1af0996ceSBarry Smith #include <petsc/private/dmpleximpl.h> /*I "petscdmplex.h" I*/ 2c58f1c22SToby Isaac #include <petsc/private/dmlabelimpl.h> /*I "petscdmlabel.h" I*/ 370034214SMatthew G. Knepley 43c1f0c11SLawrence Mitchell /*@C 53c1f0c11SLawrence Mitchell DMPlexSetAdjacencyUser - Define adjacency in the mesh using a user-provided callback 63c1f0c11SLawrence Mitchell 73c1f0c11SLawrence Mitchell Input Parameters: 83c1f0c11SLawrence Mitchell + dm - The DM object 93c1f0c11SLawrence Mitchell . user - The user callback, may be NULL (to clear the callback) 103c1f0c11SLawrence Mitchell - ctx - context for callback evaluation, may be NULL 113c1f0c11SLawrence Mitchell 123c1f0c11SLawrence Mitchell Level: advanced 133c1f0c11SLawrence Mitchell 143c1f0c11SLawrence Mitchell Notes: 153c1f0c11SLawrence Mitchell The caller of DMPlexGetAdjacency may need to arrange that a large enough array is available for the adjacency. 163c1f0c11SLawrence Mitchell 173c1f0c11SLawrence Mitchell Any setting here overrides other configuration of DMPlex adjacency determination. 183c1f0c11SLawrence Mitchell 19db781477SPatrick Sanan .seealso: `DMSetAdjacency()`, `DMPlexDistribute()`, `DMPlexPreallocateOperator()`, `DMPlexGetAdjacency()`, `DMPlexGetAdjacencyUser()` 203c1f0c11SLawrence Mitchell @*/ 219371c9d4SSatish Balay PetscErrorCode DMPlexSetAdjacencyUser(DM dm, PetscErrorCode (*user)(DM, PetscInt, PetscInt *, PetscInt[], void *), void *ctx) { 223c1f0c11SLawrence Mitchell DM_Plex *mesh = (DM_Plex *)dm->data; 233c1f0c11SLawrence Mitchell 243c1f0c11SLawrence Mitchell PetscFunctionBegin; 253c1f0c11SLawrence Mitchell PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 263c1f0c11SLawrence Mitchell mesh->useradjacency = user; 273c1f0c11SLawrence Mitchell mesh->useradjacencyctx = ctx; 283c1f0c11SLawrence Mitchell PetscFunctionReturn(0); 293c1f0c11SLawrence Mitchell } 303c1f0c11SLawrence Mitchell 313c1f0c11SLawrence Mitchell /*@C 323c1f0c11SLawrence Mitchell DMPlexGetAdjacencyUser - get the user-defined adjacency callback 333c1f0c11SLawrence Mitchell 343c1f0c11SLawrence Mitchell Input Parameter: 353c1f0c11SLawrence Mitchell . dm - The DM object 363c1f0c11SLawrence Mitchell 373c1f0c11SLawrence Mitchell Output Parameters: 38ef1023bdSBarry Smith + user - The callback 393c1f0c11SLawrence Mitchell - ctx - context for callback evaluation 403c1f0c11SLawrence Mitchell 413c1f0c11SLawrence Mitchell Level: advanced 423c1f0c11SLawrence Mitchell 43db781477SPatrick Sanan .seealso: `DMSetAdjacency()`, `DMPlexDistribute()`, `DMPlexPreallocateOperator()`, `DMPlexGetAdjacency()`, `DMPlexSetAdjacencyUser()` 443c1f0c11SLawrence Mitchell @*/ 459371c9d4SSatish Balay PetscErrorCode DMPlexGetAdjacencyUser(DM dm, PetscErrorCode (**user)(DM, PetscInt, PetscInt *, PetscInt[], void *), void **ctx) { 463c1f0c11SLawrence Mitchell DM_Plex *mesh = (DM_Plex *)dm->data; 473c1f0c11SLawrence Mitchell 483c1f0c11SLawrence Mitchell PetscFunctionBegin; 493c1f0c11SLawrence Mitchell PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 503c1f0c11SLawrence Mitchell if (user) *user = mesh->useradjacency; 513c1f0c11SLawrence Mitchell if (ctx) *ctx = mesh->useradjacencyctx; 523c1f0c11SLawrence Mitchell PetscFunctionReturn(0); 533c1f0c11SLawrence Mitchell } 543c1f0c11SLawrence Mitchell 5570034214SMatthew G. Knepley /*@ 56a17985deSToby Isaac DMPlexSetAdjacencyUseAnchors - Define adjacency in the mesh using the point-to-point constraints. 578b0b4c70SToby Isaac 588b0b4c70SToby Isaac Input Parameters: 598b0b4c70SToby Isaac + dm - The DM object 605b317d89SToby Isaac - useAnchors - Flag to use the constraints. If PETSC_TRUE, then constrained points are omitted from DMPlexGetAdjacency(), and their anchor points appear in their place. 618b0b4c70SToby Isaac 628b0b4c70SToby Isaac Level: intermediate 638b0b4c70SToby Isaac 64db781477SPatrick Sanan .seealso: `DMGetAdjacency()`, `DMSetAdjacency()`, `DMPlexDistribute()`, `DMPlexPreallocateOperator()`, `DMPlexSetAnchors()` 658b0b4c70SToby Isaac @*/ 669371c9d4SSatish Balay PetscErrorCode DMPlexSetAdjacencyUseAnchors(DM dm, PetscBool useAnchors) { 678b0b4c70SToby Isaac DM_Plex *mesh = (DM_Plex *)dm->data; 688b0b4c70SToby Isaac 698b0b4c70SToby Isaac PetscFunctionBegin; 708b0b4c70SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 715b317d89SToby Isaac mesh->useAnchors = useAnchors; 728b0b4c70SToby Isaac PetscFunctionReturn(0); 738b0b4c70SToby Isaac } 748b0b4c70SToby Isaac 758b0b4c70SToby Isaac /*@ 76a17985deSToby Isaac DMPlexGetAdjacencyUseAnchors - Query whether adjacency in the mesh uses the point-to-point constraints. 778b0b4c70SToby Isaac 788b0b4c70SToby Isaac Input Parameter: 798b0b4c70SToby Isaac . dm - The DM object 808b0b4c70SToby Isaac 818b0b4c70SToby Isaac Output Parameter: 825b317d89SToby Isaac . useAnchors - Flag to use the closure. If PETSC_TRUE, then constrained points are omitted from DMPlexGetAdjacency(), and their anchor points appear in their place. 838b0b4c70SToby Isaac 848b0b4c70SToby Isaac Level: intermediate 858b0b4c70SToby Isaac 86db781477SPatrick Sanan .seealso: `DMPlexSetAdjacencyUseAnchors()`, `DMSetAdjacency()`, `DMGetAdjacency()`, `DMPlexDistribute()`, `DMPlexPreallocateOperator()`, `DMPlexSetAnchors()` 878b0b4c70SToby Isaac @*/ 889371c9d4SSatish Balay PetscErrorCode DMPlexGetAdjacencyUseAnchors(DM dm, PetscBool *useAnchors) { 898b0b4c70SToby Isaac DM_Plex *mesh = (DM_Plex *)dm->data; 908b0b4c70SToby Isaac 918b0b4c70SToby Isaac PetscFunctionBegin; 928b0b4c70SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 93064a246eSJacob Faibussowitsch PetscValidBoolPointer(useAnchors, 2); 945b317d89SToby Isaac *useAnchors = mesh->useAnchors; 958b0b4c70SToby Isaac PetscFunctionReturn(0); 968b0b4c70SToby Isaac } 978b0b4c70SToby Isaac 989371c9d4SSatish Balay static PetscErrorCode DMPlexGetAdjacency_Cone_Internal(DM dm, PetscInt p, PetscInt *adjSize, PetscInt adj[]) { 9970034214SMatthew G. Knepley const PetscInt *cone = NULL; 10070034214SMatthew G. Knepley PetscInt numAdj = 0, maxAdjSize = *adjSize, coneSize, c; 10170034214SMatthew G. Knepley 10270034214SMatthew G. Knepley PetscFunctionBeginHot; 1039566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, p, &coneSize)); 1049566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, p, &cone)); 1054b6b44bdSMatthew G. Knepley for (c = 0; c <= coneSize; ++c) { 1064b6b44bdSMatthew G. Knepley const PetscInt point = !c ? p : cone[c - 1]; 10770034214SMatthew G. Knepley const PetscInt *support = NULL; 10870034214SMatthew G. Knepley PetscInt supportSize, s, q; 10970034214SMatthew G. Knepley 1109566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dm, point, &supportSize)); 1119566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(dm, point, &support)); 11270034214SMatthew G. Knepley for (s = 0; s < supportSize; ++s) { 113527e7439SSatish Balay for (q = 0; q < numAdj || ((void)(adj[numAdj++] = support[s]), 0); ++q) { 11470034214SMatthew G. Knepley if (support[s] == adj[q]) break; 11570034214SMatthew G. Knepley } 11663a3b9bcSJacob Faibussowitsch PetscCheck(numAdj <= maxAdjSize, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid mesh exceeded adjacency allocation (%" PetscInt_FMT ")", maxAdjSize); 11770034214SMatthew G. Knepley } 11870034214SMatthew G. Knepley } 11970034214SMatthew G. Knepley *adjSize = numAdj; 12070034214SMatthew G. Knepley PetscFunctionReturn(0); 12170034214SMatthew G. Knepley } 12270034214SMatthew G. Knepley 1239371c9d4SSatish Balay static PetscErrorCode DMPlexGetAdjacency_Support_Internal(DM dm, PetscInt p, PetscInt *adjSize, PetscInt adj[]) { 12470034214SMatthew G. Knepley const PetscInt *support = NULL; 12570034214SMatthew G. Knepley PetscInt numAdj = 0, maxAdjSize = *adjSize, supportSize, s; 12670034214SMatthew G. Knepley 12770034214SMatthew G. Knepley PetscFunctionBeginHot; 1289566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dm, p, &supportSize)); 1299566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(dm, p, &support)); 1304b6b44bdSMatthew G. Knepley for (s = 0; s <= supportSize; ++s) { 1314b6b44bdSMatthew G. Knepley const PetscInt point = !s ? p : support[s - 1]; 13270034214SMatthew G. Knepley const PetscInt *cone = NULL; 13370034214SMatthew G. Knepley PetscInt coneSize, c, q; 13470034214SMatthew G. Knepley 1359566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, point, &coneSize)); 1369566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, point, &cone)); 13770034214SMatthew G. Knepley for (c = 0; c < coneSize; ++c) { 138527e7439SSatish Balay for (q = 0; q < numAdj || ((void)(adj[numAdj++] = cone[c]), 0); ++q) { 13970034214SMatthew G. Knepley if (cone[c] == adj[q]) break; 14070034214SMatthew G. Knepley } 14163a3b9bcSJacob Faibussowitsch PetscCheck(numAdj <= maxAdjSize, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid mesh exceeded adjacency allocation (%" PetscInt_FMT ")", maxAdjSize); 14270034214SMatthew G. Knepley } 14370034214SMatthew G. Knepley } 14470034214SMatthew G. Knepley *adjSize = numAdj; 14570034214SMatthew G. Knepley PetscFunctionReturn(0); 14670034214SMatthew G. Knepley } 14770034214SMatthew G. Knepley 1489371c9d4SSatish Balay static PetscErrorCode DMPlexGetAdjacency_Transitive_Internal(DM dm, PetscInt p, PetscBool useClosure, PetscInt *adjSize, PetscInt adj[]) { 14970034214SMatthew G. Knepley PetscInt *star = NULL; 15070034214SMatthew G. Knepley PetscInt numAdj = 0, maxAdjSize = *adjSize, starSize, s; 15170034214SMatthew G. Knepley 15270034214SMatthew G. Knepley PetscFunctionBeginHot; 1539566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(dm, p, useClosure, &starSize, &star)); 15470034214SMatthew G. Knepley for (s = 0; s < starSize * 2; s += 2) { 15570034214SMatthew G. Knepley const PetscInt *closure = NULL; 15670034214SMatthew G. Knepley PetscInt closureSize, c, q; 15770034214SMatthew G. Knepley 1589566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(dm, star[s], (PetscBool)!useClosure, &closureSize, (PetscInt **)&closure)); 15970034214SMatthew G. Knepley for (c = 0; c < closureSize * 2; c += 2) { 160527e7439SSatish Balay for (q = 0; q < numAdj || ((void)(adj[numAdj++] = closure[c]), 0); ++q) { 16170034214SMatthew G. Knepley if (closure[c] == adj[q]) break; 16270034214SMatthew G. Knepley } 16363a3b9bcSJacob Faibussowitsch PetscCheck(numAdj <= maxAdjSize, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid mesh exceeded adjacency allocation (%" PetscInt_FMT ")", maxAdjSize); 16470034214SMatthew G. Knepley } 1659566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dm, star[s], (PetscBool)!useClosure, &closureSize, (PetscInt **)&closure)); 16670034214SMatthew G. Knepley } 1679566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dm, p, useClosure, &starSize, &star)); 16870034214SMatthew G. Knepley *adjSize = numAdj; 16970034214SMatthew G. Knepley PetscFunctionReturn(0); 17070034214SMatthew G. Knepley } 17170034214SMatthew G. Knepley 1729371c9d4SSatish Balay PetscErrorCode DMPlexGetAdjacency_Internal(DM dm, PetscInt p, PetscBool useCone, PetscBool useTransitiveClosure, PetscBool useAnchors, PetscInt *adjSize, PetscInt *adj[]) { 17379bad331SMatthew G. Knepley static PetscInt asiz = 0; 1748b0b4c70SToby Isaac PetscInt maxAnchors = 1; 1758b0b4c70SToby Isaac PetscInt aStart = -1, aEnd = -1; 1768b0b4c70SToby Isaac PetscInt maxAdjSize; 1778b0b4c70SToby Isaac PetscSection aSec = NULL; 1788b0b4c70SToby Isaac IS aIS = NULL; 1798b0b4c70SToby Isaac const PetscInt *anchors; 1803c1f0c11SLawrence Mitchell DM_Plex *mesh = (DM_Plex *)dm->data; 18170034214SMatthew G. Knepley 18270034214SMatthew G. Knepley PetscFunctionBeginHot; 1835b317d89SToby Isaac if (useAnchors) { 1849566063dSJacob Faibussowitsch PetscCall(DMPlexGetAnchors(dm, &aSec, &aIS)); 1858b0b4c70SToby Isaac if (aSec) { 1869566063dSJacob Faibussowitsch PetscCall(PetscSectionGetMaxDof(aSec, &maxAnchors)); 18724c766afSToby Isaac maxAnchors = PetscMax(1, maxAnchors); 1889566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(aSec, &aStart, &aEnd)); 1899566063dSJacob Faibussowitsch PetscCall(ISGetIndices(aIS, &anchors)); 1908b0b4c70SToby Isaac } 1918b0b4c70SToby Isaac } 19279bad331SMatthew G. Knepley if (!*adj) { 19324c766afSToby Isaac PetscInt depth, coneSeries, supportSeries, maxC, maxS, pStart, pEnd; 19479bad331SMatthew G. Knepley 1959566063dSJacob Faibussowitsch PetscCall(DMPlexGetChart(dm, &pStart, &pEnd)); 1969566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepth(dm, &depth)); 197412e9a14SMatthew G. Knepley depth = PetscMax(depth, -depth); 1989566063dSJacob Faibussowitsch PetscCall(DMPlexGetMaxSizes(dm, &maxC, &maxS)); 19924c766afSToby Isaac coneSeries = (maxC > 1) ? ((PetscPowInt(maxC, depth + 1) - 1) / (maxC - 1)) : depth + 1; 20024c766afSToby Isaac supportSeries = (maxS > 1) ? ((PetscPowInt(maxS, depth + 1) - 1) / (maxS - 1)) : depth + 1; 20124c766afSToby Isaac asiz = PetscMax(PetscPowInt(maxS, depth) * coneSeries, PetscPowInt(maxC, depth) * supportSeries); 2028b0b4c70SToby Isaac asiz *= maxAnchors; 20324c766afSToby Isaac asiz = PetscMin(asiz, pEnd - pStart); 2049566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(asiz, adj)); 20579bad331SMatthew G. Knepley } 20679bad331SMatthew G. Knepley if (*adjSize < 0) *adjSize = asiz; 2078b0b4c70SToby Isaac maxAdjSize = *adjSize; 2083c1f0c11SLawrence Mitchell if (mesh->useradjacency) { 2099566063dSJacob Faibussowitsch PetscCall((*mesh->useradjacency)(dm, p, adjSize, *adj, mesh->useradjacencyctx)); 2103c1f0c11SLawrence Mitchell } else if (useTransitiveClosure) { 2119566063dSJacob Faibussowitsch PetscCall(DMPlexGetAdjacency_Transitive_Internal(dm, p, useCone, adjSize, *adj)); 21270034214SMatthew G. Knepley } else if (useCone) { 2139566063dSJacob Faibussowitsch PetscCall(DMPlexGetAdjacency_Cone_Internal(dm, p, adjSize, *adj)); 21470034214SMatthew G. Knepley } else { 2159566063dSJacob Faibussowitsch PetscCall(DMPlexGetAdjacency_Support_Internal(dm, p, adjSize, *adj)); 21670034214SMatthew G. Knepley } 2175b317d89SToby Isaac if (useAnchors && aSec) { 2188b0b4c70SToby Isaac PetscInt origSize = *adjSize; 2198b0b4c70SToby Isaac PetscInt numAdj = origSize; 2208b0b4c70SToby Isaac PetscInt i = 0, j; 2218b0b4c70SToby Isaac PetscInt *orig = *adj; 2228b0b4c70SToby Isaac 2238b0b4c70SToby Isaac while (i < origSize) { 2248b0b4c70SToby Isaac PetscInt p = orig[i]; 2258b0b4c70SToby Isaac PetscInt aDof = 0; 2268b0b4c70SToby Isaac 2279371c9d4SSatish Balay if (p >= aStart && p < aEnd) { PetscCall(PetscSectionGetDof(aSec, p, &aDof)); } 2288b0b4c70SToby Isaac if (aDof) { 2298b0b4c70SToby Isaac PetscInt aOff; 2308b0b4c70SToby Isaac PetscInt s, q; 2318b0b4c70SToby Isaac 2329371c9d4SSatish Balay for (j = i + 1; j < numAdj; j++) { orig[j - 1] = orig[j]; } 2338b0b4c70SToby Isaac origSize--; 2348b0b4c70SToby Isaac numAdj--; 2359566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(aSec, p, &aOff)); 2368b0b4c70SToby Isaac for (s = 0; s < aDof; ++s) { 237527e7439SSatish Balay for (q = 0; q < numAdj || ((void)(orig[numAdj++] = anchors[aOff + s]), 0); ++q) { 2388b0b4c70SToby Isaac if (anchors[aOff + s] == orig[q]) break; 2398b0b4c70SToby Isaac } 24063a3b9bcSJacob Faibussowitsch PetscCheck(numAdj <= maxAdjSize, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid mesh exceeded adjacency allocation (%" PetscInt_FMT ")", maxAdjSize); 2418b0b4c70SToby Isaac } 2429371c9d4SSatish Balay } else { 2438b0b4c70SToby Isaac i++; 2448b0b4c70SToby Isaac } 2458b0b4c70SToby Isaac } 2468b0b4c70SToby Isaac *adjSize = numAdj; 2479566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(aIS, &anchors)); 2488b0b4c70SToby Isaac } 24970034214SMatthew G. Knepley PetscFunctionReturn(0); 25070034214SMatthew G. Knepley } 25170034214SMatthew G. Knepley 25270034214SMatthew G. Knepley /*@ 25370034214SMatthew G. Knepley DMPlexGetAdjacency - Return all points adjacent to the given point 25470034214SMatthew G. Knepley 25570034214SMatthew G. Knepley Input Parameters: 25670034214SMatthew G. Knepley + dm - The DM object 2576b867d5aSJose E. Roman - p - The point 25870034214SMatthew G. Knepley 2596b867d5aSJose E. Roman Input/Output Parameters: 2606b867d5aSJose E. Roman + adjSize - The maximum size of adj if it is non-NULL, or PETSC_DETERMINE; 2616b867d5aSJose E. Roman on output the number of adjacent points 2626b867d5aSJose E. Roman - adj - Either NULL so that the array is allocated, or an existing array with size adjSize; 2636b867d5aSJose E. Roman on output contains the adjacent points 26470034214SMatthew G. Knepley 26570034214SMatthew G. Knepley Level: advanced 26670034214SMatthew G. Knepley 26795452b02SPatrick Sanan Notes: 26895452b02SPatrick Sanan The user must PetscFree the adj array if it was not passed in. 26970034214SMatthew G. Knepley 270db781477SPatrick Sanan .seealso: `DMSetAdjacency()`, `DMPlexDistribute()`, `DMCreateMatrix()`, `DMPlexPreallocateOperator()` 27170034214SMatthew G. Knepley @*/ 2729371c9d4SSatish Balay PetscErrorCode DMPlexGetAdjacency(DM dm, PetscInt p, PetscInt *adjSize, PetscInt *adj[]) { 2731cf84007SMatthew G. Knepley PetscBool useCone, useClosure, useAnchors; 27470034214SMatthew G. Knepley 27570034214SMatthew G. Knepley PetscFunctionBeginHot; 27670034214SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 277dadcf809SJacob Faibussowitsch PetscValidIntPointer(adjSize, 3); 27870034214SMatthew G. Knepley PetscValidPointer(adj, 4); 2799566063dSJacob Faibussowitsch PetscCall(DMGetBasicAdjacency(dm, &useCone, &useClosure)); 2809566063dSJacob Faibussowitsch PetscCall(DMPlexGetAdjacencyUseAnchors(dm, &useAnchors)); 2819566063dSJacob Faibussowitsch PetscCall(DMPlexGetAdjacency_Internal(dm, p, useCone, useClosure, useAnchors, adjSize, adj)); 28270034214SMatthew G. Knepley PetscFunctionReturn(0); 28370034214SMatthew G. Knepley } 28408633170SToby Isaac 285b0a623aaSMatthew G. Knepley /*@ 286b0a623aaSMatthew G. Knepley DMPlexCreateTwoSidedProcessSF - Create an SF which just has process connectivity 287b0a623aaSMatthew G. Knepley 288d083f849SBarry Smith Collective on dm 289b0a623aaSMatthew G. Knepley 290b0a623aaSMatthew G. Knepley Input Parameters: 291b0a623aaSMatthew G. Knepley + dm - The DM 2926b867d5aSJose E. Roman . sfPoint - The PetscSF which encodes point connectivity 2936b867d5aSJose E. Roman . rootRankSection - 2946b867d5aSJose E. Roman . rootRanks - 2956b867d5aSJose E. Roman . leftRankSection - 2966b867d5aSJose E. Roman - leafRanks - 297b0a623aaSMatthew G. Knepley 298b0a623aaSMatthew G. Knepley Output Parameters: 299b0a623aaSMatthew G. Knepley + processRanks - A list of process neighbors, or NULL 300b0a623aaSMatthew G. Knepley - sfProcess - An SF encoding the two-sided process connectivity, or NULL 301b0a623aaSMatthew G. Knepley 302b0a623aaSMatthew G. Knepley Level: developer 303b0a623aaSMatthew G. Knepley 304db781477SPatrick Sanan .seealso: `PetscSFCreate()`, `DMPlexCreateProcessSF()` 305b0a623aaSMatthew G. Knepley @*/ 3069371c9d4SSatish Balay PetscErrorCode DMPlexCreateTwoSidedProcessSF(DM dm, PetscSF sfPoint, PetscSection rootRankSection, IS rootRanks, PetscSection leafRankSection, IS leafRanks, IS *processRanks, PetscSF *sfProcess) { 307b0a623aaSMatthew G. Knepley const PetscSFNode *remotePoints; 308b0a623aaSMatthew G. Knepley PetscInt *localPointsNew; 309b0a623aaSMatthew G. Knepley PetscSFNode *remotePointsNew; 310b0a623aaSMatthew G. Knepley const PetscInt *nranks; 311b0a623aaSMatthew G. Knepley PetscInt *ranksNew; 312b0a623aaSMatthew G. Knepley PetscBT neighbors; 313b0a623aaSMatthew G. Knepley PetscInt pStart, pEnd, p, numLeaves, l, numNeighbors, n; 3149852e123SBarry Smith PetscMPIInt size, proc, rank; 315b0a623aaSMatthew G. Knepley 316b0a623aaSMatthew G. Knepley