1af0996ceSBarry Smith #include <petsc/private/dmpleximpl.h> /*I "petscdmplex.h" I*/ 2da97024aSMatthew G. Knepley #include <petscsf.h> 3cb1e1211SMatthew G Knepley 4e8f14785SLisandro Dalcin #include <petsc/private/hashsetij.h> 5af0996ceSBarry Smith #include <petsc/private/petscfeimpl.h> 6af0996ceSBarry Smith #include <petsc/private/petscfvimpl.h> 7a0845e3aSMatthew G. Knepley 82f856554SMatthew G. Knepley static PetscErrorCode DMPlexConvertPlex(DM dm, DM *plex, PetscBool copy) 92f856554SMatthew G. Knepley { 102f856554SMatthew G. Knepley PetscBool isPlex; 112f856554SMatthew G. Knepley PetscErrorCode ierr; 122f856554SMatthew G. Knepley 132f856554SMatthew G. Knepley PetscFunctionBegin; 142f856554SMatthew G. Knepley ierr = PetscObjectTypeCompare((PetscObject) dm, DMPLEX, &isPlex);CHKERRQ(ierr); 152f856554SMatthew G. Knepley if (isPlex) { 162f856554SMatthew G. Knepley *plex = dm; 172f856554SMatthew G. Knepley ierr = PetscObjectReference((PetscObject) dm);CHKERRQ(ierr); 182f856554SMatthew G. Knepley } else { 192f856554SMatthew G. Knepley ierr = PetscObjectQuery((PetscObject) dm, "dm_plex", (PetscObject *) plex);CHKERRQ(ierr); 202f856554SMatthew G. Knepley if (!*plex) { 212f856554SMatthew G. Knepley ierr = DMConvert(dm,DMPLEX,plex);CHKERRQ(ierr); 222f856554SMatthew G. Knepley ierr = PetscObjectCompose((PetscObject) dm, "dm_plex", (PetscObject) *plex);CHKERRQ(ierr); 232f856554SMatthew G. Knepley if (copy) { 242f856554SMatthew G. Knepley const char *comps[3] = {"A", "dmAux"}; 252f856554SMatthew G. Knepley PetscObject obj; 262f856554SMatthew G. Knepley PetscInt i; 272f856554SMatthew G. Knepley 282f856554SMatthew G. Knepley { 292f856554SMatthew G. Knepley /* Run the subdomain hook (this will copy the DMSNES/DMTS) */ 302f856554SMatthew G. Knepley DMSubDomainHookLink link; 312f856554SMatthew G. Knepley for (link = dm->subdomainhook; link; link = link->next) { 322f856554SMatthew G. Knepley if (link->ddhook) {ierr = (*link->ddhook)(dm, *plex, link->ctx);CHKERRQ(ierr);} 332f856554SMatthew G. Knepley } 342f856554SMatthew G. Knepley } 352f856554SMatthew G. Knepley for (i = 0; i < 3; i++) { 362f856554SMatthew G. Knepley ierr = PetscObjectQuery((PetscObject) dm, comps[i], &obj);CHKERRQ(ierr); 372f856554SMatthew G. Knepley ierr = PetscObjectCompose((PetscObject) *plex, comps[i], obj);CHKERRQ(ierr); 382f856554SMatthew G. Knepley } 392f856554SMatthew G. Knepley } 402f856554SMatthew G. Knepley } else { 412f856554SMatthew G. Knepley ierr = PetscObjectReference((PetscObject) *plex);CHKERRQ(ierr); 422f856554SMatthew G. Knepley } 432f856554SMatthew G. Knepley } 442f856554SMatthew G. Knepley PetscFunctionReturn(0); 452f856554SMatthew G. Knepley } 462f856554SMatthew G. Knepley 479b6f715bSMatthew G. Knepley static PetscErrorCode PetscContainerUserDestroy_PetscFEGeom (void *ctx) 489b6f715bSMatthew G. Knepley { 499b6f715bSMatthew G. Knepley PetscFEGeom *geom = (PetscFEGeom *) ctx; 509b6f715bSMatthew G. Knepley PetscErrorCode ierr; 519b6f715bSMatthew G. Knepley 529b6f715bSMatthew G. Knepley PetscFunctionBegin; 539b6f715bSMatthew G. Knepley ierr = PetscFEGeomDestroy(&geom);CHKERRQ(ierr); 549b6f715bSMatthew G. Knepley PetscFunctionReturn(0); 559b6f715bSMatthew G. Knepley } 569b6f715bSMatthew G. Knepley 579b6f715bSMatthew G. Knepley static PetscErrorCode DMPlexGetFEGeom(DMField coordField, IS pointIS, PetscQuadrature quad, PetscBool faceData, PetscFEGeom **geom) 589b6f715bSMatthew G. Knepley { 599b6f715bSMatthew G. Knepley char composeStr[33] = {0}; 609b6f715bSMatthew G. Knepley PetscObjectId id; 619b6f715bSMatthew G. Knepley PetscContainer container; 629b6f715bSMatthew G. Knepley PetscErrorCode ierr; 639b6f715bSMatthew G. Knepley 649b6f715bSMatthew G. Knepley PetscFunctionBegin; 659b6f715bSMatthew G. Knepley ierr = PetscObjectGetId((PetscObject)quad,&id);CHKERRQ(ierr); 669b6f715bSMatthew G. Knepley ierr = PetscSNPrintf(composeStr, 32, "DMPlexGetFEGeom_%x\n", id);CHKERRQ(ierr); 679b6f715bSMatthew G. Knepley ierr = PetscObjectQuery((PetscObject) pointIS, composeStr, (PetscObject *) &container);CHKERRQ(ierr); 689b6f715bSMatthew G. Knepley if (container) { 699b6f715bSMatthew G. Knepley ierr = PetscContainerGetPointer(container, (void **) geom);CHKERRQ(ierr); 709b6f715bSMatthew G. Knepley } else { 719b6f715bSMatthew G. Knepley ierr = DMFieldCreateFEGeom(coordField, pointIS, quad, faceData, geom);CHKERRQ(ierr); 729b6f715bSMatthew G. Knepley ierr = PetscContainerCreate(PETSC_COMM_SELF,&container);CHKERRQ(ierr); 739b6f715bSMatthew G. Knepley ierr = PetscContainerSetPointer(container, (void *) *geom);CHKERRQ(ierr); 749b6f715bSMatthew G. Knepley ierr = PetscContainerSetUserDestroy(container, PetscContainerUserDestroy_PetscFEGeom);CHKERRQ(ierr); 759b6f715bSMatthew G. Knepley ierr = PetscObjectCompose((PetscObject) pointIS, composeStr, (PetscObject) container);CHKERRQ(ierr); 769b6f715bSMatthew G. Knepley ierr = PetscContainerDestroy(&container);CHKERRQ(ierr); 779b6f715bSMatthew G. Knepley } 789b6f715bSMatthew G. Knepley PetscFunctionReturn(0); 799b6f715bSMatthew G. Knepley } 809b6f715bSMatthew G. Knepley 819b6f715bSMatthew G. Knepley static PetscErrorCode DMPlexRestoreFEGeom(DMField coordField, IS pointIS, PetscQuadrature quad, PetscBool faceData, PetscFEGeom **geom) 829b6f715bSMatthew G. Knepley { 839b6f715bSMatthew G. Knepley PetscFunctionBegin; 849b6f715bSMatthew G. Knepley *geom = NULL; 859b6f715bSMatthew G. Knepley PetscFunctionReturn(0); 869b6f715bSMatthew G. Knepley } 879b6f715bSMatthew G. Knepley 8846fa42a0SMatthew G. Knepley /*@ 8946fa42a0SMatthew G. Knepley DMPlexGetScale - Get the scale for the specified fundamental unit 9046fa42a0SMatthew G. Knepley 9146fa42a0SMatthew G. Knepley Not collective 9246fa42a0SMatthew G. Knepley 9346fa42a0SMatthew G. Knepley Input Arguments: 9446fa42a0SMatthew G. Knepley + dm - the DM 9546fa42a0SMatthew G. Knepley - unit - The SI unit 9646fa42a0SMatthew G. Knepley 9746fa42a0SMatthew G. Knepley Output Argument: 9846fa42a0SMatthew G. Knepley . scale - The value used to scale all quantities with this unit 9946fa42a0SMatthew G. Knepley 10046fa42a0SMatthew G. Knepley Level: advanced 10146fa42a0SMatthew G. Knepley 10246fa42a0SMatthew G. Knepley .seealso: DMPlexSetScale(), PetscUnit 10346fa42a0SMatthew G. Knepley @*/ 104cb1e1211SMatthew G Knepley PetscErrorCode DMPlexGetScale(DM dm, PetscUnit unit, PetscReal *scale) 105cb1e1211SMatthew G Knepley { 106cb1e1211SMatthew G Knepley DM_Plex *mesh = (DM_Plex*) dm->data; 107cb1e1211SMatthew G Knepley 108cb1e1211SMatthew G Knepley PetscFunctionBegin; 109cb1e1211SMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 110cb1e1211SMatthew G Knepley PetscValidPointer(scale, 3); 111cb1e1211SMatthew G Knepley *scale = mesh->scale[unit]; 112cb1e1211SMatthew G Knepley PetscFunctionReturn(0); 113cb1e1211SMatthew G Knepley } 114cb1e1211SMatthew G Knepley 11546fa42a0SMatthew G. Knepley /*@ 11646fa42a0SMatthew G. Knepley DMPlexSetScale - Set the scale for the specified fundamental unit 11746fa42a0SMatthew G. Knepley 11846fa42a0SMatthew G. Knepley Not collective 11946fa42a0SMatthew G. Knepley 12046fa42a0SMatthew G. Knepley Input Arguments: 12146fa42a0SMatthew G. Knepley + dm - the DM 12246fa42a0SMatthew G. Knepley . unit - The SI unit 12346fa42a0SMatthew G. Knepley - scale - The value used to scale all quantities with this unit 12446fa42a0SMatthew G. Knepley 12546fa42a0SMatthew G. Knepley Level: advanced 12646fa42a0SMatthew G. Knepley 12746fa42a0SMatthew G. Knepley .seealso: DMPlexGetScale(), PetscUnit 12846fa42a0SMatthew G. Knepley @*/ 129cb1e1211SMatthew G Knepley PetscErrorCode DMPlexSetScale(DM dm, PetscUnit unit, PetscReal scale) 130cb1e1211SMatthew G Knepley { 131cb1e1211SMatthew G Knepley DM_Plex *mesh = (DM_Plex*) dm->data; 132cb1e1211SMatthew G Knepley 133cb1e1211SMatthew G Knepley PetscFunctionBegin; 134cb1e1211SMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 135cb1e1211SMatthew G Knepley mesh->scale[unit] = scale; 136cb1e1211SMatthew G Knepley PetscFunctionReturn(0); 137cb1e1211SMatthew G Knepley } 138cb1e1211SMatthew G Knepley 139d1828a1cSMatthew G. Knepley static PetscErrorCode DMPlexProjectRigidBody_Private(PetscInt dim, PetscReal t, const PetscReal X[], PetscInt Nf, PetscScalar *mode, void *ctx) 140026175e5SToby Isaac { 14112adca46SMatthew G. Knepley const PetscInt eps[3][3][3] = {{{0, 0, 0}, {0, 0, 1}, {0, -1, 0}}, {{0, 0, -1}, {0, 0, 0}, {1, 0, 0}}, {{0, 1, 0}, {-1, 0, 0}, {0, 0, 0}}}; 142026175e5SToby Isaac PetscInt *ctxInt = (PetscInt *) ctx; 143ad917190SMatthew G. Knepley PetscInt dim2 = ctxInt[0]; 144026175e5SToby Isaac PetscInt d = ctxInt[1]; 145026175e5SToby Isaac PetscInt i, j, k = dim > 2 ? d - dim : d; 146026175e5SToby Isaac 147ad917190SMatthew G. Knepley PetscFunctionBegin; 148ff1e0c32SBarry Smith if (dim != dim2) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Input dimension %D does not match context dimension %D", dim, dim2); 149026175e5SToby Isaac for (i = 0; i < dim; i++) mode[i] = 0.; 150026175e5SToby Isaac if (d < dim) { 15112adca46SMatthew G. Knepley mode[d] = 1.; /* Translation along axis d */ 152ad917190SMatthew G. Knepley } else { 153026175e5SToby Isaac for (i = 0; i < dim; i++) { 154026175e5SToby Isaac for (j = 0; j < dim; j++) { 15512adca46SMatthew G. Knepley mode[j] += eps[i][j][k]*X[i]; /* Rotation about axis d */ 156026175e5SToby Isaac } 157026175e5SToby Isaac } 158026175e5SToby Isaac } 159ad917190SMatthew G. Knepley PetscFunctionReturn(0); 160026175e5SToby Isaac } 161026175e5SToby Isaac 162cc4e42d9SMartin Diehl /*@ 16312adca46SMatthew G. Knepley DMPlexCreateRigidBody - For the default global section, create rigid body modes by function space interpolation 164cb1e1211SMatthew G Knepley 165d083f849SBarry Smith Collective on dm 166cb1e1211SMatthew G Knepley 167cb1e1211SMatthew G Knepley Input Arguments: 168026175e5SToby Isaac . dm - the DM 169cb1e1211SMatthew G Knepley 170cb1e1211SMatthew G Knepley Output Argument: 171cb1e1211SMatthew G Knepley . sp - the null space 172cb1e1211SMatthew G Knepley 17312adca46SMatthew G. Knepley Note: This is necessary to provide a suitable coarse space for algebraic multigrid 174cb1e1211SMatthew G Knepley 175cb1e1211SMatthew G Knepley Level: advanced 176cb1e1211SMatthew G Knepley 17712adca46SMatthew G. Knepley .seealso: MatNullSpaceCreate(), PCGAMG 178cb1e1211SMatthew G Knepley @*/ 179026175e5SToby Isaac PetscErrorCode DMPlexCreateRigidBody(DM dm, MatNullSpace *sp) 180cb1e1211SMatthew G Knepley { 181cb1e1211SMatthew G Knepley MPI_Comm comm; 182026175e5SToby Isaac Vec mode[6]; 183026175e5SToby Isaac PetscSection section, globalSection; 184b247467aSMatthew G. Knepley PetscInt dim, dimEmbed, n, m, mmin, d, i, j; 185cb1e1211SMatthew G Knepley PetscErrorCode ierr; 186cb1e1211SMatthew G Knepley 187cb1e1211SMatthew G Knepley PetscFunctionBegin; 188cb1e1211SMatthew G Knepley ierr = PetscObjectGetComm((PetscObject)dm,&comm);CHKERRQ(ierr); 189c73cfb54SMatthew G. Knepley ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr); 1909d8fbdeaSMatthew G. Knepley ierr = DMGetCoordinateDim(dm, &dimEmbed);CHKERRQ(ierr); 191cb1e1211SMatthew G Knepley if (dim == 1) { 192cb1e1211SMatthew G Knepley ierr = MatNullSpaceCreate(comm, PETSC_TRUE, 0, NULL, sp);CHKERRQ(ierr); 193cb1e1211SMatthew G Knepley PetscFunctionReturn(0); 194cb1e1211SMatthew G Knepley } 19592fd8e1eSJed Brown ierr = DMGetLocalSection(dm, §ion);CHKERRQ(ierr); 196e87a4003SBarry Smith ierr = DMGetGlobalSection(dm, &globalSection);CHKERRQ(ierr); 197cb1e1211SMatthew G Knepley ierr = PetscSectionGetConstrainedStorageSize(globalSection, &n);CHKERRQ(ierr); 198b247467aSMatthew G. Knepley m = (dim*(dim+1))/2; 199cb1e1211SMatthew G Knepley ierr = VecCreate(comm, &mode[0]);CHKERRQ(ierr); 200cb1e1211SMatthew G Knepley ierr = VecSetSizes(mode[0], n, PETSC_DETERMINE);CHKERRQ(ierr); 201cb1e1211SMatthew G Knepley ierr = VecSetUp(mode[0]);CHKERRQ(ierr); 202b247467aSMatthew G. Knepley ierr = VecGetSize(mode[0], &n);CHKERRQ(ierr); 203b247467aSMatthew G. Knepley mmin = PetscMin(m, n); 204cb1e1211SMatthew G Knepley for (i = 1; i < m; ++i) {ierr = VecDuplicate(mode[0], &mode[i]);CHKERRQ(ierr);} 205026175e5SToby Isaac for (d = 0; d < m; d++) { 206330485fdSToby Isaac PetscInt ctx[2]; 207d1828a1cSMatthew G. Knepley PetscErrorCode (*func)(PetscInt, PetscReal, const PetscReal *, PetscInt, PetscScalar *, void *) = DMPlexProjectRigidBody_Private; 208026175e5SToby Isaac void *voidctx = (void *) (&ctx[0]); 209cb1e1211SMatthew G Knepley 2109d8fbdeaSMatthew G. Knepley ctx[0] = dimEmbed; 211330485fdSToby Isaac ctx[1] = d; 2120709b2feSToby Isaac ierr = DMProjectFunction(dm, 0.0, &func, &voidctx, INSERT_VALUES, mode[d]);CHKERRQ(ierr); 213cb1e1211SMatthew G Knepley } 2143b2202bfSJacob Faibussowitsch /* Orthonormalize system */ 215b50a2c0aSJacob Faibussowitsch for (i = 0; i < mmin; ++i) { 216b77f2eeeSJacob Faibussowitsch PetscScalar dots[6]; 217b50a2c0aSJacob Faibussowitsch 2189019a6d7SJacob Faibussowitsch ierr = VecNormalize(mode[i], NULL);CHKERRQ(ierr); 219b77f2eeeSJacob Faibussowitsch ierr = VecMDot(mode[i], mmin-i-1, mode+i+1, dots+i+1);CHKERRQ(ierr); 220b50a2c0aSJacob Faibussowitsch for (j = i+1; j < mmin; ++j) { 221b77f2eeeSJacob Faibussowitsch dots[j] *= -1.0; 222b77f2eeeSJacob Faibussowitsch ierr = VecAXPY(mode[j], dots[j], mode[i]);CHKERRQ(ierr); 223b50a2c0aSJacob Faibussowitsch } 224cb1e1211SMatthew G Knepley } 225b247467aSMatthew G. Knepley ierr = MatNullSpaceCreate(comm, PETSC_FALSE, mmin, mode, sp);CHKERRQ(ierr); 226b247467aSMatthew G. Knepley for (i = 0; i < m; ++i) {ierr = VecDestroy(&mode[i]);CHKERRQ(ierr);} 227cb1e1211SMatthew G Knepley PetscFunctionReturn(0); 228cb1e1211SMatthew G Knepley } 229cb1e1211SMatthew G Knepley 230cc4e42d9SMartin Diehl /*@ 23112adca46SMatthew G. Knepley DMPlexCreateRigidBodies - For the default global section, create rigid body modes by function space interpolation 23212adca46SMatthew G. Knepley 233d083f849SBarry Smith Collective on dm 23412adca46SMatthew G. Knepley 23512adca46SMatthew G. Knepley Input Arguments: 23612adca46SMatthew G. Knepley + dm - the DM 23712adca46SMatthew G. Knepley . nb - The number of bodies 23812adca46SMatthew G. Knepley . label - The DMLabel marking each domain 23912adca46SMatthew G. Knepley . nids - The number of ids per body 24012adca46SMatthew G. Knepley - ids - An array of the label ids in sequence for each domain 24112adca46SMatthew G. Knepley 24212adca46SMatthew G. Knepley Output Argument: 24312adca46SMatthew G. Knepley . sp - the null space 24412adca46SMatthew G. Knepley 24512adca46SMatthew G. Knepley Note: This is necessary to provide a suitable coarse space for algebraic multigrid 24612adca46SMatthew G. Knepley 24712adca46SMatthew G. Knepley Level: advanced 24812adca46SMatthew G. Knepley 24912adca46SMatthew G. Knepley .seealso: MatNullSpaceCreate() 25012adca46SMatthew G. Knepley @*/ 25112adca46SMatthew G. Knepley PetscErrorCode DMPlexCreateRigidBodies(DM dm, PetscInt nb, DMLabel label, const PetscInt nids[], const PetscInt ids[], MatNullSpace *sp) 25212adca46SMatthew G. Knepley { 25312adca46SMatthew G. Knepley MPI_Comm comm; 25412adca46SMatthew G. Knepley PetscSection section, globalSection; 25512adca46SMatthew G. Knepley Vec *mode; 25612adca46SMatthew G. Knepley PetscScalar *dots; 25712adca46SMatthew G. Knepley PetscInt dim, dimEmbed, n, m, b, d, i, j, off; 25812adca46SMatthew G. Knepley PetscErrorCode ierr; 25912adca46SMatthew G. Knepley 26012adca46SMatthew G. Knepley PetscFunctionBegin; 26112adca46SMatthew G. Knepley ierr = PetscObjectGetComm((PetscObject)dm,&comm);CHKERRQ(ierr); 26212adca46SMatthew G. Knepley ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr); 26312adca46SMatthew G. Knepley ierr = DMGetCoordinateDim(dm, &dimEmbed);CHKERRQ(ierr); 26492fd8e1eSJed Brown ierr = DMGetLocalSection(dm, §ion);CHKERRQ(ierr); 265e87a4003SBarry Smith ierr = DMGetGlobalSection(dm, &globalSection);CHKERRQ(ierr); 26612adca46SMatthew G. Knepley ierr = PetscSectionGetConstrainedStorageSize(globalSection, &n);CHKERRQ(ierr); 26712adca46SMatthew G. Knepley m = nb * (dim*(dim+1))/2; 26812adca46SMatthew G. Knepley ierr = PetscMalloc2(m, &mode, m, &dots);CHKERRQ(ierr); 26912adca46SMatthew G. Knepley ierr = VecCreate(comm, &mode[0]);CHKERRQ(ierr); 27012adca46SMatthew G. Knepley ierr = VecSetSizes(mode[0], n, PETSC_DETERMINE);CHKERRQ(ierr); 27112adca46SMatthew G. Knepley ierr = VecSetUp(mode[0]);CHKERRQ(ierr); 27212adca46SMatthew G. Knepley for (i = 1; i < m; ++i) {ierr = VecDuplicate(mode[0], &mode[i]);CHKERRQ(ierr);} 27312adca46SMatthew G. Knepley for (b = 0, off = 0; b < nb; ++b) { 27412adca46SMatthew G. Knepley for (d = 0; d < m/nb; ++d) { 27512adca46SMatthew G. Knepley PetscInt ctx[2]; 27612adca46SMatthew G. Knepley PetscErrorCode (*func)(PetscInt, PetscReal, const PetscReal *, PetscInt, PetscScalar *, void *) = DMPlexProjectRigidBody_Private; 27712adca46SMatthew G. Knepley void *voidctx = (void *) (&ctx[0]); 27812adca46SMatthew G. Knepley 27912adca46SMatthew G. Knepley ctx[0] = dimEmbed; 28012adca46SMatthew G. Knepley ctx[1] = d; 28112adca46SMatthew G. Knepley ierr = DMProjectFunctionLabel(dm, 0.0, label, nids[b], &ids[off], 0, NULL, &func, &voidctx, INSERT_VALUES, mode[d]);CHKERRQ(ierr); 28212adca46SMatthew G. Knepley off += nids[b]; 28312adca46SMatthew G. Knepley } 28412adca46SMatthew G. Knepley } 2853b2202bfSJacob Faibussowitsch /* Orthonormalize system */ 286606c1a1cSJacob Faibussowitsch for (i = 0; i < m; ++i) { 287b77f2eeeSJacob Faibussowitsch PetscScalar dots[6]; 2885a0e29b9SJacob Faibussowitsch 2899019a6d7SJacob Faibussowitsch ierr = VecNormalize(mode[i], NULL);CHKERRQ(ierr); 290b77f2eeeSJacob Faibussowitsch ierr = VecMDot(mode[i], m-i-1, mode+i+1, dots+i+1);CHKERRQ(ierr); 2915a0e29b9SJacob Faibussowitsch for (j = i+1; j < m; ++j) { 292b77f2eeeSJacob Faibussowitsch dots[j] *= -1.0; 293b77f2eeeSJacob Faibussowitsch ierr = VecAXPY(mode[j], dots[j], mode[i]);CHKERRQ(ierr); 2945a0e29b9SJacob Faibussowitsch } 29512adca46SMatthew G. Knepley } 29612adca46SMatthew G. Knepley ierr = MatNullSpaceCreate(comm, PETSC_FALSE, m, mode, sp);CHKERRQ(ierr); 29712adca46SMatthew G. Knepley for (i = 0; i< m; ++i) {ierr = VecDestroy(&mode[i]);CHKERRQ(ierr);} 29812adca46SMatthew G. Knepley ierr = PetscFree2(mode, dots);CHKERRQ(ierr); 29912adca46SMatthew G. Knepley PetscFunctionReturn(0); 30012adca46SMatthew G. Knepley } 30112adca46SMatthew G. Knepley 302b29cfa1cSToby Isaac /*@ 303b29cfa1cSToby Isaac DMPlexSetMaxProjectionHeight - In DMPlexProjectXXXLocal() functions, the projected values of a basis function's dofs 304b29cfa1cSToby Isaac are computed by associating the basis function with one of the mesh points in its transitively-closed support, and 305b29cfa1cSToby Isaac evaluating the dual space basis of that point. A basis function is associated with the point in its 306b29cfa1cSToby Isaac transitively-closed support whose mesh height is highest (w.r.t. DAG height), but not greater than the maximum 307b29cfa1cSToby Isaac projection height, which is set with this function. By default, the maximum projection height is zero, which means 308b29cfa1cSToby Isaac that only mesh cells are used to project basis functions. A height of one, for example, evaluates a cell-interior 309b29cfa1cSToby Isaac basis functions using its cells dual space basis, but all other basis functions with the dual space basis of a face. 310b29cfa1cSToby Isaac 311b29cfa1cSToby Isaac Input Parameters: 312b29cfa1cSToby Isaac + dm - the DMPlex object 313b29cfa1cSToby Isaac - height - the maximum projection height >= 0 314b29cfa1cSToby Isaac 315b29cfa1cSToby Isaac Level: advanced 316b29cfa1cSToby Isaac 3174d6f44ffSToby Isaac .seealso: DMPlexGetMaxProjectionHeight(), DMProjectFunctionLocal(), DMProjectFunctionLabelLocal() 318b29cfa1cSToby Isaac @*/ 319b29cfa1cSToby Isaac PetscErrorCode DMPlexSetMaxProjectionHeight(DM dm, PetscInt height) 320b29cfa1cSToby Isaac { 321b29cfa1cSToby Isaac DM_Plex *plex = (DM_Plex *) dm->data; 322b29cfa1cSToby Isaac 323b29cfa1cSToby Isaac PetscFunctionBegin; 324b29cfa1cSToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 325b29cfa1cSToby Isaac plex->maxProjectionHeight = height; 326b29cfa1cSToby Isaac PetscFunctionReturn(0); 327b29cfa1cSToby Isaac } 328b29cfa1cSToby Isaac 329b29cfa1cSToby Isaac /*@ 330b29cfa1cSToby Isaac DMPlexGetMaxProjectionHeight - Get the maximum height (w.r.t. DAG) of mesh points used to evaluate dual bases in 331b29cfa1cSToby Isaac DMPlexProjectXXXLocal() functions. 332b29cfa1cSToby Isaac 333b29cfa1cSToby Isaac Input Parameters: 334b29cfa1cSToby Isaac . dm - the DMPlex object 335b29cfa1cSToby Isaac 336b29cfa1cSToby Isaac Output Parameters: 337b29cfa1cSToby Isaac . height - the maximum projection height 338b29cfa1cSToby Isaac 339b29cfa1cSToby Isaac Level: intermediate 340b29cfa1cSToby Isaac 3414d6f44ffSToby Isaac .seealso: DMPlexSetMaxProjectionHeight(), DMProjectFunctionLocal(), DMProjectFunctionLabelLocal() 342b29cfa1cSToby Isaac @*/ 343b29cfa1cSToby Isaac PetscErrorCode DMPlexGetMaxProjectionHeight(DM dm, PetscInt *height) 344b29cfa1cSToby Isaac { 345b29cfa1cSToby Isaac DM_Plex *plex = (DM_Plex *) dm->data; 346b29cfa1cSToby Isaac 347b29cfa1cSToby Isaac PetscFunctionBegin; 348b29cfa1cSToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 349b29cfa1cSToby Isaac *height = plex->maxProjectionHeight; 350b29cfa1cSToby Isaac PetscFunctionReturn(0); 351b29cfa1cSToby Isaac } 352b29cfa1cSToby Isaac 353ca3d3a14SMatthew G. Knepley typedef struct { 354ca3d3a14SMatthew G. Knepley PetscReal alpha; /* The first Euler angle, and in 2D the only one */ 355ca3d3a14SMatthew G. Knepley PetscReal beta; /* The second Euler angle */ 356ca3d3a14SMatthew G. Knepley PetscReal gamma; /* The third Euler angle */ 357ca3d3a14SMatthew G. Knepley PetscInt dim; /* The dimension of R */ 358ca3d3a14SMatthew G. Knepley PetscScalar *R; /* The rotation matrix, transforming a vector in the local basis to the global basis */ 359ca3d3a14SMatthew G. Knepley PetscScalar *RT; /* The transposed rotation matrix, transforming a vector in the global basis to the local basis */ 360ca3d3a14SMatthew G. Knepley } RotCtx; 361ca3d3a14SMatthew G. Knepley 362ca3d3a14SMatthew G. Knepley /* 363ca3d3a14SMatthew G. Knepley Note: Following https://en.wikipedia.org/wiki/Euler_angles, we will specify Euler angles by extrinsic rotations, meaning that 364ca3d3a14SMatthew G. Knepley we rotate with respect to a fixed initial coordinate system, the local basis (x-y-z). The global basis (X-Y-Z) is reached as follows: 365ca3d3a14SMatthew G. Knepley $ The XYZ system rotates about the z axis by alpha. The X axis is now at angle alpha with respect to the x axis. 366ca3d3a14SMatthew G. Knepley $ The XYZ system rotates again about the x axis by beta. The Z axis is now at angle beta with respect to the z axis. 367ca3d3a14SMatthew G. Knepley $ The XYZ system rotates a third time about the z axis by gamma. 368ca3d3a14SMatthew G. Knepley */ 369ca3d3a14SMatthew G. Knepley static PetscErrorCode DMPlexBasisTransformSetUp_Rotation_Internal(DM dm, void *ctx) 370ca3d3a14SMatthew G. Knepley { 371ca3d3a14SMatthew G. Knepley RotCtx *rc = (RotCtx *) ctx; 372ca3d3a14SMatthew G. Knepley PetscInt dim = rc->dim; 373ca3d3a14SMatthew G. Knepley PetscReal c1, s1, c2, s2, c3, s3; 374ca3d3a14SMatthew G. Knepley PetscErrorCode ierr; 375ca3d3a14SMatthew G. Knepley 376ca3d3a14SMatthew G. Knepley PetscFunctionBegin; 377ca3d3a14SMatthew G. Knepley ierr = PetscMalloc2(PetscSqr(dim), &rc->R, PetscSqr(dim), &rc->RT);CHKERRQ(ierr); 378ca3d3a14SMatthew G. Knepley switch (dim) { 379ca3d3a14SMatthew G. Knepley case 2: 380ca3d3a14SMatthew G. Knepley c1 = PetscCosReal(rc->alpha);s1 = PetscSinReal(rc->alpha); 381ca3d3a14SMatthew G. Knepley rc->R[0] = c1;rc->R[1] = s1; 382ca3d3a14SMatthew G. Knepley rc->R[2] = -s1;rc->R[3] = c1; 383580bdb30SBarry Smith ierr = PetscArraycpy(rc->RT, rc->R, PetscSqr(dim));CHKERRQ(ierr); 384ca3d3a14SMatthew G. Knepley DMPlex_Transpose2D_Internal(rc->RT);break; 385ca3d3a14SMatthew G. Knepley break; 386ca3d3a14SMatthew G. Knepley case 3: 387ca3d3a14SMatthew G. Knepley c1 = PetscCosReal(rc->alpha);s1 = PetscSinReal(rc->alpha); 388ca3d3a14SMatthew G. Knepley c2 = PetscCosReal(rc->beta); s2 = PetscSinReal(rc->beta); 389ca3d3a14SMatthew G. Knepley c3 = PetscCosReal(rc->gamma);s3 = PetscSinReal(rc->gamma); 390ca3d3a14SMatthew G. Knepley rc->R[0] = c1*c3 - c2*s1*s3;rc->R[1] = c3*s1 + c1*c2*s3;rc->R[2] = s2*s3; 391ca3d3a14SMatthew G. Knepley rc->R[3] = -c1*s3 - c2*c3*s1;rc->R[4] = c1*c2*c3 - s1*s3; rc->R[5] = c3*s2; 392ca3d3a14SMatthew G. Knepley rc->R[6] = s1*s2; rc->R[7] = -c1*s2; rc->R[8] = c2; 393580bdb30SBarry Smith ierr = PetscArraycpy(rc->RT, rc->R, PetscSqr(dim));CHKERRQ(ierr); 394ca3d3a14SMatthew G. Knepley DMPlex_Transpose3D_Internal(rc->RT);break; 395ca3d3a14SMatthew G. Knepley break; 396ca3d3a14SMatthew G. Knepley default: SETERRQ1(PetscObjectComm((PetscObject) dm), PETSC_ERR_ARG_OUTOFRANGE, "Dimension %D not supported", dim); 397ca3d3a14SMatthew G. Knepley } 398ca3d3a14SMatthew G. Knepley PetscFunctionReturn(0); 399ca3d3a14SMatthew G. Knepley } 400ca3d3a14SMatthew G. Knepley 401ca3d3a14SMatthew G. Knepley static PetscErrorCode DMPlexBasisTransformDestroy_Rotation_Internal(DM dm, void *ctx) 402ca3d3a14SMatthew G. Knepley { 403ca3d3a14SMatthew G. Knepley RotCtx *rc = (RotCtx *) ctx; 404ca3d3a14SMatthew G. Knepley PetscErrorCode ierr; 405ca3d3a14SMatthew G. Knepley 406ca3d3a14SMatthew G. Knepley PetscFunctionBegin; 407ca3d3a14SMatthew G. Knepley ierr = PetscFree2(rc->R, rc->RT);CHKERRQ(ierr); 408ca3d3a14SMatthew G. Knepley ierr = PetscFree(rc);CHKERRQ(ierr); 409ca3d3a14SMatthew G. Knepley PetscFunctionReturn(0); 410ca3d3a14SMatthew G. Knepley } 411ca3d3a14SMatthew G. Knepley 412ca3d3a14SMatthew G. Knepley static PetscErrorCode DMPlexBasisTransformGetMatrix_Rotation_Internal(DM dm, const PetscReal x[], PetscBool l2g, const PetscScalar **A, void *ctx) 413ca3d3a14SMatthew G. Knepley { 414ca3d3a14SMatthew G. Knepley RotCtx *rc = (RotCtx *) ctx; 415ca3d3a14SMatthew G. Knepley 416ca3d3a14SMatthew G. Knepley PetscFunctionBeginHot; 417ca3d3a14SMatthew G. Knepley PetscValidPointer(ctx, 5); 418ca3d3a14SMatthew G. Knepley if (l2g) {*A = rc->R;} 419ca3d3a14SMatthew G. Knepley else {*A = rc->RT;} 420ca3d3a14SMatthew G. Knepley PetscFunctionReturn(0); 421ca3d3a14SMatthew G. Knepley } 422ca3d3a14SMatthew G. Knepley 423ab6a9622SMatthew G. Knepley PetscErrorCode DMPlexBasisTransformApplyReal_Internal(DM dm, const PetscReal x[], PetscBool l2g, PetscInt dim, const PetscReal *y, PetscReal *z, void *ctx) 424ab6a9622SMatthew G. Knepley { 425ec277c0fSMatthew G. Knepley PetscErrorCode ierr; 426ec277c0fSMatthew G. Knepley 427ec277c0fSMatthew G. Knepley PetscFunctionBegin; 428ab6a9622SMatthew G. Knepley #if defined(PETSC_USE_COMPLEX) 429ab6a9622SMatthew G. Knepley switch (dim) { 430ab6a9622SMatthew G. Knepley case 2: 431ab6a9622SMatthew G. Knepley { 432ab6a9622SMatthew G. Knepley PetscScalar yt[2], zt[2]; 433ab6a9622SMatthew G. Knepley 434ab6a9622SMatthew G. Knepley yt[0] = y[0]; yt[1] = y[1]; 435ec277c0fSMatthew G. Knepley ierr = DMPlexBasisTransformApply_Internal(dm, x, l2g, dim, yt, zt, ctx);CHKERRQ(ierr); 436ab6a9622SMatthew G. Knepley z[0] = PetscRealPart(zt[0]); z[1] = PetscRealPart(zt[1]); 437ab6a9622SMatthew G. Knepley } 4389b4815dcSMatthew G. Knepley break; 439ab6a9622SMatthew G. Knepley case 3: 440ab6a9622SMatthew G. Knepley { 441ab6a9622SMatthew G. Knepley PetscScalar yt[3], zt[3]; 442ab6a9622SMatthew G. Knepley 443ab6a9622SMatthew G. Knepley yt[0] = y[0]; yt[1] = y[1]; yt[2] = y[2]; 444ec277c0fSMatthew G. Knepley ierr = DMPlexBasisTransformApply_Internal(dm, x, l2g, dim, yt, zt, ctx);CHKERRQ(ierr); 445ab6a9622SMatthew G. Knepley z[0] = PetscRealPart(zt[0]); z[1] = PetscRealPart(zt[1]); z[2] = PetscRealPart(zt[2]); 446ab6a9622SMatthew G. Knepley } 4479b4815dcSMatthew G. Knepley break; 448ab6a9622SMatthew G. Knepley } 449ab6a9622SMatthew G. Knepley #else 450ab6a9622SMatthew G. Knepley ierr = DMPlexBasisTransformApply_Internal(dm, x, l2g, dim, y, z, ctx);CHKERRQ(ierr); 451ab6a9622SMatthew G. Knepley #endif 452ec277c0fSMatthew G. Knepley PetscFunctionReturn(0); 453ab6a9622SMatthew G. Knepley } 454ab6a9622SMatthew G. Knepley 455ec277c0fSMatthew G. Knepley PetscErrorCode DMPlexBasisTransformApply_Internal(DM dm, const PetscReal x[], PetscBool l2g, PetscInt dim, const PetscScalar *y, PetscScalar *z, void *ctx) 456ca3d3a14SMatthew G. Knepley { 457ca3d3a14SMatthew G. Knepley const PetscScalar *A; 458ca3d3a14SMatthew G. Knepley PetscErrorCode ierr; 459ca3d3a14SMatthew G. Knepley 460ca3d3a14SMatthew G. Knepley PetscFunctionBeginHot; 461ca3d3a14SMatthew G. Knepley ierr = (*dm->transformGetMatrix)(dm, x, l2g, &A, ctx);CHKERRQ(ierr); 462ca3d3a14SMatthew G. Knepley switch (dim) { 4631fba962aSMatthew G. Knepley case 2: DMPlex_Mult2D_Internal(A, 1, y, z);break; 4641fba962aSMatthew G. Knepley case 3: DMPlex_Mult3D_Internal(A, 1, y, z);break; 465ca3d3a14SMatthew G. Knepley } 466ca3d3a14SMatthew G. Knepley PetscFunctionReturn(0); 467ca3d3a14SMatthew G. Knepley } 468ca3d3a14SMatthew G. Knepley 469ca3d3a14SMatthew G. Knepley static PetscErrorCode DMPlexBasisTransformField_Internal(DM dm, DM tdm, Vec tv, PetscInt p, PetscInt f, PetscBool l2g, PetscScalar *a) 470ca3d3a14SMatthew G. Knepley { 471ca3d3a14SMatthew G. Knepley PetscSection ts; 472ca3d3a14SMatthew G. Knepley const PetscScalar *ta, *tva; 473ca3d3a14SMatthew G. Knepley PetscInt dof; 474ca3d3a14SMatthew G. Knepley PetscErrorCode ierr; 475ca3d3a14SMatthew G. Knepley 476ca3d3a14SMatthew G. Knepley PetscFunctionBeginHot; 47792fd8e1eSJed Brown ierr = DMGetLocalSection(tdm, &ts);CHKERRQ(ierr); 478ca3d3a14SMatthew G. Knepley ierr = PetscSectionGetFieldDof(ts, p, f, &dof);CHKERRQ(ierr); 479ca3d3a14SMatthew G. Knepley ierr = VecGetArrayRead(tv, &ta);CHKERRQ(ierr); 480ca3d3a14SMatthew G. Knepley ierr = DMPlexPointLocalFieldRead(tdm, p, f, ta, (void *) &tva);CHKERRQ(ierr); 481ca3d3a14SMatthew G. Knepley if (l2g) { 482ca3d3a14SMatthew G. Knepley switch (dof) { 4831fba962aSMatthew G. Knepley case 4: DMPlex_Mult2D_Internal(tva, 1, a, a);break; 4841fba962aSMatthew G. Knepley case 9: DMPlex_Mult3D_Internal(tva, 1, a, a);break; 485ca3d3a14SMatthew G. Knepley } 486ca3d3a14SMatthew G. Knepley } else { 487ca3d3a14SMatthew G. Knepley switch (dof) { 4881fba962aSMatthew G. Knepley case 4: DMPlex_MultTranspose2D_Internal(tva, 1, a, a);break; 4891fba962aSMatthew G. Knepley case 9: DMPlex_MultTranspose3D_Internal(tva, 1, a, a);break; 490ca3d3a14SMatthew G. Knepley } 491ca3d3a14SMatthew G. Knepley } 492ca3d3a14SMatthew G. Knepley ierr = VecRestoreArrayRead(tv, &ta);CHKERRQ(ierr); 493ca3d3a14SMatthew G. Knepley PetscFunctionReturn(0); 494ca3d3a14SMatthew G. Knepley } 495ca3d3a14SMatthew G. Knepley 496ca3d3a14SMatthew G. Knepley static PetscErrorCode DMPlexBasisTransformFieldTensor_Internal(DM dm, DM tdm, Vec tv, PetscInt pf, PetscInt f, PetscInt pg, PetscInt g, PetscBool l2g, PetscInt lda, PetscScalar *a) 497ca3d3a14SMatthew G. Knepley { 498ca3d3a14SMatthew G. Knepley PetscSection s, ts; 499ca3d3a14SMatthew G. Knepley const PetscScalar *ta, *tvaf, *tvag; 500ca3d3a14SMatthew G. Knepley PetscInt fdof, gdof, fpdof, gpdof; 501ca3d3a14SMatthew G. Knepley PetscErrorCode ierr; 502ca3d3a14SMatthew G. Knepley 503ca3d3a14SMatthew G. Knepley PetscFunctionBeginHot; 50492fd8e1eSJed Brown ierr = DMGetLocalSection(dm, &s);CHKERRQ(ierr); 50592fd8e1eSJed Brown ierr = DMGetLocalSection(tdm, &ts);CHKERRQ(ierr); 506ca3d3a14SMatthew G. Knepley ierr = PetscSectionGetFieldDof(s, pf, f, &fpdof);CHKERRQ(ierr); 507ca3d3a14SMatthew G. Knepley ierr = PetscSectionGetFieldDof(s, pg, g, &gpdof);CHKERRQ(ierr); 508ca3d3a14SMatthew G. Knepley ierr = PetscSectionGetFieldDof(ts, pf, f, &fdof);CHKERRQ(ierr); 509ca3d3a14SMatthew G. Knepley ierr = PetscSectionGetFieldDof(ts, pg, g, &gdof);CHKERRQ(ierr); 510ca3d3a14SMatthew G. Knepley ierr = VecGetArrayRead(tv, &ta);CHKERRQ(ierr); 511ca3d3a14SMatthew G. Knepley ierr = DMPlexPointLocalFieldRead(tdm, pf, f, ta, (void *) &tvaf);CHKERRQ(ierr); 512ca3d3a14SMatthew G. Knepley ierr = DMPlexPointLocalFieldRead(tdm, pg, g, ta, (void *) &tvag);CHKERRQ(ierr); 513ca3d3a14SMatthew G. Knepley if (l2g) { 514ca3d3a14SMatthew G. Knepley switch (fdof) { 515ca3d3a14SMatthew G. Knepley case 4: DMPlex_MatMult2D_Internal(tvaf, gpdof, lda, a, a);break; 516ca3d3a14SMatthew G. Knepley case 9: DMPlex_MatMult3D_Internal(tvaf, gpdof, lda, a, a);break; 517ca3d3a14SMatthew G. Knepley } 518ca3d3a14SMatthew G. Knepley switch (gdof) { 519ca3d3a14SMatthew G. Knepley case 4: DMPlex_MatMultTransposeLeft2D_Internal(tvag, fpdof, lda, a, a);break; 520ca3d3a14SMatthew G. Knepley case 9: DMPlex_MatMultTransposeLeft3D_Internal(tvag, fpdof, lda, a, a);break; 521ca3d3a14SMatthew G. Knepley } 522ca3d3a14SMatthew G. Knepley } else { 523ca3d3a14SMatthew G. Knepley switch (fdof) { 524ca3d3a14SMatthew G. Knepley case 4: DMPlex_MatMultTranspose2D_Internal(tvaf, gpdof, lda, a, a);break; 525ca3d3a14SMatthew G. Knepley case 9: DMPlex_MatMultTranspose3D_Internal(tvaf, gpdof, lda, a, a);break; 526ca3d3a14SMatthew G. Knepley } 527ca3d3a14SMatthew G. Knepley switch (gdof) { 528ca3d3a14SMatthew G. Knepley case 4: DMPlex_MatMultLeft2D_Internal(tvag, fpdof, lda, a, a);break; 529ca3d3a14SMatthew G. Knepley case 9: DMPlex_MatMultLeft3D_Internal(tvag, fpdof, lda, a, a);break; 530ca3d3a14SMatthew G. Knepley } 531ca3d3a14SMatthew G. Knepley } 532ca3d3a14SMatthew G. Knepley ierr = VecRestoreArrayRead(tv, &ta);CHKERRQ(ierr); 533ca3d3a14SMatthew G. Knepley PetscFunctionReturn(0); 534ca3d3a14SMatthew G. Knepley } 535ca3d3a14SMatthew G. Knepley 536ca3d3a14SMatthew G. Knepley PetscErrorCode DMPlexBasisTransformPoint_Internal(DM dm, DM tdm, Vec tv, PetscInt p, PetscBool fieldActive[], PetscBool l2g, PetscScalar *a) 537ca3d3a14SMatthew G. Knepley { 538ca3d3a14SMatthew G. Knepley PetscSection s; 539ca3d3a14SMatthew G. Knepley PetscSection clSection; 540ca3d3a14SMatthew G. Knepley IS clPoints; 541ca3d3a14SMatthew G. Knepley const PetscInt *clp; 542ca3d3a14SMatthew G. Knepley PetscInt *points = NULL; 543ca3d3a14SMatthew G. Knepley PetscInt Nf, f, Np, cp, dof, d = 0; 544ca3d3a14SMatthew G. Knepley PetscErrorCode ierr; 545ca3d3a14SMatthew G. Knepley 546ca3d3a14SMatthew G. Knepley PetscFunctionBegin; 54792fd8e1eSJed Brown ierr = DMGetLocalSection(dm, &s);CHKERRQ(ierr); 548ca3d3a14SMatthew G. Knepley ierr = PetscSectionGetNumFields(s, &Nf);CHKERRQ(ierr); 549ca3d3a14SMatthew G. Knepley ierr = DMPlexGetCompressedClosure(dm, s, p, &Np, &points, &clSection, &clPoints, &clp);CHKERRQ(ierr); 550ca3d3a14SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 551ca3d3a14SMatthew G. Knepley for (cp = 0; cp < Np*2; cp += 2) { 552ca3d3a14SMatthew G. Knepley ierr = PetscSectionGetFieldDof(s, points[cp], f, &dof);CHKERRQ(ierr); 553ca3d3a14SMatthew G. Knepley if (!dof) continue; 554ca3d3a14SMatthew G. Knepley if (fieldActive[f]) {ierr = DMPlexBasisTransformField_Internal(dm, tdm, tv, points[cp], f, l2g, &a[d]);CHKERRQ(ierr);} 555ca3d3a14SMatthew G. Knepley d += dof; 556ca3d3a14SMatthew G. Knepley } 557ca3d3a14SMatthew G. Knepley } 558ca3d3a14SMatthew G. Knepley ierr = DMPlexRestoreCompressedClosure(dm, s, p, &Np, &points, &clSection, &clPoints, &clp);CHKERRQ(ierr); 559ca3d3a14SMatthew G. Knepley PetscFunctionReturn(0); 560ca3d3a14SMatthew G. Knepley } 561ca3d3a14SMatthew G. Knepley 562ca3d3a14SMatthew G. Knepley PetscErrorCode DMPlexBasisTransformPointTensor_Internal(DM dm, DM tdm, Vec tv, PetscInt p, PetscBool l2g, PetscInt lda, PetscScalar *a) 563ca3d3a14SMatthew G. Knepley { 564ca3d3a14SMatthew G. Knepley PetscSection s; 565ca3d3a14SMatthew G. Knepley PetscSection clSection; 566ca3d3a14SMatthew G. Knepley IS clPoints; 567ca3d3a14SMatthew G. Knepley const PetscInt *clp; 568ca3d3a14SMatthew G. Knepley PetscInt *points = NULL; 5698bdb3c71SMatthew G. Knepley PetscInt Nf, f, g, Np, cpf, cpg, fdof, gdof, r, c = 0; 570ca3d3a14SMatthew G. Knepley PetscErrorCode ierr; 571ca3d3a14SMatthew G. Knepley 572ca3d3a14SMatthew G. Knepley PetscFunctionBegin; 57392fd8e1eSJed Brown ierr = DMGetLocalSection(dm, &s);CHKERRQ(ierr); 574ca3d3a14SMatthew G. Knepley ierr = PetscSectionGetNumFields(s, &Nf);CHKERRQ(ierr); 575ca3d3a14SMatthew G. Knepley ierr = DMPlexGetCompressedClosure(dm, s, p, &Np, &points, &clSection, &clPoints, &clp);CHKERRQ(ierr); 576ca3d3a14SMatthew G. Knepley for (f = 0, r = 0; f < Nf; ++f) { 577ca3d3a14SMatthew G. Knepley for (cpf = 0; cpf < Np*2; cpf += 2) { 578ca3d3a14SMatthew G. Knepley ierr = PetscSectionGetFieldDof(s, points[cpf], f, &fdof);CHKERRQ(ierr); 579ca3d3a14SMatthew G. Knepley for (g = 0, c = 0; g < Nf; ++g) { 580ca3d3a14SMatthew G. Knepley for (cpg = 0; cpg < Np*2; cpg += 2) { 581ca3d3a14SMatthew G. Knepley ierr = PetscSectionGetFieldDof(s, points[cpg], g, &gdof);CHKERRQ(ierr); 582ca3d3a14SMatthew G. Knepley ierr = DMPlexBasisTransformFieldTensor_Internal(dm, tdm, tv, points[cpf], f, points[cpg], g, l2g, lda, &a[r*lda+c]);CHKERRQ(ierr); 583ca3d3a14SMatthew G. Knepley c += gdof; 584ca3d3a14SMatthew G. Knepley } 585ca3d3a14SMatthew G. Knepley } 586ca3d3a14SMatthew G. Knepley if (c != lda) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid number of columns %D should be %D", c, lda); 587ca3d3a14SMatthew G. Knepley r += fdof; 588ca3d3a14SMatthew G. Knepley } 589ca3d3a14SMatthew G. Knepley } 590ca3d3a14SMatthew G. Knepley if (r != lda) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid number of rows %D should be %D", c, lda); 591ca3d3a14SMatthew G. Knepley ierr = DMPlexRestoreCompressedClosure(dm, s, p, &Np, &points, &clSection, &clPoints, &clp);CHKERRQ(ierr); 592ca3d3a14SMatthew G. Knepley PetscFunctionReturn(0); 593ca3d3a14SMatthew G. Knepley } 594ca3d3a14SMatthew G. Knepley 595ca3d3a14SMatthew G. Knepley static PetscErrorCode DMPlexBasisTransform_Internal(DM dm, Vec lv, PetscBool l2g) 596ca3d3a14SMatthew G. Knepley { 597ca3d3a14SMatthew G. Knepley DM tdm; 598ca3d3a14SMatthew G. Knepley Vec tv; 599ca3d3a14SMatthew G. Knepley PetscSection ts, s; 600ca3d3a14SMatthew G. Knepley const PetscScalar *ta; 601ca3d3a14SMatthew G. Knepley PetscScalar *a, *va; 602ca3d3a14SMatthew G. Knepley PetscInt pStart, pEnd, p, Nf, f; 603ca3d3a14SMatthew G. Knepley PetscErrorCode ierr; 604ca3d3a14SMatthew G. Knepley 605ca3d3a14SMatthew G. Knepley PetscFunctionBegin; 606ca3d3a14SMatthew G. Knepley ierr = DMGetBasisTransformDM_Internal(dm, &tdm);CHKERRQ(ierr); 607ca3d3a14SMatthew G. Knepley ierr = DMGetBasisTransformVec_Internal(dm, &tv);CHKERRQ(ierr); 60892fd8e1eSJed Brown ierr = DMGetLocalSection(tdm, &ts);CHKERRQ(ierr); 60992fd8e1eSJed Brown ierr = DMGetLocalSection(dm, &s);CHKERRQ(ierr); 610ca3d3a14SMatthew G. Knepley ierr = PetscSectionGetChart(s, &pStart, &pEnd);CHKERRQ(ierr); 611ca3d3a14SMatthew G. Knepley ierr = PetscSectionGetNumFields(s, &Nf);CHKERRQ(ierr); 612ca3d3a14SMatthew G. Knepley ierr = VecGetArray(lv, &a);CHKERRQ(ierr); 613ca3d3a14SMatthew G. Knepley ierr = VecGetArrayRead(tv, &ta);CHKERRQ(ierr); 614ca3d3a14SMatthew G. Knepley for (p = pStart; p < pEnd; ++p) { 615ca3d3a14SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 616ca3d3a14SMatthew G. Knepley ierr = DMPlexPointLocalFieldRef(dm, p, f, a, (void *) &va);CHKERRQ(ierr); 617ca3d3a14SMatthew G. Knepley ierr = DMPlexBasisTransformField_Internal(dm, tdm, tv, p, f, l2g, va);CHKERRQ(ierr); 618ca3d3a14SMatthew G. Knepley } 619ca3d3a14SMatthew G. Knepley } 620ca3d3a14SMatthew G. Knepley ierr = VecRestoreArray(lv, &a);CHKERRQ(ierr); 621ca3d3a14SMatthew G. Knepley ierr = VecRestoreArrayRead(tv, &ta);CHKERRQ(ierr); 622ca3d3a14SMatthew G. Knepley PetscFunctionReturn(0); 623ca3d3a14SMatthew G. Knepley } 624ca3d3a14SMatthew G. Knepley 625ca3d3a14SMatthew G. Knepley /*@ 626ca3d3a14SMatthew G. Knepley DMPlexGlobalToLocalBasis - Transform the values in the given local vector from the global basis to the local basis 627ca3d3a14SMatthew G. Knepley 628ca3d3a14SMatthew G. Knepley Input Parameters: 629ca3d3a14SMatthew G. Knepley + dm - The DM 630ca3d3a14SMatthew G. Knepley - lv - A local vector with values in the global basis 631ca3d3a14SMatthew G. Knepley 632ca3d3a14SMatthew G. Knepley Output Parameters: 633ca3d3a14SMatthew G. Knepley . lv - A local vector with values in the local basis 634ca3d3a14SMatthew G. Knepley 635c0f8e1fdSMatthew G. Knepley Note: This method is only intended to be called inside DMGlobalToLocal(). It is unlikely that a user will have a local vector full of coefficients for the global basis unless they are reimplementing GlobalToLocal. 