xref: /petsc/src/dm/impls/plex/plexfem.c (revision 0318f8a0986eeef85110e2c009122da1f76c5cfa)
1af0996ceSBarry Smith #include <petsc/private/dmpleximpl.h> /*I      "petscdmplex.h"   I*/
2da97024aSMatthew G. Knepley #include <petscsf.h>
3cb1e1211SMatthew G Knepley 
48e3a2eefSMatthew G. Knepley #include <petscblaslapack.h>
5e8f14785SLisandro Dalcin #include <petsc/private/hashsetij.h>
6af0996ceSBarry Smith #include <petsc/private/petscfeimpl.h>
7af0996ceSBarry Smith #include <petsc/private/petscfvimpl.h>
8a0845e3aSMatthew G. Knepley 
95f0b18bfSMatthew G. Knepley PetscBool  Clementcite       = PETSC_FALSE;
105f0b18bfSMatthew G. Knepley const char ClementCitation[] = "@article{clement1975approximation,\n"
115f0b18bfSMatthew G. Knepley                                "  title   = {Approximation by finite element functions using local regularization},\n"
125f0b18bfSMatthew G. Knepley                                "  author  = {Philippe Cl{\\'e}ment},\n"
135f0b18bfSMatthew G. Knepley                                "  journal = {Revue fran{\\c{c}}aise d'automatique, informatique, recherche op{\\'e}rationnelle. Analyse num{\\'e}rique},\n"
145f0b18bfSMatthew G. Knepley                                "  volume  = {9},\n"
155f0b18bfSMatthew G. Knepley                                "  number  = {R2},\n"
165f0b18bfSMatthew G. Knepley                                "  pages   = {77--84},\n"
175f0b18bfSMatthew G. Knepley                                "  year    = {1975}\n}\n";
185f0b18bfSMatthew G. Knepley 
19d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexConvertPlex(DM dm, DM *plex, PetscBool copy)
20d71ae5a4SJacob Faibussowitsch {
212f856554SMatthew G. Knepley   PetscBool isPlex;
222f856554SMatthew G. Knepley 
232f856554SMatthew G. Knepley   PetscFunctionBegin;
249566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)dm, DMPLEX, &isPlex));
252f856554SMatthew G. Knepley   if (isPlex) {
262f856554SMatthew G. Knepley     *plex = dm;
279566063dSJacob Faibussowitsch     PetscCall(PetscObjectReference((PetscObject)dm));
282f856554SMatthew G. Knepley   } else {
299566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)dm, "dm_plex", (PetscObject *)plex));
302f856554SMatthew G. Knepley     if (!*plex) {
319566063dSJacob Faibussowitsch       PetscCall(DMConvert(dm, DMPLEX, plex));
329566063dSJacob Faibussowitsch       PetscCall(PetscObjectCompose((PetscObject)dm, "dm_plex", (PetscObject)*plex));
33cbf8eb3cSStefano Zampini     } else {
34cbf8eb3cSStefano Zampini       PetscCall(PetscObjectReference((PetscObject)*plex));
35cbf8eb3cSStefano Zampini     }
362f856554SMatthew G. Knepley     if (copy) {
372f856554SMatthew G. Knepley       DMSubDomainHookLink link;
389a2a23afSMatthew G. Knepley 
39cbf8eb3cSStefano Zampini       PetscCall(DMCopyDS(dm, *plex));
409566063dSJacob Faibussowitsch       PetscCall(DMCopyAuxiliaryVec(dm, *plex));
419a2a23afSMatthew G. Knepley       /* Run the subdomain hook (this will copy the DMSNES/DMTS) */
422f856554SMatthew G. Knepley       for (link = dm->subdomainhook; link; link = link->next) {
439566063dSJacob Faibussowitsch         if (link->ddhook) PetscCall((*link->ddhook)(dm, *plex, link->ctx));
442f856554SMatthew G. Knepley       }
452f856554SMatthew G. Knepley     }
462f856554SMatthew G. Knepley   }
473ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
482f856554SMatthew G. Knepley }
492f856554SMatthew G. Knepley 
50d71ae5a4SJacob Faibussowitsch static PetscErrorCode PetscContainerUserDestroy_PetscFEGeom(void *ctx)
51d71ae5a4SJacob Faibussowitsch {
529b6f715bSMatthew G. Knepley   PetscFEGeom *geom = (PetscFEGeom *)ctx;
539b6f715bSMatthew G. Knepley 
549b6f715bSMatthew G. Knepley   PetscFunctionBegin;
559566063dSJacob Faibussowitsch   PetscCall(PetscFEGeomDestroy(&geom));
563ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
579b6f715bSMatthew G. Knepley }
589b6f715bSMatthew G. Knepley 
59d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexGetFEGeom(DMField coordField, IS pointIS, PetscQuadrature quad, PetscBool faceData, PetscFEGeom **geom)
60d71ae5a4SJacob Faibussowitsch {
619b6f715bSMatthew G. Knepley   char           composeStr[33] = {0};
629b6f715bSMatthew G. Knepley   PetscObjectId  id;
639b6f715bSMatthew G. Knepley   PetscContainer container;
649b6f715bSMatthew G. Knepley 
659b6f715bSMatthew G. Knepley   PetscFunctionBegin;
669566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetId((PetscObject)quad, &id));
6763a3b9bcSJacob Faibussowitsch   PetscCall(PetscSNPrintf(composeStr, 32, "DMPlexGetFEGeom_%" PetscInt64_FMT "\n", id));
689566063dSJacob Faibussowitsch   PetscCall(PetscObjectQuery((PetscObject)pointIS, composeStr, (PetscObject *)&container));
699b6f715bSMatthew G. Knepley   if (container) {
709566063dSJacob Faibussowitsch     PetscCall(PetscContainerGetPointer(container, (void **)geom));
719b6f715bSMatthew G. Knepley   } else {
729566063dSJacob Faibussowitsch     PetscCall(DMFieldCreateFEGeom(coordField, pointIS, quad, faceData, geom));
739566063dSJacob Faibussowitsch     PetscCall(PetscContainerCreate(PETSC_COMM_SELF, &container));
749566063dSJacob Faibussowitsch     PetscCall(PetscContainerSetPointer(container, (void *)*geom));
759566063dSJacob Faibussowitsch     PetscCall(PetscContainerSetUserDestroy(container, PetscContainerUserDestroy_PetscFEGeom));
769566063dSJacob Faibussowitsch     PetscCall(PetscObjectCompose((PetscObject)pointIS, composeStr, (PetscObject)container));
779566063dSJacob Faibussowitsch     PetscCall(PetscContainerDestroy(&container));
789b6f715bSMatthew G. Knepley   }
793ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
809b6f715bSMatthew G. Knepley }
819b6f715bSMatthew G. Knepley 
82d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexRestoreFEGeom(DMField coordField, IS pointIS, PetscQuadrature quad, PetscBool faceData, PetscFEGeom **geom)
83d71ae5a4SJacob Faibussowitsch {
849b6f715bSMatthew G. Knepley   PetscFunctionBegin;
859b6f715bSMatthew G. Knepley   *geom = NULL;
863ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
879b6f715bSMatthew G. Knepley }
889b6f715bSMatthew G. Knepley 
8946fa42a0SMatthew G. Knepley /*@
9046fa42a0SMatthew G. Knepley   DMPlexGetScale - Get the scale for the specified fundamental unit
9146fa42a0SMatthew G. Knepley 
9220f4b53cSBarry Smith   Not Collective
9346fa42a0SMatthew G. Knepley 
944165533cSJose E. Roman   Input Parameters:
95a1cb98faSBarry Smith + dm   - the `DM`
9646fa42a0SMatthew G. Knepley - unit - The SI unit
9746fa42a0SMatthew G. Knepley 
984165533cSJose E. Roman   Output Parameter:
9946fa42a0SMatthew G. Knepley . scale - The value used to scale all quantities with this unit
10046fa42a0SMatthew G. Knepley 
10146fa42a0SMatthew G. Knepley   Level: advanced
10246fa42a0SMatthew G. Knepley 
1031cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexSetScale()`, `PetscUnit`
10446fa42a0SMatthew G. Knepley @*/
105d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexGetScale(DM dm, PetscUnit unit, PetscReal *scale)
106d71ae5a4SJacob Faibussowitsch {
107cb1e1211SMatthew G Knepley   DM_Plex *mesh = (DM_Plex *)dm->data;
108cb1e1211SMatthew G Knepley 
109cb1e1211SMatthew G Knepley   PetscFunctionBegin;
110cb1e1211SMatthew G Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
1114f572ea9SToby Isaac   PetscAssertPointer(scale, 3);
112cb1e1211SMatthew G Knepley   *scale = mesh->scale[unit];
1133ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
114cb1e1211SMatthew G Knepley }
115cb1e1211SMatthew G Knepley 
11646fa42a0SMatthew G. Knepley /*@
11746fa42a0SMatthew G. Knepley   DMPlexSetScale - Set the scale for the specified fundamental unit
11846fa42a0SMatthew G. Knepley 
11920f4b53cSBarry Smith   Not Collective
12046fa42a0SMatthew G. Knepley 
1214165533cSJose E. Roman   Input Parameters:
122a1cb98faSBarry Smith + dm    - the `DM`
12346fa42a0SMatthew G. Knepley . unit  - The SI unit
12446fa42a0SMatthew G. Knepley - scale - The value used to scale all quantities with this unit
12546fa42a0SMatthew G. Knepley 
12646fa42a0SMatthew G. Knepley   Level: advanced
12746fa42a0SMatthew G. Knepley 
1281cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexGetScale()`, `PetscUnit`
12946fa42a0SMatthew G. Knepley @*/
130d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexSetScale(DM dm, PetscUnit unit, PetscReal scale)
131d71ae5a4SJacob Faibussowitsch {
132cb1e1211SMatthew G Knepley   DM_Plex *mesh = (DM_Plex *)dm->data;
133cb1e1211SMatthew G Knepley 
134cb1e1211SMatthew G Knepley   PetscFunctionBegin;
135cb1e1211SMatthew G Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
136cb1e1211SMatthew G Knepley   mesh->scale[unit] = scale;
1373ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
138cb1e1211SMatthew G Knepley }
139cb1e1211SMatthew G Knepley 
140d2b2dc1eSMatthew G. Knepley PetscErrorCode DMPlexGetUseCeed_Plex(DM dm, PetscBool *useCeed)
141d2b2dc1eSMatthew G. Knepley {
142d2b2dc1eSMatthew G. Knepley   DM_Plex *mesh = (DM_Plex *)dm->data;
143d2b2dc1eSMatthew G. Knepley 
144d2b2dc1eSMatthew G. Knepley   PetscFunctionBegin;
145d2b2dc1eSMatthew G. Knepley   *useCeed = mesh->useCeed;
146d2b2dc1eSMatthew G. Knepley   PetscFunctionReturn(PETSC_SUCCESS);
147d2b2dc1eSMatthew G. Knepley }
148d2b2dc1eSMatthew G. Knepley PetscErrorCode DMPlexSetUseCeed_Plex(DM dm, PetscBool useCeed)
149d2b2dc1eSMatthew G. Knepley {
150d2b2dc1eSMatthew G. Knepley   DM_Plex *mesh = (DM_Plex *)dm->data;
151d2b2dc1eSMatthew G. Knepley 
152d2b2dc1eSMatthew G. Knepley   PetscFunctionBegin;
153d2b2dc1eSMatthew G. Knepley   mesh->useCeed = useCeed;
154d2b2dc1eSMatthew G. Knepley   PetscFunctionReturn(PETSC_SUCCESS);
155d2b2dc1eSMatthew G. Knepley }
156d2b2dc1eSMatthew G. Knepley 
157d2b2dc1eSMatthew G. Knepley /*@
158d2b2dc1eSMatthew G. Knepley   DMPlexGetUseCeed - Get flag for using the LibCEED backend
159d2b2dc1eSMatthew G. Knepley 
160d2b2dc1eSMatthew G. Knepley   Not collective
161d2b2dc1eSMatthew G. Knepley 
162d2b2dc1eSMatthew G. Knepley   Input Parameter:
163d2b2dc1eSMatthew G. Knepley . dm - The `DM`
164d2b2dc1eSMatthew G. Knepley 
165d2b2dc1eSMatthew G. Knepley   Output Parameter:
166d2b2dc1eSMatthew G. Knepley . useCeed - The flag
167d2b2dc1eSMatthew G. Knepley 
168d2b2dc1eSMatthew G. Knepley   Level: intermediate
169d2b2dc1eSMatthew G. Knepley 
170d2b2dc1eSMatthew G. Knepley .seealso: `DMPlexSetUseCeed()`
171d2b2dc1eSMatthew G. Knepley @*/
172d2b2dc1eSMatthew G. Knepley PetscErrorCode DMPlexGetUseCeed(DM dm, PetscBool *useCeed)
173d2b2dc1eSMatthew G. Knepley {
174d2b2dc1eSMatthew G. Knepley   PetscFunctionBegin;
175d2b2dc1eSMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
176d2b2dc1eSMatthew G. Knepley   PetscAssertPointer(useCeed, 2);
177d2b2dc1eSMatthew G. Knepley   *useCeed = PETSC_FALSE;
178d2b2dc1eSMatthew G. Knepley   PetscTryMethod(dm, "DMPlexGetUseCeed_C", (DM, PetscBool *), (dm, useCeed));
179d2b2dc1eSMatthew G. Knepley   PetscFunctionReturn(PETSC_SUCCESS);
180d2b2dc1eSMatthew G. Knepley }
181d2b2dc1eSMatthew G. Knepley 
182d2b2dc1eSMatthew G. Knepley /*@
183d2b2dc1eSMatthew G. Knepley   DMPlexSetUseCeed - Set flag for using the LibCEED backend
184d2b2dc1eSMatthew G. Knepley 
185d2b2dc1eSMatthew G. Knepley   Not collective
186d2b2dc1eSMatthew G. Knepley 
187d2b2dc1eSMatthew G. Knepley   Input Parameters:
188d2b2dc1eSMatthew G. Knepley + dm      - The `DM`
189d2b2dc1eSMatthew G. Knepley - useCeed - The flag
190d2b2dc1eSMatthew G. Knepley 
191d2b2dc1eSMatthew G. Knepley   Level: intermediate
192d2b2dc1eSMatthew G. Knepley 
193fe8e7dddSPierre Jolivet .seealso: `DMPlexGetUseCeed()`
194d2b2dc1eSMatthew G. Knepley @*/
195d2b2dc1eSMatthew G. Knepley PetscErrorCode DMPlexSetUseCeed(DM dm, PetscBool useCeed)
196d2b2dc1eSMatthew G. Knepley {
197d2b2dc1eSMatthew G. Knepley   PetscFunctionBegin;
198d2b2dc1eSMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
199d2b2dc1eSMatthew G. Knepley   PetscValidLogicalCollectiveBool(dm, useCeed, 2);
200d2b2dc1eSMatthew G. Knepley   PetscUseMethod(dm, "DMPlexSetUseCeed_C", (DM, PetscBool), (dm, useCeed));
201d2b2dc1eSMatthew G. Knepley   PetscFunctionReturn(PETSC_SUCCESS);
202d2b2dc1eSMatthew G. Knepley }
203d2b2dc1eSMatthew G. Knepley 
204e8e188d2SZach Atkins /*@
205e8e188d2SZach Atkins   DMPlexGetUseMatClosurePermutation - Get flag for using a closure permutation for matrix insertion
206e8e188d2SZach Atkins 
207e8e188d2SZach Atkins   Not collective
208e8e188d2SZach Atkins 
209e8e188d2SZach Atkins   Input Parameter:
210e8e188d2SZach Atkins . dm - The `DM`
211e8e188d2SZach Atkins 
212e8e188d2SZach Atkins   Output Parameter:
213e8e188d2SZach Atkins . useClPerm - The flag
214e8e188d2SZach Atkins 
215e8e188d2SZach Atkins   Level: intermediate
216e8e188d2SZach Atkins 
217e8e188d2SZach Atkins .seealso: `DMPlexSetUseMatClosurePermutation()`
218e8e188d2SZach Atkins @*/
219e8e188d2SZach Atkins PetscErrorCode DMPlexGetUseMatClosurePermutation(DM dm, PetscBool *useClPerm)
220e8e188d2SZach Atkins {
221e8e188d2SZach Atkins   DM_Plex *mesh = (DM_Plex *)dm->data;
222e8e188d2SZach Atkins 
223e8e188d2SZach Atkins   PetscFunctionBegin;
224e8e188d2SZach Atkins   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
225e8e188d2SZach Atkins   PetscAssertPointer(useClPerm, 2);
226e8e188d2SZach Atkins   *useClPerm = mesh->useMatClPerm;
227e8e188d2SZach Atkins   PetscFunctionReturn(PETSC_SUCCESS);
228e8e188d2SZach Atkins }
229e8e188d2SZach Atkins 
230e8e188d2SZach Atkins /*@
231e8e188d2SZach Atkins   DMPlexSetUseMatClosurePermutation - Set flag for using a closure permutation for matrix insertion
232e8e188d2SZach Atkins 
233e8e188d2SZach Atkins   Not collective
234e8e188d2SZach Atkins 
235e8e188d2SZach Atkins   Input Parameters:
236e8e188d2SZach Atkins + dm        - The `DM`
237e8e188d2SZach Atkins - useClPerm - The flag
238e8e188d2SZach Atkins 
239e8e188d2SZach Atkins   Level: intermediate
240e8e188d2SZach Atkins 
241e8e188d2SZach Atkins .seealso: `DMPlexGetUseMatClosurePermutation()`
242e8e188d2SZach Atkins @*/
243e8e188d2SZach Atkins PetscErrorCode DMPlexSetUseMatClosurePermutation(DM dm, PetscBool useClPerm)
244e8e188d2SZach Atkins {
245e8e188d2SZach Atkins   DM_Plex *mesh = (DM_Plex *)dm->data;
246e8e188d2SZach Atkins 
247e8e188d2SZach Atkins   PetscFunctionBegin;
248e8e188d2SZach Atkins   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
249e8e188d2SZach Atkins   PetscValidLogicalCollectiveBool(dm, useClPerm, 2);
250e8e188d2SZach Atkins   mesh->useMatClPerm = useClPerm;
251e8e188d2SZach Atkins   PetscFunctionReturn(PETSC_SUCCESS);
252e8e188d2SZach Atkins }
253e8e188d2SZach Atkins 
254d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexProjectRigidBody_Private(PetscInt dim, PetscReal t, const PetscReal X[], PetscInt Nc, PetscScalar *mode, void *ctx)
255d71ae5a4SJacob Faibussowitsch {
2569371c9d4SSatish Balay   const PetscInt eps[3][3][3] = {
2579371c9d4SSatish Balay     {{0, 0, 0},  {0, 0, 1},  {0, -1, 0}},
2589371c9d4SSatish Balay     {{0, 0, -1}, {0, 0, 0},  {1, 0, 0} },
2599371c9d4SSatish Balay     {{0, 1, 0},  {-1, 0, 0}, {0, 0, 0} }
2609371c9d4SSatish Balay   };
261026175e5SToby Isaac   PetscInt *ctxInt = (PetscInt *)ctx;
262ad917190SMatthew G. Knepley   PetscInt  dim2   = ctxInt[0];
263026175e5SToby Isaac   PetscInt  d      = ctxInt[1];
264026175e5SToby Isaac   PetscInt  i, j, k = dim > 2 ? d - dim : d;
265026175e5SToby Isaac 
266ad917190SMatthew G. Knepley   PetscFunctionBegin;
26763a3b9bcSJacob Faibussowitsch   PetscCheck(dim == dim2, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Input dimension %" PetscInt_FMT " does not match context dimension %" PetscInt_FMT, dim, dim2);
268026175e5SToby Isaac   for (i = 0; i < dim; i++) mode[i] = 0.;
269026175e5SToby Isaac   if (d < dim) {
27012adca46SMatthew G. Knepley     mode[d] = 1.; /* Translation along axis d */
271ad917190SMatthew G. Knepley   } else {
272026175e5SToby Isaac     for (i = 0; i < dim; i++) {
2739371c9d4SSatish Balay       for (j = 0; j < dim; j++) { mode[j] += eps[i][j][k] * X[i]; /* Rotation about axis d */ }
274026175e5SToby Isaac     }
275026175e5SToby Isaac   }
2763ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
277026175e5SToby Isaac }
278026175e5SToby Isaac 
279cc4e42d9SMartin Diehl /*@
28012adca46SMatthew G. Knepley   DMPlexCreateRigidBody - For the default global section, create rigid body modes by function space interpolation
281cb1e1211SMatthew G Knepley 
28220f4b53cSBarry Smith   Collective
283cb1e1211SMatthew G Knepley 
2844165533cSJose E. Roman   Input Parameters:
285a1cb98faSBarry Smith + dm    - the `DM`
28656cf3b9cSMatthew G. Knepley - field - The field number for the rigid body space, or 0 for the default
287cb1e1211SMatthew G Knepley 
2884165533cSJose E. Roman   Output Parameter:
289cb1e1211SMatthew G Knepley . sp - the null space
290cb1e1211SMatthew G Knepley 
291cb1e1211SMatthew G Knepley   Level: advanced
292cb1e1211SMatthew G Knepley 
293a1cb98faSBarry Smith   Note:
294a1cb98faSBarry Smith   This is necessary to provide a suitable coarse space for algebraic multigrid
295a1cb98faSBarry Smith 
2961cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `MatNullSpaceCreate()`, `PCGAMG`
297cb1e1211SMatthew G Knepley @*/
298d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexCreateRigidBody(DM dm, PetscInt field, MatNullSpace *sp)
299d71ae5a4SJacob Faibussowitsch {
30056cf3b9cSMatthew G. Knepley   PetscErrorCode (**func)(PetscInt, PetscReal, const PetscReal *, PetscInt, PetscScalar *, void *);
301cb1e1211SMatthew G Knepley   MPI_Comm     comm;
302026175e5SToby Isaac   Vec          mode[6];
303026175e5SToby Isaac   PetscSection section, globalSection;
30456cf3b9cSMatthew G. Knepley   PetscInt     dim, dimEmbed, Nf, n, m, mmin, d, i, j;
305db14aad5SMatthew G. Knepley   void       **ctxs;
306cb1e1211SMatthew G Knepley 
307cb1e1211SMatthew G Knepley   PetscFunctionBegin;
3089566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)dm, &comm));
3099566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dm, &dim));
3109566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateDim(dm, &dimEmbed));
3119566063dSJacob Faibussowitsch   PetscCall(DMGetNumFields(dm, &Nf));
31263a3b9bcSJacob Faibussowitsch   PetscCheck(!Nf || !(field < 0 || field >= Nf), comm, PETSC_ERR_ARG_OUTOFRANGE, "Field %" PetscInt_FMT " is not in [0, %" PetscInt_FMT ")", field, Nf);
31356cf3b9cSMatthew G. Knepley   if (dim == 1 && Nf < 2) {
3149566063dSJacob Faibussowitsch     PetscCall(MatNullSpaceCreate(comm, PETSC_TRUE, 0, NULL, sp));
3153ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
316cb1e1211SMatthew G Knepley   }
3179566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dm, &section));
3189566063dSJacob Faibussowitsch   PetscCall(DMGetGlobalSection(dm, &globalSection));
3199566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetConstrainedStorageSize(globalSection, &n));
320db14aad5SMatthew G. Knepley   PetscCall(PetscCalloc2(Nf, &func, Nf, &ctxs));
321b247467aSMatthew G. Knepley   m = (dim * (dim + 1)) / 2;
3229566063dSJacob Faibussowitsch   PetscCall(VecCreate(comm, &mode[0]));
3239566063dSJacob Faibussowitsch   PetscCall(VecSetType(mode[0], dm->vectype));
3249566063dSJacob Faibussowitsch   PetscCall(VecSetSizes(mode[0], n, PETSC_DETERMINE));
3259566063dSJacob Faibussowitsch   PetscCall(VecSetUp(mode[0]));
3269566063dSJacob Faibussowitsch   PetscCall(VecGetSize(mode[0], &n));
327b247467aSMatthew G. Knepley   mmin        = PetscMin(m, n);
32856cf3b9cSMatthew G. Knepley   func[field] = DMPlexProjectRigidBody_Private;
3299566063dSJacob Faibussowitsch   for (i = 1; i < m; ++i) PetscCall(VecDuplicate(mode[0], &mode[i]));
330026175e5SToby Isaac   for (d = 0; d < m; d++) {
331330485fdSToby Isaac     PetscInt ctx[2];
332cb1e1211SMatthew G Knepley 
333db14aad5SMatthew G. Knepley     ctxs[field] = (void *)(&ctx[0]);
3349d8fbdeaSMatthew G. Knepley     ctx[0]      = dimEmbed;
335330485fdSToby Isaac     ctx[1]      = d;
336db14aad5SMatthew G. Knepley     PetscCall(DMProjectFunction(dm, 0.0, func, ctxs, INSERT_VALUES, mode[d]));
337cb1e1211SMatthew G Knepley   }
3383b2202bfSJacob Faibussowitsch   /* Orthonormalize system */
339b50a2c0aSJacob Faibussowitsch   for (i = 0; i < mmin; ++i) {
340b77f2eeeSJacob Faibussowitsch     PetscScalar dots[6];
341b50a2c0aSJacob Faibussowitsch 
3429566063dSJacob Faibussowitsch     PetscCall(VecNormalize(mode[i], NULL));
3439566063dSJacob Faibussowitsch     PetscCall(VecMDot(mode[i], mmin - i - 1, mode + i + 1, dots + i + 1));
344b50a2c0aSJacob Faibussowitsch     for (j = i + 1; j < mmin; ++j) {
345b77f2eeeSJacob Faibussowitsch       dots[j] *= -1.0;
3469566063dSJacob Faibussowitsch       PetscCall(VecAXPY(mode[j], dots[j], mode[i]));
347b50a2c0aSJacob Faibussowitsch     }
348cb1e1211SMatthew G Knepley   }
3499566063dSJacob Faibussowitsch   PetscCall(MatNullSpaceCreate(comm, PETSC_FALSE, mmin, mode, sp));
3509566063dSJacob Faibussowitsch   for (i = 0; i < m; ++i) PetscCall(VecDestroy(&mode[i]));
351db14aad5SMatthew G. Knepley   PetscCall(PetscFree2(func, ctxs));
3523ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
353cb1e1211SMatthew G Knepley }
354cb1e1211SMatthew G Knepley 
355cc4e42d9SMartin Diehl /*@
35612adca46SMatthew G. Knepley   DMPlexCreateRigidBodies - For the default global section, create rigid body modes by function space interpolation
35712adca46SMatthew G. Knepley 
35820f4b53cSBarry Smith   Collective
35912adca46SMatthew G. Knepley 
3604165533cSJose E. Roman   Input Parameters:
361a1cb98faSBarry Smith + dm    - the `DM`
36212adca46SMatthew G. Knepley . nb    - The number of bodies
363a1cb98faSBarry Smith . label - The `DMLabel` marking each domain
36412adca46SMatthew G. Knepley . nids  - The number of ids per body
36512adca46SMatthew G. Knepley - ids   - An array of the label ids in sequence for each domain
36612adca46SMatthew G. Knepley 
3674165533cSJose E. Roman   Output Parameter:
36812adca46SMatthew G. Knepley . sp - the null space
36912adca46SMatthew G. Knepley 
37012adca46SMatthew G. Knepley   Level: advanced
37112adca46SMatthew G. Knepley 
372a1cb98faSBarry Smith   Note:
373a1cb98faSBarry Smith   This is necessary to provide a suitable coarse space for algebraic multigrid
374a1cb98faSBarry Smith 
3751cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `MatNullSpaceCreate()`
37612adca46SMatthew G. Knepley @*/
377d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexCreateRigidBodies(DM dm, PetscInt nb, DMLabel label, const PetscInt nids[], const PetscInt ids[], MatNullSpace *sp)
378d71ae5a4SJacob Faibussowitsch {
37912adca46SMatthew G. Knepley   MPI_Comm     comm;
38012adca46SMatthew G. Knepley   PetscSection section, globalSection;
38112adca46SMatthew G. Knepley   Vec         *mode;
38212adca46SMatthew G. Knepley   PetscScalar *dots;
38312adca46SMatthew G. Knepley   PetscInt     dim, dimEmbed, n, m, b, d, i, j, off;
38412adca46SMatthew G. Knepley 
38512adca46SMatthew G. Knepley   PetscFunctionBegin;
3869566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)dm, &comm));
3879566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dm, &dim));
3889566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateDim(dm, &dimEmbed));
3899566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dm, &section));
3909566063dSJacob Faibussowitsch   PetscCall(DMGetGlobalSection(dm, &globalSection));
3919566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetConstrainedStorageSize(globalSection, &n));
39212adca46SMatthew G. Knepley   m = nb * (dim * (dim + 1)) / 2;
3939566063dSJacob Faibussowitsch   PetscCall(PetscMalloc2(m, &mode, m, &dots));
3949566063dSJacob Faibussowitsch   PetscCall(VecCreate(comm, &mode[0]));
3959566063dSJacob Faibussowitsch   PetscCall(VecSetSizes(mode[0], n, PETSC_DETERMINE));
3969566063dSJacob Faibussowitsch   PetscCall(VecSetUp(mode[0]));
3979566063dSJacob Faibussowitsch   for (i = 1; i < m; ++i) PetscCall(VecDuplicate(mode[0], &mode[i]));
39812adca46SMatthew G. Knepley   for (b = 0, off = 0; b < nb; ++b) {
39912adca46SMatthew G. Knepley     for (d = 0; d < m / nb; ++d) {
40012adca46SMatthew G. Knepley       PetscInt ctx[2];
40112adca46SMatthew G. Knepley       PetscErrorCode (*func)(PetscInt, PetscReal, const PetscReal *, PetscInt, PetscScalar *, void *) = DMPlexProjectRigidBody_Private;
40212adca46SMatthew G. Knepley       void *voidctx                                                                                   = (void *)(&ctx[0]);
40312adca46SMatthew G. Knepley 
40412adca46SMatthew G. Knepley       ctx[0] = dimEmbed;
40512adca46SMatthew G. Knepley       ctx[1] = d;
4069566063dSJacob Faibussowitsch       PetscCall(DMProjectFunctionLabel(dm, 0.0, label, nids[b], &ids[off], 0, NULL, &func, &voidctx, INSERT_VALUES, mode[d]));
40712adca46SMatthew G. Knepley       off += nids[b];
40812adca46SMatthew G. Knepley     }
40912adca46SMatthew G. Knepley   }
4103b2202bfSJacob Faibussowitsch   /* Orthonormalize system */
411606c1a1cSJacob Faibussowitsch   for (i = 0; i < m; ++i) {
412b77f2eeeSJacob Faibussowitsch     PetscScalar dots[6];
4135a0e29b9SJacob Faibussowitsch 
4149566063dSJacob Faibussowitsch     PetscCall(VecNormalize(mode[i], NULL));
4159566063dSJacob Faibussowitsch     PetscCall(VecMDot(mode[i], m - i - 1, mode + i + 1, dots + i + 1));
4165a0e29b9SJacob Faibussowitsch     for (j = i + 1; j < m; ++j) {
417b77f2eeeSJacob Faibussowitsch       dots[j] *= -1.0;
4189566063dSJacob Faibussowitsch       PetscCall(VecAXPY(mode[j], dots[j], mode[i]));
4195a0e29b9SJacob Faibussowitsch     }
42012adca46SMatthew G. Knepley   }
4219566063dSJacob Faibussowitsch   PetscCall(MatNullSpaceCreate(comm, PETSC_FALSE, m, mode, sp));
4229566063dSJacob Faibussowitsch   for (i = 0; i < m; ++i) PetscCall(VecDestroy(&mode[i]));
4239566063dSJacob Faibussowitsch   PetscCall(PetscFree2(mode, dots));
4243ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
42512adca46SMatthew G. Knepley }
42612adca46SMatthew G. Knepley 
427b29cfa1cSToby Isaac /*@
428b29cfa1cSToby Isaac   DMPlexSetMaxProjectionHeight - In DMPlexProjectXXXLocal() functions, the projected values of a basis function's dofs
429b29cfa1cSToby Isaac   are computed by associating the basis function with one of the mesh points in its transitively-closed support, and
430a4e35b19SJacob Faibussowitsch   evaluating the dual space basis of that point.
431b29cfa1cSToby Isaac 
432b29cfa1cSToby Isaac   Input Parameters:
433a1cb98faSBarry Smith + dm     - the `DMPLEX` object
434b29cfa1cSToby Isaac - height - the maximum projection height >= 0
435b29cfa1cSToby Isaac 
436b29cfa1cSToby Isaac   Level: advanced
437b29cfa1cSToby Isaac 
438a4e35b19SJacob Faibussowitsch   Notes:
439a4e35b19SJacob Faibussowitsch   A basis function is associated with the point in its transitively-closed support whose mesh
440a4e35b19SJacob Faibussowitsch   height is highest (w.r.t. DAG height), but not greater than the maximum projection height,
441a4e35b19SJacob Faibussowitsch   which is set with this function.  By default, the maximum projection height is zero, which
442a4e35b19SJacob Faibussowitsch   means that only mesh cells are used to project basis functions.  A height of one, for
443a4e35b19SJacob Faibussowitsch   example, evaluates a cell-interior basis functions using its cells dual space basis, but all
444a4e35b19SJacob Faibussowitsch   other basis functions with the dual space basis of a face.
445a4e35b19SJacob Faibussowitsch 
4461cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexGetMaxProjectionHeight()`, `DMProjectFunctionLocal()`, `DMProjectFunctionLabelLocal()`
447b29cfa1cSToby Isaac @*/
448d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexSetMaxProjectionHeight(DM dm, PetscInt height)
449d71ae5a4SJacob Faibussowitsch {
450b29cfa1cSToby Isaac   DM_Plex *plex = (DM_Plex *)dm->data;
451b29cfa1cSToby Isaac 
452b29cfa1cSToby Isaac   PetscFunctionBegin;
453b29cfa1cSToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
454b29cfa1cSToby Isaac   plex->maxProjectionHeight = height;
4553ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
456b29cfa1cSToby Isaac }
457b29cfa1cSToby Isaac 
458b29cfa1cSToby Isaac /*@
459b29cfa1cSToby Isaac   DMPlexGetMaxProjectionHeight - Get the maximum height (w.r.t. DAG) of mesh points used to evaluate dual bases in
460b29cfa1cSToby Isaac   DMPlexProjectXXXLocal() functions.
461b29cfa1cSToby Isaac 
4622fe279fdSBarry Smith   Input Parameter:
463a1cb98faSBarry Smith . dm - the `DMPLEX` object
464b29cfa1cSToby Isaac 
4652fe279fdSBarry Smith   Output Parameter:
466b29cfa1cSToby Isaac . height - the maximum projection height
467b29cfa1cSToby Isaac 
468b29cfa1cSToby Isaac   Level: intermediate
469b29cfa1cSToby Isaac 
4701cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexSetMaxProjectionHeight()`, `DMProjectFunctionLocal()`, `DMProjectFunctionLabelLocal()`
471b29cfa1cSToby Isaac @*/
472d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexGetMaxProjectionHeight(DM dm, PetscInt *height)
473d71ae5a4SJacob Faibussowitsch {
474b29cfa1cSToby Isaac   DM_Plex *plex = (DM_Plex *)dm->data;
475b29cfa1cSToby Isaac 
476b29cfa1cSToby Isaac   PetscFunctionBegin;
477b29cfa1cSToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
478b29cfa1cSToby Isaac   *height = plex->maxProjectionHeight;
4793ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
480b29cfa1cSToby Isaac }
481b29cfa1cSToby Isaac 
482ca3d3a14SMatthew G. Knepley typedef struct {
483ca3d3a14SMatthew G. Knepley   PetscReal    alpha; /* The first Euler angle, and in 2D the only one */
484ca3d3a14SMatthew G. Knepley   PetscReal    beta;  /* The second Euler angle */
485ca3d3a14SMatthew G. Knepley   PetscReal    gamma; /* The third Euler angle */
486ca3d3a14SMatthew G. Knepley   PetscInt     dim;   /* The dimension of R */
487ca3d3a14SMatthew G. Knepley   PetscScalar *R;     /* The rotation matrix, transforming a vector in the local basis to the global basis */
488ca3d3a14SMatthew G. Knepley   PetscScalar *RT;    /* The transposed rotation matrix, transforming a vector in the global basis to the local basis */
489ca3d3a14SMatthew G. Knepley } RotCtx;
490ca3d3a14SMatthew G. Knepley 
491ca3d3a14SMatthew G. Knepley /*
492ca3d3a14SMatthew G. Knepley   Note: Following https://en.wikipedia.org/wiki/Euler_angles, we will specify Euler angles by extrinsic rotations, meaning that
493ca3d3a14SMatthew G. Knepley   we rotate with respect to a fixed initial coordinate system, the local basis (x-y-z). The global basis (X-Y-Z) is reached as follows:
494ca3d3a14SMatthew G. Knepley   $ The XYZ system rotates about the z axis by alpha. The X axis is now at angle alpha with respect to the x axis.
495ca3d3a14SMatthew G. Knepley   $ The XYZ system rotates again about the x axis by beta. The Z axis is now at angle beta with respect to the z axis.
496ca3d3a14SMatthew G. Knepley   $ The XYZ system rotates a third time about the z axis by gamma.
497ca3d3a14SMatthew G. Knepley */
498d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexBasisTransformSetUp_Rotation_Internal(DM dm, void *ctx)
499d71ae5a4SJacob Faibussowitsch {
500ca3d3a14SMatthew G. Knepley   RotCtx   *rc  = (RotCtx *)ctx;
501ca3d3a14SMatthew G. Knepley   PetscInt  dim = rc->dim;
502ca3d3a14SMatthew G. Knepley   PetscReal c1, s1, c2, s2, c3, s3;
503ca3d3a14SMatthew G. Knepley 
504ca3d3a14SMatthew G. Knepley   PetscFunctionBegin;
5059566063dSJacob Faibussowitsch   PetscCall(PetscMalloc2(PetscSqr(dim), &rc->R, PetscSqr(dim), &rc->RT));
506ca3d3a14SMatthew G. Knepley   switch (dim) {
507ca3d3a14SMatthew G. Knepley   case 2:
5089371c9d4SSatish Balay     c1       = PetscCosReal(rc->alpha);
5099371c9d4SSatish Balay     s1       = PetscSinReal(rc->alpha);
5109371c9d4SSatish Balay     rc->R[0] = c1;
5119371c9d4SSatish Balay     rc->R[1] = s1;
5129371c9d4SSatish Balay     rc->R[2] = -s1;
5139371c9d4SSatish Balay     rc->R[3] = c1;
5149566063dSJacob Faibussowitsch     PetscCall(PetscArraycpy(rc->RT, rc->R, PetscSqr(dim)));
515b458e8f1SJose E. Roman     DMPlex_Transpose2D_Internal(rc->RT);
516ca3d3a14SMatthew G. Knepley     break;
517ca3d3a14SMatthew G. Knepley   case 3:
5189371c9d4SSatish Balay     c1       = PetscCosReal(rc->alpha);
5199371c9d4SSatish Balay     s1       = PetscSinReal(rc->alpha);
5209371c9d4SSatish Balay     c2       = PetscCosReal(rc->beta);
5219371c9d4SSatish Balay     s2       = PetscSinReal(rc->beta);
5229371c9d4SSatish Balay     c3       = PetscCosReal(rc->gamma);
5239371c9d4SSatish Balay     s3       = PetscSinReal(rc->gamma);
5249371c9d4SSatish Balay     rc->R[0] = c1 * c3 - c2 * s1 * s3;
5259371c9d4SSatish Balay     rc->R[1] = c3 * s1 + c1 * c2 * s3;
5269371c9d4SSatish Balay     rc->R[2] = s2 * s3;
5279371c9d4SSatish Balay     rc->R[3] = -c1 * s3 - c2 * c3 * s1;
5289371c9d4SSatish Balay     rc->R[4] = c1 * c2 * c3 - s1 * s3;
5299371c9d4SSatish Balay     rc->R[5] = c3 * s2;
5309371c9d4SSatish Balay     rc->R[6] = s1 * s2;
5319371c9d4SSatish Balay     rc->R[7] = -c1 * s2;
5329371c9d4SSatish Balay     rc->R[8] = c2;
5339566063dSJacob Faibussowitsch     PetscCall(PetscArraycpy(rc->RT, rc->R, PetscSqr(dim)));
534b458e8f1SJose E. Roman     DMPlex_Transpose3D_Internal(rc->RT);
535ca3d3a14SMatthew G. Knepley     break;
536d71ae5a4SJacob Faibussowitsch   default:
537d71ae5a4SJacob Faibussowitsch     SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Dimension %" PetscInt_FMT " not supported", dim);
538ca3d3a14SMatthew G. Knepley   }
5393ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
540ca3d3a14SMatthew G. Knepley }
541ca3d3a14SMatthew G. Knepley 
542d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexBasisTransformDestroy_Rotation_Internal(DM dm, void *ctx)
543d71ae5a4SJacob Faibussowitsch {
544ca3d3a14SMatthew G. Knepley   RotCtx *rc = (RotCtx *)ctx;
545ca3d3a14SMatthew G. Knepley 
546ca3d3a14SMatthew G. Knepley   PetscFunctionBegin;
5479566063dSJacob Faibussowitsch   PetscCall(PetscFree2(rc->R, rc->RT));
5489566063dSJacob Faibussowitsch   PetscCall(PetscFree(rc));
5493ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
550ca3d3a14SMatthew G. Knepley }
551ca3d3a14SMatthew G. Knepley 
552d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexBasisTransformGetMatrix_Rotation_Internal(DM dm, const PetscReal x[], PetscBool l2g, const PetscScalar **A, void *ctx)
553d71ae5a4SJacob Faibussowitsch {
554ca3d3a14SMatthew G. Knepley   RotCtx *rc = (RotCtx *)ctx;
555ca3d3a14SMatthew G. Knepley 
556ca3d3a14SMatthew G. Knepley   PetscFunctionBeginHot;
5574f572ea9SToby Isaac   PetscAssertPointer(ctx, 5);
5589371c9d4SSatish Balay   if (l2g) {
5599371c9d4SSatish Balay     *A = rc->R;
5609371c9d4SSatish Balay   } else {
5619371c9d4SSatish Balay     *A = rc->RT;
5629371c9d4SSatish Balay   }
5633ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
564ca3d3a14SMatthew G. Knepley }
565ca3d3a14SMatthew G. Knepley 
566d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexBasisTransformApplyReal_Internal(DM dm, const PetscReal x[], PetscBool l2g, PetscInt dim, const PetscReal *y, PetscReal *z, void *ctx)
567d71ae5a4SJacob Faibussowitsch {
568ec277c0fSMatthew G. Knepley   PetscFunctionBegin;
569ab6a9622SMatthew G. Knepley #if defined(PETSC_USE_COMPLEX)
570ab6a9622SMatthew G. Knepley   switch (dim) {
5719371c9d4SSatish Balay   case 2: {
57227104ee2SJacob Faibussowitsch     PetscScalar yt[2] = {y[0], y[1]}, zt[2] = {0.0, 0.0};
573ab6a9622SMatthew G. Knepley 
5749566063dSJacob Faibussowitsch     PetscCall(DMPlexBasisTransformApply_Internal(dm, x, l2g, dim, yt, zt, ctx));
5759371c9d4SSatish Balay     z[0] = PetscRealPart(zt[0]);
5769371c9d4SSatish Balay     z[1] = PetscRealPart(zt[1]);
5779371c9d4SSatish Balay   } break;
5789371c9d4SSatish Balay   case 3: {
57927104ee2SJacob Faibussowitsch     PetscScalar yt[3] = {y[0], y[1], y[2]}, zt[3] = {0.0, 0.0, 0.0};
580ab6a9622SMatthew G. Knepley 
5819566063dSJacob Faibussowitsch     PetscCall(DMPlexBasisTransformApply_Internal(dm, x, l2g, dim, yt, zt, ctx));
5829371c9d4SSatish Balay     z[0] = PetscRealPart(zt[0]);
5839371c9d4SSatish Balay     z[1] = PetscRealPart(zt[1]);
5849371c9d4SSatish Balay     z[2] = PetscRealPart(zt[2]);
5859371c9d4SSatish Balay   } break;
586ab6a9622SMatthew G. Knepley   }
587ab6a9622SMatthew G. Knepley #else
5889566063dSJacob Faibussowitsch   PetscCall(DMPlexBasisTransformApply_Internal(dm, x, l2g, dim, y, z, ctx));
589ab6a9622SMatthew G. Knepley #endif
5903ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
591ab6a9622SMatthew G. Knepley }
592ab6a9622SMatthew G. Knepley 
593d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexBasisTransformApply_Internal(DM dm, const PetscReal x[], PetscBool l2g, PetscInt dim, const PetscScalar *y, PetscScalar *z, void *ctx)
594d71ae5a4SJacob Faibussowitsch {
595ca3d3a14SMatthew G. Knepley   const PetscScalar *A;
596ca3d3a14SMatthew G. Knepley 
597ca3d3a14SMatthew G. Knepley   PetscFunctionBeginHot;
5989566063dSJacob Faibussowitsch   PetscCall((*dm->transformGetMatrix)(dm, x, l2g, &A, ctx));
599ca3d3a14SMatthew G. Knepley   switch (dim) {
600d71ae5a4SJacob Faibussowitsch   case 2:
601d71ae5a4SJacob Faibussowitsch     DMPlex_Mult2D_Internal(A, 1, y, z);
602d71ae5a4SJacob Faibussowitsch     break;
603d71ae5a4SJacob Faibussowitsch   case 3:
604d71ae5a4SJacob Faibussowitsch     DMPlex_Mult3D_Internal(A, 1, y, z);
605d71ae5a4SJacob Faibussowitsch     break;
606ca3d3a14SMatthew G. Knepley   }
6073ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
608ca3d3a14SMatthew G. Knepley }
609ca3d3a14SMatthew G. Knepley 
610d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexBasisTransformField_Internal(DM dm, DM tdm, Vec tv, PetscInt p, PetscInt f, PetscBool l2g, PetscScalar *a)
611d71ae5a4SJacob Faibussowitsch {
612ca3d3a14SMatthew G. Knepley   PetscSection       ts;
613ca3d3a14SMatthew G. Knepley   const PetscScalar *ta, *tva;
614ca3d3a14SMatthew G. Knepley   PetscInt           dof;
615ca3d3a14SMatthew G. Knepley 
616ca3d3a14SMatthew G. Knepley   PetscFunctionBeginHot;
6179566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(tdm, &ts));
6189566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetFieldDof(ts, p, f, &dof));
6199566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(tv, &ta));
6209566063dSJacob Faibussowitsch   PetscCall(DMPlexPointLocalFieldRead(tdm, p, f, ta, &tva));
621ca3d3a14SMatthew G. Knepley   if (l2g) {
622ca3d3a14SMatthew G. Knepley     switch (dof) {
623d71ae5a4SJacob Faibussowitsch     case 4:
624d71ae5a4SJacob Faibussowitsch       DMPlex_Mult2D_Internal(tva, 1, a, a);
625d71ae5a4SJacob Faibussowitsch       break;
626d71ae5a4SJacob Faibussowitsch     case 9:
627d71ae5a4SJacob Faibussowitsch       DMPlex_Mult3D_Internal(tva, 1, a, a);
628d71ae5a4SJacob Faibussowitsch       break;
629ca3d3a14SMatthew G. Knepley     }
630ca3d3a14SMatthew G. Knepley   } else {
631ca3d3a14SMatthew G. Knepley     switch (dof) {
632d71ae5a4SJacob Faibussowitsch     case 4:
633d71ae5a4SJacob Faibussowitsch       DMPlex_MultTranspose2D_Internal(tva, 1, a, a);
634d71ae5a4SJacob Faibussowitsch       break;
635d71ae5a4SJacob Faibussowitsch     case 9:
636d71ae5a4SJacob Faibussowitsch       DMPlex_MultTranspose3D_Internal(tva, 1, a, a);
637d71ae5a4SJacob Faibussowitsch       break;
638ca3d3a14SMatthew G. Knepley     }
639ca3d3a14SMatthew G. Knepley   }
6409566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(tv, &ta));
6413ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
642ca3d3a14SMatthew G. Knepley }
643ca3d3a14SMatthew G. Knepley 
644d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexBasisTransformFieldTensor_Internal(DM dm, DM tdm, Vec tv, PetscInt pf, PetscInt f, PetscInt pg, PetscInt g, PetscBool l2g, PetscInt lda, PetscScalar *a)
645d71ae5a4SJacob Faibussowitsch {
646ca3d3a14SMatthew G. Knepley   PetscSection       s, ts;
647ca3d3a14SMatthew G. Knepley   const PetscScalar *ta, *tvaf, *tvag;
648ca3d3a14SMatthew G. Knepley   PetscInt           fdof, gdof, fpdof, gpdof;
649ca3d3a14SMatthew G. Knepley 
650ca3d3a14SMatthew G. Knepley   PetscFunctionBeginHot;
6519566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dm, &s));
6529566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(tdm, &ts));
6539566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetFieldDof(s, pf, f, &fpdof));
6549566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetFieldDof(s, pg, g, &gpdof));
6559566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetFieldDof(ts, pf, f, &fdof));
6569566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetFieldDof(ts, pg, g, &gdof));
6579566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(tv, &ta));
6589566063dSJacob Faibussowitsch   PetscCall(DMPlexPointLocalFieldRead(tdm, pf, f, ta, &tvaf));
6599566063dSJacob Faibussowitsch   PetscCall(DMPlexPointLocalFieldRead(tdm, pg, g, ta, &tvag));
660ca3d3a14SMatthew G. Knepley   if (l2g) {
661ca3d3a14SMatthew G. Knepley     switch (fdof) {
662d71ae5a4SJacob Faibussowitsch     case 4:
663d71ae5a4SJacob Faibussowitsch       DMPlex_MatMult2D_Internal(tvaf, gpdof, lda, a, a);
664d71ae5a4SJacob Faibussowitsch       break;
665d71ae5a4SJacob Faibussowitsch     case 9:
666d71ae5a4SJacob Faibussowitsch       DMPlex_MatMult3D_Internal(tvaf, gpdof, lda, a, a);
667d71ae5a4SJacob Faibussowitsch       break;
668ca3d3a14SMatthew G. Knepley     }
669ca3d3a14SMatthew G. Knepley     switch (gdof) {
670d71ae5a4SJacob Faibussowitsch     case 4:
671d71ae5a4SJacob Faibussowitsch       DMPlex_MatMultTransposeLeft2D_Internal(tvag, fpdof, lda, a, a);
672d71ae5a4SJacob Faibussowitsch       break;
673d71ae5a4SJacob Faibussowitsch     case 9:
674d71ae5a4SJacob Faibussowitsch       DMPlex_MatMultTransposeLeft3D_Internal(tvag, fpdof, lda, a, a);
675d71ae5a4SJacob Faibussowitsch       break;
676ca3d3a14SMatthew G. Knepley     }
677ca3d3a14SMatthew G. Knepley   } else {
678ca3d3a14SMatthew G. Knepley     switch (fdof) {
679d71ae5a4SJacob Faibussowitsch     case 4:
680d71ae5a4SJacob Faibussowitsch       DMPlex_MatMultTranspose2D_Internal(tvaf, gpdof, lda, a, a);
681d71ae5a4SJacob Faibussowitsch       break;
682d71ae5a4SJacob Faibussowitsch     case 9:
683d71ae5a4SJacob Faibussowitsch       DMPlex_MatMultTranspose3D_Internal(tvaf, gpdof, lda, a, a);
684d71ae5a4SJacob Faibussowitsch       break;
685ca3d3a14SMatthew G. Knepley     }
686ca3d3a14SMatthew G. Knepley     switch (gdof) {
687d71ae5a4SJacob Faibussowitsch     case 4:
688d71ae5a4SJacob Faibussowitsch       DMPlex_MatMultLeft2D_Internal(tvag, fpdof, lda, a, a);
689d71ae5a4SJacob Faibussowitsch       break;
690d71ae5a4SJacob Faibussowitsch     case 9:
691d71ae5a4SJacob Faibussowitsch       DMPlex_MatMultLeft3D_Internal(tvag, fpdof, lda, a, a);
692d71ae5a4SJacob Faibussowitsch       break;
693ca3d3a14SMatthew G. Knepley     }
694ca3d3a14SMatthew G. Knepley   }
6959566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(tv, &ta));
6963ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
697ca3d3a14SMatthew G. Knepley }
698ca3d3a14SMatthew G. Knepley 
699d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexBasisTransformPoint_Internal(DM dm, DM tdm, Vec tv, PetscInt p, PetscBool fieldActive[], PetscBool l2g, PetscScalar *a)
700d71ae5a4SJacob Faibussowitsch {
701ca3d3a14SMatthew G. Knepley   PetscSection    s;
702ca3d3a14SMatthew G. Knepley   PetscSection    clSection;
703ca3d3a14SMatthew G. Knepley   IS              clPoints;
704ca3d3a14SMatthew G. Knepley   const PetscInt *clp;
705ca3d3a14SMatthew G. Knepley   PetscInt       *points = NULL;
706ca3d3a14SMatthew G. Knepley   PetscInt        Nf, f, Np, cp, dof, d = 0;
707ca3d3a14SMatthew G. Knepley 
708ca3d3a14SMatthew G. Knepley   PetscFunctionBegin;
7099566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dm, &s));
7109566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetNumFields(s, &Nf));
71107218a29SMatthew G. Knepley   PetscCall(DMPlexGetCompressedClosure(dm, s, p, 0, &Np, &points, &clSection, &clPoints, &clp));
712ca3d3a14SMatthew G. Knepley   for (f = 0; f < Nf; ++f) {
713ca3d3a14SMatthew G. Knepley     for (cp = 0; cp < Np * 2; cp += 2) {
7149566063dSJacob Faibussowitsch       PetscCall(PetscSectionGetFieldDof(s, points[cp], f, &dof));
715ca3d3a14SMatthew G. Knepley       if (!dof) continue;
7169566063dSJacob Faibussowitsch       if (fieldActive[f]) PetscCall(DMPlexBasisTransformField_Internal(dm, tdm, tv, points[cp], f, l2g, &a[d]));
717ca3d3a14SMatthew G. Knepley       d += dof;
718ca3d3a14SMatthew G. Knepley     }
719ca3d3a14SMatthew G. Knepley   }
7209566063dSJacob Faibussowitsch   PetscCall(DMPlexRestoreCompressedClosure(dm, s, p, &Np, &points, &clSection, &clPoints, &clp));
7213ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
722ca3d3a14SMatthew G. Knepley }
723ca3d3a14SMatthew G. Knepley 
724d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexBasisTransformPointTensor_Internal(DM dm, DM tdm, Vec tv, PetscInt p, PetscBool l2g, PetscInt lda, PetscScalar *a)
725d71ae5a4SJacob Faibussowitsch {
726ca3d3a14SMatthew G. Knepley   PetscSection    s;
727ca3d3a14SMatthew G. Knepley   PetscSection    clSection;
728ca3d3a14SMatthew G. Knepley   IS              clPoints;
729ca3d3a14SMatthew G. Knepley   const PetscInt *clp;
730ca3d3a14SMatthew G. Knepley   PetscInt       *points = NULL;
7318bdb3c71SMatthew G. Knepley   PetscInt        Nf, f, g, Np, cpf, cpg, fdof, gdof, r, c = 0;
732ca3d3a14SMatthew G. Knepley 
733ca3d3a14SMatthew G. Knepley   PetscFunctionBegin;
7349566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dm, &s));
7359566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetNumFields(s, &Nf));
73607218a29SMatthew G. Knepley   PetscCall(DMPlexGetCompressedClosure(dm, s, p, 0, &Np, &points, &clSection, &clPoints, &clp));
737ca3d3a14SMatthew G. Knepley   for (f = 0, r = 0; f < Nf; ++f) {
738ca3d3a14SMatthew G. Knepley     for (cpf = 0; cpf < Np * 2; cpf += 2) {
7399566063dSJacob Faibussowitsch       PetscCall(PetscSectionGetFieldDof(s, points[cpf], f, &fdof));
740ca3d3a14SMatthew G. Knepley       for (g = 0, c = 0; g < Nf; ++g) {
741ca3d3a14SMatthew G. Knepley         for (cpg = 0; cpg < Np * 2; cpg += 2) {
7429566063dSJacob Faibussowitsch           PetscCall(PetscSectionGetFieldDof(s, points[cpg], g, &gdof));
7439566063dSJacob Faibussowitsch           PetscCall(DMPlexBasisTransformFieldTensor_Internal(dm, tdm, tv, points[cpf], f, points[cpg], g, l2g, lda, &a[r * lda + c]));
744ca3d3a14SMatthew G. Knepley           c += gdof;
745ca3d3a14SMatthew G. Knepley         }
746ca3d3a14SMatthew G. Knepley       }
74763a3b9bcSJacob Faibussowitsch       PetscCheck(c == lda, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid number of columns %" PetscInt_FMT " should be %" PetscInt_FMT, c, lda);
748ca3d3a14SMatthew G. Knepley       r += fdof;
749ca3d3a14SMatthew G. Knepley     }
750ca3d3a14SMatthew G. Knepley   }
75163a3b9bcSJacob Faibussowitsch   PetscCheck(r == lda, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid number of rows %" PetscInt_FMT " should be %" PetscInt_FMT, c, lda);
7529566063dSJacob Faibussowitsch   PetscCall(DMPlexRestoreCompressedClosure(dm, s, p, &Np, &points, &clSection, &clPoints, &clp));
7533ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
754ca3d3a14SMatthew G. Knepley }
755ca3d3a14SMatthew G. Knepley 
756d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexBasisTransform_Internal(DM dm, Vec lv, PetscBool l2g)
757d71ae5a4SJacob Faibussowitsch {
758ca3d3a14SMatthew G. Knepley   DM                 tdm;
759ca3d3a14SMatthew G. Knepley   Vec                tv;
760ca3d3a14SMatthew G. Knepley   PetscSection       ts, s;
761ca3d3a14SMatthew G. Knepley   const PetscScalar *ta;
762ca3d3a14SMatthew G. Knepley   PetscScalar       *a, *va;
763ca3d3a14SMatthew G. Knepley   PetscInt           pStart, pEnd, p, Nf, f;
764ca3d3a14SMatthew G. Knepley 
765ca3d3a14SMatthew G. Knepley   PetscFunctionBegin;
7669566063dSJacob Faibussowitsch   PetscCall(DMGetBasisTransformDM_Internal(dm, &tdm));
7679566063dSJacob Faibussowitsch   PetscCall(DMGetBasisTransformVec_Internal(dm, &tv));
7689566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(tdm, &ts));
7699566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dm, &s));
7709566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetChart(s, &pStart, &pEnd));
7719566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetNumFields(s, &Nf));
7729566063dSJacob Faibussowitsch   PetscCall(VecGetArray(lv, &a));
7739566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(tv, &ta));
774ca3d3a14SMatthew G. Knepley   for (p = pStart; p < pEnd; ++p) {
775ca3d3a14SMatthew G. Knepley     for (f = 0; f < Nf; ++f) {
7769566063dSJacob Faibussowitsch       PetscCall(DMPlexPointLocalFieldRef(dm, p, f, a, &va));
7779566063dSJacob Faibussowitsch       PetscCall(DMPlexBasisTransformField_Internal(dm, tdm, tv, p, f, l2g, va));
778ca3d3a14SMatthew G. Knepley     }
779ca3d3a14SMatthew G. Knepley   }
7809566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(lv, &a));
7819566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(tv, &ta));
7823ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
783ca3d3a14SMatthew G. Knepley }
784ca3d3a14SMatthew G. Knepley 
785ca3d3a14SMatthew G. Knepley /*@
786ca3d3a14SMatthew G. Knepley   DMPlexGlobalToLocalBasis - Transform the values in the given local vector from the global basis to the local basis
787ca3d3a14SMatthew G. Knepley 
788ca3d3a14SMatthew G. Knepley   Input Parameters:
789a1cb98faSBarry Smith + dm - The `DM`
790ca3d3a14SMatthew G. Knepley - lv - A local vector with values in the global basis
791ca3d3a14SMatthew G. Knepley 
7922fe279fdSBarry Smith   Output Parameter:
793ca3d3a14SMatthew G. Knepley . lv - A local vector with values in the local basis
794ca3d3a14SMatthew G. Knepley 
795ca3d3a14SMatthew G. Knepley   Level: developer
796ca3d3a14SMatthew G. Knepley 
797a1cb98faSBarry Smith   Note:
798a1cb98faSBarry Smith   This method is only intended to be called inside `DMGlobalToLocal()`. It is unlikely that a user will have a local vector full of coefficients for the global basis unless they are reimplementing GlobalToLocal.
799a1cb98faSBarry Smith 
8001cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexLocalToGlobalBasis()`, `DMGetLocalSection()`, `DMPlexCreateBasisRotation()`
801ca3d3a14SMatthew G. Knepley @*/
802d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexGlobalToLocalBasis(DM dm, Vec lv)
803d71ae5a4SJacob Faibussowitsch {
804ca3d3a14SMatthew G. Knepley   PetscFunctionBegin;
805ca3d3a14SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
806ca3d3a14SMatthew G. Knepley   PetscValidHeaderSpecific(lv, VEC_CLASSID, 2);
8079566063dSJacob Faibussowitsch   PetscCall(DMPlexBasisTransform_Internal(dm, lv, PETSC_FALSE));
8083ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
809ca3d3a14SMatthew G. Knepley }
810ca3d3a14SMatthew G. Knepley 
811ca3d3a14SMatthew G. Knepley /*@
812ca3d3a14SMatthew G. Knepley   DMPlexLocalToGlobalBasis - Transform the values in the given local vector from the local basis to the global basis
813ca3d3a14SMatthew G. Knepley 
814ca3d3a14SMatthew G. Knepley   Input Parameters:
815a1cb98faSBarry Smith + dm - The `DM`
816ca3d3a14SMatthew G. Knepley - lv - A local vector with values in the local basis
817ca3d3a14SMatthew G. Knepley 
8182fe279fdSBarry Smith   Output Parameter:
819ca3d3a14SMatthew G. Knepley . lv - A local vector with values in the global basis
820ca3d3a14SMatthew G. Knepley 
821ca3d3a14SMatthew G. Knepley   Level: developer
822ca3d3a14SMatthew G. Knepley 
823a1cb98faSBarry Smith   Note:
824a1cb98faSBarry Smith   This method is only intended to be called inside `DMGlobalToLocal()`. It is unlikely that a user would want a local vector full of coefficients for the global basis unless they are reimplementing GlobalToLocal.
825a1cb98faSBarry Smith 
8261cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexGlobalToLocalBasis()`, `DMGetLocalSection()`, `DMPlexCreateBasisRotation()`
827ca3d3a14SMatthew G. Knepley @*/
828d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexLocalToGlobalBasis(DM dm, Vec lv)
829d71ae5a4SJacob Faibussowitsch {
830ca3d3a14SMatthew G. Knepley   PetscFunctionBegin;
831ca3d3a14SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
832ca3d3a14SMatthew G. Knepley   PetscValidHeaderSpecific(lv, VEC_CLASSID, 2);
8339566063dSJacob Faibussowitsch   PetscCall(DMPlexBasisTransform_Internal(dm, lv, PETSC_TRUE));
8343ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
835ca3d3a14SMatthew G. Knepley }
836ca3d3a14SMatthew G. Knepley 
837ca3d3a14SMatthew G. Knepley /*@
838ca3d3a14SMatthew G. Knepley   DMPlexCreateBasisRotation - Create an internal transformation from the global basis, used to specify boundary conditions
839ca3d3a14SMatthew G. Knepley   and global solutions, to a local basis, appropriate for discretization integrals and assembly.
840ca3d3a14SMatthew G. Knepley 
841ca3d3a14SMatthew G. Knepley   Input Parameters:
842a1cb98faSBarry Smith + dm    - The `DM`
843ca3d3a14SMatthew G. Knepley . alpha - The first Euler angle, and in 2D the only one
844ca3d3a14SMatthew G. Knepley . beta  - The second Euler angle
845f0fc11ceSJed Brown - gamma - The third Euler angle
846ca3d3a14SMatthew G. Knepley 
847ca3d3a14SMatthew G. Knepley   Level: developer
848ca3d3a14SMatthew G. Knepley 
849a1cb98faSBarry Smith   Note:
850a1cb98faSBarry Smith   Following https://en.wikipedia.org/wiki/Euler_angles, we will specify Euler angles by extrinsic rotations, meaning that
851a1cb98faSBarry Smith   we rotate with respect to a fixed initial coordinate system, the local basis (x-y-z). The global basis (X-Y-Z) is reached as follows
852a1cb98faSBarry Smith .vb
853a1cb98faSBarry Smith    The XYZ system rotates about the z axis by alpha. The X axis is now at angle alpha with respect to the x axis.
854a1cb98faSBarry Smith    The XYZ system rotates again about the x axis by beta. The Z axis is now at angle beta with respect to the z axis.
855a1cb98faSBarry Smith    The XYZ system rotates a third time about the z axis by gamma.