PetscFunctionBegin; 317b0a623aaSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 318b0a623aaSMatthew G. Knepley PetscValidHeaderSpecific(sfPoint, PETSCSF_CLASSID, 2); 319064a246eSJacob Faibussowitsch if (processRanks) { PetscValidPointer(processRanks, 7); } 320064a246eSJacob Faibussowitsch if (sfProcess) { PetscValidPointer(sfProcess, 8); } 3219566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)dm), &size)); 3229566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)dm), &rank)); 3239566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(sfPoint, NULL, &numLeaves, NULL, &remotePoints)); 3249566063dSJacob Faibussowitsch PetscCall(PetscBTCreate(size, &neighbors)); 3259566063dSJacob Faibussowitsch PetscCall(PetscBTMemzero(size, neighbors)); 326b0a623aaSMatthew G. Knepley /* Compute root-to-leaf process connectivity */ 3279566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(rootRankSection, &pStart, &pEnd)); 3289566063dSJacob Faibussowitsch PetscCall(ISGetIndices(rootRanks, &nranks)); 329b0a623aaSMatthew G. Knepley for (p = pStart; p < pEnd; ++p) { 330b0a623aaSMatthew G. Knepley PetscInt ndof, noff, n; 331b0a623aaSMatthew G. Knepley 3329566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(rootRankSection, p, &ndof)); 3339566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(rootRankSection, p, &noff)); 3349566063dSJacob Faibussowitsch for (n = 0; n < ndof; ++n) PetscCall(PetscBTSet(neighbors, nranks[noff + n])); 335b0a623aaSMatthew G. Knepley } 3369566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(rootRanks, &nranks)); 337b0a623aaSMatthew G. Knepley /* Compute leaf-to-neighbor process connectivity */ 3389566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(leafRankSection, &pStart, &pEnd)); 3399566063dSJacob Faibussowitsch PetscCall(ISGetIndices(leafRanks, &nranks)); 340b0a623aaSMatthew G. Knepley for (p = pStart; p < pEnd; ++p) { 341b0a623aaSMatthew G. Knepley PetscInt ndof, noff, n; 342b0a623aaSMatthew G. Knepley 3439566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(leafRankSection, p, &ndof)); 3449566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(leafRankSection, p, &noff)); 3459566063dSJacob Faibussowitsch for (n = 0; n < ndof; ++n) PetscCall(PetscBTSet(neighbors, nranks[noff + n])); 346b0a623aaSMatthew G. Knepley } 3479566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(leafRanks, &nranks)); 348b0a623aaSMatthew G. Knepley /* Compute leaf-to-root process connectivity */ 349b0a623aaSMatthew G. Knepley for (l = 0; l < numLeaves; ++l) { PetscBTSet(neighbors, remotePoints[l].rank); } 350b0a623aaSMatthew G. Knepley /* Calculate edges */ 351b0a623aaSMatthew G. Knepley PetscBTClear(neighbors, rank); 3529371c9d4SSatish Balay for (proc = 0, numNeighbors = 0; proc < size; ++proc) { 3539371c9d4SSatish Balay if (PetscBTLookup(neighbors, proc)) ++numNeighbors; 3549371c9d4SSatish Balay } 3559566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(numNeighbors, &ranksNew)); 3569566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(numNeighbors, &localPointsNew)); 3579566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(numNeighbors, &remotePointsNew)); 3589852e123SBarry Smith for (proc = 0, n = 0; proc < size; ++proc) { 359b0a623aaSMatthew G. Knepley if (PetscBTLookup(neighbors, proc)) { 360b0a623aaSMatthew G. Knepley ranksNew[n] = proc; 361b0a623aaSMatthew G. Knepley localPointsNew[n] = proc; 362b0a623aaSMatthew G. Knepley remotePointsNew[n].index = rank; 363b0a623aaSMatthew G. Knepley remotePointsNew[n].rank = proc; 364b0a623aaSMatthew G. Knepley ++n; 365b0a623aaSMatthew G. Knepley } 366b0a623aaSMatthew G. Knepley } 3679566063dSJacob Faibussowitsch PetscCall(PetscBTDestroy(&neighbors)); 3689566063dSJacob Faibussowitsch if (processRanks) PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)dm), numNeighbors, ranksNew, PETSC_OWN_POINTER, processRanks)); 3699566063dSJacob Faibussowitsch else PetscCall(PetscFree(ranksNew)); 370b0a623aaSMatthew G. Knepley if (sfProcess) { 3719566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)dm), sfProcess)); 3729566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)*sfProcess, "Two-Sided Process SF")); 3739566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions(*sfProcess)); 3749566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(*sfProcess, size, numNeighbors, localPointsNew, PETSC_OWN_POINTER, remotePointsNew, PETSC_OWN_POINTER)); 375b0a623aaSMatthew G. Knepley } 376b0a623aaSMatthew G. Knepley PetscFunctionReturn(0); 377b0a623aaSMatthew G. Knepley } 378b0a623aaSMatthew G. Knepley 379b0a623aaSMatthew G. Knepley /*@ 380b0a623aaSMatthew G. Knepley DMPlexDistributeOwnership - Compute owner information for shared points. This basically gets two-sided for an SF. 381b0a623aaSMatthew G. Knepley 382d083f849SBarry Smith Collective on dm 383b0a623aaSMatthew G. Knepley 384b0a623aaSMatthew G. Knepley Input Parameter: 385b0a623aaSMatthew G. Knepley . dm - The DM 386b0a623aaSMatthew G. Knepley 387b0a623aaSMatthew G. Knepley Output Parameters: 388b0a623aaSMatthew G. Knepley + rootSection - The number of leaves for a given root point 389b0a623aaSMatthew G. Knepley . rootrank - The rank of each edge into the root point 390b0a623aaSMatthew G. Knepley . leafSection - The number of processes sharing a given leaf point 391b0a623aaSMatthew G. Knepley - leafrank - The rank of each process sharing a leaf point 392b0a623aaSMatthew G. Knepley 393b0a623aaSMatthew G. Knepley Level: developer 394b0a623aaSMatthew G. Knepley 395db781477SPatrick Sanan .seealso: `DMPlexCreateOverlapLabel()`, `DMPlexDistribute()`, `DMPlexDistributeOverlap()` 396b0a623aaSMatthew G. Knepley @*/ 3979371c9d4SSatish Balay PetscErrorCode DMPlexDistributeOwnership(DM dm, PetscSection rootSection, IS *rootrank, PetscSection leafSection, IS *leafrank) { 398b0a623aaSMatthew G. Knepley MPI_Comm comm; 399b0a623aaSMatthew G. Knepley PetscSF sfPoint; 400b0a623aaSMatthew G. Knepley const PetscInt *rootdegree; 401b0a623aaSMatthew G. Knepley PetscInt *myrank, *remoterank; 402b0a623aaSMatthew G. Knepley PetscInt pStart, pEnd, p, nedges; 403b0a623aaSMatthew G. Knepley PetscMPIInt rank; 404b0a623aaSMatthew G. Knepley 405b0a623aaSMatthew G. Knepley PetscFunctionBegin; 4069566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)dm, &comm)); 4079566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 4089566063dSJacob Faibussowitsch PetscCall(DMPlexGetChart(dm, &pStart, &pEnd)); 4099566063dSJacob Faibussowitsch PetscCall(DMGetPointSF(dm, &sfPoint)); 410b0a623aaSMatthew G. Knepley /* Compute number of leaves for each root */ 4119566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)rootSection, "Root Section")); 4129566063dSJacob Faibussowitsch PetscCall(PetscSectionSetChart(rootSection, pStart, pEnd)); 4139566063dSJacob Faibussowitsch PetscCall(PetscSFComputeDegreeBegin(sfPoint, &rootdegree)); 4149566063dSJacob Faibussowitsch PetscCall(PetscSFComputeDegreeEnd(sfPoint, &rootdegree)); 4159566063dSJacob Faibussowitsch for (p = pStart; p < pEnd; ++p) PetscCall(PetscSectionSetDof(rootSection, p, rootdegree[p - pStart])); 4169566063dSJacob Faibussowitsch PetscCall(PetscSectionSetUp(rootSection)); 417b0a623aaSMatthew G. Knepley /* Gather rank of each leaf to root */ 4189566063dSJacob Faibussowitsch PetscCall(PetscSectionGetStorageSize(rootSection, &nedges)); 4199566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(pEnd - pStart, &myrank)); 4209566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nedges, &remoterank)); 421b0a623aaSMatthew G. Knepley for (p = 0; p < pEnd - pStart; ++p) myrank[p] = rank; 4229566063dSJacob Faibussowitsch PetscCall(PetscSFGatherBegin(sfPoint, MPIU_INT, myrank, remoterank)); 4239566063dSJacob Faibussowitsch PetscCall(PetscSFGatherEnd(sfPoint, MPIU_INT, myrank, remoterank)); 4249566063dSJacob Faibussowitsch PetscCall(PetscFree(myrank)); 4259566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(comm, nedges, remoterank, PETSC_OWN_POINTER, rootrank)); 426b0a623aaSMatthew G. Knepley /* Distribute remote ranks to leaves */ 4279566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)leafSection, "Leaf Section")); 4289566063dSJacob Faibussowitsch PetscCall(DMPlexDistributeFieldIS(dm, sfPoint, rootSection, *rootrank, leafSection, leafrank)); 429b0a623aaSMatthew G. Knepley PetscFunctionReturn(0); 430b0a623aaSMatthew G. Knepley } 431b0a623aaSMatthew G. Knepley 432c506a872SMatthew G. Knepley #if 0 433c506a872SMatthew G. Knepley static PetscErrorCode DMPlexCopyOverlapLabels(DM dm, DM ndm) 434c506a872SMatthew G. Knepley { 435c506a872SMatthew G. Knepley DM_Plex *mesh = (DM_Plex *) dm->data; 436c506a872SMatthew G. Knepley DM_Plex *nmesh = (DM_Plex *) ndm->data; 437c506a872SMatthew G. Knepley 438c506a872SMatthew G. Knepley PetscFunctionBegin; 439c506a872SMatthew G. Knepley if (mesh->numOvLabels) { 440c506a872SMatthew G. Knepley const char *name; 441c506a872SMatthew G. Knepley PetscInt l; 442c506a872SMatthew G. Knepley 443c506a872SMatthew G. Knepley nmesh->numOvLabels = mesh->numOvLabels; 444c506a872SMatthew G. Knepley for (l = 0; l < mesh->numOvLabels; ++l) { 445c506a872SMatthew G. Knepley PetscCall(PetscObjectGetName((PetscObject) mesh->ovLabels[l], &name)); 446c506a872SMatthew G. Knepley PetscCall(DMGetLabel(ndm, name, &nmesh->ovLabels[l])); 447c506a872SMatthew G. Knepley nmesh->ovValues[l] = mesh->ovValues[l]; 448c506a872SMatthew G. Knepley } 449c506a872SMatthew G. Knepley PetscCall(PetscObjectGetName((PetscObject) mesh->ovExLabel, &name)); 450c506a872SMatthew G. Knepley PetscCall(DMGetLabel(ndm, name, &nmesh->ovExLabel)); 451c506a872SMatthew G. Knepley nmesh->ovExValue = mesh->ovExValue; 452c506a872SMatthew G. Knepley } 453c506a872SMatthew G. Knepley PetscFunctionReturn(0); 454c506a872SMatthew G. Knepley } 455c506a872SMatthew G. Knepley #endif 456c506a872SMatthew G. Knepley 457278397a0SMatthew G. Knepley /*@C 458c506a872SMatthew G. Knepley DMPlexCreateOverlapLabel - Compute a label indicating what overlap points should be sent to new processes 459b0a623aaSMatthew G. Knepley 460d083f849SBarry Smith Collective on dm 461b0a623aaSMatthew G. Knepley 462b0a623aaSMatthew G. Knepley Input Parameters: 463b0a623aaSMatthew G. Knepley + dm - The DM 46424d039d7SMichael Lange . levels - Number of overlap levels 465b0a623aaSMatthew G. Knepley . rootSection - The number of leaves for a given root point 466b0a623aaSMatthew G. Knepley . rootrank - The rank of each edge into the root point 467b0a623aaSMatthew G. Knepley . leafSection - The number of processes sharing a given leaf point 468b0a623aaSMatthew G. Knepley - leafrank - The rank of each process sharing a leaf point 469b0a623aaSMatthew G. Knepley 470064ec1f3Sprj- Output Parameter: 471b4ec6ac8SBarry Smith . ovLabel - DMLabel containing remote overlap contributions as point/rank pairings 472b0a623aaSMatthew G. Knepley 473b0a623aaSMatthew G. Knepley Level: developer 474b0a623aaSMatthew G. Knepley 475c506a872SMatthew G. Knepley .seealso: `DMPlexCreateOverlapLabelFromLabels()`, `DMPlexGetAdjacency()`, `DMPlexDistributeOwnership()`, `DMPlexDistribute()` 476b0a623aaSMatthew G. Knepley @*/ 4779371c9d4SSatish Balay PetscErrorCode DMPlexCreateOverlapLabel(DM dm, PetscInt levels, PetscSection rootSection, IS rootrank, PetscSection leafSection, IS leafrank, DMLabel *ovLabel) { 478e540f424SMichael Lange MPI_Comm comm; 479b0a623aaSMatthew G. Knepley DMLabel ovAdjByRank; /* A DMLabel containing all points adjacent to shared points, separated by rank (value in label) */ 480874ddda9SLisandro Dalcin PetscSF sfPoint; 481b0a623aaSMatthew G. Knepley const PetscSFNode *remote; 482b0a623aaSMatthew G. Knepley const PetscInt *local; 4831fd9873aSMichael Lange const PetscInt *nrank, *rrank; 484b0a623aaSMatthew G. Knepley PetscInt *adj = NULL; 4851fd9873aSMichael Lange PetscInt pStart, pEnd, p, sStart, sEnd, nleaves, l; 4869852e123SBarry Smith PetscMPIInt rank, size; 48731bc6364SLisandro Dalcin PetscBool flg; 488b0a623aaSMatthew G. Knepley 489b0a623aaSMatthew G. Knepley PetscFunctionBegin; 4906ba1a4c7SVaclav Hapla *ovLabel = NULL; 4919566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)dm, &comm)); 4929566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 4939566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 4946ba1a4c7SVaclav Hapla if (size == 1) PetscFunctionReturn(0); 4959566063dSJacob Faibussowitsch PetscCall(DMGetPointSF(dm, &sfPoint)); 4969566063dSJacob Faibussowitsch PetscCall(DMPlexGetChart(dm, &pStart, &pEnd)); 497d1674c6dSMatthew Knepley if (!levels) { 498d1674c6dSMatthew Knepley /* Add owned points */ 4999566063dSJacob Faibussowitsch PetscCall(DMLabelCreate(PETSC_COMM_SELF, "Overlap label", ovLabel)); 5009566063dSJacob Faibussowitsch for (p = pStart; p < pEnd; ++p) PetscCall(DMLabelSetValue(*ovLabel, p, rank)); 501d1674c6dSMatthew Knepley PetscFunctionReturn(0); 502d1674c6dSMatthew Knepley } 5039566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(leafSection, &sStart, &sEnd)); 5049566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(sfPoint, NULL, &nleaves, &local, &remote)); 5059566063dSJacob Faibussowitsch PetscCall(DMLabelCreate(PETSC_COMM_SELF, "Overlap adjacency", &ovAdjByRank)); 506b0a623aaSMatthew G. Knepley /* Handle leaves: shared with the root point */ 507b0a623aaSMatthew G. Knepley for (l = 0; l < nleaves; ++l) { 508b0a623aaSMatthew G. Knepley PetscInt adjSize = PETSC_DETERMINE, a; 509b0a623aaSMatthew G. Knepley 5109566063dSJacob Faibussowitsch PetscCall(DMPlexGetAdjacency(dm, local ? local[l] : l, &adjSize, &adj)); 5119566063dSJacob Faibussowitsch for (a = 0; a < adjSize; ++a) PetscCall(DMLabelSetValue(ovAdjByRank, adj[a], remote[l].rank)); 512b0a623aaSMatthew G. Knepley } 5139566063dSJacob Faibussowitsch PetscCall(ISGetIndices(rootrank, &rrank)); 5149566063dSJacob Faibussowitsch PetscCall(ISGetIndices(leafrank, &nrank)); 515b0a623aaSMatthew G. Knepley /* Handle roots */ 516b0a623aaSMatthew G. Knepley for (p = pStart; p < pEnd; ++p) { 517b0a623aaSMatthew G. Knepley PetscInt adjSize = PETSC_DETERMINE, neighbors = 0, noff, n, a; 518b0a623aaSMatthew G. Knepley 519b0a623aaSMatthew G. Knepley if ((p >= sStart) && (p < sEnd)) { 520b0a623aaSMatthew G. Knepley /* Some leaves share a root with other leaves on different processes */ 5219566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(leafSection, p, &neighbors)); 522b0a623aaSMatthew G. Knepley if (neighbors) { 5239566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(leafSection, p, &noff)); 5249566063dSJacob Faibussowitsch PetscCall(DMPlexGetAdjacency(dm, p, &adjSize, &adj)); 525b0a623aaSMatthew G. Knepley for (n = 0; n < neighbors; ++n) { 526b0a623aaSMatthew G. Knepley const PetscInt remoteRank = nrank[noff + n]; 527b0a623aaSMatthew G. Knepley 528b0a623aaSMatthew G. Knepley if (remoteRank == rank) continue; 5299566063dSJacob Faibussowitsch for (a = 0; a < adjSize; ++a) PetscCall(DMLabelSetValue(ovAdjByRank, adj[a], remoteRank)); 530b0a623aaSMatthew G. Knepley } 531b0a623aaSMatthew G. Knepley } 532b0a623aaSMatthew G. Knepley } 533b0a623aaSMatthew G. Knepley /* Roots are shared with leaves */ 5349566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(rootSection, p, &neighbors)); 535b0a623aaSMatthew G. Knepley if (!neighbors) continue; 5369566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(rootSection, p, &noff)); 5379566063dSJacob Faibussowitsch PetscCall(DMPlexGetAdjacency(dm, p, &adjSize, &adj)); 538b0a623aaSMatthew G. Knepley for (n = 0; n < neighbors; ++n) { 539b0a623aaSMatthew G. Knepley const PetscInt remoteRank = rrank[noff + n]; 540b0a623aaSMatthew G. Knepley 541b0a623aaSMatthew G. Knepley if (remoteRank == rank) continue; 5429566063dSJacob Faibussowitsch for (a = 0; a < adjSize; ++a) PetscCall(DMLabelSetValue(ovAdjByRank, adj[a], remoteRank)); 543b0a623aaSMatthew G. Knepley } 544b0a623aaSMatthew G. Knepley } 5459566063dSJacob Faibussowitsch PetscCall(PetscFree(adj)); 5469566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(rootrank, &rrank)); 5479566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(leafrank, &nrank)); 54824d039d7SMichael Lange /* Add additional overlap levels */ 549be200f8dSMichael Lange for (l = 1; l < levels; l++) { 550be200f8dSMichael Lange /* Propagate point donations over SF to capture remote connections */ 5519566063dSJacob Faibussowitsch PetscCall(DMPlexPartitionLabelPropagate(dm, ovAdjByRank)); 552be200f8dSMichael Lange /* Add next level of point donations to the label */ 5539566063dSJacob Faibussowitsch PetscCall(DMPlexPartitionLabelAdjacency(dm, ovAdjByRank)); 554be200f8dSMichael Lange } 55526a7d390SMatthew G. Knepley /* We require the closure in the overlap */ 5569566063dSJacob Faibussowitsch PetscCall(DMPlexPartitionLabelClosure(dm, ovAdjByRank)); 5579566063dSJacob Faibussowitsch PetscCall(PetscOptionsHasName(((PetscObject)dm)->options, ((PetscObject)dm)->prefix, "-overlap_view", &flg)); 558e540f424SMichael Lange if (flg) { 559825f8a23SLisandro Dalcin PetscViewer viewer; 5609566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIGetStdout(PetscObjectComm((PetscObject)dm), &viewer)); 5619566063dSJacob Faibussowitsch PetscCall(DMLabelView(ovAdjByRank, viewer)); 562b0a623aaSMatthew G. Knepley } 563874ddda9SLisandro Dalcin /* Invert sender to receiver label */ 5649566063dSJacob Faibussowitsch PetscCall(DMLabelCreate(PETSC_COMM_SELF, "Overlap label", ovLabel)); 5659566063dSJacob Faibussowitsch PetscCall(DMPlexPartitionLabelInvert(dm, ovAdjByRank, NULL, *ovLabel)); 566a9f1d5b2SMichael Lange /* Add owned points, except for shared local points */ 5679566063dSJacob Faibussowitsch for (p = pStart; p < pEnd; ++p) PetscCall(DMLabelSetValue(*ovLabel, p, rank)); 568e540f424SMichael Lange for (l = 0; l < nleaves; ++l) { 5699566063dSJacob Faibussowitsch PetscCall(DMLabelClearValue(*ovLabel, local[l], rank)); 5709566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(*ovLabel, remote[l].index, remote[l].rank)); 571e540f424SMichael Lange } 572e540f424SMichael Lange /* Clean up */ 5739566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&ovAdjByRank)); 574b0a623aaSMatthew G. Knepley PetscFunctionReturn(0); 575b0a623aaSMatthew G. Knepley } 57670034214SMatthew G. Knepley 5779371c9d4SSatish Balay static PetscErrorCode HandlePoint_Private(DM dm, PetscInt p, PetscSection section, const PetscInt ranks[], PetscInt numExLabels, const DMLabel exLabel[], const PetscInt exValue[], DMLabel ovAdjByRank) { 578c506a872SMatthew G. Knepley PetscInt neighbors, el; 579c506a872SMatthew G. Knepley 580c506a872SMatthew G. Knepley PetscFunctionBegin; 581c506a872SMatthew G. Knepley PetscCall(PetscSectionGetDof(section, p, &neighbors)); 582c506a872SMatthew G. Knepley if (neighbors) { 583c506a872SMatthew G. Knepley PetscInt *adj = NULL; 584c506a872SMatthew G. Knepley PetscInt adjSize = PETSC_DETERMINE, noff, n, a; 585c506a872SMatthew G. Knepley PetscMPIInt rank; 586c506a872SMatthew G. Knepley 587c506a872SMatthew G. Knepley PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)dm), &rank)); 588c506a872SMatthew G. Knepley PetscCall(PetscSectionGetOffset(section, p, &noff)); 589c506a872SMatthew G. Knepley PetscCall(DMPlexGetAdjacency(dm, p, &adjSize, &adj)); 590c506a872SMatthew G. Knepley for (n = 0; n < neighbors; ++n) { 591c506a872SMatthew G. Knepley const PetscInt remoteRank = ranks[noff + n]; 592c506a872SMatthew G. Knepley 593c506a872SMatthew G. Knepley if (remoteRank == rank) continue; 594c506a872SMatthew G. Knepley for (a = 0; a < adjSize; ++a) { 595c506a872SMatthew G. Knepley PetscBool insert = PETSC_TRUE; 596c506a872SMatthew G. Knepley 597c506a872SMatthew