1af0996ceSBarry Smith #include <petsc/private/dmpleximpl.h> /*I "petscdmplex.h" I*/ 2da97024aSMatthew G. Knepley #include <petscsf.h> 3cb1e1211SMatthew G Knepley 48e3a2eefSMatthew G. Knepley #include <petscblaslapack.h> 5e8f14785SLisandro Dalcin #include <petsc/private/hashsetij.h> 6af0996ceSBarry Smith #include <petsc/private/petscfeimpl.h> 7af0996ceSBarry Smith #include <petsc/private/petscfvimpl.h> 8a0845e3aSMatthew G. Knepley 95f0b18bfSMatthew G. Knepley PetscBool Clementcite = PETSC_FALSE; 105f0b18bfSMatthew G. Knepley const char ClementCitation[] = "@article{clement1975approximation,\n" 115f0b18bfSMatthew G. Knepley " title = {Approximation by finite element functions using local regularization},\n" 125f0b18bfSMatthew G. Knepley " author = {Philippe Cl{\\'e}ment},\n" 135f0b18bfSMatthew G. Knepley " journal = {Revue fran{\\c{c}}aise d'automatique, informatique, recherche op{\\'e}rationnelle. Analyse num{\\'e}rique},\n" 145f0b18bfSMatthew G. Knepley " volume = {9},\n" 155f0b18bfSMatthew G. Knepley " number = {R2},\n" 165f0b18bfSMatthew G. Knepley " pages = {77--84},\n" 175f0b18bfSMatthew G. Knepley " year = {1975}\n}\n"; 185f0b18bfSMatthew G. Knepley 19d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexConvertPlex(DM dm, DM *plex, PetscBool copy) 20d71ae5a4SJacob Faibussowitsch { 212f856554SMatthew G. Knepley PetscBool isPlex; 222f856554SMatthew G. Knepley 232f856554SMatthew G. Knepley PetscFunctionBegin; 249566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)dm, DMPLEX, &isPlex)); 252f856554SMatthew G. Knepley if (isPlex) { 262f856554SMatthew G. Knepley *plex = dm; 279566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)dm)); 282f856554SMatthew G. Knepley } else { 299566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)dm, "dm_plex", (PetscObject *)plex)); 302f856554SMatthew G. Knepley if (!*plex) { 319566063dSJacob Faibussowitsch PetscCall(DMConvert(dm, DMPLEX, plex)); 329566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)dm, "dm_plex", (PetscObject)*plex)); 332f856554SMatthew G. Knepley if (copy) { 342f856554SMatthew G. Knepley DMSubDomainHookLink link; 359a2a23afSMatthew G. Knepley 369566063dSJacob Faibussowitsch PetscCall(DMCopyAuxiliaryVec(dm, *plex)); 379a2a23afSMatthew G. Knepley /* Run the subdomain hook (this will copy the DMSNES/DMTS) */ 382f856554SMatthew G. Knepley for (link = dm->subdomainhook; link; link = link->next) { 399566063dSJacob Faibussowitsch if (link->ddhook) PetscCall((*link->ddhook)(dm, *plex, link->ctx)); 402f856554SMatthew G. Knepley } 412f856554SMatthew G. Knepley } 422f856554SMatthew G. Knepley } else { 439566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)*plex)); 442f856554SMatthew G. Knepley } 452f856554SMatthew G. Knepley } 463ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 472f856554SMatthew G. Knepley } 482f856554SMatthew G. Knepley 49d71ae5a4SJacob Faibussowitsch static PetscErrorCode PetscContainerUserDestroy_PetscFEGeom(void *ctx) 50d71ae5a4SJacob Faibussowitsch { 519b6f715bSMatthew G. Knepley PetscFEGeom *geom = (PetscFEGeom *)ctx; 529b6f715bSMatthew G. Knepley 539b6f715bSMatthew G. Knepley PetscFunctionBegin; 549566063dSJacob Faibussowitsch PetscCall(PetscFEGeomDestroy(&geom)); 553ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 569b6f715bSMatthew G. Knepley } 579b6f715bSMatthew G. Knepley 58d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexGetFEGeom(DMField coordField, IS pointIS, PetscQuadrature quad, PetscBool faceData, PetscFEGeom **geom) 59d71ae5a4SJacob Faibussowitsch { 609b6f715bSMatthew G. Knepley char composeStr[33] = {0}; 619b6f715bSMatthew G. Knepley PetscObjectId id; 629b6f715bSMatthew G. Knepley PetscContainer container; 639b6f715bSMatthew G. Knepley 649b6f715bSMatthew G. Knepley PetscFunctionBegin; 659566063dSJacob Faibussowitsch PetscCall(PetscObjectGetId((PetscObject)quad, &id)); 6663a3b9bcSJacob Faibussowitsch PetscCall(PetscSNPrintf(composeStr, 32, "DMPlexGetFEGeom_%" PetscInt64_FMT "\n", id)); 679566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)pointIS, composeStr, (PetscObject *)&container)); 689b6f715bSMatthew G. Knepley if (container) { 699566063dSJacob Faibussowitsch PetscCall(PetscContainerGetPointer(container, (void **)geom)); 709b6f715bSMatthew G. Knepley } else { 719566063dSJacob Faibussowitsch PetscCall(DMFieldCreateFEGeom(coordField, pointIS, quad, faceData, geom)); 729566063dSJacob Faibussowitsch PetscCall(PetscContainerCreate(PETSC_COMM_SELF, &container)); 739566063dSJacob Faibussowitsch PetscCall(PetscContainerSetPointer(container, (void *)*geom)); 749566063dSJacob Faibussowitsch PetscCall(PetscContainerSetUserDestroy(container, PetscContainerUserDestroy_PetscFEGeom)); 759566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)pointIS, composeStr, (PetscObject)container)); 769566063dSJacob Faibussowitsch PetscCall(PetscContainerDestroy(&container)); 779b6f715bSMatthew G. Knepley } 783ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 799b6f715bSMatthew G. Knepley } 809b6f715bSMatthew G. Knepley 81d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexRestoreFEGeom(DMField coordField, IS pointIS, PetscQuadrature quad, PetscBool faceData, PetscFEGeom **geom) 82d71ae5a4SJacob Faibussowitsch { 839b6f715bSMatthew G. Knepley PetscFunctionBegin; 849b6f715bSMatthew G. Knepley *geom = NULL; 853ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 869b6f715bSMatthew G. Knepley } 879b6f715bSMatthew G. Knepley 8846fa42a0SMatthew G. Knepley /*@ 8946fa42a0SMatthew G. Knepley DMPlexGetScale - Get the scale for the specified fundamental unit 9046fa42a0SMatthew G. Knepley 9120f4b53cSBarry Smith Not Collective 9246fa42a0SMatthew G. Knepley 934165533cSJose E. Roman Input Parameters: 94a1cb98faSBarry Smith + dm - the `DM` 9546fa42a0SMatthew G. Knepley - unit - The SI unit 9646fa42a0SMatthew G. Knepley 974165533cSJose E. Roman Output Parameter: 9846fa42a0SMatthew G. Knepley . scale - The value used to scale all quantities with this unit 9946fa42a0SMatthew G. Knepley 10046fa42a0SMatthew G. Knepley Level: advanced 10146fa42a0SMatthew G. Knepley 1021cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexSetScale()`, `PetscUnit` 10346fa42a0SMatthew G. Knepley @*/ 104d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexGetScale(DM dm, PetscUnit unit, PetscReal *scale) 105d71ae5a4SJacob Faibussowitsch { 106cb1e1211SMatthew G Knepley DM_Plex *mesh = (DM_Plex *)dm->data; 107cb1e1211SMatthew G Knepley 108cb1e1211SMatthew G Knepley PetscFunctionBegin; 109cb1e1211SMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 1104f572ea9SToby Isaac PetscAssertPointer(scale, 3); 111cb1e1211SMatthew G Knepley *scale = mesh->scale[unit]; 1123ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 113cb1e1211SMatthew G Knepley } 114cb1e1211SMatthew G Knepley 11546fa42a0SMatthew G. Knepley /*@ 11646fa42a0SMatthew G. Knepley DMPlexSetScale - Set the scale for the specified fundamental unit 11746fa42a0SMatthew G. Knepley 11820f4b53cSBarry Smith Not Collective 11946fa42a0SMatthew G. Knepley 1204165533cSJose E. Roman Input Parameters: 121a1cb98faSBarry Smith + dm - the `DM` 12246fa42a0SMatthew G. Knepley . unit - The SI unit 12346fa42a0SMatthew G. Knepley - scale - The value used to scale all quantities with this unit 12446fa42a0SMatthew G. Knepley 12546fa42a0SMatthew G. Knepley Level: advanced 12646fa42a0SMatthew G. Knepley 1271cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexGetScale()`, `PetscUnit` 12846fa42a0SMatthew G. Knepley @*/ 129d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexSetScale(DM dm, PetscUnit unit, PetscReal scale) 130d71ae5a4SJacob Faibussowitsch { 131cb1e1211SMatthew G Knepley DM_Plex *mesh = (DM_Plex *)dm->data; 132cb1e1211SMatthew G Knepley 133cb1e1211SMatthew G Knepley PetscFunctionBegin; 134cb1e1211SMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 135cb1e1211SMatthew G Knepley mesh->scale[unit] = scale; 1363ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 137cb1e1211SMatthew G Knepley } 138cb1e1211SMatthew G Knepley 139d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexProjectRigidBody_Private(PetscInt dim, PetscReal t, const PetscReal X[], PetscInt Nc, PetscScalar *mode, void *ctx) 140d71ae5a4SJacob Faibussowitsch { 1419371c9d4SSatish Balay const PetscInt eps[3][3][3] = { 1429371c9d4SSatish Balay {{0, 0, 0}, {0, 0, 1}, {0, -1, 0}}, 1439371c9d4SSatish Balay {{0, 0, -1}, {0, 0, 0}, {1, 0, 0} }, 1449371c9d4SSatish Balay {{0, 1, 0}, {-1, 0, 0}, {0, 0, 0} } 1459371c9d4SSatish Balay }; 146026175e5SToby Isaac PetscInt *ctxInt = (PetscInt *)ctx; 147ad917190SMatthew G. Knepley PetscInt dim2 = ctxInt[0]; 148026175e5SToby Isaac PetscInt d = ctxInt[1]; 149026175e5SToby Isaac PetscInt i, j, k = dim > 2 ? d - dim : d; 150026175e5SToby Isaac 151ad917190SMatthew G. Knepley PetscFunctionBegin; 15263a3b9bcSJacob Faibussowitsch PetscCheck(dim == dim2, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Input dimension %" PetscInt_FMT " does not match context dimension %" PetscInt_FMT, dim, dim2); 153026175e5SToby Isaac for (i = 0; i < dim; i++) mode[i] = 0.; 154026175e5SToby Isaac if (d < dim) { 15512adca46SMatthew G. Knepley mode[d] = 1.; /* Translation along axis d */ 156ad917190SMatthew G. Knepley } else { 157026175e5SToby Isaac for (i = 0; i < dim; i++) { 1589371c9d4SSatish Balay for (j = 0; j < dim; j++) { mode[j] += eps[i][j][k] * X[i]; /* Rotation about axis d */ } 159026175e5SToby Isaac } 160026175e5SToby Isaac } 1613ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 162026175e5SToby Isaac } 163026175e5SToby Isaac 164cc4e42d9SMartin Diehl /*@ 16512adca46SMatthew G. Knepley DMPlexCreateRigidBody - For the default global section, create rigid body modes by function space interpolation 166cb1e1211SMatthew G Knepley 16720f4b53cSBarry Smith Collective 168cb1e1211SMatthew G Knepley 1694165533cSJose E. Roman Input Parameters: 170a1cb98faSBarry Smith + dm - the `DM` 17156cf3b9cSMatthew G. Knepley - field - The field number for the rigid body space, or 0 for the default 172cb1e1211SMatthew G Knepley 1734165533cSJose E. Roman Output Parameter: 174cb1e1211SMatthew G Knepley . sp - the null space 175cb1e1211SMatthew G Knepley 176cb1e1211SMatthew G Knepley Level: advanced 177cb1e1211SMatthew G Knepley 178a1cb98faSBarry Smith Note: 179a1cb98faSBarry Smith This is necessary to provide a suitable coarse space for algebraic multigrid 180a1cb98faSBarry Smith 1811cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `MatNullSpaceCreate()`, `PCGAMG` 182cb1e1211SMatthew G Knepley @*/ 183d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexCreateRigidBody(DM dm, PetscInt field, MatNullSpace *sp) 184d71ae5a4SJacob Faibussowitsch { 18556cf3b9cSMatthew G. Knepley PetscErrorCode (**func)(PetscInt, PetscReal, const PetscReal *, PetscInt, PetscScalar *, void *); 186cb1e1211SMatthew G Knepley MPI_Comm comm; 187026175e5SToby Isaac Vec mode[6]; 188026175e5SToby Isaac PetscSection section, globalSection; 18956cf3b9cSMatthew G. Knepley PetscInt dim, dimEmbed, Nf, n, m, mmin, d, i, j; 190db14aad5SMatthew G. Knepley void **ctxs; 191cb1e1211SMatthew G Knepley 192cb1e1211SMatthew G Knepley PetscFunctionBegin; 1939566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)dm, &comm)); 1949566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 1959566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDim(dm, &dimEmbed)); 1969566063dSJacob Faibussowitsch PetscCall(DMGetNumFields(dm, &Nf)); 19763a3b9bcSJacob Faibussowitsch PetscCheck(!Nf || !(field < 0 || field >= Nf), comm, PETSC_ERR_ARG_OUTOFRANGE, "Field %" PetscInt_FMT " is not in [0, %" PetscInt_FMT ")", field, Nf); 19856cf3b9cSMatthew G. Knepley if (dim == 1 && Nf < 2) { 1999566063dSJacob Faibussowitsch PetscCall(MatNullSpaceCreate(comm, PETSC_TRUE, 0, NULL, sp)); 2003ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 201cb1e1211SMatthew G Knepley } 2029566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, §ion)); 2039566063dSJacob Faibussowitsch PetscCall(DMGetGlobalSection(dm, &globalSection)); 2049566063dSJacob Faibussowitsch PetscCall(PetscSectionGetConstrainedStorageSize(globalSection, &n)); 205db14aad5SMatthew G. Knepley PetscCall(PetscCalloc2(Nf, &func, Nf, &ctxs)); 206b247467aSMatthew G. Knepley m = (dim * (dim + 1)) / 2; 2079566063dSJacob Faibussowitsch PetscCall(VecCreate(comm, &mode[0])); 2089566063dSJacob Faibussowitsch PetscCall(VecSetType(mode[0], dm->vectype)); 2099566063dSJacob Faibussowitsch PetscCall(VecSetSizes(mode[0], n, PETSC_DETERMINE)); 2109566063dSJacob Faibussowitsch PetscCall(VecSetUp(mode[0])); 2119566063dSJacob Faibussowitsch PetscCall(VecGetSize(mode[0], &n)); 212b247467aSMatthew G. Knepley mmin = PetscMin(m, n); 21356cf3b9cSMatthew G. Knepley func[field] = DMPlexProjectRigidBody_Private; 2149566063dSJacob Faibussowitsch for (i = 1; i < m; ++i) PetscCall(VecDuplicate(mode[0], &mode[i])); 215026175e5SToby Isaac for (d = 0; d < m; d++) { 216330485fdSToby Isaac PetscInt ctx[2]; 217cb1e1211SMatthew G Knepley 218db14aad5SMatthew G. Knepley ctxs[field] = (void *)(&ctx[0]); 2199d8fbdeaSMatthew G. Knepley ctx[0] = dimEmbed; 220330485fdSToby Isaac ctx[1] = d; 221db14aad5SMatthew G. Knepley PetscCall(DMProjectFunction(dm, 0.0, func, ctxs, INSERT_VALUES, mode[d])); 222cb1e1211SMatthew G Knepley } 2233b2202bfSJacob Faibussowitsch /* Orthonormalize system */ 224b50a2c0aSJacob Faibussowitsch for (i = 0; i < mmin; ++i) { 225b77f2eeeSJacob Faibussowitsch PetscScalar dots[6]; 226b50a2c0aSJacob Faibussowitsch 2279566063dSJacob Faibussowitsch PetscCall(VecNormalize(mode[i], NULL)); 2289566063dSJacob Faibussowitsch PetscCall(VecMDot(mode[i], mmin - i - 1, mode + i + 1, dots + i + 1)); 229b50a2c0aSJacob Faibussowitsch for (j = i + 1; j < mmin; ++j) { 230b77f2eeeSJacob Faibussowitsch dots[j] *= -1.0; 2319566063dSJacob Faibussowitsch PetscCall(VecAXPY(mode[j], dots[j], mode[i])); 232b50a2c0aSJacob Faibussowitsch } 233cb1e1211SMatthew G Knepley } 2349566063dSJacob Faibussowitsch PetscCall(MatNullSpaceCreate(comm, PETSC_FALSE, mmin, mode, sp)); 2359566063dSJacob Faibussowitsch for (i = 0; i < m; ++i) PetscCall(VecDestroy(&mode[i])); 236db14aad5SMatthew G. Knepley