856a1cb98faSBarry Smith .ve
857a1cb98faSBarry Smith 
8581cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexGlobalToLocalBasis()`, `DMPlexLocalToGlobalBasis()`
859ca3d3a14SMatthew G. Knepley @*/
860d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexCreateBasisRotation(DM dm, PetscReal alpha, PetscReal beta, PetscReal gamma)
861d71ae5a4SJacob Faibussowitsch {
862ca3d3a14SMatthew G. Knepley   RotCtx  *rc;
863ca3d3a14SMatthew G. Knepley   PetscInt cdim;
864ca3d3a14SMatthew G. Knepley 
865362febeeSStefano Zampini   PetscFunctionBegin;
8669566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateDim(dm, &cdim));
8679566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(1, &rc));
868ca3d3a14SMatthew G. Knepley   dm->transformCtx       = rc;
869ca3d3a14SMatthew G. Knepley   dm->transformSetUp     = DMPlexBasisTransformSetUp_Rotation_Internal;
870ca3d3a14SMatthew G. Knepley   dm->transformDestroy   = DMPlexBasisTransformDestroy_Rotation_Internal;
871ca3d3a14SMatthew G. Knepley   dm->transformGetMatrix = DMPlexBasisTransformGetMatrix_Rotation_Internal;
872ca3d3a14SMatthew G. Knepley   rc->dim                = cdim;
873ca3d3a14SMatthew G. Knepley   rc->alpha              = alpha;
874ca3d3a14SMatthew G. Knepley   rc->beta               = beta;
875ca3d3a14SMatthew G. Knepley   rc->gamma              = gamma;
8769566063dSJacob Faibussowitsch   PetscCall((*dm->transformSetUp)(dm, dm->transformCtx));
8779566063dSJacob Faibussowitsch   PetscCall(DMConstructBasisTransform_Internal(dm));
8783ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
879ca3d3a14SMatthew G. Knepley }
880ca3d3a14SMatthew G. Knepley 
881b278463cSMatthew G. Knepley /*@C
882ece3a9fcSMatthew G. Knepley   DMPlexInsertBoundaryValuesEssential - Insert boundary values into a local vector using a function of the coordinates
883b278463cSMatthew G. Knepley 
884b278463cSMatthew G. Knepley   Input Parameters:
885a1cb98faSBarry Smith + dm     - The `DM`, with a `PetscDS` that matches the problem being constrained
886b278463cSMatthew G. Knepley . time   - The time
887b278463cSMatthew G. Knepley . field  - The field to constrain
8881c531cf8SMatthew G. Knepley . Nc     - The number of constrained field components, or 0 for all components
88920f4b53cSBarry Smith . comps  - An array of constrained component numbers, or `NULL` for all components
890a1cb98faSBarry Smith . label  - The `DMLabel` defining constrained points
891a1cb98faSBarry Smith . numids - The number of `DMLabel` ids for constrained points
892b278463cSMatthew G. Knepley . ids    - An array of ids for constrained points
893b278463cSMatthew G. Knepley . func   - A pointwise function giving boundary values
894b278463cSMatthew G. Knepley - ctx    - An optional user context for bcFunc
895b278463cSMatthew G. Knepley 
896b278463cSMatthew G. Knepley   Output Parameter:
897b278463cSMatthew G. Knepley . locX - A local vector to receives the boundary values
898b278463cSMatthew G. Knepley 
899b278463cSMatthew G. Knepley   Level: developer
900b278463cSMatthew G. Knepley 
9011cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMLabel`, `DMPlexInsertBoundaryValuesEssentialField()`, `DMPlexInsertBoundaryValuesEssentialBdField()`, `DMAddBoundary()`
902b278463cSMatthew G. Knepley @*/
903d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexInsertBoundaryValuesEssential(DM dm, PetscReal time, PetscInt field, PetscInt Nc, const PetscInt comps[], DMLabel label, PetscInt numids, const PetscInt ids[], PetscErrorCode (*func)(PetscInt, PetscReal, const PetscReal[], PetscInt, PetscScalar *, void *), void *ctx, Vec locX)
904d71ae5a4SJacob Faibussowitsch {
9050163fd50SMatthew G. Knepley   PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal x[], PetscInt, PetscScalar *u, void *ctx);
90655f2e967SMatthew G. Knepley   void   **ctxs;
907d7ddef95SMatthew G. Knepley   PetscInt numFields;
908d7ddef95SMatthew G. Knepley 
909d7ddef95SMatthew G. Knepley   PetscFunctionBegin;
9109566063dSJacob Faibussowitsch   PetscCall(DMGetNumFields(dm, &numFields));
9119566063dSJacob Faibussowitsch   PetscCall(PetscCalloc2(numFields, &funcs, numFields, &ctxs));
912d7ddef95SMatthew G. Knepley   funcs[field] = func;
913d7ddef95SMatthew G. Knepley   ctxs[field]  = ctx;
9149566063dSJacob Faibussowitsch   PetscCall(DMProjectFunctionLabelLocal(dm, time, label, numids, ids, Nc, comps, funcs, ctxs, INSERT_BC_VALUES, locX));
9159566063dSJacob Faibussowitsch   PetscCall(PetscFree2(funcs, ctxs));
9163ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
917d7ddef95SMatthew G. Knepley }
918d7ddef95SMatthew G. Knepley 
919b278463cSMatthew G. Knepley /*@C
920ece3a9fcSMatthew G. Knepley   DMPlexInsertBoundaryValuesEssentialField - Insert boundary values into a local vector using a function of the coordinates and field data
921b278463cSMatthew G. Knepley 
922b278463cSMatthew G. Knepley   Input Parameters:
923a1cb98faSBarry Smith + dm     - The `DM`, with a `PetscDS` that matches the problem being constrained
924b278463cSMatthew G. Knepley . time   - The time
925b278463cSMatthew G. Knepley . locU   - A local vector with the input solution values
926b278463cSMatthew G. Knepley . field  - The field to constrain
9271c531cf8SMatthew G. Knepley . Nc     - The number of constrained field components, or 0 for all components
92820f4b53cSBarry Smith . comps  - An array of constrained component numbers, or `NULL` for all components
929a1cb98faSBarry Smith . label  - The `DMLabel` defining constrained points
930a1cb98faSBarry Smith . numids - The number of `DMLabel` ids for constrained points
931b278463cSMatthew G. Knepley . ids    - An array of ids for constrained points
932b278463cSMatthew G. Knepley . func   - A pointwise function giving boundary values
933b278463cSMatthew G. Knepley - ctx    - An optional user context for bcFunc
934b278463cSMatthew G. Knepley 
935b278463cSMatthew G. Knepley   Output Parameter:
936b278463cSMatthew G. Knepley . locX - A local vector to receives the boundary values
937b278463cSMatthew G. Knepley 
938b278463cSMatthew G. Knepley   Level: developer
939b278463cSMatthew G. Knepley 
9401cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexInsertBoundaryValuesEssential()`, `DMPlexInsertBoundaryValuesEssentialBdField()`, `DMAddBoundary()`
941b278463cSMatthew G. Knepley @*/
942d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexInsertBoundaryValuesEssentialField(DM dm, PetscReal time, Vec locU, PetscInt field, PetscInt Nc, const PetscInt comps[], DMLabel label, PetscInt numids, const PetscInt ids[], void (*func)(PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], PetscReal, const PetscReal[], PetscInt, const PetscScalar[], PetscScalar[]), void *ctx, Vec locX)
943d71ae5a4SJacob Faibussowitsch {
9449371c9d4SSatish Balay   void (**funcs)(PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], PetscReal, const PetscReal[], PetscInt, const PetscScalar[], PetscScalar[]);
945c60e475cSMatthew G. Knepley   void   **ctxs;
946c60e475cSMatthew G. Knepley   PetscInt numFields;
947c60e475cSMatthew G. Knepley 
948c60e475cSMatthew G. Knepley   PetscFunctionBegin;
9499566063dSJacob Faibussowitsch   PetscCall(DMGetNumFields(dm, &numFields));
9509566063dSJacob Faibussowitsch   PetscCall(PetscCalloc2(numFields, &funcs, numFields, &ctxs));
951c60e475cSMatthew G. Knepley   funcs[field] = func;
952c60e475cSMatthew G. Knepley   ctxs[field]  = ctx;
9539566063dSJacob Faibussowitsch   PetscCall(DMProjectFieldLabelLocal(dm, time, label, numids, ids, Nc, comps, locU, funcs, INSERT_BC_VALUES, locX));
9549566063dSJacob Faibussowitsch   PetscCall(PetscFree2(funcs, ctxs));
9553ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
956c60e475cSMatthew G. Knepley }
957c60e475cSMatthew G. Knepley 
958b278463cSMatthew G. Knepley /*@C
959d5b43468SJose E. Roman   DMPlexInsertBoundaryValuesEssentialBdField - Insert boundary values into a local vector using a function of the coordinates and boundary field data
960ece3a9fcSMatthew G. Knepley 
96120f4b53cSBarry Smith   Collective
962ece3a9fcSMatthew G. Knepley 
963ece3a9fcSMatthew G. Knepley   Input Parameters:
964a1cb98faSBarry Smith + dm     - The `DM`, with a `PetscDS` that matches the problem being constrained
965ece3a9fcSMatthew G. Knepley . time   - The time
966ece3a9fcSMatthew G. Knepley . locU   - A local vector with the input solution values
967ece3a9fcSMatthew G. Knepley . field  - The field to constrain
968ece3a9fcSMatthew G. Knepley . Nc     - The number of constrained field components, or 0 for all components
96920f4b53cSBarry Smith . comps  - An array of constrained component numbers, or `NULL` for all components
970a1cb98faSBarry Smith . label  - The `DMLabel` defining constrained points
971a1cb98faSBarry Smith . numids - The number of `DMLabel` ids for constrained points
972ece3a9fcSMatthew G. Knepley . ids    - An array of ids for constrained points
97320f4b53cSBarry Smith . func   - A pointwise function giving boundary values, the calling sequence is given in `DMProjectBdFieldLabelLocal()`
97420f4b53cSBarry Smith - ctx    - An optional user context for `func`
975ece3a9fcSMatthew G. Knepley 
976ece3a9fcSMatthew G. Knepley   Output Parameter:
977ece3a9fcSMatthew G. Knepley . locX - A local vector to receive the boundary values
978ece3a9fcSMatthew G. Knepley 
979ece3a9fcSMatthew G. Knepley   Level: developer
980ece3a9fcSMatthew G. Knepley 
9811cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMProjectBdFieldLabelLocal()`, `DMPlexInsertBoundaryValuesEssential()`, `DMPlexInsertBoundaryValuesEssentialField()`, `DMAddBoundary()`
982ece3a9fcSMatthew G. Knepley @*/
983d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexInsertBoundaryValuesEssentialBdField(DM dm, PetscReal time, Vec locU, PetscInt field, PetscInt Nc, const PetscInt comps[], DMLabel label, PetscInt numids, const PetscInt ids[], void (*func)(PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], PetscReal, const PetscReal[], const PetscReal[], PetscInt, const PetscScalar[], PetscScalar[]), void *ctx, Vec locX)
984d71ae5a4SJacob Faibussowitsch {
9859371c9d4SSatish Balay   void (**funcs)(PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], PetscReal, const PetscReal[], const PetscReal[], PetscInt, const PetscScalar[], PetscScalar[]);
986ece3a9fcSMatthew G. Knepley   void   **ctxs;
987ece3a9fcSMatthew G. Knepley   PetscInt numFields;
988ece3a9fcSMatthew G. Knepley 
989ece3a9fcSMatthew G. Knepley   PetscFunctionBegin;
9909566063dSJacob Faibussowitsch   PetscCall(DMGetNumFields(dm, &numFields));
9919566063dSJacob Faibussowitsch   PetscCall(PetscCalloc2(numFields, &funcs, numFields, &ctxs));
992ece3a9fcSMatthew G. Knepley   funcs[field] = func;
993ece3a9fcSMatthew G. Knepley   ctxs[field]  = ctx;
9949566063dSJacob Faibussowitsch   PetscCall(DMProjectBdFieldLabelLocal(dm, time, label, numids, ids, Nc, comps, locU, funcs, INSERT_BC_VALUES, locX));
9959566063dSJacob Faibussowitsch   PetscCall(PetscFree2(funcs, ctxs));
9963ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
997ece3a9fcSMatthew G. Knepley }
998ece3a9fcSMatthew G. Knepley 
999ece3a9fcSMatthew G. Knepley /*@C
1000b278463cSMatthew G. Knepley   DMPlexInsertBoundaryValuesRiemann - Insert boundary values into a local vector
1001b278463cSMatthew G. Knepley 
1002b278463cSMatthew G. Knepley   Input Parameters:
1003a1cb98faSBarry Smith + dm           - The `DM`, with a `PetscDS` that matches the problem being constrained
1004b278463cSMatthew G. Knepley . time         - The time
1005b278463cSMatthew G. Knepley . faceGeometry - A vector with the FVM face geometry information
1006b278463cSMatthew G. Knepley . cellGeometry - A vector with the FVM cell geometry information
1007b278463cSMatthew G. Knepley . Grad         - A vector with the FVM cell gradient information
1008b278463cSMatthew G. Knepley . field        - The field to constrain
10091c531cf8SMatthew G. Knepley . Nc           - The number of constrained field components, or 0 for all components
101020f4b53cSBarry Smith . comps        - An array of constrained component numbers, or `NULL` for all components
1011a1cb98faSBarry Smith . label        - The `DMLabel` defining constrained points
1012a1cb98faSBarry Smith . numids       - The number of `DMLabel` ids for constrained points
1013b278463cSMatthew G. Knepley . ids          - An array of ids for constrained points
1014b278463cSMatthew G. Knepley . func         - A pointwise function giving boundary values
1015b278463cSMatthew G. Knepley - ctx          - An optional user context for bcFunc
1016b278463cSMatthew G. Knepley 
1017b278463cSMatthew G. Knepley   Output Parameter:
1018b278463cSMatthew G. Knepley . locX - A local vector to receives the boundary values
1019b278463cSMatthew G. Knepley 
1020b278463cSMatthew G. Knepley   Level: developer
1021b278463cSMatthew G. Knepley 
1022a1cb98faSBarry Smith   Note:
1023a1cb98faSBarry Smith   This implementation currently ignores the numcomps/comps argument from `DMAddBoundary()`
1024a1cb98faSBarry Smith 
10251cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexInsertBoundaryValuesEssential()`, `DMPlexInsertBoundaryValuesEssentialField()`, `DMAddBoundary()`
1026b278463cSMatthew G. Knepley @*/
1027d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexInsertBoundaryValuesRiemann(DM dm, PetscReal time, Vec faceGeometry, Vec cellGeometry, Vec Grad, PetscInt field, PetscInt Nc, const PetscInt comps[], DMLabel label, PetscInt numids, const PetscInt ids[], PetscErrorCode (*func)(PetscReal, const PetscReal *, const PetscReal *, const PetscScalar *, PetscScalar *, void *), void *ctx, Vec locX)
1028d71ae5a4SJacob Faibussowitsch {
102961f58d28SMatthew G. Knepley   PetscDS            prob;
1030da97024aSMatthew G. Knepley   PetscSF            sf;
1031d7ddef95SMatthew G. Knepley   DM                 dmFace, dmCell, dmGrad;
103220369375SToby Isaac   const PetscScalar *facegeom, *cellgeom = NULL, *grad;
1033da97024aSMatthew G. Knepley   const PetscInt    *leaves;
1034d7ddef95SMatthew G. Knepley   PetscScalar       *x, *fx;
1035520b3818SMatthew G. Knepley   PetscInt           dim, nleaves, loc, fStart, fEnd, pdim, i;
10363ba16761SJacob Faibussowitsch   PetscErrorCode     ierru = PETSC_SUCCESS;
1037d7ddef95SMatthew G. Knepley 
1038d7ddef95SMatthew G. Knepley   PetscFunctionBegin;
10399566063dSJacob Faibussowitsch   PetscCall(DMGetPointSF(dm, &sf));
10409566063dSJacob Faibussowitsch   PetscCall(PetscSFGetGraph(sf, NULL, &nleaves, &leaves, NULL));
1041da97024aSMatthew G. Knepley   nleaves = PetscMax(0, nleaves);
10429566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dm, &dim));
10439566063dSJacob Faibussowitsch   PetscCall(DMPlexGetHeightStratum(dm, 1, &fStart, &fEnd));
10449566063dSJacob Faibussowitsch   PetscCall(DMGetDS(dm, &prob));
10459566063dSJacob Faibussowitsch   PetscCall(VecGetDM(faceGeometry, &dmFace));
10469566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(faceGeometry, &facegeom));
104720369375SToby Isaac   if (cellGeometry) {
10489566063dSJacob Faibussowitsch     PetscCall(VecGetDM(cellGeometry, &dmCell));
10499566063dSJacob Faibussowitsch     PetscCall(VecGetArrayRead(cellGeometry, &cellgeom));
105020369375SToby Isaac   }
1051d7ddef95SMatthew G. Knepley   if (Grad) {
1052c0a6632aSMatthew G. Knepley     PetscFV fv;
1053c0a6632aSMatthew G. Knepley 
10549566063dSJacob Faibussowitsch     PetscCall(PetscDSGetDiscretization(prob, field, (PetscObject *)&fv));
10559566063dSJacob Faibussowitsch     PetscCall(VecGetDM(Grad, &dmGrad));
10569566063dSJacob Faibussowitsch     PetscCall(VecGetArrayRead(Grad, &grad));
10579566063dSJacob Faibussowitsch     PetscCall(PetscFVGetNumComponents(fv, &pdim));
10589566063dSJacob Faibussowitsch     PetscCall(DMGetWorkArray(dm, pdim, MPIU_SCALAR, &fx));
1059d7ddef95SMatthew G. Knepley   }
10609566063dSJacob Faibussowitsch   PetscCall(VecGetArray(locX, &x));
1061d7ddef95SMatthew G. Knepley   for (i = 0; i < numids; ++i) {
1062d7ddef95SMatthew G. Knepley     IS              faceIS;
1063d7ddef95SMatthew G. Knepley     const PetscInt *faces;
1064d7ddef95SMatthew G. Knepley     PetscInt        numFaces, f;
1065d7ddef95SMatthew G. Knepley 
10669566063dSJacob Faibussowitsch     PetscCall(DMLabelGetStratumIS(label, ids[i], &faceIS));
1067d7ddef95SMatthew G. Knepley     if (!faceIS) continue; /* No points with that id on this process */
10689566063dSJacob Faibussowitsch     PetscCall(ISGetLocalSize(faceIS, &numFaces));
10699566063dSJacob Faibussowitsch     PetscCall(ISGetIndices(faceIS, &faces));
1070d7ddef95SMatthew G. Knepley     for (f = 0; f < numFaces; ++f) {
1071d7ddef95SMatthew G. Knepley       const PetscInt   face = faces[f], *cells;
1072640bce14SSatish Balay       PetscFVFaceGeom *fg;
1073d7ddef95SMatthew G. Knepley 
1074d7ddef95SMatthew G. Knepley       if ((face < fStart) || (face >= fEnd)) continue; /* Refinement adds non-faces to labels */
10759566063dSJacob Faibussowitsch       PetscCall(PetscFindInt(face, nleaves, (PetscInt *)leaves, &loc));
1076da97024aSMatthew G. Knepley       if (loc >= 0) continue;
10779566063dSJacob Faibussowitsch       PetscCall(DMPlexPointLocalRead(dmFace, face, facegeom, &fg));
10789566063dSJacob Faibussowitsch       PetscCall(DMPlexGetSupport(dm, face, &cells));
1079d7ddef95SMatthew G. Knepley       if (Grad) {
1080640bce14SSatish Balay         PetscFVCellGeom *cg;
1081640bce14SSatish Balay         PetscScalar     *cx, *cgrad;
1082d7ddef95SMatthew G. Knepley         PetscScalar     *xG;
1083d7ddef95SMatthew G. Knepley         PetscReal        dx[3];
1084d7ddef95SMatthew G. Knepley         PetscInt         d;
1085d7ddef95SMatthew G. Knepley 
10869566063dSJacob Faibussowitsch         PetscCall(DMPlexPointLocalRead(dmCell, cells[0], cellgeom, &cg));
10879566063dSJacob Faibussowitsch         PetscCall(DMPlexPointLocalRead(dm, cells[0], x, &cx));
10889566063dSJacob Faibussowitsch         PetscCall(DMPlexPointLocalRead(dmGrad, cells[0], grad, &cgrad));
10899566063dSJacob Faibussowitsch         PetscCall(DMPlexPointLocalFieldRef(dm, cells[1], field, x, &xG));
1090d7ddef95SMatthew G. Knepley         DMPlex_WaxpyD_Internal(dim, -1, cg->centroid, fg->centroid, dx);
1091d7ddef95SMatthew G. Knepley         for (d = 0; d < pdim; ++d) fx[d] = cx[d] + DMPlex_DotD_Internal(dim, &cgrad[d * dim], dx);
10929566063dSJacob Faibussowitsch         PetscCall((*func)(time, fg->centroid, fg->normal, fx, xG, ctx));
1093d7ddef95SMatthew G. Knepley       } else {
1094640bce14SSatish Balay         PetscScalar *xI;
1095d7ddef95SMatthew G. Knepley         PetscScalar *xG;
1096d7ddef95SMatthew G. Knepley 
10979566063dSJacob Faibussowitsch         PetscCall(DMPlexPointLocalRead(dm, cells[0], x, &xI));
10989566063dSJacob Faibussowitsch         PetscCall(DMPlexPointLocalFieldRef(dm, cells[1], field, x, &xG));
1099e735a8a9SMatthew G. Knepley         ierru = (*func)(time, fg->centroid, fg->normal, xI, xG, ctx);
1100e735a8a9SMatthew G. Knepley         if (ierru) {
11019566063dSJacob Faibussowitsch           PetscCall(ISRestoreIndices(faceIS, &faces));
11029566063dSJacob Faibussowitsch           PetscCall(ISDestroy(&faceIS));
1103e735a8a9SMatthew G. Knepley           goto cleanup;
1104e735a8a9SMatthew G. Knepley         }
1105d7ddef95SMatthew G. Knepley       }
1106d7ddef95SMatthew G. Knepley     }
11079566063dSJacob Faibussowitsch     PetscCall(ISRestoreIndices(faceIS, &faces));
11089566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&faceIS));
1109d7ddef95SMatthew G. Knepley   }
1110e735a8a9SMatthew G. Knepley cleanup:
11119566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(locX, &x));
1112d7ddef95SMatthew G. Knepley   if (Grad) {
11139566063dSJacob Faibussowitsch     PetscCall(DMRestoreWorkArray(dm, pdim, MPIU_SCALAR, &fx));
11149566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayRead(Grad, &grad));
1115d7ddef95SMatthew G. Knepley   }
11169566063dSJacob Faibussowitsch   if (cellGeometry) PetscCall(VecRestoreArrayRead(cellGeometry, &cellgeom));
11179566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(faceGeometry, &facegeom));
11189566063dSJacob Faibussowitsch   PetscCall(ierru);
11193ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1120d7ddef95SMatthew G. Knepley }
1121d7ddef95SMatthew G. Knepley 
1122d71ae5a4SJacob Faibussowitsch static PetscErrorCode zero(PetscInt dim, PetscReal time, const PetscReal x[], PetscInt Nc, PetscScalar *u, void *ctx)
1123d71ae5a4SJacob Faibussowitsch {
11240c364540SMatthew G. Knepley   PetscInt c;
11250c364540SMatthew G. Knepley   for (c = 0; c < Nc; ++c) u[c] = 0.0;
11263ba16761SJacob Faibussowitsch   return PETSC_SUCCESS;
11270c364540SMatthew G. Knepley }
11280c364540SMatthew G. Knepley 
1129d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexInsertBoundaryValues_Plex(DM dm, PetscBool insertEssential, Vec locX, PetscReal time, Vec faceGeomFVM, Vec cellGeomFVM, Vec gradFVM)
1130d71ae5a4SJacob Faibussowitsch {
11310c364540SMatthew G. Knepley   PetscObject isZero;
1132e5e52638SMatthew G. Knepley   PetscDS     prob;
1133d7ddef95SMatthew G. Knepley   PetscInt    numBd, b;
113455f2e967SMatthew G. Knepley 
113555f2e967SMatthew G. Knepley   PetscFunctionBegin;
11369566063dSJacob Faibussowitsch   PetscCall(DMGetDS(dm, &prob));
11379566063dSJacob Faibussowitsch   PetscCall(PetscDSGetNumBoundary(prob, &numBd));
11389566063dSJacob Faibussowitsch   PetscCall(PetscObjectQuery((PetscObject)locX, "__Vec_bc_zero__", &isZero));
113955f2e967SMatthew G. Knepley   for (b = 0; b < numBd; ++b) {
114045480ffeSMatthew G. Knepley     PetscWeakForm           wf;
1141f971fd6bSMatthew G. Knepley     DMBoundaryConditionType type;
114245480ffeSMatthew G. Knepley     const char             *name;
1143d7ddef95SMatthew G. Knepley     DMLabel                 label;
11441c531cf8SMatthew G. Knepley     PetscInt                field, Nc;
11451c531cf8SMatthew G. Knepley     const PetscInt         *comps;
1146d7ddef95SMatthew G. Knepley     PetscObject             obj;
1147d7ddef95SMatthew G. Knepley     PetscClassId            id;
114845480ffeSMatthew G. Knepley     void (*bvfunc)(void);
1149d7ddef95SMatthew G. Knepley     PetscInt        numids;
1150d7ddef95SMatthew G. Knepley     const PetscInt *ids;
115155f2e967SMatthew G. Knepley     void           *ctx;
115255f2e967SMatthew G. Knepley 
11539566063dSJacob Faibussowitsch     PetscCall(PetscDSGetBoundary(prob, b, &wf, &type, &name, &label, &numids, &ids, &field, &Nc, &comps, &bvfunc, NULL, &ctx));
1154f971fd6bSMatthew G. Knepley     if (insertEssential != (type & DM_BC_ESSENTIAL)) continue;
11559566063dSJacob Faibussowitsch     PetscCall(DMGetField(dm, field, NULL, &obj));
11569566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetClassId(obj, &id));
1157d7ddef95SMatthew G. Knepley     if (id == PETSCFE_CLASSID) {
1158c60e475cSMatthew G. Knepley       switch (type) {
1159c60e475cSMatthew G. Knepley         /* for FEM, there is no insertion to be done for non-essential boundary conditions */
11609371c9d4SSatish Balay       case DM_BC_ESSENTIAL: {
116145480ffeSMatthew G. Knepley         PetscSimplePointFunc func = (PetscSimplePointFunc)bvfunc;
116245480ffeSMatthew G. Knepley 
116345480ffeSMatthew G. Knepley         if (isZero) func = zero;
11649566063dSJacob Faibussowitsch         PetscCall(DMPlexLabelAddCells(dm, label));
11659566063dSJacob Faibussowitsch         PetscCall(DMPlexInsertBoundaryValuesEssential(dm, time, field, Nc, comps, label, numids, ids, func, ctx, locX));
11669566063dSJacob Faibussowitsch         PetscCall(DMPlexLabelClearCells(dm, label));
11679371c9d4SSatish Balay       } break;
11689371c9d4SSatish Balay       case DM_BC_ESSENTIAL_FIELD: {
116945480ffeSMatthew G. Knepley         PetscPointFunc func = (PetscPointFunc)bvfunc;
117045480ffeSMatthew G. Knepley 
11719566063dSJacob Faibussowitsch         PetscCall(DMPlexLabelAddCells(dm, label));
11729566063dSJacob Faibussowitsch         PetscCall(DMPlexInsertBoundaryValuesEssentialField(dm, time, locX, field, Nc, comps, label, numids, ids, func, ctx, locX));
11739566063dSJacob Faibussowitsch         PetscCall(DMPlexLabelClearCells(dm, label));
11749371c9d4SSatish Balay       } break;
1175d71ae5a4SJacob Faibussowitsch       default:
1176d71ae5a4SJacob Faibussowitsch         break;
1177c60e475cSMatthew G. Knepley       }
1178d7ddef95SMatthew G. Knepley     } else if (id == PETSCFV_CLASSID) {
117945480ffeSMatthew G. Knepley       {
118045480ffeSMatthew G. Knepley         PetscErrorCode (*func)(PetscReal, const PetscReal *, const PetscReal *, const PetscScalar *, PetscScalar *, void *) = (PetscErrorCode(*)(PetscReal, const PetscReal *, const PetscReal *, const PetscScalar *, PetscScalar *, void *))bvfunc;
118145480ffeSMatthew G. Knepley 
118243ea7facSMatthew G. Knepley         if (!faceGeomFVM) continue;
11839566063dSJacob Faibussowitsch         PetscCall(DMPlexInsertBoundaryValuesRiemann(dm, time, faceGeomFVM, cellGeomFVM, gradFVM, field, Nc, comps, label, numids, ids, func, ctx, locX));
118445480ffeSMatthew G. Knepley       }
118563a3b9bcSJacob Faibussowitsch     } else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, field);
118655f2e967SMatthew G. Knepley   }
11873ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
118855f2e967SMatthew G. Knepley }
118955f2e967SMatthew G. Knepley 
1190d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexInsertTimeDerivativeBoundaryValues_Plex(DM dm, PetscBool insertEssential, Vec locX, PetscReal time, Vec faceGeomFVM, Vec cellGeomFVM, Vec gradFVM)
1191d71ae5a4SJacob Faibussowitsch {
119256cf3b9cSMatthew G. Knepley   PetscObject isZero;
119356cf3b9cSMatthew G. Knepley   PetscDS     prob;
119456cf3b9cSMatthew G. Knepley   PetscInt    numBd, b;
119556cf3b9cSMatthew G. Knepley 
119656cf3b9cSMatthew G. Knepley   PetscFunctionBegin;
11973ba16761SJacob Faibussowitsch   if (!locX) PetscFunctionReturn(PETSC_SUCCESS);
11989566063dSJacob Faibussowitsch   PetscCall(DMGetDS(dm, &prob));
11999566063dSJacob Faibussowitsch   PetscCall(PetscDSGetNumBoundary(prob, &numBd));
12009566063dSJacob Faibussowitsch   PetscCall(PetscObjectQuery((PetscObject)locX, "__Vec_bc_zero__", &isZero));
120156cf3b9cSMatthew G. Knepley   for (b = 0; b < numBd; ++b) {
120245480ffeSMatthew G. Knepley     PetscWeakForm           wf;
120356cf3b9cSMatthew G. Knepley     DMBoundaryConditionType type;
120445480ffeSMatthew G. Knepley     const char             *name;
120556cf3b9cSMatthew G. Knepley     DMLabel                 label;
120656cf3b9cSMatthew G. Knepley     PetscInt                field, Nc;
120756cf3b9cSMatthew G. Knepley     const PetscInt         *comps;
120856cf3b9cSMatthew G. Knepley     PetscObject             obj;
120956cf3b9cSMatthew G. Knepley     PetscClassId            id;
121056cf3b9cSMatthew G. Knepley     PetscInt                numids;
121156cf3b9cSMatthew G. Knepley     const PetscInt         *ids;
121245480ffeSMatthew G. Knepley     void (*bvfunc)(void);
121356cf3b9cSMatthew G. Knepley     void *ctx;
121456cf3b9cSMatthew G. Knepley 
12159566063dSJacob Faibussowitsch     PetscCall(PetscDSGetBoundary(prob, b, &wf, &type, &name, &label, &numids, &ids, &field, &Nc, &comps, NULL, &bvfunc, &ctx));
121656cf3b9cSMatthew G. Knepley     if (insertEssential != (type & DM_BC_ESSENTIAL)) continue;
12179566063dSJacob Faibussowitsch     PetscCall(DMGetField(dm, field, NULL, &obj));
12189566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetClassId(obj, &id));
121956cf3b9cSMatthew G. Knepley     if (id == PETSCFE_CLASSID) {
122056cf3b9cSMatthew G. Knepley       switch (type) {
122156cf3b9cSMatthew G. Knepley         /* for FEM, there is no insertion to be done for non-essential boundary conditions */
12229371c9d4SSatish Balay       case DM_BC_ESSENTIAL: {
122345480ffeSMatthew G. Knepley         PetscSimplePointFunc func_t = (PetscSimplePointFunc)bvfunc;
122445480ffeSMatthew G. Knepley 
122545480ffeSMatthew G. Knepley         if (isZero) func_t = zero;
12269566063dSJacob Faibussowitsch         PetscCall(DMPlexLabelAddCells(dm, label));
12279566063dSJacob Faibussowitsch         PetscCall(DMPlexInsertBoundaryValuesEssential(dm, time, field, Nc, comps, label, numids, ids, func_t, ctx, locX));
12289566063dSJacob Faibussowitsch         PetscCall(DMPlexLabelClearCells(dm, label));
12299371c9d4SSatish Balay       } break;
12309371c9d4SSatish Balay       case DM_BC_ESSENTIAL_FIELD: {
123145480ffeSMatthew G. Knepley         PetscPointFunc func_t = (PetscPointFunc)bvfunc;
123245480ffeSMatthew G. Knepley 
12339566063dSJacob Faibussowitsch         PetscCall(DMPlexLabelAddCells(dm, label));
12349566063dSJacob Faibussowitsch         PetscCall(DMPlexInsertBoundaryValuesEssentialField(dm, time, locX, field, Nc, comps, label, numids, ids, func_t, ctx, locX));
12359566063dSJacob Faibussowitsch         PetscCall(DMPlexLabelClearCells(dm, label));
12369371c9d4SSatish Balay       } break;
1237d71ae5a4SJacob Faibussowitsch       default:
1238d71ae5a4SJacob Faibussowitsch         break;
123956cf3b9cSMatthew G. Knepley       }
124063a3b9bcSJacob Faibussowitsch     } else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, field);
124156cf3b9cSMatthew G. Knepley   }
12423ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
124356cf3b9cSMatthew G. Knepley }
124456cf3b9cSMatthew G. Knepley 
1245f1d73a7aSMatthew G. Knepley /*@
1246f1d73a7aSMatthew G. Knepley   DMPlexInsertBoundaryValues - Puts coefficients which represent boundary values into the local solution vector
1247f1d73a7aSMatthew G. Knepley 
1248ed808b8fSJed Brown   Not Collective
1249ed808b8fSJed Brown 
1250f1d73a7aSMatthew G. Knepley   Input Parameters:
1251a1cb98faSBarry Smith + dm              - The `DM`
1252f1d73a7aSMatthew G. Knepley . insertEssential - Should I insert essential (e.g. Dirichlet) or inessential (e.g. Neumann) boundary conditions
1253f1d73a7aSMatthew G. Knepley . time            - The time
1254f1d73a7aSMatthew G. Knepley . faceGeomFVM     - Face geometry data for FV discretizations
1255f1d73a7aSMatthew G. Knepley . cellGeomFVM     - Cell geometry data for FV discretizations
1256f1d73a7aSMatthew G. Knepley - gradFVM         - Gradient reconstruction data for FV discretizations
1257f1d73a7aSMatthew G. Knepley 
12582fe279fdSBarry Smith   Output Parameter:
1259f1d73a7aSMatthew G. Knepley . locX - Solution updated with boundary values
1260f1d73a7aSMatthew G. Knepley 
1261ed808b8fSJed Brown   Level: intermediate
1262f1d73a7aSMatthew G. Knepley 
12631cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMProjectFunctionLabelLocal()`, `DMAddBoundary()`
1264f1d73a7aSMatthew G. Knepley @*/
1265d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexInsertBoundaryValues(DM dm, PetscBool insertEssential, Vec locX, PetscReal time, Vec faceGeomFVM, Vec cellGeomFVM, Vec gradFVM)
1266d71ae5a4SJacob Faibussowitsch {
1267f1d73a7aSMatthew G. Knepley   PetscFunctionBegin;
1268f1d73a7aSMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
1269064a246eSJacob Faibussowitsch   PetscValidHeaderSpecific(locX, VEC_CLASSID, 3);
1270ad540459SPierre Jolivet   if (faceGeomFVM) PetscValidHeaderSpecific(faceGeomFVM, VEC_CLASSID, 5);
1271ad540459SPierre Jolivet   if (cellGeomFVM) PetscValidHeaderSpecific(cellGeomFVM, VEC_CLASSID, 6);
1272ad540459SPierre Jolivet   if (gradFVM) PetscValidHeaderSpecific(gradFVM, VEC_CLASSID, 7);
1273cac4c232SBarry Smith   PetscTryMethod(dm, "DMPlexInsertBoundaryValues_C", (DM, PetscBool, Vec, PetscReal, Vec, Vec, Vec), (dm, insertEssential, locX, time, faceGeomFVM, cellGeomFVM, gradFVM));
12743ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1275f1d73a7aSMatthew G. Knepley }
1276f1d73a7aSMatthew G. Knepley 
127756cf3b9cSMatthew G. Knepley /*@
1278a5b23f4aSJose E. Roman   DMPlexInsertTimeDerivativeBoundaryValues - Puts coefficients which represent boundary values of the time derivative into the local solution vector
127956cf3b9cSMatthew G. Knepley 
128056cf3b9cSMatthew G. Knepley   Input Parameters:
1281a1cb98faSBarry Smith + dm              - The `DM`
128256cf3b9cSMatthew G. Knepley . insertEssential - Should I insert essential (e.g. Dirichlet) or inessential (e.g. Neumann) boundary conditions
128356cf3b9cSMatthew G. Knepley . time            - The time
128456cf3b9cSMatthew G. Knepley . faceGeomFVM     - Face geometry data for FV discretizations
128556cf3b9cSMatthew G. Knepley . cellGeomFVM     - Cell geometry data for FV discretizations
128656cf3b9cSMatthew G. Knepley - gradFVM         - Gradient reconstruction data for FV discretizations
128756cf3b9cSMatthew G. Knepley 
12882fe279fdSBarry Smith   Output Parameter:
128956cf3b9cSMatthew G. Knepley . locX_t - Solution updated with boundary values
129056cf3b9cSMatthew G. Knepley 
129156cf3b9cSMatthew G. Knepley   Level: developer
129256cf3b9cSMatthew G. Knepley 
12931cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMProjectFunctionLabelLocal()`
129456cf3b9cSMatthew G. Knepley @*/
1295d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexInsertTimeDerivativeBoundaryValues(DM dm, PetscBool insertEssential, Vec locX_t, PetscReal time, Vec faceGeomFVM, Vec cellGeomFVM, Vec gradFVM)
1296d71ae5a4SJacob Faibussowitsch {
129756cf3b9cSMatthew G. Knepley   PetscFunctionBegin;
129856cf3b9cSMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
1299ad540459SPierre Jolivet   if (locX_t) PetscValidHeaderSpecific(locX_t, VEC_CLASSID, 3);
1300ad540459SPierre Jolivet   if (faceGeomFVM) PetscValidHeaderSpecific(faceGeomFVM, VEC_CLASSID, 5);
1301ad540459SPierre Jolivet   if (cellGeomFVM) PetscValidHeaderSpecific(cellGeomFVM, VEC_CLASSID, 6);
1302ad540459SPierre Jolivet   if (gradFVM) PetscValidHeaderSpecific(gradFVM, VEC_CLASSID, 7);
13036c51210dSStefano Zampini   PetscTryMethod(dm, "DMPlexInsertTimeDerivativeBoundaryValues_C", (DM, PetscBool, Vec, PetscReal, Vec, Vec, Vec), (dm, insertEssential, locX_t, time, faceGeomFVM, cellGeomFVM, gradFVM));
13043ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
130556cf3b9cSMatthew G. Knepley }
130656cf3b9cSMatthew G. Knepley 
13075962854dSMatthew G. Knepley // Handle non-essential (e.g. outflow) boundary values
13085962854dSMatthew G. Knepley PetscErrorCode DMPlexInsertBoundaryValuesFVM(DM dm, PetscFV fv, Vec locX, PetscReal time, Vec *locGradient)
13095962854dSMatthew G. Knepley {
13105962854dSMatthew G. Knepley   DM  dmGrad;
13115962854dSMatthew G. Knepley   Vec cellGeometryFVM, faceGeometryFVM, locGrad = NULL;
13125962854dSMatthew G. Knepley 
13135962854dSMatthew G. Knepley   PetscFunctionBegin;
13145962854dSMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
13155962854dSMatthew G. Knepley   PetscValidHeaderSpecific(fv, PETSCFV_CLASSID, 2);
13165962854dSMatthew G. Knepley   PetscValidHeaderSpecific(locX, VEC_CLASSID, 3);
13175962854dSMatthew G. Knepley   if (locGradient) {
13185962854dSMatthew G. Knepley     PetscAssertPointer(locGradient, 5);
13195962854dSMatthew G. Knepley     *locGradient = NULL;
13205962854dSMatthew G. Knepley   }
13215962854dSMatthew G. Knepley   PetscCall(DMPlexGetGeometryFVM(dm, &faceGeometryFVM, &cellGeometryFVM, NULL));
13225962854dSMatthew G. Knepley   /* Reconstruct and limit cell gradients */
13235962854dSMatthew G. Knepley   PetscCall(DMPlexGetGradientDM(dm, fv, &dmGrad));
13245962854dSMatthew G. Knepley   if (dmGrad) {
13255962854dSMatthew G. Knepley     Vec      grad;
13265962854dSMatthew G. Knepley     PetscInt fStart, fEnd;
13275962854dSMatthew G. Knepley 
13285962854dSMatthew G. Knepley     PetscCall(DMPlexGetHeightStratum(dm, 1, &fStart, &fEnd));
13295962854dSMatthew G. Knepley     PetscCall(DMGetGlobalVector(dmGrad, &grad));
13305962854dSMatthew G. Knepley     PetscCall(DMPlexReconstructGradients_Internal(dm, fv, fStart, fEnd, faceGeometryFVM, cellGeometryFVM, locX, grad));
13315962854dSMatthew G. Knepley     /* Communicate gradient values */
13325962854dSMatthew G. Knepley     PetscCall(DMGetLocalVector(dmGrad, &locGrad));
13335962854dSMatthew G. Knepley     PetscCall(DMGlobalToLocalBegin(dmGrad, grad, INSERT_VALUES, locGrad));
13345962854dSMatthew G. Knepley     PetscCall(DMGlobalToLocalEnd(dmGrad, grad, INSERT_VALUES, locGrad));
13355962854dSMatthew G. Knepley     PetscCall(DMRestoreGlobalVector(dmGrad, &grad));
13365962854dSMatthew G. Knepley   }
13375962854dSMatthew G. Knepley   PetscCall(DMPlexInsertBoundaryValues(dm, PETSC_FALSE, locX, time, faceGeometryFVM, cellGeometryFVM, locGrad));
13385962854dSMatthew G. Knepley   if (locGradient) *locGradient = locGrad;
13395962854dSMatthew G. Knepley   else if (locGrad) PetscCall(DMRestoreLocalVector(dmGrad, &locGrad));
13405962854dSMatthew G. Knepley   PetscFunctionReturn(PETSC_SUCCESS);
13415962854dSMatthew G. Knepley }
13425962854dSMatthew G. Knepley 
1343d71ae5a4SJacob Faibussowitsch PetscErrorCode DMComputeL2Diff_Plex(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal[], PetscInt, PetscScalar *, void *), void **ctxs, Vec X, PetscReal *diff)
1344d71ae5a4SJacob Faibussowitsch {
1345574a98acSMatthew G. Knepley   Vec localX;
1346574a98acSMatthew G. Knepley 
1347574a98acSMatthew G. Knepley   PetscFunctionBegin;
13489566063dSJacob Faibussowitsch   PetscCall(DMGetLocalVector(dm, &localX));
13499566063dSJacob Faibussowitsch   PetscCall(DMPlexInsertBoundaryValues(dm, PETSC_TRUE, localX, time, NULL, NULL, NULL));
13509566063dSJacob Faibussowitsch   PetscCall(DMGlobalToLocalBegin(dm, X, INSERT_VALUES, localX));
13519566063dSJacob Faibussowitsch   PetscCall(DMGlobalToLocalEnd(dm, X, INSERT_VALUES, localX));
13529566063dSJacob Faibussowitsch   PetscCall(DMPlexComputeL2DiffLocal(dm, time, funcs, ctxs, localX, diff));
13539566063dSJacob Faibussowitsch   PetscCall(DMRestoreLocalVector(dm, &localX));
13543ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1355574a98acSMatthew G. Knepley }
1356574a98acSMatthew G. Knepley 
1357574a98acSMatthew G. Knepley /*@C
135860225df5SJacob Faibussowitsch   DMPlexComputeL2DiffLocal - This function computes the L_2 difference between a function u and an FEM interpolant solution u_h.
1359574a98acSMatthew G. Knepley 
136020f4b53cSBarry Smith   Collective
1361c0f8e1fdSMatthew G. Knepley 
1362574a98acSMatthew G. Knepley   Input Parameters:
1363a1cb98faSBarry Smith + dm     - The `DM`
1364574a98acSMatthew G. Knepley . time   - The time
1365574a98acSMatthew G. Knepley . funcs  - The functions to evaluate for each field component
136620f4b53cSBarry Smith . ctxs   - Optional array of contexts to pass to each function, or `NULL`.
1367574a98acSMatthew G. Knepley - localX - The coefficient vector u_h, a local vector
1368574a98acSMatthew G. Knepley 
1369574a98acSMatthew G. Knepley   Output Parameter:
1370574a98acSMatthew G. Knepley . diff - The diff ||u - u_h||_2
1371574a98acSMatthew G. Knepley 
1372574a98acSMatthew G. Knepley   Level: developer
1373574a98acSMatthew G. Knepley 
13741cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMProjectFunction()`, `DMComputeL2FieldDiff()`, `DMComputeL2GradientDiff()`
1375574a98acSMatthew G. Knepley @*/
1376d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeL2DiffLocal(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal[], PetscInt, PetscScalar *, void *), void **ctxs, Vec localX, PetscReal *diff)
1377d71ae5a4SJacob Faibussowitsch {
13780f09c10fSMatthew G. Knepley   const PetscInt   debug = ((DM_Plex *)dm->data)->printL2;
1379ca3d3a14SMatthew G. Knepley   DM               tdm;
1380ca3d3a14SMatthew G. Knepley   Vec              tv;
1381cb1e1211SMatthew G Knepley   PetscSection     section;
1382c5bbbd5bSMatthew G. Knepley   PetscQuadrature  quad;
13834bee2e38SMatthew G. Knepley   PetscFEGeom      fegeom;
138415496722SMatthew G. Knepley   PetscScalar     *funcVal, *interpolant;
13854bee2e38SMatthew G. Knepley   PetscReal       *coords, *gcoords;
1386cb1e1211SMatthew G Knepley   PetscReal        localDiff = 0.0;
13877318780aSToby Isaac   const PetscReal *quadWeights;
1388412e9a14SMatthew G. Knepley   PetscInt         dim, coordDim, numFields, numComponents = 0, qNc, Nq, cellHeight, cStart, cEnd, c, field, fieldOffset;
1389ca3d3a14SMatthew G. Knepley   PetscBool        transform;
1390cb1e1211SMatthew G Knepley 
1391cb1e1211SMatthew G Knepley   PetscFunctionBegin;
13929566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dm, &dim));
13939566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateDim(dm, &coordDim));
13942a4e142eSMatthew G. Knepley   fegeom.dimEmbed = coordDim;
13959566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dm, &section));
13969566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetNumFields(section, &numFields));
13979566063dSJacob Faibussowitsch   PetscCall(DMGetBasisTransformDM_Internal(dm, &tdm));
13989566063dSJacob Faibussowitsch   PetscCall(DMGetBasisTransformVec_Internal(dm, &tv));
13999566063dSJacob Faibussowitsch   PetscCall(DMHasBasisTransform(dm, &transform));
1400eae3dc7dSJacob Faibussowitsch   PetscCheck(numFields, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of fields is zero!");
1401cb1e1211SMatthew G Knepley   for (field = 0; field < numFields; ++field) {
140215496722SMatthew G. Knepley     PetscObject  obj;
140315496722SMatthew G. Knepley     PetscClassId id;
1404c5bbbd5bSMatthew G. Knepley     PetscInt     Nc;
1405c5bbbd5bSMatthew G. Knepley 
14069566063dSJacob Faibussowitsch     PetscCall(DMGetField(dm, field, NULL, &obj));
14079566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetClassId(obj, &id));
140815496722SMatthew G. Knepley     if (id == PETSCFE_CLASSID) {
140915496722SMatthew G. Knepley       PetscFE fe = (PetscFE)obj;
141015496722SMatthew G. Knepley 
14119566063dSJacob Faibussowitsch       PetscCall(PetscFEGetQuadrature(fe, &quad));
14129566063dSJacob Faibussowitsch       PetscCall(PetscFEGetNumComponents(fe, &Nc));
141315496722SMatthew G. Knepley     } else if (id == PETSCFV_CLASSID) {
141415496722SMatthew G. Knepley       PetscFV fv = (PetscFV)obj;
141515496722SMatthew G. Knepley 
14169566063dSJacob Faibussowitsch       PetscCall(PetscFVGetQuadrature(fv, &quad));
14179566063dSJacob Faibussowitsch       PetscCall(PetscFVGetNumComponents(fv, &Nc));
141863a3b9bcSJacob Faibussowitsch     } else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, field);
1419c5bbbd5bSMatthew G. Knepley     numComponents += Nc;
1420cb1e1211SMatthew G Knepley   }
14219566063dSJacob Faibussowitsch   PetscCall(PetscQuadratureGetData(quad, NULL, &qNc, &Nq, NULL, &quadWeights));
142263a3b9bcSJacob Faibussowitsch   PetscCheck(!(qNc != 1) || !(qNc != numComponents), PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_SIZ, "Quadrature components %" PetscInt_FMT " != %" PetscInt_FMT " field components", qNc, numComponents);
1423c9cb6370SYANG Zongze   PetscCall(PetscMalloc6(numComponents, &funcVal, numComponents, &interpolant, coordDim * (Nq + 1), &coords, Nq, &fegeom.detJ, coordDim * coordDim * Nq, &fegeom.J, coordDim * coordDim * Nq, &fegeom.invJ));
14249566063dSJacob Faibussowitsch   PetscCall(DMPlexGetVTKCellHeight(dm, &cellHeight));
14259566063dSJacob Faibussowitsch   PetscCall(DMPlexGetSimplexOrBoxCells(dm, cellHeight, &cStart, &cEnd));
1426cb1e1211SMatthew G Knepley   for (c = cStart; c < cEnd; ++c) {
1427a1e44745SMatthew G. Knepley     PetscScalar *x        = NULL;
1428cb1e1211SMatthew G Knepley     PetscReal    elemDiff = 0.0;
14299c3cf19fSMatthew G. Knepley     PetscInt     qc       = 0;
1430cb1e1211SMatthew G Knepley 
14319566063dSJacob Faibussowitsch     PetscCall(DMPlexComputeCellGeometryFEM(dm, c, quad, coords, fegeom.J, fegeom.invJ, fegeom.detJ));
1432e8e188d2SZach Atkins     PetscCall(DMPlexVecGetOrientedClosure_Internal(dm, NULL, PETSC_FALSE, localX, c, 0, NULL, &x));
1433cb1e1211SMatthew G Knepley 
143415496722SMatthew G. Knepley     for (field = 0, fieldOffset = 0; field < numFields; ++field) {
143515496722SMatthew G. Knepley       PetscObject  obj;
143615496722SMatthew G. Knepley       PetscClassId id;
1437c110b1eeSGeoffrey Irving       void *const  ctx = ctxs ? ctxs[field] : NULL;
143815496722SMatthew G. Knepley       PetscInt     Nb, Nc, q, fc;
1439cb1e1211SMatthew G Knepley 
14409566063dSJacob Faibussowitsch       PetscCall(DMGetField(dm, field, NULL, &obj));
14419566063dSJacob Faibussowitsch       PetscCall(PetscObjectGetClassId(obj, &id));
14429371c9d4SSatish Balay       if (id == PETSCFE_CLASSID) {
14439371c9d4SSatish Balay         PetscCall(PetscFEGetNumComponents((PetscFE)obj, &Nc));
14449371c9d4SSatish Balay         PetscCall(PetscFEGetDimension((PetscFE)obj, &Nb));
14459371c9d4SSatish Balay       } else if (id == PETSCFV_CLASSID) {
14469371c9d4SSatish Balay         PetscCall(PetscFVGetNumComponents((PetscFV)obj, &Nc));
14479371c9d4SSatish Balay         Nb = 1;
14489371c9d4SSatish Balay       } else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, field);
1449cb1e1211SMatthew G Knepley       if (debug) {
1450cb1e1211SMatthew G Knepley         char title[1024];
145163a3b9bcSJacob Faibussowitsch         PetscCall(PetscSNPrintf(title, 1023, "Solution for Field %" PetscInt_FMT, field));
14529566063dSJacob Faibussowitsch         PetscCall(DMPrintCellVector(c, title, Nb, &x[fieldOffset]));
1453cb1e1211SMatthew G Knepley       }
14547318780aSToby Isaac       for (q = 0; q < Nq; ++q) {
14552a4e142eSMatthew G. Knepley         PetscFEGeom    qgeom;
1456d0609cedSBarry Smith         PetscErrorCode ierr;
14572a4e142eSMatthew G. Knepley 
14582a4e142eSMatthew G. Knepley         qgeom.dimEmbed = fegeom.dimEmbed;
14592a4e142eSMatthew G. Knepley         qgeom.J        = &fegeom.J[q * coordDim * coordDim];
14602a4e142eSMatthew G. Knepley         qgeom.invJ     = &fegeom.invJ[q * coordDim * coordDim];
14612a4e142eSMatthew G. Knepley         qgeom.detJ     = &fegeom.detJ[q];
146263a3b9bcSJacob Faibussowitsch         PetscCheck(fegeom.detJ[q] > 0.0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Invalid determinant %g for element %" PetscInt_FMT ", point %" PetscInt_FMT, (double)fegeom.detJ[q], c, q);
1463d3a7d86cSMatthew G. Knepley         if (transform) {
1464d3a7d86cSMatthew G. Knepley           gcoords = &coords[coordDim * Nq];
14659566063dSJacob Faibussowitsch           PetscCall(DMPlexBasisTransformApplyReal_Internal(dm, &coords[coordDim * q], PETSC_TRUE, coordDim, &coords[coordDim * q], gcoords, dm->transformCtx));
1466d3a7d86cSMatthew G. Knepley         } else {
1467d3a7d86cSMatthew G. Knepley           gcoords = &coords[coordDim * q];
1468d3a7d86cSMatthew G. Knepley         }
14699566063dSJacob Faibussowitsch         PetscCall(PetscArrayzero(funcVal, Nc));
1470ca3d3a14SMatthew G. Knepley         ierr = (*funcs[field])(coordDim, time, gcoords, Nc, funcVal, ctx);
1471e735a8a9SMatthew G. Knepley         if (ierr) {
14729566063dSJacob Faibussowitsch           PetscCall(DMPlexVecRestoreClosure(dm, NULL, localX, c, NULL, &x));
14739566063dSJacob Faibussowitsch           PetscCall(DMRestoreLocalVector(dm, &localX));
14749566063dSJacob Faibussowitsch           PetscCall(PetscFree6(funcVal, interpolant, coords, fegeom.detJ, fegeom.J, fegeom.invJ));
1475e735a8a9SMatthew G. Knepley         }
14769566063dSJacob Faibussowitsch         if (transform) PetscCall(DMPlexBasisTransformApply_Internal(dm, &coords[coordDim * q], PETSC_FALSE, Nc, funcVal, funcVal, dm->transformCtx));
14779566063dSJacob Faibussowitsch         if (id == PETSCFE_CLASSID) PetscCall(PetscFEInterpolate_Static((PetscFE)obj, &x[fieldOffset], &qgeom, q, interpolant));
14789566063dSJacob Faibussowitsch         else if (id == PETSCFV_CLASSID) PetscCall(PetscFVInterpolate_Static((PetscFV)obj, &x[fieldOffset], q, interpolant));
14792df84da0SMatthew G. Knepley         else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, field);
148015496722SMatthew G. Knepley         for (fc = 0; fc < Nc; ++fc) {
1481beaa55a6SMatthew G. Knepley           const PetscReal wt = quadWeights[q * qNc + (qNc == 1 ? 0 : qc + fc)];
14829371c9d4SSatish Balay           if (debug)
14839371c9d4SSatish Balay             PetscCall(PetscPrintf(PETSC_COMM_SELF, "    elem %" PetscInt_FMT " field %" PetscInt_FMT ",%" PetscInt_FMT " point %g %g %g diff %g (%g, %g)\n", c, field, fc, (double)(coordDim > 0 ? coords[coordDim * q] : 0.), (double)(coordDim > 1 ? coords[coordDim * q + 1] : 0.), (double)(coordDim > 2 ? coords[coordDim * q + 2] : 0.),
14849371c9d4SSatish Balay                                   (double)(PetscSqr(PetscRealPart(interpolant[fc] - funcVal[fc])) * wt * fegeom.detJ[q]), (double)PetscRealPart(interpolant[fc]), (double)PetscRealPart(funcVal[fc])));
14854bee2e38SMatthew G. Knepley           elemDiff += PetscSqr(PetscRealPart(interpolant[fc] - funcVal[fc])) * wt * fegeom.detJ[q];
1486cb1e1211SMatthew G Knepley         }
1487cb1e1211SMatthew G Knepley       }
14889c3cf19fSMatthew G. Knepley       fieldOffset += Nb;
1489beaa55a6SMatthew G. Knepley       qc += Nc;
1490cb1e1211SMatthew G Knepley     }
14919566063dSJacob Faibussowitsch     PetscCall(DMPlexVecRestoreClosure(dm, NULL, localX, c, NULL, &x));
14929566063dSJacob Faibussowitsch     if (debug) PetscCall(PetscPrintf(PETSC_COMM_SELF, "  elem %" PetscInt_FMT " diff %g\n", c, (double)elemDiff));
1493cb1e1211SMatthew G Knepley     localDiff += elemDiff;
1494cb1e1211SMatthew G Knepley   }
14959566063dSJacob Faibussowitsch   PetscCall(PetscFree6(funcVal, interpolant, coords, fegeom.detJ, fegeom.J, fegeom.invJ));
14961c2dc1cbSBarry Smith   PetscCall(MPIU_Allreduce(&localDiff, diff, 1, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)dm)));
1497cb1e1211SMatthew G Knepley   *diff = PetscSqrtReal(*diff);
14983ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1499cb1e1211SMatthew G Knepley }
1500cb1e1211SMatthew G Knepley 
1501d71ae5a4SJacob Faibussowitsch PetscErrorCode DMComputeL2GradientDiff_Plex(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal[], const PetscReal[], PetscInt, PetscScalar *, void *), void **ctxs, Vec X, const PetscReal n[], PetscReal *diff)
1502d71ae5a4SJacob Faibussowitsch {
15030f09c10fSMatthew G. Knepley   const PetscInt   debug = ((DM_Plex *)dm->data)->printL2;
1504ca3d3a14SMatthew G. Knepley   DM               tdm;
1505cb1e1211SMatthew G Knepley   PetscSection     section;
150640e14135SMatthew G. Knepley   PetscQuadrature  quad;
1507ca3d3a14SMatthew G. Knepley   Vec              localX, tv;
15089c3cf19fSMatthew G. Knepley   PetscScalar     *funcVal, *interpolant;
15092a4e142eSMatthew G. Knepley   const PetscReal *quadWeights;
15104bee2e38SMatthew G. Knepley   PetscFEGeom      fegeom;
15114bee2e38SMatthew G. Knepley   PetscReal       *coords, *gcoords;
151240e14135SMatthew G. Knepley   PetscReal        localDiff = 0.0;
1513485ad865SMatthew G. Knepley   PetscInt         dim, coordDim, qNc = 0, Nq = 0, numFields, numComponents = 0, cStart, cEnd, c, field, fieldOffset;
1514ca3d3a14SMatthew G. Knepley   PetscBool        transform;
1515cb1e1211SMatthew G Knepley 
1516cb1e1211SMatthew G Knepley   PetscFunctionBegin;
15179566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dm, &dim));
15189566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateDim(dm, &coordDim));
15194bee2e38SMatthew G. Knepley   fegeom.dimEmbed = coordDim;
15209566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dm, &section));
15219566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetNumFields(section, &numFields));
15229566063dSJacob Faibussowitsch   PetscCall(DMGetLocalVector(dm, &localX));
15239566063dSJacob Faibussowitsch   PetscCall(DMGlobalToLocalBegin(dm, X, INSERT_VALUES, localX));
15249566063dSJacob Faibussowitsch   PetscCall(DMGlobalToLocalEnd(dm, X, INSERT_VALUES, localX));
15259566063dSJacob Faibussowitsch   PetscCall(DMGetBasisTransformDM_Internal(dm, &tdm));
15269566063dSJacob Faibussowitsch   PetscCall(DMGetBasisTransformVec_Internal(dm, &tv));
15279566063dSJacob Faibussowitsch   PetscCall(DMHasBasisTransform(dm, &transform));
1528652b88e8SMatthew G. Knepley   for (field = 0; field < numFields; ++field) {
15290f2d7e86SMatthew G. Knepley     PetscFE  fe;
153040e14135SMatthew G. Knepley     PetscInt Nc;
1531652b88e8SMatthew G. Knepley 
15329566063dSJacob Faibussowitsch     PetscCall(DMGetField(dm, field, NULL, (PetscObject *)&fe));
15339566063dSJacob Faibussowitsch     PetscCall(PetscFEGetQuadrature(fe, &quad));
15349566063dSJacob Faibussowitsch     PetscCall(PetscFEGetNumComponents(fe, &Nc));
153540e14135SMatthew G. Knepley     numComponents += Nc;
1536652b88e8SMatthew G. Knepley   }
15379566063dSJacob Faibussowitsch   PetscCall(PetscQuadratureGetData(quad, NULL, &qNc, &Nq, NULL, &quadWeights));
153863a3b9bcSJacob Faibussowitsch   PetscCheck(!(qNc != 1) || !(qNc != numComponents), PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_SIZ, "Quadrature components %" PetscInt_FMT " != %" PetscInt_FMT " field components", qNc, numComponents);
15399566063dSJacob Faibussowitsch   /* PetscCall(DMProjectFunctionLocal(dm, fe, funcs, INSERT_BC_VALUES, localX)); */
1540c9cb6370SYANG Zongze   PetscCall(PetscMalloc6(numComponents, &funcVal, coordDim * (Nq + 1), &coords, coordDim * coordDim * Nq, &fegeom.J, coordDim * coordDim * Nq, &fegeom.invJ, numComponents * coordDim, &interpolant, Nq, &fegeom.detJ));
15419566063dSJacob Faibussowitsch   PetscCall(DMPlexGetSimplexOrBoxCells(dm, 0, &cStart, &cEnd));
154240e14135SMatthew G. Knepley   for (c = cStart; c < cEnd; ++c) {
154340e14135SMatthew G. Knepley     PetscScalar *x        = NULL;
154440e14135SMatthew G. Knepley     PetscReal    elemDiff = 0.0;
15459c3cf19fSMatthew G. Knepley     PetscInt     qc       = 0;
1546652b88e8SMatthew G. Knepley 
15479566063dSJacob Faibussowitsch     PetscCall(DMPlexComputeCellGeometryFEM(dm, c, quad, coords, fegeom.J, fegeom.invJ, fegeom.detJ));
1548e8e188d2SZach Atkins     PetscCall(DMPlexVecGetOrientedClosure_Internal(dm, NULL, PETSC_FALSE, localX, c, 0, NULL, &x));
154940e14135SMatthew G. Knepley 
15509c3cf19fSMatthew G. Knepley     for (field = 0, fieldOffset = 0; field < numFields; ++field) {
15510f2d7e86SMatthew G. Knepley       PetscFE     fe;
155251259fa3SMatthew G. Knepley       void *const ctx = ctxs ? ctxs[field] : NULL;
15539c3cf19fSMatthew G. Knepley       PetscInt    Nb, Nc, q, fc;
155440e14135SMatthew G. Knepley 
15559566063dSJacob Faibussowitsch       PetscCall(DMGetField(dm, field, NULL, (PetscObject *)&fe));
15569566063dSJacob Faibussowitsch       PetscCall(PetscFEGetDimension(fe, &Nb));
15579566063dSJacob Faibussowitsch       PetscCall(PetscFEGetNumComponents(fe, &Nc));
155840e14135SMatthew G. Knepley       if (debug) {
155940e14135SMatthew G. Knepley         char title[1024];
15609566063dSJacob Faibussowitsch         PetscCall(PetscSNPrintf(title, 1023, "Solution for Field %" PetscInt_FMT, field));
15619566063dSJacob Faibussowitsch         PetscCall(DMPrintCellVector(c, title, Nb, &x[fieldOffset]));
1562652b88e8SMatthew G. Knepley       }
15639c3cf19fSMatthew G. Knepley       for (q = 0; q < Nq; ++q) {
15642a4e142eSMatthew G. Knepley         PetscFEGeom    qgeom;
1565d0609cedSBarry Smith         PetscErrorCode ierr;
15662a4e142eSMatthew G. Knepley 
15672a4e142eSMatthew G. Knepley         qgeom.dimEmbed = fegeom.dimEmbed;
15682a4e142eSMatthew G. Knepley         qgeom.J        = &fegeom.J[q * coordDim * coordDim];
15692a4e142eSMatthew G. Knepley         qgeom.invJ     = &fegeom.invJ[q * coordDim * coordDim];
15702a4e142eSMatthew G. Knepley         qgeom.detJ     = &fegeom.detJ[q];
15712df84da0SMatthew G. Knepley         PetscCheck(fegeom.detJ[q] > 0.0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Invalid determinant %g for element %" PetscInt_FMT ", quadrature points %" PetscInt_FMT, (double)fegeom.detJ[q], c, q);
1572d3a7d86cSMatthew G. Knepley         if (transform) {
1573d3a7d86cSMatthew G. Knepley           gcoords = &coords[coordDim * Nq];
15749566063dSJacob Faibussowitsch           PetscCall(DMPlexBasisTransformApplyReal_Internal(dm, &coords[coordDim * q], PETSC_TRUE, coordDim, &coords[coordDim * q], gcoords, dm->transformCtx));
1575d3a7d86cSMatthew G. Knepley         } else {
1576d3a7d86cSMatthew G. Knepley           gcoords = &coords[coordDim * q];
1577d3a7d86cSMatthew G. Knepley         }
15789566063dSJacob Faibussowitsch         PetscCall(PetscArrayzero(funcVal, Nc));
15794bee2e38SMatthew G. Knepley         ierr = (*funcs[field])(coordDim, time, gcoords, n, Nc, funcVal, ctx);
1580e735a8a9SMatthew G. Knepley         if (ierr) {
15819566063dSJacob Faibussowitsch           PetscCall(DMPlexVecRestoreClosure(dm, NULL, localX, c, NULL, &x));
15829566063dSJacob Faibussowitsch           PetscCall(DMRestoreLocalVector(dm, &localX));
15839566063dSJacob Faibussowitsch           PetscCall(PetscFree6(funcVal, coords, fegeom.J, fegeom.invJ, interpolant, fegeom.detJ));
1584e735a8a9SMatthew G. Knepley         }
15859566063dSJacob Faibussowitsch         if (transform) PetscCall(DMPlexBasisTransformApply_Internal(dm, &coords[coordDim * q], PETSC_FALSE, Nc, funcVal, funcVal, dm->transformCtx));
15869566063dSJacob Faibussowitsch         PetscCall(PetscFEInterpolateGradient_Static(fe, 1, &x[fieldOffset], &qgeom, q, interpolant));
15874bee2e38SMatthew G. Knepley         /* Overwrite with the dot product if the normal is given */
15884bee2e38SMatthew G. Knepley         if (n) {
15894bee2e38SMatthew G. Knepley           for (fc = 0; fc < Nc; ++fc) {
15904bee2e38SMatthew G. Knepley             PetscScalar sum = 0.0;
15914bee2e38SMatthew G. Knepley             PetscInt    d;
15924bee2e38SMatthew G. Knepley             for (d = 0; d < dim; ++d) sum += interpolant[fc * dim + d] * n[d];
15934bee2e38SMatthew G. Knepley             interpolant[fc] = sum;
15944bee2e38SMatthew G. Knepley           }
15954bee2e38SMatthew G. Knepley         }
15969c3cf19fSMatthew G. Knepley         for (fc = 0; fc < Nc; ++fc) {
1597beaa55a6SMatthew G. Knepley           const PetscReal wt = quadWeights[q * qNc + (qNc == 1 ? 0 : qc + fc)];
159863a3b9bcSJacob Faibussowitsch           if (debug) PetscCall(PetscPrintf(PETSC_COMM_SELF, "    elem %" PetscInt_FMT " fieldDer %" PetscInt_FMT ",%" PetscInt_FMT " diff %g\n", c, field, fc, (double)(PetscSqr(PetscRealPart(interpolant[fc] - funcVal[fc])) * wt * fegeom.detJ[q])));
15994bee2e38SMatthew G. Knepley           elemDiff += PetscSqr(PetscRealPart(interpolant[fc] - funcVal[fc])) * wt * fegeom.detJ[q];
160040e14135SMatthew G. Knepley         }
160140e14135SMatthew G. Knepley       }
16029c3cf19fSMatthew G. Knepley       fieldOffset += Nb;
16039c3cf19fSMatthew G. Knepley       qc += Nc;
160440e14135SMatthew G. Knepley     }
16059566063dSJacob Faibussowitsch     PetscCall(DMPlexVecRestoreClosure(dm, NULL, localX, c, NULL, &x));
160663a3b9bcSJacob Faibussowitsch     if (debug) PetscCall(PetscPrintf(PETSC_COMM_SELF, "  elem %" PetscInt_FMT " diff %g\n", c, (double)elemDiff));
160740e14135SMatthew G. Knepley     localDiff += elemDiff;
160840e14135SMatthew G. Knepley   }
16099566063dSJacob Faibussowitsch   PetscCall(PetscFree6(funcVal, coords, fegeom.J, fegeom.invJ, interpolant, fegeom.detJ));
16109566063dSJacob Faibussowitsch   PetscCall(DMRestoreLocalVector(dm, &localX));
16111c2dc1cbSBarry Smith   PetscCall(MPIU_Allreduce(&localDiff, diff, 1, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)dm)));
161240e14135SMatthew G. Knepley   *diff = PetscSqrtReal(*diff);
16133ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1614cb1e1211SMatthew G Knepley }
1615cb1e1211SMatthew G Knepley 
1616d71ae5a4SJacob Faibussowitsch PetscErrorCode DMComputeL2FieldDiff_Plex(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal[], PetscInt, PetscScalar *, void *), void **ctxs, Vec X, PetscReal *diff)
1617d71ae5a4SJacob Faibussowitsch {
16180f09c10fSMatthew G. Knepley   const PetscInt debug = ((DM_Plex *)dm->data)->printL2;
1619ca3d3a14SMatthew G. Knepley   DM             tdm;
1620083401c6SMatthew G. Knepley   DMLabel        depthLabel;
162173d901b8SMatthew G. Knepley   PetscSection   section;
1622ca3d3a14SMatthew G. Knepley   Vec            localX, tv;
162373d901b8SMatthew G. Knepley   PetscReal     *localDiff;
1624083401c6SMatthew G. Knepley   PetscInt       dim, depth, dE, Nf, f, Nds, s;
1625ca3d3a14SMatthew G. Knepley   PetscBool      transform;
162673d901b8SMatthew G. Knepley 
162773d901b8SMatthew G. Knepley   PetscFunctionBegin;
16289566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dm, &dim));
16299566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateDim(dm, &dE));
16309566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dm, &section));
16319566063dSJacob Faibussowitsch   PetscCall(DMGetLocalVector(dm, &localX));
16329566063dSJacob Faibussowitsch   PetscCall(DMGetBasisTransformDM_Internal(dm, &tdm));
16339566063dSJacob Faibussowitsch   PetscCall(DMGetBasisTransformVec_Internal(dm, &tv));
16349566063dSJacob Faibussowitsch   PetscCall(DMHasBasisTransform(dm, &transform));
16359566063dSJacob Faibussowitsch   PetscCall(DMGetNumFields(dm, &Nf));
16369566063dSJacob Faibussowitsch   PetscCall(DMPlexGetDepthLabel(dm, &depthLabel));
16379566063dSJacob Faibussowitsch   PetscCall(DMLabelGetNumValues(depthLabel, &depth));
1638083401c6SMatthew G. Knepley 
16399566063dSJacob Faibussowitsch   PetscCall(VecSet(localX, 0.0));
16409566063dSJacob Faibussowitsch   PetscCall(DMGlobalToLocalBegin(dm, X, INSERT_VALUES, localX));
16419566063dSJacob Faibussowitsch   PetscCall(DMGlobalToLocalEnd(dm, X, INSERT_VALUES, localX));
16429566063dSJacob Faibussowitsch   PetscCall(DMProjectFunctionLocal(dm, time, funcs, ctxs, INSERT_BC_VALUES, localX));
16439566063dSJacob Faibussowitsch   PetscCall(DMGetNumDS(dm, &Nds));
16449566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(Nf, &localDiff));
1645083401c6SMatthew G. Knepley   for (s = 0; s < Nds; ++s) {
1646083401c6SMatthew G. Knepley     PetscDS          ds;
1647083401c6SMatthew G. Knepley     DMLabel          label;
1648083401c6SMatthew G. Knepley     IS               fieldIS, pointIS;
1649083401c6SMatthew G. Knepley     const PetscInt  *fields, *points = NULL;
1650083401c6SMatthew G. Knepley     PetscQuadrature  quad;
1651083401c6SMatthew G. Knepley     const PetscReal *quadPoints, *quadWeights;
1652083401c6SMatthew G. Knepley     PetscFEGeom      fegeom;
1653083401c6SMatthew G. Knepley     PetscReal       *coords, *gcoords;
1654083401c6SMatthew G. Knepley     PetscScalar     *funcVal, *interpolant;
16555fedec97SMatthew G. Knepley     PetscBool        isCohesive;
1656083401c6SMatthew G. Knepley     PetscInt         qNc, Nq, totNc, cStart = 0, cEnd, c, dsNf;
165773d901b8SMatthew G. Knepley 
165807218a29SMatthew G. Knepley     PetscCall(DMGetRegionNumDS(dm, s, &label, &fieldIS, &ds, NULL));
16599566063dSJacob Faibussowitsch     PetscCall(ISGetIndices(fieldIS, &fields));
16609566063dSJacob Faibussowitsch     PetscCall(PetscDSIsCohesive(ds, &isCohesive));
16619566063dSJacob Faibussowitsch     PetscCall(PetscDSGetNumFields(ds, &dsNf));
16629566063dSJacob Faibussowitsch     PetscCall(PetscDSGetTotalComponents(ds, &totNc));
16639566063dSJacob Faibussowitsch     PetscCall(PetscDSGetQuadrature(ds, &quad));
16649566063dSJacob Faibussowitsch     PetscCall(PetscQuadratureGetData(quad, NULL, &qNc, &Nq, &quadPoints, &quadWeights));
166563a3b9bcSJacob Faibussowitsch     PetscCheck(!(qNc != 1) || !(qNc != totNc), PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Quadrature components %" PetscInt_FMT " != %" PetscInt_FMT " field components", qNc, totNc);
16669566063dSJacob Faibussowitsch     PetscCall(PetscCalloc6(totNc, &funcVal, totNc, &interpolant, dE * (Nq + 1), &coords, Nq, &fegeom.detJ, dE * dE * Nq, &fegeom.J, dE * dE * Nq, &fegeom.invJ));
1667083401c6SMatthew G. Knepley     if (!label) {
16689566063dSJacob Faibussowitsch       PetscCall(DMPlexGetSimplexOrBoxCells(dm, 0, &cStart, &cEnd));
1669083401c6SMatthew G. Knepley     } else {
16709566063dSJacob Faibussowitsch       PetscCall(DMLabelGetStratumIS(label, 1, &pointIS));
16719566063dSJacob Faibussowitsch       PetscCall(ISGetLocalSize(pointIS, &cEnd));
16729566063dSJacob Faibussowitsch       PetscCall(ISGetIndices(pointIS, &points));
1673083401c6SMatthew G. Knepley     }
167473d901b8SMatthew G. Knepley     for (c = cStart; c < cEnd; ++c) {
1675083401c6SMatthew G. Knepley       const PetscInt  cell = points ? points[c] : c;
167673d901b8SMatthew G. Knepley       PetscScalar    *x    = NULL;
16775fedec97SMatthew G. Knepley       const PetscInt *cone;
16785fedec97SMatthew G. Knepley       PetscInt        qc = 0, fOff = 0, dep;
167973d901b8SMatthew G. Knepley 
16809566063dSJacob Faibussowitsch       PetscCall(DMLabelGetValue(depthLabel, cell, &dep));
1681083401c6SMatthew G. Knepley       if (dep != depth - 1) continue;
16825fedec97SMatthew G. Knepley       if (isCohesive) {
16839566063dSJacob Faibussowitsch         PetscCall(DMPlexGetCone(dm, cell, &cone));
16849566063dSJacob Faibussowitsch         PetscCall(DMPlexComputeCellGeometryFEM(dm, cone[0], quad, coords, fegeom.J, fegeom.invJ, fegeom.detJ));
168596959cd1SMatthew G. Knepley       } else {
16869566063dSJacob Faibussowitsch         PetscCall(DMPlexComputeCellGeometryFEM(dm, cell, quad, coords, fegeom.J, fegeom.invJ, fegeom.detJ));
168796959cd1SMatthew G. Knepley       }
1688e8e188d2SZach Atkins       PetscCall(DMPlexVecGetOrientedClosure_Internal(dm, NULL, PETSC_FALSE, localX, cell, 0, NULL, &x));
16895fedec97SMatthew G. Knepley       for (f = 0; f < dsNf; ++f) {
169015496722SMatthew G. Knepley         PetscObject  obj;
169115496722SMatthew G. Knepley         PetscClassId id;
1692083401c6SMatthew G. Knepley         void *const  ctx = ctxs ? ctxs[fields[f]] : NULL;
169315496722SMatthew G. Knepley         PetscInt     Nb, Nc, q, fc;
169415496722SMatthew G. Knepley         PetscReal    elemDiff = 0.0;
16955fedec97SMatthew G. Knepley         PetscBool    cohesive;
169615496722SMatthew G. Knepley 
16979566063dSJacob Faibussowitsch         PetscCall(PetscDSGetCohesive(ds, f, &cohesive));
16989566063dSJacob Faibussowitsch         PetscCall(PetscDSGetDiscretization(ds, f, &obj));
16999566063dSJacob Faibussowitsch         PetscCall(PetscObjectGetClassId(obj, &id));
17009371c9d4SSatish Balay         if (id == PETSCFE_CLASSID) {
17019371c9d4SSatish Balay           PetscCall(PetscFEGetNumComponents((PetscFE)obj, &Nc));
17029371c9d4SSatish Balay           PetscCall(PetscFEGetDimension((PetscFE)obj, &Nb));
17039371c9d4SSatish Balay         } else if (id == PETSCFV_CLASSID) {
17049371c9d4SSatish Balay           PetscCall(PetscFVGetNumComponents((PetscFV)obj, &Nc));
17059371c9d4SSatish Balay           Nb = 1;
17069371c9d4SSatish Balay         } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, fields[f]);
1707c82db6dbSMatthew G. Knepley         if (isCohesive && !cohesive) {
1708c82db6dbSMatthew G. Knepley           fOff += Nb * 2;
1709c82db6dbSMatthew G. Knepley           qc += Nc;
1710c82db6dbSMatthew G. Knepley           continue;
1711c82db6dbSMatthew G. Knepley         }
171273d901b8SMatthew G. Knepley         if (debug) {
171373d901b8SMatthew G. Knepley           char title[1024];
171463a3b9bcSJacob Faibussowitsch           PetscCall(PetscSNPrintf(title, 1023, "Solution for Field %" PetscInt_FMT, fields[f]));
17159566063dSJacob Faibussowitsch           PetscCall(DMPrintCellVector(cell, title, Nb, &x[fOff]));
171673d901b8SMatthew G. Knepley         }
17177318780aSToby Isaac         for (q = 0; q < Nq; ++q) {
17182a4e142eSMatthew G. Knepley           PetscFEGeom    qgeom;
1719d0609cedSBarry Smith           PetscErrorCode ierr;
17202a4e142eSMatthew G. Knepley 
17212a4e142eSMatthew G. Knepley           qgeom.dimEmbed = fegeom.dimEmbed;
1722083401c6SMatthew G. Knepley           qgeom.J        = &fegeom.J[q * dE * dE];
1723083401c6SMatthew G. Knepley           qgeom.invJ     = &fegeom.invJ[q * dE * dE];
17242a4e142eSMatthew G. Knepley           qgeom.detJ     = &fegeom.detJ[q];
172563a3b9bcSJacob Faibussowitsch           PetscCheck(fegeom.detJ[q] > 0.0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Invalid determinant %g for cell %" PetscInt_FMT ", quadrature point %" PetscInt_FMT, (double)fegeom.detJ[q], cell, q);
1726d3a7d86cSMatthew G. Knepley           if (transform) {
1727083401c6SMatthew G. Knepley             gcoords = &coords[dE * Nq];
17289566063dSJacob Faibussowitsch             PetscCall(DMPlexBasisTransformApplyReal_Internal(dm, &coords[dE * q], PETSC_TRUE, dE, &coords[dE * q], gcoords, dm->transformCtx));
1729d3a7d86cSMatthew G. Knepley           } else {
1730083401c6SMatthew G. Knepley             gcoords = &coords[dE * q];
1731d3a7d86cSMatthew G. Knepley           }
17322df84da0SMatthew G. Knepley           for (fc = 0; fc < Nc; ++fc) funcVal[fc] = 0.;
1733083401c6SMatthew G. Knepley           ierr = (*funcs[fields[f]])(dE, time, gcoords, Nc, funcVal, ctx);
1734e735a8a9SMatthew G. Knepley           if (ierr) {
17359566063dSJacob Faibussowitsch             PetscCall(DMPlexVecRestoreClosure(dm, NULL, localX, cell, NULL, &x));
17369566063dSJacob Faibussowitsch             PetscCall(DMRestoreLocalVector(dm, &localX));
17379566063dSJacob Faibussowitsch             PetscCall(PetscFree6(funcVal, interpolant, coords, fegeom.detJ, fegeom.J, fegeom.invJ));
1738e735a8a9SMatthew G. Knepley           }
17399566063dSJacob Faibussowitsch           if (transform) PetscCall(DMPlexBasisTransformApply_Internal(dm, &coords[dE * q], PETSC_FALSE, Nc, funcVal, funcVal, dm->transformCtx));
174096959cd1SMatthew G. Knepley           /* Call once for each face, except for lagrange field */
17419566063dSJacob Faibussowitsch           if (id == PETSCFE_CLASSID) PetscCall(PetscFEInterpolate_Static((PetscFE)obj, &x[fOff], &qgeom, q, interpolant));
17429566063dSJacob Faibussowitsch           else if (id == PETSCFV_CLASSID) PetscCall(PetscFVInterpolate_Static((PetscFV)obj, &x[fOff], q, interpolant));
174363a3b9bcSJacob Faibussowitsch           else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, fields[f]);
174415496722SMatthew G. Knepley           for (fc = 0; fc < Nc; ++fc) {
1745beaa55a6SMatthew G. Knepley             const PetscReal wt = quadWeights[q * qNc + (qNc == 1 ? 0 : qc + fc)];
17469371c9d4SSatish Balay             if (debug)
17479371c9d4SSatish Balay               PetscCall(PetscPrintf(PETSC_COMM_SELF, "    cell %" PetscInt_FMT " field %" PetscInt_FMT ",%" PetscInt_FMT " point %g %g %g diff %g\n", cell, fields[f], fc, (double)(dE > 0 ? coords[dE * q] : 0.), (double)(dE > 1 ? coords[dE * q + 1] : 0.), (double)(dE > 2 ? coords[dE * q + 2] : 0.),
17489371c9d4SSatish Balay                                     (double)(PetscSqr(PetscRealPart(interpolant[fc] - funcVal[fc])) * wt * fegeom.detJ[q])));
17494bee2e38SMatthew G. Knepley             elemDiff += PetscSqr(PetscRealPart(interpolant[fc] - funcVal[fc])) * wt * fegeom.detJ[q];
175073d901b8SMatthew G. Knepley           }
175173d901b8SMatthew G. Knepley         }
1752083401c6SMatthew G. Knepley         fOff += Nb;
17539c3cf19fSMatthew G. Knepley         qc += Nc;
1754083401c6SMatthew G. Knepley         localDiff[fields[f]] += elemDiff;
175563a3b9bcSJacob Faibussowitsch         if (debug) PetscCall(PetscPrintf(PETSC_COMM_SELF, "  cell %" PetscInt_FMT " field %" PetscInt_FMT " cum diff %g\n", cell, fields[f], (double)localDiff[fields[f]]));
175673d901b8SMatthew G. Knepley       }
17579566063dSJacob Faibussowitsch       PetscCall(DMPlexVecRestoreClosure(dm, NULL, localX, cell, NULL, &x));
1758083401c6SMatthew G. Knepley     }
1759083401c6SMatthew G. Knepley     if (label) {
17609566063dSJacob Faibussowitsch       PetscCall(ISRestoreIndices(pointIS, &points));
17619566063dSJacob Faibussowitsch       PetscCall(ISDestroy(&pointIS));
1762083401c6SMatthew G. Knepley     }
17639566063dSJacob Faibussowitsch     PetscCall(ISRestoreIndices(fieldIS, &fields));
17649566063dSJacob Faibussowitsch     PetscCall(PetscFree6(funcVal, interpolant, coords, fegeom.detJ, fegeom.J, fegeom.invJ));
176573d901b8SMatthew G. Knepley   }
17669566063dSJacob Faibussowitsch   PetscCall(DMRestoreLocalVector(dm, &localX));
17671c2dc1cbSBarry Smith   PetscCall(MPIU_Allreduce(localDiff, diff, Nf, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)dm)));
17689566063dSJacob Faibussowitsch   PetscCall(PetscFree(localDiff));
1769083401c6SMatthew G. Knepley   for (f = 0; f < Nf; ++f) diff[f] = PetscSqrtReal(diff[f]);
17703ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
177173d901b8SMatthew G. Knepley }
177273d901b8SMatthew G. Knepley 
1773e729f68cSMatthew G. Knepley /*@C
1774e729f68cSMatthew G. Knepley   DMPlexComputeL2DiffVec - This function computes the cellwise L_2 difference between a function u and an FEM interpolant solution u_h, and stores it in a Vec.