G. Knepley for (el = 0; el < numExLabels; ++el) { 598c506a872SMatthew G. Knepley PetscInt exVal; 599c506a872SMatthew G. Knepley PetscCall(DMLabelGetValue(exLabel[el], adj[a], &exVal)); 6009371c9d4SSatish Balay if (exVal == exValue[el]) { 6019371c9d4SSatish Balay insert = PETSC_FALSE; 6029371c9d4SSatish Balay break; 6039371c9d4SSatish Balay } 604c506a872SMatthew G. Knepley } 605c506a872SMatthew G. Knepley if (insert) PetscCall(DMLabelSetValue(ovAdjByRank, adj[a], remoteRank)); 606c506a872SMatthew G. Knepley } 607c506a872SMatthew G. Knepley } 608c506a872SMatthew G. Knepley } 609c506a872SMatthew G. Knepley PetscFunctionReturn(0); 610c506a872SMatthew G. Knepley } 611c506a872SMatthew G. Knepley 612c506a872SMatthew G. Knepley /*@C 613c506a872SMatthew G. Knepley DMPlexCreateOverlapLabelFromLabels - Compute a label indicating what overlap points should be sent to new processes 614c506a872SMatthew G. Knepley 615c506a872SMatthew G. Knepley Collective on dm 616c506a872SMatthew G. Knepley 617c506a872SMatthew G. Knepley Input Parameters: 618c506a872SMatthew G. Knepley + dm - The DM 619c506a872SMatthew G. Knepley . numLabels - The number of labels to draw candidate points from 620c506a872SMatthew G. Knepley . label - An array of labels containing candidate points 621c506a872SMatthew G. Knepley . value - An array of label values marking the candidate points 622c506a872SMatthew G. Knepley . numExLabels - The number of labels to use for exclusion 623c506a872SMatthew G. Knepley . exLabel - An array of labels indicating points to be excluded, or NULL 624c506a872SMatthew G. Knepley . exValue - An array of label values to be excluded, or NULL 625c506a872SMatthew G. Knepley . rootSection - The number of leaves for a given root point 626c506a872SMatthew G. Knepley . rootrank - The rank of each edge into the root point 627c506a872SMatthew G. Knepley . leafSection - The number of processes sharing a given leaf point 628c506a872SMatthew G. Knepley - leafrank - The rank of each process sharing a leaf point 629c506a872SMatthew G. Knepley 630c506a872SMatthew G. Knepley Output Parameter: 631c506a872SMatthew G. Knepley . ovLabel - DMLabel containing remote overlap contributions as point/rank pairings 632c506a872SMatthew G. Knepley 633c506a872SMatthew G. Knepley Note: 634c506a872SMatthew G. Knepley The candidate points are only added to the overlap if they are adjacent to a shared point 635c506a872SMatthew G. Knepley 636c506a872SMatthew G. Knepley Level: developer 637c506a872SMatthew G. Knepley 638c506a872SMatthew G. Knepley .seealso: `DMPlexCreateOverlapLabel()`, `DMPlexGetAdjacency()`, `DMPlexDistributeOwnership()`, `DMPlexDistribute()` 639c506a872SMatthew G. Knepley @*/ 6409371c9d4SSatish Balay PetscErrorCode DMPlexCreateOverlapLabelFromLabels(DM dm, PetscInt numLabels, const DMLabel label[], const PetscInt value[], PetscInt numExLabels, const DMLabel exLabel[], const PetscInt exValue[], PetscSection rootSection, IS rootrank, PetscSection leafSection, IS leafrank, DMLabel *ovLabel) { 641c506a872SMatthew G. Knepley MPI_Comm comm; 642c506a872SMatthew G. Knepley DMLabel ovAdjByRank; /* A DMLabel containing all points adjacent to shared points, separated by rank (value in label) */ 643c506a872SMatthew G. Knepley PetscSF sfPoint; 644c506a872SMatthew G. Knepley const PetscSFNode *remote; 645c506a872SMatthew G. Knepley const PetscInt *local; 646c506a872SMatthew G. Knepley const PetscInt *nrank, *rrank; 647c506a872SMatthew G. Knepley PetscInt *adj = NULL; 648c506a872SMatthew G. Knepley PetscInt pStart, pEnd, p, sStart, sEnd, nleaves, l, el; 649c506a872SMatthew G. Knepley PetscMPIInt rank, size; 650c506a872SMatthew G. Knepley PetscBool flg; 651c506a872SMatthew G. Knepley 652c506a872SMatthew G. Knepley PetscFunctionBegin; 653c506a872SMatthew G. Knepley *ovLabel = NULL; 654c506a872SMatthew G. Knepley PetscCall(PetscObjectGetComm((PetscObject)dm, &comm)); 655c506a872SMatthew G. Knepley PetscCallMPI(MPI_Comm_size(comm, &size)); 656c506a872SMatthew G. Knepley PetscCallMPI(MPI_Comm_rank(comm, &rank)); 657c506a872SMatthew G. Knepley if (size == 1) PetscFunctionReturn(0); 658c506a872SMatthew G. Knepley PetscCall(DMGetPointSF(dm, &sfPoint)); 659c506a872SMatthew G. Knepley PetscCall(DMPlexGetChart(dm, &pStart, &pEnd)); 660c506a872SMatthew G. Knepley PetscCall(PetscSectionGetChart(leafSection, &sStart, &sEnd)); 661c506a872SMatthew G. Knepley PetscCall(PetscSFGetGraph(sfPoint, NULL, &nleaves, &local, &remote)); 662c506a872SMatthew G. Knepley PetscCall(DMLabelCreate(PETSC_COMM_SELF, "Overlap adjacency", &ovAdjByRank)); 663c506a872SMatthew G. Knepley PetscCall(ISGetIndices(rootrank, &rrank)); 664c506a872SMatthew G. Knepley PetscCall(ISGetIndices(leafrank, &nrank)); 665c506a872SMatthew G. Knepley for (l = 0; l < numLabels; ++l) { 666c506a872SMatthew G. Knepley IS valIS; 667c506a872SMatthew G. Knepley const PetscInt *points; 668c506a872SMatthew G. Knepley PetscInt n; 669c506a872SMatthew G. Knepley 670c506a872SMatthew G. Knepley PetscCall(DMLabelGetStratumIS(label[l], value[l], &valIS)); 671c506a872SMatthew G. Knepley if (!valIS) continue; 672c506a872SMatthew G. Knepley PetscCall(ISGetIndices(valIS, &points)); 673c506a872SMatthew G. Knepley PetscCall(ISGetLocalSize(valIS, &n)); 674c506a872SMatthew G. Knepley for (PetscInt i = 0; i < n; ++i) { 675c506a872SMatthew G. Knepley const PetscInt p = points[i]; 676c506a872SMatthew G. Knepley 677c506a872SMatthew G. Knepley if ((p >= sStart) && (p < sEnd)) { 678c506a872SMatthew G. Knepley PetscInt loc, adjSize = PETSC_DETERMINE; 679c506a872SMatthew G. Knepley 680c506a872SMatthew G. Knepley /* Handle leaves: shared with the root point */ 681c506a872SMatthew G. Knepley if (local) PetscCall(PetscFindInt(p, nleaves, local, &loc)); 682c506a872SMatthew G. Knepley else loc = (p >= 0 && p < nleaves) ? p : -1; 683c506a872SMatthew G. Knepley if (loc >= 0) { 684c506a872SMatthew G. Knepley const PetscInt remoteRank = remote[loc].rank; 685c506a872SMatthew G. Knepley 686c506a872SMatthew G. Knepley PetscCall(DMPlexGetAdjacency(dm, p, &adjSize, &adj)); 687c506a872SMatthew G. Knepley for (PetscInt a = 0; a < adjSize; ++a) { 688c506a872SMatthew G. Knepley PetscBool insert = PETSC_TRUE; 689c506a872SMatthew G. Knepley 690c506a872SMatthew G. Knepley for (el = 0; el < numExLabels; ++el) { 691c506a872SMatthew G. Knepley PetscInt exVal; 692c506a872SMatthew G. Knepley PetscCall(DMLabelGetValue(exLabel[el], adj[a], &exVal)); 6939371c9d4SSatish Balay if (exVal == exValue[el]) { 6949371c9d4SSatish Balay insert = PETSC_FALSE; 6959371c9d4SSatish Balay break; 6969371c9d4SSatish Balay } 697c506a872SMatthew G. Knepley } 698c506a872SMatthew G. Knepley if (insert) PetscCall(DMLabelSetValue(ovAdjByRank, adj[a], remoteRank)); 699c506a872SMatthew G. Knepley } 700c506a872SMatthew G. Knepley } 701c506a872SMatthew G. Knepley /* Some leaves share a root with other leaves on different processes */ 702c506a872SMatthew G. Knepley HandlePoint_Private(dm, p, leafSection, nrank, numExLabels, exLabel, exValue, ovAdjByRank); 703c506a872SMatthew G. Knepley } 704c506a872SMatthew G. Knepley /* Roots are shared with leaves */ 705c506a872SMatthew G. Knepley HandlePoint_Private(dm, p, rootSection, rrank, numExLabels, exLabel, exValue, ovAdjByRank); 706c506a872SMatthew G. Knepley } 707c506a872SMatthew G. Knepley PetscCall(ISRestoreIndices(valIS, &points)); 708c506a872SMatthew G. Knepley PetscCall(ISDestroy(&valIS)); 709c506a872SMatthew G. Knepley } 710c506a872SMatthew G. Knepley PetscCall(PetscFree(adj)); 711c506a872SMatthew G. Knepley PetscCall(ISRestoreIndices(rootrank, &rrank)); 712c506a872SMatthew G. Knepley PetscCall(ISRestoreIndices(leafrank, &nrank)); 713c506a872SMatthew G. Knepley /* We require the closure in the overlap */ 714c506a872SMatthew G. Knepley PetscCall(DMPlexPartitionLabelClosure(dm, ovAdjByRank)); 715c506a872SMatthew G. Knepley PetscCall(PetscOptionsHasName(((PetscObject)dm)->options, ((PetscObject)dm)->prefix, "-overlap_view", &flg)); 716c506a872SMatthew G. Knepley if (flg) { 717c506a872SMatthew G. Knepley PetscViewer viewer; 718c506a872SMatthew G. Knepley PetscCall(PetscViewerASCIIGetStdout(PetscObjectComm((PetscObject)dm), &viewer)); 719c506a872SMatthew G. Knepley PetscCall(DMLabelView(ovAdjByRank, viewer)); 720c506a872SMatthew G. Knepley } 721c506a872SMatthew G. Knepley /* Invert sender to receiver label */ 722c506a872SMatthew G. Knepley PetscCall(DMLabelCreate(PETSC_COMM_SELF, "Overlap label", ovLabel)); 723c506a872SMatthew G. Knepley PetscCall(DMPlexPartitionLabelInvert(dm, ovAdjByRank, NULL, *ovLabel)); 724c506a872SMatthew G. Knepley /* Add owned points, except for shared local points */ 725c506a872SMatthew G. Knepley for (p = pStart; p < pEnd; ++p) PetscCall(DMLabelSetValue(*ovLabel, p, rank)); 726c506a872SMatthew G. Knepley for (l = 0; l < nleaves; ++l) { 727c506a872SMatthew G. Knepley PetscCall(DMLabelClearValue(*ovLabel, local[l], rank)); 728c506a872SMatthew G. Knepley PetscCall(DMLabelSetValue(*ovLabel, remote[l].index, remote[l].rank)); 729c506a872SMatthew G. Knepley } 730c506a872SMatthew G. Knepley /* Clean up */ 731c506a872SMatthew G. Knepley PetscCall(DMLabelDestroy(&ovAdjByRank)); 732c506a872SMatthew G. Knepley PetscFunctionReturn(0); 733c506a872SMatthew G. Knepley } 734c506a872SMatthew G. Knepley 73524cc2ca5SMatthew G. Knepley /*@C 73624cc2ca5SMatthew G. Knepley DMPlexCreateOverlapMigrationSF - Create an SF describing the new mesh distribution to make the overlap described by the input SF 73724cc2ca5SMatthew G. Knepley 738d083f849SBarry Smith Collective on dm 73924cc2ca5SMatthew G. Knepley 74024cc2ca5SMatthew G. Knepley Input Parameters: 74124cc2ca5SMatthew G. Knepley + dm - The DM 74224cc2ca5SMatthew G. Knepley - overlapSF - The SF mapping ghost points in overlap to owner points on other processes 74324cc2ca5SMatthew G. Knepley 744064ec1f3Sprj- Output Parameter: 745a2b725a8SWilliam Gropp . migrationSF - An SF that maps original points in old locations to points in new locations 74624cc2ca5SMatthew G. Knepley 74724cc2ca5SMatthew G. Knepley Level: developer 74824cc2ca5SMatthew G. Knepley 749db781477SPatrick Sanan .seealso: `DMPlexCreateOverlapLabel()`, `DMPlexDistributeOverlap()`, `DMPlexDistribute()` 75024cc2ca5SMatthew G. Knepley @*/ 7519371c9d4SSatish Balay PetscErrorCode DMPlexCreateOverlapMigrationSF(DM dm, PetscSF overlapSF, PetscSF *migrationSF) { 75246f9b1c3SMichael Lange MPI_Comm comm; 7539852e123SBarry Smith PetscMPIInt rank, size; 75446f9b1c3SMichael Lange PetscInt d, dim, p, pStart, pEnd, nroots, nleaves, newLeaves, point, numSharedPoints; 75546f9b1c3SMichael Lange PetscInt *pointDepths, *remoteDepths, *ilocal; 75646f9b1c3SMichael Lange PetscInt *depthRecv, *depthShift, *depthIdx; 75746f9b1c3SMichael Lange PetscSFNode *iremote; 75846f9b1c3SMichael Lange PetscSF pointSF; 75946f9b1c3SMichael Lange const PetscInt *sharedLocal; 76046f9b1c3SMichael Lange const PetscSFNode *overlapRemote, *sharedRemote; 76146f9b1c3SMichael Lange 76246f9b1c3SMichael Lange PetscFunctionBegin; 76346f9b1c3SMichael Lange PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 7649566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)dm, &comm)); 7659566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 7669566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 7679566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 76846f9b1c3SMichael Lange 76946f9b1c3SMichael Lange /* Before building the migration SF we need to know the new stratum offsets */ 7709566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(overlapSF, &nroots, &nleaves, NULL, &overlapRemote)); 7719566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(nroots, &pointDepths, nleaves, &remoteDepths)); 77246f9b1c3SMichael Lange for (d = 0; d < dim + 1; d++) { 7739566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthStratum(dm, d, &pStart, &pEnd)); 77446f9b1c3SMichael Lange for (p = pStart; p < pEnd; p++) pointDepths[p] = d; 77546f9b1c3SMichael Lange } 77646f9b1c3SMichael Lange for (p = 0; p < nleaves; p++) remoteDepths[p] = -1; 7779566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(overlapSF, MPIU_INT, pointDepths, remoteDepths, MPI_REPLACE)); 7789566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(overlapSF, MPIU_INT, pointDepths, remoteDepths, MPI_REPLACE)); 77946f9b1c3SMichael Lange 7802d4ee042Sprj- /* Count received points in each stratum and compute the internal strata shift */ 7819566063dSJacob Faibussowitsch PetscCall(PetscMalloc3(dim + 1, &depthRecv, dim + 1, &depthShift, dim + 1, &depthIdx)); 78246f9b1c3SMichael Lange for (d = 0; d < dim + 1; d++) depthRecv[d] = 0; 78346f9b1c3SMichael Lange for (p = 0; p < nleaves; p++) depthRecv[remoteDepths[p]]++; 78446f9b1c3SMichael Lange depthShift[dim] = 0; 78546f9b1c3SMichael Lange for (d = 0; d < dim; d++) depthShift[d] = depthRecv[dim]; 78646f9b1c3SMichael Lange for (d = 1; d < dim; d++) depthShift[d] += depthRecv[0]; 78746f9b1c3SMichael Lange for (d = dim - 2; d > 0; d--) depthShift[d] += depthRecv[d + 1]; 78846f9b1c3SMichael Lange for (d = 0; d < dim + 1; d++) { 7899566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthStratum(dm, d, &pStart, &pEnd)); 79046f9b1c3SMichael Lange depthIdx[d] = pStart + depthShift[d]; 79146f9b1c3SMichael Lange } 79246f9b1c3SMichael Lange 79346f9b1c3SMichael Lange /* Form the overlap SF build an SF that describes the full overlap migration SF */ 7949566063dSJacob Faibussowitsch PetscCall(DMPlexGetChart(dm, &pStart, &pEnd)); 79546f9b1c3SMichael Lange newLeaves = pEnd - pStart + nleaves; 7969566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(newLeaves, &ilocal)); 7979566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(newLeaves, &iremote)); 79846f9b1c3SMichael Lange /* First map local points to themselves */ 79946f9b1c3SMichael Lange for (d = 0; d < dim + 1; d++) { 8009566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthStratum(dm, d, &pStart, &pEnd)); 80146f9b1c3SMichael Lange for (p = pStart; p < pEnd; p++) { 80246f9b1c3SMichael Lange point = p + depthShift[d]; 80346f9b1c3SMichael Lange ilocal[point] = point; 80446f9b1c3SMichael Lange iremote[point].index = p; 80546f9b1c3SMichael Lange iremote[point].rank = rank; 80646f9b1c3SMichael Lange depthIdx[d]++; 80746f9b1c3SMichael Lange } 80846f9b1c3SMichael Lange } 80946f9b1c3SMichael Lange 81046f9b1c3SMichael Lange /* Add in the remote roots for currently shared points */ 8119566063dSJacob Faibussowitsch PetscCall(DMGetPointSF(dm, &pointSF)); 8129566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(pointSF, NULL, &numSharedPoints, &sharedLocal, &sharedRemote)); 81346f9b1c3SMichael Lange for (d = 0; d < dim + 1; d++) { 8149566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthStratum(dm, d, &pStart, &pEnd)); 81546f9b1c3SMichael Lange for (p = 0; p < numSharedPoints; p++) { 81646f9b1c3SMichael Lange if (pStart <= sharedLocal[p] && sharedLocal[p] < pEnd) { 81746f9b1c3SMichael Lange point = sharedLocal[p] + depthShift[d]; 81846f9b1c3SMichael Lange iremote[point].index = sharedRemote[p].index; 81946f9b1c3SMichael Lange iremote[point].rank = sharedRemote[p].rank; 82046f9b1c3SMichael Lange } 82146f9b1c3SMichael Lange } 82246f9b1c3SMichael Lange } 82346f9b1c3SMichael Lange 82446f9b1c3SMichael Lange /* Now add the incoming overlap points */ 82546f9b1c3SMichael Lange for (p = 0; p < nleaves; p++) { 82646f9b1c3SMichael Lange point = depthIdx[remoteDepths[p]]; 82746f9b1c3SMichael Lange ilocal[point] = point; 82846f9b1c3SMichael Lange iremote[point].index = overlapRemote[p].index; 82946f9b1c3SMichael Lange iremote[point].rank = overlapRemote[p].rank; 83046f9b1c3SMichael Lange depthIdx[remoteDepths[p]]++; 83146f9b1c3SMichael Lange } 8329566063dSJacob Faibussowitsch PetscCall(PetscFree2(pointDepths, remoteDepths)); 83346f9b1c3SMichael Lange 8349566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(comm, migrationSF)); 8359566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)*migrationSF, "Overlap Migration SF")); 8369566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions(*migrationSF)); 8379566063dSJacob Faibussowitsch PetscCall(DMPlexGetChart(dm, &pStart, &pEnd)); 8389566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(*migrationSF, pEnd - pStart, newLeaves, ilocal, PETSC_OWN_POINTER, iremote, PETSC_OWN_POINTER)); 83946f9b1c3SMichael Lange 8409566063dSJacob Faibussowitsch PetscCall(PetscFree3(depthRecv, depthShift, depthIdx)); 84170034214SMatthew G. Knepley PetscFunctionReturn(0); 84270034214SMatthew G. Knepley } 84370034214SMatthew G. Knepley 844a9f1d5b2SMichael Lange /*@ 845f0e73a3dSToby Isaac DMPlexStratifyMigrationSF - Rearrange the leaves of a migration sf for stratification. 846a9f1d5b2SMichael Lange 847064ec1f3Sprj- Input Parameters: 848a9f1d5b2SMichael Lange + dm - The DM 849a9f1d5b2SMichael Lange - sf - A star forest with non-ordered leaves, usually defining a DM point migration 850a9f1d5b2SMichael Lange 851a9f1d5b2SMichael Lange Output Parameter: 852a9f1d5b2SMichael Lange . migrationSF - A star forest with added leaf indirection that ensures the resulting DM is stratified 853a9f1d5b2SMichael Lange 854412e9a14SMatthew G. Knepley Note: 855412e9a14SMatthew G. Knepley This lexicographically sorts by (depth, cellType) 856412e9a14SMatthew G. Knepley 857a9f1d5b2SMichael Lange Level: developer 858a9f1d5b2SMichael Lange 859db781477SPatrick Sanan .seealso: `DMPlexPartitionLabelCreateSF()`, `DMPlexDistribute()`, `DMPlexDistributeOverlap()` 860a9f1d5b2SMichael Lange @*/ 8619371c9d4SSatish Balay PetscErrorCode DMPlexStratifyMigrationSF(DM dm, PetscSF sf, PetscSF *migrationSF) { 862a9f1d5b2SMichael Lange MPI_Comm comm; 8639852e123SBarry Smith PetscMPIInt rank, size; 864412e9a14SMatthew G. Knepley PetscInt d, ldepth, depth, dim, p, pStart, pEnd, nroots, nleaves; 865412e9a14SMatthew G. Knepley PetscSFNode *pointDepths, *remoteDepths; 866412e9a14SMatthew G. Knepley PetscInt *ilocal; 867a9f1d5b2SMichael Lange PetscInt *depthRecv, *depthShift, *depthIdx; 868412e9a14SMatthew G. Knepley PetscInt *ctRecv, *ctShift, *ctIdx; 869a9f1d5b2SMichael Lange const PetscSFNode *iremote; 870a9f1d5b2SMichael Lange 871a9f1d5b2SMichael Lange PetscFunctionBegin; 872a9f1d5b2SMichael Lange PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 8739566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)dm, &comm)); 8749566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 8759566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 8769566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepth(dm, &ldepth)); 8779566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 8781c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&ldepth, &depth, 1, MPIU_INT, MPI_MAX, comm)); 87963a3b9bcSJacob Faibussowitsch PetscCheck(!(ldepth >= 0) || !