PetscCall(PetscFree2(func, ctxs)); 2373ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 238cb1e1211SMatthew G Knepley } 239cb1e1211SMatthew G Knepley 240cc4e42d9SMartin Diehl /*@ 24112adca46SMatthew G. Knepley DMPlexCreateRigidBodies - For the default global section, create rigid body modes by function space interpolation 24212adca46SMatthew G. Knepley 24320f4b53cSBarry Smith Collective 24412adca46SMatthew G. Knepley 2454165533cSJose E. Roman Input Parameters: 246a1cb98faSBarry Smith + dm - the `DM` 24712adca46SMatthew G. Knepley . nb - The number of bodies 248a1cb98faSBarry Smith . label - The `DMLabel` marking each domain 24912adca46SMatthew G. Knepley . nids - The number of ids per body 25012adca46SMatthew G. Knepley - ids - An array of the label ids in sequence for each domain 25112adca46SMatthew G. Knepley 2524165533cSJose E. Roman Output Parameter: 25312adca46SMatthew G. Knepley . sp - the null space 25412adca46SMatthew G. Knepley 25512adca46SMatthew G. Knepley Level: advanced 25612adca46SMatthew G. Knepley 257a1cb98faSBarry Smith Note: 258a1cb98faSBarry Smith This is necessary to provide a suitable coarse space for algebraic multigrid 259a1cb98faSBarry Smith 2601cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `MatNullSpaceCreate()` 26112adca46SMatthew G. Knepley @*/ 262d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexCreateRigidBodies(DM dm, PetscInt nb, DMLabel label, const PetscInt nids[], const PetscInt ids[], MatNullSpace *sp) 263d71ae5a4SJacob Faibussowitsch { 26412adca46SMatthew G. Knepley MPI_Comm comm; 26512adca46SMatthew G. Knepley PetscSection section, globalSection; 26612adca46SMatthew G. Knepley Vec *mode; 26712adca46SMatthew G. Knepley PetscScalar *dots; 26812adca46SMatthew G. Knepley PetscInt dim, dimEmbed, n, m, b, d, i, j, off; 26912adca46SMatthew G. Knepley 27012adca46SMatthew G. Knepley PetscFunctionBegin; 2719566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)dm, &comm)); 2729566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 2739566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDim(dm, &dimEmbed)); 2749566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, §ion)); 2759566063dSJacob Faibussowitsch PetscCall(DMGetGlobalSection(dm, &globalSection)); 2769566063dSJacob Faibussowitsch PetscCall(PetscSectionGetConstrainedStorageSize(globalSection, &n)); 27712adca46SMatthew G. Knepley m = nb * (dim * (dim + 1)) / 2; 2789566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(m, &mode, m, &dots)); 2799566063dSJacob Faibussowitsch PetscCall(VecCreate(comm, &mode[0])); 2809566063dSJacob Faibussowitsch PetscCall(VecSetSizes(mode[0], n, PETSC_DETERMINE)); 2819566063dSJacob Faibussowitsch PetscCall(VecSetUp(mode[0])); 2829566063dSJacob Faibussowitsch for (i = 1; i < m; ++i) PetscCall(VecDuplicate(mode[0], &mode[i])); 28312adca46SMatthew G. Knepley for (b = 0, off = 0; b < nb; ++b) { 28412adca46SMatthew G. Knepley for (d = 0; d < m / nb; ++d) { 28512adca46SMatthew G. Knepley PetscInt ctx[2]; 28612adca46SMatthew G. Knepley PetscErrorCode (*func)(PetscInt, PetscReal, const PetscReal *, PetscInt, PetscScalar *, void *) = DMPlexProjectRigidBody_Private; 28712adca46SMatthew G. Knepley void *voidctx = (void *)(&ctx[0]); 28812adca46SMatthew G. Knepley 28912adca46SMatthew G. Knepley ctx[0] = dimEmbed; 29012adca46SMatthew G. Knepley ctx[1] = d; 2919566063dSJacob Faibussowitsch PetscCall(DMProjectFunctionLabel(dm, 0.0, label, nids[b], &ids[off], 0, NULL, &func, &voidctx, INSERT_VALUES, mode[d])); 29212adca46SMatthew G. Knepley off += nids[b]; 29312adca46SMatthew G. Knepley } 29412adca46SMatthew G. Knepley } 2953b2202bfSJacob Faibussowitsch /* Orthonormalize system */ 296606c1a1cSJacob Faibussowitsch for (i = 0; i < m; ++i) { 297b77f2eeeSJacob Faibussowitsch PetscScalar dots[6]; 2985a0e29b9SJacob Faibussowitsch 2999566063dSJacob Faibussowitsch PetscCall(VecNormalize(mode[i], NULL)); 3009566063dSJacob Faibussowitsch PetscCall(VecMDot(mode[i], m - i - 1, mode + i + 1, dots + i + 1)); 3015a0e29b9SJacob Faibussowitsch for (j = i + 1; j < m; ++j) { 302b77f2eeeSJacob Faibussowitsch dots[j] *= -1.0; 3039566063dSJacob Faibussowitsch PetscCall(VecAXPY(mode[j], dots[j], mode[i])); 3045a0e29b9SJacob Faibussowitsch } 30512adca46SMatthew G. Knepley } 3069566063dSJacob Faibussowitsch PetscCall(MatNullSpaceCreate(comm, PETSC_FALSE, m, mode, sp)); 3079566063dSJacob Faibussowitsch for (i = 0; i < m; ++i) PetscCall(VecDestroy(&mode[i])); 3089566063dSJacob Faibussowitsch PetscCall(PetscFree2(mode, dots)); 3093ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 31012adca46SMatthew G. Knepley } 31112adca46SMatthew G. Knepley 312b29cfa1cSToby Isaac /*@ 313b29cfa1cSToby Isaac DMPlexSetMaxProjectionHeight - In DMPlexProjectXXXLocal() functions, the projected values of a basis function's dofs 314b29cfa1cSToby Isaac are computed by associating the basis function with one of the mesh points in its transitively-closed support, and 315*a4e35b19SJacob Faibussowitsch evaluating the dual space basis of that point. 316b29cfa1cSToby Isaac 317b29cfa1cSToby Isaac Input Parameters: 318a1cb98faSBarry Smith + dm - the `DMPLEX` object 319b29cfa1cSToby Isaac - height - the maximum projection height >= 0 320b29cfa1cSToby Isaac 321b29cfa1cSToby Isaac Level: advanced 322b29cfa1cSToby Isaac 323*a4e35b19SJacob Faibussowitsch Notes: 324*a4e35b19SJacob Faibussowitsch A basis function is associated with the point in its transitively-closed support whose mesh 325*a4e35b19SJacob Faibussowitsch height is highest (w.r.t. DAG height), but not greater than the maximum projection height, 326*a4e35b19SJacob Faibussowitsch which is set with this function. By default, the maximum projection height is zero, which 327*a4e35b19SJacob Faibussowitsch means that only mesh cells are used to project basis functions. A height of one, for 328*a4e35b19SJacob Faibussowitsch example, evaluates a cell-interior basis functions using its cells dual space basis, but all 329*a4e35b19SJacob Faibussowitsch other basis functions with the dual space basis of a face. 330*a4e35b19SJacob Faibussowitsch 3311cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexGetMaxProjectionHeight()`, `DMProjectFunctionLocal()`, `DMProjectFunctionLabelLocal()` 332b29cfa1cSToby Isaac @*/ 333d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexSetMaxProjectionHeight(DM dm, PetscInt height) 334d71ae5a4SJacob Faibussowitsch { 335b29cfa1cSToby Isaac DM_Plex *plex = (DM_Plex *)dm->data; 336b29cfa1cSToby Isaac 337b29cfa1cSToby Isaac PetscFunctionBegin; 338b29cfa1cSToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 339b29cfa1cSToby Isaac plex->maxProjectionHeight = height; 3403ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 341b29cfa1cSToby Isaac } 342b29cfa1cSToby Isaac 343b29cfa1cSToby Isaac /*@ 344b29cfa1cSToby Isaac DMPlexGetMaxProjectionHeight - Get the maximum height (w.r.t. DAG) of mesh points used to evaluate dual bases in 345b29cfa1cSToby Isaac DMPlexProjectXXXLocal() functions. 346b29cfa1cSToby Isaac 3472fe279fdSBarry Smith Input Parameter: 348a1cb98faSBarry Smith . dm - the `DMPLEX` object 349b29cfa1cSToby Isaac 3502fe279fdSBarry Smith Output Parameter: 351b29cfa1cSToby Isaac . height - the maximum projection height 352b29cfa1cSToby Isaac 353b29cfa1cSToby Isaac Level: intermediate 354b29cfa1cSToby Isaac 3551cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexSetMaxProjectionHeight()`, `DMProjectFunctionLocal()`, `DMProjectFunctionLabelLocal()` 356b29cfa1cSToby Isaac @*/ 357d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexGetMaxProjectionHeight(DM dm, PetscInt *height) 358d71ae5a4SJacob Faibussowitsch { 359b29cfa1cSToby Isaac DM_Plex *plex = (DM_Plex *)dm->data; 360b29cfa1cSToby Isaac 361b29cfa1cSToby Isaac PetscFunctionBegin; 362b29cfa1cSToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 363b29cfa1cSToby Isaac *height = plex->maxProjectionHeight; 3643ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 365b29cfa1cSToby Isaac } 366b29cfa1cSToby Isaac 367ca3d3a14SMatthew G. Knepley typedef struct { 368ca3d3a14SMatthew G. Knepley PetscReal alpha; /* The first Euler angle, and in 2D the only one */ 369ca3d3a14SMatthew G. Knepley PetscReal beta; /* The second Euler angle */ 370ca3d3a14SMatthew G. Knepley PetscReal gamma; /* The third Euler angle */ 371ca3d3a14SMatthew G. Knepley PetscInt dim; /* The dimension of R */ 372ca3d3a14SMatthew G. Knepley PetscScalar *R; /* The rotation matrix, transforming a vector in the local basis to the global basis */ 373ca3d3a14SMatthew G. Knepley PetscScalar *RT; /* The transposed rotation matrix, transforming a vector in the global basis to the local basis */ 374ca3d3a14SMatthew G. Knepley } RotCtx; 375ca3d3a14SMatthew G. Knepley 376ca3d3a14SMatthew G. Knepley /* 377ca3d3a14SMatthew G. Knepley Note: Following https://en.wikipedia.org/wiki/Euler_angles, we will specify Euler angles by extrinsic rotations, meaning that 378ca3d3a14SMatthew G. Knepley we rotate with respect to a fixed initial coordinate system, the local basis (x-y-z). The global basis (X-Y-Z) is reached as follows: 379ca3d3a14SMatthew G. Knepley $ The XYZ system rotates about the z axis by alpha. The X axis is now at angle alpha with respect to the x axis. 380ca3d3a14SMatthew G. Knepley $ The XYZ system rotates again about the x axis by beta. The Z axis is now at angle beta with respect to the z axis. 381ca3d3a14SMatthew G. Knepley $ The XYZ system rotates a third time about the z axis by gamma. 382ca3d3a14SMatthew G. Knepley */ 383d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexBasisTransformSetUp_Rotation_Internal(DM dm, void *ctx) 384d71ae5a4SJacob Faibussowitsch { 385ca3d3a14SMatthew G. Knepley RotCtx *rc = (RotCtx *)ctx; 386ca3d3a14SMatthew G. Knepley PetscInt dim = rc->dim; 387ca3d3a14SMatthew G. Knepley PetscReal c1, s1, c2, s2, c3, s3; 388ca3d3a14SMatthew G. Knepley 389ca3d3a14SMatthew G. Knepley PetscFunctionBegin; 3909566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(PetscSqr(dim), &rc->R, PetscSqr(dim), &rc->RT)); 391ca3d3a14SMatthew G. Knepley switch (dim) { 392ca3d3a14SMatthew G. Knepley case 2: 3939371c9d4SSatish Balay c1 = PetscCosReal(rc->alpha); 3949371c9d4SSatish Balay s1 = PetscSinReal(rc->alpha); 3959371c9d4SSatish Balay rc->R[0] = c1; 3969371c9d4SSatish Balay rc->R[1] = s1; 3979371c9d4SSatish Balay rc->R[2] = -s1; 3989371c9d4SSatish Balay rc->R[3] = c1; 3999566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(rc->RT, rc->R, PetscSqr(dim))); 400b458e8f1SJose E. Roman DMPlex_Transpose2D_Internal(rc->RT); 401ca3d3a14SMatthew G. Knepley break; 402ca3d3a14SMatthew G. Knepley case 3: 4039371c9d4SSatish Balay c1 = PetscCosReal(rc->alpha); 4049371c9d4SSatish Balay s1 = PetscSinReal(rc->alpha); 4059371c9d4SSatish Balay c2 = PetscCosReal(rc->beta); 4069371c9d4SSatish Balay s2 = PetscSinReal(rc->beta); 4079371c9d4SSatish Balay c3 = PetscCosReal(rc->gamma); 4089371c9d4SSatish Balay s3 = PetscSinReal(rc->gamma); 4099371c9d4SSatish Balay rc->R[0] = c1 * c3 - c2 * s1 * s3; 4109371c9d4SSatish Balay rc->R[1] = c3 * s1 + c1 * c2 * s3; 4119371c9d4SSatish Balay rc->R[2] = s2 * s3; 4129371c9d4SSatish Balay rc->R[3] = -c1 * s3 - c2 * c3 * s1; 4139371c9d4SSatish Balay rc->R[4] = c1 * c2 * c3 - s1 * s3; 4149371c9d4SSatish Balay rc->R[5] = c3 * s2; 4159371c9d4SSatish Balay rc->R[6] = s1 * s2; 4169371c9d4SSatish Balay rc->R[7] = -c1 * s2; 4179371c9d4SSatish Balay rc->R[8] = c2; 4189566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(rc->RT, rc->R, PetscSqr(dim))); 419b458e8f1SJose E. Roman DMPlex_Transpose3D_Internal(rc->RT); 420ca3d3a14SMatthew G. Knepley break; 421d71ae5a4SJacob Faibussowitsch default: 422d71ae5a4SJacob Faibussowitsch SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Dimension %" PetscInt_FMT " not supported", dim); 423ca3d3a14SMatthew G. Knepley } 4243ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 425ca3d3a14SMatthew G. Knepley } 426ca3d3a14SMatthew G. Knepley 427d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexBasisTransformDestroy_Rotation_Internal(DM dm, void *ctx) 428d71ae5a4SJacob Faibussowitsch { 429ca3d3a14SMatthew G. Knepley RotCtx *rc = (RotCtx *)ctx; 430ca3d3a14SMatthew G. Knepley 431ca3d3a14SMatthew G. Knepley PetscFunctionBegin; 4329566063dSJacob Faibussowitsch PetscCall(PetscFree2(rc->R, rc->RT)); 4339566063dSJacob Faibussowitsch PetscCall(PetscFree(rc)); 4343ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 435ca3d3a14SMatthew G. Knepley } 436ca3d3a14SMatthew G. Knepley 437d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexBasisTransformGetMatrix_Rotation_Internal(DM dm, const PetscReal x[], PetscBool l2g, const PetscScalar **A, void *ctx) 438d71ae5a4SJacob Faibussowitsch { 439ca3d3a14SMatthew G. Knepley RotCtx *rc = (RotCtx *)ctx; 440ca3d3a14SMatthew G. Knepley 441ca3d3a14SMatthew G. Knepley PetscFunctionBeginHot; 4424f572ea9SToby Isaac PetscAssertPointer(ctx, 5); 4439371c9d4SSatish Balay if (l2g) { 4449371c9d4SSatish Balay *A = rc->R; 4459371c9d4SSatish Balay } else { 4469371c9d4SSatish Balay *A = rc->RT; 4479371c9d4SSatish Balay } 4483ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 449ca3d3a14SMatthew G. Knepley } 450ca3d3a14SMatthew G. Knepley 451d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexBasisTransformApplyReal_Internal(DM dm, const PetscReal x[], PetscBool l2g, PetscInt dim, const PetscReal *y, PetscReal *z, void *ctx) 452d71ae5a4SJacob Faibussowitsch { 453ec277c0fSMatthew G. Knepley PetscFunctionBegin; 454ab6a9622SMatthew G. Knepley #if defined(PETSC_USE_COMPLEX) 455ab6a9622SMatthew G. Knepley switch (dim) { 4569371c9d4SSatish Balay case 2: { 45727104ee2SJacob Faibussowitsch PetscScalar yt[2] = {y[0], y[1]}, zt[2] = {0.0, 0.0}; 458ab6a9622SMatthew G. Knepley 4599566063dSJacob Faibussowitsch PetscCall(DMPlexBasisTransformApply_Internal(dm, x, l2g, dim, yt, zt, ctx)); 4609371c9d4SSatish Balay z[0] = PetscRealPart(zt[0]); 4619371c9d4SSatish Balay z[1] = PetscRealPart(zt[1]); 4629371c9d4SSatish Balay } break; 4639371c9d4SSatish Balay case 3: { 46427104ee2SJacob Faibussowitsch PetscScalar yt[3] = {y[0], y[1], y[2]}, zt[3] = {0.0, 0.0, 0.0}; 465ab6a9622SMatthew