1775e729f68cSMatthew G. Knepley 
177620f4b53cSBarry Smith   Collective
1777c0f8e1fdSMatthew G. Knepley 
1778e729f68cSMatthew G. Knepley   Input Parameters:
1779a1cb98faSBarry Smith + dm    - The `DM`
17800163fd50SMatthew G. Knepley . time  - The time
178120f4b53cSBarry Smith . funcs - The functions to evaluate for each field component: `NULL` means that component does not contribute to error calculation
178220f4b53cSBarry Smith . ctxs  - Optional array of contexts to pass to each function, or `NULL`.
1783e729f68cSMatthew G. Knepley - X     - The coefficient vector u_h
1784e729f68cSMatthew G. Knepley 
1785e729f68cSMatthew G. Knepley   Output Parameter:
178620f4b53cSBarry Smith . D - A `Vec` which holds the difference ||u - u_h||_2 for each cell
1787e729f68cSMatthew G. Knepley 
1788e729f68cSMatthew G. Knepley   Level: developer
1789e729f68cSMatthew G. Knepley 
17901cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMProjectFunction()`, `DMComputeL2Diff()`, `DMPlexComputeL2FieldDiff()`, `DMComputeL2GradientDiff()`
1791e729f68cSMatthew G. Knepley @*/
1792d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeL2DiffVec(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal[], PetscInt, PetscScalar *, void *), void **ctxs, Vec X, Vec D)
1793d71ae5a4SJacob Faibussowitsch {
1794e729f68cSMatthew G. Knepley   PetscSection     section;
1795e729f68cSMatthew G. Knepley   PetscQuadrature  quad;
1796e729f68cSMatthew G. Knepley   Vec              localX;
17974bee2e38SMatthew G. Knepley   PetscFEGeom      fegeom;
1798e729f68cSMatthew G. Knepley   PetscScalar     *funcVal, *interpolant;
17994bee2e38SMatthew G. Knepley   PetscReal       *coords;
1800e729f68cSMatthew G. Knepley   const PetscReal *quadPoints, *quadWeights;
1801485ad865SMatthew G. Knepley   PetscInt         dim, coordDim, numFields, numComponents = 0, qNc, Nq, cStart, cEnd, c, field, fieldOffset;
1802e729f68cSMatthew G. Knepley 
1803e729f68cSMatthew G. Knepley   PetscFunctionBegin;
18049566063dSJacob Faibussowitsch   PetscCall(VecSet(D, 0.0));
18059566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dm, &dim));
18069566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateDim(dm, &coordDim));
18079566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dm, &section));
18089566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetNumFields(section, &numFields));
18099566063dSJacob Faibussowitsch   PetscCall(DMGetLocalVector(dm, &localX));
18109566063dSJacob Faibussowitsch   PetscCall(DMProjectFunctionLocal(dm, time, funcs, ctxs, INSERT_BC_VALUES, localX));
18119566063dSJacob Faibussowitsch   PetscCall(DMGlobalToLocalBegin(dm, X, INSERT_VALUES, localX));
18129566063dSJacob Faibussowitsch   PetscCall(DMGlobalToLocalEnd(dm, X, INSERT_VALUES, localX));
1813e729f68cSMatthew G. Knepley   for (field = 0; field < numFields; ++field) {
1814e729f68cSMatthew G. Knepley     PetscObject  obj;
1815e729f68cSMatthew G. Knepley     PetscClassId id;
1816e729f68cSMatthew G. Knepley     PetscInt     Nc;
1817e729f68cSMatthew G. Knepley 
18189566063dSJacob Faibussowitsch     PetscCall(DMGetField(dm, field, NULL, &obj));
18199566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetClassId(obj, &id));
1820e729f68cSMatthew G. Knepley     if (id == PETSCFE_CLASSID) {
1821e729f68cSMatthew G. Knepley       PetscFE fe = (PetscFE)obj;
1822e729f68cSMatthew G. Knepley 
18239566063dSJacob Faibussowitsch       PetscCall(PetscFEGetQuadrature(fe, &quad));
18249566063dSJacob Faibussowitsch       PetscCall(PetscFEGetNumComponents(fe, &Nc));
1825e729f68cSMatthew G. Knepley     } else if (id == PETSCFV_CLASSID) {
1826e729f68cSMatthew G. Knepley       PetscFV fv = (PetscFV)obj;
1827e729f68cSMatthew G. Knepley 
18289566063dSJacob Faibussowitsch       PetscCall(PetscFVGetQuadrature(fv, &quad));
18299566063dSJacob Faibussowitsch       PetscCall(PetscFVGetNumComponents(fv, &Nc));
183063a3b9bcSJacob Faibussowitsch     } else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, field);
1831e729f68cSMatthew G. Knepley     numComponents += Nc;
1832e729f68cSMatthew G. Knepley   }
18339566063dSJacob Faibussowitsch   PetscCall(PetscQuadratureGetData(quad, NULL, &qNc, &Nq, &quadPoints, &quadWeights));
183463a3b9bcSJacob Faibussowitsch   PetscCheck(!(qNc != 1) || !(qNc != numComponents), PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_SIZ, "Quadrature components %" PetscInt_FMT " != %" PetscInt_FMT " field components", qNc, numComponents);
18359566063dSJacob Faibussowitsch   PetscCall(PetscMalloc6(numComponents, &funcVal, numComponents, &interpolant, coordDim * Nq, &coords, Nq, &fegeom.detJ, coordDim * coordDim * Nq, &fegeom.J, coordDim * coordDim * Nq, &fegeom.invJ));
18369566063dSJacob Faibussowitsch   PetscCall(DMPlexGetSimplexOrBoxCells(dm, 0, &cStart, &cEnd));
1837e729f68cSMatthew G. Knepley   for (c = cStart; c < cEnd; ++c) {
1838e729f68cSMatthew G. Knepley     PetscScalar *x        = NULL;
18396f288a59SMatthew G. Knepley     PetscScalar  elemDiff = 0.0;
18409c3cf19fSMatthew G. Knepley     PetscInt     qc       = 0;
1841e729f68cSMatthew G. Knepley 
18429566063dSJacob Faibussowitsch     PetscCall(DMPlexComputeCellGeometryFEM(dm, c, quad, coords, fegeom.J, fegeom.invJ, fegeom.detJ));
1843e8e188d2SZach Atkins     PetscCall(DMPlexVecGetOrientedClosure_Internal(dm, NULL, PETSC_FALSE, localX, c, 0, NULL, &x));
1844e729f68cSMatthew G. Knepley 
1845e729f68cSMatthew G. Knepley     for (field = 0, fieldOffset = 0; field < numFields; ++field) {
1846e729f68cSMatthew G. Knepley       PetscObject  obj;
1847e729f68cSMatthew G. Knepley       PetscClassId id;
1848e729f68cSMatthew G. Knepley       void *const  ctx = ctxs ? ctxs[field] : NULL;
1849e729f68cSMatthew G. Knepley       PetscInt     Nb, Nc, q, fc;
1850e729f68cSMatthew G. Knepley 
18519566063dSJacob Faibussowitsch       PetscCall(DMGetField(dm, field, NULL, &obj));
18529566063dSJacob Faibussowitsch       PetscCall(PetscObjectGetClassId(obj, &id));
18539371c9d4SSatish Balay       if (id == PETSCFE_CLASSID) {
18549371c9d4SSatish Balay         PetscCall(PetscFEGetNumComponents((PetscFE)obj, &Nc));
18559371c9d4SSatish Balay         PetscCall(PetscFEGetDimension((PetscFE)obj, &Nb));
18569371c9d4SSatish Balay       } else if (id == PETSCFV_CLASSID) {
18579371c9d4SSatish Balay         PetscCall(PetscFVGetNumComponents((PetscFV)obj, &Nc));
18589371c9d4SSatish Balay         Nb = 1;
18599371c9d4SSatish Balay       } else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, field);
186023f34ed2SToby Isaac       if (funcs[field]) {
18617318780aSToby Isaac         for (q = 0; q < Nq; ++q) {
18622a4e142eSMatthew G. Knepley           PetscFEGeom qgeom;
18632a4e142eSMatthew G. Knepley 
18642a4e142eSMatthew G. Knepley           qgeom.dimEmbed = fegeom.dimEmbed;
18652a4e142eSMatthew G. Knepley           qgeom.J        = &fegeom.J[q * coordDim * coordDim];
18662a4e142eSMatthew G. Knepley           qgeom.invJ     = &fegeom.invJ[q * coordDim * coordDim];
18672a4e142eSMatthew G. Knepley           qgeom.detJ     = &fegeom.detJ[q];
186863a3b9bcSJacob Faibussowitsch           PetscCheck(fegeom.detJ[q] > 0.0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Invalid determinant %g for element %" PetscInt_FMT ", quadrature points %" PetscInt_FMT, (double)fegeom.detJ[q], c, q);
18699566063dSJacob Faibussowitsch           PetscCall((*funcs[field])(coordDim, time, &coords[q * coordDim], Nc, funcVal, ctx));
1870c3e24edfSBarry Smith #if defined(needs_fix_with_return_code_argument)
1871e735a8a9SMatthew G. Knepley           if (ierr) {
18729566063dSJacob Faibussowitsch             PetscCall(DMPlexVecRestoreClosure(dm, NULL, localX, c, NULL, &x));
18739566063dSJacob Faibussowitsch             PetscCall(PetscFree6(funcVal, interpolant, coords, fegeom.detJ, fegeom.J, fegeom.invJ));
18749566063dSJacob Faibussowitsch             PetscCall(DMRestoreLocalVector(dm, &localX));
1875e735a8a9SMatthew G. Knepley           }
1876c3e24edfSBarry Smith #endif
18779566063dSJacob Faibussowitsch           if (id == PETSCFE_CLASSID) PetscCall(PetscFEInterpolate_Static((PetscFE)obj, &x[fieldOffset], &qgeom, q, interpolant));
18789566063dSJacob Faibussowitsch           else if (id == PETSCFV_CLASSID) PetscCall(PetscFVInterpolate_Static((PetscFV)obj, &x[fieldOffset], q, interpolant));
187963a3b9bcSJacob Faibussowitsch           else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, field);
1880e729f68cSMatthew G. Knepley           for (fc = 0; fc < Nc; ++fc) {
1881beaa55a6SMatthew G. Knepley             const PetscReal wt = quadWeights[q * qNc + (qNc == 1 ? 0 : qc + fc)];
18824bee2e38SMatthew G. Knepley             elemDiff += PetscSqr(PetscRealPart(interpolant[fc] - funcVal[fc])) * wt * fegeom.detJ[q];
1883e729f68cSMatthew G. Knepley           }
1884e729f68cSMatthew G. Knepley         }
188523f34ed2SToby Isaac       }
1886beaa55a6SMatthew G. Knepley       fieldOffset += Nb;
18879c3cf19fSMatthew G. Knepley       qc += Nc;
1888e729f68cSMatthew G. Knepley     }
18899566063dSJacob Faibussowitsch     PetscCall(DMPlexVecRestoreClosure(dm, NULL, localX, c, NULL, &x));
18909566063dSJacob Faibussowitsch     PetscCall(VecSetValue(D, c - cStart, elemDiff, INSERT_VALUES));
1891e729f68cSMatthew G. Knepley   }
18929566063dSJacob Faibussowitsch   PetscCall(PetscFree6(funcVal, interpolant, coords, fegeom.detJ, fegeom.J, fegeom.invJ));
18939566063dSJacob Faibussowitsch   PetscCall(DMRestoreLocalVector(dm, &localX));
18949566063dSJacob Faibussowitsch   PetscCall(VecSqrtAbs(D));
18953ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1896e729f68cSMatthew G. Knepley }
1897e729f68cSMatthew G. Knepley 
18985f0b18bfSMatthew G. Knepley /*@
189920f4b53cSBarry Smith   DMPlexComputeClementInterpolant - This function computes the L2 projection of the cellwise values of a function u onto P1
19005f0b18bfSMatthew G. Knepley 
190120f4b53cSBarry Smith   Collective
19025f0b18bfSMatthew G. Knepley 
19035f0b18bfSMatthew G. Knepley   Input Parameters:
1904a1cb98faSBarry Smith + dm   - The `DM`
19055f0b18bfSMatthew G. Knepley - locX - The coefficient vector u_h
19065f0b18bfSMatthew G. Knepley 
19075f0b18bfSMatthew G. Knepley   Output Parameter:
1908a1cb98faSBarry Smith . locC - A `Vec` which holds the Clement interpolant of the function
19095f0b18bfSMatthew G. Knepley 
19105f0b18bfSMatthew G. Knepley   Level: developer
19115f0b18bfSMatthew G. Knepley 
1912a1cb98faSBarry Smith   Note:
1913a1cb98faSBarry Smith   $ u_h(v_i) = \sum_{T_i \in support(v_i)} |T_i| u_h(T_i) / \sum_{T_i \in support(v_i)} |T_i| $ where $ |T_i| $ is the cell volume
1914a1cb98faSBarry Smith 
19151cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMProjectFunction()`, `DMComputeL2Diff()`, `DMPlexComputeL2FieldDiff()`, `DMComputeL2GradientDiff()`
19165f0b18bfSMatthew G. Knepley @*/
1917d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeClementInterpolant(DM dm, Vec locX, Vec locC)
1918d71ae5a4SJacob Faibussowitsch {
19195f0b18bfSMatthew G. Knepley   PetscInt         debug = ((DM_Plex *)dm->data)->printFEM;
19205f0b18bfSMatthew G. Knepley   DM               dmc;
19215f0b18bfSMatthew G. Knepley   PetscQuadrature  quad;
19225f0b18bfSMatthew G. Knepley   PetscScalar     *interpolant, *valsum;
19235f0b18bfSMatthew G. Knepley   PetscFEGeom      fegeom;
19245f0b18bfSMatthew G. Knepley   PetscReal       *coords;
19255f0b18bfSMatthew G. Knepley   const PetscReal *quadPoints, *quadWeights;
19265f0b18bfSMatthew G. Knepley   PetscInt         dim, cdim, Nf, f, Nc = 0, Nq, qNc, cStart, cEnd, vStart, vEnd, v;
19275f0b18bfSMatthew G. Knepley 
19285f0b18bfSMatthew G. Knepley   PetscFunctionBegin;
19299566063dSJacob Faibussowitsch   PetscCall(PetscCitationsRegister(ClementCitation, &Clementcite));
19309566063dSJacob Faibussowitsch   PetscCall(VecGetDM(locC, &dmc));
19319566063dSJacob Faibussowitsch   PetscCall(VecSet(locC, 0.0));
19329566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dm, &dim));
19339566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateDim(dm, &cdim));
19345f0b18bfSMatthew G. Knepley   fegeom.dimEmbed = cdim;
19359566063dSJacob Faibussowitsch   PetscCall(DMGetNumFields(dm, &Nf));
19365f0b18bfSMatthew G. Knepley   PetscCheck(Nf > 0, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of fields is zero!");
19375f0b18bfSMatthew G. Knepley   for (f = 0; f < Nf; ++f) {
19385f0b18bfSMatthew G. Knepley     PetscObject  obj;
19395f0b18bfSMatthew G. Knepley     PetscClassId id;
19405f0b18bfSMatthew G. Knepley     PetscInt     fNc;
19415f0b18bfSMatthew G. Knepley 
19429566063dSJacob Faibussowitsch     PetscCall(DMGetField(dm, f, NULL, &obj));
19439566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetClassId(obj, &id));
19445f0b18bfSMatthew G. Knepley     if (id == PETSCFE_CLASSID) {
19455f0b18bfSMatthew G. Knepley       PetscFE fe = (PetscFE)obj;
19465f0b18bfSMatthew G. Knepley 
19479566063dSJacob Faibussowitsch       PetscCall(PetscFEGetQuadrature(fe, &quad));
19489566063dSJacob Faibussowitsch       PetscCall(PetscFEGetNumComponents(fe, &fNc));
19495f0b18bfSMatthew G. Knepley     } else if (id == PETSCFV_CLASSID) {
19505f0b18bfSMatthew G. Knepley       PetscFV fv = (PetscFV)obj;
19515f0b18bfSMatthew G. Knepley 
19529566063dSJacob Faibussowitsch       PetscCall(PetscFVGetQuadrature(fv, &quad));
19539566063dSJacob Faibussowitsch       PetscCall(PetscFVGetNumComponents(fv, &fNc));
195463a3b9bcSJacob Faibussowitsch     } else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, f);
19555f0b18bfSMatthew G. Knepley     Nc += fNc;
19565f0b18bfSMatthew G. Knepley   }
19579566063dSJacob Faibussowitsch   PetscCall(PetscQuadratureGetData(quad, NULL, &qNc, &Nq, &quadPoints, &quadWeights));
195863a3b9bcSJacob Faibussowitsch   PetscCheck(qNc == 1, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_SIZ, "Quadrature components %" PetscInt_FMT " > 1", qNc);
19599566063dSJacob Faibussowitsch   PetscCall(PetscMalloc6(Nc * 2, &valsum, Nc, &interpolant, cdim * Nq, &coords, Nq, &fegeom.detJ, cdim * cdim * Nq, &fegeom.J, cdim * cdim * Nq, &fegeom.invJ));
19609566063dSJacob Faibussowitsch   PetscCall(DMPlexGetDepthStratum(dm, 0, &vStart, &vEnd));
19619566063dSJacob Faibussowitsch   PetscCall(DMPlexGetSimplexOrBoxCells(dm, 0, &cStart, &cEnd));
19625f0b18bfSMatthew G. Knepley   for (v = vStart; v < vEnd; ++v) {
19635f0b18bfSMatthew G. Knepley     PetscScalar volsum = 0.0;
19645f0b18bfSMatthew G. Knepley     PetscInt   *star   = NULL;
19655f0b18bfSMatthew G. Knepley     PetscInt    starSize, st, fc;
19665f0b18bfSMatthew G. Knepley 
19679566063dSJacob Faibussowitsch     PetscCall(PetscArrayzero(valsum, Nc));
19689566063dSJacob Faibussowitsch     PetscCall(DMPlexGetTransitiveClosure(dm, v, PETSC_FALSE, &starSize, &star));
19695f0b18bfSMatthew G. Knepley     for (st = 0; st < starSize * 2; st += 2) {
19705f0b18bfSMatthew G. Knepley       const PetscInt cell = star[st];
19715f0b18bfSMatthew G. Knepley       PetscScalar   *val  = &valsum[Nc];
19725f0b18bfSMatthew G. Knepley       PetscScalar   *x    = NULL;
19735f0b18bfSMatthew G. Knepley       PetscReal      vol  = 0.0;
19745f0b18bfSMatthew G. Knepley       PetscInt       foff = 0;
19755f0b18bfSMatthew G. Knepley 
19765f0b18bfSMatthew G. Knepley       if ((cell < cStart) || (cell >= cEnd)) continue;
19779566063dSJacob Faibussowitsch       PetscCall(DMPlexComputeCellGeometryFEM(dm, cell, quad, coords, fegeom.J, fegeom.invJ, fegeom.detJ));
19789566063dSJacob Faibussowitsch       PetscCall(DMPlexVecGetClosure(dm, NULL, locX, cell, NULL, &x));
19795f0b18bfSMatthew G. Knepley       for (f = 0; f < Nf; ++f) {
19805f0b18bfSMatthew G. Knepley         PetscObject  obj;
19815f0b18bfSMatthew G. Knepley         PetscClassId id;
19825f0b18bfSMatthew G. Knepley         PetscInt     Nb, fNc, q;
19835f0b18bfSMatthew G. Knepley 
19849566063dSJacob Faibussowitsch         PetscCall(PetscArrayzero(val, Nc));
19859566063dSJacob Faibussowitsch         PetscCall(DMGetField(dm, f, NULL, &obj));
19869566063dSJacob Faibussowitsch         PetscCall(PetscObjectGetClassId(obj, &id));
19879371c9d4SSatish Balay         if (id == PETSCFE_CLASSID) {
19889371c9d4SSatish Balay           PetscCall(PetscFEGetNumComponents((PetscFE)obj, &fNc));
19899371c9d4SSatish Balay           PetscCall(PetscFEGetDimension((PetscFE)obj, &Nb));
19909371c9d4SSatish Balay         } else if (id == PETSCFV_CLASSID) {
19919371c9d4SSatish Balay           PetscCall(PetscFVGetNumComponents((PetscFV)obj, &fNc));
19929371c9d4SSatish Balay           Nb = 1;
19939371c9d4SSatish Balay         } else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, f);
19945f0b18bfSMatthew G. Knepley         for (q = 0; q < Nq; ++q) {
19955f0b18bfSMatthew G. Knepley           const PetscReal wt = quadWeights[q] * fegeom.detJ[q];
19965f0b18bfSMatthew G. Knepley           PetscFEGeom     qgeom;
19975f0b18bfSMatthew G. Knepley 
19985f0b18bfSMatthew G. Knepley           qgeom.dimEmbed = fegeom.dimEmbed;
19995f0b18bfSMatthew G. Knepley           qgeom.J        = &fegeom.J[q * cdim * cdim];
20005f0b18bfSMatthew G. Knepley           qgeom.invJ     = &fegeom.invJ[q * cdim * cdim];
20015f0b18bfSMatthew G. Knepley           qgeom.detJ     = &fegeom.detJ[q];
200263a3b9bcSJacob Faibussowitsch           PetscCheck(fegeom.detJ[q] > 0.0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Invalid determinant %g for element %" PetscInt_FMT ", quadrature points %" PetscInt_FMT, (double)fegeom.detJ[q], cell, q);
20039566063dSJacob Faibussowitsch           if (id == PETSCFE_CLASSID) PetscCall(PetscFEInterpolate_Static((PetscFE)obj, &x[foff], &qgeom, q, interpolant));
200463a3b9bcSJacob Faibussowitsch           else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, f);
20055f0b18bfSMatthew G. Knepley           for (fc = 0; fc < fNc; ++fc) val[foff + fc] += interpolant[fc] * wt;
20065f0b18bfSMatthew G. Knepley           vol += wt;
20075f0b18bfSMatthew G. Knepley         }
20085f0b18bfSMatthew G. Knepley         foff += Nb;
20095f0b18bfSMatthew G. Knepley       }
20109566063dSJacob Faibussowitsch       PetscCall(DMPlexVecRestoreClosure(dm, NULL, locX, cell, NULL, &x));
20115f0b18bfSMatthew G. Knepley       for (fc = 0; fc < Nc; ++fc) valsum[fc] += val[fc];
20125f0b18bfSMatthew G. Knepley       volsum += vol;
20135f0b18bfSMatthew G. Knepley       if (debug) {
20149566063dSJacob Faibussowitsch         PetscCall(PetscPrintf(PETSC_COMM_SELF, "Vertex %" PetscInt_FMT " Cell %" PetscInt_FMT " value: [", v, cell));
20155f0b18bfSMatthew G. Knepley         for (fc = 0; fc < Nc; ++fc) {
20169566063dSJacob Faibussowitsch           if (fc) PetscCall(PetscPrintf(PETSC_COMM_SELF, ", "));
20179566063dSJacob Faibussowitsch           PetscCall(PetscPrintf(PETSC_COMM_SELF, "%g", (double)PetscRealPart(val[fc])));
20185f0b18bfSMatthew G. Knepley         }
20199566063dSJacob Faibussowitsch         PetscCall(PetscPrintf(PETSC_COMM_SELF, "]\n"));
20205f0b18bfSMatthew G. Knepley       }
20215f0b18bfSMatthew G. Knepley     }
20225f0b18bfSMatthew G. Knepley     for (fc = 0; fc < Nc; ++fc) valsum[fc] /= volsum;
20239566063dSJacob Faibussowitsch     PetscCall(DMPlexRestoreTransitiveClosure(dm, v, PETSC_FALSE, &starSize, &star));
20249566063dSJacob Faibussowitsch     PetscCall(DMPlexVecSetClosure(dmc, NULL, locC, v, valsum, INSERT_VALUES));
20255f0b18bfSMatthew G. Knepley   }
20269566063dSJacob Faibussowitsch   PetscCall(PetscFree6(valsum, interpolant, coords, fegeom.detJ, fegeom.J, fegeom.invJ));
20273ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
20285f0b18bfSMatthew G. Knepley }
20295f0b18bfSMatthew G. Knepley 
20305f0b18bfSMatthew G. Knepley /*@
203120f4b53cSBarry Smith   DMPlexComputeGradientClementInterpolant - This function computes the L2 projection of the cellwise gradient of a function u onto P1
20321555c271SMatthew G. Knepley 
203320f4b53cSBarry Smith   Collective
2034c0f8e1fdSMatthew G. Knepley 
20351555c271SMatthew G. Knepley   Input Parameters:
2036a1cb98faSBarry Smith + dm   - The `DM`
20375f0b18bfSMatthew G. Knepley - locX - The coefficient vector u_h
20381555c271SMatthew G. Knepley 
20391555c271SMatthew G. Knepley   Output Parameter:
2040a1cb98faSBarry Smith . locC - A `Vec` which holds the Clement interpolant of the gradient
20411555c271SMatthew G. Knepley 
20421555c271SMatthew G. Knepley   Level: developer
20431555c271SMatthew G. Knepley 
2044a1cb98faSBarry Smith   Note:
2045a1cb98faSBarry Smith   $\nabla u_h(v_i) = \sum_{T_i \in support(v_i)} |T_i| \nabla u_h(T_i) / \sum_{T_i \in support(v_i)} |T_i| $ where $ |T_i| $ is the cell volume
2046a1cb98faSBarry Smith 
20471cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMProjectFunction()`, `DMComputeL2Diff()`, `DMPlexComputeL2FieldDiff()`, `DMComputeL2GradientDiff()`
20481555c271SMatthew G. Knepley @*/
2049d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeGradientClementInterpolant(DM dm, Vec locX, Vec locC)
2050d71ae5a4SJacob Faibussowitsch {
2051db1066baSMatthew G. Knepley   DM_Plex         *mesh  = (DM_Plex *)dm->data;
2052db1066baSMatthew G. Knepley   PetscInt         debug = mesh->printFEM;
20531555c271SMatthew G. Knepley   DM               dmC;
20541555c271SMatthew G. Knepley   PetscQuadrature  quad;
20551555c271SMatthew G. Knepley   PetscScalar     *interpolant, *gradsum;
20564bee2e38SMatthew G. Knepley   PetscFEGeom      fegeom;
20574bee2e38SMatthew G. Knepley   PetscReal       *coords;
20581555c271SMatthew G. Knepley   const PetscReal *quadPoints, *quadWeights;
2059485ad865SMatthew G. Knepley   PetscInt         dim, coordDim, numFields, numComponents = 0, qNc, Nq, cStart, cEnd, vStart, vEnd, v, field, fieldOffset;
20601555c271SMatthew G. Knepley 
20611555c271SMatthew G. Knepley   PetscFunctionBegin;
20629566063dSJacob Faibussowitsch   PetscCall(PetscCitationsRegister(ClementCitation, &Clementcite));
20639566063dSJacob Faibussowitsch   PetscCall(VecGetDM(locC, &dmC));
20649566063dSJacob Faibussowitsch   PetscCall(VecSet(locC, 0.0));
20659566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dm, &dim));
20669566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateDim(dm, &coordDim));
20674bee2e38SMatthew G. Knepley   fegeom.dimEmbed = coordDim;
20689566063dSJacob Faibussowitsch   PetscCall(DMGetNumFields(dm, &numFields));
20695f80ce2aSJacob Faibussowitsch   PetscCheck(numFields, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of fields is zero!");
20701555c271SMatthew G. Knepley   for (field = 0; field < numFields; ++field) {
20711555c271SMatthew G. Knepley     PetscObject  obj;
20721555c271SMatthew G. Knepley     PetscClassId id;
20731555c271SMatthew G. Knepley     PetscInt     Nc;
20741555c271SMatthew G. Knepley 
20759566063dSJacob Faibussowitsch     PetscCall(DMGetField(dm, field, NULL, &obj));
20769566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetClassId(obj, &id));
20771555c271SMatthew G. Knepley     if (id == PETSCFE_CLASSID) {
20781555c271SMatthew G. Knepley       PetscFE fe = (PetscFE)obj;
20791555c271SMatthew G. Knepley 
20809566063dSJacob Faibussowitsch       PetscCall(PetscFEGetQuadrature(fe, &quad));
20819566063dSJacob Faibussowitsch       PetscCall(PetscFEGetNumComponents(fe, &Nc));
20821555c271SMatthew G. Knepley     } else if (id == PETSCFV_CLASSID) {
20831555c271SMatthew G. Knepley       PetscFV fv = (PetscFV)obj;
20841555c271SMatthew G. Knepley 
20859566063dSJacob Faibussowitsch       PetscCall(PetscFVGetQuadrature(fv, &quad));
20869566063dSJacob Faibussowitsch       PetscCall(PetscFVGetNumComponents(fv, &Nc));
208763a3b9bcSJacob Faibussowitsch     } else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, field);
20881555c271SMatthew G. Knepley     numComponents += Nc;
20891555c271SMatthew G. Knepley   }
20909566063dSJacob Faibussowitsch   PetscCall(PetscQuadratureGetData(quad, NULL, &qNc, &Nq, &quadPoints, &quadWeights));
209163a3b9bcSJacob Faibussowitsch   PetscCheck(!(qNc != 1) || !(qNc != numComponents), PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_SIZ, "Quadrature components %" PetscInt_FMT " != %" PetscInt_FMT " field components", qNc, numComponents);
20929566063dSJacob Faibussowitsch   PetscCall(PetscMalloc6(coordDim * numComponents * 2, &gradsum, coordDim * numComponents, &interpolant, coordDim * Nq, &coords, Nq, &fegeom.detJ, coordDim * coordDim * Nq, &fegeom.J, coordDim * coordDim * Nq, &fegeom.invJ));
20939566063dSJacob Faibussowitsch   PetscCall(DMPlexGetDepthStratum(dm, 0, &vStart, &vEnd));
20949566063dSJacob Faibussowitsch   PetscCall(DMPlexGetSimplexOrBoxCells(dm, 0, &cStart, &cEnd));
20951555c271SMatthew G. Knepley   for (v = vStart; v < vEnd; ++v) {
20961555c271SMatthew G. Knepley     PetscScalar volsum = 0.0;
20971555c271SMatthew G. Knepley     PetscInt   *star   = NULL;
20981555c271SMatthew G. Knepley     PetscInt    starSize, st, d, fc;
20991555c271SMatthew G. Knepley 
21009566063dSJacob Faibussowitsch     PetscCall(PetscArrayzero(gradsum, coordDim * numComponents));
21019566063dSJacob Faibussowitsch     PetscCall(DMPlexGetTransitiveClosure(dm, v, PETSC_FALSE, &starSize, &star));
21021555c271SMatthew G. Knepley     for (st = 0; st < starSize * 2; st += 2) {
21031555c271SMatthew G. Knepley       const PetscInt cell = star[st];
21041555c271SMatthew G. Knepley       PetscScalar   *grad = &gradsum[coordDim * numComponents];
21051555c271SMatthew G. Knepley       PetscScalar   *x    = NULL;
21061555c271SMatthew G. Knepley       PetscReal      vol  = 0.0;
21071555c271SMatthew G. Knepley 
21081555c271SMatthew G. Knepley       if ((cell < cStart) || (cell >= cEnd)) continue;
21099566063dSJacob Faibussowitsch       PetscCall(DMPlexComputeCellGeometryFEM(dm, cell, quad, coords, fegeom.J, fegeom.invJ, fegeom.detJ));
21109566063dSJacob Faibussowitsch       PetscCall(DMPlexVecGetClosure(dm, NULL, locX, cell, NULL, &x));
21111555c271SMatthew G. Knepley       for (field = 0, fieldOffset = 0; field < numFields; ++field) {
21121555c271SMatthew G. Knepley         PetscObject  obj;
21131555c271SMatthew G. Knepley         PetscClassId id;
21141555c271SMatthew G. Knepley         PetscInt     Nb, Nc, q, qc = 0;
21151555c271SMatthew G. Knepley 
21169566063dSJacob Faibussowitsch         PetscCall(PetscArrayzero(grad, coordDim * numComponents));
21179566063dSJacob Faibussowitsch         PetscCall(DMGetField(dm, field, NULL, &obj));
21189566063dSJacob Faibussowitsch         PetscCall(PetscObjectGetClassId(obj, &id));
21199371c9d4SSatish Balay         if (id == PETSCFE_CLASSID) {
21209371c9d4SSatish Balay           PetscCall(PetscFEGetNumComponents((PetscFE)obj, &Nc));
21219371c9d4SSatish Balay           PetscCall(PetscFEGetDimension((PetscFE)obj, &Nb));
21229371c9d4SSatish Balay         } else if (id == PETSCFV_CLASSID) {
21239371c9d4SSatish Balay           PetscCall(PetscFVGetNumComponents((PetscFV)obj, &Nc));
21249371c9d4SSatish Balay           Nb = 1;
21259371c9d4SSatish Balay         } else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, field);
21261555c271SMatthew G. Knepley         for (q = 0; q < Nq; ++q) {
21272a4e142eSMatthew G. Knepley           PetscFEGeom qgeom;
21282a4e142eSMatthew G. Knepley 
21292a4e142eSMatthew G. Knepley           qgeom.dimEmbed = fegeom.dimEmbed;
21302a4e142eSMatthew G. Knepley           qgeom.J        = &fegeom.J[q * coordDim * coordDim];
21312a4e142eSMatthew G. Knepley           qgeom.invJ     = &fegeom.invJ[q * coordDim * coordDim];
21322a4e142eSMatthew G. Knepley           qgeom.detJ     = &fegeom.detJ[q];
213363a3b9bcSJacob Faibussowitsch           PetscCheck(fegeom.detJ[q] > 0.0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Invalid determinant %g for element %" PetscInt_FMT ", quadrature points %" PetscInt_FMT, (double)fegeom.detJ[q], cell, q);
21349566063dSJacob Faibussowitsch           if (id == PETSCFE_CLASSID) PetscCall(PetscFEInterpolateGradient_Static((PetscFE)obj, 1, &x[fieldOffset], &qgeom, q, interpolant));
213563a3b9bcSJacob Faibussowitsch           else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, field);
21361555c271SMatthew G. Knepley           for (fc = 0; fc < Nc; ++fc) {
213753d2db2dSJoe Wallwork             const PetscReal wt = quadWeights[q * qNc + qc];
21381555c271SMatthew G. Knepley 
21394bee2e38SMatthew G. Knepley             for (d = 0; d < coordDim; ++d) grad[fc * coordDim + d] += interpolant[fc * dim + d] * wt * fegeom.detJ[q];
21401555c271SMatthew G. Knepley           }
21414bee2e38SMatthew G. Knepley           vol += quadWeights[q * qNc] * fegeom.detJ[q];
21421555c271SMatthew G. Knepley         }
21431555c271SMatthew G. Knepley         fieldOffset += Nb;
21441555c271SMatthew G. Knepley         qc += Nc;
21451555c271SMatthew G. Knepley       }
21469566063dSJacob Faibussowitsch       PetscCall(DMPlexVecRestoreClosure(dm, NULL, locX, cell, NULL, &x));
2147f8527842SMatthew G. Knepley       for (fc = 0; fc < numComponents; ++fc) {
2148ad540459SPierre Jolivet         for (d = 0; d < coordDim; ++d) gradsum[fc * coordDim + d] += grad[fc * coordDim + d];
2149f8527842SMatthew G. Knepley       }
2150f8527842SMatthew G. Knepley       volsum += vol;
2151db1066baSMatthew G. Knepley       if (debug) {
21529566063dSJacob Faibussowitsch         PetscCall(PetscPrintf(PETSC_COMM_SELF, "Vertex %" PetscInt_FMT " Cell %" PetscInt_FMT " gradient: [", v, cell));
21531555c271SMatthew G. Knepley         for (fc = 0; fc < numComponents; ++fc) {
21541555c271SMatthew G. Knepley           for (d = 0; d < coordDim; ++d) {
21559566063dSJacob Faibussowitsch             if (fc || d > 0) PetscCall(PetscPrintf(PETSC_COMM_SELF, ", "));
21569566063dSJacob Faibussowitsch             PetscCall(PetscPrintf(PETSC_COMM_SELF, "%g", (double)PetscRealPart(grad[fc * coordDim + d])));
21571555c271SMatthew G. Knepley           }
21581555c271SMatthew G. Knepley         }
21599566063dSJacob Faibussowitsch         PetscCall(PetscPrintf(PETSC_COMM_SELF, "]\n"));
2160db1066baSMatthew G. Knepley       }
21611555c271SMatthew G. Knepley     }
21621555c271SMatthew G. Knepley     for (fc = 0; fc < numComponents; ++fc) {
21631555c271SMatthew G. Knepley       for (d = 0; d < coordDim; ++d) gradsum[fc * coordDim + d] /= volsum;
21641555c271SMatthew G. Knepley     }
21659566063dSJacob Faibussowitsch     PetscCall(DMPlexRestoreTransitiveClosure(dm, v, PETSC_FALSE, &starSize, &star));
21669566063dSJacob Faibussowitsch     PetscCall(DMPlexVecSetClosure(dmC, NULL, locC, v, gradsum, INSERT_VALUES));
21671555c271SMatthew G. Knepley   }
21689566063dSJacob Faibussowitsch   PetscCall(PetscFree6(gradsum, interpolant, coords, fegeom.detJ, fegeom.J, fegeom.invJ));
21693ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
21701555c271SMatthew G. Knepley }
21711555c271SMatthew G. Knepley 
21726493148fSStefano Zampini PetscErrorCode DMPlexComputeIntegral_Internal(DM dm, Vec locX, PetscInt cStart, PetscInt cEnd, PetscScalar *cintegral, void *user)
2173d71ae5a4SJacob Faibussowitsch {
2174cbf8eb3cSStefano Zampini   DM           dmAux = NULL, plexA = NULL;
217561aaff12SToby Isaac   PetscDS      prob, probAux       = NULL;
217673d901b8SMatthew G. Knepley   PetscSection section, sectionAux;
21776493148fSStefano Zampini   Vec          locA;
2178c330f8ffSToby Isaac   PetscInt     dim, numCells = cEnd - cStart, c, f;
2179c330f8ffSToby Isaac   PetscBool    useFVM = PETSC_FALSE;
2180338f77d5SMatthew G. Knepley   /* DS */
2181338f77d5SMatthew G. Knepley   PetscInt           Nf, totDim, *uOff, *uOff_x, numConstants;
2182338f77d5SMatthew G. Knepley   PetscInt           NfAux, totDimAux, *aOff;
21838e3a54c0SPierre Jolivet   PetscScalar       *u, *a = NULL;
2184338f77d5SMatthew G. Knepley   const PetscScalar *constants;
2185338f77d5SMatthew G. Knepley   /* Geometry */
2186c330f8ffSToby Isaac   PetscFEGeom       *cgeomFEM;
2187338f77d5SMatthew G. Knepley   DM                 dmGrad;
2188c330f8ffSToby Isaac   PetscQuadrature    affineQuad      = NULL;
2189338f77d5SMatthew G. Knepley   Vec                cellGeometryFVM = NULL, faceGeometryFVM = NULL, locGrad = NULL;
2190b5a3613cSMatthew G. Knepley   PetscFVCellGeom   *cgeomFVM;
2191338f77d5SMatthew G. Knepley   const PetscScalar *lgrad;
2192b7260050SToby Isaac   PetscInt           maxDegree;
2193c330f8ffSToby Isaac   DMField            coordField;
2194c330f8ffSToby Isaac   IS                 cellIS;
219573d901b8SMatthew G. Knepley 
219673d901b8SMatthew G. Knepley   PetscFunctionBegin;
21979566063dSJacob Faibussowitsch   PetscCall(DMGetDS(dm, &prob));
21989566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dm, &dim));
21999566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dm, &section));
22009566063dSJacob Faibussowitsch   PetscCall(DMGetNumFields(dm, &Nf));
2201338f77d5SMatthew G. Knepley   /* Determine which discretizations we have */
2202b5a3613cSMatthew G. Knepley   for (f = 0; f < Nf; ++f) {
2203b5a3613cSMatthew G. Knepley     PetscObject  obj;
2204b5a3613cSMatthew G. Knepley     PetscClassId id;
2205b5a3613cSMatthew G. Knepley 
22069566063dSJacob Faibussowitsch     PetscCall(PetscDSGetDiscretization(prob, f, &obj));
22079566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetClassId(obj, &id));
2208338f77d5SMatthew G. Knepley     if (id == PETSCFV_CLASSID) useFVM = PETSC_TRUE;
2209338f77d5SMatthew G. Knepley   }
2210338f77d5SMatthew G. Knepley   /* Read DS information */
22119566063dSJacob Faibussowitsch   PetscCall(PetscDSGetTotalDimension(prob, &totDim));
22129566063dSJacob Faibussowitsch   PetscCall(PetscDSGetComponentOffsets(prob, &uOff));
22139566063dSJacob Faibussowitsch   PetscCall(PetscDSGetComponentDerivativeOffsets(prob, &uOff_x));
22149566063dSJacob Faibussowitsch   PetscCall(ISCreateStride(PETSC_COMM_SELF, numCells, cStart, 1, &cellIS));
22159566063dSJacob Faibussowitsch   PetscCall(PetscDSGetConstants(prob, &numConstants, &constants));
2216338f77d5SMatthew G. Knepley   /* Read Auxiliary DS information */
22179566063dSJacob Faibussowitsch   PetscCall(DMGetAuxiliaryVec(dm, NULL, 0, 0, &locA));
22189a2a23afSMatthew G. Knepley   if (locA) {
22199566063dSJacob Faibussowitsch     PetscCall(VecGetDM(locA, &dmAux));
2220cbf8eb3cSStefano Zampini     PetscCall(DMConvert(dmAux, DMPLEX, &plexA));
22219566063dSJacob Faibussowitsch     PetscCall(DMGetDS(dmAux, &probAux));
22229566063dSJacob Faibussowitsch     PetscCall(PetscDSGetNumFields(probAux, &NfAux));
22239566063dSJacob Faibussowitsch     PetscCall(DMGetLocalSection(dmAux, &sectionAux));
22249566063dSJacob Faibussowitsch     PetscCall(PetscDSGetTotalDimension(probAux, &totDimAux));
22259566063dSJacob Faibussowitsch     PetscCall(PetscDSGetComponentOffsets(probAux, &aOff));
2226338f77d5SMatthew G. Knepley   }
2227338f77d5SMatthew G. Knepley   /* Allocate data  arrays */
22289566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(numCells * totDim, &u));
22299566063dSJacob Faibussowitsch   if (dmAux) PetscCall(PetscMalloc1(numCells * totDimAux, &a));
2230338f77d5SMatthew G. Knepley   /* Read out geometry */
22319566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateField(dm, &coordField));
22329566063dSJacob Faibussowitsch   PetscCall(DMFieldGetDegree(coordField, cellIS, NULL, &maxDegree));
2233b7260050SToby Isaac   if (maxDegree <= 1) {
22349566063dSJacob Faibussowitsch     PetscCall(DMFieldCreateDefaultQuadrature(coordField, cellIS, &affineQuad));
223548a46eb9SPierre Jolivet     if (affineQuad) PetscCall(DMFieldCreateFEGeom(coordField, cellIS, affineQuad, PETSC_FALSE, &cgeomFEM));
2236b5a3613cSMatthew G. Knepley   }
2237b5a3613cSMatthew G. Knepley   if (useFVM) {
2238338f77d5SMatthew G. Knepley     PetscFV   fv = NULL;
2239b5a3613cSMatthew G. Knepley     Vec       grad;
2240b5a3613cSMatthew G. Knepley     PetscInt  fStart, fEnd;
2241b5a3613cSMatthew G. Knepley     PetscBool compGrad;
2242b5a3613cSMatthew G. Knepley 
2243338f77d5SMatthew G. Knepley     for (f = 0; f < Nf; ++f) {
2244338f77d5SMatthew G. Knepley       PetscObject  obj;
2245338f77d5SMatthew G. Knepley       PetscClassId id;
2246338f77d5SMatthew G. Knepley 
22479566063dSJacob Faibussowitsch       PetscCall(PetscDSGetDiscretization(prob, f, &obj));
22489566063dSJacob Faibussowitsch       PetscCall(PetscObjectGetClassId(obj, &id));
22499371c9d4SSatish Balay       if (id == PETSCFV_CLASSID) {
22509371c9d4SSatish Balay         fv = (PetscFV)obj;
22519371c9d4SSatish Balay         break;
22529371c9d4SSatish Balay       }
2253338f77d5SMatthew G. Knepley     }
22549566063dSJacob Faibussowitsch     PetscCall(PetscFVGetComputeGradients(fv, &compGrad));
22559566063dSJacob Faibussowitsch     PetscCall(PetscFVSetComputeGradients(fv, PETSC_TRUE));
22569566063dSJacob Faibussowitsch     PetscCall(DMPlexComputeGeometryFVM(dm, &cellGeometryFVM, &faceGeometryFVM));
22579566063dSJacob Faibussowitsch     PetscCall(DMPlexComputeGradientFVM(dm, fv, faceGeometryFVM, cellGeometryFVM, &dmGrad));
22589566063dSJacob Faibussowitsch     PetscCall(PetscFVSetComputeGradients(fv, compGrad));
22599566063dSJacob Faibussowitsch     PetscCall(VecGetArrayRead(cellGeometryFVM, (const PetscScalar **)&cgeomFVM));
2260b5a3613cSMatthew G. Knepley     /* Reconstruct and limit cell gradients */
22619566063dSJacob Faibussowitsch     PetscCall(DMPlexGetHeightStratum(dm, 1, &fStart, &fEnd));
22629566063dSJacob Faibussowitsch     PetscCall(DMGetGlobalVector(dmGrad, &grad));
22639566063dSJacob Faibussowitsch     PetscCall(DMPlexReconstructGradients_Internal(dm, fv, fStart, fEnd, faceGeometryFVM, cellGeometryFVM, locX, grad));
2264b5a3613cSMatthew G. Knepley     /* Communicate gradient values */
22659566063dSJacob Faibussowitsch     PetscCall(DMGetLocalVector(dmGrad, &locGrad));
22669566063dSJacob Faibussowitsch     PetscCall(DMGlobalToLocalBegin(dmGrad, grad, INSERT_VALUES, locGrad));
22679566063dSJacob Faibussowitsch     PetscCall(DMGlobalToLocalEnd(dmGrad, grad, INSERT_VALUES, locGrad));
22689566063dSJacob Faibussowitsch     PetscCall(DMRestoreGlobalVector(dmGrad, &grad));
2269b5a3613cSMatthew G. Knepley     /* Handle non-essential (e.g. outflow) boundary values */
22709566063dSJacob Faibussowitsch     PetscCall(DMPlexInsertBoundaryValues(dm, PETSC_FALSE, locX, 0.0, faceGeometryFVM, cellGeometryFVM, locGrad));
22719566063dSJacob Faibussowitsch     PetscCall(VecGetArrayRead(locGrad, &lgrad));
2272b5a3613cSMatthew G. Knepley   }
2273338f77d5SMatthew G. Knepley   /* Read out data from inputs */
227473d901b8SMatthew G. Knepley   for (c = cStart; c < cEnd; ++c) {
227573d901b8SMatthew G. Knepley     PetscScalar *x = NULL;
227673d901b8SMatthew G. Knepley     PetscInt     i;
227773d901b8SMatthew G. Knepley 
22789566063dSJacob Faibussowitsch     PetscCall(DMPlexVecGetClosure(dm, section, locX, c, NULL, &x));
22790f2d7e86SMatthew G. Knepley     for (i = 0; i < totDim; ++i) u[c * totDim + i] = x[i];
22809566063dSJacob Faibussowitsch     PetscCall(DMPlexVecRestoreClosure(dm, section, locX, c, NULL, &x));
228173d901b8SMatthew G. Knepley     if (dmAux) {
2282cbf8eb3cSStefano Zampini       PetscCall(DMPlexVecGetClosure(plexA, sectionAux, locA, c, NULL, &x));
22830f2d7e86SMatthew G. Knepley       for (i = 0; i < totDimAux; ++i) a[c * totDimAux + i] = x[i];
2284cbf8eb3cSStefano Zampini       PetscCall(DMPlexVecRestoreClosure(plexA, sectionAux, locA, c, NULL, &x));
228573d901b8SMatthew G. Knepley     }
228673d901b8SMatthew G. Knepley   }
2287338f77d5SMatthew G. Knepley   /* Do integration for each field */
228873d901b8SMatthew G. Knepley   for (f = 0; f < Nf; ++f) {
2289c1f031eeSMatthew G. Knepley     PetscObject  obj;
2290c1f031eeSMatthew G. Knepley     PetscClassId id;
2291c1f031eeSMatthew G. Knepley     PetscInt     numChunks, numBatches, batchSize, numBlocks, blockSize, Ne, Nr, offset;
229273d901b8SMatthew G. Knepley 
22939566063dSJacob Faibussowitsch     PetscCall(PetscDSGetDiscretization(prob, f, &obj));
22949566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetClassId(obj, &id));
2295c1f031eeSMatthew G. Knepley     if (id == PETSCFE_CLASSID) {
2296c1f031eeSMatthew G. Knepley       PetscFE         fe = (PetscFE)obj;
2297c1f031eeSMatthew G. Knepley       PetscQuadrature q;
2298c330f8ffSToby Isaac       PetscFEGeom    *chunkGeom = NULL;
2299c1f031eeSMatthew G. Knepley       PetscInt        Nq, Nb;
2300c1f031eeSMatthew G. Knepley 
23019566063dSJacob Faibussowitsch       PetscCall(PetscFEGetTileSizes(fe, NULL, &numBlocks, NULL, &numBatches));
23029566063dSJacob Faibussowitsch       PetscCall(PetscFEGetQuadrature(fe, &q));
23039566063dSJacob Faibussowitsch       PetscCall(PetscQuadratureGetData(q, NULL, NULL, &Nq, NULL, NULL));
23049566063dSJacob Faibussowitsch       PetscCall(PetscFEGetDimension(fe, &Nb));
2305c1f031eeSMatthew G. Knepley       blockSize = Nb * Nq;
230673d901b8SMatthew G. Knepley       batchSize = numBlocks * blockSize;
23079566063dSJacob Faibussowitsch       PetscCall(PetscFESetTileSizes(fe, blockSize, numBlocks, batchSize, numBatches));
230873d901b8SMatthew G. Knepley       numChunks = numCells / (numBatches * batchSize);
230973d901b8SMatthew G. Knepley       Ne        = numChunks * numBatches * batchSize;
231073d901b8SMatthew G. Knepley       Nr        = numCells % (numBatches * batchSize);
231173d901b8SMatthew G. Knepley       offset    = numCells - Nr;
231248a46eb9SPierre Jolivet       if (!affineQuad) PetscCall(DMFieldCreateFEGeom(coordField, cellIS, q, PETSC_FALSE, &cgeomFEM));
23139566063dSJacob Faibussowitsch       PetscCall(PetscFEGeomGetChunk(cgeomFEM, 0, offset, &chunkGeom));
23149566063dSJacob Faibussowitsch       PetscCall(PetscFEIntegrate(prob, f, Ne, chunkGeom, u, probAux, a, cintegral));
23159566063dSJacob Faibussowitsch       PetscCall(PetscFEGeomGetChunk(cgeomFEM, offset, numCells, &chunkGeom));
23168e3a54c0SPierre Jolivet       PetscCall(PetscFEIntegrate(prob, f, Nr, chunkGeom, &u[offset * totDim], probAux, PetscSafePointerPlusOffset(a, offset * totDimAux), &cintegral[offset * Nf]));
23179566063dSJacob Faibussowitsch       PetscCall(PetscFEGeomRestoreChunk(cgeomFEM, offset, numCells, &chunkGeom));
231848a46eb9SPierre Jolivet       if (!affineQuad) PetscCall(PetscFEGeomDestroy(&cgeomFEM));
2319c1f031eeSMatthew G. Knepley     } else if (id == PETSCFV_CLASSID) {
2320c1f031eeSMatthew G. Knepley       PetscInt       foff;
2321420e96edSMatthew G. Knepley       PetscPointFunc obj_func;
2322b69edc29SMatthew G. Knepley       PetscScalar    lint;
2323c1f031eeSMatthew G. Knepley 
23249566063dSJacob Faibussowitsch       PetscCall(PetscDSGetObjective(prob, f, &obj_func));
23259566063dSJacob Faibussowitsch       PetscCall(PetscDSGetFieldOffset(prob, f, &foff));
2326c1f031eeSMatthew G. Knepley       if (obj_func) {
2327c1f031eeSMatthew G. Knepley         for (c = 0; c < numCells; ++c) {
2328b5a3613cSMatthew G. Knepley           PetscScalar *u_x;
2329b5a3613cSMatthew G. Knepley 
23309566063dSJacob Faibussowitsch           PetscCall(DMPlexPointLocalRead(dmGrad, c, lgrad, &u_x));
2331338f77d5SMatthew G. Knepley           obj_func(dim, Nf, NfAux, uOff, uOff_x, &u[totDim * c + foff], NULL, u_x, aOff, NULL, &a[totDimAux * c], NULL, NULL, 0.0, cgeomFVM[c].centroid, numConstants, constants, &lint);
2332338f77d5SMatthew G. Knepley           cintegral[c * Nf + f] += PetscRealPart(lint) * cgeomFVM[c].volume;
233373d901b8SMatthew G. Knepley         }
2334c1f031eeSMatthew G. Knepley       }
233563a3b9bcSJacob Faibussowitsch     } else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, f);
2336c1f031eeSMatthew G. Knepley   }
2337338f77d5SMatthew G. Knepley   /* Cleanup data arrays */
2338b5a3613cSMatthew G. Knepley   if (useFVM) {
23399566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayRead(locGrad, &lgrad));
23409566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayRead(cellGeometryFVM, (const PetscScalar **)&cgeomFVM));
23419566063dSJacob Faibussowitsch     PetscCall(DMRestoreLocalVector(dmGrad, &locGrad));
23429566063dSJacob Faibussowitsch     PetscCall(VecDestroy(&faceGeometryFVM));
23439566063dSJacob Faibussowitsch     PetscCall(VecDestroy(&cellGeometryFVM));
23449566063dSJacob Faibussowitsch     PetscCall(DMDestroy(&dmGrad));
2345b5a3613cSMatthew G. Knepley   }
23469566063dSJacob Faibussowitsch   if (dmAux) PetscCall(PetscFree(a));
2347cbf8eb3cSStefano Zampini   PetscCall(DMDestroy(&plexA));
23489566063dSJacob Faibussowitsch   PetscCall(PetscFree(u));
2349338f77d5SMatthew G. Knepley   /* Cleanup */
235048a46eb9SPierre Jolivet   if (affineQuad) PetscCall(PetscFEGeomDestroy(&cgeomFEM));
23519566063dSJacob Faibussowitsch   PetscCall(PetscQuadratureDestroy(&affineQuad));
23529566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&cellIS));
23533ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2354338f77d5SMatthew G. Knepley }
2355338f77d5SMatthew G. Knepley 
2356338f77d5SMatthew G. Knepley /*@
2357338f77d5SMatthew G. Knepley   DMPlexComputeIntegralFEM - Form the integral over the domain from the global input X using pointwise functions specified by the user
2358338f77d5SMatthew G. Knepley 
2359338f77d5SMatthew G. Knepley   Input Parameters:
2360338f77d5SMatthew G. Knepley + dm   - The mesh
2361338f77d5SMatthew G. Knepley . X    - Global input vector
2362338f77d5SMatthew G. Knepley - user - The user context
2363338f77d5SMatthew G. Knepley 
2364338f77d5SMatthew G. Knepley   Output Parameter:
2365338f77d5SMatthew G. Knepley . integral - Integral for each field
2366338f77d5SMatthew G. Knepley 
2367338f77d5SMatthew G. Knepley   Level: developer
2368338f77d5SMatthew G. Knepley 
23691cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexSNESComputeResidualFEM()`
2370338f77d5SMatthew G. Knepley @*/
2371d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeIntegralFEM(DM dm, Vec X, PetscScalar *integral, void *user)
2372d71ae5a4SJacob Faibussowitsch {
2373cbf8eb3cSStefano Zampini   PetscInt     printFEM;
2374b8feb594SMatthew G. Knepley   PetscScalar *cintegral, *lintegral;
2375412e9a14SMatthew G. Knepley   PetscInt     Nf, f, cellHeight, cStart, cEnd, cell;
23766493148fSStefano Zampini   Vec          locX;
2377338f77d5SMatthew G. Knepley 
2378338f77d5SMatthew G. Knepley   PetscFunctionBegin;
2379338f77d5SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
2380338f77d5SMatthew G. Knepley   PetscValidHeaderSpecific(X, VEC_CLASSID, 2);
23814f572ea9SToby Isaac   PetscAssertPointer(integral, 3);
23829566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(DMPLEX_IntegralFEM, dm, 0, 0, 0));
2383cbf8eb3cSStefano Zampini   PetscCall(DMPlexConvertPlex(dm, &dm, PETSC_TRUE));
23849566063dSJacob Faibussowitsch   PetscCall(DMGetNumFields(dm, &Nf));
23859566063dSJacob Faibussowitsch   PetscCall(DMPlexGetVTKCellHeight(dm, &cellHeight));
23869566063dSJacob Faibussowitsch   PetscCall(DMPlexGetSimplexOrBoxCells(dm, cellHeight, &cStart, &cEnd));
2387338f77d5SMatthew G. Knepley   /* TODO Introduce a loop over large chunks (right now this is a single chunk) */
23889566063dSJacob Faibussowitsch   PetscCall(PetscCalloc2(Nf, &lintegral, (cEnd - cStart) * Nf, &cintegral));
23896493148fSStefano Zampini   /* Get local solution with boundary values */
23906493148fSStefano Zampini   PetscCall(DMGetLocalVector(dm, &locX));
23916493148fSStefano Zampini   PetscCall(DMPlexInsertBoundaryValues(dm, PETSC_TRUE, locX, 0.0, NULL, NULL, NULL));
23926493148fSStefano Zampini   PetscCall(DMGlobalToLocalBegin(dm, X, INSERT_VALUES, locX));
23936493148fSStefano Zampini   PetscCall(DMGlobalToLocalEnd(dm, X, INSERT_VALUES, locX));
23946493148fSStefano Zampini   PetscCall(DMPlexComputeIntegral_Internal(dm, locX, cStart, cEnd, cintegral, user));
23956493148fSStefano Zampini   PetscCall(DMRestoreLocalVector(dm, &locX));
2396cbf8eb3cSStefano Zampini   printFEM = ((DM_Plex *)dm->data)->printFEM;
2397338f77d5SMatthew G. Knepley   /* Sum up values */
2398338f77d5SMatthew G. Knepley   for (cell = cStart; cell < cEnd; ++cell) {
2399338f77d5SMatthew G. Knepley     const PetscInt c = cell - cStart;
2400338f77d5SMatthew G. Knepley 
2401cbf8eb3cSStefano Zampini     if (printFEM > 1) PetscCall(DMPrintCellVector(cell, "Cell Integral", Nf, &cintegral[c * Nf]));
2402b8feb594SMatthew G. Knepley     for (f = 0; f < Nf; ++f) lintegral[f] += cintegral[c * Nf + f];
2403338f77d5SMatthew G. Knepley   }
24041c2dc1cbSBarry Smith   PetscCall(MPIU_Allreduce(lintegral, integral, Nf, MPIU_SCALAR, MPIU_SUM, PetscObjectComm((PetscObject)dm)));
2405cbf8eb3cSStefano Zampini   if (printFEM) {
24069566063dSJacob Faibussowitsch     PetscCall(PetscPrintf(PetscObjectComm((PetscObject)dm), "Integral:"));
24079566063dSJacob Faibussowitsch     for (f = 0; f < Nf; ++f) PetscCall(PetscPrintf(PetscObjectComm((PetscObject)dm), " %g", (double)PetscRealPart(integral[f])));
24089566063dSJacob Faibussowitsch     PetscCall(PetscPrintf(PetscObjectComm((PetscObject)dm), "\n"));
240973d901b8SMatthew G. Knepley   }
24109566063dSJacob Faibussowitsch   PetscCall(PetscFree2(lintegral, cintegral));
24119566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(DMPLEX_IntegralFEM, dm, 0, 0, 0));
2412cbf8eb3cSStefano Zampini   PetscCall(DMDestroy(&dm));
24133ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2414338f77d5SMatthew G. Knepley }
2415338f77d5SMatthew G. Knepley 
2416338f77d5SMatthew G. Knepley /*@
2417338f77d5SMatthew G. Knepley   DMPlexComputeCellwiseIntegralFEM - Form the vector of cellwise integrals F from the global input X using pointwise functions specified by the user
2418338f77d5SMatthew G. Knepley 
2419338f77d5SMatthew G. Knepley   Input Parameters:
2420338f77d5SMatthew G. Knepley + dm   - The mesh
2421338f77d5SMatthew G. Knepley . X    - Global input vector
2422338f77d5SMatthew G. Knepley - user - The user context
2423338f77d5SMatthew G. Knepley 
2424338f77d5SMatthew G. Knepley   Output Parameter:
242560225df5SJacob Faibussowitsch . F - Cellwise integrals for each field
2426338f77d5SMatthew G. Knepley 
2427338f77d5SMatthew G. Knepley   Level: developer
2428338f77d5SMatthew G. Knepley 
24291cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexSNESComputeResidualFEM()`
2430338f77d5SMatthew G. Knepley @*/
2431d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeCellwiseIntegralFEM(DM dm, Vec X, Vec F, void *user)
2432d71ae5a4SJacob Faibussowitsch {
2433cbf8eb3cSStefano Zampini   PetscInt     printFEM;
2434338f77d5SMatthew G. Knepley   DM           dmF;
2435338f77d5SMatthew G. Knepley   PetscSection sectionF;
2436338f77d5SMatthew G. Knepley   PetscScalar *cintegral, *af;
2437412e9a14SMatthew G. Knepley   PetscInt     Nf, f, cellHeight, cStart, cEnd, cell;
24386493148fSStefano Zampini   Vec          locX;
2439338f77d5SMatthew G. Knepley 
2440338f77d5SMatthew G. Knepley   PetscFunctionBegin;
2441338f77d5SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
2442338f77d5SMatthew G. Knepley   PetscValidHeaderSpecific(X, VEC_CLASSID, 2);
2443338f77d5SMatthew G. Knepley   PetscValidHeaderSpecific(F, VEC_CLASSID, 3);
24449566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(DMPLEX_IntegralFEM, dm, 0, 0, 0));
2445cbf8eb3cSStefano Zampini   PetscCall(DMPlexConvertPlex(dm, &dm, PETSC_TRUE));
24469566063dSJacob Faibussowitsch   PetscCall(DMGetNumFields(dm, &Nf));
24479566063dSJacob Faibussowitsch   PetscCall(DMPlexGetVTKCellHeight(dm, &cellHeight));
24489566063dSJacob Faibussowitsch   PetscCall(DMPlexGetSimplexOrBoxCells(dm, cellHeight, &cStart, &cEnd));
2449338f77d5SMatthew G. Knepley   /* TODO Introduce a loop over large chunks (right now this is a single chunk) */
24509566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1((cEnd - cStart) * Nf, &cintegral));
24516493148fSStefano Zampini   /* Get local solution with boundary values */
24526493148fSStefano Zampini   PetscCall(DMGetLocalVector(dm, &locX));
24536493148fSStefano Zampini   PetscCall(DMPlexInsertBoundaryValues(dm, PETSC_TRUE, locX, 0.0, NULL, NULL, NULL));
24546493148fSStefano Zampini   PetscCall(DMGlobalToLocalBegin(dm, X, INSERT_VALUES, locX));
24556493148fSStefano Zampini   PetscCall(DMGlobalToLocalEnd(dm, X, INSERT_VALUES, locX));
24566493148fSStefano Zampini   PetscCall(DMPlexComputeIntegral_Internal(dm, locX, cStart, cEnd, cintegral, user));
24576493148fSStefano Zampini   PetscCall(DMRestoreLocalVector(dm, &locX));
2458338f77d5SMatthew G. Knepley   /* Put values in F */
24599566063dSJacob Faibussowitsch   PetscCall(VecGetDM(F, &dmF));
24609566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dmF, &sectionF));
24619566063dSJacob Faibussowitsch   PetscCall(VecGetArray(F, &af));
2462cbf8eb3cSStefano Zampini   printFEM = ((DM_Plex *)dm->data)->printFEM;
2463338f77d5SMatthew G. Knepley   for (cell = cStart; cell < cEnd; ++cell) {
2464338f77d5SMatthew G. Knepley     const PetscInt c = cell - cStart;
2465338f77d5SMatthew G. Knepley     PetscInt       dof, off;
2466338f77d5SMatthew G. Knepley 
2467cbf8eb3cSStefano Zampini     if (printFEM > 1) PetscCall(DMPrintCellVector(cell, "Cell Integral", Nf, &cintegral[c * Nf]));
24689566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetDof(sectionF, cell, &dof));
24699566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetOffset(sectionF, cell, &off));
247063a3b9bcSJacob Faibussowitsch     PetscCheck(dof == Nf, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "The number of cell dofs %" PetscInt_FMT " != %" PetscInt_FMT, dof, Nf);
2471338f77d5SMatthew G. Knepley     for (f = 0; f < Nf; ++f) af[off + f] = cintegral[c * Nf + f];
2472338f77d5SMatthew G. Knepley   }
24739566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(F, &af));
24749566063dSJacob Faibussowitsch   PetscCall(PetscFree(cintegral));
24759566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(DMPLEX_IntegralFEM, dm, 0, 0, 0));
2476cbf8eb3cSStefano Zampini   PetscCall(DMDestroy(&dm));
24773ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
247873d901b8SMatthew G. Knepley }
247973d901b8SMatthew G. Knepley 
2480d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexComputeBdIntegral_Internal(DM dm, Vec locX, IS pointIS, void (*func)(PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], PetscReal, const PetscReal[], const PetscReal[], PetscInt, const PetscScalar[], PetscScalar[]), PetscScalar *fintegral, void *user)
2481d71ae5a4SJacob Faibussowitsch {
24829b6f715bSMatthew G. Knepley   DM                 plex = NULL, plexA = NULL;
2483a6e0b375SMatthew G. Knepley   DMEnclosureType    encAux;
24849b6f715bSMatthew G. Knepley   PetscDS            prob, probAux       = NULL;
24859b6f715bSMatthew G. Knepley   PetscSection       section, sectionAux = NULL;
24869b6f715bSMatthew G. Knepley   Vec                locA = NULL;
24879b6f715bSMatthew G. Knepley   DMField            coordField;
24889b6f715bSMatthew G. Knepley   PetscInt           Nf, totDim, *uOff, *uOff_x;
24899b6f715bSMatthew G. Knepley   PetscInt           NfAux = 0, totDimAux = 0, *aOff = NULL;
24909b6f715bSMatthew G. Knepley   PetscScalar       *u, *a = NULL;
249164c72086SMatthew G. Knepley   const PetscScalar *constants;
24929b6f715bSMatthew G. Knepley   PetscInt           numConstants, f;
249364c72086SMatthew G. Knepley 
249464c72086SMatthew G. Knepley   PetscFunctionBegin;
24959566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateField(dm, &coordField));
24969566063dSJacob Faibussowitsch   PetscCall(DMConvert(dm, DMPLEX, &plex));
24979566063dSJacob Faibussowitsch   PetscCall(DMGetDS(dm, &prob));
24989566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dm, &section));
24999566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetNumFields(section, &Nf));
250064c72086SMatthew G. Knepley   /* Determine which discretizations we have */
25019b6f715bSMatthew G. Knepley   for (f = 0; f < Nf; ++f) {
250264c72086SMatthew G. Knepley     PetscObject  obj;
250364c72086SMatthew G. Knepley     PetscClassId id;
250464c72086SMatthew G. Knepley 
25059566063dSJacob Faibussowitsch     PetscCall(PetscDSGetDiscretization(prob, f, &obj));
25069566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetClassId(obj, &id));
250763a3b9bcSJacob Faibussowitsch     PetscCheck(id != PETSCFV_CLASSID, PetscObjectComm((PetscObject)dm), PETSC_ERR_SUP, "Not supported for FVM (field %" PetscInt_FMT ")", f);
250864c72086SMatthew G. Knepley   }
250964c72086SMatthew G. Knepley   /* Read DS information */
25109566063dSJacob Faibussowitsch   PetscCall(PetscDSGetTotalDimension(prob, &totDim));
25119566063dSJacob Faibussowitsch   PetscCall(PetscDSGetComponentOffsets(prob, &uOff));
25129566063dSJacob Faibussowitsch   PetscCall(PetscDSGetComponentDerivativeOffsets(prob, &uOff_x));
25139566063dSJacob Faibussowitsch   PetscCall(PetscDSGetConstants(prob, &numConstants, &constants));
251464c72086SMatthew G. Knepley   /* Read Auxiliary DS information */
25159566063dSJacob Faibussowitsch   PetscCall(DMGetAuxiliaryVec(dm, NULL, 0, 0, &locA));
25169b6f715bSMatthew G. Knepley   if (locA) {
25179b6f715bSMatthew G. Knepley     DM dmAux;
25189b6f715bSMatthew G. Knepley 
25199566063dSJacob Faibussowitsch     PetscCall(VecGetDM(locA, &dmAux));
25209566063dSJacob Faibussowitsch     PetscCall(DMGetEnclosureRelation(dmAux, dm, &encAux));
25219566063dSJacob Faibussowitsch     PetscCall(DMConvert(dmAux, DMPLEX, &plexA));
25229566063dSJacob Faibussowitsch     PetscCall(DMGetDS(dmAux, &probAux));
25239566063dSJacob Faibussowitsch     PetscCall(PetscDSGetNumFields(probAux, &NfAux));
25249566063dSJacob Faibussowitsch     PetscCall(DMGetLocalSection(dmAux, &sectionAux));
25259566063dSJacob Faibussowitsch     PetscCall(PetscDSGetTotalDimension(probAux, &totDimAux));
25269566063dSJacob Faibussowitsch     PetscCall(PetscDSGetComponentOffsets(probAux, &aOff));
252764c72086SMatthew G. Knepley   }
25289b6f715bSMatthew G. Knepley   /* Integrate over points */
25299b6f715bSMatthew G. Knepley   {
25309b6f715bSMatthew G. Knepley     PetscFEGeom    *fgeom, *chunkGeom = NULL;
2531b7260050SToby Isaac     PetscInt        maxDegree;
25329b6f715bSMatthew G. Knepley     PetscQuadrature qGeom = NULL;
25339b6f715bSMatthew G. Knepley     const PetscInt *points;
25349b6f715bSMatthew G. Knepley     PetscInt        numFaces, face, Nq, field;
25359b6f715bSMatthew G. Knepley     PetscInt        numChunks, chunkSize, chunk, Nr, offset;
253664c72086SMatthew G. Knepley 
25379566063dSJacob Faibussowitsch     PetscCall(ISGetLocalSize(pointIS, &numFaces));
25389566063dSJacob Faibussowitsch     PetscCall(ISGetIndices(pointIS, &points));
25399566063dSJacob Faibussowitsch     PetscCall(PetscCalloc2(numFaces * totDim, &u, locA ? numFaces * totDimAux : 0, &a));
25409566063dSJacob Faibussowitsch     PetscCall(DMFieldGetDegree(coordField, pointIS, NULL, &maxDegree));
254164c72086SMatthew G. Knepley     for (field = 0; field < Nf; ++field) {
254264c72086SMatthew G. Knepley       PetscFE fe;
254364c72086SMatthew G. Knepley 
25449566063dSJacob Faibussowitsch       PetscCall(PetscDSGetDiscretization(prob, field, (PetscObject *)&fe));
25459566063dSJacob Faibussowitsch       if (maxDegree <= 1) PetscCall(DMFieldCreateDefaultQuadrature(coordField, pointIS, &qGeom));
25469b6f715bSMatthew G. Knepley       if (!qGeom) {
25479566063dSJacob Faibussowitsch         PetscCall(PetscFEGetFaceQuadrature(fe, &qGeom));
25489566063dSJacob Faibussowitsch         PetscCall(PetscObjectReference((PetscObject)qGeom));
25499b6f715bSMatthew G. Knepley       }
25509566063dSJacob Faibussowitsch       PetscCall(PetscQuadratureGetData(qGeom, NULL, NULL, &Nq, NULL, NULL));
25519566063dSJacob Faibussowitsch       PetscCall(DMPlexGetFEGeom(coordField, pointIS, qGeom, PETSC_TRUE, &fgeom));
25529b6f715bSMatthew G. Knepley       for (face = 0; face < numFaces; ++face) {
2553f15274beSMatthew Knepley         const PetscInt point = points[face], *support;
25549b6f715bSMatthew G. Knepley         PetscScalar   *x     = NULL;
2555f15274beSMatthew Knepley         PetscInt       i;
25569b6f715bSMatthew G. Knepley 
25579566063dSJacob Faibussowitsch         PetscCall(DMPlexGetSupport(dm, point, &support));
25589566063dSJacob Faibussowitsch         PetscCall(DMPlexVecGetClosure(plex, section, locX, support[0], NULL, &x));
25599b6f715bSMatthew G. Knepley         for (i = 0; i < totDim; ++i) u[face * totDim + i] = x[i];
25609566063dSJacob Faibussowitsch         PetscCall(DMPlexVecRestoreClosure(plex, section, locX, support[0], NULL, &x));
25619b6f715bSMatthew G. Knepley         if (locA) {
25629b6f715bSMatthew G. Knepley           PetscInt subp;
25639566063dSJacob Faibussowitsch           PetscCall(DMGetEnclosurePoint(plexA, dm, encAux, support[0], &subp));
25649566063dSJacob Faibussowitsch           PetscCall(DMPlexVecGetClosure(plexA, sectionAux, locA, subp, NULL, &x));
25659b6f715bSMatthew G. Knepley           for (i = 0; i < totDimAux; ++i) a[f * totDimAux + i] = x[i];
25669566063dSJacob Faibussowitsch           PetscCall(DMPlexVecRestoreClosure(plexA, sectionAux, locA, subp, NULL, &x));
25679b6f715bSMatthew G. Knepley         }
25689b6f715bSMatthew G. Knepley       }
25699b6f715bSMatthew G. Knepley       /* Get blocking */
25709b6f715bSMatthew G. Knepley       {
25719b6f715bSMatthew G. Knepley         PetscQuadrature q;
25729b6f715bSMatthew G. Knepley         PetscInt        numBatches, batchSize, numBlocks, blockSize;
25739b6f715bSMatthew G. Knepley         PetscInt        Nq, Nb;
25749b6f715bSMatthew G. Knepley 
25759566063dSJacob Faibussowitsch         PetscCall(PetscFEGetTileSizes(fe, NULL, &numBlocks, NULL, &numBatches));
25769566063dSJacob Faibussowitsch         PetscCall(PetscFEGetQuadrature(fe, &q));
25779566063dSJacob Faibussowitsch         PetscCall(PetscQuadratureGetData(q, NULL, NULL, &Nq, NULL, NULL));
25789566063dSJacob Faibussowitsch         PetscCall(PetscFEGetDimension(fe, &Nb));
257964c72086SMatthew G. Knepley         blockSize = Nb * Nq;
258064c72086SMatthew G. Knepley         batchSize = numBlocks * blockSize;
25819b6f715bSMatthew G. Knepley         chunkSize = numBatches * batchSize;
25829566063dSJacob Faibussowitsch         PetscCall(PetscFESetTileSizes(fe, blockSize, numBlocks, batchSize, numBatches));
25839b6f715bSMatthew G. Knepley         numChunks = numFaces / chunkSize;
25849b6f715bSMatthew G. Knepley         Nr        = numFaces % chunkSize;
258564c72086SMatthew G. Knepley         offset    = numFaces - Nr;
258664c72086SMatthew G. Knepley       }
25879b6f715bSMatthew G. Knepley       /* Do integration for each field */
25889b6f715bSMatthew G. Knepley       for (chunk = 0; chunk < numChunks; ++chunk) {
25899566063dSJacob Faibussowitsch         PetscCall(PetscFEGeomGetChunk(fgeom, chunk * chunkSize, (chunk + 1) * chunkSize, &chunkGeom));
25909566063dSJacob Faibussowitsch         PetscCall(PetscFEIntegrateBd(prob, field, func, chunkSize, chunkGeom, u, probAux, a, fintegral));
25919566063dSJacob Faibussowitsch         PetscCall(PetscFEGeomRestoreChunk(fgeom, 0, offset, &chunkGeom));
259264c72086SMatthew G. Knepley       }
25939566063dSJacob Faibussowitsch       PetscCall(PetscFEGeomGetChunk(fgeom, offset, numFaces, &chunkGeom));
25948e3a54c0SPierre Jolivet       PetscCall(PetscFEIntegrateBd(prob, field, func, Nr, chunkGeom, &u[offset * totDim], probAux, PetscSafePointerPlusOffset(a, offset * totDimAux), &fintegral[offset * Nf]));
25959566063dSJacob Faibussowitsch       PetscCall(PetscFEGeomRestoreChunk(fgeom, offset, numFaces, &chunkGeom));
259664c72086SMatthew G. Knepley       /* Cleanup data arrays */
25979566063dSJacob Faibussowitsch       PetscCall(DMPlexRestoreFEGeom(coordField, pointIS, qGeom, PETSC_TRUE, &fgeom));
25989566063dSJacob Faibussowitsch       PetscCall(PetscQuadratureDestroy(&qGeom));
25999566063dSJacob Faibussowitsch       PetscCall(PetscFree2(u, a));
26009566063dSJacob Faibussowitsch       PetscCall(ISRestoreIndices(pointIS, &points));
260164c72086SMatthew G. Knepley     }
260264c72086SMatthew G. Knepley   }
26039566063dSJacob Faibussowitsch   if (plex) PetscCall(DMDestroy(&plex));
26049566063dSJacob Faibussowitsch   if (plexA) PetscCall(DMDestroy(&plexA));
26053ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
26069b6f715bSMatthew G. Knepley }
26079b6f715bSMatthew G. Knepley 
260860225df5SJacob Faibussowitsch /*@C
26099b6f715bSMatthew G. Knepley   DMPlexComputeBdIntegral - Form the integral over the specified boundary from the global input X using pointwise functions specified by the user
26109b6f715bSMatthew G. Knepley 
26119b6f715bSMatthew G. Knepley   Input Parameters:
26129b6f715bSMatthew G. Knepley + dm      - The mesh
26139b6f715bSMatthew G. Knepley . X       - Global input vector
2614a1cb98faSBarry Smith . label   - The boundary `DMLabel`
2615a1cb98faSBarry Smith . numVals - The number of label values to use, or `PETSC_DETERMINE` for all values
2616a1cb98faSBarry Smith . vals    - The label values to use, or NULL for all values
261767b8a455SSatish Balay . func    - The function to integrate along the boundary
26189b6f715bSMatthew G. Knepley - user    - The user context
26199b6f715bSMatthew G. Knepley 
26209b6f715bSMatthew G. Knepley   Output Parameter:
26219b6f715bSMatthew G. Knepley . integral - Integral for each field
26229b6f715bSMatthew G. Knepley 
26239b6f715bSMatthew G. Knepley   Level: developer
26249b6f715bSMatthew G. Knepley 
26251cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexComputeIntegralFEM()`, `DMPlexComputeBdResidualFEM()`
26269b6f715bSMatthew G. Knepley @*/
2627d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeBdIntegral(DM dm, Vec X, DMLabel label, PetscInt numVals, const PetscInt vals[], void (*func)(PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], PetscReal, const PetscReal[], const PetscReal[], PetscInt, const PetscScalar[], PetscScalar[]), PetscScalar *integral, void *user)
2628d71ae5a4SJacob Faibussowitsch {
26299b6f715bSMatthew G. Knepley   Vec          locX;
26309b6f715bSMatthew G. Knepley   PetscSection section;
26319b6f715bSMatthew G. Knepley   DMLabel      depthLabel;
26329b6f715bSMatthew G. Knepley   IS           facetIS;
26339b6f715bSMatthew G. Knepley   PetscInt     dim, Nf, f, v;
26349b6f715bSMatthew G. Knepley 
26359b6f715bSMatthew G. Knepley   PetscFunctionBegin;
26369b6f715bSMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
26379b6f715bSMatthew G. Knepley   PetscValidHeaderSpecific(X, VEC_CLASSID, 2);
2638292bffcbSToby Isaac   PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 3);
26394f572ea9SToby Isaac   if (vals) PetscAssertPointer(vals, 5);
26404f572ea9SToby Isaac   PetscAssertPointer(integral, 7);
26419566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(DMPLEX_IntegralFEM, dm, 0, 0, 0));
26429566063dSJacob Faibussowitsch   PetscCall(DMPlexGetDepthLabel(dm, &depthLabel));
26439566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dm, &dim));
26449566063dSJacob Faibussowitsch   PetscCall(DMLabelGetStratumIS(depthLabel, dim - 1, &facetIS));
26459566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dm, &section));
26469566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetNumFields(section, &Nf));
26479b6f715bSMatthew G. Knepley   /* Get local solution with boundary values */
26489566063dSJacob Faibussowitsch   PetscCall(DMGetLocalVector(dm, &locX));
26499566063dSJacob Faibussowitsch   PetscCall(DMPlexInsertBoundaryValues(dm, PETSC_TRUE, locX, 0.0, NULL, NULL, NULL));
26509566063dSJacob Faibussowitsch   PetscCall(DMGlobalToLocalBegin(dm, X, INSERT_VALUES, locX));
26519566063dSJacob Faibussowitsch   PetscCall(DMGlobalToLocalEnd(dm, X, INSERT_VALUES, locX));
26529b6f715bSMatthew G. Knepley   /* Loop over label values */
26539566063dSJacob Faibussowitsch   PetscCall(PetscArrayzero(integral, Nf));
26549b6f715bSMatthew G. Knepley   for (v = 0; v < numVals; ++v) {
26559b6f715bSMatthew G. Knepley     IS           pointIS;
26569b6f715bSMatthew G. Knepley     PetscInt     numFaces, face;
26579b6f715bSMatthew G. Knepley     PetscScalar *fintegral;
26589b6f715bSMatthew G. Knepley 
26599566063dSJacob Faibussowitsch     PetscCall(DMLabelGetStratumIS(label, vals[v], &pointIS));
26609b6f715bSMatthew G. Knepley     if (!pointIS) continue; /* No points with that id on this process */
26619b6f715bSMatthew G. Knepley     {
26629b6f715bSMatthew G. Knepley       IS isectIS;
26639b6f715bSMatthew G. Knepley 
26649b6f715bSMatthew G. Knepley       /* TODO: Special cases of ISIntersect where it is quick to check a priori if one is a superset of the other */
26659566063dSJacob Faibussowitsch       PetscCall(ISIntersect_Caching_Internal(facetIS, pointIS, &isectIS));
26669566063dSJacob Faibussowitsch       PetscCall(ISDestroy(&pointIS));
26679b6f715bSMatthew G. Knepley       pointIS = isectIS;
26689b6f715bSMatthew G. Knepley     }
26699566063dSJacob Faibussowitsch     PetscCall(ISGetLocalSize(pointIS, &numFaces));
26709566063dSJacob Faibussowitsch     PetscCall(PetscCalloc1(numFaces * Nf, &fintegral));
26719566063dSJacob Faibussowitsch     PetscCall(DMPlexComputeBdIntegral_Internal(dm, locX, pointIS, func, fintegral, user));
26729b6f715bSMatthew G. Knepley     /* Sum point contributions into integral */
26739371c9d4SSatish Balay     for (f = 0; f < Nf; ++f)
26749371c9d4SSatish Balay       for (face = 0; face < numFaces; ++face) integral[f] += fintegral[face * Nf + f];
26759566063dSJacob Faibussowitsch     PetscCall(PetscFree(fintegral));
26769566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&pointIS));
26779b6f715bSMatthew G. Knepley   }
26789566063dSJacob Faibussowitsch   PetscCall(DMRestoreLocalVector(dm, &locX));
26799566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&facetIS));
26809566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(DMPLEX_IntegralFEM, dm, 0, 0, 0));
26813ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
268264c72086SMatthew G. Knepley }
268364c72086SMatthew G. Knepley 
2684d69c5d34SMatthew G. Knepley /*@
2685*0318f8a0SStefano Zampini   DMPlexComputeInterpolatorNested - Form the local portion of the interpolation matrix from the coarse `DM` to a uniformly refined `DM`.