636c0f8e1fdSMatthew G. Knepley 637ca3d3a14SMatthew G. Knepley Level: developer 638ca3d3a14SMatthew G. Knepley 63992fd8e1eSJed Brown .seealso: DMPlexLocalToGlobalBasis(), DMGetLocalSection() 640ca3d3a14SMatthew G. Knepley @*/ 641ca3d3a14SMatthew G. Knepley PetscErrorCode DMPlexGlobalToLocalBasis(DM dm, Vec lv) 642ca3d3a14SMatthew G. Knepley { 643ca3d3a14SMatthew G. Knepley PetscErrorCode ierr; 644ca3d3a14SMatthew G. Knepley 645ca3d3a14SMatthew G. Knepley PetscFunctionBegin; 646ca3d3a14SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 647ca3d3a14SMatthew G. Knepley PetscValidHeaderSpecific(lv, VEC_CLASSID, 2); 648ca3d3a14SMatthew G. Knepley ierr = DMPlexBasisTransform_Internal(dm, lv, PETSC_FALSE);CHKERRQ(ierr); 649ca3d3a14SMatthew G. Knepley PetscFunctionReturn(0); 650ca3d3a14SMatthew G. Knepley } 651ca3d3a14SMatthew G. Knepley 652ca3d3a14SMatthew G. Knepley /*@ 653ca3d3a14SMatthew G. Knepley DMPlexLocalToGlobalBasis - Transform the values in the given local vector from the local basis to the global basis 654ca3d3a14SMatthew G. Knepley 655ca3d3a14SMatthew G. Knepley Input Parameters: 656ca3d3a14SMatthew G. Knepley + dm - The DM 657ca3d3a14SMatthew G. Knepley - lv - A local vector with values in the local basis 658ca3d3a14SMatthew G. Knepley 659ca3d3a14SMatthew G. Knepley Output Parameters: 660ca3d3a14SMatthew G. Knepley . lv - A local vector with values in the global basis 661ca3d3a14SMatthew G. Knepley 662c0f8e1fdSMatthew G. Knepley Note: This method is only intended to be called inside DMGlobalToLocal(). It is unlikely that a user would want a local vector full of coefficients for the global basis unless they are reimplementing GlobalToLocal. 663c0f8e1fdSMatthew G. Knepley 664ca3d3a14SMatthew G. Knepley Level: developer 665ca3d3a14SMatthew G. Knepley 66692fd8e1eSJed Brown .seealso: DMPlexGlobalToLocalBasis(), DMGetLocalSection() 667ca3d3a14SMatthew G. Knepley @*/ 668ca3d3a14SMatthew G. Knepley PetscErrorCode DMPlexLocalToGlobalBasis(DM dm, Vec lv) 669ca3d3a14SMatthew G. Knepley { 670ca3d3a14SMatthew G. Knepley PetscErrorCode ierr; 671ca3d3a14SMatthew G. Knepley 672ca3d3a14SMatthew G. Knepley PetscFunctionBegin; 673ca3d3a14SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 674ca3d3a14SMatthew G. Knepley PetscValidHeaderSpecific(lv, VEC_CLASSID, 2); 675ca3d3a14SMatthew G. Knepley ierr = DMPlexBasisTransform_Internal(dm, lv, PETSC_TRUE);CHKERRQ(ierr); 676ca3d3a14SMatthew G. Knepley PetscFunctionReturn(0); 677ca3d3a14SMatthew G. Knepley } 678ca3d3a14SMatthew G. Knepley 679ca3d3a14SMatthew G. Knepley /*@ 680ca3d3a14SMatthew G. Knepley DMPlexCreateBasisRotation - Create an internal transformation from the global basis, used to specify boundary conditions 681ca3d3a14SMatthew G. Knepley and global solutions, to a local basis, appropriate for discretization integrals and assembly. 682ca3d3a14SMatthew G. Knepley 683ca3d3a14SMatthew G. Knepley Input Parameters: 684ca3d3a14SMatthew G. Knepley + dm - The DM 685ca3d3a14SMatthew G. Knepley . alpha - The first Euler angle, and in 2D the only one 686ca3d3a14SMatthew G. Knepley . beta - The second Euler angle 687f0fc11ceSJed Brown - gamma - The third Euler angle 688ca3d3a14SMatthew G. Knepley 689ca3d3a14SMatthew G. Knepley Note: Following https://en.wikipedia.org/wiki/Euler_angles, we will specify Euler angles by extrinsic rotations, meaning that 690ca3d3a14SMatthew G. Knepley we rotate with respect to a fixed initial coordinate system, the local basis (x-y-z). The global basis (X-Y-Z) is reached as follows: 691ca3d3a14SMatthew G. Knepley $ The XYZ system rotates about the z axis by alpha. The X axis is now at angle alpha with respect to the x axis. 692ca3d3a14SMatthew G. Knepley $ The XYZ system rotates again about the x axis by beta. The Z axis is now at angle beta with respect to the z axis. 693ca3d3a14SMatthew G. Knepley $ The XYZ system rotates a third time about the z axis by gamma. 694ca3d3a14SMatthew G. Knepley 695ca3d3a14SMatthew G. Knepley Level: developer 696ca3d3a14SMatthew G. Knepley 697ca3d3a14SMatthew G. Knepley .seealso: DMPlexGlobalToLocalBasis(), DMPlexLocalToGlobalBasis() 698ca3d3a14SMatthew G. Knepley @*/ 699ca3d3a14SMatthew G. Knepley PetscErrorCode DMPlexCreateBasisRotation(DM dm, PetscReal alpha, PetscReal beta, PetscReal gamma) 700ca3d3a14SMatthew G. Knepley { 701ca3d3a14SMatthew G. Knepley RotCtx *rc; 702ca3d3a14SMatthew G. Knepley PetscInt cdim; 703ca3d3a14SMatthew G. Knepley PetscErrorCode ierr; 704ca3d3a14SMatthew G. Knepley 705ca3d3a14SMatthew G. Knepley ierr = DMGetCoordinateDim(dm, &cdim);CHKERRQ(ierr); 706ca3d3a14SMatthew G. Knepley ierr = PetscMalloc1(1, &rc);CHKERRQ(ierr); 707ca3d3a14SMatthew G. Knepley dm->transformCtx = rc; 708ca3d3a14SMatthew G. Knepley dm->transformSetUp = DMPlexBasisTransformSetUp_Rotation_Internal; 709ca3d3a14SMatthew G. Knepley dm->transformDestroy = DMPlexBasisTransformDestroy_Rotation_Internal; 710ca3d3a14SMatthew G. Knepley dm->transformGetMatrix = DMPlexBasisTransformGetMatrix_Rotation_Internal; 711ca3d3a14SMatthew G. Knepley rc->dim = cdim; 712ca3d3a14SMatthew G. Knepley rc->alpha = alpha; 713ca3d3a14SMatthew G. Knepley rc->beta = beta; 714ca3d3a14SMatthew G. Knepley rc->gamma = gamma; 715ca3d3a14SMatthew G. Knepley ierr = (*dm->transformSetUp)(dm, dm->transformCtx);CHKERRQ(ierr); 716ca3d3a14SMatthew G. Knepley ierr = DMConstructBasisTransform_Internal(dm);CHKERRQ(ierr); 717ca3d3a14SMatthew G. Knepley PetscFunctionReturn(0); 718ca3d3a14SMatthew G. Knepley } 719ca3d3a14SMatthew G. Knepley 720b278463cSMatthew G. Knepley /*@C 721b278463cSMatthew G. Knepley DMPlexInsertBoundaryValuesEssential - Insert boundary values into a local vector 722b278463cSMatthew G. Knepley 723b278463cSMatthew G. Knepley Input Parameters: 724b278463cSMatthew G. Knepley + dm - The DM, with a PetscDS that matches the problem being constrained 725b278463cSMatthew G. Knepley . time - The time 726b278463cSMatthew G. Knepley . field - The field to constrain 7271c531cf8SMatthew G. Knepley . Nc - The number of constrained field components, or 0 for all components 7281c531cf8SMatthew G. Knepley . comps - An array of constrained component numbers, or NULL for all components 729b278463cSMatthew G. Knepley . label - The DMLabel defining constrained points 730b278463cSMatthew G. Knepley . numids - The number of DMLabel ids for constrained points 731b278463cSMatthew G. Knepley . ids - An array of ids for constrained points 732b278463cSMatthew G. Knepley . func - A pointwise function giving boundary values 733b278463cSMatthew G. Knepley - ctx - An optional user context for bcFunc 734b278463cSMatthew G. Knepley 735b278463cSMatthew G. Knepley Output Parameter: 736b278463cSMatthew G. Knepley . locX - A local vector to receives the boundary values 737b278463cSMatthew G. Knepley 738b278463cSMatthew G. Knepley Level: developer 739b278463cSMatthew G. Knepley 740b278463cSMatthew G. Knepley .seealso: DMPlexInsertBoundaryValuesEssentialField(), DMAddBoundary() 741b278463cSMatthew G. Knepley @*/ 7421c531cf8SMatthew G. Knepley PetscErrorCode DMPlexInsertBoundaryValuesEssential(DM dm, PetscReal time, PetscInt field, PetscInt Nc, const PetscInt comps[], DMLabel label, PetscInt numids, const PetscInt ids[], PetscErrorCode (*func)(PetscInt, PetscReal, const PetscReal[], PetscInt, PetscScalar *, void *), void *ctx, Vec locX) 74355f2e967SMatthew G. Knepley { 7440163fd50SMatthew G. Knepley PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal x[], PetscInt, PetscScalar *u, void *ctx); 74555f2e967SMatthew G. Knepley void **ctxs; 746d7ddef95SMatthew G. Knepley PetscInt numFields; 747d7ddef95SMatthew G. Knepley PetscErrorCode ierr; 748d7ddef95SMatthew G. Knepley 749d7ddef95SMatthew G. Knepley PetscFunctionBegin; 750d7ddef95SMatthew G. Knepley ierr = DMGetNumFields(dm, &numFields);CHKERRQ(ierr); 751d7ddef95SMatthew G. Knepley ierr = PetscCalloc2(numFields,&funcs,numFields,&ctxs);CHKERRQ(ierr); 752d7ddef95SMatthew G. Knepley funcs[field] = func; 753d7ddef95SMatthew G. Knepley ctxs[field] = ctx; 7541c531cf8SMatthew G. Knepley ierr = DMProjectFunctionLabelLocal(dm, time, label, numids, ids, Nc, comps, funcs, ctxs, INSERT_BC_VALUES, locX);CHKERRQ(ierr); 755d7ddef95SMatthew G. Knepley ierr = PetscFree2(funcs,ctxs);CHKERRQ(ierr); 756d7ddef95SMatthew G. Knepley PetscFunctionReturn(0); 757d7ddef95SMatthew G. Knepley } 758d7ddef95SMatthew G. Knepley 759b278463cSMatthew G. Knepley /*@C 760b278463cSMatthew G. Knepley DMPlexInsertBoundaryValuesEssentialField - Insert boundary values into a local vector 761b278463cSMatthew G. Knepley 762b278463cSMatthew G. Knepley Input Parameters: 763b278463cSMatthew G. Knepley + dm - The DM, with a PetscDS that matches the problem being constrained 764b278463cSMatthew G. Knepley . time - The time 765b278463cSMatthew G. Knepley . locU - A local vector with the input solution values 766b278463cSMatthew G. Knepley . field - The field to constrain 7671c531cf8SMatthew G. Knepley . Nc - The number of constrained field components, or 0 for all components 7681c531cf8SMatthew G. Knepley . comps - An array of constrained component numbers, or NULL for all components 769b278463cSMatthew G. Knepley . label - The DMLabel defining constrained points 770b278463cSMatthew G. Knepley . numids - The number of DMLabel ids for constrained points 771b278463cSMatthew G. Knepley . ids - An array of ids for constrained points 772b278463cSMatthew G. Knepley . func - A pointwise function giving boundary values 773b278463cSMatthew G. Knepley - ctx - An optional user context for bcFunc 774b278463cSMatthew G. Knepley 775b278463cSMatthew G. Knepley Output Parameter: 776b278463cSMatthew G. Knepley . locX - A local vector to receives the boundary values 777b278463cSMatthew G. Knepley 778b278463cSMatthew G. Knepley Level: developer 779b278463cSMatthew G. Knepley 780b278463cSMatthew G. Knepley .seealso: DMPlexInsertBoundaryValuesEssential(), DMAddBoundary() 781b278463cSMatthew G. Knepley @*/ 7821c531cf8SMatthew G. Knepley PetscErrorCode DMPlexInsertBoundaryValuesEssentialField(DM dm, PetscReal time, Vec locU, PetscInt field, PetscInt Nc, const PetscInt comps[], DMLabel label, PetscInt numids, const PetscInt ids[], 783c60e475cSMatthew G. Knepley void (*func)(PetscInt, PetscInt, PetscInt, 784c60e475cSMatthew G. Knepley const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], 785c60e475cSMatthew G. Knepley const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], 78697b6e6e8SMatthew G. Knepley PetscReal, const PetscReal[], PetscInt, const PetscScalar[], 787b278463cSMatthew G. Knepley PetscScalar[]), 788b278463cSMatthew G. Knepley void *ctx, Vec locX) 789c60e475cSMatthew G. Knepley { 790c60e475cSMatthew G. Knepley void (**funcs)(PetscInt, PetscInt, PetscInt, 791c60e475cSMatthew G. Knepley const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], 792c60e475cSMatthew G. Knepley const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], 79397b6e6e8SMatthew G. Knepley PetscReal, const PetscReal[], PetscInt, const PetscScalar[], PetscScalar[]); 794c60e475cSMatthew G. Knepley void **ctxs; 795c60e475cSMatthew G. Knepley PetscInt numFields; 796c60e475cSMatthew G. Knepley PetscErrorCode ierr; 797c60e475cSMatthew G. Knepley 798c60e475cSMatthew G. Knepley PetscFunctionBegin; 799c60e475cSMatthew G. Knepley ierr = DMGetNumFields(dm, &numFields);CHKERRQ(ierr); 800c60e475cSMatthew G. Knepley ierr = PetscCalloc2(numFields,&funcs,numFields,&ctxs);CHKERRQ(ierr); 801c60e475cSMatthew G. Knepley funcs[field] = func; 802c60e475cSMatthew G. Knepley ctxs[field] = ctx; 8031c531cf8SMatthew G. Knepley ierr = DMProjectFieldLabelLocal(dm, time, label, numids, ids, Nc, comps, locU, funcs, INSERT_BC_VALUES, locX);CHKERRQ(ierr); 804c60e475cSMatthew G. Knepley ierr = PetscFree2(funcs,ctxs);CHKERRQ(ierr); 805c60e475cSMatthew G. Knepley PetscFunctionReturn(0); 806c60e475cSMatthew G. Knepley } 807c60e475cSMatthew G. Knepley 808b278463cSMatthew G. Knepley /*@C 809b278463cSMatthew G. Knepley DMPlexInsertBoundaryValuesRiemann - Insert boundary values into a local vector 810b278463cSMatthew G. Knepley 811b278463cSMatthew G. Knepley Input Parameters: 812b278463cSMatthew G. Knepley + dm - The DM, with a PetscDS that matches the problem being constrained 813b278463cSMatthew G. Knepley . time - The time 814b278463cSMatthew G. Knepley . faceGeometry - A vector with the FVM face geometry information 815b278463cSMatthew G. Knepley . cellGeometry - A vector with the FVM cell geometry information 816b278463cSMatthew G. Knepley . Grad - A vector with the FVM cell gradient information 817b278463cSMatthew G. Knepley . field - The field to constrain 8181c531cf8SMatthew G. Knepley . Nc - The number of constrained field components, or 0 for all components 8191c531cf8SMatthew G. Knepley . comps - An array of constrained component numbers, or NULL for all components 820b278463cSMatthew G. Knepley . label - The DMLabel defining constrained points 821b278463cSMatthew G. Knepley . numids - The number of DMLabel ids for constrained points 822b278463cSMatthew G. Knepley . ids - An array of ids for constrained points 823b278463cSMatthew G. Knepley . func - A pointwise function giving boundary values 824b278463cSMatthew G. Knepley - ctx - An optional user context for bcFunc 825b278463cSMatthew G. Knepley 826b278463cSMatthew G. Knepley Output Parameter: 827b278463cSMatthew G. Knepley . locX - A local vector to receives the boundary values 828b278463cSMatthew G. Knepley 829b278463cSMatthew G. Knepley Note: This implementation currently ignores the numcomps/comps argument from DMAddBoundary() 830b278463cSMatthew G. Knepley 831b278463cSMatthew G. Knepley Level: developer 832b278463cSMatthew G. Knepley 833b278463cSMatthew G. Knepley .seealso: DMPlexInsertBoundaryValuesEssential(), DMPlexInsertBoundaryValuesEssentialField(), DMAddBoundary() 834b278463cSMatthew G. Knepley @*/ 8351c531cf8SMatthew G. Knepley PetscErrorCode DMPlexInsertBoundaryValuesRiemann(DM dm, PetscReal time, Vec faceGeometry, Vec cellGeometry, Vec Grad, PetscInt field, PetscInt Nc, const PetscInt comps[], DMLabel label, PetscInt numids, const PetscInt ids[], 836b278463cSMatthew G. Knepley PetscErrorCode (*func)(PetscReal,const PetscReal*,const PetscReal*,const PetscScalar*,PetscScalar*,void*), void *ctx, Vec locX) 837d7ddef95SMatthew G. Knepley { 83861f58d28SMatthew G. Knepley PetscDS prob; 839da97024aSMatthew G. Knepley PetscSF sf; 840d7ddef95SMatthew G. Knepley DM dmFace, dmCell, dmGrad; 84120369375SToby Isaac const PetscScalar *facegeom, *cellgeom = NULL, *grad; 842da97024aSMatthew G. Knepley const PetscInt *leaves; 843d7ddef95SMatthew G. Knepley PetscScalar *x, *fx; 844520b3818SMatthew G. Knepley PetscInt dim, nleaves, loc, fStart, fEnd, pdim, i; 845e735a8a9SMatthew G. Knepley PetscErrorCode ierr, ierru = 0; 846d7ddef95SMatthew G. Knepley 847d7ddef95SMatthew G. Knepley PetscFunctionBegin; 848da97024aSMatthew G. Knepley ierr = DMGetPointSF(dm, &sf);CHKERRQ(ierr); 849da97024aSMatthew G. Knepley ierr = PetscSFGetGraph(sf, NULL, &nleaves, &leaves, NULL);CHKERRQ(ierr); 850da97024aSMatthew G. Knepley nleaves = PetscMax(0, nleaves); 851d7ddef95SMatthew G. Knepley ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr); 852d7ddef95SMatthew G. Knepley ierr = DMPlexGetHeightStratum(dm, 1, &fStart, &fEnd);CHKERRQ(ierr); 85361f58d28SMatthew G. Knepley ierr = DMGetDS(dm, &prob);CHKERRQ(ierr); 854d7ddef95SMatthew G. Knepley ierr = VecGetDM(faceGeometry, &dmFace);CHKERRQ(ierr); 855d7ddef95SMatthew G. Knepley ierr = VecGetArrayRead(faceGeometry, &facegeom);CHKERRQ(ierr); 85620369375SToby Isaac if (cellGeometry) { 857d7ddef95SMatthew G. Knepley ierr = VecGetDM(cellGeometry, &dmCell);CHKERRQ(ierr); 858d7ddef95SMatthew G. Knepley ierr = VecGetArrayRead(cellGeometry, &cellgeom);CHKERRQ(ierr); 85920369375SToby Isaac } 860d7ddef95SMatthew G. Knepley if (Grad) { 861c0a6632aSMatthew G. Knepley PetscFV fv; 862c0a6632aSMatthew G. Knepley 863c0a6632aSMatthew G. Knepley ierr = PetscDSGetDiscretization(prob, field, (PetscObject *) &fv);CHKERRQ(ierr); 864d7ddef95SMatthew G. Knepley ierr = VecGetDM(Grad, &dmGrad);CHKERRQ(ierr); 865d7ddef95SMatthew G. Knepley ierr = VecGetArrayRead(Grad, &grad);CHKERRQ(ierr); 866d7ddef95SMatthew G. Knepley ierr = PetscFVGetNumComponents(fv, &pdim);CHKERRQ(ierr); 86769291d52SBarry Smith ierr = DMGetWorkArray(dm, pdim, MPIU_SCALAR, &fx);CHKERRQ(ierr); 868d7ddef95SMatthew G. Knepley } 869d7ddef95SMatthew G. Knepley ierr = VecGetArray(locX, &x);CHKERRQ(ierr); 870d7ddef95SMatthew G. Knepley for (i = 0; i < numids; ++i) { 871d7ddef95SMatthew G. Knepley IS faceIS; 872d7ddef95SMatthew G. Knepley const PetscInt *faces; 873d7ddef95SMatthew G. Knepley PetscInt numFaces, f; 874d7ddef95SMatthew G. Knepley 875d7ddef95SMatthew G. Knepley ierr = DMLabelGetStratumIS(label, ids[i], &faceIS);CHKERRQ(ierr); 876d7ddef95SMatthew G. Knepley if (!faceIS) continue; /* No points with that id on this process */ 877d7ddef95SMatthew G. Knepley ierr = ISGetLocalSize(faceIS, &numFaces);CHKERRQ(ierr); 878d7ddef95SMatthew G. Knepley ierr = ISGetIndices(faceIS, &faces);CHKERRQ(ierr); 879d7ddef95SMatthew G. Knepley for (f = 0; f < numFaces; ++f) { 880d7ddef95SMatthew G. Knepley const PetscInt face = faces[f], *cells; 881640bce14SSatish Balay PetscFVFaceGeom *fg; 882d7ddef95SMatthew G. Knepley 883d7ddef95SMatthew G. Knepley if ((face < fStart) || (face >= fEnd)) continue; /* Refinement adds non-faces to labels */ 884da97024aSMatthew G. Knepley ierr = PetscFindInt(face, nleaves, (PetscInt *) leaves, &loc);CHKERRQ(ierr); 885da97024aSMatthew G. Knepley if (loc >= 0) continue; 886d7ddef95SMatthew G. Knepley ierr = DMPlexPointLocalRead(dmFace, face, facegeom, &fg);CHKERRQ(ierr); 887d7ddef95SMatthew G. Knepley ierr = DMPlexGetSupport(dm, face, &cells);CHKERRQ(ierr); 888d7ddef95SMatthew G. Knepley if (Grad) { 889640bce14SSatish Balay PetscFVCellGeom *cg; 890640bce14SSatish Balay PetscScalar *cx, *cgrad; 891d7ddef95SMatthew G. Knepley PetscScalar *xG; 892d7ddef95SMatthew G. Knepley PetscReal dx[3]; 893d7ddef95SMatthew G. Knepley PetscInt d; 894d7ddef95SMatthew G. Knepley 895d7ddef95SMatthew G. Knepley ierr = DMPlexPointLocalRead(dmCell, cells[0], cellgeom, &cg);CHKERRQ(ierr); 896d7ddef95SMatthew G. Knepley ierr = DMPlexPointLocalRead(dm, cells[0], x, &cx);CHKERRQ(ierr); 897d7ddef95SMatthew G. Knepley ierr = DMPlexPointLocalRead(dmGrad, cells[0], grad, &cgrad);CHKERRQ(ierr); 898520b3818SMatthew G. Knepley ierr = DMPlexPointLocalFieldRef(dm, cells[1], field, x, &xG);CHKERRQ(ierr); 899d7ddef95SMatthew G. Knepley DMPlex_WaxpyD_Internal(dim, -1, cg->centroid, fg->centroid, dx); 900d7ddef95SMatthew G. Knepley for (d = 0; d < pdim; ++d) fx[d] = cx[d] + DMPlex_DotD_Internal(dim, &cgrad[d*dim], dx); 901e735a8a9SMatthew G. Knepley ierru = (*func)(time, fg->centroid, fg->normal, fx, xG, ctx); 902e735a8a9SMatthew G. Knepley if (ierru) { 903e735a8a9SMatthew G. Knepley ierr = ISRestoreIndices(faceIS, &faces);CHKERRQ(ierr); 904e735a8a9SMatthew G. Knepley ierr = ISDestroy(&faceIS);CHKERRQ(ierr); 905e735a8a9SMatthew G. Knepley goto cleanup; 906e735a8a9SMatthew G. Knepley } 907d7ddef95SMatthew G. Knepley } else { 908640bce14SSatish Balay PetscScalar *xI; 909d7ddef95SMatthew G. Knepley PetscScalar *xG; 910d7ddef95SMatthew G. Knepley 911d7ddef95SMatthew G. Knepley ierr = DMPlexPointLocalRead(dm, cells[0], x, &xI);CHKERRQ(ierr); 912520b3818SMatthew G. Knepley ierr = DMPlexPointLocalFieldRef(dm, cells[1], field, x, &xG);CHKERRQ(ierr); 913e735a8a9SMatthew G. Knepley ierru = (*func)(time, fg->centroid, fg->normal, xI, xG, ctx); 914e735a8a9SMatthew G. Knepley if (ierru) { 915e735a8a9SMatthew G. Knepley ierr = ISRestoreIndices(faceIS, &faces);CHKERRQ(ierr); 916e735a8a9SMatthew G. Knepley ierr = ISDestroy(&faceIS);CHKERRQ(ierr); 917e735a8a9SMatthew G. Knepley goto cleanup; 918e735a8a9SMatthew G. Knepley } 919d7ddef95SMatthew G. Knepley } 920d7ddef95SMatthew G. Knepley } 921d7ddef95SMatthew G. Knepley ierr = ISRestoreIndices(faceIS, &faces);CHKERRQ(ierr); 922d7ddef95SMatthew G. Knepley ierr = ISDestroy(&faceIS);CHKERRQ(ierr); 923d7ddef95SMatthew G. Knepley } 924e735a8a9SMatthew G. Knepley cleanup: 925d7ddef95SMatthew G. Knepley ierr = VecRestoreArray(locX, &x);CHKERRQ(ierr); 926d7ddef95SMatthew G. Knepley if (Grad) { 92769291d52SBarry Smith ierr = DMRestoreWorkArray(dm, pdim, MPIU_SCALAR, &fx);CHKERRQ(ierr); 928d7ddef95SMatthew G. Knepley ierr = VecRestoreArrayRead(Grad, &grad);CHKERRQ(ierr); 929d7ddef95SMatthew G. Knepley } 930e735a8a9SMatthew G. Knepley if (cellGeometry) {ierr = VecRestoreArrayRead(cellGeometry, &cellgeom);CHKERRQ(ierr);} 931d7ddef95SMatthew G. Knepley ierr = VecRestoreArrayRead(faceGeometry, &facegeom);CHKERRQ(ierr); 932e735a8a9SMatthew G. Knepley CHKERRQ(ierru); 933d7ddef95SMatthew G. Knepley PetscFunctionReturn(0); 934d7ddef95SMatthew G. Knepley } 935d7ddef95SMatthew G. Knepley 936f1d73a7aSMatthew G. Knepley PetscErrorCode DMPlexInsertBoundaryValues_Plex(DM dm, PetscBool insertEssential, Vec locX, PetscReal time, Vec faceGeomFVM, Vec cellGeomFVM, Vec gradFVM) 937d7ddef95SMatthew G. Knepley { 938e5e52638SMatthew G. Knepley PetscDS prob; 939d7ddef95SMatthew G. Knepley PetscInt numBd, b; 94055f2e967SMatthew G. Knepley PetscErrorCode ierr; 94155f2e967SMatthew G. Knepley 94255f2e967SMatthew G. Knepley PetscFunctionBegin; 943e5e52638SMatthew G. Knepley ierr = DMGetDS(dm, &prob);CHKERRQ(ierr); 944e5e52638SMatthew G. Knepley ierr = PetscDSGetNumBoundary(prob, &numBd);CHKERRQ(ierr); 94555f2e967SMatthew G. Knepley for (b = 0; b < numBd; ++b) { 946f971fd6bSMatthew G. Knepley DMBoundaryConditionType type; 947648eda8cSMatthew G. Knepley const char *name, *labelname; 948d7ddef95SMatthew G. Knepley DMLabel label; 9491c531cf8SMatthew G. Knepley PetscInt field, Nc; 9501c531cf8SMatthew G. Knepley const PetscInt *comps; 951d7ddef95SMatthew G. Knepley PetscObject obj; 952d7ddef95SMatthew G. Knepley PetscClassId id; 953a30ec4eaSSatish Balay void (*func)(void); 954d7ddef95SMatthew G. Knepley PetscInt numids; 955d7ddef95SMatthew G. Knepley const PetscInt *ids; 95655f2e967SMatthew G. Knepley void *ctx; 95755f2e967SMatthew G. Knepley 958648eda8cSMatthew G. Knepley ierr = DMGetBoundary(dm, b, &type, &name, &labelname, &field, &Nc, &comps, &func, &numids, &ids, &ctx);CHKERRQ(ierr); 959f971fd6bSMatthew G. Knepley if (insertEssential != (type & DM_BC_ESSENTIAL)) continue; 960c58f1c22SToby Isaac ierr = DMGetLabel(dm, labelname, &label);CHKERRQ(ierr); 961648eda8cSMatthew G. Knepley if (!label) SETERRQ2(PetscObjectComm((PetscObject) dm), PETSC_ERR_ARG_WRONGSTATE, "Label %s for boundary condition %s does not exist in the DM", labelname, name); 96244a7f3ddSMatthew G. Knepley ierr = DMGetField(dm, field, NULL, &obj);CHKERRQ(ierr); 963d7ddef95SMatthew G. Knepley ierr = PetscObjectGetClassId(obj, &id);CHKERRQ(ierr); 964d7ddef95SMatthew G. Knepley if (id == PETSCFE_CLASSID) { 965c60e475cSMatthew G. Knepley switch (type) { 966c60e475cSMatthew G. Knepley /* for FEM, there is no insertion to be done for non-essential boundary conditions */ 967c60e475cSMatthew G. Knepley case DM_BC_ESSENTIAL: 968092e5057SToby Isaac ierr = DMPlexLabelAddCells(dm,label);CHKERRQ(ierr); 9691c531cf8SMatthew G. Knepley ierr = DMPlexInsertBoundaryValuesEssential(dm, time, field, Nc, comps, label, numids, ids, (PetscErrorCode (*)(PetscInt, PetscReal, const PetscReal[], PetscInt, PetscScalar *, void *)) func, ctx, locX);CHKERRQ(ierr); 970092e5057SToby Isaac ierr = DMPlexLabelClearCells(dm,label);CHKERRQ(ierr); 971c60e475cSMatthew G. Knepley break; 972c60e475cSMatthew G. Knepley case DM_BC_ESSENTIAL_FIELD: 973c60e475cSMatthew G. Knepley ierr = DMPlexLabelAddCells(dm,label);CHKERRQ(ierr); 9741c531cf8SMatthew G. Knepley ierr = DMPlexInsertBoundaryValuesEssentialField(dm, time, locX, field, Nc, comps, label, numids, ids, 975b278463cSMatthew G. Knepley (void (*)(PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], 976c60e475cSMatthew G. Knepley const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], 97797b6e6e8SMatthew G. Knepley PetscReal, const PetscReal[], PetscInt, const PetscScalar[], PetscScalar[])) func, ctx, locX);CHKERRQ(ierr); 978c60e475cSMatthew G. Knepley ierr = DMPlexLabelClearCells(dm,label);CHKERRQ(ierr); 979c60e475cSMatthew G. Knepley break; 980c60e475cSMatthew G. Knepley default: break; 981c60e475cSMatthew G. Knepley } 982d7ddef95SMatthew G. Knepley } else if (id == PETSCFV_CLASSID) { 98343ea7facSMatthew G. Knepley if (!faceGeomFVM) continue; 9841c531cf8SMatthew G. Knepley ierr = DMPlexInsertBoundaryValuesRiemann(dm, time, faceGeomFVM, cellGeomFVM, gradFVM, field, Nc, comps, label, numids, ids, 985b278463cSMatthew G. Knepley (PetscErrorCode (*)(PetscReal,const PetscReal*,const PetscReal*,const PetscScalar*,PetscScalar*,void*)) func, ctx, locX);CHKERRQ(ierr); 986ff1e0c32SBarry Smith } else SETERRQ1(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %D", field); 98755f2e967SMatthew G. Knepley } 98855f2e967SMatthew G. Knepley PetscFunctionReturn(0); 98955f2e967SMatthew G. Knepley } 99055f2e967SMatthew G. Knepley 991f1d73a7aSMatthew G. Knepley /*@ 992f1d73a7aSMatthew G. Knepley DMPlexInsertBoundaryValues - Puts coefficients which represent boundary values into the local solution vector 993f1d73a7aSMatthew G. Knepley 994f1d73a7aSMatthew G. Knepley Input Parameters: 995f1d73a7aSMatthew G. Knepley + dm - The DM 996f1d73a7aSMatthew G. Knepley . insertEssential - Should I insert essential (e.g. Dirichlet) or inessential (e.g. Neumann) boundary conditions 997f1d73a7aSMatthew G. Knepley . time - The time 998f1d73a7aSMatthew G. Knepley . faceGeomFVM - Face geometry data for FV discretizations 999f1d73a7aSMatthew G. Knepley . cellGeomFVM - Cell geometry data for FV discretizations 1000f1d73a7aSMatthew G. Knepley - gradFVM - Gradient reconstruction data for FV discretizations 1001f1d73a7aSMatthew G. Knepley 1002f1d73a7aSMatthew G. Knepley Output Parameters: 1003f1d73a7aSMatthew G. Knepley . locX - Solution updated with boundary values 1004f1d73a7aSMatthew G. Knepley 1005f1d73a7aSMatthew G. Knepley Level: developer 1006f1d73a7aSMatthew G. Knepley 1007f1d73a7aSMatthew G. Knepley .seealso: DMProjectFunctionLabelLocal() 1008f1d73a7aSMatthew G. Knepley @*/ 1009f1d73a7aSMatthew G. Knepley PetscErrorCode DMPlexInsertBoundaryValues(DM dm, PetscBool insertEssential, Vec locX, PetscReal time, Vec faceGeomFVM, Vec cellGeomFVM, Vec gradFVM) 1010f1d73a7aSMatthew G. Knepley { 1011f1d73a7aSMatthew G. Knepley PetscErrorCode ierr; 1012f1d73a7aSMatthew G. Knepley 1013f1d73a7aSMatthew G. Knepley PetscFunctionBegin; 1014f1d73a7aSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 1015f1d73a7aSMatthew G. Knepley PetscValidHeaderSpecific(locX, VEC_CLASSID, 2); 1016f1d73a7aSMatthew G. Knepley if (faceGeomFVM) {PetscValidHeaderSpecific(faceGeomFVM, VEC_CLASSID, 4);} 1017f1d73a7aSMatthew G. Knepley if (cellGeomFVM) {PetscValidHeaderSpecific(cellGeomFVM, VEC_CLASSID, 5);} 1018f1d73a7aSMatthew G. Knepley if (gradFVM) {PetscValidHeaderSpecific(gradFVM, VEC_CLASSID, 6);} 1019f1d73a7aSMatthew G. Knepley ierr = PetscTryMethod(dm,"DMPlexInsertBoundaryValues_C",(DM,PetscBool,Vec,PetscReal,Vec,Vec,Vec),(dm,insertEssential,locX,time,faceGeomFVM,cellGeomFVM,gradFVM));CHKERRQ(ierr); 1020f1d73a7aSMatthew G. Knepley PetscFunctionReturn(0); 1021f1d73a7aSMatthew G. Knepley } 1022f1d73a7aSMatthew G. Knepley 10230709b2feSToby Isaac PetscErrorCode DMComputeL2Diff_Plex(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal [], PetscInt, PetscScalar *, void *), void **ctxs, Vec X, PetscReal *diff) 1024cb1e1211SMatthew G Knepley { 1025574a98acSMatthew G. Knepley Vec localX; 1026574a98acSMatthew G. Knepley PetscErrorCode ierr; 1027574a98acSMatthew G. Knepley 1028574a98acSMatthew G. Knepley PetscFunctionBegin; 1029574a98acSMatthew G. Knepley ierr = DMGetLocalVector(dm, &localX);CHKERRQ(ierr); 10305d42b983SMatthew G. Knepley ierr = DMPlexInsertBoundaryValues(dm, PETSC_TRUE, localX, time, NULL, NULL, NULL);CHKERRQ(ierr); 1031574a98acSMatthew G. Knepley ierr = DMGlobalToLocalBegin(dm, X, INSERT_VALUES, localX);CHKERRQ(ierr); 1032574a98acSMatthew G. Knepley ierr = DMGlobalToLocalEnd(dm, X, INSERT_VALUES, localX);CHKERRQ(ierr); 1033574a98acSMatthew G. Knepley ierr = DMPlexComputeL2DiffLocal(dm, time, funcs, ctxs, localX, diff);CHKERRQ(ierr); 1034574a98acSMatthew G. Knepley ierr = DMRestoreLocalVector(dm, &localX);CHKERRQ(ierr); 1035574a98acSMatthew G. Knepley PetscFunctionReturn(0); 1036574a98acSMatthew G. Knepley } 1037574a98acSMatthew G. Knepley 1038574a98acSMatthew G. Knepley /*@C 1039ca3d3a14SMatthew G. Knepley DMComputeL2DiffLocal - This function computes the L_2 difference between a function u and an FEM interpolant solution u_h. 1040574a98acSMatthew G. Knepley 1041d083f849SBarry Smith Collective on dm 1042c0f8e1fdSMatthew G. Knepley 1043574a98acSMatthew G. Knepley Input Parameters: 1044574a98acSMatthew G. Knepley + dm - The DM 1045574a98acSMatthew G. Knepley . time - The time 1046574a98acSMatthew G. Knepley . funcs - The functions to evaluate for each field component 1047574a98acSMatthew G. Knepley . ctxs - Optional array of contexts to pass to each function, or NULL. 1048574a98acSMatthew G. Knepley - localX - The coefficient vector u_h, a local vector 1049574a98acSMatthew G. Knepley 1050574a98acSMatthew G. Knepley Output Parameter: 1051574a98acSMatthew G. Knepley . diff - The diff ||u - u_h||_2 1052574a98acSMatthew G. Knepley 1053574a98acSMatthew G. Knepley Level: developer 1054574a98acSMatthew G. Knepley 1055574a98acSMatthew G. Knepley .seealso: DMProjectFunction(), DMComputeL2FieldDiff(), DMComputeL2GradientDiff() 1056574a98acSMatthew G. Knepley @*/ 1057574a98acSMatthew G. Knepley PetscErrorCode DMPlexComputeL2DiffLocal(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal [], PetscInt, PetscScalar *, void *), void **ctxs, Vec localX, PetscReal *diff) 1058574a98acSMatthew G. Knepley { 10590f09c10fSMatthew G. Knepley const PetscInt debug = ((DM_Plex*)dm->data)->printL2; 1060ca3d3a14SMatthew G. Knepley DM tdm; 1061ca3d3a14SMatthew G. Knepley Vec tv; 1062cb1e1211SMatthew G Knepley PetscSection section; 1063c5bbbd5bSMatthew G. Knepley PetscQuadrature quad; 10644bee2e38SMatthew G. Knepley PetscFEGeom fegeom; 106515496722SMatthew G. Knepley PetscScalar *funcVal, *interpolant; 10664bee2e38SMatthew G. Knepley PetscReal *coords, *gcoords; 1067cb1e1211SMatthew G Knepley PetscReal localDiff = 0.0; 10687318780aSToby Isaac const PetscReal *quadWeights; 1069*412e9a14SMatthew G. Knepley PetscInt dim, coordDim, numFields, numComponents = 0, qNc, Nq, cellHeight, cStart, cEnd, c, field, fieldOffset; 1070ca3d3a14SMatthew G. Knepley PetscBool transform; 1071cb1e1211SMatthew G Knepley PetscErrorCode ierr; 1072cb1e1211SMatthew G Knepley 1073cb1e1211SMatthew G Knepley PetscFunctionBegin; 1074c73cfb54SMatthew G. Knepley ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr); 10757318780aSToby Isaac ierr = DMGetCoordinateDim(dm, &coordDim);CHKERRQ(ierr); 10762a4e142eSMatthew G. Knepley fegeom.dimEmbed = coordDim; 107792fd8e1eSJed Brown ierr = DMGetLocalSection(dm, §ion);CHKERRQ(ierr); 1078cb1e1211SMatthew G Knepley ierr = PetscSectionGetNumFields(section, &numFields);CHKERRQ(ierr); 1079ca3d3a14SMatthew G. Knepley ierr = DMGetBasisTransformDM_Internal(dm, &tdm);CHKERRQ(ierr); 1080ca3d3a14SMatthew G. Knepley ierr = DMGetBasisTransformVec_Internal(dm, &tv);CHKERRQ(ierr); 1081ca3d3a14SMatthew G. Knepley ierr = DMHasBasisTransform(dm, &transform);CHKERRQ(ierr); 1082cb1e1211SMatthew G Knepley for (field = 0; field < numFields; ++field) { 108315496722SMatthew G. Knepley PetscObject obj; 108415496722SMatthew G. Knepley PetscClassId id; 1085c5bbbd5bSMatthew G. Knepley PetscInt Nc; 1086c5bbbd5bSMatthew G. Knepley 108744a7f3ddSMatthew G. Knepley ierr = DMGetField(dm, field, NULL, &obj);CHKERRQ(ierr); 108815496722SMatthew G. Knepley ierr = PetscObjectGetClassId(obj, &id);CHKERRQ(ierr); 108915496722SMatthew G. Knepley if (id == PETSCFE_CLASSID) { 109015496722SMatthew G. Knepley PetscFE fe = (PetscFE) obj; 109115496722SMatthew G. Knepley 10920f2d7e86SMatthew G. Knepley ierr = PetscFEGetQuadrature(fe, &quad);CHKERRQ(ierr); 10930f2d7e86SMatthew G. Knepley ierr = PetscFEGetNumComponents(fe, &Nc);CHKERRQ(ierr); 109415496722SMatthew G. Knepley } else if (id == PETSCFV_CLASSID) { 109515496722SMatthew G. Knepley PetscFV fv = (PetscFV) obj; 109615496722SMatthew G. Knepley 109715496722SMatthew G. Knepley ierr = PetscFVGetQuadrature(fv, &quad);CHKERRQ(ierr); 109815496722SMatthew G. Knepley ierr = PetscFVGetNumComponents(fv, &Nc);CHKERRQ(ierr); 1099ff1e0c32SBarry Smith } else SETERRQ1(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %D", field); 1100c5bbbd5bSMatthew G. Knepley numComponents += Nc; 1101cb1e1211SMatthew G Knepley } 11029c3cf19fSMatthew G. Knepley ierr = PetscQuadratureGetData(quad, NULL, &qNc, &Nq, NULL, &quadWeights);CHKERRQ(ierr); 1103beaa55a6SMatthew G. Knepley if ((qNc != 1) && (qNc != numComponents)) SETERRQ2(PetscObjectComm((PetscObject) dm), PETSC_ERR_ARG_SIZ, "Quadrature components %D != %D field components", qNc, numComponents); 11042a4e142eSMatthew G. Knepley ierr = PetscMalloc6(numComponents,&funcVal,numComponents,&interpolant,coordDim*Nq,&coords,Nq,&fegeom.detJ,coordDim*coordDim*Nq,&fegeom.J,coordDim*coordDim*Nq,&fegeom.invJ);CHKERRQ(ierr); 1105aed3cbd0SMatthew G. Knepley ierr = DMPlexGetVTKCellHeight(dm, &cellHeight);CHKERRQ(ierr); 1106*412e9a14SMatthew G. Knepley ierr = DMPlexGetSimplexOrBoxCells(dm, cellHeight, &cStart, &cEnd);CHKERRQ(ierr); 1107cb1e1211SMatthew G Knepley for (c = cStart; c < cEnd; ++c) { 1108a1e44745SMatthew G. Knepley PetscScalar *x = NULL; 1109cb1e1211SMatthew G Knepley PetscReal elemDiff = 0.0; 11109c3cf19fSMatthew G. Knepley PetscInt qc = 0; 1111cb1e1211SMatthew G Knepley 11122a4e142eSMatthew G. Knepley ierr = DMPlexComputeCellGeometryFEM(dm, c, quad, coords, fegeom.J, fegeom.invJ, fegeom.detJ);CHKERRQ(ierr); 1113cb1e1211SMatthew G Knepley ierr = DMPlexVecGetClosure(dm, NULL, localX, c, NULL, &x);CHKERRQ(ierr); 1114cb1e1211SMatthew G Knepley 111515496722SMatthew G. Knepley for (field = 0, fieldOffset = 0; field < numFields; ++field) { 111615496722SMatthew G. Knepley PetscObject obj; 111715496722SMatthew G. Knepley PetscClassId id; 1118c110b1eeSGeoffrey Irving void * const ctx = ctxs ? ctxs[field] : NULL; 111915496722SMatthew G. Knepley PetscInt Nb, Nc, q, fc; 1120cb1e1211SMatthew G Knepley 112144a7f3ddSMatthew G. Knepley ierr = DMGetField(dm, field, NULL, &obj);CHKERRQ(ierr); 112215496722SMatthew G. Knepley ierr = PetscObjectGetClassId(obj, &id);CHKERRQ(ierr); 112315496722SMatthew G. Knepley if (id == PETSCFE_CLASSID) {ierr = PetscFEGetNumComponents((PetscFE) obj, &Nc);CHKERRQ(ierr);ierr = PetscFEGetDimension((PetscFE) obj, &Nb);CHKERRQ(ierr);} 112415496722SMatthew G. Knepley else if (id == PETSCFV_CLASSID) {ierr = PetscFVGetNumComponents((PetscFV) obj, &Nc);CHKERRQ(ierr);Nb = 1;} 1125ff1e0c32SBarry Smith else SETERRQ1(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %D", field); 1126cb1e1211SMatthew G Knepley if (debug) { 1127cb1e1211SMatthew G Knepley char title[1024]; 1128ff1e0c32SBarry Smith ierr = PetscSNPrintf(title, 1023, "Solution for Field %D", field);CHKERRQ(ierr); 11294c848028SMatthew G. Knepley ierr = DMPrintCellVector(c, title, Nb, &x[fieldOffset]);CHKERRQ(ierr); 1130cb1e1211SMatthew G Knepley } 11317318780aSToby Isaac for (q = 0; q < Nq; ++q) { 11322a4e142eSMatthew G. Knepley PetscFEGeom qgeom; 11332a4e142eSMatthew G. Knepley 11342a4e142eSMatthew G. Knepley qgeom.dimEmbed = fegeom.dimEmbed; 11352a4e142eSMatthew G. Knepley qgeom.J = &fegeom.J[q*coordDim*coordDim]; 11362a4e142eSMatthew G. Knepley qgeom.invJ = &fegeom.invJ[q*coordDim*coordDim]; 11372a4e142eSMatthew G. Knepley qgeom.detJ = &fegeom.detJ[q]; 1138ff1e0c32SBarry Smith if (fegeom.detJ[q] <= 0.0) SETERRQ3(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Invalid determinant %g for element %D, point %D", (double)fegeom.detJ[q], c, q); 1139d3a7d86cSMatthew G. Knepley if (transform) { 1140d3a7d86cSMatthew G. Knepley gcoords = &coords[coordDim*Nq]; 1141d3a7d86cSMatthew G. Knepley ierr = DMPlexBasisTransformApplyReal_Internal(dm, &coords[coordDim*q], PETSC_TRUE, coordDim, &coords[coordDim*q], gcoords, dm->transformCtx);CHKERRQ(ierr); 1142d3a7d86cSMatthew G. Knepley } else { 1143d3a7d86cSMatthew G. Knepley gcoords = &coords[coordDim*q]; 1144d3a7d86cSMatthew G. Knepley } 1145ca3d3a14SMatthew G. Knepley ierr = (*funcs[field])(coordDim, time, gcoords, Nc, funcVal, ctx); 1146e735a8a9SMatthew G. Knepley if (ierr) { 1147e735a8a9SMatthew G. Knepley PetscErrorCode ierr2; 1148e735a8a9SMatthew G. Knepley ierr2 = DMPlexVecRestoreClosure(dm, NULL, localX, c, NULL, &x);CHKERRQ(ierr2); 1149e735a8a9SMatthew G. Knepley ierr2 = DMRestoreLocalVector(dm, &localX);CHKERRQ(ierr2); 11502a4e142eSMatthew G. Knepley ierr2 = PetscFree6(funcVal,interpolant,coords,fegeom.detJ,fegeom.J,fegeom.invJ);CHKERRQ(ierr2); 1151e735a8a9SMatthew G. Knepley CHKERRQ(ierr); 1152e735a8a9SMatthew G. Knepley } 1153ca3d3a14SMatthew G. Knepley if (transform) {ierr = DMPlexBasisTransformApply_Internal(dm, &coords[coordDim*q], PETSC_FALSE, Nc, funcVal, funcVal, dm->transformCtx);CHKERRQ(ierr);} 11542a4e142eSMatthew G. Knepley if (id == PETSCFE_CLASSID) {ierr = PetscFEInterpolate_Static((PetscFE) obj, &x[fieldOffset], &qgeom, q, interpolant);CHKERRQ(ierr);} 115515496722SMatthew G. Knepley else if (id == PETSCFV_CLASSID) {ierr = PetscFVInterpolate_Static((PetscFV) obj, &x[fieldOffset], q, interpolant);CHKERRQ(ierr);} 1156ff1e0c32SBarry Smith else SETERRQ1(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %D", field); 115715496722SMatthew G. Knepley for (fc = 0; fc < Nc; ++fc) { 1158beaa55a6SMatthew G. Knepley const PetscReal wt = quadWeights[q*qNc+(qNc == 1 ? 0 : qc+fc)]; 1159ff1e0c32SBarry Smith if (debug) {ierr = PetscPrintf(PETSC_COMM_SELF, " elem %D field %D,%D diff %g\n", c, field, fc, (double)(PetscSqr(PetscRealPart(interpolant[fc] - funcVal[fc]))*wt*fegeom.detJ[q]));CHKERRQ(ierr);} 11604bee2e38SMatthew G. Knepley elemDiff += PetscSqr(PetscRealPart(interpolant[fc] - funcVal[fc]))*wt*fegeom.detJ[q]; 1161cb1e1211SMatthew G Knepley } 1162cb1e1211SMatthew G Knepley } 11639c3cf19fSMatthew G. Knepley fieldOffset += Nb; 1164beaa55a6SMatthew G. Knepley qc += Nc; 1165cb1e1211SMatthew G Knepley } 1166cb1e1211SMatthew G Knepley ierr = DMPlexVecRestoreClosure(dm, NULL, localX, c, NULL, &x);CHKERRQ(ierr); 1167ff1e0c32SBarry Smith if (debug) {ierr = PetscPrintf(PETSC_COMM_SELF, " elem %D diff %g\n", c, (double)elemDiff);CHKERRQ(ierr);} 1168cb1e1211SMatthew G Knepley localDiff += elemDiff; 1169cb1e1211SMatthew G Knepley } 11702a4e142eSMatthew G. Knepley ierr = PetscFree6(funcVal,interpolant,coords,fegeom.detJ,fegeom.J,fegeom.invJ);CHKERRQ(ierr); 1171b2566f29SBarry Smith ierr = MPIU_Allreduce(&localDiff, diff, 1, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)dm));CHKERRQ(ierr); 1172cb1e1211SMatthew G Knepley *diff = PetscSqrtReal(*diff); 1173cb1e1211SMatthew G Knepley PetscFunctionReturn(0); 1174cb1e1211SMatthew G Knepley } 1175cb1e1211SMatthew G Knepley 1176b698f381SToby Isaac PetscErrorCode DMComputeL2GradientDiff_Plex(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal [], const PetscReal [], PetscInt, PetscScalar *, void *), void **ctxs, Vec X, const PetscReal n[], PetscReal *diff) 1177cb1e1211SMatthew G Knepley { 11780f09c10fSMatthew G. Knepley const PetscInt debug = ((DM_Plex*)dm->data)->printL2; 1179ca3d3a14SMatthew G. Knepley DM tdm; 1180cb1e1211SMatthew G Knepley PetscSection section; 118140e14135SMatthew G. Knepley PetscQuadrature quad; 1182ca3d3a14SMatthew G. Knepley Vec localX, tv; 11839c3cf19fSMatthew G. Knepley PetscScalar *funcVal, *interpolant; 11842a4e142eSMatthew G. Knepley const PetscReal *quadWeights; 11854bee2e38SMatthew G. Knepley PetscFEGeom fegeom; 11864bee2e38SMatthew G. Knepley PetscReal *coords, *gcoords; 118740e14135SMatthew G. Knepley PetscReal localDiff = 0.0; 1188485ad865SMatthew G. Knepley PetscInt dim, coordDim, qNc = 0, Nq = 0, numFields, numComponents = 0, cStart, cEnd, c, field, fieldOffset; 1189ca3d3a14SMatthew G. Knepley PetscBool transform; 1190cb1e1211SMatthew G Knepley PetscErrorCode ierr; 1191cb1e1211SMatthew G Knepley 1192cb1e1211SMatthew G Knepley PetscFunctionBegin; 1193c73cfb54SMatthew G. Knepley ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr); 11947318780aSToby Isaac ierr = DMGetCoordinateDim(dm, &coordDim);CHKERRQ(ierr); 11954bee2e38SMatthew G. Knepley fegeom.dimEmbed = coordDim; 119692fd8e1eSJed Brown ierr = DMGetLocalSection(dm, §ion);CHKERRQ(ierr); 119740e14135SMatthew G. Knepley ierr = PetscSectionGetNumFields(section, &numFields);CHKERRQ(ierr); 119840e14135SMatthew G. Knepley ierr = DMGetLocalVector(dm, &localX);CHKERRQ(ierr); 119940e14135SMatthew G. Knepley ierr = DMGlobalToLocalBegin(dm, X, INSERT_VALUES, localX);CHKERRQ(ierr); 120040e14135SMatthew G. Knepley ierr = DMGlobalToLocalEnd(dm, X, INSERT_VALUES, localX);CHKERRQ(ierr); 1201ca3d3a14SMatthew G. Knepley ierr = DMGetBasisTransformDM_Internal(dm, &tdm);CHKERRQ(ierr); 1202ca3d3a14SMatthew G. Knepley ierr = DMGetBasisTransformVec_Internal(dm, &tv);CHKERRQ(ierr); 1203ca3d3a14SMatthew G. Knepley ierr = DMHasBasisTransform(dm, &transform);CHKERRQ(ierr); 1204652b88e8SMatthew G. Knepley for (field = 0; field < numFields; ++field) { 12050f2d7e86SMatthew G. Knepley PetscFE fe; 120640e14135SMatthew G. Knepley PetscInt Nc; 1207652b88e8SMatthew G. Knepley 120844a7f3ddSMatthew G. Knepley ierr = DMGetField(dm, field, NULL, (PetscObject *) &fe);CHKERRQ(ierr); 12090f2d7e86SMatthew G. Knepley ierr = PetscFEGetQuadrature(fe, &quad);CHKERRQ(ierr); 12100f2d7e86SMatthew G. Knepley ierr = PetscFEGetNumComponents(fe, &Nc);CHKERRQ(ierr); 121140e14135SMatthew G. Knepley numComponents += Nc; 1212652b88e8SMatthew G. Knepley } 12132a4e142eSMatthew G. Knepley ierr = PetscQuadratureGetData(quad, NULL, &qNc, &Nq, NULL, &quadWeights);CHKERRQ(ierr); 1214beaa55a6SMatthew G. Knepley if ((qNc != 1) && (qNc != numComponents)) SETERRQ2(PetscObjectComm((PetscObject) dm), PETSC_ERR_ARG_SIZ, "Quadrature components %D != %D field components", qNc, numComponents); 12154d6f44ffSToby Isaac /* ierr = DMProjectFunctionLocal(dm, fe, funcs, INSERT_BC_VALUES, localX);CHKERRQ(ierr); */ 12164bee2e38SMatthew G. Knepley ierr = PetscMalloc6(numComponents,&funcVal,coordDim*Nq,&coords,coordDim*coordDim*Nq,&fegeom.J,coordDim*coordDim*Nq,&fegeom.invJ,numComponents*coordDim,&interpolant,Nq,&fegeom.detJ);CHKERRQ(ierr); 1217*412e9a14SMatthew G. Knepley ierr = DMPlexGetSimplexOrBoxCells(dm, 0, &cStart, &cEnd);CHKERRQ(ierr); 121840e14135SMatthew G. Knepley for (c = cStart; c < cEnd; ++c) { 121940e14135SMatthew G. Knepley PetscScalar *x = NULL; 122040e14135SMatthew G. Knepley PetscReal elemDiff = 0.0; 12219c3cf19fSMatthew G. Knepley PetscInt qc = 0; 1222652b88e8SMatthew G. Knepley 12234bee2e38SMatthew G. Knepley ierr = DMPlexComputeCellGeometryFEM(dm, c, quad, coords, fegeom.J, fegeom.invJ, fegeom.detJ);CHKERRQ(ierr); 122440e14135SMatthew G. Knepley ierr = DMPlexVecGetClosure(dm, NULL, localX, c, NULL, &x);CHKERRQ(ierr); 122540e14135SMatthew G. Knepley 12269c3cf19fSMatthew G. Knepley for (field = 0, fieldOffset = 0; field < numFields; ++field) { 12270f2d7e86SMatthew G. Knepley PetscFE fe; 122851259fa3SMatthew G. Knepley void * const ctx = ctxs ? ctxs[field] : NULL; 12299c3cf19fSMatthew G. Knepley PetscInt Nb, Nc, q, fc; 123040e14135SMatthew G. Knepley 123144a7f3ddSMatthew G. Knepley ierr = DMGetField(dm, field, NULL, (PetscObject *) &fe);CHKERRQ(ierr); 12320f2d7e86SMatthew G. Knepley ierr = PetscFEGetDimension(fe, &Nb);CHKERRQ(ierr); 12339c3cf19fSMatthew G. Knepley ierr = PetscFEGetNumComponents(fe, &Nc);CHKERRQ(ierr); 123440e14135SMatthew G. Knepley if (debug) { 123540e14135SMatthew G. Knepley char title[1024]; 1236ff1e0c32SBarry Smith ierr = PetscSNPrintf(title, 1023, "Solution for Field %D", field);CHKERRQ(ierr); 12379c3cf19fSMatthew G. Knepley ierr = DMPrintCellVector(c, title, Nb, &x[fieldOffset]);CHKERRQ(ierr); 1238652b88e8SMatthew G. Knepley } 12399c3cf19fSMatthew G. Knepley for (q = 0; q < Nq; ++q) { 12402a4e142eSMatthew G. Knepley PetscFEGeom qgeom; 12412a4e142eSMatthew G. Knepley 12422a4e142eSMatthew G. Knepley qgeom.dimEmbed = fegeom.dimEmbed; 12432a4e142eSMatthew G. Knepley qgeom.J = &fegeom.J[q*coordDim*coordDim]; 12442a4e142eSMatthew G. Knepley qgeom.invJ = &fegeom.invJ[q*coordDim*coordDim]; 12452a4e142eSMatthew G. Knepley qgeom.detJ = &fegeom.detJ[q]; 1246ff1e0c32SBarry Smith if (fegeom.detJ[q] <= 0.0) SETERRQ3(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Invalid determinant %g for element %D, quadrature points %D", (double)fegeom.detJ[q], c, q); 1247d3a7d86cSMatthew G. Knepley if (transform) { 1248d3a7d86cSMatthew G. Knepley gcoords = &coords[coordDim*Nq]; 1249d3a7d86cSMatthew G. Knepley ierr = DMPlexBasisTransformApplyReal_Internal(dm, &coords[coordDim*q], PETSC_TRUE, coordDim, &coords[coordDim*q], gcoords, dm->transformCtx);CHKERRQ(ierr); 1250d3a7d86cSMatthew G. Knepley } else { 1251d3a7d86cSMatthew G. Knepley gcoords = &coords[coordDim*q]; 1252d3a7d86cSMatthew G. Knepley } 12534bee2e38SMatthew G. Knepley ierr = (*funcs[field])(coordDim, time, gcoords, n, Nc, funcVal, ctx); 1254e735a8a9SMatthew G. Knepley if (ierr) { 1255e735a8a9SMatthew G. Knepley PetscErrorCode ierr2; 1256e735a8a9SMatthew G. Knepley ierr2 = DMPlexVecRestoreClosure(dm, NULL, localX, c, NULL, &x);CHKERRQ(ierr2); 1257e735a8a9SMatthew G. Knepley ierr2 = DMRestoreLocalVector(dm, &localX);CHKERRQ(ierr2); 12584bee2e38SMatthew G. Knepley ierr2 = PetscFree6(funcVal,coords,fegeom.J,fegeom.invJ,interpolant,fegeom.detJ);CHKERRQ(ierr2); 1259e735a8a9SMatthew G. Knepley CHKERRQ(ierr); 1260e735a8a9SMatthew G. Knepley } 1261ca3d3a14SMatthew G. Knepley if (transform) {ierr = DMPlexBasisTransformApply_Internal(dm, &coords[coordDim*q], PETSC_FALSE, Nc, funcVal, funcVal, dm->transformCtx);CHKERRQ(ierr);} 12622a4e142eSMatthew G. Knepley ierr = PetscFEInterpolateGradient_Static(fe, &x[fieldOffset], &qgeom, q, interpolant);CHKERRQ(ierr); 12634bee2e38SMatthew G. Knepley /* Overwrite with the dot product if the normal is given */ 12644bee2e38SMatthew G. Knepley if (n) { 12654bee2e38SMatthew G. Knepley for (fc = 0; fc < Nc; ++fc) { 12664bee2e38SMatthew G. Knepley PetscScalar sum = 0.0; 12674bee2e38SMatthew G. Knepley PetscInt d; 12684bee2e38SMatthew G. Knepley for (d = 0; d < dim; ++d) sum += interpolant[fc*dim+d]*n[d]; 12694bee2e38SMatthew G. Knepley interpolant[fc] = sum; 12704bee2e38SMatthew G. Knepley } 12714bee2e38SMatthew G. Knepley } 12729c3cf19fSMatthew G. Knepley for (fc = 0; fc < Nc; ++fc) { 1273beaa55a6SMatthew G. Knepley const PetscReal wt = quadWeights[q*qNc+(qNc == 1 ? 0 : qc+fc)]; 1274ff1e0c32SBarry Smith if (debug) {ierr = PetscPrintf(PETSC_COMM_SELF, " elem %D fieldDer %D,%D diff %g\n", c, field, fc, (double)(PetscSqr(PetscRealPart(interpolant[fc] - funcVal[fc]))*wt*fegeom.detJ[q]));CHKERRQ(ierr);} 12754bee2e38SMatthew G. Knepley elemDiff += PetscSqr(PetscRealPart(interpolant[fc] - funcVal[fc]))*wt*fegeom.detJ[q]; 127640e14135SMatthew G. Knepley } 127740e14135SMatthew G. Knepley } 12789c3cf19fSMatthew G. Knepley fieldOffset += Nb; 12799c3cf19fSMatthew G. Knepley qc += Nc; 128040e14135SMatthew G. Knepley } 128140e14135SMatthew G. Knepley ierr = DMPlexVecRestoreClosure(dm, NULL, localX, c, NULL, &x);CHKERRQ(ierr); 1282ff1e0c32SBarry Smith if (debug) {ierr = PetscPrintf(PETSC_COMM_SELF, " elem %D diff %g\n", c, (double)elemDiff);CHKERRQ(ierr);} 128340e14135SMatthew G. Knepley localDiff += elemDiff; 128440e14135SMatthew G. Knepley } 12854bee2e38SMatthew G. Knepley ierr = PetscFree6(funcVal,coords,fegeom.J,fegeom.invJ,interpolant,fegeom.detJ);CHKERRQ(ierr); 128640e14135SMatthew G. Knepley ierr = DMRestoreLocalVector(dm, &localX);CHKERRQ(ierr); 1287b2566f29SBarry Smith ierr = MPIU_Allreduce(&localDiff, diff, 1, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)dm));CHKERRQ(ierr); 128840e14135SMatthew G. Knepley *diff = PetscSqrtReal(*diff); 1289cb1e1211SMatthew G Knepley PetscFunctionReturn(0); 1290cb1e1211SMatthew G Knepley } 1291cb1e1211SMatthew G Knepley 1292c6eecec3SToby Isaac PetscErrorCode DMComputeL2FieldDiff_Plex(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal [], PetscInt, PetscScalar *, void *), void **ctxs, Vec X, PetscReal *diff) 129373d901b8SMatthew G. Knepley { 12940f09c10fSMatthew G. Knepley const PetscInt debug = ((DM_Plex*)dm->data)->printL2; 1295ca3d3a14SMatthew G. Knepley DM tdm; 129673d901b8SMatthew G. Knepley PetscSection section; 129773d901b8SMatthew G. Knepley PetscQuadrature quad; 1298ca3d3a14SMatthew G. Knepley Vec localX, tv; 12994bee2e38SMatthew G. Knepley PetscFEGeom fegeom; 130015496722SMatthew G. Knepley PetscScalar *funcVal, *interpolant; 13014bee2e38SMatthew G. Knepley PetscReal *coords, *gcoords; 130273d901b8SMatthew G. Knepley PetscReal *localDiff; 130315496722SMatthew G. Knepley const PetscReal *quadPoints, *quadWeights; 1304485ad865SMatthew G. Knepley PetscInt dim, coordDim, numFields, numComponents = 0, qNc, Nq, cStart, cEnd, c, field, fieldOffset; 1305ca3d3a14SMatthew G. Knepley PetscBool transform; 130673d901b8SMatthew G. Knepley PetscErrorCode ierr; 130773d901b8SMatthew G. Knepley 130873d901b8SMatthew G. Knepley PetscFunctionBegin; 1309c73cfb54SMatthew G. Knepley ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr); 13107318780aSToby Isaac ierr = DMGetCoordinateDim(dm, &coordDim);CHKERRQ(ierr); 131192fd8e1eSJed Brown ierr = DMGetLocalSection(dm, §ion);CHKERRQ(ierr); 131273d901b8SMatthew G. Knepley ierr = PetscSectionGetNumFields(section, &numFields);CHKERRQ(ierr); 131373d901b8SMatthew G. Knepley ierr = DMGetLocalVector(dm, &localX);CHKERRQ(ierr); 1314ca3d3a14SMatthew G. Knepley ierr = VecSet(localX, 0.0);CHKERRQ(ierr); 131573d901b8SMatthew G. Knepley ierr = DMGlobalToLocalBegin(dm, X, INSERT_VALUES, localX);CHKERRQ(ierr); 131673d901b8SMatthew G. Knepley ierr = DMGlobalToLocalEnd(dm, X, INSERT_VALUES, localX);CHKERRQ(ierr); 1317ca3d3a14SMatthew G. Knepley ierr = DMProjectFunctionLocal(dm, time, funcs, ctxs, INSERT_BC_VALUES, localX);CHKERRQ(ierr); 1318ca3d3a14SMatthew G. Knepley ierr = DMGetBasisTransformDM_Internal(dm, &tdm);CHKERRQ(ierr); 1319ca3d3a14SMatthew G. Knepley ierr = DMGetBasisTransformVec_Internal(dm, &tv);CHKERRQ(ierr); 1320ca3d3a14SMatthew G. Knepley ierr = DMHasBasisTransform(dm, &transform);CHKERRQ(ierr); 132173d901b8SMatthew G. Knepley for (field = 0; field < numFields; ++field) { 132215496722SMatthew G. Knepley PetscObject obj; 132315496722SMatthew G. Knepley PetscClassId id; 132473d901b8SMatthew G. Knepley PetscInt Nc; 132573d901b8SMatthew G. Knepley 132644a7f3ddSMatthew G. Knepley ierr = DMGetField(dm, field, NULL, &obj);CHKERRQ(ierr); 132715496722SMatthew G. Knepley ierr = PetscObjectGetClassId(obj, &id);CHKERRQ(ierr); 132815496722SMatthew G. Knepley if (id == PETSCFE_CLASSID) { 132915496722SMatthew G. Knepley PetscFE fe = (PetscFE) obj; 133015496722SMatthew G. Knepley 13310f2d7e86SMatthew G. Knepley ierr = PetscFEGetQuadrature(fe, &quad);CHKERRQ(ierr); 13320f2d7e86SMatthew G. Knepley ierr = PetscFEGetNumComponents(fe, &Nc);CHKERRQ(ierr); 133315496722SMatthew G. Knepley } else if (id == PETSCFV_CLASSID) { 133415496722SMatthew G. Knepley PetscFV fv = (PetscFV) obj; 133515496722SMatthew G. Knepley 133615496722SMatthew G. Knepley ierr = PetscFVGetQuadrature(fv, &quad);CHKERRQ(ierr); 133715496722SMatthew G. Knepley ierr = PetscFVGetNumComponents(fv, &Nc);CHKERRQ(ierr); 1338ff1e0c32SBarry Smith } else SETERRQ1(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %D", field); 133973d901b8SMatthew G. Knepley numComponents += Nc; 134073d901b8SMatthew G. Knepley } 13419c3cf19fSMatthew G. Knepley ierr = PetscQuadratureGetData(quad, NULL, &qNc, &Nq, &quadPoints, &quadWeights);CHKERRQ(ierr); 1342beaa55a6SMatthew G. Knepley if ((qNc != 1) && (qNc != numComponents)) SETERRQ2(PetscObjectComm((PetscObject) dm), PETSC_ERR_ARG_SIZ, "Quadrature components %D != %D field components", qNc, numComponents); 13432a4e142eSMatthew G. Knepley ierr = PetscCalloc7(numFields,&localDiff,numComponents,&funcVal,numComponents,&interpolant,coordDim*(Nq+1),&coords,Nq,&fegeom.detJ,coordDim*coordDim*Nq,&fegeom.J,coordDim*coordDim*Nq,&fegeom.invJ);CHKERRQ(ierr); 1344*412e9a14SMatthew G. Knepley ierr = DMPlexGetSimplexOrBoxCells(dm, 0, &cStart, &cEnd);CHKERRQ(ierr); 134573d901b8SMatthew G. Knepley for (c = cStart; c < cEnd; ++c) { 134673d901b8SMatthew G. Knepley PetscScalar *x = NULL; 13479c3cf19fSMatthew G. Knepley PetscInt qc = 0; 134873d901b8SMatthew G. Knepley 13492a4e142eSMatthew G. Knepley ierr = DMPlexComputeCellGeometryFEM(dm, c, quad, coords, fegeom.J, fegeom.invJ, fegeom.detJ);CHKERRQ(ierr); 135073d901b8SMatthew G. Knepley ierr = DMPlexVecGetClosure(dm, NULL, localX, c, NULL, &x);CHKERRQ(ierr); 135173d901b8SMatthew G. Knepley 135215496722SMatthew G. Knepley for (field = 0, fieldOffset = 0; field < numFields; ++field) { 135315496722SMatthew G. Knepley PetscObject obj; 135415496722SMatthew G. Knepley PetscClassId id; 135573d901b8SMatthew G. Knepley void * const ctx = ctxs ? ctxs[field] : NULL; 135615496722SMatthew G. Knepley PetscInt Nb, Nc, q, fc; 135773d901b8SMatthew G. Knepley 135815496722SMatthew G. Knepley PetscReal elemDiff = 0.0; 135915496722SMatthew G. Knepley 136044a7f3ddSMatthew G. Knepley ierr = DMGetField(dm, field, NULL, &obj);CHKERRQ(ierr); 136115496722SMatthew G. Knepley ierr = PetscObjectGetClassId(obj, &id);CHKERRQ(ierr); 136215496722SMatthew G. Knepley if (id == PETSCFE_CLASSID) {ierr = PetscFEGetNumComponents((PetscFE) obj, &Nc);CHKERRQ(ierr);ierr = PetscFEGetDimension((PetscFE) obj, &Nb);CHKERRQ(ierr);} 136315496722SMatthew G. Knepley else if (id == PETSCFV_CLASSID) {ierr = PetscFVGetNumComponents((PetscFV) obj, &Nc);CHKERRQ(ierr);Nb = 1;} 1364ff1e0c32SBarry Smith else SETERRQ1(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %D", field); 136573d901b8SMatthew G. Knepley if (debug) { 136673d901b8SMatthew G. Knepley char title[1024]; 1367ff1e0c32SBarry Smith ierr = PetscSNPrintf(title, 1023, "Solution for Field %D", field);CHKERRQ(ierr); 1368ca3d3a14SMatthew G. Knepley ierr = DMPrintCellVector(c, title, Nb, &x[fieldOffset]);CHKERRQ(ierr); 136973d901b8SMatthew G. Knepley } 13707318780aSToby Isaac for (q = 0; q < Nq; ++q) { 13712a4e142eSMatthew G. Knepley PetscFEGeom qgeom; 13722a4e142eSMatthew G. Knepley 13732a4e142eSMatthew G. Knepley qgeom.dimEmbed = fegeom.dimEmbed; 13742a4e142eSMatthew G. Knepley qgeom.J = &fegeom.J[q*coordDim*coordDim]; 13752a4e142eSMatthew G. Knepley qgeom.invJ = &fegeom.invJ[q*coordDim*coordDim]; 13762a4e142eSMatthew G. Knepley qgeom.detJ = &fegeom.detJ[q]; 1377ff1e0c32SBarry Smith if (fegeom.detJ[q] <= 0.0) SETERRQ3(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Invalid determinant %g for element %D, quadrature point %D", (double)fegeom.detJ[q], c, q); 1378d3a7d86cSMatthew G. Knepley if (transform) { 1379d3a7d86cSMatthew G. Knepley gcoords = &coords[coordDim*Nq]; 1380d3a7d86cSMatthew G. Knepley ierr = DMPlexBasisTransformApplyReal_Internal(dm, &coords[coordDim*q], PETSC_TRUE, coordDim, &coords[coordDim*q], gcoords, dm->transformCtx);CHKERRQ(ierr); 1381d3a7d86cSMatthew G. Knepley } else { 1382d3a7d86cSMatthew G. Knepley gcoords = &coords[coordDim*q]; 1383d3a7d86cSMatthew G. Knepley } 13844bee2e38SMatthew G. Knepley ierr = (*funcs[field])(coordDim, time, gcoords, Nc, funcVal, ctx); 1385e735a8a9SMatthew G. Knepley if (ierr) { 1386e735a8a9SMatthew G. Knepley PetscErrorCode ierr2; 1387e735a8a9SMatthew G. Knepley ierr2 = DMPlexVecRestoreClosure(dm, NULL, localX, c, NULL, &x);CHKERRQ(ierr2); 1388e735a8a9SMatthew G. Knepley ierr2 = DMRestoreLocalVector(dm, &localX);CHKERRQ(ierr2); 13892a4e142eSMatthew G. Knepley ierr2 = PetscFree7(localDiff,funcVal,interpolant,coords,fegeom.detJ,fegeom.J,fegeom.invJ);CHKERRQ(ierr2); 1390e735a8a9SMatthew G. Knepley CHKERRQ(ierr); 1391e735a8a9SMatthew G. Knepley } 1392ca3d3a14SMatthew G. Knepley if (transform) {ierr = DMPlexBasisTransformApply_Internal(dm, &coords[coordDim*q], PETSC_FALSE, Nc, funcVal, funcVal, dm->transformCtx);CHKERRQ(ierr);} 13932a4e142eSMatthew G. Knepley if (id == PETSCFE_CLASSID) {ierr = PetscFEInterpolate_Static((PetscFE) obj, &x[fieldOffset], &qgeom, q, interpolant);CHKERRQ(ierr);} 139415496722SMatthew G. Knepley else if (id == PETSCFV_CLASSID) {ierr = PetscFVInterpolate_Static((PetscFV) obj, &x[fieldOffset], q, interpolant);CHKERRQ(ierr);} 1395ff1e0c32SBarry Smith else SETERRQ1(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %D", field); 139615496722SMatthew G. Knepley for (fc = 0; fc < Nc; ++fc) { 1397beaa55a6SMatthew G. Knepley const PetscReal wt = quadWeights[q*qNc+(qNc == 1 ? 0 : qc+fc)]; 1398ff1e0c32SBarry Smith if (debug) {ierr = PetscPrintf(PETSC_COMM_SELF, " elem %D field %D,%D point %g %g %g diff %g\n", c, field, fc, (double)(coordDim > 0 ? coords[coordDim*q] : 0.), (double)(coordDim > 1 ? coords[coordDim*q+1] : 0.),(double)(coordDim > 2 ? coords[coordDim*q+2] : 0.), (double)(PetscSqr(PetscRealPart(interpolant[fc] - funcVal[fc]))*wt*fegeom.detJ[q]));CHKERRQ(ierr);} 13994bee2e38SMatthew G. Knepley elemDiff += PetscSqr(PetscRealPart(interpolant[fc] - funcVal[fc]))*wt*fegeom.detJ[q]; 140073d901b8SMatthew G. Knepley } 140173d901b8SMatthew G. Knepley } 1402beaa55a6SMatthew G. Knepley fieldOffset += Nb; 14039c3cf19fSMatthew G. Knepley qc += Nc; 140473d901b8SMatthew G. Knepley localDiff[field] += elemDiff; 1405ff1e0c32SBarry Smith if (debug) {ierr = PetscPrintf(PETSC_COMM_SELF, " elem %D field %D cum diff %g\n", c, field, (double)localDiff[field]);CHKERRQ(ierr);} 140673d901b8SMatthew G. Knepley } 140773d901b8SMatthew G. Knepley ierr = DMPlexVecRestoreClosure(dm, NULL, localX, c, NULL, &x);CHKERRQ(ierr); 140873d901b8SMatthew G. Knepley } 140973d901b8SMatthew G. Knepley ierr = DMRestoreLocalVector(dm, &localX);CHKERRQ(ierr); 1410b2566f29SBarry Smith ierr = MPIU_Allreduce(localDiff, diff, numFields, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)dm));CHKERRQ(ierr); 141173d901b8SMatthew G. Knepley for (field = 0; field < numFields; ++field) diff[field] = PetscSqrtReal(diff[field]); 14122a4e142eSMatthew G. Knepley ierr = PetscFree7(localDiff,funcVal,interpolant,coords,fegeom.detJ,fegeom.J,fegeom.invJ);CHKERRQ(ierr); 141373d901b8SMatthew G. Knepley PetscFunctionReturn(0); 141473d901b8SMatthew G. Knepley } 141573d901b8SMatthew G. Knepley 1416e729f68cSMatthew G. Knepley /*@C 1417e729f68cSMatthew G. Knepley DMPlexComputeL2DiffVec - This function computes the cellwise L_2 difference between a function u and an FEM interpolant solution u_h, and stores it in a Vec. 1418e729f68cSMatthew G. Knepley 1419d083f849SBarry Smith Collective on dm 1420c0f8e1fdSMatthew G. Knepley 1421e729f68cSMatthew G. Knepley Input Parameters: 1422e729f68cSMatthew G. Knepley + dm - The DM 14230163fd50SMatthew G. Knepley . time - The time 1424ca3eba1bSToby Isaac . funcs - The functions to evaluate for each field component: NULL means that component does not contribute to error calculation 1425e729f68cSMatthew G. Knepley . ctxs - Optional array of contexts to pass to each function, or NULL. 1426e729f68cSMatthew G. Knepley - X - The coefficient vector u_h 1427e729f68cSMatthew G. Knepley 1428e729f68cSMatthew G. Knepley Output Parameter: 1429e729f68cSMatthew G. Knepley . D - A Vec which holds the difference ||u - u_h||_2 for each cell 1430e729f68cSMatthew G. Knepley 1431e729f68cSMatthew G. Knepley Level: developer 1432e729f68cSMatthew G. Knepley 1433b698f381SToby Isaac .seealso: DMProjectFunction(), DMComputeL2Diff(), DMPlexComputeL2FieldDiff(), DMComputeL2GradientDiff() 1434e729f68cSMatthew G. Knepley @*/ 14350163fd50SMatthew G. Knepley PetscErrorCode DMPlexComputeL2DiffVec(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal [], PetscInt, PetscScalar *, void *), void **ctxs, Vec X, Vec D) 1436e729f68cSMatthew G. Knepley { 1437e729f68cSMatthew G. Knepley PetscSection section; 1438e729f68cSMatthew G. Knepley PetscQuadrature quad; 1439e729f68cSMatthew G. Knepley Vec localX; 14404bee2e38SMatthew G. Knepley PetscFEGeom fegeom; 1441e729f68cSMatthew G. Knepley PetscScalar *funcVal, *interpolant; 14424bee2e38SMatthew G. Knepley PetscReal *coords; 1443e729f68cSMatthew G. Knepley const PetscReal *quadPoints, *quadWeights; 1444485ad865SMatthew G. Knepley PetscInt dim, coordDim, numFields, numComponents = 0, qNc, Nq, cStart, cEnd, c, field, fieldOffset; 1445e729f68cSMatthew G. Knepley PetscErrorCode ierr; 1446e729f68cSMatthew G. Knepley 1447e729f68cSMatthew G. Knepley PetscFunctionBegin; 1448e729f68cSMatthew G. Knepley ierr = VecSet(D, 0.0);CHKERRQ(ierr); 1449e729f68cSMatthew G. Knepley ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr); 14507318780aSToby Isaac ierr = DMGetCoordinateDim(dm, &coordDim);CHKERRQ(ierr); 145192fd8e1eSJed Brown ierr = DMGetLocalSection(dm, §ion);CHKERRQ(ierr); 1452e729f68cSMatthew G. Knepley ierr = PetscSectionGetNumFields(section, &numFields);CHKERRQ(ierr); 1453e729f68cSMatthew G. Knepley ierr = DMGetLocalVector(dm, &localX);CHKERRQ(ierr); 1454bdd6f66aSToby Isaac ierr = DMProjectFunctionLocal(dm, time, funcs, ctxs, INSERT_BC_VALUES, localX);CHKERRQ(ierr); 1455e729f68cSMatthew G. Knepley ierr = DMGlobalToLocalBegin(dm, X, INSERT_VALUES, localX);CHKERRQ(ierr); 1456e729f68cSMatthew G. Knepley ierr = DMGlobalToLocalEnd(dm, X, INSERT_VALUES, localX);CHKERRQ(ierr); 1457e729f68cSMatthew G. Knepley for (field = 0; field < numFields; ++field) { 1458e729f68cSMatthew G. Knepley PetscObject obj; 1459e729f68cSMatthew G. Knepley PetscClassId id; 1460e729f68cSMatthew G. Knepley PetscInt Nc; 1461e729f68cSMatthew G. Knepley 146244a7f3ddSMatthew G. Knepley ierr = DMGetField(dm, field, NULL, &obj);CHKERRQ(ierr); 1463e729f68cSMatthew G. Knepley ierr = PetscObjectGetClassId(obj, &id);CHKERRQ(ierr); 1464e729f68cSMatthew G. Knepley if (id == PETSCFE_CLASSID) { 1465e729f68cSMatthew G. Knepley PetscFE fe = (PetscFE) obj; 1466e729f68cSMatthew G. Knepley 1467e729f68cSMatthew G. Knepley ierr = PetscFEGetQuadrature(fe, &quad);CHKERRQ(ierr); 1468e729f68cSMatthew G. Knepley ierr = PetscFEGetNumComponents(fe, &Nc);CHKERRQ(ierr); 1469e729f68cSMatthew G. Knepley } else if (id == PETSCFV_CLASSID) { 1470e729f68cSMatthew G. Knepley PetscFV fv = (PetscFV) obj; 1471e729f68cSMatthew G. Knepley 1472e729f68cSMatthew G. Knepley ierr = PetscFVGetQuadrature(fv, &quad);CHKERRQ(ierr); 1473e729f68cSMatthew G. Knepley ierr = PetscFVGetNumComponents(fv, &Nc);CHKERRQ(ierr); 1474ff1e0c32SBarry Smith } else SETERRQ1(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %D", field); 1475e729f68cSMatthew G. Knepley numComponents += Nc; 1476e729f68cSMatthew G. Knepley } 14779c3cf19fSMatthew G. Knepley ierr = PetscQuadratureGetData(quad, NULL, &qNc, &Nq, &quadPoints, &quadWeights);CHKERRQ(ierr); 1478beaa55a6SMatthew G. Knepley if ((qNc != 1) && (qNc != numComponents)) SETERRQ2(PetscObjectComm((PetscObject) dm), PETSC_ERR_ARG_SIZ, "Quadrature components %D != %D field components", qNc, numComponents); 14792a4e142eSMatthew G. Knepley ierr = PetscMalloc6(numComponents,&funcVal,numComponents,&interpolant,coordDim*Nq,&coords,Nq,&fegeom.detJ,coordDim*coordDim*Nq,&fegeom.J,coordDim*coordDim*Nq,&fegeom.invJ);CHKERRQ(ierr); 1480*412e9a14SMatthew G. Knepley ierr = DMPlexGetSimplexOrBoxCells(dm, 0, &cStart, &cEnd);CHKERRQ(ierr); 1481e729f68cSMatthew G. Knepley for (c = cStart; c < cEnd; ++c) { 1482e729f68cSMatthew G. Knepley PetscScalar *x = NULL; 14836f288a59SMatthew G. Knepley PetscScalar elemDiff = 0.0; 14849c3cf19fSMatthew G. Knepley PetscInt qc = 0; 1485e729f68cSMatthew G. Knepley 14862a4e142eSMatthew G. Knepley ierr = DMPlexComputeCellGeometryFEM(dm, c, quad, coords, fegeom.J, fegeom.invJ, fegeom.detJ);CHKERRQ(ierr); 1487e729f68cSMatthew G. Knepley ierr = DMPlexVecGetClosure(dm, NULL, localX, c, NULL, &x);CHKERRQ(ierr); 1488e729f68cSMatthew G. Knepley 1489e729f68cSMatthew G. Knepley for (field = 0, fieldOffset = 0; field < numFields; ++field) { 1490e729f68cSMatthew G. Knepley PetscObject obj; 1491e729f68cSMatthew G. Knepley PetscClassId id; 1492e729f68cSMatthew G. Knepley void * const ctx = ctxs ? ctxs[field] : NULL; 1493e729f68cSMatthew G. Knepley PetscInt Nb, Nc, q, fc; 1494e729f68cSMatthew G. Knepley 149544a7f3ddSMatthew G. Knepley ierr = DMGetField(dm, field, NULL, &obj);CHKERRQ(ierr); 1496e729f68cSMatthew G. Knepley ierr = PetscObjectGetClassId(obj, &id);CHKERRQ(ierr); 1497e729f68cSMatthew G. Knepley if (id == PETSCFE_CLASSID) {ierr = PetscFEGetNumComponents((PetscFE) obj, &Nc);CHKERRQ(ierr);ierr = PetscFEGetDimension((PetscFE) obj, &Nb);CHKERRQ(ierr);} 1498e729f68cSMatthew G. Knepley else if (id == PETSCFV_CLASSID) {ierr = PetscFVGetNumComponents((PetscFV) obj, &Nc);CHKERRQ(ierr);Nb = 1;} 1499ff1e0c32SBarry Smith else SETERRQ1(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %D", field); 150023f34ed2SToby Isaac if (funcs[field]) { 15017318780aSToby Isaac for (q = 0; q < Nq; ++q) { 15022a4e142eSMatthew G. Knepley PetscFEGeom qgeom; 15032a4e142eSMatthew G. Knepley 15042a4e142eSMatthew G. Knepley qgeom.dimEmbed = fegeom.dimEmbed; 15052a4e142eSMatthew G. Knepley qgeom.J = &fegeom.J[q*coordDim*coordDim]; 15062a4e142eSMatthew G. Knepley qgeom.invJ = &fegeom.invJ[q*coordDim*coordDim]; 15072a4e142eSMatthew G. Knepley qgeom.detJ = &fegeom.detJ[q]; 15084bee2e38SMatthew G. Knepley if (fegeom.detJ[q] <= 0.0) SETERRQ3(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Invalid determinant %g for element %D, quadrature points %D", (double)fegeom.detJ[q], c, q); 1509274e8aaeSMatthew G. Knepley ierr = (*funcs[field])(coordDim, time, &coords[q*coordDim], Nc, funcVal, ctx); 1510e735a8a9SMatthew G. Knepley if (ierr) { 1511e735a8a9SMatthew G. Knepley PetscErrorCode ierr2; 1512e735a8a9SMatthew G. Knepley ierr2 = DMPlexVecRestoreClosure(dm, NULL, localX, c, NULL, &x);CHKERRQ(ierr2); 15132a4e142eSMatthew G. Knepley ierr2 = PetscFree6(funcVal,interpolant,coords,fegeom.detJ,fegeom.J,fegeom.invJ);CHKERRQ(ierr2); 1514e735a8a9SMatthew G. Knepley ierr2 = DMRestoreLocalVector(dm, &localX);CHKERRQ(ierr2); 1515e735a8a9SMatthew G. Knepley CHKERRQ(ierr); 1516e735a8a9SMatthew G. Knepley } 15172a4e142eSMatthew G. Knepley if (id == PETSCFE_CLASSID) {ierr = PetscFEInterpolate_Static((PetscFE) obj, &x[fieldOffset], &qgeom, q, interpolant);CHKERRQ(ierr);} 1518e729f68cSMatthew G. Knepley else if (id == PETSCFV_CLASSID) {ierr = PetscFVInterpolate_Static((PetscFV) obj, &x[fieldOffset], q, interpolant);CHKERRQ(ierr);} 1519ff1e0c32SBarry Smith else SETERRQ1(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %D", field); 1520e729f68cSMatthew G. Knepley for (fc = 0; fc < Nc; ++fc) { 1521beaa55a6SMatthew G. Knepley const PetscReal wt = quadWeights[q*qNc+(qNc == 1 ? 