G. Knepley 4669566063dSJacob Faibussowitsch PetscCall(DMPlexBasisTransformApply_Internal(dm, x, l2g, dim, yt, zt, ctx)); 4679371c9d4SSatish Balay z[0] = PetscRealPart(zt[0]); 4689371c9d4SSatish Balay z[1] = PetscRealPart(zt[1]); 4699371c9d4SSatish Balay z[2] = PetscRealPart(zt[2]); 4709371c9d4SSatish Balay } break; 471ab6a9622SMatthew G. Knepley } 472ab6a9622SMatthew G. Knepley #else 4739566063dSJacob Faibussowitsch PetscCall(DMPlexBasisTransformApply_Internal(dm, x, l2g, dim, y, z, ctx)); 474ab6a9622SMatthew G. Knepley #endif 4753ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 476ab6a9622SMatthew G. Knepley } 477ab6a9622SMatthew G. Knepley 478d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexBasisTransformApply_Internal(DM dm, const PetscReal x[], PetscBool l2g, PetscInt dim, const PetscScalar *y, PetscScalar *z, void *ctx) 479d71ae5a4SJacob Faibussowitsch { 480ca3d3a14SMatthew G. Knepley const PetscScalar *A; 481ca3d3a14SMatthew G. Knepley 482ca3d3a14SMatthew G. Knepley PetscFunctionBeginHot; 4839566063dSJacob Faibussowitsch PetscCall((*dm->transformGetMatrix)(dm, x, l2g, &A, ctx)); 484ca3d3a14SMatthew G. Knepley switch (dim) { 485d71ae5a4SJacob Faibussowitsch case 2: 486d71ae5a4SJacob Faibussowitsch DMPlex_Mult2D_Internal(A, 1, y, z); 487d71ae5a4SJacob Faibussowitsch break; 488d71ae5a4SJacob Faibussowitsch case 3: 489d71ae5a4SJacob Faibussowitsch DMPlex_Mult3D_Internal(A, 1, y, z); 490d71ae5a4SJacob Faibussowitsch break; 491ca3d3a14SMatthew G. Knepley } 4923ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 493ca3d3a14SMatthew G. Knepley } 494ca3d3a14SMatthew G. Knepley 495d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexBasisTransformField_Internal(DM dm, DM tdm, Vec tv, PetscInt p, PetscInt f, PetscBool l2g, PetscScalar *a) 496d71ae5a4SJacob Faibussowitsch { 497ca3d3a14SMatthew G. Knepley PetscSection ts; 498ca3d3a14SMatthew G. Knepley const PetscScalar *ta, *tva; 499ca3d3a14SMatthew G. Knepley PetscInt dof; 500ca3d3a14SMatthew G. Knepley 501ca3d3a14SMatthew G. Knepley PetscFunctionBeginHot; 5029566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(tdm, &ts)); 5039566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldDof(ts, p, f, &dof)); 5049566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(tv, &ta)); 5059566063dSJacob Faibussowitsch PetscCall(DMPlexPointLocalFieldRead(tdm, p, f, ta, &tva)); 506ca3d3a14SMatthew G. Knepley if (l2g) { 507ca3d3a14SMatthew G. Knepley switch (dof) { 508d71ae5a4SJacob Faibussowitsch case 4: 509d71ae5a4SJacob Faibussowitsch DMPlex_Mult2D_Internal(tva, 1, a, a); 510d71ae5a4SJacob Faibussowitsch break; 511d71ae5a4SJacob Faibussowitsch case 9: 512d71ae5a4SJacob Faibussowitsch DMPlex_Mult3D_Internal(tva, 1, a, a); 513d71ae5a4SJacob Faibussowitsch break; 514ca3d3a14SMatthew G. Knepley } 515ca3d3a14SMatthew G. Knepley } else { 516ca3d3a14SMatthew G. Knepley switch (dof) { 517d71ae5a4SJacob Faibussowitsch case 4: 518d71ae5a4SJacob Faibussowitsch DMPlex_MultTranspose2D_Internal(tva, 1, a, a); 519d71ae5a4SJacob Faibussowitsch break; 520d71ae5a4SJacob Faibussowitsch case 9: 521d71ae5a4SJacob Faibussowitsch DMPlex_MultTranspose3D_Internal(tva, 1, a, a); 522d71ae5a4SJacob Faibussowitsch break; 523ca3d3a14SMatthew G. Knepley } 524ca3d3a14SMatthew G. Knepley } 5259566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(tv, &ta)); 5263ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 527ca3d3a14SMatthew G. Knepley } 528ca3d3a14SMatthew G. Knepley 529d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexBasisTransformFieldTensor_Internal(DM dm, DM tdm, Vec tv, PetscInt pf, PetscInt f, PetscInt pg, PetscInt g, PetscBool l2g, PetscInt lda, PetscScalar *a) 530d71ae5a4SJacob Faibussowitsch { 531ca3d3a14SMatthew G. Knepley PetscSection s, ts; 532ca3d3a14SMatthew G. Knepley const PetscScalar *ta, *tvaf, *tvag; 533ca3d3a14SMatthew G. Knepley PetscInt fdof, gdof, fpdof, gpdof; 534ca3d3a14SMatthew G. Knepley 535ca3d3a14SMatthew G. Knepley PetscFunctionBeginHot; 5369566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, &s)); 5379566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(tdm, &ts)); 5389566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldDof(s, pf, f, &fpdof)); 5399566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldDof(s, pg, g, &gpdof)); 5409566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldDof(ts, pf, f, &fdof)); 5419566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldDof(ts, pg, g, &gdof)); 5429566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(tv, &ta)); 5439566063dSJacob Faibussowitsch PetscCall(DMPlexPointLocalFieldRead(tdm, pf, f, ta, &tvaf)); 5449566063dSJacob Faibussowitsch PetscCall(DMPlexPointLocalFieldRead(tdm, pg, g, ta, &tvag)); 545ca3d3a14SMatthew G. Knepley if (l2g) { 546ca3d3a14SMatthew G. Knepley switch (fdof) { 547d71ae5a4SJacob Faibussowitsch case 4: 548d71ae5a4SJacob Faibussowitsch DMPlex_MatMult2D_Internal(tvaf, gpdof, lda, a, a); 549d71ae5a4SJacob Faibussowitsch break; 550d71ae5a4SJacob Faibussowitsch case 9: 551d71ae5a4SJacob Faibussowitsch DMPlex_MatMult3D_Internal(tvaf, gpdof, lda, a, a); 552d71ae5a4SJacob Faibussowitsch break; 553ca3d3a14SMatthew G. Knepley } 554ca3d3a14SMatthew G. Knepley switch (gdof) { 555d71ae5a4SJacob Faibussowitsch case 4: 556d71ae5a4SJacob Faibussowitsch DMPlex_MatMultTransposeLeft2D_Internal(tvag, fpdof, lda, a, a); 557d71ae5a4SJacob Faibussowitsch break; 558d71ae5a4SJacob Faibussowitsch case 9: 559d71ae5a4SJacob Faibussowitsch DMPlex_MatMultTransposeLeft3D_Internal(tvag, fpdof, lda, a, a); 560d71ae5a4SJacob Faibussowitsch break; 561ca3d3a14SMatthew G. Knepley } 562ca3d3a14SMatthew G. Knepley } else { 563ca3d3a14SMatthew G. Knepley switch (fdof) { 564d71ae5a4SJacob Faibussowitsch case 4: 565d71ae5a4SJacob Faibussowitsch DMPlex_MatMultTranspose2D_Internal(tvaf, gpdof, lda, a, a); 566d71ae5a4SJacob Faibussowitsch break; 567d71ae5a4SJacob Faibussowitsch case 9: 568d71ae5a4SJacob Faibussowitsch DMPlex_MatMultTranspose3D_Internal(tvaf, gpdof, lda, a, a); 569d71ae5a4SJacob Faibussowitsch break; 570ca3d3a14SMatthew G. Knepley } 571ca3d3a14SMatthew G. Knepley switch (gdof) { 572d71ae5a4SJacob Faibussowitsch case 4: 573d71ae5a4SJacob Faibussowitsch DMPlex_MatMultLeft2D_Internal(tvag, fpdof, lda, a, a); 574d71ae5a4SJacob Faibussowitsch break; 575d71ae5a4SJacob Faibussowitsch case 9: 576d71ae5a4SJacob Faibussowitsch DMPlex_MatMultLeft3D_Internal(tvag, fpdof, lda, a, a); 577d71ae5a4SJacob Faibussowitsch break; 578ca3d3a14SMatthew G. Knepley } 579ca3d3a14SMatthew G. Knepley } 5809566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(tv, &ta)); 5813ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 582ca3d3a14SMatthew G. Knepley } 583ca3d3a14SMatthew G. Knepley 584d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexBasisTransformPoint_Internal(DM dm, DM tdm, Vec tv, PetscInt p, PetscBool fieldActive[], PetscBool l2g, PetscScalar *a) 585d71ae5a4SJacob Faibussowitsch { 586ca3d3a14SMatthew G. Knepley PetscSection s; 587ca3d3a14SMatthew G. Knepley PetscSection clSection; 588ca3d3a14SMatthew G. Knepley IS clPoints; 589ca3d3a14SMatthew G. Knepley const PetscInt *clp; 590ca3d3a14SMatthew G. Knepley PetscInt *points = NULL; 591ca3d3a14SMatthew G. Knepley PetscInt Nf, f, Np, cp, dof, d = 0; 592ca3d3a14SMatthew G. Knepley 593ca3d3a14SMatthew G. Knepley PetscFunctionBegin; 5949566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, &s)); 5959566063dSJacob Faibussowitsch PetscCall(PetscSectionGetNumFields(s, &Nf)); 59607218a29SMatthew G. Knepley PetscCall(DMPlexGetCompressedClosure(dm, s, p, 0, &Np, &points, &clSection, &clPoints, &clp)); 597ca3d3a14SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 598ca3d3a14SMatthew G. Knepley for (cp = 0; cp < Np * 2; cp += 2) { 5999566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldDof(s, points[cp], f, &dof)); 600ca3d3a14SMatthew G. Knepley if (!dof) continue; 6019566063dSJacob Faibussowitsch if (fieldActive[f]) PetscCall(DMPlexBasisTransformField_Internal(dm, tdm, tv, points[cp], f, l2g, &a[d])); 602ca3d3a14SMatthew G. Knepley d += dof; 603ca3d3a14SMatthew G. Knepley } 604ca3d3a14SMatthew G. Knepley } 6059566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreCompressedClosure(dm, s, p, &Np, &points, &clSection, &clPoints, &clp)); 6063ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 607ca3d3a14SMatthew G. Knepley } 608ca3d3a14SMatthew G. Knepley 609d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexBasisTransformPointTensor_Internal(DM dm, DM tdm, Vec tv, PetscInt p, PetscBool l2g, PetscInt lda, PetscScalar *a) 610d71ae5a4SJacob Faibussowitsch { 611ca3d3a14SMatthew G. Knepley PetscSection s; 612ca3d3a14SMatthew G. Knepley PetscSection clSection; 613ca3d3a14SMatthew G. Knepley IS clPoints; 614ca3d3a14SMatthew G. Knepley const PetscInt *clp; 615ca3d3a14SMatthew G. Knepley PetscInt *points = NULL; 6168bdb3c71SMatthew G. Knepley PetscInt Nf, f, g, Np, cpf, cpg, fdof, gdof, r, c = 0; 617ca3d3a14SMatthew G. Knepley 618ca3d3a14SMatthew G. Knepley PetscFunctionBegin; 6199566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, &s)); 6209566063dSJacob Faibussowitsch PetscCall(PetscSectionGetNumFields(s, &Nf)); 62107218a29SMatthew G. Knepley PetscCall(DMPlexGetCompressedClosure(dm, s, p, 0, &Np, &points, &clSection, &clPoints, &clp)); 622ca3d3a14SMatthew G. Knepley for (f = 0, r = 0; f < Nf; ++f) { 623ca3d3a14SMatthew G. Knepley for (cpf = 0; cpf < Np * 2; cpf += 2) { 6249566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldDof(s, points[cpf], f, &fdof)); 625ca3d3a14SMatthew G. Knepley for (g = 0, c = 0; g < Nf; ++g) { 626ca3d3a14SMatthew G. Knepley for (cpg = 0; cpg < Np * 2; cpg += 2) { 6279566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldDof(s, points[cpg], g, &gdof)); 6289566063dSJacob Faibussowitsch PetscCall(DMPlexBasisTransformFieldTensor_Internal(dm, tdm, tv, points[cpf], f, points[cpg], g, l2g, lda, &a[r * lda + c])); 629ca3d3a14SMatthew G. Knepley c += gdof; 630ca3d3a14SMatthew G. Knepley } 631ca3d3a14SMatthew G. Knepley } 63263a3b9bcSJacob Faibussowitsch PetscCheck(c == lda, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid number of columns %" PetscInt_FMT " should be %" PetscInt_FMT, c, lda); 633ca3d3a14SMatthew G. Knepley r += fdof; 634ca3d3a14SMatthew G. Knepley } 635ca3d3a14SMatthew G. Knepley } 63663a3b9bcSJacob Faibussowitsch PetscCheck(r == lda, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid number of rows %" PetscInt_FMT " should be %" PetscInt_FMT, c, lda); 6379566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreCompressedClosure(dm, s, p, &Np, &points, &clSection, &clPoints, &clp)); 6383ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 639ca3d3a14SMatthew G. Knepley } 640ca3d3a14SMatthew G. Knepley 641d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexBasisTransform_Internal(DM dm, Vec lv, PetscBool l2g) 642d71ae5a4SJacob Faibussowitsch { 643ca3d3a14SMatthew G. Knepley DM tdm; 644ca3d3a14SMatthew G. Knepley Vec tv; 645ca3d3a14SMatthew G. Knepley PetscSection ts, s; 646ca3d3a14SMatthew G. Knepley const PetscScalar *ta; 647ca3d3a14SMatthew G. Knepley PetscScalar *a, *va; 648ca3d3a14SMatthew G. Knepley PetscInt pStart, pEnd, p, Nf, f; 649ca3d3a14SMatthew G. Knepley 650ca3d3a14SMatthew G. Knepley PetscFunctionBegin; 6519566063dSJacob Faibussowitsch PetscCall(DMGetBasisTransformDM_Internal(dm, &tdm)); 6529566063dSJacob Faibussowitsch PetscCall(DMGetBasisTransformVec_Internal(dm, &tv)); 6539566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(tdm, &ts)); 6549566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, &s)); 6559566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(s, &pStart, &pEnd)); 6569566063dSJacob Faibussowitsch PetscCall(PetscSectionGetNumFields(s, &Nf)); 6579566063dSJacob Faibussowitsch PetscCall(VecGetArray(lv, &a)); 6589566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(tv, &ta)); 659ca3d3a14SMatthew G. Knepley for (p = pStart; p < pEnd; ++p) { 660ca3d3a14SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 6619566063dSJacob Faibussowitsch PetscCall(DMPlexPointLocalFieldRef(dm, p, f, a, &va)); 6629566063dSJacob Faibussowitsch PetscCall(DMPlexBasisTransformField_Internal(dm, tdm, tv, p, f, l2g, va)); 663ca3d3a14SMatthew G. Knepley } 664ca3d3a14SMatthew G. Knepley } 6659566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(lv, &a)); 6669566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(tv, &ta)); 6673ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 668ca3d3a14SMatthew G. Knepley } 669ca3d3a14SMatthew G. Knepley 670ca3d3a14SMatthew G. Knepley /*@ 671ca3d3a14SMatthew G. Knepley DMPlexGlobalToLocalBasis - Transform the values in the given local vector from the global basis to the local basis 672ca3d3a14SMatthew G. Knepley 673ca3d3a14SMatthew G. Knepley Input Parameters: 674a1cb98faSBarry Smith + dm - The `DM` 675ca3d3a14SMatthew G. Knepley - lv - A local vector with values in the global basis 676ca3d3a14SMatthew G. Knepley 6772fe279fdSBarry Smith Output Parameter: 678ca3d3a14SMatthew G. Knepley . lv - A local vector with values in the local basis 679ca3d3a14SMatthew G. Knepley 680ca3d3a14SMatthew G. Knepley Level: developer 681ca3d3a14SMatthew G. Knepley 682a1cb98faSBarry Smith Note: 683a1cb98faSBarry Smith This method is only intended to be called inside `DMGlobalToLocal()`. It is unlikely that a user will have a local vector full of coefficients for the global basis unless they are reimplementing GlobalToLocal. 