2686d69c5d34SMatthew G. Knepley 
2687d69c5d34SMatthew G. Knepley   Input Parameters:
2688cf51de39SMatthew G. Knepley + dmc       - The coarse mesh
2689cf51de39SMatthew G. Knepley . dmf       - The fine mesh
2690cf51de39SMatthew G. Knepley . isRefined - Flag indicating regular refinement, rather than the same topology
2691d69c5d34SMatthew G. Knepley - user      - The user context
2692d69c5d34SMatthew G. Knepley 
2693d69c5d34SMatthew G. Knepley   Output Parameter:
2694934789fcSMatthew G. Knepley . In - The interpolation matrix
2695d69c5d34SMatthew G. Knepley 
2696d69c5d34SMatthew G. Knepley   Level: developer
2697d69c5d34SMatthew G. Knepley 
26981cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexComputeInterpolatorGeneral()`, `DMPlexComputeJacobianFEM()`
2699d69c5d34SMatthew G. Knepley @*/
2700d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeInterpolatorNested(DM dmc, DM dmf, PetscBool isRefined, Mat In, void *user)
2701d71ae5a4SJacob Faibussowitsch {
2702d69c5d34SMatthew G. Knepley   DM_Plex     *mesh = (DM_Plex *)dmc->data;
2703d69c5d34SMatthew G. Knepley   const char  *name = "Interpolator";
2704d69c5d34SMatthew G. Knepley   PetscFE     *feRef;
270597c42addSMatthew G. Knepley   PetscFV     *fvRef;
2706d69c5d34SMatthew G. Knepley   PetscSection fsection, fglobalSection;
2707d69c5d34SMatthew G. Knepley   PetscSection csection, cglobalSection;
2708d69c5d34SMatthew G. Knepley   PetscScalar *elemMat;
2709485ad865SMatthew G. Knepley   PetscInt     dim, Nf, f, fieldI, fieldJ, offsetI, offsetJ, cStart, cEnd, c;
27102ea9c922SToby Isaac   PetscInt     cTotDim = 0, rTotDim = 0;
2711d69c5d34SMatthew G. Knepley 
2712d69c5d34SMatthew G. Knepley   PetscFunctionBegin;
27139566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(DMPLEX_InterpolatorFEM, dmc, dmf, 0, 0));
27149566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dmf, &dim));
27159566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dmf, &fsection));
27169566063dSJacob Faibussowitsch   PetscCall(DMGetGlobalSection(dmf, &fglobalSection));
27179566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dmc, &csection));
27189566063dSJacob Faibussowitsch   PetscCall(DMGetGlobalSection(dmc, &cglobalSection));
27199566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetNumFields(fsection, &Nf));
27209566063dSJacob Faibussowitsch   PetscCall(DMPlexGetSimplexOrBoxCells(dmc, 0, &cStart, &cEnd));
27219566063dSJacob Faibussowitsch   PetscCall(PetscCalloc2(Nf, &feRef, Nf, &fvRef));
2722d69c5d34SMatthew G. Knepley   for (f = 0; f < Nf; ++f) {
27232ea9c922SToby Isaac     PetscObject  obj, objc;
27242ea9c922SToby Isaac     PetscClassId id, idc;
27252ea9c922SToby Isaac     PetscInt     rNb = 0, Nc = 0, cNb = 0;
2726d69c5d34SMatthew G. Knepley 
27279566063dSJacob Faibussowitsch     PetscCall(DMGetField(dmf, f, NULL, &obj));
27289566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetClassId(obj, &id));
272997c42addSMatthew G. Knepley     if (id == PETSCFE_CLASSID) {
273097c42addSMatthew G. Knepley       PetscFE fe = (PetscFE)obj;
273197c42addSMatthew G. Knepley 
2732cf51de39SMatthew G. Knepley       if (isRefined) {
27339566063dSJacob Faibussowitsch         PetscCall(PetscFERefine(fe, &feRef[f]));
2734cf51de39SMatthew G. Knepley       } else {
27359566063dSJacob Faibussowitsch         PetscCall(PetscObjectReference((PetscObject)fe));
2736cf51de39SMatthew G. Knepley         feRef[f] = fe;
2737cf51de39SMatthew G. Knepley       }
27389566063dSJacob Faibussowitsch       PetscCall(PetscFEGetDimension(feRef[f], &rNb));
27399566063dSJacob Faibussowitsch       PetscCall(PetscFEGetNumComponents(fe, &Nc));
274097c42addSMatthew G. Knepley     } else if (id == PETSCFV_CLASSID) {
274197c42addSMatthew G. Knepley       PetscFV        fv = (PetscFV)obj;
274297c42addSMatthew G. Knepley       PetscDualSpace Q;
274397c42addSMatthew G. Knepley 
2744cf51de39SMatthew G. Knepley       if (isRefined) {
27459566063dSJacob Faibussowitsch         PetscCall(PetscFVRefine(fv, &fvRef[f]));
2746cf51de39SMatthew G. Knepley       } else {
27479566063dSJacob Faibussowitsch         PetscCall(PetscObjectReference((PetscObject)fv));
2748cf51de39SMatthew G. Knepley         fvRef[f] = fv;
2749cf51de39SMatthew G. Knepley       }
27509566063dSJacob Faibussowitsch       PetscCall(PetscFVGetDualSpace(fvRef[f], &Q));
27519566063dSJacob Faibussowitsch       PetscCall(PetscDualSpaceGetDimension(Q, &rNb));
27529566063dSJacob Faibussowitsch       PetscCall(PetscFVGetDualSpace(fv, &Q));
27539566063dSJacob Faibussowitsch       PetscCall(PetscFVGetNumComponents(fv, &Nc));
275497c42addSMatthew G. Knepley     }
27559566063dSJacob Faibussowitsch     PetscCall(DMGetField(dmc, f, NULL, &objc));
27569566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetClassId(objc, &idc));
27572ea9c922SToby Isaac     if (idc == PETSCFE_CLASSID) {
27582ea9c922SToby Isaac       PetscFE fe = (PetscFE)objc;
27592ea9c922SToby Isaac 
27609566063dSJacob Faibussowitsch       PetscCall(PetscFEGetDimension(fe, &cNb));
27612ea9c922SToby Isaac     } else if (id == PETSCFV_CLASSID) {
27622ea9c922SToby Isaac       PetscFV        fv = (PetscFV)obj;
27632ea9c922SToby Isaac       PetscDualSpace Q;
27642ea9c922SToby Isaac 
27659566063dSJacob Faibussowitsch       PetscCall(PetscFVGetDualSpace(fv, &Q));
27669566063dSJacob Faibussowitsch       PetscCall(PetscDualSpaceGetDimension(Q, &cNb));
2767d69c5d34SMatthew G. Knepley     }
27682ea9c922SToby Isaac     rTotDim += rNb;
27692ea9c922SToby Isaac     cTotDim += cNb;
27702ea9c922SToby Isaac   }
27719566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(rTotDim * cTotDim, &elemMat));
27729566063dSJacob Faibussowitsch   PetscCall(PetscArrayzero(elemMat, rTotDim * cTotDim));
2773d69c5d34SMatthew G. Knepley   for (fieldI = 0, offsetI = 0; fieldI < Nf; ++fieldI) {
2774d69c5d34SMatthew G. Knepley     PetscDualSpace   Qref;
2775d69c5d34SMatthew G. Knepley     PetscQuadrature  f;
2776d69c5d34SMatthew G. Knepley     const PetscReal *qpoints, *qweights;
2777d69c5d34SMatthew G. Knepley     PetscReal       *points;
2778d69c5d34SMatthew G. Knepley     PetscInt         npoints = 0, Nc, Np, fpdim, i, k, p, d;
2779d69c5d34SMatthew G. Knepley 
2780d69c5d34SMatthew G. Knepley     /* Compose points from all dual basis functionals */
278197c42addSMatthew G. Knepley     if (feRef[fieldI]) {
27829566063dSJacob Faibussowitsch       PetscCall(PetscFEGetDualSpace(feRef[fieldI], &Qref));
27839566063dSJacob Faibussowitsch       PetscCall(PetscFEGetNumComponents(feRef[fieldI], &Nc));
278497c42addSMatthew G. Knepley     } else {
27859566063dSJacob Faibussowitsch       PetscCall(PetscFVGetDualSpace(fvRef[fieldI], &Qref));
27869566063dSJacob Faibussowitsch       PetscCall(PetscFVGetNumComponents(fvRef[fieldI], &Nc));
278797c42addSMatthew G. Knepley     }
27889566063dSJacob Faibussowitsch     PetscCall(PetscDualSpaceGetDimension(Qref, &fpdim));
2789d69c5d34SMatthew G. Knepley     for (i = 0; i < fpdim; ++i) {
27909566063dSJacob Faibussowitsch       PetscCall(PetscDualSpaceGetFunctional(Qref, i, &f));
27919566063dSJacob Faibussowitsch       PetscCall(PetscQuadratureGetData(f, NULL, NULL, &Np, NULL, NULL));
2792d69c5d34SMatthew G. Knepley       npoints += Np;
2793d69c5d34SMatthew G. Knepley     }
27949566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(npoints * dim, &points));
2795d69c5d34SMatthew G. Knepley     for (i = 0, k = 0; i < fpdim; ++i) {
27969566063dSJacob Faibussowitsch       PetscCall(PetscDualSpaceGetFunctional(Qref, i, &f));
27979566063dSJacob Faibussowitsch       PetscCall(PetscQuadratureGetData(f, NULL, NULL, &Np, &qpoints, NULL));
27989371c9d4SSatish Balay       for (p = 0; p < Np; ++p, ++k)
27999371c9d4SSatish Balay         for (d = 0; d < dim; ++d) points[k * dim + d] = qpoints[p * dim + d];
2800d69c5d34SMatthew G. Knepley     }
2801d69c5d34SMatthew G. Knepley 
2802d69c5d34SMatthew G. Knepley     for (fieldJ = 0, offsetJ = 0; fieldJ < Nf; ++fieldJ) {
280397c42addSMatthew G. Knepley       PetscObject  obj;
280497c42addSMatthew G. Knepley       PetscClassId id;
28059c3cf19fSMatthew G. Knepley       PetscInt     NcJ = 0, cpdim = 0, j, qNc;
2806d69c5d34SMatthew G. Knepley 
28079566063dSJacob Faibussowitsch       PetscCall(DMGetField(dmc, fieldJ, NULL, &obj));
28089566063dSJacob Faibussowitsch       PetscCall(PetscObjectGetClassId(obj, &id));
280997c42addSMatthew G. Knepley       if (id == PETSCFE_CLASSID) {
281097c42addSMatthew G. Knepley         PetscFE         fe = (PetscFE)obj;
2811ef0bb6c7SMatthew G. Knepley         PetscTabulation T  = NULL;
2812d69c5d34SMatthew G. Knepley 
2813d69c5d34SMatthew G. Knepley         /* Evaluate basis at points */
28149566063dSJacob Faibussowitsch         PetscCall(PetscFEGetNumComponents(fe, &NcJ));
28159566063dSJacob Faibussowitsch         PetscCall(PetscFEGetDimension(fe, &cpdim));
2816ffe73a53SMatthew G. Knepley         /* For now, fields only interpolate themselves */
2817ffe73a53SMatthew G. Knepley         if (fieldI == fieldJ) {
281863a3b9bcSJacob Faibussowitsch           PetscCheck(Nc == NcJ, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of components in fine space field %" PetscInt_FMT " does not match coarse field %" PetscInt_FMT, Nc, NcJ);
28199566063dSJacob Faibussowitsch           PetscCall(PetscFECreateTabulation(fe, 1, npoints, points, 0, &T));
2820d69c5d34SMatthew G. Knepley           for (i = 0, k = 0; i < fpdim; ++i) {
28219566063dSJacob Faibussowitsch             PetscCall(PetscDualSpaceGetFunctional(Qref, i, &f));
28229566063dSJacob Faibussowitsch             PetscCall(PetscQuadratureGetData(f, NULL, &qNc, &Np, NULL, &qweights));
282363a3b9bcSJacob Faibussowitsch             PetscCheck(qNc == NcJ, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of components in quadrature %" PetscInt_FMT " does not match coarse field %" PetscInt_FMT, qNc, NcJ);
2824d69c5d34SMatthew G. Knepley             for (p = 0; p < Np; ++p, ++k) {
282536a6d9c0SMatthew G. Knepley               for (j = 0; j < cpdim; ++j) {
2826d172c84bSMatthew G. Knepley                 /*
2827d172c84bSMatthew G. Knepley                    cTotDim:            Total columns in element interpolation matrix, sum of number of dual basis functionals in each field
2828d172c84bSMatthew G. Knepley                    offsetI, offsetJ:   Offsets into the larger element interpolation matrix for different fields
2829d172c84bSMatthew G. Knepley                    fpdim, i, cpdim, j: Dofs for fine and coarse grids, correspond to dual space basis functionals
2830d172c84bSMatthew G. Knepley                    qNC, Nc, Ncj, c:    Number of components in this field
2831d172c84bSMatthew G. Knepley                    Np, p:              Number of quad points in the fine grid functional i
2832d172c84bSMatthew G. Knepley                    k:                  i*Np + p, overall point number for the interpolation
2833d172c84bSMatthew G. Knepley                 */
2834ef0bb6c7SMatthew G. Knepley                 for (c = 0; c < Nc; ++c) elemMat[(offsetI + i) * cTotDim + offsetJ + j] += T->T[0][k * cpdim * NcJ + j * Nc + c] * qweights[p * qNc + c];
283536a6d9c0SMatthew G. Knepley               }
2836d69c5d34SMatthew G. Knepley             }
2837d69c5d34SMatthew G. Knepley           }
28389566063dSJacob Faibussowitsch           PetscCall(PetscTabulationDestroy(&T));
2839ffe73a53SMatthew G. Knepley         }
284097c42addSMatthew G. Knepley       } else if (id == PETSCFV_CLASSID) {
284197c42addSMatthew G. Knepley         PetscFV fv = (PetscFV)obj;
284297c42addSMatthew G. Knepley 
284397c42addSMatthew G. Knepley         /* Evaluate constant function at points */
28449566063dSJacob Faibussowitsch         PetscCall(PetscFVGetNumComponents(fv, &NcJ));
284597c42addSMatthew G. Knepley         cpdim = 1;
284697c42addSMatthew G. Knepley         /* For now, fields only interpolate themselves */
284797c42addSMatthew G. Knepley         if (fieldI == fieldJ) {
284863a3b9bcSJacob Faibussowitsch           PetscCheck(Nc == NcJ, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of components in fine space field %" PetscInt_FMT " does not match coarse field %" PetscInt_FMT, Nc, NcJ);
284997c42addSMatthew G. Knepley           for (i = 0, k = 0; i < fpdim; ++i) {
28509566063dSJacob Faibussowitsch             PetscCall(PetscDualSpaceGetFunctional(Qref, i, &f));
28519566063dSJacob Faibussowitsch             PetscCall(PetscQuadratureGetData(f, NULL, &qNc, &Np, NULL, &qweights));
285263a3b9bcSJacob Faibussowitsch             PetscCheck(qNc == NcJ, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of components in quadrature %" PetscInt_FMT " does not match coarse field %" PetscInt_FMT, qNc, NcJ);
285397c42addSMatthew G. Knepley             for (p = 0; p < Np; ++p, ++k) {
285497c42addSMatthew G. Knepley               for (j = 0; j < cpdim; ++j) {
2855458eb97cSMatthew G. Knepley                 for (c = 0; c < Nc; ++c) elemMat[(offsetI + i) * cTotDim + offsetJ + j] += 1.0 * qweights[p * qNc + c];
285697c42addSMatthew G. Knepley               }
285797c42addSMatthew G. Knepley             }
285897c42addSMatthew G. Knepley           }
285997c42addSMatthew G. Knepley         }
286097c42addSMatthew G. Knepley       }
2861d172c84bSMatthew G. Knepley       offsetJ += cpdim;
2862d69c5d34SMatthew G. Knepley     }
2863d172c84bSMatthew G. Knepley     offsetI += fpdim;
28649566063dSJacob Faibussowitsch     PetscCall(PetscFree(points));
2865d69c5d34SMatthew G. Knepley   }
28669566063dSJacob Faibussowitsch   if (mesh->printFEM > 1) PetscCall(DMPrintCellMatrix(0, name, rTotDim, cTotDim, elemMat));
28677f5b169aSMatthew G. Knepley   /* Preallocate matrix */
28687f5b169aSMatthew G. Knepley   {
2869c094ef40SMatthew G. Knepley     Mat          preallocator;
2870c094ef40SMatthew G. Knepley     PetscScalar *vals;
2871c094ef40SMatthew G. Knepley     PetscInt    *cellCIndices, *cellFIndices;
2872c094ef40SMatthew G. Knepley     PetscInt     locRows, locCols, cell;
28737f5b169aSMatthew G. Knepley 
28749566063dSJacob Faibussowitsch     PetscCall(MatGetLocalSize(In, &locRows, &locCols));
28759566063dSJacob Faibussowitsch     PetscCall(MatCreate(PetscObjectComm((PetscObject)In), &preallocator));
28769566063dSJacob Faibussowitsch     PetscCall(MatSetType(preallocator, MATPREALLOCATOR));
28779566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(preallocator, locRows, locCols, PETSC_DETERMINE, PETSC_DETERMINE));
28789566063dSJacob Faibussowitsch     PetscCall(MatSetUp(preallocator));
28799566063dSJacob Faibussowitsch     PetscCall(PetscCalloc3(rTotDim * cTotDim, &vals, cTotDim, &cellCIndices, rTotDim, &cellFIndices));
28807f5b169aSMatthew G. Knepley     for (cell = cStart; cell < cEnd; ++cell) {
2881cf51de39SMatthew G. Knepley       if (isRefined) {
28829566063dSJacob Faibussowitsch         PetscCall(DMPlexMatGetClosureIndicesRefined(dmf, fsection, fglobalSection, dmc, csection, cglobalSection, cell, cellCIndices, cellFIndices));
28839566063dSJacob Faibussowitsch         PetscCall(MatSetValues(preallocator, rTotDim, cellFIndices, cTotDim, cellCIndices, vals, INSERT_VALUES));
2884cf51de39SMatthew G. Knepley       } else {
2885e8e188d2SZach Atkins         PetscCall(DMPlexMatSetClosureGeneral(dmf, fsection, fglobalSection, PETSC_FALSE, dmc, csection, cglobalSection, PETSC_FALSE, preallocator, cell, vals, INSERT_VALUES));
2886cf51de39SMatthew G. Knepley       }
28877f5b169aSMatthew G. Knepley     }
28889566063dSJacob Faibussowitsch     PetscCall(PetscFree3(vals, cellCIndices, cellFIndices));
28899566063dSJacob Faibussowitsch     PetscCall(MatAssemblyBegin(preallocator, MAT_FINAL_ASSEMBLY));
28909566063dSJacob Faibussowitsch     PetscCall(MatAssemblyEnd(preallocator, MAT_FINAL_ASSEMBLY));
28919566063dSJacob Faibussowitsch     PetscCall(MatPreallocatorPreallocate(preallocator, PETSC_TRUE, In));
28929566063dSJacob Faibussowitsch     PetscCall(MatDestroy(&preallocator));
28937f5b169aSMatthew G. Knepley   }
28947f5b169aSMatthew G. Knepley   /* Fill matrix */
28959566063dSJacob Faibussowitsch   PetscCall(MatZeroEntries(In));
2896d69c5d34SMatthew G. Knepley   for (c = cStart; c < cEnd; ++c) {
2897cf51de39SMatthew G. Knepley     if (isRefined) {
28989566063dSJacob Faibussowitsch       PetscCall(DMPlexMatSetClosureRefined(dmf, fsection, fglobalSection, dmc, csection, cglobalSection, In, c, elemMat, INSERT_VALUES));
2899cf51de39SMatthew G. Knepley     } else {
2900e8e188d2SZach Atkins       PetscCall(DMPlexMatSetClosureGeneral(dmf, fsection, fglobalSection, PETSC_FALSE, dmc, csection, cglobalSection, PETSC_FALSE, In, c, elemMat, INSERT_VALUES));
2901cf51de39SMatthew G. Knepley     }
2902d69c5d34SMatthew G. Knepley   }
29039566063dSJacob Faibussowitsch   for (f = 0; f < Nf; ++f) PetscCall(PetscFEDestroy(&feRef[f]));
29049566063dSJacob Faibussowitsch   PetscCall(PetscFree2(feRef, fvRef));
29059566063dSJacob Faibussowitsch   PetscCall(PetscFree(elemMat));
29069566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(In, MAT_FINAL_ASSEMBLY));
29079566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(In, MAT_FINAL_ASSEMBLY));
29089318fe57SMatthew G. Knepley   if (mesh->printFEM > 1) {
29099566063dSJacob Faibussowitsch     PetscCall(PetscPrintf(PetscObjectComm((PetscObject)In), "%s:\n", name));
29102ce66baaSPierre Jolivet     PetscCall(MatFilter(In, 1.0e-10, PETSC_FALSE, PETSC_FALSE));
29119566063dSJacob Faibussowitsch     PetscCall(MatView(In, NULL));
2912d69c5d34SMatthew G. Knepley   }
29139566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(DMPLEX_InterpolatorFEM, dmc, dmf, 0, 0));
29143ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2915d69c5d34SMatthew G. Knepley }
29166c73c22cSMatthew G. Knepley 
2917d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeMassMatrixNested(DM dmc, DM dmf, Mat mass, void *user)
2918d71ae5a4SJacob Faibussowitsch {
2919bd041c0cSMatthew G. Knepley   SETERRQ(PetscObjectComm((PetscObject)dmc), PETSC_ERR_SUP, "Laziness");
2920bd041c0cSMatthew G. Knepley }
2921bd041c0cSMatthew G. Knepley 
292268132eb9SMatthew G. Knepley /*@
2923*0318f8a0SStefano Zampini   DMPlexComputeInterpolatorGeneral - Form the local portion of the interpolation matrix from the coarse `DM` to a non-nested fine `DM`.
292468132eb9SMatthew G. Knepley 
292568132eb9SMatthew G. Knepley   Input Parameters:
292668132eb9SMatthew G. Knepley + dmf  - The fine mesh
292768132eb9SMatthew G. Knepley . dmc  - The coarse mesh
292868132eb9SMatthew G. Knepley - user - The user context
292968132eb9SMatthew G. Knepley 
293068132eb9SMatthew G. Knepley   Output Parameter:
293168132eb9SMatthew G. Knepley . In - The interpolation matrix
293268132eb9SMatthew G. Knepley 
293368132eb9SMatthew G. Knepley   Level: developer
293468132eb9SMatthew G. Knepley 
29351cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexComputeInterpolatorNested()`, `DMPlexComputeJacobianFEM()`
293668132eb9SMatthew G. Knepley @*/
2937d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeInterpolatorGeneral(DM dmc, DM dmf, Mat In, void *user)
2938d71ae5a4SJacob Faibussowitsch {
293964e98e1dSMatthew G. Knepley   DM_Plex     *mesh = (DM_Plex *)dmf->data;
294064e98e1dSMatthew G. Knepley   const char  *name = "Interpolator";
29414ef9d792SMatthew G. Knepley   PetscDS      prob;
2942a0806964SMatthew G. Knepley   Mat          interp;
2943a0806964SMatthew G. Knepley   PetscSection fsection, globalFSection;
2944a0806964SMatthew G. Knepley   PetscSection csection, globalCSection;
2945a0806964SMatthew G. Knepley   PetscInt     locRows, locCols;
29464ef9d792SMatthew G. Knepley   PetscReal   *x, *v0, *J, *invJ, detJ;
29474ef9d792SMatthew G. Knepley   PetscReal   *v0c, *Jc, *invJc, detJc;
29484ef9d792SMatthew G. Knepley   PetscScalar *elemMat;
2949a0806964SMatthew G. Knepley   PetscInt     dim, Nf, field, totDim, cStart, cEnd, cell, ccell, s;
29504ef9d792SMatthew G. Knepley 
29514ef9d792SMatthew G. Knepley   PetscFunctionBegin;
29529566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(DMPLEX_InterpolatorFEM, dmc, dmf, 0, 0));
29539566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateDim(dmc, &dim));
29549566063dSJacob Faibussowitsch   PetscCall(DMGetDS(dmc, &prob));
29559566063dSJacob Faibussowitsch   PetscCall(PetscDSGetWorkspace(prob, &x, NULL, NULL, NULL, NULL));
29569566063dSJacob Faibussowitsch   PetscCall(PetscDSGetNumFields(prob, &Nf));
29579566063dSJacob Faibussowitsch   PetscCall(PetscMalloc3(dim, &v0, dim * dim, &J, dim * dim, &invJ));
29589566063dSJacob Faibussowitsch   PetscCall(PetscMalloc3(dim, &v0c, dim * dim, &Jc, dim * dim, &invJc));
29599566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dmf, &fsection));
29609566063dSJacob Faibussowitsch   PetscCall(DMGetGlobalSection(dmf, &globalFSection));
29619566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dmc, &csection));
29629566063dSJacob Faibussowitsch   PetscCall(DMGetGlobalSection(dmc, &globalCSection));
2963a0806964SMatthew G. Knepley   PetscCall(DMPlexGetSimplexOrBoxCells(dmf, 0, &cStart, &cEnd));
29649566063dSJacob Faibussowitsch   PetscCall(PetscDSGetTotalDimension(prob, &totDim));
29659566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(totDim, &elemMat));
29664ef9d792SMatthew G. Knepley 
2967a0806964SMatthew G. Knepley   PetscCall(MatGetLocalSize(In, &locRows, &locCols));
2968a0806964SMatthew G. Knepley   PetscCall(MatCreate(PetscObjectComm((PetscObject)In), &interp));
2969a0806964SMatthew G. Knepley   PetscCall(MatSetType(interp, MATPREALLOCATOR));
2970a0806964SMatthew G. Knepley   PetscCall(MatSetSizes(interp, locRows, locCols, PETSC_DETERMINE, PETSC_DETERMINE));
2971a0806964SMatthew G. Knepley   PetscCall(MatSetUp(interp));
2972a0806964SMatthew G. Knepley   for (s = 0; s < 2; ++s) {
29734ef9d792SMatthew G. Knepley     for (field = 0; field < Nf; ++field) {
29744ef9d792SMatthew G. Knepley       PetscObject      obj;
29754ef9d792SMatthew G. Knepley       PetscClassId     id;
2976c0d7054bSMatthew G. Knepley       PetscDualSpace   Q = NULL;
2977ef0bb6c7SMatthew G. Knepley       PetscTabulation  T = NULL;
29784ef9d792SMatthew G. Knepley       PetscQuadrature  f;
29794ef9d792SMatthew G. Knepley       const PetscReal *qpoints, *qweights;
2980d0f6233fSMatthew G. Knepley       PetscInt         Nc, qNc, Np, fpdim, off, i, d;
29814ef9d792SMatthew G. Knepley 
2982d0f6233fSMatthew G. Knepley       PetscCall(PetscDSGetFieldOffset(prob, field, &off));
29839566063dSJacob Faibussowitsch       PetscCall(PetscDSGetDiscretization(prob, field, &obj));
29849566063dSJacob Faibussowitsch       PetscCall(PetscObjectGetClassId(obj, &id));
29854ef9d792SMatthew G. Knepley       if (id == PETSCFE_CLASSID) {
29864ef9d792SMatthew G. Knepley         PetscFE fe = (PetscFE)obj;
29874ef9d792SMatthew G. Knepley 
29889566063dSJacob Faibussowitsch         PetscCall(PetscFEGetDualSpace(fe, &Q));
29899566063dSJacob Faibussowitsch         PetscCall(PetscFEGetNumComponents(fe, &Nc));
2990a0806964SMatthew G. Knepley         if (s) PetscCall(PetscFECreateTabulation(fe, 1, 1, x, 0, &T));
29914ef9d792SMatthew G. Knepley       } else if (id == PETSCFV_CLASSID) {
29924ef9d792SMatthew G. Knepley         PetscFV fv = (PetscFV)obj;
29934ef9d792SMatthew G. Knepley 
29949566063dSJacob Faibussowitsch         PetscCall(PetscFVGetDualSpace(fv, &Q));
29954ef9d792SMatthew G. Knepley         Nc = 1;
299663a3b9bcSJacob Faibussowitsch       } else SETERRQ(PetscObjectComm((PetscObject)dmc), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, field);
29979566063dSJacob Faibussowitsch       PetscCall(PetscDualSpaceGetDimension(Q, &fpdim));
29984ef9d792SMatthew G. Knepley       /* For each fine grid cell */
29994ef9d792SMatthew G. Knepley       for (cell = cStart; cell < cEnd; ++cell) {
30004ef9d792SMatthew G. Knepley         PetscInt *findices, *cindices;
30014ef9d792SMatthew G. Knepley         PetscInt  numFIndices, numCIndices;
30024ef9d792SMatthew G. Knepley 
30039566063dSJacob Faibussowitsch         PetscCall(DMPlexGetClosureIndices(dmf, fsection, globalFSection, cell, PETSC_FALSE, &numFIndices, &findices, NULL, NULL));
30049566063dSJacob Faibussowitsch         PetscCall(DMPlexComputeCellGeometryFEM(dmf, cell, NULL, v0, J, invJ, &detJ));
3005d0f6233fSMatthew G. Knepley         PetscCheck(numFIndices == totDim, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of fine indices %" PetscInt_FMT " != %" PetscInt_FMT " dual basis vecs", numFIndices, totDim);
30064ef9d792SMatthew G. Knepley         for (i = 0; i < fpdim; ++i) {
30074ef9d792SMatthew G. Knepley           Vec                pointVec;
30084ef9d792SMatthew G. Knepley           PetscScalar       *pV;
300912111d7cSToby Isaac           PetscSF            coarseCellSF = NULL;
30103a93e3b7SToby Isaac           const PetscSFNode *coarseCells;
3011d0f6233fSMatthew G. Knepley           PetscInt           numCoarseCells, cpdim, row = findices[i + off], q, c, j;
30124ef9d792SMatthew G. Knepley 
30134ef9d792SMatthew G. Knepley           /* Get points from the dual basis functional quadrature */
30149566063dSJacob Faibussowitsch           PetscCall(PetscDualSpaceGetFunctional(Q, i, &f));
30159566063dSJacob Faibussowitsch           PetscCall(PetscQuadratureGetData(f, NULL, &qNc, &Np, &qpoints, &qweights));
301663a3b9bcSJacob Faibussowitsch           PetscCheck(qNc == Nc, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of components in quadrature %" PetscInt_FMT " does not match coarse field %" PetscInt_FMT, qNc, Nc);
30179566063dSJacob Faibussowitsch           PetscCall(VecCreateSeq(PETSC_COMM_SELF, Np * dim, &pointVec));
30189566063dSJacob Faibussowitsch           PetscCall(VecSetBlockSize(pointVec, dim));
30199566063dSJacob Faibussowitsch           PetscCall(VecGetArray(pointVec, &pV));
30204ef9d792SMatthew G. Knepley           for (q = 0; q < Np; ++q) {
3021c330f8ffSToby Isaac             const PetscReal xi0[3] = {-1., -1., -1.};
3022c330f8ffSToby Isaac 
30234ef9d792SMatthew G. Knepley             /* Transform point to real space */
3024c330f8ffSToby Isaac             CoordinatesRefToReal(dim, dim, xi0, v0, J, &qpoints[q * dim], x);
30254ef9d792SMatthew G. Knepley             for (d = 0; d < dim; ++d) pV[q * dim + d] = x[d];
30264ef9d792SMatthew G. Knepley           }
30279566063dSJacob Faibussowitsch           PetscCall(VecRestoreArray(pointVec, &pV));
30284ef9d792SMatthew G. Knepley           /* Get set of coarse cells that overlap points (would like to group points by coarse cell) */
30291555c271SMatthew G. Knepley           /* OPT: Read this out from preallocation information */
30309566063dSJacob Faibussowitsch           PetscCall(DMLocatePoints(dmc, pointVec, DM_POINTLOCATION_NEAREST, &coarseCellSF));
30314ef9d792SMatthew G. Knepley           /* Update preallocation info */
30329566063dSJacob Faibussowitsch           PetscCall(PetscSFGetGraph(coarseCellSF, NULL, &numCoarseCells, NULL, &coarseCells));
30335f80ce2aSJacob Faibussowitsch           PetscCheck(numCoarseCells == Np, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Not all closure points located");
30349566063dSJacob Faibussowitsch           PetscCall(VecGetArray(pointVec, &pV));
30354ef9d792SMatthew G. Knepley           for (ccell = 0; ccell < numCoarseCells; ++ccell) {
3036826eb36dSMatthew G. Knepley             PetscReal       pVReal[3];
3037c330f8ffSToby Isaac             const PetscReal xi0[3] = {-1., -1., -1.};
3038826eb36dSMatthew G. Knepley 
30399566063dSJacob Faibussowitsch             PetscCall(DMPlexGetClosureIndices(dmc, csection, globalCSection, coarseCells[ccell].index, PETSC_FALSE, &numCIndices, &cindices, NULL, NULL));
3040a0806964SMatthew G. Knepley             if (id == PETSCFE_CLASSID) PetscCall(PetscFEGetDimension((PetscFE)obj, &cpdim));
3041a0806964SMatthew G. Knepley             else cpdim = 1;
3042a0806964SMatthew G. Knepley 
3043a0806964SMatthew G. Knepley             if (s) {
30444ef9d792SMatthew G. Knepley               /* Transform points from real space to coarse reference space */
30459566063dSJacob Faibussowitsch               PetscCall(DMPlexComputeCellGeometryFEM(dmc, coarseCells[ccell].index, NULL, v0c, Jc, invJc, &detJc));
3046e2d86523SMatthew G. Knepley               for (d = 0; d < dim; ++d) pVReal[d] = PetscRealPart(pV[ccell * dim + d]);
3047c330f8ffSToby Isaac               CoordinatesRealToRef(dim, dim, xi0, v0c, invJc, pVReal, x);
30484ef9d792SMatthew G. Knepley 
30494ef9d792SMatthew G. Knepley               if (id == PETSCFE_CLASSID) {
30504ef9d792SMatthew G. Knepley                 /* Evaluate coarse basis on contained point */
3051a0806964SMatthew G. Knepley                 PetscCall(PetscFEComputeTabulation((PetscFE)obj, 1, x, 0, T));
30529566063dSJacob Faibussowitsch                 PetscCall(PetscArrayzero(elemMat, cpdim));
30534ef9d792SMatthew G. Knepley                 /* Get elemMat entries by multiplying by weight */
30544ef9d792SMatthew G. Knepley                 for (j = 0; j < cpdim; ++j) {
3055ef0bb6c7SMatthew G. Knepley                   for (c = 0; c < Nc; ++c) elemMat[j] += T->T[0][j * Nc + c] * qweights[ccell * qNc + c];
30564ef9d792SMatthew G. Knepley                 }
30574ef9d792SMatthew G. Knepley               } else {
30584ef9d792SMatthew G. Knepley                 for (j = 0; j < cpdim; ++j) {
30599c3cf19fSMatthew G. Knepley                   for (c = 0; c < Nc; ++c) elemMat[j] += 1.0 * qweights[ccell * qNc + c];
30604ef9d792SMatthew G. Knepley                 }
30614ef9d792SMatthew G. Knepley               }
30629566063dSJacob Faibussowitsch               if (mesh->printFEM > 1) PetscCall(DMPrintCellMatrix(cell, name, 1, numCIndices, elemMat));
3063a0806964SMatthew G. Knepley             }
3064a0806964SMatthew G. Knepley             /* Update interpolator */
3065d0f6233fSMatthew G. Knepley             PetscCheck(numCIndices == totDim, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Number of element matrix columns %" PetscInt_FMT " != %" PetscInt_FMT, numCIndices, totDim);
3066a0806964SMatthew G. Knepley             PetscCall(MatSetValues(interp, 1, &row, cpdim, &cindices[off], elemMat, INSERT_VALUES));
30679566063dSJacob Faibussowitsch             PetscCall(DMPlexRestoreClosureIndices(dmc, csection, globalCSection, coarseCells[ccell].index, PETSC_FALSE, &numCIndices, &cindices, NULL, NULL));
30684ef9d792SMatthew G. Knepley           }
30699566063dSJacob Faibussowitsch           PetscCall(VecRestoreArray(pointVec, &pV));
30709566063dSJacob Faibussowitsch           PetscCall(PetscSFDestroy(&coarseCellSF));
30719566063dSJacob Faibussowitsch           PetscCall(VecDestroy(&pointVec));
30724ef9d792SMatthew G. Knepley         }
30739566063dSJacob Faibussowitsch         PetscCall(DMPlexRestoreClosureIndices(dmf, fsection, globalFSection, cell, PETSC_FALSE, &numFIndices, &findices, NULL, NULL));
30744ef9d792SMatthew G. Knepley       }
3075a0806964SMatthew G. Knepley       if (s && id == PETSCFE_CLASSID) PetscCall(PetscTabulationDestroy(&T));
3076a0806964SMatthew G. Knepley     }
3077a0806964SMatthew G. Knepley     if (!s) {
3078a0806964SMatthew G. Knepley       PetscCall(MatAssemblyBegin(interp, MAT_FINAL_ASSEMBLY));
3079a0806964SMatthew G. Knepley       PetscCall(MatAssemblyEnd(interp, MAT_FINAL_ASSEMBLY));
3080a0806964SMatthew G. Knepley       PetscCall(MatPreallocatorPreallocate(interp, PETSC_TRUE, In));
3081a0806964SMatthew G. Knepley       PetscCall(MatDestroy(&interp));
3082a0806964SMatthew G. Knepley       interp = In;
3083a0806964SMatthew G. Knepley     }
30844ef9d792SMatthew G. Knepley   }
30859566063dSJacob Faibussowitsch   PetscCall(PetscFree3(v0, J, invJ));
30869566063dSJacob Faibussowitsch   PetscCall(PetscFree3(v0c, Jc, invJc));
30879566063dSJacob Faibussowitsch   PetscCall(PetscFree(elemMat));
30889566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(In, MAT_FINAL_ASSEMBLY));
30899566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(In, MAT_FINAL_ASSEMBLY));
30909566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(DMPLEX_InterpolatorFEM, dmc, dmf, 0, 0));
30913ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
30924ef9d792SMatthew G. Knepley }
30934ef9d792SMatthew G. Knepley 
309446fa42a0SMatthew G. Knepley /*@
3095*0318f8a0SStefano Zampini   DMPlexComputeMassMatrixGeneral - Form the local portion of the mass matrix from the coarse `DM` to a non-nested fine `DM`.
3096bd041c0cSMatthew G. Knepley 
3097bd041c0cSMatthew G. Knepley   Input Parameters:
3098bd041c0cSMatthew G. Knepley + dmf  - The fine mesh
3099bd041c0cSMatthew G. Knepley . dmc  - The coarse mesh
3100bd041c0cSMatthew G. Knepley - user - The user context
3101bd041c0cSMatthew G. Knepley 
3102bd041c0cSMatthew G. Knepley   Output Parameter:
3103bd041c0cSMatthew G. Knepley . mass - The mass matrix
3104bd041c0cSMatthew G. Knepley 
3105bd041c0cSMatthew G. Knepley   Level: developer
3106bd041c0cSMatthew G. Knepley 
31071cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexComputeMassMatrixNested()`, `DMPlexComputeInterpolatorNested()`, `DMPlexComputeInterpolatorGeneral()`, `DMPlexComputeJacobianFEM()`
3108bd041c0cSMatthew G. Knepley @*/
3109d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeMassMatrixGeneral(DM dmc, DM dmf, Mat mass, void *user)
3110d71ae5a4SJacob Faibussowitsch {
3111bd041c0cSMatthew G. Knepley   DM_Plex     *mesh = (DM_Plex *)dmf->data;
3112bd041c0cSMatthew G. Knepley   const char  *name = "Mass Matrix";
3113bd041c0cSMatthew G. Knepley   PetscDS      prob;
3114bd041c0cSMatthew G. Knepley   PetscSection fsection, csection, globalFSection, globalCSection;
3115e8f14785SLisandro Dalcin   PetscHSetIJ  ht;
3116bd041c0cSMatthew G. Knepley   PetscLayout  rLayout;
3117bd041c0cSMatthew G. Knepley   PetscInt    *dnz, *onz;
3118bd041c0cSMatthew G. Knepley   PetscInt     locRows, rStart, rEnd;
3119bd041c0cSMatthew G. Knepley   PetscReal   *x, *v0, *J, *invJ, detJ;
3120bd041c0cSMatthew G. Knepley   PetscReal   *v0c, *Jc, *invJc, detJc;
3121bd041c0cSMatthew G. Knepley   PetscScalar *elemMat;
3122bd041c0cSMatthew G. Knepley   PetscInt     dim, Nf, field, totDim, cStart, cEnd, cell, ccell;
3123bd041c0cSMatthew G. Knepley 
3124bd041c0cSMatthew G. Knepley   PetscFunctionBegin;
31259566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateDim(dmc, &dim));
31269566063dSJacob Faibussowitsch   PetscCall(DMGetDS(dmc, &prob));
31279566063dSJacob Faibussowitsch   PetscCall(PetscDSGetWorkspace(prob, &x, NULL, NULL, NULL, NULL));
31289566063dSJacob Faibussowitsch   PetscCall(PetscDSGetNumFields(prob, &Nf));
31299566063dSJacob Faibussowitsch   PetscCall(PetscMalloc3(dim, &v0, dim * dim, &J, dim * dim, &invJ));
31309566063dSJacob Faibussowitsch   PetscCall(PetscMalloc3(dim, &v0c, dim * dim, &Jc, dim * dim, &invJc));
31319566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dmf, &fsection));
31329566063dSJacob Faibussowitsch   PetscCall(DMGetGlobalSection(dmf, &globalFSection));
31339566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dmc, &csection));
31349566063dSJacob Faibussowitsch   PetscCall(DMGetGlobalSection(dmc, &globalCSection));
31359566063dSJacob Faibussowitsch   PetscCall(DMPlexGetHeightStratum(dmf, 0, &cStart, &cEnd));
31369566063dSJacob Faibussowitsch   PetscCall(PetscDSGetTotalDimension(prob, &totDim));
31379566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(totDim, &elemMat));
3138bd041c0cSMatthew G. Knepley 
31399566063dSJacob Faibussowitsch   PetscCall(MatGetLocalSize(mass, &locRows, NULL));
31409566063dSJacob Faibussowitsch   PetscCall(PetscLayoutCreate(PetscObjectComm((PetscObject)mass), &rLayout));
31419566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetLocalSize(rLayout, locRows));
31429566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetBlockSize(rLayout, 1));
31439566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(rLayout));
31449566063dSJacob Faibussowitsch   PetscCall(PetscLayoutGetRange(rLayout, &rStart, &rEnd));
31459566063dSJacob Faibussowitsch   PetscCall(PetscLayoutDestroy(&rLayout));
31469566063dSJacob Faibussowitsch   PetscCall(PetscCalloc2(locRows, &dnz, locRows, &onz));
31479566063dSJacob Faibussowitsch   PetscCall(PetscHSetIJCreate(&ht));
3148bd041c0cSMatthew G. Knepley   for (field = 0; field < Nf; ++field) {
3149bd041c0cSMatthew G. Knepley     PetscObject      obj;
3150bd041c0cSMatthew G. Knepley     PetscClassId     id;
3151bd041c0cSMatthew G. Knepley     PetscQuadrature  quad;
3152bd041c0cSMatthew G. Knepley     const PetscReal *qpoints;
3153bd041c0cSMatthew G. Knepley     PetscInt         Nq, Nc, i, d;
3154bd041c0cSMatthew G. Knepley 
31559566063dSJacob Faibussowitsch     PetscCall(PetscDSGetDiscretization(prob, field, &obj));
31569566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetClassId(obj, &id));
31579566063dSJacob Faibussowitsch     if (id == PETSCFE_CLASSID) PetscCall(PetscFEGetQuadrature((PetscFE)obj, &quad));
31589566063dSJacob Faibussowitsch     else PetscCall(PetscFVGetQuadrature((PetscFV)obj, &quad));
31599566063dSJacob Faibussowitsch     PetscCall(PetscQuadratureGetData(quad, NULL, &Nc, &Nq, &qpoints, NULL));
3160bd041c0cSMatthew G. Knepley     /* For each fine grid cell */
3161bd041c0cSMatthew G. Knepley     for (cell = cStart; cell < cEnd; ++cell) {
3162bd041c0cSMatthew G. Knepley       Vec                pointVec;
3163bd041c0cSMatthew G. Knepley       PetscScalar       *pV;
3164bd041c0cSMatthew G. Knepley       PetscSF            coarseCellSF = NULL;
3165bd041c0cSMatthew G. Knepley       const PetscSFNode *coarseCells;
3166bd041c0cSMatthew G. Knepley       PetscInt           numCoarseCells, q, c;
3167bd041c0cSMatthew G. Knepley       PetscInt          *findices, *cindices;
3168bd041c0cSMatthew G. Knepley       PetscInt           numFIndices, numCIndices;
3169bd041c0cSMatthew G. Knepley 
31709566063dSJacob Faibussowitsch       PetscCall(DMPlexGetClosureIndices(dmf, fsection, globalFSection, cell, PETSC_FALSE, &numFIndices, &findices, NULL, NULL));
31719566063dSJacob Faibussowitsch       PetscCall(DMPlexComputeCellGeometryFEM(dmf, cell, NULL, v0, J, invJ, &detJ));
3172bd041c0cSMatthew G. Knepley       /* Get points from the quadrature */
31739566063dSJacob Faibussowitsch       PetscCall(VecCreateSeq(PETSC_COMM_SELF, Nq * dim, &pointVec));
31749566063dSJacob Faibussowitsch       PetscCall(VecSetBlockSize(pointVec, dim));
31759566063dSJacob Faibussowitsch       PetscCall(VecGetArray(pointVec, &pV));
3176bd041c0cSMatthew G. Knepley       for (q = 0; q < Nq; ++q) {
3177c330f8ffSToby Isaac         const PetscReal xi0[3] = {-1., -1., -1.};
3178c330f8ffSToby Isaac 
3179bd041c0cSMatthew G. Knepley         /* Transform point to real space */
3180c330f8ffSToby Isaac         CoordinatesRefToReal(dim, dim, xi0, v0, J, &qpoints[q * dim], x);
3181bd041c0cSMatthew G. Knepley         for (d = 0; d < dim; ++d) pV[q * dim + d] = x[d];
3182bd041c0cSMatthew G. Knepley       }
31839566063dSJacob Faibussowitsch       PetscCall(VecRestoreArray(pointVec, &pV));
3184bd041c0cSMatthew G. Knepley       /* Get set of coarse cells that overlap points (would like to group points by coarse cell) */
31859566063dSJacob Faibussowitsch       PetscCall(DMLocatePoints(dmc, pointVec, DM_POINTLOCATION_NEAREST, &coarseCellSF));
31869566063dSJacob Faibussowitsch       PetscCall(PetscSFViewFromOptions(coarseCellSF, NULL, "-interp_sf_view"));
3187bd041c0cSMatthew G. Knepley       /* Update preallocation info */
31889566063dSJacob Faibussowitsch       PetscCall(PetscSFGetGraph(coarseCellSF, NULL, &numCoarseCells, NULL, &coarseCells));
31895f80ce2aSJacob Faibussowitsch       PetscCheck(numCoarseCells == Nq, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Not all closure points located");
3190bd041c0cSMatthew G. Knepley       {
3191e8f14785SLisandro Dalcin         PetscHashIJKey key;
3192e8f14785SLisandro Dalcin         PetscBool      missing;
3193bd041c0cSMatthew G. Knepley 
3194bd041c0cSMatthew G. Knepley         for (i = 0; i < numFIndices; ++i) {
3195e8f14785SLisandro Dalcin           key.i = findices[i];
3196e8f14785SLisandro Dalcin           if (key.i >= 0) {
3197bd041c0cSMatthew G. Knepley             /* Get indices for coarse elements */
3198bd041c0cSMatthew G. Knepley             for (ccell = 0; ccell < numCoarseCells; ++ccell) {
31999566063dSJacob Faibussowitsch               PetscCall(DMPlexGetClosureIndices(dmc, csection, globalCSection, coarseCells[ccell].index, PETSC_FALSE, &numCIndices, &cindices, NULL, NULL));
3200bd041c0cSMatthew G. Knepley               for (c = 0; c < numCIndices; ++c) {
3201e8f14785SLisandro Dalcin                 key.j = cindices[c];
3202e8f14785SLisandro Dalcin                 if (key.j < 0) continue;
32039566063dSJacob Faibussowitsch                 PetscCall(PetscHSetIJQueryAdd(ht, key, &missing));
3204bd041c0cSMatthew G. Knepley                 if (missing) {
3205e8f14785SLisandro Dalcin                   if ((key.j >= rStart) && (key.j < rEnd)) ++dnz[key.i - rStart];
3206e8f14785SLisandro Dalcin                   else ++onz[key.i - rStart];
3207bd041c0cSMatthew G. Knepley                 }
3208bd041c0cSMatthew G. Knepley               }
32099566063dSJacob Faibussowitsch               PetscCall(DMPlexRestoreClosureIndices(dmc, csection, globalCSection, coarseCells[ccell].index, PETSC_FALSE, &numCIndices, &cindices, NULL, NULL));
3210bd041c0cSMatthew G. Knepley             }
3211bd041c0cSMatthew G. Knepley           }
3212bd041c0cSMatthew G. Knepley         }
3213bd041c0cSMatthew G. Knepley       }
32149566063dSJacob Faibussowitsch       PetscCall(PetscSFDestroy(&coarseCellSF));
32159566063dSJacob Faibussowitsch       PetscCall(VecDestroy(&pointVec));
32169566063dSJacob Faibussowitsch       PetscCall(DMPlexRestoreClosureIndices(dmf, fsection, globalFSection, cell, PETSC_FALSE, &numFIndices, &findices, NULL, NULL));
3217bd041c0cSMatthew G. Knepley     }
3218bd041c0cSMatthew G. Knepley   }
32199566063dSJacob Faibussowitsch   PetscCall(PetscHSetIJDestroy(&ht));
32209566063dSJacob Faibussowitsch   PetscCall(MatXAIJSetPreallocation(mass, 1, dnz, onz, NULL, NULL));
32219566063dSJacob Faibussowitsch   PetscCall(MatSetOption(mass, MAT_NEW_NONZERO_ALLOCATION_ERR, PETSC_TRUE));
32229566063dSJacob Faibussowitsch   PetscCall(PetscFree2(dnz, onz));
3223bd041c0cSMatthew G. Knepley   for (field = 0; field < Nf; ++field) {
3224bd041c0cSMatthew G. Knepley     PetscObject      obj;
3225bd041c0cSMatthew G. Knepley     PetscClassId     id;
3226ef0bb6c7SMatthew G. Knepley     PetscTabulation  T, Tfine;
3227bd041c0cSMatthew G. Knepley     PetscQuadrature  quad;
3228bd041c0cSMatthew G. Knepley     const PetscReal *qpoints, *qweights;
3229bd041c0cSMatthew G. Knepley     PetscInt         Nq, Nc, i, d;
3230bd041c0cSMatthew G. Knepley 
32319566063dSJacob Faibussowitsch     PetscCall(PetscDSGetDiscretization(prob, field, &obj));
32329566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetClassId(obj, &id));
3233ef0bb6c7SMatthew G. Knepley     if (id == PETSCFE_CLASSID) {
32349566063dSJacob Faibussowitsch       PetscCall(PetscFEGetQuadrature((PetscFE)obj, &quad));
32359566063dSJacob Faibussowitsch       PetscCall(PetscFEGetCellTabulation((PetscFE)obj, 1, &Tfine));
32369566063dSJacob Faibussowitsch       PetscCall(PetscFECreateTabulation((PetscFE)obj, 1, 1, x, 0, &T));
3237ef0bb6c7SMatthew G. Knepley     } else {
32389566063dSJacob Faibussowitsch       PetscCall(PetscFVGetQuadrature((PetscFV)obj, &quad));
3239ef0bb6c7SMatthew G. Knepley     }
32409566063dSJacob Faibussowitsch     PetscCall(PetscQuadratureGetData(quad, NULL, &Nc, &Nq, &qpoints, &qweights));
3241bd041c0cSMatthew G. Knepley     /* For each fine grid cell */
3242bd041c0cSMatthew G. Knepley     for (cell = cStart; cell < cEnd; ++cell) {
3243bd041c0cSMatthew G. Knepley       Vec                pointVec;
3244bd041c0cSMatthew G. Knepley       PetscScalar       *pV;
3245bd041c0cSMatthew G. Knepley       PetscSF            coarseCellSF = NULL;
3246bd041c0cSMatthew G. Knepley       const PetscSFNode *coarseCells;
3247bd041c0cSMatthew G. Knepley       PetscInt           numCoarseCells, cpdim, q, c, j;
3248bd041c0cSMatthew G. Knepley       PetscInt          *findices, *cindices;
3249bd041c0cSMatthew G. Knepley       PetscInt           numFIndices, numCIndices;
3250bd041c0cSMatthew G. Knepley 
32519566063dSJacob Faibussowitsch       PetscCall(DMPlexGetClosureIndices(dmf, fsection, globalFSection, cell, PETSC_FALSE, &numFIndices, &findices, NULL, NULL));
32529566063dSJacob Faibussowitsch       PetscCall(DMPlexComputeCellGeometryFEM(dmf, cell, NULL, v0, J, invJ, &detJ));
3253bd041c0cSMatthew G. Knepley       /* Get points from the quadrature */
32549566063dSJacob Faibussowitsch       PetscCall(VecCreateSeq(PETSC_COMM_SELF, Nq * dim, &pointVec));
32559566063dSJacob Faibussowitsch       PetscCall(VecSetBlockSize(pointVec, dim));
32569566063dSJacob Faibussowitsch       PetscCall(VecGetArray(pointVec, &pV));
3257bd041c0cSMatthew G. Knepley       for (q = 0; q < Nq; ++q) {
3258c330f8ffSToby Isaac         const PetscReal xi0[3] = {-1., -1., -1.};
3259c330f8ffSToby Isaac 
3260bd041c0cSMatthew G. Knepley         /* Transform point to real space */
3261c330f8ffSToby Isaac         CoordinatesRefToReal(dim, dim, xi0, v0, J, &qpoints[q * dim], x);
3262bd041c0cSMatthew G. Knepley         for (d = 0; d < dim; ++d) pV[q * dim + d] = x[d];
3263bd041c0cSMatthew G. Knepley       }
32649566063dSJacob Faibussowitsch       PetscCall(VecRestoreArray(pointVec, &pV));
3265bd041c0cSMatthew G. Knepley       /* Get set of coarse cells that overlap points (would like to group points by coarse cell) */
32669566063dSJacob Faibussowitsch       PetscCall(DMLocatePoints(dmc, pointVec, DM_POINTLOCATION_NEAREST, &coarseCellSF));
3267bd041c0cSMatthew G. Knepley       /* Update matrix */
32689566063dSJacob Faibussowitsch       PetscCall(PetscSFGetGraph(coarseCellSF, NULL, &numCoarseCells, NULL, &coarseCells));
32695f80ce2aSJacob Faibussowitsch       PetscCheck(numCoarseCells == Nq, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Not all closure points located");
32709566063dSJacob Faibussowitsch       PetscCall(VecGetArray(pointVec, &pV));
3271bd041c0cSMatthew G. Knepley       for (ccell = 0; ccell < numCoarseCells; ++ccell) {
3272bd041c0cSMatthew G. Knepley         PetscReal       pVReal[3];
3273c330f8ffSToby Isaac         const PetscReal xi0[3] = {-1., -1., -1.};
3274c330f8ffSToby Isaac 
32759566063dSJacob Faibussowitsch         PetscCall(DMPlexGetClosureIndices(dmc, csection, globalCSection, coarseCells[ccell].index, PETSC_FALSE, &numCIndices, &cindices, NULL, NULL));
3276bd041c0cSMatthew G. Knepley         /* Transform points from real space to coarse reference space */
32779566063dSJacob Faibussowitsch         PetscCall(DMPlexComputeCellGeometryFEM(dmc, coarseCells[ccell].index, NULL, v0c, Jc, invJc, &detJc));
3278bd041c0cSMatthew G. Knepley         for (d = 0; d < dim; ++d) pVReal[d] = PetscRealPart(pV[ccell * dim + d]);
3279c330f8ffSToby Isaac         CoordinatesRealToRef(dim, dim, xi0, v0c, invJc, pVReal, x);
3280bd041c0cSMatthew G. Knepley 
3281bd041c0cSMatthew G. Knepley         if (id == PETSCFE_CLASSID) {
3282bd041c0cSMatthew G. Knepley           PetscFE fe = (PetscFE)obj;
3283bd041c0cSMatthew G. Knepley 
3284bd041c0cSMatthew G. Knepley           /* Evaluate coarse basis on contained point */
32859566063dSJacob Faibussowitsch           PetscCall(PetscFEGetDimension(fe, &cpdim));
32869566063dSJacob Faibussowitsch           PetscCall(PetscFEComputeTabulation(fe, 1, x, 0, T));
3287bd041c0cSMatthew G. Knepley           /* Get elemMat entries by multiplying by weight */
3288bd041c0cSMatthew G. Knepley           for (i = 0; i < numFIndices; ++i) {
32899566063dSJacob Faibussowitsch             PetscCall(PetscArrayzero(elemMat, cpdim));
3290bd041c0cSMatthew G. Knepley             for (j = 0; j < cpdim; ++j) {
3291ef0bb6c7SMatthew G. Knepley               for (c = 0; c < Nc; ++c) elemMat[j] += T->T[0][j * Nc + c] * Tfine->T[0][(ccell * numFIndices + i) * Nc + c] * qweights[ccell * Nc + c] * detJ;
3292bd041c0cSMatthew G. Knepley             }
3293bd041c0cSMatthew G. Knepley             /* Update interpolator */
32949566063dSJacob Faibussowitsch             if (mesh->printFEM > 1) PetscCall(DMPrintCellMatrix(cell, name, 1, numCIndices, elemMat));
329563a3b9bcSJacob Faibussowitsch             PetscCheck(numCIndices == cpdim, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Number of element matrix columns %" PetscInt_FMT " != %" PetscInt_FMT, numCIndices, cpdim);
32969566063dSJacob Faibussowitsch             PetscCall(MatSetValues(mass, 1, &findices[i], numCIndices, cindices, elemMat, ADD_VALUES));
3297bd041c0cSMatthew G. Knepley           }
3298bd041c0cSMatthew G. Knepley         } else {
3299bd041c0cSMatthew G. Knepley           cpdim = 1;
3300bd041c0cSMatthew G. Knepley           for (i = 0; i < numFIndices; ++i) {
33019566063dSJacob Faibussowitsch             PetscCall(PetscArrayzero(elemMat, cpdim));
3302bd041c0cSMatthew G. Knepley             for (j = 0; j < cpdim; ++j) {
3303bd041c0cSMatthew G. Knepley               for (c = 0; c < Nc; ++c) elemMat[j] += 1.0 * 1.0 * qweights[ccell * Nc + c] * detJ;
3304bd041c0cSMatthew G. Knepley             }
3305bd041c0cSMatthew G. Knepley             /* Update interpolator */
33069566063dSJacob Faibussowitsch             if (mesh->printFEM > 1) PetscCall(DMPrintCellMatrix(cell, name, 1, numCIndices, elemMat));
330763a3b9bcSJacob Faibussowitsch             PetscCall(PetscPrintf(PETSC_COMM_SELF, "Nq: %" PetscInt_FMT " %" PetscInt_FMT " Nf: %" PetscInt_FMT " %" PetscInt_FMT " Nc: %" PetscInt_FMT " %" PetscInt_FMT "\n", ccell, Nq, i, numFIndices, j, numCIndices));
330863a3b9bcSJacob Faibussowitsch             PetscCheck(numCIndices == cpdim, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Number of element matrix columns %" PetscInt_FMT " != %" PetscInt_FMT, numCIndices, cpdim);
33099566063dSJacob Faibussowitsch             PetscCall(MatSetValues(mass, 1, &findices[i], numCIndices, cindices, elemMat, ADD_VALUES));
3310bd041c0cSMatthew G. Knepley           }
3311bd041c0cSMatthew G. Knepley         }
33129566063dSJacob Faibussowitsch         PetscCall(DMPlexRestoreClosureIndices(dmc, csection, globalCSection, coarseCells[ccell].index, PETSC_FALSE, &numCIndices, &cindices, NULL, NULL));
3313bd041c0cSMatthew G. Knepley       }
33149566063dSJacob Faibussowitsch       PetscCall(VecRestoreArray(pointVec, &pV));
33159566063dSJacob Faibussowitsch       PetscCall(PetscSFDestroy(&coarseCellSF));
33169566063dSJacob Faibussowitsch       PetscCall(VecDestroy(&pointVec));
33179566063dSJacob Faibussowitsch       PetscCall(DMPlexRestoreClosureIndices(dmf, fsection, globalFSection, cell, PETSC_FALSE, &numFIndices, &findices, NULL, NULL));
3318bd041c0cSMatthew G. Knepley     }
33199566063dSJacob Faibussowitsch     if (id == PETSCFE_CLASSID) PetscCall(PetscTabulationDestroy(&T));
3320bd041c0cSMatthew G. Knepley   }
33219566063dSJacob Faibussowitsch   PetscCall(PetscFree3(v0, J, invJ));
33229566063dSJacob Faibussowitsch   PetscCall(PetscFree3(v0c, Jc, invJc));
33239566063dSJacob Faibussowitsch   PetscCall(PetscFree(elemMat));
33249566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(mass, MAT_FINAL_ASSEMBLY));
33259566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(mass, MAT_FINAL_ASSEMBLY));
33263ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3327bd041c0cSMatthew G. Knepley }
3328bd041c0cSMatthew G. Knepley 
3329bd041c0cSMatthew G. Knepley /*@
333046fa42a0SMatthew G. Knepley   DMPlexComputeInjectorFEM - Compute a mapping from coarse unknowns to fine unknowns
333146fa42a0SMatthew G. Knepley 
333246fa42a0SMatthew G. Knepley   Input Parameters:
333346fa42a0SMatthew G. Knepley + dmc  - The coarse mesh
333460225df5SJacob Faibussowitsch . dmf  - The fine mesh
333546fa42a0SMatthew G. Knepley - user - The user context
333646fa42a0SMatthew G. Knepley 
333746fa42a0SMatthew G. Knepley   Output Parameter:
333846fa42a0SMatthew G. Knepley . sc - The mapping
333946fa42a0SMatthew G. Knepley 
334046fa42a0SMatthew G. Knepley   Level: developer
334146fa42a0SMatthew G. Knepley 
33421cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexComputeInterpolatorNested()`, `DMPlexComputeJacobianFEM()`
334346fa42a0SMatthew G. Knepley @*/
3344d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeInjectorFEM(DM dmc, DM dmf, VecScatter *sc, void *user)
3345d71ae5a4SJacob Faibussowitsch {
3346e9d4ef1bSMatthew G. Knepley   PetscDS      prob;
33477c927364SMatthew G. Knepley   PetscFE     *feRef;
334897c42addSMatthew G. Knepley   PetscFV     *fvRef;
33497c927364SMatthew G. Knepley   Vec          fv, cv;
33507c927364SMatthew G. Knepley   IS           fis, cis;
33517c927364SMatthew G. Knepley   PetscSection fsection, fglobalSection, csection, cglobalSection;
33527c927364SMatthew G. Knepley   PetscInt    *cmap, *cellCIndices, *cellFIndices, *cindices, *findices;
3353485ad865SMatthew G. Knepley   PetscInt     cTotDim, fTotDim = 0, Nf, f, field, cStart, cEnd, c, dim, d, startC, endC, offsetC, offsetF, m;
33546f3d3cbcSMatthew G. Knepley   PetscBool   *needAvg;
33557c927364SMatthew G. Knepley 
33567c927364SMatthew G. Knepley   PetscFunctionBegin;
33579566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(DMPLEX_InjectorFEM, dmc, dmf, 0, 0));
33589566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dmf, &dim));
33599566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dmf, &fsection));
33609566063dSJacob Faibussowitsch   PetscCall(DMGetGlobalSection(dmf, &fglobalSection));
33619566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dmc, &csection));
33629566063dSJacob Faibussowitsch   PetscCall(DMGetGlobalSection(dmc, &cglobalSection));
33639566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetNumFields(fsection, &Nf));
33649566063dSJacob Faibussowitsch   PetscCall(DMPlexGetSimplexOrBoxCells(dmc, 0, &cStart, &cEnd));
33659566063dSJacob Faibussowitsch   PetscCall(DMGetDS(dmc, &prob));
33669566063dSJacob Faibussowitsch   PetscCall(PetscCalloc3(Nf, &feRef, Nf, &fvRef, Nf, &needAvg));
33677c927364SMatthew G. Knepley   for (f = 0; f < Nf; ++f) {
336897c42addSMatthew G. Knepley     PetscObject  obj;
336997c42addSMatthew G. Knepley     PetscClassId id;
3370aa7890ccSMatthew G. Knepley     PetscInt     fNb = 0, Nc = 0;
33717c927364SMatthew G. Knepley 
33729566063dSJacob Faibussowitsch     PetscCall(PetscDSGetDiscretization(prob, f, &obj));
33739566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetClassId(obj, &id));
337497c42addSMatthew G. Knepley     if (id == PETSCFE_CLASSID) {
337597c42addSMatthew G. Knepley       PetscFE    fe = (PetscFE)obj;
33766f3d3cbcSMatthew G. Knepley       PetscSpace sp;
33779b2fc754SMatthew G. Knepley       PetscInt   maxDegree;
337897c42addSMatthew G. Knepley 
33799566063dSJacob Faibussowitsch       PetscCall(PetscFERefine(fe, &feRef[f]));
33809566063dSJacob Faibussowitsch       PetscCall(PetscFEGetDimension(feRef[f], &fNb));
33819566063dSJacob Faibussowitsch       PetscCall(PetscFEGetNumComponents(fe, &Nc));
33829566063dSJacob Faibussowitsch       PetscCall(PetscFEGetBasisSpace(fe, &sp));
33839566063dSJacob Faibussowitsch       PetscCall(PetscSpaceGetDegree(sp, NULL, &maxDegree));
33849b2fc754SMatthew G. Knepley       if (!maxDegree) needAvg[f] = PETSC_TRUE;
338597c42addSMatthew G. Knepley     } else if (id == PETSCFV_CLASSID) {
338697c42addSMatthew G. Knepley       PetscFV        fv = (PetscFV)obj;
338797c42addSMatthew G. Knepley       PetscDualSpace Q;
338897c42addSMatthew G. Knepley 
33899566063dSJacob Faibussowitsch       PetscCall(PetscFVRefine(fv, &fvRef[f]));
33909566063dSJacob Faibussowitsch       PetscCall(PetscFVGetDualSpace(fvRef[f], &Q));
33919566063dSJacob Faibussowitsch       PetscCall(PetscDualSpaceGetDimension(Q, &fNb));
33929566063dSJacob Faibussowitsch       PetscCall(PetscFVGetNumComponents(fv, &Nc));
33936f3d3cbcSMatthew G. Knepley       needAvg[f] = PETSC_TRUE;
339497c42addSMatthew G. Knepley     }
3395d172c84bSMatthew G. Knepley     fTotDim += fNb;
33967c927364SMatthew G. Knepley   }
33979566063dSJacob Faibussowitsch   PetscCall(PetscDSGetTotalDimension(prob, &cTotDim));
33989566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(cTotDim, &cmap));
33997c927364SMatthew G. Knepley   for (field = 0, offsetC = 0, offsetF = 0; field < Nf; ++field) {
34007c927364SMatthew G. Knepley     PetscFE        feC;
340197c42addSMatthew G. Knepley     PetscFV        fvC;
34027c927364SMatthew G. Knepley     PetscDualSpace QF, QC;
3403d172c84bSMatthew G. Knepley     PetscInt       order = -1, NcF, NcC, fpdim, cpdim;
34047c927364SMatthew G. Knepley 
340597c42addSMatthew G. Knepley     if (feRef[field]) {
34069566063dSJacob Faibussowitsch       PetscCall(PetscDSGetDiscretization(prob, field, (PetscObject *)&feC));
34079566063dSJacob Faibussowitsch       PetscCall(PetscFEGetNumComponents(feC, &NcC));
34089566063dSJacob Faibussowitsch       PetscCall(PetscFEGetNumComponents(feRef[field], &NcF));
34099566063dSJacob Faibussowitsch       PetscCall(PetscFEGetDualSpace(feRef[field], &QF));
34109566063dSJacob Faibussowitsch       PetscCall(PetscDualSpaceGetOrder(QF, &order));
34119566063dSJacob Faibussowitsch       PetscCall(PetscDualSpaceGetDimension(QF, &fpdim));
34129566063dSJacob Faibussowitsch       PetscCall(PetscFEGetDualSpace(feC, &QC));
34139566063dSJacob Faibussowitsch       PetscCall(PetscDualSpaceGetDimension(QC, &cpdim));
341497c42addSMatthew G. Knepley     } else {
34159566063dSJacob Faibussowitsch       PetscCall(PetscDSGetDiscretization(prob, field, (PetscObject *)&fvC));
34169566063dSJacob Faibussowitsch       PetscCall(PetscFVGetNumComponents(fvC, &NcC));
34179566063dSJacob Faibussowitsch       PetscCall(PetscFVGetNumComponents(fvRef[field], &NcF));
34189566063dSJacob Faibussowitsch       PetscCall(PetscFVGetDualSpace(fvRef[field], &QF));
34199566063dSJacob Faibussowitsch       PetscCall(PetscDualSpaceGetDimension(QF, &fpdim));
34209566063dSJacob Faibussowitsch       PetscCall(PetscFVGetDualSpace(fvC, &QC));
34219566063dSJacob Faibussowitsch       PetscCall(PetscDualSpaceGetDimension(QC, &cpdim));
342297c42addSMatthew G. Knepley     }
342363a3b9bcSJacob Faibussowitsch     PetscCheck(NcF == NcC, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of components in fine space field %" PetscInt_FMT " does not match coarse field %" PetscInt_FMT, NcF, NcC);
34247c927364SMatthew G. Knepley     for (c = 0; c < cpdim; ++c) {
34257c927364SMatthew G. Knepley       PetscQuadrature  cfunc;
3426d172c84bSMatthew G. Knepley       const PetscReal *cqpoints, *cqweights;
3427d172c84bSMatthew G. Knepley       PetscInt         NqcC, NpC;
342897c42addSMatthew G. Knepley       PetscBool        found = PETSC_FALSE;
34297c927364SMatthew G. Knepley 
34309566063dSJacob Faibussowitsch       PetscCall(PetscDualSpaceGetFunctional(QC, c, &cfunc));
34319566063dSJacob Faibussowitsch       PetscCall(PetscQuadratureGetData(cfunc, NULL, &NqcC, &NpC, &cqpoints, &cqweights));
343263a3b9bcSJacob Faibussowitsch       PetscCheck(NqcC == NcC, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of quadrature components %" PetscInt_FMT " must match number of field components %" PetscInt_FMT, NqcC, NcC);
34331dca8a05SBarry Smith       PetscCheck(NpC == 1 || !feRef[field], PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Do not know how to do injection for moments");
34347c927364SMatthew G. Knepley       for (f = 0; f < fpdim; ++f) {
34357c927364SMatthew G. Knepley         PetscQuadrature  ffunc;
3436d172c84bSMatthew G. Knepley         const PetscReal *fqpoints, *fqweights;
34377c927364SMatthew G. Knepley         PetscReal        sum = 0.0;
