xref: /petsc/src/dm/impls/plex/plexfem.c (revision 3e2b02182cf4a6497431436fb2ff4bf68e1bf652)
1af0996ceSBarry Smith #include <petsc/private/dmpleximpl.h> /*I      "petscdmplex.h"   I*/
2da97024aSMatthew G. Knepley #include <petscsf.h>
3cb1e1211SMatthew G Knepley 
48e3a2eefSMatthew G. Knepley #include <petscblaslapack.h>
5e8f14785SLisandro Dalcin #include <petsc/private/hashsetij.h>
6af0996ceSBarry Smith #include <petsc/private/petscfeimpl.h>
7af0996ceSBarry Smith #include <petsc/private/petscfvimpl.h>
8a0845e3aSMatthew G. Knepley 
95f0b18bfSMatthew G. Knepley PetscBool  Clementcite       = PETSC_FALSE;
105f0b18bfSMatthew G. Knepley const char ClementCitation[] = "@article{clement1975approximation,\n"
115f0b18bfSMatthew G. Knepley                                "  title   = {Approximation by finite element functions using local regularization},\n"
125f0b18bfSMatthew G. Knepley                                "  author  = {Philippe Cl{\\'e}ment},\n"
135f0b18bfSMatthew G. Knepley                                "  journal = {Revue fran{\\c{c}}aise d'automatique, informatique, recherche op{\\'e}rationnelle. Analyse num{\\'e}rique},\n"
145f0b18bfSMatthew G. Knepley                                "  volume  = {9},\n"
155f0b18bfSMatthew G. Knepley                                "  number  = {R2},\n"
165f0b18bfSMatthew G. Knepley                                "  pages   = {77--84},\n"
175f0b18bfSMatthew G. Knepley                                "  year    = {1975}\n}\n";
185f0b18bfSMatthew G. Knepley 
19d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexConvertPlex(DM dm, DM *plex, PetscBool copy)
20d71ae5a4SJacob Faibussowitsch {
212f856554SMatthew G. Knepley   PetscBool isPlex;
222f856554SMatthew G. Knepley 
232f856554SMatthew G. Knepley   PetscFunctionBegin;
249566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)dm, DMPLEX, &isPlex));
252f856554SMatthew G. Knepley   if (isPlex) {
262f856554SMatthew G. Knepley     *plex = dm;
279566063dSJacob Faibussowitsch     PetscCall(PetscObjectReference((PetscObject)dm));
282f856554SMatthew G. Knepley   } else {
299566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)dm, "dm_plex", (PetscObject *)plex));
302f856554SMatthew G. Knepley     if (!*plex) {
319566063dSJacob Faibussowitsch       PetscCall(DMConvert(dm, DMPLEX, plex));
329566063dSJacob Faibussowitsch       PetscCall(PetscObjectCompose((PetscObject)dm, "dm_plex", (PetscObject)*plex));
332f856554SMatthew G. Knepley       if (copy) {
342f856554SMatthew G. Knepley         DMSubDomainHookLink link;
359a2a23afSMatthew G. Knepley 
369566063dSJacob Faibussowitsch         PetscCall(DMCopyAuxiliaryVec(dm, *plex));
379a2a23afSMatthew G. Knepley         /* Run the subdomain hook (this will copy the DMSNES/DMTS) */
382f856554SMatthew G. Knepley         for (link = dm->subdomainhook; link; link = link->next) {
399566063dSJacob Faibussowitsch           if (link->ddhook) PetscCall((*link->ddhook)(dm, *plex, link->ctx));
402f856554SMatthew G. Knepley         }
412f856554SMatthew G. Knepley       }
422f856554SMatthew G. Knepley     } else {
439566063dSJacob Faibussowitsch       PetscCall(PetscObjectReference((PetscObject)*plex));
442f856554SMatthew G. Knepley     }
452f856554SMatthew G. Knepley   }
463ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
472f856554SMatthew G. Knepley }
482f856554SMatthew G. Knepley 
49d71ae5a4SJacob Faibussowitsch static PetscErrorCode PetscContainerUserDestroy_PetscFEGeom(void *ctx)
50d71ae5a4SJacob Faibussowitsch {
519b6f715bSMatthew G. Knepley   PetscFEGeom *geom = (PetscFEGeom *)ctx;
529b6f715bSMatthew G. Knepley 
539b6f715bSMatthew G. Knepley   PetscFunctionBegin;
549566063dSJacob Faibussowitsch   PetscCall(PetscFEGeomDestroy(&geom));
553ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
569b6f715bSMatthew G. Knepley }
579b6f715bSMatthew G. Knepley 
58d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexGetFEGeom(DMField coordField, IS pointIS, PetscQuadrature quad, PetscBool faceData, PetscFEGeom **geom)
59d71ae5a4SJacob Faibussowitsch {
609b6f715bSMatthew G. Knepley   char           composeStr[33] = {0};
619b6f715bSMatthew G. Knepley   PetscObjectId  id;
629b6f715bSMatthew G. Knepley   PetscContainer container;
639b6f715bSMatthew G. Knepley 
649b6f715bSMatthew G. Knepley   PetscFunctionBegin;
659566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetId((PetscObject)quad, &id));
6663a3b9bcSJacob Faibussowitsch   PetscCall(PetscSNPrintf(composeStr, 32, "DMPlexGetFEGeom_%" PetscInt64_FMT "\n", id));
679566063dSJacob Faibussowitsch   PetscCall(PetscObjectQuery((PetscObject)pointIS, composeStr, (PetscObject *)&container));
689b6f715bSMatthew G. Knepley   if (container) {
699566063dSJacob Faibussowitsch     PetscCall(PetscContainerGetPointer(container, (void **)geom));
709b6f715bSMatthew G. Knepley   } else {
719566063dSJacob Faibussowitsch     PetscCall(DMFieldCreateFEGeom(coordField, pointIS, quad, faceData, geom));
729566063dSJacob Faibussowitsch     PetscCall(PetscContainerCreate(PETSC_COMM_SELF, &container));
739566063dSJacob Faibussowitsch     PetscCall(PetscContainerSetPointer(container, (void *)*geom));
749566063dSJacob Faibussowitsch     PetscCall(PetscContainerSetUserDestroy(container, PetscContainerUserDestroy_PetscFEGeom));
759566063dSJacob Faibussowitsch     PetscCall(PetscObjectCompose((PetscObject)pointIS, composeStr, (PetscObject)container));
769566063dSJacob Faibussowitsch     PetscCall(PetscContainerDestroy(&container));
779b6f715bSMatthew G. Knepley   }
783ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
799b6f715bSMatthew G. Knepley }
809b6f715bSMatthew G. Knepley 
81d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexRestoreFEGeom(DMField coordField, IS pointIS, PetscQuadrature quad, PetscBool faceData, PetscFEGeom **geom)
82d71ae5a4SJacob Faibussowitsch {
839b6f715bSMatthew G. Knepley   PetscFunctionBegin;
849b6f715bSMatthew G. Knepley   *geom = NULL;
853ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
869b6f715bSMatthew G. Knepley }
879b6f715bSMatthew G. Knepley 
8846fa42a0SMatthew G. Knepley /*@
8946fa42a0SMatthew G. Knepley   DMPlexGetScale - Get the scale for the specified fundamental unit
9046fa42a0SMatthew G. Knepley 
9120f4b53cSBarry Smith   Not Collective
9246fa42a0SMatthew G. Knepley 
934165533cSJose E. Roman   Input Parameters:
94a1cb98faSBarry Smith + dm   - the `DM`
9546fa42a0SMatthew G. Knepley - unit - The SI unit
9646fa42a0SMatthew G. Knepley 
974165533cSJose E. Roman   Output Parameter:
9846fa42a0SMatthew G. Knepley . scale - The value used to scale all quantities with this unit
9946fa42a0SMatthew G. Knepley 
10046fa42a0SMatthew G. Knepley   Level: advanced
10146fa42a0SMatthew G. Knepley 
102a1cb98faSBarry Smith .seealso: [](chapter_unstructured), `DM`, `DMPLEX`, `DMPlexSetScale()`, `PetscUnit`
10346fa42a0SMatthew G. Knepley @*/
104d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexGetScale(DM dm, PetscUnit unit, PetscReal *scale)
105d71ae5a4SJacob Faibussowitsch {
106cb1e1211SMatthew G Knepley   DM_Plex *mesh = (DM_Plex *)dm->data;
107cb1e1211SMatthew G Knepley 
108cb1e1211SMatthew G Knepley   PetscFunctionBegin;
109cb1e1211SMatthew G Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
110dadcf809SJacob Faibussowitsch   PetscValidRealPointer(scale, 3);
111cb1e1211SMatthew G Knepley   *scale = mesh->scale[unit];
1123ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
113cb1e1211SMatthew G Knepley }
114cb1e1211SMatthew G Knepley 
11546fa42a0SMatthew G. Knepley /*@
11646fa42a0SMatthew G. Knepley   DMPlexSetScale - Set the scale for the specified fundamental unit
11746fa42a0SMatthew G. Knepley 
11820f4b53cSBarry Smith   Not Collective
11946fa42a0SMatthew G. Knepley 
1204165533cSJose E. Roman   Input Parameters:
121a1cb98faSBarry Smith + dm   - the `DM`
12246fa42a0SMatthew G. Knepley . unit - The SI unit
12346fa42a0SMatthew G. Knepley - scale - The value used to scale all quantities with this unit
12446fa42a0SMatthew G. Knepley 
12546fa42a0SMatthew G. Knepley   Level: advanced
12646fa42a0SMatthew G. Knepley 
127a1cb98faSBarry Smith .seealso: [](chapter_unstructured), `DM`, `DMPLEX`, `DMPlexGetScale()`, `PetscUnit`
12846fa42a0SMatthew G. Knepley @*/
129d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexSetScale(DM dm, PetscUnit unit, PetscReal scale)
130d71ae5a4SJacob Faibussowitsch {
131cb1e1211SMatthew G Knepley   DM_Plex *mesh = (DM_Plex *)dm->data;
132cb1e1211SMatthew G Knepley 
133cb1e1211SMatthew G Knepley   PetscFunctionBegin;
134cb1e1211SMatthew G Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
135cb1e1211SMatthew G Knepley   mesh->scale[unit] = scale;
1363ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
137cb1e1211SMatthew G Knepley }
138cb1e1211SMatthew G Knepley 
139d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexProjectRigidBody_Private(PetscInt dim, PetscReal t, const PetscReal X[], PetscInt Nc, PetscScalar *mode, void *ctx)
140d71ae5a4SJacob Faibussowitsch {
1419371c9d4SSatish Balay   const PetscInt eps[3][3][3] = {
1429371c9d4SSatish Balay     {{0, 0, 0},  {0, 0, 1},  {0, -1, 0}},
1439371c9d4SSatish Balay     {{0, 0, -1}, {0, 0, 0},  {1, 0, 0} },
1449371c9d4SSatish Balay     {{0, 1, 0},  {-1, 0, 0}, {0, 0, 0} }
1459371c9d4SSatish Balay   };
146026175e5SToby Isaac   PetscInt *ctxInt = (PetscInt *)ctx;
147ad917190SMatthew G. Knepley   PetscInt  dim2   = ctxInt[0];
148026175e5SToby Isaac   PetscInt  d      = ctxInt[1];
149026175e5SToby Isaac   PetscInt  i, j, k = dim > 2 ? d - dim : d;
150026175e5SToby Isaac 
151ad917190SMatthew G. Knepley   PetscFunctionBegin;
15263a3b9bcSJacob Faibussowitsch   PetscCheck(dim == dim2, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Input dimension %" PetscInt_FMT " does not match context dimension %" PetscInt_FMT, dim, dim2);
153026175e5SToby Isaac   for (i = 0; i < dim; i++) mode[i] = 0.;
154026175e5SToby Isaac   if (d < dim) {
15512adca46SMatthew G. Knepley     mode[d] = 1.; /* Translation along axis d */
156ad917190SMatthew G. Knepley   } else {
157026175e5SToby Isaac     for (i = 0; i < dim; i++) {
1589371c9d4SSatish Balay       for (j = 0; j < dim; j++) { mode[j] += eps[i][j][k] * X[i]; /* Rotation about axis d */ }
159026175e5SToby Isaac     }
160026175e5SToby Isaac   }
1613ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
162026175e5SToby Isaac }
163026175e5SToby Isaac 
164cc4e42d9SMartin Diehl /*@
16512adca46SMatthew G. Knepley   DMPlexCreateRigidBody - For the default global section, create rigid body modes by function space interpolation
166cb1e1211SMatthew G Knepley 
16720f4b53cSBarry Smith   Collective
168cb1e1211SMatthew G Knepley 
1694165533cSJose E. Roman   Input Parameters:
170a1cb98faSBarry Smith + dm - the `DM`
17156cf3b9cSMatthew G. Knepley - field - The field number for the rigid body space, or 0 for the default
172cb1e1211SMatthew G Knepley 
1734165533cSJose E. Roman   Output Parameter:
174cb1e1211SMatthew G Knepley . sp - the null space
175cb1e1211SMatthew G Knepley 
176cb1e1211SMatthew G Knepley   Level: advanced
177cb1e1211SMatthew G Knepley 
178a1cb98faSBarry Smith   Note:
179a1cb98faSBarry Smith   This is necessary to provide a suitable coarse space for algebraic multigrid
180a1cb98faSBarry Smith 
181a1cb98faSBarry Smith .seealso: [](chapter_unstructured), `DM`, `DMPLEX`, `MatNullSpaceCreate()`, `PCGAMG`
182cb1e1211SMatthew G Knepley @*/
183d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexCreateRigidBody(DM dm, PetscInt field, MatNullSpace *sp)
184d71ae5a4SJacob Faibussowitsch {
18556cf3b9cSMatthew G. Knepley   PetscErrorCode (**func)(PetscInt, PetscReal, const PetscReal *, PetscInt, PetscScalar *, void *);
186cb1e1211SMatthew G Knepley   MPI_Comm     comm;
187026175e5SToby Isaac   Vec          mode[6];
188026175e5SToby Isaac   PetscSection section, globalSection;
18956cf3b9cSMatthew G. Knepley   PetscInt     dim, dimEmbed, Nf, n, m, mmin, d, i, j;
190db14aad5SMatthew G. Knepley   void       **ctxs;
191cb1e1211SMatthew G Knepley 
192cb1e1211SMatthew G Knepley   PetscFunctionBegin;
1939566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)dm, &comm));
1949566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dm, &dim));
1959566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateDim(dm, &dimEmbed));
1969566063dSJacob Faibussowitsch   PetscCall(DMGetNumFields(dm, &Nf));
19763a3b9bcSJacob Faibussowitsch   PetscCheck(!Nf || !(field < 0 || field >= Nf), comm, PETSC_ERR_ARG_OUTOFRANGE, "Field %" PetscInt_FMT " is not in [0, %" PetscInt_FMT ")", field, Nf);
19856cf3b9cSMatthew G. Knepley   if (dim == 1 && Nf < 2) {
1999566063dSJacob Faibussowitsch     PetscCall(MatNullSpaceCreate(comm, PETSC_TRUE, 0, NULL, sp));
2003ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
201cb1e1211SMatthew G Knepley   }
2029566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dm, &section));
2039566063dSJacob Faibussowitsch   PetscCall(DMGetGlobalSection(dm, &globalSection));
2049566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetConstrainedStorageSize(globalSection, &n));
205db14aad5SMatthew G. Knepley   PetscCall(PetscCalloc2(Nf, &func, Nf, &ctxs));
206b247467aSMatthew G. Knepley   m = (dim * (dim + 1)) / 2;
2079566063dSJacob Faibussowitsch   PetscCall(VecCreate(comm, &mode[0]));
2089566063dSJacob Faibussowitsch   PetscCall(VecSetType(mode[0], dm->vectype));
2099566063dSJacob Faibussowitsch   PetscCall(VecSetSizes(mode[0], n, PETSC_DETERMINE));
2109566063dSJacob Faibussowitsch   PetscCall(VecSetUp(mode[0]));
2119566063dSJacob Faibussowitsch   PetscCall(VecGetSize(mode[0], &n));
212b247467aSMatthew G. Knepley   mmin        = PetscMin(m, n);
21356cf3b9cSMatthew G. Knepley   func[field] = DMPlexProjectRigidBody_Private;
2149566063dSJacob Faibussowitsch   for (i = 1; i < m; ++i) PetscCall(VecDuplicate(mode[0], &mode[i]));
215026175e5SToby Isaac   for (d = 0; d < m; d++) {
216330485fdSToby Isaac     PetscInt ctx[2];
217cb1e1211SMatthew G Knepley 
218db14aad5SMatthew G. Knepley     ctxs[field] = (void *)(&ctx[0]);
2199d8fbdeaSMatthew G. Knepley     ctx[0]      = dimEmbed;
220330485fdSToby Isaac     ctx[1]      = d;
221db14aad5SMatthew G. Knepley     PetscCall(DMProjectFunction(dm, 0.0, func, ctxs, INSERT_VALUES, mode[d]));
222cb1e1211SMatthew G Knepley   }
2233b2202bfSJacob Faibussowitsch   /* Orthonormalize system */
224b50a2c0aSJacob Faibussowitsch   for (i = 0; i < mmin; ++i) {
225b77f2eeeSJacob Faibussowitsch     PetscScalar dots[6];
226b50a2c0aSJacob Faibussowitsch 
2279566063dSJacob Faibussowitsch     PetscCall(VecNormalize(mode[i], NULL));
2289566063dSJacob Faibussowitsch     PetscCall(VecMDot(mode[i], mmin - i - 1, mode + i + 1, dots + i + 1));
229b50a2c0aSJacob Faibussowitsch     for (j = i + 1; j < mmin; ++j) {
230b77f2eeeSJacob Faibussowitsch       dots[j] *= -1.0;
2319566063dSJacob Faibussowitsch       PetscCall(VecAXPY(mode[j], dots[j], mode[i]));
232b50a2c0aSJacob Faibussowitsch     }
233cb1e1211SMatthew G Knepley   }
2349566063dSJacob Faibussowitsch   PetscCall(MatNullSpaceCreate(comm, PETSC_FALSE, mmin, mode, sp));
2359566063dSJacob Faibussowitsch   for (i = 0; i < m; ++i) PetscCall(VecDestroy(&mode[i]));
236db14aad5SMatthew G. Knepley   PetscCall(PetscFree2(func, ctxs));
2373ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
238cb1e1211SMatthew G Knepley }
239cb1e1211SMatthew G Knepley 
240cc4e42d9SMartin Diehl /*@
24112adca46SMatthew G. Knepley   DMPlexCreateRigidBodies - For the default global section, create rigid body modes by function space interpolation
24212adca46SMatthew G. Knepley 
24320f4b53cSBarry Smith   Collective
24412adca46SMatthew G. Knepley 
2454165533cSJose E. Roman   Input Parameters:
246a1cb98faSBarry Smith + dm    - the `DM`
24712adca46SMatthew G. Knepley . nb    - The number of bodies
248a1cb98faSBarry Smith . label - The `DMLabel` marking each domain
24912adca46SMatthew G. Knepley . nids  - The number of ids per body
25012adca46SMatthew G. Knepley - ids   - An array of the label ids in sequence for each domain
25112adca46SMatthew G. Knepley 
2524165533cSJose E. Roman   Output Parameter:
25312adca46SMatthew G. Knepley . sp - the null space
25412adca46SMatthew G. Knepley 
25512adca46SMatthew G. Knepley   Level: advanced
25612adca46SMatthew G. Knepley 
257a1cb98faSBarry Smith   Note:
258a1cb98faSBarry Smith   This is necessary to provide a suitable coarse space for algebraic multigrid
259a1cb98faSBarry Smith 
260a1cb98faSBarry Smith .seealso: [](chapter_unstructured), `DM`, `DMPLEX`, `MatNullSpaceCreate()`
26112adca46SMatthew G. Knepley @*/
262d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexCreateRigidBodies(DM dm, PetscInt nb, DMLabel label, const PetscInt nids[], const PetscInt ids[], MatNullSpace *sp)
263d71ae5a4SJacob Faibussowitsch {
26412adca46SMatthew G. Knepley   MPI_Comm     comm;
26512adca46SMatthew G. Knepley   PetscSection section, globalSection;
26612adca46SMatthew G. Knepley   Vec         *mode;
26712adca46SMatthew G. Knepley   PetscScalar *dots;
26812adca46SMatthew G. Knepley   PetscInt     dim, dimEmbed, n, m, b, d, i, j, off;
26912adca46SMatthew G. Knepley 
27012adca46SMatthew G. Knepley   PetscFunctionBegin;
2719566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)dm, &comm));
2729566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dm, &dim));
2739566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateDim(dm, &dimEmbed));
2749566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dm, &section));
2759566063dSJacob Faibussowitsch   PetscCall(DMGetGlobalSection(dm, &globalSection));
2769566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetConstrainedStorageSize(globalSection, &n));
27712adca46SMatthew G. Knepley   m = nb * (dim * (dim + 1)) / 2;
2789566063dSJacob Faibussowitsch   PetscCall(PetscMalloc2(m, &mode, m, &dots));
2799566063dSJacob Faibussowitsch   PetscCall(VecCreate(comm, &mode[0]));
2809566063dSJacob Faibussowitsch   PetscCall(VecSetSizes(mode[0], n, PETSC_DETERMINE));
2819566063dSJacob Faibussowitsch   PetscCall(VecSetUp(mode[0]));
2829566063dSJacob Faibussowitsch   for (i = 1; i < m; ++i) PetscCall(VecDuplicate(mode[0], &mode[i]));
28312adca46SMatthew G. Knepley   for (b = 0, off = 0; b < nb; ++b) {
28412adca46SMatthew G. Knepley     for (d = 0; d < m / nb; ++d) {
28512adca46SMatthew G. Knepley       PetscInt ctx[2];
28612adca46SMatthew G. Knepley       PetscErrorCode (*func)(PetscInt, PetscReal, const PetscReal *, PetscInt, PetscScalar *, void *) = DMPlexProjectRigidBody_Private;
28712adca46SMatthew G. Knepley       void *voidctx                                                                                   = (void *)(&ctx[0]);
28812adca46SMatthew G. Knepley 
28912adca46SMatthew G. Knepley       ctx[0] = dimEmbed;
29012adca46SMatthew G. Knepley       ctx[1] = d;
2919566063dSJacob Faibussowitsch       PetscCall(DMProjectFunctionLabel(dm, 0.0, label, nids[b], &ids[off], 0, NULL, &func, &voidctx, INSERT_VALUES, mode[d]));
29212adca46SMatthew G. Knepley       off += nids[b];
29312adca46SMatthew G. Knepley     }
29412adca46SMatthew G. Knepley   }
2953b2202bfSJacob Faibussowitsch   /* Orthonormalize system */
296606c1a1cSJacob Faibussowitsch   for (i = 0; i < m; ++i) {
297b77f2eeeSJacob Faibussowitsch     PetscScalar dots[6];
2985a0e29b9SJacob Faibussowitsch 
2999566063dSJacob Faibussowitsch     PetscCall(VecNormalize(mode[i], NULL));
3009566063dSJacob Faibussowitsch     PetscCall(VecMDot(mode[i], m - i - 1, mode + i + 1, dots + i + 1));
3015a0e29b9SJacob Faibussowitsch     for (j = i + 1; j < m; ++j) {
302b77f2eeeSJacob Faibussowitsch       dots[j] *= -1.0;
3039566063dSJacob Faibussowitsch       PetscCall(VecAXPY(mode[j], dots[j], mode[i]));
3045a0e29b9SJacob Faibussowitsch     }
30512adca46SMatthew G. Knepley   }
3069566063dSJacob Faibussowitsch   PetscCall(MatNullSpaceCreate(comm, PETSC_FALSE, m, mode, sp));
3079566063dSJacob Faibussowitsch   for (i = 0; i < m; ++i) PetscCall(VecDestroy(&mode[i]));
3089566063dSJacob Faibussowitsch   PetscCall(PetscFree2(mode, dots));
3093ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
31012adca46SMatthew G. Knepley }
31112adca46SMatthew G. Knepley 
312b29cfa1cSToby Isaac /*@
313b29cfa1cSToby Isaac   DMPlexSetMaxProjectionHeight - In DMPlexProjectXXXLocal() functions, the projected values of a basis function's dofs
314b29cfa1cSToby Isaac   are computed by associating the basis function with one of the mesh points in its transitively-closed support, and
315b29cfa1cSToby Isaac   evaluating the dual space basis of that point.  A basis function is associated with the point in its
316b29cfa1cSToby Isaac   transitively-closed support whose mesh height is highest (w.r.t. DAG height), but not greater than the maximum
317b29cfa1cSToby Isaac   projection height, which is set with this function.  By default, the maximum projection height is zero, which means
318b29cfa1cSToby Isaac   that only mesh cells are used to project basis functions.  A height of one, for example, evaluates a cell-interior
319b29cfa1cSToby Isaac   basis functions using its cells dual space basis, but all other basis functions with the dual space basis of a face.
320b29cfa1cSToby Isaac 
321b29cfa1cSToby Isaac   Input Parameters:
322a1cb98faSBarry Smith + dm - the `DMPLEX` object
323b29cfa1cSToby Isaac - height - the maximum projection height >= 0
324b29cfa1cSToby Isaac 
325b29cfa1cSToby Isaac   Level: advanced
326b29cfa1cSToby Isaac 
327a1cb98faSBarry Smith .seealso: [](chapter_unstructured), `DM`, `DMPLEX`, `DMPlexGetMaxProjectionHeight()`, `DMProjectFunctionLocal()`, `DMProjectFunctionLabelLocal()`
328b29cfa1cSToby Isaac @*/
329d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexSetMaxProjectionHeight(DM dm, PetscInt height)
330d71ae5a4SJacob Faibussowitsch {
331b29cfa1cSToby Isaac   DM_Plex *plex = (DM_Plex *)dm->data;
332b29cfa1cSToby Isaac 
333b29cfa1cSToby Isaac   PetscFunctionBegin;
334b29cfa1cSToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
335b29cfa1cSToby Isaac   plex->maxProjectionHeight = height;
3363ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
337b29cfa1cSToby Isaac }
338b29cfa1cSToby Isaac 
339b29cfa1cSToby Isaac /*@
340b29cfa1cSToby Isaac   DMPlexGetMaxProjectionHeight - Get the maximum height (w.r.t. DAG) of mesh points used to evaluate dual bases in
341b29cfa1cSToby Isaac   DMPlexProjectXXXLocal() functions.
342b29cfa1cSToby Isaac 
3432fe279fdSBarry Smith   Input Parameter:
344a1cb98faSBarry Smith . dm - the `DMPLEX` object
345b29cfa1cSToby Isaac 
3462fe279fdSBarry Smith   Output Parameter:
347b29cfa1cSToby Isaac . height - the maximum projection height
348b29cfa1cSToby Isaac 
349b29cfa1cSToby Isaac   Level: intermediate
350b29cfa1cSToby Isaac 
351a1cb98faSBarry Smith .seealso: [](chapter_unstructured), `DM`, `DMPLEX`, `DMPlexSetMaxProjectionHeight()`, `DMProjectFunctionLocal()`, `DMProjectFunctionLabelLocal()`
352b29cfa1cSToby Isaac @*/
353d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexGetMaxProjectionHeight(DM dm, PetscInt *height)
354d71ae5a4SJacob Faibussowitsch {
355b29cfa1cSToby Isaac   DM_Plex *plex = (DM_Plex *)dm->data;
356b29cfa1cSToby Isaac 
357b29cfa1cSToby Isaac   PetscFunctionBegin;
358b29cfa1cSToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
359b29cfa1cSToby Isaac   *height = plex->maxProjectionHeight;
3603ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
361b29cfa1cSToby Isaac }
362b29cfa1cSToby Isaac 
363ca3d3a14SMatthew G. Knepley typedef struct {
364ca3d3a14SMatthew G. Knepley   PetscReal    alpha; /* The first Euler angle, and in 2D the only one */
365ca3d3a14SMatthew G. Knepley   PetscReal    beta;  /* The second Euler angle */
366ca3d3a14SMatthew G. Knepley   PetscReal    gamma; /* The third Euler angle */
367ca3d3a14SMatthew G. Knepley   PetscInt     dim;   /* The dimension of R */
368ca3d3a14SMatthew G. Knepley   PetscScalar *R;     /* The rotation matrix, transforming a vector in the local basis to the global basis */
369ca3d3a14SMatthew G. Knepley   PetscScalar *RT;    /* The transposed rotation matrix, transforming a vector in the global basis to the local basis */
370ca3d3a14SMatthew G. Knepley } RotCtx;
371ca3d3a14SMatthew G. Knepley 
372ca3d3a14SMatthew G. Knepley /*
373ca3d3a14SMatthew G. Knepley   Note: Following https://en.wikipedia.org/wiki/Euler_angles, we will specify Euler angles by extrinsic rotations, meaning that
374ca3d3a14SMatthew G. Knepley   we rotate with respect to a fixed initial coordinate system, the local basis (x-y-z). The global basis (X-Y-Z) is reached as follows:
375ca3d3a14SMatthew G. Knepley   $ The XYZ system rotates about the z axis by alpha. The X axis is now at angle alpha with respect to the x axis.
376ca3d3a14SMatthew G. Knepley   $ The XYZ system rotates again about the x axis by beta. The Z axis is now at angle beta with respect to the z axis.
377ca3d3a14SMatthew G. Knepley   $ The XYZ system rotates a third time about the z axis by gamma.
378ca3d3a14SMatthew G. Knepley */
379d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexBasisTransformSetUp_Rotation_Internal(DM dm, void *ctx)
380d71ae5a4SJacob Faibussowitsch {
381ca3d3a14SMatthew G. Knepley   RotCtx   *rc  = (RotCtx *)ctx;
382ca3d3a14SMatthew G. Knepley   PetscInt  dim = rc->dim;
383ca3d3a14SMatthew G. Knepley   PetscReal c1, s1, c2, s2, c3, s3;
384ca3d3a14SMatthew G. Knepley 
385ca3d3a14SMatthew G. Knepley   PetscFunctionBegin;
3869566063dSJacob Faibussowitsch   PetscCall(PetscMalloc2(PetscSqr(dim), &rc->R, PetscSqr(dim), &rc->RT));
387ca3d3a14SMatthew G. Knepley   switch (dim) {
388ca3d3a14SMatthew G. Knepley   case 2:
3899371c9d4SSatish Balay     c1       = PetscCosReal(rc->alpha);
3909371c9d4SSatish Balay     s1       = PetscSinReal(rc->alpha);
3919371c9d4SSatish Balay     rc->R[0] = c1;
3929371c9d4SSatish Balay     rc->R[1] = s1;
3939371c9d4SSatish Balay     rc->R[2] = -s1;
3949371c9d4SSatish Balay     rc->R[3] = c1;
3959566063dSJacob Faibussowitsch     PetscCall(PetscArraycpy(rc->RT, rc->R, PetscSqr(dim)));
396b458e8f1SJose E. Roman     DMPlex_Transpose2D_Internal(rc->RT);
397ca3d3a14SMatthew G. Knepley     break;
398ca3d3a14SMatthew G. Knepley   case 3:
3999371c9d4SSatish Balay     c1       = PetscCosReal(rc->alpha);
4009371c9d4SSatish Balay     s1       = PetscSinReal(rc->alpha);
4019371c9d4SSatish Balay     c2       = PetscCosReal(rc->beta);
4029371c9d4SSatish Balay     s2       = PetscSinReal(rc->beta);
4039371c9d4SSatish Balay     c3       = PetscCosReal(rc->gamma);
4049371c9d4SSatish Balay     s3       = PetscSinReal(rc->gamma);
4059371c9d4SSatish Balay     rc->R[0] = c1 * c3 - c2 * s1 * s3;
4069371c9d4SSatish Balay     rc->R[1] = c3 * s1 + c1 * c2 * s3;
4079371c9d4SSatish Balay     rc->R[2] = s2 * s3;
4089371c9d4SSatish Balay     rc->R[3] = -c1 * s3 - c2 * c3 * s1;
4099371c9d4SSatish Balay     rc->R[4] = c1 * c2 * c3 - s1 * s3;
4109371c9d4SSatish Balay     rc->R[5] = c3 * s2;
4119371c9d4SSatish Balay     rc->R[6] = s1 * s2;
4129371c9d4SSatish Balay     rc->R[7] = -c1 * s2;
4139371c9d4SSatish Balay     rc->R[8] = c2;
4149566063dSJacob Faibussowitsch     PetscCall(PetscArraycpy(rc->RT, rc->R, PetscSqr(dim)));
415b458e8f1SJose E. Roman     DMPlex_Transpose3D_Internal(rc->RT);
416ca3d3a14SMatthew G. Knepley     break;
417d71ae5a4SJacob Faibussowitsch   default:
418d71ae5a4SJacob Faibussowitsch     SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Dimension %" PetscInt_FMT " not supported", dim);
419ca3d3a14SMatthew G. Knepley   }
4203ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
421ca3d3a14SMatthew G. Knepley }
422ca3d3a14SMatthew G. Knepley 
423d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexBasisTransformDestroy_Rotation_Internal(DM dm, void *ctx)
424d71ae5a4SJacob Faibussowitsch {
425ca3d3a14SMatthew G. Knepley   RotCtx *rc = (RotCtx *)ctx;
426ca3d3a14SMatthew G. Knepley 
427ca3d3a14SMatthew G. Knepley   PetscFunctionBegin;
4289566063dSJacob Faibussowitsch   PetscCall(PetscFree2(rc->R, rc->RT));
4299566063dSJacob Faibussowitsch   PetscCall(PetscFree(rc));
4303ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
431ca3d3a14SMatthew G. Knepley }
432ca3d3a14SMatthew G. Knepley 
433d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexBasisTransformGetMatrix_Rotation_Internal(DM dm, const PetscReal x[], PetscBool l2g, const PetscScalar **A, void *ctx)
434d71ae5a4SJacob Faibussowitsch {
435ca3d3a14SMatthew G. Knepley   RotCtx *rc = (RotCtx *)ctx;
436ca3d3a14SMatthew G. Knepley 
437ca3d3a14SMatthew G. Knepley   PetscFunctionBeginHot;
438ca3d3a14SMatthew G. Knepley   PetscValidPointer(ctx, 5);
4399371c9d4SSatish Balay   if (l2g) {
4409371c9d4SSatish Balay     *A = rc->R;
4419371c9d4SSatish Balay   } else {
4429371c9d4SSatish Balay     *A = rc->RT;
4439371c9d4SSatish Balay   }
4443ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
445ca3d3a14SMatthew G. Knepley }
446ca3d3a14SMatthew G. Knepley 
447d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexBasisTransformApplyReal_Internal(DM dm, const PetscReal x[], PetscBool l2g, PetscInt dim, const PetscReal *y, PetscReal *z, void *ctx)
448d71ae5a4SJacob Faibussowitsch {
449ec277c0fSMatthew G. Knepley   PetscFunctionBegin;
450ab6a9622SMatthew G. Knepley #if defined(PETSC_USE_COMPLEX)
451ab6a9622SMatthew G. Knepley   switch (dim) {
4529371c9d4SSatish Balay   case 2: {
45327104ee2SJacob Faibussowitsch     PetscScalar yt[2] = {y[0], y[1]}, zt[2] = {0.0, 0.0};
454ab6a9622SMatthew G. Knepley 
4559566063dSJacob Faibussowitsch     PetscCall(DMPlexBasisTransformApply_Internal(dm, x, l2g, dim, yt, zt, ctx));
4569371c9d4SSatish Balay     z[0] = PetscRealPart(zt[0]);
4579371c9d4SSatish Balay     z[1] = PetscRealPart(zt[1]);
4589371c9d4SSatish Balay   } break;
4599371c9d4SSatish Balay   case 3: {
46027104ee2SJacob Faibussowitsch     PetscScalar yt[3] = {y[0], y[1], y[2]}, zt[3] = {0.0, 0.0, 0.0};
461ab6a9622SMatthew G. Knepley 
4629566063dSJacob Faibussowitsch     PetscCall(DMPlexBasisTransformApply_Internal(dm, x, l2g, dim, yt, zt, ctx));
4639371c9d4SSatish Balay     z[0] = PetscRealPart(zt[0]);
4649371c9d4SSatish Balay     z[1] = PetscRealPart(zt[1]);
4659371c9d4SSatish Balay     z[2] = PetscRealPart(zt[2]);
4669371c9d4SSatish Balay   } break;
467ab6a9622SMatthew G. Knepley   }
468ab6a9622SMatthew G. Knepley #else
4699566063dSJacob Faibussowitsch   PetscCall(DMPlexBasisTransformApply_Internal(dm, x, l2g, dim, y, z, ctx));
470ab6a9622SMatthew G. Knepley #endif
4713ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
472ab6a9622SMatthew G. Knepley }
473ab6a9622SMatthew G. Knepley 
474d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexBasisTransformApply_Internal(DM dm, const PetscReal x[], PetscBool l2g, PetscInt dim, const PetscScalar *y, PetscScalar *z, void *ctx)
475d71ae5a4SJacob Faibussowitsch {
476ca3d3a14SMatthew G. Knepley   const PetscScalar *A;
477ca3d3a14SMatthew G. Knepley 
478ca3d3a14SMatthew G. Knepley   PetscFunctionBeginHot;
4799566063dSJacob Faibussowitsch   PetscCall((*dm->transformGetMatrix)(dm, x, l2g, &A, ctx));
480ca3d3a14SMatthew G. Knepley   switch (dim) {
481d71ae5a4SJacob Faibussowitsch   case 2:
482d71ae5a4SJacob Faibussowitsch     DMPlex_Mult2D_Internal(A, 1, y, z);
483d71ae5a4SJacob Faibussowitsch     break;
484d71ae5a4SJacob Faibussowitsch   case 3:
485d71ae5a4SJacob Faibussowitsch     DMPlex_Mult3D_Internal(A, 1, y, z);
486d71ae5a4SJacob Faibussowitsch     break;
487ca3d3a14SMatthew G. Knepley   }
4883ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
489ca3d3a14SMatthew G. Knepley }
490ca3d3a14SMatthew G. Knepley 
491d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexBasisTransformField_Internal(DM dm, DM tdm, Vec tv, PetscInt p, PetscInt f, PetscBool l2g, PetscScalar *a)
492d71ae5a4SJacob Faibussowitsch {
493ca3d3a14SMatthew G. Knepley   PetscSection       ts;
494ca3d3a14SMatthew G. Knepley   const PetscScalar *ta, *tva;
495ca3d3a14SMatthew G. Knepley   PetscInt           dof;
496ca3d3a14SMatthew G. Knepley 
497ca3d3a14SMatthew G. Knepley   PetscFunctionBeginHot;
4989566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(tdm, &ts));
4999566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetFieldDof(ts, p, f, &dof));
5009566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(tv, &ta));
5019566063dSJacob Faibussowitsch   PetscCall(DMPlexPointLocalFieldRead(tdm, p, f, ta, &tva));
502ca3d3a14SMatthew G. Knepley   if (l2g) {
503ca3d3a14SMatthew G. Knepley     switch (dof) {
504d71ae5a4SJacob Faibussowitsch     case 4:
505d71ae5a4SJacob Faibussowitsch       DMPlex_Mult2D_Internal(tva, 1, a, a);
506d71ae5a4SJacob Faibussowitsch       break;
507d71ae5a4SJacob Faibussowitsch     case 9:
508d71ae5a4SJacob Faibussowitsch       DMPlex_Mult3D_Internal(tva, 1, a, a);
509d71ae5a4SJacob Faibussowitsch       break;
510ca3d3a14SMatthew G. Knepley     }
511ca3d3a14SMatthew G. Knepley   } else {
512ca3d3a14SMatthew G. Knepley     switch (dof) {
513d71ae5a4SJacob Faibussowitsch     case 4:
514d71ae5a4SJacob Faibussowitsch       DMPlex_MultTranspose2D_Internal(tva, 1, a, a);
515d71ae5a4SJacob Faibussowitsch       break;
516d71ae5a4SJacob Faibussowitsch     case 9:
517d71ae5a4SJacob Faibussowitsch       DMPlex_MultTranspose3D_Internal(tva, 1, a, a);
518d71ae5a4SJacob Faibussowitsch       break;
519ca3d3a14SMatthew G. Knepley     }
520ca3d3a14SMatthew G. Knepley   }
5219566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(tv, &ta));
5223ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
523ca3d3a14SMatthew G. Knepley }
524ca3d3a14SMatthew G. Knepley 
525d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexBasisTransformFieldTensor_Internal(DM dm, DM tdm, Vec tv, PetscInt pf, PetscInt f, PetscInt pg, PetscInt g, PetscBool l2g, PetscInt lda, PetscScalar *a)
526d71ae5a4SJacob Faibussowitsch {
527ca3d3a14SMatthew G. Knepley   PetscSection       s, ts;
528ca3d3a14SMatthew G. Knepley   const PetscScalar *ta, *tvaf, *tvag;
529ca3d3a14SMatthew G. Knepley   PetscInt           fdof, gdof, fpdof, gpdof;
530ca3d3a14SMatthew G. Knepley 
531ca3d3a14SMatthew G. Knepley   PetscFunctionBeginHot;
5329566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dm, &s));
5339566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(tdm, &ts));
5349566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetFieldDof(s, pf, f, &fpdof));
5359566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetFieldDof(s, pg, g, &gpdof));
5369566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetFieldDof(ts, pf, f, &fdof));
5379566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetFieldDof(ts, pg, g, &gdof));
5389566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(tv, &ta));
5399566063dSJacob Faibussowitsch   PetscCall(DMPlexPointLocalFieldRead(tdm, pf, f, ta, &tvaf));
5409566063dSJacob Faibussowitsch   PetscCall(DMPlexPointLocalFieldRead(tdm, pg, g, ta, &tvag));
541ca3d3a14SMatthew G. Knepley   if (l2g) {
542ca3d3a14SMatthew G. Knepley     switch (fdof) {
543d71ae5a4SJacob Faibussowitsch     case 4:
544d71ae5a4SJacob Faibussowitsch       DMPlex_MatMult2D_Internal(tvaf, gpdof, lda, a, a);
545d71ae5a4SJacob Faibussowitsch       break;
546d71ae5a4SJacob Faibussowitsch     case 9:
547d71ae5a4SJacob Faibussowitsch       DMPlex_MatMult3D_Internal(tvaf, gpdof, lda, a, a);
548d71ae5a4SJacob Faibussowitsch       break;
549ca3d3a14SMatthew G. Knepley     }
550ca3d3a14SMatthew G. Knepley     switch (gdof) {
551d71ae5a4SJacob Faibussowitsch     case 4:
552d71ae5a4SJacob Faibussowitsch       DMPlex_MatMultTransposeLeft2D_Internal(tvag, fpdof, lda, a, a);
553d71ae5a4SJacob Faibussowitsch       break;
554d71ae5a4SJacob Faibussowitsch     case 9:
555d71ae5a4SJacob Faibussowitsch       DMPlex_MatMultTransposeLeft3D_Internal(tvag, fpdof, lda, a, a);
556d71ae5a4SJacob Faibussowitsch       break;
557ca3d3a14SMatthew G. Knepley     }
558ca3d3a14SMatthew G. Knepley   } else {
559ca3d3a14SMatthew G. Knepley     switch (fdof) {
560d71ae5a4SJacob Faibussowitsch     case 4:
561d71ae5a4SJacob Faibussowitsch       DMPlex_MatMultTranspose2D_Internal(tvaf, gpdof, lda, a, a);
562d71ae5a4SJacob Faibussowitsch       break;
563d71ae5a4SJacob Faibussowitsch     case 9:
564d71ae5a4SJacob Faibussowitsch       DMPlex_MatMultTranspose3D_Internal(tvaf, gpdof, lda, a, a);
565d71ae5a4SJacob Faibussowitsch       break;
566ca3d3a14SMatthew G. Knepley     }
567ca3d3a14SMatthew G. Knepley     switch (gdof) {
568d71ae5a4SJacob Faibussowitsch     case 4:
569d71ae5a4SJacob Faibussowitsch       DMPlex_MatMultLeft2D_Internal(tvag, fpdof, lda, a, a);
570d71ae5a4SJacob Faibussowitsch       break;
571d71ae5a4SJacob Faibussowitsch     case 9:
572d71ae5a4SJacob Faibussowitsch       DMPlex_MatMultLeft3D_Internal(tvag, fpdof, lda, a, a);
573d71ae5a4SJacob Faibussowitsch       break;
574ca3d3a14SMatthew G. Knepley     }
575ca3d3a14SMatthew G. Knepley   }
5769566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(tv, &ta));
5773ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
578ca3d3a14SMatthew G. Knepley }
579ca3d3a14SMatthew G. Knepley 
580d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexBasisTransformPoint_Internal(DM dm, DM tdm, Vec tv, PetscInt p, PetscBool fieldActive[], PetscBool l2g, PetscScalar *a)
581d71ae5a4SJacob Faibussowitsch {
582ca3d3a14SMatthew G. Knepley   PetscSection    s;
583ca3d3a14SMatthew G. Knepley   PetscSection    clSection;
584ca3d3a14SMatthew G. Knepley   IS              clPoints;
585ca3d3a14SMatthew G. Knepley   const PetscInt *clp;
586ca3d3a14SMatthew G. Knepley   PetscInt       *points = NULL;
587ca3d3a14SMatthew G. Knepley   PetscInt        Nf, f, Np, cp, dof, d = 0;
588ca3d3a14SMatthew G. Knepley 
589ca3d3a14SMatthew G. Knepley   PetscFunctionBegin;
5909566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dm, &s));
5919566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetNumFields(s, &Nf));
59207218a29SMatthew G. Knepley   PetscCall(DMPlexGetCompressedClosure(dm, s, p, 0, &Np, &points, &clSection, &clPoints, &clp));
593ca3d3a14SMatthew G. Knepley   for (f = 0; f < Nf; ++f) {
594ca3d3a14SMatthew G. Knepley     for (cp = 0; cp < Np * 2; cp += 2) {
5959566063dSJacob Faibussowitsch       PetscCall(PetscSectionGetFieldDof(s, points[cp], f, &dof));
596ca3d3a14SMatthew G. Knepley       if (!dof) continue;
5979566063dSJacob Faibussowitsch       if (fieldActive[f]) PetscCall(DMPlexBasisTransformField_Internal(dm, tdm, tv, points[cp], f, l2g, &a[d]));
598ca3d3a14SMatthew G. Knepley       d += dof;
599ca3d3a14SMatthew G. Knepley     }
600ca3d3a14SMatthew G. Knepley   }
6019566063dSJacob Faibussowitsch   PetscCall(DMPlexRestoreCompressedClosure(dm, s, p, &Np, &points, &clSection, &clPoints, &clp));
6023ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
603ca3d3a14SMatthew G. Knepley }
604ca3d3a14SMatthew G. Knepley 
605d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexBasisTransformPointTensor_Internal(DM dm, DM tdm, Vec tv, PetscInt p, PetscBool l2g, PetscInt lda, PetscScalar *a)
606d71ae5a4SJacob Faibussowitsch {
607ca3d3a14SMatthew G. Knepley   PetscSection    s;
608ca3d3a14SMatthew G. Knepley   PetscSection    clSection;
609ca3d3a14SMatthew G. Knepley   IS              clPoints;
610ca3d3a14SMatthew G. Knepley   const PetscInt *clp;
611ca3d3a14SMatthew G. Knepley   PetscInt       *points = NULL;
6128bdb3c71SMatthew G. Knepley   PetscInt        Nf, f, g, Np, cpf, cpg, fdof, gdof, r, c = 0;
613ca3d3a14SMatthew G. Knepley 
614ca3d3a14SMatthew G. Knepley   PetscFunctionBegin;
6159566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dm, &s));
6169566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetNumFields(s, &Nf));
61707218a29SMatthew G. Knepley   PetscCall(DMPlexGetCompressedClosure(dm, s, p, 0, &Np, &points, &clSection, &clPoints, &clp));
618ca3d3a14SMatthew G. Knepley   for (f = 0, r = 0; f < Nf; ++f) {
619ca3d3a14SMatthew G. Knepley     for (cpf = 0; cpf < Np * 2; cpf += 2) {
6209566063dSJacob Faibussowitsch       PetscCall(PetscSectionGetFieldDof(s, points[cpf], f, &fdof));
621ca3d3a14SMatthew G. Knepley       for (g = 0, c = 0; g < Nf; ++g) {
622ca3d3a14SMatthew G. Knepley         for (cpg = 0; cpg < Np * 2; cpg += 2) {
6239566063dSJacob Faibussowitsch           PetscCall(PetscSectionGetFieldDof(s, points[cpg], g, &gdof));
6249566063dSJacob Faibussowitsch           PetscCall(DMPlexBasisTransformFieldTensor_Internal(dm, tdm, tv, points[cpf], f, points[cpg], g, l2g, lda, &a[r * lda + c]));
625ca3d3a14SMatthew G. Knepley           c += gdof;
626ca3d3a14SMatthew G. Knepley         }
627ca3d3a14SMatthew G. Knepley       }
62863a3b9bcSJacob Faibussowitsch       PetscCheck(c == lda, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid number of columns %" PetscInt_FMT " should be %" PetscInt_FMT, c, lda);
629ca3d3a14SMatthew G. Knepley       r += fdof;
630ca3d3a14SMatthew G. Knepley     }
631ca3d3a14SMatthew G. Knepley   }
63263a3b9bcSJacob Faibussowitsch   PetscCheck(r == lda, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid number of rows %" PetscInt_FMT " should be %" PetscInt_FMT, c, lda);
6339566063dSJacob Faibussowitsch   PetscCall(DMPlexRestoreCompressedClosure(dm, s, p, &Np, &points, &clSection, &clPoints, &clp));
6343ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
635ca3d3a14SMatthew G. Knepley }
636ca3d3a14SMatthew G. Knepley 
637d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexBasisTransform_Internal(DM dm, Vec lv, PetscBool l2g)
638d71ae5a4SJacob Faibussowitsch {
639ca3d3a14SMatthew G. Knepley   DM                 tdm;
640ca3d3a14SMatthew G. Knepley   Vec                tv;
641ca3d3a14SMatthew G. Knepley   PetscSection       ts, s;
642ca3d3a14SMatthew G. Knepley   const PetscScalar *ta;
643ca3d3a14SMatthew G. Knepley   PetscScalar       *a, *va;
644ca3d3a14SMatthew G. Knepley   PetscInt           pStart, pEnd, p, Nf, f;
645ca3d3a14SMatthew G. Knepley 
646ca3d3a14SMatthew G. Knepley   PetscFunctionBegin;
6479566063dSJacob Faibussowitsch   PetscCall(DMGetBasisTransformDM_Internal(dm, &tdm));
6489566063dSJacob Faibussowitsch   PetscCall(DMGetBasisTransformVec_Internal(dm, &tv));
6499566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(tdm, &ts));
6509566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dm, &s));
6519566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetChart(s, &pStart, &pEnd));
6529566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetNumFields(s, &Nf));
6539566063dSJacob Faibussowitsch   PetscCall(VecGetArray(lv, &a));
6549566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(tv, &ta));
655ca3d3a14SMatthew G. Knepley   for (p = pStart; p < pEnd; ++p) {
656ca3d3a14SMatthew G. Knepley     for (f = 0; f < Nf; ++f) {
6579566063dSJacob Faibussowitsch       PetscCall(DMPlexPointLocalFieldRef(dm, p, f, a, &va));
6589566063dSJacob Faibussowitsch       PetscCall(DMPlexBasisTransformField_Internal(dm, tdm, tv, p, f, l2g, va));
659ca3d3a14SMatthew G. Knepley     }
660ca3d3a14SMatthew G. Knepley   }
6619566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(lv, &a));
6629566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(tv, &ta));
6633ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
664ca3d3a14SMatthew G. Knepley }
665ca3d3a14SMatthew G. Knepley 
666ca3d3a14SMatthew G. Knepley /*@
667ca3d3a14SMatthew G. Knepley   DMPlexGlobalToLocalBasis - Transform the values in the given local vector from the global basis to the local basis
668ca3d3a14SMatthew G. Knepley 
669ca3d3a14SMatthew G. Knepley   Input Parameters:
670a1cb98faSBarry Smith + dm - The `DM`
671ca3d3a14SMatthew G. Knepley - lv - A local vector with values in the global basis
672ca3d3a14SMatthew G. Knepley 
6732fe279fdSBarry Smith   Output Parameter:
674ca3d3a14SMatthew G. Knepley . lv - A local vector with values in the local basis
675ca3d3a14SMatthew G. Knepley 
676ca3d3a14SMatthew G. Knepley   Level: developer
677ca3d3a14SMatthew G. Knepley 
678a1cb98faSBarry Smith   Note:
679a1cb98faSBarry Smith   This method is only intended to be called inside `DMGlobalToLocal()`. It is unlikely that a user will have a local vector full of coefficients for the global basis unless they are reimplementing GlobalToLocal.
680a1cb98faSBarry Smith 
681a1cb98faSBarry Smith .seealso: [](chapter_unstructured), `DM`, `DMPLEX`, `DMPlexLocalToGlobalBasis()`, `DMGetLocalSection()`, `DMPlexCreateBasisRotation()`
682ca3d3a14SMatthew G. Knepley @*/
683d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexGlobalToLocalBasis(DM dm, Vec lv)
684d71ae5a4SJacob Faibussowitsch {
685ca3d3a14SMatthew G. Knepley   PetscFunctionBegin;
686ca3d3a14SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
687ca3d3a14SMatthew G. Knepley   PetscValidHeaderSpecific(lv, VEC_CLASSID, 2);
6889566063dSJacob Faibussowitsch   PetscCall(DMPlexBasisTransform_Internal(dm, lv, PETSC_FALSE));
6893ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
690ca3d3a14SMatthew G. Knepley }
691ca3d3a14SMatthew G. Knepley 
692ca3d3a14SMatthew G. Knepley /*@
693ca3d3a14SMatthew G. Knepley   DMPlexLocalToGlobalBasis - Transform the values in the given local vector from the local basis to the global basis
694ca3d3a14SMatthew G. Knepley 
695ca3d3a14SMatthew G. Knepley   Input Parameters:
696a1cb98faSBarry Smith + dm - The `DM`
697ca3d3a14SMatthew G. Knepley - lv - A local vector with values in the local basis
698ca3d3a14SMatthew G. Knepley 
6992fe279fdSBarry Smith   Output Parameter:
700ca3d3a14SMatthew G. Knepley . lv - A local vector with values in the global basis
701ca3d3a14SMatthew G. Knepley 
702ca3d3a14SMatthew G. Knepley   Level: developer
703ca3d3a14SMatthew G. Knepley 
704a1cb98faSBarry Smith   Note:
705a1cb98faSBarry Smith   This method is only intended to be called inside `DMGlobalToLocal()`. It is unlikely that a user would want a local vector full of coefficients for the global basis unless they are reimplementing GlobalToLocal.
706a1cb98faSBarry Smith 
707a1cb98faSBarry Smith .seealso: [](chapter_unstructured), `DM`, `DMPLEX`, `DMPlexGlobalToLocalBasis()`, `DMGetLocalSection()`, `DMPlexCreateBasisRotation()`
708ca3d3a14SMatthew G. Knepley @*/
709d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexLocalToGlobalBasis(DM dm, Vec lv)
710d71ae5a4SJacob Faibussowitsch {
711ca3d3a14SMatthew G. Knepley   PetscFunctionBegin;
712ca3d3a14SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
713ca3d3a14SMatthew G. Knepley   PetscValidHeaderSpecific(lv, VEC_CLASSID, 2);
7149566063dSJacob Faibussowitsch   PetscCall(DMPlexBasisTransform_Internal(dm, lv, PETSC_TRUE));
7153ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
716ca3d3a14SMatthew G. Knepley }
717ca3d3a14SMatthew G. Knepley 
718ca3d3a14SMatthew G. Knepley /*@
719ca3d3a14SMatthew G. Knepley   DMPlexCreateBasisRotation - Create an internal transformation from the global basis, used to specify boundary conditions
720ca3d3a14SMatthew G. Knepley     and global solutions, to a local basis, appropriate for discretization integrals and assembly.
721ca3d3a14SMatthew G. Knepley 
722ca3d3a14SMatthew G. Knepley   Input Parameters:
723a1cb98faSBarry Smith + dm    - The `DM`
724ca3d3a14SMatthew G. Knepley . alpha - The first Euler angle, and in 2D the only one
725ca3d3a14SMatthew G. Knepley . beta  - The second Euler angle
726f0fc11ceSJed Brown - gamma - The third Euler angle
727ca3d3a14SMatthew G. Knepley 
728ca3d3a14SMatthew G. Knepley   Level: developer
729ca3d3a14SMatthew G. Knepley 
730a1cb98faSBarry Smith   Note:
731a1cb98faSBarry Smith   Following https://en.wikipedia.org/wiki/Euler_angles, we will specify Euler angles by extrinsic rotations, meaning that
732a1cb98faSBarry Smith   we rotate with respect to a fixed initial coordinate system, the local basis (x-y-z). The global basis (X-Y-Z) is reached as follows
733a1cb98faSBarry Smith .vb
734a1cb98faSBarry Smith    The XYZ system rotates about the z axis by alpha. The X axis is now at angle alpha with respect to the x axis.
735a1cb98faSBarry Smith    The XYZ system rotates again about the x axis by beta. The Z axis is now at angle beta with respect to the z axis.
736a1cb98faSBarry Smith    The XYZ system rotates a third time about the z axis by gamma.