684a1cb98faSBarry Smith 6851cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexLocalToGlobalBasis()`, `DMGetLocalSection()`, `DMPlexCreateBasisRotation()` 686ca3d3a14SMatthew G. Knepley @*/ 687d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexGlobalToLocalBasis(DM dm, Vec lv) 688d71ae5a4SJacob Faibussowitsch { 689ca3d3a14SMatthew G. Knepley PetscFunctionBegin; 690ca3d3a14SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 691ca3d3a14SMatthew G. Knepley PetscValidHeaderSpecific(lv, VEC_CLASSID, 2); 6929566063dSJacob Faibussowitsch PetscCall(DMPlexBasisTransform_Internal(dm, lv, PETSC_FALSE)); 6933ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 694ca3d3a14SMatthew G. Knepley } 695ca3d3a14SMatthew G. Knepley 696ca3d3a14SMatthew G. Knepley /*@ 697ca3d3a14SMatthew G. Knepley DMPlexLocalToGlobalBasis - Transform the values in the given local vector from the local basis to the global basis 698ca3d3a14SMatthew G. Knepley 699ca3d3a14SMatthew G. Knepley Input Parameters: 700a1cb98faSBarry Smith + dm - The `DM` 701ca3d3a14SMatthew G. Knepley - lv - A local vector with values in the local basis 702ca3d3a14SMatthew G. Knepley 7032fe279fdSBarry Smith Output Parameter: 704ca3d3a14SMatthew G. Knepley . lv - A local vector with values in the global basis 705ca3d3a14SMatthew G. Knepley 706ca3d3a14SMatthew G. Knepley Level: developer 707ca3d3a14SMatthew G. Knepley 708a1cb98faSBarry Smith Note: 709a1cb98faSBarry Smith This method is only intended to be called inside `DMGlobalToLocal()`. It is unlikely that a user would want a local vector full of coefficients for the global basis unless they are reimplementing GlobalToLocal. 710a1cb98faSBarry Smith 7111cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexGlobalToLocalBasis()`, `DMGetLocalSection()`, `DMPlexCreateBasisRotation()` 712ca3d3a14SMatthew G. Knepley @*/ 713d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexLocalToGlobalBasis(DM dm, Vec lv) 714d71ae5a4SJacob Faibussowitsch { 715ca3d3a14SMatthew G. Knepley PetscFunctionBegin; 716ca3d3a14SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 717ca3d3a14SMatthew G. Knepley PetscValidHeaderSpecific(lv, VEC_CLASSID, 2); 7189566063dSJacob Faibussowitsch PetscCall(DMPlexBasisTransform_Internal(dm, lv, PETSC_TRUE)); 7193ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 720ca3d3a14SMatthew G. Knepley } 721ca3d3a14SMatthew G. Knepley 722ca3d3a14SMatthew G. Knepley /*@ 723ca3d3a14SMatthew G. Knepley DMPlexCreateBasisRotation - Create an internal transformation from the global basis, used to specify boundary conditions 724ca3d3a14SMatthew G. Knepley and global solutions, to a local basis, appropriate for discretization integrals and assembly. 725ca3d3a14SMatthew G. Knepley 726ca3d3a14SMatthew G. Knepley Input Parameters: 727a1cb98faSBarry Smith + dm - The `DM` 728ca3d3a14SMatthew G. Knepley . alpha - The first Euler angle, and in 2D the only one 729ca3d3a14SMatthew G. Knepley . beta - The second Euler angle 730f0fc11ceSJed Brown - gamma - The third Euler angle 731ca3d3a14SMatthew G. Knepley 732ca3d3a14SMatthew G. Knepley Level: developer 733ca3d3a14SMatthew G. Knepley 734a1cb98faSBarry Smith Note: 735a1cb98faSBarry Smith Following https://en.wikipedia.org/wiki/Euler_angles, we will specify Euler angles by extrinsic rotations, meaning that 736a1cb98faSBarry Smith we rotate with respect to a fixed initial coordinate system, the local basis (x-y-z). The global basis (X-Y-Z) is reached as follows 737a1cb98faSBarry Smith .vb 738a1cb98faSBarry Smith The XYZ system rotates about the z axis by alpha. The X axis is now at angle alpha with respect to the x axis. 739a1cb98faSBarry Smith The XYZ system rotates again about the x axis by beta. The Z axis is now at angle beta with respect to the z axis. 740a1cb98faSBarry Smith The XYZ system rotates a third time about the z axis by gamma. 741a1cb98faSBarry Smith .ve 742a1cb98faSBarry Smith 7431cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexGlobalToLocalBasis()`, `DMPlexLocalToGlobalBasis()` 744ca3d3a14SMatthew G. Knepley @*/ 745d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexCreateBasisRotation(DM dm, PetscReal alpha, PetscReal beta, PetscReal gamma) 746d71ae5a4SJacob Faibussowitsch { 747ca3d3a14SMatthew G. Knepley RotCtx *rc; 748ca3d3a14SMatthew G. Knepley PetscInt cdim; 749ca3d3a14SMatthew G. Knepley 750362febeeSStefano Zampini PetscFunctionBegin; 7519566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDim(dm, &cdim)); 7529566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(1, &rc)); 753ca3d3a14SMatthew G. Knepley dm->transformCtx = rc; 754ca3d3a14SMatthew G. Knepley dm->transformSetUp = DMPlexBasisTransformSetUp_Rotation_Internal; 755ca3d3a14SMatthew G. Knepley dm->transformDestroy = DMPlexBasisTransformDestroy_Rotation_Internal; 756ca3d3a14SMatthew G. Knepley dm->transformGetMatrix = DMPlexBasisTransformGetMatrix_Rotation_Internal; 757ca3d3a14SMatthew G. Knepley rc->dim = cdim; 758ca3d3a14SMatthew G. Knepley rc->alpha = alpha; 759ca3d3a14SMatthew G. Knepley rc->beta = beta; 760ca3d3a14SMatthew G. Knepley rc->gamma = gamma; 7619566063dSJacob Faibussowitsch PetscCall((*dm->transformSetUp)(dm, dm->transformCtx)); 7629566063dSJacob Faibussowitsch PetscCall(DMConstructBasisTransform_Internal(dm)); 7633ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 764ca3d3a14SMatthew G. Knepley } 765ca3d3a14SMatthew G. Knepley 766b278463cSMatthew G. Knepley /*@C 767ece3a9fcSMatthew G. Knepley DMPlexInsertBoundaryValuesEssential - Insert boundary values into a local vector using a function of the coordinates 768b278463cSMatthew G. Knepley 769b278463cSMatthew G. Knepley Input Parameters: 770a1cb98faSBarry Smith + dm - The `DM`, with a `PetscDS` that matches the problem being constrained 771b278463cSMatthew G. Knepley . time - The time 772b278463cSMatthew G. Knepley . field - The field to constrain 7731c531cf8SMatthew G. Knepley . Nc - The number of constrained field components, or 0 for all components 77420f4b53cSBarry Smith . comps - An array of constrained component numbers, or `NULL` for all components 775a1cb98faSBarry Smith . label - The `DMLabel` defining constrained points 776a1cb98faSBarry Smith . numids - The number of `DMLabel` ids for constrained points 777b278463cSMatthew G. Knepley . ids - An array of ids for constrained points 778b278463cSMatthew G. Knepley . func - A pointwise function giving boundary values 779b278463cSMatthew G. Knepley - ctx - An optional user context for bcFunc 780b278463cSMatthew G. Knepley 781b278463cSMatthew G. Knepley Output Parameter: 782b278463cSMatthew G. Knepley . locX - A local vector to receives the boundary values 783b278463cSMatthew G. Knepley 784b278463cSMatthew G. Knepley Level: developer 785b278463cSMatthew G. Knepley 7861cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMLabel`, `DMPlexInsertBoundaryValuesEssentialField()`, `DMPlexInsertBoundaryValuesEssentialBdField()`, `DMAddBoundary()` 787b278463cSMatthew G. Knepley @*/ 788d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexInsertBoundaryValuesEssential(DM dm, PetscReal time, PetscInt field, PetscInt Nc, const PetscInt comps[], DMLabel label, PetscInt numids, const PetscInt ids[], PetscErrorCode (*func)(PetscInt, PetscReal, const PetscReal[], PetscInt, PetscScalar *, void *), void *ctx, Vec locX) 789d71ae5a4SJacob Faibussowitsch { 7900163fd50SMatthew G. Knepley PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal x[], PetscInt, PetscScalar *u, void *ctx); 79155f2e967SMatthew G. Knepley void **ctxs; 792d7ddef95SMatthew G. Knepley PetscInt numFields; 793d7ddef95SMatthew G. Knepley 794d7ddef95SMatthew G. Knepley PetscFunctionBegin; 7959566063dSJacob Faibussowitsch PetscCall(DMGetNumFields(dm, &numFields)); 7969566063dSJacob Faibussowitsch PetscCall(PetscCalloc2(numFields, &funcs, numFields, &ctxs)); 797d7ddef95SMatthew G. Knepley funcs[field] = func; 798d7ddef95SMatthew G. Knepley ctxs[field] = ctx; 7999566063dSJacob Faibussowitsch PetscCall(DMProjectFunctionLabelLocal(dm, time, label, numids, ids, Nc, comps, funcs, ctxs, INSERT_BC_VALUES, locX)); 8009566063dSJacob Faibussowitsch PetscCall(PetscFree2(funcs, ctxs)); 8013ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 802d7ddef95SMatthew G. Knepley } 803d7ddef95SMatthew G. Knepley 804b278463cSMatthew G. Knepley /*@C 805ece3a9fcSMatthew G. Knepley DMPlexInsertBoundaryValuesEssentialField - Insert boundary values into a local vector using a function of the coordinates and field data 806b278463cSMatthew G. Knepley 807b278463cSMatthew G. Knepley Input Parameters: 808a1cb98faSBarry Smith + dm - The `DM`, with a `PetscDS` that matches the problem being constrained 809b278463cSMatthew G. Knepley . time - The time 810b278463cSMatthew G. Knepley . locU - A local vector with the input solution values 811b278463cSMatthew G. Knepley . field - The field to constrain 8121c531cf8SMatthew G. Knepley . Nc - The number of constrained field components, or 0 for all components 81320f4b53cSBarry Smith . comps - An array of constrained component numbers, or `NULL` for all components 814a1cb98faSBarry Smith . label - The `DMLabel` defining constrained points 815a1cb98faSBarry Smith . numids - The number of `DMLabel` ids for constrained points 816b278463cSMatthew G. Knepley . ids - An array of ids for constrained points 817b278463cSMatthew G. Knepley . func - A pointwise function giving boundary values 818b278463cSMatthew G. Knepley - ctx - An optional user context for bcFunc 819b278463cSMatthew G. Knepley 820b278463cSMatthew G. Knepley Output Parameter: 821b278463cSMatthew G. Knepley . locX - A local vector to receives the boundary values 822b278463cSMatthew G. Knepley 823b278463cSMatthew G. Knepley Level: developer 824b278463cSMatthew G. Knepley 8251cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexInsertBoundaryValuesEssential()`, `DMPlexInsertBoundaryValuesEssentialBdField()`, `DMAddBoundary()` 826b278463cSMatthew G. Knepley @*/ 827d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexInsertBoundaryValuesEssentialField(DM dm, PetscReal time, Vec locU, PetscInt field, PetscInt Nc, const PetscInt comps[], DMLabel label, PetscInt numids, const PetscInt ids[], void (*func)(PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], PetscReal, const PetscReal[], PetscInt, const PetscScalar[], PetscScalar[]), void *ctx, Vec locX) 828d71ae5a4SJacob Faibussowitsch { 8299371c9d4SSatish Balay void (**funcs)(PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], PetscReal, const PetscReal[], PetscInt, const PetscScalar[], PetscScalar[]); 830c60e475cSMatthew G. Knepley void **ctxs; 831c60e475cSMatthew G. Knepley PetscInt numFields; 832c60e475cSMatthew G. Knepley 833c60e475cSMatthew G. Knepley PetscFunctionBegin; 8349566063dSJacob Faibussowitsch PetscCall(DMGetNumFields(dm, &numFields)); 8359566063dSJacob Faibussowitsch PetscCall(PetscCalloc2(numFields, &funcs, numFields, &ctxs)); 836c60e475cSMatthew G. Knepley funcs[field] = func; 837c60e475cSMatthew G. Knepley ctxs[field] = ctx; 8389566063dSJacob Faibussowitsch PetscCall(DMProjectFieldLabelLocal(dm, time, label, numids, ids, Nc, comps, locU, funcs, INSERT_BC_VALUES, locX)); 8399566063dSJacob Faibussowitsch PetscCall(PetscFree2(funcs, ctxs)); 8403ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 841c60e475cSMatthew G. Knepley } 842c60e475cSMatthew G. Knepley 843b278463cSMatthew G. Knepley /*@C 844d5b43468SJose E. Roman DMPlexInsertBoundaryValuesEssentialBdField - Insert boundary values into a local vector using a function of the coordinates and boundary field data 845ece3a9fcSMatthew G. Knepley 84620f4b53cSBarry Smith Collective 847ece3a9fcSMatthew G. Knepley 848ece3a9fcSMatthew G. Knepley Input Parameters: 849a1cb98faSBarry Smith + dm - The `DM`, with a `PetscDS` that matches the problem being constrained 850ece3a9fcSMatthew G. Knepley . time - The time 851ece3a9fcSMatthew G. Knepley . locU - A local vector with the input solution values 852ece3a9fcSMatthew G. Knepley . field - The field to constrain 853ece3a9fcSMatthew G. Knepley . Nc - The number of constrained field components, or 0 for all components 85420f4b53cSBarry Smith . comps - An array of constrained component numbers, or `NULL` for all components 855a1cb98faSBarry Smith . label - The `DMLabel` defining constrained points 856a1cb98faSBarry Smith . numids - The number of `DMLabel` ids for constrained points 857ece3a9fcSMatthew G. Knepley . ids - An array of ids for constrained points 85820f4b53cSBarry Smith . func - A pointwise function giving boundary values, the calling sequence is given in `DMProjectBdFieldLabelLocal()` 85920f4b53cSBarry Smith - ctx - An optional user context for `func` 860ece3a9fcSMatthew G. Knepley 861ece3a9fcSMatthew G. Knepley Output Parameter: 862ece3a9fcSMatthew G. Knepley . locX - A local vector to receive the boundary values 863ece3a9fcSMatthew G. Knepley 864ece3a9fcSMatthew G. Knepley Level: developer 865ece3a9fcSMatthew G. Knepley 8661cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMProjectBdFieldLabelLocal()`, `DMPlexInsertBoundaryValuesEssential()`, `DMPlexInsertBoundaryValuesEssentialField()`, `DMAddBoundary()` 867ece3a9fcSMatthew G. Knepley @*/ 868d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexInsertBoundaryValuesEssentialBdField(DM dm, PetscReal time, Vec locU, PetscInt field, PetscInt Nc, const PetscInt comps[], DMLabel label, PetscInt numids, const PetscInt ids[], void (*func)(PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], PetscReal, const PetscReal[], const PetscReal[], PetscInt, const PetscScalar[], PetscScalar[]), void *ctx, Vec locX) 869d71ae5a4SJacob Faibussowitsch { 8709371c9d4SSatish Balay void (**funcs)(PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], PetscReal, const PetscReal[], const PetscReal[], PetscInt, const PetscScalar[], PetscScalar[]); 871ece3a9fcSMatthew G. Knepley void **ctxs; 872ece3a9fcSMatthew G. Knepley PetscInt numFields; 873ece3a9fcSMatthew G. Knepley 874ece3a9fcSMatthew G. Knepley PetscFunctionBegin; 8759566063dSJacob Faibussowitsch PetscCall(DMGetNumFields(dm, &numFields)); 8769566063dSJacob Faibussowitsch PetscCall(PetscCalloc2(numFields, &funcs, numFields, &ctxs)); 877ece3a9fcSMatthew G. Knepley funcs[field] = func; 878ece3a9fcSMatthew G. Knepley ctxs[field] = ctx; 8799566063dSJacob Faibussowitsch PetscCall(DMProjectBdFieldLabelLocal(dm, time, label, numids, ids, Nc, comps, locU, funcs, INSERT_BC_VALUES, locX)); 8809566063dSJacob Faibussowitsch PetscCall(PetscFree2(funcs, ctxs)); 8813ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 882ece3a9fcSMatthew G. Knepley } 883ece3a9fcSMatthew G. Knepley 884ece3a9fcSMatthew G. Knepley /*@C 885b278463cSMatthew G. Knepley DMPlexInsertBoundaryValuesRiemann - Insert boundary values into a local vector 