0 : qc+fc)]; 15224bee2e38SMatthew G. Knepley elemDiff += PetscSqr(PetscRealPart(interpolant[fc] - funcVal[fc]))*wt*fegeom.detJ[q]; 1523e729f68cSMatthew G. Knepley } 1524e729f68cSMatthew G. Knepley } 152523f34ed2SToby Isaac } 1526beaa55a6SMatthew G. Knepley fieldOffset += Nb; 15279c3cf19fSMatthew G. Knepley qc += Nc; 1528e729f68cSMatthew G. Knepley } 1529e729f68cSMatthew G. Knepley ierr = DMPlexVecRestoreClosure(dm, NULL, localX, c, NULL, &x);CHKERRQ(ierr); 153023f34ed2SToby Isaac ierr = VecSetValue(D, c - cStart, elemDiff, INSERT_VALUES);CHKERRQ(ierr); 1531e729f68cSMatthew G. Knepley } 15322a4e142eSMatthew G. Knepley ierr = PetscFree6(funcVal,interpolant,coords,fegeom.detJ,fegeom.J,fegeom.invJ);CHKERRQ(ierr); 1533e729f68cSMatthew G. Knepley ierr = DMRestoreLocalVector(dm, &localX);CHKERRQ(ierr); 1534e729f68cSMatthew G. Knepley ierr = VecSqrtAbs(D);CHKERRQ(ierr); 1535e729f68cSMatthew G. Knepley PetscFunctionReturn(0); 1536e729f68cSMatthew G. Knepley } 1537e729f68cSMatthew G. Knepley 15381555c271SMatthew G. Knepley /*@C 15391555c271SMatthew G. Knepley DMPlexComputeGradientClementInterpolant - This function computes the L2 projection of the cellwise gradient of a function u onto P1, and stores it in a Vec. 15401555c271SMatthew G. Knepley 1541d083f849SBarry Smith Collective on dm 1542c0f8e1fdSMatthew G. Knepley 15431555c271SMatthew G. Knepley Input Parameters: 15441555c271SMatthew G. Knepley + dm - The DM 15451555c271SMatthew G. Knepley - LocX - The coefficient vector u_h 15461555c271SMatthew G. Knepley 15471555c271SMatthew G. Knepley Output Parameter: 15481555c271SMatthew G. Knepley . locC - A Vec which holds the Clement interpolant of the gradient 15491555c271SMatthew G. Knepley 155095452b02SPatrick Sanan Notes: 155195452b02SPatrick Sanan Add citation to (Clement, 1975) and definition of the interpolant 15521555c271SMatthew G. Knepley \nabla u_h(v_i) = \sum_{T_i \in support(v_i)} |T_i| \nabla u_h(T_i) / \sum_{T_i \in support(v_i)} |T_i| where |T_i| is the cell volume 15531555c271SMatthew G. Knepley 15541555c271SMatthew G. Knepley Level: developer 15551555c271SMatthew G. Knepley 15561555c271SMatthew G. Knepley .seealso: DMProjectFunction(), DMComputeL2Diff(), DMPlexComputeL2FieldDiff(), DMComputeL2GradientDiff() 15571555c271SMatthew G. Knepley @*/ 15581555c271SMatthew G. Knepley PetscErrorCode DMPlexComputeGradientClementInterpolant(DM dm, Vec locX, Vec locC) 15591555c271SMatthew G. Knepley { 1560db1066baSMatthew G. Knepley DM_Plex *mesh = (DM_Plex *) dm->data; 1561db1066baSMatthew G. Knepley PetscInt debug = mesh->printFEM; 15621555c271SMatthew G. Knepley DM dmC; 15631555c271SMatthew G. Knepley PetscSection section; 15641555c271SMatthew G. Knepley PetscQuadrature quad; 15651555c271SMatthew G. Knepley PetscScalar *interpolant, *gradsum; 15664bee2e38SMatthew G. Knepley PetscFEGeom fegeom; 15674bee2e38SMatthew G. Knepley PetscReal *coords; 15681555c271SMatthew G. Knepley const PetscReal *quadPoints, *quadWeights; 1569485ad865SMatthew G. Knepley PetscInt dim, coordDim, numFields, numComponents = 0, qNc, Nq, cStart, cEnd, vStart, vEnd, v, field, fieldOffset; 15701555c271SMatthew G. Knepley PetscErrorCode ierr; 15711555c271SMatthew G. Knepley 15721555c271SMatthew G. Knepley PetscFunctionBegin; 15731555c271SMatthew G. Knepley ierr = VecGetDM(locC, &dmC);CHKERRQ(ierr); 15741555c271SMatthew G. Knepley ierr = VecSet(locC, 0.0);CHKERRQ(ierr); 15751555c271SMatthew G. Knepley ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr); 15761555c271SMatthew G. Knepley ierr = DMGetCoordinateDim(dm, &coordDim);CHKERRQ(ierr); 15774bee2e38SMatthew G. Knepley fegeom.dimEmbed = coordDim; 157892fd8e1eSJed Brown ierr = DMGetLocalSection(dm, §ion);CHKERRQ(ierr); 15791555c271SMatthew G. Knepley ierr = PetscSectionGetNumFields(section, &numFields);CHKERRQ(ierr); 15801555c271SMatthew G. Knepley for (field = 0; field < numFields; ++field) { 15811555c271SMatthew G. Knepley PetscObject obj; 15821555c271SMatthew G. Knepley PetscClassId id; 15831555c271SMatthew G. Knepley PetscInt Nc; 15841555c271SMatthew G. Knepley 158544a7f3ddSMatthew G. Knepley ierr = DMGetField(dm, field, NULL, &obj);CHKERRQ(ierr); 15861555c271SMatthew G. Knepley ierr = PetscObjectGetClassId(obj, &id);CHKERRQ(ierr); 15871555c271SMatthew G. Knepley if (id == PETSCFE_CLASSID) { 15881555c271SMatthew G. Knepley PetscFE fe = (PetscFE) obj; 15891555c271SMatthew G. Knepley 15901555c271SMatthew G. Knepley ierr = PetscFEGetQuadrature(fe, &quad);CHKERRQ(ierr); 15911555c271SMatthew G. Knepley ierr = PetscFEGetNumComponents(fe, &Nc);CHKERRQ(ierr); 15921555c271SMatthew G. Knepley } else if (id == PETSCFV_CLASSID) { 15931555c271SMatthew G. Knepley PetscFV fv = (PetscFV) obj; 15941555c271SMatthew G. Knepley 15951555c271SMatthew G. Knepley ierr = PetscFVGetQuadrature(fv, &quad);CHKERRQ(ierr); 15961555c271SMatthew G. Knepley ierr = PetscFVGetNumComponents(fv, &Nc);CHKERRQ(ierr); 1597ff1e0c32SBarry Smith } else SETERRQ1(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %D", field); 15981555c271SMatthew G. Knepley numComponents += Nc; 15991555c271SMatthew G. Knepley } 16001555c271SMatthew G. Knepley ierr = PetscQuadratureGetData(quad, NULL, &qNc, &Nq, &quadPoints, &quadWeights);CHKERRQ(ierr); 16011555c271SMatthew G. Knepley if ((qNc != 1) && (qNc != numComponents)) SETERRQ2(PetscObjectComm((PetscObject) dm), PETSC_ERR_ARG_SIZ, "Quadrature components %D != %D field components", qNc, numComponents); 16024bee2e38SMatthew G. Knepley ierr = PetscMalloc6(coordDim*numComponents*2,&gradsum,coordDim*numComponents,&interpolant,coordDim*Nq,&coords,Nq,&fegeom.detJ,coordDim*coordDim*Nq,&fegeom.J,coordDim*coordDim*Nq,&fegeom.invJ);CHKERRQ(ierr); 16031555c271SMatthew G. Knepley ierr = DMPlexGetDepthStratum(dm, 0, &vStart, &vEnd);CHKERRQ(ierr); 1604*412e9a14SMatthew G. Knepley ierr = DMPlexGetSimplexOrBoxCells(dm, 0, &cStart, &cEnd);CHKERRQ(ierr); 16051555c271SMatthew G. Knepley for (v = vStart; v < vEnd; ++v) { 16061555c271SMatthew G. Knepley PetscScalar volsum = 0.0; 16071555c271SMatthew G. Knepley PetscInt *star = NULL; 16081555c271SMatthew G. Knepley PetscInt starSize, st, d, fc; 16091555c271SMatthew G. Knepley 1610580bdb30SBarry Smith ierr = PetscArrayzero(gradsum, coordDim*numComponents);CHKERRQ(ierr); 16111555c271SMatthew G. Knepley ierr = DMPlexGetTransitiveClosure(dm, v, PETSC_FALSE, &starSize, &star);CHKERRQ(ierr); 16121555c271SMatthew G. Knepley for (st = 0; st < starSize*2; st += 2) { 16131555c271SMatthew G. Knepley const PetscInt cell = star[st]; 16141555c271SMatthew G. Knepley PetscScalar *grad = &gradsum[coordDim*numComponents]; 16151555c271SMatthew G. Knepley PetscScalar *x = NULL; 16161555c271SMatthew G. Knepley PetscReal vol = 0.0; 16171555c271SMatthew G. Knepley 16181555c271SMatthew G. Knepley if ((cell < cStart) || (cell >= cEnd)) continue; 16194bee2e38SMatthew G. Knepley ierr = DMPlexComputeCellGeometryFEM(dm, cell, quad, coords, fegeom.J, fegeom.invJ, fegeom.detJ);CHKERRQ(ierr); 16201555c271SMatthew G. Knepley ierr = DMPlexVecGetClosure(dm, NULL, locX, cell, NULL, &x);CHKERRQ(ierr); 16211555c271SMatthew G. Knepley for (field = 0, fieldOffset = 0; field < numFields; ++field) { 16221555c271SMatthew G. Knepley PetscObject obj; 16231555c271SMatthew G. Knepley PetscClassId id; 16241555c271SMatthew G. Knepley PetscInt Nb, Nc, q, qc = 0; 16251555c271SMatthew G. Knepley 1626580bdb30SBarry Smith ierr = PetscArrayzero(grad, coordDim*numComponents);CHKERRQ(ierr); 162744a7f3ddSMatthew G. Knepley ierr = DMGetField(dm, field, NULL, &obj);CHKERRQ(ierr); 16281555c271SMatthew G. Knepley ierr = PetscObjectGetClassId(obj, &id);CHKERRQ(ierr); 16291555c271SMatthew G. Knepley if (id == PETSCFE_CLASSID) {ierr = PetscFEGetNumComponents((PetscFE) obj, &Nc);CHKERRQ(ierr);ierr = PetscFEGetDimension((PetscFE) obj, &Nb);CHKERRQ(ierr);} 16301555c271SMatthew G. Knepley else if (id == PETSCFV_CLASSID) {ierr = PetscFVGetNumComponents((PetscFV) obj, &Nc);CHKERRQ(ierr);Nb = 1;} 1631ff1e0c32SBarry Smith else SETERRQ1(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %D", field); 16321555c271SMatthew G. Knepley for (q = 0; q < Nq; ++q) { 16332a4e142eSMatthew G. Knepley PetscFEGeom qgeom; 16342a4e142eSMatthew G. Knepley 16352a4e142eSMatthew G. Knepley qgeom.dimEmbed = fegeom.dimEmbed; 16362a4e142eSMatthew G. Knepley qgeom.J = &fegeom.J[q*coordDim*coordDim]; 16372a4e142eSMatthew G. Knepley qgeom.invJ = &fegeom.invJ[q*coordDim*coordDim]; 16382a4e142eSMatthew G. Knepley qgeom.detJ = &fegeom.detJ[q]; 16394bee2e38SMatthew G. Knepley if (fegeom.detJ[q] <= 0.0) SETERRQ3(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Invalid determinant %g for element %D, quadrature points %D", (double)fegeom.detJ[q], cell, q); 16401555c271SMatthew G. Knepley if (ierr) { 16411555c271SMatthew G. Knepley PetscErrorCode ierr2; 16421555c271SMatthew G. Knepley ierr2 = DMPlexVecRestoreClosure(dm, NULL, locX, cell, NULL, &x);CHKERRQ(ierr2); 16431555c271SMatthew G. Knepley ierr2 = DMPlexRestoreTransitiveClosure(dm, v, PETSC_FALSE, &starSize, &star);CHKERRQ(ierr2); 16444bee2e38SMatthew G. Knepley ierr2 = PetscFree6(gradsum,interpolant,coords,fegeom.detJ,fegeom.J,fegeom.invJ);CHKERRQ(ierr2); 16451555c271SMatthew G. Knepley CHKERRQ(ierr); 16461555c271SMatthew G. Knepley } 16472a4e142eSMatthew G. Knepley if (id == PETSCFE_CLASSID) {ierr = PetscFEInterpolateGradient_Static((PetscFE) obj, &x[fieldOffset], &qgeom, q, interpolant);CHKERRQ(ierr);} 1648ff1e0c32SBarry Smith else SETERRQ1(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %D", field); 16491555c271SMatthew G. Knepley for (fc = 0; fc < Nc; ++fc) { 16501555c271SMatthew G. Knepley const PetscReal wt = quadWeights[q*qNc+qc+fc]; 16511555c271SMatthew G. Knepley 16524bee2e38SMatthew G. Knepley for (d = 0; d < coordDim; ++d) grad[fc*coordDim+d] += interpolant[fc*dim+d]*wt*fegeom.detJ[q]; 16531555c271SMatthew G. Knepley } 16544bee2e38SMatthew G. Knepley vol += quadWeights[q*qNc]*fegeom.detJ[q]; 16551555c271SMatthew G. Knepley } 16561555c271SMatthew G. Knepley fieldOffset += Nb; 16571555c271SMatthew G. Knepley qc += Nc; 16581555c271SMatthew G. Knepley } 16591555c271SMatthew G. Knepley ierr = DMPlexVecRestoreClosure(dm, NULL, locX, cell, NULL, &x);CHKERRQ(ierr); 1660f8527842SMatthew G. Knepley for (fc = 0; fc < numComponents; ++fc) { 1661f8527842SMatthew G. Knepley for (d = 0; d < coordDim; ++d) { 1662f8527842SMatthew G. Knepley gradsum[fc*coordDim+d] += grad[fc*coordDim+d]; 1663f8527842SMatthew G. Knepley } 1664f8527842SMatthew G. Knepley } 1665f8527842SMatthew G. Knepley volsum += vol; 1666db1066baSMatthew G. Knepley if (debug) { 16676d20ae03SJed Brown ierr = PetscPrintf(PETSC_COMM_SELF, "Cell %D gradient: [", cell);CHKERRQ(ierr); 16681555c271SMatthew G. Knepley for (fc = 0; fc < numComponents; ++fc) { 16691555c271SMatthew G. Knepley for (d = 0; d < coordDim; ++d) { 16701555c271SMatthew G. Knepley if (fc || d > 0) {ierr = PetscPrintf(PETSC_COMM_SELF, ", ");CHKERRQ(ierr);} 16716d20ae03SJed Brown ierr = PetscPrintf(PETSC_COMM_SELF, "%g", (double)PetscRealPart(grad[fc*coordDim+d]));CHKERRQ(ierr); 16721555c271SMatthew G. Knepley } 16731555c271SMatthew G. Knepley } 16741555c271SMatthew G. Knepley ierr = PetscPrintf(PETSC_COMM_SELF, "]\n");CHKERRQ(ierr); 1675db1066baSMatthew G. Knepley } 16761555c271SMatthew G. Knepley } 16771555c271SMatthew G. Knepley for (fc = 0; fc < numComponents; ++fc) { 16781555c271SMatthew G. Knepley for (d = 0; d < coordDim; ++d) gradsum[fc*coordDim+d] /= volsum; 16791555c271SMatthew G. Knepley } 16801555c271SMatthew G. Knepley ierr = DMPlexRestoreTransitiveClosure(dm, v, PETSC_FALSE, &starSize, &star);CHKERRQ(ierr); 16811555c271SMatthew G. Knepley ierr = DMPlexVecSetClosure(dmC, NULL, locC, v, gradsum, INSERT_VALUES);CHKERRQ(ierr); 16821555c271SMatthew G. Knepley } 16834bee2e38SMatthew G. Knepley ierr = PetscFree6(gradsum,interpolant,coords,fegeom.detJ,fegeom.J,fegeom.invJ);CHKERRQ(ierr); 16841555c271SMatthew G. Knepley PetscFunctionReturn(0); 16851555c271SMatthew G. Knepley } 16861555c271SMatthew G. Knepley 1687338f77d5SMatthew G. Knepley static PetscErrorCode DMPlexComputeIntegral_Internal(DM dm, Vec X, PetscInt cStart, PetscInt cEnd, PetscScalar *cintegral, void *user) 168873d901b8SMatthew G. Knepley { 1689338f77d5SMatthew G. Knepley DM dmAux = NULL; 169061aaff12SToby Isaac PetscDS prob, probAux = NULL; 169173d901b8SMatthew G. Knepley PetscSection section, sectionAux; 1692338f77d5SMatthew G. Knepley Vec locX, locA; 1693c330f8ffSToby Isaac PetscInt dim, numCells = cEnd - cStart, c, f; 1694c330f8ffSToby Isaac PetscBool useFVM = PETSC_FALSE; 1695338f77d5SMatthew G. Knepley /* DS */ 1696338f77d5SMatthew G. Knepley PetscInt Nf, totDim, *uOff, *uOff_x, numConstants; 1697338f77d5SMatthew G. Knepley PetscInt NfAux, totDimAux, *aOff; 1698338f77d5SMatthew G. Knepley PetscScalar *u, *a; 1699338f77d5SMatthew G. Knepley const PetscScalar *constants; 1700338f77d5SMatthew G. Knepley /* Geometry */ 1701c330f8ffSToby Isaac PetscFEGeom *cgeomFEM; 1702338f77d5SMatthew G. Knepley DM dmGrad; 1703c330f8ffSToby Isaac PetscQuadrature affineQuad = NULL; 1704338f77d5SMatthew G. Knepley Vec cellGeometryFVM = NULL, faceGeometryFVM = NULL, locGrad = NULL; 1705b5a3613cSMatthew G. Knepley PetscFVCellGeom *cgeomFVM; 1706338f77d5SMatthew G. Knepley const PetscScalar *lgrad; 1707b7260050SToby Isaac PetscInt maxDegree; 1708c330f8ffSToby Isaac DMField coordField; 1709c330f8ffSToby Isaac IS cellIS; 171073d901b8SMatthew G. Knepley PetscErrorCode ierr; 171173d901b8SMatthew G. Knepley 171273d901b8SMatthew G. Knepley PetscFunctionBegin; 1713338f77d5SMatthew G. Knepley ierr = DMGetDS(dm, &prob);CHKERRQ(ierr); 1714c73cfb54SMatthew G. Knepley ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr); 171592fd8e1eSJed Brown ierr = DMGetLocalSection(dm, §ion);CHKERRQ(ierr); 171673d901b8SMatthew G. Knepley ierr = PetscSectionGetNumFields(section, &Nf);CHKERRQ(ierr); 1717338f77d5SMatthew G. Knepley /* Determine which discretizations we have */ 1718b5a3613cSMatthew G. Knepley for (f = 0; f < Nf; ++f) { 1719b5a3613cSMatthew G. Knepley PetscObject obj; 1720b5a3613cSMatthew G. Knepley PetscClassId id; 1721b5a3613cSMatthew G. Knepley 1722b5a3613cSMatthew G. Knepley ierr = PetscDSGetDiscretization(prob, f, &obj);CHKERRQ(ierr); 1723b5a3613cSMatthew G. Knepley ierr = PetscObjectGetClassId(obj, &id);CHKERRQ(ierr); 1724338f77d5SMatthew G. Knepley if (id == PETSCFV_CLASSID) useFVM = PETSC_TRUE; 1725338f77d5SMatthew G. Knepley } 1726338f77d5SMatthew G. Knepley /* Get local solution with boundary values */ 1727338f77d5SMatthew G. Knepley ierr = DMGetLocalVector(dm, &locX);CHKERRQ(ierr); 1728338f77d5SMatthew G. Knepley ierr = DMPlexInsertBoundaryValues(dm, PETSC_TRUE, locX, 0.0, NULL, NULL, NULL);CHKERRQ(ierr); 1729338f77d5SMatthew G. Knepley ierr = DMGlobalToLocalBegin(dm, X, INSERT_VALUES, locX);CHKERRQ(ierr); 1730338f77d5SMatthew G. Knepley ierr = DMGlobalToLocalEnd(dm, X, INSERT_VALUES, locX);CHKERRQ(ierr); 1731338f77d5SMatthew G. Knepley /* Read DS information */ 1732338f77d5SMatthew G. Knepley ierr = PetscDSGetTotalDimension(prob, &totDim);CHKERRQ(ierr); 1733338f77d5SMatthew G. Knepley ierr = PetscDSGetComponentOffsets(prob, &uOff);CHKERRQ(ierr); 1734338f77d5SMatthew G. Knepley ierr = PetscDSGetComponentDerivativeOffsets(prob, &uOff_x);CHKERRQ(ierr); 1735c330f8ffSToby Isaac ierr = ISCreateStride(PETSC_COMM_SELF,numCells,cStart,1,&cellIS);CHKERRQ(ierr); 1736338f77d5SMatthew G. Knepley ierr = PetscDSGetConstants(prob, &numConstants, &constants);CHKERRQ(ierr); 1737338f77d5SMatthew G. Knepley /* Read Auxiliary DS information */ 1738338f77d5SMatthew G. Knepley ierr = PetscObjectQuery((PetscObject) dm, "dmAux", (PetscObject *) &dmAux);CHKERRQ(ierr); 1739338f77d5SMatthew G. Knepley ierr = PetscObjectQuery((PetscObject) dm, "A", (PetscObject *) &locA);CHKERRQ(ierr); 1740338f77d5SMatthew G. Knepley if (dmAux) { 1741338f77d5SMatthew G. Knepley ierr = DMGetDS(dmAux, &probAux);CHKERRQ(ierr); 1742338f77d5SMatthew G. Knepley ierr = PetscDSGetNumFields(probAux, &NfAux);CHKERRQ(ierr); 174392fd8e1eSJed Brown ierr = DMGetLocalSection(dmAux, §ionAux);CHKERRQ(ierr); 1744338f77d5SMatthew G. Knepley ierr = PetscDSGetTotalDimension(probAux, &totDimAux);CHKERRQ(ierr); 1745338f77d5SMatthew G. Knepley ierr = PetscDSGetComponentOffsets(probAux, &aOff);CHKERRQ(ierr); 1746338f77d5SMatthew G. Knepley } 1747338f77d5SMatthew G. Knepley /* Allocate data arrays */ 1748338f77d5SMatthew G. Knepley ierr = PetscCalloc1(numCells*totDim, &u);CHKERRQ(ierr); 1749338f77d5SMatthew G. Knepley if (dmAux) {ierr = PetscMalloc1(numCells*totDimAux, &a);CHKERRQ(ierr);} 1750338f77d5SMatthew G. Knepley /* Read out geometry */ 1751c330f8ffSToby Isaac ierr = DMGetCoordinateField(dm,&coordField);CHKERRQ(ierr); 1752b7260050SToby Isaac ierr = DMFieldGetDegree(coordField,cellIS,NULL,&maxDegree);CHKERRQ(ierr); 1753b7260050SToby Isaac if (maxDegree <= 1) { 1754c330f8ffSToby Isaac ierr = DMFieldCreateDefaultQuadrature(coordField,cellIS,&affineQuad);CHKERRQ(ierr); 1755c330f8ffSToby Isaac if (affineQuad) { 1756c330f8ffSToby Isaac ierr = DMFieldCreateFEGeom(coordField,cellIS,affineQuad,PETSC_FALSE,&cgeomFEM);CHKERRQ(ierr); 1757338f77d5SMatthew G. Knepley } 1758b5a3613cSMatthew G. Knepley } 1759b5a3613cSMatthew G. Knepley if (useFVM) { 1760338f77d5SMatthew G. Knepley PetscFV fv = NULL; 1761b5a3613cSMatthew G. Knepley Vec grad; 1762b5a3613cSMatthew G. Knepley PetscInt fStart, fEnd; 1763b5a3613cSMatthew G. Knepley PetscBool compGrad; 1764b5a3613cSMatthew G. Knepley 1765338f77d5SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 1766338f77d5SMatthew G. Knepley PetscObject obj; 1767338f77d5SMatthew G. Knepley PetscClassId id; 1768338f77d5SMatthew G. Knepley 1769338f77d5SMatthew G. Knepley ierr = PetscDSGetDiscretization(prob, f, &obj);CHKERRQ(ierr); 1770338f77d5SMatthew G. Knepley ierr = PetscObjectGetClassId(obj, &id);CHKERRQ(ierr); 1771338f77d5SMatthew G. Knepley if (id == PETSCFV_CLASSID) {fv = (PetscFV) obj; break;} 1772338f77d5SMatthew G. Knepley } 1773338f77d5SMatthew G. Knepley ierr = PetscFVGetComputeGradients(fv, &compGrad);CHKERRQ(ierr); 1774338f77d5SMatthew G. Knepley ierr = PetscFVSetComputeGradients(fv, PETSC_TRUE);CHKERRQ(ierr); 1775b5a3613cSMatthew G. Knepley ierr = DMPlexComputeGeometryFVM(dm, &cellGeometryFVM, &faceGeometryFVM);CHKERRQ(ierr); 1776338f77d5SMatthew G. Knepley ierr = DMPlexComputeGradientFVM(dm, fv, faceGeometryFVM, cellGeometryFVM, &dmGrad);CHKERRQ(ierr); 1777338f77d5SMatthew G. Knepley ierr = PetscFVSetComputeGradients(fv, compGrad);CHKERRQ(ierr); 1778b5a3613cSMatthew G. Knepley ierr = VecGetArrayRead(cellGeometryFVM, (const PetscScalar **) &cgeomFVM);CHKERRQ(ierr); 1779b5a3613cSMatthew G. Knepley /* Reconstruct and limit cell gradients */ 1780b5a3613cSMatthew G. Knepley ierr = DMPlexGetHeightStratum(dm, 1, &fStart, &fEnd);CHKERRQ(ierr); 1781b5a3613cSMatthew G. Knepley ierr = DMGetGlobalVector(dmGrad, &grad);CHKERRQ(ierr); 1782338f77d5SMatthew G. Knepley ierr = DMPlexReconstructGradients_Internal(dm, fv, fStart, fEnd, faceGeometryFVM, cellGeometryFVM, locX, grad);CHKERRQ(ierr); 1783b5a3613cSMatthew G. Knepley /* Communicate gradient values */ 1784b5a3613cSMatthew G. Knepley ierr = DMGetLocalVector(dmGrad, &locGrad);CHKERRQ(ierr); 1785b5a3613cSMatthew G. Knepley ierr = DMGlobalToLocalBegin(dmGrad, grad, INSERT_VALUES, locGrad);CHKERRQ(ierr); 1786b5a3613cSMatthew G. Knepley ierr = DMGlobalToLocalEnd(dmGrad, grad, INSERT_VALUES, locGrad);CHKERRQ(ierr); 1787b5a3613cSMatthew G. Knepley ierr = DMRestoreGlobalVector(dmGrad, &grad);CHKERRQ(ierr); 1788b5a3613cSMatthew G. Knepley /* Handle non-essential (e.g. outflow) boundary values */ 1789338f77d5SMatthew G. Knepley ierr = DMPlexInsertBoundaryValues(dm, PETSC_FALSE, locX, 0.0, faceGeometryFVM, cellGeometryFVM, locGrad);CHKERRQ(ierr); 1790b5a3613cSMatthew G. Knepley ierr = VecGetArrayRead(locGrad, &lgrad);CHKERRQ(ierr); 1791b5a3613cSMatthew G. Knepley } 1792338f77d5SMatthew G. Knepley /* Read out data from inputs */ 179373d901b8SMatthew G. Knepley for (c = cStart; c < cEnd; ++c) { 179473d901b8SMatthew G. Knepley PetscScalar *x = NULL; 179573d901b8SMatthew G. Knepley PetscInt i; 179673d901b8SMatthew G. Knepley 1797338f77d5SMatthew G. Knepley ierr = DMPlexVecGetClosure(dm, section, locX, c, NULL, &x);CHKERRQ(ierr); 17980f2d7e86SMatthew G. Knepley for (i = 0; i < totDim; ++i) u[c*totDim+i] = x[i]; 1799338f77d5SMatthew G. Knepley ierr = DMPlexVecRestoreClosure(dm, section, locX, c, NULL, &x);CHKERRQ(ierr); 180073d901b8SMatthew G. Knepley if (dmAux) { 1801338f77d5SMatthew G. Knepley ierr = DMPlexVecGetClosure(dmAux, sectionAux, locA, c, NULL, &x);CHKERRQ(ierr); 18020f2d7e86SMatthew G. Knepley for (i = 0; i < totDimAux; ++i) a[c*totDimAux+i] = x[i]; 1803338f77d5SMatthew G. Knepley ierr = DMPlexVecRestoreClosure(dmAux, sectionAux, locA, c, NULL, &x);CHKERRQ(ierr); 180473d901b8SMatthew G. Knepley } 180573d901b8SMatthew G. Knepley } 1806338f77d5SMatthew G. Knepley /* Do integration for each field */ 180773d901b8SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 1808c1f031eeSMatthew G. Knepley PetscObject obj; 1809c1f031eeSMatthew G. Knepley PetscClassId id; 1810c1f031eeSMatthew G. Knepley PetscInt numChunks, numBatches, batchSize, numBlocks, blockSize, Ne, Nr, offset; 181173d901b8SMatthew G. Knepley 1812c1f031eeSMatthew G. Knepley ierr = PetscDSGetDiscretization(prob, f, &obj);CHKERRQ(ierr); 1813c1f031eeSMatthew G. Knepley ierr = PetscObjectGetClassId(obj, &id);CHKERRQ(ierr); 1814c1f031eeSMatthew G. Knepley if (id == PETSCFE_CLASSID) { 1815c1f031eeSMatthew G. Knepley PetscFE fe = (PetscFE) obj; 1816c1f031eeSMatthew G. Knepley PetscQuadrature q; 1817c330f8ffSToby Isaac PetscFEGeom *chunkGeom = NULL; 1818c1f031eeSMatthew G. Knepley PetscInt Nq, Nb; 1819c1f031eeSMatthew G. Knepley 18200f2d7e86SMatthew G. Knepley ierr = PetscFEGetTileSizes(fe, NULL, &numBlocks, NULL, &numBatches);CHKERRQ(ierr); 1821c1f031eeSMatthew G. Knepley ierr = PetscFEGetQuadrature(fe, &q);CHKERRQ(ierr); 18229c3cf19fSMatthew G. Knepley ierr = PetscQuadratureGetData(q, NULL, NULL, &Nq, NULL, NULL);CHKERRQ(ierr); 1823c1f031eeSMatthew G. Knepley ierr = PetscFEGetDimension(fe, &Nb);CHKERRQ(ierr); 1824c1f031eeSMatthew G. Knepley blockSize = Nb*Nq; 182573d901b8SMatthew G. Knepley batchSize = numBlocks * blockSize; 18260f2d7e86SMatthew G. Knepley ierr = PetscFESetTileSizes(fe, blockSize, numBlocks, batchSize, numBatches);CHKERRQ(ierr); 182773d901b8SMatthew G. Knepley numChunks = numCells / (numBatches*batchSize); 182873d901b8SMatthew G. Knepley Ne = numChunks*numBatches*batchSize; 182973d901b8SMatthew G. Knepley Nr = numCells % (numBatches*batchSize); 183073d901b8SMatthew G. Knepley offset = numCells - Nr; 1831c330f8ffSToby Isaac if (!affineQuad) { 1832c330f8ffSToby Isaac ierr = DMFieldCreateFEGeom(coordField,cellIS,q,PETSC_FALSE,&cgeomFEM);CHKERRQ(ierr); 1833c330f8ffSToby Isaac } 1834c330f8ffSToby Isaac ierr = PetscFEGeomGetChunk(cgeomFEM,0,offset,&chunkGeom);CHKERRQ(ierr); 18354bee2e38SMatthew G. Knepley ierr = PetscFEIntegrate(prob, f, Ne, chunkGeom, u, probAux, a, cintegral);CHKERRQ(ierr); 1836c330f8ffSToby Isaac ierr = PetscFEGeomGetChunk(cgeomFEM,offset,numCells,&chunkGeom);CHKERRQ(ierr); 18374bee2e38SMatthew G. Knepley ierr = PetscFEIntegrate(prob, f, Nr, chunkGeom, &u[offset*totDim], probAux, &a[offset*totDimAux], &cintegral[offset*Nf]);CHKERRQ(ierr); 1838c330f8ffSToby Isaac ierr = PetscFEGeomRestoreChunk(cgeomFEM,offset,numCells,&chunkGeom);CHKERRQ(ierr); 1839c330f8ffSToby Isaac if (!affineQuad) { 1840c330f8ffSToby Isaac ierr = PetscFEGeomDestroy(&cgeomFEM);CHKERRQ(ierr); 1841c330f8ffSToby Isaac } 1842c1f031eeSMatthew G. Knepley } else if (id == PETSCFV_CLASSID) { 1843c1f031eeSMatthew G. Knepley PetscInt foff; 1844420e96edSMatthew G. Knepley PetscPointFunc obj_func; 1845b69edc29SMatthew G. Knepley PetscScalar lint; 1846c1f031eeSMatthew G. Knepley 1847c1f031eeSMatthew G. Knepley ierr = PetscDSGetObjective(prob, f, &obj_func);CHKERRQ(ierr); 1848c1f031eeSMatthew G. Knepley ierr = PetscDSGetFieldOffset(prob, f, &foff);CHKERRQ(ierr); 1849c1f031eeSMatthew G. Knepley if (obj_func) { 1850c1f031eeSMatthew G. Knepley for (c = 0; c < numCells; ++c) { 1851b5a3613cSMatthew G. Knepley PetscScalar *u_x; 1852b5a3613cSMatthew G. Knepley 1853b5a3613cSMatthew G. Knepley ierr = DMPlexPointLocalRead(dmGrad, c, lgrad, &u_x);CHKERRQ(ierr); 1854338f77d5SMatthew G. Knepley obj_func(dim, Nf, NfAux, uOff, uOff_x, &u[totDim*c+foff], NULL, u_x, aOff, NULL, &a[totDimAux*c], NULL, NULL, 0.0, cgeomFVM[c].centroid, numConstants, constants, &lint); 1855338f77d5SMatthew G. Knepley cintegral[c*Nf+f] += PetscRealPart(lint)*cgeomFVM[c].volume; 185673d901b8SMatthew G. Knepley } 1857c1f031eeSMatthew G. Knepley } 1858ff1e0c32SBarry Smith } else SETERRQ1(PetscObjectComm((PetscObject) dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %D", f); 1859c1f031eeSMatthew G. Knepley } 1860338f77d5SMatthew G. Knepley /* Cleanup data arrays */ 1861b5a3613cSMatthew G. Knepley if (useFVM) { 1862b5a3613cSMatthew G. Knepley ierr = VecRestoreArrayRead(locGrad, &lgrad);CHKERRQ(ierr); 1863b5a3613cSMatthew G. Knepley ierr = VecRestoreArrayRead(cellGeometryFVM, (const PetscScalar **) &cgeomFVM);CHKERRQ(ierr); 1864b5a3613cSMatthew G. Knepley ierr = DMRestoreLocalVector(dmGrad, &locGrad);CHKERRQ(ierr); 1865b5a3613cSMatthew G. Knepley ierr = VecDestroy(&faceGeometryFVM);CHKERRQ(ierr); 1866b5a3613cSMatthew G. Knepley ierr = VecDestroy(&cellGeometryFVM);CHKERRQ(ierr); 1867b5a3613cSMatthew G. Knepley ierr = DMDestroy(&dmGrad);CHKERRQ(ierr); 1868b5a3613cSMatthew G. Knepley } 186973d901b8SMatthew G. Knepley if (dmAux) {ierr = PetscFree(a);CHKERRQ(ierr);} 1870338f77d5SMatthew G. Knepley ierr = PetscFree(u);CHKERRQ(ierr); 1871338f77d5SMatthew G. Knepley /* Cleanup */ 1872f99c8401SToby Isaac if (affineQuad) { 1873f99c8401SToby Isaac ierr = PetscFEGeomDestroy(&cgeomFEM);CHKERRQ(ierr); 1874f99c8401SToby Isaac } 1875f99c8401SToby Isaac ierr = PetscQuadratureDestroy(&affineQuad);CHKERRQ(ierr); 1876c330f8ffSToby Isaac ierr = ISDestroy(&cellIS);CHKERRQ(ierr); 1877338f77d5SMatthew G. Knepley ierr = DMRestoreLocalVector(dm, &locX);CHKERRQ(ierr); 1878338f77d5SMatthew G. Knepley PetscFunctionReturn(0); 1879338f77d5SMatthew G. Knepley } 1880338f77d5SMatthew G. Knepley 1881338f77d5SMatthew G. Knepley /*@ 1882338f77d5SMatthew G. Knepley DMPlexComputeIntegralFEM - Form the integral over the domain from the global input X using pointwise functions specified by the user 1883338f77d5SMatthew G. Knepley 1884338f77d5SMatthew G. Knepley Input Parameters: 1885338f77d5SMatthew G. Knepley + dm - The mesh 1886338f77d5SMatthew G. Knepley . X - Global input vector 1887338f77d5SMatthew G. Knepley - user - The user context 1888338f77d5SMatthew G. Knepley 1889338f77d5SMatthew G. Knepley Output Parameter: 1890338f77d5SMatthew G. Knepley . integral - Integral for each field 1891338f77d5SMatthew G. Knepley 1892338f77d5SMatthew G. Knepley Level: developer 1893338f77d5SMatthew G. Knepley 1894338f77d5SMatthew G. Knepley .seealso: DMPlexComputeResidualFEM() 1895338f77d5SMatthew G. Knepley @*/ 1896b8feb594SMatthew G. Knepley PetscErrorCode DMPlexComputeIntegralFEM(DM dm, Vec X, PetscScalar *integral, void *user) 1897338f77d5SMatthew G. Knepley { 1898338f77d5SMatthew G. Knepley DM_Plex *mesh = (DM_Plex *) dm->data; 1899b8feb594SMatthew G. Knepley PetscScalar *cintegral, *lintegral; 1900*412e9a14SMatthew G. Knepley PetscInt Nf, f, cellHeight, cStart, cEnd, cell; 1901338f77d5SMatthew G. Knepley PetscErrorCode ierr; 1902338f77d5SMatthew G. Knepley 1903338f77d5SMatthew G. Knepley PetscFunctionBegin; 1904338f77d5SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 1905338f77d5SMatthew G. Knepley PetscValidHeaderSpecific(X, VEC_CLASSID, 2); 1906338f77d5SMatthew G. Knepley PetscValidPointer(integral, 3); 1907338f77d5SMatthew G. Knepley ierr = PetscLogEventBegin(DMPLEX_IntegralFEM,dm,0,0,0);CHKERRQ(ierr); 1908338f77d5SMatthew G. Knepley ierr = DMGetNumFields(dm, &Nf);CHKERRQ(ierr); 1909338f77d5SMatthew G. Knepley ierr = DMPlexGetVTKCellHeight(dm, &cellHeight);CHKERRQ(ierr); 1910*412e9a14SMatthew G. Knepley ierr = DMPlexGetSimplexOrBoxCells(dm, cellHeight, &cStart, &cEnd);CHKERRQ(ierr); 1911338f77d5SMatthew G. Knepley /* TODO Introduce a loop over large chunks (right now this is a single chunk) */ 1912338f77d5SMatthew G. Knepley ierr = PetscCalloc2(Nf, &lintegral, (cEnd-cStart)*Nf, &cintegral);CHKERRQ(ierr); 1913338f77d5SMatthew G. Knepley ierr = DMPlexComputeIntegral_Internal(dm, X, cStart, cEnd, cintegral, user);CHKERRQ(ierr); 1914338f77d5SMatthew G. Knepley /* Sum up values */ 1915338f77d5SMatthew G. Knepley for (cell = cStart; cell < cEnd; ++cell) { 1916338f77d5SMatthew G. Knepley const PetscInt c = cell - cStart; 1917338f77d5SMatthew G. Knepley 1918338f77d5SMatthew G. Knepley if (mesh->printFEM > 1) {ierr = DMPrintCellVector(cell, "Cell Integral", Nf, &cintegral[c*Nf]);CHKERRQ(ierr);} 1919b8feb594SMatthew G. Knepley for (f = 0; f < Nf; ++f) lintegral[f] += cintegral[c*Nf+f]; 1920338f77d5SMatthew G. Knepley } 1921b8feb594SMatthew G. Knepley ierr = MPIU_Allreduce(lintegral, integral, Nf, MPIU_SCALAR, MPIU_SUM, PetscObjectComm((PetscObject) dm));CHKERRQ(ierr); 192273d901b8SMatthew G. Knepley if (mesh->printFEM) { 1923338f77d5SMatthew G. Knepley ierr = PetscPrintf(PetscObjectComm((PetscObject) dm), "Integral:");CHKERRQ(ierr); 1924b8feb594SMatthew G. Knepley for (f = 0; f < Nf; ++f) {ierr = PetscPrintf(PetscObjectComm((PetscObject) dm), " %g", (double) PetscRealPart(integral[f]));CHKERRQ(ierr);} 192573d901b8SMatthew G. Knepley ierr = PetscPrintf(PetscObjectComm((PetscObject) dm), "\n");CHKERRQ(ierr); 192673d901b8SMatthew G. Knepley } 1927338f77d5SMatthew G. Knepley ierr = PetscFree2(lintegral, cintegral);CHKERRQ(ierr); 1928338f77d5SMatthew G. Knepley ierr = PetscLogEventEnd(DMPLEX_IntegralFEM,dm,0,0,0);CHKERRQ(ierr); 1929338f77d5SMatthew G. Knepley PetscFunctionReturn(0); 1930338f77d5SMatthew G. Knepley } 1931338f77d5SMatthew G. Knepley 1932338f77d5SMatthew G. Knepley /*@ 1933338f77d5SMatthew G. Knepley DMPlexComputeCellwiseIntegralFEM - Form the vector of cellwise integrals F from the global input X using pointwise functions specified by the user 1934338f77d5SMatthew G. Knepley 1935338f77d5SMatthew G. Knepley Input Parameters: 1936338f77d5SMatthew G. Knepley + dm - The mesh 1937338f77d5SMatthew G. Knepley . X - Global input vector 1938338f77d5SMatthew G. Knepley - user - The user context 1939338f77d5SMatthew G. Knepley 1940338f77d5SMatthew G. Knepley Output Parameter: 1941338f77d5SMatthew G. Knepley . integral - Cellwise integrals for each field 1942338f77d5SMatthew G. Knepley 1943338f77d5SMatthew G. Knepley Level: developer 1944338f77d5SMatthew G. Knepley 1945338f77d5SMatthew G. Knepley .seealso: DMPlexComputeResidualFEM() 1946338f77d5SMatthew G. Knepley @*/ 1947338f77d5SMatthew G. Knepley PetscErrorCode DMPlexComputeCellwiseIntegralFEM(DM dm, Vec X, Vec F, void *user) 1948338f77d5SMatthew G. Knepley { 1949338f77d5SMatthew G. Knepley DM_Plex *mesh = (DM_Plex *) dm->data; 1950338f77d5SMatthew G. Knepley DM dmF; 1951338f77d5SMatthew G. Knepley PetscSection sectionF; 1952338f77d5SMatthew G. Knepley PetscScalar *cintegral, *af; 1953*412e9a14SMatthew G. Knepley PetscInt Nf, f, cellHeight, cStart, cEnd, cell; 1954338f77d5SMatthew G. Knepley PetscErrorCode ierr; 1955338f77d5SMatthew G. Knepley 1956338f77d5SMatthew G. Knepley PetscFunctionBegin; 1957338f77d5SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 1958338f77d5SMatthew G. Knepley PetscValidHeaderSpecific(X, VEC_CLASSID, 2); 1959338f77d5SMatthew G. Knepley PetscValidHeaderSpecific(F, VEC_CLASSID, 3); 1960338f77d5SMatthew G. Knepley ierr = PetscLogEventBegin(DMPLEX_IntegralFEM,dm,0,0,0);CHKERRQ(ierr); 1961338f77d5SMatthew G. Knepley ierr = DMGetNumFields(dm, &Nf);CHKERRQ(ierr); 1962338f77d5SMatthew G. Knepley ierr = DMPlexGetVTKCellHeight(dm, &cellHeight);CHKERRQ(ierr); 1963*412e9a14SMatthew G. Knepley ierr = DMPlexGetSimplexOrBoxCells(dm, cellHeight, &cStart, &cEnd);CHKERRQ(ierr); 1964338f77d5SMatthew G. Knepley /* TODO Introduce a loop over large chunks (right now this is a single chunk) */ 1965338f77d5SMatthew G. Knepley ierr = PetscCalloc1((cEnd-cStart)*Nf, &cintegral);CHKERRQ(ierr); 1966338f77d5SMatthew G. Knepley ierr = DMPlexComputeIntegral_Internal(dm, X, cStart, cEnd, cintegral, user);CHKERRQ(ierr); 1967338f77d5SMatthew G. Knepley /* Put values in F*/ 1968338f77d5SMatthew G. Knepley ierr = VecGetDM(F, &dmF);CHKERRQ(ierr); 196992fd8e1eSJed Brown ierr = DMGetLocalSection(dmF, §ionF);CHKERRQ(ierr); 1970338f77d5SMatthew G. Knepley ierr = VecGetArray(F, &af);CHKERRQ(ierr); 1971338f77d5SMatthew G. Knepley for (cell = cStart; cell < cEnd; ++cell) { 1972338f77d5SMatthew G. Knepley const PetscInt c = cell - cStart; 1973338f77d5SMatthew G. Knepley PetscInt dof, off; 1974338f77d5SMatthew G. Knepley 1975338f77d5SMatthew G. Knepley if (mesh->printFEM > 1) {ierr = DMPrintCellVector(cell, "Cell Integral", Nf, &cintegral[c*Nf]);CHKERRQ(ierr);} 1976338f77d5SMatthew G. Knepley ierr = PetscSectionGetDof(sectionF, cell, &dof);CHKERRQ(ierr); 1977338f77d5SMatthew G. Knepley ierr = PetscSectionGetOffset(sectionF, cell, &off);CHKERRQ(ierr); 1978338f77d5SMatthew G. Knepley if (dof != Nf) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "The number of cell dofs %D != %D", dof, Nf); 1979338f77d5SMatthew G. Knepley for (f = 0; f < Nf; ++f) af[off+f] = cintegral[c*Nf+f]; 1980338f77d5SMatthew G. Knepley } 1981338f77d5SMatthew G. Knepley ierr = VecRestoreArray(F, &af);CHKERRQ(ierr); 1982338f77d5SMatthew G. Knepley ierr = PetscFree(cintegral);CHKERRQ(ierr); 1983c1f031eeSMatthew G. Knepley ierr = PetscLogEventEnd(DMPLEX_IntegralFEM,dm,0,0,0);CHKERRQ(ierr); 198473d901b8SMatthew G. Knepley PetscFunctionReturn(0); 198573d901b8SMatthew G. Knepley } 198673d901b8SMatthew G. Knepley 19879b6f715bSMatthew G. Knepley static PetscErrorCode DMPlexComputeBdIntegral_Internal(DM dm, Vec locX, IS pointIS, 19889b6f715bSMatthew G. Knepley void (*func)(PetscInt, PetscInt, PetscInt, 198964c72086SMatthew G. Knepley const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], 199064c72086SMatthew G. Knepley const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], 199164c72086SMatthew G. Knepley PetscReal, const PetscReal[], const PetscReal[], PetscInt, const PetscScalar[], PetscScalar[]), 199264c72086SMatthew G. Knepley PetscScalar *fintegral, void *user) 199364c72086SMatthew G. Knepley { 19949b6f715bSMatthew G. Knepley DM plex = NULL, plexA = NULL; 1995a6e0b375SMatthew G. Knepley DMEnclosureType encAux; 19969b6f715bSMatthew G. Knepley PetscDS prob, probAux = NULL; 19979b6f715bSMatthew G. Knepley PetscSection section, sectionAux = NULL; 19989b6f715bSMatthew G. Knepley Vec locA = NULL; 19999b6f715bSMatthew G. Knepley DMField coordField; 20009b6f715bSMatthew G. Knepley PetscInt Nf, totDim, *uOff, *uOff_x; 20019b6f715bSMatthew G. Knepley PetscInt NfAux = 0, totDimAux = 0, *aOff = NULL; 20029b6f715bSMatthew G. Knepley PetscScalar *u, *a = NULL; 200364c72086SMatthew G. Knepley const PetscScalar *constants; 20049b6f715bSMatthew G. Knepley PetscInt numConstants, f; 200564c72086SMatthew G. Knepley PetscErrorCode ierr; 200664c72086SMatthew G. Knepley 200764c72086SMatthew G. Knepley PetscFunctionBegin; 20089b6f715bSMatthew G. Knepley ierr = DMGetCoordinateField(dm, &coordField);CHKERRQ(ierr); 20099b6f715bSMatthew G. Knepley ierr = DMConvert(dm, DMPLEX, &plex);CHKERRQ(ierr); 201064c72086SMatthew G. Knepley ierr = DMGetDS(dm, &prob);CHKERRQ(ierr); 201192fd8e1eSJed Brown ierr = DMGetLocalSection(dm, §ion);CHKERRQ(ierr); 201264c72086SMatthew G. Knepley ierr = PetscSectionGetNumFields(section, &Nf);CHKERRQ(ierr); 201364c72086SMatthew G. Knepley /* Determine which discretizations we have */ 20149b6f715bSMatthew G. Knepley for (f = 0; f < Nf; ++f) { 201564c72086SMatthew G. Knepley PetscObject obj; 201664c72086SMatthew G. Knepley PetscClassId id; 201764c72086SMatthew G. Knepley 20189b6f715bSMatthew G. Knepley ierr = PetscDSGetDiscretization(prob, f, &obj);CHKERRQ(ierr); 201964c72086SMatthew G. Knepley ierr = PetscObjectGetClassId(obj, &id);CHKERRQ(ierr); 20209b6f715bSMatthew G. Knepley if (id == PETSCFV_CLASSID) SETERRQ1(PetscObjectComm((PetscObject) dm), PETSC_ERR_SUP, "Not supported for FVM (field %D)", f); 202164c72086SMatthew G. Knepley } 202264c72086SMatthew G. Knepley /* Read DS information */ 202364c72086SMatthew G. Knepley ierr = PetscDSGetTotalDimension(prob, &totDim);CHKERRQ(ierr); 202464c72086SMatthew G. Knepley ierr = PetscDSGetComponentOffsets(prob, &uOff);CHKERRQ(ierr); 202564c72086SMatthew G. Knepley ierr = PetscDSGetComponentDerivativeOffsets(prob, &uOff_x);CHKERRQ(ierr); 202664c72086SMatthew G. Knepley ierr = PetscDSGetConstants(prob, &numConstants, &constants);CHKERRQ(ierr); 202764c72086SMatthew G. Knepley /* Read Auxiliary DS information */ 202864c72086SMatthew G. Knepley ierr = PetscObjectQuery((PetscObject) dm, "A", (PetscObject *) &locA);CHKERRQ(ierr); 20299b6f715bSMatthew G. Knepley if (locA) { 20309b6f715bSMatthew G. Knepley DM dmAux; 20319b6f715bSMatthew G. Knepley 20329b6f715bSMatthew G. Knepley ierr = VecGetDM(locA, &dmAux);CHKERRQ(ierr); 2033a6e0b375SMatthew G. Knepley ierr = DMGetEnclosureRelation(dmAux, dm, &encAux);CHKERRQ(ierr); 20349b6f715bSMatthew G. Knepley ierr = DMConvert(dmAux, DMPLEX, &plexA);CHKERRQ(ierr); 203564c72086SMatthew G. Knepley ierr = DMGetDS(dmAux, &probAux);CHKERRQ(ierr); 203664c72086SMatthew G. Knepley ierr = PetscDSGetNumFields(probAux, &NfAux);CHKERRQ(ierr); 203792fd8e1eSJed Brown ierr = DMGetLocalSection(dmAux, §ionAux);CHKERRQ(ierr); 203864c72086SMatthew G. Knepley ierr = PetscDSGetTotalDimension(probAux, &totDimAux);CHKERRQ(ierr); 203964c72086SMatthew G. Knepley ierr = PetscDSGetComponentOffsets(probAux, &aOff);CHKERRQ(ierr); 204064c72086SMatthew G. Knepley } 20419b6f715bSMatthew G. Knepley /* Integrate over points */ 20429b6f715bSMatthew G. Knepley { 20439b6f715bSMatthew G. Knepley PetscFEGeom *fgeom, *chunkGeom = NULL; 2044b7260050SToby Isaac PetscInt maxDegree; 20459b6f715bSMatthew G. Knepley PetscQuadrature qGeom = NULL; 20469b6f715bSMatthew G. Knepley const PetscInt *points; 20479b6f715bSMatthew G. Knepley PetscInt numFaces, face, Nq, field; 20489b6f715bSMatthew G. Knepley PetscInt numChunks, chunkSize, chunk, Nr, offset; 204964c72086SMatthew G. Knepley 20509b6f715bSMatthew G. Knepley ierr = ISGetLocalSize(pointIS, &numFaces);CHKERRQ(ierr); 20519b6f715bSMatthew G. Knepley ierr = ISGetIndices(pointIS, &points);CHKERRQ(ierr); 20529b6f715bSMatthew G. Knepley ierr = PetscCalloc2(numFaces*totDim, &u, locA ? numFaces*totDimAux : 0, &a);CHKERRQ(ierr); 2053b7260050SToby Isaac ierr = DMFieldGetDegree(coordField, pointIS, NULL, &maxDegree);CHKERRQ(ierr); 205464c72086SMatthew G. Knepley for (field = 0; field < Nf; ++field) { 205564c72086SMatthew G. Knepley PetscFE fe; 205664c72086SMatthew G. Knepley 205764c72086SMatthew G. Knepley ierr = PetscDSGetDiscretization(prob, field, (PetscObject *) &fe);CHKERRQ(ierr); 2058b7260050SToby Isaac if (maxDegree <= 1) {ierr = DMFieldCreateDefaultQuadrature(coordField, pointIS, &qGeom);CHKERRQ(ierr);} 20599b6f715bSMatthew G. Knepley if (!qGeom) { 20609b6f715bSMatthew G. Knepley ierr = PetscFEGetFaceQuadrature(fe, &qGeom);CHKERRQ(ierr); 20619b6f715bSMatthew G. Knepley ierr = PetscObjectReference((PetscObject) qGeom);CHKERRQ(ierr); 20629b6f715bSMatthew G. Knepley } 20639b6f715bSMatthew G. Knepley ierr = PetscQuadratureGetData(qGeom, NULL, NULL, &Nq, NULL, NULL);CHKERRQ(ierr); 20649b6f715bSMatthew G. Knepley ierr = DMPlexGetFEGeom(coordField, pointIS, qGeom, PETSC_TRUE, &fgeom);CHKERRQ(ierr); 20659b6f715bSMatthew G. Knepley for (face = 0; face < numFaces; ++face) { 20669b6f715bSMatthew G. Knepley const PetscInt point = points[face], *support, *cone; 20679b6f715bSMatthew G. Knepley PetscScalar *x = NULL; 20689b6f715bSMatthew G. Knepley PetscInt i, coneSize, faceLoc; 20699b6f715bSMatthew G. Knepley 20709b6f715bSMatthew G. Knepley ierr = DMPlexGetSupport(dm, point, &support);CHKERRQ(ierr); 20719b6f715bSMatthew G. Knepley ierr = DMPlexGetConeSize(dm, support[0], &coneSize);CHKERRQ(ierr); 20729b6f715bSMatthew G. Knepley ierr = DMPlexGetCone(dm, support[0], &cone);CHKERRQ(ierr); 20739b6f715bSMatthew G. Knepley for (faceLoc = 0; faceLoc < coneSize; ++faceLoc) if (cone[faceLoc] == point) break; 20749b6f715bSMatthew G. Knepley if (faceLoc == coneSize) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Could not find face %D in cone of support[0] %D", face, support[0]); 20759b6f715bSMatthew G. Knepley fgeom->face[face][0] = faceLoc; 20769b6f715bSMatthew G. Knepley ierr = DMPlexVecGetClosure(plex, section, locX, support[0], NULL, &x);CHKERRQ(ierr); 20779b6f715bSMatthew G. Knepley for (i = 0; i < totDim; ++i) u[face*totDim+i] = x[i]; 20789b6f715bSMatthew G. Knepley ierr = DMPlexVecRestoreClosure(plex, section, locX, support[0], NULL, &x);CHKERRQ(ierr); 20799b6f715bSMatthew G. Knepley if (locA) { 20809b6f715bSMatthew G. Knepley PetscInt subp; 2081a6e0b375SMatthew G. Knepley ierr = DMGetEnclosurePoint(plexA, dm, encAux, support[0], &subp);CHKERRQ(ierr); 20829b6f715bSMatthew G. Knepley ierr = DMPlexVecGetClosure(plexA, sectionAux, locA, subp, NULL, &x);CHKERRQ(ierr); 20839b6f715bSMatthew G. Knepley for (i = 0; i < totDimAux; ++i) a[f*totDimAux+i] = x[i]; 20849b6f715bSMatthew G. Knepley ierr = DMPlexVecRestoreClosure(plexA, sectionAux, locA, subp, NULL, &x);CHKERRQ(ierr); 20859b6f715bSMatthew G. Knepley } 20869b6f715bSMatthew G. Knepley } 20879b6f715bSMatthew G. Knepley /* Get blocking */ 20889b6f715bSMatthew G. Knepley { 20899b6f715bSMatthew G. Knepley PetscQuadrature q; 20909b6f715bSMatthew G. Knepley PetscInt numBatches, batchSize, numBlocks, blockSize; 20919b6f715bSMatthew G. Knepley PetscInt Nq, Nb; 20929b6f715bSMatthew G. Knepley 209364c72086SMatthew G. Knepley ierr = PetscFEGetTileSizes(fe, NULL, &numBlocks, NULL, &numBatches);CHKERRQ(ierr); 209464c72086SMatthew G. Knepley ierr = PetscFEGetQuadrature(fe, &q);CHKERRQ(ierr); 209564c72086SMatthew G. Knepley ierr = PetscQuadratureGetData(q, NULL, NULL, &Nq, NULL, NULL);CHKERRQ(ierr); 209664c72086SMatthew G. Knepley ierr = PetscFEGetDimension(fe, &Nb);CHKERRQ(ierr); 209764c72086SMatthew G. Knepley blockSize = Nb*Nq; 209864c72086SMatthew G. Knepley batchSize = numBlocks * blockSize; 20999b6f715bSMatthew G. Knepley chunkSize = numBatches*batchSize; 210064c72086SMatthew G. Knepley ierr = PetscFESetTileSizes(fe, blockSize, numBlocks, batchSize, numBatches);CHKERRQ(ierr); 21019b6f715bSMatthew G. Knepley numChunks = numFaces / chunkSize; 21029b6f715bSMatthew G. Knepley Nr = numFaces % chunkSize; 210364c72086SMatthew G. Knepley offset = numFaces - Nr; 210464c72086SMatthew G. Knepley } 21059b6f715bSMatthew G. Knepley /* Do integration for each field */ 21069b6f715bSMatthew G. Knepley for (chunk = 0; chunk < numChunks; ++chunk) { 21079b6f715bSMatthew G. Knepley ierr = PetscFEGeomGetChunk(fgeom, chunk*chunkSize, (chunk+1)*chunkSize, &chunkGeom);CHKERRQ(ierr); 21084bee2e38SMatthew G. Knepley ierr = PetscFEIntegrateBd(prob, field, func, chunkSize, chunkGeom, u, probAux, a, fintegral);CHKERRQ(ierr); 21099b6f715bSMatthew G. Knepley ierr = PetscFEGeomRestoreChunk(fgeom, 0, offset, &chunkGeom);CHKERRQ(ierr); 211064c72086SMatthew G. Knepley } 21119b6f715bSMatthew G. Knepley ierr = PetscFEGeomGetChunk(fgeom, offset, numFaces, &chunkGeom);CHKERRQ(ierr); 21124bee2e38SMatthew G. Knepley ierr = PetscFEIntegrateBd(prob, field, func, Nr, chunkGeom, &u[offset*totDim], probAux, a ? &a[offset*totDimAux] : NULL, &fintegral[offset*Nf]);CHKERRQ(ierr); 21139b6f715bSMatthew G. Knepley ierr = PetscFEGeomRestoreChunk(fgeom, offset, numFaces, &chunkGeom);CHKERRQ(ierr); 211464c72086SMatthew G. Knepley /* Cleanup data arrays */ 21159b6f715bSMatthew G. Knepley ierr = DMPlexRestoreFEGeom(coordField, pointIS, qGeom, PETSC_TRUE, &fgeom);CHKERRQ(ierr); 21169b6f715bSMatthew G. Knepley ierr = PetscQuadratureDestroy(&qGeom);CHKERRQ(ierr); 21179b6f715bSMatthew G. Knepley ierr = PetscFree2(u, a);CHKERRQ(ierr); 21189b6f715bSMatthew G. Knepley ierr = ISRestoreIndices(pointIS, &points);CHKERRQ(ierr); 211964c72086SMatthew G. Knepley } 212064c72086SMatthew G. Knepley } 21219b6f715bSMatthew G. Knepley if (plex) {ierr = DMDestroy(&plex);CHKERRQ(ierr);} 21229b6f715bSMatthew G. Knepley if (plexA) {ierr = DMDestroy(&plexA);CHKERRQ(ierr);} 21239b6f715bSMatthew G. Knepley PetscFunctionReturn(0); 21249b6f715bSMatthew G. Knepley } 21259b6f715bSMatthew G. Knepley 21269b6f715bSMatthew G. Knepley /*@ 21279b6f715bSMatthew G. Knepley DMPlexComputeBdIntegral - Form the integral over the specified boundary from the global input X using pointwise functions specified by the user 21289b6f715bSMatthew G. Knepley 21299b6f715bSMatthew G. Knepley Input Parameters: 21309b6f715bSMatthew G. Knepley + dm - The mesh 21319b6f715bSMatthew G. Knepley . X - Global input vector 21329b6f715bSMatthew G. Knepley . label - The boundary DMLabel 21339b6f715bSMatthew G. Knepley . numVals - The number of label values to use, or PETSC_DETERMINE for all values 21349b6f715bSMatthew G. Knepley . vals - The label values to use, or PETSC_NULL for all values 21359b6f715bSMatthew G. Knepley . func = The function to integrate along the boundary 21369b6f715bSMatthew G. Knepley - user - The user context 21379b6f715bSMatthew G. Knepley 21389b6f715bSMatthew G. Knepley Output Parameter: 21399b6f715bSMatthew G. Knepley . integral - Integral for each field 21409b6f715bSMatthew G. Knepley 21419b6f715bSMatthew G. Knepley Level: developer 21429b6f715bSMatthew G. Knepley 21439b6f715bSMatthew G. Knepley .seealso: DMPlexComputeIntegralFEM(), DMPlexComputeBdResidualFEM() 21449b6f715bSMatthew G. Knepley @*/ 21459b6f715bSMatthew G. Knepley PetscErrorCode DMPlexComputeBdIntegral(DM dm, Vec X, DMLabel label, PetscInt numVals, const PetscInt vals[], 21469b6f715bSMatthew G. Knepley void (*func)(PetscInt, PetscInt, PetscInt, 21479b6f715bSMatthew G. Knepley const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], 21489b6f715bSMatthew G. Knepley const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], 21499b6f715bSMatthew G. Knepley PetscReal, const PetscReal[], const PetscReal[], PetscInt, const PetscScalar[], PetscScalar[]), 21509b6f715bSMatthew G. Knepley PetscScalar *integral, void *user) 21519b6f715bSMatthew G. Knepley { 21529b6f715bSMatthew G. Knepley Vec locX; 21539b6f715bSMatthew G. Knepley PetscSection section; 21549b6f715bSMatthew G. Knepley DMLabel depthLabel; 21559b6f715bSMatthew G. Knepley IS facetIS; 21569b6f715bSMatthew G. Knepley PetscInt dim, Nf, f, v; 21579b6f715bSMatthew G. Knepley PetscErrorCode ierr; 21589b6f715bSMatthew G. Knepley 21599b6f715bSMatthew G. Knepley PetscFunctionBegin; 21609b6f715bSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 21619b6f715bSMatthew G. Knepley PetscValidHeaderSpecific(X, VEC_CLASSID, 2); 21629b6f715bSMatthew G. Knepley PetscValidPointer(label, 3); 21639b6f715bSMatthew G. Knepley if (vals) PetscValidPointer(vals, 5); 21649b6f715bSMatthew G. Knepley PetscValidPointer(integral, 6); 21659b6f715bSMatthew G. Knepley ierr = PetscLogEventBegin(DMPLEX_IntegralFEM,dm,0,0,0);CHKERRQ(ierr); 21669b6f715bSMatthew G. Knepley ierr = DMPlexGetDepthLabel(dm, &depthLabel);CHKERRQ(ierr); 21679b6f715bSMatthew G. Knepley ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr); 21689b6f715bSMatthew G. Knepley ierr = DMLabelGetStratumIS(depthLabel, dim-1, &facetIS);CHKERRQ(ierr); 216992fd8e1eSJed Brown ierr = DMGetLocalSection(dm, §ion);CHKERRQ(ierr); 21709b6f715bSMatthew G. Knepley ierr = PetscSectionGetNumFields(section, &Nf);CHKERRQ(ierr); 21719b6f715bSMatthew G. Knepley /* Get local solution with boundary values */ 21729b6f715bSMatthew G. Knepley ierr = DMGetLocalVector(dm, &locX);CHKERRQ(ierr); 21739b6f715bSMatthew G. Knepley ierr = DMPlexInsertBoundaryValues(dm, PETSC_TRUE, locX, 0.0, NULL, NULL, NULL);CHKERRQ(ierr); 21749b6f715bSMatthew G. Knepley ierr = DMGlobalToLocalBegin(dm, X, INSERT_VALUES, locX);CHKERRQ(ierr); 21759b6f715bSMatthew G. Knepley ierr = DMGlobalToLocalEnd(dm, X, INSERT_VALUES, locX);CHKERRQ(ierr); 21769b6f715bSMatthew G. Knepley /* Loop over label values */ 2177580bdb30SBarry Smith ierr = PetscArrayzero(integral, Nf);CHKERRQ(ierr); 21789b6f715bSMatthew G. Knepley for (v = 0; v < numVals; ++v) { 21799b6f715bSMatthew G. Knepley IS pointIS; 21809b6f715bSMatthew G. Knepley PetscInt numFaces, face; 21819b6f715bSMatthew G. Knepley PetscScalar *fintegral; 21829b6f715bSMatthew G. Knepley 21839b6f715bSMatthew G. Knepley ierr = DMLabelGetStratumIS(label, vals[v], &pointIS);CHKERRQ(ierr); 21849b6f715bSMatthew G. Knepley if (!pointIS) continue; /* No points with that id on this process */ 21859b6f715bSMatthew G. Knepley { 21869b6f715bSMatthew G. Knepley IS isectIS; 21879b6f715bSMatthew G. Knepley 21889b6f715bSMatthew G. Knepley /* TODO: Special cases of ISIntersect where it is quick to check a priori if one is a superset of the other */ 21899b6f715bSMatthew G. Knepley ierr = ISIntersect_Caching_Internal(facetIS, pointIS, &isectIS);CHKERRQ(ierr); 21909b6f715bSMatthew G. Knepley ierr = ISDestroy(&pointIS);CHKERRQ(ierr); 21919b6f715bSMatthew G. Knepley pointIS = isectIS; 21929b6f715bSMatthew G. Knepley } 21939b6f715bSMatthew G. Knepley ierr = ISGetLocalSize(pointIS, &numFaces);CHKERRQ(ierr); 21949b6f715bSMatthew G. Knepley ierr = PetscCalloc1(numFaces*Nf, &fintegral);CHKERRQ(ierr); 21959b6f715bSMatthew G. Knepley ierr = DMPlexComputeBdIntegral_Internal(dm, locX, pointIS, func, fintegral, user);CHKERRQ(ierr); 21969b6f715bSMatthew G. Knepley /* Sum point contributions into integral */ 21979b6f715bSMatthew G. Knepley for (f = 0; f < Nf; ++f) for (face = 0; face < numFaces; ++face) integral[f] += fintegral[face*Nf+f]; 21989b6f715bSMatthew G. Knepley ierr = PetscFree(fintegral);CHKERRQ(ierr); 21999b6f715bSMatthew G. Knepley ierr = ISDestroy(&pointIS);CHKERRQ(ierr); 22009b6f715bSMatthew G. Knepley } 220164c72086SMatthew G. Knepley ierr = DMRestoreLocalVector(dm, &locX);CHKERRQ(ierr); 22029b6f715bSMatthew G. Knepley ierr = ISDestroy(&facetIS);CHKERRQ(ierr); 22039b6f715bSMatthew G. Knepley ierr = PetscLogEventEnd(DMPLEX_IntegralFEM,dm,0,0,0);CHKERRQ(ierr); 220464c72086SMatthew G. Knepley PetscFunctionReturn(0); 220564c72086SMatthew G. Knepley } 220664c72086SMatthew G. Knepley 2207d69c5d34SMatthew G. Knepley /*@ 220868132eb9SMatthew G. Knepley DMPlexComputeInterpolatorNested - Form the local portion of the interpolation matrix I from the coarse DM to the uniformly refined DM. 2209d69c5d34SMatthew G. Knepley 2210d69c5d34SMatthew G. Knepley Input Parameters: 2211d69c5d34SMatthew G. Knepley + dmf - The fine mesh 2212d69c5d34SMatthew G. Knepley . dmc - The coarse mesh 2213d69c5d34SMatthew G. Knepley - user - The user context 2214d69c5d34SMatthew G. Knepley 2215d69c5d34SMatthew G. Knepley Output Parameter: 2216934789fcSMatthew G. Knepley . In - The interpolation matrix 2217d69c5d34SMatthew G. Knepley 2218d69c5d34SMatthew G. Knepley Level: developer 2219d69c5d34SMatthew G. Knepley 222068132eb9SMatthew G. Knepley .seealso: DMPlexComputeInterpolatorGeneral(), DMPlexComputeJacobianFEM() 2221d69c5d34SMatthew G. Knepley @*/ 222268132eb9SMatthew G. Knepley PetscErrorCode DMPlexComputeInterpolatorNested(DM dmc, DM dmf, Mat In, void *user) 2223d69c5d34SMatthew G. Knepley { 2224d69c5d34SMatthew G. Knepley DM_Plex *mesh = (DM_Plex *) dmc->data; 2225d69c5d34SMatthew G. Knepley const char *name = "Interpolator"; 22267c2b9c7aSMatthew G. Knepley PetscDS cds, rds; 2227d69c5d34SMatthew G. Knepley PetscFE *feRef; 222897c42addSMatthew G. Knepley PetscFV *fvRef; 2229d69c5d34SMatthew G. Knepley PetscSection fsection, fglobalSection; 2230d69c5d34SMatthew G. Knepley PetscSection csection, cglobalSection; 2231d69c5d34SMatthew G. Knepley PetscScalar *elemMat; 2232485ad865SMatthew G. Knepley PetscInt dim, Nf, f, fieldI, fieldJ, offsetI, offsetJ, cStart, cEnd, c; 22330f2d7e86SMatthew G. Knepley PetscInt cTotDim, rTotDim = 0; 2234d69c5d34SMatthew G. Knepley PetscErrorCode ierr; 2235d69c5d34SMatthew G. Knepley 2236d69c5d34SMatthew G. Knepley PetscFunctionBegin; 2237d69c5d34SMatthew G. Knepley ierr = PetscLogEventBegin(DMPLEX_InterpolatorFEM,dmc,dmf,0,0);CHKERRQ(ierr); 2238c73cfb54SMatthew G. Knepley ierr = DMGetDimension(dmf, &dim);CHKERRQ(ierr); 223992fd8e1eSJed Brown ierr = DMGetLocalSection(dmf, &fsection);CHKERRQ(ierr); 2240e87a4003SBarry Smith ierr = DMGetGlobalSection(dmf, &fglobalSection);CHKERRQ(ierr); 224192fd8e1eSJed Brown ierr = DMGetLocalSection(dmc, &csection);CHKERRQ(ierr); 2242e87a4003SBarry Smith ierr = DMGetGlobalSection(dmc, &cglobalSection);CHKERRQ(ierr); 2243d69c5d34SMatthew G. Knepley ierr = PetscSectionGetNumFields(fsection, &Nf);CHKERRQ(ierr); 2244*412e9a14SMatthew G. Knepley ierr = DMPlexGetSimplexOrBoxCells(dmc, 0, &cStart, &cEnd);CHKERRQ(ierr); 22457c2b9c7aSMatthew G. Knepley ierr = DMGetDS(dmc, &cds);CHKERRQ(ierr); 22467c2b9c7aSMatthew G. Knepley ierr = DMGetDS(dmf, &rds);CHKERRQ(ierr); 224797c42addSMatthew G. Knepley ierr = PetscCalloc2(Nf, &feRef, Nf, &fvRef);CHKERRQ(ierr); 2248d69c5d34SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 224997c42addSMatthew G. Knepley PetscObject obj; 225097c42addSMatthew G. Knepley PetscClassId id; 2251aa7890ccSMatthew G. Knepley PetscInt rNb = 0, Nc = 0; 2252d69c5d34SMatthew G. Knepley 22537c2b9c7aSMatthew G. Knepley ierr = PetscDSGetDiscretization(rds, f, &obj);CHKERRQ(ierr); 225497c42addSMatthew G. Knepley ierr = PetscObjectGetClassId(obj, &id);CHKERRQ(ierr); 225597c42addSMatthew G. Knepley if (id == PETSCFE_CLASSID) { 225697c42addSMatthew G. Knepley PetscFE fe = (PetscFE) obj; 225797c42addSMatthew G. Knepley 22580f2d7e86SMatthew G. Knepley ierr = PetscFERefine(fe, &feRef[f]);CHKERRQ(ierr); 2259d69c5d34SMatthew G. Knepley ierr = PetscFEGetDimension(feRef[f], &rNb);CHKERRQ(ierr); 22600f2d7e86SMatthew G. Knepley ierr = PetscFEGetNumComponents(fe, &Nc);CHKERRQ(ierr); 226197c42addSMatthew G. Knepley } else if (id == PETSCFV_CLASSID) { 226297c42addSMatthew G. Knepley PetscFV fv = (PetscFV) obj; 226397c42addSMatthew G. Knepley PetscDualSpace Q; 226497c42addSMatthew G. Knepley 226597c42addSMatthew G. Knepley ierr = PetscFVRefine(fv, &fvRef[f]);CHKERRQ(ierr); 226697c42addSMatthew G. Knepley ierr = PetscFVGetDualSpace(fvRef[f], &Q);CHKERRQ(ierr); 226797c42addSMatthew G. Knepley ierr = PetscDualSpaceGetDimension(Q, &rNb);CHKERRQ(ierr); 226897c42addSMatthew G. Knepley ierr = PetscFVGetNumComponents(fv, &Nc);CHKERRQ(ierr); 226997c42addSMatthew G. Knepley } 22709c3cf19fSMatthew G. Knepley rTotDim += rNb; 2271d69c5d34SMatthew G. Knepley } 22727c2b9c7aSMatthew G. Knepley ierr = PetscDSGetTotalDimension(cds, &cTotDim);CHKERRQ(ierr); 22730f2d7e86SMatthew G. Knepley ierr = PetscMalloc1(rTotDim*cTotDim,&elemMat);CHKERRQ(ierr); 2274580bdb30SBarry Smith ierr = PetscArrayzero(elemMat, rTotDim*cTotDim);CHKERRQ(ierr); 2275d69c5d34SMatthew G. Knepley for (fieldI = 0, offsetI = 0; fieldI < Nf; ++fieldI) { 2276d69c5d34SMatthew G. Knepley PetscDualSpace Qref; 2277d69c5d34SMatthew G. Knepley PetscQuadrature f; 2278d69c5d34SMatthew G. Knepley const PetscReal *qpoints, *qweights; 2279d69c5d34SMatthew G. Knepley PetscReal *points; 2280d69c5d34SMatthew G. Knepley PetscInt npoints = 0, Nc, Np, fpdim, i, k, p, d; 2281d69c5d34SMatthew G. Knepley 2282d69c5d34SMatthew G. Knepley /* Compose points from all dual basis functionals */ 228397c42addSMatthew G. Knepley if (feRef[fieldI]) { 2284d69c5d34SMatthew G. Knepley ierr = PetscFEGetDualSpace(feRef[fieldI], &Qref);CHKERRQ(ierr); 22850f2d7e86SMatthew G. Knepley ierr = PetscFEGetNumComponents(feRef[fieldI], &Nc);CHKERRQ(ierr); 228697c42addSMatthew G. Knepley } else { 228797c42addSMatthew G. Knepley ierr = PetscFVGetDualSpace(fvRef[fieldI], &Qref);CHKERRQ(ierr); 228897c42addSMatthew G. Knepley ierr = PetscFVGetNumComponents(fvRef[fieldI], &Nc);CHKERRQ(ierr); 228997c42addSMatthew G. Knepley } 2290d69c5d34SMatthew G. Knepley ierr = PetscDualSpaceGetDimension(Qref, &fpdim);CHKERRQ(ierr); 2291d69c5d34SMatthew G. Knepley for (i = 0; i < fpdim; ++i) { 2292d69c5d34SMatthew G. Knepley ierr = PetscDualSpaceGetFunctional(Qref, i, &f);CHKERRQ(ierr); 22939c3cf19fSMatthew G. Knepley ierr = PetscQuadratureGetData(f, NULL, NULL, &Np, NULL, NULL);CHKERRQ(ierr); 2294d69c5d34SMatthew G. Knepley npoints += Np; 2295d69c5d34SMatthew G. Knepley } 2296d69c5d34SMatthew G. Knepley ierr = PetscMalloc1(npoints*dim,&points);CHKERRQ(ierr); 2297d69c5d34SMatthew G. Knepley for (i = 0, k = 0; i < fpdim; ++i) { 2298d69c5d34SMatthew G. Knepley ierr = PetscDualSpaceGetFunctional(Qref, i, &f);CHKERRQ(ierr); 22999c3cf19fSMatthew G. Knepley ierr = PetscQuadratureGetData(f, NULL, NULL, &Np, &qpoints, NULL);CHKERRQ(ierr); 2300d69c5d34SMatthew G. Knepley for (p = 0; p < Np; ++p, ++k) for (d = 0; d < dim; ++d) points[k*dim+d] = qpoints[p*dim+d]; 2301d69c5d34SMatthew G. Knepley } 2302d69c5d34SMatthew G. Knepley 2303d69c5d34SMatthew G. Knepley for (fieldJ = 0, offsetJ = 0; fieldJ < Nf; ++fieldJ) { 230497c42addSMatthew G. Knepley PetscObject obj; 230597c42addSMatthew G. Knepley PetscClassId id; 23069c3cf19fSMatthew G. Knepley PetscInt NcJ = 0, cpdim = 0, j, qNc; 2307d69c5d34SMatthew G. Knepley 23087c2b9c7aSMatthew G. Knepley ierr = PetscDSGetDiscretization(cds, fieldJ, &obj);CHKERRQ(ierr); 230997c42addSMatthew G. Knepley ierr = PetscObjectGetClassId(obj, &id);CHKERRQ(ierr); 231097c42addSMatthew G. Knepley if (id == PETSCFE_CLASSID) { 231197c42addSMatthew G. Knepley PetscFE fe = (PetscFE) obj; 2312ef0bb6c7SMatthew G. Knepley PetscTabulation T = NULL; 2313d69c5d34SMatthew G. Knepley 2314d69c5d34SMatthew G. Knepley /* Evaluate basis at points */ 23150f2d7e86SMatthew G. Knepley ierr = PetscFEGetNumComponents(fe, &NcJ);CHKERRQ(ierr); 23160f2d7e86SMatthew G. Knepley ierr = PetscFEGetDimension(fe, &cpdim);CHKERRQ(ierr); 2317ffe73a53SMatthew G. Knepley /* For now, fields only interpolate themselves */ 2318ffe73a53SMatthew G. Knepley if (fieldI == fieldJ) { 23199c3cf19fSMatthew G. Knepley if (Nc != NcJ) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of components in fine space field %D does not match coarse field %D", Nc, NcJ); 2320ef0bb6c7SMatthew G. Knepley ierr = PetscFECreateTabulation(fe, 1, npoints, points, 0, &T);CHKERRQ(ierr); 2321d69c5d34SMatthew G. Knepley for (i = 0, k = 0; i < fpdim; ++i) { 2322d69c5d34SMatthew G. Knepley ierr = PetscDualSpaceGetFunctional(Qref, i, &f);CHKERRQ(ierr); 23239c3cf19fSMatthew G. Knepley ierr = PetscQuadratureGetData(f, NULL, &qNc, &Np, NULL, &qweights);CHKERRQ(ierr); 23249c3cf19fSMatthew G. Knepley if (qNc != NcJ) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of components in quadrature %D does not match coarse field %D", qNc, NcJ); 2325d69c5d34SMatthew G. Knepley for (p = 0; p < Np; ++p, ++k) { 232636a6d9c0SMatthew G. Knepley for (j = 0; j < cpdim; ++j) { 2327d172c84bSMatthew G. Knepley /* 2328d172c84bSMatthew G. Knepley cTotDim: Total columns in element interpolation matrix, sum of number of dual basis functionals in each field 2329d172c84bSMatthew G. Knepley offsetI, offsetJ: Offsets into the larger element interpolation matrix for different fields 2330d172c84bSMatthew G. Knepley fpdim, i, cpdim, j: Dofs for fine and coarse grids, correspond to dual space basis functionals 2331d172c84bSMatthew G. Knepley qNC, Nc, Ncj, c: Number of components in this field 2332d172c84bSMatthew G. Knepley Np, p: Number of quad points in the fine grid functional i 2333d172c84bSMatthew G. Knepley k: i*Np + p, overall point number for the interpolation 2334d172c84bSMatthew G. Knepley */ 2335ef0bb6c7SMatthew G. Knepley for (c = 0; c < Nc; ++c) elemMat[(offsetI + i)*cTotDim + offsetJ + j] += T->T[0][k*cpdim*NcJ+j*Nc+c]*qweights[p*qNc+c]; 233636a6d9c0SMatthew G. Knepley } 2337d69c5d34SMatthew G. Knepley } 2338d69c5d34SMatthew G. Knepley } 2339ef0bb6c7SMatthew G. Knepley ierr = PetscTabulationDestroy(&T);CHKERRQ(ierr);CHKERRQ(ierr); 2340ffe73a53SMatthew G. Knepley } 234197c42addSMatthew G. Knepley } else if (id == PETSCFV_CLASSID) { 234297c42addSMatthew G. Knepley PetscFV fv = (PetscFV) obj; 234397c42addSMatthew G. Knepley 234497c42addSMatthew G. Knepley /* Evaluate constant function at points */ 234597c42addSMatthew G. Knepley ierr = PetscFVGetNumComponents(fv, &NcJ);CHKERRQ(ierr); 234697c42addSMatthew G. Knepley cpdim = 1; 234797c42addSMatthew G. Knepley /* For now, fields only interpolate themselves */ 234897c42addSMatthew G. Knepley if (fieldI == fieldJ) { 2349ff1e0c32SBarry Smith if (Nc != NcJ) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of components in fine space field %D does not match coarse field %D", Nc, NcJ); 235097c42addSMatthew G. Knepley for (i = 0, k = 0; i < fpdim; ++i) { 235197c42addSMatthew G. Knepley ierr = PetscDualSpaceGetFunctional(Qref, i, &f);CHKERRQ(ierr); 23529c3cf19fSMatthew G. Knepley ierr = PetscQuadratureGetData(f, NULL, &qNc, &Np, NULL, &qweights);CHKERRQ(ierr); 23539c3cf19fSMatthew G. Knepley if (qNc != NcJ) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of components in quadrature %D does not match coarse field %D", qNc, NcJ); 235497c42addSMatthew G. Knepley for (p = 0; p < Np; ++p, ++k) { 235597c42addSMatthew G. Knepley for (j = 0; j < cpdim; ++j) { 2356458eb97cSMatthew G. Knepley for (c = 0; c < Nc; ++c) elemMat[(offsetI + i)*cTotDim + offsetJ + j] += 1.0*qweights[p*qNc+c]; 235797c42addSMatthew G. Knepley } 235897c42addSMatthew G. Knepley } 235997c42addSMatthew G. Knepley } 236097c42addSMatthew G. Knepley } 236197c42addSMatthew G. Knepley } 2362d172c84bSMatthew G. Knepley offsetJ += cpdim; 2363d69c5d34SMatthew G. Knepley } 2364d172c84bSMatthew G. Knepley offsetI += fpdim; 2365549a8adaSMatthew G. Knepley ierr = PetscFree(points);CHKERRQ(ierr); 2366d69c5d34SMatthew G. Knepley } 23670f2d7e86SMatthew G. Knepley if (mesh->printFEM > 1) {ierr = DMPrintCellMatrix(0, name, rTotDim, cTotDim, elemMat);CHKERRQ(ierr);} 23687f5b169aSMatthew G. Knepley /* Preallocate matrix */ 23697f5b169aSMatthew G. Knepley { 2370c094ef40SMatthew G. Knepley Mat preallocator; 2371c094ef40SMatthew G. Knepley PetscScalar *vals; 2372c094ef40SMatthew G. Knepley PetscInt *cellCIndices, *cellFIndices; 2373c094ef40SMatthew G. Knepley PetscInt locRows, locCols, cell; 23747f5b169aSMatthew G. Knepley 2375c094ef40SMatthew G. Knepley ierr = MatGetLocalSize(In, &locRows, &locCols);CHKERRQ(ierr); 2376c094ef40SMatthew G. Knepley ierr = MatCreate(PetscObjectComm((PetscObject) In), &preallocator);CHKERRQ(ierr); 2377c094ef40SMatthew G. Knepley ierr = MatSetType(preallocator, MATPREALLOCATOR);CHKERRQ(ierr); 2378c094ef40SMatthew G. Knepley ierr = MatSetSizes(preallocator, locRows, locCols, PETSC_DETERMINE, PETSC_DETERMINE);CHKERRQ(ierr); 2379c094ef40SMatthew G. Knepley ierr = MatSetUp(preallocator);CHKERRQ(ierr); 2380c094ef40SMatthew G. Knepley ierr = PetscCalloc3(rTotDim*cTotDim, &vals,cTotDim,&cellCIndices,rTotDim,&cellFIndices);CHKERRQ(ierr); 23817f5b169aSMatthew G. Knepley for (cell = cStart; cell < cEnd; ++cell) { 23827f5b169aSMatthew G. Knepley ierr = DMPlexMatGetClosureIndicesRefined(dmf, fsection, fglobalSection, dmc, csection, cglobalSection, cell, cellCIndices, cellFIndices);CHKERRQ(ierr); 2383c094ef40SMatthew G. Knepley ierr = MatSetValues(preallocator, rTotDim, cellFIndices, cTotDim, cellCIndices, vals, INSERT_VALUES);CHKERRQ(ierr); 23847f5b169aSMatthew G. Knepley } 2385c094ef40SMatthew G. Knepley ierr = PetscFree3(vals,cellCIndices,cellFIndices);CHKERRQ(ierr); 2386c094ef40SMatthew G. Knepley ierr = MatAssemblyBegin(preallocator, MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2387c094ef40SMatthew G. Knepley ierr = MatAssemblyEnd(preallocator, MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2388c094ef40SMatthew G. Knepley ierr = MatPreallocatorPreallocate(preallocator, PETSC_TRUE, In);CHKERRQ(ierr); 2389c094ef40SMatthew G. Knepley ierr = MatDestroy(&preallocator);CHKERRQ(ierr); 23907f5b169aSMatthew G. Knepley } 23917f5b169aSMatthew G. Knepley /* Fill matrix */ 23927f5b169aSMatthew G. Knepley ierr = MatZeroEntries(In);CHKERRQ(ierr); 2393d69c5d34SMatthew G. Knepley for (c = cStart; c < cEnd; ++c) { 2394934789fcSMatthew G. Knepley ierr = DMPlexMatSetClosureRefined(dmf, fsection, fglobalSection, dmc, csection, cglobalSection, In, c, elemMat, INSERT_VALUES);CHKERRQ(ierr); 2395d69c5d34SMatthew G. Knepley } 2396549a8adaSMatthew G. Knepley for (f = 0; f < Nf; ++f) {ierr = PetscFEDestroy(&feRef[f]);CHKERRQ(ierr);} 239797c42addSMatthew G. Knepley ierr = PetscFree2(feRef,fvRef);CHKERRQ(ierr); 2398549a8adaSMatthew G. Knepley ierr = PetscFree(elemMat);CHKERRQ(ierr); 2399934789fcSMatthew G. Knepley ierr = MatAssemblyBegin(In, MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2400934789fcSMatthew G. Knepley ierr = MatAssemblyEnd(In, MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2401d69c5d34SMatthew G. Knepley if (mesh->printFEM) { 2402825f8a23SLisandro Dalcin ierr = PetscPrintf(PetscObjectComm((PetscObject)In), "%s:\n", name);CHKERRQ(ierr); 2403934789fcSMatthew G. Knepley ierr = MatChop(In, 1.0e-10);CHKERRQ(ierr); 2404825f8a23SLisandro Dalcin ierr = MatView(In, NULL);CHKERRQ(ierr); 2405d69c5d34SMatthew G. Knepley } 2406d69c5d34SMatthew G. Knepley ierr = PetscLogEventEnd(DMPLEX_InterpolatorFEM,dmc,dmf,0,0);CHKERRQ(ierr); 2407d69c5d34SMatthew G. Knepley PetscFunctionReturn(0); 2408d69c5d34SMatthew G. Knepley } 24096c73c22cSMatthew G. Knepley 2410bd041c0cSMatthew G. Knepley PetscErrorCode DMPlexComputeMassMatrixNested(DM dmc, DM dmf, Mat mass, void *user) 2411bd041c0cSMatthew G. Knepley { 2412bd041c0cSMatthew G. Knepley SETERRQ(PetscObjectComm((PetscObject) dmc), PETSC_ERR_SUP, "Laziness"); 2413bd041c0cSMatthew G. Knepley } 2414bd041c0cSMatthew G. Knepley 241568132eb9SMatthew G. Knepley /*@ 241668132eb9SMatthew G. Knepley DMPlexComputeInterpolatorGeneral - Form the local portion of the interpolation matrix I from the coarse DM to a non-nested fine DM. 241768132eb9SMatthew G. Knepley 241868132eb9SMatthew G. Knepley Input Parameters: 241968132eb9SMatthew G. Knepley + dmf - The fine mesh 242068132eb9SMatthew G. Knepley . dmc - The coarse mesh 242168132eb9SMatthew G. Knepley - user - The user context 242268132eb9SMatthew G. Knepley 242368132eb9SMatthew G. Knepley Output Parameter: 242468132eb9SMatthew G. Knepley . In - The interpolation matrix 242568132eb9SMatthew G. Knepley 242668132eb9SMatthew G. Knepley Level: developer 242768132eb9SMatthew G. Knepley 242868132eb9SMatthew G. Knepley .seealso: DMPlexComputeInterpolatorNested(), DMPlexComputeJacobianFEM() 242968132eb9SMatthew G. Knepley @*/ 243068132eb9SMatthew G. Knepley PetscErrorCode DMPlexComputeInterpolatorGeneral(DM dmc, DM dmf, Mat In, void *user) 24314ef9d792SMatthew G. Knepley { 243264e98e1dSMatthew G. Knepley DM_Plex *mesh = (DM_Plex *) dmf->data; 243364e98e1dSMatthew G. Knepley const char *name = "Interpolator"; 24344ef9d792SMatthew G. Knepley PetscDS prob; 24354ef9d792SMatthew G. Knepley PetscSection fsection, csection, globalFSection, globalCSection; 2436e8f14785SLisandro Dalcin PetscHSetIJ ht; 24374ef9d792SMatthew G. Knepley PetscLayout rLayout; 24384ef9d792SMatthew G. Knepley PetscInt *dnz, *onz; 24394ef9d792SMatthew G. Knepley PetscInt locRows, rStart, rEnd; 24404ef9d792SMatthew G. Knepley PetscReal *x, *v0, *J, *invJ, detJ; 24414ef9d792SMatthew G. Knepley PetscReal *v0c, *Jc, *invJc, detJc; 24424ef9d792SMatthew G. Knepley PetscScalar *elemMat; 24434ef9d792SMatthew G. Knepley PetscInt dim, Nf, field, totDim, cStart, cEnd, cell, ccell; 24444ef9d792SMatthew G. Knepley PetscErrorCode ierr; 24454ef9d792SMatthew G. Knepley 24464ef9d792SMatthew G. Knepley PetscFunctionBegin; 244777711781SMatthew G. Knepley ierr = PetscLogEventBegin(DMPLEX_InterpolatorFEM,dmc,dmf,0,0);CHKERRQ(ierr); 24484ef9d792SMatthew G. Knepley ierr = DMGetCoordinateDim(dmc, &dim);CHKERRQ(ierr); 24494ef9d792SMatthew G. Knepley ierr = DMGetDS(dmc, &prob);CHKERRQ(ierr); 24504bee2e38SMatthew G. Knepley ierr = PetscDSGetWorkspace(prob, &x, NULL, NULL, NULL, NULL);CHKERRQ(ierr); 24514ef9d792SMatthew G. Knepley ierr = PetscDSGetNumFields(prob, &Nf);CHKERRQ(ierr); 24524ef9d792SMatthew G. Knepley ierr = PetscMalloc3(dim,&v0,dim*dim,&J,dim*dim,&invJ);CHKERRQ(ierr); 24534ef9d792SMatthew G. Knepley ierr = PetscMalloc3(dim,&v0c,dim*dim,&Jc,dim*dim,&invJc);CHKERRQ(ierr); 245492fd8e1eSJed Brown ierr = DMGetLocalSection(dmf, &fsection);CHKERRQ(ierr); 2455e87a4003SBarry Smith ierr = DMGetGlobalSection(dmf, &globalFSection);CHKERRQ(ierr); 245692fd8e1eSJed Brown ierr = DMGetLocalSection(dmc, &csection);CHKERRQ(ierr); 2457e87a4003SBarry Smith ierr = DMGetGlobalSection(dmc, &globalCSection);CHKERRQ(ierr); 24584ef9d792SMatthew G. Knepley ierr = DMPlexGetHeightStratum(dmf, 0, &cStart, &cEnd);CHKERRQ(ierr); 24594ef9d792SMatthew G. Knepley ierr = PetscDSGetTotalDimension(prob, &totDim);CHKERRQ(ierr); 24609c3cf19fSMatthew G. Knepley ierr = PetscMalloc1(totDim, &elemMat);CHKERRQ(ierr); 24614ef9d792SMatthew G. Knepley 24624ef9d792SMatthew G. Knepley ierr = MatGetLocalSize(In, &locRows, NULL);CHKERRQ(ierr); 24634ef9d792SMatthew G. Knepley ierr = PetscLayoutCreate(PetscObjectComm((PetscObject) In), &rLayout);CHKERRQ(ierr); 24644ef9d792SMatthew G. Knepley ierr = PetscLayoutSetLocalSize(rLayout, locRows);CHKERRQ(ierr); 24654ef9d792SMatthew G. Knepley ierr = PetscLayoutSetBlockSize(rLayout, 1);CHKERRQ(ierr); 24664ef9d792SMatthew G. Knepley ierr = PetscLayoutSetUp(rLayout);CHKERRQ(ierr); 24674ef9d792SMatthew G. Knepley ierr = PetscLayoutGetRange(rLayout, &rStart, &rEnd);CHKERRQ(ierr); 24684ef9d792SMatthew G. Knepley ierr = PetscLayoutDestroy(&rLayout);CHKERRQ(ierr); 24694ef9d792SMatthew G. Knepley ierr = PetscCalloc2(locRows,&dnz,locRows,&onz);CHKERRQ(ierr); 2470e8f14785SLisandro Dalcin ierr = PetscHSetIJCreate(&ht);CHKERRQ(ierr); 24714ef9d792SMatthew G. Knepley for (field = 0; field < Nf; ++field) { 24724ef9d792SMatthew G. Knepley PetscObject obj; 24734ef9d792SMatthew G. Knepley PetscClassId id; 2474c0d7054bSMatthew G. Knepley PetscDualSpace Q = NULL; 24754ef9d792SMatthew G. Knepley PetscQuadrature f; 247617f047d8SMatthew G. Knepley const PetscReal *qpoints; 247717f047d8SMatthew G. Knepley PetscInt Nc, Np, fpdim, i, d; 24784ef9d792SMatthew G. Knepley 24794ef9d792SMatthew G. Knepley ierr = PetscDSGetDiscretization(prob, field, &obj);CHKERRQ(ierr); 24804ef9d792SMatthew G. Knepley ierr = PetscObjectGetClassId(obj, &id);CHKERRQ(ierr); 24814ef9d792SMatthew G. Knepley if (id == PETSCFE_CLASSID) { 24824ef9d792SMatthew G. Knepley PetscFE fe = (PetscFE) obj; 24834ef9d792SMatthew G. Knepley 24844ef9d792SMatthew G. Knepley ierr = PetscFEGetDualSpace(fe, &Q);CHKERRQ(ierr); 24854ef9d792SMatthew G. Knepley ierr = PetscFEGetNumComponents(fe, &Nc);CHKERRQ(ierr); 24864ef9d792SMatthew G. Knepley } else if (id == PETSCFV_CLASSID) { 24874ef9d792SMatthew G. Knepley PetscFV fv = (PetscFV) obj; 24884ef9d792SMatthew G. Knepley 24894ef9d792SMatthew G. Knepley ierr = PetscFVGetDualSpace(fv, &Q);CHKERRQ(ierr); 24904ef9d792SMatthew G. Knepley Nc = 1; 24914ef9d792SMatthew G. Knepley } 24924ef9d792SMatthew G. Knepley ierr = PetscDualSpaceGetDimension(Q, &fpdim);CHKERRQ(ierr); 24934ef9d792SMatthew G. Knepley /* For each fine grid cell */ 24944ef9d792SMatthew G. Knepley for (cell = cStart; cell < cEnd; ++cell) { 24954ef9d792SMatthew G. Knepley PetscInt *findices, *cindices; 24964ef9d792SMatthew G. Knepley PetscInt numFIndices, numCIndices; 24974ef9d792SMatthew G. Knepley 24986ecaa68aSToby Isaac ierr = DMPlexGetClosureIndices(dmf, fsection, globalFSection, cell, &numFIndices, &findices, NULL);CHKERRQ(ierr); 24994ef9d792SMatthew G. Knepley ierr = DMPlexComputeCellGeometryFEM(dmf, cell, NULL, v0, J, invJ, &detJ);CHKERRQ(ierr); 2500ff1e0c32SBarry Smith if (numFIndices != fpdim) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of fine indices %D != %D dual basis vecs", numFIndices, fpdim); 25014ef9d792SMatthew G. Knepley for (i = 0; i < fpdim; ++i) { 25024ef9d792SMatthew G. Knepley Vec pointVec; 25034ef9d792SMatthew G. Knepley PetscScalar *pV; 25043a93e3b7SToby Isaac PetscSF coarseCellSF = NULL; 25053a93e3b7SToby Isaac const PetscSFNode *coarseCells; 25069c3cf19fSMatthew G. Knepley PetscInt numCoarseCells, q, c; 25074ef9d792SMatthew G. Knepley 25084ef9d792SMatthew G. Knepley /* Get points from the dual basis functional quadrature */ 25094ef9d792SMatthew G. Knepley ierr = PetscDualSpaceGetFunctional(Q, i, &f);CHKERRQ(ierr); 25109c3cf19fSMatthew G. Knepley ierr = PetscQuadratureGetData(f, NULL, NULL, &Np, &qpoints, NULL);CHKERRQ(ierr); 25114ef9d792SMatthew G. Knepley ierr = VecCreateSeq(PETSC_COMM_SELF, Np*dim, &pointVec);CHKERRQ(ierr); 25124ef9d792SMatthew G. Knepley ierr = VecSetBlockSize(pointVec, dim);CHKERRQ(ierr); 25134ef9d792SMatthew G. Knepley ierr = VecGetArray(pointVec, &pV);CHKERRQ(ierr); 25144ef9d792SMatthew G. Knepley for (q = 0; q < Np; ++q) { 2515c330f8ffSToby Isaac const PetscReal xi0[3] = {-1., -1., -1.