737a1cb98faSBarry Smith .ve
738a1cb98faSBarry Smith 
739a1cb98faSBarry Smith .seealso: [](chapter_unstructured), `DM`, `DMPLEX`, `DMPlexGlobalToLocalBasis()`, `DMPlexLocalToGlobalBasis()`
740ca3d3a14SMatthew G. Knepley @*/
741d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexCreateBasisRotation(DM dm, PetscReal alpha, PetscReal beta, PetscReal gamma)
742d71ae5a4SJacob Faibussowitsch {
743ca3d3a14SMatthew G. Knepley   RotCtx  *rc;
744ca3d3a14SMatthew G. Knepley   PetscInt cdim;
745ca3d3a14SMatthew G. Knepley 
746362febeeSStefano Zampini   PetscFunctionBegin;
7479566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateDim(dm, &cdim));
7489566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(1, &rc));
749ca3d3a14SMatthew G. Knepley   dm->transformCtx       = rc;
750ca3d3a14SMatthew G. Knepley   dm->transformSetUp     = DMPlexBasisTransformSetUp_Rotation_Internal;
751ca3d3a14SMatthew G. Knepley   dm->transformDestroy   = DMPlexBasisTransformDestroy_Rotation_Internal;
752ca3d3a14SMatthew G. Knepley   dm->transformGetMatrix = DMPlexBasisTransformGetMatrix_Rotation_Internal;
753ca3d3a14SMatthew G. Knepley   rc->dim                = cdim;
754ca3d3a14SMatthew G. Knepley   rc->alpha              = alpha;
755ca3d3a14SMatthew G. Knepley   rc->beta               = beta;
756ca3d3a14SMatthew G. Knepley   rc->gamma              = gamma;
7579566063dSJacob Faibussowitsch   PetscCall((*dm->transformSetUp)(dm, dm->transformCtx));
7589566063dSJacob Faibussowitsch   PetscCall(DMConstructBasisTransform_Internal(dm));
7593ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
760ca3d3a14SMatthew G. Knepley }
761ca3d3a14SMatthew G. Knepley 
762b278463cSMatthew G. Knepley /*@C
763ece3a9fcSMatthew G. Knepley   DMPlexInsertBoundaryValuesEssential - Insert boundary values into a local vector using a function of the coordinates
764b278463cSMatthew G. Knepley 
765b278463cSMatthew G. Knepley   Input Parameters:
766a1cb98faSBarry Smith + dm     - The `DM`, with a `PetscDS` that matches the problem being constrained
767b278463cSMatthew G. Knepley . time   - The time
768b278463cSMatthew G. Knepley . field  - The field to constrain
7691c531cf8SMatthew G. Knepley . Nc     - The number of constrained field components, or 0 for all components
77020f4b53cSBarry Smith . comps  - An array of constrained component numbers, or `NULL` for all components
771a1cb98faSBarry Smith . label  - The `DMLabel` defining constrained points
772a1cb98faSBarry Smith . numids - The number of `DMLabel` ids for constrained points
773b278463cSMatthew G. Knepley . ids    - An array of ids for constrained points
774b278463cSMatthew G. Knepley . func   - A pointwise function giving boundary values
775b278463cSMatthew G. Knepley - ctx    - An optional user context for bcFunc
776b278463cSMatthew G. Knepley 
777b278463cSMatthew G. Knepley   Output Parameter:
778b278463cSMatthew G. Knepley . locX   - A local vector to receives the boundary values
779b278463cSMatthew G. Knepley 
780b278463cSMatthew G. Knepley   Level: developer
781b278463cSMatthew G. Knepley 
782a1cb98faSBarry Smith .seealso: [](chapter_unstructured), `DM`, `DMPLEX`, `DMLabel`, `DMPlexInsertBoundaryValuesEssentialField()`, `DMPlexInsertBoundaryValuesEssentialBdField()`, `DMAddBoundary()`
783b278463cSMatthew G. Knepley @*/
784d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexInsertBoundaryValuesEssential(DM dm, PetscReal time, PetscInt field, PetscInt Nc, const PetscInt comps[], DMLabel label, PetscInt numids, const PetscInt ids[], PetscErrorCode (*func)(PetscInt, PetscReal, const PetscReal[], PetscInt, PetscScalar *, void *), void *ctx, Vec locX)
785d71ae5a4SJacob Faibussowitsch {
7860163fd50SMatthew G. Knepley   PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal x[], PetscInt, PetscScalar *u, void *ctx);
78755f2e967SMatthew G. Knepley   void   **ctxs;
788d7ddef95SMatthew G. Knepley   PetscInt numFields;
789d7ddef95SMatthew G. Knepley 
790d7ddef95SMatthew G. Knepley   PetscFunctionBegin;
7919566063dSJacob Faibussowitsch   PetscCall(DMGetNumFields(dm, &numFields));
7929566063dSJacob Faibussowitsch   PetscCall(PetscCalloc2(numFields, &funcs, numFields, &ctxs));
793d7ddef95SMatthew G. Knepley   funcs[field] = func;
794d7ddef95SMatthew G. Knepley   ctxs[field]  = ctx;
7959566063dSJacob Faibussowitsch   PetscCall(DMProjectFunctionLabelLocal(dm, time, label, numids, ids, Nc, comps, funcs, ctxs, INSERT_BC_VALUES, locX));
7969566063dSJacob Faibussowitsch   PetscCall(PetscFree2(funcs, ctxs));
7973ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
798d7ddef95SMatthew G. Knepley }
799d7ddef95SMatthew G. Knepley 
800b278463cSMatthew G. Knepley /*@C
801ece3a9fcSMatthew G. Knepley   DMPlexInsertBoundaryValuesEssentialField - Insert boundary values into a local vector using a function of the coordinates and field data
802b278463cSMatthew G. Knepley 
803b278463cSMatthew G. Knepley   Input Parameters:
804a1cb98faSBarry Smith + dm     - The `DM`, with a `PetscDS` that matches the problem being constrained
805b278463cSMatthew G. Knepley . time   - The time
806b278463cSMatthew G. Knepley . locU   - A local vector with the input solution values
807b278463cSMatthew G. Knepley . field  - The field to constrain
8081c531cf8SMatthew G. Knepley . Nc     - The number of constrained field components, or 0 for all components
80920f4b53cSBarry Smith . comps  - An array of constrained component numbers, or `NULL` for all components
810a1cb98faSBarry Smith . label  - The `DMLabel` defining constrained points
811a1cb98faSBarry Smith . numids - The number of `DMLabel` ids for constrained points
812b278463cSMatthew G. Knepley . ids    - An array of ids for constrained points
813b278463cSMatthew G. Knepley . func   - A pointwise function giving boundary values
814b278463cSMatthew G. Knepley - ctx    - An optional user context for bcFunc
815b278463cSMatthew G. Knepley 
816b278463cSMatthew G. Knepley   Output Parameter:
817b278463cSMatthew G. Knepley . locX   - A local vector to receives the boundary values
818b278463cSMatthew G. Knepley 
819b278463cSMatthew G. Knepley   Level: developer
820b278463cSMatthew G. Knepley 
821a1cb98faSBarry Smith .seealso: [](chapter_unstructured), `DM`, `DMPLEX`, `DMPlexInsertBoundaryValuesEssential()`, `DMPlexInsertBoundaryValuesEssentialBdField()`, `DMAddBoundary()`
822b278463cSMatthew G. Knepley @*/
823d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexInsertBoundaryValuesEssentialField(DM dm, PetscReal time, Vec locU, PetscInt field, PetscInt Nc, const PetscInt comps[], DMLabel label, PetscInt numids, const PetscInt ids[], void (*func)(PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], PetscReal, const PetscReal[], PetscInt, const PetscScalar[], PetscScalar[]), void *ctx, Vec locX)
824d71ae5a4SJacob Faibussowitsch {
8259371c9d4SSatish Balay   void (**funcs)(PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], PetscReal, const PetscReal[], PetscInt, const PetscScalar[], PetscScalar[]);
826c60e475cSMatthew G. Knepley   void   **ctxs;
827c60e475cSMatthew G. Knepley   PetscInt numFields;
828c60e475cSMatthew G. Knepley 
829c60e475cSMatthew G. Knepley   PetscFunctionBegin;
8309566063dSJacob Faibussowitsch   PetscCall(DMGetNumFields(dm, &numFields));
8319566063dSJacob Faibussowitsch   PetscCall(PetscCalloc2(numFields, &funcs, numFields, &ctxs));
832c60e475cSMatthew G. Knepley   funcs[field] = func;
833c60e475cSMatthew G. Knepley   ctxs[field]  = ctx;
8349566063dSJacob Faibussowitsch   PetscCall(DMProjectFieldLabelLocal(dm, time, label, numids, ids, Nc, comps, locU, funcs, INSERT_BC_VALUES, locX));
8359566063dSJacob Faibussowitsch   PetscCall(PetscFree2(funcs, ctxs));
8363ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
837c60e475cSMatthew G. Knepley }
838c60e475cSMatthew G. Knepley 
839b278463cSMatthew G. Knepley /*@C
840d5b43468SJose E. Roman   DMPlexInsertBoundaryValuesEssentialBdField - Insert boundary values into a local vector using a function of the coordinates and boundary field data
841ece3a9fcSMatthew G. Knepley 
84220f4b53cSBarry Smith   Collective
843ece3a9fcSMatthew G. Knepley 
844ece3a9fcSMatthew G. Knepley   Input Parameters:
845a1cb98faSBarry Smith + dm     - The `DM`, with a `PetscDS` that matches the problem being constrained
846ece3a9fcSMatthew G. Knepley . time   - The time
847ece3a9fcSMatthew G. Knepley . locU   - A local vector with the input solution values
848ece3a9fcSMatthew G. Knepley . field  - The field to constrain
849ece3a9fcSMatthew G. Knepley . Nc     - The number of constrained field components, or 0 for all components
85020f4b53cSBarry Smith . comps  - An array of constrained component numbers, or `NULL` for all components
851a1cb98faSBarry Smith . label  - The `DMLabel` defining constrained points
852a1cb98faSBarry Smith . numids - The number of `DMLabel` ids for constrained points
853ece3a9fcSMatthew G. Knepley . ids    - An array of ids for constrained points
85420f4b53cSBarry Smith . func   - A pointwise function giving boundary values, the calling sequence is given in `DMProjectBdFieldLabelLocal()`
85520f4b53cSBarry Smith - ctx    - An optional user context for `func`
856ece3a9fcSMatthew G. Knepley 
857ece3a9fcSMatthew G. Knepley   Output Parameter:
858ece3a9fcSMatthew G. Knepley . locX   - A local vector to receive the boundary values
859ece3a9fcSMatthew G. Knepley 
860ece3a9fcSMatthew G. Knepley   Level: developer
861ece3a9fcSMatthew G. Knepley 
862a1cb98faSBarry Smith .seealso: [](chapter_unstructured), `DM`, `DMPLEX`, `DMProjectBdFieldLabelLocal()`, `DMPlexInsertBoundaryValuesEssential()`, `DMPlexInsertBoundaryValuesEssentialField()`, `DMAddBoundary()`
863ece3a9fcSMatthew G. Knepley @*/
864d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexInsertBoundaryValuesEssentialBdField(DM dm, PetscReal time, Vec locU, PetscInt field, PetscInt Nc, const PetscInt comps[], DMLabel label, PetscInt numids, const PetscInt ids[], void (*func)(PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], PetscReal, const PetscReal[], const PetscReal[], PetscInt, const PetscScalar[], PetscScalar[]), void *ctx, Vec locX)
865d71ae5a4SJacob Faibussowitsch {
8669371c9d4SSatish Balay   void (**funcs)(PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], PetscReal, const PetscReal[], const PetscReal[], PetscInt, const PetscScalar[], PetscScalar[]);
867ece3a9fcSMatthew G. Knepley   void   **ctxs;
868ece3a9fcSMatthew G. Knepley   PetscInt numFields;
869ece3a9fcSMatthew G. Knepley 
870ece3a9fcSMatthew G. Knepley   PetscFunctionBegin;
8719566063dSJacob Faibussowitsch   PetscCall(DMGetNumFields(dm, &numFields));
8729566063dSJacob Faibussowitsch   PetscCall(PetscCalloc2(numFields, &funcs, numFields, &ctxs));
873ece3a9fcSMatthew G. Knepley   funcs[field] = func;
874ece3a9fcSMatthew G. Knepley   ctxs[field]  = ctx;
8759566063dSJacob Faibussowitsch   PetscCall(DMProjectBdFieldLabelLocal(dm, time, label, numids, ids, Nc, comps, locU, funcs, INSERT_BC_VALUES, locX));
8769566063dSJacob Faibussowitsch   PetscCall(PetscFree2(funcs, ctxs));
8773ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
878ece3a9fcSMatthew G. Knepley }
879ece3a9fcSMatthew G. Knepley 
880ece3a9fcSMatthew G. Knepley /*@C
881b278463cSMatthew G. Knepley   DMPlexInsertBoundaryValuesRiemann - Insert boundary values into a local vector
882b278463cSMatthew G. Knepley 
883b278463cSMatthew G. Knepley   Input Parameters:
884a1cb98faSBarry Smith + dm     - The `DM`, with a `PetscDS` that matches the problem being constrained
885b278463cSMatthew G. Knepley . time   - The time
886b278463cSMatthew G. Knepley . faceGeometry - A vector with the FVM face geometry information
887b278463cSMatthew G. Knepley . cellGeometry - A vector with the FVM cell geometry information
888b278463cSMatthew G. Knepley . Grad         - A vector with the FVM cell gradient information
889b278463cSMatthew G. Knepley . field  - The field to constrain
8901c531cf8SMatthew G. Knepley . Nc     - The number of constrained field components, or 0 for all components
89120f4b53cSBarry Smith . comps  - An array of constrained component numbers, or `NULL` for all components
892a1cb98faSBarry Smith . label  - The `DMLabel` defining constrained points
893a1cb98faSBarry Smith . numids - The number of `DMLabel` ids for constrained points
894b278463cSMatthew G. Knepley . ids    - An array of ids for constrained points
895b278463cSMatthew G. Knepley . func   - A pointwise function giving boundary values
896b278463cSMatthew G. Knepley - ctx    - An optional user context for bcFunc
897b278463cSMatthew G. Knepley 
898b278463cSMatthew G. Knepley   Output Parameter:
899b278463cSMatthew G. Knepley . locX   - A local vector to receives the boundary values
900b278463cSMatthew G. Knepley 
901b278463cSMatthew G. Knepley   Level: developer
902b278463cSMatthew G. Knepley 
903a1cb98faSBarry Smith   Note:
904a1cb98faSBarry Smith   This implementation currently ignores the numcomps/comps argument from `DMAddBoundary()`
905a1cb98faSBarry Smith 
906a1cb98faSBarry Smith .seealso: [](chapter_unstructured), `DM`, `DMPLEX`, `DMPlexInsertBoundaryValuesEssential()`, `DMPlexInsertBoundaryValuesEssentialField()`, `DMAddBoundary()`
907b278463cSMatthew G. Knepley @*/
908d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexInsertBoundaryValuesRiemann(DM dm, PetscReal time, Vec faceGeometry, Vec cellGeometry, Vec Grad, PetscInt field, PetscInt Nc, const PetscInt comps[], DMLabel label, PetscInt numids, const PetscInt ids[], PetscErrorCode (*func)(PetscReal, const PetscReal *, const PetscReal *, const PetscScalar *, PetscScalar *, void *), void *ctx, Vec locX)
909d71ae5a4SJacob Faibussowitsch {
91061f58d28SMatthew G. Knepley   PetscDS            prob;
911da97024aSMatthew G. Knepley   PetscSF            sf;
912d7ddef95SMatthew G. Knepley   DM                 dmFace, dmCell, dmGrad;
91320369375SToby Isaac   const PetscScalar *facegeom, *cellgeom = NULL, *grad;
914da97024aSMatthew G. Knepley   const PetscInt    *leaves;
915d7ddef95SMatthew G. Knepley   PetscScalar       *x, *fx;
916520b3818SMatthew G. Knepley   PetscInt           dim, nleaves, loc, fStart, fEnd, pdim, i;
9173ba16761SJacob Faibussowitsch   PetscErrorCode     ierru = PETSC_SUCCESS;
918d7ddef95SMatthew G. Knepley 
919d7ddef95SMatthew G. Knepley   PetscFunctionBegin;
9209566063dSJacob Faibussowitsch   PetscCall(DMGetPointSF(dm, &sf));
9219566063dSJacob Faibussowitsch   PetscCall(PetscSFGetGraph(sf, NULL, &nleaves, &leaves, NULL));
922da97024aSMatthew G. Knepley   nleaves = PetscMax(0, nleaves);
9239566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dm, &dim));
9249566063dSJacob Faibussowitsch   PetscCall(DMPlexGetHeightStratum(dm, 1, &fStart, &fEnd));
9259566063dSJacob Faibussowitsch   PetscCall(DMGetDS(dm, &prob));
9269566063dSJacob Faibussowitsch   PetscCall(VecGetDM(faceGeometry, &dmFace));
9279566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(faceGeometry, &facegeom));
92820369375SToby Isaac   if (cellGeometry) {
9299566063dSJacob Faibussowitsch     PetscCall(VecGetDM(cellGeometry, &dmCell));
9309566063dSJacob Faibussowitsch     PetscCall(VecGetArrayRead(cellGeometry, &cellgeom));
93120369375SToby Isaac   }
932d7ddef95SMatthew G. Knepley   if (Grad) {
933c0a6632aSMatthew G. Knepley     PetscFV fv;
934c0a6632aSMatthew G. Knepley 
9359566063dSJacob Faibussowitsch     PetscCall(PetscDSGetDiscretization(prob, field, (PetscObject *)&fv));
9369566063dSJacob Faibussowitsch     PetscCall(VecGetDM(Grad, &dmGrad));
9379566063dSJacob Faibussowitsch     PetscCall(VecGetArrayRead(Grad, &grad));
9389566063dSJacob Faibussowitsch     PetscCall(PetscFVGetNumComponents(fv, &pdim));
9399566063dSJacob Faibussowitsch     PetscCall(DMGetWorkArray(dm, pdim, MPIU_SCALAR, &fx));
940d7ddef95SMatthew G. Knepley   }
9419566063dSJacob Faibussowitsch   PetscCall(VecGetArray(locX, &x));
942d7ddef95SMatthew G. Knepley   for (i = 0; i < numids; ++i) {
943d7ddef95SMatthew G. Knepley     IS              faceIS;
944d7ddef95SMatthew G. Knepley     const PetscInt *faces;
945d7ddef95SMatthew G. Knepley     PetscInt        numFaces, f;
946d7ddef95SMatthew G. Knepley 
9479566063dSJacob Faibussowitsch     PetscCall(DMLabelGetStratumIS(label, ids[i], &faceIS));
948d7ddef95SMatthew G. Knepley     if (!faceIS) continue; /* No points with that id on this process */
9499566063dSJacob Faibussowitsch     PetscCall(ISGetLocalSize(faceIS, &numFaces));
9509566063dSJacob Faibussowitsch     PetscCall(ISGetIndices(faceIS, &faces));
951d7ddef95SMatthew G. Knepley     for (f = 0; f < numFaces; ++f) {
952d7ddef95SMatthew G. Knepley       const PetscInt   face = faces[f], *cells;
953640bce14SSatish Balay       PetscFVFaceGeom *fg;
954d7ddef95SMatthew G. Knepley 
955d7ddef95SMatthew G. Knepley       if ((face < fStart) || (face >= fEnd)) continue; /* Refinement adds non-faces to labels */
9569566063dSJacob Faibussowitsch       PetscCall(PetscFindInt(face, nleaves, (PetscInt *)leaves, &loc));
957da97024aSMatthew G. Knepley       if (loc >= 0) continue;
9589566063dSJacob Faibussowitsch       PetscCall(DMPlexPointLocalRead(dmFace, face, facegeom, &fg));
9599566063dSJacob Faibussowitsch       PetscCall(DMPlexGetSupport(dm, face, &cells));
960d7ddef95SMatthew G. Knepley       if (Grad) {
961640bce14SSatish Balay         PetscFVCellGeom *cg;
962640bce14SSatish Balay         PetscScalar     *cx, *cgrad;
963d7ddef95SMatthew G. Knepley         PetscScalar     *xG;
964d7ddef95SMatthew G. Knepley         PetscReal        dx[3];
965d7ddef95SMatthew G. Knepley         PetscInt         d;
966d7ddef95SMatthew G. Knepley 
9679566063dSJacob Faibussowitsch         PetscCall(DMPlexPointLocalRead(dmCell, cells[0], cellgeom, &cg));
9689566063dSJacob Faibussowitsch         PetscCall(DMPlexPointLocalRead(dm, cells[0], x, &cx));
9699566063dSJacob Faibussowitsch         PetscCall(DMPlexPointLocalRead(dmGrad, cells[0], grad, &cgrad));
9709566063dSJacob Faibussowitsch         PetscCall(DMPlexPointLocalFieldRef(dm, cells[1], field, x, &xG));
971d7ddef95SMatthew G. Knepley         DMPlex_WaxpyD_Internal(dim, -1, cg->centroid, fg->centroid, dx);
972d7ddef95SMatthew G. Knepley         for (d = 0; d < pdim; ++d) fx[d] = cx[d] + DMPlex_DotD_Internal(dim, &cgrad[d * dim], dx);
9739566063dSJacob Faibussowitsch         PetscCall((*func)(time, fg->centroid, fg->normal, fx, xG, ctx));
974d7ddef95SMatthew G. Knepley       } else {
975640bce14SSatish Balay         PetscScalar *xI;
976d7ddef95SMatthew G. Knepley         PetscScalar *xG;
977d7ddef95SMatthew G. Knepley 
9789566063dSJacob Faibussowitsch         PetscCall(DMPlexPointLocalRead(dm, cells[0], x, &xI));
9799566063dSJacob Faibussowitsch         PetscCall(DMPlexPointLocalFieldRef(dm, cells[1], field, x, &xG));
980e735a8a9SMatthew G. Knepley         ierru = (*func)(time, fg->centroid, fg->normal, xI, xG, ctx);
981e735a8a9SMatthew G. Knepley         if (ierru) {
9829566063dSJacob Faibussowitsch           PetscCall(ISRestoreIndices(faceIS, &faces));
9839566063dSJacob Faibussowitsch           PetscCall(ISDestroy(&faceIS));
984e735a8a9SMatthew G. Knepley           goto cleanup;
985e735a8a9SMatthew G. Knepley         }
986d7ddef95SMatthew G. Knepley       }
987d7ddef95SMatthew G. Knepley     }
9889566063dSJacob Faibussowitsch     PetscCall(ISRestoreIndices(faceIS, &faces));
9899566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&faceIS));
990d7ddef95SMatthew G. Knepley   }
991e735a8a9SMatthew G. Knepley cleanup:
9929566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(locX, &x));
993d7ddef95SMatthew G. Knepley   if (Grad) {
9949566063dSJacob Faibussowitsch     PetscCall(DMRestoreWorkArray(dm, pdim, MPIU_SCALAR, &fx));
9959566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayRead(Grad, &grad));
996d7ddef95SMatthew G. Knepley   }
9979566063dSJacob Faibussowitsch   if (cellGeometry) PetscCall(VecRestoreArrayRead(cellGeometry, &cellgeom));
9989566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(faceGeometry, &facegeom));
9999566063dSJacob Faibussowitsch   PetscCall(ierru);
10003ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1001d7ddef95SMatthew G. Knepley }
1002d7ddef95SMatthew G. Knepley 
1003d71ae5a4SJacob Faibussowitsch static PetscErrorCode zero(PetscInt dim, PetscReal time, const PetscReal x[], PetscInt Nc, PetscScalar *u, void *ctx)
1004d71ae5a4SJacob Faibussowitsch {
10050c364540SMatthew G. Knepley   PetscInt c;
10060c364540SMatthew G. Knepley   for (c = 0; c < Nc; ++c) u[c] = 0.0;
10073ba16761SJacob Faibussowitsch   return PETSC_SUCCESS;
10080c364540SMatthew G. Knepley }
10090c364540SMatthew G. Knepley 
1010d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexInsertBoundaryValues_Plex(DM dm, PetscBool insertEssential, Vec locX, PetscReal time, Vec faceGeomFVM, Vec cellGeomFVM, Vec gradFVM)
1011d71ae5a4SJacob Faibussowitsch {
10120c364540SMatthew G. Knepley   PetscObject isZero;
1013e5e52638SMatthew G. Knepley   PetscDS     prob;
1014d7ddef95SMatthew G. Knepley   PetscInt    numBd, b;
101555f2e967SMatthew G. Knepley 
101655f2e967SMatthew G. Knepley   PetscFunctionBegin;
10179566063dSJacob Faibussowitsch   PetscCall(DMGetDS(dm, &prob));
10189566063dSJacob Faibussowitsch   PetscCall(PetscDSGetNumBoundary(prob, &numBd));
10199566063dSJacob Faibussowitsch   PetscCall(PetscObjectQuery((PetscObject)locX, "__Vec_bc_zero__", &isZero));
102055f2e967SMatthew G. Knepley   for (b = 0; b < numBd; ++b) {
102145480ffeSMatthew G. Knepley     PetscWeakForm           wf;
1022f971fd6bSMatthew G. Knepley     DMBoundaryConditionType type;
102345480ffeSMatthew G. Knepley     const char             *name;
1024d7ddef95SMatthew G. Knepley     DMLabel                 label;
10251c531cf8SMatthew G. Knepley     PetscInt                field, Nc;
10261c531cf8SMatthew G. Knepley     const PetscInt         *comps;
1027d7ddef95SMatthew G. Knepley     PetscObject             obj;
1028d7ddef95SMatthew G. Knepley     PetscClassId            id;
102945480ffeSMatthew G. Knepley     void (*bvfunc)(void);
1030d7ddef95SMatthew G. Knepley     PetscInt        numids;
1031d7ddef95SMatthew G. Knepley     const PetscInt *ids;
103255f2e967SMatthew G. Knepley     void           *ctx;
103355f2e967SMatthew G. Knepley 
10349566063dSJacob Faibussowitsch     PetscCall(PetscDSGetBoundary(prob, b, &wf, &type, &name, &label, &numids, &ids, &field, &Nc, &comps, &bvfunc, NULL, &ctx));
1035f971fd6bSMatthew G. Knepley     if (insertEssential != (type & DM_BC_ESSENTIAL)) continue;
10369566063dSJacob Faibussowitsch     PetscCall(DMGetField(dm, field, NULL, &obj));
10379566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetClassId(obj, &id));
1038d7ddef95SMatthew G. Knepley     if (id == PETSCFE_CLASSID) {
1039c60e475cSMatthew G. Knepley       switch (type) {
1040c60e475cSMatthew G. Knepley         /* for FEM, there is no insertion to be done for non-essential boundary conditions */
10419371c9d4SSatish Balay       case DM_BC_ESSENTIAL: {
104245480ffeSMatthew G. Knepley         PetscSimplePointFunc func = (PetscSimplePointFunc)bvfunc;
104345480ffeSMatthew G. Knepley 
104445480ffeSMatthew G. Knepley         if (isZero) func = zero;
10459566063dSJacob Faibussowitsch         PetscCall(DMPlexLabelAddCells(dm, label));
10469566063dSJacob Faibussowitsch         PetscCall(DMPlexInsertBoundaryValuesEssential(dm, time, field, Nc, comps, label, numids, ids, func, ctx, locX));
10479566063dSJacob Faibussowitsch         PetscCall(DMPlexLabelClearCells(dm, label));
10489371c9d4SSatish Balay       } break;
10499371c9d4SSatish Balay       case DM_BC_ESSENTIAL_FIELD: {
105045480ffeSMatthew G. Knepley         PetscPointFunc func = (PetscPointFunc)bvfunc;
105145480ffeSMatthew G. Knepley 
10529566063dSJacob Faibussowitsch         PetscCall(DMPlexLabelAddCells(dm, label));
10539566063dSJacob Faibussowitsch         PetscCall(DMPlexInsertBoundaryValuesEssentialField(dm, time, locX, field, Nc, comps, label, numids, ids, func, ctx, locX));
10549566063dSJacob Faibussowitsch         PetscCall(DMPlexLabelClearCells(dm, label));
10559371c9d4SSatish Balay       } break;
1056d71ae5a4SJacob Faibussowitsch       default:
1057d71ae5a4SJacob Faibussowitsch         break;
1058c60e475cSMatthew G. Knepley       }
1059d7ddef95SMatthew G. Knepley     } else if (id == PETSCFV_CLASSID) {
106045480ffeSMatthew G. Knepley       {
106145480ffeSMatthew G. Knepley         PetscErrorCode (*func)(PetscReal, const PetscReal *, const PetscReal *, const PetscScalar *, PetscScalar *, void *) = (PetscErrorCode(*)(PetscReal, const PetscReal *, const PetscReal *, const PetscScalar *, PetscScalar *, void *))bvfunc;
106245480ffeSMatthew G. Knepley 
106343ea7facSMatthew G. Knepley         if (!faceGeomFVM) continue;
10649566063dSJacob Faibussowitsch         PetscCall(DMPlexInsertBoundaryValuesRiemann(dm, time, faceGeomFVM, cellGeomFVM, gradFVM, field, Nc, comps, label, numids, ids, func, ctx, locX));
106545480ffeSMatthew G. Knepley       }
106663a3b9bcSJacob Faibussowitsch     } else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, field);
106755f2e967SMatthew G. Knepley   }
10683ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
106955f2e967SMatthew G. Knepley }
107055f2e967SMatthew G. Knepley 
1071d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexInsertTimeDerivativeBoundaryValues_Plex(DM dm, PetscBool insertEssential, Vec locX, PetscReal time, Vec faceGeomFVM, Vec cellGeomFVM, Vec gradFVM)
1072d71ae5a4SJacob Faibussowitsch {
107356cf3b9cSMatthew G. Knepley   PetscObject isZero;
107456cf3b9cSMatthew G. Knepley   PetscDS     prob;
107556cf3b9cSMatthew G. Knepley   PetscInt    numBd, b;
107656cf3b9cSMatthew G. Knepley 
107756cf3b9cSMatthew G. Knepley   PetscFunctionBegin;
10783ba16761SJacob Faibussowitsch   if (!locX) PetscFunctionReturn(PETSC_SUCCESS);
10799566063dSJacob Faibussowitsch   PetscCall(DMGetDS(dm, &prob));
10809566063dSJacob Faibussowitsch   PetscCall(PetscDSGetNumBoundary(prob, &numBd));
10819566063dSJacob Faibussowitsch   PetscCall(PetscObjectQuery((PetscObject)locX, "__Vec_bc_zero__", &isZero));
108256cf3b9cSMatthew G. Knepley   for (b = 0; b < numBd; ++b) {
108345480ffeSMatthew G. Knepley     PetscWeakForm           wf;
108456cf3b9cSMatthew G. Knepley     DMBoundaryConditionType type;
108545480ffeSMatthew G. Knepley     const char             *name;
108656cf3b9cSMatthew G. Knepley     DMLabel                 label;
108756cf3b9cSMatthew G. Knepley     PetscInt                field, Nc;
108856cf3b9cSMatthew G. Knepley     const PetscInt         *comps;
108956cf3b9cSMatthew G. Knepley     PetscObject             obj;
109056cf3b9cSMatthew G. Knepley     PetscClassId            id;
109156cf3b9cSMatthew G. Knepley     PetscInt                numids;
109256cf3b9cSMatthew G. Knepley     const PetscInt         *ids;
109345480ffeSMatthew G. Knepley     void (*bvfunc)(void);
109456cf3b9cSMatthew G. Knepley     void *ctx;
109556cf3b9cSMatthew G. Knepley 
10969566063dSJacob Faibussowitsch     PetscCall(PetscDSGetBoundary(prob, b, &wf, &type, &name, &label, &numids, &ids, &field, &Nc, &comps, NULL, &bvfunc, &ctx));
109756cf3b9cSMatthew G. Knepley     if (insertEssential != (type & DM_BC_ESSENTIAL)) continue;
10989566063dSJacob Faibussowitsch     PetscCall(DMGetField(dm, field, NULL, &obj));
10999566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetClassId(obj, &id));
110056cf3b9cSMatthew G. Knepley     if (id == PETSCFE_CLASSID) {
110156cf3b9cSMatthew G. Knepley       switch (type) {
110256cf3b9cSMatthew G. Knepley         /* for FEM, there is no insertion to be done for non-essential boundary conditions */
11039371c9d4SSatish Balay       case DM_BC_ESSENTIAL: {
110445480ffeSMatthew G. Knepley         PetscSimplePointFunc func_t = (PetscSimplePointFunc)bvfunc;
110545480ffeSMatthew G. Knepley 
110645480ffeSMatthew G. Knepley         if (isZero) func_t = zero;
11079566063dSJacob Faibussowitsch         PetscCall(DMPlexLabelAddCells(dm, label));
11089566063dSJacob Faibussowitsch         PetscCall(DMPlexInsertBoundaryValuesEssential(dm, time, field, Nc, comps, label, numids, ids, func_t, ctx, locX));
11099566063dSJacob Faibussowitsch         PetscCall(DMPlexLabelClearCells(dm, label));
11109371c9d4SSatish Balay       } break;
11119371c9d4SSatish Balay       case DM_BC_ESSENTIAL_FIELD: {
111245480ffeSMatthew G. Knepley         PetscPointFunc func_t = (PetscPointFunc)bvfunc;
111345480ffeSMatthew G. Knepley 
11149566063dSJacob Faibussowitsch         PetscCall(DMPlexLabelAddCells(dm, label));
11159566063dSJacob Faibussowitsch         PetscCall(DMPlexInsertBoundaryValuesEssentialField(dm, time, locX, field, Nc, comps, label, numids, ids, func_t, ctx, locX));
11169566063dSJacob Faibussowitsch         PetscCall(DMPlexLabelClearCells(dm, label));
11179371c9d4SSatish Balay       } break;
1118d71ae5a4SJacob Faibussowitsch       default:
1119d71ae5a4SJacob Faibussowitsch         break;
112056cf3b9cSMatthew G. Knepley       }
112163a3b9bcSJacob Faibussowitsch     } else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, field);
112256cf3b9cSMatthew G. Knepley   }
11233ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
112456cf3b9cSMatthew G. Knepley }
112556cf3b9cSMatthew G. Knepley 
1126f1d73a7aSMatthew G. Knepley /*@
1127f1d73a7aSMatthew G. Knepley   DMPlexInsertBoundaryValues - Puts coefficients which represent boundary values into the local solution vector
1128f1d73a7aSMatthew G. Knepley 
1129ed808b8fSJed Brown   Not Collective
1130ed808b8fSJed Brown 
1131f1d73a7aSMatthew G. Knepley   Input Parameters:
1132a1cb98faSBarry Smith + dm - The `DM`
1133f1d73a7aSMatthew G. Knepley . insertEssential - Should I insert essential (e.g. Dirichlet) or inessential (e.g. Neumann) boundary conditions
1134f1d73a7aSMatthew G. Knepley . time - The time
1135f1d73a7aSMatthew G. Knepley . faceGeomFVM - Face geometry data for FV discretizations
1136f1d73a7aSMatthew G. Knepley . cellGeomFVM - Cell geometry data for FV discretizations
1137f1d73a7aSMatthew G. Knepley - gradFVM - Gradient reconstruction data for FV discretizations
1138f1d73a7aSMatthew G. Knepley 
11392fe279fdSBarry Smith   Output Parameter:
1140f1d73a7aSMatthew G. Knepley . locX - Solution updated with boundary values
1141f1d73a7aSMatthew G. Knepley 
1142ed808b8fSJed Brown   Level: intermediate
1143f1d73a7aSMatthew G. Knepley 
1144a1cb98faSBarry Smith .seealso: [](chapter_unstructured), `DM`, `DMPLEX`, `DMProjectFunctionLabelLocal()`, `DMAddBoundary()`
1145f1d73a7aSMatthew G. Knepley @*/
1146d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexInsertBoundaryValues(DM dm, PetscBool insertEssential, Vec locX, PetscReal time, Vec faceGeomFVM, Vec cellGeomFVM, Vec gradFVM)
1147d71ae5a4SJacob Faibussowitsch {
1148f1d73a7aSMatthew G. Knepley   PetscFunctionBegin;
1149f1d73a7aSMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
1150064a246eSJacob Faibussowitsch   PetscValidHeaderSpecific(locX, VEC_CLASSID, 3);
1151ad540459SPierre Jolivet   if (faceGeomFVM) PetscValidHeaderSpecific(faceGeomFVM, VEC_CLASSID, 5);
1152ad540459SPierre Jolivet   if (cellGeomFVM) PetscValidHeaderSpecific(cellGeomFVM, VEC_CLASSID, 6);
1153ad540459SPierre Jolivet   if (gradFVM) PetscValidHeaderSpecific(gradFVM, VEC_CLASSID, 7);
1154cac4c232SBarry Smith   PetscTryMethod(dm, "DMPlexInsertBoundaryValues_C", (DM, PetscBool, Vec, PetscReal, Vec, Vec, Vec), (dm, insertEssential, locX, time, faceGeomFVM, cellGeomFVM, gradFVM));
11553ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1156f1d73a7aSMatthew G. Knepley }
1157f1d73a7aSMatthew G. Knepley 
115856cf3b9cSMatthew G. Knepley /*@
1159a5b23f4aSJose E. Roman   DMPlexInsertTimeDerivativeBoundaryValues - Puts coefficients which represent boundary values of the time derivative into the local solution vector
116056cf3b9cSMatthew G. Knepley 
116156cf3b9cSMatthew G. Knepley   Input Parameters:
1162a1cb98faSBarry Smith + dm - The `DM`
116356cf3b9cSMatthew G. Knepley . insertEssential - Should I insert essential (e.g. Dirichlet) or inessential (e.g. Neumann) boundary conditions
116456cf3b9cSMatthew G. Knepley . time - The time
116556cf3b9cSMatthew G. Knepley . faceGeomFVM - Face geometry data for FV discretizations
116656cf3b9cSMatthew G. Knepley . cellGeomFVM - Cell geometry data for FV discretizations
116756cf3b9cSMatthew G. Knepley - gradFVM - Gradient reconstruction data for FV discretizations
116856cf3b9cSMatthew G. Knepley 
11692fe279fdSBarry Smith   Output Parameter:
117056cf3b9cSMatthew G. Knepley . locX_t - Solution updated with boundary values
117156cf3b9cSMatthew G. Knepley 
117256cf3b9cSMatthew G. Knepley   Level: developer
117356cf3b9cSMatthew G. Knepley 
1174a1cb98faSBarry Smith .seealso: [](chapter_unstructured), `DM`, `DMPLEX`, `DMProjectFunctionLabelLocal()`
117556cf3b9cSMatthew G. Knepley @*/
1176d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexInsertTimeDerivativeBoundaryValues(DM dm, PetscBool insertEssential, Vec locX_t, PetscReal time, Vec faceGeomFVM, Vec cellGeomFVM, Vec gradFVM)
1177d71ae5a4SJacob Faibussowitsch {
117856cf3b9cSMatthew G. Knepley   PetscFunctionBegin;
117956cf3b9cSMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
1180ad540459SPierre Jolivet   if (locX_t) PetscValidHeaderSpecific(locX_t, VEC_CLASSID, 3);
1181ad540459SPierre Jolivet   if (faceGeomFVM) PetscValidHeaderSpecific(faceGeomFVM, VEC_CLASSID, 5);
1182ad540459SPierre Jolivet   if (cellGeomFVM) PetscValidHeaderSpecific(cellGeomFVM, VEC_CLASSID, 6);
1183ad540459SPierre Jolivet   if (gradFVM) PetscValidHeaderSpecific(gradFVM, VEC_CLASSID, 7);
1184cac4c232SBarry Smith   PetscTryMethod(dm, "DMPlexInsertTimeDerviativeBoundaryValues_C", (DM, PetscBool, Vec, PetscReal, Vec, Vec, Vec), (dm, insertEssential, locX_t, time, faceGeomFVM, cellGeomFVM, gradFVM));
11853ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
118656cf3b9cSMatthew G. Knepley }
118756cf3b9cSMatthew G. Knepley 
1188d71ae5a4SJacob Faibussowitsch PetscErrorCode DMComputeL2Diff_Plex(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal[], PetscInt, PetscScalar *, void *), void **ctxs, Vec X, PetscReal *diff)
1189d71ae5a4SJacob Faibussowitsch {
1190574a98acSMatthew G. Knepley   Vec localX;
1191574a98acSMatthew G. Knepley 
1192574a98acSMatthew G. Knepley   PetscFunctionBegin;
11939566063dSJacob Faibussowitsch   PetscCall(DMGetLocalVector(dm, &localX));
11949566063dSJacob Faibussowitsch   PetscCall(DMPlexInsertBoundaryValues(dm, PETSC_TRUE, localX, time, NULL, NULL, NULL));
11959566063dSJacob Faibussowitsch   PetscCall(DMGlobalToLocalBegin(dm, X, INSERT_VALUES, localX));
11969566063dSJacob Faibussowitsch   PetscCall(DMGlobalToLocalEnd(dm, X, INSERT_VALUES, localX));
11979566063dSJacob Faibussowitsch   PetscCall(DMPlexComputeL2DiffLocal(dm, time, funcs, ctxs, localX, diff));
11989566063dSJacob Faibussowitsch   PetscCall(DMRestoreLocalVector(dm, &localX));
11993ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1200574a98acSMatthew G. Knepley }
1201574a98acSMatthew G. Knepley 
1202574a98acSMatthew G. Knepley /*@C
1203ca3d3a14SMatthew G. Knepley   DMComputeL2DiffLocal - This function computes the L_2 difference between a function u and an FEM interpolant solution u_h.
1204574a98acSMatthew G. Knepley 
120520f4b53cSBarry Smith   Collective
1206c0f8e1fdSMatthew G. Knepley 
1207574a98acSMatthew G. Knepley   Input Parameters:
1208a1cb98faSBarry Smith + dm     - The `DM`
1209574a98acSMatthew G. Knepley . time   - The time
1210574a98acSMatthew G. Knepley . funcs  - The functions to evaluate for each field component
121120f4b53cSBarry Smith . ctxs   - Optional array of contexts to pass to each function, or `NULL`.
1212574a98acSMatthew G. Knepley - localX - The coefficient vector u_h, a local vector
1213574a98acSMatthew G. Knepley 
1214574a98acSMatthew G. Knepley   Output Parameter:
1215574a98acSMatthew G. Knepley . diff - The diff ||u - u_h||_2
1216574a98acSMatthew G. Knepley 
1217574a98acSMatthew G. Knepley   Level: developer
1218574a98acSMatthew G. Knepley 
1219a1cb98faSBarry Smith .seealso: [](chapter_unstructured), `DM`, `DMPLEX`, `DMProjectFunction()`, `DMComputeL2FieldDiff()`, `DMComputeL2GradientDiff()`
1220574a98acSMatthew G. Knepley @*/
1221d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeL2DiffLocal(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal[], PetscInt, PetscScalar *, void *), void **ctxs, Vec localX, PetscReal *diff)
1222d71ae5a4SJacob Faibussowitsch {
12230f09c10fSMatthew G. Knepley   const PetscInt   debug = ((DM_Plex *)dm->data)->printL2;
1224ca3d3a14SMatthew G. Knepley   DM               tdm;
1225ca3d3a14SMatthew G. Knepley   Vec              tv;
1226cb1e1211SMatthew G Knepley   PetscSection     section;
1227c5bbbd5bSMatthew G. Knepley   PetscQuadrature  quad;
12284bee2e38SMatthew G. Knepley   PetscFEGeom      fegeom;
122915496722SMatthew G. Knepley   PetscScalar     *funcVal, *interpolant;
12304bee2e38SMatthew G. Knepley   PetscReal       *coords, *gcoords;
1231cb1e1211SMatthew G Knepley   PetscReal        localDiff = 0.0;
12327318780aSToby Isaac   const PetscReal *quadWeights;
1233412e9a14SMatthew G. Knepley   PetscInt         dim, coordDim, numFields, numComponents = 0, qNc, Nq, cellHeight, cStart, cEnd, c, field, fieldOffset;
1234ca3d3a14SMatthew G. Knepley   PetscBool        transform;
1235cb1e1211SMatthew G Knepley 
1236cb1e1211SMatthew G Knepley   PetscFunctionBegin;
12379566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dm, &dim));
12389566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateDim(dm, &coordDim));
12392a4e142eSMatthew G. Knepley   fegeom.dimEmbed = coordDim;
12409566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dm, &section));
12419566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetNumFields(section, &numFields));
12429566063dSJacob Faibussowitsch   PetscCall(DMGetBasisTransformDM_Internal(dm, &tdm));
12439566063dSJacob Faibussowitsch   PetscCall(DMGetBasisTransformVec_Internal(dm, &tv));
12449566063dSJacob Faibussowitsch   PetscCall(DMHasBasisTransform(dm, &transform));
1245eae3dc7dSJacob Faibussowitsch   PetscCheck(numFields, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of fields is zero!");
1246cb1e1211SMatthew G Knepley   for (field = 0; field < numFields; ++field) {
124715496722SMatthew G. Knepley     PetscObject  obj;
124815496722SMatthew G. Knepley     PetscClassId id;
1249c5bbbd5bSMatthew G. Knepley     PetscInt     Nc;
1250c5bbbd5bSMatthew G. Knepley 
12519566063dSJacob Faibussowitsch     PetscCall(DMGetField(dm, field, NULL, &obj));
12529566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetClassId(obj, &id));
125315496722SMatthew G. Knepley     if (id == PETSCFE_CLASSID) {
125415496722SMatthew G. Knepley       PetscFE fe = (PetscFE)obj;
125515496722SMatthew G. Knepley 
12569566063dSJacob Faibussowitsch       PetscCall(PetscFEGetQuadrature(fe, &quad));
12579566063dSJacob Faibussowitsch       PetscCall(PetscFEGetNumComponents(fe, &Nc));
125815496722SMatthew G. Knepley     } else if (id == PETSCFV_CLASSID) {
125915496722SMatthew G. Knepley       PetscFV fv = (PetscFV)obj;
126015496722SMatthew G. Knepley 
12619566063dSJacob Faibussowitsch       PetscCall(PetscFVGetQuadrature(fv, &quad));
12629566063dSJacob Faibussowitsch       PetscCall(PetscFVGetNumComponents(fv, &Nc));
126363a3b9bcSJacob Faibussowitsch     } else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, field);
1264c5bbbd5bSMatthew G. Knepley     numComponents += Nc;
1265cb1e1211SMatthew G Knepley   }
12669566063dSJacob Faibussowitsch   PetscCall(PetscQuadratureGetData(quad, NULL, &qNc, &Nq, NULL, &quadWeights));
126763a3b9bcSJacob Faibussowitsch   PetscCheck(!(qNc != 1) || !(qNc != numComponents), PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_SIZ, "Quadrature components %" PetscInt_FMT " != %" PetscInt_FMT " field components", qNc, numComponents);
1268c9cb6370SYANG Zongze   PetscCall(PetscMalloc6(numComponents, &funcVal, numComponents, &interpolant, coordDim * (Nq + 1), &coords, Nq, &fegeom.detJ, coordDim * coordDim * Nq, &fegeom.J, coordDim * coordDim * Nq, &fegeom.invJ));
12699566063dSJacob Faibussowitsch   PetscCall(DMPlexGetVTKCellHeight(dm, &cellHeight));
12709566063dSJacob Faibussowitsch   PetscCall(DMPlexGetSimplexOrBoxCells(dm, cellHeight, &cStart, &cEnd));
1271cb1e1211SMatthew G Knepley   for (c = cStart; c < cEnd; ++c) {
1272a1e44745SMatthew G. Knepley     PetscScalar *x        = NULL;
1273cb1e1211SMatthew G Knepley     PetscReal    elemDiff = 0.0;
12749c3cf19fSMatthew G. Knepley     PetscInt     qc       = 0;
1275cb1e1211SMatthew G Knepley 
12769566063dSJacob Faibussowitsch     PetscCall(DMPlexComputeCellGeometryFEM(dm, c, quad, coords, fegeom.J, fegeom.invJ, fegeom.detJ));
12779566063dSJacob Faibussowitsch     PetscCall(DMPlexVecGetClosure(dm, NULL, localX, c, NULL, &x));
1278cb1e1211SMatthew G Knepley 
127915496722SMatthew G. Knepley     for (field = 0, fieldOffset = 0; field < numFields; ++field) {
128015496722SMatthew G. Knepley       PetscObject  obj;
128115496722SMatthew G. Knepley       PetscClassId id;
1282c110b1eeSGeoffrey Irving       void *const  ctx = ctxs ? ctxs[field] : NULL;
128315496722SMatthew G. Knepley       PetscInt     Nb, Nc, q, fc;
1284cb1e1211SMatthew G Knepley 
12859566063dSJacob Faibussowitsch       PetscCall(DMGetField(dm, field, NULL, &obj));
12869566063dSJacob Faibussowitsch       PetscCall(PetscObjectGetClassId(obj, &id));
12879371c9d4SSatish Balay       if (id == PETSCFE_CLASSID) {
12889371c9d4SSatish Balay         PetscCall(PetscFEGetNumComponents((PetscFE)obj, &Nc));
12899371c9d4SSatish Balay         PetscCall(PetscFEGetDimension((PetscFE)obj, &Nb));
12909371c9d4SSatish Balay       } else if (id == PETSCFV_CLASSID) {
12919371c9d4SSatish Balay         PetscCall(PetscFVGetNumComponents((PetscFV)obj, &Nc));
12929371c9d4SSatish Balay         Nb = 1;
12939371c9d4SSatish Balay       } else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, field);
1294cb1e1211SMatthew G Knepley       if (debug) {
1295cb1e1211SMatthew G Knepley         char title[1024];
129663a3b9bcSJacob Faibussowitsch         PetscCall(PetscSNPrintf(title, 1023, "Solution for Field %" PetscInt_FMT, field));
12979566063dSJacob Faibussowitsch         PetscCall(DMPrintCellVector(c, title, Nb, &x[fieldOffset]));
1298cb1e1211SMatthew G Knepley       }
12997318780aSToby Isaac       for (q = 0; q < Nq; ++q) {
13002a4e142eSMatthew G. Knepley         PetscFEGeom    qgeom;
1301d0609cedSBarry Smith         PetscErrorCode ierr;
13022a4e142eSMatthew G. Knepley 
13032a4e142eSMatthew G. Knepley         qgeom.dimEmbed = fegeom.dimEmbed;
13042a4e142eSMatthew G. Knepley         qgeom.J        = &fegeom.J[q * coordDim * coordDim];
13052a4e142eSMatthew G. Knepley         qgeom.invJ     = &fegeom.invJ[q * coordDim * coordDim];
13062a4e142eSMatthew G. Knepley         qgeom.detJ     = &fegeom.detJ[q];
130763a3b9bcSJacob Faibussowitsch         PetscCheck(fegeom.detJ[q] > 0.0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Invalid determinant %g for element %" PetscInt_FMT ", point %" PetscInt_FMT, (double)fegeom.detJ[q], c, q);
1308d3a7d86cSMatthew G. Knepley         if (transform) {
1309d3a7d86cSMatthew G. Knepley           gcoords = &coords[coordDim * Nq];
13109566063dSJacob Faibussowitsch           PetscCall(DMPlexBasisTransformApplyReal_Internal(dm, &coords[coordDim * q], PETSC_TRUE, coordDim, &coords[coordDim * q], gcoords, dm->transformCtx));
1311d3a7d86cSMatthew G. Knepley         } else {
1312d3a7d86cSMatthew G. Knepley           gcoords = &coords[coordDim * q];
1313d3a7d86cSMatthew G. Knepley         }
13149566063dSJacob Faibussowitsch         PetscCall(PetscArrayzero(funcVal, Nc));
1315ca3d3a14SMatthew G. Knepley         ierr = (*funcs[field])(coordDim, time, gcoords, Nc, funcVal, ctx);
1316e735a8a9SMatthew G. Knepley         if (ierr) {
13179566063dSJacob Faibussowitsch           PetscCall(DMPlexVecRestoreClosure(dm, NULL, localX, c, NULL, &x));
13189566063dSJacob Faibussowitsch           PetscCall(DMRestoreLocalVector(dm, &localX));
13199566063dSJacob Faibussowitsch           PetscCall(PetscFree6(funcVal, interpolant, coords, fegeom.detJ, fegeom.J, fegeom.invJ));
1320e735a8a9SMatthew G. Knepley         }
13219566063dSJacob Faibussowitsch         if (transform) PetscCall(DMPlexBasisTransformApply_Internal(dm, &coords[coordDim * q], PETSC_FALSE, Nc, funcVal, funcVal, dm->transformCtx));
13229566063dSJacob Faibussowitsch         if (id == PETSCFE_CLASSID) PetscCall(PetscFEInterpolate_Static((PetscFE)obj, &x[fieldOffset], &qgeom, q, interpolant));
13239566063dSJacob Faibussowitsch         else if (id == PETSCFV_CLASSID) PetscCall(PetscFVInterpolate_Static((PetscFV)obj, &x[fieldOffset], q, interpolant));
13242df84da0SMatthew G. Knepley         else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, field);
132515496722SMatthew G. Knepley         for (fc = 0; fc < Nc; ++fc) {
1326beaa55a6SMatthew G. Knepley           const PetscReal wt = quadWeights[q * qNc + (qNc == 1 ? 0 : qc + fc)];
13279371c9d4SSatish Balay           if (debug)
13289371c9d4SSatish Balay             PetscCall(PetscPrintf(PETSC_COMM_SELF, "    elem %" PetscInt_FMT " field %" PetscInt_FMT ",%" PetscInt_FMT " point %g %g %g diff %g (%g, %g)\n", c, field, fc, (double)(coordDim > 0 ? coords[coordDim * q] : 0.), (double)(coordDim > 1 ? coords[coordDim * q + 1] : 0.), (double)(coordDim > 2 ? coords[coordDim * q + 2] : 0.),
13299371c9d4SSatish Balay                                   (double)(PetscSqr(PetscRealPart(interpolant[fc] - funcVal[fc])) * wt * fegeom.detJ[q]), (double)PetscRealPart(interpolant[fc]), (double)PetscRealPart(funcVal[fc])));
13304bee2e38SMatthew G. Knepley           elemDiff += PetscSqr(PetscRealPart(interpolant[fc] - funcVal[fc])) * wt * fegeom.detJ[q];
1331cb1e1211SMatthew G Knepley         }
1332cb1e1211SMatthew G Knepley       }
13339c3cf19fSMatthew G. Knepley       fieldOffset += Nb;
1334beaa55a6SMatthew G. Knepley       qc += Nc;
1335cb1e1211SMatthew G Knepley     }
13369566063dSJacob Faibussowitsch     PetscCall(DMPlexVecRestoreClosure(dm, NULL, localX, c, NULL, &x));
13379566063dSJacob Faibussowitsch     if (debug) PetscCall(PetscPrintf(PETSC_COMM_SELF, "  elem %" PetscInt_FMT " diff %g\n", c, (double)elemDiff));
1338cb1e1211SMatthew G Knepley     localDiff += elemDiff;
1339cb1e1211SMatthew G Knepley   }
13409566063dSJacob Faibussowitsch   PetscCall(PetscFree6(funcVal, interpolant, coords, fegeom.detJ, fegeom.J, fegeom.invJ));
13411c2dc1cbSBarry Smith   PetscCall(MPIU_Allreduce(&localDiff, diff, 1, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)dm)));
1342cb1e1211SMatthew G Knepley   *diff = PetscSqrtReal(*diff);
13433ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1344cb1e1211SMatthew G Knepley }
1345cb1e1211SMatthew G Knepley 
1346d71ae5a4SJacob Faibussowitsch PetscErrorCode DMComputeL2GradientDiff_Plex(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal[], const PetscReal[], PetscInt, PetscScalar *, void *), void **ctxs, Vec X, const PetscReal n[], PetscReal *diff)
1347d71ae5a4SJacob Faibussowitsch {
13480f09c10fSMatthew G. Knepley   const PetscInt   debug = ((DM_Plex *)dm->data)->printL2;
1349ca3d3a14SMatthew G. Knepley   DM               tdm;
1350cb1e1211SMatthew G Knepley   PetscSection     section;
135140e14135SMatthew G. Knepley   PetscQuadrature  quad;
1352ca3d3a14SMatthew G. Knepley   Vec              localX, tv;
13539c3cf19fSMatthew G. Knepley   PetscScalar     *funcVal, *interpolant;
13542a4e142eSMatthew G. Knepley   const PetscReal *quadWeights;
13554bee2e38SMatthew G. Knepley   PetscFEGeom      fegeom;
13564bee2e38SMatthew G. Knepley   PetscReal       *coords, *gcoords;
135740e14135SMatthew G. Knepley   PetscReal        localDiff = 0.0;
1358485ad865SMatthew G. Knepley   PetscInt         dim, coordDim, qNc = 0, Nq = 0, numFields, numComponents = 0, cStart, cEnd, c, field, fieldOffset;
1359ca3d3a14SMatthew G. Knepley   PetscBool        transform;
1360cb1e1211SMatthew G Knepley 
1361cb1e1211SMatthew G Knepley   PetscFunctionBegin;
13629566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dm, &dim));
13639566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateDim(dm, &coordDim));
13644bee2e38SMatthew G. Knepley   fegeom.dimEmbed = coordDim;
13659566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dm, &section));
13669566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetNumFields(section, &numFields));
13679566063dSJacob Faibussowitsch   PetscCall(DMGetLocalVector(dm, &localX));
13689566063dSJacob Faibussowitsch   PetscCall(DMGlobalToLocalBegin(dm, X, INSERT_VALUES, localX));
13699566063dSJacob Faibussowitsch   PetscCall(DMGlobalToLocalEnd(dm, X, INSERT_VALUES, localX));
13709566063dSJacob Faibussowitsch   PetscCall(DMGetBasisTransformDM_Internal(dm, &tdm));
13719566063dSJacob Faibussowitsch   PetscCall(DMGetBasisTransformVec_Internal(dm, &tv));
13729566063dSJacob Faibussowitsch   PetscCall(DMHasBasisTransform(dm, &transform));
1373652b88e8SMatthew G. Knepley   for (field = 0; field < numFields; ++field) {
13740f2d7e86SMatthew G. Knepley     PetscFE  fe;
137540e14135SMatthew G. Knepley     PetscInt Nc;
1376652b88e8SMatthew G. Knepley 
13779566063dSJacob Faibussowitsch     PetscCall(DMGetField(dm, field, NULL, (PetscObject *)&fe));
13789566063dSJacob Faibussowitsch     PetscCall(PetscFEGetQuadrature(fe, &quad));
13799566063dSJacob Faibussowitsch     PetscCall(PetscFEGetNumComponents(fe, &Nc));
138040e14135SMatthew G. Knepley     numComponents += Nc;
1381652b88e8SMatthew G. Knepley   }
13829566063dSJacob Faibussowitsch   PetscCall(PetscQuadratureGetData(quad, NULL, &qNc, &Nq, NULL, &quadWeights));
138363a3b9bcSJacob Faibussowitsch   PetscCheck(!(qNc != 1) || !(qNc != numComponents), PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_SIZ, "Quadrature components %" PetscInt_FMT " != %" PetscInt_FMT " field components", qNc, numComponents);
13849566063dSJacob Faibussowitsch   /* PetscCall(DMProjectFunctionLocal(dm, fe, funcs, INSERT_BC_VALUES, localX)); */
1385c9cb6370SYANG Zongze   PetscCall(PetscMalloc6(numComponents, &funcVal, coordDim * (Nq + 1), &coords, coordDim * coordDim * Nq, &fegeom.J, coordDim * coordDim * Nq, &fegeom.invJ, numComponents * coordDim, &interpolant, Nq, &fegeom.detJ));
13869566063dSJacob Faibussowitsch   PetscCall(DMPlexGetSimplexOrBoxCells(dm, 0, &cStart, &cEnd));
138740e14135SMatthew G. Knepley   for (c = cStart; c < cEnd; ++c) {
138840e14135SMatthew G. Knepley     PetscScalar *x        = NULL;
138940e14135SMatthew G. Knepley     PetscReal    elemDiff = 0.0;
13909c3cf19fSMatthew G. Knepley     PetscInt     qc       = 0;
1391652b88e8SMatthew G. Knepley 
13929566063dSJacob Faibussowitsch     PetscCall(DMPlexComputeCellGeometryFEM(dm, c, quad, coords, fegeom.J, fegeom.invJ, fegeom.detJ));
13939566063dSJacob Faibussowitsch     PetscCall(DMPlexVecGetClosure(dm, NULL, localX, c, NULL, &x));
139440e14135SMatthew G. Knepley 
13959c3cf19fSMatthew G. Knepley     for (field = 0, fieldOffset = 0; field < numFields; ++field) {
13960f2d7e86SMatthew G. Knepley       PetscFE     fe;
139751259fa3SMatthew G. Knepley       void *const ctx = ctxs ? ctxs[field] : NULL;
13989c3cf19fSMatthew G. Knepley       PetscInt    Nb, Nc, q, fc;
139940e14135SMatthew G. Knepley 
14009566063dSJacob Faibussowitsch       PetscCall(DMGetField(dm, field, NULL, (PetscObject *)&fe));
14019566063dSJacob Faibussowitsch       PetscCall(PetscFEGetDimension(fe, &Nb));
14029566063dSJacob Faibussowitsch       PetscCall(PetscFEGetNumComponents(fe, &Nc));
140340e14135SMatthew G. Knepley       if (debug) {
140440e14135SMatthew G. Knepley         char title[1024];
14059566063dSJacob Faibussowitsch         PetscCall(PetscSNPrintf(title, 1023, "Solution for Field %" PetscInt_FMT, field));
14069566063dSJacob Faibussowitsch         PetscCall(DMPrintCellVector(c, title, Nb, &x[fieldOffset]));
1407652b88e8SMatthew G. Knepley       }
14089c3cf19fSMatthew G. Knepley       for (q = 0; q < Nq; ++q) {
14092a4e142eSMatthew G. Knepley         PetscFEGeom    qgeom;
1410d0609cedSBarry Smith         PetscErrorCode ierr;
14112a4e142eSMatthew G. Knepley 
14122a4e142eSMatthew G. Knepley         qgeom.dimEmbed = fegeom.dimEmbed;
14132a4e142eSMatthew G. Knepley         qgeom.J        = &fegeom.J[q * coordDim * coordDim];
14142a4e142eSMatthew G. Knepley         qgeom.invJ     = &fegeom.invJ[q * coordDim * coordDim];
14152a4e142eSMatthew G. Knepley         qgeom.detJ     = &fegeom.detJ[q];
14162df84da0SMatthew G. Knepley         PetscCheck(fegeom.detJ[q] > 0.0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Invalid determinant %g for element %" PetscInt_FMT ", quadrature points %" PetscInt_FMT, (double)fegeom.detJ[q], c, q);
1417d3a7d86cSMatthew G. Knepley         if (transform) {
1418d3a7d86cSMatthew G. Knepley           gcoords = &coords[coordDim * Nq];
14199566063dSJacob Faibussowitsch           PetscCall(DMPlexBasisTransformApplyReal_Internal(dm, &coords[coordDim * q], PETSC_TRUE, coordDim, &coords[coordDim * q], gcoords, dm->transformCtx));
1420d3a7d86cSMatthew G. Knepley         } else {
1421d3a7d86cSMatthew G. Knepley           gcoords = &coords[coordDim * q];
1422d3a7d86cSMatthew G. Knepley         }
14239566063dSJacob Faibussowitsch         PetscCall(PetscArrayzero(funcVal, Nc));
14244bee2e38SMatthew G. Knepley         ierr = (*funcs[field])(coordDim, time, gcoords, n, Nc, funcVal, ctx);
1425e735a8a9SMatthew G. Knepley         if (ierr) {
14269566063dSJacob Faibussowitsch           PetscCall(DMPlexVecRestoreClosure(dm, NULL, localX, c, NULL, &x));
14279566063dSJacob Faibussowitsch           PetscCall(DMRestoreLocalVector(dm, &localX));
14289566063dSJacob Faibussowitsch           PetscCall(PetscFree6(funcVal, coords, fegeom.J, fegeom.invJ, interpolant, fegeom.detJ));
1429e735a8a9SMatthew G. Knepley         }
14309566063dSJacob Faibussowitsch         if (transform) PetscCall(DMPlexBasisTransformApply_Internal(dm, &coords[coordDim * q], PETSC_FALSE, Nc, funcVal, funcVal, dm->transformCtx));
14319566063dSJacob Faibussowitsch         PetscCall(PetscFEInterpolateGradient_Static(fe, 1, &x[fieldOffset], &qgeom, q, interpolant));
14324bee2e38SMatthew G. Knepley         /* Overwrite with the dot product if the normal is given */
14334bee2e38SMatthew G. Knepley         if (n) {
14344bee2e38SMatthew G. Knepley           for (fc = 0; fc < Nc; ++fc) {
14354bee2e38SMatthew G. Knepley             PetscScalar sum = 0.0;
14364bee2e38SMatthew G. Knepley             PetscInt    d;
14374bee2e38SMatthew G. Knepley             for (d = 0; d < dim; ++d) sum += interpolant[fc * dim + d] * n[d];
14384bee2e38SMatthew G. Knepley             interpolant[fc] = sum;
14394bee2e38SMatthew G. Knepley           }
14404bee2e38SMatthew G. Knepley         }
14419c3cf19fSMatthew G. Knepley         for (fc = 0; fc < Nc; ++fc) {
1442beaa55a6SMatthew G. Knepley           const PetscReal wt = quadWeights[q * qNc + (qNc == 1 ? 0 : qc + fc)];
144363a3b9bcSJacob Faibussowitsch           if (debug) PetscCall(PetscPrintf(PETSC_COMM_SELF, "    elem %" PetscInt_FMT " fieldDer %" PetscInt_FMT ",%" PetscInt_FMT " diff %g\n", c, field, fc, (double)(PetscSqr(PetscRealPart(interpolant[fc] - funcVal[fc])) * wt * fegeom.detJ[q])));
14444bee2e38SMatthew G. Knepley           elemDiff += PetscSqr(PetscRealPart(interpolant[fc] - funcVal[fc])) * wt * fegeom.detJ[q];
144540e14135SMatthew G. Knepley         }
144640e14135SMatthew G. Knepley       }
14479c3cf19fSMatthew G. Knepley       fieldOffset += Nb;
14489c3cf19fSMatthew G. Knepley       qc += Nc;
144940e14135SMatthew G. Knepley     }
14509566063dSJacob Faibussowitsch     PetscCall(DMPlexVecRestoreClosure(dm, NULL, localX, c, NULL, &x));
145163a3b9bcSJacob Faibussowitsch     if (debug) PetscCall(PetscPrintf(PETSC_COMM_SELF, "  elem %" PetscInt_FMT " diff %g\n", c, (double)elemDiff));
145240e14135SMatthew G. Knepley     localDiff += elemDiff;
145340e14135SMatthew G. Knepley   }
14549566063dSJacob Faibussowitsch   PetscCall(PetscFree6(funcVal, coords, fegeom.J, fegeom.invJ, interpolant, fegeom.detJ));
14559566063dSJacob Faibussowitsch   PetscCall(DMRestoreLocalVector(dm, &localX));
14561c2dc1cbSBarry Smith   PetscCall(MPIU_Allreduce(&localDiff, diff, 1, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)dm)));
145740e14135SMatthew G. Knepley   *diff = PetscSqrtReal(*diff);
14583ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1459cb1e1211SMatthew G Knepley }
1460cb1e1211SMatthew G Knepley 
1461d71ae5a4SJacob Faibussowitsch PetscErrorCode DMComputeL2FieldDiff_Plex(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal[], PetscInt, PetscScalar *, void *), void **ctxs, Vec X, PetscReal *diff)
1462d71ae5a4SJacob Faibussowitsch {
14630f09c10fSMatthew G. Knepley   const PetscInt debug = ((DM_Plex *)dm->data)->printL2;
1464ca3d3a14SMatthew G. Knepley   DM             tdm;
1465083401c6SMatthew G. Knepley   DMLabel        depthLabel;
146673d901b8SMatthew G. Knepley   PetscSection   section;
1467ca3d3a14SMatthew G. Knepley   Vec            localX, tv;
146873d901b8SMatthew G. Knepley   PetscReal     *localDiff;
1469083401c6SMatthew G. Knepley   PetscInt       dim, depth, dE, Nf, f, Nds, s;
1470ca3d3a14SMatthew G. Knepley   PetscBool      transform;
147173d901b8SMatthew G. Knepley 
147273d901b8SMatthew G. Knepley   PetscFunctionBegin;
14739566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dm, &dim));
14749566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateDim(dm, &dE));
14759566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dm, &section));
14769566063dSJacob Faibussowitsch   PetscCall(DMGetLocalVector(dm, &localX));
14779566063dSJacob Faibussowitsch   PetscCall(DMGetBasisTransformDM_Internal(dm, &tdm));
14789566063dSJacob Faibussowitsch   PetscCall(DMGetBasisTransformVec_Internal(dm, &tv));
14799566063dSJacob Faibussowitsch   PetscCall(DMHasBasisTransform(dm, &transform));
14809566063dSJacob Faibussowitsch   PetscCall(DMGetNumFields(dm, &Nf));
14819566063dSJacob Faibussowitsch   PetscCall(DMPlexGetDepthLabel(dm, &depthLabel));
14829566063dSJacob Faibussowitsch   PetscCall(DMLabelGetNumValues(depthLabel, &depth));
1483083401c6SMatthew G. Knepley 
14849566063dSJacob Faibussowitsch   PetscCall(VecSet(localX, 0.0));
14859566063dSJacob Faibussowitsch   PetscCall(DMGlobalToLocalBegin(dm, X, INSERT_VALUES, localX));
14869566063dSJacob Faibussowitsch   PetscCall(DMGlobalToLocalEnd(dm, X, INSERT_VALUES, localX));
14879566063dSJacob Faibussowitsch   PetscCall(DMProjectFunctionLocal(dm, time, funcs, ctxs, INSERT_BC_VALUES, localX));
14889566063dSJacob Faibussowitsch   PetscCall(DMGetNumDS(dm, &Nds));
14899566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(Nf, &localDiff));
1490083401c6SMatthew G. Knepley   for (s = 0; s < Nds; ++s) {
1491083401c6SMatthew G. Knepley     PetscDS          ds;
1492083401c6SMatthew G. Knepley     DMLabel          label;
1493083401c6SMatthew G. Knepley     IS               fieldIS, pointIS;
1494083401c6SMatthew G. Knepley     const PetscInt  *fields, *points = NULL;
1495083401c6SMatthew G. Knepley     PetscQuadrature  quad;
1496083401c6SMatthew G. Knepley     const PetscReal *quadPoints, *quadWeights;
1497083401c6SMatthew G. Knepley     PetscFEGeom      fegeom;
1498083401c6SMatthew G. Knepley     PetscReal       *coords, *gcoords;
1499083401c6SMatthew G. Knepley     PetscScalar     *funcVal, *interpolant;
15005fedec97SMatthew G. Knepley     PetscBool        isCohesive;
1501083401c6SMatthew G. Knepley     PetscInt         qNc, Nq, totNc, cStart = 0, cEnd, c, dsNf;
150273d901b8SMatthew G. Knepley 
150307218a29SMatthew G. Knepley     PetscCall(DMGetRegionNumDS(dm, s, &label, &fieldIS, &ds, NULL));
15049566063dSJacob Faibussowitsch     PetscCall(ISGetIndices(fieldIS, &fields));
15059566063dSJacob Faibussowitsch     PetscCall(PetscDSIsCohesive(ds, &isCohesive));
15069566063dSJacob Faibussowitsch     PetscCall(PetscDSGetNumFields(ds, &dsNf));
15079566063dSJacob Faibussowitsch     PetscCall(PetscDSGetTotalComponents(ds, &totNc));
15089566063dSJacob Faibussowitsch     PetscCall(PetscDSGetQuadrature(ds, &quad));
15099566063dSJacob Faibussowitsch     PetscCall(PetscQuadratureGetData(quad, NULL, &qNc, &Nq, &quadPoints, &quadWeights));
151063a3b9bcSJacob Faibussowitsch     PetscCheck(!(qNc != 1) || !(qNc != totNc), PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Quadrature components %" PetscInt_FMT " != %" PetscInt_FMT " field components", qNc, totNc);
15119566063dSJacob Faibussowitsch     PetscCall(PetscCalloc6(totNc, &funcVal, totNc, &interpolant, dE * (Nq + 1), &coords, Nq, &fegeom.detJ, dE * dE * Nq, &fegeom.J, dE * dE * Nq, &fegeom.invJ));
1512083401c6SMatthew G. Knepley     if (!label) {
15139566063dSJacob Faibussowitsch       PetscCall(DMPlexGetSimplexOrBoxCells(dm, 0, &cStart, &cEnd));
1514083401c6SMatthew G. Knepley     } else {
15159566063dSJacob Faibussowitsch       PetscCall(DMLabelGetStratumIS(label, 1, &pointIS));
15169566063dSJacob Faibussowitsch       PetscCall(ISGetLocalSize(pointIS, &cEnd));
15179566063dSJacob Faibussowitsch       PetscCall(ISGetIndices(pointIS, &points));
1518083401c6SMatthew G. Knepley     }
151973d901b8SMatthew G. Knepley     for (c = cStart; c < cEnd; ++c) {
1520083401c6SMatthew G. Knepley       const PetscInt  cell = points ? points[c] : c;
152173d901b8SMatthew G. Knepley       PetscScalar    *x    = NULL;
15225fedec97SMatthew G. Knepley       const PetscInt *cone;
15235fedec97SMatthew G. Knepley       PetscInt        qc = 0, fOff = 0, dep;
152473d901b8SMatthew G. Knepley 
15259566063dSJacob Faibussowitsch       PetscCall(DMLabelGetValue(depthLabel, cell, &dep));
1526083401c6SMatthew G. Knepley       if (dep != depth - 1) continue;
15275fedec97SMatthew G. Knepley       if (isCohesive) {
15289566063dSJacob Faibussowitsch         PetscCall(DMPlexGetCone(dm, cell, &cone));
15299566063dSJacob Faibussowitsch         PetscCall(DMPlexComputeCellGeometryFEM(dm, cone[0], quad, coords, fegeom.J, fegeom.invJ, fegeom.detJ));
153096959cd1SMatthew G. Knepley       } else {
15319566063dSJacob Faibussowitsch         PetscCall(DMPlexComputeCellGeometryFEM(dm, cell, quad, coords, fegeom.J, fegeom.invJ, fegeom.detJ));
153296959cd1SMatthew G. Knepley       }
15339566063dSJacob Faibussowitsch       PetscCall(DMPlexVecGetClosure(dm, NULL, localX, cell, NULL, &x));
15345fedec97SMatthew G. Knepley       for (f = 0; f < dsNf; ++f) {
153515496722SMatthew G. Knepley         PetscObject  obj;
153615496722SMatthew G. Knepley         PetscClassId id;
1537083401c6SMatthew G. Knepley         void *const  ctx = ctxs ? ctxs[fields[f]] : NULL;
153815496722SMatthew G. Knepley         PetscInt     Nb, Nc, q, fc;
153915496722SMatthew G. Knepley         PetscReal    elemDiff = 0.0;
15405fedec97SMatthew G. Knepley         PetscBool    cohesive;
154115496722SMatthew G. Knepley 
15429566063dSJacob Faibussowitsch         PetscCall(PetscDSGetCohesive(ds, f, &cohesive));
15439566063dSJacob Faibussowitsch         PetscCall(PetscDSGetDiscretization(ds, f, &obj));
15449566063dSJacob Faibussowitsch         PetscCall(PetscObjectGetClassId(obj, &id));
15459371c9d4SSatish Balay         if (id == PETSCFE_CLASSID) {
15469371c9d4SSatish Balay           PetscCall(PetscFEGetNumComponents((PetscFE)obj, &Nc));
15479371c9d4SSatish Balay           PetscCall(PetscFEGetDimension((PetscFE)obj, &Nb));
15489371c9d4SSatish Balay         } else if (id == PETSCFV_CLASSID) {
15499371c9d4SSatish Balay           PetscCall(PetscFVGetNumComponents((PetscFV)obj, &Nc));
15509371c9d4SSatish Balay           Nb = 1;
15519371c9d4SSatish Balay         } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, fields[f]);
1552c82db6dbSMatthew G. Knepley         if (isCohesive && !cohesive) {
1553c82db6dbSMatthew G. Knepley           fOff += Nb * 2;
1554c82db6dbSMatthew G. Knepley           qc += Nc;
1555c82db6dbSMatthew G. Knepley           continue;
1556c82db6dbSMatthew G. Knepley         }
155773d901b8SMatthew G. Knepley         if (debug) {
155873d901b8SMatthew G. Knepley           char title[1024];
155963a3b9bcSJacob Faibussowitsch           PetscCall(PetscSNPrintf(title, 1023, "Solution for Field %" PetscInt_FMT, fields[f]));
15609566063dSJacob Faibussowitsch           PetscCall(DMPrintCellVector(cell, title, Nb, &x[fOff]));
156173d901b8SMatthew G. Knepley         }
15627318780aSToby Isaac         for (q = 0; q < Nq; ++q) {
15632a4e142eSMatthew G. Knepley           PetscFEGeom    qgeom;
1564d0609cedSBarry Smith           PetscErrorCode ierr;
15652a4e142eSMatthew G. Knepley 
15662a4e142eSMatthew G. Knepley           qgeom.dimEmbed = fegeom.dimEmbed;
1567083401c6SMatthew G. Knepley           qgeom.J        = &fegeom.J[q * dE * dE];
1568083401c6SMatthew G. Knepley           qgeom.invJ     = &fegeom.invJ[q * dE * dE];
15692a4e142eSMatthew G. Knepley           qgeom.detJ     = &fegeom.detJ[q];
157063a3b9bcSJacob Faibussowitsch           PetscCheck(fegeom.detJ[q] > 0.0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Invalid determinant %g for cell %" PetscInt_FMT ", quadrature point %" PetscInt_FMT, (double)fegeom.detJ[q], cell, q);
1571d3a7d86cSMatthew G. Knepley           if (transform) {
1572083401c6SMatthew G. Knepley             gcoords = &coords[dE * Nq];
15739566063dSJacob Faibussowitsch             PetscCall(DMPlexBasisTransformApplyReal_Internal(dm, &coords[dE * q], PETSC_TRUE, dE, &coords[dE * q], gcoords, dm->transformCtx));
1574d3a7d86cSMatthew G. Knepley           } else {
1575083401c6SMatthew G. Knepley             gcoords = &coords[dE * q];
1576d3a7d86cSMatthew G. Knepley           }
15772df84da0SMatthew G. Knepley           for (fc = 0; fc < Nc; ++fc) funcVal[fc] = 0.;
1578083401c6SMatthew G. Knepley           ierr = (*funcs[fields[f]])(dE, time, gcoords, Nc, funcVal, ctx);
1579e735a8a9SMatthew G. Knepley           if (ierr) {
15809566063dSJacob Faibussowitsch             PetscCall(DMPlexVecRestoreClosure(dm, NULL, localX, cell, NULL, &x));
15819566063dSJacob Faibussowitsch             PetscCall(DMRestoreLocalVector(dm, &localX));
15829566063dSJacob Faibussowitsch             PetscCall(PetscFree6(funcVal, interpolant, coords, fegeom.detJ, fegeom.J, fegeom.invJ));
1583e735a8a9SMatthew G. Knepley           }
15849566063dSJacob Faibussowitsch           if (transform) PetscCall(DMPlexBasisTransformApply_Internal(dm, &coords[dE * q], PETSC_FALSE, Nc, funcVal, funcVal, dm->transformCtx));
158596959cd1SMatthew G. Knepley           /* Call once for each face, except for lagrange field */
15869566063dSJacob Faibussowitsch           if (id == PETSCFE_CLASSID) PetscCall(PetscFEInterpolate_Static((PetscFE)obj, &x[fOff], &qgeom, q, interpolant));
15879566063dSJacob Faibussowitsch           else if (id == PETSCFV_CLASSID) PetscCall(PetscFVInterpolate_Static((PetscFV)obj, &x[fOff], q, interpolant));
158863a3b9bcSJacob Faibussowitsch           else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, fields[f]);
158915496722SMatthew G. Knepley           for (fc = 0; fc < Nc; ++fc) {
1590beaa55a6SMatthew G. Knepley             const PetscReal wt = quadWeights[q * qNc + (qNc == 1 ? 0 : qc + fc)];
15919371c9d4SSatish Balay             if (debug)
15929371c9d4SSatish Balay               PetscCall(PetscPrintf(PETSC_COMM_SELF, "    cell %" PetscInt_FMT " field %" PetscInt_FMT ",%" PetscInt_FMT " point %g %g %g diff %g\n", cell, fields[f], fc, (double)(dE > 0 ? coords[dE * q] : 0.), (double)(dE > 1 ? coords[dE * q + 1] : 0.), (double)(dE > 2 ? coords[dE * q + 2] : 0.),
15939371c9d4SSatish Balay                                     (double)(PetscSqr(PetscRealPart(interpolant[fc] - funcVal[fc])) * wt * fegeom.detJ[q])));
15944bee2e38SMatthew G. Knepley             elemDiff += PetscSqr(PetscRealPart(interpolant[fc] - funcVal[fc])) * wt * fegeom.detJ[q];
159573d901b8SMatthew G. Knepley           }
159673d901b8SMatthew G. Knepley         }
1597083401c6SMatthew G. Knepley         fOff += Nb;
15989c3cf19fSMatthew G. Knepley         qc += Nc;
1599083401c6SMatthew G. Knepley         localDiff[fields[f]] += elemDiff;
160063a3b9bcSJacob Faibussowitsch         if (debug) PetscCall(PetscPrintf(PETSC_COMM_SELF, "  cell %" PetscInt_FMT " field %" PetscInt_FMT " cum diff %g\n", cell, fields[f], (double)localDiff[fields[f]]));
160173d901b8SMatthew G. Knepley       }
16029566063dSJacob Faibussowitsch       PetscCall(DMPlexVecRestoreClosure(dm, NULL, localX, cell, NULL, &x));
1603083401c6SMatthew G. Knepley     }
1604083401c6SMatthew G. Knepley     if (label) {
16059566063dSJacob Faibussowitsch       PetscCall(ISRestoreIndices(pointIS, &points));
16069566063dSJacob Faibussowitsch       PetscCall(ISDestroy(&pointIS));
1607083401c6SMatthew G. Knepley     }
16089566063dSJacob Faibussowitsch     PetscCall(ISRestoreIndices(fieldIS, &fields));
16099566063dSJacob Faibussowitsch     PetscCall(PetscFree6(funcVal, interpolant, coords, fegeom.detJ, fegeom.J, fegeom.invJ));
161073d901b8SMatthew G. Knepley   }
16119566063dSJacob Faibussowitsch   PetscCall(DMRestoreLocalVector(dm, &localX));
16121c2dc1cbSBarry Smith   PetscCall(MPIU_Allreduce(localDiff, diff, Nf, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)dm)));
16139566063dSJacob Faibussowitsch   PetscCall(PetscFree(localDiff));
1614083401c6SMatthew G. Knepley   for (f = 0; f < Nf; ++f) diff[f] = PetscSqrtReal(diff[f]);
16153ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
161673d901b8SMatthew G. Knepley }
161773d901b8SMatthew G. Knepley 
1618e729f68cSMatthew G. Knepley /*@C
1619e729f68cSMatthew G. Knepley   DMPlexComputeL2DiffVec - This function computes the cellwise L_2 difference between a function u and an FEM interpolant solution u_h, and stores it in a Vec.
1620e729f68cSMatthew G. Knepley 
162120f4b53cSBarry Smith   Collective
1622c0f8e1fdSMatthew G. Knepley 
1623e729f68cSMatthew G. Knepley   Input Parameters:
1624a1cb98faSBarry Smith + dm    - The `DM`
16250163fd50SMatthew G. Knepley . time  - The time
162620f4b53cSBarry Smith . funcs - The functions to evaluate for each field component: `NULL` means that component does not contribute to error calculation
162720f4b53cSBarry Smith . ctxs  - Optional array of contexts to pass to each function, or `NULL`.