886b278463cSMatthew G. Knepley 887b278463cSMatthew G. Knepley Input Parameters: 888a1cb98faSBarry Smith + dm - The `DM`, with a `PetscDS` that matches the problem being constrained 889b278463cSMatthew G. Knepley . time - The time 890b278463cSMatthew G. Knepley . faceGeometry - A vector with the FVM face geometry information 891b278463cSMatthew G. Knepley . cellGeometry - A vector with the FVM cell geometry information 892b278463cSMatthew G. Knepley . Grad - A vector with the FVM cell gradient information 893b278463cSMatthew G. Knepley . field - The field to constrain 8941c531cf8SMatthew G. Knepley . Nc - The number of constrained field components, or 0 for all components 89520f4b53cSBarry Smith . comps - An array of constrained component numbers, or `NULL` for all components 896a1cb98faSBarry Smith . label - The `DMLabel` defining constrained points 897a1cb98faSBarry Smith . numids - The number of `DMLabel` ids for constrained points 898b278463cSMatthew G. Knepley . ids - An array of ids for constrained points 899b278463cSMatthew G. Knepley . func - A pointwise function giving boundary values 900b278463cSMatthew G. Knepley - ctx - An optional user context for bcFunc 901b278463cSMatthew G. Knepley 902b278463cSMatthew G. Knepley Output Parameter: 903b278463cSMatthew G. Knepley . locX - A local vector to receives the boundary values 904b278463cSMatthew G. Knepley 905b278463cSMatthew G. Knepley Level: developer 906b278463cSMatthew G. Knepley 907a1cb98faSBarry Smith Note: 908a1cb98faSBarry Smith This implementation currently ignores the numcomps/comps argument from `DMAddBoundary()` 909a1cb98faSBarry Smith 9101cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexInsertBoundaryValuesEssential()`, `DMPlexInsertBoundaryValuesEssentialField()`, `DMAddBoundary()` 911b278463cSMatthew G. Knepley @*/ 912d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexInsertBoundaryValuesRiemann(DM dm, PetscReal time, Vec faceGeometry, Vec cellGeometry, Vec Grad, PetscInt field, PetscInt Nc, const PetscInt comps[], DMLabel label, PetscInt numids, const PetscInt ids[], PetscErrorCode (*func)(PetscReal, const PetscReal *, const PetscReal *, const PetscScalar *, PetscScalar *, void *), void *ctx, Vec locX) 913d71ae5a4SJacob Faibussowitsch { 91461f58d28SMatthew G. Knepley PetscDS prob; 915da97024aSMatthew G. Knepley PetscSF sf; 916d7ddef95SMatthew G. Knepley DM dmFace, dmCell, dmGrad; 91720369375SToby Isaac const PetscScalar *facegeom, *cellgeom = NULL, *grad; 918da97024aSMatthew G. Knepley const PetscInt *leaves; 919d7ddef95SMatthew G. Knepley PetscScalar *x, *fx; 920520b3818SMatthew G. Knepley PetscInt dim, nleaves, loc, fStart, fEnd, pdim, i; 9213ba16761SJacob Faibussowitsch PetscErrorCode ierru = PETSC_SUCCESS; 922d7ddef95SMatthew G. Knepley 923d7ddef95SMatthew G. Knepley PetscFunctionBegin; 9249566063dSJacob Faibussowitsch PetscCall(DMGetPointSF(dm, &sf)); 9259566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(sf, NULL, &nleaves, &leaves, NULL)); 926da97024aSMatthew G. Knepley nleaves = PetscMax(0, nleaves); 9279566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 9289566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(dm, 1, &fStart, &fEnd)); 9299566063dSJacob Faibussowitsch PetscCall(DMGetDS(dm, &prob)); 9309566063dSJacob Faibussowitsch PetscCall(VecGetDM(faceGeometry, &dmFace)); 9319566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(faceGeometry, &facegeom)); 93220369375SToby Isaac if (cellGeometry) { 9339566063dSJacob Faibussowitsch PetscCall(VecGetDM(cellGeometry, &dmCell)); 9349566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(cellGeometry, &cellgeom)); 93520369375SToby Isaac } 936d7ddef95SMatthew G. Knepley if (Grad) { 937c0a6632aSMatthew G. Knepley PetscFV fv; 938c0a6632aSMatthew G. Knepley 9399566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(prob, field, (PetscObject *)&fv)); 9409566063dSJacob Faibussowitsch PetscCall(VecGetDM(Grad, &dmGrad)); 9419566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(Grad, &grad)); 9429566063dSJacob Faibussowitsch PetscCall(PetscFVGetNumComponents(fv, &pdim)); 9439566063dSJacob Faibussowitsch PetscCall(DMGetWorkArray(dm, pdim, MPIU_SCALAR, &fx)); 944d7ddef95SMatthew G. Knepley } 9459566063dSJacob Faibussowitsch PetscCall(VecGetArray(locX, &x)); 946d7ddef95SMatthew G. Knepley for (i = 0; i < numids; ++i) { 947d7ddef95SMatthew G. Knepley IS faceIS; 948d7ddef95SMatthew G. Knepley const PetscInt *faces; 949d7ddef95SMatthew G. Knepley PetscInt numFaces, f; 950d7ddef95SMatthew G. Knepley 9519566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(label, ids[i], &faceIS)); 952d7ddef95SMatthew G. Knepley if (!faceIS) continue; /* No points with that id on this process */ 9539566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(faceIS, &numFaces)); 9549566063dSJacob Faibussowitsch PetscCall(ISGetIndices(faceIS, &faces)); 955d7ddef95SMatthew G. Knepley for (f = 0; f < numFaces; ++f) { 956d7ddef95SMatthew G. Knepley const PetscInt face = faces[f], *cells; 957640bce14SSatish Balay PetscFVFaceGeom *fg; 958d7ddef95SMatthew G. Knepley 959d7ddef95SMatthew G. Knepley if ((face < fStart) || (face >= fEnd)) continue; /* Refinement adds non-faces to labels */ 9609566063dSJacob Faibussowitsch PetscCall(PetscFindInt(face, nleaves, (PetscInt *)leaves, &loc)); 961da97024aSMatthew G. Knepley if (loc >= 0) continue; 9629566063dSJacob Faibussowitsch PetscCall(DMPlexPointLocalRead(dmFace, face, facegeom, &fg)); 9639566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(dm, face, &cells)); 964d7ddef95SMatthew G. Knepley if (Grad) { 965640bce14SSatish Balay PetscFVCellGeom *cg; 966640bce14SSatish Balay PetscScalar *cx, *cgrad; 967d7ddef95SMatthew G. Knepley PetscScalar *xG; 968d7ddef95SMatthew G. Knepley PetscReal dx[3]; 969d7ddef95SMatthew G. Knepley PetscInt d; 970d7ddef95SMatthew G. Knepley 9719566063dSJacob Faibussowitsch PetscCall(DMPlexPointLocalRead(dmCell, cells[0], cellgeom, &cg)); 9729566063dSJacob Faibussowitsch PetscCall(DMPlexPointLocalRead(dm, cells[0], x, &cx)); 9739566063dSJacob Faibussowitsch PetscCall(DMPlexPointLocalRead(dmGrad, cells[0], grad, &cgrad)); 9749566063dSJacob Faibussowitsch PetscCall(DMPlexPointLocalFieldRef(dm, cells[1], field, x, &xG)); 975d7ddef95SMatthew G. Knepley DMPlex_WaxpyD_Internal(dim, -1, cg->centroid, fg->centroid, dx); 976d7ddef95SMatthew G. Knepley for (d = 0; d < pdim; ++d) fx[d] = cx[d] + DMPlex_DotD_Internal(dim, &cgrad[d * dim], dx); 9779566063dSJacob Faibussowitsch PetscCall((*func)(time, fg->centroid, fg->normal, fx, xG, ctx)); 978d7ddef95SMatthew G. Knepley } else { 979640bce14SSatish Balay PetscScalar *xI; 980d7ddef95SMatthew G. Knepley PetscScalar *xG; 981d7ddef95SMatthew G. Knepley 9829566063dSJacob Faibussowitsch PetscCall(DMPlexPointLocalRead(dm, cells[0], x, &xI)); 9839566063dSJacob Faibussowitsch PetscCall(DMPlexPointLocalFieldRef(dm, cells[1], field, x, &xG)); 984e735a8a9SMatthew G. Knepley ierru = (*func)(time, fg->centroid, fg->normal, xI, xG, ctx); 985e735a8a9SMatthew G. Knepley if (ierru) { 9869566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(faceIS, &faces)); 9879566063dSJacob Faibussowitsch PetscCall(ISDestroy(&faceIS)); 988e735a8a9SMatthew G. Knepley goto cleanup; 989e735a8a9SMatthew G. Knepley } 990d7ddef95SMatthew G. Knepley } 991d7ddef95SMatthew G. Knepley } 9929566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(faceIS, &faces)); 9939566063dSJacob Faibussowitsch PetscCall(ISDestroy(&faceIS)); 994d7ddef95SMatthew G. Knepley } 995e735a8a9SMatthew G. Knepley cleanup: 9969566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(locX, &x)); 997d7ddef95SMatthew G. Knepley if (Grad) { 9989566063dSJacob Faibussowitsch PetscCall(DMRestoreWorkArray(dm, pdim, MPIU_SCALAR, &fx)); 9999566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(Grad, &grad)); 1000d7ddef95SMatthew G. Knepley } 10019566063dSJacob Faibussowitsch if (cellGeometry) PetscCall(VecRestoreArrayRead(cellGeometry, &cellgeom)); 10029566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(faceGeometry, &facegeom)); 10039566063dSJacob Faibussowitsch PetscCall(ierru); 10043ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1005d7ddef95SMatthew G. Knepley } 1006d7ddef95SMatthew G. Knepley 1007d71ae5a4SJacob Faibussowitsch static PetscErrorCode zero(PetscInt dim, PetscReal time, const PetscReal x[], PetscInt Nc, PetscScalar *u, void *ctx) 1008d71ae5a4SJacob Faibussowitsch { 10090c364540SMatthew G. Knepley PetscInt c; 10100c364540SMatthew G. Knepley for (c = 0; c < Nc; ++c) u[c] = 0.0; 10113ba16761SJacob Faibussowitsch return PETSC_SUCCESS; 10120c364540SMatthew G. Knepley } 10130c364540SMatthew G. Knepley 1014d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexInsertBoundaryValues_Plex(DM dm, PetscBool insertEssential, Vec locX, PetscReal time, Vec faceGeomFVM, Vec cellGeomFVM, Vec gradFVM) 1015d71ae5a4SJacob Faibussowitsch { 10160c364540SMatthew G. Knepley PetscObject isZero; 1017e5e52638SMatthew G. Knepley PetscDS prob; 1018d7ddef95SMatthew G. Knepley PetscInt numBd, b; 101955f2e967SMatthew G. Knepley 102055f2e967SMatthew G. Knepley PetscFunctionBegin; 10219566063dSJacob Faibussowitsch PetscCall(DMGetDS(dm, &prob)); 10229566063dSJacob Faibussowitsch PetscCall(PetscDSGetNumBoundary(prob, &numBd)); 10239566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)locX, "__Vec_bc_zero__", &isZero)); 102455f2e967SMatthew G. Knepley for (b = 0; b < numBd; ++b) { 102545480ffeSMatthew G. Knepley PetscWeakForm wf; 1026f971fd6bSMatthew G. Knepley DMBoundaryConditionType type; 102745480ffeSMatthew G. Knepley const char *name; 1028d7ddef95SMatthew G. Knepley DMLabel label; 10291c531cf8SMatthew G. Knepley PetscInt field, Nc; 10301c531cf8SMatthew G. Knepley const PetscInt *comps; 1031d7ddef95SMatthew G. Knepley PetscObject obj; 1032d7ddef95SMatthew G. Knepley PetscClassId id; 103345480ffeSMatthew G. Knepley void (*bvfunc)(void); 1034d7ddef95SMatthew G. Knepley PetscInt numids; 1035d7ddef95SMatthew G. Knepley const PetscInt *ids; 103655f2e967SMatthew G. Knepley void *ctx; 103755f2e967SMatthew G. Knepley 10389566063dSJacob Faibussowitsch PetscCall(PetscDSGetBoundary(prob, b, &wf, &type, &name, &label, &numids, &ids, &field, &Nc, &comps, &bvfunc, NULL, &ctx)); 1039f971fd6bSMatthew G. Knepley if (insertEssential != (type & DM_BC_ESSENTIAL)) continue; 10409566063dSJacob Faibussowitsch PetscCall(DMGetField(dm, field, NULL, &obj)); 10419566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 1042d7ddef95SMatthew G. Knepley if (id == PETSCFE_CLASSID) { 1043c60e475cSMatthew G. Knepley switch (type) { 1044c60e475cSMatthew G. Knepley /* for FEM, there is no insertion to be done for non-essential boundary conditions */ 10459371c9d4SSatish Balay case DM_BC_ESSENTIAL: { 104645480ffeSMatthew G. Knepley PetscSimplePointFunc func = (PetscSimplePointFunc)bvfunc; 104745480ffeSMatthew G. Knepley 104845480ffeSMatthew G. Knepley if (isZero) func = zero; 10499566063dSJacob Faibussowitsch PetscCall(DMPlexLabelAddCells(dm, label)); 10509566063dSJacob Faibussowitsch PetscCall(DMPlexInsertBoundaryValuesEssential(dm, time, field, Nc, comps, label, numids, ids, func, ctx, locX)); 10519566063dSJacob Faibussowitsch PetscCall(DMPlexLabelClearCells(dm, label)); 10529371c9d4SSatish Balay } break; 10539371c9d4SSatish Balay case DM_BC_ESSENTIAL_FIELD: { 105445480ffeSMatthew G. Knepley PetscPointFunc func = (PetscPointFunc)bvfunc; 105545480ffeSMatthew G. Knepley 10569566063dSJacob Faibussowitsch PetscCall(DMPlexLabelAddCells(dm, label)); 10579566063dSJacob Faibussowitsch PetscCall(DMPlexInsertBoundaryValuesEssentialField(dm, time, locX, field, Nc, comps, label, numids, ids, func, ctx, locX)); 10589566063dSJacob Faibussowitsch PetscCall(DMPlexLabelClearCells(dm, label)); 10599371c9d4SSatish Balay } break; 1060d71ae5a4SJacob Faibussowitsch default: 1061d71ae5a4SJacob Faibussowitsch break; 1062c60e475cSMatthew G. Knepley } 1063d7ddef95SMatthew G. Knepley } else if (id == PETSCFV_CLASSID) { 106445480ffeSMatthew G. Knepley { 106545480ffeSMatthew G. Knepley PetscErrorCode (*func)(PetscReal, const PetscReal *, const PetscReal *, const PetscScalar *, PetscScalar *, void *) = (PetscErrorCode(*)(PetscReal, const PetscReal *, const PetscReal *, const PetscScalar *, PetscScalar *, void *))bvfunc; 106645480ffeSMatthew G. Knepley 106743ea7facSMatthew G. Knepley if (!faceGeomFVM) continue; 10689566063dSJacob Faibussowitsch PetscCall(DMPlexInsertBoundaryValuesRiemann(dm, time, faceGeomFVM, cellGeomFVM, gradFVM, field, Nc, comps, label, numids, ids, func, ctx, locX)); 106945480ffeSMatthew G. Knepley } 107063a3b9bcSJacob Faibussowitsch } else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, field); 107155f2e967SMatthew G. Knepley } 10723ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 107355f2e967SMatthew G. Knepley } 107455f2e967SMatthew G. Knepley 1075d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexInsertTimeDerivativeBoundaryValues_Plex(DM dm, PetscBool insertEssential, Vec locX, PetscReal time, Vec faceGeomFVM, Vec cellGeomFVM, Vec gradFVM) 1076d71ae5a4SJacob Faibussowitsch { 107756cf3b9cSMatthew G. Knepley PetscObject isZero; 107856cf3b9cSMatthew G. Knepley PetscDS prob; 107956cf3b9cSMatthew G. Knepley PetscInt numBd, b; 108056cf3b9cSMatthew G. Knepley 108156cf3b9cSMatthew G. Knepley PetscFunctionBegin; 10823ba16761SJacob Faibussowitsch if (!locX) PetscFunctionReturn(PETSC_SUCCESS); 10839566063dSJacob Faibussowitsch PetscCall(DMGetDS(dm, &prob)); 10849566063dSJacob Faibussowitsch PetscCall(PetscDSGetNumBoundary(prob, &numBd)); 10859566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)locX, "__Vec_bc_zero__", &isZero)); 108656cf3b9cSMatthew G. Knepley for (b = 0; b < numBd; ++b) { 108745480ffeSMatthew G. Knepley PetscWeakForm wf; 108856cf3b9cSMatthew G. Knepley DMBoundaryConditionType type; 108945480ffeSMatthew G. Knepley const char *name; 109056cf3b9cSMatthew G. Knepley DMLabel label; 109156cf3b9cSMatthew G. Knepley PetscInt field, Nc; 109256cf3b9cSMatthew G. Knepley const PetscInt *comps; 109356cf3b9cSMatthew G. Knepley PetscObject obj; 109456cf3b9cSMatthew G. Knepley PetscClassId id; 