}; 2516c330f8ffSToby Isaac 25174ef9d792SMatthew G. Knepley /* Transform point to real space */ 2518c330f8ffSToby Isaac CoordinatesRefToReal(dim, dim, xi0, v0, J, &qpoints[q*dim], x); 25194ef9d792SMatthew G. Knepley for (d = 0; d < dim; ++d) pV[q*dim+d] = x[d]; 25204ef9d792SMatthew G. Knepley } 25214ef9d792SMatthew G. Knepley ierr = VecRestoreArray(pointVec, &pV);CHKERRQ(ierr); 25224ef9d792SMatthew G. Knepley /* Get set of coarse cells that overlap points (would like to group points by coarse cell) */ 25231555c271SMatthew G. Knepley /* OPT: Pack all quad points from fine cell */ 252462a38674SMatthew G. Knepley ierr = DMLocatePoints(dmc, pointVec, DM_POINTLOCATION_NEAREST, &coarseCellSF);CHKERRQ(ierr); 25253a93e3b7SToby Isaac ierr = PetscSFViewFromOptions(coarseCellSF, NULL, "-interp_sf_view");CHKERRQ(ierr); 25264ef9d792SMatthew G. Knepley /* Update preallocation info */ 25273a93e3b7SToby Isaac ierr = PetscSFGetGraph(coarseCellSF, NULL, &numCoarseCells, NULL, &coarseCells);CHKERRQ(ierr); 25283a93e3b7SToby Isaac if (numCoarseCells != Np) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Not all closure points located"); 25299c3cf19fSMatthew G. Knepley { 2530e8f14785SLisandro Dalcin PetscHashIJKey key; 2531e8f14785SLisandro Dalcin PetscBool missing; 25324ef9d792SMatthew G. Knepley 2533e8f14785SLisandro Dalcin key.i = findices[i]; 2534e8f14785SLisandro Dalcin if (key.i >= 0) { 25354ef9d792SMatthew G. Knepley /* Get indices for coarse elements */ 25364ef9d792SMatthew G. Knepley for (ccell = 0; ccell < numCoarseCells; ++ccell) { 25373a93e3b7SToby Isaac ierr = DMPlexGetClosureIndices(dmc, csection, globalCSection, coarseCells[ccell].index, &numCIndices, &cindices, NULL);CHKERRQ(ierr); 25384ef9d792SMatthew G. Knepley for (c = 0; c < numCIndices; ++c) { 2539e8f14785SLisandro Dalcin key.j = cindices[c]; 2540e8f14785SLisandro Dalcin if (key.j < 0) continue; 2541e8f14785SLisandro Dalcin ierr = PetscHSetIJQueryAdd(ht, key, &missing);CHKERRQ(ierr); 25424ef9d792SMatthew G. Knepley if (missing) { 2543e8f14785SLisandro Dalcin if ((key.j >= rStart) && (key.j < rEnd)) ++dnz[key.i-rStart]; 2544e8f14785SLisandro Dalcin else ++onz[key.i-rStart]; 25454ef9d792SMatthew G. Knepley } 25464ef9d792SMatthew G. Knepley } 25473a93e3b7SToby Isaac ierr = DMPlexRestoreClosureIndices(dmc, csection, globalCSection, coarseCells[ccell].index, &numCIndices, &cindices, NULL);CHKERRQ(ierr); 25484ef9d792SMatthew G. Knepley } 25494ef9d792SMatthew G. Knepley } 25508c543595SMatthew G. Knepley } 25513a93e3b7SToby Isaac ierr = PetscSFDestroy(&coarseCellSF);CHKERRQ(ierr); 25524ef9d792SMatthew G. Knepley ierr = VecDestroy(&pointVec);CHKERRQ(ierr); 25534ef9d792SMatthew G. Knepley } 255446bdb399SToby Isaac ierr = DMPlexRestoreClosureIndices(dmf, fsection, globalFSection, cell, &numFIndices, &findices, NULL);CHKERRQ(ierr); 25554ef9d792SMatthew G. Knepley } 25564ef9d792SMatthew G. Knepley } 2557e8f14785SLisandro Dalcin ierr = PetscHSetIJDestroy(&ht);CHKERRQ(ierr); 25584ef9d792SMatthew G. Knepley ierr = MatXAIJSetPreallocation(In, 1, dnz, onz, NULL, NULL);CHKERRQ(ierr); 25594ef9d792SMatthew G. Knepley ierr = MatSetOption(In, MAT_NEW_NONZERO_ALLOCATION_ERR,PETSC_TRUE);CHKERRQ(ierr); 25604ef9d792SMatthew G. Knepley ierr = PetscFree2(dnz,onz);CHKERRQ(ierr); 25614ef9d792SMatthew G. Knepley for (field = 0; field < Nf; ++field) { 25624ef9d792SMatthew G. Knepley PetscObject obj; 25634ef9d792SMatthew G. Knepley PetscClassId id; 2564c0d7054bSMatthew G. Knepley PetscDualSpace Q = NULL; 2565ef0bb6c7SMatthew G. Knepley PetscTabulation T = NULL; 25664ef9d792SMatthew G. Knepley PetscQuadrature f; 25674ef9d792SMatthew G. Knepley const PetscReal *qpoints, *qweights; 25689c3cf19fSMatthew G. Knepley PetscInt Nc, qNc, Np, fpdim, i, d; 25694ef9d792SMatthew G. Knepley 25704ef9d792SMatthew G. Knepley ierr = PetscDSGetDiscretization(prob, field, &obj);CHKERRQ(ierr); 25714ef9d792SMatthew G. Knepley ierr = PetscObjectGetClassId(obj, &id);CHKERRQ(ierr); 25724ef9d792SMatthew G. Knepley if (id == PETSCFE_CLASSID) { 25734ef9d792SMatthew G. Knepley PetscFE fe = (PetscFE) obj; 25744ef9d792SMatthew G. Knepley 25754ef9d792SMatthew G. Knepley ierr = PetscFEGetDualSpace(fe, &Q);CHKERRQ(ierr); 25764ef9d792SMatthew G. Knepley ierr = PetscFEGetNumComponents(fe, &Nc);CHKERRQ(ierr); 2577ef0bb6c7SMatthew G. Knepley ierr = PetscFECreateTabulation(fe, 1, 1, x, 0, &T);CHKERRQ(ierr); 25784ef9d792SMatthew G. Knepley } else if (id == PETSCFV_CLASSID) { 25794ef9d792SMatthew G. Knepley PetscFV fv = (PetscFV) obj; 25804ef9d792SMatthew G. Knepley 25814ef9d792SMatthew G. Knepley ierr = PetscFVGetDualSpace(fv, &Q);CHKERRQ(ierr); 25824ef9d792SMatthew G. Knepley Nc = 1; 2583ff1e0c32SBarry Smith } else SETERRQ1(PetscObjectComm((PetscObject)dmc),PETSC_ERR_ARG_WRONG,"Unknown discretization type for field %D",field); 25844ef9d792SMatthew G. Knepley ierr = PetscDualSpaceGetDimension(Q, &fpdim);CHKERRQ(ierr); 25854ef9d792SMatthew G. Knepley /* For each fine grid cell */ 25864ef9d792SMatthew G. Knepley for (cell = cStart; cell < cEnd; ++cell) { 25874ef9d792SMatthew G. Knepley PetscInt *findices, *cindices; 25884ef9d792SMatthew G. Knepley PetscInt numFIndices, numCIndices; 25894ef9d792SMatthew G. Knepley 25906ecaa68aSToby Isaac ierr = DMPlexGetClosureIndices(dmf, fsection, globalFSection, cell, &numFIndices, &findices, NULL);CHKERRQ(ierr); 25914ef9d792SMatthew G. Knepley ierr = DMPlexComputeCellGeometryFEM(dmf, cell, NULL, v0, J, invJ, &detJ);CHKERRQ(ierr); 2592ff1e0c32SBarry Smith if (numFIndices != fpdim) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of fine indices %D != %D dual basis vecs", numFIndices, fpdim); 25934ef9d792SMatthew G. Knepley for (i = 0; i < fpdim; ++i) { 25944ef9d792SMatthew G. Knepley Vec pointVec; 25954ef9d792SMatthew G. Knepley PetscScalar *pV; 259612111d7cSToby Isaac PetscSF coarseCellSF = NULL; 25973a93e3b7SToby Isaac const PetscSFNode *coarseCells; 259817f047d8SMatthew G. Knepley PetscInt numCoarseCells, cpdim, q, c, j; 25994ef9d792SMatthew G. Knepley 26004ef9d792SMatthew G. Knepley /* Get points from the dual basis functional quadrature */ 26014ef9d792SMatthew G. Knepley ierr = PetscDualSpaceGetFunctional(Q, i, &f);CHKERRQ(ierr); 26029c3cf19fSMatthew G. Knepley ierr = PetscQuadratureGetData(f, NULL, &qNc, &Np, &qpoints, &qweights);CHKERRQ(ierr); 26039c3cf19fSMatthew G. Knepley if (qNc != Nc) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of components in quadrature %D does not match coarse field %D", qNc, Nc); 26044ef9d792SMatthew G. Knepley ierr = VecCreateSeq(PETSC_COMM_SELF, Np*dim, &pointVec);CHKERRQ(ierr); 26054ef9d792SMatthew G. Knepley ierr = VecSetBlockSize(pointVec, dim);CHKERRQ(ierr); 26064ef9d792SMatthew G. Knepley ierr = VecGetArray(pointVec, &pV);CHKERRQ(ierr); 26074ef9d792SMatthew G. Knepley for (q = 0; q < Np; ++q) { 2608c330f8ffSToby Isaac const PetscReal xi0[3] = {-1., -1., -1.}; 2609c330f8ffSToby Isaac 26104ef9d792SMatthew G. Knepley /* Transform point to real space */ 2611c330f8ffSToby Isaac CoordinatesRefToReal(dim, dim, xi0, v0, J, &qpoints[q*dim], x); 26124ef9d792SMatthew G. Knepley for (d = 0; d < dim; ++d) pV[q*dim+d] = x[d]; 26134ef9d792SMatthew G. Knepley } 26144ef9d792SMatthew G. Knepley ierr = VecRestoreArray(pointVec, &pV);CHKERRQ(ierr); 26154ef9d792SMatthew G. Knepley /* Get set of coarse cells that overlap points (would like to group points by coarse cell) */ 26161555c271SMatthew G. Knepley /* OPT: Read this out from preallocation information */ 261762a38674SMatthew G. Knepley ierr = DMLocatePoints(dmc, pointVec, DM_POINTLOCATION_NEAREST, &coarseCellSF);CHKERRQ(ierr); 26184ef9d792SMatthew G. Knepley /* Update preallocation info */ 26193a93e3b7SToby Isaac ierr = PetscSFGetGraph(coarseCellSF, NULL, &numCoarseCells, NULL, &coarseCells);CHKERRQ(ierr); 26203a93e3b7SToby Isaac if (numCoarseCells != Np) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Not all closure points located"); 26214ef9d792SMatthew G. Knepley ierr = VecGetArray(pointVec, &pV);CHKERRQ(ierr); 26224ef9d792SMatthew G. Knepley for (ccell = 0; ccell < numCoarseCells; ++ccell) { 2623826eb36dSMatthew G. Knepley PetscReal pVReal[3]; 2624c330f8ffSToby Isaac const PetscReal xi0[3] = {-1., -1., -1.}; 2625826eb36dSMatthew G. Knepley 26263a93e3b7SToby Isaac ierr = DMPlexGetClosureIndices(dmc, csection, globalCSection, coarseCells[ccell].index, &numCIndices, &cindices, NULL);CHKERRQ(ierr); 26274ef9d792SMatthew G. Knepley /* Transform points from real space to coarse reference space */ 26283a93e3b7SToby Isaac ierr = DMPlexComputeCellGeometryFEM(dmc, coarseCells[ccell].index, NULL, v0c, Jc, invJc, &detJc);CHKERRQ(ierr); 2629e2d86523SMatthew G. Knepley for (d = 0; d < dim; ++d) pVReal[d] = PetscRealPart(pV[ccell*dim+d]); 2630c330f8ffSToby Isaac CoordinatesRealToRef(dim, dim, xi0, v0c, invJc, pVReal, x); 26314ef9d792SMatthew G. Knepley 26324ef9d792SMatthew G. Knepley if (id == PETSCFE_CLASSID) { 26334ef9d792SMatthew G. Knepley PetscFE fe = (PetscFE) obj; 26344ef9d792SMatthew G. Knepley 26354ef9d792SMatthew G. Knepley /* Evaluate coarse basis on contained point */ 26364ef9d792SMatthew G. Knepley ierr = PetscFEGetDimension(fe, &cpdim);CHKERRQ(ierr); 2637ef0bb6c7SMatthew G. Knepley ierr = PetscFEComputeTabulation(fe, 1, x, 0, T);CHKERRQ(ierr); 2638580bdb30SBarry Smith ierr = PetscArrayzero(elemMat, cpdim);CHKERRQ(ierr); 26394ef9d792SMatthew G. Knepley /* Get elemMat entries by multiplying by weight */ 26404ef9d792SMatthew G. Knepley for (j = 0; j < cpdim; ++j) { 2641ef0bb6c7SMatthew G. Knepley for (c = 0; c < Nc; ++c) elemMat[j] += T->T[0][j*Nc + c]*qweights[ccell*qNc + c]; 26424ef9d792SMatthew G. Knepley } 26434ef9d792SMatthew G. Knepley } else { 26444ef9d792SMatthew G. Knepley cpdim = 1; 26454ef9d792SMatthew G. Knepley for (j = 0; j < cpdim; ++j) { 26469c3cf19fSMatthew G. Knepley for (c = 0; c < Nc; ++c) elemMat[j] += 1.0*qweights[ccell*qNc + c]; 26474ef9d792SMatthew G. Knepley } 26484ef9d792SMatthew G. Knepley } 26494ef9d792SMatthew G. Knepley /* Update interpolator */ 26509c3cf19fSMatthew G. Knepley if (mesh->printFEM > 1) {ierr = DMPrintCellMatrix(cell, name, 1, numCIndices, elemMat);CHKERRQ(ierr);} 26519c3cf19fSMatthew G. Knepley if (numCIndices != cpdim) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Number of element matrix columns %D != %D", numCIndices, cpdim); 26529c3cf19fSMatthew G. Knepley ierr = MatSetValues(In, 1, &findices[i], numCIndices, cindices, elemMat, INSERT_VALUES);CHKERRQ(ierr); 26533a93e3b7SToby Isaac ierr = DMPlexRestoreClosureIndices(dmc, csection, globalCSection, coarseCells[ccell].index, &numCIndices, &cindices, NULL);CHKERRQ(ierr); 26544ef9d792SMatthew G. Knepley } 26554ef9d792SMatthew G. Knepley ierr = VecRestoreArray(pointVec, &pV);CHKERRQ(ierr); 26563a93e3b7SToby Isaac ierr = PetscSFDestroy(&coarseCellSF);CHKERRQ(ierr); 26574ef9d792SMatthew G. Knepley ierr = VecDestroy(&pointVec);CHKERRQ(ierr); 26584ef9d792SMatthew G. Knepley } 265946bdb399SToby Isaac ierr = DMPlexRestoreClosureIndices(dmf, fsection, globalFSection, cell, &numFIndices, &findices, NULL);CHKERRQ(ierr); 26604ef9d792SMatthew G. Knepley } 2661ef0bb6c7SMatthew G. Knepley if (id == PETSCFE_CLASSID) {ierr = PetscTabulationDestroy(&T);CHKERRQ(ierr);} 26624ef9d792SMatthew G. Knepley } 26634ef9d792SMatthew G. Knepley ierr = PetscFree3(v0,J,invJ);CHKERRQ(ierr); 26644ef9d792SMatthew G. Knepley ierr = PetscFree3(v0c,Jc,invJc);CHKERRQ(ierr); 26654ef9d792SMatthew G. Knepley ierr = PetscFree(elemMat);CHKERRQ(ierr); 26664ef9d792SMatthew G. Knepley ierr = MatAssemblyBegin(In, MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 26674ef9d792SMatthew G. Knepley ierr = MatAssemblyEnd(In, MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 266877711781SMatthew G. Knepley ierr = PetscLogEventEnd(DMPLEX_InterpolatorFEM,dmc,dmf,0,0);CHKERRQ(ierr); 26694ef9d792SMatthew G. Knepley PetscFunctionReturn(0); 26704ef9d792SMatthew G. Knepley } 26714ef9d792SMatthew G. Knepley 267246fa42a0SMatthew G. Knepley /*@ 2673bd041c0cSMatthew G. Knepley DMPlexComputeMassMatrixGeneral - Form the local portion of the mass matrix M from the coarse DM to a non-nested fine DM. 2674bd041c0cSMatthew G. Knepley 2675bd041c0cSMatthew G. Knepley Input Parameters: 2676bd041c0cSMatthew G. Knepley + dmf - The fine mesh 2677bd041c0cSMatthew G. Knepley . dmc - The coarse mesh 2678bd041c0cSMatthew G. Knepley - user - The user context 2679bd041c0cSMatthew G. Knepley 2680bd041c0cSMatthew G. Knepley Output Parameter: 2681bd041c0cSMatthew G. Knepley . mass - The mass matrix 2682bd041c0cSMatthew G. Knepley 2683bd041c0cSMatthew G. Knepley Level: developer 2684bd041c0cSMatthew G. Knepley 2685bd041c0cSMatthew G. Knepley .seealso: DMPlexComputeMassMatrixNested(), DMPlexComputeInterpolatorNested(), DMPlexComputeInterpolatorGeneral(), DMPlexComputeJacobianFEM() 2686bd041c0cSMatthew G. Knepley @*/ 2687bd041c0cSMatthew G. Knepley PetscErrorCode DMPlexComputeMassMatrixGeneral(DM dmc, DM dmf, Mat mass, void *user) 2688bd041c0cSMatthew G. Knepley { 2689bd041c0cSMatthew G. Knepley DM_Plex *mesh = (DM_Plex *) dmf->data; 2690bd041c0cSMatthew G. Knepley const char *name = "Mass Matrix"; 2691bd041c0cSMatthew G. Knepley PetscDS prob; 2692bd041c0cSMatthew G. Knepley PetscSection fsection, csection, globalFSection, globalCSection; 2693e8f14785SLisandro Dalcin PetscHSetIJ ht; 2694bd041c0cSMatthew G. Knepley PetscLayout rLayout; 2695bd041c0cSMatthew G. Knepley PetscInt *dnz, *onz; 2696bd041c0cSMatthew G. Knepley PetscInt locRows, rStart, rEnd; 2697bd041c0cSMatthew G. Knepley PetscReal *x, *v0, *J, *invJ, detJ; 2698bd041c0cSMatthew G. Knepley PetscReal *v0c, *Jc, *invJc, detJc; 2699bd041c0cSMatthew G. Knepley PetscScalar *elemMat; 2700bd041c0cSMatthew G. Knepley PetscInt dim, Nf, field, totDim, cStart, cEnd, cell, ccell; 2701bd041c0cSMatthew G. Knepley PetscErrorCode ierr; 2702bd041c0cSMatthew G. Knepley 2703bd041c0cSMatthew G. Knepley PetscFunctionBegin; 2704bd041c0cSMatthew G. Knepley ierr = DMGetCoordinateDim(dmc, &dim);CHKERRQ(ierr); 2705bd041c0cSMatthew G. Knepley ierr = DMGetDS(dmc, &prob);CHKERRQ(ierr); 27064bee2e38SMatthew G. Knepley ierr = PetscDSGetWorkspace(prob, &x, NULL, NULL, NULL, NULL);CHKERRQ(ierr); 2707bd041c0cSMatthew G. Knepley ierr = PetscDSGetNumFields(prob, &Nf);CHKERRQ(ierr); 2708bd041c0cSMatthew G. Knepley ierr = PetscMalloc3(dim,&v0,dim*dim,&J,dim*dim,&invJ);CHKERRQ(ierr); 2709bd041c0cSMatthew G. Knepley ierr = PetscMalloc3(dim,&v0c,dim*dim,&Jc,dim*dim,&invJc);CHKERRQ(ierr); 271092fd8e1eSJed Brown ierr = DMGetLocalSection(dmf, &fsection);CHKERRQ(ierr); 2711e87a4003SBarry Smith ierr = DMGetGlobalSection(dmf, &globalFSection);CHKERRQ(ierr); 271292fd8e1eSJed Brown ierr = DMGetLocalSection(dmc, &csection);CHKERRQ(ierr); 2713e87a4003SBarry Smith ierr = DMGetGlobalSection(dmc, &globalCSection);CHKERRQ(ierr); 2714bd041c0cSMatthew G. Knepley ierr = DMPlexGetHeightStratum(dmf, 0, &cStart, &cEnd);CHKERRQ(ierr); 2715bd041c0cSMatthew G. Knepley ierr = PetscDSGetTotalDimension(prob, &totDim);CHKERRQ(ierr); 2716bd041c0cSMatthew G. Knepley ierr = PetscMalloc1(totDim, &elemMat);CHKERRQ(ierr); 2717bd041c0cSMatthew G. Knepley 2718bd041c0cSMatthew G. Knepley ierr = MatGetLocalSize(mass, &locRows, NULL);CHKERRQ(ierr); 2719bd041c0cSMatthew G. Knepley ierr = PetscLayoutCreate(PetscObjectComm((PetscObject) mass), &rLayout);CHKERRQ(ierr); 2720bd041c0cSMatthew G. Knepley ierr = PetscLayoutSetLocalSize(rLayout, locRows);CHKERRQ(ierr); 2721bd041c0cSMatthew G. Knepley ierr = PetscLayoutSetBlockSize(rLayout, 1);CHKERRQ(ierr); 2722bd041c0cSMatthew G. Knepley ierr = PetscLayoutSetUp(rLayout);CHKERRQ(ierr); 2723bd041c0cSMatthew G. Knepley ierr = PetscLayoutGetRange(rLayout, &rStart, &rEnd);CHKERRQ(ierr); 2724bd041c0cSMatthew G. Knepley ierr = PetscLayoutDestroy(&rLayout);CHKERRQ(ierr); 2725bd041c0cSMatthew G. Knepley ierr = PetscCalloc2(locRows,&dnz,locRows,&onz);CHKERRQ(ierr); 2726e8f14785SLisandro Dalcin ierr = PetscHSetIJCreate(&ht);CHKERRQ(ierr); 2727bd041c0cSMatthew G. Knepley for (field = 0; field < Nf; ++field) { 2728bd041c0cSMatthew G. Knepley PetscObject obj; 2729bd041c0cSMatthew G. Knepley PetscClassId id; 2730bd041c0cSMatthew G. Knepley PetscQuadrature quad; 2731bd041c0cSMatthew G. Knepley const PetscReal *qpoints; 2732bd041c0cSMatthew G. Knepley PetscInt Nq, Nc, i, d; 2733bd041c0cSMatthew G. Knepley 2734bd041c0cSMatthew G. Knepley ierr = PetscDSGetDiscretization(prob, field, &obj);CHKERRQ(ierr); 2735bd041c0cSMatthew G. Knepley ierr = PetscObjectGetClassId(obj, &id);CHKERRQ(ierr); 2736bd041c0cSMatthew G. Knepley if (id == PETSCFE_CLASSID) {ierr = PetscFEGetQuadrature((PetscFE) obj, &quad);CHKERRQ(ierr);} 2737bd041c0cSMatthew G. Knepley else {ierr = PetscFVGetQuadrature((PetscFV) obj, &quad);CHKERRQ(ierr);} 2738bd041c0cSMatthew G. Knepley ierr = PetscQuadratureGetData(quad, NULL, &Nc, &Nq, &qpoints, NULL);CHKERRQ(ierr); 2739bd041c0cSMatthew G. Knepley /* For each fine grid cell */ 2740bd041c0cSMatthew G. Knepley for (cell = cStart; cell < cEnd; ++cell) { 2741bd041c0cSMatthew G. Knepley Vec pointVec; 2742bd041c0cSMatthew G. Knepley PetscScalar *pV; 2743bd041c0cSMatthew G. Knepley PetscSF coarseCellSF = NULL; 2744bd041c0cSMatthew G. Knepley const PetscSFNode *coarseCells; 2745bd041c0cSMatthew G. Knepley PetscInt numCoarseCells, q, c; 2746bd041c0cSMatthew G. Knepley PetscInt *findices, *cindices; 2747bd041c0cSMatthew G. Knepley PetscInt numFIndices, numCIndices; 2748bd041c0cSMatthew G. Knepley 2749bd041c0cSMatthew G. Knepley ierr = DMPlexGetClosureIndices(dmf, fsection, globalFSection, cell, &numFIndices, &findices, NULL);CHKERRQ(ierr); 2750bd041c0cSMatthew G. Knepley ierr = DMPlexComputeCellGeometryFEM(dmf, cell, NULL, v0, J, invJ, &detJ);CHKERRQ(ierr); 2751bd041c0cSMatthew G. Knepley /* Get points from the quadrature */ 2752bd041c0cSMatthew G. Knepley ierr = VecCreateSeq(PETSC_COMM_SELF, Nq*dim, &pointVec);CHKERRQ(ierr); 2753bd041c0cSMatthew G. Knepley ierr = VecSetBlockSize(pointVec, dim);CHKERRQ(ierr); 2754bd041c0cSMatthew G. Knepley ierr = VecGetArray(pointVec, &pV);CHKERRQ(ierr); 2755bd041c0cSMatthew G. Knepley for (q = 0; q < Nq; ++q) { 2756c330f8ffSToby Isaac const PetscReal xi0[3] = {-1., -1., -1.}; 2757c330f8ffSToby Isaac 2758bd041c0cSMatthew G. Knepley /* Transform point to real space */ 2759c330f8ffSToby Isaac CoordinatesRefToReal(dim, dim, xi0, v0, J, &qpoints[q*dim], x); 2760bd041c0cSMatthew G. Knepley for (d = 0; d < dim; ++d) pV[q*dim+d] = x[d]; 2761bd041c0cSMatthew G. Knepley } 2762bd041c0cSMatthew G. Knepley ierr = VecRestoreArray(pointVec, &pV);CHKERRQ(ierr); 2763bd041c0cSMatthew G. Knepley /* Get set of coarse cells that overlap points (would like to group points by coarse cell) */ 2764bd041c0cSMatthew G. Knepley ierr = DMLocatePoints(dmc, pointVec, DM_POINTLOCATION_NEAREST, &coarseCellSF);CHKERRQ(ierr); 2765bd041c0cSMatthew G. Knepley ierr = PetscSFViewFromOptions(coarseCellSF, NULL, "-interp_sf_view");CHKERRQ(ierr); 2766bd041c0cSMatthew G. Knepley /* Update preallocation info */ 2767bd041c0cSMatthew G. Knepley ierr = PetscSFGetGraph(coarseCellSF, NULL, &numCoarseCells, NULL, &coarseCells);CHKERRQ(ierr); 2768bd041c0cSMatthew G. Knepley if (numCoarseCells != Nq) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Not all closure points located"); 2769bd041c0cSMatthew G. Knepley { 2770e8f14785SLisandro Dalcin PetscHashIJKey key; 2771e8f14785SLisandro Dalcin PetscBool missing; 2772bd041c0cSMatthew G. Knepley 2773bd041c0cSMatthew G. Knepley for (i = 0; i < numFIndices; ++i) { 2774e8f14785SLisandro Dalcin key.i = findices[i]; 2775e8f14785SLisandro Dalcin if (key.i >= 0) { 2776bd041c0cSMatthew G. Knepley /* Get indices for coarse elements */ 2777bd041c0cSMatthew G. Knepley for (ccell = 0; ccell < numCoarseCells; ++ccell) { 2778bd041c0cSMatthew G. Knepley ierr = DMPlexGetClosureIndices(dmc, csection, globalCSection, coarseCells[ccell].index, &numCIndices, &cindices, NULL);CHKERRQ(ierr); 2779bd041c0cSMatthew G. Knepley for (c = 0; c < numCIndices; ++c) { 2780e8f14785SLisandro Dalcin key.j = cindices[c]; 2781e8f14785SLisandro Dalcin if (key.j < 0) continue; 2782e8f14785SLisandro Dalcin ierr = PetscHSetIJQueryAdd(ht, key, &missing);CHKERRQ(ierr); 2783bd041c0cSMatthew G. Knepley if (missing) { 2784e8f14785SLisandro Dalcin if ((key.j >= rStart) && (key.j < rEnd)) ++dnz[key.i-rStart]; 2785e8f14785SLisandro Dalcin else ++onz[key.i-rStart]; 2786bd041c0cSMatthew G. Knepley } 2787bd041c0cSMatthew G. Knepley } 2788bd041c0cSMatthew G. Knepley ierr = DMPlexRestoreClosureIndices(dmc, csection, globalCSection, coarseCells[ccell].index, &numCIndices, &cindices, NULL);CHKERRQ(ierr); 2789bd041c0cSMatthew G. Knepley } 2790bd041c0cSMatthew G. Knepley } 2791bd041c0cSMatthew G. Knepley } 2792bd041c0cSMatthew G. Knepley } 2793bd041c0cSMatthew G. Knepley ierr = PetscSFDestroy(&coarseCellSF);CHKERRQ(ierr); 2794bd041c0cSMatthew G. Knepley ierr = VecDestroy(&pointVec);CHKERRQ(ierr); 2795bd041c0cSMatthew G. Knepley ierr = DMPlexRestoreClosureIndices(dmf, fsection, globalFSection, cell, &numFIndices, &findices, NULL);CHKERRQ(ierr); 2796bd041c0cSMatthew G. Knepley } 2797bd041c0cSMatthew G. Knepley } 2798e8f14785SLisandro Dalcin ierr = PetscHSetIJDestroy(&ht);CHKERRQ(ierr); 2799bd041c0cSMatthew G. Knepley ierr = MatXAIJSetPreallocation(mass, 1, dnz, onz, NULL, NULL);CHKERRQ(ierr); 2800bd041c0cSMatthew G. Knepley ierr = MatSetOption(mass, MAT_NEW_NONZERO_ALLOCATION_ERR,PETSC_TRUE);CHKERRQ(ierr); 2801bd041c0cSMatthew G. Knepley ierr = PetscFree2(dnz,onz);CHKERRQ(ierr); 2802bd041c0cSMatthew G. Knepley for (field = 0; field < Nf; ++field) { 2803bd041c0cSMatthew G. Knepley PetscObject obj; 2804bd041c0cSMatthew G. Knepley PetscClassId id; 2805ef0bb6c7SMatthew G. Knepley PetscTabulation T, Tfine; 2806bd041c0cSMatthew G. Knepley PetscQuadrature quad; 2807bd041c0cSMatthew G. Knepley const PetscReal *qpoints, *qweights; 2808bd041c0cSMatthew G. Knepley PetscInt Nq, Nc, i, d; 2809bd041c0cSMatthew G. Knepley 2810bd041c0cSMatthew G. Knepley ierr = PetscDSGetDiscretization(prob, field, &obj);CHKERRQ(ierr); 2811bd041c0cSMatthew G. Knepley ierr = PetscObjectGetClassId(obj, &id);CHKERRQ(ierr); 2812ef0bb6c7SMatthew G. Knepley if (id == PETSCFE_CLASSID) { 2813ef0bb6c7SMatthew G. Knepley ierr = PetscFEGetQuadrature((PetscFE) obj, &quad);CHKERRQ(ierr); 2814ef0bb6c7SMatthew G. Knepley ierr = PetscFEGetCellTabulation((PetscFE) obj, &Tfine);CHKERRQ(ierr); 2815ef0bb6c7SMatthew G. Knepley ierr = PetscFECreateTabulation((PetscFE) obj, 1, 1, x, 0, &T);CHKERRQ(ierr); 2816ef0bb6c7SMatthew G. Knepley } else { 2817ef0bb6c7SMatthew G. Knepley ierr = PetscFVGetQuadrature((PetscFV) obj, &quad);CHKERRQ(ierr); 2818ef0bb6c7SMatthew G. Knepley } 2819bd041c0cSMatthew G. Knepley ierr = PetscQuadratureGetData(quad, NULL, &Nc, &Nq, &qpoints, &qweights);CHKERRQ(ierr); 2820bd041c0cSMatthew G. Knepley /* For each fine grid cell */ 2821bd041c0cSMatthew G. Knepley for (cell = cStart; cell < cEnd; ++cell) { 2822bd041c0cSMatthew G. Knepley Vec pointVec; 2823bd041c0cSMatthew G. Knepley PetscScalar *pV; 2824bd041c0cSMatthew G. Knepley PetscSF coarseCellSF = NULL; 2825bd041c0cSMatthew G. Knepley const PetscSFNode *coarseCells; 2826bd041c0cSMatthew G. Knepley PetscInt numCoarseCells, cpdim, q, c, j; 2827bd041c0cSMatthew G. Knepley PetscInt *findices, *cindices; 2828bd041c0cSMatthew G. Knepley PetscInt numFIndices, numCIndices; 2829bd041c0cSMatthew G. Knepley 2830bd041c0cSMatthew G. Knepley ierr = DMPlexGetClosureIndices(dmf, fsection, globalFSection, cell, &numFIndices, &findices, NULL);CHKERRQ(ierr); 2831bd041c0cSMatthew G. Knepley ierr = DMPlexComputeCellGeometryFEM(dmf, cell, NULL, v0, J, invJ, &detJ);CHKERRQ(ierr); 2832bd041c0cSMatthew G. Knepley /* Get points from the quadrature */ 2833bd041c0cSMatthew G. Knepley ierr = VecCreateSeq(PETSC_COMM_SELF, Nq*dim, &pointVec);CHKERRQ(ierr); 2834bd041c0cSMatthew G. Knepley ierr = VecSetBlockSize(pointVec, dim);CHKERRQ(ierr); 2835bd041c0cSMatthew G. Knepley ierr = VecGetArray(pointVec, &pV);CHKERRQ(ierr); 2836bd041c0cSMatthew G. Knepley for (q = 0; q < Nq; ++q) { 2837c330f8ffSToby Isaac const PetscReal xi0[3] = {-1., -1., -1.}; 2838c330f8ffSToby Isaac 2839bd041c0cSMatthew G. Knepley /* Transform point to real space */ 2840c330f8ffSToby Isaac CoordinatesRefToReal(dim, dim, xi0, v0, J, &qpoints[q*dim], x); 2841bd041c0cSMatthew G. Knepley for (d = 0; d < dim; ++d) pV[q*dim+d] = x[d]; 2842bd041c0cSMatthew G. Knepley } 2843bd041c0cSMatthew G. Knepley ierr = VecRestoreArray(pointVec, &pV);CHKERRQ(ierr); 2844bd041c0cSMatthew G. Knepley /* Get set of coarse cells that overlap points (would like to group points by coarse cell) */ 2845bd041c0cSMatthew G. Knepley ierr = DMLocatePoints(dmc, pointVec, DM_POINTLOCATION_NEAREST, &coarseCellSF);CHKERRQ(ierr); 2846bd041c0cSMatthew G. Knepley /* Update matrix */ 2847bd041c0cSMatthew G. Knepley ierr = PetscSFGetGraph(coarseCellSF, NULL, &numCoarseCells, NULL, &coarseCells);CHKERRQ(ierr); 2848bd041c0cSMatthew G. Knepley if (numCoarseCells != Nq) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Not all closure points located"); 2849bd041c0cSMatthew G. Knepley ierr = VecGetArray(pointVec, &pV);CHKERRQ(ierr); 2850bd041c0cSMatthew G. Knepley for (ccell = 0; ccell < numCoarseCells; ++ccell) { 2851bd041c0cSMatthew G. Knepley PetscReal pVReal[3]; 2852c330f8ffSToby Isaac const PetscReal xi0[3] = {-1., -1., -1.}; 2853c330f8ffSToby Isaac 2854bd041c0cSMatthew G. Knepley 2855bd041c0cSMatthew G. Knepley ierr = DMPlexGetClosureIndices(dmc, csection, globalCSection, coarseCells[ccell].index, &numCIndices, &cindices, NULL);CHKERRQ(ierr); 2856bd041c0cSMatthew G. Knepley /* Transform points from real space to coarse reference space */ 2857bd041c0cSMatthew G. Knepley ierr = DMPlexComputeCellGeometryFEM(dmc, coarseCells[ccell].index, NULL, v0c, Jc, invJc, &detJc);CHKERRQ(ierr); 2858bd041c0cSMatthew G. Knepley for (d = 0; d < dim; ++d) pVReal[d] = PetscRealPart(pV[ccell*dim+d]); 2859c330f8ffSToby Isaac CoordinatesRealToRef(dim, dim, xi0, v0c, invJc, pVReal, x); 2860bd041c0cSMatthew G. Knepley 2861bd041c0cSMatthew G. Knepley if (id == PETSCFE_CLASSID) { 2862bd041c0cSMatthew G. Knepley PetscFE fe = (PetscFE) obj; 2863bd041c0cSMatthew G. Knepley 2864bd041c0cSMatthew G. Knepley /* Evaluate coarse basis on contained point */ 2865bd041c0cSMatthew G. Knepley ierr = PetscFEGetDimension(fe, &cpdim);CHKERRQ(ierr); 2866ef0bb6c7SMatthew G. Knepley ierr = PetscFEComputeTabulation(fe, 1, x, 0, T);CHKERRQ(ierr); 2867bd041c0cSMatthew G. Knepley /* Get elemMat entries by multiplying by weight */ 2868bd041c0cSMatthew G. Knepley for (i = 0; i < numFIndices; ++i) { 2869580bdb30SBarry Smith ierr = PetscArrayzero(elemMat, cpdim);CHKERRQ(ierr); 2870bd041c0cSMatthew G. Knepley for (j = 0; j < cpdim; ++j) { 2871ef0bb6c7SMatthew G. Knepley for (c = 0; c < Nc; ++c) elemMat[j] += T->T[0][j*Nc + c]*Tfine->T[0][(ccell*numFIndices + i)*Nc + c]*qweights[ccell*Nc + c]*detJ; 2872bd041c0cSMatthew G. Knepley } 2873bd041c0cSMatthew G. Knepley /* Update interpolator */ 2874bd041c0cSMatthew G. Knepley if (mesh->printFEM > 1) {ierr = DMPrintCellMatrix(cell, name, 1, numCIndices, elemMat);CHKERRQ(ierr);} 2875bd041c0cSMatthew G. Knepley if (numCIndices != cpdim) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Number of element matrix columns %D != %D", numCIndices, cpdim); 2876bd041c0cSMatthew G. Knepley ierr = MatSetValues(mass, 1, &findices[i], numCIndices, cindices, elemMat, ADD_VALUES);CHKERRQ(ierr); 2877bd041c0cSMatthew G. Knepley } 2878bd041c0cSMatthew G. Knepley } else { 2879bd041c0cSMatthew G. Knepley cpdim = 1; 2880bd041c0cSMatthew G. Knepley for (i = 0; i < numFIndices; ++i) { 2881580bdb30SBarry Smith ierr = PetscArrayzero(elemMat, cpdim);CHKERRQ(ierr); 2882bd041c0cSMatthew G. Knepley for (j = 0; j < cpdim; ++j) { 2883bd041c0cSMatthew G. Knepley for (c = 0; c < Nc; ++c) elemMat[j] += 1.0*1.0*qweights[ccell*Nc + c]*detJ; 2884bd041c0cSMatthew G. Knepley } 2885bd041c0cSMatthew G. Knepley /* Update interpolator */ 2886bd041c0cSMatthew G. Knepley if (mesh->printFEM > 1) {ierr = DMPrintCellMatrix(cell, name, 1, numCIndices, elemMat);CHKERRQ(ierr);} 2887ff1e0c32SBarry Smith ierr = PetscPrintf(PETSC_COMM_SELF, "Nq: %D %D Nf: %D %D Nc: %D %D\n", ccell, Nq, i, numFIndices, j, numCIndices);CHKERRQ(ierr); 2888bd041c0cSMatthew G. Knepley if (numCIndices != cpdim) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Number of element matrix columns %D != %D", numCIndices, cpdim); 2889bd041c0cSMatthew G. Knepley ierr = MatSetValues(mass, 1, &findices[i], numCIndices, cindices, elemMat, ADD_VALUES);CHKERRQ(ierr); 2890bd041c0cSMatthew G. Knepley } 2891bd041c0cSMatthew G. Knepley } 2892bd041c0cSMatthew G. Knepley ierr = DMPlexRestoreClosureIndices(dmc, csection, globalCSection, coarseCells[ccell].index, &numCIndices, &cindices, NULL);CHKERRQ(ierr); 2893bd041c0cSMatthew G. Knepley } 2894bd041c0cSMatthew G. Knepley ierr = VecRestoreArray(pointVec, &pV);CHKERRQ(ierr); 2895bd041c0cSMatthew G. Knepley ierr = PetscSFDestroy(&coarseCellSF);CHKERRQ(ierr); 2896bd041c0cSMatthew G. Knepley ierr = VecDestroy(&pointVec);CHKERRQ(ierr); 2897bd041c0cSMatthew G. Knepley ierr = DMPlexRestoreClosureIndices(dmf, fsection, globalFSection, cell, &numFIndices, &findices, NULL);CHKERRQ(ierr); 2898bd041c0cSMatthew G. Knepley } 2899ef0bb6c7SMatthew G. Knepley if (id == PETSCFE_CLASSID) {ierr = PetscTabulationDestroy(&T);CHKERRQ(ierr);} 2900bd041c0cSMatthew G. Knepley } 2901bd041c0cSMatthew G. Knepley ierr = PetscFree3(v0,J,invJ);CHKERRQ(ierr); 2902bd041c0cSMatthew G. Knepley ierr = PetscFree3(v0c,Jc,invJc);CHKERRQ(ierr); 2903bd041c0cSMatthew G. Knepley ierr = PetscFree(elemMat);CHKERRQ(ierr); 2904bd041c0cSMatthew G. Knepley ierr = MatAssemblyBegin(mass, MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2905bd041c0cSMatthew G. Knepley ierr = MatAssemblyEnd(mass, MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2906bd041c0cSMatthew G. Knepley PetscFunctionReturn(0); 2907bd041c0cSMatthew G. Knepley } 2908bd041c0cSMatthew G. Knepley 2909bd041c0cSMatthew G. Knepley /*@ 291046fa42a0SMatthew G. Knepley DMPlexComputeInjectorFEM - Compute a mapping from coarse unknowns to fine unknowns 291146fa42a0SMatthew G. Knepley 291246fa42a0SMatthew G. Knepley Input Parameters: 291346fa42a0SMatthew G. Knepley + dmc - The coarse mesh 291446fa42a0SMatthew G. Knepley - dmf - The fine mesh 291546fa42a0SMatthew G. Knepley - user - The user context 291646fa42a0SMatthew G. Knepley 291746fa42a0SMatthew G. Knepley Output Parameter: 291846fa42a0SMatthew G. Knepley . sc - The mapping 291946fa42a0SMatthew G. Knepley 292046fa42a0SMatthew G. Knepley Level: developer 292146fa42a0SMatthew G. Knepley 292246fa42a0SMatthew G. Knepley .seealso: DMPlexComputeInterpolatorNested(), DMPlexComputeJacobianFEM() 292346fa42a0SMatthew G. Knepley @*/ 29247c927364SMatthew G. Knepley PetscErrorCode DMPlexComputeInjectorFEM(DM dmc, DM dmf, VecScatter *sc, void *user) 29257c927364SMatthew G. Knepley { 2926e9d4ef1bSMatthew G. Knepley PetscDS prob; 29277c927364SMatthew G. Knepley PetscFE *feRef; 292897c42addSMatthew G. Knepley PetscFV *fvRef; 29297c927364SMatthew G. Knepley Vec fv, cv; 29307c927364SMatthew G. Knepley IS fis, cis; 29317c927364SMatthew G. Knepley PetscSection fsection, fglobalSection, csection, cglobalSection; 29327c927364SMatthew G. Knepley PetscInt *cmap, *cellCIndices, *cellFIndices, *cindices, *findices; 2933485ad865SMatthew G. Knepley PetscInt cTotDim, fTotDim = 0, Nf, f, field, cStart, cEnd, c, dim, d, startC, endC, offsetC, offsetF, m; 29346f3d3cbcSMatthew G. Knepley PetscBool *needAvg; 29357c927364SMatthew G. Knepley PetscErrorCode ierr; 29367c927364SMatthew G. Knepley 29377c927364SMatthew G. Knepley PetscFunctionBegin; 293875a69067SMatthew G. Knepley ierr = PetscLogEventBegin(DMPLEX_InjectorFEM,dmc,dmf,0,0);CHKERRQ(ierr); 2939c73cfb54SMatthew G. Knepley ierr = DMGetDimension(dmf, &dim);CHKERRQ(ierr); 294092fd8e1eSJed Brown ierr = DMGetLocalSection(dmf, &fsection);CHKERRQ(ierr); 2941e87a4003SBarry Smith ierr = DMGetGlobalSection(dmf, &fglobalSection);CHKERRQ(ierr); 294292fd8e1eSJed Brown ierr = DMGetLocalSection(dmc, &csection);CHKERRQ(ierr); 2943e87a4003SBarry Smith ierr = DMGetGlobalSection(dmc, &cglobalSection);CHKERRQ(ierr); 29447c927364SMatthew G. Knepley ierr = PetscSectionGetNumFields(fsection, &Nf);CHKERRQ(ierr); 2945*412e9a14SMatthew G. Knepley ierr = DMPlexGetSimplexOrBoxCells(dmc, 0, &cStart, &cEnd);CHKERRQ(ierr); 2946e9d4ef1bSMatthew G. Knepley ierr = DMGetDS(dmc, &prob);CHKERRQ(ierr); 29476f3d3cbcSMatthew G. Knepley ierr = PetscCalloc3(Nf,&feRef,Nf,&fvRef,Nf,&needAvg);CHKERRQ(ierr); 29487c927364SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 294997c42addSMatthew G. Knepley PetscObject obj; 295097c42addSMatthew G. Knepley PetscClassId id; 2951aa7890ccSMatthew G. Knepley PetscInt fNb = 0, Nc = 0; 29527c927364SMatthew G. Knepley 295397c42addSMatthew G. Knepley ierr = PetscDSGetDiscretization(prob, f, &obj);CHKERRQ(ierr); 295497c42addSMatthew G. Knepley ierr = PetscObjectGetClassId(obj, &id);CHKERRQ(ierr); 295597c42addSMatthew G. Knepley if (id == PETSCFE_CLASSID) { 295697c42addSMatthew G. Knepley PetscFE fe = (PetscFE) obj; 29576f3d3cbcSMatthew G. Knepley PetscSpace sp; 29589b2fc754SMatthew G. Knepley PetscInt maxDegree; 295997c42addSMatthew G. Knepley 29607c927364SMatthew G. Knepley ierr = PetscFERefine(fe, &feRef[f]);CHKERRQ(ierr); 29617c927364SMatthew G. Knepley ierr = PetscFEGetDimension(feRef[f], &fNb);CHKERRQ(ierr); 29627c927364SMatthew G. Knepley ierr = PetscFEGetNumComponents(fe, &Nc);CHKERRQ(ierr); 29636f3d3cbcSMatthew G. Knepley ierr = PetscFEGetBasisSpace(fe, &sp);CHKERRQ(ierr); 29649b2fc754SMatthew G. Knepley ierr = PetscSpaceGetDegree(sp, NULL, &maxDegree);CHKERRQ(ierr); 29659b2fc754SMatthew G. Knepley if (!maxDegree) needAvg[f] = PETSC_TRUE; 296697c42addSMatthew G. Knepley } else if (id == PETSCFV_CLASSID) { 296797c42addSMatthew G. Knepley PetscFV fv = (PetscFV) obj; 296897c42addSMatthew G. Knepley PetscDualSpace Q; 296997c42addSMatthew G. Knepley 297097c42addSMatthew G. Knepley ierr = PetscFVRefine(fv, &fvRef[f]);CHKERRQ(ierr); 297197c42addSMatthew G. Knepley ierr = PetscFVGetDualSpace(fvRef[f], &Q);CHKERRQ(ierr); 297297c42addSMatthew G. Knepley ierr = PetscDualSpaceGetDimension(Q, &fNb);CHKERRQ(ierr); 297397c42addSMatthew G. Knepley ierr = PetscFVGetNumComponents(fv, &Nc);CHKERRQ(ierr); 29746f3d3cbcSMatthew G. Knepley needAvg[f] = PETSC_TRUE; 