(depth != ldepth), PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Inconsistent Plex depth %" PetscInt_FMT " != %" PetscInt_FMT, ldepth, depth); 8809566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DMPLEX_PartStratSF, dm, 0, 0, 0)); 881a9f1d5b2SMichael Lange 882a9f1d5b2SMichael Lange /* Before building the migration SF we need to know the new stratum offsets */ 8839566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(sf, &nroots, &nleaves, NULL, &iremote)); 8849566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(nroots, &pointDepths, nleaves, &remoteDepths)); 8857fab53ddSMatthew G. Knepley for (d = 0; d < depth + 1; ++d) { 8869566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthStratum(dm, d, &pStart, &pEnd)); 887f0e73a3dSToby Isaac for (p = pStart; p < pEnd; ++p) { 888412e9a14SMatthew G. Knepley DMPolytopeType ct; 889f0e73a3dSToby Isaac 8909566063dSJacob Faibussowitsch PetscCall(DMPlexGetCellType(dm, p, &ct)); 891412e9a14SMatthew G. Knepley pointDepths[p].index = d; 892412e9a14SMatthew G. Knepley pointDepths[p].rank = ct; 893f0e73a3dSToby Isaac } 894412e9a14SMatthew G. Knepley } 8959371c9d4SSatish Balay for (p = 0; p < nleaves; ++p) { 8969371c9d4SSatish Balay remoteDepths[p].index = -1; 8979371c9d4SSatish Balay remoteDepths[p].rank = -1; 8989371c9d4SSatish Balay } 8999566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(sf, MPIU_2INT, pointDepths, remoteDepths, MPI_REPLACE)); 9009566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(sf, MPIU_2INT, pointDepths, remoteDepths, MPI_REPLACE)); 901412e9a14SMatthew G. Knepley /* Count received points in each stratum and compute the internal strata shift */ 9029566063dSJacob Faibussowitsch PetscCall(PetscCalloc6(depth + 1, &depthRecv, depth + 1, &depthShift, depth + 1, &depthIdx, DM_NUM_POLYTOPES, &ctRecv, DM_NUM_POLYTOPES, &ctShift, DM_NUM_POLYTOPES, &ctIdx)); 903412e9a14SMatthew G. Knepley for (p = 0; p < nleaves; ++p) { 904412e9a14SMatthew G. Knepley if (remoteDepths[p].rank < 0) { 905412e9a14SMatthew G. Knepley ++depthRecv[remoteDepths[p].index]; 906412e9a14SMatthew G. Knepley } else { 907412e9a14SMatthew G. Knepley ++ctRecv[remoteDepths[p].rank]; 908412e9a14SMatthew G. Knepley } 909412e9a14SMatthew G. Knepley } 910412e9a14SMatthew G. Knepley { 911412e9a14SMatthew G. Knepley PetscInt depths[4], dims[4], shift = 0, i, c; 912412e9a14SMatthew G. Knepley 9138238f61eSMatthew G. Knepley /* Cells (depth), Vertices (0), Faces (depth-1), Edges (1) 9148238f61eSMatthew G. Knepley Consider DM_POLYTOPE_FV_GHOST and DM_POLYTOPE_INTERIOR_GHOST as cells 9158238f61eSMatthew G. Knepley */ 9169371c9d4SSatish Balay depths[0] = depth; 9179371c9d4SSatish Balay depths[1] = 0; 9189371c9d4SSatish Balay depths[2] = depth - 1; 9199371c9d4SSatish Balay depths[3] = 1; 9209371c9d4SSatish Balay dims[0] = dim; 9219371c9d4SSatish Balay dims[1] = 0; 9229371c9d4SSatish Balay dims[2] = dim - 1; 9239371c9d4SSatish Balay dims[3] = 1; 924412e9a14SMatthew G. Knepley for (i = 0; i <= depth; ++i) { 925412e9a14SMatthew G. Knepley const PetscInt dep = depths[i]; 926412e9a14SMatthew G. Knepley const PetscInt dim = dims[i]; 927412e9a14SMatthew G. Knepley 928412e9a14SMatthew G. Knepley for (c = 0; c < DM_NUM_POLYTOPES; ++c) { 9298238f61eSMatthew G. Knepley if (DMPolytopeTypeGetDim((DMPolytopeType)c) != dim && !(i == 0 && (c == DM_POLYTOPE_FV_GHOST || c == DM_POLYTOPE_INTERIOR_GHOST))) continue; 930412e9a14SMatthew G. Knepley ctShift[c] = shift; 931412e9a14SMatthew G. Knepley shift += ctRecv[c]; 932412e9a14SMatthew G. Knepley } 933412e9a14SMatthew G. Knepley depthShift[dep] = shift; 934412e9a14SMatthew G. Knepley shift += depthRecv[dep]; 935412e9a14SMatthew G. Knepley } 936412e9a14SMatthew G. Knepley for (c = 0; c < DM_NUM_POLYTOPES; ++c) { 937412e9a14SMatthew G. Knepley const PetscInt ctDim = DMPolytopeTypeGetDim((DMPolytopeType)c); 938412e9a14SMatthew G. Knepley 9398238f61eSMatthew G. Knepley if ((ctDim < 0 || ctDim > dim) && (c != DM_POLYTOPE_FV_GHOST && c != DM_POLYTOPE_INTERIOR_GHOST)) { 940412e9a14SMatthew G. Knepley ctShift[c] = shift; 941412e9a14SMatthew G. Knepley shift += ctRecv[c]; 942412e9a14SMatthew G. Knepley } 943412e9a14SMatthew G. Knepley } 944412e9a14SMatthew G. Knepley } 945a9f1d5b2SMichael Lange /* Derive a new local permutation based on stratified indices */ 9469566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nleaves, &ilocal)); 9477fab53ddSMatthew G. Knepley for (p = 0; p < nleaves; ++p) { 948412e9a14SMatthew G. Knepley const PetscInt dep = remoteDepths[p].index; 949412e9a14SMatthew G. Knepley const DMPolytopeType ct = (DMPolytopeType)remoteDepths[p].rank; 9507fab53ddSMatthew G. Knepley 951412e9a14SMatthew G. Knepley if ((PetscInt)ct < 0) { 9527fab53ddSMatthew G. Knepley ilocal[p] = depthShift[dep] + depthIdx[dep]; 953412e9a14SMatthew G. Knepley ++depthIdx[dep]; 954412e9a14SMatthew G. Knepley } else { 955412e9a14SMatthew G. Knepley ilocal[p] = ctShift[ct] + ctIdx[ct]; 956412e9a14SMatthew G. Knepley ++ctIdx[ct]; 957412e9a14SMatthew G. Knepley } 958a9f1d5b2SMichael Lange } 9599566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(comm, migrationSF)); 9609566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)*migrationSF, "Migration SF")); 9619566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(*migrationSF, nroots, nleaves, ilocal, PETSC_OWN_POINTER, (PetscSFNode *)iremote, PETSC_COPY_VALUES)); 9629566063dSJacob Faibussowitsch PetscCall(PetscFree2(pointDepths, remoteDepths)); 9639566063dSJacob Faibussowitsch PetscCall(PetscFree6(depthRecv, depthShift, depthIdx, ctRecv, ctShift, ctIdx)); 9649566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DMPLEX_PartStratSF, dm, 0, 0, 0)); 965a9f1d5b2SMichael Lange PetscFunctionReturn(0); 966a9f1d5b2SMichael Lange } 967a9f1d5b2SMichael Lange 96870034214SMatthew G. Knepley /*@ 96970034214SMatthew G. Knepley DMPlexDistributeField - Distribute field data to match a given PetscSF, usually the SF from mesh distribution 97070034214SMatthew G. Knepley 971d083f849SBarry Smith Collective on dm 97270034214SMatthew G. Knepley 97370034214SMatthew G. Knepley Input Parameters: 97470034214SMatthew G. Knepley + dm - The DMPlex object 97570034214SMatthew G. Knepley . pointSF - The PetscSF describing the communication pattern 97670034214SMatthew G. Knepley . originalSection - The PetscSection for existing data layout 977cb15cd0eSMatthew G. Knepley - originalVec - The existing data in a local vector 97870034214SMatthew G. Knepley 97970034214SMatthew G. Knepley Output Parameters: 98070034214SMatthew G. Knepley + newSection - The PetscSF describing the new data layout 981cb15cd0eSMatthew G. Knepley - newVec - The new data in a local vector 98270034214SMatthew G. Knepley 98370034214SMatthew G. Knepley Level: developer 98470034214SMatthew G. Knepley 985db781477SPatrick Sanan .seealso: `DMPlexDistribute()`, `DMPlexDistributeFieldIS()`, `DMPlexDistributeData()` 98670034214SMatthew G. Knepley @*/ 9879371c9d4SSatish Balay PetscErrorCode DMPlexDistributeField(DM dm, PetscSF pointSF, PetscSection originalSection, Vec originalVec, PetscSection newSection, Vec newVec) { 98870034214SMatthew G. Knepley PetscSF fieldSF; 98970034214SMatthew G. Knepley PetscInt *remoteOffsets, fieldSize; 99070034214SMatthew G. Knepley PetscScalar *originalValues, *newValues; 99170034214SMatthew G. Knepley 99270034214SMatthew G. Knepley PetscFunctionBegin; 9939566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DMPLEX_DistributeField, dm, 0, 0, 0)); 9949566063dSJacob Faibussowitsch PetscCall(PetscSFDistributeSection(pointSF, originalSection, &remoteOffsets, newSection)); 99570034214SMatthew G. Knepley 9969566063dSJacob Faibussowitsch PetscCall(PetscSectionGetStorageSize(newSection, &fieldSize)); 9979566063dSJacob Faibussowitsch PetscCall(VecSetSizes(newVec, fieldSize, PETSC_DETERMINE)); 9989566063dSJacob Faibussowitsch PetscCall(VecSetType(newVec, dm->vectype)); 99970034214SMatthew G. Knepley 10009566063dSJacob Faibussowitsch PetscCall(VecGetArray(originalVec, &originalValues)); 10019566063dSJacob Faibussowitsch PetscCall(VecGetArray(newVec, &newValues)); 10029566063dSJacob Faibussowitsch PetscCall(PetscSFCreateSectionSF(pointSF, originalSection, remoteOffsets, newSection, &fieldSF)); 10039566063dSJacob Faibussowitsch PetscCall(PetscFree(remoteOffsets)); 10049566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(fieldSF, MPIU_SCALAR, originalValues, newValues, MPI_REPLACE)); 10059566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(fieldSF, MPIU_SCALAR, originalValues, newValues, MPI_REPLACE)); 10069566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&fieldSF)); 10079566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(newVec, &newValues)); 10089566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(originalVec, &originalValues)); 10099566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DMPLEX_DistributeField, dm, 0, 0, 0)); 101070034214SMatthew G. Knepley PetscFunctionReturn(0); 101170034214SMatthew G. Knepley } 101270034214SMatthew G. Knepley 101370034214SMatthew G. Knepley /*@ 101470034214SMatthew G. Knepley DMPlexDistributeFieldIS - Distribute field data to match a given PetscSF, usually the SF from mesh distribution 101570034214SMatthew G. Knepley 1016d083f849SBarry Smith Collective on dm 101770034214SMatthew G. Knepley 101870034214SMatthew G. Knepley Input Parameters: 101970034214SMatthew G. Knepley + dm - The DMPlex object 102070034214SMatthew G. Knepley . pointSF - The PetscSF describing the communication pattern 102170034214SMatthew G. Knepley . originalSection - The PetscSection for existing data layout 102270034214SMatthew G. Knepley - originalIS - The existing data 102370034214SMatthew G. Knepley 102470034214SMatthew G. Knepley Output Parameters: 102570034214SMatthew G. Knepley + newSection - The PetscSF describing the new data layout 102670034214SMatthew G. Knepley - newIS - The new data 102770034214SMatthew G. Knepley 102870034214SMatthew G. Knepley Level: developer 102970034214SMatthew G. Knepley 1030db781477SPatrick Sanan .seealso: `DMPlexDistribute()`, `DMPlexDistributeField()`, `DMPlexDistributeData()` 103170034214SMatthew G. Knepley @*/ 10329371c9d4SSatish Balay PetscErrorCode DMPlexDistributeFieldIS(DM dm, PetscSF pointSF, PetscSection originalSection, IS originalIS, PetscSection newSection, IS *newIS) { 103370034214SMatthew G. Knepley PetscSF fieldSF; 103470034214SMatthew G. Knepley PetscInt *newValues, *remoteOffsets, fieldSize; 103570034214SMatthew G. Knepley const PetscInt *originalValues; 103670034214SMatthew G. Knepley 103770034214SMatthew G. Knepley PetscFunctionBegin; 10389566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DMPLEX_DistributeField, dm, 0, 0, 0)); 10399566063dSJacob Faibussowitsch PetscCall(PetscSFDistributeSection(pointSF, originalSection, &remoteOffsets, newSection)); 104070034214SMatthew G. Knepley 10419566063dSJacob Faibussowitsch PetscCall(PetscSectionGetStorageSize(newSection, &fieldSize)); 10429566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(fieldSize, &newValues)); 104370034214SMatthew G. Knepley 10449566063dSJacob Faibussowitsch PetscCall(ISGetIndices(originalIS, &originalValues)); 10459566063dSJacob Faibussowitsch PetscCall(PetscSFCreateSectionSF(pointSF, originalSection, remoteOffsets, newSection, &fieldSF)); 10469566063dSJacob Faibussowitsch PetscCall(PetscFree(remoteOffsets)); 10479566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(fieldSF, MPIU_INT, (PetscInt *)originalValues, newValues, MPI_REPLACE)); 10489566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(fieldSF, MPIU_INT, (PetscInt *)originalValues, newValues, MPI_REPLACE)); 10499566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&fieldSF)); 10509566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(originalIS, &originalValues)); 10519566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)pointSF), fieldSize, newValues, PETSC_OWN_POINTER, newIS)); 10529566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DMPLEX_DistributeField, dm, 0, 0, 0)); 105370034214SMatthew G. Knepley PetscFunctionReturn(0); 105470034214SMatthew G. Knepley } 105570034214SMatthew G. Knepley 105670034214SMatthew G. Knepley /*@ 105770034214SMatthew G. Knepley DMPlexDistributeData - Distribute field data to match a given PetscSF, usually the SF from mesh distribution 105870034214SMatthew G. Knepley 1059d083f849SBarry Smith Collective on dm 106070034214SMatthew G. Knepley 106170034214SMatthew G. Knepley Input Parameters: 106270034214SMatthew G. Knepley + dm - The DMPlex object 106370034214SMatthew G. Knepley . pointSF - The PetscSF describing the communication pattern 106470034214SMatthew G. Knepley . originalSection - The PetscSection for existing data layout 106570034214SMatthew G. Knepley . datatype - The type of data 106670034214SMatthew G. Knepley - originalData - The existing data 106770034214SMatthew G. Knepley 106870034214SMatthew G. Knepley Output Parameters: 106970034214SMatthew G. Knepley + newSection - The PetscSection describing the new data layout 107070034214SMatthew G. Knepley - newData - The new data 107170034214SMatthew G. Knepley 107270034214SMatthew G. Knepley Level: developer 107370034214SMatthew G. Knepley 1074db781477SPatrick Sanan .seealso: `DMPlexDistribute()`, `DMPlexDistributeField()` 107570034214SMatthew G. Knepley @*/ 10769371c9d4SSatish Balay PetscErrorCode DMPlexDistributeData(DM dm, PetscSF pointSF, PetscSection originalSection, MPI_Datatype datatype, void *originalData, PetscSection newSection, void **newData) { 107770034214SMatthew G. Knepley PetscSF fieldSF; 107870034214SMatthew G. Knepley PetscInt *remoteOffsets, fieldSize; 107970034214SMatthew G. Knepley PetscMPIInt dataSize; 108070034214SMatthew G. Knepley 108170034214SMatthew G. Knepley PetscFunctionBegin; 10829566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DMPLEX_DistributeData, dm, 0, 0, 0)); 10839566063dSJacob Faibussowitsch PetscCall(PetscSFDistributeSection(pointSF, originalSection, &remoteOffsets, newSection)); 108470034214SMatthew G. Knepley 10859566063dSJacob Faibussowitsch PetscCall(PetscSectionGetStorageSize(newSection, &fieldSize)); 10869566063dSJacob Faibussowitsch PetscCallMPI(MPI_Type_size(datatype, &dataSize)); 10879566063dSJacob Faibussowitsch PetscCall(PetscMalloc(fieldSize * dataSize, newData)); 108870034214SMatthew G. Knepley 10899566063dSJacob Faibussowitsch PetscCall(PetscSFCreateSectionSF(pointSF, originalSection, remoteOffsets, newSection, &fieldSF)); 10909566063dSJacob Faibussowitsch PetscCall(PetscFree(remoteOffsets)); 10919566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(fieldSF, datatype, originalData, *newData, MPI_REPLACE)); 10929566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(fieldSF, datatype, originalData, *newData, MPI_REPLACE)); 10939566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&fieldSF)); 10949566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DMPLEX_DistributeData, dm, 0, 0, 0)); 109570034214SMatthew G. Knepley PetscFunctionReturn(0); 109670034214SMatthew G. Knepley } 109770034214SMatthew G. Knepley 10989371c9d4SSatish Balay static PetscErrorCode DMPlexDistributeCones(DM dm, PetscSF migrationSF, ISLocalToGlobalMapping original, ISLocalToGlobalMapping renumbering, DM dmParallel) { 1099cc71bff1SMichael Lange DM_Plex *pmesh = (DM_Plex *)(dmParallel)->data; 1100cc71bff1SMichael Lange MPI_Comm comm; 1101cc71bff1SMichael Lange PetscSF coneSF; 1102cc71bff1SMichael Lange PetscSection originalConeSection, newConeSection; 1103ac04eaf7SToby Isaac PetscInt *remoteOffsets, *cones, *globCones, *newCones, newConesSize; 1104cc71bff1SMichael Lange PetscBool flg; 1105cc71bff1SMichael Lange 1106cc71bff1SMichael Lange PetscFunctionBegin; 1107cc71bff1SMichael Lange PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 11080c86c063SLisandro Dalcin PetscValidHeaderSpecific(dmParallel, DM_CLASSID, 5); 11099566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DMPLEX_DistributeCones, dm, 0, 0, 0)); 1110cc71bff1SMichael Lange /* Distribute cone section */ 11119566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)dm, &comm)); 11129566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSection(dm, &originalConeSection)); 11139566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSection(dmParallel, &newConeSection)); 11149566063dSJacob Faibussowitsch PetscCall(PetscSFDistributeSection(migrationSF, originalConeSection, &remoteOffsets, newConeSection)); 11159566063dSJacob Faibussowitsch PetscCall(DMSetUp(dmParallel)); 1116cc71bff1SMichael Lange /* Communicate and renumber cones */ 11179566063dSJacob Faibussowitsch PetscCall(PetscSFCreateSectionSF(migrationSF, originalConeSection, remoteOffsets, newConeSection, &coneSF)); 11189566063dSJacob Faibussowitsch PetscCall(PetscFree(remoteOffsets)); 11199566063dSJacob Faibussowitsch PetscCall(DMPlexGetCones(dm, &cones)); 1120ac04eaf7SToby Isaac if (original) { 1121ac04eaf7SToby Isaac PetscInt numCones; 1122ac04eaf7SToby Isaac 11239566063dSJacob Faibussowitsch PetscCall(PetscSectionGetStorageSize(originalConeSection, &numCones)); 11249566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(numCones, &globCones)); 11259566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingApplyBlock(original, numCones, cones, globCones)); 1126367003a6SStefano Zampini } else { 1127ac04eaf7SToby Isaac globCones = cones; 1128ac04eaf7SToby Isaac } 11299566063dSJacob Faibussowitsch PetscCall(DMPlexGetCones(dmParallel, &newCones)); 11309566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(coneSF, MPIU_INT, globCones, newCones, MPI_REPLACE)); 11319566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(coneSF, MPIU_INT, globCones, newCones, MPI_REPLACE)); 11321baa6e33SBarry Smith if (original) PetscCall(PetscFree(globCones)); 11339566063dSJacob Faibussowitsch PetscCall(PetscSectionGetStorageSize(newConeSection, &newConesSize)); 11349566063dSJacob Faibussowitsch PetscCall(ISGlobalToLocalMappingApplyBlock(renumbering, IS_GTOLM_MASK, newConesSize, newCones, NULL, newCones)); 113576bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 11363533c52bSMatthew G. Knepley PetscInt p; 11373533c52bSMatthew G. Knepley PetscBool valid = PETSC_TRUE; 11383533c52bSMatthew G. Knepley for (p = 0; p < newConesSize; ++p) { 11399371c9d4SSatish Balay if (newCones[p] < 0) { 11409371c9d4SSatish Balay valid = PETSC_FALSE; 11419371c9d4SSatish Balay PetscCall(PetscPrintf(PETSC_COMM_SELF, "[%d] Point %" PetscInt_FMT " not in overlap SF\n", PetscGlobalRank, p)); 11429371c9d4SSatish Balay } 11433533c52bSMatthew G. Knepley } 114428b400f6SJacob Faibussowitsch PetscCheck(valid, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Invalid global to local map"); 11453533c52bSMatthew G. Knepley } 11469566063dSJacob Faibussowitsch PetscCall(PetscOptionsHasName(((PetscObject)dm)->options, ((PetscObject)dm)->prefix, "-cones_view", &flg)); 1147cc71bff1SMichael Lange if (flg) { 11489566063dSJacob Faibussowitsch PetscCall(PetscPrintf(comm, "Serial Cone Section:\n")); 11499566063dSJacob Faibussowitsch PetscCall(PetscSectionView(originalConeSection, PETSC_VIEWER_STDOUT_(comm))); 11509566063dSJacob Faibussowitsch PetscCall(PetscPrintf(comm, "Parallel Cone Section:\n")); 11519566063dSJacob Faibussowitsch PetscCall(PetscSectionView(newConeSection, PETSC_VIEWER_STDOUT_(comm))); 11529566063dSJacob Faibussowitsch PetscCall(PetscSFView(coneSF, NULL)); 1153cc71bff1SMichael Lange } 11549566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeOrientations(dm, &cones)); 11559566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeOrientations(dmParallel, &newCones)); 11569566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(coneSF, MPIU_INT, cones, newCones, MPI_REPLACE)); 11579566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(coneSF, MPIU_INT, cones, newCones, MPI_REPLACE)); 11589566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&coneSF)); 11599566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DMPLEX_DistributeCones, dm, 0, 0, 0)); 1160eaf898f9SPatrick Sanan /* Create supports and stratify DMPlex */ 1161cc71bff1SMichael Lange { 1162cc71bff1SMichael Lange PetscInt pStart, pEnd; 1163cc71bff1SMichael Lange 11649566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(pmesh->coneSection, &pStart, &pEnd)); 11659566063dSJacob Faibussowitsch PetscCall(PetscSectionSetChart(pmesh->supportSection, pStart, pEnd)); 