeField, dm, 0, 0, 0));
101070034214SMatthew G. Knepley   PetscFunctionReturn(0);
101170034214SMatthew G. Knepley }
101270034214SMatthew G. Knepley 
101370034214SMatthew G. Knepley /*@
101470034214SMatthew G. Knepley   DMPlexDistributeFieldIS - Distribute field data to match a given PetscSF, usually the SF from mesh distribution
101570034214SMatthew G. Knepley 
1016d083f849SBarry Smith   Collective on dm
101770034214SMatthew G. Knepley 
101870034214SMatthew G. Knepley   Input Parameters:
101970034214SMatthew G. Knepley + dm - The DMPlex object
102070034214SMatthew G. Knepley . pointSF - The PetscSF describing the communication pattern
102170034214SMatthew G. Knepley . originalSection - The PetscSection for existing data layout
102270034214SMatthew G. Knepley - originalIS - The existing data
102370034214SMatthew G. Knepley 
102470034214SMatthew G. Knepley   Output Parameters:
102570034214SMatthew G. Knepley + newSection - The PetscSF describing the new data layout
102670034214SMatthew G. Knepley - newIS - The new data
102770034214SMatthew G. Knepley 
102870034214SMatthew G. Knepley   Level: developer
102970034214SMatthew G. Knepley 
1030db781477SPatrick Sanan .seealso: `DMPlexDistribute()`, `DMPlexDistributeField()`, `DMPlexDistributeData()`
103170034214SMatthew G. Knepley @*/
10329371c9d4SSatish Balay PetscErrorCode DMPlexDistributeFieldIS(DM dm, PetscSF pointSF, PetscSection originalSection, IS originalIS, PetscSection newSection, IS *newIS) {
103370034214SMatthew G. Knepley   PetscSF         fieldSF;
103470034214SMatthew G. Knepley   PetscInt       *newValues, *remoteOffsets, fieldSize;
103570034214SMatthew G. Knepley   const PetscInt *originalValues;
103670034214SMatthew G. Knepley 
103770034214SMatthew G. Knepley   PetscFunctionBegin;
10389566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(DMPLEX_DistributeField, dm, 0, 0, 0));
10399566063dSJacob Faibussowitsch   PetscCall(PetscSFDistributeSection(pointSF, originalSection, &remoteOffsets, newSection));
104070034214SMatthew G. Knepley 
10419566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetStorageSize(newSection, &fieldSize));
10429566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(fieldSize, &newValues));
104370034214SMatthew G. Knepley 
10449566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(originalIS, &originalValues));
10459566063dSJacob Faibussowitsch   PetscCall(PetscSFCreateSectionSF(pointSF, originalSection, remoteOffsets, newSection, &fieldSF));
10469566063dSJacob Faibussowitsch   PetscCall(PetscFree(remoteOffsets));
10479566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastBegin(fieldSF, MPIU_INT, (PetscInt *)originalValues, newValues, MPI_REPLACE));
10489566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastEnd(fieldSF, MPIU_INT, (PetscInt *)originalValues, newValues, MPI_REPLACE));
10499566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&fieldSF));
10509566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(originalIS, &originalValues));
10519566063dSJacob Faibussowitsch   PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)pointSF), fieldSize, newValues, PETSC_OWN_POINTER, newIS));
10529566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(DMPLEX_DistributeField, dm, 0, 0, 0));
105370034214SMatthew G. Knepley   PetscFunctionReturn(0);
105470034214SMatthew G. Knepley }
105570034214SMatthew G. Knepley 
105670034214SMatthew G. Knepley /*@
105770034214SMatthew G. Knepley   DMPlexDistributeData - Distribute field data to match a given PetscSF, usually the SF from mesh distribution
105870034214SMatthew G. Knepley 
1059d083f849SBarry Smith   Collective on dm
106070034214SMatthew G. Knepley 
106170034214SMatthew G. Knepley   Input Parameters:
106270034214SMatthew G. Knepley + dm - The DMPlex object
106370034214SMatthew G. Knepley . pointSF - The PetscSF describing the communication pattern
106470034214SMatthew G. Knepley . originalSection - The PetscSection for existing data layout
106570034214SMatthew G. Knepley . datatype - The type of data
106670034214SMatthew G. Knepley - originalData - The existing data
106770034214SMatthew G. Knepley 
106870034214SMatthew G. Knepley   Output Parameters:
106970034214SMatthew G. Knepley + newSection - The PetscSection describing the new data layout
107070034214SMatthew G. Knepley - newData - The new data
107170034214SMatthew G. Knepley 
107270034214SMatthew G. Knepley   Level: developer
107370034214SMatthew G. Knepley 
1074db781477SPatrick Sanan .seealso: `DMPlexDistribute()`, `DMPlexDistributeField()`
107570034214SMatthew G. Knepley @*/
10769371c9d4SSatish Balay PetscErrorCode DMPlexDistributeData(DM dm, PetscSF pointSF, PetscSection originalSection, MPI_Datatype datatype, void *originalData, PetscSection newSection, void **newData) {
107770034214SMatthew G. Knepley   PetscSF     fieldSF;
107870034214SMatthew G. Knepley   PetscInt   *remoteOffsets, fieldSize;
107970034214SMatthew G. Knepley   PetscMPIInt dataSize;
108070034214SMatthew G. Knepley 
108170034214SMatthew G. Knepley   PetscFunctionBegin;
10829566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(DMPLEX_DistributeData, dm, 0, 0, 0));
10839566063dSJacob Faibussowitsch   PetscCall(PetscSFDistributeSection(pointSF, originalSection, &remoteOffsets, newSection));
108470034214SMatthew G. Knepley 
10859566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetStorageSize(newSection, &fieldSize));
10869566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Type_size(datatype, &dataSize));
10879566063dSJacob Faibussowitsch   PetscCall(PetscMalloc(fieldSize * dataSize, newData));
108870034214SMatthew G. Knepley 
10899566063dSJacob Faibussowitsch   PetscCall(PetscSFCreateSectionSF(pointSF, originalSection, remoteOffsets, newSection, &fieldSF));
10909566063dSJacob Faibussowitsch   PetscCall(PetscFree(remoteOffsets));
10919566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastBegin(fieldSF, datatype, originalData, *newData, MPI_REPLACE));
10929566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastEnd(fieldSF, datatype, originalData, *newData, MPI_REPLACE));
10939566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&fieldSF));
10949566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(DMPLEX_DistributeData, dm, 0, 0, 0));
109570034214SMatthew G. Knepley   PetscFunctionReturn(0);
109670034214SMatthew G. Knepley }
109770034214SMatthew G. Knepley 
10989371c9d4SSatish Balay static PetscErrorCode DMPlexDistributeCones(DM dm, PetscSF migrationSF, ISLocalToGlobalMapping original, ISLocalToGlobalMapping renumbering, DM dmParallel) {
1099cc71bff1SMichael Lange   DM_Plex     *pmesh = (DM_Plex *)(dmParallel)->data;
1100cc71bff1SMichael Lange   MPI_Comm     comm;
1101cc71bff1SMichael Lange   PetscSF      coneSF;
1102cc71bff1SMichael Lange   PetscSection originalConeSection, newConeSection;
1103ac04eaf7SToby Isaac   PetscInt    *remoteOffsets, *cones, *globCones, *newCones, newConesSize;
1104cc71bff1SMichael Lange   PetscBool    flg;
1105cc71bff1SMichael Lange 
1106cc71bff1SMichael Lange   PetscFunctionBegin;
1107cc71bff1SMichael Lange   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
11080c86c063SLisandro Dalcin   PetscValidHeaderSpecific(dmParallel, DM_CLASSID, 5);
11099566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(DMPLEX_DistributeCones, dm, 0, 0, 0));
1110cc71bff1SMichael Lange   /* Distribute cone section */
11119566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)dm, &comm));
11129566063dSJacob Faibussowitsch   PetscCall(DMPlexGetConeSection(dm, &originalConeSection));
11139566063dSJacob Faibussowitsch   PetscCall(DMPlexGetConeSection(dmParallel, &newConeSection));
11149566063dSJacob Faibussowitsch   PetscCall(PetscSFDistributeSection(migrationSF, originalConeSection, &remoteOffsets, newConeSection));
11159566063dSJacob Faibussowitsch   PetscCall(DMSetUp(dmParallel));
1116cc71bff1SMichael Lange   /* Communicate and renumber cones */
11179566063dSJacob Faibussowitsch   PetscCall(PetscSFCreateSectionSF(migrationSF, originalConeSection, remoteOffsets, newConeSection, &coneSF));
11189566063dSJacob Faibussowitsch   PetscCall(PetscFree(remoteOffsets));
11199566063dSJacob Faibussowitsch   PetscCall(DMPlexGetCones(dm, &cones));
1120ac04eaf7SToby Isaac   if (original) {
1121ac04eaf7SToby Isaac     PetscInt numCones;
1122ac04eaf7SToby Isaac 
11239566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetStorageSize(originalConeSection, &numCones));
11249566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(numCones, &globCones));
11259566063dSJacob Faibussowitsch     PetscCall(ISLocalToGlobalMappingApplyBlock(original, numCones, cones, globCones));
1126367003a6SStefano Zampini   } else {
1127ac04eaf7SToby Isaac     globCones = cones;
1128ac04eaf7SToby Isaac   }
11299566063dSJacob Faibussowitsch   PetscCall(DMPlexGetCones(dmParallel, &newCones));
11309566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastBegin(coneSF, MPIU_INT, globCones, newCones, MPI_REPLACE));
11319566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastEnd(coneSF, MPIU_INT, globCones, newCones, MPI_REPLACE));
11321baa6e33SBarry Smith   if (original) PetscCall(PetscFree(globCones));
11339566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetStorageSize(newConeSection, &newConesSize));
11349566063dSJacob Faibussowitsch   PetscCall(ISGlobalToLocalMappingApplyBlock(renumbering, IS_GTOLM_MASK, newConesSize, newCones, NULL, newCones));
113576bd3646SJed Brown   if (PetscDefined(USE_DEBUG)) {
11363533c52bSMatthew G. Knepley     PetscInt  p;
11373533c52bSMatthew G. Knepley     PetscBool valid = PETSC_TRUE;
11383533c52bSMatthew G. Knepley     for (p = 0; p < newConesSize; ++p) {
11399371c9d4SSatish Balay       if (newCones[p] < 0) {
11409371c9d4SSatish Balay         valid = PETSC_FALSE;
11419371c9d4SSatish Balay         PetscCall(PetscPrintf(PETSC_COMM_SELF, "[%d] Point %" PetscInt_FMT " not in overlap SF\n", PetscGlobalRank, p));
11429371c9d4SSatish Balay       }
11433533c52bSMatthew G. Knepley     }
114428b400f6SJacob Faibussowitsch     PetscCheck(valid, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Invalid global to local map");
11453533c52bSMatthew G. Knepley   }
11469566063dSJacob Faibussowitsch   PetscCall(PetscOptionsHasName(((PetscObject)dm)->options, ((PetscObject)dm)->prefix, "-cones_view", &flg));
1147cc71bff1SMichael Lange   if (flg) {
11489566063dSJacob Faibussowitsch     PetscCall(PetscPrintf(comm, "Serial Cone Section:\n"));
11499566063dSJacob Faibussowitsch     PetscCall(PetscSectionView(originalConeSection, PETSC_VIEWER_STDOUT_(comm)));
11509566063dSJacob Faibussowitsch     PetscCall(PetscPrintf(comm, "Parallel Cone Section:\n"));
11519566063dSJacob Faibussowitsch     PetscCall(PetscSectionView(newConeSection, PETSC_VIEWER_STDOUT_(comm)));
11529566063dSJacob Faibussowitsch     PetscCall(PetscSFView(coneSF, NULL));
1153cc71bff1SMichael Lange   }
11549566063dSJacob Faibussowitsch   PetscCall(DMPlexGetConeOrientations(dm, &cones));
11559566063dSJacob Faibussowitsch   PetscCall(DMPlexGetConeOrientations(dmParallel, &newCones));
11569566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastBegin(coneSF, MPIU_INT, cones, newCones, MPI_REPLACE));
11579566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastEnd(coneSF, MPIU_INT, cones, newCones, MPI_REPLACE));
11589566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&coneSF));
11599566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(DMPLEX_DistributeCones, dm, 0, 0, 0));
1160eaf898f9SPatrick Sanan   /* Create supports and stratify DMPlex */
1161cc71bff1SMichael Lange   {
1162cc71bff1SMichael Lange     PetscInt pStart, pEnd;
1163cc71bff1SMichael Lange 
11649566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetChart(pmesh->coneSection, &pStart, &pEnd));
11659566063dSJacob Faibussowitsch     PetscCall(PetscSectionSetChart(pmesh->supportSection, pStart, pEnd));
1166cc71bff1SMichael Lange   }
11679566063dSJacob Faibussowitsch   PetscCall(DMPlexSymmetrize(dmParallel));
11689566063dSJacob Faibussowitsch   PetscCall(DMPlexStratify(dmParallel));
11691cf84007SMatthew G. Knepley   {