297597c42addSMatthew G. Knepley } 2976d172c84bSMatthew G. Knepley fTotDim += fNb; 29777c927364SMatthew G. Knepley } 2978e9d4ef1bSMatthew G. Knepley ierr = PetscDSGetTotalDimension(prob, &cTotDim);CHKERRQ(ierr); 29797c927364SMatthew G. Knepley ierr = PetscMalloc1(cTotDim,&cmap);CHKERRQ(ierr); 29807c927364SMatthew G. Knepley for (field = 0, offsetC = 0, offsetF = 0; field < Nf; ++field) { 29817c927364SMatthew G. Knepley PetscFE feC; 298297c42addSMatthew G. Knepley PetscFV fvC; 29837c927364SMatthew G. Knepley PetscDualSpace QF, QC; 2984d172c84bSMatthew G. Knepley PetscInt order = -1, NcF, NcC, fpdim, cpdim; 29857c927364SMatthew G. Knepley 298697c42addSMatthew G. Knepley if (feRef[field]) { 2987e9d4ef1bSMatthew G. Knepley ierr = PetscDSGetDiscretization(prob, field, (PetscObject *) &feC);CHKERRQ(ierr); 29887c927364SMatthew G. Knepley ierr = PetscFEGetNumComponents(feC, &NcC);CHKERRQ(ierr); 29897c927364SMatthew G. Knepley ierr = PetscFEGetNumComponents(feRef[field], &NcF);CHKERRQ(ierr); 29907c927364SMatthew G. Knepley ierr = PetscFEGetDualSpace(feRef[field], &QF);CHKERRQ(ierr); 2991d172c84bSMatthew G. Knepley ierr = PetscDualSpaceGetOrder(QF, &order);CHKERRQ(ierr); 29927c927364SMatthew G. Knepley ierr = PetscDualSpaceGetDimension(QF, &fpdim);CHKERRQ(ierr); 29937c927364SMatthew G. Knepley ierr = PetscFEGetDualSpace(feC, &QC);CHKERRQ(ierr); 29947c927364SMatthew G. Knepley ierr = PetscDualSpaceGetDimension(QC, &cpdim);CHKERRQ(ierr); 299597c42addSMatthew G. Knepley } else { 299697c42addSMatthew G. Knepley ierr = PetscDSGetDiscretization(prob, field, (PetscObject *) &fvC);CHKERRQ(ierr); 299797c42addSMatthew G. Knepley ierr = PetscFVGetNumComponents(fvC, &NcC);CHKERRQ(ierr); 299897c42addSMatthew G. Knepley ierr = PetscFVGetNumComponents(fvRef[field], &NcF);CHKERRQ(ierr); 299997c42addSMatthew G. Knepley ierr = PetscFVGetDualSpace(fvRef[field], &QF);CHKERRQ(ierr); 300097c42addSMatthew G. Knepley ierr = PetscDualSpaceGetDimension(QF, &fpdim);CHKERRQ(ierr); 300197c42addSMatthew G. Knepley ierr = PetscFVGetDualSpace(fvC, &QC);CHKERRQ(ierr); 300297c42addSMatthew G. Knepley ierr = PetscDualSpaceGetDimension(QC, &cpdim);CHKERRQ(ierr); 300397c42addSMatthew G. Knepley } 3004ff1e0c32SBarry Smith if (NcF != NcC) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of components in fine space field %D does not match coarse field %D", NcF, NcC); 30057c927364SMatthew G. Knepley for (c = 0; c < cpdim; ++c) { 30067c927364SMatthew G. Knepley PetscQuadrature cfunc; 3007d172c84bSMatthew G. Knepley const PetscReal *cqpoints, *cqweights; 3008d172c84bSMatthew G. Knepley PetscInt NqcC, NpC; 300997c42addSMatthew G. Knepley PetscBool found = PETSC_FALSE; 30107c927364SMatthew G. Knepley 30117c927364SMatthew G. Knepley ierr = PetscDualSpaceGetFunctional(QC, c, &cfunc);CHKERRQ(ierr); 3012d172c84bSMatthew G. Knepley ierr = PetscQuadratureGetData(cfunc, NULL, &NqcC, &NpC, &cqpoints, &cqweights);CHKERRQ(ierr); 3013ff1e0c32SBarry Smith if (NqcC != NcC) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of quadrature components %D must match number of field components %D", NqcC, NcC); 301497c42addSMatthew G. Knepley if (NpC != 1 && feRef[field]) SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Do not know how to do injection for moments"); 30157c927364SMatthew G. Knepley for (f = 0; f < fpdim; ++f) { 30167c927364SMatthew G. Knepley PetscQuadrature ffunc; 3017d172c84bSMatthew G. Knepley const PetscReal *fqpoints, *fqweights; 30187c927364SMatthew G. Knepley PetscReal sum = 0.0; 3019d172c84bSMatthew G. Knepley PetscInt NqcF, NpF; 30207c927364SMatthew G. Knepley 30217c927364SMatthew G. Knepley ierr = PetscDualSpaceGetFunctional(QF, f, &ffunc);CHKERRQ(ierr); 3022d172c84bSMatthew G. Knepley ierr = PetscQuadratureGetData(ffunc, NULL, &NqcF, &NpF, &fqpoints, &fqweights);CHKERRQ(ierr); 3023ff1e0c32SBarry Smith if (NqcF != NcF) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of quadrature components %D must match number of field components %D", NqcF, NcF); 30247c927364SMatthew G. Knepley if (NpC != NpF) continue; 30257c927364SMatthew G. Knepley for (d = 0; d < dim; ++d) sum += PetscAbsReal(cqpoints[d] - fqpoints[d]); 30267c927364SMatthew G. Knepley if (sum > 1.0e-9) continue; 3027d172c84bSMatthew G. Knepley for (d = 0; d < NcC; ++d) sum += PetscAbsReal(cqweights[d]*fqweights[d]); 3028d172c84bSMatthew G. Knepley if (sum < 1.0e-9) continue; 3029d172c84bSMatthew G. Knepley cmap[offsetC+c] = offsetF+f; 303097c42addSMatthew G. Knepley found = PETSC_TRUE; 30317c927364SMatthew G. Knepley break; 30327c927364SMatthew G. Knepley } 303397c42addSMatthew G. Knepley if (!found) { 303497c42addSMatthew G. Knepley /* TODO We really want the average here, but some asshole put VecScatter in the interface */ 3035d172c84bSMatthew G. Knepley if (fvRef[field] || (feRef[field] && order == 0)) { 3036d172c84bSMatthew G. Knepley cmap[offsetC+c] = offsetF+0; 303797c42addSMatthew G. Knepley } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Could not locate matching functional for injection"); 303897c42addSMatthew G. Knepley } 30397c927364SMatthew G. Knepley } 3040d172c84bSMatthew G. Knepley offsetC += cpdim; 3041d172c84bSMatthew G. Knepley offsetF += fpdim; 30427c927364SMatthew G. Knepley } 304397c42addSMatthew G. Knepley for (f = 0; f < Nf; ++f) {ierr = PetscFEDestroy(&feRef[f]);CHKERRQ(ierr);ierr = PetscFVDestroy(&fvRef[f]);CHKERRQ(ierr);} 30446f3d3cbcSMatthew G. Knepley ierr = PetscFree3(feRef,fvRef,needAvg);CHKERRQ(ierr); 30457c927364SMatthew G. Knepley 30467c927364SMatthew G. Knepley ierr = DMGetGlobalVector(dmf, &fv);CHKERRQ(ierr); 30477c927364SMatthew G. Knepley ierr = DMGetGlobalVector(dmc, &cv);CHKERRQ(ierr); 30480bd915a7SMatthew G. Knepley ierr = VecGetOwnershipRange(cv, &startC, &endC);CHKERRQ(ierr); 30497c927364SMatthew G. Knepley ierr = PetscSectionGetConstrainedStorageSize(cglobalSection, &m);CHKERRQ(ierr); 30507c927364SMatthew G. Knepley ierr = PetscMalloc2(cTotDim,&cellCIndices,fTotDim,&cellFIndices);CHKERRQ(ierr); 3051aa7da3c4SMatthew G. Knepley ierr = PetscMalloc1(m,&cindices);CHKERRQ(ierr); 3052aa7da3c4SMatthew G. Knepley ierr = PetscMalloc1(m,&findices);CHKERRQ(ierr); 30537c927364SMatthew G. Knepley for (d = 0; d < m; ++d) cindices[d] = findices[d] = -1; 30547c927364SMatthew G. Knepley for (c = cStart; c < cEnd; ++c) { 30557c927364SMatthew G. Knepley ierr = DMPlexMatGetClosureIndicesRefined(dmf, fsection, fglobalSection, dmc, csection, cglobalSection, c, cellCIndices, cellFIndices);CHKERRQ(ierr); 30567c927364SMatthew G. Knepley for (d = 0; d < cTotDim; ++d) { 30570bd915a7SMatthew G. Knepley if ((cellCIndices[d] < startC) || (cellCIndices[d] >= endC)) continue; 3058ff1e0c32SBarry Smith if ((findices[cellCIndices[d]-startC] >= 0) && (findices[cellCIndices[d]-startC] != cellFIndices[cmap[d]])) SETERRQ3(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Coarse dof %D maps to both %D and %D", cindices[cellCIndices[d]-startC], findices[cellCIndices[d]-startC], cellFIndices[cmap[d]]); 30597c927364SMatthew G. Knepley cindices[cellCIndices[d]-startC] = cellCIndices[d]; 30607c927364SMatthew G. Knepley findices[cellCIndices[d]-startC] = cellFIndices[cmap[d]]; 30617c927364SMatthew G. Knepley } 30627c927364SMatthew G. Knepley } 30637c927364SMatthew G. Knepley ierr = PetscFree(cmap);CHKERRQ(ierr); 30647c927364SMatthew G. Knepley ierr = PetscFree2(cellCIndices,cellFIndices);CHKERRQ(ierr); 30657c927364SMatthew G. Knepley 30667c927364SMatthew G. Knepley ierr = ISCreateGeneral(PETSC_COMM_SELF, m, cindices, PETSC_OWN_POINTER, &cis);CHKERRQ(ierr); 30677c927364SMatthew G. Knepley ierr = ISCreateGeneral(PETSC_COMM_SELF, m, findices, PETSC_OWN_POINTER, &fis);CHKERRQ(ierr); 30689448b7f1SJunchao Zhang ierr = VecScatterCreate(cv, cis, fv, fis, sc);CHKERRQ(ierr); 30697c927364SMatthew G. Knepley ierr = ISDestroy(&cis);CHKERRQ(ierr); 30707c927364SMatthew G. Knepley ierr = ISDestroy(&fis);CHKERRQ(ierr); 30717c927364SMatthew G. Knepley ierr = DMRestoreGlobalVector(dmf, &fv);CHKERRQ(ierr); 30727c927364SMatthew G. Knepley ierr = DMRestoreGlobalVector(dmc, &cv);CHKERRQ(ierr); 307375a69067SMatthew G. Knepley ierr = PetscLogEventEnd(DMPLEX_InjectorFEM,dmc,dmf,0,0);CHKERRQ(ierr); 3074cb1e1211SMatthew G Knepley PetscFunctionReturn(0); 3075cb1e1211SMatthew G Knepley } 3076a1cf66bbSMatthew G. Knepley 30772f856554SMatthew G. Knepley /*@C 30782f856554SMatthew G. Knepley DMPlexGetCellFields - Retrieve the field values values for a chunk of cells 30792f856554SMatthew G. Knepley 30802f856554SMatthew G. Knepley Input Parameters: 30812f856554SMatthew G. Knepley + dm - The DM 30822f856554SMatthew G. Knepley . cellIS - The cells to include 30832f856554SMatthew G. Knepley . locX - A local vector with the solution fields 30842f856554SMatthew G. Knepley . locX_t - A local vector with solution field time derivatives, or NULL 30852f856554SMatthew G. Knepley - locA - A local vector with auxiliary fields, or NULL 30862f856554SMatthew G. Knepley 30872f856554SMatthew G. Knepley Output Parameters: 30882f856554SMatthew G. Knepley + u - The field coefficients 30892f856554SMatthew G. Knepley . u_t - The fields derivative coefficients 30902f856554SMatthew G. Knepley - a - The auxiliary field coefficients 30912f856554SMatthew G. Knepley 30922f856554SMatthew G. Knepley Level: developer 30932f856554SMatthew G. Knepley 30942f856554SMatthew G. Knepley .seealso: DMPlexGetFaceFields() 30952f856554SMatthew G. Knepley @*/ 30962f856554SMatthew G. Knepley PetscErrorCode DMPlexGetCellFields(DM dm, IS cellIS, Vec locX, Vec locX_t, Vec locA, PetscScalar **u, PetscScalar **u_t, PetscScalar **a) 30972f856554SMatthew G. Knepley { 30982f856554SMatthew G. Knepley DM plex, plexA = NULL; 3099a6e0b375SMatthew G. Knepley DMEnclosureType encAux; 31002f856554SMatthew G. Knepley PetscSection section, sectionAux; 31012f856554SMatthew G. Knepley PetscDS prob; 31022f856554SMatthew G. Knepley const PetscInt *cells; 31032f856554SMatthew G. Knepley PetscInt cStart, cEnd, numCells, totDim, totDimAux, c; 31042f856554SMatthew G. Knepley PetscErrorCode ierr; 31052f856554SMatthew G. Knepley 31062f856554SMatthew G. Knepley PetscFunctionBegin; 31072f856554SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 31082f856554SMatthew G. Knepley PetscValidHeaderSpecific(locX, VEC_CLASSID, 4); 31092f856554SMatthew G. Knepley if (locX_t) {PetscValidHeaderSpecific(locX_t, VEC_CLASSID, 5);} 31102f856554SMatthew G. Knepley if (locA) {PetscValidHeaderSpecific(locA, VEC_CLASSID, 6);} 31112f856554SMatthew G. Knepley PetscValidPointer(u, 7); 31122f856554SMatthew G. Knepley PetscValidPointer(u_t, 8); 31132f856554SMatthew G. Knepley PetscValidPointer(a, 9); 31142f856554SMatthew G. Knepley ierr = DMPlexConvertPlex(dm, &plex, PETSC_FALSE);CHKERRQ(ierr); 31152f856554SMatthew G. Knepley ierr = ISGetPointRange(cellIS, &cStart, &cEnd, &cells);CHKERRQ(ierr); 311692fd8e1eSJed Brown ierr = DMGetLocalSection(dm, §ion);CHKERRQ(ierr); 31172f856554SMatthew G. Knepley ierr = DMGetCellDS(dm, cStart, &prob);CHKERRQ(ierr); 31182f856554SMatthew G. Knepley ierr = PetscDSGetTotalDimension(prob, &totDim);CHKERRQ(ierr); 31192f856554SMatthew G. Knepley if (locA) { 31202f856554SMatthew G. Knepley DM dmAux; 31212f856554SMatthew G. Knepley PetscDS probAux; 31222f856554SMatthew G. Knepley 31232f856554SMatthew G. Knepley ierr = VecGetDM(locA, &dmAux);CHKERRQ(ierr); 3124a6e0b375SMatthew G. Knepley ierr = DMGetEnclosureRelation(dmAux, dm, &encAux);CHKERRQ(ierr); 31252f856554SMatthew G. Knepley ierr = DMPlexConvertPlex(dmAux, &plexA, PETSC_FALSE);CHKERRQ(ierr); 312692fd8e1eSJed Brown ierr = DMGetLocalSection(dmAux, §ionAux);CHKERRQ(ierr); 31272f856554SMatthew G. Knepley ierr = DMGetDS(dmAux, &probAux);CHKERRQ(ierr); 31282f856554SMatthew G. Knepley ierr = PetscDSGetTotalDimension(probAux, &totDimAux);CHKERRQ(ierr); 31292f856554SMatthew G. Knepley } 31302f856554SMatthew G. Knepley numCells = cEnd - cStart; 31312f856554SMatthew G. Knepley ierr = DMGetWorkArray(dm, numCells*totDim, MPIU_SCALAR, u);CHKERRQ(ierr); 31322f856554SMatthew G. Knepley if (locX_t) {ierr = DMGetWorkArray(dm, numCells*totDim, MPIU_SCALAR, u_t);CHKERRQ(ierr);} else {*u_t = NULL;} 31332f856554SMatthew G. Knepley if (locA) {ierr = DMGetWorkArray(dm, numCells*totDimAux, MPIU_SCALAR, a);CHKERRQ(ierr);} else {*a = NULL;} 31342f856554SMatthew G. Knepley for (c = cStart; c < cEnd; ++c) { 31352f856554SMatthew G. Knepley const PetscInt cell = cells ? cells[c] : c; 31362f856554SMatthew G. Knepley const PetscInt cind = c - cStart; 31372f856554SMatthew G. Knepley PetscScalar *x = NULL, *x_t = NULL, *ul = *u, *ul_t = *u_t, *al = *a; 31382f856554SMatthew G. Knepley PetscInt i; 31392f856554SMatthew G. Knepley 31402f856554SMatthew G. Knepley ierr = DMPlexVecGetClosure(plex, section, locX, cell, NULL, &x);CHKERRQ(ierr); 31412f856554SMatthew G. Knepley for (i = 0; i < totDim; ++i) ul[cind*totDim+i] = x[i]; 31422f856554SMatthew G. Knepley ierr = DMPlexVecRestoreClosure(plex, section, locX, cell, NULL, &x);CHKERRQ(ierr); 31432f856554SMatthew G. Knepley if (locX_t) { 31442f856554SMatthew G. Knepley ierr = DMPlexVecGetClosure(plex, section, locX_t, cell, NULL, &x_t);CHKERRQ(ierr); 31452f856554SMatthew G. Knepley for (i = 0; i < totDim; ++i) ul_t[cind*totDim+i] = x_t[i]; 31462f856554SMatthew G. Knepley ierr = DMPlexVecRestoreClosure(plex, section, locX_t, cell, NULL, &x_t);CHKERRQ(ierr); 31472f856554SMatthew G. Knepley } 31482f856554SMatthew G. Knepley if (locA) { 31492f856554SMatthew G. Knepley PetscInt subcell; 3150a6e0b375SMatthew G. Knepley ierr = DMGetEnclosurePoint(plexA, dm, encAux, cell, &subcell);CHKERRQ(ierr); 31512f856554SMatthew G. Knepley ierr = DMPlexVecGetClosure(plexA, sectionAux, locA, subcell, NULL, &x);CHKERRQ(ierr); 31522f856554SMatthew G. Knepley for (i = 0; i < totDimAux; ++i) al[cind*totDimAux+i] = x[i]; 31532f856554SMatthew G. Knepley ierr = DMPlexVecRestoreClosure(plexA, sectionAux, locA, subcell, NULL, &x);CHKERRQ(ierr); 31542f856554SMatthew G. Knepley } 31552f856554SMatthew G. Knepley } 31562f856554SMatthew G. Knepley ierr = DMDestroy(&plex);CHKERRQ(ierr); 31572f856554SMatthew G. Knepley if (locA) {ierr = DMDestroy(&plexA);CHKERRQ(ierr);} 31582f856554SMatthew G. Knepley ierr = ISRestorePointRange(cellIS, &cStart, &cEnd, &cells);CHKERRQ(ierr); 31592f856554SMatthew G. Knepley PetscFunctionReturn(0); 31602f856554SMatthew G. Knepley } 31612f856554SMatthew G. Knepley 31622f856554SMatthew G. Knepley /*@C 31632f856554SMatthew G. Knepley DMPlexRestoreCellFields - Restore the field values values for a chunk of cells 31642f856554SMatthew G. Knepley 31652f856554SMatthew G. Knepley Input Parameters: 31662f856554SMatthew G. Knepley + dm - The DM 31672f856554SMatthew G. Knepley . cellIS - The cells to include 31682f856554SMatthew G. Knepley . locX - A local vector with the solution fields 31692f856554SMatthew G. Knepley . locX_t - A local vector with solution field time derivatives, or NULL 31702f856554SMatthew G. Knepley - locA - A local vector with auxiliary fields, or NULL 31712f856554SMatthew G. Knepley 31722f856554SMatthew G. Knepley Output Parameters: 31732f856554SMatthew G. Knepley + u - The field coefficients 31742f856554SMatthew G. Knepley . u_t - The fields derivative coefficients 31752f856554SMatthew G. Knepley - a - The auxiliary field coefficients 31762f856554SMatthew G. Knepley 31772f856554SMatthew G. Knepley Level: developer 31782f856554SMatthew G. Knepley 31792f856554SMatthew G. Knepley .seealso: DMPlexGetFaceFields() 31802f856554SMatthew G. Knepley @*/ 31812f856554SMatthew G. Knepley PetscErrorCode DMPlexRestoreCellFields(DM dm, IS cellIS, Vec locX, Vec locX_t, Vec locA, PetscScalar **u, PetscScalar **u_t, PetscScalar **a) 31822f856554SMatthew G. Knepley { 31832f856554SMatthew G. Knepley PetscErrorCode ierr; 31842f856554SMatthew G. Knepley 31852f856554SMatthew G. Knepley PetscFunctionBegin; 31862f856554SMatthew G. Knepley ierr = DMRestoreWorkArray(dm, 0, MPIU_SCALAR, u);CHKERRQ(ierr); 31872f856554SMatthew G. Knepley if (locX_t) {ierr = DMRestoreWorkArray(dm, 0, MPIU_SCALAR, u_t);CHKERRQ(ierr);} 31882f856554SMatthew G. Knepley if (locA) {ierr = DMRestoreWorkArray(dm, 0, MPIU_SCALAR, a);CHKERRQ(ierr);} 31892f856554SMatthew G. Knepley PetscFunctionReturn(0); 31902f856554SMatthew G. Knepley } 31912f856554SMatthew G. Knepley 31922f856554SMatthew G. Knepley /*@C 31932f856554SMatthew G. Knepley DMPlexGetFaceFields - Retrieve the field values values for a chunk of faces 31942f856554SMatthew G. Knepley 31952f856554SMatthew G. Knepley Input Parameters: 31962f856554SMatthew G. Knepley + dm - The DM 31972f856554SMatthew G. Knepley . fStart - The first face to include 31982f856554SMatthew G. Knepley . fEnd - The first face to exclude 31992f856554SMatthew G. Knepley . locX - A local vector with the solution fields 32002f856554SMatthew G. Knepley . locX_t - A local vector with solution field time derivatives, or NULL 32012f856554SMatthew G. Knepley . faceGeometry - A local vector with face geometry 32022f856554SMatthew G. Knepley . cellGeometry - A local vector with cell geometry 32032f856554SMatthew G. Knepley - locaGrad - A local vector with field gradients, or NULL 32042f856554SMatthew G. Knepley 32052f856554SMatthew G. Knepley Output Parameters: 32062f856554SMatthew G. Knepley + Nface - The number of faces with field values 32072f856554SMatthew G. Knepley . uL - The field values at the left side of the face 32082f856554SMatthew G. Knepley - uR - The field values at the right side of the face 32092f856554SMatthew G. Knepley 32102f856554SMatthew G. Knepley Level: developer 32112f856554SMatthew G. Knepley 32122f856554SMatthew G. Knepley .seealso: DMPlexGetCellFields() 32132f856554SMatthew G. Knepley @*/ 32142f856554SMatthew G. Knepley PetscErrorCode DMPlexGetFaceFields(DM dm, PetscInt fStart, PetscInt fEnd, Vec locX, Vec locX_t, Vec faceGeometry, Vec cellGeometry, Vec locGrad, PetscInt *Nface, PetscScalar **uL, PetscScalar **uR) 32152f856554SMatthew G. Knepley { 32162f856554SMatthew G. Knepley DM dmFace, dmCell, dmGrad = NULL; 32172f856554SMatthew G. Knepley PetscSection section; 32182f856554SMatthew G. Knepley PetscDS prob; 32192f856554SMatthew G. Knepley DMLabel ghostLabel; 32202f856554SMatthew G. Knepley const PetscScalar *facegeom, *cellgeom, *x, *lgrad; 32212f856554SMatthew G. Knepley PetscBool *isFE; 32222f856554SMatthew G. Knepley PetscInt dim, Nf, f, Nc, numFaces = fEnd - fStart, iface, face; 32232f856554SMatthew G. Knepley PetscErrorCode ierr; 32242f856554SMatthew G. Knepley 32252f856554SMatthew G. Knepley PetscFunctionBegin; 32262f856554SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 32272f856554SMatthew G. Knepley PetscValidHeaderSpecific(locX, VEC_CLASSID, 4); 32282f856554SMatthew G. Knepley if (locX_t) {PetscValidHeaderSpecific(locX_t, VEC_CLASSID, 5);} 32292f856554SMatthew G. Knepley PetscValidHeaderSpecific(faceGeometry, VEC_CLASSID, 6); 32302f856554SMatthew G. Knepley PetscValidHeaderSpecific(cellGeometry, VEC_CLASSID, 7); 32312f856554SMatthew G. Knepley if (locGrad) {PetscValidHeaderSpecific(locGrad, VEC_CLASSID, 8);} 32322f856554SMatthew G. Knepley PetscValidPointer(uL, 9); 32332f856554SMatthew G. Knepley PetscValidPointer(uR, 10); 32342f856554SMatthew G. Knepley ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr); 32352f856554SMatthew G. Knepley ierr = DMGetDS(dm, &prob);CHKERRQ(ierr); 323692fd8e1eSJed Brown ierr = DMGetLocalSection(dm, §ion);CHKERRQ(ierr); 32372f856554SMatthew G. Knepley ierr = PetscDSGetNumFields(prob, &Nf);CHKERRQ(ierr); 32382f856554SMatthew G. Knepley ierr = PetscDSGetTotalComponents(prob, &Nc);CHKERRQ(ierr); 32392f856554SMatthew G. Knepley ierr = PetscMalloc1(Nf, &isFE);CHKERRQ(ierr); 32402f856554SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 32412f856554SMatthew G. Knepley PetscObject obj; 32422f856554SMatthew G. Knepley PetscClassId id; 32432f856554SMatthew G. Knepley 32442f856554SMatthew G. Knepley ierr = PetscDSGetDiscretization(prob, f, &obj);CHKERRQ(ierr); 32452f856554SMatthew G. Knepley ierr = PetscObjectGetClassId(obj, &id);CHKERRQ(ierr); 32462f856554SMatthew G. Knepley if (id == PETSCFE_CLASSID) {isFE[f] = PETSC_TRUE;} 32472f856554SMatthew G. Knepley else if (id == PETSCFV_CLASSID) {isFE[f] = PETSC_FALSE;} 32482f856554SMatthew G. Knepley else {isFE[f] = PETSC_FALSE;} 32492f856554SMatthew G. Knepley } 32502f856554SMatthew G. Knepley ierr = DMGetLabel(dm, "ghost", &ghostLabel);CHKERRQ(ierr); 32512f856554SMatthew G. Knepley ierr = VecGetArrayRead(locX, &x);CHKERRQ(ierr); 32522f856554SMatthew G. Knepley ierr = VecGetDM(faceGeometry, &dmFace);CHKERRQ(ierr); 32532f856554SMatthew G. Knepley ierr = VecGetArrayRead(faceGeometry, &facegeom);CHKERRQ(ierr); 32542f856554SMatthew G. Knepley ierr = VecGetDM(cellGeometry, &dmCell);CHKERRQ(ierr); 32552f856554SMatthew G. Knepley ierr = VecGetArrayRead(cellGeometry, &cellgeom);CHKERRQ(ierr); 32562f856554SMatthew G. Knepley if (locGrad) { 32572f856554SMatthew G. Knepley ierr = VecGetDM(locGrad, &dmGrad);CHKERRQ(ierr); 32582f856554SMatthew G. Knepley ierr = VecGetArrayRead(locGrad, &lgrad);CHKERRQ(ierr); 32592f856554SMatthew G. Knepley } 32602f856554SMatthew G. Knepley ierr = DMGetWorkArray(dm, numFaces*Nc, MPIU_SCALAR, uL);CHKERRQ(ierr); 32612f856554SMatthew G. Knepley ierr = DMGetWorkArray(dm, numFaces*Nc, MPIU_SCALAR, uR);CHKERRQ(ierr); 32622f856554SMatthew G. Knepley /* Right now just eat the extra work for FE (could make a cell loop) */ 32632f856554SMatthew G. Knepley for (face = fStart, iface = 0; face < fEnd; ++face) { 32642f856554SMatthew G. Knepley const PetscInt *cells; 32652f856554SMatthew G. Knepley PetscFVFaceGeom *fg; 32662f856554SMatthew G. Knepley PetscFVCellGeom *cgL, *cgR; 32672f856554SMatthew G. Knepley PetscScalar *xL, *xR, *gL, *gR; 32682f856554SMatthew G. Knepley PetscScalar *uLl = *uL, *uRl = *uR; 32692f856554SMatthew G. Knepley PetscInt ghost, nsupp, nchild; 32702f856554SMatthew G. Knepley 32712f856554SMatthew G. Knepley ierr = DMLabelGetValue(ghostLabel, face, &ghost);CHKERRQ(ierr); 32722f856554SMatthew G. Knepley ierr = DMPlexGetSupportSize(dm, face, &nsupp);CHKERRQ(ierr); 32732f856554SMatthew G. Knepley ierr = DMPlexGetTreeChildren(dm, face, &nchild, NULL);CHKERRQ(ierr); 32742f856554SMatthew G. Knepley if (ghost >= 0 || nsupp > 2 || nchild > 0) continue; 32752f856554SMatthew G. Knepley ierr = DMPlexPointLocalRead(dmFace, face, facegeom, &fg);CHKERRQ(ierr); 32762f856554SMatthew G. Knepley ierr = DMPlexGetSupport(dm, face, &cells);CHKERRQ(ierr); 32772f856554SMatthew G. Knepley ierr = DMPlexPointLocalRead(dmCell, cells[0], cellgeom, &cgL);CHKERRQ(ierr); 32782f856554SMatthew G. Knepley ierr = DMPlexPointLocalRead(dmCell, cells[1], cellgeom, &cgR);CHKERRQ(ierr); 32792f856554SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 32802f856554SMatthew G. Knepley PetscInt off; 32812f856554SMatthew G. Knepley 32822f856554SMatthew G. Knepley ierr = PetscDSGetComponentOffset(prob, f, &off);CHKERRQ(ierr); 32832f856554SMatthew G. Knepley if (isFE[f]) { 32842f856554SMatthew G. Knepley const PetscInt *cone; 32852f856554SMatthew G. Knepley PetscInt comp, coneSizeL, coneSizeR, faceLocL, faceLocR, ldof, rdof, d; 32862f856554SMatthew G. Knepley 32872f856554SMatthew G. Knepley xL = xR = NULL; 32882f856554SMatthew G. Knepley ierr = PetscSectionGetFieldComponents(section, f, &comp);CHKERRQ(ierr); 32892f856554SMatthew G. Knepley ierr = DMPlexVecGetClosure(dm, section, locX, cells[0], &ldof, (PetscScalar **) &xL);CHKERRQ(ierr); 32902f856554SMatthew G. Knepley ierr = DMPlexVecGetClosure(dm, section, locX, cells[1], &rdof, (PetscScalar **) &xR);CHKERRQ(ierr); 32912f856554SMatthew G. Knepley ierr = DMPlexGetCone(dm, cells[0], &cone);CHKERRQ(ierr); 32922f856554SMatthew G. Knepley ierr = DMPlexGetConeSize(dm, cells[0], &coneSizeL);CHKERRQ(ierr); 32932f856554SMatthew G. Knepley for (faceLocL = 0; faceLocL < coneSizeL; ++faceLocL) if (cone[faceLocL] == face) break; 32942f856554SMatthew G. Knepley ierr = DMPlexGetCone(dm, cells[1], &cone);CHKERRQ(ierr); 32952f856554SMatthew G. Knepley ierr = DMPlexGetConeSize(dm, cells[1], &coneSizeR);CHKERRQ(ierr); 32962f856554SMatthew G. Knepley for (faceLocR = 0; faceLocR < coneSizeR; ++faceLocR) if (cone[faceLocR] == face) break; 3297ff1e0c32SBarry Smith if (faceLocL == coneSizeL && faceLocR == coneSizeR) SETERRQ3(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Could not find face %D in cone of cell %D or cell %D", face, cells[0], cells[1]); 32982f856554SMatthew G. Knepley /* Check that FEM field has values in the right cell (sometimes its an FV ghost cell) */ 32992f856554SMatthew G. Knepley /* TODO: this is a hack that might not be right for nonconforming */ 33002f856554SMatthew G. Knepley if (faceLocL < coneSizeL) { 3301a8f1f9e5SMatthew G. Knepley ierr = PetscFEEvaluateFaceFields_Internal(prob, f, faceLocL, xL, &uLl[iface*Nc+off]);CHKERRQ(ierr); 3302a8f1f9e5SMatthew G. Knepley if (rdof == ldof && faceLocR < coneSizeR) {ierr = PetscFEEvaluateFaceFields_Internal(prob, f, faceLocR, xR, &uRl[iface*Nc+off]);CHKERRQ(ierr);} 33032f856554SMatthew G. Knepley else {for(d = 0; d < comp; ++d) uRl[iface*Nc+off+d] = uLl[iface*Nc+off+d];} 33042f856554SMatthew G. Knepley } 33052f856554SMatthew G. Knepley else { 3306a8f1f9e5SMatthew G. Knepley ierr = PetscFEEvaluateFaceFields_Internal(prob, f, faceLocR, xR, &uRl[iface*Nc+off]);CHKERRQ(ierr); 33072f856554SMatthew G. Knepley ierr = PetscSectionGetFieldComponents(section, f, &comp);CHKERRQ(ierr); 33082f856554SMatthew G. Knepley for(d = 0; d < comp; ++d) uLl[iface*Nc+off+d] = uRl[iface*Nc+off+d]; 33092f856554SMatthew G. Knepley } 33102f856554SMatthew G. Knepley ierr = DMPlexVecRestoreClosure(dm, section, locX, cells[0], &ldof, (PetscScalar **) &xL);CHKERRQ(ierr); 33112f856554SMatthew G. Knepley ierr = DMPlexVecRestoreClosure(dm, section, locX, cells[1], &rdof, (PetscScalar **) &xR);CHKERRQ(ierr); 33122f856554SMatthew G. Knepley } else { 33132f856554SMatthew G. Knepley PetscFV fv; 33142f856554SMatthew G. Knepley PetscInt numComp, c; 33152f856554SMatthew G. Knepley 33162f856554SMatthew G. Knepley ierr = PetscDSGetDiscretization(prob, f, (PetscObject *) &fv);CHKERRQ(ierr); 33172f856554SMatthew G. Knepley ierr = PetscFVGetNumComponents(fv, &numComp);CHKERRQ(ierr); 33182f856554SMatthew G. Knepley ierr = DMPlexPointLocalFieldRead(dm, cells[0], f, x, &xL);CHKERRQ(ierr); 33192f856554SMatthew G. Knepley ierr = DMPlexPointLocalFieldRead(dm, cells[1], f, x, &xR);CHKERRQ(ierr); 33202f856554SMatthew G. Knepley if (dmGrad) { 33212f856554SMatthew G. Knepley PetscReal dxL[3], dxR[3]; 33222f856554SMatthew G. Knepley 33232f856554SMatthew G. Knepley ierr = DMPlexPointLocalRead(dmGrad, cells[0], lgrad, &gL);CHKERRQ(ierr); 33242f856554SMatthew G. Knepley ierr = DMPlexPointLocalRead(dmGrad, cells[1], lgrad, &gR);CHKERRQ(ierr); 33252f856554SMatthew G. Knepley DMPlex_WaxpyD_Internal(dim, -1, cgL->centroid, fg->centroid, dxL); 33262f856554SMatthew G. Knepley DMPlex_WaxpyD_Internal(dim, -1, cgR->centroid, fg->centroid, dxR); 33272f856554SMatthew G. Knepley for (c = 0; c < numComp; ++c) { 33282f856554SMatthew G. Knepley uLl[iface*Nc+off+c] = xL[c] + DMPlex_DotD_Internal(dim, &gL[c*dim], dxL); 33292f856554SMatthew G. Knepley uRl[iface*Nc+off+c] = xR[c] + DMPlex_DotD_Internal(dim, &gR[c*dim], dxR); 33302f856554SMatthew G. Knepley } 33312f856554SMatthew G. Knepley } else { 33322f856554SMatthew G. Knepley for (c = 0; c < numComp; ++c) { 33332f856554SMatthew G. Knepley uLl[iface*Nc+off+c] = xL[c]; 33342f856554SMatthew G. Knepley uRl[iface*Nc+off+c] = xR[c]; 33352f856554SMatthew G. Knepley } 33362f856554SMatthew G. Knepley } 33372f856554SMatthew G. Knepley } 33382f856554SMatthew G. Knepley } 33392f856554SMatthew G. Knepley ++iface; 33402f856554SMatthew G. Knepley } 33412f856554SMatthew G. Knepley *Nface = iface; 33422f856554SMatthew G. Knepley ierr = VecRestoreArrayRead(locX, &x);CHKERRQ(ierr); 33432f856554SMatthew G. Knepley ierr = VecRestoreArrayRead(faceGeometry, &facegeom);CHKERRQ(ierr); 33442f856554SMatthew G. Knepley ierr = VecRestoreArrayRead(cellGeometry, &cellgeom);CHKERRQ(ierr); 33452f856554SMatthew G. Knepley if (locGrad) { 33462f856554SMatthew G. Knepley ierr = VecRestoreArrayRead(locGrad, &lgrad);CHKERRQ(ierr); 33472f856554SMatthew G. Knepley } 33482f856554SMatthew G. Knepley ierr = PetscFree(isFE);CHKERRQ(ierr); 33492f856554SMatthew G. Knepley PetscFunctionReturn(0); 33502f856554SMatthew G. Knepley } 33512f856554SMatthew G. Knepley 33522f856554SMatthew G. Knepley /*@C 33532f856554SMatthew G. Knepley DMPlexRestoreFaceFields - Restore the field values values for a chunk of faces 33542f856554SMatthew G. Knepley 33552f856554SMatthew G. Knepley Input Parameters: 33562f856554SMatthew G. Knepley + dm - The DM 33572f856554SMatthew G. Knepley . fStart - The first face to include 33582f856554SMatthew G. Knepley . fEnd - The first face to exclude 33592f856554SMatthew G. Knepley . locX - A local vector with the solution fields 33602f856554SMatthew G. Knepley . locX_t - A local vector with solution field time derivatives, or NULL 33612f856554SMatthew G. Knepley . faceGeometry - A local vector with face geometry 33622f856554SMatthew G. Knepley . cellGeometry - A local vector with cell geometry 33632f856554SMatthew G. Knepley - locaGrad - A local vector with field gradients, or NULL 33642f856554SMatthew G. Knepley 33652f856554SMatthew G. Knepley Output Parameters: 33662f856554SMatthew G. Knepley + Nface - The number of faces with field values 33672f856554SMatthew G. Knepley . uL - The field values at the left side of the face 33682f856554SMatthew G. Knepley - uR - The field values at the right side of the face 33692f856554SMatthew G. Knepley 33702f856554SMatthew G. Knepley Level: developer 33712f856554SMatthew G. Knepley 33722f856554SMatthew G. Knepley .seealso: DMPlexGetFaceFields() 33732f856554SMatthew G. Knepley @*/ 33742f856554SMatthew G. Knepley PetscErrorCode DMPlexRestoreFaceFields(DM dm, PetscInt fStart, PetscInt fEnd, Vec locX, Vec locX_t, Vec faceGeometry, Vec cellGeometry, Vec locGrad, PetscInt *Nface, PetscScalar **uL, PetscScalar **uR) 33752f856554SMatthew G. Knepley { 33762f856554SMatthew G. Knepley PetscErrorCode ierr; 33772f856554SMatthew G. Knepley 33782f856554SMatthew G. Knepley PetscFunctionBegin; 33792f856554SMatthew G. Knepley ierr = DMRestoreWorkArray(dm, 0, MPIU_SCALAR, uL);CHKERRQ(ierr); 33802f856554SMatthew G. Knepley ierr = DMRestoreWorkArray(dm, 0, MPIU_SCALAR, uR);CHKERRQ(ierr); 33812f856554SMatthew G. Knepley PetscFunctionReturn(0); 33822f856554SMatthew G. Knepley } 33832f856554SMatthew G. Knepley 33842f856554SMatthew G. Knepley /*@C 33852f856554SMatthew G. Knepley DMPlexGetFaceGeometry - Retrieve the geometric values for a chunk of faces 33862f856554SMatthew G. Knepley 33872f856554SMatthew G. Knepley Input Parameters: 33882f856554SMatthew G. Knepley + dm - The DM 33892f856554SMatthew G. Knepley . fStart - The first face to include 33902f856554SMatthew G. Knepley . fEnd - The first face to exclude 33912f856554SMatthew G. Knepley . faceGeometry - A local vector with face geometry 33922f856554SMatthew G. Knepley - cellGeometry - A local vector with cell geometry 33932f856554SMatthew G. Knepley 33942f856554SMatthew G. Knepley Output Parameters: 33952f856554SMatthew G. Knepley + Nface - The number of faces with field values 33962f856554SMatthew G. Knepley . fgeom - The extract the face centroid and normal 33972f856554SMatthew G. Knepley - vol - The cell volume 33982f856554SMatthew G. Knepley 33992f856554SMatthew G. Knepley Level: developer 34002f856554SMatthew G. Knepley 34012f856554SMatthew G. Knepley .seealso: DMPlexGetCellFields() 34022f856554SMatthew G. Knepley @*/ 34032f856554SMatthew G. Knepley PetscErrorCode DMPlexGetFaceGeometry(DM dm, PetscInt fStart, PetscInt fEnd, Vec faceGeometry, Vec cellGeometry, PetscInt *Nface, PetscFVFaceGeom **fgeom, PetscReal **vol) 34042f856554SMatthew G. Knepley { 34052f856554SMatthew G. Knepley DM dmFace, dmCell; 34062f856554SMatthew G. Knepley DMLabel ghostLabel; 34072f856554SMatthew G. Knepley const PetscScalar *facegeom, *cellgeom; 34082f856554SMatthew G. Knepley PetscInt dim, numFaces = fEnd - fStart, iface, face; 34092f856554SMatthew G. Knepley PetscErrorCode ierr; 34102f856554SMatthew G. Knepley 34112f856554SMatthew G. Knepley PetscFunctionBegin; 34122f856554SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 34132f856554SMatthew G. Knepley PetscValidHeaderSpecific(faceGeometry, VEC_CLASSID, 4); 34142f856554SMatthew G. Knepley PetscValidHeaderSpecific(cellGeometry, VEC_CLASSID, 5); 34152f856554SMatthew G. Knepley PetscValidPointer(fgeom, 6); 34162f856554SMatthew G. Knepley PetscValidPointer(vol, 7); 34172f856554SMatthew G. Knepley ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr); 34182f856554SMatthew G. Knepley ierr = DMGetLabel(dm, "ghost", &ghostLabel);CHKERRQ(ierr); 34192f856554SMatthew G. Knepley ierr = VecGetDM(faceGeometry, &dmFace);CHKERRQ(ierr); 34202f856554SMatthew G. Knepley ierr = VecGetArrayRead(faceGeometry, &facegeom);CHKERRQ(ierr); 34212f856554SMatthew G. Knepley ierr = VecGetDM(cellGeometry, &dmCell);CHKERRQ(ierr); 34222f856554SMatthew G. Knepley ierr = VecGetArrayRead(cellGeometry, &cellgeom);CHKERRQ(ierr); 34232f856554SMatthew G. Knepley ierr = PetscMalloc1(numFaces, fgeom);CHKERRQ(ierr); 34242f856554SMatthew G. Knepley ierr = DMGetWorkArray(dm, numFaces*2, MPIU_SCALAR, vol);CHKERRQ(ierr); 34252f856554SMatthew G. Knepley for (face = fStart, iface = 0; face < fEnd; ++face) { 34262f856554SMatthew G. Knepley const PetscInt *cells; 34272f856554SMatthew G. Knepley PetscFVFaceGeom *fg; 34282f856554SMatthew G. Knepley PetscFVCellGeom *cgL, *cgR; 34292f856554SMatthew G. Knepley PetscFVFaceGeom *fgeoml = *fgeom; 34302f856554SMatthew G. Knepley PetscReal *voll = *vol; 34312f856554SMatthew G. Knepley PetscInt ghost, d, nchild, nsupp; 34322f856554SMatthew G. Knepley 34332f856554SMatthew G. Knepley ierr = DMLabelGetValue(ghostLabel, face, &ghost);CHKERRQ(ierr); 34342f856554SMatthew G. Knepley ierr = DMPlexGetSupportSize(dm, face, &nsupp);CHKERRQ(ierr); 34352f856554SMatthew G. Knepley ierr = DMPlexGetTreeChildren(dm, face, &nchild, NULL);CHKERRQ(ierr); 34362f856554SMatthew G. Knepley if (ghost >= 0 || nsupp > 2 || nchild > 0) continue; 34372f856554SMatthew G. Knepley ierr = DMPlexPointLocalRead(dmFace, face, facegeom, &fg);CHKERRQ(ierr); 34382f856554SMatthew G. Knepley ierr = DMPlexGetSupport(dm, face, &cells);CHKERRQ(ierr); 34392f856554SMatthew G. Knepley ierr = DMPlexPointLocalRead(dmCell, cells[0], cellgeom, &cgL);CHKERRQ(ierr); 34402f856554SMatthew G. Knepley ierr = DMPlexPointLocalRead(dmCell, cells[1], cellgeom, &cgR);CHKERRQ(ierr); 34412f856554SMatthew G. Knepley for (d = 0; d < dim; ++d) { 34422f856554SMatthew G. Knepley fgeoml[iface].centroid[d] = fg->centroid[d]; 34432f856554SMatthew G. Knepley fgeoml[iface].normal[d] = fg->normal[d]; 34442f856554SMatthew G. Knepley } 34452f856554SMatthew G. Knepley voll[iface*2+0] = cgL->volume; 34462f856554SMatthew G. Knepley voll[iface*2+1] = cgR->volume; 34472f856554SMatthew G. Knepley ++iface; 34482f856554SMatthew G. Knepley } 34492f856554SMatthew G. Knepley *Nface = iface; 34502f856554SMatthew G. Knepley ierr = VecRestoreArrayRead(faceGeometry, &facegeom);CHKERRQ(ierr); 34512f856554SMatthew G. Knepley ierr = VecRestoreArrayRead(cellGeometry, &cellgeom);CHKERRQ(ierr); 34522f856554SMatthew G. Knepley PetscFunctionReturn(0); 34532f856554SMatthew G. Knepley } 34542f856554SMatthew G. Knepley 34552f856554SMatthew G. Knepley /*@C 34562f856554SMatthew G. Knepley DMPlexRestoreFaceGeometry - Restore the field values values for a chunk of faces 34572f856554SMatthew G. Knepley 34582f856554SMatthew G. Knepley Input Parameters: 34592f856554SMatthew G. Knepley + dm - The DM 34602f856554SMatthew