1628e729f68cSMatthew G. Knepley - X     - The coefficient vector u_h
1629e729f68cSMatthew G. Knepley 
1630e729f68cSMatthew G. Knepley   Output Parameter:
163120f4b53cSBarry Smith . D - A `Vec` which holds the difference ||u - u_h||_2 for each cell
1632e729f68cSMatthew G. Knepley 
1633e729f68cSMatthew G. Knepley   Level: developer
1634e729f68cSMatthew G. Knepley 
1635a1cb98faSBarry Smith .seealso: [](chapter_unstructured), `DM`, `DMPLEX`, `DMProjectFunction()`, `DMComputeL2Diff()`, `DMPlexComputeL2FieldDiff()`, `DMComputeL2GradientDiff()`
1636e729f68cSMatthew G. Knepley @*/
1637d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeL2DiffVec(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal[], PetscInt, PetscScalar *, void *), void **ctxs, Vec X, Vec D)
1638d71ae5a4SJacob Faibussowitsch {
1639e729f68cSMatthew G. Knepley   PetscSection     section;
1640e729f68cSMatthew G. Knepley   PetscQuadrature  quad;
1641e729f68cSMatthew G. Knepley   Vec              localX;
16424bee2e38SMatthew G. Knepley   PetscFEGeom      fegeom;
1643e729f68cSMatthew G. Knepley   PetscScalar     *funcVal, *interpolant;
16444bee2e38SMatthew G. Knepley   PetscReal       *coords;
1645e729f68cSMatthew G. Knepley   const PetscReal *quadPoints, *quadWeights;
1646485ad865SMatthew G. Knepley   PetscInt         dim, coordDim, numFields, numComponents = 0, qNc, Nq, cStart, cEnd, c, field, fieldOffset;
1647e729f68cSMatthew G. Knepley 
1648e729f68cSMatthew G. Knepley   PetscFunctionBegin;
16499566063dSJacob Faibussowitsch   PetscCall(VecSet(D, 0.0));
16509566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dm, &dim));
16519566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateDim(dm, &coordDim));
16529566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dm, &section));
16539566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetNumFields(section, &numFields));
16549566063dSJacob Faibussowitsch   PetscCall(DMGetLocalVector(dm, &localX));
16559566063dSJacob Faibussowitsch   PetscCall(DMProjectFunctionLocal(dm, time, funcs, ctxs, INSERT_BC_VALUES, localX));
16569566063dSJacob Faibussowitsch   PetscCall(DMGlobalToLocalBegin(dm, X, INSERT_VALUES, localX));
16579566063dSJacob Faibussowitsch   PetscCall(DMGlobalToLocalEnd(dm, X, INSERT_VALUES, localX));
1658e729f68cSMatthew G. Knepley   for (field = 0; field < numFields; ++field) {
1659e729f68cSMatthew G. Knepley     PetscObject  obj;
1660e729f68cSMatthew G. Knepley     PetscClassId id;
1661e729f68cSMatthew G. Knepley     PetscInt     Nc;
1662e729f68cSMatthew G. Knepley 
16639566063dSJacob Faibussowitsch     PetscCall(DMGetField(dm, field, NULL, &obj));
16649566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetClassId(obj, &id));
1665e729f68cSMatthew G. Knepley     if (id == PETSCFE_CLASSID) {
1666e729f68cSMatthew G. Knepley       PetscFE fe = (PetscFE)obj;
1667e729f68cSMatthew G. Knepley 
16689566063dSJacob Faibussowitsch       PetscCall(PetscFEGetQuadrature(fe, &quad));
16699566063dSJacob Faibussowitsch       PetscCall(PetscFEGetNumComponents(fe, &Nc));
1670e729f68cSMatthew G. Knepley     } else if (id == PETSCFV_CLASSID) {
1671e729f68cSMatthew G. Knepley       PetscFV fv = (PetscFV)obj;
1672e729f68cSMatthew G. Knepley 
16739566063dSJacob Faibussowitsch       PetscCall(PetscFVGetQuadrature(fv, &quad));
16749566063dSJacob Faibussowitsch       PetscCall(PetscFVGetNumComponents(fv, &Nc));
167563a3b9bcSJacob Faibussowitsch     } else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, field);
1676e729f68cSMatthew G. Knepley     numComponents += Nc;
1677e729f68cSMatthew G. Knepley   }
16789566063dSJacob Faibussowitsch   PetscCall(PetscQuadratureGetData(quad, NULL, &qNc, &Nq, &quadPoints, &quadWeights));
167963a3b9bcSJacob Faibussowitsch   PetscCheck(!(qNc != 1) || !(qNc != numComponents), PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_SIZ, "Quadrature components %" PetscInt_FMT " != %" PetscInt_FMT " field components", qNc, numComponents);
16809566063dSJacob Faibussowitsch   PetscCall(PetscMalloc6(numComponents, &funcVal, numComponents, &interpolant, coordDim * Nq, &coords, Nq, &fegeom.detJ, coordDim * coordDim * Nq, &fegeom.J, coordDim * coordDim * Nq, &fegeom.invJ));
16819566063dSJacob Faibussowitsch   PetscCall(DMPlexGetSimplexOrBoxCells(dm, 0, &cStart, &cEnd));
1682e729f68cSMatthew G. Knepley   for (c = cStart; c < cEnd; ++c) {
1683e729f68cSMatthew G. Knepley     PetscScalar *x        = NULL;
16846f288a59SMatthew G. Knepley     PetscScalar  elemDiff = 0.0;
16859c3cf19fSMatthew G. Knepley     PetscInt     qc       = 0;
1686e729f68cSMatthew G. Knepley 
16879566063dSJacob Faibussowitsch     PetscCall(DMPlexComputeCellGeometryFEM(dm, c, quad, coords, fegeom.J, fegeom.invJ, fegeom.detJ));
16889566063dSJacob Faibussowitsch     PetscCall(DMPlexVecGetClosure(dm, NULL, localX, c, NULL, &x));
1689e729f68cSMatthew G. Knepley 
1690e729f68cSMatthew G. Knepley     for (field = 0, fieldOffset = 0; field < numFields; ++field) {
1691e729f68cSMatthew G. Knepley       PetscObject  obj;
1692e729f68cSMatthew G. Knepley       PetscClassId id;
1693e729f68cSMatthew G. Knepley       void *const  ctx = ctxs ? ctxs[field] : NULL;
1694e729f68cSMatthew G. Knepley       PetscInt     Nb, Nc, q, fc;
1695e729f68cSMatthew G. Knepley 
16969566063dSJacob Faibussowitsch       PetscCall(DMGetField(dm, field, NULL, &obj));
16979566063dSJacob Faibussowitsch       PetscCall(PetscObjectGetClassId(obj, &id));
16989371c9d4SSatish Balay       if (id == PETSCFE_CLASSID) {
16999371c9d4SSatish Balay         PetscCall(PetscFEGetNumComponents((PetscFE)obj, &Nc));
17009371c9d4SSatish Balay         PetscCall(PetscFEGetDimension((PetscFE)obj, &Nb));
17019371c9d4SSatish Balay       } else if (id == PETSCFV_CLASSID) {
17029371c9d4SSatish Balay         PetscCall(PetscFVGetNumComponents((PetscFV)obj, &Nc));
17039371c9d4SSatish Balay         Nb = 1;
17049371c9d4SSatish Balay       } else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, field);
170523f34ed2SToby Isaac       if (funcs[field]) {
17067318780aSToby Isaac         for (q = 0; q < Nq; ++q) {
17072a4e142eSMatthew G. Knepley           PetscFEGeom qgeom;
17082a4e142eSMatthew G. Knepley 
17092a4e142eSMatthew G. Knepley           qgeom.dimEmbed = fegeom.dimEmbed;
17102a4e142eSMatthew G. Knepley           qgeom.J        = &fegeom.J[q * coordDim * coordDim];
17112a4e142eSMatthew G. Knepley           qgeom.invJ     = &fegeom.invJ[q * coordDim * coordDim];
17122a4e142eSMatthew G. Knepley           qgeom.detJ     = &fegeom.detJ[q];
171363a3b9bcSJacob Faibussowitsch           PetscCheck(fegeom.detJ[q] > 0.0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Invalid determinant %g for element %" PetscInt_FMT ", quadrature points %" PetscInt_FMT, (double)fegeom.detJ[q], c, q);
17149566063dSJacob Faibussowitsch           PetscCall((*funcs[field])(coordDim, time, &coords[q * coordDim], Nc, funcVal, ctx));
1715c3e24edfSBarry Smith #if defined(needs_fix_with_return_code_argument)
1716e735a8a9SMatthew G. Knepley           if (ierr) {
17179566063dSJacob Faibussowitsch             PetscCall(DMPlexVecRestoreClosure(dm, NULL, localX, c, NULL, &x));
17189566063dSJacob Faibussowitsch             PetscCall(PetscFree6(funcVal, interpolant, coords, fegeom.detJ, fegeom.J, fegeom.invJ));
17199566063dSJacob Faibussowitsch             PetscCall(DMRestoreLocalVector(dm, &localX));
1720e735a8a9SMatthew G. Knepley           }
1721c3e24edfSBarry Smith #endif
17229566063dSJacob Faibussowitsch           if (id == PETSCFE_CLASSID) PetscCall(PetscFEInterpolate_Static((PetscFE)obj, &x[fieldOffset], &qgeom, q, interpolant));
17239566063dSJacob Faibussowitsch           else if (id == PETSCFV_CLASSID) PetscCall(PetscFVInterpolate_Static((PetscFV)obj, &x[fieldOffset], q, interpolant));
172463a3b9bcSJacob Faibussowitsch           else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, field);
1725e729f68cSMatthew G. Knepley           for (fc = 0; fc < Nc; ++fc) {
1726beaa55a6SMatthew G. Knepley             const PetscReal wt = quadWeights[q * qNc + (qNc == 1 ? 0 : qc + fc)];
17274bee2e38SMatthew G. Knepley             elemDiff += PetscSqr(PetscRealPart(interpolant[fc] - funcVal[fc])) * wt * fegeom.detJ[q];
1728e729f68cSMatthew G. Knepley           }
1729e729f68cSMatthew G. Knepley         }
173023f34ed2SToby Isaac       }
1731beaa55a6SMatthew G. Knepley       fieldOffset += Nb;
17329c3cf19fSMatthew G. Knepley       qc += Nc;
1733e729f68cSMatthew G. Knepley     }
17349566063dSJacob Faibussowitsch     PetscCall(DMPlexVecRestoreClosure(dm, NULL, localX, c, NULL, &x));
17359566063dSJacob Faibussowitsch     PetscCall(VecSetValue(D, c - cStart, elemDiff, INSERT_VALUES));
1736e729f68cSMatthew G. Knepley   }
17379566063dSJacob Faibussowitsch   PetscCall(PetscFree6(funcVal, interpolant, coords, fegeom.detJ, fegeom.J, fegeom.invJ));
17389566063dSJacob Faibussowitsch   PetscCall(DMRestoreLocalVector(dm, &localX));
17399566063dSJacob Faibussowitsch   PetscCall(VecSqrtAbs(D));
17403ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1741e729f68cSMatthew G. Knepley }
1742e729f68cSMatthew G. Knepley 
17435f0b18bfSMatthew G. Knepley /*@
174420f4b53cSBarry Smith   DMPlexComputeClementInterpolant - This function computes the L2 projection of the cellwise values of a function u onto P1
17455f0b18bfSMatthew G. Knepley 
174620f4b53cSBarry Smith   Collective
17475f0b18bfSMatthew G. Knepley 
17485f0b18bfSMatthew G. Knepley   Input Parameters:
1749a1cb98faSBarry Smith + dm - The `DM`
17505f0b18bfSMatthew G. Knepley - locX  - The coefficient vector u_h
17515f0b18bfSMatthew G. Knepley 
17525f0b18bfSMatthew G. Knepley   Output Parameter:
1753a1cb98faSBarry Smith . locC - A `Vec` which holds the Clement interpolant of the function
17545f0b18bfSMatthew G. Knepley 
17555f0b18bfSMatthew G. Knepley   Level: developer
17565f0b18bfSMatthew G. Knepley 
1757a1cb98faSBarry Smith   Note:
1758a1cb98faSBarry Smith   $ u_h(v_i) = \sum_{T_i \in support(v_i)} |T_i| u_h(T_i) / \sum_{T_i \in support(v_i)} |T_i| $ where $ |T_i| $ is the cell volume
1759a1cb98faSBarry Smith 
1760a1cb98faSBarry Smith .seealso: [](chapter_unstructured), `DM`, `DMPLEX`, `DMProjectFunction()`, `DMComputeL2Diff()`, `DMPlexComputeL2FieldDiff()`, `DMComputeL2GradientDiff()`
17615f0b18bfSMatthew G. Knepley @*/
1762d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeClementInterpolant(DM dm, Vec locX, Vec locC)
1763d71ae5a4SJacob Faibussowitsch {
17645f0b18bfSMatthew G. Knepley   PetscInt         debug = ((DM_Plex *)dm->data)->printFEM;
17655f0b18bfSMatthew G. Knepley   DM               dmc;
17665f0b18bfSMatthew G. Knepley   PetscQuadrature  quad;
17675f0b18bfSMatthew G. Knepley   PetscScalar     *interpolant, *valsum;
17685f0b18bfSMatthew G. Knepley   PetscFEGeom      fegeom;
17695f0b18bfSMatthew G. Knepley   PetscReal       *coords;
17705f0b18bfSMatthew G. Knepley   const PetscReal *quadPoints, *quadWeights;
17715f0b18bfSMatthew G. Knepley   PetscInt         dim, cdim, Nf, f, Nc = 0, Nq, qNc, cStart, cEnd, vStart, vEnd, v;
17725f0b18bfSMatthew G. Knepley 
17735f0b18bfSMatthew G. Knepley   PetscFunctionBegin;
17749566063dSJacob Faibussowitsch   PetscCall(PetscCitationsRegister(ClementCitation, &Clementcite));
17759566063dSJacob Faibussowitsch   PetscCall(VecGetDM(locC, &dmc));
17769566063dSJacob Faibussowitsch   PetscCall(VecSet(locC, 0.0));
17779566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dm, &dim));
17789566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateDim(dm, &cdim));
17795f0b18bfSMatthew G. Knepley   fegeom.dimEmbed = cdim;
17809566063dSJacob Faibussowitsch   PetscCall(DMGetNumFields(dm, &Nf));
17815f0b18bfSMatthew G. Knepley   PetscCheck(Nf > 0, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of fields is zero!");
17825f0b18bfSMatthew G. Knepley   for (f = 0; f < Nf; ++f) {
17835f0b18bfSMatthew G. Knepley     PetscObject  obj;
17845f0b18bfSMatthew G. Knepley     PetscClassId id;
17855f0b18bfSMatthew G. Knepley     PetscInt     fNc;
17865f0b18bfSMatthew G. Knepley 
17879566063dSJacob Faibussowitsch     PetscCall(DMGetField(dm, f, NULL, &obj));
17889566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetClassId(obj, &id));
17895f0b18bfSMatthew G. Knepley     if (id == PETSCFE_CLASSID) {
17905f0b18bfSMatthew G. Knepley       PetscFE fe = (PetscFE)obj;
17915f0b18bfSMatthew G. Knepley 
17929566063dSJacob Faibussowitsch       PetscCall(PetscFEGetQuadrature(fe, &quad));
17939566063dSJacob Faibussowitsch       PetscCall(PetscFEGetNumComponents(fe, &fNc));
17945f0b18bfSMatthew G. Knepley     } else if (id == PETSCFV_CLASSID) {
17955f0b18bfSMatthew G. Knepley       PetscFV fv = (PetscFV)obj;
17965f0b18bfSMatthew G. Knepley 
17979566063dSJacob Faibussowitsch       PetscCall(PetscFVGetQuadrature(fv, &quad));
17989566063dSJacob Faibussowitsch       PetscCall(PetscFVGetNumComponents(fv, &fNc));
179963a3b9bcSJacob Faibussowitsch     } else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, f);
18005f0b18bfSMatthew G. Knepley     Nc += fNc;
18015f0b18bfSMatthew G. Knepley   }
18029566063dSJacob Faibussowitsch   PetscCall(PetscQuadratureGetData(quad, NULL, &qNc, &Nq, &quadPoints, &quadWeights));
180363a3b9bcSJacob Faibussowitsch   PetscCheck(qNc == 1, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_SIZ, "Quadrature components %" PetscInt_FMT " > 1", qNc);
18049566063dSJacob Faibussowitsch   PetscCall(PetscMalloc6(Nc * 2, &valsum, Nc, &interpolant, cdim * Nq, &coords, Nq, &fegeom.detJ, cdim * cdim * Nq, &fegeom.J, cdim * cdim * Nq, &fegeom.invJ));
18059566063dSJacob Faibussowitsch   PetscCall(DMPlexGetDepthStratum(dm, 0, &vStart, &vEnd));
18069566063dSJacob Faibussowitsch   PetscCall(DMPlexGetSimplexOrBoxCells(dm, 0, &cStart, &cEnd));
18075f0b18bfSMatthew G. Knepley   for (v = vStart; v < vEnd; ++v) {
18085f0b18bfSMatthew G. Knepley     PetscScalar volsum = 0.0;
18095f0b18bfSMatthew G. Knepley     PetscInt   *star   = NULL;
18105f0b18bfSMatthew G. Knepley     PetscInt    starSize, st, fc;
18115f0b18bfSMatthew G. Knepley 
18129566063dSJacob Faibussowitsch     PetscCall(PetscArrayzero(valsum, Nc));
18139566063dSJacob Faibussowitsch     PetscCall(DMPlexGetTransitiveClosure(dm, v, PETSC_FALSE, &starSize, &star));
18145f0b18bfSMatthew G. Knepley     for (st = 0; st < starSize * 2; st += 2) {
18155f0b18bfSMatthew G. Knepley       const PetscInt cell = star[st];
18165f0b18bfSMatthew G. Knepley       PetscScalar   *val  = &valsum[Nc];
18175f0b18bfSMatthew G. Knepley       PetscScalar   *x    = NULL;
18185f0b18bfSMatthew G. Knepley       PetscReal      vol  = 0.0;
18195f0b18bfSMatthew G. Knepley       PetscInt       foff = 0;
18205f0b18bfSMatthew G. Knepley 
18215f0b18bfSMatthew G. Knepley       if ((cell < cStart) || (cell >= cEnd)) continue;
18229566063dSJacob Faibussowitsch       PetscCall(DMPlexComputeCellGeometryFEM(dm, cell, quad, coords, fegeom.J, fegeom.invJ, fegeom.detJ));
18239566063dSJacob Faibussowitsch       PetscCall(DMPlexVecGetClosure(dm, NULL, locX, cell, NULL, &x));
18245f0b18bfSMatthew G. Knepley       for (f = 0; f < Nf; ++f) {
18255f0b18bfSMatthew G. Knepley         PetscObject  obj;
18265f0b18bfSMatthew G. Knepley         PetscClassId id;
18275f0b18bfSMatthew G. Knepley         PetscInt     Nb, fNc, q;
18285f0b18bfSMatthew G. Knepley 
18299566063dSJacob Faibussowitsch         PetscCall(PetscArrayzero(val, Nc));
18309566063dSJacob Faibussowitsch         PetscCall(DMGetField(dm, f, NULL, &obj));
18319566063dSJacob Faibussowitsch         PetscCall(PetscObjectGetClassId(obj, &id));
18329371c9d4SSatish Balay         if (id == PETSCFE_CLASSID) {
18339371c9d4SSatish Balay           PetscCall(PetscFEGetNumComponents((PetscFE)obj, &fNc));
18349371c9d4SSatish Balay           PetscCall(PetscFEGetDimension((PetscFE)obj, &Nb));
18359371c9d4SSatish Balay         } else if (id == PETSCFV_CLASSID) {
18369371c9d4SSatish Balay           PetscCall(PetscFVGetNumComponents((PetscFV)obj, &fNc));
18379371c9d4SSatish Balay           Nb = 1;
18389371c9d4SSatish Balay         } else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, f);
18395f0b18bfSMatthew G. Knepley         for (q = 0; q < Nq; ++q) {
18405f0b18bfSMatthew G. Knepley           const PetscReal wt = quadWeights[q] * fegeom.detJ[q];
18415f0b18bfSMatthew G. Knepley           PetscFEGeom     qgeom;
18425f0b18bfSMatthew G. Knepley 
18435f0b18bfSMatthew G. Knepley           qgeom.dimEmbed = fegeom.dimEmbed;
18445f0b18bfSMatthew G. Knepley           qgeom.J        = &fegeom.J[q * cdim * cdim];
18455f0b18bfSMatthew G. Knepley           qgeom.invJ     = &fegeom.invJ[q * cdim * cdim];
18465f0b18bfSMatthew G. Knepley           qgeom.detJ     = &fegeom.detJ[q];
184763a3b9bcSJacob Faibussowitsch           PetscCheck(fegeom.detJ[q] > 0.0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Invalid determinant %g for element %" PetscInt_FMT ", quadrature points %" PetscInt_FMT, (double)fegeom.detJ[q], cell, q);
18489566063dSJacob Faibussowitsch           if (id == PETSCFE_CLASSID) PetscCall(PetscFEInterpolate_Static((PetscFE)obj, &x[foff], &qgeom, q, interpolant));
184963a3b9bcSJacob Faibussowitsch           else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, f);
18505f0b18bfSMatthew G. Knepley           for (fc = 0; fc < fNc; ++fc) val[foff + fc] += interpolant[fc] * wt;
18515f0b18bfSMatthew G. Knepley           vol += wt;
18525f0b18bfSMatthew G. Knepley         }
18535f0b18bfSMatthew G. Knepley         foff += Nb;
18545f0b18bfSMatthew G. Knepley       }
18559566063dSJacob Faibussowitsch       PetscCall(DMPlexVecRestoreClosure(dm, NULL, locX, cell, NULL, &x));
18565f0b18bfSMatthew G. Knepley       for (fc = 0; fc < Nc; ++fc) valsum[fc] += val[fc];
18575f0b18bfSMatthew G. Knepley       volsum += vol;
18585f0b18bfSMatthew G. Knepley       if (debug) {
18599566063dSJacob Faibussowitsch         PetscCall(PetscPrintf(PETSC_COMM_SELF, "Vertex %" PetscInt_FMT " Cell %" PetscInt_FMT " value: [", v, cell));
18605f0b18bfSMatthew G. Knepley         for (fc = 0; fc < Nc; ++fc) {
18619566063dSJacob Faibussowitsch           if (fc) PetscCall(PetscPrintf(PETSC_COMM_SELF, ", "));
18629566063dSJacob Faibussowitsch           PetscCall(PetscPrintf(PETSC_COMM_SELF, "%g", (double)PetscRealPart(val[fc])));
18635f0b18bfSMatthew G. Knepley         }
18649566063dSJacob Faibussowitsch         PetscCall(PetscPrintf(PETSC_COMM_SELF, "]\n"));
18655f0b18bfSMatthew G. Knepley       }
18665f0b18bfSMatthew G. Knepley     }
18675f0b18bfSMatthew G. Knepley     for (fc = 0; fc < Nc; ++fc) valsum[fc] /= volsum;
18689566063dSJacob Faibussowitsch     PetscCall(DMPlexRestoreTransitiveClosure(dm, v, PETSC_FALSE, &starSize, &star));
18699566063dSJacob Faibussowitsch     PetscCall(DMPlexVecSetClosure(dmc, NULL, locC, v, valsum, INSERT_VALUES));
18705f0b18bfSMatthew G. Knepley   }
18719566063dSJacob Faibussowitsch   PetscCall(PetscFree6(valsum, interpolant, coords, fegeom.detJ, fegeom.J, fegeom.invJ));
18723ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
18735f0b18bfSMatthew G. Knepley }
18745f0b18bfSMatthew G. Knepley 
18755f0b18bfSMatthew G. Knepley /*@
187620f4b53cSBarry Smith   DMPlexComputeGradientClementInterpolant - This function computes the L2 projection of the cellwise gradient of a function u onto P1
18771555c271SMatthew G. Knepley 
187820f4b53cSBarry Smith   Collective
1879c0f8e1fdSMatthew G. Knepley 
18801555c271SMatthew G. Knepley   Input Parameters:
1881a1cb98faSBarry Smith + dm - The `DM`
18825f0b18bfSMatthew G. Knepley - locX  - The coefficient vector u_h
18831555c271SMatthew G. Knepley 
18841555c271SMatthew G. Knepley   Output Parameter:
1885a1cb98faSBarry Smith . locC - A `Vec` which holds the Clement interpolant of the gradient
18861555c271SMatthew G. Knepley 
18871555c271SMatthew G. Knepley   Level: developer
18881555c271SMatthew G. Knepley 
1889a1cb98faSBarry Smith   Note:
1890a1cb98faSBarry Smith   $\nabla u_h(v_i) = \sum_{T_i \in support(v_i)} |T_i| \nabla u_h(T_i) / \sum_{T_i \in support(v_i)} |T_i| $ where $ |T_i| $ is the cell volume
1891a1cb98faSBarry Smith 
1892a1cb98faSBarry Smith .seealso: [](chapter_unstructured), `DM`, `DMPLEX`, `DMProjectFunction()`, `DMComputeL2Diff()`, `DMPlexComputeL2FieldDiff()`, `DMComputeL2GradientDiff()`
18931555c271SMatthew G. Knepley @*/
1894d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeGradientClementInterpolant(DM dm, Vec locX, Vec locC)
1895d71ae5a4SJacob Faibussowitsch {
1896db1066baSMatthew G. Knepley   DM_Plex         *mesh  = (DM_Plex *)dm->data;
1897db1066baSMatthew G. Knepley   PetscInt         debug = mesh->printFEM;
18981555c271SMatthew G. Knepley   DM               dmC;
18991555c271SMatthew G. Knepley   PetscQuadrature  quad;
19001555c271SMatthew G. Knepley   PetscScalar     *interpolant, *gradsum;
19014bee2e38SMatthew G. Knepley   PetscFEGeom      fegeom;
19024bee2e38SMatthew G. Knepley   PetscReal       *coords;
19031555c271SMatthew G. Knepley   const PetscReal *quadPoints, *quadWeights;
1904485ad865SMatthew G. Knepley   PetscInt         dim, coordDim, numFields, numComponents = 0, qNc, Nq, cStart, cEnd, vStart, vEnd, v, field, fieldOffset;
19051555c271SMatthew G. Knepley 
19061555c271SMatthew G. Knepley   PetscFunctionBegin;
19079566063dSJacob Faibussowitsch   PetscCall(PetscCitationsRegister(ClementCitation, &Clementcite));
19089566063dSJacob Faibussowitsch   PetscCall(VecGetDM(locC, &dmC));
19099566063dSJacob Faibussowitsch   PetscCall(VecSet(locC, 0.0));
19109566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dm, &dim));
19119566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateDim(dm, &coordDim));
19124bee2e38SMatthew G. Knepley   fegeom.dimEmbed = coordDim;
19139566063dSJacob Faibussowitsch   PetscCall(DMGetNumFields(dm, &numFields));
19145f80ce2aSJacob Faibussowitsch   PetscCheck(numFields, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of fields is zero!");
19151555c271SMatthew G. Knepley   for (field = 0; field < numFields; ++field) {
19161555c271SMatthew G. Knepley     PetscObject  obj;
19171555c271SMatthew G. Knepley     PetscClassId id;
19181555c271SMatthew G. Knepley     PetscInt     Nc;
19191555c271SMatthew G. Knepley 
19209566063dSJacob Faibussowitsch     PetscCall(DMGetField(dm, field, NULL, &obj));
19219566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetClassId(obj, &id));
19221555c271SMatthew G. Knepley     if (id == PETSCFE_CLASSID) {
19231555c271SMatthew G. Knepley       PetscFE fe = (PetscFE)obj;
19241555c271SMatthew G. Knepley 
19259566063dSJacob Faibussowitsch       PetscCall(PetscFEGetQuadrature(fe, &quad));
19269566063dSJacob Faibussowitsch       PetscCall(PetscFEGetNumComponents(fe, &Nc));
19271555c271SMatthew G. Knepley     } else if (id == PETSCFV_CLASSID) {
19281555c271SMatthew G. Knepley       PetscFV fv = (PetscFV)obj;
19291555c271SMatthew G. Knepley 
19309566063dSJacob Faibussowitsch       PetscCall(PetscFVGetQuadrature(fv, &quad));
19319566063dSJacob Faibussowitsch       PetscCall(PetscFVGetNumComponents(fv, &Nc));
193263a3b9bcSJacob Faibussowitsch     } else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, field);
19331555c271SMatthew G. Knepley     numComponents += Nc;
19341555c271SMatthew G. Knepley   }
19359566063dSJacob Faibussowitsch   PetscCall(PetscQuadratureGetData(quad, NULL, &qNc, &Nq, &quadPoints, &quadWeights));
193663a3b9bcSJacob Faibussowitsch   PetscCheck(!(qNc != 1) || !(qNc != numComponents), PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_SIZ, "Quadrature components %" PetscInt_FMT " != %" PetscInt_FMT " field components", qNc, numComponents);
19379566063dSJacob Faibussowitsch   PetscCall(PetscMalloc6(coordDim * numComponents * 2, &gradsum, coordDim * numComponents, &interpolant, coordDim * Nq, &coords, Nq, &fegeom.detJ, coordDim * coordDim * Nq, &fegeom.J, coordDim * coordDim * Nq, &fegeom.invJ));
19389566063dSJacob Faibussowitsch   PetscCall(DMPlexGetDepthStratum(dm, 0, &vStart, &vEnd));
19399566063dSJacob Faibussowitsch   PetscCall(DMPlexGetSimplexOrBoxCells(dm, 0, &cStart, &cEnd));
19401555c271SMatthew G. Knepley   for (v = vStart; v < vEnd; ++v) {
19411555c271SMatthew G. Knepley     PetscScalar volsum = 0.0;
19421555c271SMatthew G. Knepley     PetscInt   *star   = NULL;
19431555c271SMatthew G. Knepley     PetscInt    starSize, st, d, fc;
19441555c271SMatthew G. Knepley 
19459566063dSJacob Faibussowitsch     PetscCall(PetscArrayzero(gradsum, coordDim * numComponents));
19469566063dSJacob Faibussowitsch     PetscCall(DMPlexGetTransitiveClosure(dm, v, PETSC_FALSE, &starSize, &star));
19471555c271SMatthew G. Knepley     for (st = 0; st < starSize * 2; st += 2) {
19481555c271SMatthew G. Knepley       const PetscInt cell = star[st];
19491555c271SMatthew G. Knepley       PetscScalar   *grad = &gradsum[coordDim * numComponents];
19501555c271SMatthew G. Knepley       PetscScalar   *x    = NULL;
19511555c271SMatthew G. Knepley       PetscReal      vol  = 0.0;
19521555c271SMatthew G. Knepley 
19531555c271SMatthew G. Knepley       if ((cell < cStart) || (cell >= cEnd)) continue;
19549566063dSJacob Faibussowitsch       PetscCall(DMPlexComputeCellGeometryFEM(dm, cell, quad, coords, fegeom.J, fegeom.invJ, fegeom.detJ));
19559566063dSJacob Faibussowitsch       PetscCall(DMPlexVecGetClosure(dm, NULL, locX, cell, NULL, &x));
19561555c271SMatthew G. Knepley       for (field = 0, fieldOffset = 0; field < numFields; ++field) {
19571555c271SMatthew G. Knepley         PetscObject  obj;
19581555c271SMatthew G. Knepley         PetscClassId id;
19591555c271SMatthew G. Knepley         PetscInt     Nb, Nc, q, qc = 0;
19601555c271SMatthew G. Knepley 
19619566063dSJacob Faibussowitsch         PetscCall(PetscArrayzero(grad, coordDim * numComponents));
19629566063dSJacob Faibussowitsch         PetscCall(DMGetField(dm, field, NULL, &obj));
19639566063dSJacob Faibussowitsch         PetscCall(PetscObjectGetClassId(obj, &id));
19649371c9d4SSatish Balay         if (id == PETSCFE_CLASSID) {
19659371c9d4SSatish Balay           PetscCall(PetscFEGetNumComponents((PetscFE)obj, &Nc));
19669371c9d4SSatish Balay           PetscCall(PetscFEGetDimension((PetscFE)obj, &Nb));
19679371c9d4SSatish Balay         } else if (id == PETSCFV_CLASSID) {
19689371c9d4SSatish Balay           PetscCall(PetscFVGetNumComponents((PetscFV)obj, &Nc));
19699371c9d4SSatish Balay           Nb = 1;
19709371c9d4SSatish Balay         } else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, field);
19711555c271SMatthew G. Knepley         for (q = 0; q < Nq; ++q) {
19722a4e142eSMatthew G. Knepley           PetscFEGeom qgeom;
19732a4e142eSMatthew G. Knepley 
19742a4e142eSMatthew G. Knepley           qgeom.dimEmbed = fegeom.dimEmbed;
19752a4e142eSMatthew G. Knepley           qgeom.J        = &fegeom.J[q * coordDim * coordDim];
19762a4e142eSMatthew G. Knepley           qgeom.invJ     = &fegeom.invJ[q * coordDim * coordDim];
19772a4e142eSMatthew G. Knepley           qgeom.detJ     = &fegeom.detJ[q];
197863a3b9bcSJacob Faibussowitsch           PetscCheck(fegeom.detJ[q] > 0.0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Invalid determinant %g for element %" PetscInt_FMT ", quadrature points %" PetscInt_FMT, (double)fegeom.detJ[q], cell, q);
19799566063dSJacob Faibussowitsch           if (id == PETSCFE_CLASSID) PetscCall(PetscFEInterpolateGradient_Static((PetscFE)obj, 1, &x[fieldOffset], &qgeom, q, interpolant));
198063a3b9bcSJacob Faibussowitsch           else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, field);
19811555c271SMatthew G. Knepley           for (fc = 0; fc < Nc; ++fc) {
198253d2db2dSJoe Wallwork             const PetscReal wt = quadWeights[q * qNc + qc];
19831555c271SMatthew G. Knepley 
19844bee2e38SMatthew G. Knepley             for (d = 0; d < coordDim; ++d) grad[fc * coordDim + d] += interpolant[fc * dim + d] * wt * fegeom.detJ[q];
19851555c271SMatthew G. Knepley           }
19864bee2e38SMatthew G. Knepley           vol += quadWeights[q * qNc] * fegeom.detJ[q];
19871555c271SMatthew G. Knepley         }
19881555c271SMatthew G. Knepley         fieldOffset += Nb;
19891555c271SMatthew G. Knepley         qc += Nc;
19901555c271SMatthew G. Knepley       }
19919566063dSJacob Faibussowitsch       PetscCall(DMPlexVecRestoreClosure(dm, NULL, locX, cell, NULL, &x));
1992f8527842SMatthew G. Knepley       for (fc = 0; fc < numComponents; ++fc) {
1993ad540459SPierre Jolivet         for (d = 0; d < coordDim; ++d) gradsum[fc * coordDim + d] += grad[fc * coordDim + d];
1994f8527842SMatthew G. Knepley       }
1995f8527842SMatthew G. Knepley       volsum += vol;
1996db1066baSMatthew G. Knepley       if (debug) {
19979566063dSJacob Faibussowitsch         PetscCall(PetscPrintf(PETSC_COMM_SELF, "Vertex %" PetscInt_FMT " Cell %" PetscInt_FMT " gradient: [", v, cell));
19981555c271SMatthew G. Knepley         for (fc = 0; fc < numComponents; ++fc) {
19991555c271SMatthew G. Knepley           for (d = 0; d < coordDim; ++d) {
20009566063dSJacob Faibussowitsch             if (fc || d > 0) PetscCall(PetscPrintf(PETSC_COMM_SELF, ", "));
20019566063dSJacob Faibussowitsch             PetscCall(PetscPrintf(PETSC_COMM_SELF, "%g", (double)PetscRealPart(grad[fc * coordDim + d])));
20021555c271SMatthew G. Knepley           }
20031555c271SMatthew G. Knepley         }
20049566063dSJacob Faibussowitsch         PetscCall(PetscPrintf(PETSC_COMM_SELF, "]\n"));
2005db1066baSMatthew G. Knepley       }
20061555c271SMatthew G. Knepley     }
20071555c271SMatthew G. Knepley     for (fc = 0; fc < numComponents; ++fc) {
20081555c271SMatthew G. Knepley       for (d = 0; d < coordDim; ++d) gradsum[fc * coordDim + d] /= volsum;
20091555c271SMatthew G. Knepley     }
20109566063dSJacob Faibussowitsch     PetscCall(DMPlexRestoreTransitiveClosure(dm, v, PETSC_FALSE, &starSize, &star));
20119566063dSJacob Faibussowitsch     PetscCall(DMPlexVecSetClosure(dmC, NULL, locC, v, gradsum, INSERT_VALUES));
20121555c271SMatthew G. Knepley   }
20139566063dSJacob Faibussowitsch   PetscCall(PetscFree6(gradsum, interpolant, coords, fegeom.detJ, fegeom.J, fegeom.invJ));
20143ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
20151555c271SMatthew G. Knepley }
20161555c271SMatthew G. Knepley 
2017d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexComputeIntegral_Internal(DM dm, Vec X, PetscInt cStart, PetscInt cEnd, PetscScalar *cintegral, void *user)
2018d71ae5a4SJacob Faibussowitsch {
2019338f77d5SMatthew G. Knepley   DM           dmAux = NULL;
202061aaff12SToby Isaac   PetscDS      prob, probAux = NULL;
202173d901b8SMatthew G. Knepley   PetscSection section, sectionAux;
2022338f77d5SMatthew G. Knepley   Vec          locX, locA;
2023c330f8ffSToby Isaac   PetscInt     dim, numCells = cEnd - cStart, c, f;
2024c330f8ffSToby Isaac   PetscBool    useFVM = PETSC_FALSE;
2025338f77d5SMatthew G. Knepley   /* DS */
2026338f77d5SMatthew G. Knepley   PetscInt           Nf, totDim, *uOff, *uOff_x, numConstants;
2027338f77d5SMatthew G. Knepley   PetscInt           NfAux, totDimAux, *aOff;
2028338f77d5SMatthew G. Knepley   PetscScalar       *u, *a;
2029338f77d5SMatthew G. Knepley   const PetscScalar *constants;
2030338f77d5SMatthew G. Knepley   /* Geometry */
2031c330f8ffSToby Isaac   PetscFEGeom       *cgeomFEM;
2032338f77d5SMatthew G. Knepley   DM                 dmGrad;
2033c330f8ffSToby Isaac   PetscQuadrature    affineQuad      = NULL;
2034338f77d5SMatthew G. Knepley   Vec                cellGeometryFVM = NULL, faceGeometryFVM = NULL, locGrad = NULL;
2035b5a3613cSMatthew G. Knepley   PetscFVCellGeom   *cgeomFVM;
2036338f77d5SMatthew G. Knepley   const PetscScalar *lgrad;
2037b7260050SToby Isaac   PetscInt           maxDegree;
2038c330f8ffSToby Isaac   DMField            coordField;
2039c330f8ffSToby Isaac   IS                 cellIS;
204073d901b8SMatthew G. Knepley 
204173d901b8SMatthew G. Knepley   PetscFunctionBegin;
20429566063dSJacob Faibussowitsch   PetscCall(DMGetDS(dm, &prob));
20439566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dm, &dim));
20449566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dm, &section));
20459566063dSJacob Faibussowitsch   PetscCall(DMGetNumFields(dm, &Nf));
2046338f77d5SMatthew G. Knepley   /* Determine which discretizations we have */
2047b5a3613cSMatthew G. Knepley   for (f = 0; f < Nf; ++f) {
2048b5a3613cSMatthew G. Knepley     PetscObject  obj;
2049b5a3613cSMatthew G. Knepley     PetscClassId id;
2050b5a3613cSMatthew G. Knepley 
20519566063dSJacob Faibussowitsch     PetscCall(PetscDSGetDiscretization(prob, f, &obj));
20529566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetClassId(obj, &id));
2053338f77d5SMatthew G. Knepley     if (id == PETSCFV_CLASSID) useFVM = PETSC_TRUE;
2054338f77d5SMatthew G. Knepley   }
2055338f77d5SMatthew G. Knepley   /* Get local solution with boundary values */
20569566063dSJacob Faibussowitsch   PetscCall(DMGetLocalVector(dm, &locX));
20579566063dSJacob Faibussowitsch   PetscCall(DMPlexInsertBoundaryValues(dm, PETSC_TRUE, locX, 0.0, NULL, NULL, NULL));
20589566063dSJacob Faibussowitsch   PetscCall(DMGlobalToLocalBegin(dm, X, INSERT_VALUES, locX));
20599566063dSJacob Faibussowitsch   PetscCall(DMGlobalToLocalEnd(dm, X, INSERT_VALUES, locX));
2060338f77d5SMatthew G. Knepley   /* Read DS information */
20619566063dSJacob Faibussowitsch   PetscCall(PetscDSGetTotalDimension(prob, &totDim));
20629566063dSJacob Faibussowitsch   PetscCall(PetscDSGetComponentOffsets(prob, &uOff));
20639566063dSJacob Faibussowitsch   PetscCall(PetscDSGetComponentDerivativeOffsets(prob, &uOff_x));
20649566063dSJacob Faibussowitsch   PetscCall(ISCreateStride(PETSC_COMM_SELF, numCells, cStart, 1, &cellIS));
20659566063dSJacob Faibussowitsch   PetscCall(PetscDSGetConstants(prob, &numConstants, &constants));
2066338f77d5SMatthew G. Knepley   /* Read Auxiliary DS information */
20679566063dSJacob Faibussowitsch   PetscCall(DMGetAuxiliaryVec(dm, NULL, 0, 0, &locA));
20689a2a23afSMatthew G. Knepley   if (locA) {
20699566063dSJacob Faibussowitsch     PetscCall(VecGetDM(locA, &dmAux));
20709566063dSJacob Faibussowitsch     PetscCall(DMGetDS(dmAux, &probAux));
20719566063dSJacob Faibussowitsch     PetscCall(PetscDSGetNumFields(probAux, &NfAux));
20729566063dSJacob Faibussowitsch     PetscCall(DMGetLocalSection(dmAux, &sectionAux));
20739566063dSJacob Faibussowitsch     PetscCall(PetscDSGetTotalDimension(probAux, &totDimAux));
20749566063dSJacob Faibussowitsch     PetscCall(PetscDSGetComponentOffsets(probAux, &aOff));
2075338f77d5SMatthew G. Knepley   }
2076338f77d5SMatthew G. Knepley   /* Allocate data  arrays */
20779566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(numCells * totDim, &u));
20789566063dSJacob Faibussowitsch   if (dmAux) PetscCall(PetscMalloc1(numCells * totDimAux, &a));
2079338f77d5SMatthew G. Knepley   /* Read out geometry */
20809566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateField(dm, &coordField));
20819566063dSJacob Faibussowitsch   PetscCall(DMFieldGetDegree(coordField, cellIS, NULL, &maxDegree));
2082b7260050SToby Isaac   if (maxDegree <= 1) {
20839566063dSJacob Faibussowitsch     PetscCall(DMFieldCreateDefaultQuadrature(coordField, cellIS, &affineQuad));
208448a46eb9SPierre Jolivet     if (affineQuad) PetscCall(DMFieldCreateFEGeom(coordField, cellIS, affineQuad, PETSC_FALSE, &cgeomFEM));
2085b5a3613cSMatthew G. Knepley   }
2086b5a3613cSMatthew G. Knepley   if (useFVM) {
2087338f77d5SMatthew G. Knepley     PetscFV   fv = NULL;
2088b5a3613cSMatthew G. Knepley     Vec       grad;
2089b5a3613cSMatthew G. Knepley     PetscInt  fStart, fEnd;
2090b5a3613cSMatthew G. Knepley     PetscBool compGrad;
2091b5a3613cSMatthew G. Knepley 
2092338f77d5SMatthew G. Knepley     for (f = 0; f < Nf; ++f) {
2093338f77d5SMatthew G. Knepley       PetscObject  obj;
2094338f77d5SMatthew G. Knepley       PetscClassId id;
2095338f77d5SMatthew G. Knepley 
20969566063dSJacob Faibussowitsch       PetscCall(PetscDSGetDiscretization(prob, f, &obj));
20979566063dSJacob Faibussowitsch       PetscCall(PetscObjectGetClassId(obj, &id));
20989371c9d4SSatish Balay       if (id == PETSCFV_CLASSID) {
20999371c9d4SSatish Balay         fv = (PetscFV)obj;
21009371c9d4SSatish Balay         break;
21019371c9d4SSatish Balay       }
2102338f77d5SMatthew G. Knepley     }
21039566063dSJacob Faibussowitsch     PetscCall(PetscFVGetComputeGradients(fv, &compGrad));
21049566063dSJacob Faibussowitsch     PetscCall(PetscFVSetComputeGradients(fv, PETSC_TRUE));
21059566063dSJacob Faibussowitsch     PetscCall(DMPlexComputeGeometryFVM(dm, &cellGeometryFVM, &faceGeometryFVM));
21069566063dSJacob Faibussowitsch     PetscCall(DMPlexComputeGradientFVM(dm, fv, faceGeometryFVM, cellGeometryFVM, &dmGrad));
21079566063dSJacob Faibussowitsch     PetscCall(PetscFVSetComputeGradients(fv, compGrad));
21089566063dSJacob Faibussowitsch     PetscCall(VecGetArrayRead(cellGeometryFVM, (const PetscScalar **)&cgeomFVM));
2109b5a3613cSMatthew G. Knepley     /* Reconstruct and limit cell gradients */
21109566063dSJacob Faibussowitsch     PetscCall(DMPlexGetHeightStratum(dm, 1, &fStart, &fEnd));
21119566063dSJacob Faibussowitsch     PetscCall(DMGetGlobalVector(dmGrad, &grad));
21129566063dSJacob Faibussowitsch     PetscCall(DMPlexReconstructGradients_Internal(dm, fv, fStart, fEnd, faceGeometryFVM, cellGeometryFVM, locX, grad));
2113b5a3613cSMatthew G. Knepley     /* Communicate gradient values */
21149566063dSJacob Faibussowitsch     PetscCall(DMGetLocalVector(dmGrad, &locGrad));
21159566063dSJacob Faibussowitsch     PetscCall(DMGlobalToLocalBegin(dmGrad, grad, INSERT_VALUES, locGrad));
21169566063dSJacob Faibussowitsch     PetscCall(DMGlobalToLocalEnd(dmGrad, grad, INSERT_VALUES, locGrad));
21179566063dSJacob Faibussowitsch     PetscCall(DMRestoreGlobalVector(dmGrad, &grad));
2118b5a3613cSMatthew G. Knepley     /* Handle non-essential (e.g. outflow) boundary values */
21199566063dSJacob Faibussowitsch     PetscCall(DMPlexInsertBoundaryValues(dm, PETSC_FALSE, locX, 0.0, faceGeometryFVM, cellGeometryFVM, locGrad));
21209566063dSJacob Faibussowitsch     PetscCall(VecGetArrayRead(locGrad, &lgrad));
2121b5a3613cSMatthew G. Knepley   }
2122338f77d5SMatthew G. Knepley   /* Read out data from inputs */
212373d901b8SMatthew G. Knepley   for (c = cStart; c < cEnd; ++c) {
212473d901b8SMatthew G. Knepley     PetscScalar *x = NULL;
212573d901b8SMatthew G. Knepley     PetscInt     i;
212673d901b8SMatthew G. Knepley 
21279566063dSJacob Faibussowitsch     PetscCall(DMPlexVecGetClosure(dm, section, locX, c, NULL, &x));
21280f2d7e86SMatthew G. Knepley     for (i = 0; i < totDim; ++i) u[c * totDim + i] = x[i];
21299566063dSJacob Faibussowitsch     PetscCall(DMPlexVecRestoreClosure(dm, section, locX, c, NULL, &x));
213073d901b8SMatthew G. Knepley     if (dmAux) {
21319566063dSJacob Faibussowitsch       PetscCall(DMPlexVecGetClosure(dmAux, sectionAux, locA, c, NULL, &x));
21320f2d7e86SMatthew G. Knepley       for (i = 0; i < totDimAux; ++i) a[c * totDimAux + i] = x[i];
21339566063dSJacob Faibussowitsch       PetscCall(DMPlexVecRestoreClosure(dmAux, sectionAux, locA, c, NULL, &x));
213473d901b8SMatthew G. Knepley     }
213573d901b8SMatthew G. Knepley   }
2136338f77d5SMatthew G. Knepley   /* Do integration for each field */
213773d901b8SMatthew G. Knepley   for (f = 0; f < Nf; ++f) {
2138c1f031eeSMatthew G. Knepley     PetscObject  obj;
2139c1f031eeSMatthew G. Knepley     PetscClassId id;
2140c1f031eeSMatthew G. Knepley     PetscInt     numChunks, numBatches, batchSize, numBlocks, blockSize, Ne, Nr, offset;
214173d901b8SMatthew G. Knepley 
21429566063dSJacob Faibussowitsch     PetscCall(PetscDSGetDiscretization(prob, f, &obj));
21439566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetClassId(obj, &id));
2144c1f031eeSMatthew G. Knepley     if (id == PETSCFE_CLASSID) {
2145c1f031eeSMatthew G. Knepley       PetscFE         fe = (PetscFE)obj;
2146c1f031eeSMatthew G. Knepley       PetscQuadrature q;
2147c330f8ffSToby Isaac       PetscFEGeom    *chunkGeom = NULL;
2148c1f031eeSMatthew G. Knepley       PetscInt        Nq, Nb;
2149c1f031eeSMatthew G. Knepley 
21509566063dSJacob Faibussowitsch       PetscCall(PetscFEGetTileSizes(fe, NULL, &numBlocks, NULL, &numBatches));
21519566063dSJacob Faibussowitsch       PetscCall(PetscFEGetQuadrature(fe, &q));
21529566063dSJacob Faibussowitsch       PetscCall(PetscQuadratureGetData(q, NULL, NULL, &Nq, NULL, NULL));
21539566063dSJacob Faibussowitsch       PetscCall(PetscFEGetDimension(fe, &Nb));
2154c1f031eeSMatthew G. Knepley       blockSize = Nb * Nq;
215573d901b8SMatthew G. Knepley       batchSize = numBlocks * blockSize;
21569566063dSJacob Faibussowitsch       PetscCall(PetscFESetTileSizes(fe, blockSize, numBlocks, batchSize, numBatches));
215773d901b8SMatthew G. Knepley       numChunks = numCells / (numBatches * batchSize);
215873d901b8SMatthew G. Knepley       Ne        = numChunks * numBatches * batchSize;
215973d901b8SMatthew G. Knepley       Nr        = numCells % (numBatches * batchSize);
216073d901b8SMatthew G. Knepley       offset    = numCells - Nr;
216148a46eb9SPierre Jolivet       if (!affineQuad) PetscCall(DMFieldCreateFEGeom(coordField, cellIS, q, PETSC_FALSE, &cgeomFEM));
21629566063dSJacob Faibussowitsch       PetscCall(PetscFEGeomGetChunk(cgeomFEM, 0, offset, &chunkGeom));
21639566063dSJacob Faibussowitsch       PetscCall(PetscFEIntegrate(prob, f, Ne, chunkGeom, u, probAux, a, cintegral));
21649566063dSJacob Faibussowitsch       PetscCall(PetscFEGeomGetChunk(cgeomFEM, offset, numCells, &chunkGeom));
21659566063dSJacob Faibussowitsch       PetscCall(PetscFEIntegrate(prob, f, Nr, chunkGeom, &u[offset * totDim], probAux, &a[offset * totDimAux], &cintegral[offset * Nf]));
21669566063dSJacob Faibussowitsch       PetscCall(PetscFEGeomRestoreChunk(cgeomFEM, offset, numCells, &chunkGeom));
216748a46eb9SPierre Jolivet       if (!affineQuad) PetscCall(PetscFEGeomDestroy(&cgeomFEM));
2168c1f031eeSMatthew G. Knepley     } else if (id == PETSCFV_CLASSID) {
2169c1f031eeSMatthew G. Knepley       PetscInt       foff;
2170420e96edSMatthew G. Knepley       PetscPointFunc obj_func;
2171b69edc29SMatthew G. Knepley       PetscScalar    lint;
2172c1f031eeSMatthew G. Knepley 
21739566063dSJacob Faibussowitsch       PetscCall(PetscDSGetObjective(prob, f, &obj_func));
21749566063dSJacob Faibussowitsch       PetscCall(PetscDSGetFieldOffset(prob, f, &foff));
2175c1f031eeSMatthew G. Knepley       if (obj_func) {
2176c1f031eeSMatthew G. Knepley         for (c = 0; c < numCells; ++c) {
2177b5a3613cSMatthew G. Knepley           PetscScalar *u_x;
2178b5a3613cSMatthew G. Knepley 
21799566063dSJacob Faibussowitsch           PetscCall(DMPlexPointLocalRead(dmGrad, c, lgrad, &u_x));
2180338f77d5SMatthew G. Knepley           obj_func(dim, Nf, NfAux, uOff, uOff_x, &u[totDim * c + foff], NULL, u_x, aOff, NULL, &a[totDimAux * c], NULL, NULL, 0.0, cgeomFVM[c].centroid, numConstants, constants, &lint);
2181338f77d5SMatthew G. Knepley           cintegral[c * Nf + f] += PetscRealPart(lint) * cgeomFVM[c].volume;
218273d901b8SMatthew G. Knepley         }
2183c1f031eeSMatthew G. Knepley       }
218463a3b9bcSJacob Faibussowitsch     } else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, f);
2185c1f031eeSMatthew G. Knepley   }
2186338f77d5SMatthew G. Knepley   /* Cleanup data arrays */
2187b5a3613cSMatthew G. Knepley   if (useFVM) {
21889566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayRead(locGrad, &lgrad));
21899566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayRead(cellGeometryFVM, (const PetscScalar **)&cgeomFVM));
21909566063dSJacob Faibussowitsch     PetscCall(DMRestoreLocalVector(dmGrad, &locGrad));
21919566063dSJacob Faibussowitsch     PetscCall(VecDestroy(&faceGeometryFVM));
21929566063dSJacob Faibussowitsch     PetscCall(VecDestroy(&cellGeometryFVM));
21939566063dSJacob Faibussowitsch     PetscCall(DMDestroy(&dmGrad));
2194b5a3613cSMatthew G. Knepley   }
21959566063dSJacob Faibussowitsch   if (dmAux) PetscCall(PetscFree(a));
21969566063dSJacob Faibussowitsch   PetscCall(PetscFree(u));
2197338f77d5SMatthew G. Knepley   /* Cleanup */
219848a46eb9SPierre Jolivet   if (affineQuad) PetscCall(PetscFEGeomDestroy(&cgeomFEM));
21999566063dSJacob Faibussowitsch   PetscCall(PetscQuadratureDestroy(&affineQuad));
22009566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&cellIS));
22019566063dSJacob Faibussowitsch   PetscCall(DMRestoreLocalVector(dm, &locX));
22023ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2203338f77d5SMatthew G. Knepley }
2204338f77d5SMatthew G. Knepley 
2205338f77d5SMatthew G. Knepley /*@
2206338f77d5SMatthew G. Knepley   DMPlexComputeIntegralFEM - Form the integral over the domain from the global input X using pointwise functions specified by the user
2207338f77d5SMatthew G. Knepley 
2208338f77d5SMatthew G. Knepley   Input Parameters:
2209338f77d5SMatthew G. Knepley + dm - The mesh
2210338f77d5SMatthew G. Knepley . X  - Global input vector
2211338f77d5SMatthew G. Knepley - user - The user context
2212338f77d5SMatthew G. Knepley 
2213338f77d5SMatthew G. Knepley   Output Parameter:
2214338f77d5SMatthew G. Knepley . integral - Integral for each field
2215338f77d5SMatthew G. Knepley 
2216338f77d5SMatthew G. Knepley   Level: developer
2217338f77d5SMatthew G. Knepley 
2218a1cb98faSBarry Smith .seealso: [](chapter_unstructured), `DM`, `DMPLEX`, `DMPlexSNESComputeResidualFEM()`
2219338f77d5SMatthew G. Knepley @*/
2220d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeIntegralFEM(DM dm, Vec X, PetscScalar *integral, void *user)
2221d71ae5a4SJacob Faibussowitsch {
2222338f77d5SMatthew G. Knepley   DM_Plex     *mesh = (DM_Plex *)dm->data;
2223b8feb594SMatthew G. Knepley   PetscScalar *cintegral, *lintegral;
2224412e9a14SMatthew G. Knepley   PetscInt     Nf, f, cellHeight, cStart, cEnd, cell;
2225338f77d5SMatthew G. Knepley 
2226338f77d5SMatthew G. Knepley   PetscFunctionBegin;
2227338f77d5SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
2228338f77d5SMatthew G. Knepley   PetscValidHeaderSpecific(X, VEC_CLASSID, 2);
2229dadcf809SJacob Faibussowitsch   PetscValidScalarPointer(integral, 3);
22309566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(DMPLEX_IntegralFEM, dm, 0, 0, 0));
22319566063dSJacob Faibussowitsch   PetscCall(DMGetNumFields(dm, &Nf));
22329566063dSJacob Faibussowitsch   PetscCall(DMPlexGetVTKCellHeight(dm, &cellHeight));
22339566063dSJacob Faibussowitsch   PetscCall(DMPlexGetSimplexOrBoxCells(dm, cellHeight, &cStart, &cEnd));
2234338f77d5SMatthew G. Knepley   /* TODO Introduce a loop over large chunks (right now this is a single chunk) */
22359566063dSJacob Faibussowitsch   PetscCall(PetscCalloc2(Nf, &lintegral, (cEnd - cStart) * Nf, &cintegral));
22369566063dSJacob Faibussowitsch   PetscCall(DMPlexComputeIntegral_Internal(dm, X, cStart, cEnd, cintegral, user));
2237338f77d5SMatthew G. Knepley   /* Sum up values */
2238338f77d5SMatthew G. Knepley   for (cell = cStart; cell < cEnd; ++cell) {
2239338f77d5SMatthew G. Knepley     const PetscInt c = cell - cStart;
2240338f77d5SMatthew G. Knepley 
22419566063dSJacob Faibussowitsch     if (mesh->printFEM > 1) PetscCall(DMPrintCellVector(cell, "Cell Integral", Nf, &cintegral[c * Nf]));
2242b8feb594SMatthew G. Knepley     for (f = 0; f < Nf; ++f) lintegral[f] += cintegral[c * Nf + f];
2243338f77d5SMatthew G. Knepley   }
22441c2dc1cbSBarry Smith   PetscCall(MPIU_Allreduce(lintegral, integral, Nf, MPIU_SCALAR, MPIU_SUM, PetscObjectComm((PetscObject)dm)));
224573d901b8SMatthew G. Knepley   if (mesh->printFEM) {
22469566063dSJacob Faibussowitsch     PetscCall(PetscPrintf(PetscObjectComm((PetscObject)dm), "Integral:"));
22479566063dSJacob Faibussowitsch     for (f = 0; f < Nf; ++f) PetscCall(PetscPrintf(PetscObjectComm((PetscObject)dm), " %g", (double)PetscRealPart(integral[f])));
22489566063dSJacob Faibussowitsch     PetscCall(PetscPrintf(PetscObjectComm((PetscObject)dm), "\n"));
224973d901b8SMatthew G. Knepley   }
22509566063dSJacob Faibussowitsch   PetscCall(PetscFree2(lintegral, cintegral));
22519566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(DMPLEX_IntegralFEM, dm, 0, 0, 0));
22523ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2253338f77d5SMatthew G. Knepley }
2254338f77d5SMatthew G. Knepley 
2255338f77d5SMatthew G. Knepley /*@
2256338f77d5SMatthew G. Knepley   DMPlexComputeCellwiseIntegralFEM - Form the vector of cellwise integrals F from the global input X using pointwise functions specified by the user
2257338f77d5SMatthew G. Knepley 
2258338f77d5SMatthew G. Knepley   Input Parameters:
2259338f77d5SMatthew G. Knepley + dm - The mesh
2260338f77d5SMatthew G. Knepley . X  - Global input vector
2261338f77d5SMatthew G. Knepley - user - The user context
2262338f77d5SMatthew G. Knepley 
2263338f77d5SMatthew G. Knepley   Output Parameter:
2264338f77d5SMatthew G. Knepley . integral - Cellwise integrals for each field
2265338f77d5SMatthew G. Knepley 
2266338f77d5SMatthew G. Knepley   Level: developer
2267338f77d5SMatthew G. Knepley 
2268a1cb98faSBarry Smith .seealso: [](chapter_unstructured), `DM`, `DMPLEX`, `DMPlexSNESComputeResidualFEM()`
2269338f77d5SMatthew G. Knepley @*/
2270d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeCellwiseIntegralFEM(DM dm, Vec X, Vec F, void *user)
2271d71ae5a4SJacob Faibussowitsch {
2272338f77d5SMatthew G. Knepley   DM_Plex     *mesh = (DM_Plex *)dm->data;
2273338f77d5SMatthew G. Knepley   DM           dmF;
2274338f77d5SMatthew G. Knepley   PetscSection sectionF;
2275338f77d5SMatthew G. Knepley   PetscScalar *cintegral, *af;
2276412e9a14SMatthew G. Knepley   PetscInt     Nf, f, cellHeight, cStart, cEnd, cell;
2277338f77d5SMatthew G. Knepley 
2278338f77d5SMatthew G. Knepley   PetscFunctionBegin;
2279338f77d5SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
2280338f77d5SMatthew G. Knepley   PetscValidHeaderSpecific(X, VEC_CLASSID, 2);
2281338f77d5SMatthew G. Knepley   PetscValidHeaderSpecific(F, VEC_CLASSID, 3);
22829566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(DMPLEX_IntegralFEM, dm, 0, 0, 0));
22839566063dSJacob Faibussowitsch   PetscCall(DMGetNumFields(dm, &Nf));
22849566063dSJacob Faibussowitsch   PetscCall(DMPlexGetVTKCellHeight(dm, &cellHeight));
22859566063dSJacob Faibussowitsch   PetscCall(DMPlexGetSimplexOrBoxCells(dm, cellHeight, &cStart, &cEnd));
2286338f77d5SMatthew G. Knepley   /* TODO Introduce a loop over large chunks (right now this is a single chunk) */
22879566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1((cEnd - cStart) * Nf, &cintegral));
22889566063dSJacob Faibussowitsch   PetscCall(DMPlexComputeIntegral_Internal(dm, X, cStart, cEnd, cintegral, user));
2289338f77d5SMatthew G. Knepley   /* Put values in F*/
22909566063dSJacob Faibussowitsch   PetscCall(VecGetDM(F, &dmF));
22919566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dmF, &sectionF));
22929566063dSJacob Faibussowitsch   PetscCall(VecGetArray(F, &af));
2293338f77d5SMatthew G. Knepley   for (cell = cStart; cell < cEnd; ++cell) {
2294338f77d5SMatthew G. Knepley     const PetscInt c = cell - cStart;
2295338f77d5SMatthew G. Knepley     PetscInt       dof, off;
2296338f77d5SMatthew G. Knepley 
22979566063dSJacob Faibussowitsch     if (mesh->printFEM > 1) PetscCall(DMPrintCellVector(cell, "Cell Integral", Nf, &cintegral[c * Nf]));
22989566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetDof(sectionF, cell, &dof));
22999566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetOffset(sectionF, cell, &off));
230063a3b9bcSJacob Faibussowitsch     PetscCheck(dof == Nf, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "The number of cell dofs %" PetscInt_FMT " != %" PetscInt_FMT, dof, Nf);
2301338f77d5SMatthew G. Knepley     for (f = 0; f < Nf; ++f) af[off + f] = cintegral[c * Nf + f];
2302338f77d5SMatthew G. Knepley   }
23039566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(F, &af));
23049566063dSJacob Faibussowitsch   PetscCall(PetscFree(cintegral));
23059566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(DMPLEX_IntegralFEM, dm, 0, 0, 0));
23063ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
230773d901b8SMatthew G. Knepley }
230873d901b8SMatthew G. Knepley 
2309d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexComputeBdIntegral_Internal(DM dm, Vec locX, IS pointIS, void (*func)(PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], PetscReal, const PetscReal[], const PetscReal[], PetscInt, const PetscScalar[], PetscScalar[]), PetscScalar *fintegral, void *user)
2310d71ae5a4SJacob Faibussowitsch {
23119b6f715bSMatthew G. Knepley   DM                 plex = NULL, plexA = NULL;
2312a6e0b375SMatthew G. Knepley   DMEnclosureType    encAux;
23139b6f715bSMatthew G. Knepley   PetscDS            prob, probAux       = NULL;
23149b6f715bSMatthew G. Knepley   PetscSection       section, sectionAux = NULL;
23159b6f715bSMatthew G. Knepley   Vec                locA = NULL;
23169b6f715bSMatthew G. Knepley   DMField            coordField;
23179b6f715bSMatthew G. Knepley   PetscInt           Nf, totDim, *uOff, *uOff_x;
23189b6f715bSMatthew G. Knepley   PetscInt           NfAux = 0, totDimAux = 0, *aOff = NULL;
23199b6f715bSMatthew G. Knepley   PetscScalar       *u, *a = NULL;
232064c72086SMatthew G. Knepley   const PetscScalar *constants;
23219b6f715bSMatthew G. Knepley   PetscInt           numConstants, f;
232264c72086SMatthew G. Knepley 
232364c72086SMatthew G. Knepley   PetscFunctionBegin;
23249566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateField(dm, &coordField));
23259566063dSJacob Faibussowitsch   PetscCall(DMConvert(dm, DMPLEX, &plex));
23269566063dSJacob Faibussowitsch   PetscCall(DMGetDS(dm, &prob));
23279566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dm, &section));
23289566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetNumFields(section, &Nf));
232964c72086SMatthew G. Knepley   /* Determine which discretizations we have */
23309b6f715bSMatthew G. Knepley   for (f = 0; f < Nf; ++f) {
233164c72086SMatthew G. Knepley     PetscObject  obj;
233264c72086SMatthew G. Knepley     PetscClassId id;
233364c72086SMatthew G. Knepley 
23349566063dSJacob Faibussowitsch     PetscCall(PetscDSGetDiscretization(prob, f, &obj));
23359566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetClassId(obj, &id));
233663a3b9bcSJacob Faibussowitsch     PetscCheck(id != PETSCFV_CLASSID, PetscObjectComm((PetscObject)dm), PETSC_ERR_SUP, "Not supported for FVM (field %" PetscInt_FMT ")", f);
233764c72086SMatthew G. Knepley   }
233864c72086SMatthew G. Knepley   /* Read DS information */
23399566063dSJacob Faibussowitsch   PetscCall(PetscDSGetTotalDimension(prob, &totDim));
23409566063dSJacob Faibussowitsch   PetscCall(PetscDSGetComponentOffsets(prob, &uOff));
23419566063dSJacob Faibussowitsch   PetscCall(PetscDSGetComponentDerivativeOffsets(prob, &uOff_x));
23429566063dSJacob Faibussowitsch   PetscCall(PetscDSGetConstants(prob, &numConstants, &constants));
234364c72086SMatthew G. Knepley   /* Read Auxiliary DS information */
23449566063dSJacob Faibussowitsch   PetscCall(DMGetAuxiliaryVec(dm, NULL, 0, 0, &locA));
23459b6f715bSMatthew G. Knepley   if (locA) {
23469b6f715bSMatthew G. Knepley     DM dmAux;
23479b6f715bSMatthew G. Knepley 
23489566063dSJacob Faibussowitsch     PetscCall(VecGetDM(locA, &dmAux));
23499566063dSJacob Faibussowitsch     PetscCall(DMGetEnclosureRelation(dmAux, dm, &encAux));
23509566063dSJacob Faibussowitsch     PetscCall(DMConvert(dmAux, DMPLEX, &plexA));
23519566063dSJacob Faibussowitsch     PetscCall(DMGetDS(dmAux, &probAux));
23529566063dSJacob Faibussowitsch     PetscCall(PetscDSGetNumFields(probAux, &NfAux));
23539566063dSJacob Faibussowitsch     PetscCall(DMGetLocalSection(dmAux, &sectionAux));
23549566063dSJacob Faibussowitsch     PetscCall(PetscDSGetTotalDimension(probAux, &totDimAux));
23559566063dSJacob Faibussowitsch     PetscCall(PetscDSGetComponentOffsets(probAux, &aOff));
235664c72086SMatthew G. Knepley   }
23579b6f715bSMatthew G. Knepley   /* Integrate over points */
23589b6f715bSMatthew G. Knepley   {
23599b6f715bSMatthew G. Knepley     PetscFEGeom    *fgeom, *chunkGeom = NULL;
2360b7260050SToby Isaac     PetscInt        maxDegree;
23619b6f715bSMatthew G. Knepley     PetscQuadrature qGeom = NULL;
23629b6f715bSMatthew G. Knepley     const PetscInt *points;
23639b6f715bSMatthew G. Knepley     PetscInt        numFaces, face, Nq, field;
23649b6f715bSMatthew G. Knepley     PetscInt        numChunks, chunkSize, chunk, Nr, offset;
236564c72086SMatthew G. Knepley 
23669566063dSJacob Faibussowitsch     PetscCall(ISGetLocalSize(pointIS, &numFaces));
23679566063dSJacob Faibussowitsch     PetscCall(ISGetIndices(pointIS, &points));
23689566063dSJacob Faibussowitsch     PetscCall(PetscCalloc2(numFaces * totDim, &u, locA ? numFaces * totDimAux : 0, &a));
23699566063dSJacob Faibussowitsch     PetscCall(DMFieldGetDegree(coordField, pointIS, NULL, &maxDegree));
237064c72086SMatthew G. Knepley     for (field = 0; field < Nf; ++field) {
237164c72086SMatthew G. Knepley       PetscFE fe;
237264c72086SMatthew G. Knepley 
23739566063dSJacob Faibussowitsch       PetscCall(PetscDSGetDiscretization(prob, field, (PetscObject *)&fe));
23749566063dSJacob Faibussowitsch       if (maxDegree <= 1) PetscCall(DMFieldCreateDefaultQuadrature(coordField, pointIS, &qGeom));
23759b6f715bSMatthew G. Knepley       if (!qGeom) {
23769566063dSJacob Faibussowitsch         PetscCall(PetscFEGetFaceQuadrature(fe, &qGeom));
23779566063dSJacob Faibussowitsch         PetscCall(PetscObjectReference((PetscObject)qGeom));
23789b6f715bSMatthew G. Knepley       }
23799566063dSJacob Faibussowitsch       PetscCall(PetscQuadratureGetData(qGeom, NULL, NULL, &Nq, NULL, NULL));
23809566063dSJacob Faibussowitsch       PetscCall(DMPlexGetFEGeom(coordField, pointIS, qGeom, PETSC_TRUE, &fgeom));
23819b6f715bSMatthew G. Knepley       for (face = 0; face < numFaces; ++face) {
2382f15274beSMatthew Knepley         const PetscInt point = points[face], *support;
23839b6f715bSMatthew G. Knepley         PetscScalar   *x     = NULL;
2384f15274beSMatthew Knepley         PetscInt       i;
23859b6f715bSMatthew G. Knepley 
23869566063dSJacob Faibussowitsch         PetscCall(DMPlexGetSupport(dm, point, &support));
23879566063dSJacob Faibussowitsch         PetscCall(DMPlexVecGetClosure(plex, section, locX, support[0], NULL, &x));
23889b6f715bSMatthew G. Knepley         for (i = 0; i < totDim; ++i) u[face * totDim + i] = x[i];
23899566063dSJacob Faibussowitsch         PetscCall(DMPlexVecRestoreClosure(plex, section, locX, support[0], NULL, &x));
23909b6f715bSMatthew G. Knepley         if (locA) {
23919b6f715bSMatthew G. Knepley           PetscInt subp;
23929566063dSJacob Faibussowitsch           PetscCall(DMGetEnclosurePoint(plexA, dm, encAux, support[0], &subp));
23939566063dSJacob Faibussowitsch           PetscCall(DMPlexVecGetClosure(plexA, sectionAux, locA, subp, NULL, &x));
23949b6f715bSMatthew G. Knepley           for (i = 0; i < totDimAux; ++i) a[f * totDimAux + i] = x[i];
23959566063dSJacob Faibussowitsch           PetscCall(DMPlexVecRestoreClosure(plexA, sectionAux, locA, subp, NULL, &x));
23969b6f715bSMatthew G. Knepley         }
23979b6f715bSMatthew G. Knepley       }
23989b6f715bSMatthew G. Knepley       /* Get blocking */
23999b6f715bSMatthew G. Knepley       {
24009b6f715bSMatthew G. Knepley         PetscQuadrature q;
24019b6f715bSMatthew G. Knepley         PetscInt        numBatches, batchSize, numBlocks, blockSize;
24029b6f715bSMatthew G. Knepley         PetscInt        Nq, Nb;
24039b6f715bSMatthew G. Knepley 
24049566063dSJacob Faibussowitsch         PetscCall(PetscFEGetTileSizes(fe, NULL, &numBlocks, NULL, &numBatches));
24059566063dSJacob Faibussowitsch         PetscCall(PetscFEGetQuadrature(fe, &q));
24069566063dSJacob Faibussowitsch         PetscCall(PetscQuadratureGetData(q, NULL, NULL, &Nq, NULL, NULL));
24079566063dSJacob Faibussowitsch         PetscCall(PetscFEGetDimension(fe, &Nb));
240864c72086SMatthew G. Knepley         blockSize = Nb * Nq;
240964c72086SMatthew G. Knepley         batchSize = numBlocks * blockSize;
24109b6f715bSMatthew G. Knepley         chunkSize = numBatches * batchSize;
24119566063dSJacob Faibussowitsch         PetscCall(PetscFESetTileSizes(fe, blockSize, numBlocks, batchSize, numBatches));
24129b6f715bSMatthew G. Knepley         numChunks = numFaces / chunkSize;
24139b6f715bSMatthew G. Knepley         Nr        = numFaces % chunkSize;
241464c72086SMatthew G. Knepley         offset    = numFaces - Nr;
241564c72086SMatthew G. Knepley       }
24169b6f715bSMatthew G. Knepley       /* Do integration for each field */
24179b6f715bSMatthew G. Knepley       for (chunk = 0; chunk < numChunks; ++chunk) {
24189566063dSJacob Faibussowitsch         PetscCall(PetscFEGeomGetChunk(fgeom, chunk * chunkSize, (chunk + 1) * chunkSize, &chunkGeom));
24199566063dSJacob Faibussowitsch         PetscCall(PetscFEIntegrateBd(prob, field, func, chunkSize, chunkGeom, u, probAux, a, fintegral));
24209566063dSJacob Faibussowitsch         PetscCall(PetscFEGeomRestoreChunk(fgeom, 0, offset, &chunkGeom));
242164c72086SMatthew G. Knepley       }
24229566063dSJacob Faibussowitsch       PetscCall(PetscFEGeomGetChunk(fgeom, offset, numFaces, &chunkGeom));
24239566063dSJacob Faibussowitsch       PetscCall(PetscFEIntegrateBd(prob, field, func, Nr, chunkGeom, &u[offset * totDim], probAux, a ? &a[offset * totDimAux] : NULL, &fintegral[offset * Nf]));
24249566063dSJacob Faibussowitsch       PetscCall(PetscFEGeomRestoreChunk(fgeom, offset, numFaces, &chunkGeom));
242564c72086SMatthew G. Knepley       /* Cleanup data arrays */
24269566063dSJacob Faibussowitsch       PetscCall(DMPlexRestoreFEGeom(coordField, pointIS, qGeom, PETSC_TRUE, &fgeom));
24279566063dSJacob Faibussowitsch       PetscCall(PetscQuadratureDestroy(&qGeom));
24289566063dSJacob Faibussowitsch       PetscCall(PetscFree2(u, a));
24299566063dSJacob Faibussowitsch       PetscCall(ISRestoreIndices(pointIS, &points));
243064c72086SMatthew G. Knepley     }
243164c72086SMatthew G. Knepley   }
24329566063dSJacob Faibussowitsch   if (plex) PetscCall(DMDestroy(&plex));
24339566063dSJacob Faibussowitsch   if (plexA) PetscCall(DMDestroy(&plexA));
24343ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
24359b6f715bSMatthew G. Knepley }
24369b6f715bSMatthew G. Knepley 
24379b6f715bSMatthew G. Knepley /*@
24389b6f715bSMatthew G. Knepley   DMPlexComputeBdIntegral - Form the integral over the specified boundary from the global input X using pointwise functions specified by the user
24399b6f715bSMatthew G. Knepley 
24409b6f715bSMatthew G. Knepley   Input Parameters:
24419b6f715bSMatthew G. Knepley + dm      - The mesh
24429b6f715bSMatthew G. Knepley . X       - Global input vector
2443a1cb98faSBarry Smith . label   - The boundary `DMLabel`
2444a1cb98faSBarry Smith . numVals - The number of label values to use, or `PETSC_DETERMINE` for all values
2445a1cb98faSBarry Smith . vals    - The label values to use, or NULL for all values
244667b8a455SSatish Balay . func    - The function to integrate along the boundary
24479b6f715bSMatthew G. Knepley - user    - The user context
24489b6f715bSMatthew G. Knepley 
24499b6f715bSMatthew G. Knepley   Output Parameter:
24509b6f715bSMatthew G. Knepley . integral - Integral for each field
24519b6f715bSMatthew G. Knepley 
24529b6f715bSMatthew G. Knepley   Level: developer
24539b6f715bSMatthew G. Knepley 
2454a1cb98faSBarry Smith .seealso: [](chapter_unstructured), `DM`, `DMPLEX`, `DMPlexComputeIntegralFEM()`, `DMPlexComputeBdResidualFEM()`
24559b6f715bSMatthew G. Knepley @*/
2456d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeBdIntegral(DM dm, Vec X, DMLabel label, PetscInt numVals, const PetscInt vals[], void (*func)(PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], PetscReal, const PetscReal[], const PetscReal[], PetscInt, const PetscScalar[], PetscScalar[]), PetscScalar *integral, void *user)
2457d71ae5a4SJacob Faibussowitsch {
24589b6f715bSMatthew G. Knepley   Vec          locX;
24599b6f715bSMatthew G. Knepley   PetscSection section;
24609b6f715bSMatthew G. Knepley   DMLabel      depthLabel;
24619b6f715bSMatthew G. Knepley   IS           facetIS;
24629b6f715bSMatthew G. Knepley   PetscInt     dim, Nf, f, v;
24639b6f715bSMatthew G. Knepley 
24649b6f715bSMatthew G. Knepley   PetscFunctionBegin;
24659b6f715bSMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
24669b6f715bSMatthew G. Knepley   PetscValidHeaderSpecific(X, VEC_CLASSID, 2);
24679b6f715bSMatthew G. Knepley   PetscValidPointer(label, 3);
2468dadcf809SJacob Faibussowitsch   if (vals) PetscValidIntPointer(vals, 5);
2469dadcf809SJacob Faibussowitsch   PetscValidScalarPointer(integral, 7);
24709566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(DMPLEX_IntegralFEM, dm, 0, 0, 0));
24719566063dSJacob Faibussowitsch   PetscCall(DMPlexGetDepthLabel(dm, &depthLabel));
24729566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dm, &dim));
24739566063dSJacob Faibussowitsch   PetscCall(DMLabelGetStratumIS(depthLabel, dim - 1, &facetIS));
24749566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dm, &section));
24759566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetNumFields(section, &Nf));
24769b6f715bSMatthew G. Knepley   /* Get local solution with boundary values */
24779566063dSJacob Faibussowitsch   PetscCall(DMGetLocalVector(dm, &locX));
24789566063dSJacob Faibussowitsch   PetscCall(DMPlexInsertBoundaryValues(dm, PETSC_TRUE, locX, 0.0, NULL, NULL, NULL));
24799566063dSJacob Faibussowitsch   PetscCall(DMGlobalToLocalBegin(dm, X, INSERT_VALUES, locX));
24809566063dSJacob Faibussowitsch   PetscCall(DMGlobalToLocalEnd(dm, X, INSERT_VALUES, locX));
24819b6f715bSMatthew G. Knepley   /* Loop over label values */
24829566063dSJacob Faibussowitsch   PetscCall(PetscArrayzero(integral, Nf));
24839b6f715bSMatthew G. Knepley   for (v = 0; v < numVals; ++v) {
24849b6f715bSMatthew G. Knepley     IS           pointIS;
24859b6f715bSMatthew G. Knepley     PetscInt     numFaces, face;
24869b6f715bSMatthew G. Knepley     PetscScalar *fintegral;
24879b6f715bSMatthew G. Knepley 
24889566063dSJacob Faibussowitsch     PetscCall(DMLabelGetStratumIS(label, vals[v], &pointIS));
24899b6f715bSMatthew G. Knepley     if (!pointIS) continue; /* No points with that id on this process */
24909b6f715bSMatthew G. Knepley     {
24919b6f715bSMatthew G. Knepley       IS isectIS;
24929b6f715bSMatthew G. Knepley 
24939b6f715bSMatthew G. Knepley       /* TODO: Special cases of ISIntersect where it is quick to check a priori if one is a superset of the other */
24949566063dSJacob Faibussowitsch       PetscCall(ISIntersect_Caching_Internal(facetIS, pointIS, &isectIS));
24959566063dSJacob Faibussowitsch       PetscCall(ISDestroy(&pointIS));
24969b6f715bSMatthew G. Knepley       pointIS = isectIS;
24979b6f715bSMatthew G. Knepley     }
24989566063dSJacob Faibussowitsch     PetscCall(ISGetLocalSize(pointIS, &numFaces));
24999566063dSJacob Faibussowitsch     PetscCall(PetscCalloc1(numFaces * Nf, &fintegral));
25009566063dSJacob Faibussowitsch     PetscCall(DMPlexComputeBdIntegral_Internal(dm, locX, pointIS, func, fintegral, user));
25019b6f715bSMatthew G. Knepley     /* Sum point contributions into integral */
25029371c9d4SSatish Balay     for (f = 0; f < Nf; ++f)
25039371c9d4SSatish Balay       for (face = 0; face < numFaces; ++face) integral[f] += fintegral[face * Nf + f];
25049566063dSJacob Faibussowitsch     PetscCall(PetscFree(fintegral));
25059566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&pointIS));
25069b6f715bSMatthew G. Knepley   }
25079566063dSJacob Faibussowitsch   PetscCall(DMRestoreLocalVector(dm, &locX));
25089566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&facetIS));
25099566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(DMPLEX_IntegralFEM, dm, 0, 0, 0));
25103ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
251164c72086SMatthew G. Knepley }
251264c72086SMatthew G. Knepley 
2513d69c5d34SMatthew G. Knepley /*@
2514a1cb98faSBarry Smith   DMPlexComputeInterpolatorNested - Form the local portion of the interpolation matrix I from the coarse `DM` to a uniformly refined `DM`.