109556cf3b9cSMatthew G. Knepley PetscInt numids; 109656cf3b9cSMatthew G. Knepley const PetscInt *ids; 109745480ffeSMatthew G. Knepley void (*bvfunc)(void); 109856cf3b9cSMatthew G. Knepley void *ctx; 109956cf3b9cSMatthew G. Knepley 11009566063dSJacob Faibussowitsch PetscCall(PetscDSGetBoundary(prob, b, &wf, &type, &name, &label, &numids, &ids, &field, &Nc, &comps, NULL, &bvfunc, &ctx)); 110156cf3b9cSMatthew G. Knepley if (insertEssential != (type & DM_BC_ESSENTIAL)) continue; 11029566063dSJacob Faibussowitsch PetscCall(DMGetField(dm, field, NULL, &obj)); 11039566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 110456cf3b9cSMatthew G. Knepley if (id == PETSCFE_CLASSID) { 110556cf3b9cSMatthew G. Knepley switch (type) { 110656cf3b9cSMatthew G. Knepley /* for FEM, there is no insertion to be done for non-essential boundary conditions */ 11079371c9d4SSatish Balay case DM_BC_ESSENTIAL: { 110845480ffeSMatthew G. Knepley PetscSimplePointFunc func_t = (PetscSimplePointFunc)bvfunc; 110945480ffeSMatthew G. Knepley 111045480ffeSMatthew G. Knepley if (isZero) func_t = zero; 11119566063dSJacob Faibussowitsch PetscCall(DMPlexLabelAddCells(dm, label)); 11129566063dSJacob Faibussowitsch PetscCall(DMPlexInsertBoundaryValuesEssential(dm, time, field, Nc, comps, label, numids, ids, func_t, ctx, locX)); 11139566063dSJacob Faibussowitsch PetscCall(DMPlexLabelClearCells(dm, label)); 11149371c9d4SSatish Balay } break; 11159371c9d4SSatish Balay case DM_BC_ESSENTIAL_FIELD: { 111645480ffeSMatthew G. Knepley PetscPointFunc func_t = (PetscPointFunc)bvfunc; 111745480ffeSMatthew G. Knepley 11189566063dSJacob Faibussowitsch PetscCall(DMPlexLabelAddCells(dm, label)); 11199566063dSJacob Faibussowitsch PetscCall(DMPlexInsertBoundaryValuesEssentialField(dm, time, locX, field, Nc, comps, label, numids, ids, func_t, ctx, locX)); 11209566063dSJacob Faibussowitsch PetscCall(DMPlexLabelClearCells(dm, label)); 11219371c9d4SSatish Balay } break; 1122d71ae5a4SJacob Faibussowitsch default: 1123d71ae5a4SJacob Faibussowitsch break; 112456cf3b9cSMatthew G. Knepley } 112563a3b9bcSJacob Faibussowitsch } else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, field); 112656cf3b9cSMatthew G. Knepley } 11273ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 112856cf3b9cSMatthew G. Knepley } 112956cf3b9cSMatthew G. Knepley 1130f1d73a7aSMatthew G. Knepley /*@ 1131f1d73a7aSMatthew G. Knepley DMPlexInsertBoundaryValues - Puts coefficients which represent boundary values into the local solution vector 1132f1d73a7aSMatthew G. Knepley 1133ed808b8fSJed Brown Not Collective 1134ed808b8fSJed Brown 1135f1d73a7aSMatthew G. Knepley Input Parameters: 1136a1cb98faSBarry Smith + dm - The `DM` 1137f1d73a7aSMatthew G. Knepley . insertEssential - Should I insert essential (e.g. Dirichlet) or inessential (e.g. Neumann) boundary conditions 1138f1d73a7aSMatthew G. Knepley . time - The time 1139f1d73a7aSMatthew G. Knepley . faceGeomFVM - Face geometry data for FV discretizations 1140f1d73a7aSMatthew G. Knepley . cellGeomFVM - Cell geometry data for FV discretizations 1141f1d73a7aSMatthew G. Knepley - gradFVM - Gradient reconstruction data for FV discretizations 1142f1d73a7aSMatthew G. Knepley 11432fe279fdSBarry Smith Output Parameter: 1144f1d73a7aSMatthew G. Knepley . locX - Solution updated with boundary values 1145f1d73a7aSMatthew G. Knepley 1146ed808b8fSJed Brown Level: intermediate 1147f1d73a7aSMatthew G. Knepley 11481cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMProjectFunctionLabelLocal()`, `DMAddBoundary()` 1149f1d73a7aSMatthew G. Knepley @*/ 1150d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexInsertBoundaryValues(DM dm, PetscBool insertEssential, Vec locX, PetscReal time, Vec faceGeomFVM, Vec cellGeomFVM, Vec gradFVM) 1151d71ae5a4SJacob Faibussowitsch { 1152f1d73a7aSMatthew G. Knepley PetscFunctionBegin; 1153f1d73a7aSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 1154064a246eSJacob Faibussowitsch PetscValidHeaderSpecific(locX, VEC_CLASSID, 3); 1155ad540459SPierre Jolivet if (faceGeomFVM) PetscValidHeaderSpecific(faceGeomFVM, VEC_CLASSID, 5); 1156ad540459SPierre Jolivet if (cellGeomFVM) PetscValidHeaderSpecific(cellGeomFVM, VEC_CLASSID, 6); 1157ad540459SPierre Jolivet if (gradFVM) PetscValidHeaderSpecific(gradFVM, VEC_CLASSID, 7); 1158cac4c232SBarry Smith PetscTryMethod(dm, "DMPlexInsertBoundaryValues_C", (DM, PetscBool, Vec, PetscReal, Vec, Vec, Vec), (dm, insertEssential, locX, time, faceGeomFVM, cellGeomFVM, gradFVM)); 11593ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1160f1d73a7aSMatthew G. Knepley } 1161f1d73a7aSMatthew G. Knepley 116256cf3b9cSMatthew G. Knepley /*@ 1163a5b23f4aSJose E. Roman DMPlexInsertTimeDerivativeBoundaryValues - Puts coefficients which represent boundary values of the time derivative into the local solution vector 116456cf3b9cSMatthew G. Knepley 116556cf3b9cSMatthew G. Knepley Input Parameters: 1166a1cb98faSBarry Smith + dm - The `DM` 116756cf3b9cSMatthew G. Knepley . insertEssential - Should I insert essential (e.g. Dirichlet) or inessential (e.g. Neumann) boundary conditions 116856cf3b9cSMatthew G. Knepley . time - The time 116956cf3b9cSMatthew G. Knepley . faceGeomFVM - Face geometry data for FV discretizations 117056cf3b9cSMatthew G. Knepley . cellGeomFVM - Cell geometry data for FV discretizations 117156cf3b9cSMatthew G. Knepley - gradFVM - Gradient reconstruction data for FV discretizations 117256cf3b9cSMatthew G. Knepley 11732fe279fdSBarry Smith Output Parameter: 117456cf3b9cSMatthew G. Knepley . locX_t - Solution updated with boundary values 117556cf3b9cSMatthew G. Knepley 117656cf3b9cSMatthew G. Knepley Level: developer 117756cf3b9cSMatthew G. Knepley 11781cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMProjectFunctionLabelLocal()` 117956cf3b9cSMatthew G. Knepley @*/ 1180d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexInsertTimeDerivativeBoundaryValues(DM dm, PetscBool insertEssential, Vec locX_t, PetscReal time, Vec faceGeomFVM, Vec cellGeomFVM, Vec gradFVM) 1181d71ae5a4SJacob Faibussowitsch { 118256cf3b9cSMatthew G. Knepley PetscFunctionBegin; 118356cf3b9cSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 1184ad540459SPierre Jolivet if (locX_t) PetscValidHeaderSpecific(locX_t, VEC_CLASSID, 3); 1185ad540459SPierre Jolivet if (faceGeomFVM) PetscValidHeaderSpecific(faceGeomFVM, VEC_CLASSID, 5); 1186ad540459SPierre Jolivet if (cellGeomFVM) PetscValidHeaderSpecific(cellGeomFVM, VEC_CLASSID, 6); 1187ad540459SPierre Jolivet if (gradFVM) PetscValidHeaderSpecific(gradFVM, VEC_CLASSID, 7); 1188cac4c232SBarry Smith PetscTryMethod(dm, "DMPlexInsertTimeDerviativeBoundaryValues_C", (DM, PetscBool, Vec, PetscReal, Vec, Vec, Vec), (dm, insertEssential, locX_t, time, faceGeomFVM, cellGeomFVM, gradFVM)); 11893ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 119056cf3b9cSMatthew G. Knepley } 119156cf3b9cSMatthew G. Knepley 1192d71ae5a4SJacob Faibussowitsch PetscErrorCode DMComputeL2Diff_Plex(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal[], PetscInt, PetscScalar *, void *), void **ctxs, Vec X, PetscReal *diff) 1193d71ae5a4SJacob Faibussowitsch { 1194574a98acSMatthew G. Knepley Vec localX; 1195574a98acSMatthew G. Knepley 1196574a98acSMatthew G. Knepley PetscFunctionBegin; 11979566063dSJacob Faibussowitsch PetscCall(DMGetLocalVector(dm, &localX)); 11989566063dSJacob Faibussowitsch PetscCall(DMPlexInsertBoundaryValues(dm, PETSC_TRUE, localX, time, NULL, NULL, NULL)); 11999566063dSJacob Faibussowitsch PetscCall(DMGlobalToLocalBegin(dm, X, INSERT_VALUES, localX)); 12009566063dSJacob Faibussowitsch PetscCall(DMGlobalToLocalEnd(dm, X, INSERT_VALUES, localX)); 12019566063dSJacob Faibussowitsch PetscCall(DMPlexComputeL2DiffLocal(dm, time, funcs, ctxs, localX, diff)); 12029566063dSJacob Faibussowitsch PetscCall(DMRestoreLocalVector(dm, &localX)); 12033ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1204574a98acSMatthew G. Knepley } 1205574a98acSMatthew G. Knepley 1206574a98acSMatthew G. Knepley /*@C 120760225df5SJacob Faibussowitsch DMPlexComputeL2DiffLocal - This function computes the L_2 difference between a function u and an FEM interpolant solution u_h. 1208574a98acSMatthew G. Knepley 120920f4b53cSBarry Smith Collective 1210c0f8e1fdSMatthew G. Knepley 1211574a98acSMatthew G. Knepley Input Parameters: 1212a1cb98faSBarry Smith + dm - The `DM` 1213574a98acSMatthew G. Knepley . time - The time 1214574a98acSMatthew G. Knepley . funcs - The functions to evaluate for each field component 121520f4b53cSBarry Smith . ctxs - Optional array of contexts to pass to each function, or `NULL`. 1216574a98acSMatthew G. Knepley - localX - The coefficient vector u_h, a local vector 1217574a98acSMatthew G. Knepley 1218574a98acSMatthew G. Knepley Output Parameter: 1219574a98acSMatthew G. Knepley . diff - The diff ||u - u_h||_2 1220574a98acSMatthew G. Knepley 1221574a98acSMatthew G. Knepley Level: developer 1222574a98acSMatthew G. Knepley 12231cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMProjectFunction()`, `DMComputeL2FieldDiff()`, `DMComputeL2GradientDiff()` 1224574a98acSMatthew G. Knepley @*/ 1225d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeL2DiffLocal(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal[], PetscInt, PetscScalar *, void *), void **ctxs, Vec localX, PetscReal *diff) 1226d71ae5a4SJacob Faibussowitsch { 12270f09c10fSMatthew G. Knepley const PetscInt debug = ((DM_Plex *)dm->data)->printL2; 1228ca3d3a14SMatthew G. Knepley DM tdm; 1229ca3d3a14SMatthew G. Knepley Vec tv; 1230cb1e1211SMatthew G Knepley PetscSection section; 1231c5bbbd5bSMatthew G. Knepley PetscQuadrature quad; 12324bee2e38SMatthew G. Knepley PetscFEGeom fegeom; 123315496722SMatthew G. Knepley PetscScalar *funcVal, *interpolant; 12344bee2e38SMatthew G. Knepley PetscReal *coords, *gcoords; 1235cb1e1211SMatthew G Knepley PetscReal localDiff = 0.0; 12367318780aSToby Isaac const PetscReal *quadWeights; 1237412e9a14SMatthew G. Knepley PetscInt dim, coordDim, numFields, numComponents = 0, qNc, Nq, cellHeight, cStart, cEnd, c, field, fieldOffset; 1238ca3d3a14SMatthew G. Knepley PetscBool transform; 1239cb1e1211SMatthew G Knepley 1240cb1e1211SMatthew G Knepley PetscFunctionBegin; 12419566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 12429566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDim(dm, &coordDim)); 12432a4e142eSMatthew G. Knepley fegeom.dimEmbed = coordDim; 12449566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, §ion)); 12459566063dSJacob Faibussowitsch PetscCall(PetscSectionGetNumFields(section, &numFields)); 12469566063dSJacob Faibussowitsch PetscCall(DMGetBasisTransformDM_Internal(dm, &tdm)); 12479566063dSJacob Faibussowitsch PetscCall(DMGetBasisTransformVec_Internal(dm, &tv)); 12489566063dSJacob Faibussowitsch PetscCall(DMHasBasisTransform(dm, &transform)); 1249eae3dc7dSJacob Faibussowitsch PetscCheck(numFields, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of fields is zero!"); 1250cb1e1211SMatthew G Knepley for (field = 0; field < numFields; ++field) { 125115496722SMatthew G. Knepley PetscObject obj; 125215496722SMatthew G. Knepley PetscClassId id; 1253c5bbbd5bSMatthew G. Knepley PetscInt Nc; 1254c5bbbd5bSMatthew G. Knepley 12559566063dSJacob Faibussowitsch PetscCall(DMGetField(dm, field, NULL, &obj)); 12569566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 125715496722SMatthew G. Knepley if (id == PETSCFE_CLASSID) { 125815496722SMatthew G. Knepley PetscFE fe = (PetscFE)obj; 125915496722SMatthew G. Knepley 12609566063dSJacob Faibussowitsch PetscCall(PetscFEGetQuadrature(fe, &quad)); 12619566063dSJacob Faibussowitsch PetscCall(PetscFEGetNumComponents(fe, &Nc)); 126215496722SMatthew G. Knepley } else if (id == PETSCFV_CLASSID) { 126315496722SMatthew G. Knepley PetscFV fv = (PetscFV)obj; 126415496722SMatthew G. Knepley 12659566063dSJacob Faibussowitsch PetscCall(PetscFVGetQuadrature(fv, &quad)); 12669566063dSJacob Faibussowitsch PetscCall(PetscFVGetNumComponents(fv, &Nc)); 126763a3b9bcSJacob Faibussowitsch } else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, field); 1268c5bbbd5bSMatthew G. Knepley numComponents += Nc; 1269cb1e1211SMatthew G Knepley } 12709566063dSJacob Faibussowitsch PetscCall(PetscQuadratureGetData(quad, NULL, &qNc, &Nq, NULL, &quadWeights)); 127163a3b9bcSJacob Faibussowitsch PetscCheck(!(qNc != 1) || !