G. Knepley . fStart - The first face to include 34612f856554SMatthew G. Knepley . fEnd - The first face to exclude 34622f856554SMatthew G. Knepley . faceGeometry - A local vector with face geometry 34632f856554SMatthew G. Knepley - cellGeometry - A local vector with cell geometry 34642f856554SMatthew G. Knepley 34652f856554SMatthew G. Knepley Output Parameters: 34662f856554SMatthew G. Knepley + Nface - The number of faces with field values 34672f856554SMatthew G. Knepley . fgeom - The extract the face centroid and normal 34682f856554SMatthew G. Knepley - vol - The cell volume 34692f856554SMatthew G. Knepley 34702f856554SMatthew G. Knepley Level: developer 34712f856554SMatthew G. Knepley 34722f856554SMatthew G. Knepley .seealso: DMPlexGetFaceFields() 34732f856554SMatthew G. Knepley @*/ 34742f856554SMatthew G. Knepley PetscErrorCode DMPlexRestoreFaceGeometry(DM dm, PetscInt fStart, PetscInt fEnd, Vec faceGeometry, Vec cellGeometry, PetscInt *Nface, PetscFVFaceGeom **fgeom, PetscReal **vol) 34752f856554SMatthew G. Knepley { 34762f856554SMatthew G. Knepley PetscErrorCode ierr; 34772f856554SMatthew G. Knepley 34782f856554SMatthew G. Knepley PetscFunctionBegin; 34792f856554SMatthew G. Knepley ierr = PetscFree(*fgeom);CHKERRQ(ierr); 34802f856554SMatthew G. Knepley ierr = DMRestoreWorkArray(dm, 0, MPIU_REAL, vol);CHKERRQ(ierr); 34812f856554SMatthew G. Knepley PetscFunctionReturn(0); 34822f856554SMatthew G. Knepley } 34832f856554SMatthew G. Knepley 3484a1cf66bbSMatthew G. Knepley PetscErrorCode DMSNESGetFEGeom(DMField coordField, IS pointIS, PetscQuadrature quad, PetscBool faceData, PetscFEGeom **geom) 3485a1cf66bbSMatthew G. Knepley { 3486a1cf66bbSMatthew G. Knepley char composeStr[33] = {0}; 3487a1cf66bbSMatthew G. Knepley PetscObjectId id; 3488a1cf66bbSMatthew G. Knepley PetscContainer container; 3489a1cf66bbSMatthew G. Knepley PetscErrorCode ierr; 3490a1cf66bbSMatthew G. Knepley 3491a1cf66bbSMatthew G. Knepley PetscFunctionBegin; 3492a1cf66bbSMatthew G. Knepley ierr = PetscObjectGetId((PetscObject)quad,&id);CHKERRQ(ierr); 3493a1cf66bbSMatthew G. Knepley ierr = PetscSNPrintf(composeStr, 32, "DMSNESGetFEGeom_%x\n", id);CHKERRQ(ierr); 3494a1cf66bbSMatthew G. Knepley ierr = PetscObjectQuery((PetscObject) pointIS, composeStr, (PetscObject *) &container);CHKERRQ(ierr); 3495a1cf66bbSMatthew G. Knepley if (container) { 3496a1cf66bbSMatthew G. Knepley ierr = PetscContainerGetPointer(container, (void **) geom);CHKERRQ(ierr); 3497a1cf66bbSMatthew G. Knepley } else { 3498a1cf66bbSMatthew G. Knepley ierr = DMFieldCreateFEGeom(coordField, pointIS, quad, faceData, geom);CHKERRQ(ierr); 3499a1cf66bbSMatthew G. Knepley ierr = PetscContainerCreate(PETSC_COMM_SELF,&container);CHKERRQ(ierr); 3500a1cf66bbSMatthew G. Knepley ierr = PetscContainerSetPointer(container, (void *) *geom);CHKERRQ(ierr); 3501a1cf66bbSMatthew G. Knepley ierr = PetscContainerSetUserDestroy(container, PetscContainerUserDestroy_PetscFEGeom);CHKERRQ(ierr); 3502a1cf66bbSMatthew G. Knepley ierr = PetscObjectCompose((PetscObject) pointIS, composeStr, (PetscObject) container);CHKERRQ(ierr); 3503a1cf66bbSMatthew G. Knepley ierr = PetscContainerDestroy(&container);CHKERRQ(ierr); 3504a1cf66bbSMatthew G. Knepley } 3505a1cf66bbSMatthew G. Knepley PetscFunctionReturn(0); 3506a1cf66bbSMatthew G. Knepley } 3507a1cf66bbSMatthew G. Knepley 3508a1cf66bbSMatthew G. Knepley PetscErrorCode DMSNESRestoreFEGeom(DMField coordField, IS pointIS, PetscQuadrature quad, PetscBool faceData, PetscFEGeom **geom) 3509a1cf66bbSMatthew G. Knepley { 3510a1cf66bbSMatthew G. Knepley PetscFunctionBegin; 3511a1cf66bbSMatthew G. Knepley *geom = NULL; 3512a1cf66bbSMatthew G. Knepley PetscFunctionReturn(0); 3513a1cf66bbSMatthew G. Knepley } 3514a1cf66bbSMatthew G. Knepley 351592d50984SMatthew G. Knepley PetscErrorCode DMPlexComputeResidual_Patch_Internal(DM dm, PetscSection section, IS cellIS, PetscReal t, Vec locX, Vec locX_t, Vec locF, void *user) 351692d50984SMatthew G. Knepley { 351792d50984SMatthew G. Knepley DM_Plex *mesh = (DM_Plex *) dm->data; 351892d50984SMatthew G. Knepley const char *name = "Residual"; 351992d50984SMatthew G. Knepley DM dmAux = NULL; 352092d50984SMatthew G. Knepley DMLabel ghostLabel = NULL; 352192d50984SMatthew G. Knepley PetscDS prob = NULL; 352292d50984SMatthew G. Knepley PetscDS probAux = NULL; 352392d50984SMatthew G. Knepley PetscBool useFEM = PETSC_FALSE; 352492d50984SMatthew G. Knepley PetscBool isImplicit = (locX_t || t == PETSC_MIN_REAL) ? PETSC_TRUE : PETSC_FALSE; 352592d50984SMatthew G. Knepley DMField coordField = NULL; 3526c0006e53SPatrick Farrell Vec locA; 3527c0006e53SPatrick Farrell PetscScalar *u = NULL, *u_t, *a, *uL = NULL, *uR = NULL; 352892d50984SMatthew G. Knepley IS chunkIS; 352992d50984SMatthew G. Knepley const PetscInt *cells; 353092d50984SMatthew G. Knepley PetscInt cStart, cEnd, numCells; 3531364207b6SKarl Rupp PetscInt Nf, f, totDim, totDimAux, numChunks, cellChunkSize, chunk, fStart, fEnd; 353292d50984SMatthew G. Knepley PetscInt maxDegree = PETSC_MAX_INT; 353392d50984SMatthew G. Knepley PetscQuadrature affineQuad = NULL, *quads = NULL; 353492d50984SMatthew G. Knepley PetscFEGeom *affineGeom = NULL, **geoms = NULL; 353592d50984SMatthew G. Knepley PetscErrorCode ierr; 353692d50984SMatthew G. Knepley 353792d50984SMatthew G. Knepley PetscFunctionBegin; 353892d50984SMatthew G. Knepley ierr = PetscLogEventBegin(DMPLEX_ResidualFEM,dm,0,0,0);CHKERRQ(ierr); 353992d50984SMatthew G. Knepley /* FEM+FVM */ 354092d50984SMatthew G. Knepley /* 1: Get sizes from dm and dmAux */ 354192d50984SMatthew G. Knepley ierr = DMGetLabel(dm, "ghost", &ghostLabel);CHKERRQ(ierr); 354292d50984SMatthew G. Knepley ierr = DMGetDS(dm, &prob);CHKERRQ(ierr); 354392d50984SMatthew G. Knepley ierr = PetscDSGetNumFields(prob, &Nf);CHKERRQ(ierr); 354492d50984SMatthew G. Knepley ierr = PetscDSGetTotalDimension(prob, &totDim);CHKERRQ(ierr); 354592d50984SMatthew G. Knepley ierr = PetscObjectQuery((PetscObject) dm, "A", (PetscObject *) &locA);CHKERRQ(ierr); 354692d50984SMatthew G. Knepley if (locA) { 354792d50984SMatthew G. Knepley ierr = VecGetDM(locA, &dmAux);CHKERRQ(ierr); 354892d50984SMatthew G. Knepley ierr = DMGetDS(dmAux, &probAux);CHKERRQ(ierr); 354992d50984SMatthew G. Knepley ierr = PetscDSGetTotalDimension(probAux, &totDimAux);CHKERRQ(ierr); 355092d50984SMatthew G. Knepley } 355192d50984SMatthew G. Knepley /* 2: Get geometric data */ 355292d50984SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 355392d50984SMatthew G. Knepley PetscObject obj; 355492d50984SMatthew G. Knepley PetscClassId id; 355592d50984SMatthew G. Knepley PetscBool fimp; 355692d50984SMatthew G. Knepley 355792d50984SMatthew G. Knepley ierr = PetscDSGetImplicit(prob, f, &fimp);CHKERRQ(ierr); 355892d50984SMatthew G. Knepley if (isImplicit != fimp) continue; 355992d50984SMatthew G. Knepley ierr = PetscDSGetDiscretization(prob, f, &obj);CHKERRQ(ierr); 356092d50984SMatthew G. Knepley ierr = PetscObjectGetClassId(obj, &id);CHKERRQ(ierr); 356192d50984SMatthew G. Knepley if (id == PETSCFE_CLASSID) {useFEM = PETSC_TRUE;} 3562364207b6SKarl Rupp if (id == PETSCFV_CLASSID) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Use of FVM with PCPATCH not yet implemented"); 356392d50984SMatthew G. Knepley } 356492d50984SMatthew G. Knepley if (useFEM) { 356592d50984SMatthew G. Knepley ierr = DMGetCoordinateField(dm, &coordField);CHKERRQ(ierr); 356692d50984SMatthew G. Knepley ierr = DMFieldGetDegree(coordField,cellIS,NULL,&maxDegree);CHKERRQ(ierr); 356792d50984SMatthew G. Knepley if (maxDegree <= 1) { 356892d50984SMatthew G. Knepley ierr = DMFieldCreateDefaultQuadrature(coordField,cellIS,&affineQuad);CHKERRQ(ierr); 356992d50984SMatthew G. Knepley if (affineQuad) { 357092d50984SMatthew G. Knepley ierr = DMSNESGetFEGeom(coordField,cellIS,affineQuad,PETSC_FALSE,&affineGeom);CHKERRQ(ierr); 357192d50984SMatthew G. Knepley } 357292d50984SMatthew G. Knepley } else { 357392d50984SMatthew G. Knepley ierr = PetscCalloc2(Nf,&quads,Nf,&geoms);CHKERRQ(ierr); 357492d50984SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 357592d50984SMatthew G. Knepley PetscObject obj; 357692d50984SMatthew G. Knepley PetscClassId id; 357792d50984SMatthew G. Knepley PetscBool fimp; 357892d50984SMatthew G. Knepley 357992d50984SMatthew G. Knepley ierr = PetscDSGetImplicit(prob, f, &fimp);CHKERRQ(ierr); 358092d50984SMatthew G. Knepley if (isImplicit != fimp) continue; 358192d50984SMatthew G. Knepley ierr = PetscDSGetDiscretization(prob, f, &obj);CHKERRQ(ierr); 358292d50984SMatthew G. Knepley ierr = PetscObjectGetClassId(obj, &id);CHKERRQ(ierr); 358392d50984SMatthew G. Knepley if (id == PETSCFE_CLASSID) { 358492d50984SMatthew G. Knepley PetscFE fe = (PetscFE) obj; 358592d50984SMatthew G. Knepley 358692d50984SMatthew G. Knepley ierr = PetscFEGetQuadrature(fe, &quads[f]);CHKERRQ(ierr); 358792d50984SMatthew G. Knepley ierr = PetscObjectReference((PetscObject)quads[f]);CHKERRQ(ierr); 358892d50984SMatthew G. Knepley ierr = DMSNESGetFEGeom(coordField,cellIS,quads[f],PETSC_FALSE,&geoms[f]);CHKERRQ(ierr); 358992d50984SMatthew G. Knepley } 359092d50984SMatthew G. Knepley } 359192d50984SMatthew G. Knepley } 359292d50984SMatthew G. Knepley } 359392d50984SMatthew G. Knepley /* Loop over chunks */ 359492d50984SMatthew G. Knepley ierr = ISGetPointRange(cellIS, &cStart, &cEnd, &cells);CHKERRQ(ierr); 359592d50984SMatthew G. Knepley ierr = DMPlexGetHeightStratum(dm, 1, &fStart, &fEnd);CHKERRQ(ierr); 359692d50984SMatthew G. Knepley if (useFEM) {ierr = ISCreate(PETSC_COMM_SELF, &chunkIS);CHKERRQ(ierr);} 359792d50984SMatthew G. Knepley numCells = cEnd - cStart; 359892d50984SMatthew G. Knepley numChunks = 1; 359992d50984SMatthew G. Knepley cellChunkSize = numCells/numChunks; 360092d50984SMatthew G. Knepley numChunks = PetscMin(1,numCells); 360192d50984SMatthew G. Knepley for (chunk = 0; chunk < numChunks; ++chunk) { 3602c0006e53SPatrick Farrell PetscScalar *elemVec, *fluxL = NULL, *fluxR = NULL; 3603c0006e53SPatrick Farrell PetscReal *vol = NULL; 3604c0006e53SPatrick Farrell PetscFVFaceGeom *fgeom = NULL; 360592d50984SMatthew G. Knepley PetscInt cS = cStart+chunk*cellChunkSize, cE = PetscMin(cS+cellChunkSize, cEnd), numCells = cE - cS, c; 3606c0006e53SPatrick Farrell PetscInt numFaces = 0; 360792d50984SMatthew G. Knepley 360892d50984SMatthew G. Knepley /* Extract field coefficients */ 360992d50984SMatthew G. Knepley if (useFEM) { 361092d50984SMatthew G. Knepley ierr = ISGetPointSubrange(chunkIS, cS, cE, cells);CHKERRQ(ierr); 361192d50984SMatthew G. Knepley ierr = DMPlexGetCellFields(dm, chunkIS, locX, locX_t, locA, &u, &u_t, &a);CHKERRQ(ierr); 361292d50984SMatthew G. Knepley ierr = DMGetWorkArray(dm, numCells*totDim, MPIU_SCALAR, &elemVec);CHKERRQ(ierr); 3613580bdb30SBarry Smith ierr = PetscArrayzero(elemVec, numCells*totDim);CHKERRQ(ierr); 361492d50984SMatthew G. Knepley } 361592d50984SMatthew G. Knepley /* TODO We will interlace both our field coefficients (u, u_t, uL, uR, etc.) and our output (elemVec, fL, fR). I think this works */ 361692d50984SMatthew G. Knepley /* Loop over fields */ 361792d50984SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 361892d50984SMatthew G. Knepley PetscObject obj; 361992d50984SMatthew G. Knepley PetscClassId id; 362092d50984SMatthew G. Knepley PetscBool fimp; 362192d50984SMatthew G. Knepley PetscInt numChunks, numBatches, batchSize, numBlocks, blockSize, Ne, Nr, offset; 362292d50984SMatthew G. Knepley 362392d50984SMatthew G. Knepley ierr = PetscDSGetImplicit(prob, f, &fimp);CHKERRQ(ierr); 362492d50984SMatthew G. Knepley if (isImplicit != fimp) continue; 362592d50984SMatthew G. Knepley ierr = PetscDSGetDiscretization(prob, f, &obj);CHKERRQ(ierr); 362692d50984SMatthew G. Knepley ierr = PetscObjectGetClassId(obj, &id);CHKERRQ(ierr); 362792d50984SMatthew G. Knepley if (id == PETSCFE_CLASSID) { 362892d50984SMatthew G. Knepley PetscFE fe = (PetscFE) obj; 362992d50984SMatthew G. Knepley PetscFEGeom *geom = affineGeom ? affineGeom : geoms[f]; 363092d50984SMatthew G. Knepley PetscFEGeom *chunkGeom = NULL; 363192d50984SMatthew G. Knepley PetscQuadrature quad = affineQuad ? affineQuad : quads[f]; 363292d50984SMatthew G. Knepley PetscInt Nq, Nb; 363392d50984SMatthew G. Knepley 363492d50984SMatthew G. Knepley ierr = PetscFEGetTileSizes(fe, NULL, &numBlocks, NULL, &numBatches);CHKERRQ(ierr); 363592d50984SMatthew G. Knepley ierr = PetscQuadratureGetData(quad, NULL, NULL, &Nq, NULL, NULL);CHKERRQ(ierr); 363692d50984SMatthew G. Knepley ierr = PetscFEGetDimension(fe, &Nb);CHKERRQ(ierr); 363792d50984SMatthew G. Knepley blockSize = Nb; 363892d50984SMatthew G. Knepley batchSize = numBlocks * blockSize; 363992d50984SMatthew G. Knepley ierr = PetscFESetTileSizes(fe, blockSize, numBlocks, batchSize, numBatches);CHKERRQ(ierr); 364092d50984SMatthew G. Knepley numChunks = numCells / (numBatches*batchSize); 364192d50984SMatthew G. Knepley Ne = numChunks*numBatches*batchSize; 364292d50984SMatthew G. Knepley Nr = numCells % (numBatches*batchSize); 364392d50984SMatthew G. Knepley offset = numCells - Nr; 364492d50984SMatthew G. Knepley /* Integrate FE residual to get elemVec (need fields at quadrature points) */ 364592d50984SMatthew G. Knepley /* For FV, I think we use a P0 basis and the cell coefficients (for subdivided cells, we can tweak the basis tabulation to be the indicator function) */ 364692d50984SMatthew G. Knepley ierr = PetscFEGeomGetChunk(geom,0,offset,&chunkGeom);CHKERRQ(ierr); 36474bee2e38SMatthew G. Knepley ierr = PetscFEIntegrateResidual(prob, f, Ne, chunkGeom, u, u_t, probAux, a, t, elemVec);CHKERRQ(ierr); 364892d50984SMatthew G. Knepley ierr = PetscFEGeomGetChunk(geom,offset,numCells,&chunkGeom);CHKERRQ(ierr); 36494bee2e38SMatthew G. Knepley ierr = PetscFEIntegrateResidual(prob, f, Nr, chunkGeom, &u[offset*totDim], u_t ? &u_t[offset*totDim] : NULL, probAux, &a[offset*totDimAux], t, &elemVec[offset*totDim]);CHKERRQ(ierr); 365092d50984SMatthew G. Knepley ierr = PetscFEGeomRestoreChunk(geom,offset,numCells,&chunkGeom);CHKERRQ(ierr); 365192d50984SMatthew G. Knepley } else if (id == PETSCFV_CLASSID) { 365292d50984SMatthew G. Knepley PetscFV fv = (PetscFV) obj; 365392d50984SMatthew G. Knepley 365492d50984SMatthew G. Knepley Ne = numFaces; 365592d50984SMatthew G. Knepley /* Riemann solve over faces (need fields at face centroids) */ 365692d50984SMatthew G. Knepley /* We need to evaluate FE fields at those coordinates */ 365792d50984SMatthew G. Knepley ierr = PetscFVIntegrateRHSFunction(fv, prob, f, Ne, fgeom, vol, uL, uR, fluxL, fluxR);CHKERRQ(ierr); 3658ff1e0c32SBarry Smith } else SETERRQ1(PetscObjectComm((PetscObject) dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %D", f); 365992d50984SMatthew G. Knepley } 366092d50984SMatthew G. Knepley /* Loop over domain */ 366192d50984SMatthew G. Knepley if (useFEM) { 366292d50984SMatthew G. Knepley /* Add elemVec to locX */ 366392d50984SMatthew G. Knepley for (c = cS; c < cE; ++c) { 366492d50984SMatthew G. Knepley const PetscInt cell = cells ? cells[c] : c; 366592d50984SMatthew G. Knepley const PetscInt cind = c - cStart; 366692d50984SMatthew G. Knepley 366792d50984SMatthew G. Knepley if (mesh->printFEM > 1) {ierr = DMPrintCellVector(cell, name, totDim, &elemVec[cind*totDim]);CHKERRQ(ierr);} 366892d50984SMatthew G. Knepley if (ghostLabel) { 366992d50984SMatthew G. Knepley PetscInt ghostVal; 367092d50984SMatthew G. Knepley 367192d50984SMatthew G. Knepley ierr = DMLabelGetValue(ghostLabel,cell,&ghostVal);CHKERRQ(ierr); 367292d50984SMatthew G. Knepley if (ghostVal > 0) continue; 367392d50984SMatthew G. Knepley } 367492d50984SMatthew G. Knepley ierr = DMPlexVecSetClosure(dm, section, locF, cell, &elemVec[cind*totDim], ADD_ALL_VALUES);CHKERRQ(ierr); 367592d50984SMatthew G. Knepley } 367692d50984SMatthew G. Knepley } 367792d50984SMatthew G. Knepley /* Handle time derivative */ 367892d50984SMatthew G. Knepley if (locX_t) { 367992d50984SMatthew G. Knepley PetscScalar *x_t, *fa; 368092d50984SMatthew G. Knepley 368192d50984SMatthew G. Knepley ierr = VecGetArray(locF, &fa);CHKERRQ(ierr); 368292d50984SMatthew G. Knepley ierr = VecGetArray(locX_t, &x_t);CHKERRQ(ierr); 368392d50984SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 368492d50984SMatthew G. Knepley PetscFV fv; 368592d50984SMatthew G. Knepley PetscObject obj; 368692d50984SMatthew G. Knepley PetscClassId id; 368792d50984SMatthew G. Knepley PetscInt pdim, d; 368892d50984SMatthew G. Knepley 368992d50984SMatthew G. Knepley ierr = PetscDSGetDiscretization(prob, f, &obj);CHKERRQ(ierr); 369092d50984SMatthew G. Knepley ierr = PetscObjectGetClassId(obj, &id);CHKERRQ(ierr); 369192d50984SMatthew G. Knepley if (id != PETSCFV_CLASSID) continue; 369292d50984SMatthew G. Knepley fv = (PetscFV) obj; 369392d50984SMatthew G. Knepley ierr = PetscFVGetNumComponents(fv, &pdim);CHKERRQ(ierr); 369492d50984SMatthew G. Knepley for (c = cS; c < cE; ++c) { 369592d50984SMatthew G. Knepley const PetscInt cell = cells ? cells[c] : c; 369692d50984SMatthew G. Knepley PetscScalar *u_t, *r; 369792d50984SMatthew G. Knepley 369892d50984SMatthew G. Knepley if (ghostLabel) { 369992d50984SMatthew G. Knepley PetscInt ghostVal; 370092d50984SMatthew G. Knepley 370192d50984SMatthew G. Knepley ierr = DMLabelGetValue(ghostLabel, cell, &ghostVal);CHKERRQ(ierr); 370292d50984SMatthew G. Knepley if (ghostVal > 0) continue; 370392d50984SMatthew G. Knepley } 370492d50984SMatthew G. Knepley ierr = DMPlexPointLocalFieldRead(dm, cell, f, x_t, &u_t);CHKERRQ(ierr); 370592d50984SMatthew G. Knepley ierr = DMPlexPointLocalFieldRef(dm, cell, f, fa, &r);CHKERRQ(ierr); 370692d50984SMatthew G. Knepley for (d = 0; d < pdim; ++d) r[d] += u_t[d]; 370792d50984SMatthew G. Knepley } 370892d50984SMatthew G. Knepley } 370992d50984SMatthew G. Knepley ierr = VecRestoreArray(locX_t, &x_t);CHKERRQ(ierr); 371092d50984SMatthew G. Knepley ierr = VecRestoreArray(locF, &fa);CHKERRQ(ierr); 371192d50984SMatthew G. Knepley } 371292d50984SMatthew G. Knepley if (useFEM) { 371392d50984SMatthew G. Knepley ierr = DMPlexRestoreCellFields(dm, chunkIS, locX, locX_t, locA, &u, &u_t, &a);CHKERRQ(ierr); 371492d50984SMatthew G. Knepley ierr = DMRestoreWorkArray(dm, numCells*totDim, MPIU_SCALAR, &elemVec);CHKERRQ(ierr); 371592d50984SMatthew G. Knepley } 371692d50984SMatthew G. Knepley } 371792d50984SMatthew G. Knepley if (useFEM) {ierr = ISDestroy(&chunkIS);CHKERRQ(ierr);} 371892d50984SMatthew G. Knepley ierr = ISRestorePointRange(cellIS, &cStart, &cEnd, &cells);CHKERRQ(ierr); 371992d50984SMatthew G. Knepley /* TODO Could include boundary residual here (see DMPlexComputeResidual_Internal) */ 372092d50984SMatthew G. Knepley if (useFEM) { 372192d50984SMatthew G. Knepley if (maxDegree <= 1) { 372292d50984SMatthew G. Knepley ierr = DMSNESRestoreFEGeom(coordField,cellIS,affineQuad,PETSC_FALSE,&affineGeom);CHKERRQ(ierr); 372392d50984SMatthew G. Knepley ierr = PetscQuadratureDestroy(&affineQuad);CHKERRQ(ierr); 372492d50984SMatthew G. Knepley } else { 372592d50984SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 372692d50984SMatthew G. Knepley ierr = DMSNESRestoreFEGeom(coordField,cellIS,quads[f],PETSC_FALSE,&geoms[f]);CHKERRQ(ierr); 372792d50984SMatthew G. Knepley ierr = PetscQuadratureDestroy(&quads[f]);CHKERRQ(ierr); 372892d50984SMatthew G. Knepley } 372992d50984SMatthew G. Knepley ierr = PetscFree2(quads,geoms);CHKERRQ(ierr); 373092d50984SMatthew G. Knepley } 373192d50984SMatthew G. Knepley } 373292d50984SMatthew G. Knepley ierr = PetscLogEventEnd(DMPLEX_ResidualFEM,dm,0,0,0);CHKERRQ(ierr); 373392d50984SMatthew G. Knepley PetscFunctionReturn(0); 373492d50984SMatthew G. Knepley } 373592d50984SMatthew G. Knepley 3736a1cf66bbSMatthew G. Knepley /* 3737a1cf66bbSMatthew G. Knepley We always assemble JacP, and if the matrix is different from Jac and two different sets of point functions are provided, we also assemble Jac 3738a1cf66bbSMatthew G. Knepley 3739a1cf66bbSMatthew G. Knepley X - The local solution vector 3740a1cf66bbSMatthew G. Knepley X_t - The local solution time derviative vector, or NULL 3741a1cf66bbSMatthew G. Knepley */ 3742a1cf66bbSMatthew G. Knepley PetscErrorCode DMPlexComputeJacobian_Patch_Internal(DM dm, PetscSection section, PetscSection globalSection, IS cellIS, 3743a1cf66bbSMatthew G. Knepley PetscReal t, PetscReal X_tShift, Vec X, Vec X_t, Mat Jac, Mat JacP, void *ctx) 3744a1cf66bbSMatthew G. Knepley { 3745a1cf66bbSMatthew G. Knepley DM_Plex *mesh = (DM_Plex *) dm->data; 3746a1cf66bbSMatthew G. Knepley const char *name = "Jacobian", *nameP = "JacobianPre"; 3747a1cf66bbSMatthew G. Knepley DM dmAux = NULL; 3748a1cf66bbSMatthew G. Knepley PetscDS prob, probAux = NULL; 3749a1cf66bbSMatthew G. Knepley PetscSection sectionAux = NULL; 3750a1cf66bbSMatthew G. Knepley Vec A; 3751a1cf66bbSMatthew G. Knepley DMField coordField; 3752a1cf66bbSMatthew G. Knepley PetscFEGeom *cgeomFEM; 3753a1cf66bbSMatthew G. Knepley PetscQuadrature qGeom = NULL; 3754a1cf66bbSMatthew G. Knepley Mat J = Jac, JP = JacP; 3755a1cf66bbSMatthew G. Knepley PetscScalar *work, *u = NULL, *u_t = NULL, *a = NULL, *elemMat = NULL, *elemMatP = NULL, *elemMatD = NULL; 37569b2fc754SMatthew G. Knepley PetscBool hasJac, hasPrec, hasDyn, assembleJac, isMatIS, isMatISP, *isFE, hasFV = PETSC_FALSE; 3757a1cf66bbSMatthew G. Knepley const PetscInt *cells; 37589b2fc754SMatthew G. Knepley PetscInt Nf, fieldI, fieldJ, maxDegree, numCells, cStart, cEnd, numChunks, chunkSize, chunk, totDim, totDimAux = 0, sz, wsz, off = 0, offCell = 0; 3759a1cf66bbSMatthew G. Knepley PetscErrorCode ierr; 3760a1cf66bbSMatthew G. Knepley 3761a1cf66bbSMatthew G. Knepley PetscFunctionBegin; 3762a1cf66bbSMatthew G. Knepley CHKMEMQ; 3763a1cf66bbSMatthew G. Knepley ierr = ISGetLocalSize(cellIS, &numCells);CHKERRQ(ierr); 3764a1cf66bbSMatthew G. Knepley ierr = ISGetPointRange(cellIS, &cStart, &cEnd, &cells);CHKERRQ(ierr); 3765a1cf66bbSMatthew G. Knepley ierr = PetscLogEventBegin(DMPLEX_JacobianFEM,dm,0,0,0);CHKERRQ(ierr); 3766a1cf66bbSMatthew G. Knepley ierr = DMGetDS(dm, &prob);CHKERRQ(ierr); 3767a1cf66bbSMatthew G. Knepley ierr = PetscObjectQuery((PetscObject) dm, "dmAux", (PetscObject *) &dmAux);CHKERRQ(ierr); 3768a1cf66bbSMatthew G. Knepley ierr = PetscObjectQuery((PetscObject) dm, "A", (PetscObject *) &A);CHKERRQ(ierr); 3769a1cf66bbSMatthew G. Knepley if (dmAux) { 377092fd8e1eSJed Brown ierr = DMGetLocalSection(dmAux, §ionAux);CHKERRQ(ierr); 3771a1cf66bbSMatthew G. Knepley ierr = DMGetDS(dmAux, &probAux);CHKERRQ(ierr); 3772a1cf66bbSMatthew G. Knepley } 3773a1cf66bbSMatthew G. Knepley /* Get flags */ 3774a1cf66bbSMatthew G. Knepley ierr = PetscDSGetNumFields(prob, &Nf);CHKERRQ(ierr); 3775a1cf66bbSMatthew G. Knepley ierr = DMGetWorkArray(dm, Nf, MPIU_BOOL, &isFE);CHKERRQ(ierr); 3776a1cf66bbSMatthew G. Knepley for (fieldI = 0; fieldI < Nf; ++fieldI) { 3777a1cf66bbSMatthew G. Knepley PetscObject disc; 3778a1cf66bbSMatthew G. Knepley PetscClassId id; 3779a1cf66bbSMatthew G. Knepley ierr = PetscDSGetDiscretization(prob, fieldI, &disc);CHKERRQ(ierr); 3780a1cf66bbSMatthew G. Knepley ierr = PetscObjectGetClassId(disc, &id);CHKERRQ(ierr); 3781a1cf66bbSMatthew G. Knepley if (id == PETSCFE_CLASSID) {isFE[fieldI] = PETSC_TRUE;} 3782a1cf66bbSMatthew G. Knepley else if (id == PETSCFV_CLASSID) {hasFV = PETSC_TRUE; isFE[fieldI] = PETSC_FALSE;} 3783a1cf66bbSMatthew G. Knepley } 3784a1cf66bbSMatthew G. Knepley ierr = PetscDSHasJacobian(prob, &hasJac);CHKERRQ(ierr); 3785a1cf66bbSMatthew G. Knepley ierr = PetscDSHasJacobianPreconditioner(prob, &hasPrec);CHKERRQ(ierr); 3786a1cf66bbSMatthew G. Knepley ierr = PetscDSHasDynamicJacobian(prob, &hasDyn);CHKERRQ(ierr); 3787a1cf66bbSMatthew G. Knepley assembleJac = hasJac && hasPrec && (Jac != JacP) ? PETSC_TRUE : PETSC_FALSE; 3788a1cf66bbSMatthew G. Knepley hasDyn = hasDyn && (X_tShift != 0.0) ? PETSC_TRUE : PETSC_FALSE; 3789a1cf66bbSMatthew G. Knepley ierr = PetscObjectTypeCompare((PetscObject) Jac, MATIS, &isMatIS);CHKERRQ(ierr); 3790a1cf66bbSMatthew G. Knepley ierr = PetscObjectTypeCompare((PetscObject) JacP, MATIS, &isMatISP);CHKERRQ(ierr); 3791a1cf66bbSMatthew G. Knepley /* Setup input data and temp arrays (should be DMGetWorkArray) */ 3792a1cf66bbSMatthew G. Knepley if (isMatISP || isMatISP) {ierr = DMPlexGetSubdomainSection(dm, &globalSection);CHKERRQ(ierr);} 3793a1cf66bbSMatthew G. Knepley if (isMatIS) {ierr = MatISGetLocalMat(Jac, &J);CHKERRQ(ierr);} 3794a1cf66bbSMatthew G. Knepley if (isMatISP) {ierr = MatISGetLocalMat(JacP, &JP);CHKERRQ(ierr);} 3795a1cf66bbSMatthew G. Knepley if (hasFV) {ierr = MatSetOption(JP, MAT_IGNORE_ZERO_ENTRIES, PETSC_TRUE);CHKERRQ(ierr);} /* No allocated space for FV stuff, so ignore the zero entries */ 3796a1cf66bbSMatthew G. Knepley ierr = PetscObjectQuery((PetscObject) dm, "dmAux", (PetscObject *) &dmAux);CHKERRQ(ierr); 3797a1cf66bbSMatthew G. Knepley ierr = PetscObjectQuery((PetscObject) dm, "A", (PetscObject *) &A);CHKERRQ(ierr); 3798a1cf66bbSMatthew G. Knepley ierr = PetscDSGetTotalDimension(prob, &totDim);CHKERRQ(ierr); 3799a1cf66bbSMatthew G. Knepley if (probAux) {ierr = PetscDSGetTotalDimension(probAux, &totDimAux);CHKERRQ(ierr);} 3800a1cf66bbSMatthew G. Knepley CHKMEMQ; 3801a1cf66bbSMatthew G. Knepley /* Compute batch sizes */ 3802a1cf66bbSMatthew G. Knepley if (isFE[0]) { 3803a1cf66bbSMatthew G. Knepley PetscFE fe; 3804a1cf66bbSMatthew G. Knepley PetscQuadrature q; 3805a1cf66bbSMatthew G. Knepley PetscInt numQuadPoints, numBatches, batchSize, numBlocks, blockSize, Nb; 3806a1cf66bbSMatthew G. Knepley 3807a1cf66bbSMatthew G. Knepley ierr = PetscDSGetDiscretization(prob, 0, (PetscObject *) &fe);CHKERRQ(ierr); 3808a1cf66bbSMatthew G. Knepley ierr = PetscFEGetQuadrature(fe, &q);CHKERRQ(ierr); 3809a1cf66bbSMatthew G. Knepley ierr = PetscQuadratureGetData(q, NULL, NULL, &numQuadPoints, NULL, NULL);CHKERRQ(ierr); 3810a1cf66bbSMatthew G. Knepley ierr = PetscFEGetDimension(fe, &Nb);CHKERRQ(ierr); 3811a1cf66bbSMatthew G. Knepley ierr = PetscFEGetTileSizes(fe, NULL, &numBlocks, NULL, &numBatches);CHKERRQ(ierr); 3812a1cf66bbSMatthew G. Knepley blockSize = Nb*numQuadPoints; 3813a1cf66bbSMatthew G. Knepley batchSize = numBlocks * blockSize; 3814a1cf66bbSMatthew G. Knepley chunkSize = numBatches * batchSize; 3815a1cf66bbSMatthew G. Knepley numChunks = numCells / chunkSize + numCells % chunkSize; 3816a1cf66bbSMatthew G. Knepley ierr = PetscFESetTileSizes(fe, blockSize, numBlocks, batchSize, numBatches);CHKERRQ(ierr); 3817a1cf66bbSMatthew G. Knepley } else { 3818a1cf66bbSMatthew G. Knepley chunkSize = numCells; 3819a1cf66bbSMatthew G. Knepley numChunks = 1; 3820a1cf66bbSMatthew G. Knepley } 3821a1cf66bbSMatthew G. Knepley /* Get work space */ 3822a1cf66bbSMatthew G. Knepley wsz = (((X?1:0) + (X_t?1:0) + (dmAux?1:0))*totDim + ((hasJac?1:0) + (hasPrec?1:0) + (hasDyn?1:0))*totDim*totDim)*chunkSize; 3823a1cf66bbSMatthew G. Knepley ierr = DMGetWorkArray(dm, wsz, MPIU_SCALAR, &work);CHKERRQ(ierr); 3824580bdb30SBarry Smith ierr = PetscArrayzero(work, wsz);CHKERRQ(ierr); 3825a1cf66bbSMatthew G. Knepley off = 0; 3826a1cf66bbSMatthew G. Knepley u = X ? (sz = chunkSize*totDim, off += sz, work+off-sz) : NULL; 3827a1cf66bbSMatthew G. Knepley u_t = X_t ? (sz = chunkSize*totDim, off += sz, work+off-sz) : NULL; 3828a1cf66bbSMatthew G. Knepley a = dmAux ? (sz = chunkSize*totDimAux, off += sz, work+off-sz) : NULL; 3829a1cf66bbSMatthew G. Knepley elemMat = hasJac ? (sz = chunkSize*totDim*totDim, off += sz, work+off-sz) : NULL; 3830a1cf66bbSMatthew G. Knepley elemMatP = hasPrec ? (sz = chunkSize*totDim*totDim, off += sz, work+off-sz) : NULL; 3831a1cf66bbSMatthew G. Knepley elemMatD = hasDyn ? (sz = chunkSize*totDim*totDim, off += sz, work+off-sz) : NULL; 3832a1cf66bbSMatthew G. Knepley if (off != wsz) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Error is workspace size %D should be %D", off, wsz); 3833a1cf66bbSMatthew G. Knepley /* Setup geometry */ 3834a1cf66bbSMatthew G. Knepley ierr = DMGetCoordinateField(dm, &coordField);CHKERRQ(ierr); 38359b2fc754SMatthew G. Knepley ierr = DMFieldGetDegree(coordField, cellIS, NULL, &maxDegree);CHKERRQ(ierr); 38369b2fc754SMatthew G. Knepley if (maxDegree <= 1) {ierr = DMFieldCreateDefaultQuadrature(coordField, cellIS, &qGeom);CHKERRQ(ierr);} 3837a1cf66bbSMatthew G. Knepley if (!qGeom) { 3838a1cf66bbSMatthew G. Knepley PetscFE fe; 3839a1cf66bbSMatthew G. Knepley 3840a1cf66bbSMatthew G. Knepley ierr = PetscDSGetDiscretization(prob, 0, (PetscObject *) &fe);CHKERRQ(ierr); 3841a1cf66bbSMatthew G. Knepley ierr = PetscFEGetQuadrature(fe, &qGeom);CHKERRQ(ierr); 3842a1cf66bbSMatthew G. Knepley ierr = PetscObjectReference((PetscObject) qGeom);CHKERRQ(ierr); 3843a1cf66bbSMatthew G. Knepley } 3844a1cf66bbSMatthew G. Knepley ierr = DMSNESGetFEGeom(coordField, cellIS, qGeom, PETSC_FALSE, &cgeomFEM);CHKERRQ(ierr); 3845a1cf66bbSMatthew G. Knepley /* Compute volume integrals */ 3846a1cf66bbSMatthew G. Knepley if (assembleJac) {ierr = MatZeroEntries(J);CHKERRQ(ierr);} 3847a1cf66bbSMatthew G. Knepley ierr = MatZeroEntries(JP);CHKERRQ(ierr); 3848a1cf66bbSMatthew G. Knepley for (chunk = 0; chunk < numChunks; ++chunk, offCell += chunkSize) { 3849a1cf66bbSMatthew G. Knepley const PetscInt Ncell = PetscMin(chunkSize, numCells - offCell); 3850a1cf66bbSMatthew G. Knepley PetscInt c; 3851a1cf66bbSMatthew G. Knepley 3852a1cf66bbSMatthew G. Knepley /* Extract values */ 3853a1cf66bbSMatthew G. Knepley for (c = 0; c < Ncell; ++c) { 3854a1cf66bbSMatthew G. Knepley const PetscInt cell = cells ? cells[c+offCell] : c+offCell; 3855a1cf66bbSMatthew G. Knepley PetscScalar *x = NULL, *x_t = NULL; 3856a1cf66bbSMatthew G. Knepley PetscInt i; 3857a1cf66bbSMatthew G. Knepley 3858a1cf66bbSMatthew G. Knepley if (X) { 3859a1cf66bbSMatthew G. Knepley ierr = DMPlexVecGetClosure(dm, section, X, cell, NULL, &x);CHKERRQ(ierr); 3860a1cf66bbSMatthew G. Knepley for (i = 0; i < totDim; ++i) u[c*totDim+i] = x[i]; 3861a1cf66bbSMatthew G. Knepley ierr = DMPlexVecRestoreClosure(dm, section, X, cell, NULL, &x);CHKERRQ(ierr); 3862a1cf66bbSMatthew G. Knepley } 3863a1cf66bbSMatthew G. Knepley if (X_t) { 3864a1cf66bbSMatthew G. Knepley ierr = DMPlexVecGetClosure(dm, section, X_t, cell, NULL, &x_t);CHKERRQ(ierr); 3865a1cf66bbSMatthew G. Knepley for (i = 0; i < totDim; ++i) u_t[c*totDim+i] = x_t[i]; 3866a1cf66bbSMatthew G. Knepley ierr = DMPlexVecRestoreClosure(dm, section, X_t, cell, NULL, &x_t);CHKERRQ(ierr); 3867a1cf66bbSMatthew G. Knepley } 3868a1cf66bbSMatthew G. Knepley if (dmAux) { 3869a1cf66bbSMatthew G. Knepley ierr = DMPlexVecGetClosure(dmAux, sectionAux, A, cell, NULL, &x);CHKERRQ(ierr); 3870a1cf66bbSMatthew G. Knepley for (i = 0; i < totDimAux; ++i) a[c*totDimAux+i] = x[i]; 3871a1cf66bbSMatthew G. Knepley ierr = DMPlexVecRestoreClosure(dmAux, sectionAux, A, cell, NULL, &x);CHKERRQ(ierr); 3872a1cf66bbSMatthew G. Knepley } 3873a1cf66bbSMatthew G. Knepley } 3874a1cf66bbSMatthew G. Knepley CHKMEMQ; 3875a1cf66bbSMatthew G. Knepley for (fieldI = 0; fieldI < Nf; ++fieldI) { 3876a1cf66bbSMatthew G. Knepley PetscFE fe; 3877a1cf66bbSMatthew G. Knepley ierr = PetscDSGetDiscretization(prob, fieldI, (PetscObject *) &fe);CHKERRQ(ierr); 3878a1cf66bbSMatthew G. Knepley for (fieldJ = 0; fieldJ < Nf; ++fieldJ) { 38794bee2e38SMatthew G. Knepley if (hasJac) {ierr = PetscFEIntegrateJacobian(prob, PETSCFE_JACOBIAN, fieldI, fieldJ, Ncell, cgeomFEM, u, u_t, probAux, a, t, X_tShift, elemMat);CHKERRQ(ierr);} 38804bee2e38SMatthew G. Knepley if (hasPrec) {ierr = PetscFEIntegrateJacobian(prob, PETSCFE_JACOBIAN_PRE, fieldI, fieldJ, Ncell, cgeomFEM, u, u_t, probAux, a, t, X_tShift, elemMatP);CHKERRQ(ierr);} 38814bee2e38SMatthew G. Knepley if (hasDyn) {ierr = PetscFEIntegrateJacobian(prob, PETSCFE_JACOBIAN_DYN, fieldI, fieldJ, Ncell, cgeomFEM, u, u_t, probAux, a, t, X_tShift, elemMatD);CHKERRQ(ierr);} 3882a1cf66bbSMatthew G. Knepley } 3883a1cf66bbSMatthew G. Knepley /* For finite volume, add the identity */ 3884a1cf66bbSMatthew G. Knepley if (!isFE[fieldI]) { 3885a1cf66bbSMatthew G. Knepley PetscFV fv; 3886a1cf66bbSMatthew G. Knepley PetscInt eOffset = 0, Nc, fc, foff; 3887a1cf66bbSMatthew G. Knepley 3888a1cf66bbSMatthew G. Knepley ierr = PetscDSGetFieldOffset(prob, fieldI, &foff);CHKERRQ(ierr); 3889a1cf66bbSMatthew G. Knepley ierr = PetscDSGetDiscretization(prob, fieldI, (PetscObject *) &fv);CHKERRQ(ierr); 3890a1cf66bbSMatthew G. Knepley ierr = PetscFVGetNumComponents(fv, &Nc);CHKERRQ(ierr); 3891a1cf66bbSMatthew G. Knepley for (c = 0; c < chunkSize; ++c, eOffset += totDim*totDim) { 3892a1cf66bbSMatthew G. Knepley for (fc = 0; fc < Nc; ++fc) { 3893a1cf66bbSMatthew G. Knepley const PetscInt i = foff + fc; 3894a1cf66bbSMatthew G. Knepley if (hasJac) {elemMat [eOffset+i*totDim+i] = 1.0;} 3895a1cf66bbSMatthew G. Knepley if (hasPrec) {elemMatP[eOffset+i*totDim+i] = 1.0;} 3896a1cf66bbSMatthew G. Knepley } 3897a1cf66bbSMatthew G. Knepley } 3898a1cf66bbSMatthew G. Knepley } 3899a1cf66bbSMatthew G. Knepley } 3900a1cf66bbSMatthew G. Knepley CHKMEMQ; 3901a1cf66bbSMatthew G. Knepley /* Add contribution from X_t */ 3902a1cf66bbSMatthew G. Knepley if (hasDyn) {for (c = 0; c < chunkSize*totDim*totDim; ++c) elemMat[c] += X_tShift*elemMatD[c];} 3903a1cf66bbSMatthew G. Knepley /* Insert values into matrix */ 3904a1cf66bbSMatthew G. Knepley for (c = 0; c < Ncell; ++c) { 3905a1cf66bbSMatthew G. Knepley const PetscInt cell = cells ? cells[c+offCell] : c+offCell; 3906a1cf66bbSMatthew G. Knepley if (mesh->printFEM > 1) { 3907a1cf66bbSMatthew G. Knepley if (hasJac) {ierr = DMPrintCellMatrix(cell, name, totDim, totDim, &elemMat[(c-cStart)*totDim*totDim]);CHKERRQ(ierr);} 3908a1cf66bbSMatthew G. Knepley if (hasPrec) {ierr = DMPrintCellMatrix(cell, nameP, totDim, totDim, &elemMatP[(c-cStart)*totDim*totDim]);CHKERRQ(ierr);} 3909a1cf66bbSMatthew G. Knepley } 3910a1cf66bbSMatthew G. Knepley if (assembleJac) {ierr = DMPlexMatSetClosure(dm, section, globalSection, Jac, cell, &elemMat[(c-cStart)*totDim*totDim], ADD_VALUES);CHKERRQ(ierr);} 3911a1cf66bbSMatthew G. Knepley ierr = DMPlexMatSetClosure(dm, section, globalSection, JP, cell, &elemMat[(c-cStart)*totDim*totDim], ADD_VALUES);CHKERRQ(ierr); 3912a1cf66bbSMatthew G. Knepley } 3913a1cf66bbSMatthew G. Knepley CHKMEMQ; 3914a1cf66bbSMatthew G. Knepley } 3915a1cf66bbSMatthew G. Knepley /* Cleanup */ 3916a1cf66bbSMatthew G. Knepley ierr = DMSNESRestoreFEGeom(coordField, cellIS, qGeom, PETSC_FALSE, &cgeomFEM);CHKERRQ(ierr); 3917a1cf66bbSMatthew G. Knepley ierr = PetscQuadratureDestroy(&qGeom);CHKERRQ(ierr); 3918a1cf66bbSMatthew G. Knepley if (hasFV) {ierr = MatSetOption(JacP, MAT_IGNORE_ZERO_ENTRIES, PETSC_FALSE);CHKERRQ(ierr);} 3919a1cf66bbSMatthew G. Knepley ierr = DMRestoreWorkArray(dm, Nf, MPIU_BOOL, &isFE);CHKERRQ(ierr); 3920a1cf66bbSMatthew G. Knepley ierr = DMRestoreWorkArray(dm, ((1 + (X_t?1:0) + (dmAux?1:0))*totDim + ((hasJac?1:0) + (hasPrec?1:0) + (hasDyn?1:0))*totDim*totDim)*chunkSize, MPIU_SCALAR, &work);CHKERRQ(ierr); 3921a1cf66bbSMatthew G. Knepley /* Compute boundary integrals */ 3922a1cf66bbSMatthew G. Knepley /* ierr = DMPlexComputeBdJacobian_Internal(dm, X, X_t, t, X_tShift, Jac, JacP, ctx);CHKERRQ(ierr); */ 3923a1cf66bbSMatthew G. Knepley /* Assemble matrix */ 3924a1cf66bbSMatthew G. Knepley if (assembleJac) {ierr = MatAssemblyBegin(Jac, MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);ierr = MatAssemblyEnd(Jac, MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);} 3925a1cf66bbSMatthew G. Knepley ierr = MatAssemblyBegin(JacP, MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);ierr = MatAssemblyEnd(JacP, MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 3926a1cf66bbSMatthew G. Knepley ierr = PetscLogEventEnd(DMPLEX_JacobianFEM,dm,0,0,0);CHKERRQ(ierr); 3927a1cf66bbSMatthew G. Knepley CHKMEMQ; 3928a1cf66bbSMatthew G. Knepley PetscFunctionReturn(0); 3929a1cf66bbSMatthew G. Knepley } 3930