11701cf84007SMatthew G. Knepley     PetscBool useCone, useClosure, useAnchors;
11711cf84007SMatthew G. Knepley 
11729566063dSJacob Faibussowitsch     PetscCall(DMGetBasicAdjacency(dm, &useCone, &useClosure));
11739566063dSJacob Faibussowitsch     PetscCall(DMSetBasicAdjacency(dmParallel, useCone, useClosure));
11749566063dSJacob Faibussowitsch     PetscCall(DMPlexGetAdjacencyUseAnchors(dm, &useAnchors));
11759566063dSJacob Faibussowitsch     PetscCall(DMPlexSetAdjacencyUseAnchors(dmParallel, useAnchors));
11761cf84007SMatthew G. Knepley   }
1177cc71bff1SMichael Lange   PetscFunctionReturn(0);
1178cc71bff1SMichael Lange }
1179cc71bff1SMichael Lange 
11809371c9d4SSatish Balay static PetscErrorCode DMPlexDistributeCoordinates(DM dm, PetscSF migrationSF, DM dmParallel) {
11810df0e737SMichael Lange   MPI_Comm         comm;
11829318fe57SMatthew G. Knepley   DM               cdm, cdmParallel;
11830df0e737SMichael Lange   PetscSection     originalCoordSection, newCoordSection;
11840df0e737SMichael Lange   Vec              originalCoordinates, newCoordinates;
11850df0e737SMichael Lange   PetscInt         bs;
11860df0e737SMichael Lange   const char      *name;
11874fb89dddSMatthew G. Knepley   const PetscReal *maxCell, *Lstart, *L;
11880df0e737SMichael Lange 
11890df0e737SMichael Lange   PetscFunctionBegin;
11900df0e737SMichael Lange   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
11910c86c063SLisandro Dalcin   PetscValidHeaderSpecific(dmParallel, DM_CLASSID, 3);
11920df0e737SMichael Lange 
11939566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)dm, &comm));
11946858538eSMatthew G. Knepley   PetscCall(DMGetCoordinateDM(dm, &cdm));
11956858538eSMatthew G. Knepley   PetscCall(DMGetCoordinateDM(dmParallel, &cdmParallel));
11966858538eSMatthew G. Knepley   PetscCall(DMCopyDisc(cdm, cdmParallel));
11979566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateSection(dm, &originalCoordSection));
11989566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateSection(dmParallel, &newCoordSection));
11999566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinatesLocal(dm, &originalCoordinates));
12000df0e737SMichael Lange   if (originalCoordinates) {
12019566063dSJacob Faibussowitsch     PetscCall(VecCreate(PETSC_COMM_SELF, &newCoordinates));
12029566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetName((PetscObject)originalCoordinates, &name));
12039566063dSJacob Faibussowitsch     PetscCall(PetscObjectSetName((PetscObject)newCoordinates, name));
12040df0e737SMichael Lange 
12059566063dSJacob Faibussowitsch     PetscCall(DMPlexDistributeField(dm, migrationSF, originalCoordSection, originalCoordinates, newCoordSection, newCoordinates));
12069566063dSJacob Faibussowitsch     PetscCall(DMSetCoordinatesLocal(dmParallel, newCoordinates));
12079566063dSJacob Faibussowitsch     PetscCall(VecGetBlockSize(originalCoordinates, &bs));
12089566063dSJacob Faibussowitsch     PetscCall(VecSetBlockSize(newCoordinates, bs));
12099566063dSJacob Faibussowitsch     PetscCall(VecDestroy(&newCoordinates));
12100df0e737SMichael Lange   }
12116858538eSMatthew G. Knepley 
12126858538eSMatthew G. Knepley   PetscCall(PetscObjectGetComm((PetscObject)dm, &comm));
12134fb89dddSMatthew G. Knepley   PetscCall(DMGetPeriodicity(dm, &maxCell, &Lstart, &L));
12144fb89dddSMatthew G. Knepley   PetscCall(DMSetPeriodicity(dmParallel, maxCell, Lstart, L));
12156858538eSMatthew G. Knepley   PetscCall(DMGetCellCoordinateDM(dm, &cdm));
12166858538eSMatthew G. Knepley   if (cdm) {
12176858538eSMatthew G. Knepley     PetscCall(DMClone(dmParallel, &cdmParallel));
12186858538eSMatthew G. Knepley     PetscCall(DMSetCellCoordinateDM(dmParallel, cdmParallel));
12199566063dSJacob Faibussowitsch     PetscCall(DMCopyDisc(cdm, cdmParallel));
12206858538eSMatthew G. Knepley     PetscCall(DMDestroy(&cdmParallel));
12216858538eSMatthew G. Knepley     PetscCall(DMGetCellCoordinateSection(dm, &originalCoordSection));
12226858538eSMatthew G. Knepley     PetscCall(DMGetCellCoordinatesLocal(dm, &originalCoordinates));
12236858538eSMatthew G. Knepley     PetscCall(PetscSectionCreate(comm, &newCoordSection));
12246858538eSMatthew G. Knepley     if (originalCoordinates) {
12256858538eSMatthew G. Knepley       PetscCall(VecCreate(PETSC_COMM_SELF, &newCoordinates));
12266858538eSMatthew G. Knepley       PetscCall(PetscObjectGetName((PetscObject)originalCoordinates, &name));
12276858538eSMatthew G. Knepley       PetscCall(PetscObjectSetName((PetscObject)newCoordinates, name));
12286858538eSMatthew G. Knepley 
12296858538eSMatthew G. Knepley       PetscCall(DMPlexDistributeField(dm, migrationSF, originalCoordSection, originalCoordinates, newCoordSection, newCoordinates));
12306858538eSMatthew G. Knepley       PetscCall(VecGetBlockSize(originalCoordinates, &bs));
12316858538eSMatthew G. Knepley       PetscCall(VecSetBlockSize(newCoordinates, bs));
12326858538eSMatthew G. Knepley       PetscCall(DMSetCellCoordinateSection(dmParallel, bs, newCoordSection));
12336858538eSMatthew G. Knepley       PetscCall(DMSetCellCoordinatesLocal(dmParallel, newCoordinates));
12346858538eSMatthew G. Knepley       PetscCall(VecDestroy(&newCoordinates));
12356858538eSMatthew G. Knepley     }
12366858538eSMatthew G. Knepley     PetscCall(PetscSectionDestroy(&newCoordSection));
12376858538eSMatthew G. Knepley   }
12380df0e737SMichael Lange   PetscFunctionReturn(0);
12390df0e737SMichael Lange }
12400df0e737SMichael Lange 
12419371c9d4SSatish Balay static PetscErrorCode DMPlexDistributeLabels(DM dm, PetscSF migrationSF, DM dmParallel) {
1242df0420ecSMatthew G. Knepley   DM_Plex         *mesh = (DM_Plex *)dm->data;
12430df0e737SMichael Lange   MPI_Comm         comm;
12447980c9d4SMatthew G. Knepley   DMLabel          depthLabel;
12450df0e737SMichael Lange   PetscMPIInt      rank;
12467980c9d4SMatthew G. Knepley   PetscInt         depth, d, numLabels, numLocalLabels, l;
1247df0420ecSMatthew G. Knepley   PetscBool        hasLabels  = PETSC_FALSE, lsendDepth, sendDepth;
1248df0420ecSMatthew G. Knepley   PetscObjectState depthState = -1;
12490df0e737SMichael Lange 
12500df0e737SMichael Lange   PetscFunctionBegin;
12510df0e737SMichael Lange   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
12520c86c063SLisandro Dalcin   PetscValidHeaderSpecific(dmParallel, DM_CLASSID, 3);
12530c86c063SLisandro Dalcin 
12549566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(DMPLEX_DistributeLabels, dm, 0, 0, 0));
12559566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)dm, &comm));
12569566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(comm, &rank));
12570df0e737SMichael Lange 
1258df0420ecSMatthew G. Knepley   /* If the user has changed the depth label, communicate it instead */
12599566063dSJacob Faibussowitsch   PetscCall(DMPlexGetDepth(dm, &depth));
12609566063dSJacob Faibussowitsch   PetscCall(DMPlexGetDepthLabel(dm, &depthLabel));
12619566063dSJacob Faibussowitsch   if (depthLabel) PetscCall(PetscObjectStateGet((PetscObject)depthLabel, &depthState));
1262df0420ecSMatthew G. Knepley   lsendDepth = mesh->depthState != depthState ? PETSC_TRUE : PETSC_FALSE;
12631c2dc1cbSBarry Smith   PetscCall(MPIU_Allreduce(&lsendDepth, &sendDepth, 1, MPIU_BOOL, MPI_LOR, comm));
1264df0420ecSMatthew G. Knepley   if (sendDepth) {
12659566063dSJacob Faibussowitsch     PetscCall(DMPlexGetDepthLabel(dmParallel, &dmParallel->depthLabel));
12669566063dSJacob Faibussowitsch     PetscCall(DMRemoveLabelBySelf(dmParallel, &dmParallel->depthLabel, PETSC_FALSE));
1267df0420ecSMatthew G. Knepley   }
1268d995df53SMatthew G. Knepley   /* Everyone must have either the same number of labels, or none */
12699566063dSJacob Faibussowitsch   PetscCall(DMGetNumLabels(dm, &numLocalLabels));
1270d995df53SMatthew G. Knepley   numLabels = numLocalLabels;
12719566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Bcast(&numLabels, 1, MPIU_INT, 0, comm));
1272627847f0SMatthew G. Knepley   if (numLabels == numLocalLabels) hasLabels = PETSC_TRUE;
12735d80c0bfSVaclav Hapla   for (l = 0; l < numLabels; ++l) {
1274bdd2d751SMichael Lange     DMLabel     label = NULL, labelNew = NULL;
127583e10cb3SLisandro Dalcin     PetscBool   isDepth, lisOutput     = PETSC_TRUE, isOutput;
1276d67d17b1SMatthew G. Knepley     const char *name = NULL;
12770df0e737SMichael Lange 
1278d67d17b1SMatthew G. Knepley     if (hasLabels) {
12799566063dSJacob Faibussowitsch       PetscCall(DMGetLabelByNum(dm, l, &label));
12800df0e737SMichael Lange       /* Skip "depth" because it is recreated */
12819566063dSJacob Faibussowitsch       PetscCall(PetscObjectGetName((PetscObject)label, &name));
12829566063dSJacob Faibussowitsch       PetscCall(PetscStrcmp(name, "depth", &isDepth));
1283d67d17b1SMatthew G. Knepley     }
12849566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Bcast(&isDepth, 1, MPIU_BOOL, 0, comm));
128583e10cb3SLisandro Dalcin     if (isDepth && !sendDepth) continue;
12869566063dSJacob Faibussowitsch     PetscCall(DMLabelDistribute(label, migrationSF, &labelNew));
128783e10cb3SLisandro Dalcin     if (isDepth) {
12887980c9d4SMatthew G. Knepley       /* Put in any missing strata which can occur if users are managing the depth label themselves */
12897980c9d4SMatthew G. Knepley       PetscInt gdepth;
12907980c9d4SMatthew G. Knepley 
12911c2dc1cbSBarry Smith       PetscCall(MPIU_Allreduce(&depth, &gdepth, 1, MPIU_INT, MPI_MAX, comm));
129263a3b9bcSJacob Faibussowitsch       PetscCheck(!(depth >= 0) || !(gdepth != depth), PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Inconsistent Plex depth %" PetscInt_FMT " != %" PetscInt_FMT, depth, gdepth);
12937980c9d4SMatthew G. Knepley       for (d = 0; d <= gdepth; ++d) {
12947980c9d4SMatthew G. Knepley         PetscBool has;
12957980c9d4SMatthew G. Knepley 
12969566063dSJacob Faibussowitsch         PetscCall(DMLabelHasStratum(labelNew, d, &has));
12979566063dSJacob Faibussowitsch         if (!has) PetscCall(DMLabelAddStratum(labelNew, d));
12987980c9d4SMatthew G. Knepley       }
12997980c9d4SMatthew G. Knepley     }
13009566063dSJacob Faibussowitsch     PetscCall(DMAddLabel(dmParallel, labelNew));
130183e10cb3SLisandro Dalcin     /* Put the output flag in the new label */
13029566063dSJacob Faibussowitsch     if (hasLabels) PetscCall(DMGetLabelOutput(dm, name, &lisOutput));
13031c2dc1cbSBarry Smith     PetscCall(MPIU_Allreduce(&lisOutput, &isOutput, 1, MPIU_BOOL, MPI_LAND, comm));
13049566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetName((PetscObject)labelNew, &name));
13059566063dSJacob Faibussowitsch     PetscCall(DMSetLabelOutput(dmParallel, name, isOutput));
13069566063dSJacob Faibussowitsch     PetscCall(DMLabelDestroy(&labelNew));
13070df0e737SMichael Lange   }
1308695799ffSMatthew G. Knepley   {
1309695799ffSMatthew G. Knepley     DMLabel ctLabel;
1310695799ffSMatthew G. Knepley 
1311695799ffSMatthew G. Knepley     // Reset label for fast lookup
1312695799ffSMatthew G. Knepley     PetscCall(DMPlexGetCellTypeLabel(dmParallel, &ctLabel));
1313695799ffSMatthew G. Knepley     PetscCall(DMLabelMakeAllInvalid_Internal(ctLabel));
1314695799ffSMatthew G. Knepley   }
13159566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(DMPLEX_DistributeLabels, dm, 0, 0, 0));
13160df0e737SMichael Lange   PetscFunctionReturn(0);
13170df0e737SMichael Lange }
13180df0e737SMichael Lange 
13199371c9d4SSatish Balay static PetscErrorCode DMPlexDistributeSetupTree(DM dm, PetscSF migrationSF, ISLocalToGlobalMapping original, ISLocalToGlobalMapping renumbering, DM dmParallel) {
132015078cd4SMichael Lange   DM_Plex     *mesh  = (DM_Plex *)dm->data;
132115078cd4SMichael Lange   DM_Plex     *pmesh = (DM_Plex *)(dmParallel)->data;
1322a6f36705SMichael Lange   MPI_Comm     comm;
1323a6f36705SMichael Lange   DM           refTree;
1324a6f36705SMichael Lange   PetscSection origParentSection, newParentSection;
1325a6f36705SMichael Lange   PetscInt    *origParents, *origChildIDs;
1326a6f36705SMichael Lange   PetscBool    flg;
1327a6f36705SMichael Lange 
1328a6f36705SMichael Lange   PetscFunctionBegin;
1329a6f36705SMichael Lange   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