(qNc != numComponents), PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_SIZ, "Quadrature components %" PetscInt_FMT " != %" PetscInt_FMT " field components", qNc, numComponents); 1272c9cb6370SYANG Zongze PetscCall(PetscMalloc6(numComponents, &funcVal, numComponents, &interpolant, coordDim * (Nq + 1), &coords, Nq, &fegeom.detJ, coordDim * coordDim * Nq, &fegeom.J, coordDim * coordDim * Nq, &fegeom.invJ)); 12739566063dSJacob Faibussowitsch PetscCall(DMPlexGetVTKCellHeight(dm, &cellHeight)); 12749566063dSJacob Faibussowitsch PetscCall(DMPlexGetSimplexOrBoxCells(dm, cellHeight, &cStart, &cEnd)); 1275cb1e1211SMatthew G Knepley for (c = cStart; c < cEnd; ++c) { 1276a1e44745SMatthew G. Knepley PetscScalar *x = NULL; 1277cb1e1211SMatthew G Knepley PetscReal elemDiff = 0.0; 12789c3cf19fSMatthew G. Knepley PetscInt qc = 0; 1279cb1e1211SMatthew G Knepley 12809566063dSJacob Faibussowitsch PetscCall(DMPlexComputeCellGeometryFEM(dm, c, quad, coords, fegeom.J, fegeom.invJ, fegeom.detJ)); 12819566063dSJacob Faibussowitsch PetscCall(DMPlexVecGetClosure(dm, NULL, localX, c, NULL, &x)); 1282cb1e1211SMatthew G Knepley 128315496722SMatthew G. Knepley for (field = 0, fieldOffset = 0; field < numFields; ++field) { 128415496722SMatthew G. Knepley PetscObject obj; 128515496722SMatthew G. Knepley PetscClassId id; 1286c110b1eeSGeoffrey Irving void *const ctx = ctxs ? ctxs[field] : NULL; 128715496722SMatthew G. Knepley PetscInt Nb, Nc, q, fc; 1288cb1e1211SMatthew G Knepley 12899566063dSJacob Faibussowitsch PetscCall(DMGetField(dm, field, NULL, &obj)); 12909566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 12919371c9d4SSatish Balay if (id == PETSCFE_CLASSID) { 12929371c9d4SSatish Balay PetscCall(PetscFEGetNumComponents((PetscFE)obj, &Nc)); 12939371c9d4SSatish Balay PetscCall(PetscFEGetDimension((PetscFE)obj, &Nb)); 12949371c9d4SSatish Balay } else if (id == PETSCFV_CLASSID) { 12959371c9d4SSatish Balay PetscCall(PetscFVGetNumComponents((PetscFV)obj, &Nc)); 12969371c9d4SSatish Balay Nb = 1; 12979371c9d4SSatish Balay } else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, field); 1298cb1e1211SMatthew G Knepley if (debug) { 1299cb1e1211SMatthew G Knepley char title[1024]; 130063a3b9bcSJacob Faibussowitsch PetscCall(PetscSNPrintf(title, 1023, "Solution for Field %" PetscInt_FMT, field)); 13019566063dSJacob Faibussowitsch PetscCall(DMPrintCellVector(c, title, Nb, &x[fieldOffset])); 1302cb1e1211SMatthew G Knepley } 13037318780aSToby Isaac for (q = 0; q < Nq; ++q) { 13042a4e142eSMatthew G. Knepley PetscFEGeom qgeom; 1305d0609cedSBarry Smith PetscErrorCode ierr; 13062a4e142eSMatthew G. Knepley 13072a4e142eSMatthew G. Knepley qgeom.dimEmbed = fegeom.dimEmbed; 13082a4e142eSMatthew G. Knepley qgeom.J = &fegeom.J[q * coordDim * coordDim]; 13092a4e142eSMatthew G. Knepley qgeom.invJ = &fegeom.invJ[q * coordDim * coordDim]; 13102a4e142eSMatthew G. Knepley qgeom.detJ = &fegeom.detJ[q]; 131163a3b9bcSJacob Faibussowitsch PetscCheck(fegeom.detJ[q] > 0.0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Invalid determinant %g for element %" PetscInt_FMT ", point %" PetscInt_FMT, (double)fegeom.detJ[q], c, q); 1312d3a7d86cSMatthew G. Knepley if (transform) { 1313d3a7d86cSMatthew G. Knepley gcoords = &coords[coordDim * Nq]; 13149566063dSJacob Faibussowitsch PetscCall(DMPlexBasisTransformApplyReal_Internal(dm, &coords[coordDim * q], PETSC_TRUE, coordDim, &coords[coordDim * q], gcoords, dm->transformCtx)); 1315d3a7d86cSMatthew G. Knepley } else { 1316d3a7d86cSMatthew G. Knepley gcoords = &coords[coordDim * q]; 1317d3a7d86cSMatthew G. Knepley } 13189566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(funcVal, Nc)); 1319ca3d3a14SMatthew G. Knepley ierr = (*funcs[field])(coordDim, time, gcoords, Nc, funcVal, ctx); 1320e735a8a9SMatthew G. Knepley if (ierr) { 13219566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(dm, NULL, localX, c, NULL, &x)); 13229566063dSJacob Faibussowitsch PetscCall(DMRestoreLocalVector(dm, &localX)); 13239566063dSJacob Faibussowitsch PetscCall(PetscFree6(funcVal, interpolant, coords, fegeom.detJ, fegeom.J, fegeom.invJ)); 1324e735a8a9SMatthew G. Knepley } 13259566063dSJacob Faibussowitsch if (transform) PetscCall(DMPlexBasisTransformApply_Internal(dm, &coords[coordDim * q], PETSC_FALSE, Nc, funcVal, funcVal, dm->transformCtx)); 13269566063dSJacob Faibussowitsch if (id == PETSCFE_CLASSID) PetscCall(PetscFEInterpolate_Static((PetscFE)obj, &x[fieldOffset], &qgeom, q, interpolant)); 13279566063dSJacob Faibussowitsch else if (id == PETSCFV_CLASSID) PetscCall(PetscFVInterpolate_Static((PetscFV)obj, &x[fieldOffset], q, interpolant)); 13282df84da0SMatthew G. Knepley else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, field); 132915496722SMatthew G. Knepley for (fc = 0; fc < Nc; ++fc) { 1330beaa55a6SMatthew G. Knepley const PetscReal wt = quadWeights[q * qNc + (qNc == 1 ? 0 : qc + fc)]; 13319371c9d4SSatish Balay if (debug) 13329371c9d4SSatish Balay PetscCall(PetscPrintf(PETSC_COMM_SELF, " elem %" PetscInt_FMT " field %" PetscInt_FMT ",%" PetscInt_FMT " point %g %g %g diff %g (%g, %g)\n", c, field, fc, (double)(coordDim > 0 ? coords[coordDim * q] : 0.), (double)(coordDim > 1 ? coords[coordDim * q + 1] : 0.), (double)(coordDim > 2 ? coords[coordDim * q + 2] : 0.), 13339371c9d4SSatish Balay (double)(PetscSqr(PetscRealPart(interpolant[fc] - funcVal[fc])) * wt * fegeom.detJ[q]), (double)PetscRealPart(interpolant[fc]), (double)PetscRealPart(funcVal[fc]))); 13344bee2e38SMatthew G. Knepley elemDiff += PetscSqr(PetscRealPart(interpolant[fc] - funcVal[fc])) * wt * fegeom.detJ[q]; 1335cb1e1211SMatthew G Knepley } 1336cb1e1211SMatthew G Knepley } 13379c3cf19fSMatthew G. Knepley fieldOffset += Nb; 1338beaa55a6SMatthew G. Knepley qc += Nc; 1339cb1e1211SMatthew G Knepley } 13409566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(dm, NULL, localX, c, NULL, &x)); 13419566063dSJacob Faibussowitsch if (debug) PetscCall(PetscPrintf(PETSC_COMM_SELF, " elem %" PetscInt_FMT " diff %g\n", c, (double)elemDiff)); 1342cb1e1211SMatthew G Knepley localDiff += elemDiff; 1343cb1e1211SMatthew G Knepley } 13449566063dSJacob Faibussowitsch PetscCall(PetscFree6(funcVal, interpolant, coords, fegeom.detJ, fegeom.J, fegeom.invJ)); 13451c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&localDiff, diff, 1, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)dm))); 1346cb1e1211SMatthew G Knepley *diff = PetscSqrtReal(*diff); 13473ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1348cb1e1211SMatthew G Knepley } 1349cb1e1211SMatthew G Knepley 1350d71ae5a4SJacob Faibussowitsch PetscErrorCode DMComputeL2GradientDiff_Plex(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal[], const PetscReal[], PetscInt, PetscScalar *, void *), void **ctxs, Vec X, const PetscReal n[], PetscReal *diff) 1351d71ae5a4SJacob Faibussowitsch { 13520f09c10fSMatthew G. Knepley const PetscInt debug = ((DM_Plex *)dm->data)->printL2; 1353ca3d3a14SMatthew G. Knepley DM tdm; 1354cb1e1211SMatthew G Knepley PetscSection section; 135540e14135SMatthew G. Knepley PetscQuadrature quad; 1356ca3d3a14SMatthew G. Knepley Vec localX, tv; 13579c3cf19fSMatthew G. Knepley PetscScalar *funcVal, *interpolant; 13582a4e142eSMatthew G. Knepley const PetscReal *quadWeights; 13594bee2e38SMatthew G. Knepley PetscFEGeom fegeom; 13604bee2e38SMatthew G. Knepley PetscReal *coords, *gcoords; 136140e14135SMatthew G. Knepley PetscReal localDiff = 0.0; 1362485ad865SMatthew G. Knepley PetscInt dim, coordDim, qNc = 0, Nq = 0, numFields, numComponents = 0, cStart, cEnd, c, field, fieldOffset; 1363ca3d3a14SMatthew G. Knepley PetscBool transform; 1364cb1e1211SMatthew G Knepley 1365cb1e1211SMatthew G Knepley PetscFunctionBegin; 13669566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 13679566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDim(dm, &coordDim)); 13684bee2e38SMatthew G. Knepley fegeom.dimEmbed = coordDim; 13699566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, §ion)); 13709566063dSJacob Faibussowitsch PetscCall(PetscSectionGetNumFields(section, &numFields)); 13719566063dSJacob Faibussowitsch PetscCall(DMGetLocalVector(dm, &localX)); 13729566063dSJacob Faibussowitsch PetscCall(DMGlobalToLocalBegin(dm, X, INSERT_VALUES, localX)); 13739566063dSJacob Faibussowitsch PetscCall(DMGlobalToLocalEnd(dm, X, INSERT_VALUES, localX)); 13749566063dSJacob Faibussowitsch PetscCall(DMGetBasisTransformDM_Internal(dm, &tdm)); 13759566063dSJacob Faibussowitsch PetscCall(DMGetBasisTransformVec_Internal(dm, &tv)); 13769566063dSJacob Faibussowitsch PetscCall(DMHasBasisTransform(dm, &transform)); 1377652b88e8SMatthew G. Knepley for (field = 0; field < numFields; ++field) { 13780f2d7e86SMatthew G. Knepley PetscFE fe; 137940e14135SMatthew G. Knepley PetscInt Nc; 1380652b88e8SMatthew G. Knepley 13819566063dSJacob Faibussowitsch PetscCall(DMGetField(dm, field, NULL, (PetscObject *)&fe)); 13829566063dSJacob Faibussowitsch PetscCall(PetscFEGetQuadrature(fe, &quad)); 13839566063dSJacob Faibussowitsch PetscCall(PetscFEGetNumComponents(fe, &Nc)); 138440e14135SMatthew G. Knepley numComponents += Nc; 1385652b88e8SMatthew G. Knepley } 13869566063dSJacob Faibussowitsch PetscCall(PetscQuadratureGetData(quad, NULL, &qNc, &Nq, NULL, &quadWeights)); 138763a3b9bcSJacob Faibussowitsch PetscCheck(!(qNc != 1) || !(qNc != numComponents), PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_SIZ, "Quadrature components %" PetscInt_FMT " != %" PetscInt_FMT " field components", qNc, numComponents); 13889566063dSJacob Faibussowitsch /* PetscCall(DMProjectFunctionLocal(dm, fe, funcs, INSERT_BC_VALUES, localX)); */ 1389c9cb6370SYANG Zongze PetscCall(PetscMalloc6(numComponents, &funcVal, coordDim * (Nq + 1), &coords, coordDim * coordDim * Nq, &fegeom.J, coordDim * coordDim * Nq, &fegeom.invJ, numComponents * coordDim, &interpolant, Nq, &fegeom.detJ)); 13909566063dSJacob Faibussowitsch PetscCall(DMPlexGetSimplexOrBoxCells(dm, 0, &cStart, &cEnd)); 139140e14135SMatthew G. Knepley for (c = cStart; c < cEnd; ++c) { 139240e14135SMatthew G. Knepley PetscScalar *x = NULL; 139340e14135SMatthew G. Knepley PetscReal elemDiff = 0.0; 13949c3cf19fSMatthew G. Knepley PetscInt qc = 0; 1395652b88e8SMatthew G. Knepley 13969566063dSJacob Faibussowitsch PetscCall(DMPlexComputeCellGeometryFEM(dm, c, quad, coords, fegeom.J, fegeom.invJ, fegeom.detJ)); 13979566063dSJacob Faibussowitsch PetscCall(DMPlexVecGetClosure(dm, NULL, localX, c, NULL, &x)); 139840e14135SMatthew G. Knepley 13999c3cf19fSMatthew G. Knepley for (field = 0, fieldOffset = 0; field < numFields; ++field) { 14000f2d7e86SMatthew G. Knepley PetscFE fe; 140151259fa3SMatthew G. Knepley void *const ctx = ctxs ? ctxs[field] : NULL; 14029c3cf19fSMatthew G. Knepley PetscInt Nb, Nc, q, fc; 140340e14135SMatthew G. Knepley 14049566063dSJacob Faibussowitsch PetscCall(DMGetField(dm, field, NULL, (PetscObject *)&fe)); 14059566063dSJacob Faibussowitsch PetscCall(PetscFEGetDimension(fe, &Nb)); 14069566063dSJacob Faibussowitsch PetscCall(PetscFEGetNumComponents(fe, &Nc)); 140740e14135SMatthew G. Knepley if (debug) { 140840e14135SMatthew G. Knepley char title[1024]; 14099566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(title, 1023, "Solution for Field %" PetscInt_FMT, field)); 14109566063dSJacob Faibussowitsch PetscCall(DMPrintCellVector(c, title, Nb, &x[fieldOffset])); 1411652b88e8SMatthew G. Knepley } 14129c3cf19fSMatthew G. Knepley for (q = 0; q < Nq; ++q) { 14132a4e142eSMatthew G. Knepley PetscFEGeom qgeom; 1414d0609cedSBarry Smith PetscErrorCode ierr; 14152a4e142eSMatthew G. Knepley 14162a4e142eSMatthew G. Knepley qgeom.dimEmbed = fegeom.dimEmbed; 14172a4e142eSMatthew G. Knepley qgeom.J = &fegeom.J[q * coordDim * coordDim]; 14182a4e142eSMatthew G. Knepley qgeom.invJ = &fegeom.invJ[q * coordDim * coordDim]; 14192a4e142eSMatthew G. Knepley qgeom.detJ = &fegeom.detJ[q]; 14202df84da0SMatthew G. Knepley PetscCheck(fegeom.detJ[q] > 0.0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Invalid determinant %g for element %" PetscInt_FMT ", quadrature points %" PetscInt_FMT, (double)fegeom.detJ[q], c, q); 1421d3a7d86cSMatthew G. Knepley if (transform) { 1422d3a7d86cSMatthew G. Knepley gcoords = &coords[coordDim * Nq]; 14239566063dSJacob Faibussowitsch PetscCall(DMPlexBasisTransformApplyReal_Internal(dm, &coords[coordDim * q], PETSC_TRUE, coordDim, &coords[coordDim * q], gcoords, dm->transformCtx)); 1424d3a7d86cSMatthew G. Knepley } else { 1425d3a7d86cSMatthew G. Knepley gcoords = &coords[coordDim * q]; 1426d3a7d86cSMatthew G. Knepley } 14279566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(funcVal, Nc)); 14284bee2e38SMatthew G. Knepley ierr = (*funcs[field])(coordDim, time, gcoords, n, Nc, funcVal, ctx); 1429e735a8a9SMatthew G. Knepley if (ierr) { 14309566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(dm, NULL, localX, c, NULL, &x)); 14319566063dSJacob Faibussowitsch PetscCall(DMRestoreLocalVector(dm, &localX)); 14329566063dSJacob Faibussowitsch PetscCall(PetscFree6(funcVal, coords, fegeom.J, fegeom.invJ, interpolant, fegeom.detJ)); 1433e735a8a9SMatthew G. Knepley } 14349566063dSJacob Faibussowitsch if (transform) PetscCall(DMPlexBasisTransformApply_Internal(dm, &coords[coordDim * q], PETSC_FALSE, Nc, funcVal, funcVal, dm->transformCtx)); 14359566063dSJacob Faibussowitsch PetscCall(PetscFEInterpolateGradient_Static(fe, 1, &x[fieldOffset], &qgeom, q, interpolant)); 14364bee2e38SMatthew G. Knepley /* Overwrite with the dot product if the normal is given */ 14374bee2e38SMatthew G. Knepley if (n) { 14384bee2e38SMatthew G. Knepley for (fc = 0; fc < Nc; ++fc) { 14394bee2e38SMatthew G. Knepley PetscScalar sum = 0.0; 14404bee2e38SMatthew G. Knepley PetscInt d; 14414bee2e38SMatthew G. Knepley for (d = 0; d < dim; ++d) sum += interpolant[fc * dim + d] * n[d]; 14424bee2e38SMatthew G. Knepley interpolant[fc] = sum; 14434bee2e38SMatthew G. Knepley } 14444bee2e38SMatthew G. Knepley } 14459c3cf19fSMatthew G. Knepley for (fc = 0; fc < Nc; ++fc) { 1446beaa55a6SMatthew G. Knepley const PetscReal wt = quadWeights[q * qNc + (qNc == 1 ? 