1166cc71bff1SMichael Lange } 11679566063dSJacob Faibussowitsch PetscCall(DMPlexSymmetrize(dmParallel)); 11689566063dSJacob Faibussowitsch PetscCall(DMPlexStratify(dmParallel)); 11691cf84007SMatthew G. Knepley { 11701cf84007SMatthew G. Knepley PetscBool useCone, useClosure, useAnchors; 11711cf84007SMatthew G. Knepley 11729566063dSJacob Faibussowitsch PetscCall(DMGetBasicAdjacency(dm, &useCone, &useClosure)); 11739566063dSJacob Faibussowitsch PetscCall(DMSetBasicAdjacency(dmParallel, useCone, useClosure)); 11749566063dSJacob Faibussowitsch PetscCall(DMPlexGetAdjacencyUseAnchors(dm, &useAnchors)); 11759566063dSJacob Faibussowitsch PetscCall(DMPlexSetAdjacencyUseAnchors(dmParallel, useAnchors)); 11761cf84007SMatthew G. Knepley } 1177cc71bff1SMichael Lange PetscFunctionReturn(0); 1178cc71bff1SMichael Lange } 1179cc71bff1SMichael Lange 11809371c9d4SSatish Balay static PetscErrorCode DMPlexDistributeCoordinates(DM dm, PetscSF migrationSF, DM dmParallel) { 11810df0e737SMichael Lange MPI_Comm comm; 11829318fe57SMatthew G. Knepley DM cdm, cdmParallel; 11830df0e737SMichael Lange PetscSection originalCoordSection, newCoordSection; 11840df0e737SMichael Lange Vec originalCoordinates, newCoordinates; 11850df0e737SMichael Lange PetscInt bs; 11860df0e737SMichael Lange const char *name; 11874fb89dddSMatthew G. Knepley const PetscReal *maxCell, *Lstart, *L; 11880df0e737SMichael Lange 11890df0e737SMichael Lange PetscFunctionBegin; 11900df0e737SMichael Lange PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 11910c86c063SLisandro Dalcin PetscValidHeaderSpecific(dmParallel, DM_CLASSID, 3); 11920df0e737SMichael Lange 11939566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)dm, &comm)); 11946858538eSMatthew G. Knepley PetscCall(DMGetCoordinateDM(dm, &cdm)); 11956858538eSMatthew G. Knepley PetscCall(DMGetCoordinateDM(dmParallel, &cdmParallel)); 11966858538eSMatthew G. Knepley PetscCall(DMCopyDisc(cdm, cdmParallel)); 11979566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateSection(dm, &originalCoordSection)); 11989566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateSection(dmParallel, &newCoordSection)); 11999566063dSJacob Faibussowitsch PetscCall(DMGetCoordinatesLocal(dm, &originalCoordinates)); 12000df0e737SMichael Lange if (originalCoordinates) { 12019566063dSJacob Faibussowitsch PetscCall(VecCreate(PETSC_COMM_SELF, &newCoordinates)); 12029566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)originalCoordinates, &name)); 12039566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)newCoordinates, name)); 12040df0e737SMichael Lange 12059566063dSJacob Faibussowitsch PetscCall(DMPlexDistributeField(dm, migrationSF, originalCoordSection, originalCoordinates, newCoordSection, newCoordinates)); 12069566063dSJacob Faibussowitsch PetscCall(DMSetCoordinatesLocal(dmParallel, newCoordinates)); 12079566063dSJacob Faibussowitsch PetscCall(VecGetBlockSize(originalCoordinates, &bs)); 12089566063dSJacob Faibussowitsch PetscCall(VecSetBlockSize(newCoordinates, bs)); 12099566063dSJacob Faibussowitsch PetscCall(VecDestroy(&newCoordinates)); 12100df0e737SMichael Lange } 12116858538eSMatthew G. Knepley 12126858538eSMatthew G. Knepley PetscCall(PetscObjectGetComm((PetscObject)dm, &comm)); 12134fb89dddSMatthew G. Knepley PetscCall(DMGetPeriodicity(dm, &maxCell, &Lstart, &L)); 12144fb89dddSMatthew G. Knepley PetscCall(DMSetPeriodicity(dmParallel, maxCell, Lstart, L)); 12156858538eSMatthew G. Knepley PetscCall(DMGetCellCoordinateDM(dm, &cdm)); 12166858538eSMatthew G. Knepley if (cdm) { 12176858538eSMatthew G. Knepley PetscCall(DMClone(dmParallel, &cdmParallel)); 12186858538eSMatthew G. Knepley PetscCall(DMSetCellCoordinateDM(dmParallel, cdmParallel)); 12199566063dSJacob Faibussowitsch PetscCall(DMCopyDisc(cdm, cdmParallel)); 12206858538eSMatthew G. Knepley PetscCall(DMDestroy(&cdmParallel)); 12216858538eSMatthew G. Knepley PetscCall(DMGetCellCoordinateSection(dm, &originalCoordSection)); 12226858538eSMatthew G. Knepley PetscCall(DMGetCellCoordinatesLocal(dm, &originalCoordinates)); 12236858538eSMatthew G. Knepley PetscCall(PetscSectionCreate(comm, &newCoordSection)); 12246858538eSMatthew G. Knepley if (originalCoordinates) { 12256858538eSMatthew G. Knepley PetscCall(VecCreate(PETSC_COMM_SELF, &newCoordinates)); 12266858538eSMatthew G. Knepley PetscCall(PetscObjectGetName((PetscObject)originalCoordinates, &name)); 12276858538eSMatthew G. Knepley PetscCall(PetscObjectSetName((PetscObject)newCoordinates, name)); 12286858538eSMatthew G. Knepley 12296858538eSMatthew G. Knepley PetscCall(DMPlexDistributeField(dm, migrationSF, originalCoordSection, originalCoordinates, newCoordSection, newCoordinates)); 12306858538eSMatthew G. Knepley PetscCall(VecGetBlockSize(originalCoordinates, &bs)); 12316858538eSMatthew G. Knepley PetscCall(VecSetBlockSize(newCoordinates, bs)); 12326858538eSMatthew G. Knepley PetscCall(DMSetCellCoordinateSection(dmParallel, bs, newCoordSection)); 12336858538eSMatthew G. Knepley PetscCall(DMSetCellCoordinatesLocal(dmParallel, newCoordinates)); 12346858538eSMatthew G. Knepley PetscCall(VecDestroy(&newCoordinates)); 12356858538eSMatthew G. Knepley } 12366858538eSMatthew G. Knepley PetscCall(PetscSectionDestroy(&newCoordSection)); 12376858538eSMatthew G. Knepley } 12380df0e737SMichael Lange PetscFunctionReturn(0); 12390df0e737SMichael Lange } 12400df0e737SMichael Lange 12419371c9d4SSatish Balay static PetscErrorCode DMPlexDistributeLabels(DM dm, PetscSF migrationSF, DM dmParallel) { 1242df0420ecSMatthew G. Knepley DM_Plex *mesh = (DM_Plex *)dm->data; 12430df0e737SMichael Lange MPI_Comm comm; 12447980c9d4SMatthew G. Knepley DMLabel depthLabel; 12450df0e737SMichael Lange PetscMPIInt rank; 12467980c9d4SMatthew G. Knepley PetscInt depth, d, numLabels, numLocalLabels, l; 1247df0420ecSMatthew G. Knepley PetscBool hasLabels = PETSC_FALSE, lsendDepth, sendDepth; 1248df0420ecSMatthew G. Knepley PetscObjectState depthState = -1; 12490df0e737SMichael Lange 12500df0e737SMichael Lange PetscFunctionBegin; 12510df0e737SMichael Lange PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 12520c86c063SLisandro Dalcin PetscValidHeaderSpecific(dmParallel, DM_CLASSID, 3); 12530c86c063SLisandro Dalcin 12549566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DMPLEX_DistributeLabels, dm, 0, 0, 0)); 12559566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)dm, &comm)); 12569566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 12570df0e737SMichael Lange 1258df0420ecSMatthew G. Knepley /* If the user has changed the depth label, communicate it instead */ 12599566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepth(dm, &depth)); 12609566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthLabel(dm, &depthLabel)); 12619566063dSJacob Faibussowitsch if (depthLabel) PetscCall(PetscObjectStateGet((PetscObject)depthLabel, &depthState)); 1262df0420ecSMatthew G. Knepley lsendDepth = mesh->depthState != depthState ? PETSC_TRUE : PETSC_FALSE; 12631c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&lsendDepth, &sendDepth, 1, MPIU_BOOL, MPI_LOR, comm)); 1264df0420ecSMatthew G. Knepley if (sendDepth) { 12659566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthLabel(dmParallel, &dmParallel->depthLabel)); 12669566063dSJacob Faibussowitsch PetscCall(DMRemoveLabelBySelf(dmParallel, &dmParallel->depthLabel, PETSC_FALSE)); 1267df0420ecSMatthew G. Knepley } 1268d995df53SMatthew G. Knepley /* Everyone must have either the same number of labels, or none */ 12699566063dSJacob Faibussowitsch PetscCall(DMGetNumLabels(dm, &numLocalLabels)); 1270d995df53SMatthew G. Knepley numLabels = numLocalLabels; 12719566063dSJacob Faibussowitsch PetscCallMPI(MPI_Bcast(&numLabels, 1, MPIU_INT, 0, comm)); 1272627847f0SMatthew G. Knepley if (numLabels == numLocalLabels) hasLabels = PETSC_TRUE; 12735d80c0bfSVaclav Hapla for (l = 0; l < numLabels; ++l) { 1274bdd2d751SMichael Lange DMLabel label = NULL, labelNew = NULL; 127583e10cb3SLisandro Dalcin PetscBool isDepth, lisOutput = PETSC_TRUE, isOutput; 1276d67d17b1SMatthew G. Knepley const char *name = NULL; 12770df0e737SMichael Lange 1278d67d17b1SMatthew G. Knepley if (hasLabels) { 12799566063dSJacob Faibussowitsch PetscCall(DMGetLabelByNum(dm, l, &label)); 12800df0e737SMichael Lange /* Skip "depth" because it is recreated */ 12819566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)label, &name)); 12829566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, "depth", &isDepth)); 1283d67d17b1SMatthew G. Knepley } 12849566063dSJacob Faibussowitsch PetscCallMPI(MPI_Bcast(&isDepth, 1, MPIU_BOOL, 0, comm)); 128583e10cb3SLisandro Dalcin if (isDepth && !sendDepth) continue; 12869566063dSJacob Faibussowitsch PetscCall(DMLabelDistribute(label, migrationSF, &labelNew)); 128783e10cb3SLisandro Dalcin if (isDepth) { 12887980c9d4SMatthew G. Knepley /* Put in any missing strata which can occur if users are managing the depth label themselves */ 12897980c9d4SMatthew G. Knepley PetscInt gdepth; 12907980c9d4SMatthew G. Knepley 12911c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&depth, &gdepth, 1, MPIU_INT, MPI_MAX, comm)); 129263a3b9bcSJacob Faibussowitsch PetscCheck(!(depth >= 0) || !(gdepth != depth), PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Inconsistent Plex depth %" PetscInt_FMT " != %" PetscInt_FMT, depth, gdepth); 12937980c9d4SMatthew G. Knepley for (d = 0; d <= gdepth; ++d) { 12947980c9d4SMatthew G. Knepley PetscBool has; 12957980c9d4SMatthew G. Knepley 12969566063dSJacob Faibussowitsch PetscCall(DMLabelHasStratum(labelNew, d, &has)); 12979566063dSJacob Faibussowitsch if (!has) PetscCall(DMLabelAddStratum(labelNew, d)); 12987980c9d4SMatthew G. Knepley } 12997980c9d4SMatthew G. Knepley } 13009566063dSJacob Faibussowitsch PetscCall(DMAddLabel(dmParallel, labelNew)); 130183e10cb3SLisandro Dalcin /* Put the output flag in the new label */ 13029566063dSJacob Faibussowitsch if (hasLabels) PetscCall(DMGetLabelOutput(dm, name, &lisOutput)); 13031c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&lisOutput, &isOutput, 1, MPIU_BOOL, MPI_LAND, comm)); 13049566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)labelNew, &name)); 13059566063dSJacob Faibussowitsch PetscCall(DMSetLabelOutput(dmParallel, name, isOutput)); 13069566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&labelNew)); 13070df0e737SMichael Lange } 1308695799ffSMatthew G. Knepley { 1309695799ffSMatthew G. Knepley DMLabel ctLabel; 1310695799ffSMatthew G. Knepley 1311695799ffSMatthew G. Knepley // Reset label for fast lookup 1312695799ffSMatthew G. Knepley PetscCall(DMPlexGetCellTypeLabel(dmParallel, &ctLabel)); 1313695799ffSMatthew G. Knepley PetscCall(DMLabelMakeAllInvalid_Internal(ctLabel)); 1314695799ffSMatthew G. Knepley } 13159566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DMPLEX_DistributeLabels, dm, 0, 0, 0)); 13160df0e737SMichael Lange PetscFunctionReturn(0); 13170df0e737SMichael Lange } 13180df0e737SMichael Lange 13199371c9d4SSatish Balay static PetscErrorCode DMPlexDistributeSetupTree(DM dm, PetscSF migrationSF, ISLocalToGlobalMapping original, ISLocalToGlobalMapping renumbering, DM dmParallel) { 132015078cd4SMichael Lange DM_Plex *mesh = (DM_Plex *)dm->data; 132115078cd4SMichael Lange DM_Plex *pmesh = (DM_Plex *)(dmParallel)->data; 1322a6f36705SMichael Lange MPI_Comm comm; 1323a6f36705SMichael Lange DM refTree; 1324a6f36705SMichael Lange PetscSection origParentSection, newParentSection; 1325a6f36705SMichael Lange PetscInt *origParents, *origChildIDs; 1326a6f36705SMichael Lange PetscBool flg; 1327a6f36705SMichael Lange 1328a6f36705SMichael Lange PetscFunctionBegin; 1329a6f36705SMichael Lange PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 13300c86c063SLisandro Dalcin PetscValidHeaderSpecific(dmParallel, DM_CLASSID, 5); 13319566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)dm, &comm)); 1332a6f36705SMichael Lange 1333a6f36705SMichael Lange /* Set up tree */ 13349566063dSJacob Faibussowitsch PetscCall(DMPlexGetReferenceTree(dm, &refTree)); 13359566063dSJacob Faibussowitsch PetscCall(DMPlexSetReferenceTree(dmParallel, refTree)); 13369566063dSJacob Faibussowitsch PetscCall(DMPlexGetTree(dm, &origParentSection, &origParents, &origChildIDs, NULL, NULL)); 1337a6f36705SMichael Lange if (origParentSection) { 1338a6f36705SMichael Lange PetscInt pStart, pEnd; 133908633170SToby Isaac PetscInt *newParents, *newChildIDs, *globParents; 1340a6f36705SMichael Lange PetscInt *remoteOffsetsParents, newParentSize; 1341a6f36705SMichael Lange PetscSF parentSF; 1342a6f36705SMichael Lange 13439566063dSJacob Faibussowitsch PetscCall(DMPlexGetChart(dmParallel, &pStart, &pEnd)); 13449566063dSJacob Faibussowitsch PetscCall(PetscSectionCreate(PetscObjectComm((PetscObject)dmParallel), &newParentSection)); 13459566063dSJacob Faibussowitsch PetscCall(PetscSectionSetChart(newParentSection, pStart, pEnd)); 13469566063dSJacob Faibussowitsch PetscCall(PetscSFDistributeSection(migrationSF, origParentSection, &remoteOffsetsParents, newParentSection)); 13479566063dSJacob Faibussowitsch PetscCall(PetscSFCreateSectionSF(migrationSF, origParentSection, remoteOffsetsParents, newParentSection, &parentSF)); 13489566063dSJacob Faibussowitsch PetscCall(PetscFree(remoteOffsetsParents)); 13499566063dSJacob Faibussowitsch PetscCall(PetscSectionGetStorageSize(newParentSection, &newParentSize)); 13509566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(newParentSize, &newParents, newParentSize, &newChildIDs)); 135108633170SToby Isaac if (original) { 135208633170SToby Isaac PetscInt numParents; 135308633170SToby Isaac 13549566063dSJacob Faibussowitsch PetscCall(PetscSectionGetStorageSize(origParentSection, &numParents)); 13559566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(numParents, &globParents)); 13569566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingApplyBlock(original, numParents, origParents, globParents)); 13579371c9d4SSatish Balay } else { 135808633170SToby Isaac globParents = origParents; 135908633170SToby Isaac } 13609566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(parentSF, MPIU_INT, globParents, newParents, MPI_REPLACE)); 13619566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(parentSF, MPIU_INT, globParents, newParents, MPI_REPLACE)); 13621baa6e33SBarry Smith if (original) PetscCall(PetscFree(globParents)); 13639566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(parentSF, MPIU_INT, origChildIDs, newChildIDs, MPI_REPLACE)); 13649566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(parentSF, MPIU_INT, origChildIDs, newChildIDs, MPI_REPLACE)); 13659566063dSJacob Faibussowitsch PetscCall(ISGlobalToLocalMappingApplyBlock(renumbering, IS_GTOLM_MASK, newParentSize, newParents, NULL, newParents)); 136676bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 13674a54e071SToby Isaac PetscInt p; 13684a54e071SToby Isaac PetscBool valid = PETSC_TRUE; 13694a54e071SToby Isaac for (p = 0; p < newParentSize; ++p) { 13709371c9d4SSatish Balay if (newParents[p] < 0) { 13719371c9d4SSatish Balay valid = PETSC_FALSE; 13729371c9d4SSatish Balay PetscCall(PetscPrintf(PETSC_COMM_SELF, "Point %" PetscInt_FMT " not in overlap SF\n", p)); 13739371c9d4SSatish Balay } 13744a54e071SToby Isaac } 137528b400f6SJacob Faibussowitsch PetscCheck(valid, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Invalid global to local map"); 13764a54e071SToby Isaac } 13779566063dSJacob Faibussowitsch PetscCall(PetscOptionsHasName(((PetscObject)dm)->options, ((PetscObject)dm)->prefix, "-parents_view", &flg)); 1378a6f36705SMichael Lange if (flg) { 13799566063dSJacob Faibussowitsch PetscCall(PetscPrintf(comm, "Serial Parent Section: \n")); 13809566063dSJacob Faibussowitsch PetscCall(PetscSectionView(origParentSection, PETSC_VIEWER_STDOUT_(comm))); 13819566063dSJacob Faibussowitsch PetscCall(PetscPrintf(comm, "Parallel Parent Section: \n")); 13829566063dSJacob Faibussowitsch PetscCall(PetscSectionView(newParentSection, PETSC_VIEWER_STDOUT_(comm))); 13839566063dSJacob Faibussowitsch PetscCall(PetscSFView(parentSF, NULL)); 1384a6f36705SMichael Lange } 13859566063dSJacob Faibussowitsch PetscCall(DMPlexSetTree(dmParallel, newParentSection, newParents, newChildIDs)); 13869566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&newParentSection)); 13879566063dSJacob Faibussowitsch PetscCall(PetscFree2(newParents, newChildIDs)); 13889566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&parentSF)); 1389a6f36705SMichael Lange } 139015078cd4SMichael Lange pmesh->useAnchors = mesh->useAnchors; 1391a6f36705SMichael Lange PetscFunctionReturn(0); 1392a6f36705SMichael Lange } 13930df0e737SMichael Lange 13949371c9d4SSatish Balay PETSC_UNUSED static PetscErrorCode DMPlexDistributeSF(DM dm, PetscSF migrationSF, DM dmParallel) { 13959852e123SBarry Smith PetscMPIInt rank, size; 13964eca1733SMichael Lange MPI_Comm comm; 13974eca1733SMichael Lange 13984eca1733SMichael Lange PetscFunctionBegin; 13994eca1733SMichael Lange PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 14000c86c063SLisandro Dalcin PetscValidHeaderSpecific(dmParallel, DM_CLASSID, 3); 14014eca1733SMichael Lange 14024eca1733SMichael Lange /* Create point SF for parallel mesh */ 14039566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DMPLEX_DistributeSF, dm, 0, 0, 0)); 14049566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)dm, &comm)); 14059566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 14069566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 14074eca1733SMichael Lange { 14084eca1733SMichael Lange const PetscInt *leaves; 14094eca1733SMichael Lange PetscSFNode *remotePoints, *rowners, *lowners; 14104eca1733SMichael Lange PetscInt numRoots, numLeaves, numGhostPoints = 0, p, gp, *ghostPoints; 14114eca1733SMichael Lange PetscInt pStart, pEnd; 14124eca1733SMichael Lange 14139566063dSJacob Faibussowitsch PetscCall(DMPlexGetChart(dmParallel, &pStart, &pEnd)); 14149566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(migrationSF, &numRoots, &numLeaves, &leaves, NULL)); 14159566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(numRoots, &rowners, numLeaves, &lowners)); 14164eca1733SMichael Lange for (p = 0; p < numRoots; p++) { 14174eca1733SMichael Lange rowners[p].rank = -1; 14184eca1733SMichael Lange rowners[p].index = -1; 14194eca1733SMichael Lange } 14209566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(migrationSF, MPIU_2INT, rowners, lowners, MPI_REPLACE)); 14219566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(migrationSF, MPIU_2INT, rowners, lowners, MPI_REPLACE)); 14224eca1733SMichael Lange for (p = 0; p < numLeaves; ++p) { 14234eca1733SMichael Lange if (lowners[p].rank < 0 || lowners[p].rank == rank) { /* Either put in a bid or we know we own it */ 14244eca1733SMichael Lange lowners[p].rank = rank; 14254eca1733SMichael Lange lowners[p].index = leaves ? leaves[p] : p; 14264eca1733SMichael Lange } else if (lowners[p].rank >= 0) { /* Point already claimed so flag so that MAXLOC does not listen to us */ 14274eca1733SMichael Lange lowners[p].rank = -2; 14284eca1733SMichael Lange lowners[p].index = -2; 14294eca1733SMichael Lange } 14304eca1733SMichael Lange } 14314eca1733SMichael Lange for (p = 0; p < numRoots; p++) { /* Root must not participate in the rediction, flag so that MAXLOC does not use */ 14324eca1733SMichael Lange rowners[p].rank = -3; 14334eca1733SMichael Lange rowners[p].index = -3; 14344eca1733SMichael Lange } 14359566063dSJacob Faibussowitsch PetscCall(PetscSFReduceBegin(migrationSF, MPIU_2INT, lowners, rowners, MPI_MAXLOC)); 14369566063dSJacob Faibussowitsch PetscCall(PetscSFReduceEnd(migrationSF, MPIU_2INT, lowners, rowners, MPI_MAXLOC)); 14379566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(migrationSF, MPIU_2INT, rowners, lowners, MPI_REPLACE)); 14389566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(migrationSF, MPIU_2INT, rowners, lowners, MPI_REPLACE)); 14394eca1733SMichael Lange for (p = 0; p < numLeaves; ++p) { 14401dca8a05SBarry Smith PetscCheck(lowners[p].rank >= 0 && lowners[p].index >= 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Cell partition corrupt: point not claimed"); 14414eca1733SMichael Lange if (lowners[p].rank != rank) ++numGhostPoints; 14424eca1733SMichael Lange } 14439566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(numGhostPoints, &ghostPoints)); 14449566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(numGhostPoints, &remotePoints)); 14454eca1733SMichael Lange for (p = 0, gp = 0; p < numLeaves; ++p) { 14464eca1733SMichael Lange if (lowners[p].rank != rank) { 14474eca1733SMichael Lange ghostPoints[gp] = leaves ? leaves[p] : p; 14484eca1733SMichael Lange remotePoints[gp].rank = lowners[p].rank; 14494eca1733SMichael Lange remotePoints[gp].index = lowners[p].index; 14504eca1733SMichael Lange ++gp; 14514eca1733SMichael Lange } 14524eca1733SMichael Lange } 14539566063dSJacob Faibussowitsch PetscCall(PetscFree2(rowners, lowners)); 14549566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph((dmParallel)->sf, pEnd - pStart, numGhostPoints, ghostPoints, PETSC_OWN_POINTER, remotePoints, PETSC_OWN_POINTER)); 14559566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions((dmParallel)->sf)); 14564eca1733SMichael Lange } 14571cf84007SMatthew G. Knepley { 14581cf84007SMatthew G. Knepley PetscBool useCone, useClosure, useAnchors; 14591cf84007SMatthew G. Knepley 14609566063dSJacob Faibussowitsch PetscCall(DMGetBasicAdjacency(dm, &useCone, &useClosure)); 14619566063dSJacob Faibussowitsch PetscCall(DMSetBasicAdjacency(dmParallel, useCone, useClosure)); 14629566063dSJacob Faibussowitsch PetscCall(DMPlexGetAdjacencyUseAnchors(dm, &useAnchors)); 14639566063dSJacob Faibussowitsch PetscCall(DMPlexSetAdjacencyUseAnchors(dmParallel, useAnchors)); 14641cf84007SMatthew G. Knepley } 14659566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DMPLEX_DistributeSF, dm, 0, 0, 0)); 14664eca1733SMichael Lange PetscFunctionReturn(0); 14674eca1733SMichael Lange } 14684eca1733SMichael Lange 146998ba2d7fSLawrence Mitchell /*@ 147098ba2d7fSLawrence Mitchell DMPlexSetPartitionBalance - Should distribution of the DM attempt to balance the shared point partition? 