13300c86c063SLisandro Dalcin   PetscValidHeaderSpecific(dmParallel, DM_CLASSID, 5);
13319566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)dm, &comm));
1332a6f36705SMichael Lange 
1333a6f36705SMichael Lange   /* Set up tree */
13349566063dSJacob Faibussowitsch   PetscCall(DMPlexGetReferenceTree(dm, &refTree));
13359566063dSJacob Faibussowitsch   PetscCall(DMPlexSetReferenceTree(dmParallel, refTree));
13369566063dSJacob Faibussowitsch   PetscCall(DMPlexGetTree(dm, &origParentSection, &origParents, &origChildIDs, NULL, NULL));
1337a6f36705SMichael Lange   if (origParentSection) {
1338a6f36705SMichael Lange     PetscInt  pStart, pEnd;
133908633170SToby Isaac     PetscInt *newParents, *newChildIDs, *globParents;
1340a6f36705SMichael Lange     PetscInt *remoteOffsetsParents, newParentSize;
1341a6f36705SMichael Lange     PetscSF   parentSF;
1342a6f36705SMichael Lange 
13439566063dSJacob Faibussowitsch     PetscCall(DMPlexGetChart(dmParallel, &pStart, &pEnd));
13449566063dSJacob Faibussowitsch     PetscCall(PetscSectionCreate(PetscObjectComm((PetscObject)dmParallel), &newParentSection));
13459566063dSJacob Faibussowitsch     PetscCall(PetscSectionSetChart(newParentSection, pStart, pEnd));
13469566063dSJacob Faibussowitsch     PetscCall(PetscSFDistributeSection(migrationSF, origParentSection, &remoteOffsetsParents, newParentSection));
13479566063dSJacob Faibussowitsch     PetscCall(PetscSFCreateSectionSF(migrationSF, origParentSection, remoteOffsetsParents, newParentSection, &parentSF));
13489566063dSJacob Faibussowitsch     PetscCall(PetscFree(remoteOffsetsParents));
13499566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetStorageSize(newParentSection, &newParentSize));
13509566063dSJacob Faibussowitsch     PetscCall(PetscMalloc2(newParentSize, &newParents, newParentSize, &newChildIDs));
135108633170SToby Isaac     if (original) {
135208633170SToby Isaac       PetscInt numParents;
135308633170SToby Isaac 
13549566063dSJacob Faibussowitsch       PetscCall(PetscSectionGetStorageSize(origParentSection, &numParents));
13559566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(numParents, &globParents));
13569566063dSJacob Faibussowitsch       PetscCall(ISLocalToGlobalMappingApplyBlock(original, numParents, origParents, globParents));
13579371c9d4SSatish Balay     } else {
135808633170SToby Isaac       globParents = origParents;
135908633170SToby Isaac     }
13609566063dSJacob Faibussowitsch     PetscCall(PetscSFBcastBegin(parentSF, MPIU_INT, globParents, newParents, MPI_REPLACE));
13619566063dSJacob Faibussowitsch     PetscCall(PetscSFBcastEnd(parentSF, MPIU_INT, globParents, newParents, MPI_REPLACE));
13621baa6e33SBarry Smith     if (original) PetscCall(PetscFree(globParents));
13639566063dSJacob Faibussowitsch     PetscCall(PetscSFBcastBegin(parentSF, MPIU_INT, origChildIDs, newChildIDs, MPI_REPLACE));
13649566063dSJacob Faibussowitsch     PetscCall(PetscSFBcastEnd(parentSF, MPIU_INT, origChildIDs, newChildIDs, MPI_REPLACE));
13659566063dSJacob Faibussowitsch     PetscCall(ISGlobalToLocalMappingApplyBlock(renumbering, IS_GTOLM_MASK, newParentSize, newParents, NULL, newParents));
136676bd3646SJed Brown     if (PetscDefined(USE_DEBUG)) {
13674a54e071SToby Isaac       PetscInt  p;
13684a54e071SToby Isaac       PetscBool valid = PETSC_TRUE;
13694a54e071SToby Isaac       for (p = 0; p < newParentSize; ++p) {
13709371c9d4SSatish Balay         if (newParents[p] < 0) {
13719371c9d4SSatish Balay           valid = PETSC_FALSE;
13729371c9d4SSatish Balay           PetscCall(PetscPrintf(PETSC_COMM_SELF, "Point %" PetscInt_FMT " not in overlap SF\n", p));
13739371c9d4SSatish Balay         }
13744a54e071SToby Isaac       }
137528b400f6SJacob Faibussowitsch       PetscCheck(valid, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Invalid global to local map");
13764a54e071SToby Isaac     }
13779566063dSJacob Faibussowitsch     PetscCall(PetscOptionsHasName(((PetscObject)dm)->options, ((PetscObject)dm)->prefix, "-parents_view", &flg));
1378a6f36705SMichael Lange     if (flg) {
13799566063dSJacob Faibussowitsch       PetscCall(PetscPrintf(comm, "Serial Parent Section: \n"));
13809566063dSJacob Faibussowitsch       PetscCall(PetscSectionView(origParentSection, PETSC_VIEWER_STDOUT_(comm)));
13819566063dSJacob Faibussowitsch       PetscCall(PetscPrintf(comm, "Parallel Parent Section: \n"));
13829566063dSJacob Faibussowitsch       PetscCall(PetscSectionView(newParentSection, PETSC_VIEWER_STDOUT_(comm)));
13839566063dSJacob Faibussowitsch       PetscCall(PetscSFView(parentSF, NULL));
1384a6f36705SMichael Lange     }
13859566063dSJacob Faibussowitsch     PetscCall(DMPlexSetTree(dmParallel, newParentSection, newParents, newChildIDs));
13869566063dSJacob Faibussowitsch     PetscCall(PetscSectionDestroy(&newParentSection));
13879566063dSJacob Faibussowitsch     PetscCall(PetscFree2(newParents, newChildIDs));
13889566063dSJacob Faibussowitsch     PetscCall(PetscSFDestroy(&parentSF));
1389a6f36705SMichael Lange   }
139015078cd4SMichael Lange   pmesh->useAnchors = mesh->useAnchors;
1391a6f36705SMichael Lange   PetscFunctionReturn(0);
1392a6f36705SMichael Lange }
13930df0e737SMichael Lange 
13949371c9d4SSatish Balay PETSC_UNUSED static PetscErrorCode DMPlexDistributeSF(DM dm, PetscSF migrationSF, DM dmParallel) {
13959852e123SBarry Smith   PetscMPIInt rank, size;
13964eca1733SMichael Lange   MPI_Comm    comm;
13974eca1733SMichael Lange 
13984eca1733SMichael Lange   PetscFunctionBegin;
13994eca1733SMichael Lange   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
14000c86c063SLisandro Dalcin   PetscValidHeaderSpecific(dmParallel, DM_CLASSID, 3);
14014eca1733SMichael Lange 
14024eca1733SMichael Lange   /* Create point SF for parallel mesh */
14039566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(DMPLEX_DistributeSF, dm, 0, 0, 0));
14049566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)dm, &comm));
14059566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(comm, &rank));
14069566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
14074eca1733SMichael Lange   {
14084eca1733SMichael Lange     const PetscInt *leaves;
14094eca1733SMichael Lange     PetscSFNode    *remotePoints, *rowners, *lowners;
14104eca1733SMichael Lange     PetscInt        numRoots, numLeaves, numGhostPoints = 0, p, gp, *ghostPoints;
14114eca1733SMichael Lange     PetscInt        pStart, pEnd;
14124eca1733SMichael Lange 
14139566063dSJacob Faibussowitsch     PetscCall(DMPlexGetChart(dmParallel, &pStart, &pEnd));
14149566063dSJacob Faibussowitsch     PetscCall(PetscSFGetGraph(migrationSF, &numRoots, &numLeaves, &leaves, NULL));
14159566063dSJacob Faibussowitsch     PetscCall(PetscMalloc2(numRoots, &rowners, numLeaves, &lowners));
14164eca1733SMichael Lange     for (p = 0; p < numRoots; p++) {
14174eca1733SMichael Lange       rowners[p].rank  = -1;
14184eca1733SMichael Lange       rowners[p].index = -1;
14194eca1733SMichael Lange     }
14209566063dSJacob Faibussowitsch     PetscCall(PetscSFBcastBegin(migrationSF, MPIU_2INT, rowners, lowners, MPI_REPLACE));
14219566063dSJacob Faibussowitsch     PetscCall(PetscSFBcastEnd(migrationSF, MPIU_2INT, rowners, lowners, MPI_REPLACE));
14224eca1733SMichael Lange     for (p = 0; p < numLeaves; ++p) {
14234eca1733SMichael Lange       if (lowners[p].rank < 0 || lowners[p].rank == rank) { /* Either put in a bid or we know we own it */
14244eca1733SMichael Lange         lowners[p].rank  = rank;
14254eca1733SMichael Lange         lowners[p].index = leaves ? leaves[p] : p;
14264eca1733SMichael Lange       } else if (lowners[p].rank >= 0) { /* Point already claimed so flag so that MAXLOC does not listen to us */
14274eca1733SMichael Lange         lowners[p].rank  = -2;
14284eca1733SMichael Lange         lowners[p].index = -2;
14294eca1733SMichael Lange       }
14304eca1733SMichael Lange     }
14314eca1733SMichael Lange     for (p = 0; p < numRoots; p++) { /* Root must not participate in the rediction, flag so that MAXLOC does not use */
14324eca1733SMichael Lange       rowners[p].rank  = -3;
14334eca1733SMichael Lange       rowners[p].index = -3;
14344eca1733SMichael Lange     }
14359566063dSJacob Faibussowitsch     PetscCall(PetscSFReduceBegin(migrationSF, MPIU_2INT, lowners, rowners, MPI_MAXLOC));
14369566063dSJacob Faibussowitsch     PetscCall(PetscSFReduceEnd(migrationSF, MPIU_2INT, lowners, rowners, MPI_MAXLOC));
14379566063dSJacob Faibussowitsch     PetscCall(PetscSFBcastBegin(migrationSF, MPIU_2INT, rowners, lowners, MPI_REPLACE));
14389566063dSJacob Faibussowitsch     PetscCall(PetscSFBcastEnd(migrationSF, MPIU_2INT, rowners, lowners, MPI_REPLACE));
14394eca1733SMichael Lange     for (p = 0; p < numLeaves; ++p) {
14401dca8a05SBarry Smith       PetscCheck(lowners[p].rank >= 0 && lowners[p].index >= 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Cell partition corrupt: point not claimed");
14414eca1733SMichael Lange       if (lowners[p].rank != rank) ++numGhostPoints;
14424eca1733SMichael Lange     }
14439566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(numGhostPoints, &ghostPoints));
14449566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(numGhostPoints, &remotePoints));
14454eca1733SMichael Lange     for (p = 0, gp = 0; p < numLeaves; ++p) {
14464eca1733SMichael Lange       if (lowners[p].rank != rank) {
14474eca1733SMichael Lange         ghostPoints[gp]        = leaves ? leaves[p] : p;
14484eca1733SMichael Lange         remotePoints[gp].rank  = lowners[p].rank;
14494eca1733SMichael Lange         remotePoints[gp].index = lowners[p].index;
14504eca1733SMichael Lange         ++gp;
14514eca1733SMichael Lange       }
14524eca1733SMichael Lange     }
14539566063dSJacob Faibussowitsch     PetscCall(PetscFree2(rowners, lowners));
14549566063dSJacob Faibussowitsch     PetscCall(PetscSFSetGraph((dmParallel)->sf, pEnd - pStart, numGhostPoints, ghostPoints, PETSC_OWN_POINTER, remotePoints, PETSC_OWN_POINTER));
14559566063dSJacob Faibussowitsch     PetscCall(PetscSFSetFromOptions((dmParallel)->sf));
14564eca1733SMichael Lange   }
14571cf84007SMatthew G. Knepley   {
14581cf84007SMatthew G. Knepley     PetscBool useCone, useClosure, useAnchors;
14591cf84007SMatthew G. Knepley 
14609566063dSJacob Faibussowitsch     PetscCall(DMGetBasicAdjacency(dm, &useCone, &useClosure));
14619566063dSJacob Faibussowitsch     PetscCall(DMSetBasicAdjacency(dmParallel, useCone, useClosure));
14629566063dSJacob Faibussowitsch     PetscCall(DMPlexGetAdjacencyUseAnchors(dm, &useAnchors));
14639566063dSJacob Faibussowitsch     PetscCall(DMPlexSetAdjacencyUseAnchors(dmParallel, useAnchors));
14641cf84007SMatthew G. Knepley   }
14659566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(DMPLEX_DistributeSF, dm, 0, 0, 0));
14664eca1733SMichael Lange   PetscFunctionReturn(0);
14674eca1733SMichael Lange }
14684eca1733SMichael Lange 
146998ba2d7fSLawrence Mitchell /*@
147098ba2d7fSLawrence Mitchell   DMPlexSetPartitionBalance - Should distribution of the DM attempt to balance the shared point partition?
147198ba2d7fSLawrence Mitchell 
147298ba2d7fSLawrence Mitchell   Input Parameters:
147398ba2d7fSLawrence Mitchell + dm - The DMPlex object
147498ba2d7fSLawrence Mitchell - flg - Balance the partition?
147598ba2d7fSLawrence Mitchell 
147698ba2d7fSLawrence Mitchell   Level: intermediate
147798ba2d7fSLawrence Mitchell 
1478db781477SPatrick Sanan .seealso: `DMPlexDistribute()`, `DMPlexGetPartitionBalance()`
147998ba2d7fSLawrence Mitchell @*/
14809371c9d4SSatish Balay PetscErrorCode DMPlexSetPartitionBalance(DM dm, PetscBool flg) {
148198ba2d7fSLawrence Mitchell   DM_Plex *mesh = (DM_Plex *)dm->data;
148298ba2d7fSLawrence Mitchell 
148398ba2d7fSLawrence Mitchell   PetscFunctionBegin;
148498ba2d7fSLawrence Mitchell   mesh->partitionBalance = flg;
148598ba2d7fSLawrence Mitchell   PetscFunctionReturn(0);
148698ba2d7fSLawrence Mitchell }
148798ba2d7fSLawrence Mitchell 
148898ba2d7fSLawrence Mitchell /*@
148998ba2d7fSLawrence Mitchell   DMPlexGetPartitionBalance - Does distribution of the DM attempt to balance the shared point partition?