2515d69c5d34SMatthew G. Knepley 
2516d69c5d34SMatthew G. Knepley   Input Parameters:
2517cf51de39SMatthew G. Knepley + dmc  - The coarse mesh
2518cf51de39SMatthew G. Knepley . dmf  - The fine mesh
2519cf51de39SMatthew G. Knepley . isRefined - Flag indicating regular refinement, rather than the same topology
2520d69c5d34SMatthew G. Knepley - user - The user context
2521d69c5d34SMatthew G. Knepley 
2522d69c5d34SMatthew G. Knepley   Output Parameter:
2523934789fcSMatthew G. Knepley . In  - The interpolation matrix
2524d69c5d34SMatthew G. Knepley 
2525d69c5d34SMatthew G. Knepley   Level: developer
2526d69c5d34SMatthew G. Knepley 
2527a1cb98faSBarry Smith .seealso: [](chapter_unstructured), `DM`, `DMPLEX`, `DMPlexComputeInterpolatorGeneral()`, `DMPlexComputeJacobianFEM()`
2528d69c5d34SMatthew G. Knepley @*/
2529d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeInterpolatorNested(DM dmc, DM dmf, PetscBool isRefined, Mat In, void *user)
2530d71ae5a4SJacob Faibussowitsch {
2531d69c5d34SMatthew G. Knepley   DM_Plex     *mesh = (DM_Plex *)dmc->data;
2532d69c5d34SMatthew G. Knepley   const char  *name = "Interpolator";
2533d69c5d34SMatthew G. Knepley   PetscFE     *feRef;
253497c42addSMatthew G. Knepley   PetscFV     *fvRef;
2535d69c5d34SMatthew G. Knepley   PetscSection fsection, fglobalSection;
2536d69c5d34SMatthew G. Knepley   PetscSection csection, cglobalSection;
2537d69c5d34SMatthew G. Knepley   PetscScalar *elemMat;
2538485ad865SMatthew G. Knepley   PetscInt     dim, Nf, f, fieldI, fieldJ, offsetI, offsetJ, cStart, cEnd, c;
25392ea9c922SToby Isaac   PetscInt     cTotDim = 0, rTotDim = 0;
2540d69c5d34SMatthew G. Knepley 
2541d69c5d34SMatthew G. Knepley   PetscFunctionBegin;
25429566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(DMPLEX_InterpolatorFEM, dmc, dmf, 0, 0));
25439566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dmf, &dim));
25449566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dmf, &fsection));
25459566063dSJacob Faibussowitsch   PetscCall(DMGetGlobalSection(dmf, &fglobalSection));
25469566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dmc, &csection));
25479566063dSJacob Faibussowitsch   PetscCall(DMGetGlobalSection(dmc, &cglobalSection));
25489566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetNumFields(fsection, &Nf));
25499566063dSJacob Faibussowitsch   PetscCall(DMPlexGetSimplexOrBoxCells(dmc, 0, &cStart, &cEnd));
25509566063dSJacob Faibussowitsch   PetscCall(PetscCalloc2(Nf, &feRef, Nf, &fvRef));
2551d69c5d34SMatthew G. Knepley   for (f = 0; f < Nf; ++f) {
25522ea9c922SToby Isaac     PetscObject  obj, objc;
25532ea9c922SToby Isaac     PetscClassId id, idc;
25542ea9c922SToby Isaac     PetscInt     rNb = 0, Nc = 0, cNb = 0;
2555d69c5d34SMatthew G. Knepley 
25569566063dSJacob Faibussowitsch     PetscCall(DMGetField(dmf, f, NULL, &obj));
25579566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetClassId(obj, &id));
255897c42addSMatthew G. Knepley     if (id == PETSCFE_CLASSID) {
255997c42addSMatthew G. Knepley       PetscFE fe = (PetscFE)obj;
256097c42addSMatthew G. Knepley 
2561cf51de39SMatthew G. Knepley       if (isRefined) {
25629566063dSJacob Faibussowitsch         PetscCall(PetscFERefine(fe, &feRef[f]));
2563cf51de39SMatthew G. Knepley       } else {
25649566063dSJacob Faibussowitsch         PetscCall(PetscObjectReference((PetscObject)fe));
2565cf51de39SMatthew G. Knepley         feRef[f] = fe;
2566cf51de39SMatthew G. Knepley       }
25679566063dSJacob Faibussowitsch       PetscCall(PetscFEGetDimension(feRef[f], &rNb));
25689566063dSJacob Faibussowitsch       PetscCall(PetscFEGetNumComponents(fe, &Nc));
256997c42addSMatthew G. Knepley     } else if (id == PETSCFV_CLASSID) {
257097c42addSMatthew G. Knepley       PetscFV        fv = (PetscFV)obj;
257197c42addSMatthew G. Knepley       PetscDualSpace Q;
257297c42addSMatthew G. Knepley 
2573cf51de39SMatthew G. Knepley       if (isRefined) {
25749566063dSJacob Faibussowitsch         PetscCall(PetscFVRefine(fv, &fvRef[f]));
2575cf51de39SMatthew G. Knepley       } else {
25769566063dSJacob Faibussowitsch         PetscCall(PetscObjectReference((PetscObject)fv));
2577cf51de39SMatthew G. Knepley         fvRef[f] = fv;
2578cf51de39SMatthew G. Knepley       }
25799566063dSJacob Faibussowitsch       PetscCall(PetscFVGetDualSpace(fvRef[f], &Q));
25809566063dSJacob Faibussowitsch       PetscCall(PetscDualSpaceGetDimension(Q, &rNb));
25819566063dSJacob Faibussowitsch       PetscCall(PetscFVGetDualSpace(fv, &Q));
25829566063dSJacob Faibussowitsch       PetscCall(PetscFVGetNumComponents(fv, &Nc));
258397c42addSMatthew G. Knepley     }
25849566063dSJacob Faibussowitsch     PetscCall(DMGetField(dmc, f, NULL, &objc));
25859566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetClassId(objc, &idc));
25862ea9c922SToby Isaac     if (idc == PETSCFE_CLASSID) {
25872ea9c922SToby Isaac       PetscFE fe = (PetscFE)objc;
25882ea9c922SToby Isaac 
25899566063dSJacob Faibussowitsch       PetscCall(PetscFEGetDimension(fe, &cNb));
25902ea9c922SToby Isaac     } else if (id == PETSCFV_CLASSID) {
25912ea9c922SToby Isaac       PetscFV        fv = (PetscFV)obj;
25922ea9c922SToby Isaac       PetscDualSpace Q;
25932ea9c922SToby Isaac 
25949566063dSJacob Faibussowitsch       PetscCall(PetscFVGetDualSpace(fv, &Q));
25959566063dSJacob Faibussowitsch       PetscCall(PetscDualSpaceGetDimension(Q, &cNb));
2596d69c5d34SMatthew G. Knepley     }
25972ea9c922SToby Isaac     rTotDim += rNb;
25982ea9c922SToby Isaac     cTotDim += cNb;
25992ea9c922SToby Isaac   }
26009566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(rTotDim * cTotDim, &elemMat));
26019566063dSJacob Faibussowitsch   PetscCall(PetscArrayzero(elemMat, rTotDim * cTotDim));
2602d69c5d34SMatthew G. Knepley   for (fieldI = 0, offsetI = 0; fieldI < Nf; ++fieldI) {
2603d69c5d34SMatthew G. Knepley     PetscDualSpace   Qref;
2604d69c5d34SMatthew G. Knepley     PetscQuadrature  f;
2605d69c5d34SMatthew G. Knepley     const PetscReal *qpoints, *qweights;
2606d69c5d34SMatthew G. Knepley     PetscReal       *points;
2607d69c5d34SMatthew G. Knepley     PetscInt         npoints = 0, Nc, Np, fpdim, i, k, p, d;
2608d69c5d34SMatthew G. Knepley 
2609d69c5d34SMatthew G. Knepley     /* Compose points from all dual basis functionals */
261097c42addSMatthew G. Knepley     if (feRef[fieldI]) {
26119566063dSJacob Faibussowitsch       PetscCall(PetscFEGetDualSpace(feRef[fieldI], &Qref));
26129566063dSJacob Faibussowitsch       PetscCall(PetscFEGetNumComponents(feRef[fieldI], &Nc));
261397c42addSMatthew G. Knepley     } else {
26149566063dSJacob Faibussowitsch       PetscCall(PetscFVGetDualSpace(fvRef[fieldI], &Qref));
26159566063dSJacob Faibussowitsch       PetscCall(PetscFVGetNumComponents(fvRef[fieldI], &Nc));
261697c42addSMatthew G. Knepley     }
26179566063dSJacob Faibussowitsch     PetscCall(PetscDualSpaceGetDimension(Qref, &fpdim));
2618d69c5d34SMatthew G. Knepley     for (i = 0; i < fpdim; ++i) {
26199566063dSJacob Faibussowitsch       PetscCall(PetscDualSpaceGetFunctional(Qref, i, &f));
26209566063dSJacob Faibussowitsch       PetscCall(PetscQuadratureGetData(f, NULL, NULL, &Np, NULL, NULL));
2621d69c5d34SMatthew G. Knepley       npoints += Np;
2622d69c5d34SMatthew G. Knepley     }
26239566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(npoints * dim, &points));
2624d69c5d34SMatthew G. Knepley     for (i = 0, k = 0; i < fpdim; ++i) {
26259566063dSJacob Faibussowitsch       PetscCall(PetscDualSpaceGetFunctional(Qref, i, &f));
26269566063dSJacob Faibussowitsch       PetscCall(PetscQuadratureGetData(f, NULL, NULL, &Np, &qpoints, NULL));
26279371c9d4SSatish Balay       for (p = 0; p < Np; ++p, ++k)
26289371c9d4SSatish Balay         for (d = 0; d < dim; ++d) points[k * dim + d] = qpoints[p * dim + d];
2629d69c5d34SMatthew G. Knepley     }
2630d69c5d34SMatthew G. Knepley 
2631d69c5d34SMatthew G. Knepley     for (fieldJ = 0, offsetJ = 0; fieldJ < Nf; ++fieldJ) {
263297c42addSMatthew G. Knepley       PetscObject  obj;
263397c42addSMatthew G. Knepley       PetscClassId id;
26349c3cf19fSMatthew G. Knepley       PetscInt     NcJ = 0, cpdim = 0, j, qNc;
2635d69c5d34SMatthew G. Knepley 
26369566063dSJacob Faibussowitsch       PetscCall(DMGetField(dmc, fieldJ, NULL, &obj));
26379566063dSJacob Faibussowitsch       PetscCall(PetscObjectGetClassId(obj, &id));
263897c42addSMatthew G. Knepley       if (id == PETSCFE_CLASSID) {
263997c42addSMatthew G. Knepley         PetscFE         fe = (PetscFE)obj;
2640ef0bb6c7SMatthew G. Knepley         PetscTabulation T  = NULL;
2641d69c5d34SMatthew G. Knepley 
2642d69c5d34SMatthew G. Knepley         /* Evaluate basis at points */
26439566063dSJacob Faibussowitsch         PetscCall(PetscFEGetNumComponents(fe, &NcJ));
26449566063dSJacob Faibussowitsch         PetscCall(PetscFEGetDimension(fe, &cpdim));
2645ffe73a53SMatthew G. Knepley         /* For now, fields only interpolate themselves */
2646ffe73a53SMatthew G. Knepley         if (fieldI == fieldJ) {
264763a3b9bcSJacob Faibussowitsch           PetscCheck(Nc == NcJ, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of components in fine space field %" PetscInt_FMT " does not match coarse field %" PetscInt_FMT, Nc, NcJ);
26489566063dSJacob Faibussowitsch           PetscCall(PetscFECreateTabulation(fe, 1, npoints, points, 0, &T));
2649d69c5d34SMatthew G. Knepley           for (i = 0, k = 0; i < fpdim; ++i) {
26509566063dSJacob Faibussowitsch             PetscCall(PetscDualSpaceGetFunctional(Qref, i, &f));
26519566063dSJacob Faibussowitsch             PetscCall(PetscQuadratureGetData(f, NULL, &qNc, &Np, NULL, &qweights));
265263a3b9bcSJacob Faibussowitsch             PetscCheck(qNc == NcJ, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of components in quadrature %" PetscInt_FMT " does not match coarse field %" PetscInt_FMT, qNc, NcJ);
2653d69c5d34SMatthew G. Knepley             for (p = 0; p < Np; ++p, ++k) {
265436a6d9c0SMatthew G. Knepley               for (j = 0; j < cpdim; ++j) {
2655d172c84bSMatthew G. Knepley                 /*
2656d172c84bSMatthew G. Knepley                    cTotDim:            Total columns in element interpolation matrix, sum of number of dual basis functionals in each field
2657d172c84bSMatthew G. Knepley                    offsetI, offsetJ:   Offsets into the larger element interpolation matrix for different fields
2658d172c84bSMatthew G. Knepley                    fpdim, i, cpdim, j: Dofs for fine and coarse grids, correspond to dual space basis functionals
2659d172c84bSMatthew G. Knepley                    qNC, Nc, Ncj, c:    Number of components in this field
2660d172c84bSMatthew G. Knepley                    Np, p:              Number of quad points in the fine grid functional i
2661d172c84bSMatthew G. Knepley                    k:                  i*Np + p, overall point number for the interpolation
2662d172c84bSMatthew G. Knepley                 */
2663ef0bb6c7SMatthew G. Knepley                 for (c = 0; c < Nc; ++c) elemMat[(offsetI + i) * cTotDim + offsetJ + j] += T->T[0][k * cpdim * NcJ + j * Nc + c] * qweights[p * qNc + c];
266436a6d9c0SMatthew G. Knepley               }
2665d69c5d34SMatthew G. Knepley             }
2666d69c5d34SMatthew G. Knepley           }
26679566063dSJacob Faibussowitsch           PetscCall(PetscTabulationDestroy(&T));
2668ffe73a53SMatthew G. Knepley         }
266997c42addSMatthew G. Knepley       } else if (id == PETSCFV_CLASSID) {
267097c42addSMatthew G. Knepley         PetscFV fv = (PetscFV)obj;
267197c42addSMatthew G. Knepley 
267297c42addSMatthew G. Knepley         /* Evaluate constant function at points */
26739566063dSJacob Faibussowitsch         PetscCall(PetscFVGetNumComponents(fv, &NcJ));
267497c42addSMatthew G. Knepley         cpdim = 1;
267597c42addSMatthew G. Knepley         /* For now, fields only interpolate themselves */
267697c42addSMatthew G. Knepley         if (fieldI == fieldJ) {
267763a3b9bcSJacob Faibussowitsch           PetscCheck(Nc == NcJ, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of components in fine space field %" PetscInt_FMT " does not match coarse field %" PetscInt_FMT, Nc, NcJ);
267897c42addSMatthew G. Knepley           for (i = 0, k = 0; i < fpdim; ++i) {
26799566063dSJacob Faibussowitsch             PetscCall(PetscDualSpaceGetFunctional(Qref, i, &f));
26809566063dSJacob Faibussowitsch             PetscCall(PetscQuadratureGetData(f, NULL, &qNc, &Np, NULL, &qweights));
268163a3b9bcSJacob Faibussowitsch             PetscCheck(qNc == NcJ, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of components in quadrature %" PetscInt_FMT " does not match coarse field %" PetscInt_FMT, qNc, NcJ);
268297c42addSMatthew G. Knepley             for (p = 0; p < Np; ++p, ++k) {
268397c42addSMatthew G. Knepley               for (j = 0; j < cpdim; ++j) {
2684458eb97cSMatthew G. Knepley                 for (c = 0; c < Nc; ++c) elemMat[(offsetI + i) * cTotDim + offsetJ + j] += 1.0 * qweights[p * qNc + c];
268597c42addSMatthew G. Knepley               }
268697c42addSMatthew G. Knepley             }
268797c42addSMatthew G. Knepley           }
268897c42addSMatthew G. Knepley         }
268997c42addSMatthew G. Knepley       }
2690d172c84bSMatthew G. Knepley       offsetJ += cpdim;
2691d69c5d34SMatthew G. Knepley     }
2692d172c84bSMatthew G. Knepley     offsetI += fpdim;
26939566063dSJacob Faibussowitsch     PetscCall(PetscFree(points));
2694d69c5d34SMatthew G. Knepley   }
26959566063dSJacob Faibussowitsch   if (mesh->printFEM > 1) PetscCall(DMPrintCellMatrix(0, name, rTotDim, cTotDim, elemMat));
26967f5b169aSMatthew G. Knepley   /* Preallocate matrix */
26977f5b169aSMatthew G. Knepley   {
2698c094ef40SMatthew G. Knepley     Mat          preallocator;
2699c094ef40SMatthew G. Knepley     PetscScalar *vals;
2700c094ef40SMatthew G. Knepley     PetscInt    *cellCIndices, *cellFIndices;
2701c094ef40SMatthew G. Knepley     PetscInt     locRows, locCols, cell;
27027f5b169aSMatthew G. Knepley 
27039566063dSJacob Faibussowitsch     PetscCall(MatGetLocalSize(In, &locRows, &locCols));
27049566063dSJacob Faibussowitsch     PetscCall(MatCreate(PetscObjectComm((PetscObject)In), &preallocator));
27059566063dSJacob Faibussowitsch     PetscCall(MatSetType(preallocator, MATPREALLOCATOR));
27069566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(preallocator, locRows, locCols, PETSC_DETERMINE, PETSC_DETERMINE));
27079566063dSJacob Faibussowitsch     PetscCall(MatSetUp(preallocator));
27089566063dSJacob Faibussowitsch     PetscCall(PetscCalloc3(rTotDim * cTotDim, &vals, cTotDim, &cellCIndices, rTotDim, &cellFIndices));
27097f5b169aSMatthew G. Knepley     for (cell = cStart; cell < cEnd; ++cell) {
2710cf51de39SMatthew G. Knepley       if (isRefined) {
27119566063dSJacob Faibussowitsch         PetscCall(DMPlexMatGetClosureIndicesRefined(dmf, fsection, fglobalSection, dmc, csection, cglobalSection, cell, cellCIndices, cellFIndices));
27129566063dSJacob Faibussowitsch         PetscCall(MatSetValues(preallocator, rTotDim, cellFIndices, cTotDim, cellCIndices, vals, INSERT_VALUES));
2713cf51de39SMatthew G. Knepley       } else {
27149566063dSJacob Faibussowitsch         PetscCall(DMPlexMatSetClosureGeneral(dmf, fsection, fglobalSection, dmc, csection, cglobalSection, preallocator, cell, vals, INSERT_VALUES));
2715cf51de39SMatthew G. Knepley       }
27167f5b169aSMatthew G. Knepley     }
27179566063dSJacob Faibussowitsch     PetscCall(PetscFree3(vals, cellCIndices, cellFIndices));
27189566063dSJacob Faibussowitsch     PetscCall(MatAssemblyBegin(preallocator, MAT_FINAL_ASSEMBLY));
27199566063dSJacob Faibussowitsch     PetscCall(MatAssemblyEnd(preallocator, MAT_FINAL_ASSEMBLY));
27209566063dSJacob Faibussowitsch     PetscCall(MatPreallocatorPreallocate(preallocator, PETSC_TRUE, In));
27219566063dSJacob Faibussowitsch     PetscCall(MatDestroy(&preallocator));
27227f5b169aSMatthew G. Knepley   }
27237f5b169aSMatthew G. Knepley   /* Fill matrix */
27249566063dSJacob Faibussowitsch   PetscCall(MatZeroEntries(In));
2725d69c5d34SMatthew G. Knepley   for (c = cStart; c < cEnd; ++c) {
2726cf51de39SMatthew G. Knepley     if (isRefined) {
27279566063dSJacob Faibussowitsch       PetscCall(DMPlexMatSetClosureRefined(dmf, fsection, fglobalSection, dmc, csection, cglobalSection, In, c, elemMat, INSERT_VALUES));
2728cf51de39SMatthew G. Knepley     } else {
27299566063dSJacob Faibussowitsch       PetscCall(DMPlexMatSetClosureGeneral(dmf, fsection, fglobalSection, dmc, csection, cglobalSection, In, c, elemMat, INSERT_VALUES));
2730cf51de39SMatthew G. Knepley     }
2731d69c5d34SMatthew G. Knepley   }
27329566063dSJacob Faibussowitsch   for (f = 0; f < Nf; ++f) PetscCall(PetscFEDestroy(&feRef[f]));
27339566063dSJacob Faibussowitsch   PetscCall(PetscFree2(feRef, fvRef));
27349566063dSJacob Faibussowitsch   PetscCall(PetscFree(elemMat));
27359566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(In, MAT_FINAL_ASSEMBLY));
27369566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(In, MAT_FINAL_ASSEMBLY));
27379318fe57SMatthew G. Knepley   if (mesh->printFEM > 1) {
27389566063dSJacob Faibussowitsch     PetscCall(PetscPrintf(PetscObjectComm((PetscObject)In), "%s:\n", name));
27399566063dSJacob Faibussowitsch     PetscCall(MatChop(In, 1.0e-10));
27409566063dSJacob Faibussowitsch     PetscCall(MatView(In, NULL));
2741d69c5d34SMatthew G. Knepley   }
27429566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(DMPLEX_InterpolatorFEM, dmc, dmf, 0, 0));
27433ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2744d69c5d34SMatthew G. Knepley }
27456c73c22cSMatthew G. Knepley 
2746d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeMassMatrixNested(DM dmc, DM dmf, Mat mass, void *user)
2747d71ae5a4SJacob Faibussowitsch {
2748bd041c0cSMatthew G. Knepley   SETERRQ(PetscObjectComm((PetscObject)dmc), PETSC_ERR_SUP, "Laziness");
2749bd041c0cSMatthew G. Knepley }
2750bd041c0cSMatthew G. Knepley 
275168132eb9SMatthew G. Knepley /*@
2752a1cb98faSBarry Smith   DMPlexComputeInterpolatorGeneral - Form the local portion of the interpolation matrix I from the coarse `DM` to a non-nested fine `DM`.
275368132eb9SMatthew G. Knepley 
275468132eb9SMatthew G. Knepley   Input Parameters:
275568132eb9SMatthew G. Knepley + dmf  - The fine mesh
275668132eb9SMatthew G. Knepley . dmc  - The coarse mesh
275768132eb9SMatthew G. Knepley - user - The user context
275868132eb9SMatthew G. Knepley 
275968132eb9SMatthew G. Knepley   Output Parameter:
276068132eb9SMatthew G. Knepley . In  - The interpolation matrix
276168132eb9SMatthew G. Knepley 
276268132eb9SMatthew G. Knepley   Level: developer
276368132eb9SMatthew G. Knepley 
2764a1cb98faSBarry Smith .seealso: [](chapter_unstructured), `DM`, `DMPLEX`, `DMPlexComputeInterpolatorNested()`, `DMPlexComputeJacobianFEM()`
276568132eb9SMatthew G. Knepley @*/
2766d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeInterpolatorGeneral(DM dmc, DM dmf, Mat In, void *user)
2767d71ae5a4SJacob Faibussowitsch {
276864e98e1dSMatthew G. Knepley   DM_Plex     *mesh = (DM_Plex *)dmf->data;
276964e98e1dSMatthew G. Knepley   const char  *name = "Interpolator";
27704ef9d792SMatthew G. Knepley   PetscDS      prob;
2771a0806964SMatthew G. Knepley   Mat          interp;
2772a0806964SMatthew G. Knepley   PetscSection fsection, globalFSection;
2773a0806964SMatthew G. Knepley   PetscSection csection, globalCSection;
2774a0806964SMatthew G. Knepley   PetscInt     locRows, locCols;
27754ef9d792SMatthew G. Knepley   PetscReal   *x, *v0, *J, *invJ, detJ;
27764ef9d792SMatthew G. Knepley   PetscReal   *v0c, *Jc, *invJc, detJc;
27774ef9d792SMatthew G. Knepley   PetscScalar *elemMat;
2778a0806964SMatthew G. Knepley   PetscInt     dim, Nf, field, totDim, cStart, cEnd, cell, ccell, s;
27794ef9d792SMatthew G. Knepley 
27804ef9d792SMatthew G. Knepley   PetscFunctionBegin;
27819566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(DMPLEX_InterpolatorFEM, dmc, dmf, 0, 0));
27829566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateDim(dmc, &dim));
27839566063dSJacob Faibussowitsch   PetscCall(DMGetDS(dmc, &prob));
27849566063dSJacob Faibussowitsch   PetscCall(PetscDSGetWorkspace(prob, &x, NULL, NULL, NULL, NULL));
27859566063dSJacob Faibussowitsch   PetscCall(PetscDSGetNumFields(prob, &Nf));
27869566063dSJacob Faibussowitsch   PetscCall(PetscMalloc3(dim, &v0, dim * dim, &J, dim * dim, &invJ));
27879566063dSJacob Faibussowitsch   PetscCall(PetscMalloc3(dim, &v0c, dim * dim, &Jc, dim * dim, &invJc));
27889566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dmf, &fsection));
27899566063dSJacob Faibussowitsch   PetscCall(DMGetGlobalSection(dmf, &globalFSection));
27909566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dmc, &csection));
27919566063dSJacob Faibussowitsch   PetscCall(DMGetGlobalSection(dmc, &globalCSection));
2792a0806964SMatthew G. Knepley   PetscCall(DMPlexGetSimplexOrBoxCells(dmf, 0, &cStart, &cEnd));
27939566063dSJacob Faibussowitsch   PetscCall(PetscDSGetTotalDimension(prob, &totDim));
27949566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(totDim, &elemMat));
27954ef9d792SMatthew G. Knepley 
2796a0806964SMatthew G. Knepley   PetscCall(MatGetLocalSize(In, &locRows, &locCols));
2797a0806964SMatthew G. Knepley   PetscCall(MatCreate(PetscObjectComm((PetscObject)In), &interp));
2798a0806964SMatthew G. Knepley   PetscCall(MatSetType(interp, MATPREALLOCATOR));
2799a0806964SMatthew G. Knepley   PetscCall(MatSetSizes(interp, locRows, locCols, PETSC_DETERMINE, PETSC_DETERMINE));
2800a0806964SMatthew G. Knepley   PetscCall(MatSetUp(interp));
2801a0806964SMatthew G. Knepley   for (s = 0; s < 2; ++s) {
28024ef9d792SMatthew G. Knepley     for (field = 0; field < Nf; ++field) {
28034ef9d792SMatthew G. Knepley       PetscObject      obj;
28044ef9d792SMatthew G. Knepley       PetscClassId     id;
2805c0d7054bSMatthew G. Knepley       PetscDualSpace   Q = NULL;
2806ef0bb6c7SMatthew G. Knepley       PetscTabulation  T = NULL;
28074ef9d792SMatthew G. Knepley       PetscQuadrature  f;
28084ef9d792SMatthew G. Knepley       const PetscReal *qpoints, *qweights;
2809d0f6233fSMatthew G. Knepley       PetscInt         Nc, qNc, Np, fpdim, off, i, d;
28104ef9d792SMatthew G. Knepley 
2811d0f6233fSMatthew G. Knepley       PetscCall(PetscDSGetFieldOffset(prob, field, &off));
28129566063dSJacob Faibussowitsch       PetscCall(PetscDSGetDiscretization(prob, field, &obj));
28139566063dSJacob Faibussowitsch       PetscCall(PetscObjectGetClassId(obj, &id));
28144ef9d792SMatthew G. Knepley       if (id == PETSCFE_CLASSID) {
28154ef9d792SMatthew G. Knepley         PetscFE fe = (PetscFE)obj;
28164ef9d792SMatthew G. Knepley 
28179566063dSJacob Faibussowitsch         PetscCall(PetscFEGetDualSpace(fe, &Q));
28189566063dSJacob Faibussowitsch         PetscCall(PetscFEGetNumComponents(fe, &Nc));
2819a0806964SMatthew G. Knepley         if (s) PetscCall(PetscFECreateTabulation(fe, 1, 1, x, 0, &T));
28204ef9d792SMatthew G. Knepley       } else if (id == PETSCFV_CLASSID) {
28214ef9d792SMatthew G. Knepley         PetscFV fv = (PetscFV)obj;
28224ef9d792SMatthew G. Knepley 
28239566063dSJacob Faibussowitsch         PetscCall(PetscFVGetDualSpace(fv, &Q));
28244ef9d792SMatthew G. Knepley         Nc = 1;
282563a3b9bcSJacob Faibussowitsch       } else SETERRQ(PetscObjectComm((PetscObject)dmc), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, field);
28269566063dSJacob Faibussowitsch       PetscCall(PetscDualSpaceGetDimension(Q, &fpdim));
28274ef9d792SMatthew G. Knepley       /* For each fine grid cell */
28284ef9d792SMatthew G. Knepley       for (cell = cStart; cell < cEnd; ++cell) {
28294ef9d792SMatthew G. Knepley         PetscInt *findices, *cindices;
28304ef9d792SMatthew G. Knepley         PetscInt  numFIndices, numCIndices;
28314ef9d792SMatthew G. Knepley 
28329566063dSJacob Faibussowitsch         PetscCall(DMPlexGetClosureIndices(dmf, fsection, globalFSection, cell, PETSC_FALSE, &numFIndices, &findices, NULL, NULL));
28339566063dSJacob Faibussowitsch         PetscCall(DMPlexComputeCellGeometryFEM(dmf, cell, NULL, v0, J, invJ, &detJ));
2834d0f6233fSMatthew G. Knepley         PetscCheck(numFIndices == totDim, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of fine indices %" PetscInt_FMT " != %" PetscInt_FMT " dual basis vecs", numFIndices, totDim);
28354ef9d792SMatthew G. Knepley         for (i = 0; i < fpdim; ++i) {
28364ef9d792SMatthew G. Knepley           Vec                pointVec;
28374ef9d792SMatthew G. Knepley           PetscScalar       *pV;
283812111d7cSToby Isaac           PetscSF            coarseCellSF = NULL;
28393a93e3b7SToby Isaac           const PetscSFNode *coarseCells;
2840d0f6233fSMatthew G. Knepley           PetscInt           numCoarseCells, cpdim, row = findices[i + off], q, c, j;
28414ef9d792SMatthew G. Knepley 
28424ef9d792SMatthew G. Knepley           /* Get points from the dual basis functional quadrature */
28439566063dSJacob Faibussowitsch           PetscCall(PetscDualSpaceGetFunctional(Q, i, &f));
28449566063dSJacob Faibussowitsch           PetscCall(PetscQuadratureGetData(f, NULL, &qNc, &Np, &qpoints, &qweights));
284563a3b9bcSJacob Faibussowitsch           PetscCheck(qNc == Nc, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of components in quadrature %" PetscInt_FMT " does not match coarse field %" PetscInt_FMT, qNc, Nc);
28469566063dSJacob Faibussowitsch           PetscCall(VecCreateSeq(PETSC_COMM_SELF, Np * dim, &pointVec));
28479566063dSJacob Faibussowitsch           PetscCall(VecSetBlockSize(pointVec, dim));
28489566063dSJacob Faibussowitsch           PetscCall(VecGetArray(pointVec, &pV));
28494ef9d792SMatthew G. Knepley           for (q = 0; q < Np; ++q) {
2850c330f8ffSToby Isaac             const PetscReal xi0[3] = {-1., -1., -1.};
2851c330f8ffSToby Isaac 
28524ef9d792SMatthew G. Knepley             /* Transform point to real space */
2853c330f8ffSToby Isaac             CoordinatesRefToReal(dim, dim, xi0, v0, J, &qpoints[q * dim], x);
28544ef9d792SMatthew G. Knepley             for (d = 0; d < dim; ++d) pV[q * dim + d] = x[d];
28554ef9d792SMatthew G. Knepley           }
28569566063dSJacob Faibussowitsch           PetscCall(VecRestoreArray(pointVec, &pV));
28574ef9d792SMatthew G. Knepley           /* Get set of coarse cells that overlap points (would like to group points by coarse cell) */
28581555c271SMatthew G. Knepley           /* OPT: Read this out from preallocation information */
28599566063dSJacob Faibussowitsch           PetscCall(DMLocatePoints(dmc, pointVec, DM_POINTLOCATION_NEAREST, &coarseCellSF));
28604ef9d792SMatthew G. Knepley           /* Update preallocation info */
28619566063dSJacob Faibussowitsch           PetscCall(PetscSFGetGraph(coarseCellSF, NULL, &numCoarseCells, NULL, &coarseCells));
28625f80ce2aSJacob Faibussowitsch           PetscCheck(numCoarseCells == Np, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Not all closure points located");
28639566063dSJacob Faibussowitsch           PetscCall(VecGetArray(pointVec, &pV));
28644ef9d792SMatthew G. Knepley           for (ccell = 0; ccell < numCoarseCells; ++ccell) {
2865826eb36dSMatthew G. Knepley             PetscReal       pVReal[3];
2866c330f8ffSToby Isaac             const PetscReal xi0[3] = {-1., -1., -1.};
2867826eb36dSMatthew G. Knepley 
28689566063dSJacob Faibussowitsch             PetscCall(DMPlexGetClosureIndices(dmc, csection, globalCSection, coarseCells[ccell].index, PETSC_FALSE, &numCIndices, &cindices, NULL, NULL));
2869a0806964SMatthew G. Knepley             if (id == PETSCFE_CLASSID) PetscCall(PetscFEGetDimension((PetscFE)obj, &cpdim));
2870a0806964SMatthew G. Knepley             else cpdim = 1;
2871a0806964SMatthew G. Knepley 
2872a0806964SMatthew G. Knepley             if (s) {
28734ef9d792SMatthew G. Knepley               /* Transform points from real space to coarse reference space */
28749566063dSJacob Faibussowitsch               PetscCall(DMPlexComputeCellGeometryFEM(dmc, coarseCells[ccell].index, NULL, v0c, Jc, invJc, &detJc));
2875e2d86523SMatthew G. Knepley               for (d = 0; d < dim; ++d) pVReal[d] = PetscRealPart(pV[ccell * dim + d]);
2876c330f8ffSToby Isaac               CoordinatesRealToRef(dim, dim, xi0, v0c, invJc, pVReal, x);
28774ef9d792SMatthew G. Knepley 
28784ef9d792SMatthew G. Knepley               if (id == PETSCFE_CLASSID) {
28794ef9d792SMatthew G. Knepley                 /* Evaluate coarse basis on contained point */
2880a0806964SMatthew G. Knepley                 PetscCall(PetscFEComputeTabulation((PetscFE)obj, 1, x, 0, T));
28819566063dSJacob Faibussowitsch                 PetscCall(PetscArrayzero(elemMat, cpdim));
28824ef9d792SMatthew G. Knepley                 /* Get elemMat entries by multiplying by weight */
28834ef9d792SMatthew G. Knepley                 for (j = 0; j < cpdim; ++j) {
2884ef0bb6c7SMatthew G. Knepley                   for (c = 0; c < Nc; ++c) elemMat[j] += T->T[0][j * Nc + c] * qweights[ccell * qNc + c];
28854ef9d792SMatthew G. Knepley                 }
28864ef9d792SMatthew G. Knepley               } else {
28874ef9d792SMatthew G. Knepley                 for (j = 0; j < cpdim; ++j) {
28889c3cf19fSMatthew G. Knepley                   for (c = 0; c < Nc; ++c) elemMat[j] += 1.0 * qweights[ccell * qNc + c];
28894ef9d792SMatthew G. Knepley                 }
28904ef9d792SMatthew G. Knepley               }
28919566063dSJacob Faibussowitsch               if (mesh->printFEM > 1) PetscCall(DMPrintCellMatrix(cell, name, 1, numCIndices, elemMat));
2892a0806964SMatthew G. Knepley             }
2893a0806964SMatthew G. Knepley             /* Update interpolator */
2894d0f6233fSMatthew G. Knepley             PetscCheck(numCIndices == totDim, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Number of element matrix columns %" PetscInt_FMT " != %" PetscInt_FMT, numCIndices, totDim);
2895a0806964SMatthew G. Knepley             PetscCall(MatSetValues(interp, 1, &row, cpdim, &cindices[off], elemMat, INSERT_VALUES));
28969566063dSJacob Faibussowitsch             PetscCall(DMPlexRestoreClosureIndices(dmc, csection, globalCSection, coarseCells[ccell].index, PETSC_FALSE, &numCIndices, &cindices, NULL, NULL));
28974ef9d792SMatthew G. Knepley           }
28989566063dSJacob Faibussowitsch           PetscCall(VecRestoreArray(pointVec, &pV));
28999566063dSJacob Faibussowitsch           PetscCall(PetscSFDestroy(&coarseCellSF));
29009566063dSJacob Faibussowitsch           PetscCall(VecDestroy(&pointVec));
29014ef9d792SMatthew G. Knepley         }
29029566063dSJacob Faibussowitsch         PetscCall(DMPlexRestoreClosureIndices(dmf, fsection, globalFSection, cell, PETSC_FALSE, &numFIndices, &findices, NULL, NULL));
29034ef9d792SMatthew G. Knepley       }
2904a0806964SMatthew G. Knepley       if (s && id == PETSCFE_CLASSID) PetscCall(PetscTabulationDestroy(&T));
2905a0806964SMatthew G. Knepley     }
2906a0806964SMatthew G. Knepley     if (!s) {
2907a0806964SMatthew G. Knepley       PetscCall(MatAssemblyBegin(interp, MAT_FINAL_ASSEMBLY));
2908a0806964SMatthew G. Knepley       PetscCall(MatAssemblyEnd(interp, MAT_FINAL_ASSEMBLY));
2909a0806964SMatthew G. Knepley       PetscCall(MatPreallocatorPreallocate(interp, PETSC_TRUE, In));
2910a0806964SMatthew G. Knepley       PetscCall(MatDestroy(&interp));
2911a0806964SMatthew G. Knepley       interp = In;
2912a0806964SMatthew G. Knepley     }
29134ef9d792SMatthew G. Knepley   }
29149566063dSJacob Faibussowitsch   PetscCall(PetscFree3(v0, J, invJ));
29159566063dSJacob Faibussowitsch   PetscCall(PetscFree3(v0c, Jc, invJc));
29169566063dSJacob Faibussowitsch   PetscCall(PetscFree(elemMat));
29179566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(In, MAT_FINAL_ASSEMBLY));
29189566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(In, MAT_FINAL_ASSEMBLY));
29199566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(DMPLEX_InterpolatorFEM, dmc, dmf, 0, 0));
29203ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
29214ef9d792SMatthew G. Knepley }
29224ef9d792SMatthew G. Knepley 
292346fa42a0SMatthew G. Knepley /*@
2924a1cb98faSBarry Smith   DMPlexComputeMassMatrixGeneral - Form the local portion of the mass matrix M from the coarse `DM` to a non-nested fine `DM`.
2925bd041c0cSMatthew G. Knepley 
2926bd041c0cSMatthew G. Knepley   Input Parameters:
2927bd041c0cSMatthew G. Knepley + dmf  - The fine mesh
2928bd041c0cSMatthew G. Knepley . dmc  - The coarse mesh
2929bd041c0cSMatthew G. Knepley - user - The user context
2930bd041c0cSMatthew G. Knepley 
2931bd041c0cSMatthew G. Knepley   Output Parameter:
2932bd041c0cSMatthew G. Knepley . mass  - The mass matrix
2933bd041c0cSMatthew G. Knepley 
2934bd041c0cSMatthew G. Knepley   Level: developer
2935bd041c0cSMatthew G. Knepley 
2936a1cb98faSBarry Smith .seealso: [](chapter_unstructured), `DM`, `DMPLEX`, `DMPlexComputeMassMatrixNested()`, `DMPlexComputeInterpolatorNested()`, `DMPlexComputeInterpolatorGeneral()`, `DMPlexComputeJacobianFEM()`
2937bd041c0cSMatthew G. Knepley @*/
2938d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeMassMatrixGeneral(DM dmc, DM dmf, Mat mass, void *user)
2939d71ae5a4SJacob Faibussowitsch {
2940bd041c0cSMatthew G. Knepley   DM_Plex     *mesh = (DM_Plex *)dmf->data;
2941bd041c0cSMatthew G. Knepley   const char  *name = "Mass Matrix";
2942bd041c0cSMatthew G. Knepley   PetscDS      prob;
2943bd041c0cSMatthew G. Knepley   PetscSection fsection, csection, globalFSection, globalCSection;
2944e8f14785SLisandro Dalcin   PetscHSetIJ  ht;
2945bd041c0cSMatthew G. Knepley   PetscLayout  rLayout;
2946bd041c0cSMatthew G. Knepley   PetscInt    *dnz, *onz;
2947bd041c0cSMatthew G. Knepley   PetscInt     locRows, rStart, rEnd;
2948bd041c0cSMatthew G. Knepley   PetscReal   *x, *v0, *J, *invJ, detJ;
2949bd041c0cSMatthew G. Knepley   PetscReal   *v0c, *Jc, *invJc, detJc;
2950bd041c0cSMatthew G. Knepley   PetscScalar *elemMat;
2951bd041c0cSMatthew G. Knepley   PetscInt     dim, Nf, field, totDim, cStart, cEnd, cell, ccell;
2952bd041c0cSMatthew G. Knepley 
2953bd041c0cSMatthew G. Knepley   PetscFunctionBegin;
29549566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateDim(dmc, &dim));
29559566063dSJacob Faibussowitsch   PetscCall(DMGetDS(dmc, &prob));
29569566063dSJacob Faibussowitsch   PetscCall(PetscDSGetWorkspace(prob, &x, NULL, NULL, NULL, NULL));
29579566063dSJacob Faibussowitsch   PetscCall(PetscDSGetNumFields(prob, &Nf));
29589566063dSJacob Faibussowitsch   PetscCall(PetscMalloc3(dim, &v0, dim * dim, &J, dim * dim, &invJ));
29599566063dSJacob Faibussowitsch   PetscCall(PetscMalloc3(dim, &v0c, dim * dim, &Jc, dim * dim, &invJc));
29609566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dmf, &fsection));
29619566063dSJacob Faibussowitsch   PetscCall(DMGetGlobalSection(dmf, &globalFSection));
29629566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dmc, &csection));
29639566063dSJacob Faibussowitsch   PetscCall(DMGetGlobalSection(dmc, &globalCSection));
29649566063dSJacob Faibussowitsch   PetscCall(DMPlexGetHeightStratum(dmf, 0, &cStart, &cEnd));
29659566063dSJacob Faibussowitsch   PetscCall(PetscDSGetTotalDimension(prob, &totDim));
29669566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(totDim, &elemMat));
2967bd041c0cSMatthew G. Knepley 
29689566063dSJacob Faibussowitsch   PetscCall(MatGetLocalSize(mass, &locRows, NULL));
29699566063dSJacob Faibussowitsch   PetscCall(PetscLayoutCreate(PetscObjectComm((PetscObject)mass), &rLayout));
29709566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetLocalSize(rLayout, locRows));
29719566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetBlockSize(rLayout, 1));
29729566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(rLayout));
29739566063dSJacob Faibussowitsch   PetscCall(PetscLayoutGetRange(rLayout, &rStart, &rEnd));
29749566063dSJacob Faibussowitsch   PetscCall(PetscLayoutDestroy(&rLayout));
29759566063dSJacob Faibussowitsch   PetscCall(PetscCalloc2(locRows, &dnz, locRows, &onz));
29769566063dSJacob Faibussowitsch   PetscCall(PetscHSetIJCreate(&ht));
2977bd041c0cSMatthew G. Knepley   for (field = 0; field < Nf; ++field) {
2978bd041c0cSMatthew G. Knepley     PetscObject      obj;
2979bd041c0cSMatthew G. Knepley     PetscClassId     id;
2980bd041c0cSMatthew G. Knepley     PetscQuadrature  quad;
2981bd041c0cSMatthew G. Knepley     const PetscReal *qpoints;
2982bd041c0cSMatthew G. Knepley     PetscInt         Nq, Nc, i, d;
2983bd041c0cSMatthew G. Knepley 
29849566063dSJacob Faibussowitsch     PetscCall(PetscDSGetDiscretization(prob, field, &obj));
29859566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetClassId(obj, &id));
29869566063dSJacob Faibussowitsch     if (id == PETSCFE_CLASSID) PetscCall(PetscFEGetQuadrature((PetscFE)obj, &quad));
29879566063dSJacob Faibussowitsch     else PetscCall(PetscFVGetQuadrature((PetscFV)obj, &quad));
29889566063dSJacob Faibussowitsch     PetscCall(PetscQuadratureGetData(quad, NULL, &Nc, &Nq, &qpoints, NULL));
2989bd041c0cSMatthew G. Knepley     /* For each fine grid cell */
2990bd041c0cSMatthew G. Knepley     for (cell = cStart; cell < cEnd; ++cell) {
2991bd041c0cSMatthew G. Knepley       Vec                pointVec;
2992bd041c0cSMatthew G. Knepley       PetscScalar       *pV;
2993bd041c0cSMatthew G. Knepley       PetscSF            coarseCellSF = NULL;
2994bd041c0cSMatthew G. Knepley       const PetscSFNode *coarseCells;
2995bd041c0cSMatthew G. Knepley       PetscInt           numCoarseCells, q, c;
2996bd041c0cSMatthew G. Knepley       PetscInt          *findices, *cindices;
2997bd041c0cSMatthew G. Knepley       PetscInt           numFIndices, numCIndices;
2998bd041c0cSMatthew G. Knepley 
29999566063dSJacob Faibussowitsch       PetscCall(DMPlexGetClosureIndices(dmf, fsection, globalFSection, cell, PETSC_FALSE, &numFIndices, &findices, NULL, NULL));
30009566063dSJacob Faibussowitsch       PetscCall(DMPlexComputeCellGeometryFEM(dmf, cell, NULL, v0, J, invJ, &detJ));
3001bd041c0cSMatthew G. Knepley       /* Get points from the quadrature */
30029566063dSJacob Faibussowitsch       PetscCall(VecCreateSeq(PETSC_COMM_SELF, Nq * dim, &pointVec));
30039566063dSJacob Faibussowitsch       PetscCall(VecSetBlockSize(pointVec, dim));
30049566063dSJacob Faibussowitsch       PetscCall(VecGetArray(pointVec, &pV));
3005bd041c0cSMatthew G. Knepley       for (q = 0; q < Nq; ++q) {
3006c330f8ffSToby Isaac         const PetscReal xi0[3] = {-1., -1., -1.};
3007c330f8ffSToby Isaac 
3008bd041c0cSMatthew G. Knepley         /* Transform point to real space */
3009c330f8ffSToby Isaac         CoordinatesRefToReal(dim, dim, xi0, v0, J, &qpoints[q * dim], x);
3010bd041c0cSMatthew G. Knepley         for (d = 0; d < dim; ++d) pV[q * dim + d] = x[d];
3011bd041c0cSMatthew G. Knepley       }
30129566063dSJacob Faibussowitsch       PetscCall(VecRestoreArray(pointVec, &pV));
3013bd041c0cSMatthew G. Knepley       /* Get set of coarse cells that overlap points (would like to group points by coarse cell) */
30149566063dSJacob Faibussowitsch       PetscCall(DMLocatePoints(dmc, pointVec, DM_POINTLOCATION_NEAREST, &coarseCellSF));
30159566063dSJacob Faibussowitsch       PetscCall(PetscSFViewFromOptions(coarseCellSF, NULL, "-interp_sf_view"));
3016bd041c0cSMatthew G. Knepley       /* Update preallocation info */
30179566063dSJacob Faibussowitsch       PetscCall(PetscSFGetGraph(coarseCellSF, NULL, &numCoarseCells, NULL, &coarseCells));
30185f80ce2aSJacob Faibussowitsch       PetscCheck(numCoarseCells == Nq, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Not all closure points located");
3019bd041c0cSMatthew G. Knepley       {
3020e8f14785SLisandro Dalcin         PetscHashIJKey key;
3021e8f14785SLisandro Dalcin         PetscBool      missing;
3022bd041c0cSMatthew G. Knepley 
3023bd041c0cSMatthew G. Knepley         for (i = 0; i < numFIndices; ++i) {
3024e8f14785SLisandro Dalcin           key.i = findices[i];
3025e8f14785SLisandro Dalcin           if (key.i >= 0) {
3026bd041c0cSMatthew G. Knepley             /* Get indices for coarse elements */
3027bd041c0cSMatthew G. Knepley             for (ccell = 0; ccell < numCoarseCells; ++ccell) {
30289566063dSJacob Faibussowitsch               PetscCall(DMPlexGetClosureIndices(dmc, csection, globalCSection, coarseCells[ccell].index, PETSC_FALSE, &numCIndices, &cindices, NULL, NULL));
3029bd041c0cSMatthew G. Knepley               for (c = 0; c < numCIndices; ++c) {
3030e8f14785SLisandro Dalcin                 key.j = cindices[c];
3031e8f14785SLisandro Dalcin                 if (key.j < 0) continue;
30329566063dSJacob Faibussowitsch                 PetscCall(PetscHSetIJQueryAdd(ht, key, &missing));
3033bd041c0cSMatthew G. Knepley                 if (missing) {
3034e8f14785SLisandro Dalcin                   if ((key.j >= rStart) && (key.j < rEnd)) ++dnz[key.i - rStart];
3035e8f14785SLisandro Dalcin                   else ++onz[key.i - rStart];
3036bd041c0cSMatthew G. Knepley                 }
3037bd041c0cSMatthew G. Knepley               }
30389566063dSJacob Faibussowitsch               PetscCall(DMPlexRestoreClosureIndices(dmc, csection, globalCSection, coarseCells[ccell].index, PETSC_FALSE, &numCIndices, &cindices, NULL, NULL));
3039bd041c0cSMatthew G. Knepley             }
3040bd041c0cSMatthew G. Knepley           }
3041bd041c0cSMatthew G. Knepley         }
3042bd041c0cSMatthew G. Knepley       }
30439566063dSJacob Faibussowitsch       PetscCall(PetscSFDestroy(&coarseCellSF));
30449566063dSJacob Faibussowitsch       PetscCall(VecDestroy(&pointVec));
30459566063dSJacob Faibussowitsch       PetscCall(DMPlexRestoreClosureIndices(dmf, fsection, globalFSection, cell, PETSC_FALSE, &numFIndices, &findices, NULL, NULL));
3046bd041c0cSMatthew G. Knepley     }
3047bd041c0cSMatthew G. Knepley   }
30489566063dSJacob Faibussowitsch   PetscCall(PetscHSetIJDestroy(&ht));
30499566063dSJacob Faibussowitsch   PetscCall(MatXAIJSetPreallocation(mass, 1, dnz, onz, NULL, NULL));
30509566063dSJacob Faibussowitsch   PetscCall(MatSetOption(mass, MAT_NEW_NONZERO_ALLOCATION_ERR, PETSC_TRUE));
30519566063dSJacob Faibussowitsch   PetscCall(PetscFree2(dnz, onz));
3052bd041c0cSMatthew G. Knepley   for (field = 0; field < Nf; ++field) {
3053bd041c0cSMatthew G. Knepley     PetscObject      obj;
3054bd041c0cSMatthew G. Knepley     PetscClassId     id;
3055ef0bb6c7SMatthew G. Knepley     PetscTabulation  T, Tfine;
3056bd041c0cSMatthew G. Knepley     PetscQuadrature  quad;
3057bd041c0cSMatthew G. Knepley     const PetscReal *qpoints, *qweights;
3058bd041c0cSMatthew G. Knepley     PetscInt         Nq, Nc, i, d;
3059bd041c0cSMatthew G. Knepley 
30609566063dSJacob Faibussowitsch     PetscCall(PetscDSGetDiscretization(prob, field, &obj));
30619566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetClassId(obj, &id));
3062ef0bb6c7SMatthew G. Knepley     if (id == PETSCFE_CLASSID) {
30639566063dSJacob Faibussowitsch       PetscCall(PetscFEGetQuadrature((PetscFE)obj, &quad));
30649566063dSJacob Faibussowitsch       PetscCall(PetscFEGetCellTabulation((PetscFE)obj, 1, &Tfine));
30659566063dSJacob Faibussowitsch       PetscCall(PetscFECreateTabulation((PetscFE)obj, 1, 1, x, 0, &T));
3066ef0bb6c7SMatthew G. Knepley     } else {
30679566063dSJacob Faibussowitsch       PetscCall(PetscFVGetQuadrature((PetscFV)obj, &quad));
3068ef0bb6c7SMatthew G. Knepley     }
30699566063dSJacob Faibussowitsch     PetscCall(PetscQuadratureGetData(quad, NULL, &Nc, &Nq, &qpoints, &qweights));
3070bd041c0cSMatthew G. Knepley     /* For each fine grid cell */
3071bd041c0cSMatthew G. Knepley     for (cell = cStart; cell < cEnd; ++cell) {
3072bd041c0cSMatthew G. Knepley       Vec                pointVec;
3073bd041c0cSMatthew G. Knepley       PetscScalar       *pV;
3074bd041c0cSMatthew G. Knepley       PetscSF            coarseCellSF = NULL;
3075bd041c0cSMatthew G. Knepley       const PetscSFNode *coarseCells;
3076bd041c0cSMatthew G. Knepley       PetscInt           numCoarseCells, cpdim, q, c, j;
3077bd041c0cSMatthew G. Knepley       PetscInt          *findices, *cindices;
3078bd041c0cSMatthew G. Knepley       PetscInt           numFIndices, numCIndices;
3079bd041c0cSMatthew G. Knepley 
30809566063dSJacob Faibussowitsch       PetscCall(DMPlexGetClosureIndices(dmf, fsection, globalFSection, cell, PETSC_FALSE, &numFIndices, &findices, NULL, NULL));
30819566063dSJacob Faibussowitsch       PetscCall(DMPlexComputeCellGeometryFEM(dmf, cell, NULL, v0, J, invJ, &detJ));
3082bd041c0cSMatthew G. Knepley       /* Get points from the quadrature */
30839566063dSJacob Faibussowitsch       PetscCall(VecCreateSeq(PETSC_COMM_SELF, Nq * dim, &pointVec));
30849566063dSJacob Faibussowitsch       PetscCall(VecSetBlockSize(pointVec, dim));
30859566063dSJacob Faibussowitsch       PetscCall(VecGetArray(pointVec, &pV));
3086bd041c0cSMatthew G. Knepley       for (q = 0; q < Nq; ++q) {
3087c330f8ffSToby Isaac         const PetscReal xi0[3] = {-1., -1., -1.};
3088c330f8ffSToby Isaac 
3089bd041c0cSMatthew G. Knepley         /* Transform point to real space */
3090c330f8ffSToby Isaac         CoordinatesRefToReal(dim, dim, xi0, v0, J, &qpoints[q * dim], x);
3091bd041c0cSMatthew G. Knepley         for (d = 0; d < dim; ++d) pV[q * dim + d] = x[d];
3092bd041c0cSMatthew G. Knepley       }
30939566063dSJacob Faibussowitsch       PetscCall(VecRestoreArray(pointVec, &pV));
3094bd041c0cSMatthew G. Knepley       /* Get set of coarse cells that overlap points (would like to group points by coarse cell) */
30959566063dSJacob Faibussowitsch       PetscCall(DMLocatePoints(dmc, pointVec, DM_POINTLOCATION_NEAREST, &coarseCellSF));
3096bd041c0cSMatthew G. Knepley       /* Update matrix */
30979566063dSJacob Faibussowitsch       PetscCall(PetscSFGetGraph(coarseCellSF, NULL, &numCoarseCells, NULL, &coarseCells));
30985f80ce2aSJacob Faibussowitsch       PetscCheck(numCoarseCells == Nq, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Not all closure points located");
30999566063dSJacob Faibussowitsch       PetscCall(VecGetArray(pointVec, &pV));
3100bd041c0cSMatthew G. Knepley       for (ccell = 0; ccell < numCoarseCells; ++ccell) {
3101bd041c0cSMatthew G. Knepley         PetscReal       pVReal[3];
3102c330f8ffSToby Isaac         const PetscReal xi0[3] = {-1., -1., -1.};
3103c330f8ffSToby Isaac 
31049566063dSJacob Faibussowitsch         PetscCall(DMPlexGetClosureIndices(dmc, csection, globalCSection, coarseCells[ccell].index, PETSC_FALSE, &numCIndices, &cindices, NULL, NULL));
3105bd041c0cSMatthew G. Knepley         /* Transform points from real space to coarse reference space */
31069566063dSJacob Faibussowitsch         PetscCall(DMPlexComputeCellGeometryFEM(dmc, coarseCells[ccell].index, NULL, v0c, Jc, invJc, &detJc));
3107bd041c0cSMatthew G. Knepley         for (d = 0; d < dim; ++d) pVReal[d] = PetscRealPart(pV[ccell * dim + d]);
3108c330f8ffSToby Isaac         CoordinatesRealToRef(dim, dim, xi0, v0c, invJc, pVReal, x);
3109bd041c0cSMatthew G. Knepley 
3110bd041c0cSMatthew G. Knepley         if (id == PETSCFE_CLASSID) {
3111bd041c0cSMatthew G. Knepley           PetscFE fe = (PetscFE)obj;
3112bd041c0cSMatthew G. Knepley 
3113bd041c0cSMatthew G. Knepley           /* Evaluate coarse basis on contained point */
31149566063dSJacob Faibussowitsch           PetscCall(PetscFEGetDimension(fe, &cpdim));
31159566063dSJacob Faibussowitsch           PetscCall(PetscFEComputeTabulation(fe, 1, x, 0, T));
3116bd041c0cSMatthew G. Knepley           /* Get elemMat entries by multiplying by weight */
3117bd041c0cSMatthew G. Knepley           for (i = 0; i < numFIndices; ++i) {
31189566063dSJacob Faibussowitsch             PetscCall(PetscArrayzero(elemMat, cpdim));
3119bd041c0cSMatthew G. Knepley             for (j = 0; j < cpdim; ++j) {
3120ef0bb6c7SMatthew G. Knepley               for (c = 0; c < Nc; ++c) elemMat[j] += T->T[0][j * Nc + c] * Tfine->T[0][(ccell * numFIndices + i) * Nc + c] * qweights[ccell * Nc + c] * detJ;
3121bd041c0cSMatthew G. Knepley             }
3122bd041c0cSMatthew G. Knepley             /* Update interpolator */
31239566063dSJacob Faibussowitsch             if (mesh->printFEM > 1) PetscCall(DMPrintCellMatrix(cell, name, 1, numCIndices, elemMat));
312463a3b9bcSJacob Faibussowitsch             PetscCheck(numCIndices == cpdim, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Number of element matrix columns %" PetscInt_FMT " != %" PetscInt_FMT, numCIndices, cpdim);
31259566063dSJacob Faibussowitsch             PetscCall(MatSetValues(mass, 1, &findices[i], numCIndices, cindices, elemMat, ADD_VALUES));
3126bd041c0cSMatthew G. Knepley           }
3127bd041c0cSMatthew G. Knepley         } else {
3128bd041c0cSMatthew G. Knepley           cpdim = 1;
3129bd041c0cSMatthew G. Knepley           for (i = 0; i < numFIndices; ++i) {
31309566063dSJacob Faibussowitsch             PetscCall(PetscArrayzero(elemMat, cpdim));
3131bd041c0cSMatthew G. Knepley             for (j = 0; j < cpdim; ++j) {
3132bd041c0cSMatthew G. Knepley               for (c = 0; c < Nc; ++c) elemMat[j] += 1.0 * 1.0 * qweights[ccell * Nc + c] * detJ;
3133bd041c0cSMatthew G. Knepley             }
3134bd041c0cSMatthew G. Knepley             /* Update interpolator */
31359566063dSJacob Faibussowitsch             if (mesh->printFEM > 1) PetscCall(DMPrintCellMatrix(cell, name, 1, numCIndices, elemMat));
313663a3b9bcSJacob Faibussowitsch             PetscCall(PetscPrintf(PETSC_COMM_SELF, "Nq: %" PetscInt_FMT " %" PetscInt_FMT " Nf: %" PetscInt_FMT " %" PetscInt_FMT " Nc: %" PetscInt_FMT " %" PetscInt_FMT "\n", ccell, Nq, i, numFIndices, j, numCIndices));
313763a3b9bcSJacob Faibussowitsch             PetscCheck(numCIndices == cpdim, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Number of element matrix columns %" PetscInt_FMT " != %" PetscInt_FMT, numCIndices, cpdim);
31389566063dSJacob Faibussowitsch             PetscCall(MatSetValues(mass, 1, &findices[i], numCIndices, cindices, elemMat, ADD_VALUES));
3139bd041c0cSMatthew G. Knepley           }
3140bd041c0cSMatthew G. Knepley         }
31419566063dSJacob Faibussowitsch         PetscCall(DMPlexRestoreClosureIndices(dmc, csection, globalCSection, coarseCells[ccell].index, PETSC_FALSE, &numCIndices, &cindices, NULL, NULL));
3142bd041c0cSMatthew G. Knepley       }
31439566063dSJacob Faibussowitsch       PetscCall(VecRestoreArray(pointVec, &pV));
31449566063dSJacob Faibussowitsch       PetscCall(PetscSFDestroy(&coarseCellSF));
31459566063dSJacob Faibussowitsch       PetscCall(VecDestroy(&pointVec));
31469566063dSJacob Faibussowitsch       PetscCall(DMPlexRestoreClosureIndices(dmf, fsection, globalFSection, cell, PETSC_FALSE, &numFIndices, &findices, NULL, NULL));
3147bd041c0cSMatthew G. Knepley     }
31489566063dSJacob Faibussowitsch     if (id == PETSCFE_CLASSID) PetscCall(PetscTabulationDestroy(&T));
3149bd041c0cSMatthew G. Knepley   }
31509566063dSJacob Faibussowitsch   PetscCall(PetscFree3(v0, J, invJ));
31519566063dSJacob Faibussowitsch   PetscCall(PetscFree3(v0c, Jc, invJc));
31529566063dSJacob Faibussowitsch   PetscCall(PetscFree(elemMat));
31539566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(mass, MAT_FINAL_ASSEMBLY));
31549566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(mass, MAT_FINAL_ASSEMBLY));
31553ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3156bd041c0cSMatthew G. Knepley }
3157bd041c0cSMatthew G. Knepley 
3158bd041c0cSMatthew G. Knepley /*@
315946fa42a0SMatthew G. Knepley   DMPlexComputeInjectorFEM - Compute a mapping from coarse unknowns to fine unknowns
316046fa42a0SMatthew G. Knepley 
316146fa42a0SMatthew G. Knepley   Input Parameters:
316246fa42a0SMatthew G. Knepley + dmc  - The coarse mesh
316346fa42a0SMatthew G. Knepley - dmf  - The fine mesh
316446fa42a0SMatthew G. Knepley - user - The user context
316546fa42a0SMatthew G. Knepley 
316646fa42a0SMatthew G. Knepley   Output Parameter:
316746fa42a0SMatthew G. Knepley . sc   - The mapping
316846fa42a0SMatthew G. Knepley 
316946fa42a0SMatthew G. Knepley   Level: developer
317046fa42a0SMatthew G. Knepley 
3171a1cb98faSBarry Smith .seealso: [](chapter_unstructured), `DM`, `DMPLEX`, `DMPlexComputeInterpolatorNested()`, `DMPlexComputeJacobianFEM()`
317246fa42a0SMatthew G. Knepley @*/
3173d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeInjectorFEM(DM dmc, DM dmf, VecScatter *sc, void *user)
3174d71ae5a4SJacob Faibussowitsch {
3175e9d4ef1bSMatthew G. Knepley   PetscDS      prob;
31767c927364SMatthew G. Knepley   PetscFE     *feRef;
317797c42addSMatthew G. Knepley   PetscFV     *fvRef;
31787c927364SMatthew G. Knepley   Vec          fv, cv;
31797c927364SMatthew G. Knepley   IS           fis, cis;
31807c927364SMatthew G. Knepley   PetscSection fsection, fglobalSection, csection, cglobalSection;
31817c927364SMatthew G. Knepley   PetscInt    *cmap, *cellCIndices, *cellFIndices, *cindices, *findices;
3182485ad865SMatthew G. Knepley   PetscInt     cTotDim, fTotDim = 0, Nf, f, field, cStart, cEnd, c, dim, d, startC, endC, offsetC, offsetF, m;
31836f3d3cbcSMatthew G. Knepley   PetscBool   *needAvg;
31847c927364SMatthew G. Knepley 
31857c927364SMatthew G. Knepley   PetscFunctionBegin;
31869566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(DMPLEX_InjectorFEM, dmc, dmf, 0, 0));
31879566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dmf, &dim));
31889566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dmf, &fsection));
31899566063dSJacob Faibussowitsch   PetscCall(DMGetGlobalSection(dmf, &fglobalSection));
31909566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dmc, &csection));
31919566063dSJacob Faibussowitsch   PetscCall(DMGetGlobalSection(dmc, &cglobalSection));
31929566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetNumFields(fsection, &Nf));
31939566063dSJacob Faibussowitsch   PetscCall(DMPlexGetSimplexOrBoxCells(dmc, 0, &cStart, &cEnd));
31949566063dSJacob Faibussowitsch   PetscCall(DMGetDS(dmc, &prob));
31959566063dSJacob Faibussowitsch   PetscCall(PetscCalloc3(Nf, &feRef, Nf, &fvRef, Nf, &needAvg));
31967c927364SMatthew G. Knepley   for (f = 0; f < Nf; ++f) {
319797c42addSMatthew G. Knepley     PetscObject  obj;
319897c42addSMatthew G. Knepley     PetscClassId id;
3199aa7890ccSMatthew G. Knepley     PetscInt     fNb = 0, Nc = 0;
32007c927364SMatthew G. Knepley 
32019566063dSJacob Faibussowitsch     PetscCall(PetscDSGetDiscretization(prob, f, &obj));
32029566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetClassId(obj, &id));
320397c42addSMatthew G. Knepley     if (id == PETSCFE_CLASSID) {
320497c42addSMatthew G. Knepley       PetscFE    fe = (PetscFE)obj;
32056f3d3cbcSMatthew G. Knepley       PetscSpace sp;
32069b2fc754SMatthew G. Knepley       PetscInt   maxDegree;
320797c42addSMatthew G. Knepley 
32089566063dSJacob Faibussowitsch       PetscCall(PetscFERefine(fe, &feRef[f]));
32099566063dSJacob Faibussowitsch       PetscCall(PetscFEGetDimension(feRef[f], &fNb));
32109566063dSJacob Faibussowitsch       PetscCall(PetscFEGetNumComponents(fe, &Nc));
32119566063dSJacob Faibussowitsch       PetscCall(PetscFEGetBasisSpace(fe, &sp));
32129566063dSJacob Faibussowitsch       PetscCall(PetscSpaceGetDegree(sp, NULL, &maxDegree));
32139b2fc754SMatthew G. Knepley       if (!maxDegree) needAvg[f] = PETSC_TRUE;
321497c42addSMatthew G. Knepley     } else if (id == PETSCFV_CLASSID) {
321597c42addSMatthew G. Knepley       PetscFV        fv = (PetscFV)obj;
321697c42addSMatthew G. Knepley       PetscDualSpace Q;
321797c42addSMatthew G. Knepley 
32189566063dSJacob Faibussowitsch       PetscCall(PetscFVRefine(fv, &fvRef[f]));
32199566063dSJacob Faibussowitsch       PetscCall(PetscFVGetDualSpace(fvRef[f], &Q));
32209566063dSJacob Faibussowitsch       PetscCall(PetscDualSpaceGetDimension(Q, &fNb));
32219566063dSJacob Faibussowitsch       PetscCall(PetscFVGetNumComponents(fv, &Nc));
32226f3d3cbcSMatthew G. Knepley       needAvg[f] = PETSC_TRUE;
322397c42addSMatthew G. Knepley     }
3224d172c84bSMatthew G. Knepley     fTotDim += fNb;
32257c927364SMatthew G. Knepley   }
32269566063dSJacob Faibussowitsch   PetscCall(PetscDSGetTotalDimension(prob, &cTotDim));
32279566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(cTotDim, &cmap));
32287c927364SMatthew G. Knepley   for (field = 0, offsetC = 0, offsetF = 0; field < Nf; ++field) {
32297c927364SMatthew G. Knepley     PetscFE        feC;
323097c42addSMatthew G. Knepley     PetscFV        fvC;
32317c927364SMatthew G. Knepley     PetscDualSpace QF, QC;
3232d172c84bSMatthew G. Knepley     PetscInt       order = -1, NcF, NcC, fpdim, cpdim;
32337c927364SMatthew G. Knepley 
323497c42addSMatthew G. Knepley     if (feRef[field]) {
32359566063dSJacob Faibussowitsch       PetscCall(PetscDSGetDiscretization(prob, field, (PetscObject *)&feC));
32369566063dSJacob Faibussowitsch       PetscCall(PetscFEGetNumComponents(feC, &NcC));
32379566063dSJacob Faibussowitsch       PetscCall(PetscFEGetNumComponents(feRef[field], &NcF));
32389566063dSJacob Faibussowitsch       PetscCall(PetscFEGetDualSpace(feRef[field], &QF));
32399566063dSJacob Faibussowitsch       PetscCall(PetscDualSpaceGetOrder(QF, &order));
32409566063dSJacob Faibussowitsch       PetscCall(PetscDualSpaceGetDimension(QF, &fpdim));
32419566063dSJacob Faibussowitsch       PetscCall(PetscFEGetDualSpace(feC, &QC));
32429566063dSJacob Faibussowitsch       PetscCall(PetscDualSpaceGetDimension(QC, &cpdim));
324397c42addSMatthew G. Knepley     } else {
32449566063dSJacob Faibussowitsch       PetscCall(PetscDSGetDiscretization(prob, field, (PetscObject *)&fvC));
32459566063dSJacob Faibussowitsch       PetscCall(PetscFVGetNumComponents(fvC, &NcC));
32469566063dSJacob Faibussowitsch       PetscCall(PetscFVGetNumComponents(fvRef[field], &NcF));
32479566063dSJacob Faibussowitsch       PetscCall(PetscFVGetDualSpace(fvRef[field], &QF));
32489566063dSJacob Faibussowitsch       PetscCall(PetscDualSpaceGetDimension(QF, &fpdim));
32499566063dSJacob Faibussowitsch       PetscCall(PetscFVGetDualSpace(fvC, &QC));
32509566063dSJacob Faibussowitsch       PetscCall(PetscDualSpaceGetDimension(QC, &cpdim));
325197c42addSMatthew G. Knepley     }
325263a3b9bcSJacob Faibussowitsch     PetscCheck(NcF == NcC, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of components in fine space field %" PetscInt_FMT " does not match coarse field %" PetscInt_FMT, NcF, NcC);
32537c927364SMatthew G. Knepley     for (c = 0; c < cpdim; ++c) {
32547c927364SMatthew G. Knepley       PetscQuadrature  cfunc;
3255d172c84bSMatthew G. Knepley       const PetscReal *cqpoints, *cqweights;
3256d172c84bSMatthew G. Knepley       PetscInt         NqcC, NpC;
325797c42addSMatthew G. Knepley       PetscBool        found = PETSC_FALSE;
32587c927364SMatthew G. Knepley 
32599566063dSJacob Faibussowitsch       PetscCall(PetscDualSpaceGetFunctional(QC, c, &cfunc));
32609566063dSJacob Faibussowitsch       PetscCall(PetscQuadratureGetData(cfunc, NULL, &NqcC, &NpC, &cqpoints, &cqweights));
326163a3b9bcSJacob Faibussowitsch       PetscCheck(NqcC == NcC, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of quadrature components %" PetscInt_FMT " must match number of field components %" PetscInt_FMT, NqcC, NcC);