147198ba2d7fSLawrence Mitchell 147298ba2d7fSLawrence Mitchell Input Parameters: 147398ba2d7fSLawrence Mitchell + dm - The DMPlex object 147498ba2d7fSLawrence Mitchell - flg - Balance the partition? 147598ba2d7fSLawrence Mitchell 147698ba2d7fSLawrence Mitchell Level: intermediate 147798ba2d7fSLawrence Mitchell 1478db781477SPatrick Sanan .seealso: `DMPlexDistribute()`, `DMPlexGetPartitionBalance()` 147998ba2d7fSLawrence Mitchell @*/ 14809371c9d4SSatish Balay PetscErrorCode DMPlexSetPartitionBalance(DM dm, PetscBool flg) { 148198ba2d7fSLawrence Mitchell DM_Plex *mesh = (DM_Plex *)dm->data; 148298ba2d7fSLawrence Mitchell 148398ba2d7fSLawrence Mitchell PetscFunctionBegin; 148498ba2d7fSLawrence Mitchell mesh->partitionBalance = flg; 148598ba2d7fSLawrence Mitchell PetscFunctionReturn(0); 148698ba2d7fSLawrence Mitchell } 148798ba2d7fSLawrence Mitchell 148898ba2d7fSLawrence Mitchell /*@ 148998ba2d7fSLawrence Mitchell DMPlexGetPartitionBalance - Does distribution of the DM attempt to balance the shared point partition? 149098ba2d7fSLawrence Mitchell 149198ba2d7fSLawrence Mitchell Input Parameter: 1492a2b725a8SWilliam Gropp . dm - The DMPlex object 149398ba2d7fSLawrence Mitchell 149498ba2d7fSLawrence Mitchell Output Parameter: 1495a2b725a8SWilliam Gropp . flg - Balance the partition? 149698ba2d7fSLawrence Mitchell 149798ba2d7fSLawrence Mitchell Level: intermediate 149898ba2d7fSLawrence Mitchell 1499db781477SPatrick Sanan .seealso: `DMPlexDistribute()`, `DMPlexSetPartitionBalance()` 150098ba2d7fSLawrence Mitchell @*/ 15019371c9d4SSatish Balay PetscErrorCode DMPlexGetPartitionBalance(DM dm, PetscBool *flg) { 150298ba2d7fSLawrence Mitchell DM_Plex *mesh = (DM_Plex *)dm->data; 150398ba2d7fSLawrence Mitchell 150498ba2d7fSLawrence Mitchell PetscFunctionBegin; 150598ba2d7fSLawrence Mitchell PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 1506534a8f05SLisandro Dalcin PetscValidBoolPointer(flg, 2); 150798ba2d7fSLawrence Mitchell *flg = mesh->partitionBalance; 150898ba2d7fSLawrence Mitchell PetscFunctionReturn(0); 150998ba2d7fSLawrence Mitchell } 151098ba2d7fSLawrence Mitchell 1511fc02256fSLawrence Mitchell typedef struct { 1512fc02256fSLawrence Mitchell PetscInt vote, rank, index; 1513fc02256fSLawrence Mitchell } Petsc3Int; 1514fc02256fSLawrence Mitchell 1515fc02256fSLawrence Mitchell /* MaxLoc, but carry a third piece of information around */ 15169371c9d4SSatish Balay static void MPIAPI MaxLocCarry(void *in_, void *inout_, PetscMPIInt *len_, MPI_Datatype *dtype) { 1517fc02256fSLawrence Mitchell Petsc3Int *a = (Petsc3Int *)inout_; 1518fc02256fSLawrence Mitchell Petsc3Int *b = (Petsc3Int *)in_; 1519fc02256fSLawrence Mitchell PetscInt i, len = *len_; 1520fc02256fSLawrence Mitchell for (i = 0; i < len; i++) { 1521fc02256fSLawrence Mitchell if (a[i].vote < b[i].vote) { 1522fc02256fSLawrence Mitchell a[i].vote = b[i].vote; 1523fc02256fSLawrence Mitchell a[i].rank = b[i].rank; 1524fc02256fSLawrence Mitchell a[i].index = b[i].index; 1525fc02256fSLawrence Mitchell } else if (a[i].vote <= b[i].vote) { 1526fc02256fSLawrence Mitchell if (a[i].rank >= b[i].rank) { 1527fc02256fSLawrence Mitchell a[i].rank = b[i].rank; 1528fc02256fSLawrence Mitchell a[i].index = b[i].index; 1529fc02256fSLawrence Mitchell } 1530fc02256fSLawrence Mitchell } 1531fc02256fSLawrence Mitchell } 1532fc02256fSLawrence Mitchell } 1533fc02256fSLawrence Mitchell 1534f5bf2dbfSMichael Lange /*@C 1535a8c5bd36SStefano Zampini DMPlexCreatePointSF - Build a point SF from an SF describing a point migration 1536f5bf2dbfSMichael Lange 1537064ec1f3Sprj- Input Parameters: 1538f5bf2dbfSMichael Lange + dm - The source DMPlex object 1539f5bf2dbfSMichael Lange . migrationSF - The star forest that describes the parallel point remapping 1540d8d19677SJose E. Roman - ownership - Flag causing a vote to determine point ownership 1541f5bf2dbfSMichael Lange 1542f5bf2dbfSMichael Lange Output Parameter: 1543d8d19677SJose E. Roman . pointSF - The star forest describing the point overlap in the remapped DM 1544f5bf2dbfSMichael Lange 15453618482eSVaclav Hapla Notes: 15463618482eSVaclav Hapla Output pointSF is guaranteed to have the array of local indices (leaves) sorted. 15473618482eSVaclav Hapla 1548f5bf2dbfSMichael Lange Level: developer 1549f5bf2dbfSMichael Lange 1550db781477SPatrick Sanan .seealso: `DMPlexDistribute()`, `DMPlexDistributeOverlap()` 1551f5bf2dbfSMichael Lange @*/ 15529371c9d4SSatish Balay PetscErrorCode DMPlexCreatePointSF(DM dm, PetscSF migrationSF, PetscBool ownership, PetscSF *pointSF) { 155323193802SMatthew G. Knepley PetscMPIInt rank, size; 15541627f6ccSMichael Lange PetscInt p, nroots, nleaves, idx, npointLeaves; 1555f5bf2dbfSMichael Lange PetscInt *pointLocal; 1556f5bf2dbfSMichael Lange const PetscInt *leaves; 1557f5bf2dbfSMichael Lange const PetscSFNode *roots; 1558f5bf2dbfSMichael Lange PetscSFNode *rootNodes, *leafNodes, *pointRemote; 155923193802SMatthew G. Knepley Vec shifts; 1560cae3e4f3SLawrence Mitchell const PetscInt numShifts = 13759; 156123193802SMatthew G. Knepley const PetscScalar *shift = NULL; 156223193802SMatthew G. Knepley const PetscBool shiftDebug = PETSC_FALSE; 156398ba2d7fSLawrence Mitchell PetscBool balance; 1564f5bf2dbfSMichael Lange 1565f5bf2dbfSMichael Lange PetscFunctionBegin; 1566f5bf2dbfSMichael Lange PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 15679566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)dm), &rank)); 15689566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)dm), &size)); 15699566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DMPLEX_CreatePointSF, dm, 0, 0, 0)); 1570f5bf2dbfSMichael Lange 15719566063dSJacob Faibussowitsch PetscCall(DMPlexGetPartitionBalance(dm, &balance)); 15729566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(migrationSF, &nroots, &nleaves, &leaves, &roots)); 15739566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(nroots, &rootNodes, nleaves, &leafNodes)); 1574f5bf2dbfSMichael Lange if (ownership) { 1575fc02256fSLawrence Mitchell MPI_Op op; 1576fc02256fSLawrence Mitchell MPI_Datatype datatype; 1577fc02256fSLawrence Mitchell Petsc3Int *rootVote = NULL, *leafVote = NULL; 157823193802SMatthew G. Knepley /* If balancing, we compute a random cyclic shift of the rank for each remote point. That way, the max will evenly distribute among ranks. */ 157998ba2d7fSLawrence Mitchell if (balance) { 158023193802SMatthew G. Knepley PetscRandom r; 158123193802SMatthew G. Knepley 15829566063dSJacob Faibussowitsch PetscCall(PetscRandomCreate(PETSC_COMM_SELF, &r)); 15839566063dSJacob Faibussowitsch PetscCall(PetscRandomSetInterval(r, 0, 2467 * size)); 15849566063dSJacob Faibussowitsch PetscCall(VecCreate(PETSC_COMM_SELF, &shifts)); 15859566063dSJacob Faibussowitsch PetscCall(VecSetSizes(shifts, numShifts, numShifts)); 15869566063dSJacob Faibussowitsch PetscCall(VecSetType(shifts, VECSTANDARD)); 15879566063dSJacob Faibussowitsch PetscCall(VecSetRandom(shifts, r)); 15889566063dSJacob Faibussowitsch PetscCall(PetscRandomDestroy(&r)); 15899566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(shifts, &shift)); 159023193802SMatthew G. Knepley } 159123193802SMatthew G. Knepley 15929566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nroots, &rootVote)); 15939566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nleaves, &leafVote)); 159423193802SMatthew G. Knepley /* Point ownership vote: Process with highest rank owns shared points */ 1595f5bf2dbfSMichael Lange for (p = 0; p < nleaves; ++p) { 159623193802SMatthew G. Knepley if (shiftDebug) { 15979371c9d4SSatish Balay PetscCall(PetscSynchronizedPrintf(PetscObjectComm((PetscObject)dm), "[%d] Point %" PetscInt_FMT " RemotePoint %" PetscInt_FMT " Shift %" PetscInt_FMT " MyRank %" PetscInt_FMT "\n", rank, leaves ? leaves[p] : p, roots[p].index, 15989371c9d4SSatish Balay (PetscInt)PetscRealPart(shift[roots[p].index % numShifts]), (rank + (shift ? (PetscInt)PetscRealPart(shift[roots[p].index % numShifts]) : 0)) % size)); 159923193802SMatthew G. Knepley } 1600f5bf2dbfSMichael Lange /* Either put in a bid or we know we own it */ 1601fc02256fSLawrence Mitchell leafVote[p].vote = (rank + (shift ? (PetscInt)PetscRealPart(shift[roots[p].index % numShifts]) : 0)) % size; 1602fc02256fSLawrence Mitchell leafVote[p].rank = rank; 1603fc02256fSLawrence Mitchell leafVote[p].index = p; 1604f5bf2dbfSMichael Lange } 1605f5bf2dbfSMichael Lange for (p = 0; p < nroots; p++) { 16061627f6ccSMichael Lange /* Root must not participate in the reduction, flag so that MAXLOC does not use */ 1607fc02256fSLawrence Mitchell rootVote[p].vote = -3; 1608fc02256fSLawrence Mitchell rootVote[p].rank = -3; 1609fc02256fSLawrence Mitchell rootVote[p].index = -3; 1610f5bf2dbfSMichael Lange } 16119566063dSJacob Faibussowitsch PetscCallMPI(MPI_Type_contiguous(3, MPIU_INT, &datatype)); 16129566063dSJacob Faibussowitsch PetscCallMPI(MPI_Type_commit(&datatype)); 16139566063dSJacob Faibussowitsch PetscCallMPI(MPI_Op_create(&MaxLocCarry, 1, &op)); 16149566063dSJacob Faibussowitsch PetscCall(PetscSFReduceBegin(migrationSF, datatype, leafVote, rootVote, op)); 16159566063dSJacob Faibussowitsch PetscCall(PetscSFReduceEnd(migrationSF, datatype, leafVote, rootVote, op)); 16169566063dSJacob Faibussowitsch PetscCallMPI(MPI_Op_free(&op)); 16179566063dSJacob Faibussowitsch PetscCallMPI(MPI_Type_free(&datatype)); 1618c091126eSLawrence Mitchell for (p = 0; p < nroots; p++) { 1619fc02256fSLawrence Mitchell rootNodes[p].rank = rootVote[p].rank; 1620fc02256fSLawrence Mitchell rootNodes[p].index = rootVote[p].index; 1621c091126eSLawrence Mitchell } 16229566063dSJacob Faibussowitsch PetscCall(PetscFree(leafVote)); 16239566063dSJacob Faibussowitsch PetscCall(PetscFree(rootVote)); 1624f5bf2dbfSMichael Lange } else { 1625f5bf2dbfSMichael Lange for (p = 0; p < nroots; p++) { 1626f5bf2dbfSMichael Lange rootNodes[p].index = -1; 1627f5bf2dbfSMichael Lange rootNodes[p].rank = rank; 1628fc02256fSLawrence Mitchell } 1629f5bf2dbfSMichael Lange for (p = 0; p < nleaves; p++) { 1630f5bf2dbfSMichael Lange /* Write new local id into old location */ 16319371c9d4SSatish Balay if (roots[p].rank == rank) { rootNodes[roots[p].index].index = leaves ? leaves[p] : p; } 1632f5bf2dbfSMichael Lange } 1633f5bf2dbfSMichael Lange } 16349566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(migrationSF, MPIU_2INT, rootNodes, leafNodes, MPI_REPLACE)); 16359566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(migrationSF, MPIU_2INT, rootNodes, leafNodes, MPI_REPLACE)); 1636f5bf2dbfSMichael Lange 163723193802SMatthew G. Knepley for (npointLeaves = 0, p = 0; p < nleaves; p++) { 1638b0e1264bSMatthew G. Knepley if (leafNodes[p].rank != rank) npointLeaves++; 163923193802SMatthew G. Knepley } 16409566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(npointLeaves, &pointLocal)); 16419566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(npointLeaves, &pointRemote)); 1642f5bf2dbfSMichael Lange for (idx = 0, p = 0; p < nleaves; p++) { 1643b0e1264bSMatthew G. Knepley if (leafNodes[p].rank != rank) { 16443618482eSVaclav Hapla /* Note that pointLocal is automatically sorted as it is sublist of 0, ..., nleaves-1 */ 1645f5bf2dbfSMichael Lange pointLocal[idx] = p; 1646f5bf2dbfSMichael Lange pointRemote[idx] = leafNodes[p]; 1647f5bf2dbfSMichael Lange idx++; 1648f5bf2dbfSMichael Lange } 1649f5bf2dbfSMichael Lange } 165023193802SMatthew G. Knepley if (shift) { 16519566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(shifts, &shift)); 16529566063dSJacob Faibussowitsch PetscCall(VecDestroy(&shifts)); 165323193802SMatthew G. Knepley } 16549566063dSJacob Faibussowitsch if (shiftDebug) PetscCall(PetscSynchronizedFlush(PetscObjectComm((PetscObject)dm), PETSC_STDOUT)); 16559566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)dm), pointSF)); 16569566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions(*pointSF)); 16579566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(*pointSF, nleaves, npointLeaves, pointLocal, PETSC_OWN_POINTER, pointRemote, PETSC_OWN_POINTER)); 16589566063dSJacob Faibussowitsch PetscCall(PetscFree2(rootNodes, leafNodes)); 16599566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DMPLEX_CreatePointSF, dm, 0, 0, 0)); 16606c1ef331SVaclav Hapla if (PetscDefined(USE_DEBUG)) PetscCall(DMPlexCheckPointSF(dm, *pointSF)); 1661f5bf2dbfSMichael Lange PetscFunctionReturn(0); 1662f5bf2dbfSMichael Lange } 1663f5bf2dbfSMichael Lange 166415078cd4SMichael Lange /*@C 166515078cd4SMichael Lange DMPlexMigrate - Migrates internal DM data over the supplied star forest 166615078cd4SMichael Lange 1667d083f849SBarry Smith Collective on dm 166883655b49SVáclav Hapla 1669064ec1f3Sprj- Input Parameters: 167015078cd4SMichael Lange + dm - The source DMPlex object 1671d8d19677SJose E. Roman - sf - The star forest communication context describing the migration pattern 167215078cd4SMichael Lange 167315078cd4SMichael Lange Output Parameter: 1674d8d19677SJose E. Roman . targetDM - The target DMPlex object 167515078cd4SMichael Lange 1676b9f40539SMichael Lange Level: intermediate 167715078cd4SMichael Lange 1678db781477SPatrick Sanan .seealso: `DMPlexDistribute()`, `DMPlexDistributeOverlap()` 167915078cd4SMichael Lange @*/ 16809371c9d4SSatish Balay PetscErrorCode DMPlexMigrate(DM dm, PetscSF sf, DM targetDM) { 1681b9f40539SMichael Lange MPI_Comm comm; 1682cc1750acSStefano Zampini PetscInt dim, cdim, nroots; 1683b9f40539SMichael Lange PetscSF sfPoint; 168415078cd4SMichael Lange ISLocalToGlobalMapping ltogMigration; 1685ac04eaf7SToby Isaac ISLocalToGlobalMapping ltogOriginal = NULL; 168615078cd4SMichael Lange 168715078cd4SMichael Lange PetscFunctionBegin; 168815078cd4SMichael Lange PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 16899566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DMPLEX_Migrate, dm, 0, 0, 0)); 16909566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)dm, &comm)); 16919566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 16929566063dSJacob Faibussowitsch PetscCall(DMSetDimension(targetDM, dim)); 16939566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDim(dm, &cdim)); 16949566063dSJacob Faibussowitsch PetscCall(DMSetCoordinateDim(targetDM, cdim)); 169515078cd4SMichael Lange 1696bfb0467fSMichael Lange /* Check for a one-to-all distribution pattern */ 16979566063dSJacob Faibussowitsch PetscCall(DMGetPointSF(dm, &sfPoint)); 16989566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(sfPoint, &nroots, NULL, NULL, NULL)); 1699bfb0467fSMichael Lange if (nroots >= 0) { 1700b9f40539SMichael Lange IS isOriginal; 1701ac04eaf7SToby Isaac PetscInt n, size, nleaves; 1702ac04eaf7SToby Isaac PetscInt *numbering_orig, *numbering_new; 1703367003a6SStefano Zampini 1704b9f40539SMichael Lange /* Get the original point numbering */ 17059566063dSJacob Faibussowitsch PetscCall(DMPlexCreatePointNumbering(dm, &isOriginal)); 17069566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingCreateIS(isOriginal, <ogOriginal)); 17079566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingGetSize(ltogOriginal, &size)); 17089566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingGetBlockIndices(ltogOriginal, (const PetscInt **)&numbering_orig)); 1709b9f40539SMichael Lange /* Convert to positive global numbers */ 17109371c9d4SSatish Balay for (n = 0; n < size; n++) { 17119371c9d4SSatish Balay if (numbering_orig[n] < 0) numbering_orig[n] = -(numbering_orig[n] + 1); 17129371c9d4SSatish Balay } 1713b9f40539SMichael Lange /* Derive the new local-to-global mapping from the old one */ 17149566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(sf, NULL, &nleaves, NULL, NULL)); 17159566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nleaves, &numbering_new)); 17169566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(sf, MPIU_INT, numbering_orig, numbering_new, MPI_REPLACE)); 17179566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(sf, MPIU_INT, numbering_orig, numbering_new, MPI_REPLACE)); 17189566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingCreate(comm, 1, nleaves, numbering_new, PETSC_OWN_POINTER, <ogMigration)); 17199566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingRestoreIndices(ltogOriginal, (const PetscInt **)&numbering_orig)); 17209566063dSJacob Faibussowitsch PetscCall(ISDestroy(&isOriginal)); 172115078cd4SMichael Lange } else { 1722bfb0467fSMichael Lange /* One-to-all distribution pattern: We can derive LToG from SF */ 17239566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingCreateSF(sf, 0, <ogMigration)); 172415078cd4SMichael Lange } 1725a5a902f7SVaclav Hapla PetscCall(PetscObjectSetName((PetscObject)ltogMigration, "Point renumbering for DM migration")); 1726a5a902f7SVaclav Hapla PetscCall(ISLocalToGlobalMappingViewFromOptions(ltogMigration, (PetscObject)dm, "-partition_view")); 172715078cd4SMichael Lange /* Migrate DM data to target DM */ 17289566063dSJacob Faibussowitsch PetscCall(DMPlexDistributeCones(dm, sf, ltogOriginal, ltogMigration, targetDM)); 17299566063dSJacob Faibussowitsch PetscCall(DMPlexDistributeLabels(dm, sf, targetDM)); 17309566063dSJacob Faibussowitsch PetscCall(DMPlexDistributeCoordinates(dm, sf, targetDM)); 17319566063dSJacob Faibussowitsch PetscCall(DMPlexDistributeSetupTree(dm, sf, ltogOriginal, ltogMigration, targetDM)); 17329566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingDestroy(<ogOriginal)); 17339566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingDestroy(<ogMigration)); 17349566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DMPLEX_Migrate, dm, 0, 0, 0)); 173515078cd4SMichael Lange PetscFunctionReturn(0); 173615078cd4SMichael Lange } 173715078cd4SMichael Lange 17383b8f15a2SMatthew G. Knepley /*@C 173970034214SMatthew G. Knepley DMPlexDistribute - Distributes the mesh and any associated sections. 