149098ba2d7fSLawrence Mitchell 
149198ba2d7fSLawrence Mitchell   Input Parameter:
1492a2b725a8SWilliam Gropp . dm - The DMPlex object
149398ba2d7fSLawrence Mitchell 
149498ba2d7fSLawrence Mitchell   Output Parameter:
1495a2b725a8SWilliam Gropp . flg - Balance the partition?
149698ba2d7fSLawrence Mitchell 
149798ba2d7fSLawrence Mitchell   Level: intermediate
149898ba2d7fSLawrence Mitchell 
1499db781477SPatrick Sanan .seealso: `DMPlexDistribute()`, `DMPlexSetPartitionBalance()`
150098ba2d7fSLawrence Mitchell @*/
15019371c9d4SSatish Balay PetscErrorCode DMPlexGetPartitionBalance(DM dm, PetscBool *flg) {
150298ba2d7fSLawrence Mitchell   DM_Plex *mesh = (DM_Plex *)dm->data;
150398ba2d7fSLawrence Mitchell 
150498ba2d7fSLawrence Mitchell   PetscFunctionBegin;
150598ba2d7fSLawrence Mitchell   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
1506534a8f05SLisandro Dalcin   PetscValidBoolPointer(flg, 2);
150798ba2d7fSLawrence Mitchell   *flg = mesh->partitionBalance;
150898ba2d7fSLawrence Mitchell   PetscFunctionReturn(0);
150998ba2d7fSLawrence Mitchell }
151098ba2d7fSLawrence Mitchell 
1511fc02256fSLawrence Mitchell typedef struct {
1512fc02256fSLawrence Mitchell   PetscInt vote, rank, index;
1513fc02256fSLawrence Mitchell } Petsc3Int;
1514fc02256fSLawrence Mitchell 
1515fc02256fSLawrence Mitchell /* MaxLoc, but carry a third piece of information around */
15169371c9d4SSatish Balay static void MPIAPI MaxLocCarry(void *in_, void *inout_, PetscMPIInt *len_, MPI_Datatype *dtype) {
1517fc02256fSLawrence Mitchell   Petsc3Int *a = (Petsc3Int *)inout_;
1518fc02256fSLawrence Mitchell   Petsc3Int *b = (Petsc3Int *)in_;
1519fc02256fSLawrence Mitchell   PetscInt   i, len = *len_;
1520fc02256fSLawrence Mitchell   for (i = 0; i < len; i++) {
1521fc02256fSLawrence Mitchell     if (a[i].vote < b[i].vote) {
1522fc02256fSLawrence Mitchell       a[i].vote  = b[i].vote;
1523fc02256fSLawrence Mitchell       a[i].rank  = b[i].rank;
1524fc02256fSLawrence Mitchell       a[i].index = b[i].index;
1525fc02256fSLawrence Mitchell     } else if (a[i].vote <= b[i].vote) {
1526fc02256fSLawrence Mitchell       if (a[i].rank >= b[i].rank) {
1527fc02256fSLawrence Mitchell         a[i].rank  = b[i].rank;
1528fc02256fSLawrence Mitchell         a[i].index = b[i].index;
1529fc02256fSLawrence Mitchell       }
1530fc02256fSLawrence Mitchell     }
1531fc02256fSLawrence Mitchell   }
1532fc02256fSLawrence Mitchell }
1533fc02256fSLawrence Mitchell 
1534f5bf2dbfSMichael Lange /*@C
1535a8c5bd36SStefano Zampini   DMPlexCreatePointSF - Build a point SF from an SF describing a point migration
1536f5bf2dbfSMichael Lange 
1537064ec1f3Sprj-   Input Parameters:
1538f5bf2dbfSMichael Lange + dm          - The source DMPlex object
1539f5bf2dbfSMichael Lange . migrationSF - The star forest that describes the parallel point remapping
1540d8d19677SJose E. Roman - ownership   - Flag causing a vote to determine point ownership
1541f5bf2dbfSMichael Lange 
1542f5bf2dbfSMichael Lange   Output Parameter:
1543d8d19677SJose E. Roman . pointSF     - The star forest describing the point overlap in the remapped DM
1544f5bf2dbfSMichael Lange 
15453618482eSVaclav Hapla   Notes:
15463618482eSVaclav Hapla   Output pointSF is guaranteed to have the array of local indices (leaves) sorted.
15473618482eSVaclav Hapla 
1548f5bf2dbfSMichael Lange   Level: developer
1549f5bf2dbfSMichael Lange 
1550db781477SPatrick Sanan .seealso: `DMPlexDistribute()`, `DMPlexDistributeOverlap()`
1551f5bf2dbfSMichael Lange @*/
15529371c9d4SSatish Balay PetscErrorCode DMPlexCreatePointSF(DM dm, PetscSF migrationSF, PetscBool ownership, PetscSF *pointSF) {
155323193802SMatthew G. Knepley   PetscMPIInt        rank, size;
15541627f6ccSMichael Lange   PetscInt           p, nroots, nleaves, idx, npointLeaves;
1555f5bf2dbfSMichael Lange   PetscInt          *pointLocal;
1556f5bf2dbfSMichael Lange   const PetscInt    *leaves;
1557f5bf2dbfSMichael Lange   const PetscSFNode *roots;
1558f5bf2dbfSMichael Lange   PetscSFNode       *rootNodes, *leafNodes, *pointRemote;
155923193802SMatthew G. Knepley   Vec                shifts;
1560cae3e4f3SLawrence Mitchell   const PetscInt     numShifts  = 13759;
156123193802SMatthew G. Knepley   const PetscScalar *shift      = NULL;
156223193802SMatthew G. Knepley   const PetscBool    shiftDebug = PETSC_FALSE;
156398ba2d7fSLawrence Mitchell   PetscBool          balance;
1564f5bf2dbfSMichael Lange 
1565f5bf2dbfSMichael Lange   PetscFunctionBegin;
1566f5bf2dbfSMichael Lange   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
15679566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)dm), &rank));
15689566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)dm), &size));
15699566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(DMPLEX_CreatePointSF, dm, 0, 0, 0));
1570f5bf2dbfSMichael Lange 
15719566063dSJacob Faibussowitsch   PetscCall(DMPlexGetPartitionBalance(dm, &balance));
15729566063dSJacob Faibussowitsch   PetscCall(PetscSFGetGraph(migrationSF, &nroots, &nleaves, &leaves, &roots));
15739566063dSJacob Faibussowitsch   PetscCall(PetscMalloc2(nroots, &rootNodes, nleaves, &leafNodes));
1574f5bf2dbfSMichael Lange   if (ownership) {
1575fc02256fSLawrence Mitchell     MPI_Op       op;
1576fc02256fSLawrence Mitchell     MPI_Datatype datatype;
1577fc02256fSLawrence Mitchell     Petsc3Int   *rootVote = NULL, *leafVote = NULL;
157823193802SMatthew G. Knepley     /* If balancing, we compute a random cyclic shift of the rank for each remote point. That way, the max will evenly distribute among ranks. */
157998ba2d7fSLawrence Mitchell     if (balance) {
158023193802SMatthew G. Knepley       PetscRandom r;
158123193802SMatthew G. Knepley 
15829566063dSJacob Faibussowitsch       PetscCall(PetscRandomCreate(PETSC_COMM_SELF, &r));
15839566063dSJacob Faibussowitsch       PetscCall(PetscRandomSetInterval(r, 0, 2467 * size));
15849566063dSJacob Faibussowitsch       PetscCall(VecCreate(PETSC_COMM_SELF, &shifts));
15859566063dSJacob Faibussowitsch       PetscCall(VecSetSizes(shifts, numShifts, numShifts));
15869566063dSJacob Faibussowitsch       PetscCall(VecSetType(shifts, VECSTANDARD));
15879566063dSJacob Faibussowitsch       PetscCall(VecSetRandom(shifts, r));
15889566063dSJacob Faibussowitsch       PetscCall(PetscRandomDestroy(&r));
15899566063dSJacob Faibussowitsch       PetscCall(VecGetArrayRead(shifts, &shift));
159023193802SMatthew G. Knepley     }
159123193802SMatthew G. Knepley 
15929566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(nroots, &rootVote));
15939566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(nleaves, &leafVote));
159423193802SMatthew G. Knepley     /* Point ownership vote: Process with highest rank owns shared points */
1595f5bf2dbfSMichael Lange     for (p = 0; p < nleaves; ++p) {
159623193802SMatthew G. Knepley       if (shiftDebug) {
15979371c9d4SSatish Balay         PetscCall(PetscSynchronizedPrintf(PetscObjectComm((PetscObject)dm), "[%d] Point %" PetscInt_FMT " RemotePoint %" PetscInt_FMT " Shift %" PetscInt_FMT " MyRank %" PetscInt_FMT "\n", rank, leaves ? leaves[p] : p, roots[p].index,
15989371c9d4SSatish Balay                                           (PetscInt)PetscRealPart(shift[roots[p].index % numShifts]), (rank + (shift ? (PetscInt)PetscRealPart(shift[roots[p].index % numShifts]) : 0)) % size));
159923193802SMatthew G. Knepley       }
1600f5bf2dbfSMichael Lange       /* Either put in a bid or we know we own it */
1601fc02256fSLawrence Mitchell       leafVote[p].vote  = (rank + (shift ? (PetscInt)PetscRealPart(shift[roots[p].index % numShifts]) : 0)) % size;
1602fc02256fSLawrence Mitchell       leafVote[p].rank  = rank;
1603fc02256fSLawrence Mitchell       leafVote[p].index = p;
1604f5bf2dbfSMichael Lange     }
1605f5bf2dbfSMichael Lange     for (p = 0; p < nroots; p++) {
16061627f6ccSMichael Lange       /* Root must not participate in the reduction, flag so that MAXLOC does not use */
1607fc02256fSLawrence Mitchell       rootVote[p].vote  = -3;
1608fc02256fSLawrence Mitchell       rootVote[p].rank  = -3;
1609fc02256fSLawrence Mitchell       rootVote[p].index = -3;
1610f5bf2dbfSMichael Lange     }
16119566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Type_contiguous(3, MPIU_INT, &datatype));
16129566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Type_commit(&datatype));
16139566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Op_create(&MaxLocCarry, 1, &op));
16149566063dSJacob Faibussowitsch     PetscCall(PetscSFReduceBegin(migrationSF, datatype, leafVote, rootVote, op));
16159566063dSJacob Faibussowitsch     PetscCall(PetscSFReduceEnd(migrationSF, datatype, leafVote, rootVote, op));
16169566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Op_free(&op));
16179566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Type_free(&datatype));
1618c091126eSLawrence Mitchell     for (p = 0; p < nroots; p++) {
1619fc02256fSLawrence Mitchell       rootNodes[p].rank  = rootVote[p].rank;
1620fc02256fSLawrence Mitchell       rootNodes[p].index = rootVote[p].index;
1621c091126eSLawrence Mitchell     }
16229566063dSJacob Faibussowitsch     PetscCall(PetscFree(leafVote));
16239566063dSJacob Faibussowitsch     PetscCall(PetscFree(rootVote));
1624f5bf2dbfSMichael Lange   } else {
1625f5bf2dbfSMichael Lange     for (p = 0; p < nroots; p++) {
1626f5bf2dbfSMichael Lange       rootNodes[p].index = -1;
1627f5bf2dbfSMichael Lange       rootNodes[p].rank  = rank;
1628fc02256fSLawrence Mitchell     }
1629f5bf2dbfSMichael Lange     for (p = 0; p < nleaves; p++) {
1630f5bf2dbfSMichael Lange       /* Write new local id into old location */
16319371c9d4SSatish Balay       if (roots[p].rank == rank) { rootNodes[roots[p].index].index = leaves ? leaves[p] : p; }
1632f5bf2dbfSMichael Lange     }
1633f5bf2dbfSMichael Lange   }
16349566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastBegin(migrationSF, MPIU_2INT, rootNodes, leafNodes, MPI_REPLACE));
16359566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastEnd(migrationSF, MPIU_2INT, rootNodes, leafNodes, MPI_REPLACE));
1636f5bf2dbfSMichael Lange 
163723193802SMatthew G. Knepley   for (npointLeaves = 0, p = 0; p < nleaves; p++) {
1638b0e1264bSMatthew G. Knepley     if (leafNodes[p].rank != rank) npointLeaves++;
163923193802SMatthew G. Knepley   }
16409566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(npointLeaves, &pointLocal));
16419566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(npointLeaves, &pointRemote));
1642f5bf2dbfSMichael Lange   for (idx = 0, p = 0; p < nleaves; p++) {
1643b0e1264bSMatthew G. Knepley     if (leafNodes[p].rank != rank) {
16443618482eSVaclav Hapla       /* Note that pointLocal is automatically sorted as it is sublist of 0, ..., nleaves-1 */
1645f5bf2dbfSMichael Lange       pointLocal[idx]  = p;
1646f5bf2dbfSMichael Lange       pointRemote[idx] = leafNodes[p];
1647f5bf2dbfSMichael Lange       idx++;
1648f5bf2dbfSMichael Lange     }
1649f5bf2dbfSMichael Lange   }
165023193802SMatthew G. Knepley   if (shift) {
16519566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayRead(shifts, &shift));
16529566063dSJacob Faibussowitsch     PetscCall(VecDestroy(&shifts));