32621dca8a05SBarry Smith       PetscCheck(NpC == 1 || !feRef[field], PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Do not know how to do injection for moments");
32637c927364SMatthew G. Knepley       for (f = 0; f < fpdim; ++f) {
32647c927364SMatthew G. Knepley         PetscQuadrature  ffunc;
3265d172c84bSMatthew G. Knepley         const PetscReal *fqpoints, *fqweights;
32667c927364SMatthew G. Knepley         PetscReal        sum = 0.0;
3267d172c84bSMatthew G. Knepley         PetscInt         NqcF, NpF;
32687c927364SMatthew G. Knepley 
32699566063dSJacob Faibussowitsch         PetscCall(PetscDualSpaceGetFunctional(QF, f, &ffunc));
32709566063dSJacob Faibussowitsch         PetscCall(PetscQuadratureGetData(ffunc, NULL, &NqcF, &NpF, &fqpoints, &fqweights));
327163a3b9bcSJacob Faibussowitsch         PetscCheck(NqcF == NcF, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of quadrature components %" PetscInt_FMT " must match number of field components %" PetscInt_FMT, NqcF, NcF);
32727c927364SMatthew G. Knepley         if (NpC != NpF) continue;
32737c927364SMatthew G. Knepley         for (d = 0; d < dim; ++d) sum += PetscAbsReal(cqpoints[d] - fqpoints[d]);
32747c927364SMatthew G. Knepley         if (sum > 1.0e-9) continue;
3275d172c84bSMatthew G. Knepley         for (d = 0; d < NcC; ++d) sum += PetscAbsReal(cqweights[d] * fqweights[d]);
3276d172c84bSMatthew G. Knepley         if (sum < 1.0e-9) continue;
3277d172c84bSMatthew G. Knepley         cmap[offsetC + c] = offsetF + f;
327897c42addSMatthew G. Knepley         found             = PETSC_TRUE;
32797c927364SMatthew G. Knepley         break;
32807c927364SMatthew G. Knepley       }
328197c42addSMatthew G. Knepley       if (!found) {
328297c42addSMatthew G. Knepley         /* TODO We really want the average here, but some asshole put VecScatter in the interface */
3283d172c84bSMatthew G. Knepley         if (fvRef[field] || (feRef[field] && order == 0)) {
3284d172c84bSMatthew G. Knepley           cmap[offsetC + c] = offsetF + 0;
328597c42addSMatthew G. Knepley         } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Could not locate matching functional for injection");
328697c42addSMatthew G. Knepley       }
32877c927364SMatthew G. Knepley     }
3288d172c84bSMatthew G. Knepley     offsetC += cpdim;
3289d172c84bSMatthew G. Knepley     offsetF += fpdim;
32907c927364SMatthew G. Knepley   }
32919371c9d4SSatish Balay   for (f = 0; f < Nf; ++f) {
32929371c9d4SSatish Balay     PetscCall(PetscFEDestroy(&feRef[f]));
32939371c9d4SSatish Balay     PetscCall(PetscFVDestroy(&fvRef[f]));
32949371c9d4SSatish Balay   }
32959566063dSJacob Faibussowitsch   PetscCall(PetscFree3(feRef, fvRef, needAvg));
32967c927364SMatthew G. Knepley 
32979566063dSJacob Faibussowitsch   PetscCall(DMGetGlobalVector(dmf, &fv));
32989566063dSJacob Faibussowitsch   PetscCall(DMGetGlobalVector(dmc, &cv));
32999566063dSJacob Faibussowitsch   PetscCall(VecGetOwnershipRange(cv, &startC, &endC));
33009566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetConstrainedStorageSize(cglobalSection, &m));
33019566063dSJacob Faibussowitsch   PetscCall(PetscMalloc2(cTotDim, &cellCIndices, fTotDim, &cellFIndices));
33029566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(m, &cindices));
33039566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(m, &findices));
33047c927364SMatthew G. Knepley   for (d = 0; d < m; ++d) cindices[d] = findices[d] = -1;
33057c927364SMatthew G. Knepley   for (c = cStart; c < cEnd; ++c) {
33069566063dSJacob Faibussowitsch     PetscCall(DMPlexMatGetClosureIndicesRefined(dmf, fsection, fglobalSection, dmc, csection, cglobalSection, c, cellCIndices, cellFIndices));
33077c927364SMatthew G. Knepley     for (d = 0; d < cTotDim; ++d) {
33080bd915a7SMatthew G. Knepley       if ((cellCIndices[d] < startC) || (cellCIndices[d] >= endC)) continue;
330963a3b9bcSJacob Faibussowitsch       PetscCheck(!(findices[cellCIndices[d] - startC] >= 0) || !(findices[cellCIndices[d] - startC] != cellFIndices[cmap[d]]), PETSC_COMM_SELF, PETSC_ERR_PLIB, "Coarse dof %" PetscInt_FMT " maps to both %" PetscInt_FMT " and %" PetscInt_FMT, cindices[cellCIndices[d] - startC], findices[cellCIndices[d] - startC], cellFIndices[cmap[d]]);
33107c927364SMatthew G. Knepley       cindices[cellCIndices[d] - startC] = cellCIndices[d];
33117c927364SMatthew G. Knepley       findices[cellCIndices[d] - startC] = cellFIndices[cmap[d]];
33127c927364SMatthew G. Knepley     }
33137c927364SMatthew G. Knepley   }
33149566063dSJacob Faibussowitsch   PetscCall(PetscFree(cmap));
33159566063dSJacob Faibussowitsch   PetscCall(PetscFree2(cellCIndices, cellFIndices));
33167c927364SMatthew G. Knepley 
33179566063dSJacob Faibussowitsch   PetscCall(ISCreateGeneral(PETSC_COMM_SELF, m, cindices, PETSC_OWN_POINTER, &cis));
33189566063dSJacob Faibussowitsch   PetscCall(ISCreateGeneral(PETSC_COMM_SELF, m, findices, PETSC_OWN_POINTER, &fis));
33199566063dSJacob Faibussowitsch   PetscCall(VecScatterCreate(cv, cis, fv, fis, sc));
33209566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&cis));
33219566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&fis));
33229566063dSJacob Faibussowitsch   PetscCall(DMRestoreGlobalVector(dmf, &fv));
33239566063dSJacob Faibussowitsch   PetscCall(DMRestoreGlobalVector(dmc, &cv));
33249566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(DMPLEX_InjectorFEM, dmc, dmf, 0, 0));
33253ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3326cb1e1211SMatthew G Knepley }
3327a1cf66bbSMatthew G. Knepley 
33282f856554SMatthew G. Knepley /*@C
33292f856554SMatthew G. Knepley   DMPlexGetCellFields - Retrieve the field values values for a chunk of cells
33302f856554SMatthew G. Knepley 
33312f856554SMatthew G. Knepley   Input Parameters:
3332a1cb98faSBarry Smith + dm     - The `DM`
33332f856554SMatthew G. Knepley . cellIS - The cells to include
33342f856554SMatthew G. Knepley . locX   - A local vector with the solution fields
33352f856554SMatthew G. Knepley . locX_t - A local vector with solution field time derivatives, or NULL
33362f856554SMatthew G. Knepley - locA   - A local vector with auxiliary fields, or NULL
33372f856554SMatthew G. Knepley 
33382f856554SMatthew G. Knepley   Output Parameters:
33392f856554SMatthew G. Knepley + u   - The field coefficients
33402f856554SMatthew G. Knepley . u_t - The fields derivative coefficients
33412f856554SMatthew G. Knepley - a   - The auxiliary field coefficients
33422f856554SMatthew G. Knepley 
33432f856554SMatthew G. Knepley   Level: developer
33442f856554SMatthew G. Knepley 
3345a1cb98faSBarry Smith .seealso: [](chapter_unstructured), `DM`, `DMPLEX`, `DMPlexGetFaceFields()`
33462f856554SMatthew G. Knepley @*/
3347d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexGetCellFields(DM dm, IS cellIS, Vec locX, Vec locX_t, Vec locA, PetscScalar **u, PetscScalar **u_t, PetscScalar **a)
3348d71ae5a4SJacob Faibussowitsch {
33492f856554SMatthew G. Knepley   DM              plex, plexA = NULL;
3350a6e0b375SMatthew G. Knepley   DMEnclosureType encAux;
33512f856554SMatthew G. Knepley   PetscSection    section, sectionAux;
33522f856554SMatthew G. Knepley   PetscDS         prob;
33532f856554SMatthew G. Knepley   const PetscInt *cells;
33542f856554SMatthew G. Knepley   PetscInt        cStart, cEnd, numCells, totDim, totDimAux, c;
33552f856554SMatthew G. Knepley 
33562f856554SMatthew G. Knepley   PetscFunctionBegin;
33572f856554SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
3358064a246eSJacob Faibussowitsch   PetscValidHeaderSpecific(locX, VEC_CLASSID, 3);
3359ad540459SPierre Jolivet   if (locX_t) PetscValidHeaderSpecific(locX_t, VEC_CLASSID, 4);
3360ad540459SPierre Jolivet   if (locA) PetscValidHeaderSpecific(locA, VEC_CLASSID, 5);
3361064a246eSJacob Faibussowitsch   PetscValidPointer(u, 6);
3362064a246eSJacob Faibussowitsch   PetscValidPointer(u_t, 7);
3363064a246eSJacob Faibussowitsch   PetscValidPointer(a, 8);
33649566063dSJacob Faibussowitsch   PetscCall(DMPlexConvertPlex(dm, &plex, PETSC_FALSE));
33659566063dSJacob Faibussowitsch   PetscCall(ISGetPointRange(cellIS, &cStart, &cEnd, &cells));
33669566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dm, &section));
336707218a29SMatthew G. Knepley   PetscCall(DMGetCellDS(dm, cells ? cells[cStart] : cStart, &prob, NULL));
33689566063dSJacob Faibussowitsch   PetscCall(PetscDSGetTotalDimension(prob, &totDim));
33692f856554SMatthew G. Knepley   if (locA) {
33702f856554SMatthew G. Knepley     DM      dmAux;
33712f856554SMatthew G. Knepley     PetscDS probAux;
33722f856554SMatthew G. Knepley 
33739566063dSJacob Faibussowitsch     PetscCall(VecGetDM(locA, &dmAux));
33749566063dSJacob Faibussowitsch     PetscCall(DMGetEnclosureRelation(dmAux, dm, &encAux));
33759566063dSJacob Faibussowitsch     PetscCall(DMPlexConvertPlex(dmAux, &plexA, PETSC_FALSE));
33769566063dSJacob Faibussowitsch     PetscCall(DMGetLocalSection(dmAux, &sectionAux));
33779566063dSJacob Faibussowitsch     PetscCall(DMGetDS(dmAux, &probAux));
33789566063dSJacob Faibussowitsch     PetscCall(PetscDSGetTotalDimension(probAux, &totDimAux));
33792f856554SMatthew G. Knepley   }
33802f856554SMatthew G. Knepley   numCells = cEnd - cStart;
33819566063dSJacob Faibussowitsch   PetscCall(DMGetWorkArray(dm, numCells * totDim, MPIU_SCALAR, u));
33829371c9d4SSatish Balay   if (locX_t) PetscCall(DMGetWorkArray(dm, numCells * totDim, MPIU_SCALAR, u_t));
3383ad540459SPierre Jolivet   else *u_t = NULL;
33849371c9d4SSatish Balay   if (locA) PetscCall(DMGetWorkArray(dm, numCells * totDimAux, MPIU_SCALAR, a));
3385ad540459SPierre Jolivet   else *a = NULL;
33862f856554SMatthew G. Knepley   for (c = cStart; c < cEnd; ++c) {
33872f856554SMatthew G. Knepley     const PetscInt cell = cells ? cells[c] : c;
33882f856554SMatthew G. Knepley     const PetscInt cind = c - cStart;
33892f856554SMatthew G. Knepley     PetscScalar   *x = NULL, *x_t = NULL, *ul = *u, *ul_t = *u_t, *al = *a;
33902f856554SMatthew G. Knepley     PetscInt       i;
33912f856554SMatthew G. Knepley 
33929566063dSJacob Faibussowitsch     PetscCall(DMPlexVecGetClosure(plex, section, locX, cell, NULL, &x));
33932f856554SMatthew G. Knepley     for (i = 0; i < totDim; ++i) ul[cind * totDim + i] = x[i];
33949566063dSJacob Faibussowitsch     PetscCall(DMPlexVecRestoreClosure(plex, section, locX, cell, NULL, &x));
33952f856554SMatthew G. Knepley     if (locX_t) {
33969566063dSJacob Faibussowitsch       PetscCall(DMPlexVecGetClosure(plex, section, locX_t, cell, NULL, &x_t));
33972f856554SMatthew G. Knepley       for (i = 0; i < totDim; ++i) ul_t[cind * totDim + i] = x_t[i];
33989566063dSJacob Faibussowitsch       PetscCall(DMPlexVecRestoreClosure(plex, section, locX_t, cell, NULL, &x_t));
33992f856554SMatthew G. Knepley     }
34002f856554SMatthew G. Knepley     if (locA) {
34012f856554SMatthew G. Knepley       PetscInt subcell;
34029566063dSJacob Faibussowitsch       PetscCall(DMGetEnclosurePoint(plexA, dm, encAux, cell, &subcell));
34039566063dSJacob Faibussowitsch       PetscCall(DMPlexVecGetClosure(plexA, sectionAux, locA, subcell, NULL, &x));
34042f856554SMatthew G. Knepley       for (i = 0; i < totDimAux; ++i) al[cind * totDimAux + i] = x[i];
34059566063dSJacob Faibussowitsch       PetscCall(DMPlexVecRestoreClosure(plexA, sectionAux, locA, subcell, NULL, &x));
34062f856554SMatthew G. Knepley     }
34072f856554SMatthew G. Knepley   }
34089566063dSJacob Faibussowitsch   PetscCall(DMDestroy(&plex));
34099566063dSJacob Faibussowitsch   if (locA) PetscCall(DMDestroy(&plexA));
34109566063dSJacob Faibussowitsch   PetscCall(ISRestorePointRange(cellIS, &cStart, &cEnd, &cells));
34113ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
34122f856554SMatthew G. Knepley }
34132f856554SMatthew G. Knepley 
34142f856554SMatthew G. Knepley /*@C
34152f856554SMatthew G. Knepley   DMPlexRestoreCellFields - Restore the field values values for a chunk of cells
34162f856554SMatthew G. Knepley 
34172f856554SMatthew G. Knepley   Input Parameters:
3418a1cb98faSBarry Smith + dm     - The `DM`
34192f856554SMatthew G. Knepley . cellIS - The cells to include
34202f856554SMatthew G. Knepley . locX   - A local vector with the solution fields
34212f856554SMatthew G. Knepley . locX_t - A local vector with solution field time derivatives, or NULL
34222f856554SMatthew G. Knepley - locA   - A local vector with auxiliary fields, or NULL
34232f856554SMatthew G. Knepley 
34242f856554SMatthew G. Knepley   Output Parameters:
34252f856554SMatthew G. Knepley + u   - The field coefficients
34262f856554SMatthew G. Knepley . u_t - The fields derivative coefficients
34272f856554SMatthew G. Knepley - a   - The auxiliary field coefficients
34282f856554SMatthew G. Knepley 
34292f856554SMatthew G. Knepley   Level: developer
34302f856554SMatthew G. Knepley 
3431a1cb98faSBarry Smith .seealso: [](chapter_unstructured), `DM`, `DMPLEX`, `DMPlexGetFaceFields()`
34322f856554SMatthew G. Knepley @*/
3433d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexRestoreCellFields(DM dm, IS cellIS, Vec locX, Vec locX_t, Vec locA, PetscScalar **u, PetscScalar **u_t, PetscScalar **a)
3434d71ae5a4SJacob Faibussowitsch {
34352f856554SMatthew G. Knepley   PetscFunctionBegin;
34369566063dSJacob Faibussowitsch   PetscCall(DMRestoreWorkArray(dm, 0, MPIU_SCALAR, u));
34379566063dSJacob Faibussowitsch   if (locX_t) PetscCall(DMRestoreWorkArray(dm, 0, MPIU_SCALAR, u_t));
34389566063dSJacob Faibussowitsch   if (locA) PetscCall(DMRestoreWorkArray(dm, 0, MPIU_SCALAR, a));
34393ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
34402f856554SMatthew G. Knepley }
34412f856554SMatthew G. Knepley 
344207218a29SMatthew G. Knepley PetscErrorCode DMPlexGetHybridCellFields(DM dm, IS cellIS, Vec locX, Vec locX_t, Vec locA, PetscScalar **u, PetscScalar **u_t, PetscScalar **a)
3443d71ae5a4SJacob Faibussowitsch {
344407218a29SMatthew G. Knepley   DM              plex, plexA = NULL;
344507218a29SMatthew G. Knepley   DMEnclosureType encAux;
344607218a29SMatthew G. Knepley   PetscSection    section, sectionAux;
344707218a29SMatthew G. Knepley   PetscDS         ds, dsIn;
34486528b96dSMatthew G. Knepley   const PetscInt *cells;
344907218a29SMatthew G. Knepley   PetscInt        cStart, cEnd, numCells, c, totDim, totDimAux, Nf, f;
34506528b96dSMatthew G. Knepley 
34516528b96dSMatthew G. Knepley   PetscFunctionBegin;
345207218a29SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
345307218a29SMatthew G. Knepley   PetscValidHeaderSpecific(cellIS, IS_CLASSID, 2);
345407218a29SMatthew G. Knepley   PetscValidHeaderSpecific(locX, VEC_CLASSID, 3);
345507218a29SMatthew G. Knepley   if (locX_t) { PetscValidHeaderSpecific(locX_t, VEC_CLASSID, 4); }
345607218a29SMatthew G. Knepley   if (locA) { PetscValidHeaderSpecific(locA, VEC_CLASSID, 5); }
345707218a29SMatthew G. Knepley   PetscValidPointer(u, 6);
345807218a29SMatthew G. Knepley   PetscValidPointer(u_t, 7);
345907218a29SMatthew G. Knepley   PetscValidPointer(a, 8);
346007218a29SMatthew G. Knepley   PetscCall(ISGetPointRange(cellIS, &cStart, &cEnd, &cells));
346107218a29SMatthew G. Knepley   numCells = cEnd - cStart;
346207218a29SMatthew G. Knepley   PetscCall(DMPlexConvertPlex(dm, &plex, PETSC_FALSE));
346307218a29SMatthew G. Knepley   PetscCall(DMGetLocalSection(dm, &section));
346407218a29SMatthew G. Knepley   PetscCall(DMGetCellDS(dm, cells ? cells[cStart] : cStart, &ds, &dsIn));
346507218a29SMatthew G. Knepley   PetscCall(PetscDSGetNumFields(dsIn, &Nf));
346607218a29SMatthew G. Knepley   PetscCall(PetscDSGetTotalDimension(dsIn, &totDim));
346707218a29SMatthew G. Knepley   if (locA) {
346807218a29SMatthew G. Knepley     DM      dmAux;
346907218a29SMatthew G. Knepley     PetscDS probAux;
347007218a29SMatthew G. Knepley 
347107218a29SMatthew G. Knepley     PetscCall(VecGetDM(locA, &dmAux));
347207218a29SMatthew G. Knepley     PetscCall(DMGetEnclosureRelation(dmAux, dm, &encAux));
347307218a29SMatthew G. Knepley     PetscCall(DMPlexConvertPlex(dmAux, &plexA, PETSC_FALSE));
347407218a29SMatthew G. Knepley     PetscCall(DMGetLocalSection(dmAux, &sectionAux));
347507218a29SMatthew G. Knepley     PetscCall(DMGetDS(dmAux, &probAux));
347607218a29SMatthew G. Knepley     PetscCall(PetscDSGetTotalDimension(probAux, &totDimAux));
347707218a29SMatthew G. Knepley   }
347807218a29SMatthew G. Knepley   PetscCall(DMGetWorkArray(dm, numCells * totDim, MPIU_SCALAR, u));
347907218a29SMatthew G. Knepley   if (locX_t) PetscCall(DMGetWorkArray(dm, numCells * totDim, MPIU_SCALAR, u_t));
348007218a29SMatthew G. Knepley   else {
348107218a29SMatthew G. Knepley     *u_t = NULL;
348207218a29SMatthew G. Knepley   }
348307218a29SMatthew G. Knepley   if (locA) PetscCall(DMGetWorkArray(dm, numCells * totDimAux, MPIU_SCALAR, a));
348407218a29SMatthew G. Knepley   else {
348507218a29SMatthew G. Knepley     *a = NULL;
348607218a29SMatthew G. Knepley   }
348707218a29SMatthew G. Knepley   // Loop over cohesive cells
348807218a29SMatthew G. Knepley   for (c = cStart; c < cEnd; ++c) {
348907218a29SMatthew G. Knepley     const PetscInt  cell = cells ? cells[c] : c;
349007218a29SMatthew G. Knepley     const PetscInt  cind = c - cStart;
349107218a29SMatthew G. Knepley     PetscScalar    *xf = NULL, *xc = NULL, *x = NULL, *x_t = NULL, *ul = &(*u)[cind * totDim];
349207218a29SMatthew G. Knepley     const PetscInt *cone, *ornt;
349307218a29SMatthew G. Knepley     PetscInt        Nx = 0, Nxf, s;
349407218a29SMatthew G. Knepley 
349507218a29SMatthew G. Knepley     PetscCall(DMPlexGetCone(dm, cell, &cone));
349607218a29SMatthew G. Knepley     PetscCall(DMPlexGetConeOrientation(dm, cell, &ornt));
349707218a29SMatthew G. Knepley     // Put in cohesive unknowns
349807218a29SMatthew G. Knepley     PetscCall(DMPlexVecGetClosure(plex, section, locX, cell, &Nxf, &xf));
349907218a29SMatthew G. Knepley     for (f = 0; f < Nf; ++f) {
350007218a29SMatthew G. Knepley       PetscInt  fdofIn, foff, foffIn;
350107218a29SMatthew G. Knepley       PetscBool cohesive;
350207218a29SMatthew G. Knepley 
350307218a29SMatthew G. Knepley       PetscCall(PetscDSGetCohesive(dsIn, f, &cohesive));
350407218a29SMatthew G. Knepley       if (!cohesive) continue;
350507218a29SMatthew G. Knepley       PetscCall(PetscDSGetFieldSize(dsIn, f, &fdofIn));
350607218a29SMatthew G. Knepley       PetscCall(PetscDSGetFieldOffsetCohesive(ds, f, &foff));
350707218a29SMatthew G. Knepley       PetscCall(PetscDSGetFieldOffsetCohesive(dsIn, f, &foffIn));
350807218a29SMatthew G. Knepley       for (PetscInt i = 0; i < fdofIn; ++i) ul[foffIn + i] = xf[foff + i];
350907218a29SMatthew G. Knepley       Nx += fdofIn;
351007218a29SMatthew G. Knepley     }
351107218a29SMatthew G. Knepley     PetscCall(DMPlexVecRestoreClosure(plex, section, locX, cell, &Nxf, &xf));
351207218a29SMatthew G. Knepley     // Loop over sides of surface
351307218a29SMatthew G. Knepley     for (s = 0; s < 2; ++s) {
351407218a29SMatthew G. Knepley       const PetscInt *support;
351507218a29SMatthew G. Knepley       const PetscInt  face = cone[s];
351607218a29SMatthew G. Knepley       PetscInt        ssize, ncell, Nxc;
351707218a29SMatthew G. Knepley 
351807218a29SMatthew G. Knepley       // I don't think I need the face to have 0 orientation in the hybrid cell
351907218a29SMatthew G. Knepley       //PetscCheck(!ornt[s], PETSC_COMM_SELF, PETSC_ERR_SUP, "Face %" PetscInt_FMT " in hybrid cell %" PetscInt_FMT " has orientation %" PetscInt_FMT " != 0", face, cell, ornt[s]);
352007218a29SMatthew G. Knepley       PetscCall(DMPlexGetSupport(dm, face, &support));
352107218a29SMatthew G. Knepley       PetscCall(DMPlexGetSupportSize(dm, face, &ssize));
352207218a29SMatthew G. Knepley       if (support[0] == cell) ncell = support[1];
352307218a29SMatthew G. Knepley       else if (support[1] == cell) ncell = support[0];
352407218a29SMatthew G. Knepley       else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Face %" PetscInt_FMT " does not have cell %" PetscInt_FMT " in its support", face, cell);
352507218a29SMatthew G. Knepley       // Get closure of both face and cell, stick in cell for normal fields and face for cohesive fields
352607218a29SMatthew G. Knepley       PetscCall(DMPlexVecGetClosure(plex, section, locX, ncell, &Nxc, &xc));
352707218a29SMatthew G. Knepley       for (f = 0; f < Nf; ++f) {
352807218a29SMatthew G. Knepley         PetscInt  fdofIn, foffIn;
352907218a29SMatthew G. Knepley         PetscBool cohesive;
353007218a29SMatthew G. Knepley 
353107218a29SMatthew G. Knepley         PetscCall(PetscDSGetCohesive(dsIn, f, &cohesive));
353207218a29SMatthew G. Knepley         if (cohesive) continue;
353307218a29SMatthew G. Knepley         PetscCall(PetscDSGetFieldSize(dsIn, f, &fdofIn));
353407218a29SMatthew G. Knepley         PetscCall(PetscDSGetFieldOffsetCohesive(dsIn, f, &foffIn));
353507218a29SMatthew G. Knepley         for (PetscInt i = 0; i < fdofIn; ++i) ul[foffIn + s * fdofIn + i] = xc[foffIn + i];
353607218a29SMatthew G. Knepley         Nx += fdofIn;
353707218a29SMatthew G. Knepley       }
353807218a29SMatthew G. Knepley       PetscCall(DMPlexVecRestoreClosure(plex, section, locX, ncell, &Nxc, &xc));
353907218a29SMatthew G. Knepley     }
354007218a29SMatthew G. Knepley     PetscCheck(Nx == totDim, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "Closure size %" PetscInt_FMT " for cell %" PetscInt_FMT " does not match DS size %" PetscInt_FMT, Nx, cell, totDim);
354107218a29SMatthew G. Knepley 
354207218a29SMatthew G. Knepley     if (locX_t) {
354307218a29SMatthew G. Knepley       PetscScalar *ul_t = &(*u_t)[cind * totDim];
354407218a29SMatthew G. Knepley 
354507218a29SMatthew G. Knepley       PetscCall(DMPlexVecGetClosure(plex, section, locX_t, cell, NULL, &x_t));
354607218a29SMatthew G. Knepley       for (PetscInt i = 0; i < totDim; ++i) ul_t[i] = x_t[i];
354707218a29SMatthew G. Knepley       PetscCall(DMPlexVecRestoreClosure(plex, section, locX_t, cell, NULL, &x_t));
354807218a29SMatthew G. Knepley     }
354907218a29SMatthew G. Knepley     if (locA) {
355007218a29SMatthew G. Knepley       PetscScalar *al = &(*a)[cind * totDimAux];
355107218a29SMatthew G. Knepley       PetscInt     subcell;
355207218a29SMatthew G. Knepley 
355307218a29SMatthew G. Knepley       PetscCall(DMGetEnclosurePoint(plexA, dm, encAux, cell, &subcell));
355407218a29SMatthew G. Knepley       PetscCall(DMPlexVecGetClosure(plexA, sectionAux, locA, subcell, &Nx, &x));
355507218a29SMatthew G. Knepley       PetscCheck(Nx == totDimAux, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "Closure size %" PetscInt_FMT " for subcell %" PetscInt_FMT "does not match DS size %" PetscInt_FMT, Nx, subcell, totDimAux);
355607218a29SMatthew G. Knepley       for (PetscInt i = 0; i < totDimAux; ++i) al[i] = x[i];
355707218a29SMatthew G. Knepley       PetscCall(DMPlexVecRestoreClosure(plexA, sectionAux, locA, subcell, &Nx, &x));
355807218a29SMatthew G. Knepley     }
355907218a29SMatthew G. Knepley   }
356007218a29SMatthew G. Knepley   PetscCall(DMDestroy(&plex));
356107218a29SMatthew G. Knepley   PetscCall(DMDestroy(&plexA));
356207218a29SMatthew G. Knepley   PetscCall(ISRestorePointRange(cellIS, &cStart, &cEnd, &cells));
356307218a29SMatthew G. Knepley   PetscFunctionReturn(PETSC_SUCCESS);
356407218a29SMatthew G. Knepley }
356507218a29SMatthew G. Knepley 
356607218a29SMatthew G. Knepley /*
3567*3e2b0218SMatthew G. Knepley   DMPlexGetHybridFields - Get the field values for the negative side (s = 0) and positive side (s = 1) of the interface
356807218a29SMatthew G. Knepley 
356907218a29SMatthew G. Knepley   Input Parameters:
357007218a29SMatthew G. Knepley + dm      - The full domain DM
357107218a29SMatthew G. Knepley . dmX     - An array of DM for the field, say an auxiliary DM, indexed by s
357207218a29SMatthew G. Knepley . dsX     - An array of PetscDS for the field, indexed by s
357307218a29SMatthew G. Knepley . cellIS  - The interface cells for which we want values
357407218a29SMatthew G. Knepley . locX    - An array of local vectors with the field values, indexed by s
357507218a29SMatthew G. Knepley - useCell - Flag to have values come from neighboring cell rather than endcap face
357607218a29SMatthew G. Knepley 
357707218a29SMatthew G. Knepley   Output Parameter:
357807218a29SMatthew G. Knepley . x       - An array of field values, indexed by s
357907218a29SMatthew G. Knepley 
358007218a29SMatthew G. Knepley   Note:
358176fbde31SPierre Jolivet   The arrays in `x` will be allocated using `DMGetWorkArray()`, and must be returned using `DMPlexRestoreHybridFields()`.
358207218a29SMatthew G. Knepley 
358307218a29SMatthew G. Knepley   Level: advanced
358407218a29SMatthew G. Knepley 
358576fbde31SPierre Jolivet .seealso: `DMPlexRestoreHybridFields()`, `DMGetWorkArray()`
358607218a29SMatthew G. Knepley */
358707218a29SMatthew G. Knepley static PetscErrorCode DMPlexGetHybridFields(DM dm, DM dmX[], PetscDS dsX[], IS cellIS, Vec locX[], PetscBool useCell, PetscScalar *x[])
358807218a29SMatthew G. Knepley {
358907218a29SMatthew G. Knepley   DM              plexX[2];
359007218a29SMatthew G. Knepley   DMEnclosureType encX[2];
359107218a29SMatthew G. Knepley   PetscSection    sectionX[2];
359207218a29SMatthew G. Knepley   const PetscInt *cells;
359307218a29SMatthew G. Knepley   PetscInt        cStart, cEnd, numCells, c, s, totDimX[2];
359407218a29SMatthew G. Knepley 
359507218a29SMatthew G. Knepley   PetscFunctionBegin;
359607218a29SMatthew G. Knepley   PetscValidPointer(locX, 5);
359707218a29SMatthew G. Knepley   if (!locX[0] || !locX[1]) PetscFunctionReturn(PETSC_SUCCESS);
359807218a29SMatthew G. Knepley   PetscValidPointer(dmX, 2);
359907218a29SMatthew G. Knepley   PetscValidPointer(dsX, 3);
360007218a29SMatthew G. Knepley   PetscValidHeaderSpecific(cellIS, IS_CLASSID, 4);
360107218a29SMatthew G. Knepley   PetscValidPointer(x, 7);
36029566063dSJacob Faibussowitsch   PetscCall(ISGetPointRange(cellIS, &cStart, &cEnd, &cells));
36036528b96dSMatthew G. Knepley   numCells = cEnd - cStart;
3604148442b3SMatthew G. Knepley   for (s = 0; s < 2; ++s) {
360507218a29SMatthew G. Knepley     PetscValidHeaderSpecific(dmX[s], DM_CLASSID, 2);
360607218a29SMatthew G. Knepley     PetscValidHeaderSpecific(dsX[s], PETSCDS_CLASSID, 3);
360707218a29SMatthew G. Knepley     PetscValidHeaderSpecific(locX[s], VEC_CLASSID, 5);
360807218a29SMatthew G. Knepley     PetscCall(DMPlexConvertPlex(dmX[s], &plexX[s], PETSC_FALSE));
360907218a29SMatthew G. Knepley     PetscCall(DMGetEnclosureRelation(dmX[s], dm, &encX[s]));
361007218a29SMatthew G. Knepley     PetscCall(DMGetLocalSection(dmX[s], &sectionX[s]));
361107218a29SMatthew G. Knepley     PetscCall(PetscDSGetTotalDimension(dsX[s], &totDimX[s]));
361207218a29SMatthew G. Knepley     PetscCall(DMGetWorkArray(dmX[s], numCells * totDimX[s], MPIU_SCALAR, &x[s]));
361304c51a94SMatthew G. Knepley   }
3614148442b3SMatthew G. Knepley   for (c = cStart; c < cEnd; ++c) {
36156528b96dSMatthew G. Knepley     const PetscInt  cell = cells ? cells[c] : c;
36166528b96dSMatthew G. Knepley     const PetscInt  cind = c - cStart;
36176528b96dSMatthew G. Knepley     const PetscInt *cone, *ornt;
36186528b96dSMatthew G. Knepley 
36199566063dSJacob Faibussowitsch     PetscCall(DMPlexGetCone(dm, cell, &cone));
36209566063dSJacob Faibussowitsch     PetscCall(DMPlexGetConeOrientation(dm, cell, &ornt));
362107218a29SMatthew G. Knepley     //PetscCheck(!ornt[0], PETSC_COMM_SELF, PETSC_ERR_SUP, "Face %" PetscInt_FMT " in hybrid cell %" PetscInt_FMT " has orientation %" PetscInt_FMT " != 0", cone[0], cell, ornt[0]);
3622148442b3SMatthew G. Knepley     for (s = 0; s < 2; ++s) {
362307218a29SMatthew G. Knepley       const PetscInt tdX     = totDimX[s];
362407218a29SMatthew G. Knepley       PetscScalar   *closure = NULL, *xl = &x[s][cind * tdX];
362507218a29SMatthew G. Knepley       PetscInt       face = cone[s], point = face, subpoint, Nx, i;
362607218a29SMatthew G. Knepley 
362707218a29SMatthew G. Knepley       if (useCell) {
36285fedec97SMatthew G. Knepley         const PetscInt *support;
362907218a29SMatthew G. Knepley         PetscInt        ssize;
36306528b96dSMatthew G. Knepley 
363107218a29SMatthew G. Knepley         PetscCall(DMPlexGetSupport(dm, face, &support));
363207218a29SMatthew G. Knepley         PetscCall(DMPlexGetSupportSize(dm, face, &ssize));
363307218a29SMatthew G. Knepley         PetscCheck(ssize == 2, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Face %" PetscInt_FMT " from cell %" PetscInt_FMT " has support size %" PetscInt_FMT " != 2", face, cell, ssize);
363407218a29SMatthew G. Knepley         if (support[0] == cell) point = support[1];
363507218a29SMatthew G. Knepley         else if (support[1] == cell) point = support[0];
363607218a29SMatthew G. Knepley         else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Face %" PetscInt_FMT " does not have cell %" PetscInt_FMT " in its support", face, cell);
363707218a29SMatthew G. Knepley       }
363807218a29SMatthew G. Knepley       PetscCall(DMGetEnclosurePoint(plexX[s], dm, encX[s], point, &subpoint));
363907218a29SMatthew G. Knepley       PetscCall(DMPlexVecGetOrientedClosure_Internal(plexX[s], sectionX[s], locX[s], subpoint, ornt[s], &Nx, &closure));
364007218a29SMatthew G. Knepley       PetscCheck(Nx == tdX, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "Closure size %" PetscInt_FMT " for subpoint %" PetscInt_FMT " does not match DS size %" PetscInt_FMT, Nx, subpoint, tdX);
364107218a29SMatthew G. Knepley       for (i = 0; i < Nx; ++i) xl[i] = closure[i];
364207218a29SMatthew G. Knepley       PetscCall(DMPlexVecRestoreClosure(plexX[s], sectionX[s], locX[s], subpoint, &Nx, &closure));
36436528b96dSMatthew G. Knepley     }
36446528b96dSMatthew G. Knepley   }
364507218a29SMatthew G. Knepley   for (s = 0; s < 2; ++s) PetscCall(DMDestroy(&plexX[s]));
36469566063dSJacob Faibussowitsch   PetscCall(ISRestorePointRange(cellIS, &cStart, &cEnd, &cells));
36473ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
36486528b96dSMatthew G. Knepley }
36496528b96dSMatthew G. Knepley 
365007218a29SMatthew G. Knepley static PetscErrorCode DMPlexRestoreHybridFields(DM dm, DM dmX[], PetscDS dsX[], IS cellIS, Vec locX[], PetscBool useCell, PetscScalar *x[])
3651d71ae5a4SJacob Faibussowitsch {
36526528b96dSMatthew G. Knepley   PetscFunctionBegin;
365307218a29SMatthew G. Knepley   if (!locX[0] || !locX[1]) PetscFunctionReturn(PETSC_SUCCESS);
365407218a29SMatthew G. Knepley   PetscCall(DMRestoreWorkArray(dmX[0], 0, MPIU_SCALAR, &x[0]));
365507218a29SMatthew G. Knepley   PetscCall(DMRestoreWorkArray(dmX[1], 0, MPIU_SCALAR, &x[1]));
36563ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
36576528b96dSMatthew G. Knepley }
36586528b96dSMatthew G. Knepley 
36592f856554SMatthew G. Knepley /*@C
36602f856554SMatthew G. Knepley   DMPlexGetFaceFields - Retrieve the field values values for a chunk of faces
36612f856554SMatthew G. Knepley 
36622f856554SMatthew G. Knepley   Input Parameters:
3663a1cb98faSBarry Smith + dm     - The `DM`
36642f856554SMatthew G. Knepley . fStart - The first face to include
36652f856554SMatthew G. Knepley . fEnd   - The first face to exclude
36662f856554SMatthew G. Knepley . locX   - A local vector with the solution fields
36672f856554SMatthew G. Knepley . locX_t - A local vector with solution field time derivatives, or NULL
36682f856554SMatthew G. Knepley . faceGeometry - A local vector with face geometry
36692f856554SMatthew G. Knepley . cellGeometry - A local vector with cell geometry
36702f856554SMatthew G. Knepley - locaGrad - A local vector with field gradients, or NULL
36712f856554SMatthew G. Knepley 
36722f856554SMatthew G. Knepley   Output Parameters:
36732f856554SMatthew G. Knepley + Nface - The number of faces with field values
36742f856554SMatthew G. Knepley . uL - The field values at the left side of the face
36752f856554SMatthew G. Knepley - uR - The field values at the right side of the face
36762f856554SMatthew G. Knepley 
36772f856554SMatthew G. Knepley   Level: developer
36782f856554SMatthew G. Knepley 
3679a1cb98faSBarry Smith .seealso: [](chapter_unstructured), `DM`, `DMPLEX`, `DMPlexGetCellFields()`
36802f856554SMatthew G. Knepley @*/
3681d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexGetFaceFields(DM dm, PetscInt fStart, PetscInt fEnd, Vec locX, Vec locX_t, Vec faceGeometry, Vec cellGeometry, Vec locGrad, PetscInt *Nface, PetscScalar **uL, PetscScalar **uR)
3682d71ae5a4SJacob Faibussowitsch {
36832f856554SMatthew G. Knepley   DM                 dmFace, dmCell, dmGrad = NULL;
36842f856554SMatthew G. Knepley   PetscSection       section;
36852f856554SMatthew G. Knepley   PetscDS            prob;
36862f856554SMatthew G. Knepley   DMLabel            ghostLabel;
36872f856554SMatthew G. Knepley   const PetscScalar *facegeom, *cellgeom, *x, *lgrad;
36882f856554SMatthew G. Knepley   PetscBool         *isFE;
36892f856554SMatthew G. Knepley   PetscInt           dim, Nf, f, Nc, numFaces = fEnd - fStart, iface, face;
36902f856554SMatthew G. Knepley 
36912f856554SMatthew G. Knepley   PetscFunctionBegin;
36922f856554SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
36932f856554SMatthew G. Knepley   PetscValidHeaderSpecific(locX, VEC_CLASSID, 4);
3694ad540459SPierre Jolivet   if (locX_t) PetscValidHeaderSpecific(locX_t, VEC_CLASSID, 5);
36952f856554SMatthew G. Knepley   PetscValidHeaderSpecific(faceGeometry, VEC_CLASSID, 6);
36962f856554SMatthew G. Knepley   PetscValidHeaderSpecific(cellGeometry, VEC_CLASSID, 7);
3697ad540459SPierre Jolivet   if (locGrad) PetscValidHeaderSpecific(locGrad, VEC_CLASSID, 8);
3698064a246eSJacob Faibussowitsch   PetscValidPointer(uL, 10);
3699064a246eSJacob Faibussowitsch   PetscValidPointer(uR, 11);
37009566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dm, &dim));
37019566063dSJacob Faibussowitsch   PetscCall(DMGetDS(dm, &prob));
37029566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dm, &section));
37039566063dSJacob Faibussowitsch   PetscCall(PetscDSGetNumFields(prob, &Nf));
37049566063dSJacob Faibussowitsch   PetscCall(PetscDSGetTotalComponents(prob, &Nc));
37059566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(Nf, &isFE));
37062f856554SMatthew G. Knepley   for (f = 0; f < Nf; ++f) {
37072f856554SMatthew G. Knepley     PetscObject  obj;
37082f856554SMatthew G. Knepley     PetscClassId id;
37092f856554SMatthew G. Knepley 
37109566063dSJacob Faibussowitsch     PetscCall(PetscDSGetDiscretization(prob, f, &obj));
37119566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetClassId(obj, &id));
37129371c9d4SSatish Balay     if (id == PETSCFE_CLASSID) {
37139371c9d4SSatish Balay       isFE[f] = PETSC_TRUE;
37149371c9d4SSatish Balay     } else if (id == PETSCFV_CLASSID) {
37159371c9d4SSatish Balay       isFE[f] = PETSC_FALSE;
37169371c9d4SSatish Balay     } else {
37179371c9d4SSatish Balay       isFE[f] = PETSC_FALSE;
37189371c9d4SSatish Balay     }
37192f856554SMatthew G. Knepley   }
37209566063dSJacob Faibussowitsch   PetscCall(DMGetLabel(dm, "ghost", &ghostLabel));
37219566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(locX, &x));
37229566063dSJacob Faibussowitsch   PetscCall(VecGetDM(faceGeometry, &dmFace));
37239566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(faceGeometry, &facegeom));
37249566063dSJacob Faibussowitsch   PetscCall(VecGetDM(cellGeometry, &dmCell));
37259566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(cellGeometry, &cellgeom));
37262f856554SMatthew G. Knepley   if (locGrad) {
37279566063dSJacob Faibussowitsch     PetscCall(VecGetDM(locGrad, &dmGrad));
37289566063dSJacob Faibussowitsch     PetscCall(VecGetArrayRead(locGrad, &lgrad));
37292f856554SMatthew G. Knepley   }
37309566063dSJacob Faibussowitsch   PetscCall(DMGetWorkArray(dm, numFaces * Nc, MPIU_SCALAR, uL));
37319566063dSJacob Faibussowitsch   PetscCall(DMGetWorkArray(dm, numFaces * Nc, MPIU_SCALAR, uR));
37322f856554SMatthew G. Knepley   /* Right now just eat the extra work for FE (could make a cell loop) */
37332f856554SMatthew G. Knepley   for (face = fStart, iface = 0; face < fEnd; ++face) {
37342f856554SMatthew G. Knepley     const PetscInt  *cells;
37352f856554SMatthew G. Knepley     PetscFVFaceGeom *fg;
37362f856554SMatthew G. Knepley     PetscFVCellGeom *cgL, *cgR;
37372f856554SMatthew G. Knepley     PetscScalar     *xL, *xR, *gL, *gR;
37382f856554SMatthew G. Knepley     PetscScalar     *uLl = *uL, *uRl = *uR;
37392f856554SMatthew G. Knepley     PetscInt         ghost, nsupp, nchild;
37402f856554SMatthew G. Knepley 
37419566063dSJacob Faibussowitsch     PetscCall(DMLabelGetValue(ghostLabel, face, &ghost));
37429566063dSJacob Faibussowitsch     PetscCall(DMPlexGetSupportSize(dm, face, &nsupp));
37439566063dSJacob Faibussowitsch     PetscCall(DMPlexGetTreeChildren(dm, face, &nchild, NULL));
37442f856554SMatthew G. Knepley     if (ghost >= 0 || nsupp > 2 || nchild > 0) continue;
37459566063dSJacob Faibussowitsch     PetscCall(DMPlexPointLocalRead(dmFace, face, facegeom, &fg));
37469566063dSJacob Faibussowitsch     PetscCall(DMPlexGetSupport(dm, face, &cells));
37479566063dSJacob Faibussowitsch     PetscCall(DMPlexPointLocalRead(dmCell, cells[0], cellgeom, &cgL));
37489566063dSJacob Faibussowitsch     PetscCall(DMPlexPointLocalRead(dmCell, cells[1], cellgeom, &cgR));
37492f856554SMatthew G. Knepley     for (f = 0; f < Nf; ++f) {
37502f856554SMatthew G. Knepley       PetscInt off;
37512f856554SMatthew G. Knepley 
37529566063dSJacob Faibussowitsch       PetscCall(PetscDSGetComponentOffset(prob, f, &off));
37532f856554SMatthew G. Knepley       if (isFE[f]) {
37542f856554SMatthew G. Knepley         const PetscInt *cone;
37552f856554SMatthew G. Knepley         PetscInt        comp, coneSizeL, coneSizeR, faceLocL, faceLocR, ldof, rdof, d;
37562f856554SMatthew G. Knepley 
37572f856554SMatthew G. Knepley         xL = xR = NULL;
37589566063dSJacob Faibussowitsch         PetscCall(PetscSectionGetFieldComponents(section, f, &comp));
37599566063dSJacob Faibussowitsch         PetscCall(DMPlexVecGetClosure(dm, section, locX, cells[0], &ldof, (PetscScalar **)&xL));
37609566063dSJacob Faibussowitsch         PetscCall(DMPlexVecGetClosure(dm, section, locX, cells[1], &rdof, (PetscScalar **)&xR));
37619566063dSJacob Faibussowitsch         PetscCall(DMPlexGetCone(dm, cells[0], &cone));
37629566063dSJacob Faibussowitsch         PetscCall(DMPlexGetConeSize(dm, cells[0], &coneSizeL));
37639371c9d4SSatish Balay         for (faceLocL = 0; faceLocL < coneSizeL; ++faceLocL)
37649371c9d4SSatish Balay           if (cone[faceLocL] == face) break;
37659566063dSJacob Faibussowitsch         PetscCall(DMPlexGetCone(dm, cells[1], &cone));
37669566063dSJacob Faibussowitsch         PetscCall(DMPlexGetConeSize(dm, cells[1], &coneSizeR));
37679371c9d4SSatish Balay         for (faceLocR = 0; faceLocR < coneSizeR; ++faceLocR)
37689371c9d4SSatish Balay           if (cone[faceLocR] == face) break;
37691dca8a05SBarry Smith         PetscCheck(faceLocL != coneSizeL || faceLocR != coneSizeR, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Could not find face %" PetscInt_FMT " in cone of cell %" PetscInt_FMT " or cell %" PetscInt_FMT, face, cells[0], cells[1]);
37702f856554SMatthew G. Knepley         /* Check that FEM field has values in the right cell (sometimes its an FV ghost cell) */
37712f856554SMatthew G. Knepley         /* TODO: this is a hack that might not be right for nonconforming */
37722f856554SMatthew G. Knepley         if (faceLocL < coneSizeL) {
37739566063dSJacob Faibussowitsch           PetscCall(PetscFEEvaluateFaceFields_Internal(prob, f, faceLocL, xL, &uLl[iface * Nc + off]));
37749566063dSJacob Faibussowitsch           if (rdof == ldof && faceLocR < coneSizeR) PetscCall(PetscFEEvaluateFaceFields_Internal(prob, f, faceLocR, xR, &uRl[iface * Nc + off]));
37752f856554SMatthew G. Knepley           else {
37769371c9d4SSatish Balay             for (d = 0; d < comp; ++d) uRl[iface * Nc + off + d] = uLl[iface * Nc + off + d];
37779371c9d4SSatish Balay           }
37789371c9d4SSatish Balay         } else {
37799566063dSJacob Faibussowitsch           PetscCall(PetscFEEvaluateFaceFields_Internal(prob, f, faceLocR, xR, &uRl[iface * Nc + off]));
37809566063dSJacob Faibussowitsch           PetscCall(PetscSectionGetFieldComponents(section, f, &comp));
37812f856554SMatthew G. Knepley           for (d = 0; d < comp; ++d) uLl[iface * Nc + off + d] = uRl[iface * Nc + off + d];
37822f856554SMatthew G. Knepley         }
37839566063dSJacob Faibussowitsch         PetscCall(DMPlexVecRestoreClosure(dm, section, locX, cells[0], &ldof, (PetscScalar **)&xL));
37849566063dSJacob Faibussowitsch         PetscCall(DMPlexVecRestoreClosure(dm, section, locX, cells[1], &rdof, (PetscScalar **)&xR));
37852f856554SMatthew G. Knepley       } else {
37862f856554SMatthew G. Knepley         PetscFV  fv;
37872f856554SMatthew G. Knepley         PetscInt numComp, c;
37882f856554SMatthew G. Knepley 
37899566063dSJacob Faibussowitsch         PetscCall(PetscDSGetDiscretization(prob, f, (PetscObject *)&fv));
37909566063dSJacob Faibussowitsch         PetscCall(PetscFVGetNumComponents(fv, &numComp));
37919566063dSJacob Faibussowitsch         PetscCall(DMPlexPointLocalFieldRead(dm, cells[0], f, x, &xL));
37929566063dSJacob Faibussowitsch         PetscCall(DMPlexPointLocalFieldRead(dm, cells[1], f, x, &xR));
37932f856554SMatthew G. Knepley         if (dmGrad) {
37942f856554SMatthew G. Knepley           PetscReal dxL[3], dxR[3];
37952f856554SMatthew G. Knepley 
37969566063dSJacob Faibussowitsch           PetscCall(DMPlexPointLocalRead(dmGrad, cells[0], lgrad, &gL));
37979566063dSJacob Faibussowitsch           PetscCall(DMPlexPointLocalRead(dmGrad, cells[1], lgrad, &gR));
37982f856554SMatthew G. Knepley           DMPlex_WaxpyD_Internal(dim, -1, cgL->centroid, fg->centroid, dxL);
37992f856554SMatthew G. Knepley           DMPlex_WaxpyD_Internal(dim, -1, cgR->centroid, fg->centroid, dxR);
38002f856554SMatthew G. Knepley           for (c = 0; c < numComp; ++c) {
38012f856554SMatthew G. Knepley             uLl[iface * Nc + off + c] = xL[c] + DMPlex_DotD_Internal(dim, &gL[c * dim], dxL);
38022f856554SMatthew G. Knepley             uRl[iface * Nc + off + c] = xR[c] + DMPlex_DotD_Internal(dim, &gR[c * dim], dxR);
38032f856554SMatthew G. Knepley           }
38042f856554SMatthew G. Knepley         } else {
38052f856554SMatthew G. Knepley           for (c = 0; c < numComp; ++c) {
38062f856554SMatthew G. Knepley             uLl[iface * Nc + off + c] = xL[c];
38072f856554SMatthew G. Knepley             uRl[iface * Nc + off + c] = xR[c];
38082f856554SMatthew G. Knepley           }
38092f856554SMatthew G. Knepley         }
38102f856554SMatthew G. Knepley       }
38112f856554SMatthew G. Knepley     }
38122f856554SMatthew G. Knepley     ++iface;
38132f856554SMatthew G. Knepley   }
38142f856554SMatthew G. Knepley   *Nface = iface;
38159566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(locX, &x));
38169566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(faceGeometry, &facegeom));
38179566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(cellGeometry, &cellgeom));
381848a46eb9SPierre Jolivet   if (locGrad) PetscCall(VecRestoreArrayRead(locGrad, &lgrad));
38199566063dSJacob Faibussowitsch   PetscCall(PetscFree(isFE));
38203ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
38212f856554SMatthew G. Knepley }
38222f856554SMatthew G. Knepley 
38232f856554SMatthew G. Knepley /*@C
38242f856554SMatthew G. Knepley   DMPlexRestoreFaceFields - Restore the field values values for a chunk of faces
38252f856554SMatthew G. Knepley 
38262f856554SMatthew G. Knepley   Input Parameters:
3827a1cb98faSBarry Smith + dm     - The `DM`
38282f856554SMatthew G. Knepley . fStart - The first face to include
38292f856554SMatthew G. Knepley . fEnd   - The first face to exclude
38302f856554SMatthew G. Knepley . locX   - A local vector with the solution fields
38312f856554SMatthew G. Knepley . locX_t - A local vector with solution field time derivatives, or NULL
38322f856554SMatthew G. Knepley . faceGeometry - A local vector with face geometry
38332f856554SMatthew G. Knepley . cellGeometry - A local vector with cell geometry
38342f856554SMatthew G. Knepley - locaGrad - A local vector with field gradients, or NULL
38352f856554SMatthew G. Knepley 
38362f856554SMatthew G. Knepley   Output Parameters:
38372f856554SMatthew G. Knepley + Nface - The number of faces with field values
38382f856554SMatthew G. Knepley . uL - The field values at the left side of the face
38392f856554SMatthew G. Knepley - uR - The field values at the right side of the face
38402f856554SMatthew G. Knepley 
38412f856554SMatthew G. Knepley   Level: developer
38422f856554SMatthew G. Knepley 
3843a1cb98faSBarry Smith .seealso: [](chapter_unstructured), `DM`, `DMPLEX`, `DMPlexGetFaceFields()`
38442f856554SMatthew G. Knepley @*/
3845d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexRestoreFaceFields(DM dm, PetscInt fStart, PetscInt fEnd, Vec locX, Vec locX_t, Vec faceGeometry, Vec cellGeometry, Vec locGrad, PetscInt *Nface, PetscScalar **uL, PetscScalar **uR)
3846d71ae5a4SJacob Faibussowitsch {
38472f856554SMatthew G. Knepley   PetscFunctionBegin;
38489566063dSJacob Faibussowitsch   PetscCall(DMRestoreWorkArray(dm, 0, MPIU_SCALAR, uL));
38499566063dSJacob Faibussowitsch   PetscCall(DMRestoreWorkArray(dm, 0, MPIU_SCALAR, uR));
38503ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
38512f856554SMatthew G. Knepley }
38522f856554SMatthew G. Knepley 
38532f856554SMatthew G. Knepley /*@C
38542f856554SMatthew G. Knepley   DMPlexGetFaceGeometry - Retrieve the geometric values for a chunk of faces
38552f856554SMatthew G. Knepley 
38562f856554SMatthew G. Knepley   Input Parameters:
3857a1cb98faSBarry Smith + dm     - The `DM`
38582f856554SMatthew G. Knepley . fStart - The first face to include
38592f856554SMatthew G. Knepley . fEnd   - The first face to exclude
38602f856554SMatthew G. Knepley . faceGeometry - A local vector with face geometry
38612f856554SMatthew G. Knepley - cellGeometry - A local vector with cell geometry
38622f856554SMatthew G. Knepley 
38632f856554SMatthew G. Knepley   Output Parameters:
38642f856554SMatthew G. Knepley + Nface - The number of faces with field values
38652f856554SMatthew G. Knepley . fgeom - The extract the face centroid and normal
38662f856554SMatthew G. Knepley - vol   - The cell volume
38672f856554SMatthew G. Knepley 
38682f856554SMatthew G. Knepley   Level: developer
38692f856554SMatthew G. Knepley 
3870a1cb98faSBarry Smith .seealso: [](chapter_unstructured), `DM`, `DMPLEX`, `DMPlexGetCellFields()`
38712f856554SMatthew G. Knepley @*/
3872d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexGetFaceGeometry(DM dm, PetscInt fStart, PetscInt fEnd, Vec faceGeometry, Vec cellGeometry, PetscInt *Nface, PetscFVFaceGeom **fgeom, PetscReal **vol)
3873d71ae5a4SJacob Faibussowitsch {
38742f856554SMatthew G. Knepley   DM                 dmFace, dmCell;
38752f856554SMatthew G. Knepley   DMLabel            ghostLabel;
38762f856554SMatthew G. Knepley   const PetscScalar *facegeom, *cellgeom;
38772f856554SMatthew G. Knepley   PetscInt           dim, numFaces = fEnd - fStart, iface, face;
38782f856554SMatthew G. Knepley 
38792f856554SMatthew G. Knepley   PetscFunctionBegin;
38802f856554SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
38812f856554SMatthew G. Knepley   PetscValidHeaderSpecific(faceGeometry, VEC_CLASSID, 4);
38822f856554SMatthew G. Knepley   PetscValidHeaderSpecific(cellGeometry, VEC_CLASSID, 5);
3883064a246eSJacob Faibussowitsch   PetscValidPointer(fgeom, 7);
3884064a246eSJacob Faibussowitsch   PetscValidPointer(vol, 8);
38859566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dm, &dim));
38869566063dSJacob Faibussowitsch   PetscCall(DMGetLabel(dm, "ghost", &ghostLabel));
38879566063dSJacob Faibussowitsch   PetscCall(VecGetDM(faceGeometry, &dmFace));
38889566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(faceGeometry, &facegeom));
38899566063dSJacob Faibussowitsch   PetscCall(VecGetDM(cellGeometry, &dmCell));
38909566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(cellGeometry, &cellgeom));
38919566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(numFaces, fgeom));
38929566063dSJacob Faibussowitsch   PetscCall(DMGetWorkArray(dm, numFaces * 2, MPIU_SCALAR, vol));
38932f856554SMatthew G. Knepley   for (face = fStart, iface = 0; face < fEnd; ++face) {
38942f856554SMatthew G. Knepley     const PetscInt  *cells;
38952f856554SMatthew G. Knepley     PetscFVFaceGeom *fg;
38962f856554SMatthew G. Knepley     PetscFVCellGeom *cgL, *cgR;
38972f856554SMatthew G. Knepley     PetscFVFaceGeom *fgeoml = *fgeom;
38982f856554SMatthew G. Knepley     PetscReal       *voll   = *vol;
38992f856554SMatthew G. Knepley     PetscInt         ghost, d, nchild, nsupp;
39002f856554SMatthew G. Knepley 
39019566063dSJacob Faibussowitsch     PetscCall(DMLabelGetValue(ghostLabel, face, &ghost));
39029566063dSJacob Faibussowitsch     PetscCall(DMPlexGetSupportSize(dm, face, &nsupp));
39039566063dSJacob Faibussowitsch     PetscCall(DMPlexGetTreeChildren(dm, face, &nchild, NULL));
39042f856554SMatthew G. Knepley     if (ghost >= 0 || nsupp > 2 || nchild > 0) continue;
39059566063dSJacob Faibussowitsch     PetscCall(DMPlexPointLocalRead(dmFace, face, facegeom, &fg));
39069566063dSJacob Faibussowitsch     PetscCall(DMPlexGetSupport(dm, face, &cells));
39079566063dSJacob Faibussowitsch     PetscCall(DMPlexPointLocalRead(dmCell, cells[0], cellgeom, &cgL));
39089566063dSJacob Faibussowitsch     PetscCall(DMPlexPointLocalRead(dmCell, cells[1], cellgeom, &cgR));
39092f856554SMatthew G. Knepley     for (d = 0; d < dim; ++d) {
39102f856554SMatthew G. Knepley       fgeoml[iface].centroid[d] = fg->centroid[d];
39112f856554SMatthew G. Knepley       fgeoml[iface].normal[d]   = fg->normal[d];
39122f856554SMatthew G. Knepley     }
39132f856554SMatthew G. Knepley     voll[iface * 2 + 0] = cgL->volume;
39142f856554SMatthew G. Knepley     voll[iface * 2 + 1] = cgR->volume;
39152f856554SMatthew G. Knepley     ++iface;
39162f856554SMatthew G. Knepley   }
39172f856554SMatthew G. Knepley   *Nface = iface;
39189566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(faceGeometry, &facegeom));
39199566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(cellGeometry, &cellgeom));
39203ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
39212f856554SMatthew G. Knepley }
39222f856554SMatthew G. Knepley 
39232f856554SMatthew G. Knepley /*@C
39242f856554SMatthew G. Knepley   DMPlexRestoreFaceGeometry - Restore the field values values for a chunk of faces
39252f856554SMatthew G. Knepley 
39262f856554SMatthew G. Knepley   Input Parameters:
3927a1cb98faSBarry Smith + dm     - The `DM`
39282f856554SMatthew G. Knepley . fStart - The first face to include
39292f856554SMatthew G. Knepley . fEnd   - The first face to exclude
39302f856554SMatthew G. Knepley . faceGeometry - A local vector with face geometry
39312f856554SMatthew G. Knepley - cellGeometry - A local vector with cell geometry
39322f856554SMatthew G. Knepley 
39332f856554SMatthew G. Knepley   Output Parameters:
39342f856554SMatthew G. Knepley + Nface - The number of faces with field values
39352f856554SMatthew G. Knepley . fgeom - The extract the face centroid and normal
39362f856554SMatthew G. Knepley - vol   - The cell volume
39372f856554SMatthew G. Knepley 
39382f856554SMatthew G. Knepley   Level: developer
39392f856554SMatthew G. Knepley 
3940a1cb98faSBarry Smith .seealso: [](chapter_unstructured), `DM`, `DMPLEX`, `DMPlexGetFaceFields()`
39412f856554SMatthew G. Knepley @*/
3942d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexRestoreFaceGeometry(DM dm, PetscInt fStart, PetscInt fEnd, Vec faceGeometry, Vec cellGeometry, PetscInt *Nface, PetscFVFaceGeom **fgeom, PetscReal **vol)
3943d71ae5a4SJacob Faibussowitsch {
39442f856554SMatthew G. Knepley   PetscFunctionBegin;
39459566063dSJacob Faibussowitsch   PetscCall(PetscFree(*fgeom));
39469566063dSJacob Faibussowitsch   PetscCall(DMRestoreWorkArray(dm, 0, MPIU_REAL, vol));
39473ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
39482f856554SMatthew G. Knepley }
39492f856554SMatthew G. Knepley 
3950d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSNESGetFEGeom(DMField coordField, IS pointIS, PetscQuadrature quad, PetscBool faceData, PetscFEGeom **geom)
3951d71ae5a4SJacob Faibussowitsch {
3952a1cf66bbSMatthew G. Knepley   char           composeStr[33] = {0};
3953a1cf66bbSMatthew G. Knepley   PetscObjectId  id;
3954a1cf66bbSMatthew G. Knepley   PetscContainer container;
3955a1cf66bbSMatthew G. Knepley 
3956a1cf66bbSMatthew G. Knepley   PetscFunctionBegin;
39579566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetId((PetscObject)quad, &id));
395863a3b9bcSJacob Faibussowitsch   PetscCall(PetscSNPrintf(composeStr, 32, "DMSNESGetFEGeom_%" PetscInt64_FMT "\n", id));
39599566063dSJacob Faibussowitsch   PetscCall(PetscObjectQuery((PetscObject)pointIS, composeStr, (PetscObject *)&container));
3960a1cf66bbSMatthew G. Knepley   if (container) {
39619566063dSJacob Faibussowitsch     PetscCall(PetscContainerGetPointer(container, (void **)geom));
3962a1cf66bbSMatthew G. Knepley   } else {
39639566063dSJacob Faibussowitsch     PetscCall(DMFieldCreateFEGeom(coordField, pointIS, quad, faceData, geom));
39649566063dSJacob Faibussowitsch     PetscCall(PetscContainerCreate(PETSC_COMM_SELF, &container));
39659566063dSJacob Faibussowitsch     PetscCall(PetscContainerSetPointer(container, (void *)*geom));
39669566063dSJacob Faibussowitsch     PetscCall(PetscContainerSetUserDestroy(container, PetscContainerUserDestroy_PetscFEGeom));
39679566063dSJacob Faibussowitsch     PetscCall(PetscObjectCompose((PetscObject)pointIS, composeStr, (PetscObject)container));
39689566063dSJacob Faibussowitsch     PetscCall(PetscContainerDestroy(&container));
3969a1cf66bbSMatthew G. Knepley   }
39703ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3971a1cf66bbSMatthew G. Knepley }
3972a1cf66bbSMatthew G. Knepley 
3973d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSNESRestoreFEGeom(DMField coordField, IS pointIS, PetscQuadrature quad, PetscBool faceData, PetscFEGeom **geom)
3974d71ae5a4SJacob Faibussowitsch {
3975a1cf66bbSMatthew G. Knepley   PetscFunctionBegin;
3976a1cf66bbSMatthew G. Knepley   *geom = NULL;
39773ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3978a1cf66bbSMatthew G. Knepley }
3979a1cf66bbSMatthew G. Knepley 
3980d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeResidual_Patch_Internal(DM dm, PetscSection section, IS cellIS, PetscReal t, Vec locX, Vec locX_t, Vec locF, void *user)
3981d71ae5a4SJacob Faibussowitsch {
398292d50984SMatthew G. Knepley   DM_Plex        *mesh       = (DM_Plex *)dm->data;
398392d50984SMatthew G. Knepley   const char     *name       = "Residual";
398492d50984SMatthew G. Knepley   DM              dmAux      = NULL;
398592d50984SMatthew G. Knepley   DMLabel         ghostLabel = NULL;
398692d50984SMatthew G. Knepley   PetscDS         prob       = NULL;
398792d50984SMatthew G. Knepley   PetscDS         probAux    = NULL;
398892d50984SMatthew G. Knepley   PetscBool       useFEM     = PETSC_FALSE;
398992d50984SMatthew G. Knepley   PetscBool       isImplicit = (locX_t || t == PETSC_MIN_REAL) ? PETSC_TRUE : PETSC_FALSE;
399092d50984SMatthew G. Knepley   DMField         coordField = NULL;
3991c0006e53SPatrick Farrell   Vec             locA;
3992c0006e53SPatrick Farrell   PetscScalar    *u = NULL, *u_t, *a, *uL = NULL, *uR = NULL;
399392d50984SMatthew G. Knepley   IS              chunkIS;
399492d50984SMatthew G. Knepley   const PetscInt *cells;
399592d50984SMatthew G. Knepley   PetscInt        cStart, cEnd, numCells;
3996364207b6SKarl Rupp   PetscInt        Nf, f, totDim, totDimAux, numChunks, cellChunkSize, chunk, fStart, fEnd;
399792d50984SMatthew G. Knepley   PetscInt        maxDegree = PETSC_MAX_INT;
399806ad1575SMatthew G. Knepley   PetscFormKey    key;
399992d50984SMatthew G. Knepley   PetscQuadrature affineQuad = NULL, *quads = NULL;
400092d50984SMatthew G. Knepley   PetscFEGeom    *affineGeom = NULL, **geoms = NULL;
400192d50984SMatthew G. Knepley 
400292d50984SMatthew G. Knepley   PetscFunctionBegin;
40039566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(DMPLEX_ResidualFEM, dm, 0, 0, 0));
400492d50984SMatthew G. Knepley   /* FEM+FVM */
400592d50984SMatthew G. Knepley   /* 1: Get sizes from dm and dmAux */
40069566063dSJacob Faibussowitsch   PetscCall(DMGetLabel(dm, "ghost", &ghostLabel));
40079566063dSJacob Faibussowitsch   PetscCall(DMGetDS(dm, &prob));
40089566063dSJacob Faibussowitsch   PetscCall(PetscDSGetNumFields(prob, &Nf));
40099566063dSJacob Faibussowitsch   PetscCall(PetscDSGetTotalDimension(prob, &totDim));
40109566063dSJacob Faibussowitsch   PetscCall(DMGetAuxiliaryVec(dm, NULL, 0, 0, &locA));
401192d50984SMatthew G. Knepley   if (locA) {
40129566063dSJacob Faibussowitsch     PetscCall(VecGetDM(locA, &dmAux));
40139566063dSJacob Faibussowitsch     PetscCall(DMGetDS(dmAux, &probAux));
40149566063dSJacob Faibussowitsch     PetscCall(PetscDSGetTotalDimension(probAux, &totDimAux));
401592d50984SMatthew G. Knepley   }
401692d50984SMatthew G. Knepley   /* 2: Get geometric data */
401792d50984SMatthew G. Knepley   for (f = 0; f < Nf; ++f) {
401892d50984SMatthew G. Knepley     PetscObject  obj;
401992d50984SMatthew G. Knepley     PetscClassId id;
402092d50984SMatthew G. Knepley     PetscBool    fimp;
402192d50984SMatthew G. Knepley 
40229566063dSJacob Faibussowitsch     PetscCall(PetscDSGetImplicit(prob, f, &fimp));
402392d50984SMatthew G. Knepley     if (isImplicit != fimp) continue;
40249566063dSJacob Faibussowitsch     PetscCall(PetscDSGetDiscretization(prob, f, &obj));
40259566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetClassId(obj, &id));
4026ad540459SPierre Jolivet     if (id == PETSCFE_CLASSID) useFEM = PETSC_TRUE;
40275f80ce2aSJacob Faibussowitsch     PetscCheck(id != PETSCFV_CLASSID, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Use of FVM with PCPATCH not yet implemented");
402892d50984SMatthew G. Knepley   }
402992d50984SMatthew G. Knepley   if (useFEM) {
40309566063dSJacob Faibussowitsch     PetscCall(DMGetCoordinateField(dm, &coordField));
40319566063dSJacob Faibussowitsch     PetscCall(DMFieldGetDegree(coordField, cellIS, NULL, &maxDegree));
403292d50984SMatthew G. Knepley     if (maxDegree <= 1) {
40339566063dSJacob Faibussowitsch       PetscCall(DMFieldCreateDefaultQuadrature(coordField, cellIS, &affineQuad));
403448a46eb9SPierre Jolivet       if (affineQuad) PetscCall(DMSNESGetFEGeom(coordField, cellIS, affineQuad, PETSC_FALSE, &affineGeom));
403592d50984SMatthew G. Knepley     } else {
40369566063dSJacob Faibussowitsch       PetscCall(PetscCalloc2(Nf, &quads, Nf, &geoms));
403792d50984SMatthew G. Knepley       for (f = 0; f < Nf; ++f) {
403892d50984SMatthew G. Knepley         PetscObject  obj;
403992d50984SMatthew G. Knepley         PetscClassId id;
404092d50984SMatthew G. Knepley         PetscBool    fimp;