3438d172c84bSMatthew G. Knepley         PetscInt         NqcF, NpF;
34397c927364SMatthew G. Knepley 
34409566063dSJacob Faibussowitsch         PetscCall(PetscDualSpaceGetFunctional(QF, f, &ffunc));
34419566063dSJacob Faibussowitsch         PetscCall(PetscQuadratureGetData(ffunc, NULL, &NqcF, &NpF, &fqpoints, &fqweights));
344263a3b9bcSJacob Faibussowitsch         PetscCheck(NqcF == NcF, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of quadrature components %" PetscInt_FMT " must match number of field components %" PetscInt_FMT, NqcF, NcF);
34437c927364SMatthew G. Knepley         if (NpC != NpF) continue;
34447c927364SMatthew G. Knepley         for (d = 0; d < dim; ++d) sum += PetscAbsReal(cqpoints[d] - fqpoints[d]);
34457c927364SMatthew G. Knepley         if (sum > 1.0e-9) continue;
3446d172c84bSMatthew G. Knepley         for (d = 0; d < NcC; ++d) sum += PetscAbsReal(cqweights[d] * fqweights[d]);
3447d172c84bSMatthew G. Knepley         if (sum < 1.0e-9) continue;
3448d172c84bSMatthew G. Knepley         cmap[offsetC + c] = offsetF + f;
344997c42addSMatthew G. Knepley         found             = PETSC_TRUE;
34507c927364SMatthew G. Knepley         break;
34517c927364SMatthew G. Knepley       }
345297c42addSMatthew G. Knepley       if (!found) {
345397c42addSMatthew G. Knepley         /* TODO We really want the average here, but some asshole put VecScatter in the interface */
3454d172c84bSMatthew G. Knepley         if (fvRef[field] || (feRef[field] && order == 0)) {
3455d172c84bSMatthew G. Knepley           cmap[offsetC + c] = offsetF + 0;
345697c42addSMatthew G. Knepley         } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Could not locate matching functional for injection");
345797c42addSMatthew G. Knepley       }
34587c927364SMatthew G. Knepley     }
3459d172c84bSMatthew G. Knepley     offsetC += cpdim;
3460d172c84bSMatthew G. Knepley     offsetF += fpdim;
34617c927364SMatthew G. Knepley   }
34629371c9d4SSatish Balay   for (f = 0; f < Nf; ++f) {
34639371c9d4SSatish Balay     PetscCall(PetscFEDestroy(&feRef[f]));
34649371c9d4SSatish Balay     PetscCall(PetscFVDestroy(&fvRef[f]));
34659371c9d4SSatish Balay   }
34669566063dSJacob Faibussowitsch   PetscCall(PetscFree3(feRef, fvRef, needAvg));
34677c927364SMatthew G. Knepley 
34689566063dSJacob Faibussowitsch   PetscCall(DMGetGlobalVector(dmf, &fv));
34699566063dSJacob Faibussowitsch   PetscCall(DMGetGlobalVector(dmc, &cv));
34709566063dSJacob Faibussowitsch   PetscCall(VecGetOwnershipRange(cv, &startC, &endC));
34719566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetConstrainedStorageSize(cglobalSection, &m));
34729566063dSJacob Faibussowitsch   PetscCall(PetscMalloc2(cTotDim, &cellCIndices, fTotDim, &cellFIndices));
34739566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(m, &cindices));
34749566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(m, &findices));
34757c927364SMatthew G. Knepley   for (d = 0; d < m; ++d) cindices[d] = findices[d] = -1;
34767c927364SMatthew G. Knepley   for (c = cStart; c < cEnd; ++c) {
34779566063dSJacob Faibussowitsch     PetscCall(DMPlexMatGetClosureIndicesRefined(dmf, fsection, fglobalSection, dmc, csection, cglobalSection, c, cellCIndices, cellFIndices));
34787c927364SMatthew G. Knepley     for (d = 0; d < cTotDim; ++d) {
34790bd915a7SMatthew G. Knepley       if ((cellCIndices[d] < startC) || (cellCIndices[d] >= endC)) continue;
3480d2457c26SMatthew G. Knepley       PetscCheck(!(findices[cellCIndices[d] - startC] >= 0) || !(findices[cellCIndices[d] - startC] != cellFIndices[cmap[d]]), PETSC_COMM_SELF, PETSC_ERR_PLIB, "Cell %" PetscInt_FMT " Coarse dof %" PetscInt_FMT " maps to both %" PetscInt_FMT " and %" PetscInt_FMT, c, cindices[cellCIndices[d] - startC], findices[cellCIndices[d] - startC], cellFIndices[cmap[d]]);
34817c927364SMatthew G. Knepley       cindices[cellCIndices[d] - startC] = cellCIndices[d];
34827c927364SMatthew G. Knepley       findices[cellCIndices[d] - startC] = cellFIndices[cmap[d]];
34837c927364SMatthew G. Knepley     }
34847c927364SMatthew G. Knepley   }
34859566063dSJacob Faibussowitsch   PetscCall(PetscFree(cmap));
34869566063dSJacob Faibussowitsch   PetscCall(PetscFree2(cellCIndices, cellFIndices));
34877c927364SMatthew G. Knepley 
34889566063dSJacob Faibussowitsch   PetscCall(ISCreateGeneral(PETSC_COMM_SELF, m, cindices, PETSC_OWN_POINTER, &cis));
34899566063dSJacob Faibussowitsch   PetscCall(ISCreateGeneral(PETSC_COMM_SELF, m, findices, PETSC_OWN_POINTER, &fis));
34909566063dSJacob Faibussowitsch   PetscCall(VecScatterCreate(cv, cis, fv, fis, sc));
34919566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&cis));
34929566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&fis));
34939566063dSJacob Faibussowitsch   PetscCall(DMRestoreGlobalVector(dmf, &fv));
34949566063dSJacob Faibussowitsch   PetscCall(DMRestoreGlobalVector(dmc, &cv));
34959566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(DMPLEX_InjectorFEM, dmc, dmf, 0, 0));
34963ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3497cb1e1211SMatthew G Knepley }
3498a1cf66bbSMatthew G. Knepley 
34992f856554SMatthew G. Knepley /*@C
35002f856554SMatthew G. Knepley   DMPlexGetCellFields - Retrieve the field values values for a chunk of cells
35012f856554SMatthew G. Knepley 
35022f856554SMatthew G. Knepley   Input Parameters:
3503a1cb98faSBarry Smith + dm     - The `DM`
35042f856554SMatthew G. Knepley . cellIS - The cells to include
35052f856554SMatthew G. Knepley . locX   - A local vector with the solution fields
35062f856554SMatthew G. Knepley . locX_t - A local vector with solution field time derivatives, or NULL
35072f856554SMatthew G. Knepley - locA   - A local vector with auxiliary fields, or NULL
35082f856554SMatthew G. Knepley 
35092f856554SMatthew G. Knepley   Output Parameters:
35102f856554SMatthew G. Knepley + u   - The field coefficients
35112f856554SMatthew G. Knepley . u_t - The fields derivative coefficients
35122f856554SMatthew G. Knepley - a   - The auxiliary field coefficients
35132f856554SMatthew G. Knepley 
35142f856554SMatthew G. Knepley   Level: developer
35152f856554SMatthew G. Knepley 
35161cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexGetFaceFields()`
35172f856554SMatthew G. Knepley @*/
3518d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexGetCellFields(DM dm, IS cellIS, Vec locX, Vec locX_t, Vec locA, PetscScalar **u, PetscScalar **u_t, PetscScalar **a)
3519d71ae5a4SJacob Faibussowitsch {
35202f856554SMatthew G. Knepley   DM              plex, plexA = NULL;
3521a6e0b375SMatthew G. Knepley   DMEnclosureType encAux;
35222f856554SMatthew G. Knepley   PetscSection    section, sectionAux;
35232f856554SMatthew G. Knepley   PetscDS         prob;
35242f856554SMatthew G. Knepley   const PetscInt *cells;
35252f856554SMatthew G. Knepley   PetscInt        cStart, cEnd, numCells, totDim, totDimAux, c;
35262f856554SMatthew G. Knepley 
35272f856554SMatthew G. Knepley   PetscFunctionBegin;
35282f856554SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
3529064a246eSJacob Faibussowitsch   PetscValidHeaderSpecific(locX, VEC_CLASSID, 3);
3530ad540459SPierre Jolivet   if (locX_t) PetscValidHeaderSpecific(locX_t, VEC_CLASSID, 4);
3531ad540459SPierre Jolivet   if (locA) PetscValidHeaderSpecific(locA, VEC_CLASSID, 5);
35324f572ea9SToby Isaac   PetscAssertPointer(u, 6);
35334f572ea9SToby Isaac   PetscAssertPointer(u_t, 7);
35344f572ea9SToby Isaac   PetscAssertPointer(a, 8);
35359566063dSJacob Faibussowitsch   PetscCall(DMPlexConvertPlex(dm, &plex, PETSC_FALSE));
35369566063dSJacob Faibussowitsch   PetscCall(ISGetPointRange(cellIS, &cStart, &cEnd, &cells));
35379566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dm, &section));
353807218a29SMatthew G. Knepley   PetscCall(DMGetCellDS(dm, cells ? cells[cStart] : cStart, &prob, NULL));
35399566063dSJacob Faibussowitsch   PetscCall(PetscDSGetTotalDimension(prob, &totDim));
35402f856554SMatthew G. Knepley   if (locA) {
35412f856554SMatthew G. Knepley     DM      dmAux;
35422f856554SMatthew G. Knepley     PetscDS probAux;
35432f856554SMatthew G. Knepley 
35449566063dSJacob Faibussowitsch     PetscCall(VecGetDM(locA, &dmAux));
35459566063dSJacob Faibussowitsch     PetscCall(DMGetEnclosureRelation(dmAux, dm, &encAux));
35469566063dSJacob Faibussowitsch     PetscCall(DMPlexConvertPlex(dmAux, &plexA, PETSC_FALSE));
35479566063dSJacob Faibussowitsch     PetscCall(DMGetLocalSection(dmAux, &sectionAux));
35489566063dSJacob Faibussowitsch     PetscCall(DMGetDS(dmAux, &probAux));
35499566063dSJacob Faibussowitsch     PetscCall(PetscDSGetTotalDimension(probAux, &totDimAux));
35502f856554SMatthew G. Knepley   }
35512f856554SMatthew G. Knepley   numCells = cEnd - cStart;
35529566063dSJacob Faibussowitsch   PetscCall(DMGetWorkArray(dm, numCells * totDim, MPIU_SCALAR, u));
35539371c9d4SSatish Balay   if (locX_t) PetscCall(DMGetWorkArray(dm, numCells * totDim, MPIU_SCALAR, u_t));
3554ad540459SPierre Jolivet   else *u_t = NULL;
35559371c9d4SSatish Balay   if (locA) PetscCall(DMGetWorkArray(dm, numCells * totDimAux, MPIU_SCALAR, a));
3556ad540459SPierre Jolivet   else *a = NULL;
35572f856554SMatthew G. Knepley   for (c = cStart; c < cEnd; ++c) {
35582f856554SMatthew G. Knepley     const PetscInt cell = cells ? cells[c] : c;
35592f856554SMatthew G. Knepley     const PetscInt cind = c - cStart;
35602f856554SMatthew G. Knepley     PetscScalar   *x = NULL, *x_t = NULL, *ul = *u, *ul_t = *u_t, *al = *a;
35612f856554SMatthew G. Knepley     PetscInt       i;
35622f856554SMatthew G. Knepley 
35639566063dSJacob Faibussowitsch     PetscCall(DMPlexVecGetClosure(plex, section, locX, cell, NULL, &x));
35642f856554SMatthew G. Knepley     for (i = 0; i < totDim; ++i) ul[cind * totDim + i] = x[i];
35659566063dSJacob Faibussowitsch     PetscCall(DMPlexVecRestoreClosure(plex, section, locX, cell, NULL, &x));
35662f856554SMatthew G. Knepley     if (locX_t) {
35679566063dSJacob Faibussowitsch       PetscCall(DMPlexVecGetClosure(plex, section, locX_t, cell, NULL, &x_t));
35682f856554SMatthew G. Knepley       for (i = 0; i < totDim; ++i) ul_t[cind * totDim + i] = x_t[i];
35699566063dSJacob Faibussowitsch       PetscCall(DMPlexVecRestoreClosure(plex, section, locX_t, cell, NULL, &x_t));
35702f856554SMatthew G. Knepley     }
35712f856554SMatthew G. Knepley     if (locA) {
35722f856554SMatthew G. Knepley       PetscInt subcell;
35739566063dSJacob Faibussowitsch       PetscCall(DMGetEnclosurePoint(plexA, dm, encAux, cell, &subcell));
35749566063dSJacob Faibussowitsch       PetscCall(DMPlexVecGetClosure(plexA, sectionAux, locA, subcell, NULL, &x));
35752f856554SMatthew G. Knepley       for (i = 0; i < totDimAux; ++i) al[cind * totDimAux + i] = x[i];
35769566063dSJacob Faibussowitsch       PetscCall(DMPlexVecRestoreClosure(plexA, sectionAux, locA, subcell, NULL, &x));
35772f856554SMatthew G. Knepley     }
35782f856554SMatthew G. Knepley   }
35799566063dSJacob Faibussowitsch   PetscCall(DMDestroy(&plex));
35809566063dSJacob Faibussowitsch   if (locA) PetscCall(DMDestroy(&plexA));
35819566063dSJacob Faibussowitsch   PetscCall(ISRestorePointRange(cellIS, &cStart, &cEnd, &cells));
35823ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
35832f856554SMatthew G. Knepley }
35842f856554SMatthew G. Knepley 
35852f856554SMatthew G. Knepley /*@C
35862f856554SMatthew G. Knepley   DMPlexRestoreCellFields - Restore the field values values for a chunk of cells
35872f856554SMatthew G. Knepley 
35882f856554SMatthew G. Knepley   Input Parameters:
3589a1cb98faSBarry Smith + dm     - The `DM`
35902f856554SMatthew G. Knepley . cellIS - The cells to include
35912f856554SMatthew G. Knepley . locX   - A local vector with the solution fields
35922f856554SMatthew G. Knepley . locX_t - A local vector with solution field time derivatives, or NULL
35932f856554SMatthew G. Knepley - locA   - A local vector with auxiliary fields, or NULL
35942f856554SMatthew G. Knepley 
35952f856554SMatthew G. Knepley   Output Parameters:
35962f856554SMatthew G. Knepley + u   - The field coefficients
35972f856554SMatthew G. Knepley . u_t - The fields derivative coefficients
35982f856554SMatthew G. Knepley - a   - The auxiliary field coefficients
35992f856554SMatthew G. Knepley 
36002f856554SMatthew G. Knepley   Level: developer
36012f856554SMatthew G. Knepley 
36021cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexGetFaceFields()`
36032f856554SMatthew G. Knepley @*/
3604d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexRestoreCellFields(DM dm, IS cellIS, Vec locX, Vec locX_t, Vec locA, PetscScalar **u, PetscScalar **u_t, PetscScalar **a)
3605d71ae5a4SJacob Faibussowitsch {
36062f856554SMatthew G. Knepley   PetscFunctionBegin;
36079566063dSJacob Faibussowitsch   PetscCall(DMRestoreWorkArray(dm, 0, MPIU_SCALAR, u));
36089566063dSJacob Faibussowitsch   if (locX_t) PetscCall(DMRestoreWorkArray(dm, 0, MPIU_SCALAR, u_t));
36099566063dSJacob Faibussowitsch   if (locA) PetscCall(DMRestoreWorkArray(dm, 0, MPIU_SCALAR, a));
36103ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
36112f856554SMatthew G. Knepley }
36122f856554SMatthew G. Knepley 
3613a4e35b19SJacob Faibussowitsch static PetscErrorCode DMPlexGetHybridCellFields(DM dm, IS cellIS, Vec locX, Vec locX_t, Vec locA, PetscScalar **u, PetscScalar **u_t, PetscScalar **a)
3614d71ae5a4SJacob Faibussowitsch {
361507218a29SMatthew G. Knepley   DM              plex, plexA = NULL;
361607218a29SMatthew G. Knepley   DMEnclosureType encAux;
361707218a29SMatthew G. Knepley   PetscSection    section, sectionAux;
361807218a29SMatthew G. Knepley   PetscDS         ds, dsIn;
36196528b96dSMatthew G. Knepley   const PetscInt *cells;
362007218a29SMatthew G. Knepley   PetscInt        cStart, cEnd, numCells, c, totDim, totDimAux, Nf, f;
36216528b96dSMatthew G. Knepley 
36226528b96dSMatthew G. Knepley   PetscFunctionBegin;
362307218a29SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
362407218a29SMatthew G. Knepley   PetscValidHeaderSpecific(cellIS, IS_CLASSID, 2);
362507218a29SMatthew G. Knepley   PetscValidHeaderSpecific(locX, VEC_CLASSID, 3);
362607218a29SMatthew G. Knepley   if (locX_t) { PetscValidHeaderSpecific(locX_t, VEC_CLASSID, 4); }
362707218a29SMatthew G. Knepley   if (locA) { PetscValidHeaderSpecific(locA, VEC_CLASSID, 5); }
36284f572ea9SToby Isaac   PetscAssertPointer(u, 6);
36294f572ea9SToby Isaac   PetscAssertPointer(u_t, 7);
36304f572ea9SToby Isaac   PetscAssertPointer(a, 8);
363107218a29SMatthew G. Knepley   PetscCall(ISGetPointRange(cellIS, &cStart, &cEnd, &cells));
363207218a29SMatthew G. Knepley   numCells = cEnd - cStart;
363307218a29SMatthew G. Knepley   PetscCall(DMPlexConvertPlex(dm, &plex, PETSC_FALSE));
363407218a29SMatthew G. Knepley   PetscCall(DMGetLocalSection(dm, &section));
363507218a29SMatthew G. Knepley   PetscCall(DMGetCellDS(dm, cells ? cells[cStart] : cStart, &ds, &dsIn));
363607218a29SMatthew G. Knepley   PetscCall(PetscDSGetNumFields(dsIn, &Nf));
363707218a29SMatthew G. Knepley   PetscCall(PetscDSGetTotalDimension(dsIn, &totDim));
363807218a29SMatthew G. Knepley   if (locA) {
363907218a29SMatthew G. Knepley     DM      dmAux;
364007218a29SMatthew G. Knepley     PetscDS probAux;
364107218a29SMatthew G. Knepley 
364207218a29SMatthew G. Knepley     PetscCall(VecGetDM(locA, &dmAux));
364307218a29SMatthew G. Knepley     PetscCall(DMGetEnclosureRelation(dmAux, dm, &encAux));
364407218a29SMatthew G. Knepley     PetscCall(DMPlexConvertPlex(dmAux, &plexA, PETSC_FALSE));
364507218a29SMatthew G. Knepley     PetscCall(DMGetLocalSection(dmAux, &sectionAux));
364607218a29SMatthew G. Knepley     PetscCall(DMGetDS(dmAux, &probAux));
364707218a29SMatthew G. Knepley     PetscCall(PetscDSGetTotalDimension(probAux, &totDimAux));
364807218a29SMatthew G. Knepley   }
364907218a29SMatthew G. Knepley   PetscCall(DMGetWorkArray(dm, numCells * totDim, MPIU_SCALAR, u));
365007218a29SMatthew G. Knepley   if (locX_t) PetscCall(DMGetWorkArray(dm, numCells * totDim, MPIU_SCALAR, u_t));
365107218a29SMatthew G. Knepley   else {
365207218a29SMatthew G. Knepley     *u_t = NULL;
365307218a29SMatthew G. Knepley   }
365407218a29SMatthew G. Knepley   if (locA) PetscCall(DMGetWorkArray(dm, numCells * totDimAux, MPIU_SCALAR, a));
365507218a29SMatthew G. Knepley   else {
365607218a29SMatthew G. Knepley     *a = NULL;
365707218a29SMatthew G. Knepley   }
365807218a29SMatthew G. Knepley   // Loop over cohesive cells
365907218a29SMatthew G. Knepley   for (c = cStart; c < cEnd; ++c) {
366007218a29SMatthew G. Knepley     const PetscInt  cell = cells ? cells[c] : c;
366107218a29SMatthew G. Knepley     const PetscInt  cind = c - cStart;
366274a0c561SMatthew G. Knepley     PetscScalar    *xf = NULL, *xc = NULL, *x = NULL, *xf_t = NULL, *xc_t = NULL;
36638e3a54c0SPierre Jolivet     PetscScalar    *ul = &(*u)[cind * totDim], *ul_t = PetscSafePointerPlusOffset(*u_t, cind * totDim);
366407218a29SMatthew G. Knepley     const PetscInt *cone, *ornt;
366507218a29SMatthew G. Knepley     PetscInt        Nx = 0, Nxf, s;
366607218a29SMatthew G. Knepley 
366707218a29SMatthew G. Knepley     PetscCall(DMPlexGetCone(dm, cell, &cone));
366807218a29SMatthew G. Knepley     PetscCall(DMPlexGetConeOrientation(dm, cell, &ornt));
366907218a29SMatthew G. Knepley     // Put in cohesive unknowns
367007218a29SMatthew G. Knepley     PetscCall(DMPlexVecGetClosure(plex, section, locX, cell, &Nxf, &xf));
367174a0c561SMatthew G. Knepley     if (locX_t) PetscCall(DMPlexVecGetClosure(plex, section, locX_t, cell, NULL, &xf_t));
367207218a29SMatthew G. Knepley     for (f = 0; f < Nf; ++f) {
367307218a29SMatthew G. Knepley       PetscInt  fdofIn, foff, foffIn;
367407218a29SMatthew G. Knepley       PetscBool cohesive;
367507218a29SMatthew G. Knepley 
367607218a29SMatthew G. Knepley       PetscCall(PetscDSGetCohesive(dsIn, f, &cohesive));
367707218a29SMatthew G. Knepley       if (!cohesive) continue;
367807218a29SMatthew G. Knepley       PetscCall(PetscDSGetFieldSize(dsIn, f, &fdofIn));
367907218a29SMatthew G. Knepley       PetscCall(PetscDSGetFieldOffsetCohesive(ds, f, &foff));
368007218a29SMatthew G. Knepley       PetscCall(PetscDSGetFieldOffsetCohesive(dsIn, f, &foffIn));
368107218a29SMatthew G. Knepley       for (PetscInt i = 0; i < fdofIn; ++i) ul[foffIn + i] = xf[foff + i];
368274a0c561SMatthew G. Knepley       if (locX_t)
368374a0c561SMatthew G. Knepley         for (PetscInt i = 0; i < fdofIn; ++i) ul_t[foffIn + i] = xf_t[foff + i];
368407218a29SMatthew G. Knepley       Nx += fdofIn;
368507218a29SMatthew G. Knepley     }
368607218a29SMatthew G. Knepley     PetscCall(DMPlexVecRestoreClosure(plex, section, locX, cell, &Nxf, &xf));
368774a0c561SMatthew G. Knepley     if (locX_t) PetscCall(DMPlexVecRestoreClosure(plex, section, locX_t, cell, NULL, &xf_t));
368807218a29SMatthew G. Knepley     // Loop over sides of surface
368907218a29SMatthew G. Knepley     for (s = 0; s < 2; ++s) {
369007218a29SMatthew G. Knepley       const PetscInt *support;
369107218a29SMatthew G. Knepley       const PetscInt  face = cone[s];
369207218a29SMatthew G. Knepley       PetscInt        ssize, ncell, Nxc;
369307218a29SMatthew G. Knepley 
369407218a29SMatthew G. Knepley       // I don't think I need the face to have 0 orientation in the hybrid cell
369507218a29SMatthew G. Knepley       //PetscCheck(!ornt[s], PETSC_COMM_SELF, PETSC_ERR_SUP, "Face %" PetscInt_FMT " in hybrid cell %" PetscInt_FMT " has orientation %" PetscInt_FMT " != 0", face, cell, ornt[s]);
369607218a29SMatthew G. Knepley       PetscCall(DMPlexGetSupport(dm, face, &support));
369707218a29SMatthew G. Knepley       PetscCall(DMPlexGetSupportSize(dm, face, &ssize));
369807218a29SMatthew G. Knepley       if (support[0] == cell) ncell = support[1];
369907218a29SMatthew G. Knepley       else if (support[1] == cell) ncell = support[0];
370007218a29SMatthew G. Knepley       else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Face %" PetscInt_FMT " does not have cell %" PetscInt_FMT " in its support", face, cell);
370107218a29SMatthew G. Knepley       // Get closure of both face and cell, stick in cell for normal fields and face for cohesive fields
370207218a29SMatthew G. Knepley       PetscCall(DMPlexVecGetClosure(plex, section, locX, ncell, &Nxc, &xc));
370374a0c561SMatthew G. Knepley       if (locX_t) PetscCall(DMPlexVecGetClosure(plex, section, locX_t, ncell, NULL, &xc_t));
370407218a29SMatthew G. Knepley       for (f = 0; f < Nf; ++f) {
370507218a29SMatthew G. Knepley         PetscInt  fdofIn, foffIn;
370607218a29SMatthew G. Knepley         PetscBool cohesive;
370707218a29SMatthew G. Knepley 
370807218a29SMatthew G. Knepley         PetscCall(PetscDSGetCohesive(dsIn, f, &cohesive));
370907218a29SMatthew G. Knepley         if (cohesive) continue;
371007218a29SMatthew G. Knepley         PetscCall(PetscDSGetFieldSize(dsIn, f, &fdofIn));
371107218a29SMatthew G. Knepley         PetscCall(PetscDSGetFieldOffsetCohesive(dsIn, f, &foffIn));
371207218a29SMatthew G. Knepley         for (PetscInt i = 0; i < fdofIn; ++i) ul[foffIn + s * fdofIn + i] = xc[foffIn + i];
371374a0c561SMatthew G. Knepley         if (locX_t)
371474a0c561SMatthew G. Knepley           for (PetscInt i = 0; i < fdofIn; ++i) ul_t[foffIn + s * fdofIn + i] = xc_t[foffIn + i];
371507218a29SMatthew G. Knepley         Nx += fdofIn;
371607218a29SMatthew G. Knepley       }
371707218a29SMatthew G. Knepley       PetscCall(DMPlexVecRestoreClosure(plex, section, locX, ncell, &Nxc, &xc));
371874a0c561SMatthew G. Knepley       if (locX_t) PetscCall(DMPlexVecRestoreClosure(plex, section, locX_t, ncell, NULL, &xc_t));
371907218a29SMatthew G. Knepley     }
372007218a29SMatthew G. Knepley     PetscCheck(Nx == totDim, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "Closure size %" PetscInt_FMT " for cell %" PetscInt_FMT " does not match DS size %" PetscInt_FMT, Nx, cell, totDim);
372107218a29SMatthew G. Knepley 
372207218a29SMatthew G. Knepley     if (locA) {
372307218a29SMatthew G. Knepley       PetscScalar *al = &(*a)[cind * totDimAux];
372407218a29SMatthew G. Knepley       PetscInt     subcell;
372507218a29SMatthew G. Knepley 
372607218a29SMatthew G. Knepley       PetscCall(DMGetEnclosurePoint(plexA, dm, encAux, cell, &subcell));
372707218a29SMatthew G. Knepley       PetscCall(DMPlexVecGetClosure(plexA, sectionAux, locA, subcell, &Nx, &x));
372807218a29SMatthew G. Knepley       PetscCheck(Nx == totDimAux, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "Closure size %" PetscInt_FMT " for subcell %" PetscInt_FMT "does not match DS size %" PetscInt_FMT, Nx, subcell, totDimAux);
372907218a29SMatthew G. Knepley       for (PetscInt i = 0; i < totDimAux; ++i) al[i] = x[i];
373007218a29SMatthew G. Knepley       PetscCall(DMPlexVecRestoreClosure(plexA, sectionAux, locA, subcell, &Nx, &x));
373107218a29SMatthew G. Knepley     }
373207218a29SMatthew G. Knepley   }
373307218a29SMatthew G. Knepley   PetscCall(DMDestroy(&plex));
373407218a29SMatthew G. Knepley   PetscCall(DMDestroy(&plexA));
373507218a29SMatthew G. Knepley   PetscCall(ISRestorePointRange(cellIS, &cStart, &cEnd, &cells));
373607218a29SMatthew G. Knepley   PetscFunctionReturn(PETSC_SUCCESS);
373707218a29SMatthew G. Knepley }
373807218a29SMatthew G. Knepley 
373907218a29SMatthew G. Knepley /*
37403e2b0218SMatthew G. Knepley   DMPlexGetHybridFields - Get the field values for the negative side (s = 0) and positive side (s = 1) of the interface
374107218a29SMatthew G. Knepley 
374207218a29SMatthew G. Knepley   Input Parameters:
374307218a29SMatthew G. Knepley + dm      - The full domain DM
374407218a29SMatthew G. Knepley . dmX     - An array of DM for the field, say an auxiliary DM, indexed by s
374507218a29SMatthew G. Knepley . dsX     - An array of PetscDS for the field, indexed by s
374607218a29SMatthew G. Knepley . cellIS  - The interface cells for which we want values
374707218a29SMatthew G. Knepley . locX    - An array of local vectors with the field values, indexed by s
374807218a29SMatthew G. Knepley - useCell - Flag to have values come from neighboring cell rather than endcap face
374907218a29SMatthew G. Knepley 
375007218a29SMatthew G. Knepley   Output Parameter:
375107218a29SMatthew G. Knepley . x       - An array of field values, indexed by s
375207218a29SMatthew G. Knepley 
375307218a29SMatthew G. Knepley   Note:
375476fbde31SPierre Jolivet   The arrays in `x` will be allocated using `DMGetWorkArray()`, and must be returned using `DMPlexRestoreHybridFields()`.
375507218a29SMatthew G. Knepley 
375607218a29SMatthew G. Knepley   Level: advanced
375707218a29SMatthew G. Knepley 
375876fbde31SPierre Jolivet .seealso: `DMPlexRestoreHybridFields()`, `DMGetWorkArray()`
375907218a29SMatthew G. Knepley */
376007218a29SMatthew G. Knepley static PetscErrorCode DMPlexGetHybridFields(DM dm, DM dmX[], PetscDS dsX[], IS cellIS, Vec locX[], PetscBool useCell, PetscScalar *x[])
376107218a29SMatthew G. Knepley {
376207218a29SMatthew G. Knepley   DM              plexX[2];
376307218a29SMatthew G. Knepley   DMEnclosureType encX[2];
376407218a29SMatthew G. Knepley   PetscSection    sectionX[2];
376507218a29SMatthew G. Knepley   const PetscInt *cells;
376607218a29SMatthew G. Knepley   PetscInt        cStart, cEnd, numCells, c, s, totDimX[2];
376707218a29SMatthew G. Knepley 
376807218a29SMatthew G. Knepley   PetscFunctionBegin;
37694f572ea9SToby Isaac   PetscAssertPointer(locX, 5);
377007218a29SMatthew G. Knepley   if (!locX[0] || !locX[1]) PetscFunctionReturn(PETSC_SUCCESS);
37714f572ea9SToby Isaac   PetscAssertPointer(dmX, 2);
37724f572ea9SToby Isaac   PetscAssertPointer(dsX, 3);
377307218a29SMatthew G. Knepley   PetscValidHeaderSpecific(cellIS, IS_CLASSID, 4);
37744f572ea9SToby Isaac   PetscAssertPointer(x, 7);
37759566063dSJacob Faibussowitsch   PetscCall(ISGetPointRange(cellIS, &cStart, &cEnd, &cells));
37766528b96dSMatthew G. Knepley   numCells = cEnd - cStart;
3777148442b3SMatthew G. Knepley   for (s = 0; s < 2; ++s) {
377807218a29SMatthew G. Knepley     PetscValidHeaderSpecific(dmX[s], DM_CLASSID, 2);
377907218a29SMatthew G. Knepley     PetscValidHeaderSpecific(dsX[s], PETSCDS_CLASSID, 3);
378007218a29SMatthew G. Knepley     PetscValidHeaderSpecific(locX[s], VEC_CLASSID, 5);
378107218a29SMatthew G. Knepley     PetscCall(DMPlexConvertPlex(dmX[s], &plexX[s], PETSC_FALSE));
378207218a29SMatthew G. Knepley     PetscCall(DMGetEnclosureRelation(dmX[s], dm, &encX[s]));
378307218a29SMatthew G. Knepley     PetscCall(DMGetLocalSection(dmX[s], &sectionX[s]));
378407218a29SMatthew G. Knepley     PetscCall(PetscDSGetTotalDimension(dsX[s], &totDimX[s]));
378507218a29SMatthew G. Knepley     PetscCall(DMGetWorkArray(dmX[s], numCells * totDimX[s], MPIU_SCALAR, &x[s]));
378604c51a94SMatthew G. Knepley   }
3787148442b3SMatthew G. Knepley   for (c = cStart; c < cEnd; ++c) {
37886528b96dSMatthew G. Knepley     const PetscInt  cell = cells ? cells[c] : c;
37896528b96dSMatthew G. Knepley     const PetscInt  cind = c - cStart;
37906528b96dSMatthew G. Knepley     const PetscInt *cone, *ornt;
37916528b96dSMatthew G. Knepley 
37929566063dSJacob Faibussowitsch     PetscCall(DMPlexGetCone(dm, cell, &cone));
37939566063dSJacob Faibussowitsch     PetscCall(DMPlexGetConeOrientation(dm, cell, &ornt));
379407218a29SMatthew G. Knepley     //PetscCheck(!ornt[0], PETSC_COMM_SELF, PETSC_ERR_SUP, "Face %" PetscInt_FMT " in hybrid cell %" PetscInt_FMT " has orientation %" PetscInt_FMT " != 0", cone[0], cell, ornt[0]);
3795148442b3SMatthew G. Knepley     for (s = 0; s < 2; ++s) {
379607218a29SMatthew G. Knepley       const PetscInt tdX     = totDimX[s];
379707218a29SMatthew G. Knepley       PetscScalar   *closure = NULL, *xl = &x[s][cind * tdX];
379807218a29SMatthew G. Knepley       PetscInt       face = cone[s], point = face, subpoint, Nx, i;
379907218a29SMatthew G. Knepley 
380007218a29SMatthew G. Knepley       if (useCell) {
38015fedec97SMatthew G. Knepley         const PetscInt *support;
380207218a29SMatthew G. Knepley         PetscInt        ssize;
38036528b96dSMatthew G. Knepley 
380407218a29SMatthew G. Knepley         PetscCall(DMPlexGetSupport(dm, face, &support));
380507218a29SMatthew G. Knepley         PetscCall(DMPlexGetSupportSize(dm, face, &ssize));
380607218a29SMatthew G. Knepley         PetscCheck(ssize == 2, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Face %" PetscInt_FMT " from cell %" PetscInt_FMT " has support size %" PetscInt_FMT " != 2", face, cell, ssize);
380707218a29SMatthew G. Knepley         if (support[0] == cell) point = support[1];
380807218a29SMatthew G. Knepley         else if (support[1] == cell) point = support[0];
380907218a29SMatthew G. Knepley         else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Face %" PetscInt_FMT " does not have cell %" PetscInt_FMT " in its support", face, cell);
381007218a29SMatthew G. Knepley       }
381107218a29SMatthew G. Knepley       PetscCall(DMGetEnclosurePoint(plexX[s], dm, encX[s], point, &subpoint));
3812e8e188d2SZach Atkins       PetscCall(DMPlexVecGetOrientedClosure_Internal(plexX[s], sectionX[s], PETSC_FALSE, locX[s], subpoint, ornt[s], &Nx, &closure));
381307218a29SMatthew G. Knepley       PetscCheck(Nx == tdX, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "Closure size %" PetscInt_FMT " for subpoint %" PetscInt_FMT " does not match DS size %" PetscInt_FMT, Nx, subpoint, tdX);
381407218a29SMatthew G. Knepley       for (i = 0; i < Nx; ++i) xl[i] = closure[i];
381507218a29SMatthew G. Knepley       PetscCall(DMPlexVecRestoreClosure(plexX[s], sectionX[s], locX[s], subpoint, &Nx, &closure));
38166528b96dSMatthew G. Knepley     }
38176528b96dSMatthew G. Knepley   }
381807218a29SMatthew G. Knepley   for (s = 0; s < 2; ++s) PetscCall(DMDestroy(&plexX[s]));
38199566063dSJacob Faibussowitsch   PetscCall(ISRestorePointRange(cellIS, &cStart, &cEnd, &cells));
38203ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
38216528b96dSMatthew G. Knepley }
38226528b96dSMatthew G. Knepley 
382307218a29SMatthew G. Knepley static PetscErrorCode DMPlexRestoreHybridFields(DM dm, DM dmX[], PetscDS dsX[], IS cellIS, Vec locX[], PetscBool useCell, PetscScalar *x[])
3824d71ae5a4SJacob Faibussowitsch {
38256528b96dSMatthew G. Knepley   PetscFunctionBegin;
382607218a29SMatthew G. Knepley   if (!locX[0] || !locX[1]) PetscFunctionReturn(PETSC_SUCCESS);
382707218a29SMatthew G. Knepley   PetscCall(DMRestoreWorkArray(dmX[0], 0, MPIU_SCALAR, &x[0]));
382807218a29SMatthew G. Knepley   PetscCall(DMRestoreWorkArray(dmX[1], 0, MPIU_SCALAR, &x[1]));
38293ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
38306528b96dSMatthew G. Knepley }
38316528b96dSMatthew G. Knepley 
38322f856554SMatthew G. Knepley /*@C
38332f856554SMatthew G. Knepley   DMPlexGetFaceFields - Retrieve the field values values for a chunk of faces
38342f856554SMatthew G. Knepley 
38352f856554SMatthew G. Knepley   Input Parameters:
3836a1cb98faSBarry Smith + dm           - The `DM`
38372f856554SMatthew G. Knepley . fStart       - The first face to include
38382f856554SMatthew G. Knepley . fEnd         - The first face to exclude
38392f856554SMatthew G. Knepley . locX         - A local vector with the solution fields
38402f856554SMatthew G. Knepley . locX_t       - A local vector with solution field time derivatives, or NULL
38412f856554SMatthew G. Knepley . faceGeometry - A local vector with face geometry
38422f856554SMatthew G. Knepley . cellGeometry - A local vector with cell geometry
384360225df5SJacob Faibussowitsch - locGrad      - A local vector with field gradients, or NULL
38442f856554SMatthew G. Knepley 
38452f856554SMatthew G. Knepley   Output Parameters:
38462f856554SMatthew G. Knepley + Nface - The number of faces with field values
38472f856554SMatthew G. Knepley . uL    - The field values at the left side of the face
38482f856554SMatthew G. Knepley - uR    - The field values at the right side of the face
38492f856554SMatthew G. Knepley 
38502f856554SMatthew G. Knepley   Level: developer
38512f856554SMatthew G. Knepley 
38521cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexGetCellFields()`
38532f856554SMatthew G. Knepley @*/
3854d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexGetFaceFields(DM dm, PetscInt fStart, PetscInt fEnd, Vec locX, Vec locX_t, Vec faceGeometry, Vec cellGeometry, Vec locGrad, PetscInt *Nface, PetscScalar **uL, PetscScalar **uR)
3855d71ae5a4SJacob Faibussowitsch {
38562f856554SMatthew G. Knepley   DM                 dmFace, dmCell, dmGrad = NULL;
38572f856554SMatthew G. Knepley   PetscSection       section;
38582f856554SMatthew G. Knepley   PetscDS            prob;
38592f856554SMatthew G. Knepley   DMLabel            ghostLabel;
38602f856554SMatthew G. Knepley   const PetscScalar *facegeom, *cellgeom, *x, *lgrad;
38612f856554SMatthew G. Knepley   PetscBool         *isFE;
38622f856554SMatthew G. Knepley   PetscInt           dim, Nf, f, Nc, numFaces = fEnd - fStart, iface, face;
38632f856554SMatthew G. Knepley 
38642f856554SMatthew G. Knepley   PetscFunctionBegin;
38652f856554SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
38662f856554SMatthew G. Knepley   PetscValidHeaderSpecific(locX, VEC_CLASSID, 4);
3867ad540459SPierre Jolivet   if (locX_t) PetscValidHeaderSpecific(locX_t, VEC_CLASSID, 5);
38682f856554SMatthew G. Knepley   PetscValidHeaderSpecific(faceGeometry, VEC_CLASSID, 6);
38692f856554SMatthew G. Knepley   PetscValidHeaderSpecific(cellGeometry, VEC_CLASSID, 7);
3870ad540459SPierre Jolivet   if (locGrad) PetscValidHeaderSpecific(locGrad, VEC_CLASSID, 8);
38714f572ea9SToby Isaac   PetscAssertPointer(uL, 10);
38724f572ea9SToby Isaac   PetscAssertPointer(uR, 11);
38739566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dm, &dim));
38749566063dSJacob Faibussowitsch   PetscCall(DMGetDS(dm, &prob));
38759566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dm, &section));
38769566063dSJacob Faibussowitsch   PetscCall(PetscDSGetNumFields(prob, &Nf));
38779566063dSJacob Faibussowitsch   PetscCall(PetscDSGetTotalComponents(prob, &Nc));
38789566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(Nf, &isFE));
38792f856554SMatthew G. Knepley   for (f = 0; f < Nf; ++f) {
38802f856554SMatthew G. Knepley     PetscObject  obj;
38812f856554SMatthew G. Knepley     PetscClassId id;
38822f856554SMatthew G. Knepley 
38839566063dSJacob Faibussowitsch     PetscCall(PetscDSGetDiscretization(prob, f, &obj));
38849566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetClassId(obj, &id));
38859371c9d4SSatish Balay     if (id == PETSCFE_CLASSID) {
38869371c9d4SSatish Balay       isFE[f] = PETSC_TRUE;
38879371c9d4SSatish Balay     } else if (id == PETSCFV_CLASSID) {
38889371c9d4SSatish Balay       isFE[f] = PETSC_FALSE;
38899371c9d4SSatish Balay     } else {
38909371c9d4SSatish Balay       isFE[f] = PETSC_FALSE;
38919371c9d4SSatish Balay     }
38922f856554SMatthew G. Knepley   }
38939566063dSJacob Faibussowitsch   PetscCall(DMGetLabel(dm, "ghost", &ghostLabel));
38949566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(locX, &x));
38959566063dSJacob Faibussowitsch   PetscCall(VecGetDM(faceGeometry, &dmFace));
38969566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(faceGeometry, &facegeom));
38979566063dSJacob Faibussowitsch   PetscCall(VecGetDM(cellGeometry, &dmCell));
38989566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(cellGeometry, &cellgeom));
38992f856554SMatthew G. Knepley   if (locGrad) {
39009566063dSJacob Faibussowitsch     PetscCall(VecGetDM(locGrad, &dmGrad));
39019566063dSJacob Faibussowitsch     PetscCall(VecGetArrayRead(locGrad, &lgrad));
39022f856554SMatthew G. Knepley   }
39039566063dSJacob Faibussowitsch   PetscCall(DMGetWorkArray(dm, numFaces * Nc, MPIU_SCALAR, uL));
39049566063dSJacob Faibussowitsch   PetscCall(DMGetWorkArray(dm, numFaces * Nc, MPIU_SCALAR, uR));
39052f856554SMatthew G. Knepley   /* Right now just eat the extra work for FE (could make a cell loop) */
39062f856554SMatthew G. Knepley   for (face = fStart, iface = 0; face < fEnd; ++face) {
39072f856554SMatthew G. Knepley     const PetscInt  *cells;
39082f856554SMatthew G. Knepley     PetscFVFaceGeom *fg;
39092f856554SMatthew G. Knepley     PetscFVCellGeom *cgL, *cgR;
39102f856554SMatthew G. Knepley     PetscScalar     *xL, *xR, *gL, *gR;
39112f856554SMatthew G. Knepley     PetscScalar     *uLl = *uL, *uRl = *uR;
39122f856554SMatthew G. Knepley     PetscInt         ghost, nsupp, nchild;
39132f856554SMatthew G. Knepley 
39149566063dSJacob Faibussowitsch     PetscCall(DMLabelGetValue(ghostLabel, face, &ghost));
39159566063dSJacob Faibussowitsch     PetscCall(DMPlexGetSupportSize(dm, face, &nsupp));
39169566063dSJacob Faibussowitsch     PetscCall(DMPlexGetTreeChildren(dm, face, &nchild, NULL));
39172f856554SMatthew G. Knepley     if (ghost >= 0 || nsupp > 2 || nchild > 0) continue;
39189566063dSJacob Faibussowitsch     PetscCall(DMPlexPointLocalRead(dmFace, face, facegeom, &fg));
39199566063dSJacob Faibussowitsch     PetscCall(DMPlexGetSupport(dm, face, &cells));
39209566063dSJacob Faibussowitsch     PetscCall(DMPlexPointLocalRead(dmCell, cells[0], cellgeom, &cgL));
39219566063dSJacob Faibussowitsch     PetscCall(DMPlexPointLocalRead(dmCell, cells[1], cellgeom, &cgR));
39222f856554SMatthew G. Knepley     for (f = 0; f < Nf; ++f) {
39232f856554SMatthew G. Knepley       PetscInt off;
39242f856554SMatthew G. Knepley 
39259566063dSJacob Faibussowitsch       PetscCall(PetscDSGetComponentOffset(prob, f, &off));
39262f856554SMatthew G. Knepley       if (isFE[f]) {
39272f856554SMatthew G. Knepley         const PetscInt *cone;
39282f856554SMatthew G. Knepley         PetscInt        comp, coneSizeL, coneSizeR, faceLocL, faceLocR, ldof, rdof, d;
39292f856554SMatthew G. Knepley 
39302f856554SMatthew G. Knepley         xL = xR = NULL;
39319566063dSJacob Faibussowitsch         PetscCall(PetscSectionGetFieldComponents(section, f, &comp));
39329566063dSJacob Faibussowitsch         PetscCall(DMPlexVecGetClosure(dm, section, locX, cells[0], &ldof, (PetscScalar **)&xL));
39339566063dSJacob Faibussowitsch         PetscCall(DMPlexVecGetClosure(dm, section, locX, cells[1], &rdof, (PetscScalar **)&xR));
39349566063dSJacob Faibussowitsch         PetscCall(DMPlexGetCone(dm, cells[0], &cone));
39359566063dSJacob Faibussowitsch         PetscCall(DMPlexGetConeSize(dm, cells[0], &coneSizeL));
39369371c9d4SSatish Balay         for (faceLocL = 0; faceLocL < coneSizeL; ++faceLocL)
39379371c9d4SSatish Balay           if (cone[faceLocL] == face) break;
39389566063dSJacob Faibussowitsch         PetscCall(DMPlexGetCone(dm, cells[1], &cone));
39399566063dSJacob Faibussowitsch         PetscCall(DMPlexGetConeSize(dm, cells[1], &coneSizeR));
39409371c9d4SSatish Balay         for (faceLocR = 0; faceLocR < coneSizeR; ++faceLocR)
39419371c9d4SSatish Balay           if (cone[faceLocR] == face) break;
39421dca8a05SBarry Smith         PetscCheck(faceLocL != coneSizeL || faceLocR != coneSizeR, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Could not find face %" PetscInt_FMT " in cone of cell %" PetscInt_FMT " or cell %" PetscInt_FMT, face, cells[0], cells[1]);
39432f856554SMatthew G. Knepley         /* Check that FEM field has values in the right cell (sometimes its an FV ghost cell) */
39442f856554SMatthew G. Knepley         /* TODO: this is a hack that might not be right for nonconforming */
39452f856554SMatthew G. Knepley         if (faceLocL < coneSizeL) {
39469566063dSJacob Faibussowitsch           PetscCall(PetscFEEvaluateFaceFields_Internal(prob, f, faceLocL, xL, &uLl[iface * Nc + off]));
39479566063dSJacob Faibussowitsch           if (rdof == ldof && faceLocR < coneSizeR) PetscCall(PetscFEEvaluateFaceFields_Internal(prob, f, faceLocR, xR, &uRl[iface * Nc + off]));
39482f856554SMatthew G. Knepley           else {
39499371c9d4SSatish Balay             for (d = 0; d < comp; ++d) uRl[iface * Nc + off + d] = uLl[iface * Nc + off + d];
39509371c9d4SSatish Balay           }
39519371c9d4SSatish Balay         } else {
39529566063dSJacob Faibussowitsch           PetscCall(PetscFEEvaluateFaceFields_Internal(prob, f, faceLocR, xR, &uRl[iface * Nc + off]));
39539566063dSJacob Faibussowitsch           PetscCall(PetscSectionGetFieldComponents(section, f, &comp));
39542f856554SMatthew G. Knepley           for (d = 0; d < comp; ++d) uLl[iface * Nc + off + d] = uRl[iface * Nc + off + d];
39552f856554SMatthew G. Knepley         }
39569566063dSJacob Faibussowitsch         PetscCall(DMPlexVecRestoreClosure(dm, section, locX, cells[0], &ldof, (PetscScalar **)&xL));
39579566063dSJacob Faibussowitsch         PetscCall(DMPlexVecRestoreClosure(dm, section, locX, cells[1], &rdof, (PetscScalar **)&xR));
39582f856554SMatthew G. Knepley       } else {
39592f856554SMatthew G. Knepley         PetscFV  fv;
39602f856554SMatthew G. Knepley         PetscInt numComp, c;
39612f856554SMatthew G. Knepley 
39629566063dSJacob Faibussowitsch         PetscCall(PetscDSGetDiscretization(prob, f, (PetscObject *)&fv));
39639566063dSJacob Faibussowitsch         PetscCall(PetscFVGetNumComponents(fv, &numComp));
39649566063dSJacob Faibussowitsch         PetscCall(DMPlexPointLocalFieldRead(dm, cells[0], f, x, &xL));
39659566063dSJacob Faibussowitsch         PetscCall(DMPlexPointLocalFieldRead(dm, cells[1], f, x, &xR));
39662f856554SMatthew G. Knepley         if (dmGrad) {
39672f856554SMatthew G. Knepley           PetscReal dxL[3], dxR[3];
39682f856554SMatthew G. Knepley 
39699566063dSJacob Faibussowitsch           PetscCall(DMPlexPointLocalRead(dmGrad, cells[0], lgrad, &gL));
39709566063dSJacob Faibussowitsch           PetscCall(DMPlexPointLocalRead(dmGrad, cells[1], lgrad, &gR));
39712f856554SMatthew G. Knepley           DMPlex_WaxpyD_Internal(dim, -1, cgL->centroid, fg->centroid, dxL);
39722f856554SMatthew G. Knepley           DMPlex_WaxpyD_Internal(dim, -1, cgR->centroid, fg->centroid, dxR);
39732f856554SMatthew G. Knepley           for (c = 0; c < numComp; ++c) {
39742f856554SMatthew G. Knepley             uLl[iface * Nc + off + c] = xL[c] + DMPlex_DotD_Internal(dim, &gL[c * dim], dxL);
39752f856554SMatthew G. Knepley             uRl[iface * Nc + off + c] = xR[c] + DMPlex_DotD_Internal(dim, &gR[c * dim], dxR);
39762f856554SMatthew G. Knepley           }
39772f856554SMatthew G. Knepley         } else {
39782f856554SMatthew G. Knepley           for (c = 0; c < numComp; ++c) {
39792f856554SMatthew G. Knepley             uLl[iface * Nc + off + c] = xL[c];
39802f856554SMatthew G. Knepley             uRl[iface * Nc + off + c] = xR[c];
39812f856554SMatthew G. Knepley           }
39822f856554SMatthew G. Knepley         }
39832f856554SMatthew G. Knepley       }
39842f856554SMatthew G. Knepley     }
39852f856554SMatthew G. Knepley     ++iface;
39862f856554SMatthew G. Knepley   }
39872f856554SMatthew G. Knepley   *Nface = iface;
39889566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(locX, &x));
39899566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(faceGeometry, &facegeom));
39909566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(cellGeometry, &cellgeom));
399148a46eb9SPierre Jolivet   if (locGrad) PetscCall(VecRestoreArrayRead(locGrad, &lgrad));
39929566063dSJacob Faibussowitsch   PetscCall(PetscFree(isFE));
39933ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
39942f856554SMatthew G. Knepley }
39952f856554SMatthew G. Knepley 
39962f856554SMatthew G. Knepley /*@C
39972f856554SMatthew G. Knepley   DMPlexRestoreFaceFields - Restore the field values values for a chunk of faces
39982f856554SMatthew G. Knepley 
39992f856554SMatthew G. Knepley   Input Parameters:
4000a1cb98faSBarry Smith + dm           - The `DM`
40012f856554SMatthew G. Knepley . fStart       - The first face to include
40022f856554SMatthew G. Knepley . fEnd         - The first face to exclude
40032f856554SMatthew G. Knepley . locX         - A local vector with the solution fields
40042f856554SMatthew G. Knepley . locX_t       - A local vector with solution field time derivatives, or NULL
40052f856554SMatthew G. Knepley . faceGeometry - A local vector with face geometry
40062f856554SMatthew G. Knepley . cellGeometry - A local vector with cell geometry
400760225df5SJacob Faibussowitsch - locGrad      - A local vector with field gradients, or NULL
40082f856554SMatthew G. Knepley 
40092f856554SMatthew G. Knepley   Output Parameters:
40102f856554SMatthew G. Knepley + Nface - The number of faces with field values
40112f856554SMatthew G. Knepley . uL    - The field values at the left side of the face
40122f856554SMatthew G. Knepley - uR    - The field values at the right side of the face
40132f856554SMatthew G. Knepley 
40142f856554SMatthew G. Knepley   Level: developer
40152f856554SMatthew G. Knepley 
40161cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexGetFaceFields()`
40172f856554SMatthew G. Knepley @*/
4018d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexRestoreFaceFields(DM dm, PetscInt fStart, PetscInt fEnd, Vec locX, Vec locX_t, Vec faceGeometry, Vec cellGeometry, Vec locGrad, PetscInt *Nface, PetscScalar **uL, PetscScalar **uR)
4019d71ae5a4SJacob Faibussowitsch {
40202f856554SMatthew G. Knepley   PetscFunctionBegin;
40219566063dSJacob Faibussowitsch   PetscCall(DMRestoreWorkArray(dm, 0, MPIU_SCALAR, uL));
40229566063dSJacob Faibussowitsch   PetscCall(DMRestoreWorkArray(dm, 0, MPIU_SCALAR, uR));
40233ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
40242f856554SMatthew G. Knepley }
40252f856554SMatthew G. Knepley 
40262f856554SMatthew G. Knepley /*@C
40272f856554SMatthew G. Knepley   DMPlexGetFaceGeometry - Retrieve the geometric values for a chunk of faces
40282f856554SMatthew G. Knepley 
40292f856554SMatthew G. Knepley   Input Parameters:
4030a1cb98faSBarry Smith + dm           - The `DM`
40312f856554SMatthew G. Knepley . fStart       - The first face to include
40322f856554SMatthew G. Knepley . fEnd         - The first face to exclude
40332f856554SMatthew G. Knepley . faceGeometry - A local vector with face geometry
40342f856554SMatthew G. Knepley - cellGeometry - A local vector with cell geometry
40352f856554SMatthew G. Knepley 
40362f856554SMatthew G. Knepley   Output Parameters:
40372f856554SMatthew G. Knepley + Nface - The number of faces with field values
40382f856554SMatthew G. Knepley . fgeom - The extract the face centroid and normal
40392f856554SMatthew G. Knepley - vol   - The cell volume
40402f856554SMatthew G. Knepley 
40412f856554SMatthew G. Knepley   Level: developer
40422f856554SMatthew G. Knepley 
40431cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexGetCellFields()`
40442f856554SMatthew G. Knepley @*/
4045d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexGetFaceGeometry(DM dm, PetscInt fStart, PetscInt fEnd, Vec faceGeometry, Vec cellGeometry, PetscInt *Nface, PetscFVFaceGeom **fgeom, PetscReal **vol)
4046d71ae5a4SJacob Faibussowitsch {
40472f856554SMatthew G. Knepley   DM                 dmFace, dmCell;
40482f856554SMatthew G. Knepley   DMLabel            ghostLabel;
40492f856554SMatthew G. Knepley   const PetscScalar *facegeom, *cellgeom;
40502f856554SMatthew G. Knepley   PetscInt           dim, numFaces = fEnd - fStart, iface, face;
40512f856554SMatthew G. Knepley 
40522f856554SMatthew G. Knepley   PetscFunctionBegin;
40532f856554SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
40542f856554SMatthew G. Knepley   PetscValidHeaderSpecific(faceGeometry, VEC_CLASSID, 4);
40552f856554SMatthew G. Knepley   PetscValidHeaderSpecific(cellGeometry, VEC_CLASSID, 5);
40564f572ea9SToby Isaac   PetscAssertPointer(fgeom, 7);
40574f572ea9SToby Isaac   PetscAssertPointer(vol, 8);
40589566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dm, &dim));
40599566063dSJacob Faibussowitsch   PetscCall(DMGetLabel(dm, "ghost", &ghostLabel));
40609566063dSJacob Faibussowitsch   PetscCall(VecGetDM(faceGeometry, &dmFace));
40619566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(faceGeometry, &facegeom));
40629566063dSJacob Faibussowitsch   PetscCall(VecGetDM(cellGeometry, &dmCell));
40639566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(cellGeometry, &cellgeom));
40649566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(numFaces, fgeom));
40659566063dSJacob Faibussowitsch   PetscCall(DMGetWorkArray(dm, numFaces * 2, MPIU_SCALAR, vol));
40662f856554SMatthew G. Knepley   for (face = fStart, iface = 0; face < fEnd; ++face) {
40672f856554SMatthew G. Knepley     const PetscInt  *cells;
40682f856554SMatthew G. Knepley     PetscFVFaceGeom *fg;
40692f856554SMatthew G. Knepley     PetscFVCellGeom *cgL, *cgR;
40702f856554SMatthew G. Knepley     PetscFVFaceGeom *fgeoml = *fgeom;
40712f856554SMatthew G. Knepley     PetscReal       *voll   = *vol;
40722f856554SMatthew G. Knepley     PetscInt         ghost, d, nchild, nsupp;
40732f856554SMatthew G. Knepley 
40749566063dSJacob Faibussowitsch     PetscCall(DMLabelGetValue(ghostLabel, face, &ghost));
40759566063dSJacob Faibussowitsch     PetscCall(DMPlexGetSupportSize(dm, face, &nsupp));
40769566063dSJacob Faibussowitsch     PetscCall(DMPlexGetTreeChildren(dm, face, &nchild, NULL));
40772f856554SMatthew G. Knepley     if (ghost >= 0 || nsupp > 2 || nchild > 0) continue;
40789566063dSJacob Faibussowitsch     PetscCall(DMPlexPointLocalRead(dmFace, face, facegeom, &fg));
40799566063dSJacob Faibussowitsch     PetscCall(DMPlexGetSupport(dm, face, &cells));
40809566063dSJacob Faibussowitsch     PetscCall(DMPlexPointLocalRead(dmCell, cells[0], cellgeom, &cgL));
40819566063dSJacob Faibussowitsch     PetscCall(DMPlexPointLocalRead(dmCell, cells[1], cellgeom, &cgR));
40822f856554SMatthew G. Knepley     for (d = 0; d < dim; ++d) {
40832f856554SMatthew G. Knepley       fgeoml[iface].centroid[d] = fg->centroid[d];
40842f856554SMatthew G. Knepley       fgeoml[iface].normal[d]   = fg->normal[d];
40852f856554SMatthew G. Knepley     }
40862f856554SMatthew G. Knepley     voll[iface * 2 + 0] = cgL->volume;
40872f856554SMatthew G. Knepley     voll[iface * 2 + 1] = cgR->volume;
40882f856554SMatthew G. Knepley     ++iface;
40892f856554SMatthew G. Knepley   }
40902f856554SMatthew G. Knepley   *Nface = iface;
40919566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(faceGeometry, &facegeom));
40929566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(cellGeometry, &cellgeom));
40933ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
40942f856554SMatthew G. Knepley }
40952f856554SMatthew G. Knepley 
40962f856554SMatthew G. Knepley /*@C
40972f856554SMatthew G. Knepley   DMPlexRestoreFaceGeometry - Restore the field values values for a chunk of faces
40982f856554SMatthew G. Knepley 
40992f856554SMatthew G. Knepley   Input Parameters:
4100a1cb98faSBarry Smith + dm           - The `DM`
41012f856554SMatthew G. Knepley . fStart       - The first face to include
41022f856554SMatthew G. Knepley . fEnd         - The first face to exclude
41032f856554SMatthew G. Knepley . faceGeometry - A local vector with face geometry
41042f856554SMatthew G. Knepley - cellGeometry - A local vector with cell geometry
41052f856554SMatthew G. Knepley 
41062f856554SMatthew G. Knepley   Output Parameters:
41072f856554SMatthew G. Knepley + Nface - The number of faces with field values
41082f856554SMatthew G. Knepley . fgeom - The extract the face centroid and normal
41092f856554SMatthew G. Knepley - vol   - The cell volume
41102f856554SMatthew G. Knepley 
41112f856554SMatthew G. Knepley   Level: developer
41122f856554SMatthew G. Knepley 
41131cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexGetFaceFields()`
41142f856554SMatthew G. Knepley @*/
4115d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexRestoreFaceGeometry(DM dm, PetscInt fStart, PetscInt fEnd, Vec faceGeometry, Vec cellGeometry, PetscInt *Nface, PetscFVFaceGeom **fgeom, PetscReal **vol)
4116d71ae5a4SJacob Faibussowitsch {
41172f856554SMatthew G. Knepley   PetscFunctionBegin;
41189566063dSJacob Faibussowitsch   PetscCall(PetscFree(*fgeom));
41199566063dSJacob Faibussowitsch   PetscCall(DMRestoreWorkArray(dm, 0, MPIU_REAL, vol));
41203ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
41212f856554SMatthew G. Knepley }
41222f856554SMatthew G. Knepley 
4123d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSNESGetFEGeom(DMField coordField, IS pointIS, PetscQuadrature quad, PetscBool faceData, PetscFEGeom **geom)
4124d71ae5a4SJacob Faibussowitsch {
4125a1cf66bbSMatthew G. Knepley   char           composeStr[33] = {0};
4126a1cf66bbSMatthew G. Knepley   PetscObjectId  id;
4127a1cf66bbSMatthew G. Knepley   PetscContainer container;
4128a1cf66bbSMatthew G. Knepley 
4129a1cf66bbSMatthew G. Knepley   PetscFunctionBegin;
41309566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetId((PetscObject)quad, &id));
413163a3b9bcSJacob Faibussowitsch   PetscCall(PetscSNPrintf(composeStr, 32, "DMSNESGetFEGeom_%" PetscInt64_FMT "\n", id));
41329566063dSJacob Faibussowitsch   PetscCall(PetscObjectQuery((PetscObject)pointIS, composeStr, (PetscObject *)&container));
4133a1cf66bbSMatthew G. Knepley   if (container) {
41349566063dSJacob Faibussowitsch     PetscCall(PetscContainerGetPointer(container, (void **)geom));
4135a1cf66bbSMatthew G. Knepley   } else {
41369566063dSJacob Faibussowitsch     PetscCall(DMFieldCreateFEGeom(coordField, pointIS, quad, faceData, geom));
41379566063dSJacob Faibussowitsch     PetscCall(PetscContainerCreate(PETSC_COMM_SELF, &container));
41389566063dSJacob Faibussowitsch     PetscCall(PetscContainerSetPointer(container, (void *)*geom));
41399566063dSJacob Faibussowitsch     PetscCall(PetscContainerSetUserDestroy(container, PetscContainerUserDestroy_PetscFEGeom));
41409566063dSJacob Faibussowitsch     PetscCall(PetscObjectCompose((PetscObject)pointIS, composeStr, (PetscObject)container));
41419566063dSJacob Faibussowitsch     PetscCall(PetscContainerDestroy(&container));
4142a1cf66bbSMatthew G. Knepley   }
41433ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
4144a1cf66bbSMatthew G. Knepley }
4145a1cf66bbSMatthew G. Knepley 
4146d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSNESRestoreFEGeom(DMField coordField, IS pointIS, PetscQuadrature quad, PetscBool faceData, PetscFEGeom **geom)
4147d71ae5a4SJacob Faibussowitsch {
4148a1cf66bbSMatthew G. Knepley   PetscFunctionBegin;
4149a1cf66bbSMatthew G. Knepley   *geom = NULL;
41503ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
4151a1cf66bbSMatthew G. Knepley }
4152a1cf66bbSMatthew G. Knepley 
4153d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeResidual_Patch_Internal(DM dm, PetscSection section, IS cellIS, PetscReal t, Vec locX, Vec locX_t, Vec locF, void *user)
4154d71ae5a4SJacob Faibussowitsch {
415592d50984SMatthew G. Knepley   DM_Plex        *mesh       = (DM_Plex *)dm->data;
415692d50984SMatthew G. Knepley   const char     *name       = "Residual";
415792d50984SMatthew G. Knepley   DM              dmAux      = NULL;
415892d50984SMatthew G. Knepley   DMLabel         ghostLabel = NULL;
415992d50984SMatthew G. Knepley   PetscDS         prob       = NULL;
416092d50984SMatthew G. Knepley   PetscDS         probAux    = NULL;
416192d50984SMatthew G. Knepley   PetscBool       useFEM     = PETSC_FALSE;
416292d50984SMatthew G. Knepley   PetscBool       isImplicit = (locX_t || t == PETSC_MIN_REAL) ? PETSC_TRUE : PETSC_FALSE;
416392d50984SMatthew G. Knepley   DMField         coordField = NULL;
4164c0006e53SPatrick Farrell   Vec             locA;
4165c0006e53SPatrick Farrell   PetscScalar    *u = NULL, *u_t, *a, *uL = NULL, *uR = NULL;
416692d50984SMatthew G. Knepley   IS              chunkIS;
416792d50984SMatthew G. Knepley   const PetscInt *cells;
416892d50984SMatthew G. Knepley   PetscInt        cStart, cEnd, numCells;
4169364207b6SKarl Rupp   PetscInt        Nf, f, totDim, totDimAux, numChunks, cellChunkSize, chunk, fStart, fEnd;
417092d50984SMatthew G. Knepley   PetscInt        maxDegree = PETSC_MAX_INT;
417106ad1575SMatthew G. Knepley   PetscFormKey    key;
417292d50984SMatthew G. Knepley   PetscQuadrature affineQuad = NULL, *quads = NULL;
417392d50984SMatthew G. Knepley   PetscFEGeom    *affineGeom = NULL, **geoms = NULL;
417492d50984SMatthew G. Knepley 
417592d50984SMatthew G. Knepley   PetscFunctionBegin;
41769566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(DMPLEX_ResidualFEM, dm, 0, 0, 0));
417792d50984SMatthew G. Knepley   /* FEM+FVM */
417892d50984SMatthew G. Knepley   /* 1: Get sizes from dm and dmAux */
41799566063dSJacob Faibussowitsch   PetscCall(DMGetLabel(dm, "ghost", &ghostLabel));
41809566063dSJacob Faibussowitsch   PetscCall(DMGetDS(dm, &prob));
41819566063dSJacob Faibussowitsch   PetscCall(PetscDSGetNumFields(prob, &Nf));
41829566063dSJacob Faibussowitsch   PetscCall(PetscDSGetTotalDimension(prob, &totDim));
41839566063dSJacob Faibussowitsch   PetscCall(DMGetAuxiliaryVec(dm, NULL, 0, 0, &locA));
418492d50984SMatthew G. Knepley   if (locA) {
41859566063dSJacob Faibussowitsch     PetscCall(VecGetDM(locA, &dmAux));
41869566063dSJacob Faibussowitsch     PetscCall(DMGetDS(dmAux, &probAux));
41879566063dSJacob Faibussowitsch     PetscCall(PetscDSGetTotalDimension(probAux, &totDimAux));
418892d50984SMatthew G. Knepley   }
418992d50984SMatthew G. Knepley   /* 2: Get geometric data */
419092d50984SMatthew G. Knepley   for (f = 0; f < Nf; ++f) {
419192d50984SMatthew G. Knepley     PetscObject  obj;
419292d50984SMatthew G. Knepley     PetscClassId id;
419392d50984SMatthew G. Knepley     PetscBool    fimp;
419492d50984SMatthew G. Knepley 
41959566063dSJacob Faibussowitsch     PetscCall(PetscDSGetImplicit(prob, f, &fimp));
419692d50984SMatthew G. Knepley     if (isImplicit != fimp) continue;
41979566063dSJacob Faibussowitsch     PetscCall(PetscDSGetDiscretization(prob, f, &obj));
41989566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetClassId(obj, &id));
4199ad540459SPierre Jolivet     if (id == PETSCFE_CLASSID) useFEM = PETSC_TRUE;
42005f80ce2aSJacob Faibussowitsch     PetscCheck(id != PETSCFV_CLASSID, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Use of FVM with PCPATCH not yet implemented");
420192d50984SMatthew G. Knepley   }
420292d50984SMatthew G. Knepley   if (useFEM) {
42039566063dSJacob Faibussowitsch     PetscCall(DMGetCoordinateField(dm, &coordField));
42049566063dSJacob Faibussowitsch     PetscCall(DMFieldGetDegree(coordField, cellIS, NULL, &maxDegree));
420592d50984SMatthew G. Knepley     if (maxDegree <= 1) {
42069566063dSJacob Faibussowitsch       PetscCall(DMFieldCreateDefaultQuadrature(coordField, cellIS, &affineQuad));
420748a46eb9SPierre Jolivet       if (affineQuad) PetscCall(DMSNESGetFEGeom(coordField, cellIS, affineQuad, PETSC_FALSE, &affineGeom));
420892d50984SMatthew G. Knepley     } else {
42099566063dSJacob Faibussowitsch       PetscCall(PetscCalloc2(Nf, &quads, Nf, &geoms));
421092d50984SMatthew G. Knepley       for (f = 0; f < Nf; ++f) {
421192d50984SMatthew G. Knepley         PetscObject  obj;
421292d50984SMatthew G. Knepley         PetscClassId id;
421392d50984SMatthew G. Knepley         PetscBool    fimp;
421492d50984SMatthew G. Knepley 
42159566063dSJacob Faibussowitsch         PetscCall(PetscDSGetImplicit(prob, f, &fimp));
421692d50984SMatthew G. Knepley         if (isImplicit != fimp) continue;
42179566063dSJacob Faibussowitsch         PetscCall(PetscDSGetDiscretization(prob, f, &obj));
42189566063dSJacob Faibussowitsch         PetscCall(PetscObjectGetClassId(obj, &id));
421992d50984SMatthew G. Knepley         if (id == PETSCFE_CLASSID) {
422092d50984SMatthew G. Knepley           PetscFE fe = (PetscFE)obj;
422192d50984SMatthew G. Knepley 