165323193802SMatthew G. Knepley   }
16549566063dSJacob Faibussowitsch   if (shiftDebug) PetscCall(PetscSynchronizedFlush(PetscObjectComm((PetscObject)dm), PETSC_STDOUT));
16559566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)dm), pointSF));
16569566063dSJacob Faibussowitsch   PetscCall(PetscSFSetFromOptions(*pointSF));
16579566063dSJacob Faibussowitsch   PetscCall(PetscSFSetGraph(*pointSF, nleaves, npointLeaves, pointLocal, PETSC_OWN_POINTER, pointRemote, PETSC_OWN_POINTER));
16589566063dSJacob Faibussowitsch   PetscCall(PetscFree2(rootNodes, leafNodes));
16599566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(DMPLEX_CreatePointSF, dm, 0, 0, 0));
16606c1ef331SVaclav Hapla   if (PetscDefined(USE_DEBUG)) PetscCall(DMPlexCheckPointSF(dm, *pointSF));
1661f5bf2dbfSMichael Lange   PetscFunctionReturn(0);
1662f5bf2dbfSMichael Lange }
1663f5bf2dbfSMichael Lange 
166415078cd4SMichael Lange /*@C
166515078cd4SMichael Lange   DMPlexMigrate  - Migrates internal DM data over the supplied star forest
166615078cd4SMichael Lange 
1667d083f849SBarry Smith   Collective on dm
166883655b49SVáclav Hapla 
1669064ec1f3Sprj-   Input Parameters:
167015078cd4SMichael Lange + dm       - The source DMPlex object
1671d8d19677SJose E. Roman - sf       - The star forest communication context describing the migration pattern
167215078cd4SMichael Lange 
167315078cd4SMichael Lange   Output Parameter:
1674d8d19677SJose E. Roman . targetDM - The target DMPlex object
167515078cd4SMichael Lange 
1676b9f40539SMichael Lange   Level: intermediate
167715078cd4SMichael Lange 
1678db781477SPatrick Sanan .seealso: `DMPlexDistribute()`, `DMPlexDistributeOverlap()`
167915078cd4SMichael Lange @*/
16809371c9d4SSatish Balay PetscErrorCode DMPlexMigrate(DM dm, PetscSF sf, DM targetDM) {
1681b9f40539SMichael Lange   MPI_Comm               comm;
1682cc1750acSStefano Zampini   PetscInt               dim, cdim, nroots;
1683b9f40539SMichael Lange   PetscSF                sfPoint;
168415078cd4SMichael Lange   ISLocalToGlobalMapping ltogMigration;
1685ac04eaf7SToby Isaac   ISLocalToGlobalMapping ltogOriginal = NULL;
168615078cd4SMichael Lange 
168715078cd4SMichael Lange   PetscFunctionBegin;
168815078cd4SMichael Lange   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
16899566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(DMPLEX_Migrate, dm, 0, 0, 0));
16909566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)dm, &comm));
16919566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dm, &dim));
16929566063dSJacob Faibussowitsch   PetscCall(DMSetDimension(targetDM, dim));
16939566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateDim(dm, &cdim));
16949566063dSJacob Faibussowitsch   PetscCall(DMSetCoordinateDim(targetDM, cdim));
169515078cd4SMichael Lange 
1696bfb0467fSMichael Lange   /* Check for a one-to-all distribution pattern */
16979566063dSJacob Faibussowitsch   PetscCall(DMGetPointSF(dm, &sfPoint));
16989566063dSJacob Faibussowitsch   PetscCall(PetscSFGetGraph(sfPoint, &nroots, NULL, NULL, NULL));
1699bfb0467fSMichael Lange   if (nroots >= 0) {
1700b9f40539SMichael Lange     IS        isOriginal;
1701ac04eaf7SToby Isaac     PetscInt  n, size, nleaves;
1702ac04eaf7SToby Isaac     PetscInt *numbering_orig, *numbering_new;
1703367003a6SStefano Zampini 
1704b9f40539SMichael Lange     /* Get the original point numbering */
17059566063dSJacob Faibussowitsch     PetscCall(DMPlexCreatePointNumbering(dm, &isOriginal));
17069566063dSJacob Faibussowitsch     PetscCall(ISLocalToGlobalMappingCreateIS(isOriginal, &ltogOriginal));
17079566063dSJacob Faibussowitsch     PetscCall(ISLocalToGlobalMappingGetSize(ltogOriginal, &size));
17089566063dSJacob Faibussowitsch     PetscCall(ISLocalToGlobalMappingGetBlockIndices(ltogOriginal, (const PetscInt **)&numbering_orig));
1709b9f40539SMichael Lange     /* Convert to positive global numbers */
17109371c9d4SSatish Balay     for (n = 0; n < size; n++) {
17119371c9d4SSatish Balay       if (numbering_orig[n] < 0) numbering_orig[n] = -(numbering_orig[n] + 1);
17129371c9d4SSatish Balay     }
1713b9f40539SMichael Lange     /* Derive the new local-to-global mapping from the old one */
17149566063dSJacob Faibussowitsch     PetscCall(PetscSFGetGraph(sf, NULL, &nleaves, NULL, NULL));
17159566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(nleaves, &numbering_new));
17169566063dSJacob Faibussowitsch     PetscCall(PetscSFBcastBegin(sf, MPIU_INT, numbering_orig, numbering_new, MPI_REPLACE));
17179566063dSJacob Faibussowitsch     PetscCall(PetscSFBcastEnd(sf, MPIU_INT, numbering_orig, numbering_new, MPI_REPLACE));
17189566063dSJacob Faibussowitsch     PetscCall(ISLocalToGlobalMappingCreate(comm, 1, nleaves, numbering_new, PETSC_OWN_POINTER, &ltogMigration));
17199566063dSJacob Faibussowitsch     PetscCall(ISLocalToGlobalMappingRestoreIndices(ltogOriginal, (const PetscInt **)&numbering_orig));
17209566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&isOriginal));
172115078cd4SMichael Lange   } else {
1722bfb0467fSMichael Lange     /* One-to-all distribution pattern: We can derive LToG from SF */
17239566063dSJacob Faibussowitsch     PetscCall(ISLocalToGlobalMappingCreateSF(sf, 0, &ltogMigration));
172415078cd4SMichael Lange   }
1725a5a902f7SVaclav Hapla   PetscCall(PetscObjectSetName((PetscObject)ltogMigration, "Point renumbering for DM migration"));
1726a5a902f7SVaclav Hapla   PetscCall(ISLocalToGlobalMappingViewFromOptions(ltogMigration, (PetscObject)dm, "-partition_view"));
172715078cd4SMichael Lange   /* Migrate DM data to target DM */
17289566063dSJacob Faibussowitsch   PetscCall(DMPlexDistributeCones(dm, sf, ltogOriginal, ltogMigration, targetDM));
17299566063dSJacob Faibussowitsch   PetscCall(DMPlexDistributeLabels(dm, sf, targetDM));
17309566063dSJacob Faibussowitsch   PetscCall(DMPlexDistributeCoordinates(dm, sf, targetDM));
17319566063dSJacob Faibussowitsch   PetscCall(DMPlexDistributeSetupTree(dm, sf, ltogOriginal, ltogMigration, targetDM));
17329566063dSJacob Faibussowitsch   PetscCall(ISLocalToGlobalMappingDestroy(&ltogOriginal));
17339566063dSJacob Faibussowitsch   PetscCall(ISLocalToGlobalMappingDestroy(&ltogMigration));
17349566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(DMPLEX_Migrate, dm, 0, 0, 0));
173515078cd4SMichael Lange   PetscFunctionReturn(0);
173615078cd4SMichael Lange }
173715078cd4SMichael Lange 
17383b8f15a2SMatthew G. Knepley /*@C
173970034214SMatthew G. Knepley   DMPlexDistribute - Distributes the mesh and any associated sections.
174070034214SMatthew G. Knepley 
1741d083f849SBarry Smith   Collective on dm
174270034214SMatthew G. Knepley 
1743064ec1f3Sprj-   Input Parameters:
174470034214SMatthew G. Knepley + dm  - The original DMPlex object
174570034214SMatthew G. Knepley - overlap - The overlap of partitions, 0 is the default
174670034214SMatthew G. Knepley 
1747064ec1f3Sprj-   Output Parameters:
1748f4ae5380SJed Brown + sf - The PetscSF used for point distribution, or NULL if not needed
1749f4ae5380SJed Brown - dmParallel - The distributed DMPlex object
175070034214SMatthew G. Knepley 
1751f4ae5380SJed Brown   Note: If the mesh was not distributed, the output dmParallel will be NULL.
175270034214SMatthew G. Knepley 
1753b0441da4SMatthew G. Knepley   The user can control the definition of adjacency for the mesh using DMSetAdjacency(). They should choose the combination appropriate for the function
175470034214SMatthew G. Knepley   representation on the mesh.
175570034214SMatthew G. Knepley 
175670034214SMatthew G. Knepley   Level: intermediate
175770034214SMatthew G. Knepley 
1758db781477SPatrick Sanan .seealso: `DMPlexCreate()`, `DMSetAdjacency()`, `DMPlexGetOverlap()`
175970034214SMatthew G. Knepley @*/
17609371c9d4SSatish Balay PetscErrorCode DMPlexDistribute(DM dm, PetscInt overlap, PetscSF *sf, DM *dmParallel) {
176170034214SMatthew G. Knepley   MPI_Comm         comm;
176215078cd4SMichael Lange   PetscPartitioner partitioner;
1763f8987ae8SMichael Lange   IS               cellPart;
1764f8987ae8SMichael Lange   PetscSection     cellPartSection;
1765cf86098cSMatthew G. Knepley   DM               dmCoord;
1766f8987ae8SMichael Lange   DMLabel          lblPartition, lblMigration;
1767874ddda9SLisandro Dalcin   PetscSF          sfMigration, sfStratified, sfPoint;
176898ba2d7fSLawrence Mitchell   PetscBool        flg, balance;
1769874ddda9SLisandro Dalcin   PetscMPIInt      rank, size;
177070034214SMatthew G. Knepley 
177170034214SMatthew G. Knepley   PetscFunctionBegin;
177270034214SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
1773d5c515a1SMatthew G. Knepley   PetscValidLogicalCollectiveInt(dm, overlap, 2);
1774d5c515a1SMatthew G. Knepley   if (sf) PetscValidPointer(sf, 3);
1775d5c515a1SMatthew G. Knepley   PetscValidPointer(dmParallel, 4);
177670034214SMatthew G. Knepley 
17770c86c063SLisandro Dalcin   if (sf) *sf = NULL;
17780c86c063SLisandro Dalcin   *dmParallel = NULL;
17799566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)dm, &comm));
17809566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(comm, &rank));
17819566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
17820c86c063SLisandro Dalcin   if (size == 1) PetscFunctionReturn(0);
178370034214SMatthew G. Knepley 
17849566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(DMPLEX_Distribute, dm, 0, 0, 0));
178515078cd4SMichael Lange   /* Create cell partition */
17869566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(DMPLEX_Partition, dm, 0, 0, 0));
17879566063dSJacob Faibussowitsch   PetscCall(PetscSectionCreate(comm, &cellPartSection));
17889566063dSJacob Faibussowitsch   PetscCall(DMPlexGetPartitioner(dm, &partitioner));
17899566063dSJacob Faibussowitsch   PetscCall(PetscPartitionerDMPlexPartition(partitioner, dm, NULL, cellPartSection, &cellPart));
17909566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(DMPLEX_PartSelf, dm, 0, 0, 0));
1791f8987ae8SMichael Lange   {
1792f8987ae8SMichael Lange     /* Convert partition to DMLabel */
1793825f8a23SLisandro Dalcin     IS              is;
1794825f8a23SLisandro Dalcin     PetscHSetI      ht;
1795f8987ae8SMichael Lange     const PetscInt *points;
17968e330a33SStefano Zampini     PetscInt       *iranks;
17978e330a33SStefano Zampini     PetscInt        pStart, pEnd, proc, npoints, poff = 0, nranks;
1798825f8a23SLisandro Dalcin 
17999566063dSJacob Faibussowitsch     PetscCall(DMLabelCreate(PETSC_COMM_SELF, "Point Partition", &lblPartition));
1800825f8a23SLisandro Dalcin     /* Preallocate strata */
18019566063dSJacob Faibussowitsch     PetscCall(PetscHSetICreate(&ht));
18029566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetChart(cellPartSection, &pStart, &pEnd));
1803825f8a23SLisandro Dalcin     for (proc = pStart; proc < pEnd; proc++) {
18049566063dSJacob Faibussowitsch       PetscCall(PetscSectionGetDof(cellPartSection, proc, &npoints));
18059566063dSJacob Faibussowitsch       if (npoints) PetscCall(PetscHSetIAdd(ht, proc));
1806825f8a23SLisandro Dalcin     }
18079566063dSJacob Faibussowitsch     PetscCall(PetscHSetIGetSize(ht, &nranks));