404192d50984SMatthew G. Knepley 
40429566063dSJacob Faibussowitsch         PetscCall(PetscDSGetImplicit(prob, f, &fimp));
404392d50984SMatthew G. Knepley         if (isImplicit != fimp) continue;
40449566063dSJacob Faibussowitsch         PetscCall(PetscDSGetDiscretization(prob, f, &obj));
40459566063dSJacob Faibussowitsch         PetscCall(PetscObjectGetClassId(obj, &id));
404692d50984SMatthew G. Knepley         if (id == PETSCFE_CLASSID) {
404792d50984SMatthew G. Knepley           PetscFE fe = (PetscFE)obj;
404892d50984SMatthew G. Knepley 
40499566063dSJacob Faibussowitsch           PetscCall(PetscFEGetQuadrature(fe, &quads[f]));
40509566063dSJacob Faibussowitsch           PetscCall(PetscObjectReference((PetscObject)quads[f]));
40519566063dSJacob Faibussowitsch           PetscCall(DMSNESGetFEGeom(coordField, cellIS, quads[f], PETSC_FALSE, &geoms[f]));
405292d50984SMatthew G. Knepley         }
405392d50984SMatthew G. Knepley       }
405492d50984SMatthew G. Knepley     }
405592d50984SMatthew G. Knepley   }
405692d50984SMatthew G. Knepley   /* Loop over chunks */
40579566063dSJacob Faibussowitsch   PetscCall(ISGetPointRange(cellIS, &cStart, &cEnd, &cells));
40589566063dSJacob Faibussowitsch   PetscCall(DMPlexGetHeightStratum(dm, 1, &fStart, &fEnd));
40599566063dSJacob Faibussowitsch   if (useFEM) PetscCall(ISCreate(PETSC_COMM_SELF, &chunkIS));
406092d50984SMatthew G. Knepley   numCells      = cEnd - cStart;
406192d50984SMatthew G. Knepley   numChunks     = 1;
406292d50984SMatthew G. Knepley   cellChunkSize = numCells / numChunks;
406392d50984SMatthew G. Knepley   numChunks     = PetscMin(1, numCells);
40646528b96dSMatthew G. Knepley   key.label     = NULL;
40656528b96dSMatthew G. Knepley   key.value     = 0;
406606ad1575SMatthew G. Knepley   key.part      = 0;
406792d50984SMatthew G. Knepley   for (chunk = 0; chunk < numChunks; ++chunk) {
4068c0006e53SPatrick Farrell     PetscScalar     *elemVec, *fluxL = NULL, *fluxR = NULL;
4069c0006e53SPatrick Farrell     PetscReal       *vol   = NULL;
4070c0006e53SPatrick Farrell     PetscFVFaceGeom *fgeom = NULL;
407192d50984SMatthew G. Knepley     PetscInt         cS = cStart + chunk * cellChunkSize, cE = PetscMin(cS + cellChunkSize, cEnd), numCells = cE - cS, c;
4072c0006e53SPatrick Farrell     PetscInt         numFaces = 0;
407392d50984SMatthew G. Knepley 
407492d50984SMatthew G. Knepley     /* Extract field coefficients */
407592d50984SMatthew G. Knepley     if (useFEM) {
40769566063dSJacob Faibussowitsch       PetscCall(ISGetPointSubrange(chunkIS, cS, cE, cells));
40779566063dSJacob Faibussowitsch       PetscCall(DMPlexGetCellFields(dm, chunkIS, locX, locX_t, locA, &u, &u_t, &a));
40789566063dSJacob Faibussowitsch       PetscCall(DMGetWorkArray(dm, numCells * totDim, MPIU_SCALAR, &elemVec));
40799566063dSJacob Faibussowitsch       PetscCall(PetscArrayzero(elemVec, numCells * totDim));
408092d50984SMatthew G. Knepley     }
408192d50984SMatthew G. Knepley     /* TODO We will interlace both our field coefficients (u, u_t, uL, uR, etc.) and our output (elemVec, fL, fR). I think this works */
408292d50984SMatthew G. Knepley     /* Loop over fields */
408392d50984SMatthew G. Knepley     for (f = 0; f < Nf; ++f) {
408492d50984SMatthew G. Knepley       PetscObject  obj;
408592d50984SMatthew G. Knepley       PetscClassId id;
408692d50984SMatthew G. Knepley       PetscBool    fimp;
408792d50984SMatthew G. Knepley       PetscInt     numChunks, numBatches, batchSize, numBlocks, blockSize, Ne, Nr, offset;
408892d50984SMatthew G. Knepley 
40896528b96dSMatthew G. Knepley       key.field = f;
40909566063dSJacob Faibussowitsch       PetscCall(PetscDSGetImplicit(prob, f, &fimp));
409192d50984SMatthew G. Knepley       if (isImplicit != fimp) continue;
40929566063dSJacob Faibussowitsch       PetscCall(PetscDSGetDiscretization(prob, f, &obj));
40939566063dSJacob Faibussowitsch       PetscCall(PetscObjectGetClassId(obj, &id));
409492d50984SMatthew G. Knepley       if (id == PETSCFE_CLASSID) {
409592d50984SMatthew G. Knepley         PetscFE         fe        = (PetscFE)obj;
409692d50984SMatthew G. Knepley         PetscFEGeom    *geom      = affineGeom ? affineGeom : geoms[f];
409792d50984SMatthew G. Knepley         PetscFEGeom    *chunkGeom = NULL;
409892d50984SMatthew G. Knepley         PetscQuadrature quad      = affineQuad ? affineQuad : quads[f];
409992d50984SMatthew G. Knepley         PetscInt        Nq, Nb;
410092d50984SMatthew G. Knepley 
41019566063dSJacob Faibussowitsch         PetscCall(PetscFEGetTileSizes(fe, NULL, &numBlocks, NULL, &numBatches));
41029566063dSJacob Faibussowitsch         PetscCall(PetscQuadratureGetData(quad, NULL, NULL, &Nq, NULL, NULL));
41039566063dSJacob Faibussowitsch         PetscCall(PetscFEGetDimension(fe, &Nb));
410492d50984SMatthew G. Knepley         blockSize = Nb;
410592d50984SMatthew G. Knepley         batchSize = numBlocks * blockSize;
41069566063dSJacob Faibussowitsch         PetscCall(PetscFESetTileSizes(fe, blockSize, numBlocks, batchSize, numBatches));
410792d50984SMatthew G. Knepley         numChunks = numCells / (numBatches * batchSize);
410892d50984SMatthew G. Knepley         Ne        = numChunks * numBatches * batchSize;
410992d50984SMatthew G. Knepley         Nr        = numCells % (numBatches * batchSize);
411092d50984SMatthew G. Knepley         offset    = numCells - Nr;
411192d50984SMatthew G. Knepley         /* Integrate FE residual to get elemVec (need fields at quadrature points) */
411292d50984SMatthew G. Knepley         /*   For FV, I think we use a P0 basis and the cell coefficients (for subdivided cells, we can tweak the basis tabulation to be the indicator function) */
41139566063dSJacob Faibussowitsch         PetscCall(PetscFEGeomGetChunk(geom, 0, offset, &chunkGeom));
41149566063dSJacob Faibussowitsch         PetscCall(PetscFEIntegrateResidual(prob, key, Ne, chunkGeom, u, u_t, probAux, a, t, elemVec));
41159566063dSJacob Faibussowitsch         PetscCall(PetscFEGeomGetChunk(geom, offset, numCells, &chunkGeom));
41169566063dSJacob Faibussowitsch         PetscCall(PetscFEIntegrateResidual(prob, key, Nr, chunkGeom, &u[offset * totDim], u_t ? &u_t[offset * totDim] : NULL, probAux, &a[offset * totDimAux], t, &elemVec[offset * totDim]));
41179566063dSJacob Faibussowitsch         PetscCall(PetscFEGeomRestoreChunk(geom, offset, numCells, &chunkGeom));
411892d50984SMatthew G. Knepley       } else if (id == PETSCFV_CLASSID) {
411992d50984SMatthew G. Knepley         PetscFV fv = (PetscFV)obj;
412092d50984SMatthew G. Knepley 
412192d50984SMatthew G. Knepley         Ne = numFaces;
412292d50984SMatthew G. Knepley         /* Riemann solve over faces (need fields at face centroids) */
412392d50984SMatthew G. Knepley         /*   We need to evaluate FE fields at those coordinates */
41249566063dSJacob Faibussowitsch         PetscCall(PetscFVIntegrateRHSFunction(fv, prob, f, Ne, fgeom, vol, uL, uR, fluxL, fluxR));
412563a3b9bcSJacob Faibussowitsch       } else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, f);
412692d50984SMatthew G. Knepley     }
412792d50984SMatthew G. Knepley     /* Loop over domain */
412892d50984SMatthew G. Knepley     if (useFEM) {
412992d50984SMatthew G. Knepley       /* Add elemVec to locX */
413092d50984SMatthew G. Knepley       for (c = cS; c < cE; ++c) {
413192d50984SMatthew G. Knepley         const PetscInt cell = cells ? cells[c] : c;
413292d50984SMatthew G. Knepley         const PetscInt cind = c - cStart;
413392d50984SMatthew G. Knepley 
41349566063dSJacob Faibussowitsch         if (mesh->printFEM > 1) PetscCall(DMPrintCellVector(cell, name, totDim, &elemVec[cind * totDim]));
413592d50984SMatthew G. Knepley         if (ghostLabel) {
413692d50984SMatthew G. Knepley           PetscInt ghostVal;
413792d50984SMatthew G. Knepley 
41389566063dSJacob Faibussowitsch           PetscCall(DMLabelGetValue(ghostLabel, cell, &ghostVal));
413992d50984SMatthew G. Knepley           if (ghostVal > 0) continue;
414092d50984SMatthew G. Knepley         }
41419566063dSJacob Faibussowitsch         PetscCall(DMPlexVecSetClosure(dm, section, locF, cell, &elemVec[cind * totDim], ADD_ALL_VALUES));
414292d50984SMatthew G. Knepley       }
414392d50984SMatthew G. Knepley     }
414492d50984SMatthew G. Knepley     /* Handle time derivative */
414592d50984SMatthew G. Knepley     if (locX_t) {
414692d50984SMatthew G. Knepley       PetscScalar *x_t, *fa;
414792d50984SMatthew G. Knepley 
41489566063dSJacob Faibussowitsch       PetscCall(VecGetArray(locF, &fa));
41499566063dSJacob Faibussowitsch       PetscCall(VecGetArray(locX_t, &x_t));
415092d50984SMatthew G. Knepley       for (f = 0; f < Nf; ++f) {
415192d50984SMatthew G. Knepley         PetscFV      fv;
415292d50984SMatthew G. Knepley         PetscObject  obj;
415392d50984SMatthew G. Knepley         PetscClassId id;
415492d50984SMatthew G. Knepley         PetscInt     pdim, d;
415592d50984SMatthew G. Knepley 
41569566063dSJacob Faibussowitsch         PetscCall(PetscDSGetDiscretization(prob, f, &obj));
41579566063dSJacob Faibussowitsch         PetscCall(PetscObjectGetClassId(obj, &id));
415892d50984SMatthew G. Knepley         if (id != PETSCFV_CLASSID) continue;
415992d50984SMatthew G. Knepley         fv = (PetscFV)obj;
41609566063dSJacob Faibussowitsch         PetscCall(PetscFVGetNumComponents(fv, &pdim));
416192d50984SMatthew G. Knepley         for (c = cS; c < cE; ++c) {
416292d50984SMatthew G. Knepley           const PetscInt cell = cells ? cells[c] : c;
416392d50984SMatthew G. Knepley           PetscScalar   *u_t, *r;
416492d50984SMatthew G. Knepley 
416592d50984SMatthew G. Knepley           if (ghostLabel) {
416692d50984SMatthew G. Knepley             PetscInt ghostVal;
416792d50984SMatthew G. Knepley 
41689566063dSJacob Faibussowitsch             PetscCall(DMLabelGetValue(ghostLabel, cell, &ghostVal));
416992d50984SMatthew G. Knepley             if (ghostVal > 0) continue;
417092d50984SMatthew G. Knepley           }
41719566063dSJacob Faibussowitsch           PetscCall(DMPlexPointLocalFieldRead(dm, cell, f, x_t, &u_t));
41729566063dSJacob Faibussowitsch           PetscCall(DMPlexPointLocalFieldRef(dm, cell, f, fa, &r));
417392d50984SMatthew G. Knepley           for (d = 0; d < pdim; ++d) r[d] += u_t[d];
417492d50984SMatthew G. Knepley         }
417592d50984SMatthew G. Knepley       }
41769566063dSJacob Faibussowitsch       PetscCall(VecRestoreArray(locX_t, &x_t));
41779566063dSJacob Faibussowitsch       PetscCall(VecRestoreArray(locF, &fa));
417892d50984SMatthew G. Knepley     }
417992d50984SMatthew G. Knepley     if (useFEM) {
41809566063dSJacob Faibussowitsch       PetscCall(DMPlexRestoreCellFields(dm, chunkIS, locX, locX_t, locA, &u, &u_t, &a));
41819566063dSJacob Faibussowitsch       PetscCall(DMRestoreWorkArray(dm, numCells * totDim, MPIU_SCALAR, &elemVec));
418292d50984SMatthew G. Knepley     }
418392d50984SMatthew G. Knepley   }
41849566063dSJacob Faibussowitsch   if (useFEM) PetscCall(ISDestroy(&chunkIS));
41859566063dSJacob Faibussowitsch   PetscCall(ISRestorePointRange(cellIS, &cStart, &cEnd, &cells));
418692d50984SMatthew G. Knepley   /* TODO Could include boundary residual here (see DMPlexComputeResidual_Internal) */
418792d50984SMatthew G. Knepley   if (useFEM) {
418892d50984SMatthew G. Knepley     if (maxDegree <= 1) {
41899566063dSJacob Faibussowitsch       PetscCall(DMSNESRestoreFEGeom(coordField, cellIS, affineQuad, PETSC_FALSE, &affineGeom));
41909566063dSJacob Faibussowitsch       PetscCall(PetscQuadratureDestroy(&affineQuad));
419192d50984SMatthew G. Knepley     } else {
419292d50984SMatthew G. Knepley       for (f = 0; f < Nf; ++f) {
41939566063dSJacob Faibussowitsch         PetscCall(DMSNESRestoreFEGeom(coordField, cellIS, quads[f], PETSC_FALSE, &geoms[f]));
41949566063dSJacob Faibussowitsch         PetscCall(PetscQuadratureDestroy(&quads[f]));
419592d50984SMatthew G. Knepley       }
41969566063dSJacob Faibussowitsch       PetscCall(PetscFree2(quads, geoms));
419792d50984SMatthew G. Knepley     }
419892d50984SMatthew G. Knepley   }
41999566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(DMPLEX_ResidualFEM, dm, 0, 0, 0));
42003ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
420192d50984SMatthew G. Knepley }
420292d50984SMatthew G. Knepley 
4203a1cf66bbSMatthew G. Knepley /*
4204a1cf66bbSMatthew G. Knepley   We always assemble JacP, and if the matrix is different from Jac and two different sets of point functions are provided, we also assemble Jac
4205a1cf66bbSMatthew G. Knepley 
4206a1cf66bbSMatthew G. Knepley   X   - The local solution vector
4207a5b23f4aSJose E. Roman   X_t - The local solution time derivative vector, or NULL
4208a1cf66bbSMatthew G. Knepley */
4209d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeJacobian_Patch_Internal(DM dm, PetscSection section, PetscSection globalSection, IS cellIS, PetscReal t, PetscReal X_tShift, Vec X, Vec X_t, Mat Jac, Mat JacP, void *ctx)
4210d71ae5a4SJacob Faibussowitsch {
4211a1cf66bbSMatthew G. Knepley   DM_Plex        *mesh = (DM_Plex *)dm->data;
4212a1cf66bbSMatthew G. Knepley   const char     *name = "Jacobian", *nameP = "JacobianPre";
4213a1cf66bbSMatthew G. Knepley   DM              dmAux = NULL;
4214a1cf66bbSMatthew G. Knepley   PetscDS         prob, probAux = NULL;
4215a1cf66bbSMatthew G. Knepley   PetscSection    sectionAux = NULL;
4216a1cf66bbSMatthew G. Knepley   Vec             A;
4217a1cf66bbSMatthew G. Knepley   DMField         coordField;
4218a1cf66bbSMatthew G. Knepley   PetscFEGeom    *cgeomFEM;
4219a1cf66bbSMatthew G. Knepley   PetscQuadrature qGeom = NULL;
4220a1cf66bbSMatthew G. Knepley   Mat             J = Jac, JP = JacP;
4221a1cf66bbSMatthew G. Knepley   PetscScalar    *work, *u = NULL, *u_t = NULL, *a = NULL, *elemMat = NULL, *elemMatP = NULL, *elemMatD = NULL;
4222e432b41dSStefano Zampini   PetscBool       hasJac, hasPrec, hasDyn, assembleJac, *isFE, hasFV = PETSC_FALSE;
4223a1cf66bbSMatthew G. Knepley   const PetscInt *cells;
422406ad1575SMatthew G. Knepley   PetscFormKey    key;
42259b2fc754SMatthew G. Knepley   PetscInt        Nf, fieldI, fieldJ, maxDegree, numCells, cStart, cEnd, numChunks, chunkSize, chunk, totDim, totDimAux = 0, sz, wsz, off = 0, offCell = 0;
4226a1cf66bbSMatthew G. Knepley 
4227a1cf66bbSMatthew G. Knepley   PetscFunctionBegin;
42289566063dSJacob Faibussowitsch   PetscCall(ISGetLocalSize(cellIS, &numCells));
42299566063dSJacob Faibussowitsch   PetscCall(ISGetPointRange(cellIS, &cStart, &cEnd, &cells));
42309566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(DMPLEX_JacobianFEM, dm, 0, 0, 0));
42319566063dSJacob Faibussowitsch   PetscCall(DMGetDS(dm, &prob));
42329566063dSJacob Faibussowitsch   PetscCall(DMGetAuxiliaryVec(dm, NULL, 0, 0, &A));
42339a2a23afSMatthew G. Knepley   if (A) {
42349566063dSJacob Faibussowitsch     PetscCall(VecGetDM(A, &dmAux));
42359566063dSJacob Faibussowitsch     PetscCall(DMGetLocalSection(dmAux, &sectionAux));
42369566063dSJacob Faibussowitsch     PetscCall(DMGetDS(dmAux, &probAux));
4237a1cf66bbSMatthew G. Knepley   }
4238a1cf66bbSMatthew G. Knepley   /* Get flags */
42399566063dSJacob Faibussowitsch   PetscCall(PetscDSGetNumFields(prob, &Nf));
42409566063dSJacob Faibussowitsch   PetscCall(DMGetWorkArray(dm, Nf, MPIU_BOOL, &isFE));
4241a1cf66bbSMatthew G. Knepley   for (fieldI = 0; fieldI < Nf; ++fieldI) {
4242a1cf66bbSMatthew G. Knepley     PetscObject  disc;
4243a1cf66bbSMatthew G. Knepley     PetscClassId id;
42449566063dSJacob Faibussowitsch     PetscCall(PetscDSGetDiscretization(prob, fieldI, &disc));
42459566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetClassId(disc, &id));
42469371c9d4SSatish Balay     if (id == PETSCFE_CLASSID) {
42479371c9d4SSatish Balay       isFE[fieldI] = PETSC_TRUE;
42489371c9d4SSatish Balay     } else if (id == PETSCFV_CLASSID) {
42499371c9d4SSatish Balay       hasFV        = PETSC_TRUE;
42509371c9d4SSatish Balay       isFE[fieldI] = PETSC_FALSE;
42519371c9d4SSatish Balay     }
4252a1cf66bbSMatthew G. Knepley   }
42539566063dSJacob Faibussowitsch   PetscCall(PetscDSHasJacobian(prob, &hasJac));
42549566063dSJacob Faibussowitsch   PetscCall(PetscDSHasJacobianPreconditioner(prob, &hasPrec));
42559566063dSJacob Faibussowitsch   PetscCall(PetscDSHasDynamicJacobian(prob, &hasDyn));
4256a1cf66bbSMatthew G. Knepley   assembleJac = hasJac && hasPrec && (Jac != JacP) ? PETSC_TRUE : PETSC_FALSE;
4257a1cf66bbSMatthew G. Knepley   hasDyn      = hasDyn && (X_tShift != 0.0) ? PETSC_TRUE : PETSC_FALSE;
42589566063dSJacob Faibussowitsch   if (hasFV) PetscCall(MatSetOption(JP, MAT_IGNORE_ZERO_ENTRIES, PETSC_TRUE)); /* No allocated space for FV stuff, so ignore the zero entries */
42599566063dSJacob Faibussowitsch   PetscCall(PetscDSGetTotalDimension(prob, &totDim));
42609566063dSJacob Faibussowitsch   if (probAux) PetscCall(PetscDSGetTotalDimension(probAux, &totDimAux));
4261a1cf66bbSMatthew G. Knepley   /* Compute batch sizes */
4262a1cf66bbSMatthew G. Knepley   if (isFE[0]) {
4263a1cf66bbSMatthew G. Knepley     PetscFE         fe;
4264a1cf66bbSMatthew G. Knepley     PetscQuadrature q;
4265a1cf66bbSMatthew G. Knepley     PetscInt        numQuadPoints, numBatches, batchSize, numBlocks, blockSize, Nb;
4266a1cf66bbSMatthew G. Knepley 
42679566063dSJacob Faibussowitsch     PetscCall(PetscDSGetDiscretization(prob, 0, (PetscObject *)&fe));
42689566063dSJacob Faibussowitsch     PetscCall(PetscFEGetQuadrature(fe, &q));
42699566063dSJacob Faibussowitsch     PetscCall(PetscQuadratureGetData(q, NULL, NULL, &numQuadPoints, NULL, NULL));
42709566063dSJacob Faibussowitsch     PetscCall(PetscFEGetDimension(fe, &Nb));
42719566063dSJacob Faibussowitsch     PetscCall(PetscFEGetTileSizes(fe, NULL, &numBlocks, NULL, &numBatches));
4272a1cf66bbSMatthew G. Knepley     blockSize = Nb * numQuadPoints;
4273a1cf66bbSMatthew G. Knepley     batchSize = numBlocks * blockSize;
4274a1cf66bbSMatthew G. Knepley     chunkSize = numBatches * batchSize;
4275a1cf66bbSMatthew G. Knepley     numChunks = numCells / chunkSize + numCells % chunkSize;
42769566063dSJacob Faibussowitsch     PetscCall(PetscFESetTileSizes(fe, blockSize, numBlocks, batchSize, numBatches));
4277a1cf66bbSMatthew G. Knepley   } else {
4278a1cf66bbSMatthew G. Knepley     chunkSize = numCells;
4279a1cf66bbSMatthew G. Knepley     numChunks = 1;
4280a1cf66bbSMatthew G. Knepley   }
4281a1cf66bbSMatthew G. Knepley   /* Get work space */
4282a1cf66bbSMatthew G. Knepley   wsz = (((X ? 1 : 0) + (X_t ? 1 : 0) + (dmAux ? 1 : 0)) * totDim + ((hasJac ? 1 : 0) + (hasPrec ? 1 : 0) + (hasDyn ? 1 : 0)) * totDim * totDim) * chunkSize;
42839566063dSJacob Faibussowitsch   PetscCall(DMGetWorkArray(dm, wsz, MPIU_SCALAR, &work));
42849566063dSJacob Faibussowitsch   PetscCall(PetscArrayzero(work, wsz));
4285a1cf66bbSMatthew G. Knepley   off      = 0;
4286a1cf66bbSMatthew G. Knepley   u        = X ? (sz = chunkSize * totDim, off += sz, work + off - sz) : NULL;
4287a1cf66bbSMatthew G. Knepley   u_t      = X_t ? (sz = chunkSize * totDim, off += sz, work + off - sz) : NULL;
4288a1cf66bbSMatthew G. Knepley   a        = dmAux ? (sz = chunkSize * totDimAux, off += sz, work + off - sz) : NULL;
4289a1cf66bbSMatthew G. Knepley   elemMat  = hasJac ? (sz = chunkSize * totDim * totDim, off += sz, work + off - sz) : NULL;
4290a1cf66bbSMatthew G. Knepley   elemMatP = hasPrec ? (sz = chunkSize * totDim * totDim, off += sz, work + off - sz) : NULL;
4291a1cf66bbSMatthew G. Knepley   elemMatD = hasDyn ? (sz = chunkSize * totDim * totDim, off += sz, work + off - sz) : NULL;
429263a3b9bcSJacob Faibussowitsch   PetscCheck(off == wsz, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Error is workspace size %" PetscInt_FMT " should be %" PetscInt_FMT, off, wsz);
4293a1cf66bbSMatthew G. Knepley   /* Setup geometry */
42949566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateField(dm, &coordField));
42959566063dSJacob Faibussowitsch   PetscCall(DMFieldGetDegree(coordField, cellIS, NULL, &maxDegree));
42969566063dSJacob Faibussowitsch   if (maxDegree <= 1) PetscCall(DMFieldCreateDefaultQuadrature(coordField, cellIS, &qGeom));
4297a1cf66bbSMatthew G. Knepley   if (!qGeom) {
4298a1cf66bbSMatthew G. Knepley     PetscFE fe;
4299a1cf66bbSMatthew G. Knepley 
43009566063dSJacob Faibussowitsch     PetscCall(PetscDSGetDiscretization(prob, 0, (PetscObject *)&fe));
43019566063dSJacob Faibussowitsch     PetscCall(PetscFEGetQuadrature(fe, &qGeom));
43029566063dSJacob Faibussowitsch     PetscCall(PetscObjectReference((PetscObject)qGeom));
4303a1cf66bbSMatthew G. Knepley   }
43049566063dSJacob Faibussowitsch   PetscCall(DMSNESGetFEGeom(coordField, cellIS, qGeom, PETSC_FALSE, &cgeomFEM));
4305a1cf66bbSMatthew G. Knepley   /* Compute volume integrals */
43069566063dSJacob Faibussowitsch   if (assembleJac) PetscCall(MatZeroEntries(J));
43079566063dSJacob Faibussowitsch   PetscCall(MatZeroEntries(JP));
43086528b96dSMatthew G. Knepley   key.label = NULL;
43096528b96dSMatthew G. Knepley   key.value = 0;
431006ad1575SMatthew G. Knepley   key.part  = 0;
4311a1cf66bbSMatthew G. Knepley   for (chunk = 0; chunk < numChunks; ++chunk, offCell += chunkSize) {
4312a1cf66bbSMatthew G. Knepley     const PetscInt Ncell = PetscMin(chunkSize, numCells - offCell);
4313a1cf66bbSMatthew G. Knepley     PetscInt       c;
4314a1cf66bbSMatthew G. Knepley 
4315a1cf66bbSMatthew G. Knepley     /* Extract values */
4316a1cf66bbSMatthew G. Knepley     for (c = 0; c < Ncell; ++c) {
4317a1cf66bbSMatthew G. Knepley       const PetscInt cell = cells ? cells[c + offCell] : c + offCell;
4318a1cf66bbSMatthew G. Knepley       PetscScalar   *x = NULL, *x_t = NULL;
4319a1cf66bbSMatthew G. Knepley       PetscInt       i;
4320a1cf66bbSMatthew G. Knepley 
4321a1cf66bbSMatthew G. Knepley       if (X) {
43229566063dSJacob Faibussowitsch         PetscCall(DMPlexVecGetClosure(dm, section, X, cell, NULL, &x));
4323a1cf66bbSMatthew G. Knepley         for (i = 0; i < totDim; ++i) u[c * totDim + i] = x[i];
43249566063dSJacob Faibussowitsch         PetscCall(DMPlexVecRestoreClosure(dm, section, X, cell, NULL, &x));
4325a1cf66bbSMatthew G. Knepley       }
4326a1cf66bbSMatthew G. Knepley       if (X_t) {
43279566063dSJacob Faibussowitsch         PetscCall(DMPlexVecGetClosure(dm, section, X_t, cell, NULL, &x_t));
4328a1cf66bbSMatthew G. Knepley         for (i = 0; i < totDim; ++i) u_t[c * totDim + i] = x_t[i];
43299566063dSJacob Faibussowitsch         PetscCall(DMPlexVecRestoreClosure(dm, section, X_t, cell, NULL, &x_t));
4330a1cf66bbSMatthew G. Knepley       }
4331a1cf66bbSMatthew G. Knepley       if (dmAux) {
43329566063dSJacob Faibussowitsch         PetscCall(DMPlexVecGetClosure(dmAux, sectionAux, A, cell, NULL, &x));
4333a1cf66bbSMatthew G. Knepley         for (i = 0; i < totDimAux; ++i) a[c * totDimAux + i] = x[i];
43349566063dSJacob Faibussowitsch         PetscCall(DMPlexVecRestoreClosure(dmAux, sectionAux, A, cell, NULL, &x));
4335a1cf66bbSMatthew G. Knepley       }
4336a1cf66bbSMatthew G. Knepley     }
4337a1cf66bbSMatthew G. Knepley     for (fieldI = 0; fieldI < Nf; ++fieldI) {
4338a1cf66bbSMatthew G. Knepley       PetscFE fe;
43399566063dSJacob Faibussowitsch       PetscCall(PetscDSGetDiscretization(prob, fieldI, (PetscObject *)&fe));
4340a1cf66bbSMatthew G. Knepley       for (fieldJ = 0; fieldJ < Nf; ++fieldJ) {
43416528b96dSMatthew G. Knepley         key.field = fieldI * Nf + fieldJ;
43429566063dSJacob Faibussowitsch         if (hasJac) PetscCall(PetscFEIntegrateJacobian(prob, PETSCFE_JACOBIAN, key, Ncell, cgeomFEM, u, u_t, probAux, a, t, X_tShift, elemMat));
43439566063dSJacob Faibussowitsch         if (hasPrec) PetscCall(PetscFEIntegrateJacobian(prob, PETSCFE_JACOBIAN_PRE, key, Ncell, cgeomFEM, u, u_t, probAux, a, t, X_tShift, elemMatP));
43449566063dSJacob Faibussowitsch         if (hasDyn) PetscCall(PetscFEIntegrateJacobian(prob, PETSCFE_JACOBIAN_DYN, key, Ncell, cgeomFEM, u, u_t, probAux, a, t, X_tShift, elemMatD));
4345a1cf66bbSMatthew G. Knepley       }
4346a1cf66bbSMatthew G. Knepley       /* For finite volume, add the identity */
4347a1cf66bbSMatthew G. Knepley       if (!isFE[fieldI]) {
4348a1cf66bbSMatthew G. Knepley         PetscFV  fv;
4349a1cf66bbSMatthew G. Knepley         PetscInt eOffset = 0, Nc, fc, foff;
4350a1cf66bbSMatthew G. Knepley 
43519566063dSJacob Faibussowitsch         PetscCall(PetscDSGetFieldOffset(prob, fieldI, &foff));
43529566063dSJacob Faibussowitsch         PetscCall(PetscDSGetDiscretization(prob, fieldI, (PetscObject *)&fv));
43539566063dSJacob Faibussowitsch         PetscCall(PetscFVGetNumComponents(fv, &Nc));
4354a1cf66bbSMatthew G. Knepley         for (c = 0; c < chunkSize; ++c, eOffset += totDim * totDim) {
4355a1cf66bbSMatthew G. Knepley           for (fc = 0; fc < Nc; ++fc) {
4356a1cf66bbSMatthew G. Knepley             const PetscInt i = foff + fc;
4357ad540459SPierre Jolivet             if (hasJac) elemMat[eOffset + i * totDim + i] = 1.0;
4358ad540459SPierre Jolivet             if (hasPrec) elemMatP[eOffset + i * totDim + i] = 1.0;
4359a1cf66bbSMatthew G. Knepley           }
4360a1cf66bbSMatthew G. Knepley         }
4361a1cf66bbSMatthew G. Knepley       }
4362a1cf66bbSMatthew G. Knepley     }
4363a1cf66bbSMatthew G. Knepley     /*   Add contribution from X_t */
43649371c9d4SSatish Balay     if (hasDyn) {
43659371c9d4SSatish Balay       for (c = 0; c < chunkSize * totDim * totDim; ++c) elemMat[c] += X_tShift * elemMatD[c];
43669371c9d4SSatish Balay     }
4367a1cf66bbSMatthew G. Knepley     /* Insert values into matrix */
4368a1cf66bbSMatthew G. Knepley     for (c = 0; c < Ncell; ++c) {
4369a1cf66bbSMatthew G. Knepley       const PetscInt cell = cells ? cells[c + offCell] : c + offCell;
4370a1cf66bbSMatthew G. Knepley       if (mesh->printFEM > 1) {
43719566063dSJacob Faibussowitsch         if (hasJac) PetscCall(DMPrintCellMatrix(cell, name, totDim, totDim, &elemMat[(c - cStart) * totDim * totDim]));
43729566063dSJacob Faibussowitsch         if (hasPrec) PetscCall(DMPrintCellMatrix(cell, nameP, totDim, totDim, &elemMatP[(c - cStart) * totDim * totDim]));
4373a1cf66bbSMatthew G. Knepley       }
43749566063dSJacob Faibussowitsch       if (assembleJac) PetscCall(DMPlexMatSetClosure(dm, section, globalSection, Jac, cell, &elemMat[(c - cStart) * totDim * totDim], ADD_VALUES));
43759566063dSJacob Faibussowitsch       PetscCall(DMPlexMatSetClosure(dm, section, globalSection, JP, cell, &elemMat[(c - cStart) * totDim * totDim], ADD_VALUES));
4376a1cf66bbSMatthew G. Knepley     }
4377a1cf66bbSMatthew G. Knepley   }
4378a1cf66bbSMatthew G. Knepley   /* Cleanup */
43799566063dSJacob Faibussowitsch   PetscCall(DMSNESRestoreFEGeom(coordField, cellIS, qGeom, PETSC_FALSE, &cgeomFEM));
43809566063dSJacob Faibussowitsch   PetscCall(PetscQuadratureDestroy(&qGeom));
43819566063dSJacob Faibussowitsch   if (hasFV) PetscCall(MatSetOption(JacP, MAT_IGNORE_ZERO_ENTRIES, PETSC_FALSE));
43829566063dSJacob Faibussowitsch   PetscCall(DMRestoreWorkArray(dm, Nf, MPIU_BOOL, &isFE));
43839566063dSJacob Faibussowitsch   PetscCall(DMRestoreWorkArray(dm, ((1 + (X_t ? 1 : 0) + (dmAux ? 1 : 0)) * totDim + ((hasJac ? 1 : 0) + (hasPrec ? 1 : 0) + (hasDyn ? 1 : 0)) * totDim * totDim) * chunkSize, MPIU_SCALAR, &work));
4384a1cf66bbSMatthew G. Knepley   /* Compute boundary integrals */
43859566063dSJacob Faibussowitsch   /* PetscCall(DMPlexComputeBdJacobian_Internal(dm, X, X_t, t, X_tShift, Jac, JacP, ctx)); */
4386a1cf66bbSMatthew G. Knepley   /* Assemble matrix */
43879371c9d4SSatish Balay   if (assembleJac) {
43889371c9d4SSatish Balay     PetscCall(MatAssemblyBegin(Jac, MAT_FINAL_ASSEMBLY));
43899371c9d4SSatish Balay     PetscCall(MatAssemblyEnd(Jac, MAT_FINAL_ASSEMBLY));
43909371c9d4SSatish Balay   }
43919371c9d4SSatish Balay   PetscCall(MatAssemblyBegin(JacP, MAT_FINAL_ASSEMBLY));
43929371c9d4SSatish Balay   PetscCall(MatAssemblyEnd(JacP, MAT_FINAL_ASSEMBLY));
43939566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(DMPLEX_JacobianFEM, dm, 0, 0, 0));
43943ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
4395a1cf66bbSMatthew G. Knepley }
43963e9753d6SMatthew G. Knepley 
43973e9753d6SMatthew G. Knepley /******** FEM Assembly Function ********/
43983e9753d6SMatthew G. Knepley 
4399d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMConvertPlex_Internal(DM dm, DM *plex, PetscBool copy)
4400d71ae5a4SJacob Faibussowitsch {
44013e9753d6SMatthew G. Knepley   PetscBool isPlex;
44023e9753d6SMatthew G. Knepley 
44033e9753d6SMatthew G. Knepley   PetscFunctionBegin;
44049566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)dm, DMPLEX, &isPlex));
44053e9753d6SMatthew G. Knepley   if (isPlex) {
44063e9753d6SMatthew G. Knepley     *plex = dm;
44079566063dSJacob Faibussowitsch     PetscCall(PetscObjectReference((PetscObject)dm));
44083e9753d6SMatthew G. Knepley   } else {
44099566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)dm, "dm_plex", (PetscObject *)plex));
44103e9753d6SMatthew G. Knepley     if (!*plex) {
44119566063dSJacob Faibussowitsch       PetscCall(DMConvert(dm, DMPLEX, plex));
44129566063dSJacob Faibussowitsch       PetscCall(PetscObjectCompose((PetscObject)dm, "dm_plex", (PetscObject)*plex));
44131baa6e33SBarry Smith       if (copy) PetscCall(DMCopyAuxiliaryVec(dm, *plex));
44143e9753d6SMatthew G. Knepley     } else {
44159566063dSJacob Faibussowitsch       PetscCall(PetscObjectReference((PetscObject)*plex));
44163e9753d6SMatthew G. Knepley     }
44173e9753d6SMatthew G. Knepley   }
44183ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
44193e9753d6SMatthew G. Knepley }
44203e9753d6SMatthew G. Knepley 
44213e9753d6SMatthew G. Knepley /*@
44223e9753d6SMatthew G. Knepley   DMPlexGetGeometryFVM - Return precomputed geometric data
44233e9753d6SMatthew G. Knepley 
442420f4b53cSBarry Smith   Collective
44253e9753d6SMatthew G. Knepley 
44263e9753d6SMatthew G. Knepley   Input Parameter:
4427a1cb98faSBarry Smith . dm - The `DM`
44283e9753d6SMatthew G. Knepley 
44293e9753d6SMatthew G. Knepley   Output Parameters:
44303e9753d6SMatthew G. Knepley + facegeom - The values precomputed from face geometry
44313e9753d6SMatthew G. Knepley . cellgeom - The values precomputed from cell geometry
44323e9753d6SMatthew G. Knepley - minRadius - The minimum radius over the mesh of an inscribed sphere in a cell
44333e9753d6SMatthew G. Knepley 
44343e9753d6SMatthew G. Knepley   Level: developer
44353e9753d6SMatthew G. Knepley 
4436a1cb98faSBarry Smith .seealso: [](chapter_unstructured), `DM`, `DMPLEX`, `DMTSSetRHSFunctionLocal()`
44373e9753d6SMatthew G. Knepley @*/
4438d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexGetGeometryFVM(DM dm, Vec *facegeom, Vec *cellgeom, PetscReal *minRadius)
4439d71ae5a4SJacob Faibussowitsch {
44403e9753d6SMatthew G. Knepley   DM plex;
44413e9753d6SMatthew G. Knepley 
44423e9753d6SMatthew G. Knepley   PetscFunctionBegin;
44433e9753d6SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
44449566063dSJacob Faibussowitsch   PetscCall(DMConvertPlex_Internal(dm, &plex, PETSC_TRUE));
44459566063dSJacob Faibussowitsch   PetscCall(DMPlexGetDataFVM(plex, NULL, cellgeom, facegeom, NULL));
44469566063dSJacob Faibussowitsch   if (minRadius) PetscCall(DMPlexGetMinRadius(plex, minRadius));
44479566063dSJacob Faibussowitsch   PetscCall(DMDestroy(&plex));
44483ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
44493e9753d6SMatthew G. Knepley }
44503e9753d6SMatthew G. Knepley 
44513e9753d6SMatthew G. Knepley /*@
44523e9753d6SMatthew G. Knepley   DMPlexGetGradientDM - Return gradient data layout
44533e9753d6SMatthew G. Knepley 
445420f4b53cSBarry Smith   Collective
44553e9753d6SMatthew G. Knepley 
44563e9753d6SMatthew G. Knepley   Input Parameters:
4457a1cb98faSBarry Smith + dm - The `DM`
445820f4b53cSBarry Smith - fv - The `PetscFV`
44593e9753d6SMatthew G. Knepley 
44603e9753d6SMatthew G. Knepley   Output Parameter:
44613e9753d6SMatthew G. Knepley . dmGrad - The layout for gradient values
44623e9753d6SMatthew G. Knepley 
44633e9753d6SMatthew G. Knepley   Level: developer
44643e9753d6SMatthew G. Knepley 
4465a1cb98faSBarry Smith .seealso: [](chapter_unstructured), `DM`, `DMPLEX`, `DMPlexGetGeometryFVM()`
44663e9753d6SMatthew G. Knepley @*/
4467d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexGetGradientDM(DM dm, PetscFV fv, DM *dmGrad)
4468d71ae5a4SJacob Faibussowitsch {
44693e9753d6SMatthew G. Knepley   DM        plex;
44703e9753d6SMatthew G. Knepley   PetscBool computeGradients;
44713e9753d6SMatthew G. Knepley 
44723e9753d6SMatthew G. Knepley   PetscFunctionBegin;
44733e9753d6SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
44743e9753d6SMatthew G. Knepley   PetscValidHeaderSpecific(fv, PETSCFV_CLASSID, 2);
44753e9753d6SMatthew G. Knepley   PetscValidPointer(dmGrad, 3);
44769566063dSJacob Faibussowitsch   PetscCall(PetscFVGetComputeGradients(fv, &computeGradients));
44779371c9d4SSatish Balay   if (!computeGradients) {
44789371c9d4SSatish Balay     *dmGrad = NULL;
44793ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
44809371c9d4SSatish Balay   }
44819566063dSJacob Faibussowitsch   PetscCall(DMConvertPlex_Internal(dm, &plex, PETSC_TRUE));
44829566063dSJacob Faibussowitsch   PetscCall(DMPlexGetDataFVM(plex, fv, NULL, NULL, dmGrad));
44839566063dSJacob Faibussowitsch   PetscCall(DMDestroy(&plex));
44843ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
44853e9753d6SMatthew G. Knepley }
44863e9753d6SMatthew G. Knepley 
4487d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexComputeBdResidual_Single_Internal(DM dm, PetscReal t, PetscWeakForm wf, PetscFormKey key, Vec locX, Vec locX_t, Vec locF, DMField coordField, IS facetIS)
4488d71ae5a4SJacob Faibussowitsch {
44893e9753d6SMatthew G. Knepley   DM_Plex        *mesh = (DM_Plex *)dm->data;
44903e9753d6SMatthew G. Knepley   DM              plex = NULL, plexA = NULL;
44913e9753d6SMatthew G. Knepley   DMEnclosureType encAux;
44923e9753d6SMatthew G. Knepley   PetscDS         prob, probAux       = NULL;
44933e9753d6SMatthew G. Knepley   PetscSection    section, sectionAux = NULL;
44943e9753d6SMatthew G. Knepley   Vec             locA = NULL;
44953e9753d6SMatthew G. Knepley   PetscScalar    *u = NULL, *u_t = NULL, *a = NULL, *elemVec = NULL;
44963e9753d6SMatthew G. Knepley   PetscInt        totDim, totDimAux = 0;
44973e9753d6SMatthew G. Knepley 
44983e9753d6SMatthew G. Knepley   PetscFunctionBegin;
44999566063dSJacob Faibussowitsch   PetscCall(DMConvert(dm, DMPLEX, &plex));
45009566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dm, &section));
45019566063dSJacob Faibussowitsch   PetscCall(DMGetDS(dm, &prob));
45029566063dSJacob Faibussowitsch   PetscCall(PetscDSGetTotalDimension(prob, &totDim));
45039566063dSJacob Faibussowitsch   PetscCall(DMGetAuxiliaryVec(dm, key.label, key.value, key.part, &locA));
45043e9753d6SMatthew G. Knepley   if (locA) {
45053e9753d6SMatthew G. Knepley     DM dmAux;
45063e9753d6SMatthew G. Knepley 
45079566063dSJacob Faibussowitsch     PetscCall(VecGetDM(locA, &dmAux));
45089566063dSJacob Faibussowitsch     PetscCall(DMGetEnclosureRelation(dmAux, dm, &encAux));
45099566063dSJacob Faibussowitsch     PetscCall(DMConvert(dmAux, DMPLEX, &plexA));
45109566063dSJacob Faibussowitsch     PetscCall(DMGetDS(plexA, &probAux));
45119566063dSJacob Faibussowitsch     PetscCall(PetscDSGetTotalDimension(probAux, &totDimAux));
45129566063dSJacob Faibussowitsch     PetscCall(DMGetLocalSection(plexA, &sectionAux));
45133e9753d6SMatthew G. Knepley   }
45140c290148SMatthew G. Knepley   {
45153e9753d6SMatthew G. Knepley     PetscFEGeom    *fgeom;
45163e9753d6SMatthew G. Knepley     PetscInt        maxDegree;
45173e9753d6SMatthew G. Knepley     PetscQuadrature qGeom = NULL;
45183e9753d6SMatthew G. Knepley     IS              pointIS;
45193e9753d6SMatthew G. Knepley     const PetscInt *points;
45203e9753d6SMatthew G. Knepley     PetscInt        numFaces, face, Nq;
45213e9753d6SMatthew G. Knepley 
45229566063dSJacob Faibussowitsch     PetscCall(DMLabelGetStratumIS(key.label, key.value, &pointIS));
45230c290148SMatthew G. Knepley     if (!pointIS) goto end; /* No points with that id on this process */
45243e9753d6SMatthew G. Knepley     {
45253e9753d6SMatthew G. Knepley       IS isectIS;
45263e9753d6SMatthew G. Knepley 
45273e9753d6SMatthew G. Knepley       /* TODO: Special cases of ISIntersect where it is quick to check a priori if one is a superset of the other */
45289566063dSJacob Faibussowitsch       PetscCall(ISIntersect_Caching_Internal(facetIS, pointIS, &isectIS));
45299566063dSJacob Faibussowitsch       PetscCall(ISDestroy(&pointIS));
45303e9753d6SMatthew G. Knepley       pointIS = isectIS;
45313e9753d6SMatthew G. Knepley     }
45329566063dSJacob Faibussowitsch     PetscCall(ISGetLocalSize(pointIS, &numFaces));
45339566063dSJacob Faibussowitsch     PetscCall(ISGetIndices(pointIS, &points));
45349566063dSJacob Faibussowitsch     PetscCall(PetscMalloc4(numFaces * totDim, &u, locX_t ? numFaces * totDim : 0, &u_t, numFaces * totDim, &elemVec, locA ? numFaces * totDimAux : 0, &a));
45359566063dSJacob Faibussowitsch     PetscCall(DMFieldGetDegree(coordField, pointIS, NULL, &maxDegree));
453648a46eb9SPierre Jolivet     if (maxDegree <= 1) PetscCall(DMFieldCreateDefaultQuadrature(coordField, pointIS, &qGeom));
45373e9753d6SMatthew G. Knepley     if (!qGeom) {
45383e9753d6SMatthew G. Knepley       PetscFE fe;
45393e9753d6SMatthew G. Knepley 
45409566063dSJacob Faibussowitsch       PetscCall(PetscDSGetDiscretization(prob, key.field, (PetscObject *)&fe));
45419566063dSJacob Faibussowitsch       PetscCall(PetscFEGetFaceQuadrature(fe, &qGeom));
45429566063dSJacob Faibussowitsch       PetscCall(PetscObjectReference((PetscObject)qGeom));
45433e9753d6SMatthew G. Knepley     }
45449566063dSJacob Faibussowitsch     PetscCall(PetscQuadratureGetData(qGeom, NULL, NULL, &Nq, NULL, NULL));
45459566063dSJacob Faibussowitsch     PetscCall(DMSNESGetFEGeom(coordField, pointIS, qGeom, PETSC_TRUE, &fgeom));
45463e9753d6SMatthew G. Knepley     for (face = 0; face < numFaces; ++face) {
4547f15274beSMatthew Knepley       const PetscInt point = points[face], *support;
45483e9753d6SMatthew G. Knepley       PetscScalar   *x     = NULL;
4549f15274beSMatthew Knepley       PetscInt       i;
45503e9753d6SMatthew G. Knepley 
45519566063dSJacob Faibussowitsch       PetscCall(DMPlexGetSupport(dm, point, &support));
45529566063dSJacob Faibussowitsch       PetscCall(DMPlexVecGetClosure(plex, section, locX, support[0], NULL, &x));
45533e9753d6SMatthew G. Knepley       for (i = 0; i < totDim; ++i) u[face * totDim + i] = x[i];
45549566063dSJacob Faibussowitsch       PetscCall(DMPlexVecRestoreClosure(plex, section, locX, support[0], NULL, &x));
45553e9753d6SMatthew G. Knepley       if (locX_t) {
45569566063dSJacob Faibussowitsch         PetscCall(DMPlexVecGetClosure(plex, section, locX_t, support[0], NULL, &x));
45573e9753d6SMatthew G. Knepley         for (i = 0; i < totDim; ++i) u_t[face * totDim + i] = x[i];
45589566063dSJacob Faibussowitsch         PetscCall(DMPlexVecRestoreClosure(plex, section, locX_t, support[0], NULL, &x));
45593e9753d6SMatthew G. Knepley       }
45603e9753d6SMatthew G. Knepley       if (locA) {
45613e9753d6SMatthew G. Knepley         PetscInt subp;
45623e9753d6SMatthew G. Knepley 
45639566063dSJacob Faibussowitsch         PetscCall(DMGetEnclosurePoint(plexA, dm, encAux, support[0], &subp));
45649566063dSJacob Faibussowitsch         PetscCall(DMPlexVecGetClosure(plexA, sectionAux, locA, subp, NULL, &x));
45653e9753d6SMatthew G. Knepley         for (i = 0; i < totDimAux; ++i) a[face * totDimAux + i] = x[i];
45669566063dSJacob Faibussowitsch         PetscCall(DMPlexVecRestoreClosure(plexA, sectionAux, locA, subp, NULL, &x));
45673e9753d6SMatthew G. Knepley       }
45683e9753d6SMatthew G. Knepley     }
45699566063dSJacob Faibussowitsch     PetscCall(PetscArrayzero(elemVec, numFaces * totDim));
45703e9753d6SMatthew G. Knepley     {
45713e9753d6SMatthew G. Knepley       PetscFE      fe;
45723e9753d6SMatthew G. Knepley       PetscInt     Nb;
45733e9753d6SMatthew G. Knepley       PetscFEGeom *chunkGeom = NULL;
45743e9753d6SMatthew G. Knepley       /* Conforming batches */
45753e9753d6SMatthew G. Knepley       PetscInt numChunks, numBatches, numBlocks, Ne, blockSize, batchSize;
45763e9753d6SMatthew G. Knepley       /* Remainder */
45773e9753d6SMatthew G. Knepley       PetscInt Nr, offset;
45783e9753d6SMatthew G. Knepley 
45799566063dSJacob Faibussowitsch       PetscCall(PetscDSGetDiscretization(prob, key.field, (PetscObject *)&fe));
45809566063dSJacob Faibussowitsch       PetscCall(PetscFEGetDimension(fe, &Nb));
45819566063dSJacob Faibussowitsch       PetscCall(PetscFEGetTileSizes(fe, NULL, &numBlocks, NULL, &numBatches));
45823e9753d6SMatthew G. Knepley       /* TODO: documentation is unclear about what is going on with these numbers: how should Nb / Nq factor in ? */
45833e9753d6SMatthew G. Knepley       blockSize = Nb;
45843e9753d6SMatthew G. Knepley       batchSize = numBlocks * blockSize;
45859566063dSJacob Faibussowitsch       PetscCall(PetscFESetTileSizes(fe, blockSize, numBlocks, batchSize, numBatches));
45863e9753d6SMatthew G. Knepley       numChunks = numFaces / (numBatches * batchSize);
45873e9753d6SMatthew G. Knepley       Ne        = numChunks * numBatches * batchSize;
45883e9753d6SMatthew G. Knepley       Nr        = numFaces % (numBatches * batchSize);
45893e9753d6SMatthew G. Knepley       offset    = numFaces - Nr;
45909566063dSJacob Faibussowitsch       PetscCall(PetscFEGeomGetChunk(fgeom, 0, offset, &chunkGeom));
45919566063dSJacob Faibussowitsch       PetscCall(PetscFEIntegrateBdResidual(prob, wf, key, Ne, chunkGeom, u, u_t, probAux, a, t, elemVec));
45929566063dSJacob Faibussowitsch       PetscCall(PetscFEGeomRestoreChunk(fgeom, 0, offset, &chunkGeom));
45939566063dSJacob Faibussowitsch       PetscCall(PetscFEGeomGetChunk(fgeom, offset, numFaces, &chunkGeom));
45949566063dSJacob Faibussowitsch       PetscCall(PetscFEIntegrateBdResidual(prob, wf, key, Nr, chunkGeom, &u[offset * totDim], u_t ? &u_t[offset * totDim] : NULL, probAux, a ? &a[offset * totDimAux] : NULL, t, &elemVec[offset * totDim]));
45959566063dSJacob Faibussowitsch       PetscCall(PetscFEGeomRestoreChunk(fgeom, offset, numFaces, &chunkGeom));
45963e9753d6SMatthew G. Knepley     }
45973e9753d6SMatthew G. Knepley     for (face = 0; face < numFaces; ++face) {
45983e9753d6SMatthew G. Knepley       const PetscInt point = points[face], *support;
45993e9753d6SMatthew G. Knepley 
46009566063dSJacob Faibussowitsch       if (mesh->printFEM > 1) PetscCall(DMPrintCellVector(point, "BdResidual", totDim, &elemVec[face * totDim]));
46019566063dSJacob Faibussowitsch       PetscCall(DMPlexGetSupport(plex, point, &support));
46029566063dSJacob Faibussowitsch       PetscCall(DMPlexVecSetClosure(plex, NULL, locF, support[0], &elemVec[face * totDim], ADD_ALL_VALUES));
46033e9753d6SMatthew G. Knepley     }
46049566063dSJacob Faibussowitsch     PetscCall(DMSNESRestoreFEGeom(coordField, pointIS, qGeom, PETSC_TRUE, &fgeom));
46059566063dSJacob Faibussowitsch     PetscCall(PetscQuadratureDestroy(&qGeom));
46069566063dSJacob Faibussowitsch     PetscCall(ISRestoreIndices(pointIS, &points));
46079566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&pointIS));
46089566063dSJacob Faibussowitsch     PetscCall(PetscFree4(u, u_t, elemVec, a));
46093e9753d6SMatthew G. Knepley   }
46100c290148SMatthew G. Knepley end:
46119566063dSJacob Faibussowitsch   PetscCall(DMDestroy(&plex));
46129566063dSJacob Faibussowitsch   PetscCall(DMDestroy(&plexA));
46133ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
46143e9753d6SMatthew G. Knepley }
46153e9753d6SMatthew G. Knepley 
4616d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeBdResidualSingle(DM dm, PetscReal t, PetscWeakForm wf, PetscFormKey key, Vec locX, Vec locX_t, Vec locF)
4617d71ae5a4SJacob Faibussowitsch {
46183e9753d6SMatthew G. Knepley   DMField  coordField;
46193e9753d6SMatthew G. Knepley   DMLabel  depthLabel;
46203e9753d6SMatthew G. Knepley   IS       facetIS;
46213e9753d6SMatthew G. Knepley   PetscInt dim;
46223e9753d6SMatthew G. Knepley 
46233e9753d6SMatthew G. Knepley   PetscFunctionBegin;
46249566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dm, &dim));
46259566063dSJacob Faibussowitsch   PetscCall(DMPlexGetDepthLabel(dm, &depthLabel));
46269566063dSJacob Faibussowitsch   PetscCall(DMLabelGetStratumIS(depthLabel, dim - 1, &facetIS));
46279566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateField(dm, &coordField));
46289566063dSJacob Faibussowitsch   PetscCall(DMPlexComputeBdResidual_Single_Internal(dm, t, wf, key, locX, locX_t, locF, coordField, facetIS));
46299566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&facetIS));
46303ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
46313e9753d6SMatthew G. Knepley }
46323e9753d6SMatthew G. Knepley 
4633d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeBdResidual_Internal(DM dm, Vec locX, Vec locX_t, PetscReal t, Vec locF, void *user)
4634d71ae5a4SJacob Faibussowitsch {
46353e9753d6SMatthew G. Knepley   PetscDS  prob;
46363e9753d6SMatthew G. Knepley   PetscInt numBd, bd;
46373e9753d6SMatthew G. Knepley   DMField  coordField = NULL;
46383e9753d6SMatthew G. Knepley   IS       facetIS    = NULL;
46393e9753d6SMatthew G. Knepley   DMLabel  depthLabel;
46403e9753d6SMatthew G. Knepley   PetscInt dim;
46413e9753d6SMatthew G. Knepley 
46423e9753d6SMatthew G. Knepley   PetscFunctionBegin;
46439566063dSJacob Faibussowitsch   PetscCall(DMGetDS(dm, &prob));
46449566063dSJacob Faibussowitsch   PetscCall(DMPlexGetDepthLabel(dm, &depthLabel));
46459566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dm, &dim));
46469566063dSJacob Faibussowitsch   PetscCall(DMLabelGetStratumIS(depthLabel, dim - 1, &facetIS));
46479566063dSJacob Faibussowitsch   PetscCall(PetscDSGetNumBoundary(prob, &numBd));
46483e9753d6SMatthew G. Knepley   for (bd = 0; bd < numBd; ++bd) {
464945480ffeSMatthew G. Knepley     PetscWeakForm           wf;
46503e9753d6SMatthew G. Knepley     DMBoundaryConditionType type;
46513e9753d6SMatthew G. Knepley     DMLabel                 label;
46523e9753d6SMatthew G. Knepley     const PetscInt         *values;
46530c290148SMatthew G. Knepley     PetscInt                field, numValues, v;
46543e9753d6SMatthew G. Knepley     PetscObject             obj;
46553e9753d6SMatthew G. Knepley     PetscClassId            id;
46560c290148SMatthew G. Knepley     PetscFormKey            key;
46573e9753d6SMatthew G. Knepley 
46589566063dSJacob Faibussowitsch     PetscCall(PetscDSGetBoundary(prob, bd, &wf, &type, NULL, &label, &numValues, &values, &field, NULL, NULL, NULL, NULL, NULL));
46593d3e5d66SMatthew G. Knepley     if (type & DM_BC_ESSENTIAL) continue;
46609566063dSJacob Faibussowitsch     PetscCall(PetscDSGetDiscretization(prob, field, &obj));
46619566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetClassId(obj, &id));
46623d3e5d66SMatthew G. Knepley     if (id != PETSCFE_CLASSID) continue;
46633e9753d6SMatthew G. Knepley     if (!facetIS) {
46643e9753d6SMatthew G. Knepley       DMLabel  depthLabel;
46653e9753d6SMatthew G. Knepley       PetscInt dim;
46663e9753d6SMatthew G. Knepley 
46679566063dSJacob Faibussowitsch       PetscCall(DMPlexGetDepthLabel(dm, &depthLabel));
46689566063dSJacob Faibussowitsch       PetscCall(DMGetDimension(dm, &dim));
46699566063dSJacob Faibussowitsch       PetscCall(DMLabelGetStratumIS(depthLabel, dim - 1, &facetIS));
46703e9753d6SMatthew G. Knepley     }
46719566063dSJacob Faibussowitsch     PetscCall(DMGetCoordinateField(dm, &coordField));
46720c290148SMatthew G. Knepley     for (v = 0; v < numValues; ++v) {
46730c290148SMatthew G. Knepley       key.label = label;
46740c290148SMatthew G. Knepley       key.value = values[v];
46750c290148SMatthew G. Knepley       key.field = field;
46760c290148SMatthew G. Knepley       key.part  = 0;
46779566063dSJacob Faibussowitsch       PetscCall(DMPlexComputeBdResidual_Single_Internal(dm, t, wf, key, locX, locX_t, locF, coordField, facetIS));
46780c290148SMatthew G. Knepley     }
46793e9753d6SMatthew G. Knepley   }
46809566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&facetIS));
46813ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
46823e9753d6SMatthew G. Knepley }
46833e9753d6SMatthew G. Knepley 
4684d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeResidual_Internal(DM dm, PetscFormKey key, IS cellIS, PetscReal time, Vec locX, Vec locX_t, PetscReal t, Vec locF, void *user)
4685d71ae5a4SJacob Faibussowitsch {
46863e9753d6SMatthew G. Knepley   DM_Plex         *mesh       = (DM_Plex *)dm->data;
46873e9753d6SMatthew G. Knepley   const char      *name       = "Residual";
46883e9753d6SMatthew G. Knepley   DM               dmAux      = NULL;
46893e9753d6SMatthew G. Knepley   DM               dmGrad     = NULL;
46903e9753d6SMatthew G. Knepley   DMLabel          ghostLabel = NULL;
46916528b96dSMatthew G. Knepley   PetscDS          ds         = NULL;
46926528b96dSMatthew G. Knepley   PetscDS          dsAux      = NULL;
46933e9753d6SMatthew G. Knepley   PetscSection     section    = NULL;
46943e9753d6SMatthew G. Knepley   PetscBool        useFEM     = PETSC_FALSE;
46953e9753d6SMatthew G. Knepley   PetscBool        useFVM     = PETSC_FALSE;
46963e9753d6SMatthew G. Knepley   PetscBool        isImplicit = (locX_t || time == PETSC_MIN_REAL) ? PETSC_TRUE : PETSC_FALSE;
46973e9753d6SMatthew G. Knepley   PetscFV          fvm        = NULL;
46983e9753d6SMatthew G. Knepley   PetscFVCellGeom *cgeomFVM   = NULL;
46993e9753d6SMatthew G. Knepley   PetscFVFaceGeom *fgeomFVM   = NULL;
47003e9753d6SMatthew G. Knepley   DMField          coordField = NULL;
47013e9753d6SMatthew G. Knepley   Vec              locA, cellGeometryFVM = NULL, faceGeometryFVM = NULL, grad, locGrad = NULL;
47023e9753d6SMatthew G. Knepley   PetscScalar     *u = NULL, *u_t, *a, *uL, *uR;
47033e9753d6SMatthew G. Knepley   IS               chunkIS;
47043e9753d6SMatthew G. Knepley   const PetscInt  *cells;
47053e9753d6SMatthew G. Knepley   PetscInt         cStart, cEnd, numCells;
47063e9753d6SMatthew G. Knepley   PetscInt         Nf, f, totDim, totDimAux, numChunks, cellChunkSize, faceChunkSize, chunk, fStart, fEnd;
47073e9753d6SMatthew G. Knepley   PetscInt         maxDegree  = PETSC_MAX_INT;
47083e9753d6SMatthew G. Knepley   PetscQuadrature  affineQuad = NULL, *quads = NULL;
47093e9753d6SMatthew G. Knepley   PetscFEGeom     *affineGeom = NULL, **geoms = NULL;
47103e9753d6SMatthew G. Knepley 
47113e9753d6SMatthew G. Knepley   PetscFunctionBegin;
47123ba16761SJacob Faibussowitsch   if (!cellIS) PetscFunctionReturn(PETSC_SUCCESS);
4713437e83fbSMatthew G. Knepley   PetscCall(ISGetPointRange(cellIS, &cStart, &cEnd, &cells));
47143ba16761SJacob Faibussowitsch   if (cStart >= cEnd) PetscFunctionReturn(PETSC_SUCCESS);
47159566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(DMPLEX_ResidualFEM, dm, 0, 0, 0));
47163e9753d6SMatthew G. Knepley   /* TODO The places where we have to use isFE are probably the member functions for the PetscDisc class */
47173e9753d6SMatthew G. Knepley   /* TODO The FVM geometry is over-manipulated. Make the precalc functions return exactly what we need */
47183e9753d6SMatthew G. Knepley   /* FEM+FVM */
47199566063dSJacob Faibussowitsch   PetscCall(DMPlexGetHeightStratum(dm, 1, &fStart, &fEnd));
47203e9753d6SMatthew G. Knepley   /* 1: Get sizes from dm and dmAux */
47219566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dm, &section));
47229566063dSJacob Faibussowitsch   PetscCall(DMGetLabel(dm, "ghost", &ghostLabel));
472307218a29SMatthew G. Knepley   PetscCall(DMGetCellDS(dm, cells ? cells[cStart] : cStart, &ds, NULL));
47249566063dSJacob Faibussowitsch   PetscCall(PetscDSGetNumFields(ds, &Nf));
47259566063dSJacob Faibussowitsch   PetscCall(PetscDSGetTotalDimension(ds, &totDim));
47269566063dSJacob Faibussowitsch   PetscCall(DMGetAuxiliaryVec(dm, key.label, key.value, key.part, &locA));
47273e9753d6SMatthew G. Knepley   if (locA) {
47283e9753d6SMatthew G. Knepley     PetscInt subcell;
47299566063dSJacob Faibussowitsch     PetscCall(VecGetDM(locA, &dmAux));
47301059d808SMatthew G. Knepley     PetscCall(DMGetEnclosurePoint(dmAux, dm, DM_ENC_UNKNOWN, cells ? cells[cStart] : cStart, &subcell));
473107218a29SMatthew G. Knepley     PetscCall(DMGetCellDS(dmAux, subcell, &dsAux, NULL));
47329566063dSJacob Faibussowitsch     PetscCall(PetscDSGetTotalDimension(dsAux, &totDimAux));
47333e9753d6SMatthew G. Knepley   }
47343e9753d6SMatthew G. Knepley   /* 2: Get geometric data */
47353e9753d6SMatthew G. Knepley   for (f = 0; f < Nf; ++f) {
47363e9753d6SMatthew G. Knepley     PetscObject  obj;
47373e9753d6SMatthew G. Knepley     PetscClassId id;
47383e9753d6SMatthew G. Knepley     PetscBool    fimp;
47393e9753d6SMatthew G. Knepley 
47409566063dSJacob Faibussowitsch     PetscCall(PetscDSGetImplicit(ds, f, &fimp));
47413e9753d6SMatthew G. Knepley     if (isImplicit != fimp) continue;
47429566063dSJacob Faibussowitsch     PetscCall(PetscDSGetDiscretization(ds, f, &obj));
47439566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetClassId(obj, &id));
4744ad540459SPierre Jolivet     if (id == PETSCFE_CLASSID) useFEM = PETSC_TRUE;
47459371c9d4SSatish Balay     if (id == PETSCFV_CLASSID) {
47469371c9d4SSatish Balay       useFVM = PETSC_TRUE;
47479371c9d4SSatish Balay       fvm    = (PetscFV)obj;
47489371c9d4SSatish Balay     }
47493e9753d6SMatthew G. Knepley   }
47503e9753d6SMatthew G. Knepley   if (useFEM) {
47519566063dSJacob Faibussowitsch     PetscCall(DMGetCoordinateField(dm, &coordField));
47529566063dSJacob Faibussowitsch     PetscCall(DMFieldGetDegree(coordField, cellIS, NULL, &maxDegree));
47533e9753d6SMatthew G. Knepley     if (maxDegree <= 1) {
47549566063dSJacob Faibussowitsch       PetscCall(DMFieldCreateDefaultQuadrature(coordField, cellIS, &affineQuad));
475548a46eb9SPierre Jolivet       if (affineQuad) PetscCall(DMSNESGetFEGeom(coordField, cellIS, affineQuad, PETSC_FALSE, &affineGeom));
47563e9753d6SMatthew G. Knepley     } else {
47579566063dSJacob Faibussowitsch       PetscCall(PetscCalloc2(Nf, &quads, Nf, &geoms));
47583e9753d6SMatthew G. Knepley       for (f = 0; f < Nf; ++f) {
47593e9753d6SMatthew G. Knepley         PetscObject  obj;
47603e9753d6SMatthew G. Knepley         PetscClassId id;
47613e9753d6SMatthew G. Knepley         PetscBool    fimp;
47623e9753d6SMatthew G. Knepley 
47639566063dSJacob Faibussowitsch         PetscCall(PetscDSGetImplicit(ds, f, &fimp));
47643e9753d6SMatthew G. Knepley         if (isImplicit != fimp) continue;
47659566063dSJacob Faibussowitsch         PetscCall(PetscDSGetDiscretization(ds, f, &obj));
47669566063dSJacob Faibussowitsch         PetscCall(PetscObjectGetClassId(obj, &id));
47673e9753d6SMatthew G. Knepley         if (id == PETSCFE_CLASSID) {
47683e9753d6SMatthew G. Knepley           PetscFE fe = (PetscFE)obj;
47693e9753d6SMatthew G. Knepley 
47709566063dSJacob Faibussowitsch           PetscCall(PetscFEGetQuadrature(fe, &quads[f]));
47719566063dSJacob Faibussowitsch           PetscCall(PetscObjectReference((PetscObject)quads[f]));
47729566063dSJacob Faibussowitsch           PetscCall(DMSNESGetFEGeom(coordField, cellIS, quads[f], PETSC_FALSE, &geoms[f]));
47733e9753d6SMatthew G. Knepley         }
47743e9753d6SMatthew G. Knepley       }
47753e9753d6SMatthew G. Knepley     }
47763e9753d6SMatthew G. Knepley   }
47773e9753d6SMatthew G. Knepley   if (useFVM) {
47789566063dSJacob Faibussowitsch     PetscCall(DMPlexGetGeometryFVM(dm, &faceGeometryFVM, &cellGeometryFVM, NULL));
47799566063dSJacob Faibussowitsch     PetscCall(VecGetArrayRead(faceGeometryFVM, (const PetscScalar **)&fgeomFVM));
47809566063dSJacob Faibussowitsch     PetscCall(VecGetArrayRead(cellGeometryFVM, (const PetscScalar **)&cgeomFVM));
47813e9753d6SMatthew G. Knepley     /* Reconstruct and limit cell gradients */
47829566063dSJacob Faibussowitsch     PetscCall(DMPlexGetGradientDM(dm, fvm, &dmGrad));
47833e9753d6SMatthew G. Knepley     if (dmGrad) {
47849566063dSJacob Faibussowitsch       PetscCall(DMPlexGetHeightStratum(dm, 1, &fStart, &fEnd));
47859566063dSJacob Faibussowitsch       PetscCall(DMGetGlobalVector(dmGrad, &grad));
47869566063dSJacob Faibussowitsch       PetscCall(DMPlexReconstructGradients_Internal(dm, fvm, fStart, fEnd, faceGeometryFVM, cellGeometryFVM, locX, grad));
47873e9753d6SMatthew G. Knepley       /* Communicate gradient values */
47889566063dSJacob Faibussowitsch       PetscCall(DMGetLocalVector(dmGrad, &locGrad));
47899566063dSJacob Faibussowitsch       PetscCall(DMGlobalToLocalBegin(dmGrad, grad, INSERT_VALUES, locGrad));
47909566063dSJacob Faibussowitsch       PetscCall(DMGlobalToLocalEnd(dmGrad, grad, INSERT_VALUES, locGrad));
47919566063dSJacob Faibussowitsch       PetscCall(DMRestoreGlobalVector(dmGrad, &grad));
47923e9753d6SMatthew G. Knepley     }
47933e9753d6SMatthew G. Knepley     /* Handle non-essential (e.g. outflow) boundary values */
47949566063dSJacob Faibussowitsch     PetscCall(DMPlexInsertBoundaryValues(dm, PETSC_FALSE, locX, time, faceGeometryFVM, cellGeometryFVM, locGrad));
47953e9753d6SMatthew G. Knepley   }
47963e9753d6SMatthew G. Knepley   /* Loop over chunks */
47979566063dSJacob Faibussowitsch   if (useFEM) PetscCall(ISCreate(PETSC_COMM_SELF, &chunkIS));
47983e9753d6SMatthew G. Knepley   numCells      = cEnd - cStart;
47993e9753d6SMatthew G. Knepley   numChunks     = 1;
48003e9753d6SMatthew G. Knepley   cellChunkSize = numCells / numChunks;
48013e9753d6SMatthew G. Knepley   faceChunkSize = (fEnd - fStart) / numChunks;
48023e9753d6SMatthew G. Knepley   numChunks     = PetscMin(1, numCells);
48033e9753d6SMatthew G. Knepley   for (chunk = 0; chunk < numChunks; ++chunk) {
48043e9753d6SMatthew G. Knepley     PetscScalar     *elemVec, *fluxL, *fluxR;
48053e9753d6SMatthew G. Knepley     PetscReal       *vol;
48063e9753d6SMatthew G. Knepley     PetscFVFaceGeom *fgeom;
48073e9753d6SMatthew G. Knepley     PetscInt         cS = cStart + chunk * cellChunkSize, cE = PetscMin(cS + cellChunkSize, cEnd), numCells = cE - cS, c;
48083e9753d6SMatthew G. Knepley     PetscInt         fS = fStart + chunk * faceChunkSize, fE = PetscMin(fS + faceChunkSize, fEnd), numFaces = 0, face;
48093e9753d6SMatthew G. Knepley 
48103e9753d6SMatthew G. Knepley     /* Extract field coefficients */
48113e9753d6SMatthew G. Knepley     if (useFEM) {
48129566063dSJacob Faibussowitsch       PetscCall(ISGetPointSubrange(chunkIS, cS, cE, cells));
48139566063dSJacob Faibussowitsch       PetscCall(DMPlexGetCellFields(dm, chunkIS, locX, locX_t, locA, &u, &u_t, &a));
48149566063dSJacob Faibussowitsch       PetscCall(DMGetWorkArray(dm, numCells * totDim, MPIU_SCALAR, &elemVec));
48159566063dSJacob Faibussowitsch       PetscCall(PetscArrayzero(elemVec, numCells * totDim));
48163e9753d6SMatthew G. Knepley     }
48173e9753d6SMatthew G. Knepley     if (useFVM) {
48189566063dSJacob Faibussowitsch       PetscCall(DMPlexGetFaceFields(dm, fS, fE, locX, locX_t, faceGeometryFVM, cellGeometryFVM, locGrad, &numFaces, &uL, &uR));