174070034214SMatthew G. Knepley 1741d083f849SBarry Smith Collective on dm 174270034214SMatthew G. Knepley 1743064ec1f3Sprj- Input Parameters: 174470034214SMatthew G. Knepley + dm - The original DMPlex object 174570034214SMatthew G. Knepley - overlap - The overlap of partitions, 0 is the default 174670034214SMatthew G. Knepley 1747064ec1f3Sprj- Output Parameters: 1748f4ae5380SJed Brown + sf - The PetscSF used for point distribution, or NULL if not needed 1749f4ae5380SJed Brown - dmParallel - The distributed DMPlex object 175070034214SMatthew G. Knepley 1751f4ae5380SJed Brown Note: If the mesh was not distributed, the output dmParallel will be NULL. 175270034214SMatthew G. Knepley 1753b0441da4SMatthew G. Knepley The user can control the definition of adjacency for the mesh using DMSetAdjacency(). They should choose the combination appropriate for the function 175470034214SMatthew G. Knepley representation on the mesh. 175570034214SMatthew G. Knepley 175670034214SMatthew G. Knepley Level: intermediate 175770034214SMatthew G. Knepley 1758db781477SPatrick Sanan .seealso: `DMPlexCreate()`, `DMSetAdjacency()`, `DMPlexGetOverlap()` 175970034214SMatthew G. Knepley @*/ 17609371c9d4SSatish Balay PetscErrorCode DMPlexDistribute(DM dm, PetscInt overlap, PetscSF *sf, DM *dmParallel) { 176170034214SMatthew G. Knepley MPI_Comm comm; 176215078cd4SMichael Lange PetscPartitioner partitioner; 1763f8987ae8SMichael Lange IS cellPart; 1764f8987ae8SMichael Lange PetscSection cellPartSection; 1765cf86098cSMatthew G. Knepley DM dmCoord; 1766f8987ae8SMichael Lange DMLabel lblPartition, lblMigration; 1767874ddda9SLisandro Dalcin PetscSF sfMigration, sfStratified, sfPoint; 176898ba2d7fSLawrence Mitchell PetscBool flg, balance; 1769874ddda9SLisandro Dalcin PetscMPIInt rank, size; 177070034214SMatthew G. Knepley 177170034214SMatthew G. Knepley PetscFunctionBegin; 177270034214SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 1773d5c515a1SMatthew G. Knepley PetscValidLogicalCollectiveInt(dm, overlap, 2); 1774d5c515a1SMatthew G. Knepley if (sf) PetscValidPointer(sf, 3); 1775d5c515a1SMatthew G. Knepley PetscValidPointer(dmParallel, 4); 177670034214SMatthew G. Knepley 17770c86c063SLisandro Dalcin if (sf) *sf = NULL; 17780c86c063SLisandro Dalcin *dmParallel = NULL; 17799566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)dm, &comm)); 17809566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 17819566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 17820c86c063SLisandro Dalcin if (size == 1) PetscFunctionReturn(0); 178370034214SMatthew G. Knepley 17849566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DMPLEX_Distribute, dm, 0, 0, 0)); 178515078cd4SMichael Lange /* Create cell partition */ 17869566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DMPLEX_Partition, dm, 0, 0, 0)); 17879566063dSJacob Faibussowitsch PetscCall(PetscSectionCreate(comm, &cellPartSection)); 17889566063dSJacob Faibussowitsch PetscCall(DMPlexGetPartitioner(dm, &partitioner)); 17899566063dSJacob Faibussowitsch PetscCall(PetscPartitionerDMPlexPartition(partitioner, dm, NULL, cellPartSection, &cellPart)); 17909566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DMPLEX_PartSelf, dm, 0, 0, 0)); 1791f8987ae8SMichael Lange { 1792f8987ae8SMichael Lange /* Convert partition to DMLabel */ 1793825f8a23SLisandro Dalcin IS is; 1794825f8a23SLisandro Dalcin PetscHSetI ht; 1795f8987ae8SMichael Lange const PetscInt *points; 17968e330a33SStefano Zampini PetscInt *iranks; 17978e330a33SStefano Zampini PetscInt pStart, pEnd, proc, npoints, poff = 0, nranks; 1798825f8a23SLisandro Dalcin 17999566063dSJacob Faibussowitsch PetscCall(DMLabelCreate(PETSC_COMM_SELF, "Point Partition", &lblPartition)); 1800825f8a23SLisandro Dalcin /* Preallocate strata */ 18019566063dSJacob Faibussowitsch PetscCall(PetscHSetICreate(&ht)); 18029566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(cellPartSection, &pStart, &pEnd)); 1803825f8a23SLisandro Dalcin for (proc = pStart; proc < pEnd; proc++) { 18049566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(cellPartSection, proc, &npoints)); 18059566063dSJacob Faibussowitsch if (npoints) PetscCall(PetscHSetIAdd(ht, proc)); 1806825f8a23SLisandro Dalcin } 18079566063dSJacob Faibussowitsch PetscCall(PetscHSetIGetSize(ht, &nranks)); 18089566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nranks, &iranks)); 18099566063dSJacob Faibussowitsch PetscCall(PetscHSetIGetElems(ht, &poff, iranks)); 18109566063dSJacob Faibussowitsch PetscCall(PetscHSetIDestroy(&ht)); 18119566063dSJacob Faibussowitsch PetscCall(DMLabelAddStrata(lblPartition, nranks, iranks)); 18129566063dSJacob Faibussowitsch PetscCall(PetscFree(iranks)); 1813825f8a23SLisandro Dalcin /* Inline DMPlexPartitionLabelClosure() */ 18149566063dSJacob Faibussowitsch PetscCall(ISGetIndices(cellPart, &points)); 18159566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(cellPartSection, &pStart, &pEnd)); 1816f8987ae8SMichael Lange for (proc = pStart; proc < pEnd; proc++) { 18179566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(cellPartSection, proc, &npoints)); 1818825f8a23SLisandro Dalcin if (!npoints) continue; 18199566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(cellPartSection, proc, &poff)); 18209566063dSJacob Faibussowitsch PetscCall(DMPlexClosurePoints_Private(dm, npoints, points + poff, &is)); 18219566063dSJacob Faibussowitsch PetscCall(DMLabelSetStratumIS(lblPartition, proc, is)); 18229566063dSJacob Faibussowitsch PetscCall(ISDestroy(&is)); 1823f8987ae8SMichael Lange } 18249566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(cellPart, &points)); 1825f8987ae8SMichael Lange } 18269566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DMPLEX_PartSelf, dm, 0, 0, 0)); 18276e203dd9SStefano Zampini 18289566063dSJacob Faibussowitsch PetscCall(DMLabelCreate(PETSC_COMM_SELF, "Point migration", &lblMigration)); 18299566063dSJacob Faibussowitsch PetscCall(DMPlexPartitionLabelInvert(dm, lblPartition, NULL, lblMigration)); 18309566063dSJacob Faibussowitsch PetscCall(DMPlexPartitionLabelCreateSF(dm, lblMigration, &sfMigration)); 18319566063dSJacob Faibussowitsch PetscCall(DMPlexStratifyMigrationSF(dm, sfMigration, &sfStratified)); 18329566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sfMigration)); 183343f7d02bSMichael Lange sfMigration = sfStratified; 18349566063dSJacob Faibussowitsch PetscCall(PetscSFSetUp(sfMigration)); 18359566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DMPLEX_Partition, dm, 0, 0, 0)); 18369566063dSJacob Faibussowitsch PetscCall(PetscOptionsHasName(((PetscObject)dm)->options, ((PetscObject)dm)->prefix, "-partition_view", &flg)); 183770034214SMatthew G. Knepley if (flg) { 18389566063dSJacob Faibussowitsch PetscCall(DMLabelView(lblPartition, PETSC_VIEWER_STDOUT_(comm))); 18399566063dSJacob Faibussowitsch PetscCall(PetscSFView(sfMigration, PETSC_VIEWER_STDOUT_(comm))); 184070034214SMatthew G. Knepley } 1841f8987ae8SMichael Lange 184215078cd4SMichael Lange /* Create non-overlapping parallel DM and migrate internal data */ 18439566063dSJacob Faibussowitsch PetscCall(DMPlexCreate(comm, dmParallel)); 18449566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)*dmParallel, "Parallel Mesh")); 18459566063dSJacob Faibussowitsch PetscCall(DMPlexMigrate(dm, sfMigration, *dmParallel)); 184670034214SMatthew G. Knepley 1847a157612eSMichael Lange /* Build the point SF without overlap */ 18489566063dSJacob Faibussowitsch PetscCall(DMPlexGetPartitionBalance(dm, &balance)); 18499566063dSJacob Faibussowitsch PetscCall(DMPlexSetPartitionBalance(*dmParallel, balance)); 18509566063dSJacob Faibussowitsch PetscCall(DMPlexCreatePointSF(*dmParallel, sfMigration, PETSC_TRUE, &sfPoint)); 18519566063dSJacob Faibussowitsch PetscCall(DMSetPointSF(*dmParallel, sfPoint)); 18529566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDM(*dmParallel, &dmCoord)); 18539566063dSJacob Faibussowitsch if (dmCoord) PetscCall(DMSetPointSF(dmCoord, sfPoint)); 18549566063dSJacob Faibussowitsch if (flg) PetscCall(PetscSFView(sfPoint, NULL)); 185570034214SMatthew G. Knepley 1856a157612eSMichael Lange if (overlap > 0) { 185715078cd4SMichael Lange DM dmOverlap; 185857f290daSMatthew G. Knepley PetscInt nroots, nleaves, noldleaves, l; 185957f290daSMatthew G. Knepley const PetscInt *oldLeaves; 186057f290daSMatthew G. Knepley PetscSFNode *newRemote, *permRemote; 186115078cd4SMichael Lange const PetscSFNode *oldRemote; 186215078cd4SMichael Lange PetscSF sfOverlap, sfOverlapPoint; 1863524e35f8SStefano Zampini 1864a157612eSMichael Lange /* Add the partition overlap to the distributed DM */ 18659566063dSJacob Faibussowitsch PetscCall(DMPlexDistributeOverlap(*dmParallel, overlap, &sfOverlap, &dmOverlap)); 18669566063dSJacob Faibussowitsch PetscCall(DMDestroy(dmParallel)); 1867a157612eSMichael Lange *dmParallel = dmOverlap; 1868c389ea9fSToby Isaac if (flg) { 18699566063dSJacob Faibussowitsch PetscCall(PetscPrintf(comm, "Overlap Migration SF:\n")); 18709566063dSJacob Faibussowitsch PetscCall(PetscSFView(sfOverlap, NULL)); 1871c389ea9fSToby Isaac } 187243331d4aSMichael Lange 1873f8987ae8SMichael Lange /* Re-map the migration SF to establish the full migration pattern */ 18749566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(sfMigration, &nroots, &noldleaves, &oldLeaves, &oldRemote)); 18759566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(sfOverlap, NULL, &nleaves, NULL, NULL)); 18769566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nleaves, &newRemote)); 187757f290daSMatthew G. Knepley /* oldRemote: original root point mapping to original leaf point 187857f290daSMatthew G. Knepley newRemote: original leaf point mapping to overlapped leaf point */ 187957f290daSMatthew G. Knepley if (oldLeaves) { 188073e69a6aSMatthew G. Knepley /* After stratification, the migration remotes may not be in root (canonical) order, so we reorder using the leaf numbering */ 18819566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(noldleaves, &permRemote)); 188257f290daSMatthew G. Knepley for (l = 0; l < noldleaves; ++l) permRemote[oldLeaves[l]] = oldRemote[l]; 188357f290daSMatthew G. Knepley oldRemote = permRemote; 188457f290daSMatthew G. Knepley } 18859566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(sfOverlap, MPIU_2INT, oldRemote, newRemote, MPI_REPLACE)); 18869566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(sfOverlap, MPIU_2INT, oldRemote, newRemote, MPI_REPLACE)); 18879566063dSJacob Faibussowitsch if (oldLeaves) PetscCall(PetscFree(oldRemote)); 18889566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(comm, &sfOverlapPoint)); 18899566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(sfOverlapPoint, nroots, nleaves, NULL, PETSC_OWN_POINTER, newRemote, PETSC_OWN_POINTER)); 18909566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sfOverlap)); 18919566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sfMigration)); 189215078cd4SMichael Lange sfMigration = sfOverlapPoint; 1893c389ea9fSToby Isaac } 1894bf5244c7SMatthew G. Knepley /* Cleanup Partition */ 18959566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&lblPartition)); 18969566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&lblMigration)); 18979566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&cellPartSection)); 18989566063dSJacob Faibussowitsch PetscCall(ISDestroy(&cellPart)); 189945480ffeSMatthew G. Knepley /* Copy discretization */ 19009566063dSJacob Faibussowitsch PetscCall(DMCopyDisc(dm, *dmParallel)); 190166fe0bfeSMatthew G. Knepley /* Create sfNatural */ 190266fe0bfeSMatthew G. Knepley if (dm->useNatural) { 190366fe0bfeSMatthew G. Knepley PetscSection section; 190466fe0bfeSMatthew G. Knepley 1905*fc6a3818SBlaise Bourdin PetscCall(DMSetUseNatural(*dmParallel, PETSC_TRUE)); 1906*fc6a3818SBlaise Bourdin PetscCall(DMGetLocalSection(dm, §ion)); 1907*fc6a3818SBlaise Bourdin 19088aee0f92SAlexis Marboeuf /* First DM with useNatural = PETSC_TRUE is considered natural */ 19098aee0f92SAlexis Marboeuf /* sfMigration and sfNatural are respectively the point and dofs SFs mapping to this natural DM */ 1910*fc6a3818SBlaise Bourdin /* Compose with a previous sfNatural if present */ 1911*fc6a3818SBlaise Bourdin if (dm->sfNatural) { 1912*fc6a3818SBlaise Bourdin PetscSF natSF; 1913*fc6a3818SBlaise Bourdin 1914*fc6a3818SBlaise Bourdin PetscCall(DMPlexCreateGlobalToNaturalSF(*dmParallel, section, sfMigration, &natSF)); 1915*fc6a3818SBlaise Bourdin PetscCall(PetscSFCompose(dm->sfNatural, natSF, &(*dmParallel)->sfNatural)); 1916*fc6a3818SBlaise Bourdin PetscCall(PetscSFDestroy(&natSF)); 1917*fc6a3818SBlaise Bourdin } else { 1918*fc6a3818SBlaise Bourdin PetscCall(DMPlexCreateGlobalToNaturalSF(*dmParallel, section, sfMigration, &(*dmParallel)->sfNatural)); 1919*fc6a3818SBlaise Bourdin } 19208aee0f92SAlexis Marboeuf /* Compose with a previous sfMigration if present */ 19218aee0f92SAlexis Marboeuf if (dm->sfMigration) { 19228aee0f92SAlexis Marboeuf PetscSF naturalPointSF; 19238aee0f92SAlexis Marboeuf 19248aee0f92SAlexis Marboeuf PetscCall(PetscSFCompose(dm->sfMigration, sfMigration, &naturalPointSF)); 19258aee0f92SAlexis Marboeuf PetscCall(PetscSFDestroy(&sfMigration)); 19268aee0f92SAlexis Marboeuf sfMigration = naturalPointSF; 19278aee0f92SAlexis Marboeuf } 192866fe0bfeSMatthew G. Knepley } 19295de52c6dSVaclav Hapla PetscCall(DMPlexCopy_Internal(dm, PETSC_TRUE, PETSC_FALSE, *dmParallel)); 1930721cbd76SMatthew G. Knepley /* Cleanup */ 19319371c9d4SSatish Balay if (sf) { 19329371c9d4SSatish Balay *sf = sfMigration; 19339371c9d4SSatish Balay } else PetscCall(PetscSFDestroy(&sfMigration)); 19349566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sfPoint)); 19359566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DMPLEX_Distribute, dm, 0, 0, 0)); 193670034214SMatthew G. Knepley PetscFunctionReturn(0); 193770034214SMatthew G. Knepley } 1938a157612eSMichael Lange 1939a157612eSMichael Lange /*@C 194024cc2ca5SMatthew G. Knepley DMPlexDistributeOverlap - Add partition overlap to a distributed non-overlapping DM. 1941a157612eSMichael Lange 1942d083f849SBarry Smith Collective on dm 1943a157612eSMichael Lange 1944064ec1f3Sprj- Input Parameters: 1945064ec1f3Sprj- + dm - The non-overlapping distributed DMPlex object 194657fe9a49SVaclav Hapla - overlap - The overlap of partitions (the same on all ranks) 1947a157612eSMichael Lange 1948064ec1f3Sprj- Output Parameters: 1949a157612eSMichael Lange + sf - The PetscSF used for point distribution 1950a157612eSMichael Lange - dmOverlap - The overlapping distributed DMPlex object, or NULL 1951a157612eSMichael Lange 1952dccdeccaSVaclav Hapla Notes: 1953dccdeccaSVaclav Hapla If the mesh was not distributed, the return value is NULL. 1954a157612eSMichael Lange 1955b0441da4SMatthew G. Knepley The user can control the definition of adjacency for the mesh using DMSetAdjacency(). They should choose the combination appropriate for the function 1956a157612eSMichael Lange representation on the mesh. 1957a157612eSMichael Lange 1958c506a872SMatthew G. Knepley Options Database Keys: 1959c506a872SMatthew G. Knepley + -dm_plex_overlap_labels <name1,name2,...> - List of overlap label names 1960c506a872SMatthew G. Knepley . -dm_plex_overlap_values <int1,int2,...> - List of overlap label values 1961c506a872SMatthew G. Knepley . -dm_plex_overlap_exclude_label <name> - Label used to exclude points from overlap 1962c506a872SMatthew G. Knepley - -dm_plex_overlap_exclude_value <int> - Label value used to exclude points from overlap 1963c506a872SMatthew G. Knepley 1964dccdeccaSVaclav Hapla Level: advanced 1965a157612eSMichael Lange 1966db781477SPatrick Sanan .seealso: `DMPlexCreate()`, `DMSetAdjacency()`, `DMPlexDistribute()`, `DMPlexCreateOverlapLabel()`, `DMPlexGetOverlap()` 1967a157612eSMichael Lange @*/ 19689371c9d4SSatish Balay PetscErrorCode DMPlexDistributeOverlap(DM dm, PetscInt overlap, PetscSF *sf, DM *dmOverlap) { 1969c506a872SMatthew G. Knepley DM_Plex *mesh = (DM_Plex *)dm->data; 1970a157612eSMichael Lange MPI_Comm comm; 19713567eaeeSMatthew G. Knepley PetscMPIInt size, rank; 1972a157612eSMichael Lange PetscSection rootSection, leafSection; 1973a157612eSMichael Lange IS rootrank, leafrank; 1974cf86098cSMatthew G. Knepley DM dmCoord; 1975a9f1d5b2SMichael Lange DMLabel lblOverlap; 1976f5bf2dbfSMichael Lange PetscSF sfOverlap, sfStratified, sfPoint; 1977a157612eSMichael Lange 1978a157612eSMichael Lange PetscFunctionBegin; 1979a157612eSMichael Lange PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 198057fe9a49SVaclav Hapla PetscValidLogicalCollectiveInt(dm, overlap, 2); 1981a157612eSMichael Lange if (sf) PetscValidPointer(sf, 3); 1982a157612eSMichael Lange PetscValidPointer(dmOverlap, 4); 1983a157612eSMichael Lange 19840c86c063SLisandro Dalcin if (sf) *sf = NULL; 19850c86c063SLisandro Dalcin *dmOverlap = NULL; 19869566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)dm, &comm)); 19879566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 19889566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 19890c86c063SLisandro Dalcin if (size == 1) PetscFunctionReturn(0); 1990c506a872SMatthew G. Knepley { 1991c506a872SMatthew G. Knepley // We need to get options for the _already_distributed mesh, so it must be done here 1992c506a872SMatthew G. Knepley PetscInt overlap; 1993c506a872SMatthew G. Knepley const char *prefix; 1994c506a872SMatthew G. Knepley char oldPrefix[PETSC_MAX_PATH_LEN]; 1995a157612eSMichael Lange 1996c506a872SMatthew G. Knepley oldPrefix[0] = '\0'; 1997c506a872SMatthew G. Knepley PetscCall(PetscObjectGetOptionsPrefix((PetscObject)dm, &prefix)); 1998c506a872SMatthew G. Knepley PetscCall(PetscStrcpy(oldPrefix, prefix)); 1999c506a872SMatthew G. Knepley PetscCall(PetscObjectAppendOptionsPrefix((PetscObject)dm, "dist_")); 2000c506a872SMatthew G. Knepley PetscCall(DMPlexGetOverlap(dm, &overlap)); 2001c506a872SMatthew G. Knepley PetscObjectOptionsBegin((PetscObject)dm); 2002dbbe0bcdSBarry Smith PetscCall(DMSetFromOptions_Overlap_Plex(dm, PetscOptionsObject, &overlap)); 2003c506a872SMatthew G. Knepley PetscOptionsEnd(); 2004c506a872SMatthew G. Knepley PetscCall(PetscObjectSetOptionsPrefix((PetscObject)dm, oldPrefix[0] == '\0' ? NULL : oldPrefix)); 2005c506a872SMatthew G. Knepley } 20069566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DMPLEX_DistributeOverlap, dm, 0, 0, 0)); 2007a157612eSMichael Lange /* Compute point overlap with neighbouring processes on the distributed DM */ 20089566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DMPLEX_Partition, dm, 0, 0, 0)); 20099566063dSJacob Faibussowitsch PetscCall(PetscSectionCreate(comm, &rootSection)); 20109566063dSJacob Faibussowitsch PetscCall(PetscSectionCreate(comm, &leafSection)); 20119566063dSJacob Faibussowitsch PetscCall(DMPlexDistributeOwnership(dm, rootSection, &rootrank, leafSection, &leafrank)); 