42229566063dSJacob Faibussowitsch           PetscCall(PetscFEGetQuadrature(fe, &quads[f]));
42239566063dSJacob Faibussowitsch           PetscCall(PetscObjectReference((PetscObject)quads[f]));
42249566063dSJacob Faibussowitsch           PetscCall(DMSNESGetFEGeom(coordField, cellIS, quads[f], PETSC_FALSE, &geoms[f]));
422592d50984SMatthew G. Knepley         }
422692d50984SMatthew G. Knepley       }
422792d50984SMatthew G. Knepley     }
422892d50984SMatthew G. Knepley   }
422992d50984SMatthew G. Knepley   /* Loop over chunks */
42309566063dSJacob Faibussowitsch   PetscCall(ISGetPointRange(cellIS, &cStart, &cEnd, &cells));
42319566063dSJacob Faibussowitsch   PetscCall(DMPlexGetHeightStratum(dm, 1, &fStart, &fEnd));
42329566063dSJacob Faibussowitsch   if (useFEM) PetscCall(ISCreate(PETSC_COMM_SELF, &chunkIS));
423392d50984SMatthew G. Knepley   numCells      = cEnd - cStart;
423492d50984SMatthew G. Knepley   numChunks     = 1;
423592d50984SMatthew G. Knepley   cellChunkSize = numCells / numChunks;
423692d50984SMatthew G. Knepley   numChunks     = PetscMin(1, numCells);
42376528b96dSMatthew G. Knepley   key.label     = NULL;
42386528b96dSMatthew G. Knepley   key.value     = 0;
423906ad1575SMatthew G. Knepley   key.part      = 0;
424092d50984SMatthew G. Knepley   for (chunk = 0; chunk < numChunks; ++chunk) {
4241c0006e53SPatrick Farrell     PetscScalar     *elemVec, *fluxL = NULL, *fluxR = NULL;
4242c0006e53SPatrick Farrell     PetscReal       *vol   = NULL;
4243c0006e53SPatrick Farrell     PetscFVFaceGeom *fgeom = NULL;
424492d50984SMatthew G. Knepley     PetscInt         cS = cStart + chunk * cellChunkSize, cE = PetscMin(cS + cellChunkSize, cEnd), numCells = cE - cS, c;
4245c0006e53SPatrick Farrell     PetscInt         numFaces = 0;
424692d50984SMatthew G. Knepley 
424792d50984SMatthew G. Knepley     /* Extract field coefficients */
424892d50984SMatthew G. Knepley     if (useFEM) {
42499566063dSJacob Faibussowitsch       PetscCall(ISGetPointSubrange(chunkIS, cS, cE, cells));
42509566063dSJacob Faibussowitsch       PetscCall(DMPlexGetCellFields(dm, chunkIS, locX, locX_t, locA, &u, &u_t, &a));
42519566063dSJacob Faibussowitsch       PetscCall(DMGetWorkArray(dm, numCells * totDim, MPIU_SCALAR, &elemVec));
42529566063dSJacob Faibussowitsch       PetscCall(PetscArrayzero(elemVec, numCells * totDim));
425392d50984SMatthew G. Knepley     }
425492d50984SMatthew G. Knepley     /* TODO We will interlace both our field coefficients (u, u_t, uL, uR, etc.) and our output (elemVec, fL, fR). I think this works */
425592d50984SMatthew G. Knepley     /* Loop over fields */
425692d50984SMatthew G. Knepley     for (f = 0; f < Nf; ++f) {
425792d50984SMatthew G. Knepley       PetscObject  obj;
425892d50984SMatthew G. Knepley       PetscClassId id;
425992d50984SMatthew G. Knepley       PetscBool    fimp;
426092d50984SMatthew G. Knepley       PetscInt     numChunks, numBatches, batchSize, numBlocks, blockSize, Ne, Nr, offset;
426192d50984SMatthew G. Knepley 
42626528b96dSMatthew G. Knepley       key.field = f;
42639566063dSJacob Faibussowitsch       PetscCall(PetscDSGetImplicit(prob, f, &fimp));
426492d50984SMatthew G. Knepley       if (isImplicit != fimp) continue;
42659566063dSJacob Faibussowitsch       PetscCall(PetscDSGetDiscretization(prob, f, &obj));
42669566063dSJacob Faibussowitsch       PetscCall(PetscObjectGetClassId(obj, &id));
426792d50984SMatthew G. Knepley       if (id == PETSCFE_CLASSID) {
426892d50984SMatthew G. Knepley         PetscFE         fe        = (PetscFE)obj;
426992d50984SMatthew G. Knepley         PetscFEGeom    *geom      = affineGeom ? affineGeom : geoms[f];
427092d50984SMatthew G. Knepley         PetscFEGeom    *chunkGeom = NULL;
427192d50984SMatthew G. Knepley         PetscQuadrature quad      = affineQuad ? affineQuad : quads[f];
427292d50984SMatthew G. Knepley         PetscInt        Nq, Nb;
427392d50984SMatthew G. Knepley 
42749566063dSJacob Faibussowitsch         PetscCall(PetscFEGetTileSizes(fe, NULL, &numBlocks, NULL, &numBatches));
42759566063dSJacob Faibussowitsch         PetscCall(PetscQuadratureGetData(quad, NULL, NULL, &Nq, NULL, NULL));
42769566063dSJacob Faibussowitsch         PetscCall(PetscFEGetDimension(fe, &Nb));
427792d50984SMatthew G. Knepley         blockSize = Nb;
427892d50984SMatthew G. Knepley         batchSize = numBlocks * blockSize;
42799566063dSJacob Faibussowitsch         PetscCall(PetscFESetTileSizes(fe, blockSize, numBlocks, batchSize, numBatches));
428092d50984SMatthew G. Knepley         numChunks = numCells / (numBatches * batchSize);
428192d50984SMatthew G. Knepley         Ne        = numChunks * numBatches * batchSize;
428292d50984SMatthew G. Knepley         Nr        = numCells % (numBatches * batchSize);
428392d50984SMatthew G. Knepley         offset    = numCells - Nr;
428492d50984SMatthew G. Knepley         /* Integrate FE residual to get elemVec (need fields at quadrature points) */
428592d50984SMatthew G. Knepley         /*   For FV, I think we use a P0 basis and the cell coefficients (for subdivided cells, we can tweak the basis tabulation to be the indicator function) */
42869566063dSJacob Faibussowitsch         PetscCall(PetscFEGeomGetChunk(geom, 0, offset, &chunkGeom));
42879566063dSJacob Faibussowitsch         PetscCall(PetscFEIntegrateResidual(prob, key, Ne, chunkGeom, u, u_t, probAux, a, t, elemVec));
42889566063dSJacob Faibussowitsch         PetscCall(PetscFEGeomGetChunk(geom, offset, numCells, &chunkGeom));
42898e3a54c0SPierre Jolivet         PetscCall(PetscFEIntegrateResidual(prob, key, Nr, chunkGeom, &u[offset * totDim], PetscSafePointerPlusOffset(u_t, offset * totDim), probAux, &a[offset * totDimAux], t, &elemVec[offset * totDim]));
42909566063dSJacob Faibussowitsch         PetscCall(PetscFEGeomRestoreChunk(geom, offset, numCells, &chunkGeom));
429192d50984SMatthew G. Knepley       } else if (id == PETSCFV_CLASSID) {
429292d50984SMatthew G. Knepley         PetscFV fv = (PetscFV)obj;
429392d50984SMatthew G. Knepley 
429492d50984SMatthew G. Knepley         Ne = numFaces;
429592d50984SMatthew G. Knepley         /* Riemann solve over faces (need fields at face centroids) */
429692d50984SMatthew G. Knepley         /*   We need to evaluate FE fields at those coordinates */
42979566063dSJacob Faibussowitsch         PetscCall(PetscFVIntegrateRHSFunction(fv, prob, f, Ne, fgeom, vol, uL, uR, fluxL, fluxR));
429863a3b9bcSJacob Faibussowitsch       } else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, f);
429992d50984SMatthew G. Knepley     }
430092d50984SMatthew G. Knepley     /* Loop over domain */
430192d50984SMatthew G. Knepley     if (useFEM) {
430292d50984SMatthew G. Knepley       /* Add elemVec to locX */
430392d50984SMatthew G. Knepley       for (c = cS; c < cE; ++c) {
430492d50984SMatthew G. Knepley         const PetscInt cell = cells ? cells[c] : c;
430592d50984SMatthew G. Knepley         const PetscInt cind = c - cStart;
430692d50984SMatthew G. Knepley 
43079566063dSJacob Faibussowitsch         if (mesh->printFEM > 1) PetscCall(DMPrintCellVector(cell, name, totDim, &elemVec[cind * totDim]));
430892d50984SMatthew G. Knepley         if (ghostLabel) {
430992d50984SMatthew G. Knepley           PetscInt ghostVal;
431092d50984SMatthew G. Knepley 
43119566063dSJacob Faibussowitsch           PetscCall(DMLabelGetValue(ghostLabel, cell, &ghostVal));
431292d50984SMatthew G. Knepley           if (ghostVal > 0) continue;
431392d50984SMatthew G. Knepley         }
43149566063dSJacob Faibussowitsch         PetscCall(DMPlexVecSetClosure(dm, section, locF, cell, &elemVec[cind * totDim], ADD_ALL_VALUES));
431592d50984SMatthew G. Knepley       }
431692d50984SMatthew G. Knepley     }
431792d50984SMatthew G. Knepley     /* Handle time derivative */
431892d50984SMatthew G. Knepley     if (locX_t) {
431992d50984SMatthew G. Knepley       PetscScalar *x_t, *fa;
432092d50984SMatthew G. Knepley 
43219566063dSJacob Faibussowitsch       PetscCall(VecGetArray(locF, &fa));
43229566063dSJacob Faibussowitsch       PetscCall(VecGetArray(locX_t, &x_t));
432392d50984SMatthew G. Knepley       for (f = 0; f < Nf; ++f) {
432492d50984SMatthew G. Knepley         PetscFV      fv;
432592d50984SMatthew G. Knepley         PetscObject  obj;
432692d50984SMatthew G. Knepley         PetscClassId id;
432792d50984SMatthew G. Knepley         PetscInt     pdim, d;
432892d50984SMatthew G. Knepley 
43299566063dSJacob Faibussowitsch         PetscCall(PetscDSGetDiscretization(prob, f, &obj));
43309566063dSJacob Faibussowitsch         PetscCall(PetscObjectGetClassId(obj, &id));
433192d50984SMatthew G. Knepley         if (id != PETSCFV_CLASSID) continue;
433292d50984SMatthew G. Knepley         fv = (PetscFV)obj;
43339566063dSJacob Faibussowitsch         PetscCall(PetscFVGetNumComponents(fv, &pdim));
433492d50984SMatthew G. Knepley         for (c = cS; c < cE; ++c) {
433592d50984SMatthew G. Knepley           const PetscInt cell = cells ? cells[c] : c;
433692d50984SMatthew G. Knepley           PetscScalar   *u_t, *r;
433792d50984SMatthew G. Knepley 
433892d50984SMatthew G. Knepley           if (ghostLabel) {
433992d50984SMatthew G. Knepley             PetscInt ghostVal;
434092d50984SMatthew G. Knepley 
43419566063dSJacob Faibussowitsch             PetscCall(DMLabelGetValue(ghostLabel, cell, &ghostVal));
434292d50984SMatthew G. Knepley             if (ghostVal > 0) continue;
434392d50984SMatthew G. Knepley           }
43449566063dSJacob Faibussowitsch           PetscCall(DMPlexPointLocalFieldRead(dm, cell, f, x_t, &u_t));
43459566063dSJacob Faibussowitsch           PetscCall(DMPlexPointLocalFieldRef(dm, cell, f, fa, &r));
434692d50984SMatthew G. Knepley           for (d = 0; d < pdim; ++d) r[d] += u_t[d];
434792d50984SMatthew G. Knepley         }
434892d50984SMatthew G. Knepley       }
43499566063dSJacob Faibussowitsch       PetscCall(VecRestoreArray(locX_t, &x_t));
43509566063dSJacob Faibussowitsch       PetscCall(VecRestoreArray(locF, &fa));
435192d50984SMatthew G. Knepley     }
435292d50984SMatthew G. Knepley     if (useFEM) {
43539566063dSJacob Faibussowitsch       PetscCall(DMPlexRestoreCellFields(dm, chunkIS, locX, locX_t, locA, &u, &u_t, &a));
43549566063dSJacob Faibussowitsch       PetscCall(DMRestoreWorkArray(dm, numCells * totDim, MPIU_SCALAR, &elemVec));
435592d50984SMatthew G. Knepley     }
435692d50984SMatthew G. Knepley   }
43579566063dSJacob Faibussowitsch   if (useFEM) PetscCall(ISDestroy(&chunkIS));
43589566063dSJacob Faibussowitsch   PetscCall(ISRestorePointRange(cellIS, &cStart, &cEnd, &cells));
435992d50984SMatthew G. Knepley   /* TODO Could include boundary residual here (see DMPlexComputeResidual_Internal) */
436092d50984SMatthew G. Knepley   if (useFEM) {
436192d50984SMatthew G. Knepley     if (maxDegree <= 1) {
43629566063dSJacob Faibussowitsch       PetscCall(DMSNESRestoreFEGeom(coordField, cellIS, affineQuad, PETSC_FALSE, &affineGeom));
43639566063dSJacob Faibussowitsch       PetscCall(PetscQuadratureDestroy(&affineQuad));
436492d50984SMatthew G. Knepley     } else {
436592d50984SMatthew G. Knepley       for (f = 0; f < Nf; ++f) {
43669566063dSJacob Faibussowitsch         PetscCall(DMSNESRestoreFEGeom(coordField, cellIS, quads[f], PETSC_FALSE, &geoms[f]));
43679566063dSJacob Faibussowitsch         PetscCall(PetscQuadratureDestroy(&quads[f]));
436892d50984SMatthew G. Knepley       }
43699566063dSJacob Faibussowitsch       PetscCall(PetscFree2(quads, geoms));
437092d50984SMatthew G. Knepley     }
437192d50984SMatthew G. Knepley   }
43729566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(DMPLEX_ResidualFEM, dm, 0, 0, 0));
43733ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
437492d50984SMatthew G. Knepley }
437592d50984SMatthew G. Knepley 
4376a1cf66bbSMatthew G. Knepley /*
4377a1cf66bbSMatthew G. Knepley   We always assemble JacP, and if the matrix is different from Jac and two different sets of point functions are provided, we also assemble Jac
4378a1cf66bbSMatthew G. Knepley 
4379a1cf66bbSMatthew G. Knepley   X   - The local solution vector
4380a5b23f4aSJose E. Roman   X_t - The local solution time derivative vector, or NULL
4381a1cf66bbSMatthew G. Knepley */
4382d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeJacobian_Patch_Internal(DM dm, PetscSection section, PetscSection globalSection, IS cellIS, PetscReal t, PetscReal X_tShift, Vec X, Vec X_t, Mat Jac, Mat JacP, void *ctx)
4383d71ae5a4SJacob Faibussowitsch {
4384a1cf66bbSMatthew G. Knepley   DM_Plex        *mesh = (DM_Plex *)dm->data;
4385a1cf66bbSMatthew G. Knepley   const char     *name = "Jacobian", *nameP = "JacobianPre";
4386a1cf66bbSMatthew G. Knepley   DM              dmAux = NULL;
4387a1cf66bbSMatthew G. Knepley   PetscDS         prob, probAux = NULL;
4388a1cf66bbSMatthew G. Knepley   PetscSection    sectionAux = NULL;
4389a1cf66bbSMatthew G. Knepley   Vec             A;
4390a1cf66bbSMatthew G. Knepley   DMField         coordField;
4391a1cf66bbSMatthew G. Knepley   PetscFEGeom    *cgeomFEM;
4392a1cf66bbSMatthew G. Knepley   PetscQuadrature qGeom = NULL;
4393a1cf66bbSMatthew G. Knepley   Mat             J = Jac, JP = JacP;
4394a1cf66bbSMatthew G. Knepley   PetscScalar    *work, *u = NULL, *u_t = NULL, *a = NULL, *elemMat = NULL, *elemMatP = NULL, *elemMatD = NULL;
4395e432b41dSStefano Zampini   PetscBool       hasJac, hasPrec, hasDyn, assembleJac, *isFE, hasFV = PETSC_FALSE;
4396a1cf66bbSMatthew G. Knepley   const PetscInt *cells;
439706ad1575SMatthew G. Knepley   PetscFormKey    key;
43989b2fc754SMatthew G. Knepley   PetscInt        Nf, fieldI, fieldJ, maxDegree, numCells, cStart, cEnd, numChunks, chunkSize, chunk, totDim, totDimAux = 0, sz, wsz, off = 0, offCell = 0;
4399a1cf66bbSMatthew G. Knepley 
4400a1cf66bbSMatthew G. Knepley   PetscFunctionBegin;
44019566063dSJacob Faibussowitsch   PetscCall(ISGetLocalSize(cellIS, &numCells));
44029566063dSJacob Faibussowitsch   PetscCall(ISGetPointRange(cellIS, &cStart, &cEnd, &cells));
44039566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(DMPLEX_JacobianFEM, dm, 0, 0, 0));
44049566063dSJacob Faibussowitsch   PetscCall(DMGetDS(dm, &prob));
44059566063dSJacob Faibussowitsch   PetscCall(DMGetAuxiliaryVec(dm, NULL, 0, 0, &A));
44069a2a23afSMatthew G. Knepley   if (A) {
44079566063dSJacob Faibussowitsch     PetscCall(VecGetDM(A, &dmAux));
44089566063dSJacob Faibussowitsch     PetscCall(DMGetLocalSection(dmAux, &sectionAux));
44099566063dSJacob Faibussowitsch     PetscCall(DMGetDS(dmAux, &probAux));
4410a1cf66bbSMatthew G. Knepley   }
4411a1cf66bbSMatthew G. Knepley   /* Get flags */
44129566063dSJacob Faibussowitsch   PetscCall(PetscDSGetNumFields(prob, &Nf));
44139566063dSJacob Faibussowitsch   PetscCall(DMGetWorkArray(dm, Nf, MPIU_BOOL, &isFE));
4414a1cf66bbSMatthew G. Knepley   for (fieldI = 0; fieldI < Nf; ++fieldI) {
4415a1cf66bbSMatthew G. Knepley     PetscObject  disc;
4416a1cf66bbSMatthew G. Knepley     PetscClassId id;
44179566063dSJacob Faibussowitsch     PetscCall(PetscDSGetDiscretization(prob, fieldI, &disc));
44189566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetClassId(disc, &id));
44199371c9d4SSatish Balay     if (id == PETSCFE_CLASSID) {
44209371c9d4SSatish Balay       isFE[fieldI] = PETSC_TRUE;
44219371c9d4SSatish Balay     } else if (id == PETSCFV_CLASSID) {
44229371c9d4SSatish Balay       hasFV        = PETSC_TRUE;
44239371c9d4SSatish Balay       isFE[fieldI] = PETSC_FALSE;
44249371c9d4SSatish Balay     }
4425a1cf66bbSMatthew G. Knepley   }
44269566063dSJacob Faibussowitsch   PetscCall(PetscDSHasJacobian(prob, &hasJac));
44279566063dSJacob Faibussowitsch   PetscCall(PetscDSHasJacobianPreconditioner(prob, &hasPrec));
44289566063dSJacob Faibussowitsch   PetscCall(PetscDSHasDynamicJacobian(prob, &hasDyn));
4429a1cf66bbSMatthew G. Knepley   assembleJac = hasJac && hasPrec && (Jac != JacP) ? PETSC_TRUE : PETSC_FALSE;
4430a1cf66bbSMatthew G. Knepley   hasDyn      = hasDyn && (X_tShift != 0.0) ? PETSC_TRUE : PETSC_FALSE;
44319566063dSJacob Faibussowitsch   if (hasFV) PetscCall(MatSetOption(JP, MAT_IGNORE_ZERO_ENTRIES, PETSC_TRUE)); /* No allocated space for FV stuff, so ignore the zero entries */
44329566063dSJacob Faibussowitsch   PetscCall(PetscDSGetTotalDimension(prob, &totDim));
44339566063dSJacob Faibussowitsch   if (probAux) PetscCall(PetscDSGetTotalDimension(probAux, &totDimAux));
4434a1cf66bbSMatthew G. Knepley   /* Compute batch sizes */
4435a1cf66bbSMatthew G. Knepley   if (isFE[0]) {
4436a1cf66bbSMatthew G. Knepley     PetscFE         fe;
4437a1cf66bbSMatthew G. Knepley     PetscQuadrature q;
4438a1cf66bbSMatthew G. Knepley     PetscInt        numQuadPoints, numBatches, batchSize, numBlocks, blockSize, Nb;
4439a1cf66bbSMatthew G. Knepley 
44409566063dSJacob Faibussowitsch     PetscCall(PetscDSGetDiscretization(prob, 0, (PetscObject *)&fe));
44419566063dSJacob Faibussowitsch     PetscCall(PetscFEGetQuadrature(fe, &q));
44429566063dSJacob Faibussowitsch     PetscCall(PetscQuadratureGetData(q, NULL, NULL, &numQuadPoints, NULL, NULL));
44439566063dSJacob Faibussowitsch     PetscCall(PetscFEGetDimension(fe, &Nb));
44449566063dSJacob Faibussowitsch     PetscCall(PetscFEGetTileSizes(fe, NULL, &numBlocks, NULL, &numBatches));
4445a1cf66bbSMatthew G. Knepley     blockSize = Nb * numQuadPoints;
4446a1cf66bbSMatthew G. Knepley     batchSize = numBlocks * blockSize;
4447a1cf66bbSMatthew G. Knepley     chunkSize = numBatches * batchSize;
4448a1cf66bbSMatthew G. Knepley     numChunks = numCells / chunkSize + numCells % chunkSize;
44499566063dSJacob Faibussowitsch     PetscCall(PetscFESetTileSizes(fe, blockSize, numBlocks, batchSize, numBatches));
4450a1cf66bbSMatthew G. Knepley   } else {
4451a1cf66bbSMatthew G. Knepley     chunkSize = numCells;
4452a1cf66bbSMatthew G. Knepley     numChunks = 1;
4453a1cf66bbSMatthew G. Knepley   }
4454a1cf66bbSMatthew G. Knepley   /* Get work space */
4455a1cf66bbSMatthew G. Knepley   wsz = (((X ? 1 : 0) + (X_t ? 1 : 0) + (dmAux ? 1 : 0)) * totDim + ((hasJac ? 1 : 0) + (hasPrec ? 1 : 0) + (hasDyn ? 1 : 0)) * totDim * totDim) * chunkSize;
44569566063dSJacob Faibussowitsch   PetscCall(DMGetWorkArray(dm, wsz, MPIU_SCALAR, &work));
44579566063dSJacob Faibussowitsch   PetscCall(PetscArrayzero(work, wsz));
4458a1cf66bbSMatthew G. Knepley   off      = 0;
4459a1cf66bbSMatthew G. Knepley   u        = X ? (sz = chunkSize * totDim, off += sz, work + off - sz) : NULL;
4460a1cf66bbSMatthew G. Knepley   u_t      = X_t ? (sz = chunkSize * totDim, off += sz, work + off - sz) : NULL;
4461a1cf66bbSMatthew G. Knepley   a        = dmAux ? (sz = chunkSize * totDimAux, off += sz, work + off - sz) : NULL;
4462a1cf66bbSMatthew G. Knepley   elemMat  = hasJac ? (sz = chunkSize * totDim * totDim, off += sz, work + off - sz) : NULL;
4463a1cf66bbSMatthew G. Knepley   elemMatP = hasPrec ? (sz = chunkSize * totDim * totDim, off += sz, work + off - sz) : NULL;
4464a1cf66bbSMatthew G. Knepley   elemMatD = hasDyn ? (sz = chunkSize * totDim * totDim, off += sz, work + off - sz) : NULL;
446563a3b9bcSJacob Faibussowitsch   PetscCheck(off == wsz, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Error is workspace size %" PetscInt_FMT " should be %" PetscInt_FMT, off, wsz);
4466a1cf66bbSMatthew G. Knepley   /* Setup geometry */
44679566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateField(dm, &coordField));
44689566063dSJacob Faibussowitsch   PetscCall(DMFieldGetDegree(coordField, cellIS, NULL, &maxDegree));
44699566063dSJacob Faibussowitsch   if (maxDegree <= 1) PetscCall(DMFieldCreateDefaultQuadrature(coordField, cellIS, &qGeom));
4470a1cf66bbSMatthew G. Knepley   if (!qGeom) {
4471a1cf66bbSMatthew G. Knepley     PetscFE fe;
4472a1cf66bbSMatthew G. Knepley 
44739566063dSJacob Faibussowitsch     PetscCall(PetscDSGetDiscretization(prob, 0, (PetscObject *)&fe));
44749566063dSJacob Faibussowitsch     PetscCall(PetscFEGetQuadrature(fe, &qGeom));
44759566063dSJacob Faibussowitsch     PetscCall(PetscObjectReference((PetscObject)qGeom));
4476a1cf66bbSMatthew G. Knepley   }
44779566063dSJacob Faibussowitsch   PetscCall(DMSNESGetFEGeom(coordField, cellIS, qGeom, PETSC_FALSE, &cgeomFEM));
4478a1cf66bbSMatthew G. Knepley   /* Compute volume integrals */
44799566063dSJacob Faibussowitsch   if (assembleJac) PetscCall(MatZeroEntries(J));
44809566063dSJacob Faibussowitsch   PetscCall(MatZeroEntries(JP));
44816528b96dSMatthew G. Knepley   key.label = NULL;
44826528b96dSMatthew G. Knepley   key.value = 0;
448306ad1575SMatthew G. Knepley   key.part  = 0;
4484a1cf66bbSMatthew G. Knepley   for (chunk = 0; chunk < numChunks; ++chunk, offCell += chunkSize) {
4485a1cf66bbSMatthew G. Knepley     const PetscInt Ncell = PetscMin(chunkSize, numCells - offCell);
4486a1cf66bbSMatthew G. Knepley     PetscInt       c;
4487a1cf66bbSMatthew G. Knepley 
4488a1cf66bbSMatthew G. Knepley     /* Extract values */
4489a1cf66bbSMatthew G. Knepley     for (c = 0; c < Ncell; ++c) {
4490a1cf66bbSMatthew G. Knepley       const PetscInt cell = cells ? cells[c + offCell] : c + offCell;
4491a1cf66bbSMatthew G. Knepley       PetscScalar   *x = NULL, *x_t = NULL;
4492a1cf66bbSMatthew G. Knepley       PetscInt       i;
4493a1cf66bbSMatthew G. Knepley 
4494a1cf66bbSMatthew G. Knepley       if (X) {
44959566063dSJacob Faibussowitsch         PetscCall(DMPlexVecGetClosure(dm, section, X, cell, NULL, &x));
4496a1cf66bbSMatthew G. Knepley         for (i = 0; i < totDim; ++i) u[c * totDim + i] = x[i];
44979566063dSJacob Faibussowitsch         PetscCall(DMPlexVecRestoreClosure(dm, section, X, cell, NULL, &x));
4498a1cf66bbSMatthew G. Knepley       }
4499a1cf66bbSMatthew G. Knepley       if (X_t) {
45009566063dSJacob Faibussowitsch         PetscCall(DMPlexVecGetClosure(dm, section, X_t, cell, NULL, &x_t));
4501a1cf66bbSMatthew G. Knepley         for (i = 0; i < totDim; ++i) u_t[c * totDim + i] = x_t[i];
45029566063dSJacob Faibussowitsch         PetscCall(DMPlexVecRestoreClosure(dm, section, X_t, cell, NULL, &x_t));
4503a1cf66bbSMatthew G. Knepley       }
4504a1cf66bbSMatthew G. Knepley       if (dmAux) {
45059566063dSJacob Faibussowitsch         PetscCall(DMPlexVecGetClosure(dmAux, sectionAux, A, cell, NULL, &x));
4506a1cf66bbSMatthew G. Knepley         for (i = 0; i < totDimAux; ++i) a[c * totDimAux + i] = x[i];
45079566063dSJacob Faibussowitsch         PetscCall(DMPlexVecRestoreClosure(dmAux, sectionAux, A, cell, NULL, &x));
4508a1cf66bbSMatthew G. Knepley       }
4509a1cf66bbSMatthew G. Knepley     }
4510a1cf66bbSMatthew G. Knepley     for (fieldI = 0; fieldI < Nf; ++fieldI) {
4511a1cf66bbSMatthew G. Knepley       PetscFE fe;
45129566063dSJacob Faibussowitsch       PetscCall(PetscDSGetDiscretization(prob, fieldI, (PetscObject *)&fe));
4513a1cf66bbSMatthew G. Knepley       for (fieldJ = 0; fieldJ < Nf; ++fieldJ) {
45146528b96dSMatthew G. Knepley         key.field = fieldI * Nf + fieldJ;
45159566063dSJacob Faibussowitsch         if (hasJac) PetscCall(PetscFEIntegrateJacobian(prob, PETSCFE_JACOBIAN, key, Ncell, cgeomFEM, u, u_t, probAux, a, t, X_tShift, elemMat));
45169566063dSJacob Faibussowitsch         if (hasPrec) PetscCall(PetscFEIntegrateJacobian(prob, PETSCFE_JACOBIAN_PRE, key, Ncell, cgeomFEM, u, u_t, probAux, a, t, X_tShift, elemMatP));
45179566063dSJacob Faibussowitsch         if (hasDyn) PetscCall(PetscFEIntegrateJacobian(prob, PETSCFE_JACOBIAN_DYN, key, Ncell, cgeomFEM, u, u_t, probAux, a, t, X_tShift, elemMatD));
4518a1cf66bbSMatthew G. Knepley       }
4519a1cf66bbSMatthew G. Knepley       /* For finite volume, add the identity */
4520a1cf66bbSMatthew G. Knepley       if (!isFE[fieldI]) {
4521a1cf66bbSMatthew G. Knepley         PetscFV  fv;
4522a1cf66bbSMatthew G. Knepley         PetscInt eOffset = 0, Nc, fc, foff;
4523a1cf66bbSMatthew G. Knepley 
45249566063dSJacob Faibussowitsch         PetscCall(PetscDSGetFieldOffset(prob, fieldI, &foff));
45259566063dSJacob Faibussowitsch         PetscCall(PetscDSGetDiscretization(prob, fieldI, (PetscObject *)&fv));
45269566063dSJacob Faibussowitsch         PetscCall(PetscFVGetNumComponents(fv, &Nc));
4527a1cf66bbSMatthew G. Knepley         for (c = 0; c < chunkSize; ++c, eOffset += totDim * totDim) {
4528a1cf66bbSMatthew G. Knepley           for (fc = 0; fc < Nc; ++fc) {
4529a1cf66bbSMatthew G. Knepley             const PetscInt i = foff + fc;
4530ad540459SPierre Jolivet             if (hasJac) elemMat[eOffset + i * totDim + i] = 1.0;
4531ad540459SPierre Jolivet             if (hasPrec) elemMatP[eOffset + i * totDim + i] = 1.0;
4532a1cf66bbSMatthew G. Knepley           }
4533a1cf66bbSMatthew G. Knepley         }
4534a1cf66bbSMatthew G. Knepley       }
4535a1cf66bbSMatthew G. Knepley     }
4536a1cf66bbSMatthew G. Knepley     /*   Add contribution from X_t */
45379371c9d4SSatish Balay     if (hasDyn) {
45389371c9d4SSatish Balay       for (c = 0; c < chunkSize * totDim * totDim; ++c) elemMat[c] += X_tShift * elemMatD[c];
45399371c9d4SSatish Balay     }
4540a1cf66bbSMatthew G. Knepley     /* Insert values into matrix */
4541a1cf66bbSMatthew G. Knepley     for (c = 0; c < Ncell; ++c) {
4542a1cf66bbSMatthew G. Knepley       const PetscInt cell = cells ? cells[c + offCell] : c + offCell;
4543a1cf66bbSMatthew G. Knepley       if (mesh->printFEM > 1) {
45449566063dSJacob Faibussowitsch         if (hasJac) PetscCall(DMPrintCellMatrix(cell, name, totDim, totDim, &elemMat[(c - cStart) * totDim * totDim]));
45459566063dSJacob Faibussowitsch         if (hasPrec) PetscCall(DMPrintCellMatrix(cell, nameP, totDim, totDim, &elemMatP[(c - cStart) * totDim * totDim]));
4546a1cf66bbSMatthew G. Knepley       }
4547e8e188d2SZach Atkins       if (assembleJac) PetscCall(DMPlexMatSetClosure_Internal(dm, section, globalSection, mesh->useMatClPerm, Jac, cell, &elemMat[(c - cStart) * totDim * totDim], ADD_VALUES));
4548e8e188d2SZach Atkins       PetscCall(DMPlexMatSetClosure_Internal(dm, section, globalSection, mesh->useMatClPerm, JP, cell, &elemMat[(c - cStart) * totDim * totDim], ADD_VALUES));
4549a1cf66bbSMatthew G. Knepley     }
4550a1cf66bbSMatthew G. Knepley   }
4551a1cf66bbSMatthew G. Knepley   /* Cleanup */
45529566063dSJacob Faibussowitsch   PetscCall(DMSNESRestoreFEGeom(coordField, cellIS, qGeom, PETSC_FALSE, &cgeomFEM));
45539566063dSJacob Faibussowitsch   PetscCall(PetscQuadratureDestroy(&qGeom));
45549566063dSJacob Faibussowitsch   if (hasFV) PetscCall(MatSetOption(JacP, MAT_IGNORE_ZERO_ENTRIES, PETSC_FALSE));
45559566063dSJacob Faibussowitsch   PetscCall(DMRestoreWorkArray(dm, Nf, MPIU_BOOL, &isFE));
45569566063dSJacob Faibussowitsch   PetscCall(DMRestoreWorkArray(dm, ((1 + (X_t ? 1 : 0) + (dmAux ? 1 : 0)) * totDim + ((hasJac ? 1 : 0) + (hasPrec ? 1 : 0) + (hasDyn ? 1 : 0)) * totDim * totDim) * chunkSize, MPIU_SCALAR, &work));
4557a1cf66bbSMatthew G. Knepley   /* Compute boundary integrals */
45589566063dSJacob Faibussowitsch   /* PetscCall(DMPlexComputeBdJacobian_Internal(dm, X, X_t, t, X_tShift, Jac, JacP, ctx)); */
4559a1cf66bbSMatthew G. Knepley   /* Assemble matrix */
45609371c9d4SSatish Balay   if (assembleJac) {
45619371c9d4SSatish Balay     PetscCall(MatAssemblyBegin(Jac, MAT_FINAL_ASSEMBLY));
45629371c9d4SSatish Balay     PetscCall(MatAssemblyEnd(Jac, MAT_FINAL_ASSEMBLY));
45639371c9d4SSatish Balay   }
45649371c9d4SSatish Balay   PetscCall(MatAssemblyBegin(JacP, MAT_FINAL_ASSEMBLY));
45659371c9d4SSatish Balay   PetscCall(MatAssemblyEnd(JacP, MAT_FINAL_ASSEMBLY));
45669566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(DMPLEX_JacobianFEM, dm, 0, 0, 0));
45673ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
4568a1cf66bbSMatthew G. Knepley }
45693e9753d6SMatthew G. Knepley 
45703e9753d6SMatthew G. Knepley /******** FEM Assembly Function ********/
45713e9753d6SMatthew G. Knepley 
4572d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMConvertPlex_Internal(DM dm, DM *plex, PetscBool copy)
4573d71ae5a4SJacob Faibussowitsch {
45743e9753d6SMatthew G. Knepley   PetscBool isPlex;
45753e9753d6SMatthew G. Knepley 
45763e9753d6SMatthew G. Knepley   PetscFunctionBegin;
45779566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)dm, DMPLEX, &isPlex));
45783e9753d6SMatthew G. Knepley   if (isPlex) {
45793e9753d6SMatthew G. Knepley     *plex = dm;
45809566063dSJacob Faibussowitsch     PetscCall(PetscObjectReference((PetscObject)dm));
45813e9753d6SMatthew G. Knepley   } else {
45829566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)dm, "dm_plex", (PetscObject *)plex));
45833e9753d6SMatthew G. Knepley     if (!*plex) {
45849566063dSJacob Faibussowitsch       PetscCall(DMConvert(dm, DMPLEX, plex));
45859566063dSJacob Faibussowitsch       PetscCall(PetscObjectCompose((PetscObject)dm, "dm_plex", (PetscObject)*plex));
45863e9753d6SMatthew G. Knepley     } else {
45879566063dSJacob Faibussowitsch       PetscCall(PetscObjectReference((PetscObject)*plex));
45883e9753d6SMatthew G. Knepley     }
4589cbf8eb3cSStefano Zampini     if (copy) PetscCall(DMCopyAuxiliaryVec(dm, *plex));
45903e9753d6SMatthew G. Knepley   }
45913ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
45923e9753d6SMatthew G. Knepley }
45933e9753d6SMatthew G. Knepley 
45943e9753d6SMatthew G. Knepley /*@
45953e9753d6SMatthew G. Knepley   DMPlexGetGeometryFVM - Return precomputed geometric data
45963e9753d6SMatthew G. Knepley 
459720f4b53cSBarry Smith   Collective
45983e9753d6SMatthew G. Knepley 
45993e9753d6SMatthew G. Knepley   Input Parameter:
4600a1cb98faSBarry Smith . dm - The `DM`
46013e9753d6SMatthew G. Knepley 
46023e9753d6SMatthew G. Knepley   Output Parameters:
46033e9753d6SMatthew G. Knepley + facegeom  - The values precomputed from face geometry
46043e9753d6SMatthew G. Knepley . cellgeom  - The values precomputed from cell geometry
46053e9753d6SMatthew G. Knepley - minRadius - The minimum radius over the mesh of an inscribed sphere in a cell
46063e9753d6SMatthew G. Knepley 
46073e9753d6SMatthew G. Knepley   Level: developer
46083e9753d6SMatthew G. Knepley 
46091cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMTSSetRHSFunctionLocal()`
46103e9753d6SMatthew G. Knepley @*/
4611d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexGetGeometryFVM(DM dm, Vec *facegeom, Vec *cellgeom, PetscReal *minRadius)
4612d71ae5a4SJacob Faibussowitsch {
46133e9753d6SMatthew G. Knepley   DM plex;
46143e9753d6SMatthew G. Knepley 
46153e9753d6SMatthew G. Knepley   PetscFunctionBegin;
46163e9753d6SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
46179566063dSJacob Faibussowitsch   PetscCall(DMConvertPlex_Internal(dm, &plex, PETSC_TRUE));
46189566063dSJacob Faibussowitsch   PetscCall(DMPlexGetDataFVM(plex, NULL, cellgeom, facegeom, NULL));
46199566063dSJacob Faibussowitsch   if (minRadius) PetscCall(DMPlexGetMinRadius(plex, minRadius));
46209566063dSJacob Faibussowitsch   PetscCall(DMDestroy(&plex));
46213ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
46223e9753d6SMatthew G. Knepley }
46233e9753d6SMatthew G. Knepley 
46243e9753d6SMatthew G. Knepley /*@
46253e9753d6SMatthew G. Knepley   DMPlexGetGradientDM - Return gradient data layout
46263e9753d6SMatthew G. Knepley 
462720f4b53cSBarry Smith   Collective
46283e9753d6SMatthew G. Knepley 
46293e9753d6SMatthew G. Knepley   Input Parameters:
4630a1cb98faSBarry Smith + dm - The `DM`
463120f4b53cSBarry Smith - fv - The `PetscFV`
46323e9753d6SMatthew G. Knepley 
46333e9753d6SMatthew G. Knepley   Output Parameter:
46343e9753d6SMatthew G. Knepley . dmGrad - The layout for gradient values
46353e9753d6SMatthew G. Knepley 
46363e9753d6SMatthew G. Knepley   Level: developer
46373e9753d6SMatthew G. Knepley 
46381cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexGetGeometryFVM()`
46393e9753d6SMatthew G. Knepley @*/
4640d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexGetGradientDM(DM dm, PetscFV fv, DM *dmGrad)
4641d71ae5a4SJacob Faibussowitsch {
46423e9753d6SMatthew G. Knepley   DM        plex;
46433e9753d6SMatthew G. Knepley   PetscBool computeGradients;
46443e9753d6SMatthew G. Knepley 
46453e9753d6SMatthew G. Knepley   PetscFunctionBegin;
46463e9753d6SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
46473e9753d6SMatthew G. Knepley   PetscValidHeaderSpecific(fv, PETSCFV_CLASSID, 2);
46484f572ea9SToby Isaac   PetscAssertPointer(dmGrad, 3);
46499566063dSJacob Faibussowitsch   PetscCall(PetscFVGetComputeGradients(fv, &computeGradients));
46509371c9d4SSatish Balay   if (!computeGradients) {
46519371c9d4SSatish Balay     *dmGrad = NULL;
46523ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
46539371c9d4SSatish Balay   }
46549566063dSJacob Faibussowitsch   PetscCall(DMConvertPlex_Internal(dm, &plex, PETSC_TRUE));
46559566063dSJacob Faibussowitsch   PetscCall(DMPlexGetDataFVM(plex, fv, NULL, NULL, dmGrad));
46569566063dSJacob Faibussowitsch   PetscCall(DMDestroy(&plex));
46573ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
46583e9753d6SMatthew G. Knepley }
46593e9753d6SMatthew G. Knepley 
4660d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexComputeBdResidual_Single_Internal(DM dm, PetscReal t, PetscWeakForm wf, PetscFormKey key, Vec locX, Vec locX_t, Vec locF, DMField coordField, IS facetIS)
4661d71ae5a4SJacob Faibussowitsch {
46623e9753d6SMatthew G. Knepley   DM_Plex        *mesh = (DM_Plex *)dm->data;
46633e9753d6SMatthew G. Knepley   DM              plex = NULL, plexA = NULL;
46643e9753d6SMatthew G. Knepley   DMEnclosureType encAux;
46653e9753d6SMatthew G. Knepley   PetscDS         prob, probAux       = NULL;
46663e9753d6SMatthew G. Knepley   PetscSection    section, sectionAux = NULL;
46673e9753d6SMatthew G. Knepley   Vec             locA = NULL;
46683e9753d6SMatthew G. Knepley   PetscScalar    *u = NULL, *u_t = NULL, *a = NULL, *elemVec = NULL;
46693e9753d6SMatthew G. Knepley   PetscInt        totDim, totDimAux = 0;
46703e9753d6SMatthew G. Knepley 
46713e9753d6SMatthew G. Knepley   PetscFunctionBegin;
46729566063dSJacob Faibussowitsch   PetscCall(DMConvert(dm, DMPLEX, &plex));
46739566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dm, &section));
46749566063dSJacob Faibussowitsch   PetscCall(DMGetDS(dm, &prob));
46759566063dSJacob Faibussowitsch   PetscCall(PetscDSGetTotalDimension(prob, &totDim));
46769566063dSJacob Faibussowitsch   PetscCall(DMGetAuxiliaryVec(dm, key.label, key.value, key.part, &locA));
46773e9753d6SMatthew G. Knepley   if (locA) {
46783e9753d6SMatthew G. Knepley     DM dmAux;
46793e9753d6SMatthew G. Knepley 
46809566063dSJacob Faibussowitsch     PetscCall(VecGetDM(locA, &dmAux));
46819566063dSJacob Faibussowitsch     PetscCall(DMGetEnclosureRelation(dmAux, dm, &encAux));
46829566063dSJacob Faibussowitsch     PetscCall(DMConvert(dmAux, DMPLEX, &plexA));
46839566063dSJacob Faibussowitsch     PetscCall(DMGetDS(plexA, &probAux));
46849566063dSJacob Faibussowitsch     PetscCall(PetscDSGetTotalDimension(probAux, &totDimAux));
46859566063dSJacob Faibussowitsch     PetscCall(DMGetLocalSection(plexA, &sectionAux));
46863e9753d6SMatthew G. Knepley   }
46870c290148SMatthew G. Knepley   {
46883e9753d6SMatthew G. Knepley     PetscFEGeom    *fgeom;
46893e9753d6SMatthew G. Knepley     PetscInt        maxDegree;
46903e9753d6SMatthew G. Knepley     PetscQuadrature qGeom = NULL;
46913e9753d6SMatthew G. Knepley     IS              pointIS;
46923e9753d6SMatthew G. Knepley     const PetscInt *points;
46933e9753d6SMatthew G. Knepley     PetscInt        numFaces, face, Nq;
46943e9753d6SMatthew G. Knepley 
46959566063dSJacob Faibussowitsch     PetscCall(DMLabelGetStratumIS(key.label, key.value, &pointIS));
46960c290148SMatthew G. Knepley     if (!pointIS) goto end; /* No points with that id on this process */
46973e9753d6SMatthew G. Knepley     {
46983e9753d6SMatthew G. Knepley       IS isectIS;
46993e9753d6SMatthew G. Knepley 
47003e9753d6SMatthew G. Knepley       /* TODO: Special cases of ISIntersect where it is quick to check a priori if one is a superset of the other */
47019566063dSJacob Faibussowitsch       PetscCall(ISIntersect_Caching_Internal(facetIS, pointIS, &isectIS));
47029566063dSJacob Faibussowitsch       PetscCall(ISDestroy(&pointIS));
47033e9753d6SMatthew G. Knepley       pointIS = isectIS;
47043e9753d6SMatthew G. Knepley     }
47059566063dSJacob Faibussowitsch     PetscCall(ISGetLocalSize(pointIS, &numFaces));
47069566063dSJacob Faibussowitsch     PetscCall(ISGetIndices(pointIS, &points));
47079566063dSJacob Faibussowitsch     PetscCall(PetscMalloc4(numFaces * totDim, &u, locX_t ? numFaces * totDim : 0, &u_t, numFaces * totDim, &elemVec, locA ? numFaces * totDimAux : 0, &a));
47089566063dSJacob Faibussowitsch     PetscCall(DMFieldGetDegree(coordField, pointIS, NULL, &maxDegree));
470948a46eb9SPierre Jolivet     if (maxDegree <= 1) PetscCall(DMFieldCreateDefaultQuadrature(coordField, pointIS, &qGeom));
47103e9753d6SMatthew G. Knepley     if (!qGeom) {
47113e9753d6SMatthew G. Knepley       PetscFE fe;
47123e9753d6SMatthew G. Knepley 
47139566063dSJacob Faibussowitsch       PetscCall(PetscDSGetDiscretization(prob, key.field, (PetscObject *)&fe));
47149566063dSJacob Faibussowitsch       PetscCall(PetscFEGetFaceQuadrature(fe, &qGeom));
47159566063dSJacob Faibussowitsch       PetscCall(PetscObjectReference((PetscObject)qGeom));
47163e9753d6SMatthew G. Knepley     }
47179566063dSJacob Faibussowitsch     PetscCall(PetscQuadratureGetData(qGeom, NULL, NULL, &Nq, NULL, NULL));
47189566063dSJacob Faibussowitsch     PetscCall(DMSNESGetFEGeom(coordField, pointIS, qGeom, PETSC_TRUE, &fgeom));
47193e9753d6SMatthew G. Knepley     for (face = 0; face < numFaces; ++face) {
4720f15274beSMatthew Knepley       const PetscInt point = points[face], *support;
47213e9753d6SMatthew G. Knepley       PetscScalar   *x     = NULL;
4722f15274beSMatthew Knepley       PetscInt       i;
47233e9753d6SMatthew G. Knepley 
47249566063dSJacob Faibussowitsch       PetscCall(DMPlexGetSupport(dm, point, &support));
47259566063dSJacob Faibussowitsch       PetscCall(DMPlexVecGetClosure(plex, section, locX, support[0], NULL, &x));
47263e9753d6SMatthew G. Knepley       for (i = 0; i < totDim; ++i) u[face * totDim + i] = x[i];
47279566063dSJacob Faibussowitsch       PetscCall(DMPlexVecRestoreClosure(plex, section, locX, support[0], NULL, &x));
47283e9753d6SMatthew G. Knepley       if (locX_t) {
47299566063dSJacob Faibussowitsch         PetscCall(DMPlexVecGetClosure(plex, section, locX_t, support[0], NULL, &x));
47303e9753d6SMatthew G. Knepley         for (i = 0; i < totDim; ++i) u_t[face * totDim + i] = x[i];
47319566063dSJacob Faibussowitsch         PetscCall(DMPlexVecRestoreClosure(plex, section, locX_t, support[0], NULL, &x));
47323e9753d6SMatthew G. Knepley       }
47333e9753d6SMatthew G. Knepley       if (locA) {
47343e9753d6SMatthew G. Knepley         PetscInt subp;
47353e9753d6SMatthew G. Knepley 
47369566063dSJacob Faibussowitsch         PetscCall(DMGetEnclosurePoint(plexA, dm, encAux, support[0], &subp));
47379566063dSJacob Faibussowitsch         PetscCall(DMPlexVecGetClosure(plexA, sectionAux, locA, subp, NULL, &x));
47383e9753d6SMatthew G. Knepley         for (i = 0; i < totDimAux; ++i) a[face * totDimAux + i] = x[i];
47399566063dSJacob Faibussowitsch         PetscCall(DMPlexVecRestoreClosure(plexA, sectionAux, locA, subp, NULL, &x));
47403e9753d6SMatthew G. Knepley       }
47413e9753d6SMatthew G. Knepley     }
47429566063dSJacob Faibussowitsch     PetscCall(PetscArrayzero(elemVec, numFaces * totDim));
47433e9753d6SMatthew G. Knepley     {
47443e9753d6SMatthew G. Knepley       PetscFE      fe;
47453e9753d6SMatthew G. Knepley       PetscInt     Nb;
47463e9753d6SMatthew G. Knepley       PetscFEGeom *chunkGeom = NULL;
47473e9753d6SMatthew G. Knepley       /* Conforming batches */
47483e9753d6SMatthew G. Knepley       PetscInt numChunks, numBatches, numBlocks, Ne, blockSize, batchSize;
47493e9753d6SMatthew G. Knepley       /* Remainder */
47503e9753d6SMatthew G. Knepley       PetscInt Nr, offset;
47513e9753d6SMatthew G. Knepley 
47529566063dSJacob Faibussowitsch       PetscCall(PetscDSGetDiscretization(prob, key.field, (PetscObject *)&fe));
47539566063dSJacob Faibussowitsch       PetscCall(PetscFEGetDimension(fe, &Nb));
47549566063dSJacob Faibussowitsch       PetscCall(PetscFEGetTileSizes(fe, NULL, &numBlocks, NULL, &numBatches));
47553e9753d6SMatthew G. Knepley       /* TODO: documentation is unclear about what is going on with these numbers: how should Nb / Nq factor in ? */
47563e9753d6SMatthew G. Knepley       blockSize = Nb;
47573e9753d6SMatthew G. Knepley       batchSize = numBlocks * blockSize;
47589566063dSJacob Faibussowitsch       PetscCall(PetscFESetTileSizes(fe, blockSize, numBlocks, batchSize, numBatches));
47593e9753d6SMatthew G. Knepley       numChunks = numFaces / (numBatches * batchSize);
47603e9753d6SMatthew G. Knepley       Ne        = numChunks * numBatches * batchSize;
47613e9753d6SMatthew G. Knepley       Nr        = numFaces % (numBatches * batchSize);
47623e9753d6SMatthew G. Knepley       offset    = numFaces - Nr;
47639566063dSJacob Faibussowitsch       PetscCall(PetscFEGeomGetChunk(fgeom, 0, offset, &chunkGeom));
47649566063dSJacob Faibussowitsch       PetscCall(PetscFEIntegrateBdResidual(prob, wf, key, Ne, chunkGeom, u, u_t, probAux, a, t, elemVec));
47659566063dSJacob Faibussowitsch       PetscCall(PetscFEGeomRestoreChunk(fgeom, 0, offset, &chunkGeom));
47669566063dSJacob Faibussowitsch       PetscCall(PetscFEGeomGetChunk(fgeom, offset, numFaces, &chunkGeom));
47678e3a54c0SPierre Jolivet       PetscCall(PetscFEIntegrateBdResidual(prob, wf, key, Nr, chunkGeom, &u[offset * totDim], PetscSafePointerPlusOffset(u_t, offset * totDim), probAux, PetscSafePointerPlusOffset(a, offset * totDimAux), t, &elemVec[offset * totDim]));
47689566063dSJacob Faibussowitsch       PetscCall(PetscFEGeomRestoreChunk(fgeom, offset, numFaces, &chunkGeom));
47693e9753d6SMatthew G. Knepley     }
47703e9753d6SMatthew G. Knepley     for (face = 0; face < numFaces; ++face) {
47713e9753d6SMatthew G. Knepley       const PetscInt point = points[face], *support;
47723e9753d6SMatthew G. Knepley 
47739566063dSJacob Faibussowitsch       if (mesh->printFEM > 1) PetscCall(DMPrintCellVector(point, "BdResidual", totDim, &elemVec[face * totDim]));
47749566063dSJacob Faibussowitsch       PetscCall(DMPlexGetSupport(plex, point, &support));
47759566063dSJacob Faibussowitsch       PetscCall(DMPlexVecSetClosure(plex, NULL, locF, support[0], &elemVec[face * totDim], ADD_ALL_VALUES));
47763e9753d6SMatthew G. Knepley     }
47779566063dSJacob Faibussowitsch     PetscCall(DMSNESRestoreFEGeom(coordField, pointIS, qGeom, PETSC_TRUE, &fgeom));
47789566063dSJacob Faibussowitsch     PetscCall(PetscQuadratureDestroy(&qGeom));
47799566063dSJacob Faibussowitsch     PetscCall(ISRestoreIndices(pointIS, &points));
47809566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&pointIS));
47819566063dSJacob Faibussowitsch     PetscCall(PetscFree4(u, u_t, elemVec, a));
47823e9753d6SMatthew G. Knepley   }
47830c290148SMatthew G. Knepley end:
47849566063dSJacob Faibussowitsch   PetscCall(DMDestroy(&plex));
47859566063dSJacob Faibussowitsch   PetscCall(DMDestroy(&plexA));
47863ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
47873e9753d6SMatthew G. Knepley }
47883e9753d6SMatthew G. Knepley 
4789d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeBdResidualSingle(DM dm, PetscReal t, PetscWeakForm wf, PetscFormKey key, Vec locX, Vec locX_t, Vec locF)
4790d71ae5a4SJacob Faibussowitsch {
47913e9753d6SMatthew G. Knepley   DMField  coordField;
47923e9753d6SMatthew G. Knepley   DMLabel  depthLabel;
47933e9753d6SMatthew G. Knepley   IS       facetIS;
47943e9753d6SMatthew G. Knepley   PetscInt dim;
47953e9753d6SMatthew G. Knepley 
47963e9753d6SMatthew G. Knepley   PetscFunctionBegin;
47979566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dm, &dim));
47989566063dSJacob Faibussowitsch   PetscCall(DMPlexGetDepthLabel(dm, &depthLabel));
47999566063dSJacob Faibussowitsch   PetscCall(DMLabelGetStratumIS(depthLabel, dim - 1, &facetIS));
48009566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateField(dm, &coordField));
48019566063dSJacob Faibussowitsch   PetscCall(DMPlexComputeBdResidual_Single_Internal(dm, t, wf, key, locX, locX_t, locF, coordField, facetIS));
48029566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&facetIS));
48033ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
48043e9753d6SMatthew G. Knepley }
48053e9753d6SMatthew G. Knepley 
4806a4e35b19SJacob Faibussowitsch static PetscErrorCode DMPlexComputeBdResidual_Internal(DM dm, Vec locX, Vec locX_t, PetscReal t, Vec locF, void *user)
4807d71ae5a4SJacob Faibussowitsch {
48083e9753d6SMatthew G. Knepley   PetscDS  prob;
48093e9753d6SMatthew G. Knepley   PetscInt numBd, bd;
48103e9753d6SMatthew G. Knepley   DMField  coordField = NULL;
48113e9753d6SMatthew G. Knepley   IS       facetIS    = NULL;
48123e9753d6SMatthew G. Knepley   DMLabel  depthLabel;
48133e9753d6SMatthew G. Knepley   PetscInt dim;
48143e9753d6SMatthew G. Knepley 
48153e9753d6SMatthew G. Knepley   PetscFunctionBegin;
48169566063dSJacob Faibussowitsch   PetscCall(DMGetDS(dm, &prob));
48179566063dSJacob Faibussowitsch   PetscCall(DMPlexGetDepthLabel(dm, &depthLabel));
48189566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dm, &dim));
48199566063dSJacob Faibussowitsch   PetscCall(DMLabelGetStratumIS(depthLabel, dim - 1, &facetIS));
48209566063dSJacob Faibussowitsch   PetscCall(PetscDSGetNumBoundary(prob, &numBd));
48213e9753d6SMatthew G. Knepley   for (bd = 0; bd < numBd; ++bd) {
482245480ffeSMatthew G. Knepley     PetscWeakForm           wf;
48233e9753d6SMatthew G. Knepley     DMBoundaryConditionType type;
48243e9753d6SMatthew G. Knepley     DMLabel                 label;
48253e9753d6SMatthew G. Knepley     const PetscInt         *values;
48260c290148SMatthew G. Knepley     PetscInt                field, numValues, v;
48273e9753d6SMatthew G. Knepley     PetscObject             obj;
48283e9753d6SMatthew G. Knepley     PetscClassId            id;
48290c290148SMatthew G. Knepley     PetscFormKey            key;
48303e9753d6SMatthew G. Knepley 
48319566063dSJacob Faibussowitsch     PetscCall(PetscDSGetBoundary(prob, bd, &wf, &type, NULL, &label, &numValues, &values, &field, NULL, NULL, NULL, NULL, NULL));
48323d3e5d66SMatthew G. Knepley     if (type & DM_BC_ESSENTIAL) continue;
48339566063dSJacob Faibussowitsch     PetscCall(PetscDSGetDiscretization(prob, field, &obj));
48349566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetClassId(obj, &id));
48353d3e5d66SMatthew G. Knepley     if (id != PETSCFE_CLASSID) continue;
48363e9753d6SMatthew G. Knepley     if (!facetIS) {
48373e9753d6SMatthew G. Knepley       DMLabel  depthLabel;
48383e9753d6SMatthew G. Knepley       PetscInt dim;
48393e9753d6SMatthew G. Knepley 
48409566063dSJacob Faibussowitsch       PetscCall(DMPlexGetDepthLabel(dm, &depthLabel));
48419566063dSJacob Faibussowitsch       PetscCall(DMGetDimension(dm, &dim));
48429566063dSJacob Faibussowitsch       PetscCall(DMLabelGetStratumIS(depthLabel, dim - 1, &facetIS));
48433e9753d6SMatthew G. Knepley     }
48449566063dSJacob Faibussowitsch     PetscCall(DMGetCoordinateField(dm, &coordField));
48450c290148SMatthew G. Knepley     for (v = 0; v < numValues; ++v) {
48460c290148SMatthew G. Knepley       key.label = label;
48470c290148SMatthew G. Knepley       key.value = values[v];
48480c290148SMatthew G. Knepley       key.field = field;
48490c290148SMatthew G. Knepley       key.part  = 0;
48509566063dSJacob Faibussowitsch       PetscCall(DMPlexComputeBdResidual_Single_Internal(dm, t, wf, key, locX, locX_t, locF, coordField, facetIS));
48510c290148SMatthew G. Knepley     }
48523e9753d6SMatthew G. Knepley   }
48539566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&facetIS));
48543ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
48553e9753d6SMatthew G. Knepley }
48563e9753d6SMatthew G. Knepley 
4857d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeResidual_Internal(DM dm, PetscFormKey key, IS cellIS, PetscReal time, Vec locX, Vec locX_t, PetscReal t, Vec locF, void *user)
4858d71ae5a4SJacob Faibussowitsch {
48593e9753d6SMatthew G. Knepley   DM_Plex        *mesh       = (DM_Plex *)dm->data;
48603e9753d6SMatthew G. Knepley   const char     *name       = "Residual";
48613e9753d6SMatthew G. Knepley   DM              dmAux      = NULL;
48623e9753d6SMatthew G. Knepley   DM              dmGrad     = NULL;
48633e9753d6SMatthew G. Knepley   DMLabel         ghostLabel = NULL;
48646528b96dSMatthew G. Knepley   PetscDS         ds         = NULL;
48656528b96dSMatthew G. Knepley   PetscDS         dsAux      = NULL;
48663e9753d6SMatthew G. Knepley   PetscSection    section    = NULL;
48673e9753d6SMatthew G. Knepley   PetscBool       useFEM     = PETSC_FALSE;
48683e9753d6SMatthew G. Knepley   PetscBool       useFVM     = PETSC_FALSE;
48693e9753d6SMatthew G. Knepley   PetscBool       isImplicit = (locX_t || time == PETSC_MIN_REAL) ? PETSC_TRUE : PETSC_FALSE;
48703e9753d6SMatthew G. Knepley   PetscFV         fvm        = NULL;
48713e9753d6SMatthew G. Knepley   DMField         coordField = NULL;
48725962854dSMatthew G. Knepley   Vec             locA, cellGeometryFVM = NULL, faceGeometryFVM = NULL, locGrad = NULL;
48733e9753d6SMatthew G. Knepley   PetscScalar    *u = NULL, *u_t, *a, *uL, *uR;
48743e9753d6SMatthew G. Knepley   IS              chunkIS;
48753e9753d6SMatthew G. Knepley   const PetscInt *cells;
48763e9753d6SMatthew G. Knepley   PetscInt        cStart, cEnd, numCells;
48773e9753d6SMatthew G. Knepley   PetscInt        Nf, f, totDim, totDimAux, numChunks, cellChunkSize, faceChunkSize, chunk, fStart, fEnd;
48783e9753d6SMatthew G. Knepley   PetscInt        maxDegree  = PETSC_MAX_INT;
48793e9753d6SMatthew G. Knepley   PetscQuadrature affineQuad = NULL, *quads = NULL;
48803e9753d6SMatthew G. Knepley   PetscFEGeom    *affineGeom = NULL, **geoms = NULL;
48813e9753d6SMatthew G. Knepley 
48823e9753d6SMatthew G. Knepley   PetscFunctionBegin;
48839566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(DMPLEX_ResidualFEM, dm, 0, 0, 0));
48843cc88e6aSStefano Zampini   if (!cellIS) goto end;
48853cc88e6aSStefano Zampini   PetscCall(ISGetPointRange(cellIS, &cStart, &cEnd, &cells));
48863cc88e6aSStefano Zampini   if (cStart >= cEnd) goto end;
48873e9753d6SMatthew G. Knepley   /* TODO The places where we have to use isFE are probably the member functions for the PetscDisc class */
48883e9753d6SMatthew G. Knepley   /* TODO The FVM geometry is over-manipulated. Make the precalc functions return exactly what we need */
48893e9753d6SMatthew G. Knepley   /* FEM+FVM */
48909566063dSJacob Faibussowitsch   PetscCall(DMPlexGetHeightStratum(dm, 1, &fStart, &fEnd));
48913e9753d6SMatthew G. Knepley   /* 1: Get sizes from dm and dmAux */
48929566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dm, &section));
48939566063dSJacob Faibussowitsch   PetscCall(DMGetLabel(dm, "ghost", &ghostLabel));
489407218a29SMatthew G. Knepley   PetscCall(DMGetCellDS(dm, cells ? cells[cStart] : cStart, &ds, NULL));
48959566063dSJacob Faibussowitsch   PetscCall(PetscDSGetNumFields(ds, &Nf));
48969566063dSJacob Faibussowitsch   PetscCall(PetscDSGetTotalDimension(ds, &totDim));
48979566063dSJacob Faibussowitsch   PetscCall(DMGetAuxiliaryVec(dm, key.label, key.value, key.part, &locA));
48983e9753d6SMatthew G. Knepley   if (locA) {
48993e9753d6SMatthew G. Knepley     PetscInt subcell;
49009566063dSJacob Faibussowitsch     PetscCall(VecGetDM(locA, &dmAux));
49011059d808SMatthew G. Knepley     PetscCall(DMGetEnclosurePoint(dmAux, dm, DM_ENC_UNKNOWN, cells ? cells[cStart] : cStart, &subcell));
490207218a29SMatthew G. Knepley     PetscCall(DMGetCellDS(dmAux, subcell, &dsAux, NULL));
49039566063dSJacob Faibussowitsch     PetscCall(PetscDSGetTotalDimension(dsAux, &totDimAux));
49043e9753d6SMatthew G. Knepley   }
49053e9753d6SMatthew G. Knepley   /* 2: Get geometric data */
49063e9753d6SMatthew G. Knepley   for (f = 0; f < Nf; ++f) {
49073e9753d6SMatthew G. Knepley     PetscObject  obj;
49083e9753d6SMatthew G. Knepley     PetscClassId id;
49093e9753d6SMatthew G. Knepley     PetscBool    fimp;
49103e9753d6SMatthew G. Knepley 
49119566063dSJacob Faibussowitsch     PetscCall(PetscDSGetImplicit(ds, f, &fimp));
49123e9753d6SMatthew G. Knepley     if (isImplicit != fimp) continue;
49139566063dSJacob Faibussowitsch     PetscCall(PetscDSGetDiscretization(ds, f, &obj));
49149566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetClassId(obj, &id));
4915ad540459SPierre Jolivet     if (id == PETSCFE_CLASSID) useFEM = PETSC_TRUE;
49169371c9d4SSatish Balay     if (id == PETSCFV_CLASSID) {
49179371c9d4SSatish Balay       useFVM = PETSC_TRUE;
49189371c9d4SSatish Balay       fvm    = (PetscFV)obj;
49199371c9d4SSatish Balay     }
49203e9753d6SMatthew G. Knepley   }
49213e9753d6SMatthew G. Knepley   if (useFEM) {
49229566063dSJacob Faibussowitsch     PetscCall(DMGetCoordinateField(dm, &coordField));
49239566063dSJacob Faibussowitsch     PetscCall(DMFieldGetDegree(coordField, cellIS, NULL, &maxDegree));
49243e9753d6SMatthew G. Knepley     if (maxDegree <= 1) {
49259566063dSJacob Faibussowitsch       PetscCall(DMFieldCreateDefaultQuadrature(coordField, cellIS, &affineQuad));
492648a46eb9SPierre Jolivet       if (affineQuad) PetscCall(DMSNESGetFEGeom(coordField, cellIS, affineQuad, PETSC_FALSE, &affineGeom));
49273e9753d6SMatthew G. Knepley     } else {
49289566063dSJacob Faibussowitsch       PetscCall(PetscCalloc2(Nf, &quads, Nf, &geoms));
49293e9753d6SMatthew G. Knepley       for (f = 0; f < Nf; ++f) {
49303e9753d6SMatthew G. Knepley         PetscObject  obj;
49313e9753d6SMatthew G. Knepley         PetscClassId id;
49323e9753d6SMatthew G. Knepley         PetscBool    fimp;
49333e9753d6SMatthew G. Knepley 
49349566063dSJacob Faibussowitsch         PetscCall(PetscDSGetImplicit(ds, f, &fimp));
49353e9753d6SMatthew G. Knepley         if (isImplicit != fimp) continue;
49369566063dSJacob Faibussowitsch         PetscCall(PetscDSGetDiscretization(ds, f, &obj));
49379566063dSJacob Faibussowitsch         PetscCall(PetscObjectGetClassId(obj, &id));
49383e9753d6SMatthew G. Knepley         if (id == PETSCFE_CLASSID) {
49393e9753d6SMatthew G. Knepley           PetscFE fe = (PetscFE)obj;
49403e9753d6SMatthew G. Knepley 
49419566063dSJacob Faibussowitsch           PetscCall(PetscFEGetQuadrature(fe, &quads[f]));
49429566063dSJacob Faibussowitsch           PetscCall(PetscObjectReference((PetscObject)quads[f]));
49439566063dSJacob Faibussowitsch           PetscCall(DMSNESGetFEGeom(coordField, cellIS, quads[f], PETSC_FALSE, &geoms[f]));
49443e9753d6SMatthew G. Knepley         }
49453e9753d6SMatthew G. Knepley       }
49463e9753d6SMatthew G. Knepley     }
49473e9753d6SMatthew G. Knepley   }
49485962854dSMatthew G. Knepley   // Handle non-essential (e.g. outflow) boundary values
49493e9753d6SMatthew G. Knepley   if (useFVM) {
49505962854dSMatthew G. Knepley     PetscCall(DMPlexInsertBoundaryValuesFVM(dm, fvm, locX, time, &locGrad));
49519566063dSJacob Faibussowitsch     PetscCall(DMPlexGetGeometryFVM(dm, &faceGeometryFVM, &cellGeometryFVM, NULL));
49529566063dSJacob Faibussowitsch     PetscCall(DMPlexGetGradientDM(dm, fvm, &dmGrad));
49533e9753d6SMatthew G. Knepley   }
49543e9753d6SMatthew G. Knepley   /* Loop over chunks */
49559566063dSJacob Faibussowitsch   if (useFEM) PetscCall(ISCreate(PETSC_COMM_SELF, &chunkIS));
49563e9753d6SMatthew G. Knepley   numCells      = cEnd - cStart;
49573e9753d6SMatthew G. Knepley   numChunks     = 1;
49583e9753d6SMatthew G. Knepley   cellChunkSize = numCells / numChunks;
49593e9753d6SMatthew G. Knepley   faceChunkSize = (fEnd - fStart) / numChunks;
49603e9753d6SMatthew G. Knepley   numChunks     = PetscMin(1, numCells);
49613e9753d6SMatthew G. Knepley   for (chunk = 0; chunk < numChunks; ++chunk) {
49623e9753d6SMatthew G. Knepley     PetscScalar     *elemVec, *fluxL, *fluxR;
49633e9753d6SMatthew G. Knepley     PetscReal       *vol;
49643e9753d6SMatthew G. Knepley     PetscFVFaceGeom *fgeom;
49653e9753d6SMatthew G. Knepley     PetscInt         cS = cStart + chunk * cellChunkSize, cE = PetscMin(cS + cellChunkSize, cEnd), numCells = cE - cS, c;
49663e9753d6SMatthew G. Knepley     PetscInt         fS = fStart + chunk * faceChunkSize, fE = PetscMin(fS + faceChunkSize, fEnd), numFaces = 0, face;
49673e9753d6SMatthew G. Knepley 
49683e9753d6SMatthew G. Knepley     /* Extract field coefficients */
49693e9753d6SMatthew G. Knepley     if (useFEM) {
49709566063dSJacob Faibussowitsch       PetscCall(ISGetPointSubrange(chunkIS, cS, cE, cells));
49719566063dSJacob Faibussowitsch       PetscCall(DMPlexGetCellFields(dm, chunkIS, locX, locX_t, locA, &u, &u_t, &a));
49729566063dSJacob Faibussowitsch       PetscCall(DMGetWorkArray(dm, numCells * totDim, MPIU_SCALAR, &elemVec));
49739566063dSJacob Faibussowitsch       PetscCall(PetscArrayzero(elemVec, numCells * totDim));
49743e9753d6SMatthew G. Knepley     }
49753e9753d6SMatthew G. Knepley     if (useFVM) {
49769566063dSJacob Faibussowitsch       PetscCall(DMPlexGetFaceFields(dm, fS, fE, locX, locX_t, faceGeometryFVM, cellGeometryFVM, locGrad, &numFaces, &uL, &uR));
49779566063dSJacob Faibussowitsch       PetscCall(DMPlexGetFaceGeometry(dm, fS, fE, faceGeometryFVM, cellGeometryFVM, &numFaces, &fgeom, &vol));
49789566063dSJacob Faibussowitsch       PetscCall(DMGetWorkArray(dm, numFaces * totDim, MPIU_SCALAR, &fluxL));
49799566063dSJacob Faibussowitsch       PetscCall(DMGetWorkArray(dm, numFaces * totDim, MPIU_SCALAR, &fluxR));
49809566063dSJacob Faibussowitsch       PetscCall(PetscArrayzero(fluxL, numFaces * totDim));
49819566063dSJacob Faibussowitsch       PetscCall(PetscArrayzero(fluxR, numFaces * totDim));
49823e9753d6SMatthew G. Knepley     }
49833e9753d6SMatthew G. Knepley     /* TODO We will interlace both our field coefficients (u, u_t, uL, uR, etc.) and our output (elemVec, fL, fR). I think this works */
49843e9753d6SMatthew G. Knepley     /* Loop over fields */
49853e9753d6SMatthew G. Knepley     for (f = 0; f < Nf; ++f) {
49863e9753d6SMatthew G. Knepley       PetscObject  obj;
49873e9753d6SMatthew G. Knepley       PetscClassId id;
49883e9753d6SMatthew G. Knepley       PetscBool    fimp;
49893e9753d6SMatthew G. Knepley       PetscInt     numChunks, numBatches, batchSize, numBlocks, blockSize, Ne, Nr, offset;
49903e9753d6SMatthew G. Knepley 
49916528b96dSMatthew G. Knepley       key.field = f;
49929566063dSJacob Faibussowitsch       PetscCall(PetscDSGetImplicit(ds, f, &fimp));
49933e9753d6SMatthew G. Knepley       if (isImplicit != fimp) continue;
49949566063dSJacob Faibussowitsch       PetscCall(PetscDSGetDiscretization(ds, f, &obj));
49959566063dSJacob Faibussowitsch       PetscCall(PetscObjectGetClassId(obj, &id));
49963e9753d6SMatthew G. Knepley       if (id == PETSCFE_CLASSID) {
49973e9753d6SMatthew G. Knepley         PetscFE         fe        = (PetscFE)obj;
49983e9753d6SMatthew G. Knepley         PetscFEGeom    *geom      = affineGeom ? affineGeom : geoms[f];
49993e9753d6SMatthew G. Knepley         PetscFEGeom    *chunkGeom = NULL;
50003e9753d6SMatthew G. Knepley         PetscQuadrature quad      = affineQuad ? affineQuad : quads[f];
50013e9753d6SMatthew G. Knepley         PetscInt        Nq, Nb;
50023e9753d6SMatthew G. Knepley 
50039566063dSJacob Faibussowitsch         PetscCall(PetscFEGetTileSizes(fe, NULL, &numBlocks, NULL, &numBatches));
50049566063dSJacob Faibussowitsch         PetscCall(PetscQuadratureGetData(quad, NULL, NULL, &Nq, NULL, NULL));
50059566063dSJacob Faibussowitsch         PetscCall(PetscFEGetDimension(fe, &Nb));