48199566063dSJacob Faibussowitsch       PetscCall(DMPlexGetFaceGeometry(dm, fS, fE, faceGeometryFVM, cellGeometryFVM, &numFaces, &fgeom, &vol));
48209566063dSJacob Faibussowitsch       PetscCall(DMGetWorkArray(dm, numFaces * totDim, MPIU_SCALAR, &fluxL));
48219566063dSJacob Faibussowitsch       PetscCall(DMGetWorkArray(dm, numFaces * totDim, MPIU_SCALAR, &fluxR));
48229566063dSJacob Faibussowitsch       PetscCall(PetscArrayzero(fluxL, numFaces * totDim));
48239566063dSJacob Faibussowitsch       PetscCall(PetscArrayzero(fluxR, numFaces * totDim));
48243e9753d6SMatthew G. Knepley     }
48253e9753d6SMatthew G. Knepley     /* TODO We will interlace both our field coefficients (u, u_t, uL, uR, etc.) and our output (elemVec, fL, fR). I think this works */
48263e9753d6SMatthew G. Knepley     /* Loop over fields */
48273e9753d6SMatthew G. Knepley     for (f = 0; f < Nf; ++f) {
48283e9753d6SMatthew G. Knepley       PetscObject  obj;
48293e9753d6SMatthew G. Knepley       PetscClassId id;
48303e9753d6SMatthew G. Knepley       PetscBool    fimp;
48313e9753d6SMatthew G. Knepley       PetscInt     numChunks, numBatches, batchSize, numBlocks, blockSize, Ne, Nr, offset;
48323e9753d6SMatthew G. Knepley 
48336528b96dSMatthew G. Knepley       key.field = f;
48349566063dSJacob Faibussowitsch       PetscCall(PetscDSGetImplicit(ds, f, &fimp));
48353e9753d6SMatthew G. Knepley       if (isImplicit != fimp) continue;
48369566063dSJacob Faibussowitsch       PetscCall(PetscDSGetDiscretization(ds, f, &obj));
48379566063dSJacob Faibussowitsch       PetscCall(PetscObjectGetClassId(obj, &id));
48383e9753d6SMatthew G. Knepley       if (id == PETSCFE_CLASSID) {
48393e9753d6SMatthew G. Knepley         PetscFE         fe        = (PetscFE)obj;
48403e9753d6SMatthew G. Knepley         PetscFEGeom    *geom      = affineGeom ? affineGeom : geoms[f];
48413e9753d6SMatthew G. Knepley         PetscFEGeom    *chunkGeom = NULL;
48423e9753d6SMatthew G. Knepley         PetscQuadrature quad      = affineQuad ? affineQuad : quads[f];
48433e9753d6SMatthew G. Knepley         PetscInt        Nq, Nb;
48443e9753d6SMatthew G. Knepley 
48459566063dSJacob Faibussowitsch         PetscCall(PetscFEGetTileSizes(fe, NULL, &numBlocks, NULL, &numBatches));
48469566063dSJacob Faibussowitsch         PetscCall(PetscQuadratureGetData(quad, NULL, NULL, &Nq, NULL, NULL));
48479566063dSJacob Faibussowitsch         PetscCall(PetscFEGetDimension(fe, &Nb));
48483e9753d6SMatthew G. Knepley         blockSize = Nb;
48493e9753d6SMatthew G. Knepley         batchSize = numBlocks * blockSize;
48509566063dSJacob Faibussowitsch         PetscCall(PetscFESetTileSizes(fe, blockSize, numBlocks, batchSize, numBatches));
48513e9753d6SMatthew G. Knepley         numChunks = numCells / (numBatches * batchSize);
48523e9753d6SMatthew G. Knepley         Ne        = numChunks * numBatches * batchSize;
48533e9753d6SMatthew G. Knepley         Nr        = numCells % (numBatches * batchSize);
48543e9753d6SMatthew G. Knepley         offset    = numCells - Nr;
48553e9753d6SMatthew G. Knepley         /* Integrate FE residual to get elemVec (need fields at quadrature points) */
48563e9753d6SMatthew G. Knepley         /*   For FV, I think we use a P0 basis and the cell coefficients (for subdivided cells, we can tweak the basis tabulation to be the indicator function) */
48579566063dSJacob Faibussowitsch         PetscCall(PetscFEGeomGetChunk(geom, 0, offset, &chunkGeom));
48589566063dSJacob Faibussowitsch         PetscCall(PetscFEIntegrateResidual(ds, key, Ne, chunkGeom, u, u_t, dsAux, a, t, elemVec));
48599566063dSJacob Faibussowitsch         PetscCall(PetscFEGeomGetChunk(geom, offset, numCells, &chunkGeom));
48609566063dSJacob Faibussowitsch         PetscCall(PetscFEIntegrateResidual(ds, key, Nr, chunkGeom, &u[offset * totDim], u_t ? &u_t[offset * totDim] : NULL, dsAux, &a[offset * totDimAux], t, &elemVec[offset * totDim]));
48619566063dSJacob Faibussowitsch         PetscCall(PetscFEGeomRestoreChunk(geom, offset, numCells, &chunkGeom));
48623e9753d6SMatthew G. Knepley       } else if (id == PETSCFV_CLASSID) {
48633e9753d6SMatthew G. Knepley         PetscFV fv = (PetscFV)obj;
48643e9753d6SMatthew G. Knepley 
48653e9753d6SMatthew G. Knepley         Ne = numFaces;
48663e9753d6SMatthew G. Knepley         /* Riemann solve over faces (need fields at face centroids) */
48673e9753d6SMatthew G. Knepley         /*   We need to evaluate FE fields at those coordinates */
48689566063dSJacob Faibussowitsch         PetscCall(PetscFVIntegrateRHSFunction(fv, ds, f, Ne, fgeom, vol, uL, uR, fluxL, fluxR));
486963a3b9bcSJacob Faibussowitsch       } else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, f);
48703e9753d6SMatthew G. Knepley     }
48713e9753d6SMatthew G. Knepley     /* Loop over domain */
48723e9753d6SMatthew G. Knepley     if (useFEM) {
48733e9753d6SMatthew G. Knepley       /* Add elemVec to locX */
48743e9753d6SMatthew G. Knepley       for (c = cS; c < cE; ++c) {
48753e9753d6SMatthew G. Knepley         const PetscInt cell = cells ? cells[c] : c;
48763e9753d6SMatthew G. Knepley         const PetscInt cind = c - cStart;
48773e9753d6SMatthew G. Knepley 
48789566063dSJacob Faibussowitsch         if (mesh->printFEM > 1) PetscCall(DMPrintCellVector(cell, name, totDim, &elemVec[cind * totDim]));
48793e9753d6SMatthew G. Knepley         if (ghostLabel) {
48803e9753d6SMatthew G. Knepley           PetscInt ghostVal;
48813e9753d6SMatthew G. Knepley 
48829566063dSJacob Faibussowitsch           PetscCall(DMLabelGetValue(ghostLabel, cell, &ghostVal));
48833e9753d6SMatthew G. Knepley           if (ghostVal > 0) continue;
48843e9753d6SMatthew G. Knepley         }
48859566063dSJacob Faibussowitsch         PetscCall(DMPlexVecSetClosure(dm, section, locF, cell, &elemVec[cind * totDim], ADD_ALL_VALUES));
48863e9753d6SMatthew G. Knepley       }
48873e9753d6SMatthew G. Knepley     }
48883e9753d6SMatthew G. Knepley     if (useFVM) {
48893e9753d6SMatthew G. Knepley       PetscScalar *fa;
48903e9753d6SMatthew G. Knepley       PetscInt     iface;
48913e9753d6SMatthew G. Knepley 
48929566063dSJacob Faibussowitsch       PetscCall(VecGetArray(locF, &fa));
48933e9753d6SMatthew G. Knepley       for (f = 0; f < Nf; ++f) {
48943e9753d6SMatthew G. Knepley         PetscFV      fv;
48953e9753d6SMatthew G. Knepley         PetscObject  obj;
48963e9753d6SMatthew G. Knepley         PetscClassId id;
48973e9753d6SMatthew G. Knepley         PetscInt     foff, pdim;
48983e9753d6SMatthew G. Knepley 
48999566063dSJacob Faibussowitsch         PetscCall(PetscDSGetDiscretization(ds, f, &obj));
49009566063dSJacob Faibussowitsch         PetscCall(PetscDSGetFieldOffset(ds, f, &foff));
49019566063dSJacob Faibussowitsch         PetscCall(PetscObjectGetClassId(obj, &id));
49023e9753d6SMatthew G. Knepley         if (id != PETSCFV_CLASSID) continue;
49033e9753d6SMatthew G. Knepley         fv = (PetscFV)obj;
49049566063dSJacob Faibussowitsch         PetscCall(PetscFVGetNumComponents(fv, &pdim));
49053e9753d6SMatthew G. Knepley         /* Accumulate fluxes to cells */
49063e9753d6SMatthew G. Knepley         for (face = fS, iface = 0; face < fE; ++face) {
49073e9753d6SMatthew G. Knepley           const PetscInt *scells;
49083e9753d6SMatthew G. Knepley           PetscScalar    *fL = NULL, *fR = NULL;
49093e9753d6SMatthew G. Knepley           PetscInt        ghost, d, nsupp, nchild;
49103e9753d6SMatthew G. Knepley 
49119566063dSJacob Faibussowitsch           PetscCall(DMLabelGetValue(ghostLabel, face, &ghost));
49129566063dSJacob Faibussowitsch           PetscCall(DMPlexGetSupportSize(dm, face, &nsupp));
49139566063dSJacob Faibussowitsch           PetscCall(DMPlexGetTreeChildren(dm, face, &nchild, NULL));
49143e9753d6SMatthew G. Knepley           if (ghost >= 0 || nsupp > 2 || nchild > 0) continue;
49159566063dSJacob Faibussowitsch           PetscCall(DMPlexGetSupport(dm, face, &scells));
49169566063dSJacob Faibussowitsch           PetscCall(DMLabelGetValue(ghostLabel, scells[0], &ghost));
49179566063dSJacob Faibussowitsch           if (ghost <= 0) PetscCall(DMPlexPointLocalFieldRef(dm, scells[0], f, fa, &fL));
49189566063dSJacob Faibussowitsch           PetscCall(DMLabelGetValue(ghostLabel, scells[1], &ghost));
49199566063dSJacob Faibussowitsch           if (ghost <= 0) PetscCall(DMPlexPointLocalFieldRef(dm, scells[1], f, fa, &fR));
49203e9753d6SMatthew G. Knepley           for (d = 0; d < pdim; ++d) {
49213e9753d6SMatthew G. Knepley             if (fL) fL[d] -= fluxL[iface * totDim + foff + d];
49223e9753d6SMatthew G. Knepley             if (fR) fR[d] += fluxR[iface * totDim + foff + d];
49233e9753d6SMatthew G. Knepley           }
49243e9753d6SMatthew G. Knepley           ++iface;
49253e9753d6SMatthew G. Knepley         }
49263e9753d6SMatthew G. Knepley       }
49279566063dSJacob Faibussowitsch       PetscCall(VecRestoreArray(locF, &fa));
49283e9753d6SMatthew G. Knepley     }
49293e9753d6SMatthew G. Knepley     /* Handle time derivative */
49303e9753d6SMatthew G. Knepley     if (locX_t) {
49313e9753d6SMatthew G. Knepley       PetscScalar *x_t, *fa;
49323e9753d6SMatthew G. Knepley 
49339566063dSJacob Faibussowitsch       PetscCall(VecGetArray(locF, &fa));
49349566063dSJacob Faibussowitsch       PetscCall(VecGetArray(locX_t, &x_t));
49353e9753d6SMatthew G. Knepley       for (f = 0; f < Nf; ++f) {
49363e9753d6SMatthew G. Knepley         PetscFV      fv;
49373e9753d6SMatthew G. Knepley         PetscObject  obj;
49383e9753d6SMatthew G. Knepley         PetscClassId id;
49393e9753d6SMatthew G. Knepley         PetscInt     pdim, d;
49403e9753d6SMatthew G. Knepley 
49419566063dSJacob Faibussowitsch         PetscCall(PetscDSGetDiscretization(ds, f, &obj));
49429566063dSJacob Faibussowitsch         PetscCall(PetscObjectGetClassId(obj, &id));
49433e9753d6SMatthew G. Knepley         if (id != PETSCFV_CLASSID) continue;
49443e9753d6SMatthew G. Knepley         fv = (PetscFV)obj;
49459566063dSJacob Faibussowitsch         PetscCall(PetscFVGetNumComponents(fv, &pdim));
49463e9753d6SMatthew G. Knepley         for (c = cS; c < cE; ++c) {
49473e9753d6SMatthew G. Knepley           const PetscInt cell = cells ? cells[c] : c;
49483e9753d6SMatthew G. Knepley           PetscScalar   *u_t, *r;
49493e9753d6SMatthew G. Knepley 
49503e9753d6SMatthew G. Knepley           if (ghostLabel) {
49513e9753d6SMatthew G. Knepley             PetscInt ghostVal;
49523e9753d6SMatthew G. Knepley 
49539566063dSJacob Faibussowitsch             PetscCall(DMLabelGetValue(ghostLabel, cell, &ghostVal));
49543e9753d6SMatthew G. Knepley             if (ghostVal > 0) continue;
49553e9753d6SMatthew G. Knepley           }
49569566063dSJacob Faibussowitsch           PetscCall(DMPlexPointLocalFieldRead(dm, cell, f, x_t, &u_t));
49579566063dSJacob Faibussowitsch           PetscCall(DMPlexPointLocalFieldRef(dm, cell, f, fa, &r));
49583e9753d6SMatthew G. Knepley           for (d = 0; d < pdim; ++d) r[d] += u_t[d];
49593e9753d6SMatthew G. Knepley         }
49603e9753d6SMatthew G. Knepley       }
49619566063dSJacob Faibussowitsch       PetscCall(VecRestoreArray(locX_t, &x_t));
49629566063dSJacob Faibussowitsch       PetscCall(VecRestoreArray(locF, &fa));
49633e9753d6SMatthew G. Knepley     }
49643e9753d6SMatthew G. Knepley     if (useFEM) {
49659566063dSJacob Faibussowitsch       PetscCall(DMPlexRestoreCellFields(dm, chunkIS, locX, locX_t, locA, &u, &u_t, &a));
49669566063dSJacob Faibussowitsch       PetscCall(DMRestoreWorkArray(dm, numCells * totDim, MPIU_SCALAR, &elemVec));
49673e9753d6SMatthew G. Knepley     }
49683e9753d6SMatthew G. Knepley     if (useFVM) {
49699566063dSJacob Faibussowitsch       PetscCall(DMPlexRestoreFaceFields(dm, fS, fE, locX, locX_t, faceGeometryFVM, cellGeometryFVM, locGrad, &numFaces, &uL, &uR));
49709566063dSJacob Faibussowitsch       PetscCall(DMPlexRestoreFaceGeometry(dm, fS, fE, faceGeometryFVM, cellGeometryFVM, &numFaces, &fgeom, &vol));
49719566063dSJacob Faibussowitsch       PetscCall(DMRestoreWorkArray(dm, numFaces * totDim, MPIU_SCALAR, &fluxL));
49729566063dSJacob Faibussowitsch       PetscCall(DMRestoreWorkArray(dm, numFaces * totDim, MPIU_SCALAR, &fluxR));
49739566063dSJacob Faibussowitsch       if (dmGrad) PetscCall(DMRestoreLocalVector(dmGrad, &locGrad));
49743e9753d6SMatthew G. Knepley     }
49753e9753d6SMatthew G. Knepley   }
49769566063dSJacob Faibussowitsch   if (useFEM) PetscCall(ISDestroy(&chunkIS));
49779566063dSJacob Faibussowitsch   PetscCall(ISRestorePointRange(cellIS, &cStart, &cEnd, &cells));
49783e9753d6SMatthew G. Knepley 
49793e9753d6SMatthew G. Knepley   if (useFEM) {
49809566063dSJacob Faibussowitsch     PetscCall(DMPlexComputeBdResidual_Internal(dm, locX, locX_t, t, locF, user));
49813e9753d6SMatthew G. Knepley 
49823e9753d6SMatthew G. Knepley     if (maxDegree <= 1) {
49839566063dSJacob Faibussowitsch       PetscCall(DMSNESRestoreFEGeom(coordField, cellIS, affineQuad, PETSC_FALSE, &affineGeom));
49849566063dSJacob Faibussowitsch       PetscCall(PetscQuadratureDestroy(&affineQuad));
49853e9753d6SMatthew G. Knepley     } else {
49863e9753d6SMatthew G. Knepley       for (f = 0; f < Nf; ++f) {
49879566063dSJacob Faibussowitsch         PetscCall(DMSNESRestoreFEGeom(coordField, cellIS, quads[f], PETSC_FALSE, &geoms[f]));
49889566063dSJacob Faibussowitsch         PetscCall(PetscQuadratureDestroy(&quads[f]));
49893e9753d6SMatthew G. Knepley       }
49909566063dSJacob Faibussowitsch       PetscCall(PetscFree2(quads, geoms));
49913e9753d6SMatthew G. Knepley     }
49923e9753d6SMatthew G. Knepley   }
49933e9753d6SMatthew G. Knepley 
49943e9753d6SMatthew G. Knepley   /* FEM */
49953e9753d6SMatthew G. Knepley   /* 1: Get sizes from dm and dmAux */
49963e9753d6SMatthew G. Knepley   /* 2: Get geometric data */
49973e9753d6SMatthew G. Knepley   /* 3: Handle boundary values */
49983e9753d6SMatthew G. Knepley   /* 4: Loop over domain */
49993e9753d6SMatthew G. Knepley   /*   Extract coefficients */
50003e9753d6SMatthew G. Knepley   /* Loop over fields */
50013e9753d6SMatthew G. Knepley   /*   Set tiling for FE*/
50023e9753d6SMatthew G. Knepley   /*   Integrate FE residual to get elemVec */
50033e9753d6SMatthew G. Knepley   /*     Loop over subdomain */
50043e9753d6SMatthew G. Knepley   /*       Loop over quad points */
50053e9753d6SMatthew G. Knepley   /*         Transform coords to real space */
50063e9753d6SMatthew G. Knepley   /*         Evaluate field and aux fields at point */
50073e9753d6SMatthew G. Knepley   /*         Evaluate residual at point */
50083e9753d6SMatthew G. Knepley   /*         Transform residual to real space */
50093e9753d6SMatthew G. Knepley   /*       Add residual to elemVec */
50103e9753d6SMatthew G. Knepley   /* Loop over domain */
50113e9753d6SMatthew G. Knepley   /*   Add elemVec to locX */
50123e9753d6SMatthew G. Knepley 
50133e9753d6SMatthew G. Knepley   /* FVM */
50143e9753d6SMatthew G. Knepley   /* Get geometric data */
50153e9753d6SMatthew G. Knepley   /* If using gradients */
50163e9753d6SMatthew G. Knepley   /*   Compute gradient data */
50173e9753d6SMatthew G. Knepley   /*   Loop over domain faces */
50183e9753d6SMatthew G. Knepley   /*     Count computational faces */
50193e9753d6SMatthew G. Knepley   /*     Reconstruct cell gradient */
50203e9753d6SMatthew G. Knepley   /*   Loop over domain cells */
50213e9753d6SMatthew G. Knepley   /*     Limit cell gradients */
50223e9753d6SMatthew G. Knepley   /* Handle boundary values */
50233e9753d6SMatthew G. Knepley   /* Loop over domain faces */
50243e9753d6SMatthew G. Knepley   /*   Read out field, centroid, normal, volume for each side of face */
50253e9753d6SMatthew G. Knepley   /* Riemann solve over faces */
50263e9753d6SMatthew G. Knepley   /* Loop over domain faces */
50273e9753d6SMatthew G. Knepley   /*   Accumulate fluxes to cells */
50283e9753d6SMatthew G. Knepley   /* TODO Change printFEM to printDisc here */
50293e9753d6SMatthew G. Knepley   if (mesh->printFEM) {
50303e9753d6SMatthew G. Knepley     Vec          locFbc;
50313e9753d6SMatthew G. Knepley     PetscInt     pStart, pEnd, p, maxDof;
50323e9753d6SMatthew G. Knepley     PetscScalar *zeroes;
50333e9753d6SMatthew G. Knepley 
50349566063dSJacob Faibussowitsch     PetscCall(VecDuplicate(locF, &locFbc));
50359566063dSJacob Faibussowitsch     PetscCall(VecCopy(locF, locFbc));
50369566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetChart(section, &pStart, &pEnd));
50379566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetMaxDof(section, &maxDof));
50389566063dSJacob Faibussowitsch     PetscCall(PetscCalloc1(maxDof, &zeroes));
503948a46eb9SPierre Jolivet     for (p = pStart; p < pEnd; p++) PetscCall(VecSetValuesSection(locFbc, section, p, zeroes, INSERT_BC_VALUES));
50409566063dSJacob Faibussowitsch     PetscCall(PetscFree(zeroes));
50419566063dSJacob Faibussowitsch     PetscCall(DMPrintLocalVec(dm, name, mesh->printTol, locFbc));
50429566063dSJacob Faibussowitsch     PetscCall(VecDestroy(&locFbc));
50433e9753d6SMatthew G. Knepley   }
50449566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(DMPLEX_ResidualFEM, dm, 0, 0, 0));
50453ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
50463e9753d6SMatthew G. Knepley }
50473e9753d6SMatthew G. Knepley 
50486528b96dSMatthew G. Knepley /*
50496528b96dSMatthew G. Knepley   1) Allow multiple kernels for BdResidual for hybrid DS
50506528b96dSMatthew G. Knepley 
50516528b96dSMatthew G. Knepley   DONE 2) Get out dsAux for either side at the same time as cohesive cell dsAux
50526528b96dSMatthew G. Knepley 
50536528b96dSMatthew G. Knepley   DONE 3) Change DMGetCellFields() to get different aux data a[] for each side
50546528b96dSMatthew G. Knepley      - I think I just need to replace a[] with the closure from each face
50556528b96dSMatthew G. Knepley 
50566528b96dSMatthew G. Knepley   4) Run both kernels for each non-hybrid field with correct dsAux, and then hybrid field as before
50576528b96dSMatthew G. Knepley */
5058d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeResidual_Hybrid_Internal(DM dm, PetscFormKey key[], IS cellIS, PetscReal time, Vec locX, Vec locX_t, PetscReal t, Vec locF, void *user)
5059d71ae5a4SJacob Faibussowitsch {
50603e9753d6SMatthew G. Knepley   DM_Plex        *mesh       = (DM_Plex *)dm->data;
50613e9753d6SMatthew G. Knepley   const char     *name       = "Hybrid Residual";
506204c51a94SMatthew G. Knepley   DM              dmAux[3]   = {NULL, NULL, NULL};
50633e9753d6SMatthew G. Knepley   DMLabel         ghostLabel = NULL;
50646528b96dSMatthew G. Knepley   PetscDS         ds         = NULL;
506507218a29SMatthew G. Knepley   PetscDS         dsIn       = NULL;
50666528b96dSMatthew G. Knepley   PetscDS         dsAux[3]   = {NULL, NULL, NULL};
506704c51a94SMatthew G. Knepley   Vec             locA[3]    = {NULL, NULL, NULL};
506807218a29SMatthew G. Knepley   DM              dmScale[3] = {NULL, NULL, NULL};
506907218a29SMatthew G. Knepley   PetscDS         dsScale[3] = {NULL, NULL, NULL};
507007218a29SMatthew G. Knepley   Vec             locS[3]    = {NULL, NULL, NULL};
50713e9753d6SMatthew G. Knepley   PetscSection    section    = NULL;
50723e9753d6SMatthew G. Knepley   DMField         coordField = NULL;
507307218a29SMatthew G. Knepley   PetscScalar    *a[3]       = {NULL, NULL, NULL};
507407218a29SMatthew G. Knepley   PetscScalar    *s[3]       = {NULL, NULL, NULL};
5075b2ab40e6SMatthew G. Knepley   PetscScalar    *u          = NULL, *u_t;
507607218a29SMatthew G. Knepley   PetscScalar    *elemVecNeg, *elemVecPos, *elemVecCoh;
50773e9753d6SMatthew G. Knepley   IS              chunkIS;
50783e9753d6SMatthew G. Knepley   const PetscInt *cells;
50793e9753d6SMatthew G. Knepley   PetscInt       *faces;
50803e9753d6SMatthew G. Knepley   PetscInt        cStart, cEnd, numCells;
5081*3e2b0218SMatthew G. Knepley   PetscInt        Nf, f, totDim, totDimIn, totDimAux[3], totDimScale[3], numChunks, cellChunkSize, chunk;
50823e9753d6SMatthew G. Knepley   PetscInt        maxDegree  = PETSC_MAX_INT;
50833e9753d6SMatthew G. Knepley   PetscQuadrature affineQuad = NULL, *quads = NULL;
50843e9753d6SMatthew G. Knepley   PetscFEGeom    *affineGeom = NULL, **geoms = NULL;
50853e9753d6SMatthew G. Knepley 
50863e9753d6SMatthew G. Knepley   PetscFunctionBegin;
50873ba16761SJacob Faibussowitsch   if (!cellIS) PetscFunctionReturn(PETSC_SUCCESS);
5088437e83fbSMatthew G. Knepley   PetscCall(ISGetPointRange(cellIS, &cStart, &cEnd, &cells));
5089437e83fbSMatthew G. Knepley   PetscCall(ISGetLocalSize(cellIS, &numCells));
50903ba16761SJacob Faibussowitsch   if (cStart >= cEnd) PetscFunctionReturn(PETSC_SUCCESS);
50915fedec97SMatthew G. Knepley   if ((key[0].label == key[1].label) && (key[0].value == key[1].value) && (key[0].part == key[1].part)) {
50925fedec97SMatthew G. Knepley     const char *name;
50939566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetName((PetscObject)key[0].label, &name));
509463a3b9bcSJacob Faibussowitsch     SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Form keys for each side of a cohesive surface must be different (%s, %" PetscInt_FMT ", %" PetscInt_FMT ")", name, key[0].value, key[0].part);
50955fedec97SMatthew G. Knepley   }
50969566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(DMPLEX_ResidualFEM, dm, 0, 0, 0));
50973e9753d6SMatthew G. Knepley   /* TODO The places where we have to use isFE are probably the member functions for the PetscDisc class */
50983e9753d6SMatthew G. Knepley   /* FEM */
50993e9753d6SMatthew G. Knepley   /* 1: Get sizes from dm and dmAux */
51009566063dSJacob Faibussowitsch   PetscCall(DMGetSection(dm, &section));
51019566063dSJacob Faibussowitsch   PetscCall(DMGetLabel(dm, "ghost", &ghostLabel));
510207218a29SMatthew G. Knepley   PetscCall(DMGetCellDS(dm, cells ? cells[cStart] : cStart, &ds, &dsIn));
51039566063dSJacob Faibussowitsch   PetscCall(PetscDSGetNumFields(ds, &Nf));
51049566063dSJacob Faibussowitsch   PetscCall(PetscDSGetTotalDimension(ds, &totDim));
510507218a29SMatthew G. Knepley   PetscCall(PetscDSGetTotalDimension(dsIn, &totDimIn));
51069566063dSJacob Faibussowitsch   PetscCall(DMGetAuxiliaryVec(dm, key[2].label, key[2].value, key[2].part, &locA[2]));
510704c51a94SMatthew G. Knepley   if (locA[2]) {
51081059d808SMatthew G. Knepley     const PetscInt cellStart = cells ? cells[cStart] : cStart;
51091059d808SMatthew G. Knepley 
51109566063dSJacob Faibussowitsch     PetscCall(VecGetDM(locA[2], &dmAux[2]));
511107218a29SMatthew G. Knepley     PetscCall(DMGetCellDS(dmAux[2], cellStart, &dsAux[2], NULL));
51129566063dSJacob Faibussowitsch     PetscCall(PetscDSGetTotalDimension(dsAux[2], &totDimAux[2]));
51136528b96dSMatthew G. Knepley     {
51146528b96dSMatthew G. Knepley       const PetscInt *cone;
51156528b96dSMatthew G. Knepley       PetscInt        c;
51166528b96dSMatthew G. Knepley 
51171059d808SMatthew G. Knepley       PetscCall(DMPlexGetCone(dm, cellStart, &cone));
51186528b96dSMatthew G. Knepley       for (c = 0; c < 2; ++c) {
51196528b96dSMatthew G. Knepley         const PetscInt *support;
51206528b96dSMatthew G. Knepley         PetscInt        ssize, s;
51216528b96dSMatthew G. Knepley 
51229566063dSJacob Faibussowitsch         PetscCall(DMPlexGetSupport(dm, cone[c], &support));
51239566063dSJacob Faibussowitsch         PetscCall(DMPlexGetSupportSize(dm, cone[c], &ssize));
51241059d808SMatthew G. Knepley         PetscCheck(ssize == 2, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Face %" PetscInt_FMT " from cell %" PetscInt_FMT " has support size %" PetscInt_FMT " != 2", cone[c], cellStart, ssize);
51251059d808SMatthew G. Knepley         if (support[0] == cellStart) s = 1;
51261059d808SMatthew G. Knepley         else if (support[1] == cellStart) s = 0;
51271059d808SMatthew G. Knepley         else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Face %" PetscInt_FMT " does not have cell %" PetscInt_FMT " in its support", cone[c], cellStart);
51289566063dSJacob Faibussowitsch         PetscCall(DMGetAuxiliaryVec(dm, key[c].label, key[c].value, key[c].part, &locA[c]));
5129c75bfeddSPierre Jolivet         PetscCheck(locA[c], PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Must have auxiliary vector for (%p, %" PetscInt_FMT ", %" PetscInt_FMT ")", (void *)key[c].label, key[c].value, key[c].part);
51309566063dSJacob Faibussowitsch         if (locA[c]) PetscCall(VecGetDM(locA[c], &dmAux[c]));
5131ad540459SPierre Jolivet         else dmAux[c] = dmAux[2];
513207218a29SMatthew G. Knepley         PetscCall(DMGetCellDS(dmAux[c], support[s], &dsAux[c], NULL));
51339566063dSJacob Faibussowitsch         PetscCall(PetscDSGetTotalDimension(dsAux[c], &totDimAux[c]));
51346528b96dSMatthew G. Knepley       }
51356528b96dSMatthew G. Knepley     }
51363e9753d6SMatthew G. Knepley   }
513707218a29SMatthew G. Knepley   /* Handle mass matrix scaling
513807218a29SMatthew G. Knepley        The field in key[2] is the field to be scaled, and the scaling field is the first in the dsScale */
513907218a29SMatthew G. Knepley   PetscCall(DMGetAuxiliaryVec(dm, key[2].label, -key[2].value, key[2].part, &locS[2]));
514007218a29SMatthew G. Knepley   if (locS[2]) {
5141*3e2b0218SMatthew G. Knepley     const PetscInt cellStart = cells ? cells[cStart] : cStart;
514207218a29SMatthew G. Knepley     PetscInt       Nb, Nbs;
514307218a29SMatthew G. Knepley 
514407218a29SMatthew G. Knepley     PetscCall(VecGetDM(locS[2], &dmScale[2]));
5145*3e2b0218SMatthew G. Knepley     PetscCall(DMGetCellDS(dmScale[2], cellStart, &dsScale[2], NULL));
5146*3e2b0218SMatthew G. Knepley     PetscCall(PetscDSGetTotalDimension(dsScale[2], &totDimScale[2]));
514707218a29SMatthew G. Knepley     // BRAD: This is not set correctly
514807218a29SMatthew G. Knepley     key[2].field = 2;
514907218a29SMatthew G. Knepley     PetscCall(PetscDSGetFieldSize(ds, key[2].field, &Nb));
515007218a29SMatthew G. Knepley     PetscCall(PetscDSGetFieldSize(dsScale[2], 0, &Nbs));
515107218a29SMatthew G. Knepley     PetscCheck(Nb == Nbs, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "Field %" PetscInt_FMT " of size %" PetscInt_FMT " cannot be scaled by field of size %" PetscInt_FMT, key[2].field, Nb, Nbs);
5152*3e2b0218SMatthew G. Knepley     {
5153*3e2b0218SMatthew G. Knepley       const PetscInt *cone;
5154*3e2b0218SMatthew G. Knepley       PetscInt        c;
5155*3e2b0218SMatthew G. Knepley 
5156*3e2b0218SMatthew G. Knepley       locS[1] = locS[0] = locS[2];
5157*3e2b0218SMatthew G. Knepley       dmScale[1] = dmScale[0] = dmScale[2];
5158*3e2b0218SMatthew G. Knepley       PetscCall(DMPlexGetCone(dm, cellStart, &cone));
5159*3e2b0218SMatthew G. Knepley       for (c = 0; c < 2; ++c) {
5160*3e2b0218SMatthew G. Knepley         const PetscInt *support;
5161*3e2b0218SMatthew G. Knepley         PetscInt        ssize, s;
5162*3e2b0218SMatthew G. Knepley 
5163*3e2b0218SMatthew G. Knepley         PetscCall(DMPlexGetSupport(dm, cone[c], &support));
5164*3e2b0218SMatthew G. Knepley         PetscCall(DMPlexGetSupportSize(dm, cone[c], &ssize));
5165*3e2b0218SMatthew G. Knepley         PetscCheck(ssize == 2, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Face %" PetscInt_FMT " from cell %" PetscInt_FMT " has support size %" PetscInt_FMT " != 2", cone[c], cellStart, ssize);
5166*3e2b0218SMatthew G. Knepley         if (support[0] == cellStart) s = 1;
5167*3e2b0218SMatthew G. Knepley         else if (support[1] == cellStart) s = 0;
5168*3e2b0218SMatthew G. Knepley         else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Face %" PetscInt_FMT " does not have cell %" PetscInt_FMT " in its support", cone[c], cellStart);
5169*3e2b0218SMatthew G. Knepley         PetscCall(DMGetCellDS(dmScale[c], support[s], &dsScale[c], NULL));
5170*3e2b0218SMatthew G. Knepley         PetscCall(PetscDSGetTotalDimension(dsScale[c], &totDimScale[c]));
5171*3e2b0218SMatthew G. Knepley       }
5172*3e2b0218SMatthew G. Knepley     }
517307218a29SMatthew G. Knepley   }
51743e9753d6SMatthew G. Knepley   /* 2: Setup geometric data */
51759566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateField(dm, &coordField));
51769566063dSJacob Faibussowitsch   PetscCall(DMFieldGetDegree(coordField, cellIS, NULL, &maxDegree));
51773e9753d6SMatthew G. Knepley   if (maxDegree > 1) {
51789566063dSJacob Faibussowitsch     PetscCall(PetscCalloc2(Nf, &quads, Nf, &geoms));
51793e9753d6SMatthew G. Knepley     for (f = 0; f < Nf; ++f) {
51803e9753d6SMatthew G. Knepley       PetscFE fe;
51813e9753d6SMatthew G. Knepley 
51829566063dSJacob Faibussowitsch       PetscCall(PetscDSGetDiscretization(ds, f, (PetscObject *)&fe));
51833e9753d6SMatthew G. Knepley       if (fe) {
51849566063dSJacob Faibussowitsch         PetscCall(PetscFEGetQuadrature(fe, &quads[f]));
51859566063dSJacob Faibussowitsch         PetscCall(PetscObjectReference((PetscObject)quads[f]));
51863e9753d6SMatthew G. Knepley       }
51873e9753d6SMatthew G. Knepley     }
51883e9753d6SMatthew G. Knepley   }
51893e9753d6SMatthew G. Knepley   /* Loop over chunks */
51903e9753d6SMatthew G. Knepley   cellChunkSize = numCells;
51913e9753d6SMatthew G. Knepley   numChunks     = !numCells ? 0 : PetscCeilReal(((PetscReal)numCells) / cellChunkSize);
519207218a29SMatthew G. Knepley   PetscCall(PetscCalloc1(2 * cellChunkSize, &faces));
519307218a29SMatthew G. Knepley   PetscCall(ISCreateGeneral(PETSC_COMM_SELF, 2 * cellChunkSize, faces, PETSC_USE_POINTER, &chunkIS));
51943e9753d6SMatthew G. Knepley   /* Extract field coefficients */
51953e9753d6SMatthew G. Knepley   /* NOTE This needs the end cap faces to have identical orientations */
519607218a29SMatthew G. Knepley   PetscCall(DMPlexGetHybridCellFields(dm, cellIS, locX, locX_t, locA[2], &u, &u_t, &a[2]));
519707218a29SMatthew G. Knepley   PetscCall(DMPlexGetHybridFields(dm, dmAux, dsAux, cellIS, locA, PETSC_TRUE, a));
5198*3e2b0218SMatthew G. Knepley   PetscCall(DMPlexGetHybridFields(dm, dmScale, dsScale, cellIS, locS, PETSC_TRUE, s));
519907218a29SMatthew G. Knepley   PetscCall(DMGetWorkArray(dm, cellChunkSize * totDim, MPIU_SCALAR, &elemVecNeg));
520007218a29SMatthew G. Knepley   PetscCall(DMGetWorkArray(dm, cellChunkSize * totDim, MPIU_SCALAR, &elemVecPos));
520107218a29SMatthew G. Knepley   PetscCall(DMGetWorkArray(dm, cellChunkSize * totDim, MPIU_SCALAR, &elemVecCoh));
52023e9753d6SMatthew G. Knepley   for (chunk = 0; chunk < numChunks; ++chunk) {
52033e9753d6SMatthew G. Knepley     PetscInt cS = cStart + chunk * cellChunkSize, cE = PetscMin(cS + cellChunkSize, cEnd), numCells = cE - cS, c;
52043e9753d6SMatthew G. Knepley 
520507218a29SMatthew G. Knepley     PetscCall(PetscArrayzero(elemVecNeg, cellChunkSize * totDim));
520607218a29SMatthew G. Knepley     PetscCall(PetscArrayzero(elemVecPos, cellChunkSize * totDim));
520707218a29SMatthew G. Knepley     PetscCall(PetscArrayzero(elemVecCoh, cellChunkSize * totDim));
52083e9753d6SMatthew G. Knepley     /* Get faces */
52093e9753d6SMatthew G. Knepley     for (c = cS; c < cE; ++c) {
52103e9753d6SMatthew G. Knepley       const PetscInt  cell = cells ? cells[c] : c;
52113e9753d6SMatthew G. Knepley       const PetscInt *cone;
52129566063dSJacob Faibussowitsch       PetscCall(DMPlexGetCone(dm, cell, &cone));
521307218a29SMatthew G. Knepley       faces[(c - cS) * 2 + 0] = cone[0];
521407218a29SMatthew G. Knepley       faces[(c - cS) * 2 + 1] = cone[1];
52153e9753d6SMatthew G. Knepley     }
521607218a29SMatthew G. Knepley     PetscCall(ISGeneralSetIndices(chunkIS, 2 * cellChunkSize, faces, PETSC_USE_POINTER));
52173e9753d6SMatthew G. Knepley     /* Get geometric data */
52183e9753d6SMatthew G. Knepley     if (maxDegree <= 1) {
52199566063dSJacob Faibussowitsch       if (!affineQuad) PetscCall(DMFieldCreateDefaultQuadrature(coordField, chunkIS, &affineQuad));
52209566063dSJacob Faibussowitsch       if (affineQuad) PetscCall(DMSNESGetFEGeom(coordField, chunkIS, affineQuad, PETSC_TRUE, &affineGeom));
52213e9753d6SMatthew G. Knepley     } else {
52223e9753d6SMatthew G. Knepley       for (f = 0; f < Nf; ++f) {
52239566063dSJacob Faibussowitsch         if (quads[f]) PetscCall(DMSNESGetFEGeom(coordField, chunkIS, quads[f], PETSC_TRUE, &geoms[f]));
52243e9753d6SMatthew G. Knepley       }
52253e9753d6SMatthew G. Knepley     }
52263e9753d6SMatthew G. Knepley     /* Loop over fields */
52273e9753d6SMatthew G. Knepley     for (f = 0; f < Nf; ++f) {
52283e9753d6SMatthew G. Knepley       PetscFE         fe;
52293e9753d6SMatthew G. Knepley       PetscFEGeom    *geom      = affineGeom ? affineGeom : geoms[f];
5230148442b3SMatthew G. Knepley       PetscFEGeom    *chunkGeom = NULL, *remGeom = NULL;
52313e9753d6SMatthew G. Knepley       PetscQuadrature quad = affineQuad ? affineQuad : quads[f];
52323e9753d6SMatthew G. Knepley       PetscInt        numChunks, numBatches, batchSize, numBlocks, blockSize, Ne, Nr, offset, Nq, Nb;
52335fedec97SMatthew G. Knepley       PetscBool       isCohesiveField;
52343e9753d6SMatthew G. Knepley 
52359566063dSJacob Faibussowitsch       PetscCall(PetscDSGetDiscretization(ds, f, (PetscObject *)&fe));
52363e9753d6SMatthew G. Knepley       if (!fe) continue;
52379566063dSJacob Faibussowitsch       PetscCall(PetscFEGetTileSizes(fe, NULL, &numBlocks, NULL, &numBatches));
52389566063dSJacob Faibussowitsch       PetscCall(PetscQuadratureGetData(quad, NULL, NULL, &Nq, NULL, NULL));
52399566063dSJacob Faibussowitsch       PetscCall(PetscFEGetDimension(fe, &Nb));
52403e9753d6SMatthew G. Knepley       blockSize = Nb;
52413e9753d6SMatthew G. Knepley       batchSize = numBlocks * blockSize;
52429566063dSJacob Faibussowitsch       PetscCall(PetscFESetTileSizes(fe, blockSize, numBlocks, batchSize, numBatches));
52433e9753d6SMatthew G. Knepley       numChunks = numCells / (numBatches * batchSize);
52443e9753d6SMatthew G. Knepley       Ne        = numChunks * numBatches * batchSize;
52453e9753d6SMatthew G. Knepley       Nr        = numCells % (numBatches * batchSize);
52463e9753d6SMatthew G. Knepley       offset    = numCells - Nr;
524707218a29SMatthew G. Knepley       PetscCall(PetscFEGeomGetChunk(geom, 0, offset * 2, &chunkGeom));
524807218a29SMatthew G. Knepley       PetscCall(PetscFEGeomGetChunk(geom, offset * 2, numCells * 2, &remGeom));
52499566063dSJacob Faibussowitsch       PetscCall(PetscDSGetCohesive(ds, f, &isCohesiveField));
52505fedec97SMatthew G. Knepley       chunkGeom->isCohesive = remGeom->isCohesive = PETSC_TRUE;
52516528b96dSMatthew G. Knepley       key[0].field                                = f;
52526528b96dSMatthew G. Knepley       key[1].field                                = f;
52535fedec97SMatthew G. Knepley       key[2].field                                = f;
525407218a29SMatthew G. Knepley       PetscCall(PetscFEIntegrateHybridResidual(ds, dsIn, key[0], 0, Ne, chunkGeom, u, u_t, dsAux[0], a[0], t, elemVecNeg));
525507218a29SMatthew G. Knepley       PetscCall(PetscFEIntegrateHybridResidual(ds, dsIn, key[0], 0, Nr, remGeom, &u[offset * totDimIn], u_t ? &u_t[offset * totDimIn] : NULL, dsAux[0], &a[0][offset * totDimAux[0]], t, &elemVecNeg[offset * totDim]));
525607218a29SMatthew G. Knepley       PetscCall(PetscFEIntegrateHybridResidual(ds, dsIn, key[1], 1, Ne, chunkGeom, u, u_t, dsAux[1], a[1], t, elemVecPos));
525707218a29SMatthew G. Knepley       PetscCall(PetscFEIntegrateHybridResidual(ds, dsIn, key[1], 1, Nr, remGeom, &u[offset * totDimIn], u_t ? &u_t[offset * totDimIn] : NULL, dsAux[1], &a[1][offset * totDimAux[1]], t, &elemVecPos[offset * totDim]));
525807218a29SMatthew G. Knepley       PetscCall(PetscFEIntegrateHybridResidual(ds, dsIn, key[2], 2, Ne, chunkGeom, u, u_t, dsAux[2], a[2], t, elemVecCoh));
525907218a29SMatthew G. Knepley       PetscCall(PetscFEIntegrateHybridResidual(ds, dsIn, key[2], 2, Nr, remGeom, &u[offset * totDimIn], u_t ? &u_t[offset * totDimIn] : NULL, dsAux[2], &a[2][offset * totDimAux[2]], t, &elemVecCoh[offset * totDim]));
52609566063dSJacob Faibussowitsch       PetscCall(PetscFEGeomRestoreChunk(geom, offset, numCells, &remGeom));
52619566063dSJacob Faibussowitsch       PetscCall(PetscFEGeomRestoreChunk(geom, 0, offset, &chunkGeom));
52623e9753d6SMatthew G. Knepley     }
52633e9753d6SMatthew G. Knepley     /* Add elemVec to locX */
52643e9753d6SMatthew G. Knepley     for (c = cS; c < cE; ++c) {
52653e9753d6SMatthew G. Knepley       const PetscInt cell = cells ? cells[c] : c;
52663e9753d6SMatthew G. Knepley       const PetscInt cind = c - cStart;
526707218a29SMatthew G. Knepley       PetscInt       i;
52683e9753d6SMatthew G. Knepley 
526907218a29SMatthew G. Knepley       /* Scale element values */
527007218a29SMatthew G. Knepley       if (locS[0]) {
5271*3e2b0218SMatthew G. Knepley         PetscInt  Nb, off = cind * totDim, soff = cind * totDimScale[0];
527207218a29SMatthew G. Knepley         PetscBool cohesive;
527307218a29SMatthew G. Knepley 
527407218a29SMatthew G. Knepley         for (f = 0; f < Nf; ++f) {
527507218a29SMatthew G. Knepley           PetscCall(PetscDSGetFieldSize(ds, f, &Nb));
527607218a29SMatthew G. Knepley           PetscCall(PetscDSGetCohesive(ds, f, &cohesive));
527707218a29SMatthew G. Knepley           if (f == key[2].field) {
527807218a29SMatthew G. Knepley             PetscCheck(cohesive, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Scaling should not happen for face fields");
527907218a29SMatthew G. Knepley             // No cohesive scaling field is currently input
528007218a29SMatthew G. Knepley             for (i = 0; i < Nb; ++i) elemVecCoh[off + i] += s[0][soff + i] * elemVecNeg[off + i] + s[1][soff + i] * elemVecPos[off + i];
528107218a29SMatthew G. Knepley             off += Nb;
528207218a29SMatthew G. Knepley           } else {
528307218a29SMatthew G. Knepley             const PetscInt N = cohesive ? Nb : Nb * 2;
528407218a29SMatthew G. Knepley 
528507218a29SMatthew G. Knepley             for (i = 0; i < N; ++i) elemVecCoh[off + i] += elemVecNeg[off + i] + elemVecPos[off + i];
528607218a29SMatthew G. Knepley             off += N;
528707218a29SMatthew G. Knepley           }
528807218a29SMatthew G. Knepley         }
528907218a29SMatthew G. Knepley       } else {
529007218a29SMatthew G. Knepley         for (i = cind * totDim; i < (cind + 1) * totDim; ++i) elemVecCoh[i] += elemVecNeg[i] + elemVecPos[i];
529107218a29SMatthew G. Knepley       }
529207218a29SMatthew G. Knepley       if (mesh->printFEM > 1) PetscCall(DMPrintCellVector(cell, name, totDim, &elemVecCoh[cind * totDim]));
52933e9753d6SMatthew G. Knepley       if (ghostLabel) {
52943e9753d6SMatthew G. Knepley         PetscInt ghostVal;
52953e9753d6SMatthew G. Knepley 
52969566063dSJacob Faibussowitsch         PetscCall(DMLabelGetValue(ghostLabel, cell, &ghostVal));
52973e9753d6SMatthew G. Knepley         if (ghostVal > 0) continue;
52983e9753d6SMatthew G. Knepley       }
529907218a29SMatthew G. Knepley       PetscCall(DMPlexVecSetClosure(dm, section, locF, cell, &elemVecCoh[cind * totDim], ADD_ALL_VALUES));
53003e9753d6SMatthew G. Knepley     }
53013e9753d6SMatthew G. Knepley   }
53029566063dSJacob Faibussowitsch   PetscCall(DMPlexRestoreCellFields(dm, cellIS, locX, locX_t, locA[2], &u, &u_t, &a[2]));
530307218a29SMatthew G. Knepley   PetscCall(DMPlexRestoreHybridFields(dm, dmAux, dsAux, cellIS, locA, PETSC_TRUE, a));
5304*3e2b0218SMatthew G. Knepley   PetscCall(DMPlexRestoreHybridFields(dm, dmScale, dsScale, cellIS, locS, PETSC_TRUE, s));
530507218a29SMatthew G. Knepley   PetscCall(DMRestoreWorkArray(dm, numCells * totDim, MPIU_SCALAR, &elemVecNeg));
530607218a29SMatthew G. Knepley   PetscCall(DMRestoreWorkArray(dm, numCells * totDim, MPIU_SCALAR, &elemVecPos));
530707218a29SMatthew G. Knepley   PetscCall(DMRestoreWorkArray(dm, numCells * totDim, MPIU_SCALAR, &elemVecCoh));
53089566063dSJacob Faibussowitsch   PetscCall(PetscFree(faces));
53099566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&chunkIS));
53109566063dSJacob Faibussowitsch   PetscCall(ISRestorePointRange(cellIS, &cStart, &cEnd, &cells));
53113e9753d6SMatthew G. Knepley   if (maxDegree <= 1) {
53129566063dSJacob Faibussowitsch     PetscCall(DMSNESRestoreFEGeom(coordField, cellIS, affineQuad, PETSC_FALSE, &affineGeom));
53139566063dSJacob Faibussowitsch     PetscCall(PetscQuadratureDestroy(&affineQuad));
53143e9753d6SMatthew G. Knepley   } else {
53153e9753d6SMatthew G. Knepley     for (f = 0; f < Nf; ++f) {
53169566063dSJacob Faibussowitsch       if (geoms) PetscCall(DMSNESRestoreFEGeom(coordField, cellIS, quads[f], PETSC_FALSE, &geoms[f]));
53179566063dSJacob Faibussowitsch       if (quads) PetscCall(PetscQuadratureDestroy(&quads[f]));
53183e9753d6SMatthew G. Knepley     }
53199566063dSJacob Faibussowitsch     PetscCall(PetscFree2(quads, geoms));
53203e9753d6SMatthew G. Knepley   }
532185cc2951SMatthew G. Knepley   if (mesh->printFEM) {
532285cc2951SMatthew G. Knepley     Vec          locFbc;
532385cc2951SMatthew G. Knepley     PetscInt     pStart, pEnd, p, maxDof;
532485cc2951SMatthew G. Knepley     PetscScalar *zeroes;
532585cc2951SMatthew G. Knepley 
532685cc2951SMatthew G. Knepley     PetscCall(VecDuplicate(locF, &locFbc));
532785cc2951SMatthew G. Knepley     PetscCall(VecCopy(locF, locFbc));
532885cc2951SMatthew G. Knepley     PetscCall(PetscSectionGetChart(section, &pStart, &pEnd));
532985cc2951SMatthew G. Knepley     PetscCall(PetscSectionGetMaxDof(section, &maxDof));
533085cc2951SMatthew G. Knepley     PetscCall(PetscCalloc1(maxDof, &zeroes));
533185cc2951SMatthew G. Knepley     for (p = pStart; p < pEnd; p++) PetscCall(VecSetValuesSection(locFbc, section, p, zeroes, INSERT_BC_VALUES));
533285cc2951SMatthew G. Knepley     PetscCall(PetscFree(zeroes));
533385cc2951SMatthew G. Knepley     PetscCall(DMPrintLocalVec(dm, name, mesh->printTol, locFbc));
533485cc2951SMatthew G. Knepley     PetscCall(VecDestroy(&locFbc));
533585cc2951SMatthew G. Knepley   }
53369566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(DMPLEX_ResidualFEM, dm, 0, 0, 0));
53373ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
53383e9753d6SMatthew G. Knepley }
53393e9753d6SMatthew G. Knepley 
5340d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeBdJacobian_Single_Internal(DM dm, PetscReal t, PetscWeakForm wf, DMLabel label, PetscInt numValues, const PetscInt values[], PetscInt fieldI, Vec locX, Vec locX_t, PetscReal X_tShift, Mat Jac, Mat JacP, DMField coordField, IS facetIS)
5341d71ae5a4SJacob Faibussowitsch {
53423e9753d6SMatthew G. Knepley   DM_Plex        *mesh = (DM_Plex *)dm->data;
53433e9753d6SMatthew G. Knepley   DM              plex = NULL, plexA = NULL, tdm;
53443e9753d6SMatthew G. Knepley   DMEnclosureType encAux;
53453e9753d6SMatthew G. Knepley   PetscDS         prob, probAux       = NULL;
53463e9753d6SMatthew G. Knepley   PetscSection    section, sectionAux = NULL;
5347e432b41dSStefano Zampini   PetscSection    globalSection;
53483e9753d6SMatthew G. Knepley   Vec             locA = NULL, tv;
53493e9753d6SMatthew G. Knepley   PetscScalar    *u = NULL, *u_t = NULL, *a = NULL, *elemMat = NULL;
53503e9753d6SMatthew G. Knepley   PetscInt        v;
53513e9753d6SMatthew G. Knepley   PetscInt        Nf, totDim, totDimAux = 0;
5352e432b41dSStefano Zampini   PetscBool       transform;
53533e9753d6SMatthew G. Knepley 
53543e9753d6SMatthew G. Knepley   PetscFunctionBegin;
53559566063dSJacob Faibussowitsch   PetscCall(DMConvert(dm, DMPLEX, &plex));
53569566063dSJacob Faibussowitsch   PetscCall(DMHasBasisTransform(dm, &transform));
53579566063dSJacob Faibussowitsch   PetscCall(DMGetBasisTransformDM_Internal(dm, &tdm));
53589566063dSJacob Faibussowitsch   PetscCall(DMGetBasisTransformVec_Internal(dm, &tv));
53599566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dm, &section));
53609566063dSJacob Faibussowitsch   PetscCall(DMGetDS(dm, &prob));
53619566063dSJacob Faibussowitsch   PetscCall(PetscDSGetNumFields(prob, &Nf));
53629566063dSJacob Faibussowitsch   PetscCall(PetscDSGetTotalDimension(prob, &totDim));
53639566063dSJacob Faibussowitsch   PetscCall(DMGetAuxiliaryVec(dm, label, values[0], 0, &locA));
53643e9753d6SMatthew G. Knepley   if (locA) {
53653e9753d6SMatthew G. Knepley     DM dmAux;
53663e9753d6SMatthew G. Knepley 
53679566063dSJacob Faibussowitsch     PetscCall(VecGetDM(locA, &dmAux));
53689566063dSJacob Faibussowitsch     PetscCall(DMGetEnclosureRelation(dmAux, dm, &encAux));
53699566063dSJacob Faibussowitsch     PetscCall(DMConvert(dmAux, DMPLEX, &plexA));
53709566063dSJacob Faibussowitsch     PetscCall(DMGetDS(plexA, &probAux));
53719566063dSJacob Faibussowitsch     PetscCall(PetscDSGetTotalDimension(probAux, &totDimAux));
53729566063dSJacob Faibussowitsch     PetscCall(DMGetLocalSection(plexA, &sectionAux));
53733e9753d6SMatthew G. Knepley   }
53743e9753d6SMatthew G. Knepley 
53759566063dSJacob Faibussowitsch   PetscCall(DMGetGlobalSection(dm, &globalSection));
53763e9753d6SMatthew G. Knepley   for (v = 0; v < numValues; ++v) {
53773e9753d6SMatthew G. Knepley     PetscFEGeom    *fgeom;
53783e9753d6SMatthew G. Knepley     PetscInt        maxDegree;
53793e9753d6SMatthew G. Knepley     PetscQuadrature qGeom = NULL;
53803e9753d6SMatthew G. Knepley     IS              pointIS;
53813e9753d6SMatthew G. Knepley     const PetscInt *points;
538206ad1575SMatthew G. Knepley     PetscFormKey    key;
53833e9753d6SMatthew G. Knepley     PetscInt        numFaces, face, Nq;
53843e9753d6SMatthew G. Knepley 
538545480ffeSMatthew G. Knepley     key.label = label;
538645480ffeSMatthew G. Knepley     key.value = values[v];
538706ad1575SMatthew G. Knepley     key.part  = 0;
53889566063dSJacob Faibussowitsch     PetscCall(DMLabelGetStratumIS(label, values[v], &pointIS));
53893e9753d6SMatthew G. Knepley     if (!pointIS) continue; /* No points with that id on this process */
53903e9753d6SMatthew G. Knepley     {
53913e9753d6SMatthew G. Knepley       IS isectIS;
53923e9753d6SMatthew G. Knepley 
53933e9753d6SMatthew G. Knepley       /* TODO: Special cases of ISIntersect where it is quick to check a prior if one is a superset of the other */
53949566063dSJacob Faibussowitsch       PetscCall(ISIntersect_Caching_Internal(facetIS, pointIS, &isectIS));
53959566063dSJacob Faibussowitsch       PetscCall(ISDestroy(&pointIS));
53963e9753d6SMatthew G. Knepley       pointIS = isectIS;
53973e9753d6SMatthew G. Knepley     }
53989566063dSJacob Faibussowitsch     PetscCall(ISGetLocalSize(pointIS, &numFaces));
53999566063dSJacob Faibussowitsch     PetscCall(ISGetIndices(pointIS, &points));
54009566063dSJacob Faibussowitsch     PetscCall(PetscMalloc4(numFaces * totDim, &u, locX_t ? numFaces * totDim : 0, &u_t, numFaces * totDim * totDim, &elemMat, locA ? numFaces * totDimAux : 0, &a));
54019566063dSJacob Faibussowitsch     PetscCall(DMFieldGetDegree(coordField, pointIS, NULL, &maxDegree));
540248a46eb9SPierre Jolivet     if (maxDegree <= 1) PetscCall(DMFieldCreateDefaultQuadrature(coordField, pointIS, &qGeom));
54033e9753d6SMatthew G. Knepley     if (!qGeom) {
54043e9753d6SMatthew G. Knepley       PetscFE fe;
54053e9753d6SMatthew G. Knepley 
54069566063dSJacob Faibussowitsch       PetscCall(PetscDSGetDiscretization(prob, fieldI, (PetscObject *)&fe));
54079566063dSJacob Faibussowitsch       PetscCall(PetscFEGetFaceQuadrature(fe, &qGeom));
54089566063dSJacob Faibussowitsch       PetscCall(PetscObjectReference((PetscObject)qGeom));
54093e9753d6SMatthew G. Knepley     }
54109566063dSJacob Faibussowitsch     PetscCall(PetscQuadratureGetData(qGeom, NULL, NULL, &Nq, NULL, NULL));
54119566063dSJacob Faibussowitsch     PetscCall(DMSNESGetFEGeom(coordField, pointIS, qGeom, PETSC_TRUE, &fgeom));
54123e9753d6SMatthew G. Knepley     for (face = 0; face < numFaces; ++face) {
5413f15274beSMatthew Knepley       const PetscInt point = points[face], *support;
54143e9753d6SMatthew G. Knepley       PetscScalar   *x     = NULL;
5415f15274beSMatthew Knepley       PetscInt       i;
54163e9753d6SMatthew G. Knepley 
54179566063dSJacob Faibussowitsch       PetscCall(DMPlexGetSupport(dm, point, &support));
54189566063dSJacob Faibussowitsch       PetscCall(DMPlexVecGetClosure(plex, section, locX, support[0], NULL, &x));
54193e9753d6SMatthew G. Knepley       for (i = 0; i < totDim; ++i) u[face * totDim + i] = x[i];
54209566063dSJacob Faibussowitsch       PetscCall(DMPlexVecRestoreClosure(plex, section, locX, support[0], NULL, &x));
54213e9753d6SMatthew G. Knepley       if (locX_t) {
54229566063dSJacob Faibussowitsch         PetscCall(DMPlexVecGetClosure(plex, section, locX_t, support[0], NULL, &x));
54233e9753d6SMatthew G. Knepley         for (i = 0; i < totDim; ++i) u_t[face * totDim + i] = x[i];
54249566063dSJacob Faibussowitsch         PetscCall(DMPlexVecRestoreClosure(plex, section, locX_t, support[0], NULL, &x));
54253e9753d6SMatthew G. Knepley       }
54263e9753d6SMatthew G. Knepley       if (locA) {
54273e9753d6SMatthew G. Knepley         PetscInt subp;
54289566063dSJacob Faibussowitsch         PetscCall(DMGetEnclosurePoint(plexA, dm, encAux, support[0], &subp));
54299566063dSJacob Faibussowitsch         PetscCall(DMPlexVecGetClosure(plexA, sectionAux, locA, subp, NULL, &x));
54303e9753d6SMatthew G. Knepley         for (i = 0; i < totDimAux; ++i) a[face * totDimAux + i] = x[i];
54319566063dSJacob Faibussowitsch         PetscCall(DMPlexVecRestoreClosure(plexA, sectionAux, locA, subp, NULL, &x));
54323e9753d6SMatthew G. Knepley       }
54333e9753d6SMatthew G. Knepley     }
54349566063dSJacob Faibussowitsch     PetscCall(PetscArrayzero(elemMat, numFaces * totDim * totDim));
54353e9753d6SMatthew G. Knepley     {
54363e9753d6SMatthew G. Knepley       PetscFE  fe;
54373e9753d6SMatthew G. Knepley       PetscInt Nb;
54383e9753d6SMatthew G. Knepley       /* Conforming batches */
54393e9753d6SMatthew G. Knepley       PetscInt numChunks, numBatches, numBlocks, Ne, blockSize, batchSize;
54403e9753d6SMatthew G. Knepley       /* Remainder */
54413e9753d6SMatthew G. Knepley       PetscFEGeom *chunkGeom = NULL;
54423e9753d6SMatthew G. Knepley       PetscInt     fieldJ, Nr, offset;
54433e9753d6SMatthew G. Knepley 
54449566063dSJacob Faibussowitsch       PetscCall(PetscDSGetDiscretization(prob, fieldI, (PetscObject *)&fe));
54459566063dSJacob Faibussowitsch       PetscCall(PetscFEGetDimension(fe, &Nb));
54469566063dSJacob Faibussowitsch       PetscCall(PetscFEGetTileSizes(fe, NULL, &numBlocks, NULL, &numBatches));
54473e9753d6SMatthew G. Knepley       blockSize = Nb;
54483e9753d6SMatthew G. Knepley       batchSize = numBlocks * blockSize;
54499566063dSJacob Faibussowitsch       PetscCall(PetscFESetTileSizes(fe, blockSize, numBlocks, batchSize, numBatches));
54503e9753d6SMatthew G. Knepley       numChunks = numFaces / (numBatches * batchSize);
54513e9753d6SMatthew G. Knepley       Ne        = numChunks * numBatches * batchSize;
54523e9753d6SMatthew G. Knepley       Nr        = numFaces % (numBatches * batchSize);
54533e9753d6SMatthew G. Knepley       offset    = numFaces - Nr;
54549566063dSJacob Faibussowitsch       PetscCall(PetscFEGeomGetChunk(fgeom, 0, offset, &chunkGeom));
54553e9753d6SMatthew G. Knepley       for (fieldJ = 0; fieldJ < Nf; ++fieldJ) {
545645480ffeSMatthew G. Knepley         key.field = fieldI * Nf + fieldJ;
54579566063dSJacob Faibussowitsch         PetscCall(PetscFEIntegrateBdJacobian(prob, wf, key, Ne, chunkGeom, u, u_t, probAux, a, t, X_tShift, elemMat));
54583e9753d6SMatthew G. Knepley       }
54599566063dSJacob Faibussowitsch       PetscCall(PetscFEGeomGetChunk(fgeom, offset, numFaces, &chunkGeom));
54603e9753d6SMatthew G. Knepley       for (fieldJ = 0; fieldJ < Nf; ++fieldJ) {
546145480ffeSMatthew G. Knepley         key.field = fieldI * Nf + fieldJ;
54629566063dSJacob Faibussowitsch         PetscCall(PetscFEIntegrateBdJacobian(prob, wf, key, Nr, chunkGeom, &u[offset * totDim], u_t ? &u_t[offset * totDim] : NULL, probAux, a ? &a[offset * totDimAux] : NULL, t, X_tShift, &elemMat[offset * totDim * totDim]));
54633e9753d6SMatthew G. Knepley       }
54649566063dSJacob Faibussowitsch       PetscCall(PetscFEGeomRestoreChunk(fgeom, offset, numFaces, &chunkGeom));
54653e9753d6SMatthew G. Knepley     }
54663e9753d6SMatthew G. Knepley     for (face = 0; face < numFaces; ++face) {
54673e9753d6SMatthew G. Knepley       const PetscInt point = points[face], *support;
54683e9753d6SMatthew G. Knepley 
54693e9753d6SMatthew G. Knepley       /* Transform to global basis before insertion in Jacobian */
54709566063dSJacob Faibussowitsch       PetscCall(DMPlexGetSupport(plex, point, &support));
54719566063dSJacob Faibussowitsch       if (transform) PetscCall(DMPlexBasisTransformPointTensor_Internal(dm, tdm, tv, support[0], PETSC_TRUE, totDim, &elemMat[face * totDim * totDim]));
54729566063dSJacob Faibussowitsch       if (mesh->printFEM > 1) PetscCall(DMPrintCellMatrix(point, "BdJacobian", totDim, totDim, &elemMat[face * totDim * totDim]));
54739566063dSJacob Faibussowitsch       PetscCall(DMPlexMatSetClosure(plex, section, globalSection, JacP, support[0], &elemMat[face * totDim * totDim], ADD_VALUES));
54743e9753d6SMatthew G. Knepley     }
54759566063dSJacob Faibussowitsch     PetscCall(DMSNESRestoreFEGeom(coordField, pointIS, qGeom, PETSC_TRUE, &fgeom));
54769566063dSJacob Faibussowitsch     PetscCall(PetscQuadratureDestroy(&qGeom));
54779566063dSJacob Faibussowitsch     PetscCall(ISRestoreIndices(pointIS, &points));
54789566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&pointIS));
54799566063dSJacob Faibussowitsch     PetscCall(PetscFree4(u, u_t, elemMat, a));
54803e9753d6SMatthew G. Knepley   }
54819566063dSJacob Faibussowitsch   if (plex) PetscCall(DMDestroy(&plex));
54829566063dSJacob Faibussowitsch   if (plexA) PetscCall(DMDestroy(&plexA));
54833ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
54843e9753d6SMatthew G. Knepley }
54853e9753d6SMatthew G. Knepley 
5486d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeBdJacobianSingle(DM dm, PetscReal t, PetscWeakForm wf, DMLabel label, PetscInt numValues, const PetscInt values[], PetscInt field, Vec locX, Vec locX_t, PetscReal X_tShift, Mat Jac, Mat JacP)
5487d71ae5a4SJacob Faibussowitsch {
54883e9753d6SMatthew G. Knepley   DMField  coordField;
54893e9753d6SMatthew G. Knepley   DMLabel  depthLabel;
54903e9753d6SMatthew G. Knepley   IS       facetIS;
54913e9753d6SMatthew G. Knepley   PetscInt dim;
54923e9753d6SMatthew G. Knepley 
54933e9753d6SMatthew G. Knepley   PetscFunctionBegin;
54949566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dm, &dim));
54959566063dSJacob Faibussowitsch   PetscCall(DMPlexGetDepthLabel(dm, &depthLabel));
54969566063dSJacob Faibussowitsch   PetscCall(DMLabelGetStratumIS(depthLabel, dim - 1, &facetIS));
54979566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateField(dm, &coordField));
54989566063dSJacob Faibussowitsch   PetscCall(DMPlexComputeBdJacobian_Single_Internal(dm, t, wf, label, numValues, values, field, locX, locX_t, X_tShift, Jac, JacP, coordField, facetIS));
54999566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&facetIS));
55003ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
55013e9753d6SMatthew G. Knepley }
55023e9753d6SMatthew G. Knepley 
5503d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeBdJacobian_Internal(DM dm, Vec locX, Vec locX_t, PetscReal t, PetscReal X_tShift, Mat Jac, Mat JacP, void *user)
5504d71ae5a4SJacob Faibussowitsch {
55053e9753d6SMatthew G. Knepley   PetscDS  prob;
55063e9753d6SMatthew G. Knepley   PetscInt dim, numBd, bd;
55073e9753d6SMatthew G. Knepley   DMLabel  depthLabel;
55083e9753d6SMatthew G. Knepley   DMField  coordField = NULL;
55093e9753d6SMatthew G. Knepley   IS       facetIS;
55103e9753d6SMatthew G. Knepley 
55113e9753d6SMatthew G. Knepley   PetscFunctionBegin;
55129566063dSJacob Faibussowitsch   PetscCall(DMGetDS(dm, &prob));
55139566063dSJacob Faibussowitsch   PetscCall(DMPlexGetDepthLabel(dm, &depthLabel));
55149566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dm, &dim));
55159566063dSJacob Faibussowitsch   PetscCall(DMLabelGetStratumIS(depthLabel, dim - 1, &facetIS));
55169566063dSJacob Faibussowitsch   PetscCall(PetscDSGetNumBoundary(prob, &numBd));
55179566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateField(dm, &coordField));
55183e9753d6SMatthew G. Knepley   for (bd = 0; bd < numBd; ++bd) {
551945480ffeSMatthew G. Knepley     PetscWeakForm           wf;
55203e9753d6SMatthew G. Knepley     DMBoundaryConditionType type;
55213e9753d6SMatthew G. Knepley     DMLabel                 label;
55223e9753d6SMatthew G. Knepley     const PetscInt         *values;
55233e9753d6SMatthew G. Knepley     PetscInt                fieldI, numValues;
55243e9753d6SMatthew G. Knepley     PetscObject             obj;
55253e9753d6SMatthew G. Knepley     PetscClassId            id;
55263e9753d6SMatthew G. Knepley 
55279566063dSJacob Faibussowitsch     PetscCall(PetscDSGetBoundary(prob, bd, &wf, &type, NULL, &label, &numValues, &values, &fieldI, NULL, NULL, NULL, NULL, NULL));
55283d3e5d66SMatthew G. Knepley     if (type & DM_BC_ESSENTIAL) continue;
55299566063dSJacob Faibussowitsch     PetscCall(PetscDSGetDiscretization(prob, fieldI, &obj));
55309566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetClassId(obj, &id));
55313d3e5d66SMatthew G. Knepley     if (id != PETSCFE_CLASSID) continue;
55329566063dSJacob Faibussowitsch     PetscCall(DMPlexComputeBdJacobian_Single_Internal(dm, t, wf, label, numValues, values, fieldI, locX, locX_t, X_tShift, Jac, JacP, coordField, facetIS));
55333e9753d6SMatthew G. Knepley   }
55349566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&facetIS));
55353ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
55363e9753d6SMatthew G. Knepley }
55373e9753d6SMatthew G. Knepley 
5538d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeJacobian_Internal(DM dm, PetscFormKey key, IS cellIS, PetscReal t, PetscReal X_tShift, Vec X, Vec X_t, Mat Jac, Mat JacP, void *user)
5539d71ae5a4SJacob Faibussowitsch {
55403e9753d6SMatthew G. Knepley   DM_Plex        *mesh  = (DM_Plex *)dm->data;
55413e9753d6SMatthew G. Knepley   const char     *name  = "Jacobian";
55429a2a23afSMatthew G. Knepley   DM              dmAux = NULL, plex, tdm;
55433e9753d6SMatthew G. Knepley   DMEnclosureType encAux;
55443e9753d6SMatthew G. Knepley   Vec             A, tv;
55453e9753d6SMatthew G. Knepley   DMField         coordField;
55463e9753d6SMatthew G. Knepley   PetscDS         prob, probAux = NULL;
5547e432b41dSStefano Zampini   PetscSection    section, globalSection, sectionAux;
55483e9753d6SMatthew G. Knepley   PetscScalar    *elemMat, *elemMatP, *elemMatD, *u, *u_t, *a = NULL;
55493e9753d6SMatthew G. Knepley   const PetscInt *cells;
55503e9753d6SMatthew G. Knepley   PetscInt        Nf, fieldI, fieldJ;
555128351e22SJed Brown   PetscInt        totDim, totDimAux = 0, cStart, cEnd, numCells, c;
5552e04ae0b4SMatthew G. Knepley   PetscBool       hasJac = PETSC_FALSE, hasPrec = PETSC_FALSE, hasDyn, hasFV = PETSC_FALSE, transform;
55533e9753d6SMatthew G. Knepley 
55543e9753d6SMatthew G. Knepley   PetscFunctionBegin;
5555af18b51aSmarkadams4   PetscCall(PetscLogEventBegin(DMPLEX_JacobianFEM, dm, 0, 0, 0));