2012c506a872SMatthew G. Knepley if (mesh->numOvLabels) PetscCall(DMPlexCreateOverlapLabelFromLabels(dm, mesh->numOvLabels, mesh->ovLabels, mesh->ovValues, mesh->numOvExLabels, mesh->ovExLabels, mesh->ovExValues, rootSection, rootrank, leafSection, leafrank, &lblOverlap)); 2013c506a872SMatthew G. Knepley else PetscCall(DMPlexCreateOverlapLabel(dm, overlap, rootSection, rootrank, leafSection, leafrank, &lblOverlap)); 2014a9f1d5b2SMichael Lange /* Convert overlap label to stratified migration SF */ 20159566063dSJacob Faibussowitsch PetscCall(DMPlexPartitionLabelCreateSF(dm, lblOverlap, &sfOverlap)); 20169566063dSJacob Faibussowitsch PetscCall(DMPlexStratifyMigrationSF(dm, sfOverlap, &sfStratified)); 20179566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sfOverlap)); 2018a9f1d5b2SMichael Lange sfOverlap = sfStratified; 20199566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)sfOverlap, "Overlap SF")); 20209566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions(sfOverlap)); 2021a9f1d5b2SMichael Lange 20229566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&rootSection)); 20239566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&leafSection)); 20249566063dSJacob Faibussowitsch PetscCall(ISDestroy(&rootrank)); 20259566063dSJacob Faibussowitsch PetscCall(ISDestroy(&leafrank)); 20269566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DMPLEX_Partition, dm, 0, 0, 0)); 2027a157612eSMichael Lange 2028a157612eSMichael Lange /* Build the overlapping DM */ 20299566063dSJacob Faibussowitsch PetscCall(DMPlexCreate(comm, dmOverlap)); 20309566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)*dmOverlap, "Parallel Mesh")); 20319566063dSJacob Faibussowitsch PetscCall(DMPlexMigrate(dm, sfOverlap, *dmOverlap)); 2032cb54e036SVaclav Hapla /* Store the overlap in the new DM */ 203360667520SVaclav Hapla PetscCall(DMPlexSetOverlap_Plex(*dmOverlap, dm, overlap)); 2034f5bf2dbfSMichael Lange /* Build the new point SF */ 20359566063dSJacob Faibussowitsch PetscCall(DMPlexCreatePointSF(*dmOverlap, sfOverlap, PETSC_FALSE, &sfPoint)); 20369566063dSJacob Faibussowitsch PetscCall(DMSetPointSF(*dmOverlap, sfPoint)); 20379566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDM(*dmOverlap, &dmCoord)); 20389566063dSJacob Faibussowitsch if (dmCoord) PetscCall(DMSetPointSF(dmCoord, sfPoint)); 20396858538eSMatthew G. Knepley PetscCall(DMGetCellCoordinateDM(*dmOverlap, &dmCoord)); 20406858538eSMatthew G. Knepley if (dmCoord) PetscCall(DMSetPointSF(dmCoord, sfPoint)); 20419566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sfPoint)); 2042a157612eSMichael Lange /* Cleanup overlap partition */ 20439566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&lblOverlap)); 2044a9f1d5b2SMichael Lange if (sf) *sf = sfOverlap; 20459566063dSJacob Faibussowitsch else PetscCall(PetscSFDestroy(&sfOverlap)); 20469566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DMPLEX_DistributeOverlap, dm, 0, 0, 0)); 2047a157612eSMichael Lange PetscFunctionReturn(0); 2048a157612eSMichael Lange } 20496462276dSToby Isaac 20509371c9d4SSatish Balay PetscErrorCode DMPlexGetOverlap_Plex(DM dm, PetscInt *overlap) { 2051cb54e036SVaclav Hapla DM_Plex *mesh = (DM_Plex *)dm->data; 2052cb54e036SVaclav Hapla 2053cb54e036SVaclav Hapla PetscFunctionBegin; 2054cb54e036SVaclav Hapla *overlap = mesh->overlap; 2055cb54e036SVaclav Hapla PetscFunctionReturn(0); 2056cb54e036SVaclav Hapla } 2057cb54e036SVaclav Hapla 20589371c9d4SSatish Balay PetscErrorCode DMPlexSetOverlap_Plex(DM dm, DM dmSrc, PetscInt overlap) { 205960667520SVaclav Hapla DM_Plex *mesh = NULL; 206060667520SVaclav Hapla DM_Plex *meshSrc = NULL; 206160667520SVaclav Hapla 206260667520SVaclav Hapla PetscFunctionBegin; 206360667520SVaclav Hapla PetscValidHeaderSpecificType(dm, DM_CLASSID, 1, DMPLEX); 206460667520SVaclav Hapla mesh = (DM_Plex *)dm->data; 206560667520SVaclav Hapla mesh->overlap = overlap; 206660667520SVaclav Hapla if (dmSrc) { 206760667520SVaclav Hapla PetscValidHeaderSpecificType(dmSrc, DM_CLASSID, 2, DMPLEX); 206860667520SVaclav Hapla meshSrc = (DM_Plex *)dmSrc->data; 206960667520SVaclav Hapla mesh->overlap += meshSrc->overlap; 207060667520SVaclav Hapla } 207160667520SVaclav Hapla PetscFunctionReturn(0); 207260667520SVaclav Hapla } 207360667520SVaclav Hapla 2074cb54e036SVaclav Hapla /*@ 2075c506a872SMatthew G. Knepley DMPlexGetOverlap - Get the width of the cell overlap 2076cb54e036SVaclav Hapla 2077cb54e036SVaclav Hapla Not collective 2078cb54e036SVaclav Hapla 2079cb54e036SVaclav Hapla Input Parameter: 2080cb54e036SVaclav Hapla . dm - The DM 2081cb54e036SVaclav Hapla 2082064ec1f3Sprj- Output Parameter: 2083c506a872SMatthew G. Knepley . overlap - the width of the cell overlap 2084cb54e036SVaclav Hapla 2085cb54e036SVaclav Hapla Level: intermediate 2086cb54e036SVaclav Hapla 2087c506a872SMatthew G. Knepley .seealso: `DMPlexSetOverlap()`, `DMPlexDistribute()` 2088cb54e036SVaclav Hapla @*/ 20899371c9d4SSatish Balay PetscErrorCode DMPlexGetOverlap(DM dm, PetscInt *overlap) { 2090cb54e036SVaclav Hapla PetscFunctionBegin; 2091cb54e036SVaclav Hapla PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 2092c506a872SMatthew G. Knepley PetscValidIntPointer(overlap, 2); 2093cac4c232SBarry Smith PetscUseMethod(dm, "DMPlexGetOverlap_C", (DM, PetscInt *), (dm, overlap)); 2094cb54e036SVaclav Hapla PetscFunctionReturn(0); 2095cb54e036SVaclav Hapla } 2096cb54e036SVaclav Hapla 2097c506a872SMatthew G. Knepley /*@ 2098c506a872SMatthew G. Knepley DMPlexSetOverlap - Set the width of the cell overlap 2099c506a872SMatthew G. Knepley 2100c506a872SMatthew G. Knepley Logically collective 2101c506a872SMatthew G. Knepley 2102c506a872SMatthew G. Knepley Input Parameters: 2103c506a872SMatthew G. Knepley + dm - The DM 2104c506a872SMatthew G. Knepley . dmSrc - The DM that produced this one, or NULL 2105c506a872SMatthew G. Knepley - overlap - the width of the cell overlap 2106c506a872SMatthew G. Knepley 2107c506a872SMatthew G. Knepley Note: 2108c506a872SMatthew G. Knepley The overlap from dmSrc is added to dm 2109c506a872SMatthew G. Knepley 2110c506a872SMatthew G. Knepley Level: intermediate 2111c506a872SMatthew G. Knepley 2112c506a872SMatthew G. Knepley .seealso: `DMPlexGetOverlap()`, `DMPlexDistribute()` 2113c506a872SMatthew G. Knepley @*/ 21149371c9d4SSatish Balay PetscErrorCode DMPlexSetOverlap(DM dm, DM dmSrc, PetscInt overlap) { 2115c506a872SMatthew G. Knepley PetscFunctionBegin; 2116c506a872SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 2117c506a872SMatthew G. Knepley PetscValidLogicalCollectiveInt(dm, overlap, 3); 2118c506a872SMatthew G. Knepley PetscTryMethod(dm, "DMPlexSetOverlap_C", (DM, DM, PetscInt), (dm, dmSrc, overlap)); 2119c506a872SMatthew G. Knepley PetscFunctionReturn(0); 2120c506a872SMatthew G. Knepley } 2121c506a872SMatthew G. Knepley 21229371c9d4SSatish Balay PetscErrorCode DMPlexDistributeSetDefault_Plex(DM dm, PetscBool dist) { 2123e600fa54SMatthew G. Knepley DM_Plex *mesh = (DM_Plex *)dm->data; 2124e600fa54SMatthew G. Knepley 2125e600fa54SMatthew G. Knepley PetscFunctionBegin; 2126e600fa54SMatthew G. Knepley mesh->distDefault = dist; 2127e600fa54SMatthew G. Knepley PetscFunctionReturn(0); 2128e600fa54SMatthew G. Knepley } 2129e600fa54SMatthew G. Knepley 2130e600fa54SMatthew G. Knepley /*@ 2131e600fa54SMatthew G. Knepley DMPlexDistributeSetDefault - Set flag indicating whether the DM should be distributed by default 2132e600fa54SMatthew G. Knepley 2133e600fa54SMatthew G. Knepley Logically collective 2134e600fa54SMatthew G. Knepley 2135e600fa54SMatthew G. Knepley Input Parameters: 2136e600fa54SMatthew G. Knepley + dm - The DM 2137e600fa54SMatthew G. Knepley - dist - Flag for distribution 2138e600fa54SMatthew G. Knepley 2139e600fa54SMatthew G. Knepley Level: intermediate 2140e600fa54SMatthew G. Knepley 21419e70506fSSatish Balay .seealso: `DMPlexDistributeGetDefault()`, `DMPlexDistribute()` 2142e600fa54SMatthew G. Knepley @*/ 21439371c9d4SSatish Balay PetscErrorCode DMPlexDistributeSetDefault(DM dm, PetscBool dist) { 2144e600fa54SMatthew G. Knepley PetscFunctionBegin; 2145e600fa54SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 2146e600fa54SMatthew G. Knepley PetscValidLogicalCollectiveBool(dm, dist, 2); 2147cac4c232SBarry Smith PetscTryMethod(dm, "DMPlexDistributeSetDefault_C", (DM, PetscBool), (dm, dist)); 2148e600fa54SMatthew G. Knepley PetscFunctionReturn(0); 2149e600fa54SMatthew G. Knepley } 2150e600fa54SMatthew G. Knepley 21519371c9d4SSatish Balay PetscErrorCode DMPlexDistributeGetDefault_Plex(DM dm, PetscBool *dist) { 2152e600fa54SMatthew G. Knepley DM_Plex *mesh = (DM_Plex *)dm->data; 2153e600fa54SMatthew G. Knepley 2154e600fa54SMatthew G. Knepley PetscFunctionBegin; 2155e600fa54SMatthew G. Knepley *dist = mesh->distDefault; 2156e600fa54SMatthew G. Knepley PetscFunctionReturn(0); 2157e600fa54SMatthew G. Knepley } 2158e600fa54SMatthew G. Knepley 2159e600fa54SMatthew G. Knepley /*@ 2160e600fa54SMatthew G. Knepley DMPlexDistributeGetDefault - Get flag indicating whether the DM should be distributed by default 2161e600fa54SMatthew G. Knepley 2162e600fa54SMatthew G. Knepley Not collective 2163e600fa54SMatthew G. Knepley 2164e600fa54SMatthew G. Knepley Input Parameter: 2165e600fa54SMatthew G. Knepley . dm - The DM 2166e600fa54SMatthew G. Knepley 2167e600fa54SMatthew G. Knepley Output Parameter: 2168e600fa54SMatthew G. Knepley . dist - Flag for distribution 2169e600fa54SMatthew G. Knepley 2170e600fa54SMatthew G. Knepley Level: intermediate 2171e600fa54SMatthew G. Knepley 21729e70506fSSatish Balay .seealso: `DMPlexDistributeSetDefault()`, `DMPlexDistribute()` 2173e600fa54SMatthew G. Knepley @*/ 21749371c9d4SSatish Balay PetscErrorCode DMPlexDistributeGetDefault(DM dm, PetscBool *dist) { 2175e600fa54SMatthew G. Knepley PetscFunctionBegin; 2176e600fa54SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 2177e600fa54SMatthew G. Knepley PetscValidBoolPointer(dist, 2); 2178cac4c232SBarry Smith PetscUseMethod(dm, "DMPlexDistributeGetDefault_C", (DM, PetscBool *), (dm, dist)); 2179e600fa54SMatthew G. Knepley PetscFunctionReturn(0); 2180e600fa54SMatthew G. Knepley } 2181e600fa54SMatthew G. Knepley 21826462276dSToby Isaac /*@C 21836462276dSToby Isaac DMPlexGetGatherDM - Get a copy of the DMPlex that gathers all points on the 21846462276dSToby Isaac root process of the original's communicator. 21856462276dSToby Isaac 2186d083f849SBarry Smith Collective on dm 218783655b49SVáclav Hapla 2188064ec1f3Sprj- Input Parameter: 21896462276dSToby Isaac . dm - the original DMPlex object 21906462276dSToby Isaac 21916462276dSToby Isaac Output Parameters: 2192a13df41bSStefano Zampini + sf - the PetscSF used for point distribution (optional) 2193a13df41bSStefano Zampini - gatherMesh - the gathered DM object, or NULL 21946462276dSToby Isaac 21956462276dSToby Isaac Level: intermediate 21966462276dSToby Isaac 2197db781477SPatrick Sanan .seealso: `DMPlexDistribute()`, `DMPlexGetRedundantDM()` 21986462276dSToby Isaac @*/ 21999371c9d4SSatish Balay PetscErrorCode DMPlexGetGatherDM(DM dm, PetscSF *sf, DM *gatherMesh) { 22006462276dSToby Isaac MPI_Comm comm; 22016462276dSToby Isaac PetscMPIInt size; 22026462276dSToby Isaac PetscPartitioner oldPart, gatherPart; 22036462276dSToby Isaac 22046462276dSToby Isaac PetscFunctionBegin; 22056462276dSToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 2206064a246eSJacob Faibussowitsch PetscValidPointer(gatherMesh, 3); 22070c86c063SLisandro Dalcin *gatherMesh = NULL; 2208a13df41bSStefano Zampini if (sf) *sf = NULL; 22096462276dSToby Isaac comm = PetscObjectComm((PetscObject)dm); 22109566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 22116462276dSToby Isaac if (size == 1) PetscFunctionReturn(0); 22129566063dSJacob Faibussowitsch PetscCall(DMPlexGetPartitioner(dm, &oldPart)); 22139566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)oldPart)); 22149566063dSJacob Faibussowitsch PetscCall(PetscPartitionerCreate(comm, &gatherPart)); 22159566063dSJacob Faibussowitsch PetscCall(PetscPartitionerSetType(gatherPart, PETSCPARTITIONERGATHER)); 22169566063dSJacob Faibussowitsch PetscCall(DMPlexSetPartitioner(dm, gatherPart)); 22179566063dSJacob Faibussowitsch PetscCall(DMPlexDistribute(dm, 0, sf, gatherMesh)); 2218a13df41bSStefano Zampini 22199566063dSJacob Faibussowitsch PetscCall(DMPlexSetPartitioner(dm, oldPart)); 22209566063dSJacob Faibussowitsch PetscCall(PetscPartitionerDestroy(&gatherPart)); 22219566063dSJacob Faibussowitsch PetscCall(PetscPartitionerDestroy(&oldPart)); 22226462276dSToby Isaac PetscFunctionReturn(0); 22236462276dSToby Isaac } 22246462276dSToby Isaac 22256462276dSToby Isaac /*@C 22266462276dSToby Isaac DMPlexGetRedundantDM - Get a copy of the DMPlex that is completely copied on each process. 22276462276dSToby Isaac 2228d083f849SBarry Smith Collective on dm 222983655b49SVáclav Hapla 2230064ec1f3Sprj- Input Parameter: 22316462276dSToby Isaac . dm - the original DMPlex object 22326462276dSToby Isaac 22336462276dSToby Isaac Output Parameters: 2234a13df41bSStefano Zampini + sf - the PetscSF used for point distribution (optional) 2235a13df41bSStefano Zampini - redundantMesh - the redundant DM object, or NULL 22366462276dSToby Isaac 22376462276dSToby Isaac Level: intermediate 22386462276dSToby Isaac 2239db781477SPatrick Sanan .seealso: `DMPlexDistribute()`, `DMPlexGetGatherDM()` 22406462276dSToby Isaac @*/ 22419371c9d4SSatish Balay PetscErrorCode DMPlexGetRedundantDM(DM dm, PetscSF *sf, DM *redundantMesh) { 22426462276dSToby Isaac MPI_Comm comm; 22436462276dSToby Isaac PetscMPIInt size, rank; 22446462276dSToby Isaac PetscInt pStart, pEnd, p; 22456462276dSToby Isaac PetscInt numPoints = -1; 2246a13df41bSStefano Zampini PetscSF migrationSF, sfPoint, gatherSF; 22476462276dSToby Isaac DM gatherDM, dmCoord; 22486462276dSToby Isaac PetscSFNode *points; 22496462276dSToby Isaac 22506462276dSToby Isaac PetscFunctionBegin; 22516462276dSToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 2252064a246eSJacob Faibussowitsch PetscValidPointer(redundantMesh, 3); 22530c86c063SLisandro Dalcin *redundantMesh = NULL; 22546462276dSToby Isaac comm = PetscObjectComm((PetscObject)dm); 22559566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 225668dbc166SMatthew G. Knepley if (size == 1) { 22579566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)dm)); 225868dbc166SMatthew G. Knepley *redundantMesh = dm; 2259a13df41bSStefano Zampini if (sf) *sf = NULL; 226068dbc166SMatthew G. Knepley PetscFunctionReturn(0); 226168dbc166SMatthew G. Knepley } 22629566063dSJacob Faibussowitsch PetscCall(DMPlexGetGatherDM(dm, &gatherSF, &gatherDM)); 22636462276dSToby Isaac if (!gatherDM) PetscFunctionReturn(0); 22649566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 22659566063dSJacob Faibussowitsch PetscCall(DMPlexGetChart(gatherDM, &pStart, &pEnd)); 22666462276dSToby Isaac numPoints = pEnd - pStart; 22679566063dSJacob Faibussowitsch PetscCallMPI(MPI_Bcast(&numPoints, 1, MPIU_INT, 0, comm)); 22689566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(numPoints, &points)); 22699566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(comm, &migrationSF)); 22706462276dSToby Isaac for (p = 0; p < numPoints; p++) { 22716462276dSToby Isaac points[p].index = p; 22726462276dSToby Isaac points[p].rank = 0; 22736462276dSToby Isaac } 22749566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(migrationSF, pEnd - pStart, numPoints, NULL, PETSC_OWN_POINTER, points, PETSC_OWN_POINTER)); 22759566063dSJacob Faibussowitsch PetscCall(DMPlexCreate(comm, redundantMesh)); 22769566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)*redundantMesh, "Redundant Mesh")); 22779566063dSJacob Faibussowitsch PetscCall(DMPlexMigrate(gatherDM, migrationSF, *redundantMesh)); 22782e28cf0cSVaclav Hapla /* This is to express that all point are in overlap */ 22792e28cf0cSVaclav Hapla PetscCall(DMPlexSetOverlap_Plex(*redundantMesh, NULL, PETSC_MAX_INT)); 22809566063dSJacob Faibussowitsch PetscCall(DMPlexCreatePointSF(*redundantMesh, migrationSF, PETSC_FALSE, &sfPoint)); 22819566063dSJacob Faibussowitsch PetscCall(DMSetPointSF(*redundantMesh, sfPoint)); 22829566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDM(*redundantMesh, &dmCoord)); 22839566063dSJacob Faibussowitsch if (dmCoord) PetscCall(DMSetPointSF(dmCoord, sfPoint)); 22849566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sfPoint)); 2285a13df41bSStefano Zampini if (sf) { 2286a13df41bSStefano Zampini PetscSF tsf; 2287a13df41bSStefano Zampini 22889566063dSJacob Faibussowitsch PetscCall(PetscSFCompose(gatherSF, migrationSF, &tsf)); 22899566063dSJacob Faibussowitsch PetscCall(DMPlexStratifyMigrationSF(dm, tsf, sf)); 22909566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&tsf)); 2291a13df41bSStefano Zampini } 22929566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&migrationSF)); 22939566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&gatherSF)); 22949566063dSJacob Faibussowitsch PetscCall(DMDestroy(&gatherDM)); 22959566063dSJacob Faibussowitsch PetscCall(DMCopyDisc(dm, *redundantMesh)); 22965de52c6dSVaclav Hapla PetscCall(DMPlexCopy_Internal(dm, PETSC_TRUE, PETSC_FALSE, *redundantMesh)); 22976462276dSToby Isaac PetscFunctionReturn(0); 22986462276dSToby Isaac } 22995fa78c88SVaclav Hapla 23005fa78c88SVaclav Hapla /*@ 23015fa78c88SVaclav Hapla DMPlexIsDistributed - Find out whether this DM is distributed, i.e. more than one rank owns some points. 23025fa78c88SVaclav Hapla 23035fa78c88SVaclav Hapla Collective 23045fa78c88SVaclav Hapla 23055fa78c88SVaclav Hapla Input Parameter: 23065fa78c88SVaclav Hapla . dm - The DM object 23075fa78c88SVaclav Hapla 23085fa78c88SVaclav Hapla Output Parameter: 23095fa78c88SVaclav Hapla . distributed - Flag whether the DM is distributed 23105fa78c88SVaclav Hapla 23115fa78c88SVaclav Hapla Level: intermediate 23125fa78c88SVaclav Hapla 23135fa78c88SVaclav Hapla Notes: 23145fa78c88SVaclav Hapla This currently finds out whether at least two ranks have any DAG points. 23155fa78c88SVaclav Hapla This involves MPI_Allreduce() with one integer. 23165fa78c88SVaclav Hapla The result is currently not stashed so every call to this routine involves this global communication. 23175fa78c88SVaclav Hapla 2318db781477SPatrick Sanan .seealso: `DMPlexDistribute()`, `DMPlexGetOverlap()`, `DMPlexIsInterpolated()` 23195fa78c88SVaclav Hapla @*/ 23209371c9d4SSatish Balay PetscErrorCode DMPlexIsDistributed(DM dm, PetscBool *distributed) { 23215fa78c88SVaclav Hapla PetscInt pStart, pEnd, count; 23225fa78c88SVaclav Hapla MPI_Comm comm; 232335d70e31SStefano Zampini PetscMPIInt size; 23245fa78c88SVaclav Hapla 23255fa78c88SVaclav Hapla PetscFunctionBegin; 23265fa78c88SVaclav Hapla PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 2327dadcf809SJacob Faibussowitsch PetscValidBoolPointer(distributed, 2); 23289566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)dm, &comm)); 23299566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 23309371c9d4SSatish Balay if (size == 1) { 23319371c9d4SSatish Balay *distributed = PETSC_FALSE; 23329371c9d4SSatish Balay PetscFunctionReturn(0); 23339371c9d4SSatish Balay } 23349566063dSJacob Faibussowitsch PetscCall(DMPlexGetChart(dm, &pStart, &pEnd)); 233535d70e31SStefano Zampini count = (pEnd - pStart) > 0 ? 1 : 0; 23369566063dSJacob Faibussowitsch PetscCallMPI(MPI_Allreduce(MPI_IN_PLACE, &count, 1, MPIU_INT, MPI_SUM, comm)); 23375fa78c88SVaclav Hapla *distributed = count > 1 ? PETSC_TRUE : PETSC_FALSE; 23385fa78c88SVaclav Hapla PetscFunctionReturn(0); 23395fa78c88SVaclav Hapla } 2340