50063e9753d6SMatthew G. Knepley         blockSize = Nb;
50073e9753d6SMatthew G. Knepley         batchSize = numBlocks * blockSize;
50089566063dSJacob Faibussowitsch         PetscCall(PetscFESetTileSizes(fe, blockSize, numBlocks, batchSize, numBatches));
50093e9753d6SMatthew G. Knepley         numChunks = numCells / (numBatches * batchSize);
50103e9753d6SMatthew G. Knepley         Ne        = numChunks * numBatches * batchSize;
50113e9753d6SMatthew G. Knepley         Nr        = numCells % (numBatches * batchSize);
50123e9753d6SMatthew G. Knepley         offset    = numCells - Nr;
50133e9753d6SMatthew G. Knepley         /* Integrate FE residual to get elemVec (need fields at quadrature points) */
50143e9753d6SMatthew G. Knepley         /*   For FV, I think we use a P0 basis and the cell coefficients (for subdivided cells, we can tweak the basis tabulation to be the indicator function) */
50159566063dSJacob Faibussowitsch         PetscCall(PetscFEGeomGetChunk(geom, 0, offset, &chunkGeom));
50169566063dSJacob Faibussowitsch         PetscCall(PetscFEIntegrateResidual(ds, key, Ne, chunkGeom, u, u_t, dsAux, a, t, elemVec));
50179566063dSJacob Faibussowitsch         PetscCall(PetscFEGeomGetChunk(geom, offset, numCells, &chunkGeom));
50188e3a54c0SPierre Jolivet         PetscCall(PetscFEIntegrateResidual(ds, key, Nr, chunkGeom, &u[offset * totDim], PetscSafePointerPlusOffset(u_t, offset * totDim), dsAux, PetscSafePointerPlusOffset(a, offset * totDimAux), t, &elemVec[offset * totDim]));
50199566063dSJacob Faibussowitsch         PetscCall(PetscFEGeomRestoreChunk(geom, offset, numCells, &chunkGeom));
50203e9753d6SMatthew G. Knepley       } else if (id == PETSCFV_CLASSID) {
50213e9753d6SMatthew G. Knepley         PetscFV fv = (PetscFV)obj;
50223e9753d6SMatthew G. Knepley 
50233e9753d6SMatthew G. Knepley         Ne = numFaces;
50243e9753d6SMatthew G. Knepley         /* Riemann solve over faces (need fields at face centroids) */
50253e9753d6SMatthew G. Knepley         /*   We need to evaluate FE fields at those coordinates */
50269566063dSJacob Faibussowitsch         PetscCall(PetscFVIntegrateRHSFunction(fv, ds, f, Ne, fgeom, vol, uL, uR, fluxL, fluxR));
502763a3b9bcSJacob Faibussowitsch       } else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, f);
50283e9753d6SMatthew G. Knepley     }
50293e9753d6SMatthew G. Knepley     /* Loop over domain */
50303e9753d6SMatthew G. Knepley     if (useFEM) {
50313e9753d6SMatthew G. Knepley       /* Add elemVec to locX */
50323e9753d6SMatthew G. Knepley       for (c = cS; c < cE; ++c) {
50333e9753d6SMatthew G. Knepley         const PetscInt cell = cells ? cells[c] : c;
50343e9753d6SMatthew G. Knepley         const PetscInt cind = c - cStart;
50353e9753d6SMatthew G. Knepley 
50369566063dSJacob Faibussowitsch         if (mesh->printFEM > 1) PetscCall(DMPrintCellVector(cell, name, totDim, &elemVec[cind * totDim]));
50373e9753d6SMatthew G. Knepley         if (ghostLabel) {
50383e9753d6SMatthew G. Knepley           PetscInt ghostVal;
50393e9753d6SMatthew G. Knepley 
50409566063dSJacob Faibussowitsch           PetscCall(DMLabelGetValue(ghostLabel, cell, &ghostVal));
50413e9753d6SMatthew G. Knepley           if (ghostVal > 0) continue;
50423e9753d6SMatthew G. Knepley         }
50439566063dSJacob Faibussowitsch         PetscCall(DMPlexVecSetClosure(dm, section, locF, cell, &elemVec[cind * totDim], ADD_ALL_VALUES));
50443e9753d6SMatthew G. Knepley       }
50453e9753d6SMatthew G. Knepley     }
50463e9753d6SMatthew G. Knepley     if (useFVM) {
50473e9753d6SMatthew G. Knepley       PetscScalar *fa;
50483e9753d6SMatthew G. Knepley       PetscInt     iface;
50493e9753d6SMatthew G. Knepley 
50509566063dSJacob Faibussowitsch       PetscCall(VecGetArray(locF, &fa));
50513e9753d6SMatthew G. Knepley       for (f = 0; f < Nf; ++f) {
50523e9753d6SMatthew G. Knepley         PetscFV      fv;
50533e9753d6SMatthew G. Knepley         PetscObject  obj;
50543e9753d6SMatthew G. Knepley         PetscClassId id;
50555962854dSMatthew G. Knepley         PetscInt     cdim, foff, pdim;
50563e9753d6SMatthew G. Knepley 
50575962854dSMatthew G. Knepley         PetscCall(DMGetCoordinateDim(dm, &cdim));
50589566063dSJacob Faibussowitsch         PetscCall(PetscDSGetDiscretization(ds, f, &obj));
50599566063dSJacob Faibussowitsch         PetscCall(PetscDSGetFieldOffset(ds, f, &foff));
50609566063dSJacob Faibussowitsch         PetscCall(PetscObjectGetClassId(obj, &id));
50613e9753d6SMatthew G. Knepley         if (id != PETSCFV_CLASSID) continue;
50623e9753d6SMatthew G. Knepley         fv = (PetscFV)obj;
50639566063dSJacob Faibussowitsch         PetscCall(PetscFVGetNumComponents(fv, &pdim));
50643e9753d6SMatthew G. Knepley         /* Accumulate fluxes to cells */
50653e9753d6SMatthew G. Knepley         for (face = fS, iface = 0; face < fE; ++face) {
50663e9753d6SMatthew G. Knepley           const PetscInt *scells;
50673e9753d6SMatthew G. Knepley           PetscScalar    *fL = NULL, *fR = NULL;
50683e9753d6SMatthew G. Knepley           PetscInt        ghost, d, nsupp, nchild;
50693e9753d6SMatthew G. Knepley 
50709566063dSJacob Faibussowitsch           PetscCall(DMLabelGetValue(ghostLabel, face, &ghost));
50719566063dSJacob Faibussowitsch           PetscCall(DMPlexGetSupportSize(dm, face, &nsupp));
50729566063dSJacob Faibussowitsch           PetscCall(DMPlexGetTreeChildren(dm, face, &nchild, NULL));
50733e9753d6SMatthew G. Knepley           if (ghost >= 0 || nsupp > 2 || nchild > 0) continue;
50749566063dSJacob Faibussowitsch           PetscCall(DMPlexGetSupport(dm, face, &scells));
50759566063dSJacob Faibussowitsch           PetscCall(DMLabelGetValue(ghostLabel, scells[0], &ghost));
50769566063dSJacob Faibussowitsch           if (ghost <= 0) PetscCall(DMPlexPointLocalFieldRef(dm, scells[0], f, fa, &fL));
50779566063dSJacob Faibussowitsch           PetscCall(DMLabelGetValue(ghostLabel, scells[1], &ghost));
50789566063dSJacob Faibussowitsch           if (ghost <= 0) PetscCall(DMPlexPointLocalFieldRef(dm, scells[1], f, fa, &fR));
50795962854dSMatthew G. Knepley           if (mesh->printFVM > 1) {
50805962854dSMatthew G. Knepley             PetscCall(DMPrintCellVectorReal(face, "Residual: normal", cdim, fgeom[iface].normal));
50815962854dSMatthew G. Knepley             PetscCall(DMPrintCellVector(face, "Residual: left state", pdim, &uL[iface * totDim + foff]));
50825962854dSMatthew G. Knepley             PetscCall(DMPrintCellVector(face, "Residual: right state", pdim, &uR[iface * totDim + foff]));
50835962854dSMatthew G. Knepley             PetscCall(DMPrintCellVector(face, "Residual: left flux", pdim, &fluxL[iface * totDim + foff]));
50845962854dSMatthew G. Knepley             PetscCall(DMPrintCellVector(face, "Residual: right flux", pdim, &fluxR[iface * totDim + foff]));
50855962854dSMatthew G. Knepley           }
50863e9753d6SMatthew G. Knepley           for (d = 0; d < pdim; ++d) {
50873e9753d6SMatthew G. Knepley             if (fL) fL[d] -= fluxL[iface * totDim + foff + d];
50883e9753d6SMatthew G. Knepley             if (fR) fR[d] += fluxR[iface * totDim + foff + d];
50893e9753d6SMatthew G. Knepley           }
50903e9753d6SMatthew G. Knepley           ++iface;
50913e9753d6SMatthew G. Knepley         }
50923e9753d6SMatthew G. Knepley       }
50939566063dSJacob Faibussowitsch       PetscCall(VecRestoreArray(locF, &fa));
50943e9753d6SMatthew G. Knepley     }
50953e9753d6SMatthew G. Knepley     /* Handle time derivative */
50963e9753d6SMatthew G. Knepley     if (locX_t) {
50973e9753d6SMatthew G. Knepley       PetscScalar *x_t, *fa;
50983e9753d6SMatthew G. Knepley 
50999566063dSJacob Faibussowitsch       PetscCall(VecGetArray(locF, &fa));
51009566063dSJacob Faibussowitsch       PetscCall(VecGetArray(locX_t, &x_t));
51013e9753d6SMatthew G. Knepley       for (f = 0; f < Nf; ++f) {
51023e9753d6SMatthew G. Knepley         PetscFV      fv;
51033e9753d6SMatthew G. Knepley         PetscObject  obj;
51043e9753d6SMatthew G. Knepley         PetscClassId id;
51053e9753d6SMatthew G. Knepley         PetscInt     pdim, d;
51063e9753d6SMatthew G. Knepley 
51079566063dSJacob Faibussowitsch         PetscCall(PetscDSGetDiscretization(ds, f, &obj));
51089566063dSJacob Faibussowitsch         PetscCall(PetscObjectGetClassId(obj, &id));
51093e9753d6SMatthew G. Knepley         if (id != PETSCFV_CLASSID) continue;
51103e9753d6SMatthew G. Knepley         fv = (PetscFV)obj;
51119566063dSJacob Faibussowitsch         PetscCall(PetscFVGetNumComponents(fv, &pdim));
51123e9753d6SMatthew G. Knepley         for (c = cS; c < cE; ++c) {
51133e9753d6SMatthew G. Knepley           const PetscInt cell = cells ? cells[c] : c;
51143e9753d6SMatthew G. Knepley           PetscScalar   *u_t, *r;
51153e9753d6SMatthew G. Knepley 
51163e9753d6SMatthew G. Knepley           if (ghostLabel) {
51173e9753d6SMatthew G. Knepley             PetscInt ghostVal;
51183e9753d6SMatthew G. Knepley 
51199566063dSJacob Faibussowitsch             PetscCall(DMLabelGetValue(ghostLabel, cell, &ghostVal));
51203e9753d6SMatthew G. Knepley             if (ghostVal > 0) continue;
51213e9753d6SMatthew G. Knepley           }
51229566063dSJacob Faibussowitsch           PetscCall(DMPlexPointLocalFieldRead(dm, cell, f, x_t, &u_t));
51239566063dSJacob Faibussowitsch           PetscCall(DMPlexPointLocalFieldRef(dm, cell, f, fa, &r));
51243e9753d6SMatthew G. Knepley           for (d = 0; d < pdim; ++d) r[d] += u_t[d];
51253e9753d6SMatthew G. Knepley         }
51263e9753d6SMatthew G. Knepley       }
51279566063dSJacob Faibussowitsch       PetscCall(VecRestoreArray(locX_t, &x_t));
51289566063dSJacob Faibussowitsch       PetscCall(VecRestoreArray(locF, &fa));
51293e9753d6SMatthew G. Knepley     }
51303e9753d6SMatthew G. Knepley     if (useFEM) {
51319566063dSJacob Faibussowitsch       PetscCall(DMPlexRestoreCellFields(dm, chunkIS, locX, locX_t, locA, &u, &u_t, &a));
51329566063dSJacob Faibussowitsch       PetscCall(DMRestoreWorkArray(dm, numCells * totDim, MPIU_SCALAR, &elemVec));
51333e9753d6SMatthew G. Knepley     }
51343e9753d6SMatthew G. Knepley     if (useFVM) {
51359566063dSJacob Faibussowitsch       PetscCall(DMPlexRestoreFaceFields(dm, fS, fE, locX, locX_t, faceGeometryFVM, cellGeometryFVM, locGrad, &numFaces, &uL, &uR));
51369566063dSJacob Faibussowitsch       PetscCall(DMPlexRestoreFaceGeometry(dm, fS, fE, faceGeometryFVM, cellGeometryFVM, &numFaces, &fgeom, &vol));
51379566063dSJacob Faibussowitsch       PetscCall(DMRestoreWorkArray(dm, numFaces * totDim, MPIU_SCALAR, &fluxL));
51389566063dSJacob Faibussowitsch       PetscCall(DMRestoreWorkArray(dm, numFaces * totDim, MPIU_SCALAR, &fluxR));
51399566063dSJacob Faibussowitsch       if (dmGrad) PetscCall(DMRestoreLocalVector(dmGrad, &locGrad));
51403e9753d6SMatthew G. Knepley     }
51413e9753d6SMatthew G. Knepley   }
51429566063dSJacob Faibussowitsch   if (useFEM) PetscCall(ISDestroy(&chunkIS));
51439566063dSJacob Faibussowitsch   PetscCall(ISRestorePointRange(cellIS, &cStart, &cEnd, &cells));
51443e9753d6SMatthew G. Knepley 
51453e9753d6SMatthew G. Knepley   if (useFEM) {
51469566063dSJacob Faibussowitsch     PetscCall(DMPlexComputeBdResidual_Internal(dm, locX, locX_t, t, locF, user));
51473e9753d6SMatthew G. Knepley 
51483e9753d6SMatthew G. Knepley     if (maxDegree <= 1) {
51499566063dSJacob Faibussowitsch       PetscCall(DMSNESRestoreFEGeom(coordField, cellIS, affineQuad, PETSC_FALSE, &affineGeom));
51509566063dSJacob Faibussowitsch       PetscCall(PetscQuadratureDestroy(&affineQuad));
51513e9753d6SMatthew G. Knepley     } else {
51523e9753d6SMatthew G. Knepley       for (f = 0; f < Nf; ++f) {
51539566063dSJacob Faibussowitsch         PetscCall(DMSNESRestoreFEGeom(coordField, cellIS, quads[f], PETSC_FALSE, &geoms[f]));
51549566063dSJacob Faibussowitsch         PetscCall(PetscQuadratureDestroy(&quads[f]));
51553e9753d6SMatthew G. Knepley       }
51569566063dSJacob Faibussowitsch       PetscCall(PetscFree2(quads, geoms));
51573e9753d6SMatthew G. Knepley     }
51583e9753d6SMatthew G. Knepley   }
51593e9753d6SMatthew G. Knepley 
51603e9753d6SMatthew G. Knepley   /* FEM */
51613e9753d6SMatthew G. Knepley   /* 1: Get sizes from dm and dmAux */
51623e9753d6SMatthew G. Knepley   /* 2: Get geometric data */
51633e9753d6SMatthew G. Knepley   /* 3: Handle boundary values */
51643e9753d6SMatthew G. Knepley   /* 4: Loop over domain */
51653e9753d6SMatthew G. Knepley   /*   Extract coefficients */
51663e9753d6SMatthew G. Knepley   /* Loop over fields */
51673e9753d6SMatthew G. Knepley   /*   Set tiling for FE*/
51683e9753d6SMatthew G. Knepley   /*   Integrate FE residual to get elemVec */
51693e9753d6SMatthew G. Knepley   /*     Loop over subdomain */
51703e9753d6SMatthew G. Knepley   /*       Loop over quad points */
51713e9753d6SMatthew G. Knepley   /*         Transform coords to real space */
51723e9753d6SMatthew G. Knepley   /*         Evaluate field and aux fields at point */
51733e9753d6SMatthew G. Knepley   /*         Evaluate residual at point */
51743e9753d6SMatthew G. Knepley   /*         Transform residual to real space */
51753e9753d6SMatthew G. Knepley   /*       Add residual to elemVec */
51763e9753d6SMatthew G. Knepley   /* Loop over domain */
51773e9753d6SMatthew G. Knepley   /*   Add elemVec to locX */
51783e9753d6SMatthew G. Knepley 
51793e9753d6SMatthew G. Knepley   /* FVM */
51803e9753d6SMatthew G. Knepley   /* Get geometric data */
51813e9753d6SMatthew G. Knepley   /* If using gradients */
51823e9753d6SMatthew G. Knepley   /*   Compute gradient data */
51833e9753d6SMatthew G. Knepley   /*   Loop over domain faces */
51843e9753d6SMatthew G. Knepley   /*     Count computational faces */
51853e9753d6SMatthew G. Knepley   /*     Reconstruct cell gradient */
51863e9753d6SMatthew G. Knepley   /*   Loop over domain cells */
51873e9753d6SMatthew G. Knepley   /*     Limit cell gradients */
51883e9753d6SMatthew G. Knepley   /* Handle boundary values */
51893e9753d6SMatthew G. Knepley   /* Loop over domain faces */
51903e9753d6SMatthew G. Knepley   /*   Read out field, centroid, normal, volume for each side of face */
51913e9753d6SMatthew G. Knepley   /* Riemann solve over faces */
51923e9753d6SMatthew G. Knepley   /* Loop over domain faces */
51933e9753d6SMatthew G. Knepley   /*   Accumulate fluxes to cells */
51943e9753d6SMatthew G. Knepley   /* TODO Change printFEM to printDisc here */
51953e9753d6SMatthew G. Knepley   if (mesh->printFEM) {
51963e9753d6SMatthew G. Knepley     Vec          locFbc;
51973e9753d6SMatthew G. Knepley     PetscInt     pStart, pEnd, p, maxDof;
51983e9753d6SMatthew G. Knepley     PetscScalar *zeroes;
51993e9753d6SMatthew G. Knepley 
52009566063dSJacob Faibussowitsch     PetscCall(VecDuplicate(locF, &locFbc));
52019566063dSJacob Faibussowitsch     PetscCall(VecCopy(locF, locFbc));
52029566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetChart(section, &pStart, &pEnd));
52039566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetMaxDof(section, &maxDof));
52049566063dSJacob Faibussowitsch     PetscCall(PetscCalloc1(maxDof, &zeroes));
520548a46eb9SPierre Jolivet     for (p = pStart; p < pEnd; p++) PetscCall(VecSetValuesSection(locFbc, section, p, zeroes, INSERT_BC_VALUES));
52069566063dSJacob Faibussowitsch     PetscCall(PetscFree(zeroes));
52079566063dSJacob Faibussowitsch     PetscCall(DMPrintLocalVec(dm, name, mesh->printTol, locFbc));
52089566063dSJacob Faibussowitsch     PetscCall(VecDestroy(&locFbc));
52093e9753d6SMatthew G. Knepley   }
52103cc88e6aSStefano Zampini end:
52119566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(DMPLEX_ResidualFEM, dm, 0, 0, 0));
52123ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
52133e9753d6SMatthew G. Knepley }
52143e9753d6SMatthew G. Knepley 
52156528b96dSMatthew G. Knepley /*
52166528b96dSMatthew G. Knepley   1) Allow multiple kernels for BdResidual for hybrid DS
52176528b96dSMatthew G. Knepley 
52186528b96dSMatthew G. Knepley   DONE 2) Get out dsAux for either side at the same time as cohesive cell dsAux
52196528b96dSMatthew G. Knepley 
52206528b96dSMatthew G. Knepley   DONE 3) Change DMGetCellFields() to get different aux data a[] for each side
52216528b96dSMatthew G. Knepley      - I think I just need to replace a[] with the closure from each face
52226528b96dSMatthew G. Knepley 
52236528b96dSMatthew G. Knepley   4) Run both kernels for each non-hybrid field with correct dsAux, and then hybrid field as before
52246528b96dSMatthew G. Knepley */
5225d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeResidual_Hybrid_Internal(DM dm, PetscFormKey key[], IS cellIS, PetscReal time, Vec locX, Vec locX_t, PetscReal t, Vec locF, void *user)
5226d71ae5a4SJacob Faibussowitsch {
52273e9753d6SMatthew G. Knepley   DM_Plex        *mesh       = (DM_Plex *)dm->data;
52283e9753d6SMatthew G. Knepley   const char     *name       = "Hybrid Residual";
522904c51a94SMatthew G. Knepley   DM              dmAux[3]   = {NULL, NULL, NULL};
52303e9753d6SMatthew G. Knepley   DMLabel         ghostLabel = NULL;
52316528b96dSMatthew G. Knepley   PetscDS         ds         = NULL;
523207218a29SMatthew G. Knepley   PetscDS         dsIn       = NULL;
52336528b96dSMatthew G. Knepley   PetscDS         dsAux[3]   = {NULL, NULL, NULL};
523404c51a94SMatthew G. Knepley   Vec             locA[3]    = {NULL, NULL, NULL};
523507218a29SMatthew G. Knepley   DM              dmScale[3] = {NULL, NULL, NULL};
523607218a29SMatthew G. Knepley   PetscDS         dsScale[3] = {NULL, NULL, NULL};
523707218a29SMatthew G. Knepley   Vec             locS[3]    = {NULL, NULL, NULL};
52383e9753d6SMatthew G. Knepley   PetscSection    section    = NULL;
52393e9753d6SMatthew G. Knepley   DMField         coordField = NULL;
524007218a29SMatthew G. Knepley   PetscScalar    *a[3]       = {NULL, NULL, NULL};
524107218a29SMatthew G. Knepley   PetscScalar    *s[3]       = {NULL, NULL, NULL};
5242b2ab40e6SMatthew G. Knepley   PetscScalar    *u          = NULL, *u_t;
524307218a29SMatthew G. Knepley   PetscScalar    *elemVecNeg, *elemVecPos, *elemVecCoh;
52443e9753d6SMatthew G. Knepley   IS              chunkIS;
52453e9753d6SMatthew G. Knepley   const PetscInt *cells;
52463e9753d6SMatthew G. Knepley   PetscInt       *faces;
52473e9753d6SMatthew G. Knepley   PetscInt        cStart, cEnd, numCells;
52483e2b0218SMatthew G. Knepley   PetscInt        Nf, f, totDim, totDimIn, totDimAux[3], totDimScale[3], numChunks, cellChunkSize, chunk;
52493e9753d6SMatthew G. Knepley   PetscInt        maxDegree  = PETSC_MAX_INT;
52503e9753d6SMatthew G. Knepley   PetscQuadrature affineQuad = NULL, *quads = NULL;
52513e9753d6SMatthew G. Knepley   PetscFEGeom    *affineGeom = NULL, **geoms = NULL;
52523e9753d6SMatthew G. Knepley 
52533e9753d6SMatthew G. Knepley   PetscFunctionBegin;
52543cc88e6aSStefano Zampini   PetscCall(PetscLogEventBegin(DMPLEX_ResidualFEM, dm, 0, 0, 0));
52553cc88e6aSStefano Zampini   if (!cellIS) goto end;
5256437e83fbSMatthew G. Knepley   PetscCall(ISGetPointRange(cellIS, &cStart, &cEnd, &cells));
5257437e83fbSMatthew G. Knepley   PetscCall(ISGetLocalSize(cellIS, &numCells));
52583cc88e6aSStefano Zampini   if (cStart >= cEnd) goto end;
52595fedec97SMatthew G. Knepley   if ((key[0].label == key[1].label) && (key[0].value == key[1].value) && (key[0].part == key[1].part)) {
52605fedec97SMatthew G. Knepley     const char *name;
52619566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetName((PetscObject)key[0].label, &name));
526263a3b9bcSJacob Faibussowitsch     SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Form keys for each side of a cohesive surface must be different (%s, %" PetscInt_FMT ", %" PetscInt_FMT ")", name, key[0].value, key[0].part);
52635fedec97SMatthew G. Knepley   }
52643e9753d6SMatthew G. Knepley   /* TODO The places where we have to use isFE are probably the member functions for the PetscDisc class */
52653e9753d6SMatthew G. Knepley   /* FEM */
52663e9753d6SMatthew G. Knepley   /* 1: Get sizes from dm and dmAux */
52679566063dSJacob Faibussowitsch   PetscCall(DMGetSection(dm, &section));
52689566063dSJacob Faibussowitsch   PetscCall(DMGetLabel(dm, "ghost", &ghostLabel));
526907218a29SMatthew G. Knepley   PetscCall(DMGetCellDS(dm, cells ? cells[cStart] : cStart, &ds, &dsIn));
52709566063dSJacob Faibussowitsch   PetscCall(PetscDSGetNumFields(ds, &Nf));
52719566063dSJacob Faibussowitsch   PetscCall(PetscDSGetTotalDimension(ds, &totDim));
527207218a29SMatthew G. Knepley   PetscCall(PetscDSGetTotalDimension(dsIn, &totDimIn));
52739566063dSJacob Faibussowitsch   PetscCall(DMGetAuxiliaryVec(dm, key[2].label, key[2].value, key[2].part, &locA[2]));
527404c51a94SMatthew G. Knepley   if (locA[2]) {
52751059d808SMatthew G. Knepley     const PetscInt cellStart = cells ? cells[cStart] : cStart;
52761059d808SMatthew G. Knepley 
52779566063dSJacob Faibussowitsch     PetscCall(VecGetDM(locA[2], &dmAux[2]));
527807218a29SMatthew G. Knepley     PetscCall(DMGetCellDS(dmAux[2], cellStart, &dsAux[2], NULL));
52799566063dSJacob Faibussowitsch     PetscCall(PetscDSGetTotalDimension(dsAux[2], &totDimAux[2]));
52806528b96dSMatthew G. Knepley     {
52816528b96dSMatthew G. Knepley       const PetscInt *cone;
52826528b96dSMatthew G. Knepley       PetscInt        c;
52836528b96dSMatthew G. Knepley 
52841059d808SMatthew G. Knepley       PetscCall(DMPlexGetCone(dm, cellStart, &cone));
52856528b96dSMatthew G. Knepley       for (c = 0; c < 2; ++c) {
52866528b96dSMatthew G. Knepley         const PetscInt *support;
52876528b96dSMatthew G. Knepley         PetscInt        ssize, s;
52886528b96dSMatthew G. Knepley 
52899566063dSJacob Faibussowitsch         PetscCall(DMPlexGetSupport(dm, cone[c], &support));
52909566063dSJacob Faibussowitsch         PetscCall(DMPlexGetSupportSize(dm, cone[c], &ssize));
52911059d808SMatthew G. Knepley         PetscCheck(ssize == 2, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Face %" PetscInt_FMT " from cell %" PetscInt_FMT " has support size %" PetscInt_FMT " != 2", cone[c], cellStart, ssize);
52921059d808SMatthew G. Knepley         if (support[0] == cellStart) s = 1;
52931059d808SMatthew G. Knepley         else if (support[1] == cellStart) s = 0;
52941059d808SMatthew G. Knepley         else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Face %" PetscInt_FMT " does not have cell %" PetscInt_FMT " in its support", cone[c], cellStart);
52959566063dSJacob Faibussowitsch         PetscCall(DMGetAuxiliaryVec(dm, key[c].label, key[c].value, key[c].part, &locA[c]));
5296c75bfeddSPierre Jolivet         PetscCheck(locA[c], PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Must have auxiliary vector for (%p, %" PetscInt_FMT ", %" PetscInt_FMT ")", (void *)key[c].label, key[c].value, key[c].part);
52979566063dSJacob Faibussowitsch         if (locA[c]) PetscCall(VecGetDM(locA[c], &dmAux[c]));
5298ad540459SPierre Jolivet         else dmAux[c] = dmAux[2];
529907218a29SMatthew G. Knepley         PetscCall(DMGetCellDS(dmAux[c], support[s], &dsAux[c], NULL));
53009566063dSJacob Faibussowitsch         PetscCall(PetscDSGetTotalDimension(dsAux[c], &totDimAux[c]));
53016528b96dSMatthew G. Knepley       }
53026528b96dSMatthew G. Knepley     }
53033e9753d6SMatthew G. Knepley   }
530407218a29SMatthew G. Knepley   /* Handle mass matrix scaling
530507218a29SMatthew G. Knepley        The field in key[2] is the field to be scaled, and the scaling field is the first in the dsScale */
530607218a29SMatthew G. Knepley   PetscCall(DMGetAuxiliaryVec(dm, key[2].label, -key[2].value, key[2].part, &locS[2]));
530707218a29SMatthew G. Knepley   if (locS[2]) {
53083e2b0218SMatthew G. Knepley     const PetscInt cellStart = cells ? cells[cStart] : cStart;
530907218a29SMatthew G. Knepley     PetscInt       Nb, Nbs;
531007218a29SMatthew G. Knepley 
531107218a29SMatthew G. Knepley     PetscCall(VecGetDM(locS[2], &dmScale[2]));
53123e2b0218SMatthew G. Knepley     PetscCall(DMGetCellDS(dmScale[2], cellStart, &dsScale[2], NULL));
53133e2b0218SMatthew G. Knepley     PetscCall(PetscDSGetTotalDimension(dsScale[2], &totDimScale[2]));
531407218a29SMatthew G. Knepley     // BRAD: This is not set correctly
531507218a29SMatthew G. Knepley     key[2].field = 2;
531607218a29SMatthew G. Knepley     PetscCall(PetscDSGetFieldSize(ds, key[2].field, &Nb));
531707218a29SMatthew G. Knepley     PetscCall(PetscDSGetFieldSize(dsScale[2], 0, &Nbs));
531807218a29SMatthew G. Knepley     PetscCheck(Nb == Nbs, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "Field %" PetscInt_FMT " of size %" PetscInt_FMT " cannot be scaled by field of size %" PetscInt_FMT, key[2].field, Nb, Nbs);
53193e2b0218SMatthew G. Knepley     {
53203e2b0218SMatthew G. Knepley       const PetscInt *cone;
53213e2b0218SMatthew G. Knepley       PetscInt        c;
53223e2b0218SMatthew G. Knepley 
53233e2b0218SMatthew G. Knepley       locS[1] = locS[0] = locS[2];
53243e2b0218SMatthew G. Knepley       dmScale[1] = dmScale[0] = dmScale[2];
53253e2b0218SMatthew G. Knepley       PetscCall(DMPlexGetCone(dm, cellStart, &cone));
53263e2b0218SMatthew G. Knepley       for (c = 0; c < 2; ++c) {
53273e2b0218SMatthew G. Knepley         const PetscInt *support;
53283e2b0218SMatthew G. Knepley         PetscInt        ssize, s;
53293e2b0218SMatthew G. Knepley 
53303e2b0218SMatthew G. Knepley         PetscCall(DMPlexGetSupport(dm, cone[c], &support));
53313e2b0218SMatthew G. Knepley         PetscCall(DMPlexGetSupportSize(dm, cone[c], &ssize));
53323e2b0218SMatthew G. Knepley         PetscCheck(ssize == 2, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Face %" PetscInt_FMT " from cell %" PetscInt_FMT " has support size %" PetscInt_FMT " != 2", cone[c], cellStart, ssize);
53333e2b0218SMatthew G. Knepley         if (support[0] == cellStart) s = 1;
53343e2b0218SMatthew G. Knepley         else if (support[1] == cellStart) s = 0;
53353e2b0218SMatthew G. Knepley         else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Face %" PetscInt_FMT " does not have cell %" PetscInt_FMT " in its support", cone[c], cellStart);
53363e2b0218SMatthew G. Knepley         PetscCall(DMGetCellDS(dmScale[c], support[s], &dsScale[c], NULL));
53373e2b0218SMatthew G. Knepley         PetscCall(PetscDSGetTotalDimension(dsScale[c], &totDimScale[c]));
53383e2b0218SMatthew G. Knepley       }
53393e2b0218SMatthew G. Knepley     }
534007218a29SMatthew G. Knepley   }
53413e9753d6SMatthew G. Knepley   /* 2: Setup geometric data */
53429566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateField(dm, &coordField));
53439566063dSJacob Faibussowitsch   PetscCall(DMFieldGetDegree(coordField, cellIS, NULL, &maxDegree));
53443e9753d6SMatthew G. Knepley   if (maxDegree > 1) {
53459566063dSJacob Faibussowitsch     PetscCall(PetscCalloc2(Nf, &quads, Nf, &geoms));
53463e9753d6SMatthew G. Knepley     for (f = 0; f < Nf; ++f) {
53473e9753d6SMatthew G. Knepley       PetscFE fe;
53483e9753d6SMatthew G. Knepley 
53499566063dSJacob Faibussowitsch       PetscCall(PetscDSGetDiscretization(ds, f, (PetscObject *)&fe));
53503e9753d6SMatthew G. Knepley       if (fe) {
53519566063dSJacob Faibussowitsch         PetscCall(PetscFEGetQuadrature(fe, &quads[f]));
53529566063dSJacob Faibussowitsch         PetscCall(PetscObjectReference((PetscObject)quads[f]));
53533e9753d6SMatthew G. Knepley       }
53543e9753d6SMatthew G. Knepley     }
53553e9753d6SMatthew G. Knepley   }
53563e9753d6SMatthew G. Knepley   /* Loop over chunks */
53573e9753d6SMatthew G. Knepley   cellChunkSize = numCells;
53583e9753d6SMatthew G. Knepley   numChunks     = !numCells ? 0 : PetscCeilReal(((PetscReal)numCells) / cellChunkSize);
535907218a29SMatthew G. Knepley   PetscCall(PetscCalloc1(2 * cellChunkSize, &faces));
536007218a29SMatthew G. Knepley   PetscCall(ISCreateGeneral(PETSC_COMM_SELF, 2 * cellChunkSize, faces, PETSC_USE_POINTER, &chunkIS));
53613e9753d6SMatthew G. Knepley   /* Extract field coefficients */
53623e9753d6SMatthew G. Knepley   /* NOTE This needs the end cap faces to have identical orientations */
536307218a29SMatthew G. Knepley   PetscCall(DMPlexGetHybridCellFields(dm, cellIS, locX, locX_t, locA[2], &u, &u_t, &a[2]));
536407218a29SMatthew G. Knepley   PetscCall(DMPlexGetHybridFields(dm, dmAux, dsAux, cellIS, locA, PETSC_TRUE, a));
53653e2b0218SMatthew G. Knepley   PetscCall(DMPlexGetHybridFields(dm, dmScale, dsScale, cellIS, locS, PETSC_TRUE, s));
536607218a29SMatthew G. Knepley   PetscCall(DMGetWorkArray(dm, cellChunkSize * totDim, MPIU_SCALAR, &elemVecNeg));
536707218a29SMatthew G. Knepley   PetscCall(DMGetWorkArray(dm, cellChunkSize * totDim, MPIU_SCALAR, &elemVecPos));
536807218a29SMatthew G. Knepley   PetscCall(DMGetWorkArray(dm, cellChunkSize * totDim, MPIU_SCALAR, &elemVecCoh));
53693e9753d6SMatthew G. Knepley   for (chunk = 0; chunk < numChunks; ++chunk) {
53703e9753d6SMatthew G. Knepley     PetscInt cS = cStart + chunk * cellChunkSize, cE = PetscMin(cS + cellChunkSize, cEnd), numCells = cE - cS, c;
53713e9753d6SMatthew G. Knepley 
537207218a29SMatthew G. Knepley     PetscCall(PetscArrayzero(elemVecNeg, cellChunkSize * totDim));
537307218a29SMatthew G. Knepley     PetscCall(PetscArrayzero(elemVecPos, cellChunkSize * totDim));
537407218a29SMatthew G. Knepley     PetscCall(PetscArrayzero(elemVecCoh, cellChunkSize * totDim));
53753e9753d6SMatthew G. Knepley     /* Get faces */
53763e9753d6SMatthew G. Knepley     for (c = cS; c < cE; ++c) {
53773e9753d6SMatthew G. Knepley       const PetscInt  cell = cells ? cells[c] : c;
53783e9753d6SMatthew G. Knepley       const PetscInt *cone;
53799566063dSJacob Faibussowitsch       PetscCall(DMPlexGetCone(dm, cell, &cone));
538007218a29SMatthew G. Knepley       faces[(c - cS) * 2 + 0] = cone[0];
538107218a29SMatthew G. Knepley       faces[(c - cS) * 2 + 1] = cone[1];
53823e9753d6SMatthew G. Knepley     }
538307218a29SMatthew G. Knepley     PetscCall(ISGeneralSetIndices(chunkIS, 2 * cellChunkSize, faces, PETSC_USE_POINTER));
53843e9753d6SMatthew G. Knepley     /* Get geometric data */
53853e9753d6SMatthew G. Knepley     if (maxDegree <= 1) {
53869566063dSJacob Faibussowitsch       if (!affineQuad) PetscCall(DMFieldCreateDefaultQuadrature(coordField, chunkIS, &affineQuad));
53879566063dSJacob Faibussowitsch       if (affineQuad) PetscCall(DMSNESGetFEGeom(coordField, chunkIS, affineQuad, PETSC_TRUE, &affineGeom));
53883e9753d6SMatthew G. Knepley     } else {
53893e9753d6SMatthew G. Knepley       for (f = 0; f < Nf; ++f) {
53909566063dSJacob Faibussowitsch         if (quads[f]) PetscCall(DMSNESGetFEGeom(coordField, chunkIS, quads[f], PETSC_TRUE, &geoms[f]));
53913e9753d6SMatthew G. Knepley       }
53923e9753d6SMatthew G. Knepley     }
53933e9753d6SMatthew G. Knepley     /* Loop over fields */
53943e9753d6SMatthew G. Knepley     for (f = 0; f < Nf; ++f) {
53953e9753d6SMatthew G. Knepley       PetscFE         fe;
53963e9753d6SMatthew G. Knepley       PetscFEGeom    *geom      = affineGeom ? affineGeom : geoms[f];
5397148442b3SMatthew G. Knepley       PetscFEGeom    *chunkGeom = NULL, *remGeom = NULL;
53983e9753d6SMatthew G. Knepley       PetscQuadrature quad = affineQuad ? affineQuad : quads[f];
53993e9753d6SMatthew G. Knepley       PetscInt        numChunks, numBatches, batchSize, numBlocks, blockSize, Ne, Nr, offset, Nq, Nb;
54005fedec97SMatthew G. Knepley       PetscBool       isCohesiveField;
54013e9753d6SMatthew G. Knepley 
54029566063dSJacob Faibussowitsch       PetscCall(PetscDSGetDiscretization(ds, f, (PetscObject *)&fe));
54033e9753d6SMatthew G. Knepley       if (!fe) continue;
54049566063dSJacob Faibussowitsch       PetscCall(PetscFEGetTileSizes(fe, NULL, &numBlocks, NULL, &numBatches));
54059566063dSJacob Faibussowitsch       PetscCall(PetscQuadratureGetData(quad, NULL, NULL, &Nq, NULL, NULL));
54069566063dSJacob Faibussowitsch       PetscCall(PetscFEGetDimension(fe, &Nb));
54073e9753d6SMatthew G. Knepley       blockSize = Nb;
54083e9753d6SMatthew G. Knepley       batchSize = numBlocks * blockSize;
54099566063dSJacob Faibussowitsch       PetscCall(PetscFESetTileSizes(fe, blockSize, numBlocks, batchSize, numBatches));
54103e9753d6SMatthew G. Knepley       numChunks = numCells / (numBatches * batchSize);
54113e9753d6SMatthew G. Knepley       Ne        = numChunks * numBatches * batchSize;
54123e9753d6SMatthew G. Knepley       Nr        = numCells % (numBatches * batchSize);
54133e9753d6SMatthew G. Knepley       offset    = numCells - Nr;
541407218a29SMatthew G. Knepley       PetscCall(PetscFEGeomGetChunk(geom, 0, offset * 2, &chunkGeom));
541507218a29SMatthew G. Knepley       PetscCall(PetscFEGeomGetChunk(geom, offset * 2, numCells * 2, &remGeom));
54169566063dSJacob Faibussowitsch       PetscCall(PetscDSGetCohesive(ds, f, &isCohesiveField));
54175fedec97SMatthew G. Knepley       chunkGeom->isCohesive = remGeom->isCohesive = PETSC_TRUE;
54186528b96dSMatthew G. Knepley       key[0].field                                = f;
54196528b96dSMatthew G. Knepley       key[1].field                                = f;
54205fedec97SMatthew G. Knepley       key[2].field                                = f;
542107218a29SMatthew G. Knepley       PetscCall(PetscFEIntegrateHybridResidual(ds, dsIn, key[0], 0, Ne, chunkGeom, u, u_t, dsAux[0], a[0], t, elemVecNeg));
54228e3a54c0SPierre Jolivet       PetscCall(PetscFEIntegrateHybridResidual(ds, dsIn, key[0], 0, Nr, remGeom, &u[offset * totDimIn], PetscSafePointerPlusOffset(u_t, offset * totDimIn), dsAux[0], PetscSafePointerPlusOffset(a[0], offset * totDimAux[0]), t, &elemVecNeg[offset * totDim]));
542307218a29SMatthew G. Knepley       PetscCall(PetscFEIntegrateHybridResidual(ds, dsIn, key[1], 1, Ne, chunkGeom, u, u_t, dsAux[1], a[1], t, elemVecPos));
54248e3a54c0SPierre Jolivet       PetscCall(PetscFEIntegrateHybridResidual(ds, dsIn, key[1], 1, Nr, remGeom, &u[offset * totDimIn], PetscSafePointerPlusOffset(u_t, offset * totDimIn), dsAux[1], PetscSafePointerPlusOffset(a[1], offset * totDimAux[1]), t, &elemVecPos[offset * totDim]));
542507218a29SMatthew G. Knepley       PetscCall(PetscFEIntegrateHybridResidual(ds, dsIn, key[2], 2, Ne, chunkGeom, u, u_t, dsAux[2], a[2], t, elemVecCoh));
54268e3a54c0SPierre Jolivet       PetscCall(PetscFEIntegrateHybridResidual(ds, dsIn, key[2], 2, Nr, remGeom, &u[offset * totDimIn], PetscSafePointerPlusOffset(u_t, offset * totDimIn), dsAux[2], PetscSafePointerPlusOffset(a[2], offset * totDimAux[2]), t, &elemVecCoh[offset * totDim]));
54279566063dSJacob Faibussowitsch       PetscCall(PetscFEGeomRestoreChunk(geom, offset, numCells, &remGeom));
54289566063dSJacob Faibussowitsch       PetscCall(PetscFEGeomRestoreChunk(geom, 0, offset, &chunkGeom));
54293e9753d6SMatthew G. Knepley     }
54303e9753d6SMatthew G. Knepley     /* Add elemVec to locX */
54313e9753d6SMatthew G. Knepley     for (c = cS; c < cE; ++c) {
54323e9753d6SMatthew G. Knepley       const PetscInt cell = cells ? cells[c] : c;
54333e9753d6SMatthew G. Knepley       const PetscInt cind = c - cStart;
543407218a29SMatthew G. Knepley       PetscInt       i;
54353e9753d6SMatthew G. Knepley 
543607218a29SMatthew G. Knepley       /* Scale element values */
543707218a29SMatthew G. Knepley       if (locS[0]) {
54383e2b0218SMatthew G. Knepley         PetscInt  Nb, off = cind * totDim, soff = cind * totDimScale[0];
543907218a29SMatthew G. Knepley         PetscBool cohesive;
544007218a29SMatthew G. Knepley 
544107218a29SMatthew G. Knepley         for (f = 0; f < Nf; ++f) {
544207218a29SMatthew G. Knepley           PetscCall(PetscDSGetFieldSize(ds, f, &Nb));
544307218a29SMatthew G. Knepley           PetscCall(PetscDSGetCohesive(ds, f, &cohesive));
544407218a29SMatthew G. Knepley           if (f == key[2].field) {
544507218a29SMatthew G. Knepley             PetscCheck(cohesive, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Scaling should not happen for face fields");
544607218a29SMatthew G. Knepley             // No cohesive scaling field is currently input
544707218a29SMatthew G. Knepley             for (i = 0; i < Nb; ++i) elemVecCoh[off + i] += s[0][soff + i] * elemVecNeg[off + i] + s[1][soff + i] * elemVecPos[off + i];
544807218a29SMatthew G. Knepley             off += Nb;
544907218a29SMatthew G. Knepley           } else {
545007218a29SMatthew G. Knepley             const PetscInt N = cohesive ? Nb : Nb * 2;
545107218a29SMatthew G. Knepley 
545207218a29SMatthew G. Knepley             for (i = 0; i < N; ++i) elemVecCoh[off + i] += elemVecNeg[off + i] + elemVecPos[off + i];
545307218a29SMatthew G. Knepley             off += N;
545407218a29SMatthew G. Knepley           }
545507218a29SMatthew G. Knepley         }
545607218a29SMatthew G. Knepley       } else {
545707218a29SMatthew G. Knepley         for (i = cind * totDim; i < (cind + 1) * totDim; ++i) elemVecCoh[i] += elemVecNeg[i] + elemVecPos[i];
545807218a29SMatthew G. Knepley       }
545907218a29SMatthew G. Knepley       if (mesh->printFEM > 1) PetscCall(DMPrintCellVector(cell, name, totDim, &elemVecCoh[cind * totDim]));
54603e9753d6SMatthew G. Knepley       if (ghostLabel) {
54613e9753d6SMatthew G. Knepley         PetscInt ghostVal;
54623e9753d6SMatthew G. Knepley 
54639566063dSJacob Faibussowitsch         PetscCall(DMLabelGetValue(ghostLabel, cell, &ghostVal));
54643e9753d6SMatthew G. Knepley         if (ghostVal > 0) continue;
54653e9753d6SMatthew G. Knepley       }
546607218a29SMatthew G. Knepley       PetscCall(DMPlexVecSetClosure(dm, section, locF, cell, &elemVecCoh[cind * totDim], ADD_ALL_VALUES));
54673e9753d6SMatthew G. Knepley     }
54683e9753d6SMatthew G. Knepley   }
54699566063dSJacob Faibussowitsch   PetscCall(DMPlexRestoreCellFields(dm, cellIS, locX, locX_t, locA[2], &u, &u_t, &a[2]));
547007218a29SMatthew G. Knepley   PetscCall(DMPlexRestoreHybridFields(dm, dmAux, dsAux, cellIS, locA, PETSC_TRUE, a));
54713e2b0218SMatthew G. Knepley   PetscCall(DMPlexRestoreHybridFields(dm, dmScale, dsScale, cellIS, locS, PETSC_TRUE, s));
547207218a29SMatthew G. Knepley   PetscCall(DMRestoreWorkArray(dm, numCells * totDim, MPIU_SCALAR, &elemVecNeg));
547307218a29SMatthew G. Knepley   PetscCall(DMRestoreWorkArray(dm, numCells * totDim, MPIU_SCALAR, &elemVecPos));
547407218a29SMatthew G. Knepley   PetscCall(DMRestoreWorkArray(dm, numCells * totDim, MPIU_SCALAR, &elemVecCoh));
54759566063dSJacob Faibussowitsch   PetscCall(PetscFree(faces));
54769566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&chunkIS));
54779566063dSJacob Faibussowitsch   PetscCall(ISRestorePointRange(cellIS, &cStart, &cEnd, &cells));
54783e9753d6SMatthew G. Knepley   if (maxDegree <= 1) {
54799566063dSJacob Faibussowitsch     PetscCall(DMSNESRestoreFEGeom(coordField, cellIS, affineQuad, PETSC_FALSE, &affineGeom));
54809566063dSJacob Faibussowitsch     PetscCall(PetscQuadratureDestroy(&affineQuad));
54813e9753d6SMatthew G. Knepley   } else {
54823e9753d6SMatthew G. Knepley     for (f = 0; f < Nf; ++f) {
54839566063dSJacob Faibussowitsch       if (geoms) PetscCall(DMSNESRestoreFEGeom(coordField, cellIS, quads[f], PETSC_FALSE, &geoms[f]));
54849566063dSJacob Faibussowitsch       if (quads) PetscCall(PetscQuadratureDestroy(&quads[f]));
54853e9753d6SMatthew G. Knepley     }
54869566063dSJacob Faibussowitsch     PetscCall(PetscFree2(quads, geoms));
54873e9753d6SMatthew G. Knepley   }
548885cc2951SMatthew G. Knepley   if (mesh->printFEM) {
548985cc2951SMatthew G. Knepley     Vec          locFbc;
549085cc2951SMatthew G. Knepley     PetscInt     pStart, pEnd, p, maxDof;
549185cc2951SMatthew G. Knepley     PetscScalar *zeroes;
549285cc2951SMatthew G. Knepley 
549385cc2951SMatthew G. Knepley     PetscCall(VecDuplicate(locF, &locFbc));
549485cc2951SMatthew G. Knepley     PetscCall(VecCopy(locF, locFbc));
549585cc2951SMatthew G. Knepley     PetscCall(PetscSectionGetChart(section, &pStart, &pEnd));
549685cc2951SMatthew G. Knepley     PetscCall(PetscSectionGetMaxDof(section, &maxDof));
549785cc2951SMatthew G. Knepley     PetscCall(PetscCalloc1(maxDof, &zeroes));
549885cc2951SMatthew G. Knepley     for (p = pStart; p < pEnd; p++) PetscCall(VecSetValuesSection(locFbc, section, p, zeroes, INSERT_BC_VALUES));
549985cc2951SMatthew G. Knepley     PetscCall(PetscFree(zeroes));
550085cc2951SMatthew G. Knepley     PetscCall(DMPrintLocalVec(dm, name, mesh->printTol, locFbc));
550185cc2951SMatthew G. Knepley     PetscCall(VecDestroy(&locFbc));
550285cc2951SMatthew G. Knepley   }
55033cc88e6aSStefano Zampini end:
55049566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(DMPLEX_ResidualFEM, dm, 0, 0, 0));
55053ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
55063e9753d6SMatthew G. Knepley }
55073e9753d6SMatthew G. Knepley 
5508a4e35b19SJacob Faibussowitsch static PetscErrorCode DMPlexComputeBdJacobian_Single_Internal(DM dm, PetscReal t, PetscWeakForm wf, DMLabel label, PetscInt numValues, const PetscInt values[], PetscInt fieldI, Vec locX, Vec locX_t, PetscReal X_tShift, Mat Jac, Mat JacP, DMField coordField, IS facetIS)
5509d71ae5a4SJacob Faibussowitsch {
55103e9753d6SMatthew G. Knepley   DM_Plex        *mesh = (DM_Plex *)dm->data;
55113e9753d6SMatthew G. Knepley   DM              plex = NULL, plexA = NULL, tdm;
55123e9753d6SMatthew G. Knepley   DMEnclosureType encAux;
5513be62b2b4SMatthew G. Knepley   PetscDS         ds, dsAux           = NULL;
55143e9753d6SMatthew G. Knepley   PetscSection    section, sectionAux = NULL;
5515e432b41dSStefano Zampini   PetscSection    globalSection;
55163e9753d6SMatthew G. Knepley   Vec             locA = NULL, tv;
5517be62b2b4SMatthew G. Knepley   PetscScalar    *u = NULL, *u_t = NULL, *a = NULL, *elemMat = NULL, *elemMatP = NULL;
55183e9753d6SMatthew G. Knepley   PetscInt        v;
55193e9753d6SMatthew G. Knepley   PetscInt        Nf, totDim, totDimAux = 0;
5520be62b2b4SMatthew G. Knepley   PetscBool       hasJac = PETSC_FALSE, hasPrec = PETSC_FALSE, transform;
55213e9753d6SMatthew G. Knepley 
55223e9753d6SMatthew G. Knepley   PetscFunctionBegin;
55239566063dSJacob Faibussowitsch   PetscCall(DMConvert(dm, DMPLEX, &plex));
55249566063dSJacob Faibussowitsch   PetscCall(DMHasBasisTransform(dm, &transform));
55259566063dSJacob Faibussowitsch   PetscCall(DMGetBasisTransformDM_Internal(dm, &tdm));
55269566063dSJacob Faibussowitsch   PetscCall(DMGetBasisTransformVec_Internal(dm, &tv));
55279566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dm, &section));
5528be62b2b4SMatthew G. Knepley   PetscCall(DMGetDS(dm, &ds));
5529be62b2b4SMatthew G. Knepley   PetscCall(PetscDSGetNumFields(ds, &Nf));
5530be62b2b4SMatthew G. Knepley   PetscCall(PetscDSGetTotalDimension(ds, &totDim));
5531be62b2b4SMatthew G. Knepley   PetscCall(PetscDSHasJacobian(ds, &hasJac));
5532be62b2b4SMatthew G. Knepley   PetscCall(PetscDSHasJacobianPreconditioner(ds, &hasPrec));
55339566063dSJacob Faibussowitsch   PetscCall(DMGetAuxiliaryVec(dm, label, values[0], 0, &locA));
55343e9753d6SMatthew G. Knepley   if (locA) {
55353e9753d6SMatthew G. Knepley     DM dmAux;
55363e9753d6SMatthew G. Knepley 
55379566063dSJacob Faibussowitsch     PetscCall(VecGetDM(locA, &dmAux));
55389566063dSJacob Faibussowitsch     PetscCall(DMGetEnclosureRelation(dmAux, dm, &encAux));
55399566063dSJacob Faibussowitsch     PetscCall(DMConvert(dmAux, DMPLEX, &plexA));
5540be62b2b4SMatthew G. Knepley     PetscCall(DMGetDS(plexA, &dsAux));
5541be62b2b4SMatthew G. Knepley     PetscCall(PetscDSGetTotalDimension(dsAux, &totDimAux));
55429566063dSJacob Faibussowitsch     PetscCall(DMGetLocalSection(plexA, &sectionAux));
55433e9753d6SMatthew G. Knepley   }
55443e9753d6SMatthew G. Knepley 
55459566063dSJacob Faibussowitsch   PetscCall(DMGetGlobalSection(dm, &globalSection));
55463e9753d6SMatthew G. Knepley   for (v = 0; v < numValues; ++v) {
55473e9753d6SMatthew G. Knepley     PetscFEGeom    *fgeom;
55483e9753d6SMatthew G. Knepley     PetscInt        maxDegree;
55493e9753d6SMatthew G. Knepley     PetscQuadrature qGeom = NULL;
55503e9753d6SMatthew G. Knepley     IS              pointIS;
55513e9753d6SMatthew G. Knepley     const PetscInt *points;
555206ad1575SMatthew G. Knepley     PetscFormKey    key;
55533e9753d6SMatthew G. Knepley     PetscInt        numFaces, face, Nq;
55543e9753d6SMatthew G. Knepley 
555545480ffeSMatthew G. Knepley     key.label = label;
555645480ffeSMatthew G. Knepley     key.value = values[v];
555706ad1575SMatthew G. Knepley     key.part  = 0;
55589566063dSJacob Faibussowitsch     PetscCall(DMLabelGetStratumIS(label, values[v], &pointIS));
55593e9753d6SMatthew G. Knepley     if (!pointIS) continue; /* No points with that id on this process */
55603e9753d6SMatthew G. Knepley     {
55613e9753d6SMatthew G. Knepley       IS isectIS;
55623e9753d6SMatthew G. Knepley 
55633e9753d6SMatthew G. Knepley       /* TODO: Special cases of ISIntersect where it is quick to check a prior if one is a superset of the other */
55649566063dSJacob Faibussowitsch       PetscCall(ISIntersect_Caching_Internal(facetIS, pointIS, &isectIS));
55659566063dSJacob Faibussowitsch       PetscCall(ISDestroy(&pointIS));
55663e9753d6SMatthew G. Knepley       pointIS = isectIS;
55673e9753d6SMatthew G. Knepley     }
55689566063dSJacob Faibussowitsch     PetscCall(ISGetLocalSize(pointIS, &numFaces));
55699566063dSJacob Faibussowitsch     PetscCall(ISGetIndices(pointIS, &points));
5570be62b2b4SMatthew G. Knepley     PetscCall(PetscMalloc5(numFaces * totDim, &u, locX_t ? numFaces * totDim : 0, &u_t, hasJac ? numFaces * totDim * totDim : 0, &elemMat, hasPrec ? numFaces * totDim * totDim : 0, &elemMatP, locA ? numFaces * totDimAux : 0, &a));
55719566063dSJacob Faibussowitsch     PetscCall(DMFieldGetDegree(coordField, pointIS, NULL, &maxDegree));
557248a46eb9SPierre Jolivet     if (maxDegree <= 1) PetscCall(DMFieldCreateDefaultQuadrature(coordField, pointIS, &qGeom));
55733e9753d6SMatthew G. Knepley     if (!qGeom) {
55743e9753d6SMatthew G. Knepley       PetscFE fe;
55753e9753d6SMatthew G. Knepley 
5576be62b2b4SMatthew G. Knepley       PetscCall(PetscDSGetDiscretization(ds, fieldI, (PetscObject *)&fe));
55779566063dSJacob Faibussowitsch       PetscCall(PetscFEGetFaceQuadrature(fe, &qGeom));
55789566063dSJacob Faibussowitsch       PetscCall(PetscObjectReference((PetscObject)qGeom));
55793e9753d6SMatthew G. Knepley     }
55809566063dSJacob Faibussowitsch     PetscCall(PetscQuadratureGetData(qGeom, NULL, NULL, &Nq, NULL, NULL));
55819566063dSJacob Faibussowitsch     PetscCall(DMSNESGetFEGeom(coordField, pointIS, qGeom, PETSC_TRUE, &fgeom));
55823e9753d6SMatthew G. Knepley     for (face = 0; face < numFaces; ++face) {
5583f15274beSMatthew Knepley       const PetscInt point = points[face], *support;
55843e9753d6SMatthew G. Knepley       PetscScalar   *x     = NULL;
5585f15274beSMatthew Knepley       PetscInt       i;
55863e9753d6SMatthew G. Knepley 
55879566063dSJacob Faibussowitsch       PetscCall(DMPlexGetSupport(dm, point, &support));
55889566063dSJacob Faibussowitsch       PetscCall(DMPlexVecGetClosure(plex, section, locX, support[0], NULL, &x));
55893e9753d6SMatthew G. Knepley       for (i = 0; i < totDim; ++i) u[face * totDim + i] = x[i];
55909566063dSJacob Faibussowitsch       PetscCall(DMPlexVecRestoreClosure(plex, section, locX, support[0], NULL, &x));
55913e9753d6SMatthew G. Knepley       if (locX_t) {
55929566063dSJacob Faibussowitsch         PetscCall(DMPlexVecGetClosure(plex, section, locX_t, support[0], NULL, &x));
55933e9753d6SMatthew G. Knepley         for (i = 0; i < totDim; ++i) u_t[face * totDim + i] = x[i];
55949566063dSJacob Faibussowitsch         PetscCall(DMPlexVecRestoreClosure(plex, section, locX_t, support[0], NULL, &x));
55953e9753d6SMatthew G. Knepley       }
55963e9753d6SMatthew G. Knepley       if (locA) {
55973e9753d6SMatthew G. Knepley         PetscInt subp;
55989566063dSJacob Faibussowitsch         PetscCall(DMGetEnclosurePoint(plexA, dm, encAux, support[0], &subp));
55999566063dSJacob Faibussowitsch         PetscCall(DMPlexVecGetClosure(plexA, sectionAux, locA, subp, NULL, &x));
56003e9753d6SMatthew G. Knepley         for (i = 0; i < totDimAux; ++i) a[face * totDimAux + i] = x[i];
56019566063dSJacob Faibussowitsch         PetscCall(DMPlexVecRestoreClosure(plexA, sectionAux, locA, subp, NULL, &x));
56023e9753d6SMatthew G. Knepley       }
56033e9753d6SMatthew G. Knepley     }
56049566063dSJacob Faibussowitsch     PetscCall(PetscArrayzero(elemMat, numFaces * totDim * totDim));
56053e9753d6SMatthew G. Knepley     {
56063e9753d6SMatthew G. Knepley       PetscFE  fe;
56073e9753d6SMatthew G. Knepley       PetscInt Nb;
56083e9753d6SMatthew G. Knepley       /* Conforming batches */
56093e9753d6SMatthew G. Knepley       PetscInt numChunks, numBatches, numBlocks, Ne, blockSize, batchSize;
56103e9753d6SMatthew G. Knepley       /* Remainder */
56113e9753d6SMatthew G. Knepley       PetscFEGeom *chunkGeom = NULL;
56123e9753d6SMatthew G. Knepley       PetscInt     fieldJ, Nr, offset;
56133e9753d6SMatthew G. Knepley 
5614be62b2b4SMatthew G. Knepley       PetscCall(PetscDSGetDiscretization(ds, fieldI, (PetscObject *)&fe));
56159566063dSJacob Faibussowitsch       PetscCall(PetscFEGetDimension(fe, &Nb));
56169566063dSJacob Faibussowitsch       PetscCall(PetscFEGetTileSizes(fe, NULL, &numBlocks, NULL, &numBatches));
56173e9753d6SMatthew G. Knepley       blockSize = Nb;
56183e9753d6SMatthew G. Knepley       batchSize = numBlocks * blockSize;
56199566063dSJacob Faibussowitsch       PetscCall(PetscFESetTileSizes(fe, blockSize, numBlocks, batchSize, numBatches));
56203e9753d6SMatthew G. Knepley       numChunks = numFaces / (numBatches * batchSize);
56213e9753d6SMatthew G. Knepley       Ne        = numChunks * numBatches * batchSize;
56223e9753d6SMatthew G. Knepley       Nr        = numFaces % (numBatches * batchSize);
56233e9753d6SMatthew G. Knepley       offset    = numFaces - Nr;
56249566063dSJacob Faibussowitsch       PetscCall(PetscFEGeomGetChunk(fgeom, 0, offset, &chunkGeom));
56253e9753d6SMatthew G. Knepley       for (fieldJ = 0; fieldJ < Nf; ++fieldJ) {
562645480ffeSMatthew G. Knepley         key.field = fieldI * Nf + fieldJ;
5627be62b2b4SMatthew G. Knepley         if (hasJac) PetscCall(PetscFEIntegrateBdJacobian(ds, wf, PETSCFE_JACOBIAN, key, Ne, chunkGeom, u, u_t, dsAux, a, t, X_tShift, elemMat));
5628be62b2b4SMatthew G. Knepley         if (hasPrec) PetscCall(PetscFEIntegrateBdJacobian(ds, wf, PETSCFE_JACOBIAN_PRE, key, Ne, chunkGeom, u, u_t, dsAux, a, t, X_tShift, elemMatP));
56293e9753d6SMatthew G. Knepley       }
56309566063dSJacob Faibussowitsch       PetscCall(PetscFEGeomGetChunk(fgeom, offset, numFaces, &chunkGeom));
56313e9753d6SMatthew G. Knepley       for (fieldJ = 0; fieldJ < Nf; ++fieldJ) {
563245480ffeSMatthew G. Knepley         key.field = fieldI * Nf + fieldJ;
5633be62b2b4SMatthew G. Knepley         if (hasJac)
56348e3a54c0SPierre Jolivet           PetscCall(PetscFEIntegrateBdJacobian(ds, wf, PETSCFE_JACOBIAN, key, Nr, chunkGeom, &u[offset * totDim], PetscSafePointerPlusOffset(u_t, offset * totDim), dsAux, PetscSafePointerPlusOffset(a, offset * totDimAux), t, X_tShift, &elemMat[offset * totDim * totDim]));
5635be62b2b4SMatthew G. Knepley         if (hasPrec)
56368e3a54c0SPierre Jolivet           PetscCall(PetscFEIntegrateBdJacobian(ds, wf, PETSCFE_JACOBIAN_PRE, key, Nr, chunkGeom, &u[offset * totDim], PetscSafePointerPlusOffset(u_t, offset * totDim), dsAux, PetscSafePointerPlusOffset(a, offset * totDimAux), t, X_tShift, &elemMatP[offset * totDim * totDim]));
56373e9753d6SMatthew G. Knepley       }
56389566063dSJacob Faibussowitsch       PetscCall(PetscFEGeomRestoreChunk(fgeom, offset, numFaces, &chunkGeom));
56393e9753d6SMatthew G. Knepley     }
56403e9753d6SMatthew G. Knepley     for (face = 0; face < numFaces; ++face) {
56413e9753d6SMatthew G. Knepley       const PetscInt point = points[face], *support;
56423e9753d6SMatthew G. Knepley 
56433e9753d6SMatthew G. Knepley       /* Transform to global basis before insertion in Jacobian */
56449566063dSJacob Faibussowitsch       PetscCall(DMPlexGetSupport(plex, point, &support));
56459566063dSJacob Faibussowitsch       if (transform) PetscCall(DMPlexBasisTransformPointTensor_Internal(dm, tdm, tv, support[0], PETSC_TRUE, totDim, &elemMat[face * totDim * totDim]));
5646be62b2b4SMatthew G. Knepley       if (hasPrec) {
5647be62b2b4SMatthew G. Knepley         if (hasJac) {
56489566063dSJacob Faibussowitsch           if (mesh->printFEM > 1) PetscCall(DMPrintCellMatrix(point, "BdJacobian", totDim, totDim, &elemMat[face * totDim * totDim]));
5649e8e188d2SZach Atkins           PetscCall(DMPlexMatSetClosure_Internal(plex, section, globalSection, mesh->useMatClPerm, JacP, support[0], &elemMat[face * totDim * totDim], ADD_VALUES));
56503e9753d6SMatthew G. Knepley         }
5651be62b2b4SMatthew G. Knepley         if (mesh->printFEM > 1) PetscCall(DMPrintCellMatrix(point, "BdJacobian", totDim, totDim, &elemMatP[face * totDim * totDim]));
5652be62b2b4SMatthew G. Knepley         PetscCall(DMPlexMatSetClosure_Internal(plex, section, globalSection, mesh->useMatClPerm, JacP, support[0], &elemMatP[face * totDim * totDim], ADD_VALUES));
5653be62b2b4SMatthew G. Knepley       } else {
5654be62b2b4SMatthew G. Knepley         if (hasJac) {
5655be62b2b4SMatthew G. Knepley           if (mesh->printFEM > 1) PetscCall(DMPrintCellMatrix(point, "BdJacobian", totDim, totDim, &elemMat[face * totDim * totDim]));
5656be62b2b4SMatthew G. Knepley           PetscCall(DMPlexMatSetClosure_Internal(plex, section, globalSection, mesh->useMatClPerm, JacP, support[0], &elemMat[face * totDim * totDim], ADD_VALUES));
5657be62b2b4SMatthew G. Knepley         }
5658be62b2b4SMatthew G. Knepley       }
5659be62b2b4SMatthew G. Knepley     }
56609566063dSJacob Faibussowitsch     PetscCall(DMSNESRestoreFEGeom(coordField, pointIS, qGeom, PETSC_TRUE, &fgeom));
56619566063dSJacob Faibussowitsch     PetscCall(PetscQuadratureDestroy(&qGeom));
56629566063dSJacob Faibussowitsch     PetscCall(ISRestoreIndices(pointIS, &points));
56639566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&pointIS));
5664be62b2b4SMatthew G. Knepley     PetscCall(PetscFree5(u, u_t, elemMat, elemMatP, a));
56653e9753d6SMatthew G. Knepley   }
56669566063dSJacob Faibussowitsch   if (plex) PetscCall(DMDestroy(&plex));
56679566063dSJacob Faibussowitsch   if (plexA) PetscCall(DMDestroy(&plexA));
56683ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
56693e9753d6SMatthew G. Knepley }
56703e9753d6SMatthew G. Knepley 
5671d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeBdJacobianSingle(DM dm, PetscReal t, PetscWeakForm wf, DMLabel label, PetscInt numValues, const PetscInt values[], PetscInt field, Vec locX, Vec locX_t, PetscReal X_tShift, Mat Jac, Mat JacP)
5672d71ae5a4SJacob Faibussowitsch {
56733e9753d6SMatthew G. Knepley   DMField  coordField;
56743e9753d6SMatthew G. Knepley   DMLabel  depthLabel;
56753e9753d6SMatthew G. Knepley   IS       facetIS;
56763e9753d6SMatthew G. Knepley   PetscInt dim;
56773e9753d6SMatthew G. Knepley 
56783e9753d6SMatthew G. Knepley   PetscFunctionBegin;
56799566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dm, &dim));
56809566063dSJacob Faibussowitsch   PetscCall(DMPlexGetDepthLabel(dm, &depthLabel));
56819566063dSJacob Faibussowitsch   PetscCall(DMLabelGetStratumIS(depthLabel, dim - 1, &facetIS));
56829566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateField(dm, &coordField));
56839566063dSJacob Faibussowitsch   PetscCall(DMPlexComputeBdJacobian_Single_Internal(dm, t, wf, label, numValues, values, field, locX, locX_t, X_tShift, Jac, JacP, coordField, facetIS));
56849566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&facetIS));
56853ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
56863e9753d6SMatthew G. Knepley }
56873e9753d6SMatthew G. Knepley 
5688a4e35b19SJacob Faibussowitsch static PetscErrorCode DMPlexComputeBdJacobian_Internal(DM dm, Vec locX, Vec locX_t, PetscReal t, PetscReal X_tShift, Mat Jac, Mat JacP, void *user)
5689d71ae5a4SJacob Faibussowitsch {
56903e9753d6SMatthew G. Knepley   PetscDS  prob;
56913e9753d6SMatthew G. Knepley   PetscInt dim, numBd, bd;
56923e9753d6SMatthew G. Knepley   DMLabel  depthLabel;
56933e9753d6SMatthew G. Knepley   DMField  coordField = NULL;
56943e9753d6SMatthew G. Knepley   IS       facetIS;
56953e9753d6SMatthew G. Knepley 
56963e9753d6SMatthew G. Knepley   PetscFunctionBegin;
56979566063dSJacob Faibussowitsch   PetscCall(DMGetDS(dm, &prob));
56989566063dSJacob Faibussowitsch   PetscCall(DMPlexGetDepthLabel(dm, &depthLabel));
56999566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dm, &dim));
57009566063dSJacob Faibussowitsch   PetscCall(DMLabelGetStratumIS(depthLabel, dim - 1, &facetIS));
57019566063dSJacob Faibussowitsch   PetscCall(PetscDSGetNumBoundary(prob, &numBd));
57029566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateField(dm, &coordField));
57033e9753d6SMatthew G. Knepley   for (bd = 0; bd < numBd; ++bd) {
570445480ffeSMatthew G. Knepley     PetscWeakForm           wf;
57053e9753d6SMatthew G. Knepley     DMBoundaryConditionType type;
57063e9753d6SMatthew G. Knepley     DMLabel                 label;
57073e9753d6SMatthew G. Knepley     const PetscInt         *values;
57083e9753d6SMatthew G. Knepley     PetscInt                fieldI, numValues;
57093e9753d6SMatthew G. Knepley     PetscObject             obj;
57103e9753d6SMatthew G. Knepley     PetscClassId            id;
57113e9753d6SMatthew G. Knepley 
57129566063dSJacob Faibussowitsch     PetscCall(PetscDSGetBoundary(prob, bd, &wf, &type, NULL, &label, &numValues, &values, &fieldI, NULL, NULL, NULL, NULL, NULL));
57133d3e5d66SMatthew G. Knepley     if (type & DM_BC_ESSENTIAL) continue;
57149566063dSJacob Faibussowitsch     PetscCall(PetscDSGetDiscretization(prob, fieldI, &obj));
57159566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetClassId(obj, &id));
57163d3e5d66SMatthew G. Knepley     if (id != PETSCFE_CLASSID) continue;
57179566063dSJacob Faibussowitsch     PetscCall(DMPlexComputeBdJacobian_Single_Internal(dm, t, wf, label, numValues, values, fieldI, locX, locX_t, X_tShift, Jac, JacP, coordField, facetIS));
57183e9753d6SMatthew G. Knepley   }
57199566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&facetIS));
57203ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
57213e9753d6SMatthew G. Knepley }
57223e9753d6SMatthew G. Knepley 
5723d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeJacobian_Internal(DM dm, PetscFormKey key, IS cellIS, PetscReal t, PetscReal X_tShift, Vec X, Vec X_t, Mat Jac, Mat JacP, void *user)
5724d71ae5a4SJacob Faibussowitsch {
57253e9753d6SMatthew G. Knepley   DM_Plex        *mesh  = (DM_Plex *)dm->data;
57263e9753d6SMatthew G. Knepley   const char     *name  = "Jacobian";
57279a2a23afSMatthew G. Knepley   DM              dmAux = NULL, plex, tdm;
57283e9753d6SMatthew G. Knepley   DMEnclosureType encAux;
57293e9753d6SMatthew G. Knepley   Vec             A, tv;
57303e9753d6SMatthew G. Knepley   DMField         coordField;
57313e9753d6SMatthew G. Knepley   PetscDS         prob, probAux = NULL;
5732e432b41dSStefano Zampini   PetscSection    section, globalSection, sectionAux;
57333e9753d6SMatthew G. Knepley   PetscScalar    *elemMat, *elemMatP, *elemMatD, *u, *u_t, *a = NULL;
57343e9753d6SMatthew G. Knepley   const PetscInt *cells;
57353e9753d6SMatthew G. Knepley   PetscInt        Nf, fieldI, fieldJ;
573628351e22SJed Brown   PetscInt        totDim, totDimAux = 0, cStart, cEnd, numCells, c;
5737e04ae0b4SMatthew G. Knepley   PetscBool       hasJac = PETSC_FALSE, hasPrec = PETSC_FALSE, hasDyn, hasFV = PETSC_FALSE, transform;
57383e9753d6SMatthew G. Knepley 