18089566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(nranks, &iranks));
18099566063dSJacob Faibussowitsch     PetscCall(PetscHSetIGetElems(ht, &poff, iranks));
18109566063dSJacob Faibussowitsch     PetscCall(PetscHSetIDestroy(&ht));
18119566063dSJacob Faibussowitsch     PetscCall(DMLabelAddStrata(lblPartition, nranks, iranks));
18129566063dSJacob Faibussowitsch     PetscCall(PetscFree(iranks));
1813825f8a23SLisandro Dalcin     /* Inline DMPlexPartitionLabelClosure() */
18149566063dSJacob Faibussowitsch     PetscCall(ISGetIndices(cellPart, &points));
18159566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetChart(cellPartSection, &pStart, &pEnd));
1816f8987ae8SMichael Lange     for (proc = pStart; proc < pEnd; proc++) {
18179566063dSJacob Faibussowitsch       PetscCall(PetscSectionGetDof(cellPartSection, proc, &npoints));
1818825f8a23SLisandro Dalcin       if (!npoints) continue;
18199566063dSJacob Faibussowitsch       PetscCall(PetscSectionGetOffset(cellPartSection, proc, &poff));
18209566063dSJacob Faibussowitsch       PetscCall(DMPlexClosurePoints_Private(dm, npoints, points + poff, &is));
18219566063dSJacob Faibussowitsch       PetscCall(DMLabelSetStratumIS(lblPartition, proc, is));
18229566063dSJacob Faibussowitsch       PetscCall(ISDestroy(&is));
1823f8987ae8SMichael Lange     }
18249566063dSJacob Faibussowitsch     PetscCall(ISRestoreIndices(cellPart, &points));
1825f8987ae8SMichael Lange   }
18269566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(DMPLEX_PartSelf, dm, 0, 0, 0));
18276e203dd9SStefano Zampini 
18289566063dSJacob Faibussowitsch   PetscCall(DMLabelCreate(PETSC_COMM_SELF, "Point migration", &lblMigration));
18299566063dSJacob Faibussowitsch   PetscCall(DMPlexPartitionLabelInvert(dm, lblPartition, NULL, lblMigration));
18309566063dSJacob Faibussowitsch   PetscCall(DMPlexPartitionLabelCreateSF(dm, lblMigration, &sfMigration));
18319566063dSJacob Faibussowitsch   PetscCall(DMPlexStratifyMigrationSF(dm, sfMigration, &sfStratified));
18329566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&sfMigration));
183343f7d02bSMichael Lange   sfMigration = sfStratified;
18349566063dSJacob Faibussowitsch   PetscCall(PetscSFSetUp(sfMigration));
18359566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(DMPLEX_Partition, dm, 0, 0, 0));
18369566063dSJacob Faibussowitsch   PetscCall(PetscOptionsHasName(((PetscObject)dm)->options, ((PetscObject)dm)->prefix, "-partition_view", &flg));
183770034214SMatthew G. Knepley   if (flg) {
18389566063dSJacob Faibussowitsch     PetscCall(DMLabelView(lblPartition, PETSC_VIEWER_STDOUT_(comm)));
18399566063dSJacob Faibussowitsch     PetscCall(PetscSFView(sfMigration, PETSC_VIEWER_STDOUT_(comm)));
184070034214SMatthew G. Knepley   }
1841f8987ae8SMichael Lange 
184215078cd4SMichael Lange   /* Create non-overlapping parallel DM and migrate internal data */
18439566063dSJacob Faibussowitsch   PetscCall(DMPlexCreate(comm, dmParallel));
18449566063dSJacob Faibussowitsch   PetscCall(PetscObjectSetName((PetscObject)*dmParallel, "Parallel Mesh"));
18459566063dSJacob Faibussowitsch   PetscCall(DMPlexMigrate(dm, sfMigration, *dmParallel));
184670034214SMatthew G. Knepley 
1847a157612eSMichael Lange   /* Build the point SF without overlap */
18489566063dSJacob Faibussowitsch   PetscCall(DMPlexGetPartitionBalance(dm, &balance));
18499566063dSJacob Faibussowitsch   PetscCall(DMPlexSetPartitionBalance(*dmParallel, balance));
18509566063dSJacob Faibussowitsch   PetscCall(DMPlexCreatePointSF(*dmParallel, sfMigration, PETSC_TRUE, &sfPoint));
18519566063dSJacob Faibussowitsch   PetscCall(DMSetPointSF(*dmParallel, sfPoint));
18529566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateDM(*dmParallel, &dmCoord));
18539566063dSJacob Faibussowitsch   if (dmCoord) PetscCall(DMSetPointSF(dmCoord, sfPoint));
18549566063dSJacob Faibussowitsch   if (flg) PetscCall(PetscSFView(sfPoint, NULL));
185570034214SMatthew G. Knepley 
1856a157612eSMichael Lange   if (overlap > 0) {
185715078cd4SMichael Lange     DM                 dmOverlap;
185857f290daSMatthew G. Knepley     PetscInt           nroots, nleaves, noldleaves, l;
185957f290daSMatthew G. Knepley     const PetscInt    *oldLeaves;
186057f290daSMatthew G. Knepley     PetscSFNode       *newRemote, *permRemote;
186115078cd4SMichael Lange     const PetscSFNode *oldRemote;
186215078cd4SMichael Lange     PetscSF            sfOverlap, sfOverlapPoint;
1863524e35f8SStefano Zampini 
1864a157612eSMichael Lange     /* Add the partition overlap to the distributed DM */
18659566063dSJacob Faibussowitsch     PetscCall(DMPlexDistributeOverlap(*dmParallel, overlap, &sfOverlap, &dmOverlap));
18669566063dSJacob Faibussowitsch     PetscCall(DMDestroy(dmParallel));
1867a157612eSMichael Lange     *dmParallel = dmOverlap;
1868c389ea9fSToby Isaac     if (flg) {
18699566063dSJacob Faibussowitsch       PetscCall(PetscPrintf(comm, "Overlap Migration SF:\n"));
18709566063dSJacob Faibussowitsch       PetscCall(PetscSFView(sfOverlap, NULL));
1871c389ea9fSToby Isaac     }
187243331d4aSMichael Lange 
1873f8987ae8SMichael Lange     /* Re-map the migration SF to establish the full migration pattern */
18749566063dSJacob Faibussowitsch     PetscCall(PetscSFGetGraph(sfMigration, &nroots, &noldleaves, &oldLeaves, &oldRemote));
18759566063dSJacob Faibussowitsch     PetscCall(PetscSFGetGraph(sfOverlap, NULL, &nleaves, NULL, NULL));
18769566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(nleaves, &newRemote));
187757f290daSMatthew G. Knepley     /* oldRemote: original root point mapping to original leaf point
187857f290daSMatthew G. Knepley        newRemote: original leaf point mapping to overlapped leaf point */
187957f290daSMatthew G. Knepley     if (oldLeaves) {
188073e69a6aSMatthew G. Knepley       /* After stratification, the migration remotes may not be in root (canonical) order, so we reorder using the leaf numbering */
18819566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(noldleaves, &permRemote));
188257f290daSMatthew G. Knepley       for (l = 0; l < noldleaves; ++l) permRemote[oldLeaves[l]] = oldRemote[l];
188357f290daSMatthew G. Knepley       oldRemote = permRemote;
188457f290daSMatthew G. Knepley     }
18859566063dSJacob Faibussowitsch     PetscCall(PetscSFBcastBegin(sfOverlap, MPIU_2INT, oldRemote, newRemote, MPI_REPLACE));
18869566063dSJacob Faibussowitsch     PetscCall(PetscSFBcastEnd(sfOverlap, MPIU_2INT, oldRemote, newRemote, MPI_REPLACE));
18879566063dSJacob Faibussowitsch     if (oldLeaves) PetscCall(PetscFree(oldRemote));
18889566063dSJacob Faibussowitsch     PetscCall(PetscSFCreate(comm, &sfOverlapPoint));
18899566063dSJacob Faibussowitsch     PetscCall(PetscSFSetGraph(sfOverlapPoint, nroots, nleaves, NULL, PETSC_OWN_POINTER, newRemote, PETSC_OWN_POINTER));
18909566063dSJacob Faibussowitsch     PetscCall(PetscSFDestroy(&sfOverlap));
18919566063dSJacob Faibussowitsch     PetscCall(PetscSFDestroy(&sfMigration));
189215078cd4SMichael Lange     sfMigration = sfOverlapPoint;
1893c389ea9fSToby Isaac   }
1894bf5244c7SMatthew G. Knepley   /* Cleanup Partition */
18959566063dSJacob Faibussowitsch   PetscCall(DMLabelDestroy(&lblPartition));
18969566063dSJacob Faibussowitsch   PetscCall(DMLabelDestroy(&lblMigration));
18979566063dSJacob Faibussowitsch   PetscCall(PetscSectionDestroy(&cellPartSection));
18989566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&cellPart));
189945480ffeSMatthew G. Knepley   /* Copy discretization */
19009566063dSJacob Faibussowitsch   PetscCall(DMCopyDisc(dm, *dmParallel));
190166fe0bfeSMatthew G. Knepley   /* Create sfNatural */
190266fe0bfeSMatthew G. Knepley   if (dm->useNatural) {
190366fe0bfeSMatthew G. Knepley     PetscSection section;
190466fe0bfeSMatthew G. Knepley 
1905*fc6a3818SBlaise Bourdin     PetscCall(DMSetUseNatural(*dmParallel, PETSC_TRUE));
1906*fc6a3818SBlaise Bourdin     PetscCall(DMGetLocalSection(dm, &section));
1907*fc6a3818SBlaise Bourdin 
19088aee0f92SAlexis Marboeuf     /* First DM with useNatural = PETSC_TRUE is considered natural */
19098aee0f92SAlexis Marboeuf     /* sfMigration and sfNatural are respectively the point and dofs SFs mapping to this natural DM */
1910*fc6a3818SBlaise Bourdin     /* Compose with a previous sfNatural if present */
1911*fc6a3818SBlaise Bourdin     if (dm->sfNatural) {
1912*fc6a3818SBlaise Bourdin       PetscSF natSF;
1913*fc6a3818SBlaise Bourdin 
1914*fc6a3818SBlaise Bourdin       PetscCall(DMPlexCreateGlobalToNaturalSF(*dmParallel, section, sfMigration, &natSF));
1915*fc6a3818SBlaise Bourdin       PetscCall(PetscSFCompose(dm->sfNatural, natSF, &(*dmParallel)->sfNatural));
1916*fc6a3818SBlaise Bourdin       PetscCall(PetscSFDestroy(&natSF));
1917*fc6a3818SBlaise Bourdin     } else {
1918*fc6a3818SBlaise Bourdin       PetscCall(DMPlexCreateGlobalToNaturalSF(*dmParallel, section, sfMigration, &(*dmParallel)->sfNatural));
1919*fc6a3818SBlaise Bourdin     }
19208aee0f92SAlexis Marboeuf     /* Compose with a previous sfMigration if present */
19218aee0f92SAlexis Marboeuf     if (dm->sfMigration) {
19228aee0f92SAlexis Marboeuf       PetscSF naturalPointSF;
19238aee0f92SAlexis Marboeuf 
19248aee0f92SAlexis Marboeuf       PetscCall(PetscSFCompose(dm->sfMigration, sfMigration, &naturalPointSF));
19258aee0f92SAlexis Marboeuf       PetscCall(PetscSFDestroy(&sfMigration));
19268aee0f92SAlexis Marboeuf       sfMigration = naturalPointSF;
19278aee0f92SAlexis Marboeuf     }
192866fe0bfeSMatthew G. Knepley   }
19295de52c6dSVaclav Hapla   PetscCall(DMPlexCopy_Internal(dm, PETSC_TRUE, PETSC_FALSE, *dmParallel));
1930721cbd76SMatthew G. Knepley   /* Cleanup */
19319371c9d4SSatish Balay   if (sf) {
19329371c9d4SSatish Balay     *sf = sfMigration;
19339371c9d4SSatish Balay   } else PetscCall(PetscSFDestroy(&sfMigration));
19349566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&sfPoint));
19359566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(DMPLEX_Distribute, dm, 0, 0, 0));
193670034214SMatthew G. Knepley   PetscFunctionReturn(0);
193770034214SMatthew G. Knepley }
1938a157612eSMichael Lange 
1939a157612eSMichael Lange /*@C
194024cc2ca5SMatthew G. Knepley   DMPlexDistributeOverlap - Add partition overlap to a distributed non-overlapping DM.
1941a157612eSMichael Lange 
1942d083f849SBarry Smith   Collective on dm
1943a157612eSMichael Lange 
1944064ec1f3Sprj-   Input Parameters:
1945064ec1f3Sprj- + dm  - The non-overlapping distributed DMPlex object
194657fe9a49SVaclav Hapla - overlap - The overlap of partitions (the same on all ranks)
1947a157612eSMichael Lange 
1948064ec1f3Sprj-   Output Parameters:
1949a157612eSMichael Lange + sf - The PetscSF used for point distribution
1950a157612eSMichael Lange - dmOverlap - The overlapping distributed DMPlex object, or NULL
1951a157612eSMichael Lange 
1952dccdeccaSVaclav Hapla   Notes:
1953dccdeccaSVaclav Hapla   If the mesh was not distributed, the return value is NULL.
1954a157612eSMichael Lange 
1955b0441da4SMatthew G. Knepley   The user can control the definition of adjacency for the mesh using DMSetAdjacency(). They should choose the combination appropriate for the function
1956a157612eSMichael Lange   representation on the mesh.