5556e04ae0b4SMatthew G. Knepley   if (!cellIS) goto end;
55579566063dSJacob Faibussowitsch   PetscCall(ISGetPointRange(cellIS, &cStart, &cEnd, &cells));
5558437e83fbSMatthew G. Knepley   PetscCall(ISGetLocalSize(cellIS, &numCells));
5559437e83fbSMatthew G. Knepley   if (cStart >= cEnd) goto end;
55609566063dSJacob Faibussowitsch   PetscCall(DMHasBasisTransform(dm, &transform));
55619566063dSJacob Faibussowitsch   PetscCall(DMGetBasisTransformDM_Internal(dm, &tdm));
55629566063dSJacob Faibussowitsch   PetscCall(DMGetBasisTransformVec_Internal(dm, &tv));
55639566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dm, &section));
55649566063dSJacob Faibussowitsch   PetscCall(DMGetGlobalSection(dm, &globalSection));
556507218a29SMatthew G. Knepley   PetscCall(DMGetCellDS(dm, cells ? cells[cStart] : cStart, &prob, NULL));
55669566063dSJacob Faibussowitsch   PetscCall(PetscDSGetNumFields(prob, &Nf));
55679566063dSJacob Faibussowitsch   PetscCall(PetscDSGetTotalDimension(prob, &totDim));
55689566063dSJacob Faibussowitsch   PetscCall(PetscDSHasJacobian(prob, &hasJac));
55699566063dSJacob Faibussowitsch   PetscCall(PetscDSHasJacobianPreconditioner(prob, &hasPrec));
55703e9753d6SMatthew G. Knepley   /* user passed in the same matrix, avoid double contributions and
55713e9753d6SMatthew G. Knepley      only assemble the Jacobian */
55723e9753d6SMatthew G. Knepley   if (hasJac && Jac == JacP) hasPrec = PETSC_FALSE;
55739566063dSJacob Faibussowitsch   PetscCall(PetscDSHasDynamicJacobian(prob, &hasDyn));
55743e9753d6SMatthew G. Knepley   hasDyn = hasDyn && (X_tShift != 0.0) ? PETSC_TRUE : PETSC_FALSE;
55759566063dSJacob Faibussowitsch   PetscCall(DMGetAuxiliaryVec(dm, key.label, key.value, key.part, &A));
55769a2a23afSMatthew G. Knepley   if (A) {
55779566063dSJacob Faibussowitsch     PetscCall(VecGetDM(A, &dmAux));
55789566063dSJacob Faibussowitsch     PetscCall(DMGetEnclosureRelation(dmAux, dm, &encAux));
55799566063dSJacob Faibussowitsch     PetscCall(DMConvert(dmAux, DMPLEX, &plex));
55809566063dSJacob Faibussowitsch     PetscCall(DMGetLocalSection(plex, &sectionAux));
55819566063dSJacob Faibussowitsch     PetscCall(DMGetDS(dmAux, &probAux));
55829566063dSJacob Faibussowitsch     PetscCall(PetscDSGetTotalDimension(probAux, &totDimAux));
55833e9753d6SMatthew G. Knepley   }
55849566063dSJacob Faibussowitsch   PetscCall(PetscMalloc5(numCells * totDim, &u, X_t ? numCells * totDim : 0, &u_t, hasJac ? numCells * totDim * totDim : 0, &elemMat, hasPrec ? numCells * totDim * totDim : 0, &elemMatP, hasDyn ? numCells * totDim * totDim : 0, &elemMatD));
55859566063dSJacob Faibussowitsch   if (dmAux) PetscCall(PetscMalloc1(numCells * totDimAux, &a));
55869566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateField(dm, &coordField));
55873e9753d6SMatthew G. Knepley   for (c = cStart; c < cEnd; ++c) {
55883e9753d6SMatthew G. Knepley     const PetscInt cell = cells ? cells[c] : c;
55893e9753d6SMatthew G. Knepley     const PetscInt cind = c - cStart;
55903e9753d6SMatthew G. Knepley     PetscScalar   *x = NULL, *x_t = NULL;
55913e9753d6SMatthew G. Knepley     PetscInt       i;
55923e9753d6SMatthew G. Knepley 
55939566063dSJacob Faibussowitsch     PetscCall(DMPlexVecGetClosure(dm, section, X, cell, NULL, &x));
55943e9753d6SMatthew G. Knepley     for (i = 0; i < totDim; ++i) u[cind * totDim + i] = x[i];
55959566063dSJacob Faibussowitsch     PetscCall(DMPlexVecRestoreClosure(dm, section, X, cell, NULL, &x));
55963e9753d6SMatthew G. Knepley     if (X_t) {
55979566063dSJacob Faibussowitsch       PetscCall(DMPlexVecGetClosure(dm, section, X_t, cell, NULL, &x_t));
55983e9753d6SMatthew G. Knepley       for (i = 0; i < totDim; ++i) u_t[cind * totDim + i] = x_t[i];
55999566063dSJacob Faibussowitsch       PetscCall(DMPlexVecRestoreClosure(dm, section, X_t, cell, NULL, &x_t));
56003e9753d6SMatthew G. Knepley     }
56013e9753d6SMatthew G. Knepley     if (dmAux) {
56023e9753d6SMatthew G. Knepley       PetscInt subcell;
56039566063dSJacob Faibussowitsch       PetscCall(DMGetEnclosurePoint(dmAux, dm, encAux, cell, &subcell));
56049566063dSJacob Faibussowitsch       PetscCall(DMPlexVecGetClosure(plex, sectionAux, A, subcell, NULL, &x));
56053e9753d6SMatthew G. Knepley       for (i = 0; i < totDimAux; ++i) a[cind * totDimAux + i] = x[i];
56069566063dSJacob Faibussowitsch       PetscCall(DMPlexVecRestoreClosure(plex, sectionAux, A, subcell, NULL, &x));
56073e9753d6SMatthew G. Knepley     }
56083e9753d6SMatthew G. Knepley   }
56099566063dSJacob Faibussowitsch   if (hasJac) PetscCall(PetscArrayzero(elemMat, numCells * totDim * totDim));
56109566063dSJacob Faibussowitsch   if (hasPrec) PetscCall(PetscArrayzero(elemMatP, numCells * totDim * totDim));
56119566063dSJacob Faibussowitsch   if (hasDyn) PetscCall(PetscArrayzero(elemMatD, numCells * totDim * totDim));
56123e9753d6SMatthew G. Knepley   for (fieldI = 0; fieldI < Nf; ++fieldI) {
56133e9753d6SMatthew G. Knepley     PetscClassId    id;
56143e9753d6SMatthew G. Knepley     PetscFE         fe;
56153e9753d6SMatthew G. Knepley     PetscQuadrature qGeom = NULL;
56163e9753d6SMatthew G. Knepley     PetscInt        Nb;
56173e9753d6SMatthew G. Knepley     /* Conforming batches */
56183e9753d6SMatthew G. Knepley     PetscInt numChunks, numBatches, numBlocks, Ne, blockSize, batchSize;
56193e9753d6SMatthew G. Knepley     /* Remainder */
56203e9753d6SMatthew G. Knepley     PetscInt     Nr, offset, Nq;
56213e9753d6SMatthew G. Knepley     PetscInt     maxDegree;
56223e9753d6SMatthew G. Knepley     PetscFEGeom *cgeomFEM, *chunkGeom = NULL, *remGeom = NULL;
56233e9753d6SMatthew G. Knepley 
56249566063dSJacob Faibussowitsch     PetscCall(PetscDSGetDiscretization(prob, fieldI, (PetscObject *)&fe));
56259566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetClassId((PetscObject)fe, &id));
56269371c9d4SSatish Balay     if (id == PETSCFV_CLASSID) {
56279371c9d4SSatish Balay       hasFV = PETSC_TRUE;
56289371c9d4SSatish Balay       continue;
56299371c9d4SSatish Balay     }
56309566063dSJacob Faibussowitsch     PetscCall(PetscFEGetDimension(fe, &Nb));
56319566063dSJacob Faibussowitsch     PetscCall(PetscFEGetTileSizes(fe, NULL, &numBlocks, NULL, &numBatches));
56329566063dSJacob Faibussowitsch     PetscCall(DMFieldGetDegree(coordField, cellIS, NULL, &maxDegree));
563348a46eb9SPierre Jolivet     if (maxDegree <= 1) PetscCall(DMFieldCreateDefaultQuadrature(coordField, cellIS, &qGeom));
56343e9753d6SMatthew G. Knepley     if (!qGeom) {
56359566063dSJacob Faibussowitsch       PetscCall(PetscFEGetQuadrature(fe, &qGeom));
56369566063dSJacob Faibussowitsch       PetscCall(PetscObjectReference((PetscObject)qGeom));
56373e9753d6SMatthew G. Knepley     }
56389566063dSJacob Faibussowitsch     PetscCall(PetscQuadratureGetData(qGeom, NULL, NULL, &Nq, NULL, NULL));
56399566063dSJacob Faibussowitsch     PetscCall(DMSNESGetFEGeom(coordField, cellIS, qGeom, PETSC_FALSE, &cgeomFEM));
56403e9753d6SMatthew G. Knepley     blockSize = Nb;
56413e9753d6SMatthew G. Knepley     batchSize = numBlocks * blockSize;
56429566063dSJacob Faibussowitsch     PetscCall(PetscFESetTileSizes(fe, blockSize, numBlocks, batchSize, numBatches));
56433e9753d6SMatthew G. Knepley     numChunks = numCells / (numBatches * batchSize);
56443e9753d6SMatthew G. Knepley     Ne        = numChunks * numBatches * batchSize;
56453e9753d6SMatthew G. Knepley     Nr        = numCells % (numBatches * batchSize);
56463e9753d6SMatthew G. Knepley     offset    = numCells - Nr;
56479566063dSJacob Faibussowitsch     PetscCall(PetscFEGeomGetChunk(cgeomFEM, 0, offset, &chunkGeom));
56489566063dSJacob Faibussowitsch     PetscCall(PetscFEGeomGetChunk(cgeomFEM, offset, numCells, &remGeom));
56493e9753d6SMatthew G. Knepley     for (fieldJ = 0; fieldJ < Nf; ++fieldJ) {
56506528b96dSMatthew G. Knepley       key.field = fieldI * Nf + fieldJ;
56513e9753d6SMatthew G. Knepley       if (hasJac) {
56529566063dSJacob Faibussowitsch         PetscCall(PetscFEIntegrateJacobian(prob, PETSCFE_JACOBIAN, key, Ne, chunkGeom, u, u_t, probAux, a, t, X_tShift, elemMat));
56539566063dSJacob Faibussowitsch         PetscCall(PetscFEIntegrateJacobian(prob, PETSCFE_JACOBIAN, key, Nr, remGeom, &u[offset * totDim], u_t ? &u_t[offset * totDim] : NULL, probAux, &a[offset * totDimAux], t, X_tShift, &elemMat[offset * totDim * totDim]));
56543e9753d6SMatthew G. Knepley       }
56553e9753d6SMatthew G. Knepley       if (hasPrec) {
56569566063dSJacob Faibussowitsch         PetscCall(PetscFEIntegrateJacobian(prob, PETSCFE_JACOBIAN_PRE, key, Ne, chunkGeom, u, u_t, probAux, a, t, X_tShift, elemMatP));
56579566063dSJacob Faibussowitsch         PetscCall(PetscFEIntegrateJacobian(prob, PETSCFE_JACOBIAN_PRE, key, Nr, remGeom, &u[offset * totDim], u_t ? &u_t[offset * totDim] : NULL, probAux, &a[offset * totDimAux], t, X_tShift, &elemMatP[offset * totDim * totDim]));
56583e9753d6SMatthew G. Knepley       }
56593e9753d6SMatthew G. Knepley       if (hasDyn) {
56609566063dSJacob Faibussowitsch         PetscCall(PetscFEIntegrateJacobian(prob, PETSCFE_JACOBIAN_DYN, key, Ne, chunkGeom, u, u_t, probAux, a, t, X_tShift, elemMatD));
56619566063dSJacob Faibussowitsch         PetscCall(PetscFEIntegrateJacobian(prob, PETSCFE_JACOBIAN_DYN, key, Nr, remGeom, &u[offset * totDim], u_t ? &u_t[offset * totDim] : NULL, probAux, &a[offset * totDimAux], t, X_tShift, &elemMatD[offset * totDim * totDim]));
56623e9753d6SMatthew G. Knepley       }
56633e9753d6SMatthew G. Knepley     }
56649566063dSJacob Faibussowitsch     PetscCall(PetscFEGeomRestoreChunk(cgeomFEM, offset, numCells, &remGeom));
56659566063dSJacob Faibussowitsch     PetscCall(PetscFEGeomRestoreChunk(cgeomFEM, 0, offset, &chunkGeom));
56669566063dSJacob Faibussowitsch     PetscCall(DMSNESRestoreFEGeom(coordField, cellIS, qGeom, PETSC_FALSE, &cgeomFEM));
56679566063dSJacob Faibussowitsch     PetscCall(PetscQuadratureDestroy(&qGeom));
56683e9753d6SMatthew G. Knepley   }
56693e9753d6SMatthew G. Knepley   /*   Add contribution from X_t */
56709371c9d4SSatish Balay   if (hasDyn) {
56719371c9d4SSatish Balay     for (c = 0; c < numCells * totDim * totDim; ++c) elemMat[c] += X_tShift * elemMatD[c];
56729371c9d4SSatish Balay   }
56733e9753d6SMatthew G. Knepley   if (hasFV) {
56743e9753d6SMatthew G. Knepley     PetscClassId id;
56753e9753d6SMatthew G. Knepley     PetscFV      fv;
56763e9753d6SMatthew G. Knepley     PetscInt     offsetI, NcI, NbI = 1, fc, f;
56773e9753d6SMatthew G. Knepley 
56783e9753d6SMatthew G. Knepley     for (fieldI = 0; fieldI < Nf; ++fieldI) {
56799566063dSJacob Faibussowitsch       PetscCall(PetscDSGetDiscretization(prob, fieldI, (PetscObject *)&fv));
56809566063dSJacob Faibussowitsch       PetscCall(PetscDSGetFieldOffset(prob, fieldI, &offsetI));
56819566063dSJacob Faibussowitsch       PetscCall(PetscObjectGetClassId((PetscObject)fv, &id));
56823e9753d6SMatthew G. Knepley       if (id != PETSCFV_CLASSID) continue;
56833e9753d6SMatthew G. Knepley       /* Put in the identity */
56849566063dSJacob Faibussowitsch       PetscCall(PetscFVGetNumComponents(fv, &NcI));
56853e9753d6SMatthew G. Knepley       for (c = cStart; c < cEnd; ++c) {
56863e9753d6SMatthew G. Knepley         const PetscInt cind    = c - cStart;
56873e9753d6SMatthew G. Knepley         const PetscInt eOffset = cind * totDim * totDim;
56883e9753d6SMatthew G. Knepley         for (fc = 0; fc < NcI; ++fc) {
56893e9753d6SMatthew G. Knepley           for (f = 0; f < NbI; ++f) {
56903e9753d6SMatthew G. Knepley             const PetscInt i = offsetI + f * NcI + fc;
56913e9753d6SMatthew G. Knepley             if (hasPrec) {
5692ad540459SPierre Jolivet               if (hasJac) elemMat[eOffset + i * totDim + i] = 1.0;
56933e9753d6SMatthew G. Knepley               elemMatP[eOffset + i * totDim + i] = 1.0;
56949371c9d4SSatish Balay             } else {
56959371c9d4SSatish Balay               elemMat[eOffset + i * totDim + i] = 1.0;
56969371c9d4SSatish Balay             }
56973e9753d6SMatthew G. Knepley           }
56983e9753d6SMatthew G. Knepley         }
56993e9753d6SMatthew G. Knepley       }
57003e9753d6SMatthew G. Knepley     }
57013e9753d6SMatthew G. Knepley     /* No allocated space for FV stuff, so ignore the zero entries */
57029566063dSJacob Faibussowitsch     PetscCall(MatSetOption(JacP, MAT_IGNORE_ZERO_ENTRIES, PETSC_TRUE));
57033e9753d6SMatthew G. Knepley   }
57043e9753d6SMatthew G. Knepley   /* Insert values into matrix */
57053e9753d6SMatthew G. Knepley   for (c = cStart; c < cEnd; ++c) {
57063e9753d6SMatthew G. Knepley     const PetscInt cell = cells ? cells[c] : c;
57073e9753d6SMatthew G. Knepley     const PetscInt cind = c - cStart;
57083e9753d6SMatthew G. Knepley 
57093e9753d6SMatthew G. Knepley     /* Transform to global basis before insertion in Jacobian */
57109566063dSJacob Faibussowitsch     if (transform) PetscCall(DMPlexBasisTransformPointTensor_Internal(dm, tdm, tv, cell, PETSC_TRUE, totDim, &elemMat[cind * totDim * totDim]));
57113e9753d6SMatthew G. Knepley     if (hasPrec) {
57123e9753d6SMatthew G. Knepley       if (hasJac) {
57139566063dSJacob Faibussowitsch         if (mesh->printFEM > 1) PetscCall(DMPrintCellMatrix(cell, name, totDim, totDim, &elemMat[cind * totDim * totDim]));
57149566063dSJacob Faibussowitsch         PetscCall(DMPlexMatSetClosure(dm, section, globalSection, Jac, cell, &elemMat[cind * totDim * totDim], ADD_VALUES));
57153e9753d6SMatthew G. Knepley       }
57169566063dSJacob Faibussowitsch       if (mesh->printFEM > 1) PetscCall(DMPrintCellMatrix(cell, name, totDim, totDim, &elemMatP[cind * totDim * totDim]));
57179566063dSJacob Faibussowitsch       PetscCall(DMPlexMatSetClosure(dm, section, globalSection, JacP, cell, &elemMatP[cind * totDim * totDim], ADD_VALUES));
57183e9753d6SMatthew G. Knepley     } else {
57193e9753d6SMatthew G. Knepley       if (hasJac) {
57209566063dSJacob Faibussowitsch         if (mesh->printFEM > 1) PetscCall(DMPrintCellMatrix(cell, name, totDim, totDim, &elemMat[cind * totDim * totDim]));
57219566063dSJacob Faibussowitsch         PetscCall(DMPlexMatSetClosure(dm, section, globalSection, JacP, cell, &elemMat[cind * totDim * totDim], ADD_VALUES));
57223e9753d6SMatthew G. Knepley       }
57233e9753d6SMatthew G. Knepley     }
57243e9753d6SMatthew G. Knepley   }
57259566063dSJacob Faibussowitsch   PetscCall(ISRestorePointRange(cellIS, &cStart, &cEnd, &cells));
57269566063dSJacob Faibussowitsch   if (hasFV) PetscCall(MatSetOption(JacP, MAT_IGNORE_ZERO_ENTRIES, PETSC_FALSE));
57279566063dSJacob Faibussowitsch   PetscCall(PetscFree5(u, u_t, elemMat, elemMatP, elemMatD));
57283e9753d6SMatthew G. Knepley   if (dmAux) {
57299566063dSJacob Faibussowitsch     PetscCall(PetscFree(a));
57309566063dSJacob Faibussowitsch     PetscCall(DMDestroy(&plex));
57313e9753d6SMatthew G. Knepley   }
57323e9753d6SMatthew G. Knepley   /* Compute boundary integrals */
57339566063dSJacob Faibussowitsch   PetscCall(DMPlexComputeBdJacobian_Internal(dm, X, X_t, t, X_tShift, Jac, JacP, user));
57343e9753d6SMatthew G. Knepley   /* Assemble matrix */
57359371c9d4SSatish Balay end : {
5736e04ae0b4SMatthew G. Knepley   PetscBool assOp = hasJac && hasPrec ? PETSC_TRUE : PETSC_FALSE, gassOp;
5737e04ae0b4SMatthew G. Knepley 
5738712fec58SPierre Jolivet   PetscCall(MPIU_Allreduce(&assOp, &gassOp, 1, MPIU_BOOL, MPI_LOR, PetscObjectComm((PetscObject)dm)));
57393e9753d6SMatthew G. Knepley   if (hasJac && hasPrec) {
57409566063dSJacob Faibussowitsch     PetscCall(MatAssemblyBegin(Jac, MAT_FINAL_ASSEMBLY));
57419566063dSJacob Faibussowitsch     PetscCall(MatAssemblyEnd(Jac, MAT_FINAL_ASSEMBLY));
57423e9753d6SMatthew G. Knepley   }
5743e04ae0b4SMatthew G. Knepley }
57449566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(JacP, MAT_FINAL_ASSEMBLY));
57459566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(JacP, MAT_FINAL_ASSEMBLY));
57469566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(DMPLEX_JacobianFEM, dm, 0, 0, 0));
57473ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
57483e9753d6SMatthew G. Knepley }
57493e9753d6SMatthew G. Knepley 
5750d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeJacobian_Hybrid_Internal(DM dm, PetscFormKey key[], IS cellIS, PetscReal t, PetscReal X_tShift, Vec locX, Vec locX_t, Mat Jac, Mat JacP, void *user)
5751d71ae5a4SJacob Faibussowitsch {
57523e9753d6SMatthew G. Knepley   DM_Plex        *mesh          = (DM_Plex *)dm->data;
57533e9753d6SMatthew G. Knepley   const char     *name          = "Hybrid Jacobian";
5754148442b3SMatthew G. Knepley   DM              dmAux[3]      = {NULL, NULL, NULL};
5755148442b3SMatthew G. Knepley   DMLabel         ghostLabel    = NULL;
57563e9753d6SMatthew G. Knepley   DM              plex          = NULL;
57573e9753d6SMatthew G. Knepley   DM              plexA         = NULL;
5758148442b3SMatthew G. Knepley   PetscDS         ds            = NULL;
575907218a29SMatthew G. Knepley   PetscDS         dsIn          = NULL;
5760148442b3SMatthew G. Knepley   PetscDS         dsAux[3]      = {NULL, NULL, NULL};
5761148442b3SMatthew G. Knepley   Vec             locA[3]       = {NULL, NULL, NULL};
576207218a29SMatthew G. Knepley   DM              dmScale[3]    = {NULL, NULL, NULL};
576307218a29SMatthew G. Knepley   PetscDS         dsScale[3]    = {NULL, NULL, NULL};
576407218a29SMatthew G. Knepley   Vec             locS[3]       = {NULL, NULL, NULL};
57653e9753d6SMatthew G. Knepley   PetscSection    section       = NULL;
5766148442b3SMatthew G. Knepley   PetscSection    sectionAux[3] = {NULL, NULL, NULL};
57673e9753d6SMatthew G. Knepley   DMField         coordField    = NULL;
576807218a29SMatthew G. Knepley   PetscScalar    *a[3]          = {NULL, NULL, NULL};
576907218a29SMatthew G. Knepley   PetscScalar    *s[3]          = {NULL, NULL, NULL};
577007218a29SMatthew G. Knepley   PetscScalar    *u             = NULL, *u_t;
577107218a29SMatthew G. Knepley   PetscScalar    *elemMatNeg, *elemMatPos, *elemMatCoh;
577207218a29SMatthew G. Knepley   PetscScalar    *elemMatNegP, *elemMatPosP, *elemMatCohP;
5773e432b41dSStefano Zampini   PetscSection    globalSection;
57743e9753d6SMatthew G. Knepley   IS              chunkIS;
57753e9753d6SMatthew G. Knepley   const PetscInt *cells;
57763e9753d6SMatthew G. Knepley   PetscInt       *faces;
57773e9753d6SMatthew G. Knepley   PetscInt        cStart, cEnd, numCells;
5778*3e2b0218SMatthew G. Knepley   PetscInt        Nf, fieldI, fieldJ, totDim, totDimIn, totDimAux[3], totDimScale[3], numChunks, cellChunkSize, chunk;
57793e9753d6SMatthew G. Knepley   PetscInt        maxDegree  = PETSC_MAX_INT;
57803e9753d6SMatthew G. Knepley   PetscQuadrature affineQuad = NULL, *quads = NULL;
57813e9753d6SMatthew G. Knepley   PetscFEGeom    *affineGeom = NULL, **geoms = NULL;
5782e432b41dSStefano Zampini   PetscBool       hasBdJac, hasBdPrec;
57833e9753d6SMatthew G. Knepley 
57843e9753d6SMatthew G. Knepley   PetscFunctionBegin;
57853ba16761SJacob Faibussowitsch   if (!cellIS) PetscFunctionReturn(PETSC_SUCCESS);
5786437e83fbSMatthew G. Knepley   PetscCall(ISGetPointRange(cellIS, &cStart, &cEnd, &cells));
5787437e83fbSMatthew G. Knepley   PetscCall(ISGetLocalSize(cellIS, &numCells));
57883ba16761SJacob Faibussowitsch   if (cStart >= cEnd) PetscFunctionReturn(PETSC_SUCCESS);
57895fedec97SMatthew G. Knepley   if ((key[0].label == key[1].label) && (key[0].value == key[1].value) && (key[0].part == key[1].part)) {
57905fedec97SMatthew G. Knepley     const char *name;
57919566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetName((PetscObject)key[0].label, &name));
579263a3b9bcSJacob Faibussowitsch     SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Form keys for each side of a cohesive surface must be different (%s, %" PetscInt_FMT ", %" PetscInt_FMT ")", name, key[0].value, key[0].part);
57935fedec97SMatthew G. Knepley   }
57949566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(DMPLEX_JacobianFEM, dm, 0, 0, 0));
57959566063dSJacob Faibussowitsch   PetscCall(DMConvert(dm, DMPLEX, &plex));
57969566063dSJacob Faibussowitsch   PetscCall(DMGetSection(dm, &section));
57979566063dSJacob Faibussowitsch   PetscCall(DMGetGlobalSection(dm, &globalSection));
57989566063dSJacob Faibussowitsch   PetscCall(DMGetLabel(dm, "ghost", &ghostLabel));
579907218a29SMatthew G. Knepley   PetscCall(DMGetCellDS(dm, cells ? cells[cStart] : cStart, &ds, &dsIn));
58009566063dSJacob Faibussowitsch   PetscCall(PetscDSGetNumFields(ds, &Nf));
58019566063dSJacob Faibussowitsch   PetscCall(PetscDSGetTotalDimension(ds, &totDim));
580207218a29SMatthew G. Knepley   PetscCall(PetscDSGetTotalDimension(dsIn, &totDimIn));
58039566063dSJacob Faibussowitsch   PetscCall(PetscDSHasBdJacobian(ds, &hasBdJac));
58049566063dSJacob Faibussowitsch   PetscCall(PetscDSHasBdJacobianPreconditioner(ds, &hasBdPrec));
58059566063dSJacob Faibussowitsch   PetscCall(DMGetAuxiliaryVec(dm, key[2].label, key[2].value, key[2].part, &locA[2]));
5806148442b3SMatthew G. Knepley   if (locA[2]) {
58071059d808SMatthew G. Knepley     const PetscInt cellStart = cells ? cells[cStart] : cStart;
58081059d808SMatthew G. Knepley 
58099566063dSJacob Faibussowitsch     PetscCall(VecGetDM(locA[2], &dmAux[2]));
58109566063dSJacob Faibussowitsch     PetscCall(DMConvert(dmAux[2], DMPLEX, &plexA));
58119566063dSJacob Faibussowitsch     PetscCall(DMGetSection(dmAux[2], &sectionAux[2]));
581207218a29SMatthew G. Knepley     PetscCall(DMGetCellDS(dmAux[2], cellStart, &dsAux[2], NULL));
58139566063dSJacob Faibussowitsch     PetscCall(PetscDSGetTotalDimension(dsAux[2], &totDimAux[2]));
5814148442b3SMatthew G. Knepley     {
5815148442b3SMatthew G. Knepley       const PetscInt *cone;
5816148442b3SMatthew G. Knepley       PetscInt        c;
5817148442b3SMatthew G. Knepley 
58181059d808SMatthew G. Knepley       PetscCall(DMPlexGetCone(dm, cellStart, &cone));
5819148442b3SMatthew G. Knepley       for (c = 0; c < 2; ++c) {
5820148442b3SMatthew G. Knepley         const PetscInt *support;
5821148442b3SMatthew G. Knepley         PetscInt        ssize, s;
5822148442b3SMatthew G. Knepley 
58239566063dSJacob Faibussowitsch         PetscCall(DMPlexGetSupport(dm, cone[c], &support));
58249566063dSJacob Faibussowitsch         PetscCall(DMPlexGetSupportSize(dm, cone[c], &ssize));
58251059d808SMatthew G. Knepley         PetscCheck(ssize == 2, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Face %" PetscInt_FMT " from cell %" PetscInt_FMT " has support size %" PetscInt_FMT " != 2", cone[c], cellStart, ssize);
58261059d808SMatthew G. Knepley         if (support[0] == cellStart) s = 1;
58271059d808SMatthew G. Knepley         else if (support[1] == cellStart) s = 0;
58281059d808SMatthew G. Knepley         else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Face %" PetscInt_FMT " does not have cell %" PetscInt_FMT " in its support", cone[c], cellStart);
58299566063dSJacob Faibussowitsch         PetscCall(DMGetAuxiliaryVec(dm, key[c].label, key[c].value, key[c].part, &locA[c]));
58309566063dSJacob Faibussowitsch         if (locA[c]) PetscCall(VecGetDM(locA[c], &dmAux[c]));
5831ad540459SPierre Jolivet         else dmAux[c] = dmAux[2];
583207218a29SMatthew G. Knepley         PetscCall(DMGetCellDS(dmAux[c], support[s], &dsAux[c], NULL));
58339566063dSJacob Faibussowitsch         PetscCall(PetscDSGetTotalDimension(dsAux[c], &totDimAux[c]));
5834148442b3SMatthew G. Knepley       }
5835148442b3SMatthew G. Knepley     }
58363e9753d6SMatthew G. Knepley   }
583707218a29SMatthew G. Knepley   /* Handle mass matrix scaling
583807218a29SMatthew G. Knepley        The field in key[2] is the field to be scaled, and the scaling field is the first in the dsScale */
583907218a29SMatthew G. Knepley   PetscCall(DMGetAuxiliaryVec(dm, key[2].label, -key[2].value, key[2].part, &locS[2]));
584007218a29SMatthew G. Knepley   if (locS[2]) {
5841*3e2b0218SMatthew G. Knepley     const PetscInt cellStart = cells ? cells[cStart] : cStart;
584207218a29SMatthew G. Knepley     PetscInt       Nb, Nbs;
584307218a29SMatthew G. Knepley 
584407218a29SMatthew G. Knepley     PetscCall(VecGetDM(locS[2], &dmScale[2]));
584507218a29SMatthew G. Knepley     PetscCall(DMGetCellDS(dmScale[2], cells ? cells[cStart] : cStart, &dsScale[2], NULL));
584607218a29SMatthew G. Knepley     locS[1] = locS[0] = locS[2];
584707218a29SMatthew G. Knepley     dmScale[1] = dmScale[0] = dmScale[2];
584807218a29SMatthew G. Knepley     dsScale[1] = dsScale[0] = dsScale[2];
5849*3e2b0218SMatthew G. Knepley     PetscCall(PetscDSGetTotalDimension(dsScale[2], &totDimScale[2]));
585007218a29SMatthew G. Knepley     // BRAD: This is not set correctly
585107218a29SMatthew G. Knepley     key[2].field = 2;
585207218a29SMatthew G. Knepley     PetscCall(PetscDSGetFieldSize(ds, key[2].field, &Nb));
585307218a29SMatthew G. Knepley     PetscCall(PetscDSGetFieldSize(dsScale[2], 0, &Nbs));
585407218a29SMatthew G. Knepley     PetscCheck(Nb == Nbs, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "Field %" PetscInt_FMT " of size %" PetscInt_FMT " cannot be scaled by field of size %" PetscInt_FMT, key[2].field, Nb, Nbs);
5855*3e2b0218SMatthew G. Knepley     {
5856*3e2b0218SMatthew G. Knepley       const PetscInt *cone;
5857*3e2b0218SMatthew G. Knepley       PetscInt        c;
5858*3e2b0218SMatthew G. Knepley 
5859*3e2b0218SMatthew G. Knepley       locS[1] = locS[0] = locS[2];
5860*3e2b0218SMatthew G. Knepley       dmScale[1] = dmScale[0] = dmScale[2];
5861*3e2b0218SMatthew G. Knepley       PetscCall(DMPlexGetCone(dm, cellStart, &cone));
5862*3e2b0218SMatthew G. Knepley       for (c = 0; c < 2; ++c) {
5863*3e2b0218SMatthew G. Knepley         const PetscInt *support;
5864*3e2b0218SMatthew G. Knepley         PetscInt        ssize, s;
5865*3e2b0218SMatthew G. Knepley 
5866*3e2b0218SMatthew G. Knepley         PetscCall(DMPlexGetSupport(dm, cone[c], &support));
5867*3e2b0218SMatthew G. Knepley         PetscCall(DMPlexGetSupportSize(dm, cone[c], &ssize));
5868*3e2b0218SMatthew G. Knepley         PetscCheck(ssize == 2, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Face %" PetscInt_FMT " from cell %" PetscInt_FMT " has support size %" PetscInt_FMT " != 2", cone[c], cellStart, ssize);
5869*3e2b0218SMatthew G. Knepley         if (support[0] == cellStart) s = 1;
5870*3e2b0218SMatthew G. Knepley         else if (support[1] == cellStart) s = 0;
5871*3e2b0218SMatthew G. Knepley         else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Face %" PetscInt_FMT " does not have cell %" PetscInt_FMT " in its support", cone[c], cellStart);
5872*3e2b0218SMatthew G. Knepley         PetscCall(DMGetCellDS(dmScale[c], support[s], &dsScale[c], NULL));
5873*3e2b0218SMatthew G. Knepley         PetscCall(PetscDSGetTotalDimension(dsScale[c], &totDimScale[c]));
5874*3e2b0218SMatthew G. Knepley       }
5875*3e2b0218SMatthew G. Knepley     }
587607218a29SMatthew G. Knepley   }
587707218a29SMatthew G. Knepley   /* 2: Setup geometric data */
58789566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateField(dm, &coordField));
58799566063dSJacob Faibussowitsch   PetscCall(DMFieldGetDegree(coordField, cellIS, NULL, &maxDegree));
58803e9753d6SMatthew G. Knepley   if (maxDegree > 1) {
58813e9753d6SMatthew G. Knepley     PetscInt f;
58829566063dSJacob Faibussowitsch     PetscCall(PetscCalloc2(Nf, &quads, Nf, &geoms));
58833e9753d6SMatthew G. Knepley     for (f = 0; f < Nf; ++f) {
58843e9753d6SMatthew G. Knepley       PetscFE fe;
58853e9753d6SMatthew G. Knepley 
58869566063dSJacob Faibussowitsch       PetscCall(PetscDSGetDiscretization(ds, f, (PetscObject *)&fe));
58873e9753d6SMatthew G. Knepley       if (fe) {
58889566063dSJacob Faibussowitsch         PetscCall(PetscFEGetQuadrature(fe, &quads[f]));
58899566063dSJacob Faibussowitsch         PetscCall(PetscObjectReference((PetscObject)quads[f]));
58903e9753d6SMatthew G. Knepley       }
58913e9753d6SMatthew G. Knepley     }
58923e9753d6SMatthew G. Knepley   }
589307218a29SMatthew G. Knepley   /* Loop over chunks */
58943e9753d6SMatthew G. Knepley   cellChunkSize = numCells;
58953e9753d6SMatthew G. Knepley   numChunks     = !numCells ? 0 : PetscCeilReal(((PetscReal)numCells) / cellChunkSize);
589607218a29SMatthew G. Knepley   PetscCall(PetscCalloc1(2 * cellChunkSize, &faces));
5897a4158a15SMatthew G. Knepley   PetscCall(ISCreateGeneral(PETSC_COMM_SELF, 1 * cellChunkSize, faces, PETSC_USE_POINTER, &chunkIS));
589807218a29SMatthew G. Knepley   /* Extract field coefficients */
589907218a29SMatthew G. Knepley   /* NOTE This needs the end cap faces to have identical orientations */
590007218a29SMatthew G. Knepley   PetscCall(DMPlexGetHybridCellFields(dm, cellIS, locX, locX_t, locA[2], &u, &u_t, &a[2]));
590107218a29SMatthew G. Knepley   PetscCall(DMPlexGetHybridFields(dm, dmAux, dsAux, cellIS, locA, PETSC_TRUE, a));
590207218a29SMatthew G. Knepley   PetscCall(DMPlexGetHybridFields(dm, dmScale, dsScale, cellIS, locS, PETSC_FALSE, s));
590307218a29SMatthew G. Knepley   PetscCall(DMGetWorkArray(dm, hasBdJac ? cellChunkSize * totDim * totDim : 0, MPIU_SCALAR, &elemMatNeg));
590407218a29SMatthew G. Knepley   PetscCall(DMGetWorkArray(dm, hasBdJac ? cellChunkSize * totDim * totDim : 0, MPIU_SCALAR, &elemMatPos));
590507218a29SMatthew G. Knepley   PetscCall(DMGetWorkArray(dm, hasBdJac ? cellChunkSize * totDim * totDim : 0, MPIU_SCALAR, &elemMatCoh));
590607218a29SMatthew G. Knepley   PetscCall(DMGetWorkArray(dm, hasBdPrec ? cellChunkSize * totDim * totDim : 0, MPIU_SCALAR, &elemMatNegP));
590707218a29SMatthew G. Knepley   PetscCall(DMGetWorkArray(dm, hasBdPrec ? cellChunkSize * totDim * totDim : 0, MPIU_SCALAR, &elemMatPosP));
590807218a29SMatthew G. Knepley   PetscCall(DMGetWorkArray(dm, hasBdPrec ? cellChunkSize * totDim * totDim : 0, MPIU_SCALAR, &elemMatCohP));
59093e9753d6SMatthew G. Knepley   for (chunk = 0; chunk < numChunks; ++chunk) {
59103e9753d6SMatthew G. Knepley     PetscInt cS = cStart + chunk * cellChunkSize, cE = PetscMin(cS + cellChunkSize, cEnd), numCells = cE - cS, c;
59113e9753d6SMatthew G. Knepley 
591207218a29SMatthew G. Knepley     if (hasBdJac) {
591307218a29SMatthew G. Knepley       PetscCall(PetscArrayzero(elemMatNeg, cellChunkSize * totDim * totDim));
591407218a29SMatthew G. Knepley       PetscCall(PetscArrayzero(elemMatPos, cellChunkSize * totDim * totDim));
591507218a29SMatthew G. Knepley       PetscCall(PetscArrayzero(elemMatCoh, cellChunkSize * totDim * totDim));
591607218a29SMatthew G. Knepley     }
591707218a29SMatthew G. Knepley     if (hasBdPrec) {
591807218a29SMatthew G. Knepley       PetscCall(PetscArrayzero(elemMatNegP, cellChunkSize * totDim * totDim));
591907218a29SMatthew G. Knepley       PetscCall(PetscArrayzero(elemMatPosP, cellChunkSize * totDim * totDim));
592007218a29SMatthew G. Knepley       PetscCall(PetscArrayzero(elemMatCohP, cellChunkSize * totDim * totDim));
592107218a29SMatthew G. Knepley     }
59223e9753d6SMatthew G. Knepley     /* Get faces */
59233e9753d6SMatthew G. Knepley     for (c = cS; c < cE; ++c) {
59243e9753d6SMatthew G. Knepley       const PetscInt  cell = cells ? cells[c] : c;
59253e9753d6SMatthew G. Knepley       const PetscInt *cone;
59269566063dSJacob Faibussowitsch       PetscCall(DMPlexGetCone(plex, cell, &cone));
592707218a29SMatthew G. Knepley       faces[(c - cS) * 2 + 0] = cone[0];
592807218a29SMatthew G. Knepley       faces[(c - cS) * 2 + 1] = cone[1];
59293e9753d6SMatthew G. Knepley     }
593007218a29SMatthew G. Knepley     PetscCall(ISGeneralSetIndices(chunkIS, 2 * cellChunkSize, faces, PETSC_USE_POINTER));
59313e9753d6SMatthew G. Knepley     if (maxDegree <= 1) {
59329566063dSJacob Faibussowitsch       if (!affineQuad) PetscCall(DMFieldCreateDefaultQuadrature(coordField, chunkIS, &affineQuad));
59339566063dSJacob Faibussowitsch       if (affineQuad) PetscCall(DMSNESGetFEGeom(coordField, chunkIS, affineQuad, PETSC_TRUE, &affineGeom));
59343e9753d6SMatthew G. Knepley     } else {
59353e9753d6SMatthew G. Knepley       PetscInt f;
59363e9753d6SMatthew G. Knepley       for (f = 0; f < Nf; ++f) {
59379566063dSJacob Faibussowitsch         if (quads[f]) PetscCall(DMSNESGetFEGeom(coordField, chunkIS, quads[f], PETSC_TRUE, &geoms[f]));
59383e9753d6SMatthew G. Knepley       }
59393e9753d6SMatthew G. Knepley     }
59403e9753d6SMatthew G. Knepley 
59413e9753d6SMatthew G. Knepley     for (fieldI = 0; fieldI < Nf; ++fieldI) {
59423e9753d6SMatthew G. Knepley       PetscFE         feI;
59433e9753d6SMatthew G. Knepley       PetscFEGeom    *geom      = affineGeom ? affineGeom : geoms[fieldI];
59443e9753d6SMatthew G. Knepley       PetscFEGeom    *chunkGeom = NULL, *remGeom = NULL;
59453e9753d6SMatthew G. Knepley       PetscQuadrature quad = affineQuad ? affineQuad : quads[fieldI];
59463e9753d6SMatthew G. Knepley       PetscInt        numChunks, numBatches, batchSize, numBlocks, blockSize, Ne, Nr, offset, Nq, Nb;
59475fedec97SMatthew G. Knepley       PetscBool       isCohesiveField;
59483e9753d6SMatthew G. Knepley 
59499566063dSJacob Faibussowitsch       PetscCall(PetscDSGetDiscretization(ds, fieldI, (PetscObject *)&feI));
59503e9753d6SMatthew G. Knepley       if (!feI) continue;
59519566063dSJacob Faibussowitsch       PetscCall(PetscFEGetTileSizes(feI, NULL, &numBlocks, NULL, &numBatches));
59529566063dSJacob Faibussowitsch       PetscCall(PetscQuadratureGetData(quad, NULL, NULL, &Nq, NULL, NULL));
59539566063dSJacob Faibussowitsch       PetscCall(PetscFEGetDimension(feI, &Nb));
59543e9753d6SMatthew G. Knepley       blockSize = Nb;
59553e9753d6SMatthew G. Knepley       batchSize = numBlocks * blockSize;
59569566063dSJacob Faibussowitsch       PetscCall(PetscFESetTileSizes(feI, blockSize, numBlocks, batchSize, numBatches));
59573e9753d6SMatthew G. Knepley       numChunks = numCells / (numBatches * batchSize);
59583e9753d6SMatthew G. Knepley       Ne        = numChunks * numBatches * batchSize;
59593e9753d6SMatthew G. Knepley       Nr        = numCells % (numBatches * batchSize);
59603e9753d6SMatthew G. Knepley       offset    = numCells - Nr;
596107218a29SMatthew G. Knepley       PetscCall(PetscFEGeomGetChunk(geom, 0, offset * 2, &chunkGeom));
596207218a29SMatthew G. Knepley       PetscCall(PetscFEGeomGetChunk(geom, offset * 2, numCells * 2, &remGeom));
59639566063dSJacob Faibussowitsch       PetscCall(PetscDSGetCohesive(ds, fieldI, &isCohesiveField));
59643e9753d6SMatthew G. Knepley       for (fieldJ = 0; fieldJ < Nf; ++fieldJ) {
59653e9753d6SMatthew G. Knepley         PetscFE feJ;
59663e9753d6SMatthew G. Knepley 
59679566063dSJacob Faibussowitsch         PetscCall(PetscDSGetDiscretization(ds, fieldJ, (PetscObject *)&feJ));
59683e9753d6SMatthew G. Knepley         if (!feJ) continue;
5969148442b3SMatthew G. Knepley         key[0].field = fieldI * Nf + fieldJ;
5970148442b3SMatthew G. Knepley         key[1].field = fieldI * Nf + fieldJ;
59715fedec97SMatthew G. Knepley         key[2].field = fieldI * Nf + fieldJ;
5972148442b3SMatthew G. Knepley         if (hasBdJac) {
597307218a29SMatthew G. Knepley           PetscCall(PetscFEIntegrateHybridJacobian(ds, dsIn, PETSCFE_JACOBIAN, key[0], 0, Ne, chunkGeom, u, u_t, dsAux[0], a[0], t, X_tShift, elemMatNeg));
597407218a29SMatthew G. Knepley           PetscCall(PetscFEIntegrateHybridJacobian(ds, dsIn, PETSCFE_JACOBIAN, key[0], 0, Nr, remGeom, &u[offset * totDimIn], u_t ? &u_t[offset * totDimIn] : NULL, dsAux[0], &a[0][offset * totDimAux[0]], t, X_tShift, &elemMatNeg[offset * totDim * totDim]));
597507218a29SMatthew G. Knepley           PetscCall(PetscFEIntegrateHybridJacobian(ds, dsIn, PETSCFE_JACOBIAN, key[1], 1, Ne, chunkGeom, u, u_t, dsAux[1], a[1], t, X_tShift, elemMatPos));
597607218a29SMatthew G. Knepley           PetscCall(PetscFEIntegrateHybridJacobian(ds, dsIn, PETSCFE_JACOBIAN, key[1], 1, Nr, remGeom, &u[offset * totDimIn], u_t ? &u_t[offset * totDimIn] : NULL, dsAux[1], &a[1][offset * totDimAux[1]], t, X_tShift, &elemMatPos[offset * totDim * totDim]));
5977148442b3SMatthew G. Knepley         }
5978148442b3SMatthew G. Knepley         if (hasBdPrec) {
597907218a29SMatthew G. Knepley           PetscCall(PetscFEIntegrateHybridJacobian(ds, dsIn, PETSCFE_JACOBIAN_PRE, key[0], 0, Ne, chunkGeom, u, u_t, dsAux[0], a[0], t, X_tShift, elemMatNegP));
598007218a29SMatthew G. Knepley           PetscCall(PetscFEIntegrateHybridJacobian(ds, dsIn, PETSCFE_JACOBIAN_PRE, key[0], 0, Nr, remGeom, &u[offset * totDimIn], u_t ? &u_t[offset * totDimIn] : NULL, dsAux[0], &a[0][offset * totDimAux[0]], t, X_tShift, &elemMatNegP[offset * totDim * totDim]));
598107218a29SMatthew G. Knepley           PetscCall(PetscFEIntegrateHybridJacobian(ds, dsIn, PETSCFE_JACOBIAN_PRE, key[1], 1, Ne, chunkGeom, u, u_t, dsAux[1], a[1], t, X_tShift, elemMatPosP));
598207218a29SMatthew G. Knepley           PetscCall(PetscFEIntegrateHybridJacobian(ds, dsIn, PETSCFE_JACOBIAN_PRE, key[1], 1, Nr, remGeom, &u[offset * totDimIn], u_t ? &u_t[offset * totDimIn] : NULL, dsAux[1], &a[1][offset * totDimAux[1]], t, X_tShift, &elemMatPosP[offset * totDim * totDim]));
5983148442b3SMatthew G. Knepley         }
59845fedec97SMatthew G. Knepley         if (hasBdJac) {
598507218a29SMatthew G. Knepley           PetscCall(PetscFEIntegrateHybridJacobian(ds, dsIn, PETSCFE_JACOBIAN, key[2], 2, Ne, chunkGeom, u, u_t, dsAux[2], a[2], t, X_tShift, elemMatCoh));
598607218a29SMatthew G. Knepley           PetscCall(PetscFEIntegrateHybridJacobian(ds, dsIn, PETSCFE_JACOBIAN, key[2], 2, Nr, remGeom, &u[offset * totDimIn], u_t ? &u_t[offset * totDimIn] : NULL, dsAux[2], &a[2][offset * totDimAux[2]], t, X_tShift, &elemMatCoh[offset * totDim * totDim]));
5987148442b3SMatthew G. Knepley         }
59885fedec97SMatthew G. Knepley         if (hasBdPrec) {
598907218a29SMatthew G. Knepley           PetscCall(PetscFEIntegrateHybridJacobian(ds, dsIn, PETSCFE_JACOBIAN_PRE, key[2], 2, Ne, chunkGeom, u, u_t, dsAux[2], a[2], t, X_tShift, elemMatCohP));
599007218a29SMatthew G. Knepley           PetscCall(PetscFEIntegrateHybridJacobian(ds, dsIn, PETSCFE_JACOBIAN_PRE, key[2], 2, Nr, remGeom, &u[offset * totDimIn], u_t ? &u_t[offset * totDimIn] : NULL, dsAux[2], &a[2][offset * totDimAux[2]], t, X_tShift, &elemMatCohP[offset * totDim * totDim]));
59913e9753d6SMatthew G. Knepley         }
59923e9753d6SMatthew G. Knepley       }
59939566063dSJacob Faibussowitsch       PetscCall(PetscFEGeomRestoreChunk(geom, offset, numCells, &remGeom));
59949566063dSJacob Faibussowitsch       PetscCall(PetscFEGeomRestoreChunk(geom, 0, offset, &chunkGeom));
59953e9753d6SMatthew G. Knepley     }
59963e9753d6SMatthew G. Knepley     /* Insert values into matrix */
59973e9753d6SMatthew G. Knepley     for (c = cS; c < cE; ++c) {
59983e9753d6SMatthew G. Knepley       const PetscInt cell = cells ? cells[c] : c;
599907218a29SMatthew G. Knepley       const PetscInt cind = c - cS, coff = cind * totDim * totDim;
600007218a29SMatthew G. Knepley       PetscInt       i, j;
60013e9753d6SMatthew G. Knepley 
600207218a29SMatthew G. Knepley       /* Scale element values */
600307218a29SMatthew G. Knepley       if (locS[0]) {
6004*3e2b0218SMatthew G. Knepley         PetscInt  Nb, soff = cind * totDimScale[0], off = 0;
600507218a29SMatthew G. Knepley         PetscBool cohesive;
600607218a29SMatthew G. Knepley 
600707218a29SMatthew G. Knepley         for (fieldI = 0; fieldI < Nf; ++fieldI) {
600807218a29SMatthew G. Knepley           PetscCall(PetscDSGetFieldSize(ds, fieldI, &Nb));
600907218a29SMatthew G. Knepley           PetscCall(PetscDSGetCohesive(ds, fieldI, &cohesive));
601007218a29SMatthew G. Knepley 
601107218a29SMatthew G. Knepley           if (fieldI == key[2].field) {
601207218a29SMatthew G. Knepley             PetscCheck(cohesive, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Scaling should not happen for face fields");
601307218a29SMatthew G. Knepley             // No cohesive scaling field is currently input
601407218a29SMatthew G. Knepley             for (i = 0; i < Nb; ++i)
601507218a29SMatthew G. Knepley               for (j = 0; j < totDim; ++j) elemMatCoh[coff + (off + i) * totDim + j] += s[0][soff + i] * elemMatNeg[coff + (off + i) * totDim + j] + s[1][soff + i] * elemMatPos[coff + (off + i) * totDim + j];
601607218a29SMatthew G. Knepley             off += Nb;
601707218a29SMatthew G. Knepley           } else {
601807218a29SMatthew G. Knepley             const PetscInt N = cohesive ? Nb : Nb * 2;
601907218a29SMatthew G. Knepley 
602007218a29SMatthew G. Knepley             for (i = 0; i < N; ++i)
602107218a29SMatthew G. Knepley               for (j = 0; j < totDim; ++j) elemMatCoh[coff + (off + i) * totDim + j] += elemMatNeg[coff + (off + i) * totDim + j] + elemMatPos[coff + (off + i) * totDim + j];
602207218a29SMatthew G. Knepley             off += N;
602307218a29SMatthew G. Knepley           }
602407218a29SMatthew G. Knepley         }
602507218a29SMatthew G. Knepley       } else {
602607218a29SMatthew G. Knepley         for (i = 0; i < totDim * totDim; ++i) elemMatCoh[coff + i] += elemMatNeg[coff + i] + elemMatPos[coff + i];
602707218a29SMatthew G. Knepley       }
60283e9753d6SMatthew G. Knepley       if (hasBdPrec) {
60293e9753d6SMatthew G. Knepley         if (hasBdJac) {
603007218a29SMatthew G. Knepley           if (mesh->printFEM > 1) PetscCall(DMPrintCellMatrix(cell, name, totDim, totDim, &elemMatCoh[cind * totDim * totDim]));
603107218a29SMatthew G. Knepley           PetscCall(DMPlexMatSetClosure(plex, section, globalSection, Jac, cell, &elemMatCoh[cind * totDim * totDim], ADD_VALUES));
60323e9753d6SMatthew G. Knepley         }
603307218a29SMatthew G. Knepley         if (mesh->printFEM > 1) PetscCall(DMPrintCellMatrix(cell, name, totDim, totDim, &elemMatCohP[cind * totDim * totDim]));
603407218a29SMatthew G. Knepley         PetscCall(DMPlexMatSetClosure(plex, section, globalSection, JacP, cell, &elemMatCohP[cind * totDim * totDim], ADD_VALUES));
60353e9753d6SMatthew G. Knepley       } else if (hasBdJac) {
603607218a29SMatthew G. Knepley         if (mesh->printFEM > 1) PetscCall(DMPrintCellMatrix(cell, name, totDim, totDim, &elemMatCoh[cind * totDim * totDim]));
603707218a29SMatthew G. Knepley         PetscCall(DMPlexMatSetClosure(plex, section, globalSection, JacP, cell, &elemMatCoh[cind * totDim * totDim], ADD_VALUES));
60383e9753d6SMatthew G. Knepley       }
60393e9753d6SMatthew G. Knepley     }
60403e9753d6SMatthew G. Knepley   }
60419566063dSJacob Faibussowitsch   PetscCall(DMPlexRestoreCellFields(dm, cellIS, locX, locX_t, locA[2], &u, &u_t, &a[2]));
604207218a29SMatthew G. Knepley   PetscCall(DMPlexRestoreHybridFields(dm, dmAux, dsAux, cellIS, locA, PETSC_TRUE, a));
604307218a29SMatthew G. Knepley   PetscCall(DMRestoreWorkArray(dm, hasBdJac ? cellChunkSize * totDim * totDim : 0, MPIU_SCALAR, &elemMatNeg));
604407218a29SMatthew G. Knepley   PetscCall(DMRestoreWorkArray(dm, hasBdJac ? cellChunkSize * totDim * totDim : 0, MPIU_SCALAR, &elemMatPos));
604507218a29SMatthew G. Knepley   PetscCall(DMRestoreWorkArray(dm, hasBdJac ? cellChunkSize * totDim * totDim : 0, MPIU_SCALAR, &elemMatCoh));
604607218a29SMatthew G. Knepley   PetscCall(DMRestoreWorkArray(dm, hasBdPrec ? cellChunkSize * totDim * totDim : 0, MPIU_SCALAR, &elemMatNegP));
604707218a29SMatthew G. Knepley   PetscCall(DMRestoreWorkArray(dm, hasBdPrec ? cellChunkSize * totDim * totDim : 0, MPIU_SCALAR, &elemMatPosP));
604807218a29SMatthew G. Knepley   PetscCall(DMRestoreWorkArray(dm, hasBdPrec ? cellChunkSize * totDim * totDim : 0, MPIU_SCALAR, &elemMatCohP));
60499566063dSJacob Faibussowitsch   PetscCall(PetscFree(faces));
60509566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&chunkIS));
60519566063dSJacob Faibussowitsch   PetscCall(ISRestorePointRange(cellIS, &cStart, &cEnd, &cells));
60523e9753d6SMatthew G. Knepley   if (maxDegree <= 1) {
60539566063dSJacob Faibussowitsch     PetscCall(DMSNESRestoreFEGeom(coordField, cellIS, affineQuad, PETSC_FALSE, &affineGeom));
60549566063dSJacob Faibussowitsch     PetscCall(PetscQuadratureDestroy(&affineQuad));
60553e9753d6SMatthew G. Knepley   } else {
60563e9753d6SMatthew G. Knepley     PetscInt f;
60573e9753d6SMatthew G. Knepley     for (f = 0; f < Nf; ++f) {
60589566063dSJacob Faibussowitsch       if (geoms) PetscCall(DMSNESRestoreFEGeom(coordField, cellIS, quads[f], PETSC_FALSE, &geoms[f]));
60599566063dSJacob Faibussowitsch       if (quads) PetscCall(PetscQuadratureDestroy(&quads[f]));
60603e9753d6SMatthew G. Knepley     }
60619566063dSJacob Faibussowitsch     PetscCall(PetscFree2(quads, geoms));
60623e9753d6SMatthew G. Knepley   }
60639566063dSJacob Faibussowitsch   if (dmAux[2]) PetscCall(DMDestroy(&plexA));
60649566063dSJacob Faibussowitsch   PetscCall(DMDestroy(&plex));
60659566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(DMPLEX_JacobianFEM, dm, 0, 0, 0));
60663ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
60673e9753d6SMatthew G. Knepley }
60688e3a2eefSMatthew G. Knepley 
60698e3a2eefSMatthew G. Knepley /*
60708e3a2eefSMatthew G. Knepley   DMPlexComputeJacobian_Action_Internal - Form the local portion of the Jacobian action Z = J(X) Y at the local solution X using pointwise functions specified by the user.
60718e3a2eefSMatthew G. Knepley 
60728e3a2eefSMatthew G. Knepley   Input Parameters:
60738e3a2eefSMatthew G. Knepley + dm     - The mesh
60748e3a2eefSMatthew G. Knepley . key    - The PetscWeakFormKey indcating where integration should happen
607506ad1575SMatthew G. Knepley . cellIS - The cells to integrate over
60768e3a2eefSMatthew G. Knepley . t      - The time
60778e3a2eefSMatthew G. Knepley . X_tShift - The multiplier for the Jacobian with repsect to X_t
60788e3a2eefSMatthew G. Knepley . X      - Local solution vector
60798e3a2eefSMatthew G. Knepley . X_t    - Time-derivative of the local solution vector
60808e3a2eefSMatthew G. Knepley . Y      - Local input vector
608106ad1575SMatthew G. Knepley - user   - the user context
60828e3a2eefSMatthew G. Knepley 
60838e3a2eefSMatthew G. Knepley   Output Parameter:
60848e3a2eefSMatthew G. Knepley . Z - Local output vector
60858e3a2eefSMatthew G. Knepley 
60868e3a2eefSMatthew G. Knepley   Note:
60878e3a2eefSMatthew G. Knepley   We form the residual one batch of elements at a time. This allows us to offload work onto an accelerator,
60888e3a2eefSMatthew G. Knepley   like a GPU, or vectorize on a multicore machine.
60898e3a2eefSMatthew G. Knepley */
6090d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeJacobian_Action_Internal(DM dm, PetscFormKey key, IS cellIS, PetscReal t, PetscReal X_tShift, Vec X, Vec X_t, Vec Y, Vec Z, void *user)
6091d71ae5a4SJacob Faibussowitsch {
60928e3a2eefSMatthew G. Knepley   DM_Plex        *mesh  = (DM_Plex *)dm->data;
60938e3a2eefSMatthew G. Knepley   const char     *name  = "Jacobian";
60948e3a2eefSMatthew G. Knepley   DM              dmAux = NULL, plex, plexAux = NULL;
60958e3a2eefSMatthew G. Knepley   DMEnclosureType encAux;
60968e3a2eefSMatthew G. Knepley   Vec             A;
60978e3a2eefSMatthew G. Knepley   DMField         coordField;
60988e3a2eefSMatthew G. Knepley   PetscDS         prob, probAux = NULL;
60998e3a2eefSMatthew G. Knepley   PetscQuadrature quad;
61008e3a2eefSMatthew G. Knepley   PetscSection    section, globalSection, sectionAux;
61018e3a2eefSMatthew G. Knepley   PetscScalar    *elemMat, *elemMatD, *u, *u_t, *a = NULL, *y, *z;
61028e3a2eefSMatthew G. Knepley   const PetscInt *cells;
61038e3a2eefSMatthew G. Knepley   PetscInt        Nf, fieldI, fieldJ;
61048e3a2eefSMatthew G. Knepley   PetscInt        totDim, totDimAux = 0, cStart, cEnd, numCells, c;
61058e3a2eefSMatthew G. Knepley   PetscBool       hasDyn;
61068e3a2eefSMatthew G. Knepley 
61078e3a2eefSMatthew G. Knepley   PetscFunctionBegin;
61089566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(DMPLEX_JacobianFEM, dm, 0, 0, 0));
61099566063dSJacob Faibussowitsch   PetscCall(DMConvert(dm, DMPLEX, &plex));
61108e3a2eefSMatthew G. Knepley   if (!cellIS) {
61118e3a2eefSMatthew G. Knepley     PetscInt depth;
61128e3a2eefSMatthew G. Knepley 
61139566063dSJacob Faibussowitsch     PetscCall(DMPlexGetDepth(plex, &depth));
61149566063dSJacob Faibussowitsch     PetscCall(DMGetStratumIS(plex, "dim", depth, &cellIS));
61159566063dSJacob Faibussowitsch     if (!cellIS) PetscCall(DMGetStratumIS(plex, "depth", depth, &cellIS));
61168e3a2eefSMatthew G. Knepley   } else {
61179566063dSJacob Faibussowitsch     PetscCall(PetscObjectReference((PetscObject)cellIS));
61188e3a2eefSMatthew G. Knepley   }
61199566063dSJacob Faibussowitsch   PetscCall(ISGetLocalSize(cellIS, &numCells));
61209566063dSJacob Faibussowitsch   PetscCall(ISGetPointRange(cellIS, &cStart, &cEnd, &cells));
61219566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dm, &section));
61229566063dSJacob Faibussowitsch   PetscCall(DMGetGlobalSection(dm, &globalSection));
612307218a29SMatthew G. Knepley   PetscCall(DMGetCellDS(dm, cells ? cells[cStart] : cStart, &prob, NULL));
61249566063dSJacob Faibussowitsch   PetscCall(PetscDSGetNumFields(prob, &Nf));
61259566063dSJacob Faibussowitsch   PetscCall(PetscDSGetTotalDimension(prob, &totDim));
61269566063dSJacob Faibussowitsch   PetscCall(PetscDSHasDynamicJacobian(prob, &hasDyn));
61278e3a2eefSMatthew G. Knepley   hasDyn = hasDyn && (X_tShift != 0.0) ? PETSC_TRUE : PETSC_FALSE;
61289566063dSJacob Faibussowitsch   PetscCall(DMGetAuxiliaryVec(dm, key.label, key.value, key.part, &A));
61298e3a2eefSMatthew G. Knepley   if (A) {
61309566063dSJacob Faibussowitsch     PetscCall(VecGetDM(A, &dmAux));
61319566063dSJacob Faibussowitsch     PetscCall(DMGetEnclosureRelation(dmAux, dm, &encAux));
61329566063dSJacob Faibussowitsch     PetscCall(DMConvert(dmAux, DMPLEX, &plexAux));
61339566063dSJacob Faibussowitsch     PetscCall(DMGetLocalSection(plexAux, &sectionAux));
61349566063dSJacob Faibussowitsch     PetscCall(DMGetDS(dmAux, &probAux));
61359566063dSJacob Faibussowitsch     PetscCall(PetscDSGetTotalDimension(probAux, &totDimAux));
61368e3a2eefSMatthew G. Knepley   }
61379566063dSJacob Faibussowitsch   PetscCall(VecSet(Z, 0.0));
61389566063dSJacob Faibussowitsch   PetscCall(PetscMalloc6(numCells * totDim, &u, X_t ? numCells * totDim : 0, &u_t, numCells * totDim * totDim, &elemMat, hasDyn ? numCells * totDim * totDim : 0, &elemMatD, numCells * totDim, &y, totDim, &z));
61399566063dSJacob Faibussowitsch   if (dmAux) PetscCall(PetscMalloc1(numCells * totDimAux, &a));
61409566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateField(dm, &coordField));
61418e3a2eefSMatthew G. Knepley   for (c = cStart; c < cEnd; ++c) {
61428e3a2eefSMatthew G. Knepley     const PetscInt cell = cells ? cells[c] : c;
61438e3a2eefSMatthew G. Knepley     const PetscInt cind = c - cStart;
61448e3a2eefSMatthew G. Knepley     PetscScalar   *x = NULL, *x_t = NULL;
61458e3a2eefSMatthew G. Knepley     PetscInt       i;
61468e3a2eefSMatthew G. Knepley 
61479566063dSJacob Faibussowitsch     PetscCall(DMPlexVecGetClosure(plex, section, X, cell, NULL, &x));
61488e3a2eefSMatthew G. Knepley     for (i = 0; i < totDim; ++i) u[cind * totDim + i] = x[i];
61499566063dSJacob Faibussowitsch     PetscCall(DMPlexVecRestoreClosure(plex, section, X, cell, NULL, &x));
61508e3a2eefSMatthew G. Knepley     if (X_t) {
61519566063dSJacob Faibussowitsch       PetscCall(DMPlexVecGetClosure(plex, section, X_t, cell, NULL, &x_t));
61528e3a2eefSMatthew G. Knepley       for (i = 0; i < totDim; ++i) u_t[cind * totDim + i] = x_t[i];
61539566063dSJacob Faibussowitsch       PetscCall(DMPlexVecRestoreClosure(plex, section, X_t, cell, NULL, &x_t));
61548e3a2eefSMatthew G. Knepley     }
61558e3a2eefSMatthew G. Knepley     if (dmAux) {
61568e3a2eefSMatthew G. Knepley       PetscInt subcell;
61579566063dSJacob Faibussowitsch       PetscCall(DMGetEnclosurePoint(dmAux, dm, encAux, cell, &subcell));
61589566063dSJacob Faibussowitsch       PetscCall(DMPlexVecGetClosure(plexAux, sectionAux, A, subcell, NULL, &x));
61598e3a2eefSMatthew G. Knepley       for (i = 0; i < totDimAux; ++i) a[cind * totDimAux + i] = x[i];
61609566063dSJacob Faibussowitsch       PetscCall(DMPlexVecRestoreClosure(plexAux, sectionAux, A, subcell, NULL, &x));
61618e3a2eefSMatthew G. Knepley     }
61629566063dSJacob Faibussowitsch     PetscCall(DMPlexVecGetClosure(plex, section, Y, cell, NULL, &x));
61638e3a2eefSMatthew G. Knepley     for (i = 0; i < totDim; ++i) y[cind * totDim + i] = x[i];
61649566063dSJacob Faibussowitsch     PetscCall(DMPlexVecRestoreClosure(plex, section, Y, cell, NULL, &x));
61658e3a2eefSMatthew G. Knepley   }
61669566063dSJacob Faibussowitsch   PetscCall(PetscArrayzero(elemMat, numCells * totDim * totDim));
61679566063dSJacob Faibussowitsch   if (hasDyn) PetscCall(PetscArrayzero(elemMatD, numCells * totDim * totDim));
61688e3a2eefSMatthew G. Knepley   for (fieldI = 0; fieldI < Nf; ++fieldI) {
61698e3a2eefSMatthew G. Knepley     PetscFE  fe;
61708e3a2eefSMatthew G. Knepley     PetscInt Nb;
61718e3a2eefSMatthew G. Knepley     /* Conforming batches */
61728e3a2eefSMatthew G. Knepley     PetscInt numChunks, numBatches, numBlocks, Ne, blockSize, batchSize;
61738e3a2eefSMatthew G. Knepley     /* Remainder */
61748e3a2eefSMatthew G. Knepley     PetscInt        Nr, offset, Nq;
61758e3a2eefSMatthew G. Knepley     PetscQuadrature qGeom = NULL;
61768e3a2eefSMatthew G. Knepley     PetscInt        maxDegree;
61778e3a2eefSMatthew G. Knepley     PetscFEGeom    *cgeomFEM, *chunkGeom = NULL, *remGeom = NULL;
61788e3a2eefSMatthew G. Knepley 
61799566063dSJacob Faibussowitsch     PetscCall(PetscDSGetDiscretization(prob, fieldI, (PetscObject *)&fe));
61809566063dSJacob Faibussowitsch     PetscCall(PetscFEGetQuadrature(fe, &quad));
61819566063dSJacob Faibussowitsch     PetscCall(PetscFEGetDimension(fe, &Nb));
61829566063dSJacob Faibussowitsch     PetscCall(PetscFEGetTileSizes(fe, NULL, &numBlocks, NULL, &numBatches));
61839566063dSJacob Faibussowitsch     PetscCall(DMFieldGetDegree(coordField, cellIS, NULL, &maxDegree));
61849566063dSJacob Faibussowitsch     if (maxDegree <= 1) PetscCall(DMFieldCreateDefaultQuadrature(coordField, cellIS, &qGeom));
61858e3a2eefSMatthew G. Knepley     if (!qGeom) {
61869566063dSJacob Faibussowitsch       PetscCall(PetscFEGetQuadrature(fe, &qGeom));
61879566063dSJacob Faibussowitsch       PetscCall(PetscObjectReference((PetscObject)qGeom));
61888e3a2eefSMatthew G. Knepley     }
61899566063dSJacob Faibussowitsch     PetscCall(PetscQuadratureGetData(qGeom, NULL, NULL, &Nq, NULL, NULL));
61909566063dSJacob Faibussowitsch     PetscCall(DMSNESGetFEGeom(coordField, cellIS, qGeom, PETSC_FALSE, &cgeomFEM));
61918e3a2eefSMatthew G. Knepley     blockSize = Nb;
61928e3a2eefSMatthew G. Knepley     batchSize = numBlocks * blockSize;
61939566063dSJacob Faibussowitsch     PetscCall(PetscFESetTileSizes(fe, blockSize, numBlocks, batchSize, numBatches));
61948e3a2eefSMatthew G. Knepley     numChunks = numCells / (numBatches * batchSize);
61958e3a2eefSMatthew G. Knepley     Ne        = numChunks * numBatches * batchSize;
61968e3a2eefSMatthew G. Knepley     Nr        = numCells % (numBatches * batchSize);
61978e3a2eefSMatthew G. Knepley     offset    = numCells - Nr;
61989566063dSJacob Faibussowitsch     PetscCall(PetscFEGeomGetChunk(cgeomFEM, 0, offset, &chunkGeom));
61999566063dSJacob Faibussowitsch     PetscCall(PetscFEGeomGetChunk(cgeomFEM, offset, numCells, &remGeom));
62008e3a2eefSMatthew G. Knepley     for (fieldJ = 0; fieldJ < Nf; ++fieldJ) {
62018e3a2eefSMatthew G. Knepley       key.field = fieldI * Nf + fieldJ;
62029566063dSJacob Faibussowitsch       PetscCall(PetscFEIntegrateJacobian(prob, PETSCFE_JACOBIAN, key, Ne, chunkGeom, u, u_t, probAux, a, t, X_tShift, elemMat));
62039566063dSJacob Faibussowitsch       PetscCall(PetscFEIntegrateJacobian(prob, PETSCFE_JACOBIAN, key, Nr, remGeom, &u[offset * totDim], u_t ? &u_t[offset * totDim] : NULL, probAux, &a[offset * totDimAux], t, X_tShift, &elemMat[offset * totDim * totDim]));
62048e3a2eefSMatthew G. Knepley       if (hasDyn) {
62059566063dSJacob Faibussowitsch         PetscCall(PetscFEIntegrateJacobian(prob, PETSCFE_JACOBIAN_DYN, key, Ne, chunkGeom, u, u_t, probAux, a, t, X_tShift, elemMatD));
62069566063dSJacob Faibussowitsch         PetscCall(PetscFEIntegrateJacobian(prob, PETSCFE_JACOBIAN_DYN, key, Nr, remGeom, &u[offset * totDim], u_t ? &u_t[offset * totDim] : NULL, probAux, &a[offset * totDimAux], t, X_tShift, &elemMatD[offset * totDim * totDim]));
62078e3a2eefSMatthew G. Knepley       }
62088e3a2eefSMatthew G. Knepley     }
62099566063dSJacob Faibussowitsch     PetscCall(PetscFEGeomRestoreChunk(cgeomFEM, offset, numCells, &remGeom));
62109566063dSJacob Faibussowitsch     PetscCall(PetscFEGeomRestoreChunk(cgeomFEM, 0, offset, &chunkGeom));
62119566063dSJacob Faibussowitsch     PetscCall(DMSNESRestoreFEGeom(coordField, cellIS, qGeom, PETSC_FALSE, &cgeomFEM));
62129566063dSJacob Faibussowitsch     PetscCall(PetscQuadratureDestroy(&qGeom));
62138e3a2eefSMatthew G. Knepley   }
62148e3a2eefSMatthew G. Knepley   if (hasDyn) {
62158e3a2eefSMatthew G. Knepley     for (c = 0; c < numCells * totDim * totDim; ++c) elemMat[c] += X_tShift * elemMatD[c];
62168e3a2eefSMatthew G. Knepley   }
62178e3a2eefSMatthew G. Knepley   for (c = cStart; c < cEnd; ++c) {
62188e3a2eefSMatthew G. Knepley     const PetscInt     cell = cells ? cells[c] : c;
62198e3a2eefSMatthew G. Knepley     const PetscInt     cind = c - cStart;
62208e3a2eefSMatthew G. Knepley     const PetscBLASInt M = totDim, one = 1;
62218e3a2eefSMatthew G. Knepley     const PetscScalar  a = 1.0, b = 0.0;
62228e3a2eefSMatthew G. Knepley 
6223792fecdfSBarry Smith     PetscCallBLAS("BLASgemv", BLASgemv_("N", &M, &M, &a, &elemMat[cind * totDim * totDim], &M, &y[cind * totDim], &one, &b, z, &one));
62248e3a2eefSMatthew G. Knepley     if (mesh->printFEM > 1) {
62259566063dSJacob Faibussowitsch       PetscCall(DMPrintCellMatrix(c, name, totDim, totDim, &elemMat[cind * totDim * totDim]));
62269566063dSJacob Faibussowitsch       PetscCall(DMPrintCellVector(c, "Y", totDim, &y[cind * totDim]));
62279566063dSJacob Faibussowitsch       PetscCall(DMPrintCellVector(c, "Z", totDim, z));
62288e3a2eefSMatthew G. Knepley     }
62299566063dSJacob Faibussowitsch     PetscCall(DMPlexVecSetClosure(dm, section, Z, cell, z, ADD_VALUES));
62308e3a2eefSMatthew G. Knepley   }
62319566063dSJacob Faibussowitsch   PetscCall(PetscFree6(u, u_t, elemMat, elemMatD, y, z));
62328e3a2eefSMatthew G. Knepley   if (mesh->printFEM) {
62339566063dSJacob Faibussowitsch     PetscCall(PetscPrintf(PetscObjectComm((PetscObject)Z), "Z:\n"));
62349566063dSJacob Faibussowitsch     PetscCall(VecView(Z, NULL));
62358e3a2eefSMatthew G. Knepley   }
62361059d808SMatthew G. Knepley   PetscCall(ISRestorePointRange(cellIS, &cStart, &cEnd, &cells));
62379566063dSJacob Faibussowitsch   PetscCall(PetscFree(a));
62389566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&cellIS));
62399566063dSJacob Faibussowitsch   PetscCall(DMDestroy(&plexAux));
62409566063dSJacob Faibussowitsch   PetscCall(DMDestroy(&plex));
62419566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(DMPLEX_JacobianFEM, dm, 0, 0, 0));
62423ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
62438e3a2eefSMatthew G. Knepley }
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