57393e9753d6SMatthew G. Knepley   PetscFunctionBegin;
5740af18b51aSmarkadams4   PetscCall(PetscLogEventBegin(DMPLEX_JacobianFEM, dm, 0, 0, 0));
5741e04ae0b4SMatthew G. Knepley   if (!cellIS) goto end;
57429566063dSJacob Faibussowitsch   PetscCall(ISGetPointRange(cellIS, &cStart, &cEnd, &cells));
5743437e83fbSMatthew G. Knepley   PetscCall(ISGetLocalSize(cellIS, &numCells));
5744437e83fbSMatthew G. Knepley   if (cStart >= cEnd) goto end;
57459566063dSJacob Faibussowitsch   PetscCall(DMHasBasisTransform(dm, &transform));
57469566063dSJacob Faibussowitsch   PetscCall(DMGetBasisTransformDM_Internal(dm, &tdm));
57479566063dSJacob Faibussowitsch   PetscCall(DMGetBasisTransformVec_Internal(dm, &tv));
57489566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dm, &section));
57499566063dSJacob Faibussowitsch   PetscCall(DMGetGlobalSection(dm, &globalSection));
575007218a29SMatthew G. Knepley   PetscCall(DMGetCellDS(dm, cells ? cells[cStart] : cStart, &prob, NULL));
57519566063dSJacob Faibussowitsch   PetscCall(PetscDSGetNumFields(prob, &Nf));
57529566063dSJacob Faibussowitsch   PetscCall(PetscDSGetTotalDimension(prob, &totDim));
57539566063dSJacob Faibussowitsch   PetscCall(PetscDSHasJacobian(prob, &hasJac));
57549566063dSJacob Faibussowitsch   PetscCall(PetscDSHasJacobianPreconditioner(prob, &hasPrec));
57553e9753d6SMatthew G. Knepley   /* user passed in the same matrix, avoid double contributions and
57563e9753d6SMatthew G. Knepley      only assemble the Jacobian */
57573e9753d6SMatthew G. Knepley   if (hasJac && Jac == JacP) hasPrec = PETSC_FALSE;
57589566063dSJacob Faibussowitsch   PetscCall(PetscDSHasDynamicJacobian(prob, &hasDyn));
57593e9753d6SMatthew G. Knepley   hasDyn = hasDyn && (X_tShift != 0.0) ? PETSC_TRUE : PETSC_FALSE;
57609566063dSJacob Faibussowitsch   PetscCall(DMGetAuxiliaryVec(dm, key.label, key.value, key.part, &A));
57619a2a23afSMatthew G. Knepley   if (A) {
57629566063dSJacob Faibussowitsch     PetscCall(VecGetDM(A, &dmAux));
57639566063dSJacob Faibussowitsch     PetscCall(DMGetEnclosureRelation(dmAux, dm, &encAux));
57649566063dSJacob Faibussowitsch     PetscCall(DMConvert(dmAux, DMPLEX, &plex));
57659566063dSJacob Faibussowitsch     PetscCall(DMGetLocalSection(plex, &sectionAux));
57669566063dSJacob Faibussowitsch     PetscCall(DMGetDS(dmAux, &probAux));
57679566063dSJacob Faibussowitsch     PetscCall(PetscDSGetTotalDimension(probAux, &totDimAux));
57683e9753d6SMatthew G. Knepley   }
57699566063dSJacob Faibussowitsch   PetscCall(PetscMalloc5(numCells * totDim, &u, X_t ? numCells * totDim : 0, &u_t, hasJac ? numCells * totDim * totDim : 0, &elemMat, hasPrec ? numCells * totDim * totDim : 0, &elemMatP, hasDyn ? numCells * totDim * totDim : 0, &elemMatD));
57709566063dSJacob Faibussowitsch   if (dmAux) PetscCall(PetscMalloc1(numCells * totDimAux, &a));
57719566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateField(dm, &coordField));
57723e9753d6SMatthew G. Knepley   for (c = cStart; c < cEnd; ++c) {
57733e9753d6SMatthew G. Knepley     const PetscInt cell = cells ? cells[c] : c;
57743e9753d6SMatthew G. Knepley     const PetscInt cind = c - cStart;
57753e9753d6SMatthew G. Knepley     PetscScalar   *x = NULL, *x_t = NULL;
57763e9753d6SMatthew G. Knepley     PetscInt       i;
57773e9753d6SMatthew G. Knepley 
57789566063dSJacob Faibussowitsch     PetscCall(DMPlexVecGetClosure(dm, section, X, cell, NULL, &x));
57793e9753d6SMatthew G. Knepley     for (i = 0; i < totDim; ++i) u[cind * totDim + i] = x[i];
57809566063dSJacob Faibussowitsch     PetscCall(DMPlexVecRestoreClosure(dm, section, X, cell, NULL, &x));
57813e9753d6SMatthew G. Knepley     if (X_t) {
57829566063dSJacob Faibussowitsch       PetscCall(DMPlexVecGetClosure(dm, section, X_t, cell, NULL, &x_t));
57833e9753d6SMatthew G. Knepley       for (i = 0; i < totDim; ++i) u_t[cind * totDim + i] = x_t[i];
57849566063dSJacob Faibussowitsch       PetscCall(DMPlexVecRestoreClosure(dm, section, X_t, cell, NULL, &x_t));
57853e9753d6SMatthew G. Knepley     }
57863e9753d6SMatthew G. Knepley     if (dmAux) {
57873e9753d6SMatthew G. Knepley       PetscInt subcell;
57889566063dSJacob Faibussowitsch       PetscCall(DMGetEnclosurePoint(dmAux, dm, encAux, cell, &subcell));
57899566063dSJacob Faibussowitsch       PetscCall(DMPlexVecGetClosure(plex, sectionAux, A, subcell, NULL, &x));
57903e9753d6SMatthew G. Knepley       for (i = 0; i < totDimAux; ++i) a[cind * totDimAux + i] = x[i];
57919566063dSJacob Faibussowitsch       PetscCall(DMPlexVecRestoreClosure(plex, sectionAux, A, subcell, NULL, &x));
57923e9753d6SMatthew G. Knepley     }
57933e9753d6SMatthew G. Knepley   }
57949566063dSJacob Faibussowitsch   if (hasJac) PetscCall(PetscArrayzero(elemMat, numCells * totDim * totDim));
57959566063dSJacob Faibussowitsch   if (hasPrec) PetscCall(PetscArrayzero(elemMatP, numCells * totDim * totDim));
57969566063dSJacob Faibussowitsch   if (hasDyn) PetscCall(PetscArrayzero(elemMatD, numCells * totDim * totDim));
57973e9753d6SMatthew G. Knepley   for (fieldI = 0; fieldI < Nf; ++fieldI) {
57983e9753d6SMatthew G. Knepley     PetscClassId    id;
57993e9753d6SMatthew G. Knepley     PetscFE         fe;
58003e9753d6SMatthew G. Knepley     PetscQuadrature qGeom = NULL;
58013e9753d6SMatthew G. Knepley     PetscInt        Nb;
58023e9753d6SMatthew G. Knepley     /* Conforming batches */
58033e9753d6SMatthew G. Knepley     PetscInt numChunks, numBatches, numBlocks, Ne, blockSize, batchSize;
58043e9753d6SMatthew G. Knepley     /* Remainder */
58053e9753d6SMatthew G. Knepley     PetscInt     Nr, offset, Nq;
58063e9753d6SMatthew G. Knepley     PetscInt     maxDegree;
58073e9753d6SMatthew G. Knepley     PetscFEGeom *cgeomFEM, *chunkGeom = NULL, *remGeom = NULL;
58083e9753d6SMatthew G. Knepley 
58099566063dSJacob Faibussowitsch     PetscCall(PetscDSGetDiscretization(prob, fieldI, (PetscObject *)&fe));
58109566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetClassId((PetscObject)fe, &id));
58119371c9d4SSatish Balay     if (id == PETSCFV_CLASSID) {
58129371c9d4SSatish Balay       hasFV = PETSC_TRUE;
58139371c9d4SSatish Balay       continue;
58149371c9d4SSatish Balay     }
58159566063dSJacob Faibussowitsch     PetscCall(PetscFEGetDimension(fe, &Nb));
58169566063dSJacob Faibussowitsch     PetscCall(PetscFEGetTileSizes(fe, NULL, &numBlocks, NULL, &numBatches));
58179566063dSJacob Faibussowitsch     PetscCall(DMFieldGetDegree(coordField, cellIS, NULL, &maxDegree));
581848a46eb9SPierre Jolivet     if (maxDegree <= 1) PetscCall(DMFieldCreateDefaultQuadrature(coordField, cellIS, &qGeom));
58193e9753d6SMatthew G. Knepley     if (!qGeom) {
58209566063dSJacob Faibussowitsch       PetscCall(PetscFEGetQuadrature(fe, &qGeom));
58219566063dSJacob Faibussowitsch       PetscCall(PetscObjectReference((PetscObject)qGeom));
58223e9753d6SMatthew G. Knepley     }
58239566063dSJacob Faibussowitsch     PetscCall(PetscQuadratureGetData(qGeom, NULL, NULL, &Nq, NULL, NULL));
58249566063dSJacob Faibussowitsch     PetscCall(DMSNESGetFEGeom(coordField, cellIS, qGeom, PETSC_FALSE, &cgeomFEM));
58253e9753d6SMatthew G. Knepley     blockSize = Nb;
58263e9753d6SMatthew G. Knepley     batchSize = numBlocks * blockSize;
58279566063dSJacob Faibussowitsch     PetscCall(PetscFESetTileSizes(fe, blockSize, numBlocks, batchSize, numBatches));
58283e9753d6SMatthew G. Knepley     numChunks = numCells / (numBatches * batchSize);
58293e9753d6SMatthew G. Knepley     Ne        = numChunks * numBatches * batchSize;
58303e9753d6SMatthew G. Knepley     Nr        = numCells % (numBatches * batchSize);
58313e9753d6SMatthew G. Knepley     offset    = numCells - Nr;
58329566063dSJacob Faibussowitsch     PetscCall(PetscFEGeomGetChunk(cgeomFEM, 0, offset, &chunkGeom));
58339566063dSJacob Faibussowitsch     PetscCall(PetscFEGeomGetChunk(cgeomFEM, offset, numCells, &remGeom));
58343e9753d6SMatthew G. Knepley     for (fieldJ = 0; fieldJ < Nf; ++fieldJ) {
58356528b96dSMatthew G. Knepley       key.field = fieldI * Nf + fieldJ;
58363e9753d6SMatthew G. Knepley       if (hasJac) {
58379566063dSJacob Faibussowitsch         PetscCall(PetscFEIntegrateJacobian(prob, PETSCFE_JACOBIAN, key, Ne, chunkGeom, u, u_t, probAux, a, t, X_tShift, elemMat));
58388e3a54c0SPierre Jolivet         PetscCall(PetscFEIntegrateJacobian(prob, PETSCFE_JACOBIAN, key, Nr, remGeom, &u[offset * totDim], PetscSafePointerPlusOffset(u_t, offset * totDim), probAux, PetscSafePointerPlusOffset(a, offset * totDimAux), t, X_tShift, &elemMat[offset * totDim * totDim]));
58393e9753d6SMatthew G. Knepley       }
58403e9753d6SMatthew G. Knepley       if (hasPrec) {
58419566063dSJacob Faibussowitsch         PetscCall(PetscFEIntegrateJacobian(prob, PETSCFE_JACOBIAN_PRE, key, Ne, chunkGeom, u, u_t, probAux, a, t, X_tShift, elemMatP));
58428e3a54c0SPierre Jolivet         PetscCall(PetscFEIntegrateJacobian(prob, PETSCFE_JACOBIAN_PRE, key, Nr, remGeom, &u[offset * totDim], PetscSafePointerPlusOffset(u_t, offset * totDim), probAux, PetscSafePointerPlusOffset(a, offset * totDimAux), t, X_tShift, &elemMatP[offset * totDim * totDim]));
58433e9753d6SMatthew G. Knepley       }
58443e9753d6SMatthew G. Knepley       if (hasDyn) {
58459566063dSJacob Faibussowitsch         PetscCall(PetscFEIntegrateJacobian(prob, PETSCFE_JACOBIAN_DYN, key, Ne, chunkGeom, u, u_t, probAux, a, t, X_tShift, elemMatD));
58468e3a54c0SPierre Jolivet         PetscCall(PetscFEIntegrateJacobian(prob, PETSCFE_JACOBIAN_DYN, key, Nr, remGeom, &u[offset * totDim], PetscSafePointerPlusOffset(u_t, offset * totDim), probAux, PetscSafePointerPlusOffset(a, offset * totDimAux), t, X_tShift, &elemMatD[offset * totDim * totDim]));
58473e9753d6SMatthew G. Knepley       }
58483e9753d6SMatthew G. Knepley     }
58499566063dSJacob Faibussowitsch     PetscCall(PetscFEGeomRestoreChunk(cgeomFEM, offset, numCells, &remGeom));
58509566063dSJacob Faibussowitsch     PetscCall(PetscFEGeomRestoreChunk(cgeomFEM, 0, offset, &chunkGeom));
58519566063dSJacob Faibussowitsch     PetscCall(DMSNESRestoreFEGeom(coordField, cellIS, qGeom, PETSC_FALSE, &cgeomFEM));
58529566063dSJacob Faibussowitsch     PetscCall(PetscQuadratureDestroy(&qGeom));
58533e9753d6SMatthew G. Knepley   }
58543e9753d6SMatthew G. Knepley   /*   Add contribution from X_t */
58559371c9d4SSatish Balay   if (hasDyn) {
58569371c9d4SSatish Balay     for (c = 0; c < numCells * totDim * totDim; ++c) elemMat[c] += X_tShift * elemMatD[c];
58579371c9d4SSatish Balay   }
58583e9753d6SMatthew G. Knepley   if (hasFV) {
58593e9753d6SMatthew G. Knepley     PetscClassId id;
58603e9753d6SMatthew G. Knepley     PetscFV      fv;
58613e9753d6SMatthew G. Knepley     PetscInt     offsetI, NcI, NbI = 1, fc, f;
58623e9753d6SMatthew G. Knepley 
58633e9753d6SMatthew G. Knepley     for (fieldI = 0; fieldI < Nf; ++fieldI) {
58649566063dSJacob Faibussowitsch       PetscCall(PetscDSGetDiscretization(prob, fieldI, (PetscObject *)&fv));
58659566063dSJacob Faibussowitsch       PetscCall(PetscDSGetFieldOffset(prob, fieldI, &offsetI));
58669566063dSJacob Faibussowitsch       PetscCall(PetscObjectGetClassId((PetscObject)fv, &id));
58673e9753d6SMatthew G. Knepley       if (id != PETSCFV_CLASSID) continue;
58683e9753d6SMatthew G. Knepley       /* Put in the identity */
58699566063dSJacob Faibussowitsch       PetscCall(PetscFVGetNumComponents(fv, &NcI));
58703e9753d6SMatthew G. Knepley       for (c = cStart; c < cEnd; ++c) {
58713e9753d6SMatthew G. Knepley         const PetscInt cind    = c - cStart;
58723e9753d6SMatthew G. Knepley         const PetscInt eOffset = cind * totDim * totDim;
58733e9753d6SMatthew G. Knepley         for (fc = 0; fc < NcI; ++fc) {
58743e9753d6SMatthew G. Knepley           for (f = 0; f < NbI; ++f) {
58753e9753d6SMatthew G. Knepley             const PetscInt i = offsetI + f * NcI + fc;
58763e9753d6SMatthew G. Knepley             if (hasPrec) {
5877ad540459SPierre Jolivet               if (hasJac) elemMat[eOffset + i * totDim + i] = 1.0;
58783e9753d6SMatthew G. Knepley               elemMatP[eOffset + i * totDim + i] = 1.0;
58799371c9d4SSatish Balay             } else {
58809371c9d4SSatish Balay               elemMat[eOffset + i * totDim + i] = 1.0;
58819371c9d4SSatish Balay             }
58823e9753d6SMatthew G. Knepley           }
58833e9753d6SMatthew G. Knepley         }
58843e9753d6SMatthew G. Knepley       }
58853e9753d6SMatthew G. Knepley     }
58863e9753d6SMatthew G. Knepley     /* No allocated space for FV stuff, so ignore the zero entries */
58879566063dSJacob Faibussowitsch     PetscCall(MatSetOption(JacP, MAT_IGNORE_ZERO_ENTRIES, PETSC_TRUE));
58883e9753d6SMatthew G. Knepley   }
58893e9753d6SMatthew G. Knepley   /* Insert values into matrix */
58903e9753d6SMatthew G. Knepley   for (c = cStart; c < cEnd; ++c) {
58913e9753d6SMatthew G. Knepley     const PetscInt cell = cells ? cells[c] : c;
58923e9753d6SMatthew G. Knepley     const PetscInt cind = c - cStart;
58933e9753d6SMatthew G. Knepley 
58943e9753d6SMatthew G. Knepley     /* Transform to global basis before insertion in Jacobian */
58959566063dSJacob Faibussowitsch     if (transform) PetscCall(DMPlexBasisTransformPointTensor_Internal(dm, tdm, tv, cell, PETSC_TRUE, totDim, &elemMat[cind * totDim * totDim]));
58963e9753d6SMatthew G. Knepley     if (hasPrec) {
58973e9753d6SMatthew G. Knepley       if (hasJac) {
58989566063dSJacob Faibussowitsch         if (mesh->printFEM > 1) PetscCall(DMPrintCellMatrix(cell, name, totDim, totDim, &elemMat[cind * totDim * totDim]));
5899e8e188d2SZach Atkins         PetscCall(DMPlexMatSetClosure_Internal(dm, section, globalSection, mesh->useMatClPerm, Jac, cell, &elemMat[cind * totDim * totDim], ADD_VALUES));
59003e9753d6SMatthew G. Knepley       }
59019566063dSJacob Faibussowitsch       if (mesh->printFEM > 1) PetscCall(DMPrintCellMatrix(cell, name, totDim, totDim, &elemMatP[cind * totDim * totDim]));
5902be62b2b4SMatthew G. Knepley       PetscCall(DMPlexMatSetClosure_Internal(dm, section, globalSection, mesh->useMatClPerm, JacP, cell, &elemMatP[cind * totDim * totDim], ADD_VALUES));
59033e9753d6SMatthew G. Knepley     } else {
59043e9753d6SMatthew G. Knepley       if (hasJac) {
59059566063dSJacob Faibussowitsch         if (mesh->printFEM > 1) PetscCall(DMPrintCellMatrix(cell, name, totDim, totDim, &elemMat[cind * totDim * totDim]));
5906e8e188d2SZach Atkins         PetscCall(DMPlexMatSetClosure_Internal(dm, section, globalSection, mesh->useMatClPerm, JacP, cell, &elemMat[cind * totDim * totDim], ADD_VALUES));
59073e9753d6SMatthew G. Knepley       }
59083e9753d6SMatthew G. Knepley     }
59093e9753d6SMatthew G. Knepley   }
59109566063dSJacob Faibussowitsch   PetscCall(ISRestorePointRange(cellIS, &cStart, &cEnd, &cells));
59119566063dSJacob Faibussowitsch   if (hasFV) PetscCall(MatSetOption(JacP, MAT_IGNORE_ZERO_ENTRIES, PETSC_FALSE));
59129566063dSJacob Faibussowitsch   PetscCall(PetscFree5(u, u_t, elemMat, elemMatP, elemMatD));
59133e9753d6SMatthew G. Knepley   if (dmAux) {
59149566063dSJacob Faibussowitsch     PetscCall(PetscFree(a));
59159566063dSJacob Faibussowitsch     PetscCall(DMDestroy(&plex));
59163e9753d6SMatthew G. Knepley   }
59173e9753d6SMatthew G. Knepley   /* Compute boundary integrals */
59189566063dSJacob Faibussowitsch   PetscCall(DMPlexComputeBdJacobian_Internal(dm, X, X_t, t, X_tShift, Jac, JacP, user));
59193e9753d6SMatthew G. Knepley   /* Assemble matrix */
59209371c9d4SSatish Balay end : {
5921e04ae0b4SMatthew G. Knepley   PetscBool assOp = hasJac && hasPrec ? PETSC_TRUE : PETSC_FALSE, gassOp;
5922e04ae0b4SMatthew G. Knepley 
5923712fec58SPierre Jolivet   PetscCall(MPIU_Allreduce(&assOp, &gassOp, 1, MPIU_BOOL, MPI_LOR, PetscObjectComm((PetscObject)dm)));
59243e9753d6SMatthew G. Knepley   if (hasJac && hasPrec) {
59259566063dSJacob Faibussowitsch     PetscCall(MatAssemblyBegin(Jac, MAT_FINAL_ASSEMBLY));
59269566063dSJacob Faibussowitsch     PetscCall(MatAssemblyEnd(Jac, MAT_FINAL_ASSEMBLY));
59273e9753d6SMatthew G. Knepley   }
5928e04ae0b4SMatthew G. Knepley }
59299566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(JacP, MAT_FINAL_ASSEMBLY));
59309566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(JacP, MAT_FINAL_ASSEMBLY));
59319566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(DMPLEX_JacobianFEM, dm, 0, 0, 0));
59323ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
59333e9753d6SMatthew G. Knepley }
59343e9753d6SMatthew G. Knepley 
5935d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeJacobian_Hybrid_Internal(DM dm, PetscFormKey key[], IS cellIS, PetscReal t, PetscReal X_tShift, Vec locX, Vec locX_t, Mat Jac, Mat JacP, void *user)
5936d71ae5a4SJacob Faibussowitsch {
59373e9753d6SMatthew G. Knepley   DM_Plex        *mesh          = (DM_Plex *)dm->data;
59383e9753d6SMatthew G. Knepley   const char     *name          = "Hybrid Jacobian";
5939148442b3SMatthew G. Knepley   DM              dmAux[3]      = {NULL, NULL, NULL};
5940148442b3SMatthew G. Knepley   DMLabel         ghostLabel    = NULL;
59413e9753d6SMatthew G. Knepley   DM              plex          = NULL;
59423e9753d6SMatthew G. Knepley   DM              plexA         = NULL;
5943148442b3SMatthew G. Knepley   PetscDS         ds            = NULL;
594407218a29SMatthew G. Knepley   PetscDS         dsIn          = NULL;
5945148442b3SMatthew G. Knepley   PetscDS         dsAux[3]      = {NULL, NULL, NULL};
5946148442b3SMatthew G. Knepley   Vec             locA[3]       = {NULL, NULL, NULL};
594707218a29SMatthew G. Knepley   DM              dmScale[3]    = {NULL, NULL, NULL};
594807218a29SMatthew G. Knepley   PetscDS         dsScale[3]    = {NULL, NULL, NULL};
594907218a29SMatthew G. Knepley   Vec             locS[3]       = {NULL, NULL, NULL};
59503e9753d6SMatthew G. Knepley   PetscSection    section       = NULL;
5951148442b3SMatthew G. Knepley   PetscSection    sectionAux[3] = {NULL, NULL, NULL};
59523e9753d6SMatthew G. Knepley   DMField         coordField    = NULL;
595307218a29SMatthew G. Knepley   PetscScalar    *a[3]          = {NULL, NULL, NULL};
595407218a29SMatthew G. Knepley   PetscScalar    *s[3]          = {NULL, NULL, NULL};
595507218a29SMatthew G. Knepley   PetscScalar    *u             = NULL, *u_t;
595607218a29SMatthew G. Knepley   PetscScalar    *elemMatNeg, *elemMatPos, *elemMatCoh;
595707218a29SMatthew G. Knepley   PetscScalar    *elemMatNegP, *elemMatPosP, *elemMatCohP;
5958e432b41dSStefano Zampini   PetscSection    globalSection;
59593e9753d6SMatthew G. Knepley   IS              chunkIS;
59603e9753d6SMatthew G. Knepley   const PetscInt *cells;
59613e9753d6SMatthew G. Knepley   PetscInt       *faces;
59623e9753d6SMatthew G. Knepley   PetscInt        cStart, cEnd, numCells;
59633e2b0218SMatthew G. Knepley   PetscInt        Nf, fieldI, fieldJ, totDim, totDimIn, totDimAux[3], totDimScale[3], numChunks, cellChunkSize, chunk;
59643e9753d6SMatthew G. Knepley   PetscInt        maxDegree  = PETSC_MAX_INT;
59653e9753d6SMatthew G. Knepley   PetscQuadrature affineQuad = NULL, *quads = NULL;
59663e9753d6SMatthew G. Knepley   PetscFEGeom    *affineGeom = NULL, **geoms = NULL;
5967e432b41dSStefano Zampini   PetscBool       hasBdJac, hasBdPrec;
59683e9753d6SMatthew G. Knepley 
59693e9753d6SMatthew G. Knepley   PetscFunctionBegin;
59703cc88e6aSStefano Zampini   PetscCall(PetscLogEventBegin(DMPLEX_JacobianFEM, dm, 0, 0, 0));
59713cc88e6aSStefano Zampini   if (!cellIS) goto end;
5972437e83fbSMatthew G. Knepley   PetscCall(ISGetPointRange(cellIS, &cStart, &cEnd, &cells));
5973437e83fbSMatthew G. Knepley   PetscCall(ISGetLocalSize(cellIS, &numCells));
59743cc88e6aSStefano Zampini   if (cStart >= cEnd) goto end;
59755fedec97SMatthew G. Knepley   if ((key[0].label == key[1].label) && (key[0].value == key[1].value) && (key[0].part == key[1].part)) {
59765fedec97SMatthew G. Knepley     const char *name;
59779566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetName((PetscObject)key[0].label, &name));
597863a3b9bcSJacob Faibussowitsch     SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Form keys for each side of a cohesive surface must be different (%s, %" PetscInt_FMT ", %" PetscInt_FMT ")", name, key[0].value, key[0].part);
59795fedec97SMatthew G. Knepley   }
59809566063dSJacob Faibussowitsch   PetscCall(DMConvert(dm, DMPLEX, &plex));
59819566063dSJacob Faibussowitsch   PetscCall(DMGetSection(dm, &section));
59829566063dSJacob Faibussowitsch   PetscCall(DMGetGlobalSection(dm, &globalSection));
59839566063dSJacob Faibussowitsch   PetscCall(DMGetLabel(dm, "ghost", &ghostLabel));
598407218a29SMatthew G. Knepley   PetscCall(DMGetCellDS(dm, cells ? cells[cStart] : cStart, &ds, &dsIn));
59859566063dSJacob Faibussowitsch   PetscCall(PetscDSGetNumFields(ds, &Nf));
59869566063dSJacob Faibussowitsch   PetscCall(PetscDSGetTotalDimension(ds, &totDim));
598707218a29SMatthew G. Knepley   PetscCall(PetscDSGetTotalDimension(dsIn, &totDimIn));
59889566063dSJacob Faibussowitsch   PetscCall(PetscDSHasBdJacobian(ds, &hasBdJac));
59899566063dSJacob Faibussowitsch   PetscCall(PetscDSHasBdJacobianPreconditioner(ds, &hasBdPrec));
59909566063dSJacob Faibussowitsch   PetscCall(DMGetAuxiliaryVec(dm, key[2].label, key[2].value, key[2].part, &locA[2]));
5991148442b3SMatthew G. Knepley   if (locA[2]) {
59921059d808SMatthew G. Knepley     const PetscInt cellStart = cells ? cells[cStart] : cStart;
59931059d808SMatthew G. Knepley 
59949566063dSJacob Faibussowitsch     PetscCall(VecGetDM(locA[2], &dmAux[2]));
59959566063dSJacob Faibussowitsch     PetscCall(DMConvert(dmAux[2], DMPLEX, &plexA));
59969566063dSJacob Faibussowitsch     PetscCall(DMGetSection(dmAux[2], &sectionAux[2]));
599707218a29SMatthew G. Knepley     PetscCall(DMGetCellDS(dmAux[2], cellStart, &dsAux[2], NULL));
59989566063dSJacob Faibussowitsch     PetscCall(PetscDSGetTotalDimension(dsAux[2], &totDimAux[2]));
5999148442b3SMatthew G. Knepley     {
6000148442b3SMatthew G. Knepley       const PetscInt *cone;
6001148442b3SMatthew G. Knepley       PetscInt        c;
6002148442b3SMatthew G. Knepley 
60031059d808SMatthew G. Knepley       PetscCall(DMPlexGetCone(dm, cellStart, &cone));
6004148442b3SMatthew G. Knepley       for (c = 0; c < 2; ++c) {
6005148442b3SMatthew G. Knepley         const PetscInt *support;
6006148442b3SMatthew G. Knepley         PetscInt        ssize, s;
6007148442b3SMatthew G. Knepley 
60089566063dSJacob Faibussowitsch         PetscCall(DMPlexGetSupport(dm, cone[c], &support));
60099566063dSJacob Faibussowitsch         PetscCall(DMPlexGetSupportSize(dm, cone[c], &ssize));
60101059d808SMatthew G. Knepley         PetscCheck(ssize == 2, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Face %" PetscInt_FMT " from cell %" PetscInt_FMT " has support size %" PetscInt_FMT " != 2", cone[c], cellStart, ssize);
60111059d808SMatthew G. Knepley         if (support[0] == cellStart) s = 1;
60121059d808SMatthew G. Knepley         else if (support[1] == cellStart) s = 0;
60131059d808SMatthew G. Knepley         else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Face %" PetscInt_FMT " does not have cell %" PetscInt_FMT " in its support", cone[c], cellStart);
60149566063dSJacob Faibussowitsch         PetscCall(DMGetAuxiliaryVec(dm, key[c].label, key[c].value, key[c].part, &locA[c]));
60159566063dSJacob Faibussowitsch         if (locA[c]) PetscCall(VecGetDM(locA[c], &dmAux[c]));
6016ad540459SPierre Jolivet         else dmAux[c] = dmAux[2];
601707218a29SMatthew G. Knepley         PetscCall(DMGetCellDS(dmAux[c], support[s], &dsAux[c], NULL));
60189566063dSJacob Faibussowitsch         PetscCall(PetscDSGetTotalDimension(dsAux[c], &totDimAux[c]));
6019148442b3SMatthew G. Knepley       }
6020148442b3SMatthew G. Knepley     }
60213e9753d6SMatthew G. Knepley   }
602207218a29SMatthew G. Knepley   /* Handle mass matrix scaling
602307218a29SMatthew G. Knepley        The field in key[2] is the field to be scaled, and the scaling field is the first in the dsScale */
602407218a29SMatthew G. Knepley   PetscCall(DMGetAuxiliaryVec(dm, key[2].label, -key[2].value, key[2].part, &locS[2]));
602507218a29SMatthew G. Knepley   if (locS[2]) {
60263e2b0218SMatthew G. Knepley     const PetscInt cellStart = cells ? cells[cStart] : cStart;
602707218a29SMatthew G. Knepley     PetscInt       Nb, Nbs;
602807218a29SMatthew G. Knepley 
602907218a29SMatthew G. Knepley     PetscCall(VecGetDM(locS[2], &dmScale[2]));
603007218a29SMatthew G. Knepley     PetscCall(DMGetCellDS(dmScale[2], cells ? cells[cStart] : cStart, &dsScale[2], NULL));
60313e2b0218SMatthew G. Knepley     PetscCall(PetscDSGetTotalDimension(dsScale[2], &totDimScale[2]));
603207218a29SMatthew G. Knepley     // BRAD: This is not set correctly
603307218a29SMatthew G. Knepley     key[2].field = 2;
603407218a29SMatthew G. Knepley     PetscCall(PetscDSGetFieldSize(ds, key[2].field, &Nb));
603507218a29SMatthew G. Knepley     PetscCall(PetscDSGetFieldSize(dsScale[2], 0, &Nbs));
603607218a29SMatthew G. Knepley     PetscCheck(Nb == Nbs, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "Field %" PetscInt_FMT " of size %" PetscInt_FMT " cannot be scaled by field of size %" PetscInt_FMT, key[2].field, Nb, Nbs);
60373e2b0218SMatthew G. Knepley     {
60383e2b0218SMatthew G. Knepley       const PetscInt *cone;
60393e2b0218SMatthew G. Knepley       PetscInt        c;
60403e2b0218SMatthew G. Knepley 
60413e2b0218SMatthew G. Knepley       locS[1] = locS[0] = locS[2];
60423e2b0218SMatthew G. Knepley       dmScale[1] = dmScale[0] = dmScale[2];
60433e2b0218SMatthew G. Knepley       PetscCall(DMPlexGetCone(dm, cellStart, &cone));
60443e2b0218SMatthew G. Knepley       for (c = 0; c < 2; ++c) {
60453e2b0218SMatthew G. Knepley         const PetscInt *support;
60463e2b0218SMatthew G. Knepley         PetscInt        ssize, s;
60473e2b0218SMatthew G. Knepley 
60483e2b0218SMatthew G. Knepley         PetscCall(DMPlexGetSupport(dm, cone[c], &support));
60493e2b0218SMatthew G. Knepley         PetscCall(DMPlexGetSupportSize(dm, cone[c], &ssize));
60503e2b0218SMatthew G. Knepley         PetscCheck(ssize == 2, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Face %" PetscInt_FMT " from cell %" PetscInt_FMT " has support size %" PetscInt_FMT " != 2", cone[c], cellStart, ssize);
60513e2b0218SMatthew G. Knepley         if (support[0] == cellStart) s = 1;
60523e2b0218SMatthew G. Knepley         else if (support[1] == cellStart) s = 0;
60533e2b0218SMatthew G. Knepley         else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Face %" PetscInt_FMT " does not have cell %" PetscInt_FMT " in its support", cone[c], cellStart);
60543e2b0218SMatthew G. Knepley         PetscCall(DMGetCellDS(dmScale[c], support[s], &dsScale[c], NULL));
60553e2b0218SMatthew G. Knepley         PetscCall(PetscDSGetTotalDimension(dsScale[c], &totDimScale[c]));
60563e2b0218SMatthew G. Knepley       }
60573e2b0218SMatthew G. Knepley     }
605807218a29SMatthew G. Knepley   }
605907218a29SMatthew G. Knepley   /* 2: Setup geometric data */
60609566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateField(dm, &coordField));
60619566063dSJacob Faibussowitsch   PetscCall(DMFieldGetDegree(coordField, cellIS, NULL, &maxDegree));
60623e9753d6SMatthew G. Knepley   if (maxDegree > 1) {
60633e9753d6SMatthew G. Knepley     PetscInt f;
60649566063dSJacob Faibussowitsch     PetscCall(PetscCalloc2(Nf, &quads, Nf, &geoms));
60653e9753d6SMatthew G. Knepley     for (f = 0; f < Nf; ++f) {
60663e9753d6SMatthew G. Knepley       PetscFE fe;
60673e9753d6SMatthew G. Knepley 
60689566063dSJacob Faibussowitsch       PetscCall(PetscDSGetDiscretization(ds, f, (PetscObject *)&fe));
60693e9753d6SMatthew G. Knepley       if (fe) {
60709566063dSJacob Faibussowitsch         PetscCall(PetscFEGetQuadrature(fe, &quads[f]));
60719566063dSJacob Faibussowitsch         PetscCall(PetscObjectReference((PetscObject)quads[f]));
60723e9753d6SMatthew G. Knepley       }
60733e9753d6SMatthew G. Knepley     }
60743e9753d6SMatthew G. Knepley   }
607507218a29SMatthew G. Knepley   /* Loop over chunks */
60763e9753d6SMatthew G. Knepley   cellChunkSize = numCells;
60773e9753d6SMatthew G. Knepley   numChunks     = !numCells ? 0 : PetscCeilReal(((PetscReal)numCells) / cellChunkSize);
607807218a29SMatthew G. Knepley   PetscCall(PetscCalloc1(2 * cellChunkSize, &faces));
6079a4158a15SMatthew G. Knepley   PetscCall(ISCreateGeneral(PETSC_COMM_SELF, 1 * cellChunkSize, faces, PETSC_USE_POINTER, &chunkIS));
608007218a29SMatthew G. Knepley   /* Extract field coefficients */
608107218a29SMatthew G. Knepley   /* NOTE This needs the end cap faces to have identical orientations */
608207218a29SMatthew G. Knepley   PetscCall(DMPlexGetHybridCellFields(dm, cellIS, locX, locX_t, locA[2], &u, &u_t, &a[2]));
608307218a29SMatthew G. Knepley   PetscCall(DMPlexGetHybridFields(dm, dmAux, dsAux, cellIS, locA, PETSC_TRUE, a));
60848bf0a22dSMatthew G. Knepley   PetscCall(DMPlexGetHybridFields(dm, dmScale, dsScale, cellIS, locS, PETSC_TRUE, s));
608507218a29SMatthew G. Knepley   PetscCall(DMGetWorkArray(dm, hasBdJac ? cellChunkSize * totDim * totDim : 0, MPIU_SCALAR, &elemMatNeg));
608607218a29SMatthew G. Knepley   PetscCall(DMGetWorkArray(dm, hasBdJac ? cellChunkSize * totDim * totDim : 0, MPIU_SCALAR, &elemMatPos));
608707218a29SMatthew G. Knepley   PetscCall(DMGetWorkArray(dm, hasBdJac ? cellChunkSize * totDim * totDim : 0, MPIU_SCALAR, &elemMatCoh));
608807218a29SMatthew G. Knepley   PetscCall(DMGetWorkArray(dm, hasBdPrec ? cellChunkSize * totDim * totDim : 0, MPIU_SCALAR, &elemMatNegP));
608907218a29SMatthew G. Knepley   PetscCall(DMGetWorkArray(dm, hasBdPrec ? cellChunkSize * totDim * totDim : 0, MPIU_SCALAR, &elemMatPosP));
609007218a29SMatthew G. Knepley   PetscCall(DMGetWorkArray(dm, hasBdPrec ? cellChunkSize * totDim * totDim : 0, MPIU_SCALAR, &elemMatCohP));
60913e9753d6SMatthew G. Knepley   for (chunk = 0; chunk < numChunks; ++chunk) {
60923e9753d6SMatthew G. Knepley     PetscInt cS = cStart + chunk * cellChunkSize, cE = PetscMin(cS + cellChunkSize, cEnd), numCells = cE - cS, c;
60933e9753d6SMatthew G. Knepley 
609407218a29SMatthew G. Knepley     if (hasBdJac) {
609507218a29SMatthew G. Knepley       PetscCall(PetscArrayzero(elemMatNeg, cellChunkSize * totDim * totDim));
609607218a29SMatthew G. Knepley       PetscCall(PetscArrayzero(elemMatPos, cellChunkSize * totDim * totDim));
609707218a29SMatthew G. Knepley       PetscCall(PetscArrayzero(elemMatCoh, cellChunkSize * totDim * totDim));
609807218a29SMatthew G. Knepley     }
609907218a29SMatthew G. Knepley     if (hasBdPrec) {
610007218a29SMatthew G. Knepley       PetscCall(PetscArrayzero(elemMatNegP, cellChunkSize * totDim * totDim));
610107218a29SMatthew G. Knepley       PetscCall(PetscArrayzero(elemMatPosP, cellChunkSize * totDim * totDim));
610207218a29SMatthew G. Knepley       PetscCall(PetscArrayzero(elemMatCohP, cellChunkSize * totDim * totDim));
610307218a29SMatthew G. Knepley     }
61043e9753d6SMatthew G. Knepley     /* Get faces */
61053e9753d6SMatthew G. Knepley     for (c = cS; c < cE; ++c) {
61063e9753d6SMatthew G. Knepley       const PetscInt  cell = cells ? cells[c] : c;
61073e9753d6SMatthew G. Knepley       const PetscInt *cone;
61089566063dSJacob Faibussowitsch       PetscCall(DMPlexGetCone(plex, cell, &cone));
610907218a29SMatthew G. Knepley       faces[(c - cS) * 2 + 0] = cone[0];
611007218a29SMatthew G. Knepley       faces[(c - cS) * 2 + 1] = cone[1];
61113e9753d6SMatthew G. Knepley     }
611207218a29SMatthew G. Knepley     PetscCall(ISGeneralSetIndices(chunkIS, 2 * cellChunkSize, faces, PETSC_USE_POINTER));
61133e9753d6SMatthew G. Knepley     if (maxDegree <= 1) {
61149566063dSJacob Faibussowitsch       if (!affineQuad) PetscCall(DMFieldCreateDefaultQuadrature(coordField, chunkIS, &affineQuad));
61159566063dSJacob Faibussowitsch       if (affineQuad) PetscCall(DMSNESGetFEGeom(coordField, chunkIS, affineQuad, PETSC_TRUE, &affineGeom));
61163e9753d6SMatthew G. Knepley     } else {
61173e9753d6SMatthew G. Knepley       PetscInt f;
61183e9753d6SMatthew G. Knepley       for (f = 0; f < Nf; ++f) {
61199566063dSJacob Faibussowitsch         if (quads[f]) PetscCall(DMSNESGetFEGeom(coordField, chunkIS, quads[f], PETSC_TRUE, &geoms[f]));
61203e9753d6SMatthew G. Knepley       }
61213e9753d6SMatthew G. Knepley     }
61223e9753d6SMatthew G. Knepley 
61233e9753d6SMatthew G. Knepley     for (fieldI = 0; fieldI < Nf; ++fieldI) {
61243e9753d6SMatthew G. Knepley       PetscFE         feI;
61253e9753d6SMatthew G. Knepley       PetscFEGeom    *geom      = affineGeom ? affineGeom : geoms[fieldI];
61263e9753d6SMatthew G. Knepley       PetscFEGeom    *chunkGeom = NULL, *remGeom = NULL;
61273e9753d6SMatthew G. Knepley       PetscQuadrature quad = affineQuad ? affineQuad : quads[fieldI];
61283e9753d6SMatthew G. Knepley       PetscInt        numChunks, numBatches, batchSize, numBlocks, blockSize, Ne, Nr, offset, Nq, Nb;
61295fedec97SMatthew G. Knepley       PetscBool       isCohesiveField;
61303e9753d6SMatthew G. Knepley 
61319566063dSJacob Faibussowitsch       PetscCall(PetscDSGetDiscretization(ds, fieldI, (PetscObject *)&feI));
61323e9753d6SMatthew G. Knepley       if (!feI) continue;
61339566063dSJacob Faibussowitsch       PetscCall(PetscFEGetTileSizes(feI, NULL, &numBlocks, NULL, &numBatches));
61349566063dSJacob Faibussowitsch       PetscCall(PetscQuadratureGetData(quad, NULL, NULL, &Nq, NULL, NULL));
61359566063dSJacob Faibussowitsch       PetscCall(PetscFEGetDimension(feI, &Nb));
61363e9753d6SMatthew G. Knepley       blockSize = Nb;
61373e9753d6SMatthew G. Knepley       batchSize = numBlocks * blockSize;
61389566063dSJacob Faibussowitsch       PetscCall(PetscFESetTileSizes(feI, blockSize, numBlocks, batchSize, numBatches));
61393e9753d6SMatthew G. Knepley       numChunks = numCells / (numBatches * batchSize);
61403e9753d6SMatthew G. Knepley       Ne        = numChunks * numBatches * batchSize;
61413e9753d6SMatthew G. Knepley       Nr        = numCells % (numBatches * batchSize);
61423e9753d6SMatthew G. Knepley       offset    = numCells - Nr;
614307218a29SMatthew G. Knepley       PetscCall(PetscFEGeomGetChunk(geom, 0, offset * 2, &chunkGeom));
614407218a29SMatthew G. Knepley       PetscCall(PetscFEGeomGetChunk(geom, offset * 2, numCells * 2, &remGeom));
61459566063dSJacob Faibussowitsch       PetscCall(PetscDSGetCohesive(ds, fieldI, &isCohesiveField));
61463e9753d6SMatthew G. Knepley       for (fieldJ = 0; fieldJ < Nf; ++fieldJ) {
61473e9753d6SMatthew G. Knepley         PetscFE feJ;
61483e9753d6SMatthew G. Knepley 
61499566063dSJacob Faibussowitsch         PetscCall(PetscDSGetDiscretization(ds, fieldJ, (PetscObject *)&feJ));
61503e9753d6SMatthew G. Knepley         if (!feJ) continue;
6151148442b3SMatthew G. Knepley         key[0].field = fieldI * Nf + fieldJ;
6152148442b3SMatthew G. Knepley         key[1].field = fieldI * Nf + fieldJ;
61535fedec97SMatthew G. Knepley         key[2].field = fieldI * Nf + fieldJ;
6154148442b3SMatthew G. Knepley         if (hasBdJac) {
615507218a29SMatthew G. Knepley           PetscCall(PetscFEIntegrateHybridJacobian(ds, dsIn, PETSCFE_JACOBIAN, key[0], 0, Ne, chunkGeom, u, u_t, dsAux[0], a[0], t, X_tShift, elemMatNeg));
61568e3a54c0SPierre Jolivet           PetscCall(PetscFEIntegrateHybridJacobian(ds, dsIn, PETSCFE_JACOBIAN, key[0], 0, Nr, remGeom, &u[offset * totDimIn], PetscSafePointerPlusOffset(u_t, offset * totDimIn), dsAux[0], PetscSafePointerPlusOffset(a[0], offset * totDimAux[0]), t, X_tShift, &elemMatNeg[offset * totDim * totDim]));
615707218a29SMatthew G. Knepley           PetscCall(PetscFEIntegrateHybridJacobian(ds, dsIn, PETSCFE_JACOBIAN, key[1], 1, Ne, chunkGeom, u, u_t, dsAux[1], a[1], t, X_tShift, elemMatPos));
61588e3a54c0SPierre Jolivet           PetscCall(PetscFEIntegrateHybridJacobian(ds, dsIn, PETSCFE_JACOBIAN, key[1], 1, Nr, remGeom, &u[offset * totDimIn], PetscSafePointerPlusOffset(u_t, offset * totDimIn), dsAux[1], PetscSafePointerPlusOffset(a[1], offset * totDimAux[1]), t, X_tShift, &elemMatPos[offset * totDim * totDim]));
6159148442b3SMatthew G. Knepley         }
6160148442b3SMatthew G. Knepley         if (hasBdPrec) {
616107218a29SMatthew G. Knepley           PetscCall(PetscFEIntegrateHybridJacobian(ds, dsIn, PETSCFE_JACOBIAN_PRE, key[0], 0, Ne, chunkGeom, u, u_t, dsAux[0], a[0], t, X_tShift, elemMatNegP));
61628e3a54c0SPierre Jolivet           PetscCall(PetscFEIntegrateHybridJacobian(ds, dsIn, PETSCFE_JACOBIAN_PRE, key[0], 0, Nr, remGeom, &u[offset * totDimIn], PetscSafePointerPlusOffset(u_t, offset * totDimIn), dsAux[0], &a[0][offset * totDimAux[0]], t, X_tShift, &elemMatNegP[offset * totDim * totDim]));
616307218a29SMatthew G. Knepley           PetscCall(PetscFEIntegrateHybridJacobian(ds, dsIn, PETSCFE_JACOBIAN_PRE, key[1], 1, Ne, chunkGeom, u, u_t, dsAux[1], a[1], t, X_tShift, elemMatPosP));
61648e3a54c0SPierre Jolivet           PetscCall(PetscFEIntegrateHybridJacobian(ds, dsIn, PETSCFE_JACOBIAN_PRE, key[1], 1, Nr, remGeom, &u[offset * totDimIn], PetscSafePointerPlusOffset(u_t, offset * totDimIn), dsAux[1], &a[1][offset * totDimAux[1]], t, X_tShift, &elemMatPosP[offset * totDim * totDim]));
6165148442b3SMatthew G. Knepley         }
61665fedec97SMatthew G. Knepley         if (hasBdJac) {
616707218a29SMatthew G. Knepley           PetscCall(PetscFEIntegrateHybridJacobian(ds, dsIn, PETSCFE_JACOBIAN, key[2], 2, Ne, chunkGeom, u, u_t, dsAux[2], a[2], t, X_tShift, elemMatCoh));
61688e3a54c0SPierre Jolivet           PetscCall(PetscFEIntegrateHybridJacobian(ds, dsIn, PETSCFE_JACOBIAN, key[2], 2, Nr, remGeom, &u[offset * totDimIn], PetscSafePointerPlusOffset(u_t, offset * totDimIn), dsAux[2], PetscSafePointerPlusOffset(a[2], offset * totDimAux[2]), t, X_tShift, &elemMatCoh[offset * totDim * totDim]));
6169148442b3SMatthew G. Knepley         }
61705fedec97SMatthew G. Knepley         if (hasBdPrec) {
617107218a29SMatthew G. Knepley           PetscCall(PetscFEIntegrateHybridJacobian(ds, dsIn, PETSCFE_JACOBIAN_PRE, key[2], 2, Ne, chunkGeom, u, u_t, dsAux[2], a[2], t, X_tShift, elemMatCohP));
61728e3a54c0SPierre Jolivet           PetscCall(PetscFEIntegrateHybridJacobian(ds, dsIn, PETSCFE_JACOBIAN_PRE, key[2], 2, Nr, remGeom, &u[offset * totDimIn], PetscSafePointerPlusOffset(u_t, offset * totDimIn), dsAux[2], &a[2][offset * totDimAux[2]], t, X_tShift, &elemMatCohP[offset * totDim * totDim]));
61733e9753d6SMatthew G. Knepley         }
61743e9753d6SMatthew G. Knepley       }
61759566063dSJacob Faibussowitsch       PetscCall(PetscFEGeomRestoreChunk(geom, offset, numCells, &remGeom));
61769566063dSJacob Faibussowitsch       PetscCall(PetscFEGeomRestoreChunk(geom, 0, offset, &chunkGeom));
61773e9753d6SMatthew G. Knepley     }
61783e9753d6SMatthew G. Knepley     /* Insert values into matrix */
61793e9753d6SMatthew G. Knepley     for (c = cS; c < cE; ++c) {
61803e9753d6SMatthew G. Knepley       const PetscInt cell = cells ? cells[c] : c;
618107218a29SMatthew G. Knepley       const PetscInt cind = c - cS, coff = cind * totDim * totDim;
618207218a29SMatthew G. Knepley       PetscInt       i, j;
61833e9753d6SMatthew G. Knepley 
618407218a29SMatthew G. Knepley       /* Scale element values */
618507218a29SMatthew G. Knepley       if (locS[0]) {
61863e2b0218SMatthew G. Knepley         PetscInt  Nb, soff = cind * totDimScale[0], off = 0;
618707218a29SMatthew G. Knepley         PetscBool cohesive;
618807218a29SMatthew G. Knepley 
618907218a29SMatthew G. Knepley         for (fieldI = 0; fieldI < Nf; ++fieldI) {
619007218a29SMatthew G. Knepley           PetscCall(PetscDSGetFieldSize(ds, fieldI, &Nb));
619107218a29SMatthew G. Knepley           PetscCall(PetscDSGetCohesive(ds, fieldI, &cohesive));
619207218a29SMatthew G. Knepley 
619307218a29SMatthew G. Knepley           if (fieldI == key[2].field) {
619407218a29SMatthew G. Knepley             PetscCheck(cohesive, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Scaling should not happen for face fields");
61958bf0a22dSMatthew G. Knepley             for (i = 0; i < Nb; ++i) {
619607218a29SMatthew G. Knepley               for (j = 0; j < totDim; ++j) elemMatCoh[coff + (off + i) * totDim + j] += s[0][soff + i] * elemMatNeg[coff + (off + i) * totDim + j] + s[1][soff + i] * elemMatPos[coff + (off + i) * totDim + j];
61978bf0a22dSMatthew G. Knepley               if (hasBdPrec)
61988bf0a22dSMatthew G. Knepley                 for (j = 0; j < totDim; ++j) elemMatCohP[coff + (off + i) * totDim + j] += s[0][soff + i] * elemMatNegP[coff + (off + i) * totDim + j] + s[1][soff + i] * elemMatPosP[coff + (off + i) * totDim + j];
61998bf0a22dSMatthew G. Knepley             }
620007218a29SMatthew G. Knepley             off += Nb;
620107218a29SMatthew G. Knepley           } else {
620207218a29SMatthew G. Knepley             const PetscInt N = cohesive ? Nb : Nb * 2;
620307218a29SMatthew G. Knepley 
62048bf0a22dSMatthew G. Knepley             for (i = 0; i < N; ++i) {
620507218a29SMatthew G. Knepley               for (j = 0; j < totDim; ++j) elemMatCoh[coff + (off + i) * totDim + j] += elemMatNeg[coff + (off + i) * totDim + j] + elemMatPos[coff + (off + i) * totDim + j];
62068bf0a22dSMatthew G. Knepley               if (hasBdPrec)
62078bf0a22dSMatthew G. Knepley                 for (j = 0; j < totDim; ++j) elemMatCohP[coff + (off + i) * totDim + j] += elemMatNegP[coff + (off + i) * totDim + j] + elemMatPosP[coff + (off + i) * totDim + j];
62088bf0a22dSMatthew G. Knepley             }
620907218a29SMatthew G. Knepley             off += N;
621007218a29SMatthew G. Knepley           }
621107218a29SMatthew G. Knepley         }
621207218a29SMatthew G. Knepley       } else {
621307218a29SMatthew G. Knepley         for (i = 0; i < totDim * totDim; ++i) elemMatCoh[coff + i] += elemMatNeg[coff + i] + elemMatPos[coff + i];
62148bf0a22dSMatthew G. Knepley         if (hasBdPrec)
62158bf0a22dSMatthew G. Knepley           for (i = 0; i < totDim * totDim; ++i) elemMatCohP[coff + i] += elemMatNegP[coff + i] + elemMatPosP[coff + i];
621607218a29SMatthew G. Knepley       }
62173e9753d6SMatthew G. Knepley       if (hasBdPrec) {
62183e9753d6SMatthew G. Knepley         if (hasBdJac) {
621907218a29SMatthew G. Knepley           if (mesh->printFEM > 1) PetscCall(DMPrintCellMatrix(cell, name, totDim, totDim, &elemMatCoh[cind * totDim * totDim]));
6220e8e188d2SZach Atkins           PetscCall(DMPlexMatSetClosure_Internal(plex, section, globalSection, mesh->useMatClPerm, Jac, cell, &elemMatCoh[cind * totDim * totDim], ADD_VALUES));
62213e9753d6SMatthew G. Knepley         }
622207218a29SMatthew G. Knepley         if (mesh->printFEM > 1) PetscCall(DMPrintCellMatrix(cell, name, totDim, totDim, &elemMatCohP[cind * totDim * totDim]));
622307218a29SMatthew G. Knepley         PetscCall(DMPlexMatSetClosure(plex, section, globalSection, JacP, cell, &elemMatCohP[cind * totDim * totDim], ADD_VALUES));
62243e9753d6SMatthew G. Knepley       } else if (hasBdJac) {
622507218a29SMatthew G. Knepley         if (mesh->printFEM > 1) PetscCall(DMPrintCellMatrix(cell, name, totDim, totDim, &elemMatCoh[cind * totDim * totDim]));
6226e8e188d2SZach Atkins         PetscCall(DMPlexMatSetClosure_Internal(plex, section, globalSection, mesh->useMatClPerm, JacP, cell, &elemMatCoh[cind * totDim * totDim], ADD_VALUES));
62273e9753d6SMatthew G. Knepley       }
62283e9753d6SMatthew G. Knepley     }
62293e9753d6SMatthew G. Knepley   }
62309566063dSJacob Faibussowitsch   PetscCall(DMPlexRestoreCellFields(dm, cellIS, locX, locX_t, locA[2], &u, &u_t, &a[2]));
623107218a29SMatthew G. Knepley   PetscCall(DMPlexRestoreHybridFields(dm, dmAux, dsAux, cellIS, locA, PETSC_TRUE, a));
623207218a29SMatthew G. Knepley   PetscCall(DMRestoreWorkArray(dm, hasBdJac ? cellChunkSize * totDim * totDim : 0, MPIU_SCALAR, &elemMatNeg));
623307218a29SMatthew G. Knepley   PetscCall(DMRestoreWorkArray(dm, hasBdJac ? cellChunkSize * totDim * totDim : 0, MPIU_SCALAR, &elemMatPos));
623407218a29SMatthew G. Knepley   PetscCall(DMRestoreWorkArray(dm, hasBdJac ? cellChunkSize * totDim * totDim : 0, MPIU_SCALAR, &elemMatCoh));
623507218a29SMatthew G. Knepley   PetscCall(DMRestoreWorkArray(dm, hasBdPrec ? cellChunkSize * totDim * totDim : 0, MPIU_SCALAR, &elemMatNegP));
623607218a29SMatthew G. Knepley   PetscCall(DMRestoreWorkArray(dm, hasBdPrec ? cellChunkSize * totDim * totDim : 0, MPIU_SCALAR, &elemMatPosP));
623707218a29SMatthew G. Knepley   PetscCall(DMRestoreWorkArray(dm, hasBdPrec ? cellChunkSize * totDim * totDim : 0, MPIU_SCALAR, &elemMatCohP));
62389566063dSJacob Faibussowitsch   PetscCall(PetscFree(faces));
62399566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&chunkIS));
62409566063dSJacob Faibussowitsch   PetscCall(ISRestorePointRange(cellIS, &cStart, &cEnd, &cells));
62413e9753d6SMatthew G. Knepley   if (maxDegree <= 1) {
62429566063dSJacob Faibussowitsch     PetscCall(DMSNESRestoreFEGeom(coordField, cellIS, affineQuad, PETSC_FALSE, &affineGeom));
62439566063dSJacob Faibussowitsch     PetscCall(PetscQuadratureDestroy(&affineQuad));
62443e9753d6SMatthew G. Knepley   } else {
62453e9753d6SMatthew G. Knepley     PetscInt f;
62463e9753d6SMatthew G. Knepley     for (f = 0; f < Nf; ++f) {
62479566063dSJacob Faibussowitsch       if (geoms) PetscCall(DMSNESRestoreFEGeom(coordField, cellIS, quads[f], PETSC_FALSE, &geoms[f]));
62489566063dSJacob Faibussowitsch       if (quads) PetscCall(PetscQuadratureDestroy(&quads[f]));
62493e9753d6SMatthew G. Knepley     }
62509566063dSJacob Faibussowitsch     PetscCall(PetscFree2(quads, geoms));
62513e9753d6SMatthew G. Knepley   }
62529566063dSJacob Faibussowitsch   if (dmAux[2]) PetscCall(DMDestroy(&plexA));
62539566063dSJacob Faibussowitsch   PetscCall(DMDestroy(&plex));
62543cc88e6aSStefano Zampini end:
62559566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(DMPLEX_JacobianFEM, dm, 0, 0, 0));
62563ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
62573e9753d6SMatthew G. Knepley }
62588e3a2eefSMatthew G. Knepley 
62598e3a2eefSMatthew G. Knepley /*
62608e3a2eefSMatthew G. Knepley   DMPlexComputeJacobian_Action_Internal - Form the local portion of the Jacobian action Z = J(X) Y at the local solution X using pointwise functions specified by the user.
62618e3a2eefSMatthew G. Knepley 
62628e3a2eefSMatthew G. Knepley   Input Parameters:
62638e3a2eefSMatthew G. Knepley + dm     - The mesh
6264baca6076SPierre Jolivet . key    - The PetscWeakFormKey indicating where integration should happen
626506ad1575SMatthew G. Knepley . cellIS - The cells to integrate over
62668e3a2eefSMatthew G. Knepley . t      - The time
6267145b44c9SPierre Jolivet . X_tShift - The multiplier for the Jacobian with respect to X_t
62688e3a2eefSMatthew G. Knepley . X      - Local solution vector
62698e3a2eefSMatthew G. Knepley . X_t    - Time-derivative of the local solution vector
62708e3a2eefSMatthew G. Knepley . Y      - Local input vector
627106ad1575SMatthew G. Knepley - user   - the user context
62728e3a2eefSMatthew G. Knepley 
62738e3a2eefSMatthew G. Knepley   Output Parameter:
62748e3a2eefSMatthew G. Knepley . Z - Local output vector
62758e3a2eefSMatthew G. Knepley 
62768e3a2eefSMatthew G. Knepley   Note:
62778e3a2eefSMatthew G. Knepley   We form the residual one batch of elements at a time. This allows us to offload work onto an accelerator,
62788e3a2eefSMatthew G. Knepley   like a GPU, or vectorize on a multicore machine.
62798e3a2eefSMatthew G. Knepley */
6280d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeJacobian_Action_Internal(DM dm, PetscFormKey key, IS cellIS, PetscReal t, PetscReal X_tShift, Vec X, Vec X_t, Vec Y, Vec Z, void *user)
6281d71ae5a4SJacob Faibussowitsch {
62828e3a2eefSMatthew G. Knepley   DM_Plex        *mesh  = (DM_Plex *)dm->data;
62838e3a2eefSMatthew G. Knepley   const char     *name  = "Jacobian";
62848e3a2eefSMatthew G. Knepley   DM              dmAux = NULL, plex, plexAux = NULL;
62858e3a2eefSMatthew G. Knepley   DMEnclosureType encAux;
62868e3a2eefSMatthew G. Knepley   Vec             A;
62878e3a2eefSMatthew G. Knepley   DMField         coordField;
62888e3a2eefSMatthew G. Knepley   PetscDS         prob, probAux = NULL;
62898e3a2eefSMatthew G. Knepley   PetscQuadrature quad;
62908e3a2eefSMatthew G. Knepley   PetscSection    section, globalSection, sectionAux;
62918e3a2eefSMatthew G. Knepley   PetscScalar    *elemMat, *elemMatD, *u, *u_t, *a = NULL, *y, *z;
62928e3a2eefSMatthew G. Knepley   const PetscInt *cells;
62938e3a2eefSMatthew G. Knepley   PetscInt        Nf, fieldI, fieldJ;
62948e3a2eefSMatthew G. Knepley   PetscInt        totDim, totDimAux = 0, cStart, cEnd, numCells, c;
62958e3a2eefSMatthew G. Knepley   PetscBool       hasDyn;
62968e3a2eefSMatthew G. Knepley 
62978e3a2eefSMatthew G. Knepley   PetscFunctionBegin;
629821d77094SMatthew G. Knepley   if (!cellIS) PetscFunctionReturn(PETSC_SUCCESS);
62999566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(DMPLEX_JacobianFEM, dm, 0, 0, 0));
63009566063dSJacob Faibussowitsch   PetscCall(DMConvert(dm, DMPLEX, &plex));
63019566063dSJacob Faibussowitsch   PetscCall(ISGetLocalSize(cellIS, &numCells));
63029566063dSJacob Faibussowitsch   PetscCall(ISGetPointRange(cellIS, &cStart, &cEnd, &cells));
63039566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dm, &section));
63049566063dSJacob Faibussowitsch   PetscCall(DMGetGlobalSection(dm, &globalSection));
630507218a29SMatthew G. Knepley   PetscCall(DMGetCellDS(dm, cells ? cells[cStart] : cStart, &prob, NULL));
63069566063dSJacob Faibussowitsch   PetscCall(PetscDSGetNumFields(prob, &Nf));
63079566063dSJacob Faibussowitsch   PetscCall(PetscDSGetTotalDimension(prob, &totDim));
63089566063dSJacob Faibussowitsch   PetscCall(PetscDSHasDynamicJacobian(prob, &hasDyn));
63098e3a2eefSMatthew G. Knepley   hasDyn = hasDyn && (X_tShift != 0.0) ? PETSC_TRUE : PETSC_FALSE;
63109566063dSJacob Faibussowitsch   PetscCall(DMGetAuxiliaryVec(dm, key.label, key.value, key.part, &A));
63118e3a2eefSMatthew G. Knepley   if (A) {
63129566063dSJacob Faibussowitsch     PetscCall(VecGetDM(A, &dmAux));
63139566063dSJacob Faibussowitsch     PetscCall(DMGetEnclosureRelation(dmAux, dm, &encAux));
63149566063dSJacob Faibussowitsch     PetscCall(DMConvert(dmAux, DMPLEX, &plexAux));
63159566063dSJacob Faibussowitsch     PetscCall(DMGetLocalSection(plexAux, &sectionAux));
63169566063dSJacob Faibussowitsch     PetscCall(DMGetDS(dmAux, &probAux));
63179566063dSJacob Faibussowitsch     PetscCall(PetscDSGetTotalDimension(probAux, &totDimAux));
63188e3a2eefSMatthew G. Knepley   }
63199566063dSJacob Faibussowitsch   PetscCall(VecSet(Z, 0.0));
63209566063dSJacob Faibussowitsch   PetscCall(PetscMalloc6(numCells * totDim, &u, X_t ? numCells * totDim : 0, &u_t, numCells * totDim * totDim, &elemMat, hasDyn ? numCells * totDim * totDim : 0, &elemMatD, numCells * totDim, &y, totDim, &z));
63219566063dSJacob Faibussowitsch   if (dmAux) PetscCall(PetscMalloc1(numCells * totDimAux, &a));
63229566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateField(dm, &coordField));
63238e3a2eefSMatthew G. Knepley   for (c = cStart; c < cEnd; ++c) {
63248e3a2eefSMatthew G. Knepley     const PetscInt cell = cells ? cells[c] : c;
63258e3a2eefSMatthew G. Knepley     const PetscInt cind = c - cStart;
63268e3a2eefSMatthew G. Knepley     PetscScalar   *x = NULL, *x_t = NULL;
63278e3a2eefSMatthew G. Knepley     PetscInt       i;
63288e3a2eefSMatthew G. Knepley 
63299566063dSJacob Faibussowitsch     PetscCall(DMPlexVecGetClosure(plex, section, X, cell, NULL, &x));
63308e3a2eefSMatthew G. Knepley     for (i = 0; i < totDim; ++i) u[cind * totDim + i] = x[i];
63319566063dSJacob Faibussowitsch     PetscCall(DMPlexVecRestoreClosure(plex, section, X, cell, NULL, &x));
63328e3a2eefSMatthew G. Knepley     if (X_t) {
63339566063dSJacob Faibussowitsch       PetscCall(DMPlexVecGetClosure(plex, section, X_t, cell, NULL, &x_t));
63348e3a2eefSMatthew G. Knepley       for (i = 0; i < totDim; ++i) u_t[cind * totDim + i] = x_t[i];
63359566063dSJacob Faibussowitsch       PetscCall(DMPlexVecRestoreClosure(plex, section, X_t, cell, NULL, &x_t));
63368e3a2eefSMatthew G. Knepley     }
63378e3a2eefSMatthew G. Knepley     if (dmAux) {
63388e3a2eefSMatthew G. Knepley       PetscInt subcell;
63399566063dSJacob Faibussowitsch       PetscCall(DMGetEnclosurePoint(dmAux, dm, encAux, cell, &subcell));
63409566063dSJacob Faibussowitsch       PetscCall(DMPlexVecGetClosure(plexAux, sectionAux, A, subcell, NULL, &x));
63418e3a2eefSMatthew G. Knepley       for (i = 0; i < totDimAux; ++i) a[cind * totDimAux + i] = x[i];
63429566063dSJacob Faibussowitsch       PetscCall(DMPlexVecRestoreClosure(plexAux, sectionAux, A, subcell, NULL, &x));
63438e3a2eefSMatthew G. Knepley     }
63449566063dSJacob Faibussowitsch     PetscCall(DMPlexVecGetClosure(plex, section, Y, cell, NULL, &x));
63458e3a2eefSMatthew G. Knepley     for (i = 0; i < totDim; ++i) y[cind * totDim + i] = x[i];
63469566063dSJacob Faibussowitsch     PetscCall(DMPlexVecRestoreClosure(plex, section, Y, cell, NULL, &x));
63478e3a2eefSMatthew G. Knepley   }
63489566063dSJacob Faibussowitsch   PetscCall(PetscArrayzero(elemMat, numCells * totDim * totDim));
63499566063dSJacob Faibussowitsch   if (hasDyn) PetscCall(PetscArrayzero(elemMatD, numCells * totDim * totDim));
63508e3a2eefSMatthew G. Knepley   for (fieldI = 0; fieldI < Nf; ++fieldI) {
63518e3a2eefSMatthew G. Knepley     PetscFE  fe;
63528e3a2eefSMatthew G. Knepley     PetscInt Nb;
63538e3a2eefSMatthew G. Knepley     /* Conforming batches */
63548e3a2eefSMatthew G. Knepley     PetscInt numChunks, numBatches, numBlocks, Ne, blockSize, batchSize;
63558e3a2eefSMatthew G. Knepley     /* Remainder */
63568e3a2eefSMatthew G. Knepley     PetscInt        Nr, offset, Nq;
63578e3a2eefSMatthew G. Knepley     PetscQuadrature qGeom = NULL;
63588e3a2eefSMatthew G. Knepley     PetscInt        maxDegree;
63598e3a2eefSMatthew G. Knepley     PetscFEGeom    *cgeomFEM, *chunkGeom = NULL, *remGeom = NULL;
63608e3a2eefSMatthew G. Knepley 
63619566063dSJacob Faibussowitsch     PetscCall(PetscDSGetDiscretization(prob, fieldI, (PetscObject *)&fe));
63629566063dSJacob Faibussowitsch     PetscCall(PetscFEGetQuadrature(fe, &quad));
63639566063dSJacob Faibussowitsch     PetscCall(PetscFEGetDimension(fe, &Nb));
63649566063dSJacob Faibussowitsch     PetscCall(PetscFEGetTileSizes(fe, NULL, &numBlocks, NULL, &numBatches));
63659566063dSJacob Faibussowitsch     PetscCall(DMFieldGetDegree(coordField, cellIS, NULL, &maxDegree));
63669566063dSJacob Faibussowitsch     if (maxDegree <= 1) PetscCall(DMFieldCreateDefaultQuadrature(coordField, cellIS, &qGeom));
63678e3a2eefSMatthew G. Knepley     if (!qGeom) {
63689566063dSJacob Faibussowitsch       PetscCall(PetscFEGetQuadrature(fe, &qGeom));
63699566063dSJacob Faibussowitsch       PetscCall(PetscObjectReference((PetscObject)qGeom));
63708e3a2eefSMatthew G. Knepley     }
63719566063dSJacob Faibussowitsch     PetscCall(PetscQuadratureGetData(qGeom, NULL, NULL, &Nq, NULL, NULL));
63729566063dSJacob Faibussowitsch     PetscCall(DMSNESGetFEGeom(coordField, cellIS, qGeom, PETSC_FALSE, &cgeomFEM));
63738e3a2eefSMatthew G. Knepley     blockSize = Nb;
63748e3a2eefSMatthew G. Knepley     batchSize = numBlocks * blockSize;
63759566063dSJacob Faibussowitsch     PetscCall(PetscFESetTileSizes(fe, blockSize, numBlocks, batchSize, numBatches));
63768e3a2eefSMatthew G. Knepley     numChunks = numCells / (numBatches * batchSize);
63778e3a2eefSMatthew G. Knepley     Ne        = numChunks * numBatches * batchSize;
63788e3a2eefSMatthew G. Knepley     Nr        = numCells % (numBatches * batchSize);
63798e3a2eefSMatthew G. Knepley     offset    = numCells - Nr;
63809566063dSJacob Faibussowitsch     PetscCall(PetscFEGeomGetChunk(cgeomFEM, 0, offset, &chunkGeom));
63819566063dSJacob Faibussowitsch     PetscCall(PetscFEGeomGetChunk(cgeomFEM, offset, numCells, &remGeom));
63828e3a2eefSMatthew G. Knepley     for (fieldJ = 0; fieldJ < Nf; ++fieldJ) {
63838e3a2eefSMatthew G. Knepley       key.field = fieldI * Nf + fieldJ;
63849566063dSJacob Faibussowitsch       PetscCall(PetscFEIntegrateJacobian(prob, PETSCFE_JACOBIAN, key, Ne, chunkGeom, u, u_t, probAux, a, t, X_tShift, elemMat));
63858e3a54c0SPierre Jolivet       PetscCall(PetscFEIntegrateJacobian(prob, PETSCFE_JACOBIAN, key, Nr, remGeom, &u[offset * totDim], PetscSafePointerPlusOffset(u_t, offset * totDim), probAux, PetscSafePointerPlusOffset(a, offset * totDimAux), t, X_tShift, &elemMat[offset * totDim * totDim]));
63868e3a2eefSMatthew G. Knepley       if (hasDyn) {
63879566063dSJacob Faibussowitsch         PetscCall(PetscFEIntegrateJacobian(prob, PETSCFE_JACOBIAN_DYN, key, Ne, chunkGeom, u, u_t, probAux, a, t, X_tShift, elemMatD));
63888e3a54c0SPierre Jolivet         PetscCall(PetscFEIntegrateJacobian(prob, PETSCFE_JACOBIAN_DYN, key, Nr, remGeom, &u[offset * totDim], PetscSafePointerPlusOffset(u_t, offset * totDim), probAux, &a[offset * totDimAux], t, X_tShift, &elemMatD[offset * totDim * totDim]));
63898e3a2eefSMatthew G. Knepley       }
63908e3a2eefSMatthew G. Knepley     }
63919566063dSJacob Faibussowitsch     PetscCall(PetscFEGeomRestoreChunk(cgeomFEM, offset, numCells, &remGeom));
63929566063dSJacob Faibussowitsch     PetscCall(PetscFEGeomRestoreChunk(cgeomFEM, 0, offset, &chunkGeom));
63939566063dSJacob Faibussowitsch     PetscCall(DMSNESRestoreFEGeom(coordField, cellIS, qGeom, PETSC_FALSE, &cgeomFEM));
63949566063dSJacob Faibussowitsch     PetscCall(PetscQuadratureDestroy(&qGeom));
63958e3a2eefSMatthew G. Knepley   }
63968e3a2eefSMatthew G. Knepley   if (hasDyn) {
63978e3a2eefSMatthew G. Knepley     for (c = 0; c < numCells * totDim * totDim; ++c) elemMat[c] += X_tShift * elemMatD[c];
63988e3a2eefSMatthew G. Knepley   }
63998e3a2eefSMatthew G. Knepley   for (c = cStart; c < cEnd; ++c) {
64008e3a2eefSMatthew G. Knepley     const PetscInt     cell = cells ? cells[c] : c;
64018e3a2eefSMatthew G. Knepley     const PetscInt     cind = c - cStart;
64028e3a2eefSMatthew G. Knepley     const PetscBLASInt M = totDim, one = 1;
64038e3a2eefSMatthew G. Knepley     const PetscScalar  a = 1.0, b = 0.0;
64048e3a2eefSMatthew G. Knepley 
6405792fecdfSBarry Smith     PetscCallBLAS("BLASgemv", BLASgemv_("N", &M, &M, &a, &elemMat[cind * totDim * totDim], &M, &y[cind * totDim], &one, &b, z, &one));
64068e3a2eefSMatthew G. Knepley     if (mesh->printFEM > 1) {
64079566063dSJacob Faibussowitsch       PetscCall(DMPrintCellMatrix(c, name, totDim, totDim, &elemMat[cind * totDim * totDim]));
64089566063dSJacob Faibussowitsch       PetscCall(DMPrintCellVector(c, "Y", totDim, &y[cind * totDim]));
64099566063dSJacob Faibussowitsch       PetscCall(DMPrintCellVector(c, "Z", totDim, z));
64108e3a2eefSMatthew G. Knepley     }
64119566063dSJacob Faibussowitsch     PetscCall(DMPlexVecSetClosure(dm, section, Z, cell, z, ADD_VALUES));
64128e3a2eefSMatthew G. Knepley   }
64139566063dSJacob Faibussowitsch   PetscCall(PetscFree6(u, u_t, elemMat, elemMatD, y, z));
64148e3a2eefSMatthew G. Knepley   if (mesh->printFEM) {
64159566063dSJacob Faibussowitsch     PetscCall(PetscPrintf(PetscObjectComm((PetscObject)Z), "Z:\n"));
64169566063dSJacob Faibussowitsch     PetscCall(VecView(Z, NULL));
64178e3a2eefSMatthew G. Knepley   }
64181059d808SMatthew G. Knepley   PetscCall(ISRestorePointRange(cellIS, &cStart, &cEnd, &cells));
64199566063dSJacob Faibussowitsch   PetscCall(PetscFree(a));
64209566063dSJacob Faibussowitsch   PetscCall(DMDestroy(&plexAux));
64219566063dSJacob Faibussowitsch   PetscCall(DMDestroy(&plex));
64229566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(DMPLEX_JacobianFEM, dm, 0, 0, 0));
64233ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
64248e3a2eefSMatthew G. Knepley }
6425