1957a157612eSMichael Lange 
1958c506a872SMatthew G. Knepley   Options Database Keys:
1959c506a872SMatthew G. Knepley + -dm_plex_overlap_labels <name1,name2,...> - List of overlap label names
1960c506a872SMatthew G. Knepley . -dm_plex_overlap_values <int1,int2,...>   - List of overlap label values
1961c506a872SMatthew G. Knepley . -dm_plex_overlap_exclude_label <name>     - Label used to exclude points from overlap
1962c506a872SMatthew G. Knepley - -dm_plex_overlap_exclude_value <int>      - Label value used to exclude points from overlap
1963c506a872SMatthew G. Knepley 
1964dccdeccaSVaclav Hapla   Level: advanced
1965a157612eSMichael Lange 
1966db781477SPatrick Sanan .seealso: `DMPlexCreate()`, `DMSetAdjacency()`, `DMPlexDistribute()`, `DMPlexCreateOverlapLabel()`, `DMPlexGetOverlap()`
1967a157612eSMichael Lange @*/
19689371c9d4SSatish Balay PetscErrorCode DMPlexDistributeOverlap(DM dm, PetscInt overlap, PetscSF *sf, DM *dmOverlap) {
1969c506a872SMatthew G. Knepley   DM_Plex     *mesh = (DM_Plex *)dm->data;
1970a157612eSMichael Lange   MPI_Comm     comm;
19713567eaeeSMatthew G. Knepley   PetscMPIInt  size, rank;
1972a157612eSMichael Lange   PetscSection rootSection, leafSection;
1973a157612eSMichael Lange   IS           rootrank, leafrank;
1974cf86098cSMatthew G. Knepley   DM           dmCoord;
1975a9f1d5b2SMichael Lange   DMLabel      lblOverlap;
1976f5bf2dbfSMichael Lange   PetscSF      sfOverlap, sfStratified, sfPoint;
1977a157612eSMichael Lange 
1978a157612eSMichael Lange   PetscFunctionBegin;
1979a157612eSMichael Lange   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
198057fe9a49SVaclav Hapla   PetscValidLogicalCollectiveInt(dm, overlap, 2);
1981a157612eSMichael Lange   if (sf) PetscValidPointer(sf, 3);
1982a157612eSMichael Lange   PetscValidPointer(dmOverlap, 4);
1983a157612eSMichael Lange 
19840c86c063SLisandro Dalcin   if (sf) *sf = NULL;
19850c86c063SLisandro Dalcin   *dmOverlap = NULL;
19869566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)dm, &comm));
19879566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
19889566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(comm, &rank));
19890c86c063SLisandro Dalcin   if (size == 1) PetscFunctionReturn(0);
1990c506a872SMatthew G. Knepley   {
1991c506a872SMatthew G. Knepley     // We need to get options for the _already_distributed mesh, so it must be done here
1992c506a872SMatthew G. Knepley     PetscInt    overlap;
1993c506a872SMatthew G. Knepley     const char *prefix;
1994c506a872SMatthew G. Knepley     char        oldPrefix[PETSC_MAX_PATH_LEN];
1995a157612eSMichael Lange 
1996c506a872SMatthew G. Knepley     oldPrefix[0] = '\0';
1997c506a872SMatthew G. Knepley     PetscCall(PetscObjectGetOptionsPrefix((PetscObject)dm, &prefix));
1998c506a872SMatthew G. Knepley     PetscCall(PetscStrcpy(oldPrefix, prefix));
1999c506a872SMatthew G. Knepley     PetscCall(PetscObjectAppendOptionsPrefix((PetscObject)dm, "dist_"));
2000c506a872SMatthew G. Knepley     PetscCall(DMPlexGetOverlap(dm, &overlap));
2001c506a872SMatthew G. Knepley     PetscObjectOptionsBegin((PetscObject)dm);
2002dbbe0bcdSBarry Smith     PetscCall(DMSetFromOptions_Overlap_Plex(dm, PetscOptionsObject, &overlap));
2003c506a872SMatthew G. Knepley     PetscOptionsEnd();
2004c506a872SMatthew G. Knepley     PetscCall(PetscObjectSetOptionsPrefix((PetscObject)dm, oldPrefix[0] == '\0' ? NULL : oldPrefix));
2005c506a872SMatthew G. Knepley   }
20069566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(DMPLEX_DistributeOverlap, dm, 0, 0, 0));
2007a157612eSMichael Lange   /* Compute point overlap with neighbouring processes on the distributed DM */
20089566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(DMPLEX_Partition, dm, 0, 0, 0));
20099566063dSJacob Faibussowitsch   PetscCall(PetscSectionCreate(comm, &rootSection));
20109566063dSJacob Faibussowitsch   PetscCall(PetscSectionCreate(comm, &leafSection));
20119566063dSJacob Faibussowitsch   PetscCall(DMPlexDistributeOwnership(dm, rootSection, &rootrank, leafSection, &leafrank));
2012c506a872SMatthew G. Knepley   if (mesh->numOvLabels) PetscCall(DMPlexCreateOverlapLabelFromLabels(dm, mesh->numOvLabels, mesh->ovLabels, mesh->ovValues, mesh->numOvExLabels, mesh->ovExLabels, mesh->ovExValues, rootSection, rootrank, leafSection, leafrank, &lblOverlap));
2013c506a872SMatthew G. Knepley   else PetscCall(DMPlexCreateOverlapLabel(dm, overlap, rootSection, rootrank, leafSection, leafrank, &lblOverlap));
2014a9f1d5b2SMichael Lange   /* Convert overlap label to stratified migration SF */
20159566063dSJacob Faibussowitsch   PetscCall(DMPlexPartitionLabelCreateSF(dm, lblOverlap, &sfOverlap));
20169566063dSJacob Faibussowitsch   PetscCall(DMPlexStratifyMigrationSF(dm, sfOverlap, &sfStratified));
20179566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&sfOverlap));
2018a9f1d5b2SMichael Lange   sfOverlap = sfStratified;
20199566063dSJacob Faibussowitsch   PetscCall(PetscObjectSetName((PetscObject)sfOverlap, "Overlap SF"));
20209566063dSJacob Faibussowitsch   PetscCall(PetscSFSetFromOptions(sfOverlap));
2021a9f1d5b2SMichael Lange 
20229566063dSJacob Faibussowitsch   PetscCall(PetscSectionDestroy(&rootSection));
20239566063dSJacob Faibussowitsch   PetscCall(PetscSectionDestroy(&leafSection));
20249566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&rootrank));
20259566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&leafrank));
20269566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(DMPLEX_Partition, dm, 0, 0, 0));
2027a157612eSMichael Lange 
2028a157612eSMichael Lange   /* Build the overlapping DM */
20299566063dSJacob Faibussowitsch   PetscCall(DMPlexCreate(comm, dmOverlap));
20309566063dSJacob Faibussowitsch   PetscCall(PetscObjectSetName((PetscObject)*dmOverlap, "Parallel Mesh"));
20319566063dSJacob Faibussowitsch   PetscCall(DMPlexMigrate(dm, sfOverlap, *dmOverlap));
2032cb54e036SVaclav Hapla   /* Store the overlap in the new DM */
203360667520SVaclav Hapla   PetscCall(DMPlexSetOverlap_Plex(*dmOverlap, dm, overlap));
2034f5bf2dbfSMichael Lange   /* Build the new point SF */
20359566063dSJacob Faibussowitsch   PetscCall(DMPlexCreatePointSF(*dmOverlap, sfOverlap, PETSC_FALSE, &sfPoint));
20369566063dSJacob Faibussowitsch   PetscCall(DMSetPointSF(*dmOverlap, sfPoint));
20379566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateDM(*dmOverlap, &dmCoord));
20389566063dSJacob Faibussowitsch   if (dmCoord) PetscCall(DMSetPointSF(dmCoord, sfPoint));
20396858538eSMatthew G. Knepley   PetscCall(DMGetCellCoordinateDM(*dmOverlap, &dmCoord));
20406858538eSMatthew G. Knepley   if (dmCoord) PetscCall(DMSetPointSF(dmCoord, sfPoint));
20419566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&sfPoint));
2042a157612eSMichael Lange   /* Cleanup overlap partition */
20439566063dSJacob Faibussowitsch   PetscCall(DMLabelDestroy(&lblOverlap));
2044a9f1d5b2SMichael Lange   if (sf) *sf = sfOverlap;
20459566063dSJacob Faibussowitsch   else PetscCall(PetscSFDestroy(&sfOverlap));
20469566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(DMPLEX_DistributeOverlap, dm, 0, 0, 0));
2047a157612eSMichael Lange   PetscFunctionReturn(0);
2048a157612eSMichael Lange }
20496462276dSToby Isaac 
20509371c9d4SSatish Balay PetscErrorCode DMPlexGetOverlap_Plex(DM dm, PetscInt *overlap) {
2051cb54e036SVaclav Hapla   DM_Plex *mesh = (DM_Plex *)dm->data;
2052cb54e036SVaclav Hapla 
2053cb54e036SVaclav Hapla   PetscFunctionBegin;
2054cb54e036SVaclav Hapla   *overlap = mesh->overlap;
2055cb54e036SVaclav Hapla   PetscFunctionReturn(0);
2056cb54e036SVaclav Hapla }
2057cb54e036SVaclav Hapla 
20589371c9d4SSatish Balay PetscErrorCode DMPlexSetOverlap_Plex(DM dm, DM dmSrc, PetscInt overlap) {
205960667520SVaclav Hapla   DM_Plex *mesh    = NULL;
206060667520SVaclav Hapla   DM_Plex *meshSrc = NULL;
206160667520SVaclav Hapla 
206260667520SVaclav Hapla   PetscFunctionBegin;
206360667520SVaclav Hapla   PetscValidHeaderSpecificType(dm, DM_CLASSID, 1, DMPLEX);
206460667520SVaclav Hapla   mesh          = (DM_Plex *)dm->data;
206560667520SVaclav Hapla   mesh->overlap = overlap;
206660667520SVaclav Hapla   if (dmSrc) {
206760667520SVaclav Hapla     PetscValidHeaderSpecificType(dmSrc, DM_CLASSID, 2, DMPLEX);
206860667520SVaclav Hapla     meshSrc = (DM_Plex *)dmSrc->data;
206960667520SVaclav Hapla     mesh->overlap += meshSrc->overlap;
207060667520SVaclav Hapla   }
207160667520SVaclav Hapla   PetscFunctionReturn(0);
207260667520SVaclav Hapla }
207360667520SVaclav Hapla 
2074cb54e036SVaclav Hapla /*@
2075c506a872SMatthew G. Knepley   DMPlexGetOverlap - Get the width of the cell overlap
2076cb54e036SVaclav Hapla 
2077cb54e036SVaclav Hapla   Not collective
2078cb54e036SVaclav Hapla 
2079cb54e036SVaclav Hapla   Input Parameter:
2080cb54e036SVaclav Hapla . dm   - The DM
2081cb54e036SVaclav Hapla 
2082064ec1f3Sprj-   Output Parameter:
2083c506a872SMatthew G. Knepley . overlap - the width of the cell overlap
2084cb54e036SVaclav Hapla 
2085cb54e036SVaclav Hapla   Level: intermediate
2086cb54e036SVaclav Hapla 
2087c506a872SMatthew G. Knepley .seealso: `DMPlexSetOverlap()`, `DMPlexDistribute()`
2088cb54e036SVaclav Hapla @*/
20899371c9d4SSatish Balay PetscErrorCode DMPlexGetOverlap(DM dm, PetscInt *overlap) {
2090cb54e036SVaclav Hapla   PetscFunctionBegin;
2091cb54e036SVaclav Hapla   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
2092c506a872SMatthew G. Knepley   PetscValidIntPointer(overlap, 2);
2093cac4c232SBarry Smith   PetscUseMethod(dm, "DMPlexGetOverlap_C", (DM, PetscInt *), (dm, overlap));
2094cb54e036SVaclav Hapla   PetscFunctionReturn(0);
2095cb54e036SVaclav Hapla }
2096cb54e036SVaclav Hapla 
2097c506a872SMatthew G. Knepley /*@
2098c506a872SMatthew G. Knepley   DMPlexSetOverlap - Set the width of the cell overlap
2099c506a872SMatthew G. Knepley 
2100c506a872SMatthew G. Knepley   Logically collective
2101c506a872SMatthew G. Knepley 
2102c506a872SMatthew G. Knepley   Input Parameters:
2103c506a872SMatthew G. Knepley + dm      - The DM
2104c506a872SMatthew G. Knepley . dmSrc   - The DM that produced this one, or NULL
2105c506a872SMatthew G. Knepley - overlap - the width of the cell overlap
2106c506a872SMatthew G. Knepley 
2107c506a872SMatthew G. Knepley   Note:
2108c506a872SMatthew G. Knepley   The overlap from dmSrc is added to dm
2109c506a872SMatthew G. Knepley 
2110c506a872SMatthew G. Knepley   Level: intermediate
2111c506a872SMatthew G. Knepley 
2112c506a872SMatthew G. Knepley .seealso: `DMPlexGetOverlap()`, `DMPlexDistribute()`
2113c506a872SMatthew G. Knepley @*/
21149371c9d4SSatish Balay PetscErrorCode DMPlexSetOverlap(DM dm, DM dmSrc, PetscInt overlap) {
2115c506a872SMatthew G. Knepley   PetscFunctionBegin;
2116c506a872SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
2117c506a872SMatthew G. Knepley   PetscValidLogicalCollectiveInt(dm, overlap, 3);
2118c506a872SMatthew G. Knepley   PetscTryMethod(dm, "DMPlexSetOverlap_C", (DM, DM, PetscInt), (dm, dmSrc, overlap));
2119c506a872SMatthew G. Knepley   PetscFunctionReturn(0);
2120c506a872SMatthew G. Knepley }
2121c506a872SMatthew G. Knepley 
21229371c9d4SSatish Balay PetscErrorCode DMPlexDistributeSetDefault_Plex(DM dm, PetscBool dist) {
2123e600fa54SMatthew G. Knepley   DM_Plex *mesh = (DM_Plex *)dm->data;
2124e600fa54SMatthew G. Knepley 
2125e600fa54SMatthew G. Knepley   PetscFunctionBegin;
2126e600fa54SMatthew G. Knepley   mesh->distDefault = dist;
2127e600fa54SMatthew G. Knepley   PetscFunctionReturn(0);
2128e600fa54SMatthew G. Knepley }
2129e600fa54SMatthew G. Knepley 
2130e600fa54SMatthew G. Knepley /*@
2131e600fa54SMatthew G. Knepley   DMPlexDistributeSetDefault - Set flag indicating whether the DM should be distributed by default
2132e600fa54SMatthew G. Knepley 
2133e600fa54SMatthew G. Knepley   Logically collective
2134e600fa54SMatthew G. Knepley 
2135e600fa54SMatthew G. Knepley   Input Parameters:
2136e600fa54SMatthew G. Knepley + dm   - The DM
2137e600fa54SMatthew G. Knepley - dist - Flag for distribution
2138e600fa54SMatthew G. Knepley 
2139e600fa54SMatthew G. Knepley   Level: intermediate
2140e600fa54SMatthew G. Knepley 
21419e70506fSSatish Balay .seealso: `DMPlexDistributeGetDefault()`, `DMPlexDistribute()`
2142e600fa54SMatthew G. Knepley @*/
21439371c9d4SSatish Balay PetscErrorCode DMPlexDistributeSetDefault(DM dm, PetscBool dist) {
2144e600fa54SMatthew G. Knepley   PetscFunctionBegin;
2145e600fa54SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
2146e600fa54SMatthew G. Knepley   PetscValidLogicalCollectiveBool(dm, dist, 2);
2147cac4c232SBarry Smith   PetscTryMethod(dm, "DMPlexDistributeSetDefault_C", (DM, PetscBool), (dm, dist));
2148e600fa54SMatthew G. Knepley   PetscFunctionReturn(0);
2149e600fa54SMatthew G. Knepley }
2150e600fa54SMatthew G. Knepley 
21519371c9d4SSatish Balay PetscErrorCode DMPlexDistributeGetDefault_Plex(DM dm, PetscBool *dist) {
2152e600fa54SMatthew G. Knepley   DM_Plex *mesh = (DM_Plex *)dm->data;
2153e600fa54SMatthew G. Knepley 
2154e600fa54SMatthew G. Knepley   PetscFunctionBegin;
2155e600fa54SMatthew G. Knepley   *dist = mesh->distDefault;
2156e600fa54SMatthew G. Knepley   PetscFunctionReturn(0);
2157e600fa54SMatthew G. Knepley }
2158e600fa54SMatthew G. Knepley 
2159e600fa54SMatthew G. Knepley /*@
2160e600fa54SMatthew G. Knepley   DMPlexDistributeGetDefault - Get flag indicating whether the DM should be distributed by default
2161e600fa54SMatthew G. Knepley 
2162e600fa54SMatthew G. Knepley   Not collective
2163e600fa54SMatthew G. Knepley 
2164e600fa54SMatthew G. Knepley   Input Parameter:
2165e600fa54SMatthew G. Knepley . dm   - The DM
2166e600fa54SMatthew G. Knepley 
2167e600fa54SMatthew G. Knepley   Output Parameter:
2168e600fa54SMatthew G. Knepley . dist - Flag for distribution
2169e600fa54SMatthew G. Knepley 
2170e600fa54SMatthew G. Knepley   Level: intermediate
2171e600fa54SMatthew G. Knepley 
21729e70506fSSatish Balay .seealso: `DMPlexDistributeSetDefault()`, `DMPlexDistribute()`
2173e600fa54SMatthew G. Knepley @*/
21749371c9d4SSatish Balay PetscErrorCode DMPlexDistributeGetDefault(DM dm, PetscBool *dist) {
2175e600fa54SMatthew G. Knepley   PetscFunctionBegin;
2176e600fa54SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
2177e600fa54SMatthew G. Knepley   PetscValidBoolPointer(dist, 2);
2178cac4c232SBarry Smith   PetscUseMethod(dm, "DMPlexDistributeGetDefault_C", (DM, PetscBool *), (dm, dist));
2179e600fa54SMatthew G. Knepley   PetscFunctionReturn(0);
2180e600fa54SMatthew G. Knepley }
2181e600fa54SMatthew G. Knepley 
21826462276dSToby Isaac /*@C
21836462276dSToby Isaac   DMPlexGetGatherDM - Get a copy of the DMPlex that gathers all points on the
21846462276dSToby Isaac   root process of the original's communicator.
21856462276dSToby Isaac 
2186d083f849SBarry Smith   Collective on dm
218783655b49SVáclav Hapla 
2188064ec1f3Sprj-   Input Parameter:
21896462276dSToby Isaac . dm - the original DMPlex object
21906462276dSToby Isaac 
21916462276dSToby Isaac   Output Parameters:
2192a13df41bSStefano Zampini + sf - the PetscSF used for point distribution (optional)
2193a13df41bSStefano Zampini - gatherMesh - the gathered DM object, or NULL
21946462276dSToby Isaac 
21956462276dSToby Isaac   Level: intermediate
21966462276dSToby Isaac 
2197db781477SPatrick Sanan .seealso: `DMPlexDistribute()`, `DMPlexGetRedundantDM()`
21986462276dSToby Isaac @*/
21999371c9d4SSatish Balay PetscErrorCode DMPlexGetGatherDM(DM dm, PetscSF *sf, DM *gatherMesh) {
22006462276dSToby Isaac   MPI_Comm         comm;
22016462276dSToby Isaac   PetscMPIInt      size;
22026462276dSToby Isaac   PetscPartitioner oldPart, gatherPart;
22036462276dSToby Isaac 
22046462276dSToby Isaac   PetscFunctionBegin;
22056462276dSToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
2206064a246eSJacob Faibussowitsch   PetscValidPointer(gatherMesh, 3);
22070c86c063SLisandro Dalcin   *gatherMesh = NULL;
2208a13df41bSStefano Zampini   if (sf) *sf = NULL;
22096462276dSToby Isaac   comm = PetscObjectComm((PetscObject)dm);
22109566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
22116462276dSToby Isaac   if (size == 1) PetscFunctionReturn(0);
22129566063dSJacob Faibussowitsch   PetscCall(DMPlexGetPartitioner(dm, &oldPart));
22139566063dSJacob Faibussowitsch   PetscCall(PetscObjectReference((PetscObject)oldPart));
22149566063dSJacob Faibussowitsch   PetscCall(PetscPartitionerCreate(comm, &gatherPart));
22159566063dSJacob Faibussowitsch   PetscCall(PetscPartitionerSetType(gatherPart, PETSCPARTITIONERGATHER));
22169566063dSJacob Faibussowitsch   PetscCall(DMPlexSetPartitioner(dm, gatherPart));
22179566063dSJacob Faibussowitsch   PetscCall(DMPlexDistribute(dm, 0, sf, gatherMesh));
2218a13df41bSStefano Zampini 
22199566063dSJacob Faibussowitsch   PetscCall(DMPlexSetPartitioner(dm, oldPart));
22209566063dSJacob Faibussowitsch   PetscCall(PetscPartitionerDestroy(&gatherPart));
22219566063dSJacob Faibussowitsch   PetscCall(PetscPartitionerDestroy(&oldPart));
22226462276dSToby Isaac   PetscFunctionReturn(0);
22236462276dSToby Isaac }
22246462276dSToby Isaac 
22256462276dSToby Isaac /*@C
22266462276dSToby Isaac   DMPlexGetRedundantDM - Get a copy of the DMPlex that is completely copied on each process.
22276462276dSToby Isaac 
2228d083f849SBarry Smith   Collective on dm
222983655b49SVáclav Hapla 
2230064ec1f3Sprj-   Input Parameter:
22316462276dSToby Isaac . dm - the original DMPlex object
22326462276dSToby Isaac 
22336462276dSToby Isaac   Output Parameters:
2234a13df41bSStefano Zampini + sf - the PetscSF used for point distribution (optional)
2235a13df41bSStefano Zampini - redundantMesh - the redundant DM object, or NULL
22366462276dSToby Isaac 
22376462276dSToby Isaac   Level: intermediate
22386462276dSToby Isaac 
2239db781477SPatrick Sanan .seealso: `DMPlexDistribute()`, `DMPlexGetGatherDM()`
22406462276dSToby Isaac @*/
22419371c9d4SSatish Balay PetscErrorCode DMPlexGetRedundantDM(DM dm, PetscSF *sf, DM *redundantMesh) {
22426462276dSToby Isaac   MPI_Comm     comm;
22436462276dSToby Isaac   PetscMPIInt  size, rank;
22446462276dSToby Isaac   PetscInt     pStart, pEnd, p;
22456462276dSToby Isaac   PetscInt     numPoints = -1;
2246a13df41bSStefano Zampini   PetscSF      migrationSF, sfPoint, gatherSF;
22476462276dSToby Isaac   DM           gatherDM, dmCoord;
22486462276dSToby Isaac   PetscSFNode *points;
22496462276dSToby Isaac 
22506462276dSToby Isaac   PetscFunctionBegin;
22516462276dSToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
2252064a246eSJacob Faibussowitsch   PetscValidPointer(redundantMesh, 3);
22530c86c063SLisandro Dalcin   *redundantMesh = NULL;
22546462276dSToby Isaac   comm           = PetscObjectComm((PetscObject)dm);
22559566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
225668dbc166SMatthew G. Knepley   if (size == 1) {
22579566063dSJacob Faibussowitsch     PetscCall(PetscObjectReference((PetscObject)dm));
225868dbc166SMatthew G. Knepley     *redundantMesh = dm;
2259a13df41bSStefano Zampini     if (sf) *sf = NULL;
226068dbc166SMatthew G. Knepley     PetscFunctionReturn(0);
226168dbc166SMatthew G. Knepley   }
22629566063dSJacob Faibussowitsch   PetscCall(DMPlexGetGatherDM(dm, &gatherSF, &gatherDM));
22636462276dSToby Isaac   if (!gatherDM) PetscFunctionReturn(0);
22649566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(comm, &rank));
22659566063dSJacob Faibussowitsch   PetscCall(DMPlexGetChart(gatherDM, &pStart, &pEnd));
22666462276dSToby Isaac   numPoints = pEnd - pStart;
22679566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Bcast(&numPoints, 1, MPIU_INT, 0, comm));
22689566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(numPoints, &points));
22699566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(comm, &migrationSF));
22706462276dSToby Isaac   for (p = 0; p < numPoints; p++) {
22716462276dSToby Isaac     points[p].index = p;
22726462276dSToby Isaac     points[p].rank  = 0;
22736462276dSToby Isaac   }
22749566063dSJacob Faibussowitsch   PetscCall(PetscSFSetGraph(migrationSF, pEnd - pStart, numPoints, NULL, PETSC_OWN_POINTER, points, PETSC_OWN_POINTER));
22759566063dSJacob Faibussowitsch   PetscCall(DMPlexCreate(comm, redundantMesh));
22769566063dSJacob Faibussowitsch   PetscCall(PetscObjectSetName((PetscObject)*redundantMesh, "Redundant Mesh"));
22779566063dSJacob Faibussowitsch   PetscCall(DMPlexMigrate(gatherDM, migrationSF, *redundantMesh));
22782e28cf0cSVaclav Hapla   /* This is to express that all point are in overlap */
22792e28cf0cSVaclav Hapla   PetscCall(DMPlexSetOverlap_Plex(*redundantMesh, NULL, PETSC_MAX_INT));
22809566063dSJacob Faibussowitsch   PetscCall(DMPlexCreatePointSF(*redundantMesh, migrationSF, PETSC_FALSE, &sfPoint));
22819566063dSJacob Faibussowitsch   PetscCall(DMSetPointSF(*redundantMesh, sfPoint));
22829566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateDM(*redundantMesh, &dmCoord));
22839566063dSJacob Faibussowitsch   if (dmCoord) PetscCall(DMSetPointSF(dmCoord, sfPoint));
22849566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&sfPoint));
2285a13df41bSStefano Zampini   if (sf) {
2286a13df41bSStefano Zampini     PetscSF tsf;
2287a13df41bSStefano Zampini 
22889566063dSJacob Faibussowitsch     PetscCall(PetscSFCompose(gatherSF, migrationSF, &tsf));
22899566063dSJacob Faibussowitsch     PetscCall(DMPlexStratifyMigrationSF(dm, tsf, sf));
22909566063dSJacob Faibussowitsch     PetscCall(PetscSFDestroy(&tsf));
2291a13df41bSStefano Zampini   }
22929566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&migrationSF));
22939566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&gatherSF));
22949566063dSJacob Faibussowitsch   PetscCall(DMDestroy(&gatherDM));
22959566063dSJacob Faibussowitsch   PetscCall(DMCopyDisc(dm, *redundantMesh));
22965de52c6dSVaclav Hapla   PetscCall(DMPlexCopy_Internal(dm, PETSC_TRUE, PETSC_FALSE, *redundantMesh));
22976462276dSToby Isaac   PetscFunctionReturn(0);
22986462276dSToby Isaac }
22995fa78c88SVaclav Hapla 
23005fa78c88SVaclav Hapla /*@
23015fa78c88SVaclav Hapla   DMPlexIsDistributed - Find out whether this DM is distributed, i.e. more than one rank owns some points.
23025fa78c88SVaclav Hapla 
23035fa78c88SVaclav Hapla   Collective
23045fa78c88SVaclav Hapla 
23055fa78c88SVaclav Hapla   Input Parameter:
23065fa78c88SVaclav Hapla . dm      - The DM object
23075fa78c88SVaclav Hapla 
23085fa78c88SVaclav Hapla   Output Parameter:
23095fa78c88SVaclav Hapla . distributed - Flag whether the DM is distributed
23105fa78c88SVaclav Hapla 
23115fa78c88SVaclav Hapla   Level: intermediate
23125fa78c88SVaclav Hapla 
23135fa78c88SVaclav Hapla   Notes:
23145fa78c88SVaclav Hapla   This currently finds out whether at least two ranks have any DAG points.
23155fa78c88SVaclav Hapla   This involves MPI_Allreduce() with one integer.
23165fa78c88SVaclav Hapla   The result is currently not stashed so every call to this routine involves this global communication.
23175fa78c88SVaclav Hapla 
2318db781477SPatrick Sanan .seealso: `DMPlexDistribute()`, `DMPlexGetOverlap()`, `DMPlexIsInterpolated()`
23195fa78c88SVaclav Hapla @*/
23209371c9d4SSatish Balay PetscErrorCode DMPlexIsDistributed(DM dm, PetscBool *distributed) {
23215fa78c88SVaclav Hapla   PetscInt    pStart, pEnd, count;
23225fa78c88SVaclav Hapla   MPI_Comm    comm;
232335d70e31SStefano Zampini   PetscMPIInt size;
23245fa78c88SVaclav Hapla 
23255fa78c88SVaclav Hapla   PetscFunctionBegin;
23265fa78c88SVaclav Hapla   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
2327dadcf809SJacob Faibussowitsch   PetscValidBoolPointer(distributed, 2);
23289566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)dm, &comm));
23299566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
23309371c9d4SSatish Balay   if (size == 1) {
23319371c9d4SSatish Balay     *distributed = PETSC_FALSE;
23329371c9d4SSatish Balay     PetscFunctionReturn(0);
23339371c9d4SSatish Balay   }
23349566063dSJacob Faibussowitsch   PetscCall(DMPlexGetChart(dm, &pStart, &pEnd));
233535d70e31SStefano Zampini   count = (pEnd - pStart) > 0 ? 1 : 0;
23369566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Allreduce(MPI_IN_PLACE, &count, 1, MPIU_INT, MPI_SUM, comm));
23375fa78c88SVaclav Hapla   *distributed = count > 1 ? PETSC_TRUE : PETSC_FALSE;
23385fa78c88SVaclav Hapla   PetscFunctionReturn(0);
23395fa78c88SVaclav Hapla }
2340