0 : qc + fc)]; 144763a3b9bcSJacob Faibussowitsch if (debug) PetscCall(PetscPrintf(PETSC_COMM_SELF, " elem %" PetscInt_FMT " fieldDer %" PetscInt_FMT ",%" PetscInt_FMT " diff %g\n", c, field, fc, (double)(PetscSqr(PetscRealPart(interpolant[fc] - funcVal[fc])) * wt * fegeom.detJ[q]))); 14484bee2e38SMatthew G. Knepley elemDiff += PetscSqr(PetscRealPart(interpolant[fc] - funcVal[fc])) * wt * fegeom.detJ[q]; 144940e14135SMatthew G. Knepley } 145040e14135SMatthew G. Knepley } 14519c3cf19fSMatthew G. Knepley fieldOffset += Nb; 14529c3cf19fSMatthew G. Knepley qc += Nc; 145340e14135SMatthew G. Knepley } 14549566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(dm, NULL, localX, c, NULL, &x)); 145563a3b9bcSJacob Faibussowitsch if (debug) PetscCall(PetscPrintf(PETSC_COMM_SELF, " elem %" PetscInt_FMT " diff %g\n", c, (double)elemDiff)); 145640e14135SMatthew G. Knepley localDiff += elemDiff; 145740e14135SMatthew G. Knepley } 14589566063dSJacob Faibussowitsch PetscCall(PetscFree6(funcVal, coords, fegeom.J, fegeom.invJ, interpolant, fegeom.detJ)); 14599566063dSJacob Faibussowitsch PetscCall(DMRestoreLocalVector(dm, &localX)); 14601c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&localDiff, diff, 1, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)dm))); 146140e14135SMatthew G. Knepley *diff = PetscSqrtReal(*diff); 14623ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1463cb1e1211SMatthew G Knepley } 1464cb1e1211SMatthew G Knepley 1465d71ae5a4SJacob Faibussowitsch PetscErrorCode DMComputeL2FieldDiff_Plex(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal[], PetscInt, PetscScalar *, void *), void **ctxs, Vec X, PetscReal *diff) 1466d71ae5a4SJacob Faibussowitsch { 14670f09c10fSMatthew G. Knepley const PetscInt debug = ((DM_Plex *)dm->data)->printL2; 1468ca3d3a14SMatthew G. Knepley DM tdm; 1469083401c6SMatthew G. Knepley DMLabel depthLabel; 147073d901b8SMatthew G. Knepley PetscSection section; 1471ca3d3a14SMatthew G. Knepley Vec localX, tv; 147273d901b8SMatthew G. Knepley PetscReal *localDiff; 1473083401c6SMatthew G. Knepley PetscInt dim, depth, dE, Nf, f, Nds, s; 1474ca3d3a14SMatthew G. Knepley PetscBool transform; 147573d901b8SMatthew G. Knepley 147673d901b8SMatthew G. Knepley PetscFunctionBegin; 14779566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 14789566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDim(dm, &dE)); 14799566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, §ion)); 14809566063dSJacob Faibussowitsch PetscCall(DMGetLocalVector(dm, &localX)); 14819566063dSJacob Faibussowitsch PetscCall(DMGetBasisTransformDM_Internal(dm, &tdm)); 14829566063dSJacob Faibussowitsch PetscCall(DMGetBasisTransformVec_Internal(dm, &tv)); 14839566063dSJacob Faibussowitsch PetscCall(DMHasBasisTransform(dm, &transform)); 14849566063dSJacob Faibussowitsch PetscCall(DMGetNumFields(dm, &Nf)); 14859566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthLabel(dm, &depthLabel)); 14869566063dSJacob Faibussowitsch PetscCall(DMLabelGetNumValues(depthLabel, &depth)); 1487083401c6SMatthew G. Knepley 14889566063dSJacob Faibussowitsch PetscCall(VecSet(localX, 0.0)); 14899566063dSJacob Faibussowitsch PetscCall(DMGlobalToLocalBegin(dm, X, INSERT_VALUES, localX)); 14909566063dSJacob Faibussowitsch PetscCall(DMGlobalToLocalEnd(dm, X, INSERT_VALUES, localX)); 14919566063dSJacob Faibussowitsch PetscCall(DMProjectFunctionLocal(dm, time, funcs, ctxs, INSERT_BC_VALUES, localX)); 14929566063dSJacob Faibussowitsch PetscCall(DMGetNumDS(dm, &Nds)); 14939566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(Nf, &localDiff)); 1494083401c6SMatthew G. Knepley for (s = 0; s < Nds; ++s) { 1495083401c6SMatthew G. Knepley PetscDS ds; 1496083401c6SMatthew G. Knepley DMLabel label; 1497083401c6SMatthew G. Knepley IS fieldIS, pointIS; 1498083401c6SMatthew G. Knepley const PetscInt *fields, *points = NULL; 1499083401c6SMatthew G. Knepley PetscQuadrature quad; 1500083401c6SMatthew G. Knepley const PetscReal *quadPoints, *quadWeights; 1501083401c6SMatthew G. Knepley PetscFEGeom fegeom; 1502083401c6SMatthew G. Knepley PetscReal *coords, *gcoords; 1503083401c6SMatthew G. Knepley PetscScalar *funcVal, *interpolant; 15045fedec97SMatthew G. Knepley PetscBool isCohesive; 1505083401c6SMatthew G. Knepley PetscInt qNc, Nq, totNc, cStart = 0, cEnd, c, dsNf; 150673d901b8SMatthew G. Knepley 150707218a29SMatthew G. Knepley PetscCall(DMGetRegionNumDS(dm, s, &label, &fieldIS, &ds, NULL)); 15089566063dSJacob Faibussowitsch PetscCall(ISGetIndices(fieldIS, &fields)); 15099566063dSJacob Faibussowitsch PetscCall(PetscDSIsCohesive(ds, &isCohesive)); 15109566063dSJacob Faibussowitsch PetscCall(PetscDSGetNumFields(ds, &dsNf)); 15119566063dSJacob Faibussowitsch PetscCall(PetscDSGetTotalComponents(ds, &totNc)); 15129566063dSJacob Faibussowitsch PetscCall(PetscDSGetQuadrature(ds, &quad)); 15139566063dSJacob Faibussowitsch PetscCall(PetscQuadratureGetData(quad, NULL, &qNc, &Nq, &quadPoints, &quadWeights)); 151463a3b9bcSJacob Faibussowitsch PetscCheck(!(qNc != 1) || !(qNc != totNc), PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Quadrature components %" PetscInt_FMT " != %" PetscInt_FMT " field components", qNc, totNc); 15159566063dSJacob Faibussowitsch PetscCall(PetscCalloc6(totNc, &funcVal, totNc, &interpolant, dE * (Nq + 1), &coords, Nq, &fegeom.detJ, dE * dE * Nq, &fegeom.J, dE * dE * Nq, &fegeom.invJ)); 1516083401c6SMatthew G. Knepley if (!label) { 15179566063dSJacob Faibussowitsch PetscCall(DMPlexGetSimplexOrBoxCells(dm, 0, &cStart, &cEnd)); 1518083401c6SMatthew G. Knepley } else { 15199566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(label, 1, &pointIS)); 15209566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(pointIS, &cEnd)); 15219566063dSJacob Faibussowitsch PetscCall(ISGetIndices(pointIS, &points)); 1522083401c6SMatthew G. Knepley } 152373d901b8SMatthew G. Knepley for (c = cStart; c < cEnd; ++c) { 1524083401c6SMatthew G. Knepley const PetscInt cell = points ? points[c] : c; 152573d901b8SMatthew G. Knepley PetscScalar *x = NULL; 15265fedec97SMatthew G. Knepley const PetscInt *cone; 15275fedec97SMatthew G. Knepley PetscInt qc = 0, fOff = 0, dep; 152873d901b8SMatthew G. Knepley 15299566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(depthLabel, cell, &dep)); 1530083401c6SMatthew G. Knepley if (dep != depth - 1) continue; 15315fedec97SMatthew G. Knepley if (isCohesive) { 15329566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, cell, &cone)); 15339566063dSJacob Faibussowitsch PetscCall(DMPlexComputeCellGeometryFEM(dm, cone[0], quad, coords, fegeom.J, fegeom.invJ, fegeom.detJ)); 153496959cd1SMatthew G. Knepley } else { 15359566063dSJacob Faibussowitsch PetscCall(DMPlexComputeCellGeometryFEM(dm, cell, quad, coords, fegeom.J, fegeom.invJ, fegeom.detJ)); 153696959cd1SMatthew G. Knepley } 15379566063dSJacob Faibussowitsch PetscCall(DMPlexVecGetClosure(dm, NULL, localX, cell, NULL, &x)); 15385fedec97SMatthew G. Knepley for (f = 0; f < dsNf; ++f) { 153915496722SMatthew G. Knepley PetscObject obj; 154015496722SMatthew G. Knepley PetscClassId id; 1541083401c6SMatthew G. Knepley void *const ctx = ctxs ? ctxs[fields[f]] : NULL; 154215496722SMatthew G. Knepley PetscInt Nb, Nc, q, fc; 154315496722SMatthew G. Knepley PetscReal elemDiff = 0.0; 15445fedec97SMatthew G. Knepley PetscBool cohesive; 154515496722SMatthew G. Knepley 15469566063dSJacob Faibussowitsch PetscCall(PetscDSGetCohesive(ds, f, &cohesive)); 15479566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(ds, f, &obj)); 15489566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 15499371c9d4SSatish Balay if (id == PETSCFE_CLASSID) { 15509371c9d4SSatish Balay PetscCall(PetscFEGetNumComponents((PetscFE)obj, &Nc)); 15519371c9d4SSatish Balay PetscCall(PetscFEGetDimension((PetscFE)obj, &Nb)); 15529371c9d4SSatish Balay } else if (id == PETSCFV_CLASSID) { 15539371c9d4SSatish Balay PetscCall(PetscFVGetNumComponents((PetscFV)obj, &Nc)); 15549371c9d4SSatish Balay Nb = 1; 15559371c9d4SSatish Balay } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, fields[f]); 1556c82db6dbSMatthew G. Knepley if (isCohesive && !cohesive) { 1557c82db6dbSMatthew G. Knepley fOff += Nb * 2; 1558c82db6dbSMatthew G. Knepley qc += Nc; 1559c82db6dbSMatthew G. Knepley continue; 1560c82db6dbSMatthew G. Knepley } 156173d901b8SMatthew G. Knepley if (debug) { 156273d901b8SMatthew G. Knepley char title[1024]; 156363a3b9bcSJacob Faibussowitsch PetscCall(PetscSNPrintf(title, 1023, "Solution for Field %" PetscInt_FMT, fields[f])); 15649566063dSJacob Faibussowitsch PetscCall(DMPrintCellVector(cell, title, Nb, &x[fOff])); 156573d901b8SMatthew G. Knepley } 15667318780aSToby Isaac for (q = 0; q < Nq; ++q) { 15672a4e142eSMatthew G. Knepley PetscFEGeom qgeom; 1568d0609cedSBarry Smith PetscErrorCode ierr; 15692a4e142eSMatthew G. Knepley 15702a4e142eSMatthew G. Knepley qgeom.dimEmbed = fegeom.dimEmbed; 1571083401c6SMatthew G. Knepley qgeom.J = &fegeom.J[q * dE * dE]; 1572083401c6SMatthew G. Knepley qgeom.invJ = &fegeom.invJ[q * dE * dE]; 15732a4e142eSMatthew G. Knepley qgeom.detJ = &fegeom.detJ[q]; 157463a3b9bcSJacob Faibussowitsch PetscCheck(fegeom.detJ[q] > 0.0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Invalid determinant %g for cell %" PetscInt_FMT ", quadrature point %" PetscInt_FMT, (double)fegeom.detJ[q], cell, q); 1575d3a7d86cSMatthew G. Knepley if (transform) { 1576083401c6SMatthew G. Knepley gcoords = &coords[dE * Nq]; 15779566063dSJacob Faibussowitsch PetscCall(DMPlexBasisTransformApplyReal_Internal(dm, &coords[dE * q], PETSC_TRUE, dE, &coords[dE * q], gcoords, dm->transformCtx)); 1578d3a7d86cSMatthew G. Knepley } else { 1579083401c6SMatthew G. Knepley gcoords = &coords[dE * q]; 1580d3a7d86cSMatthew G. Knepley } 15812df84da0SMatthew G. Knepley for (fc = 0; fc < Nc; ++fc) funcVal[fc] = 0.; 1582083401c6SMatthew G. Knepley ierr = (*funcs[fields[f]])(dE, time, gcoords, Nc, funcVal, ctx); 1583e735a8a9SMatthew G. Knepley if (ierr) { 15849566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(dm, NULL, localX, cell, NULL, &x)); 15859566063dSJacob Faibussowitsch PetscCall(DMRestoreLocalVector(dm, &localX)); 15869566063dSJacob Faibussowitsch PetscCall(PetscFree6(funcVal, interpolant, coords, fegeom.detJ, fegeom.J, fegeom.invJ)); 1587e735a8a9SMatthew G. Knepley } 15889566063dSJacob Faibussowitsch if (transform) PetscCall(DMPlexBasisTransformApply_Internal(dm, &coords[dE * q], PETSC_FALSE, Nc, funcVal, funcVal, dm->transformCtx)); 158996959cd1SMatthew G. Knepley /* Call once for each face, except for lagrange field */ 15909566063dSJacob Faibussowitsch if (id == PETSCFE_CLASSID) PetscCall(PetscFEInterpolate_Static((PetscFE)obj, &x[fOff], &qgeom, q, interpolant)); 15919566063dSJacob Faibussowitsch else if (id == PETSCFV_CLASSID) PetscCall(PetscFVInterpolate_Static((PetscFV)obj, &x[fOff], q, interpolant)); 159263a3b9bcSJacob Faibussowitsch else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, fields[f]); 159315496722SMatthew G. Knepley for (fc = 0; fc < Nc; ++fc) { 1594beaa55a6SMatthew G. Knepley const PetscReal wt = quadWeights[q * qNc + (qNc == 1 ? 0 : qc + fc)]; 15959371c9d4SSatish Balay if (debug) 15969371c9d4SSatish Balay PetscCall(PetscPrintf(PETSC_COMM_SELF, " cell %" PetscInt_FMT " field %" PetscInt_FMT ",%" PetscInt_FMT " point %g %g %g diff %g\n", cell, fields[f], fc, (double)(dE > 0 ? coords[dE * q] : 0.), (double)(dE > 1 ? coords[dE * q + 1] : 0.), (double)(dE > 2 ? coords[dE * q + 2] : 0.), 15979371c9d4SSatish Balay (double)(PetscSqr(PetscRealPart(interpolant[fc] - funcVal[fc])) * wt * fegeom.detJ[q]))); 15984bee2e38SMatthew G. Knepley elemDiff += PetscSqr(PetscRealPart(interpolant[fc] - funcVal[fc])) * wt * fegeom.detJ[q]; 159973d901b8SMatthew G. Knepley } 160073d901b8SMatthew G. Knepley } 1601083401c6SMatthew G. Knepley fOff += Nb; 16029c3cf19fSMatthew G. Knepley qc += Nc; 1603083401c6SMatthew G. Knepley localDiff[fields[f]] += elemDiff; 160463a3b9bcSJacob Faibussowitsch if (debug) PetscCall(PetscPrintf(PETSC_COMM_SELF, " cell %" PetscInt_FMT " field %" PetscInt_FMT " cum diff %g\n", cell, fields[f], (double)localDiff[fields[f]])); 160573d901b8SMatthew G. Knepley } 16069566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(dm, NULL, localX, cell, NULL, &x)); 1607083401c6SMatthew G. Knepley } 1608083401c6SMatthew G. Knepley if (label) { 16099566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(pointIS, &points)); 16109566063dSJacob Faibussowitsch PetscCall(ISDestroy(&pointIS)); 1611083401c6SMatthew G. Knepley } 16129566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(fieldIS, &fields)); 16139566063dSJacob Faibussowitsch PetscCall(PetscFree6(funcVal, interpolant, coords, fegeom.detJ, fegeom.J, fegeom.invJ)); 161473d901b8SMatthew G. Knepley } 16159566063dSJacob Faibussowitsch PetscCall(DMRestoreLocalVector(dm, &localX)); 16161c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(localDiff, diff, Nf, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)dm))); 16179566063dSJacob Faibussowitsch PetscCall(PetscFree(localDiff)); 1618083401c6SMatthew G. Knepley for (f = 0; f < Nf; ++f) diff[f] = PetscSqrtReal(diff[f]); 16193ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 162073d901b8SMatthew G. Knepley } 162173d901b8SMatthew G. Knepley 1622e729f68cSMatthew G. Knepley /*@C 1623e729f68cSMatthew G. Knepley DMPlexComputeL2DiffVec - This function computes the cellwise L_2 difference between a function u and an FEM interpolant solution u_h, and stores it in a Vec. 1624e729f68cSMatthew G. Knepley 162520f4b53cSBarry Smith Collective 1626c0f8e1fdSMatthew G. Knepley 1627e729f68cSMatthew G. Knepley Input Parameters: 1628a1cb98faSBarry Smith + dm - The `DM` 16290163fd50SMatthew G. Knepley . time - The time 163020f4b53cSBarry Smith . funcs - The functions to evaluate for each field component: `NULL` means that component does not contribute to error calculation 163120f4b53cSBarry Smith . ctxs - Optional array of contexts to pass to each function, or `NULL`. 1632e729f68cSMatthew G. Knepley - X - The coefficient vector u_h 1633e729f68cSMatthew G. Knepley 1634e729f68cSMatthew G. Knepley Output Parameter: 163520f4b53cSBarry Smith . D - A `Vec` which holds the difference ||u - u_h||_2 for each cell 1636e729f68cSMatthew G. Knepley 1637e729f68cSMatthew G. Knepley Level: developer 1638e729f68cSMatthew G. Knepley 16391cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMProjectFunction()`, `DMComputeL2Diff()`, `DMPlexComputeL2FieldDiff()`, `DMComputeL2GradientDiff()` 1640e729f68cSMatthew G. Knepley @*/ 1641d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeL2DiffVec(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal[], PetscInt, PetscScalar *, void *), void **ctxs, Vec X, Vec D) 1642d71ae5a4SJacob Faibussowitsch { 1643e729f68cSMatthew G. Knepley PetscSection section; 1644e729f68cSMatthew G. Knepley PetscQuadrature quad; 1645e729f68cSMatthew G. Knepley Vec localX; 16464bee2e38SMatthew G. Knepley PetscFEGeom fegeom; 1647e729f68cSMatthew G. Knepley PetscScalar *funcVal, *interpolant; 16484bee2e38SMatthew G. Knepley PetscReal *coords; 1649e729f68cSMatthew G. Knepley const PetscReal *quadPoints, *quadWeights; 1650485ad865SMatthew G. Knepley PetscInt dim, coordDim, numFields, numComponents = 0, qNc, Nq, cStart, cEnd, c, field, fieldOffset; 1651e729f68cSMatthew G. Knepley 1652e729f68cSMatthew G. Knepley PetscFunctionBegin; 16539566063dSJacob Faibussowitsch PetscCall(VecSet(D, 0.0)); 16549566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 16559566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDim(dm, &coordDim)); 16569566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, §ion)); 16579566063dSJacob Faibussowitsch PetscCall(PetscSectionGetNumFields(section, &numFields)); 16589566063dSJacob Faibussowitsch PetscCall(DMGetLocalVector(dm, &localX)); 16599566063dSJacob Faibussowitsch PetscCall(DMProjectFunctionLocal(dm, time, funcs, ctxs, INSERT_BC_VALUES, localX)); 16609566063dSJacob Faibussowitsch PetscCall(DMGlobalToLocalBegin(dm, X, INSERT_VALUES, localX)); 16619566063dSJacob Faibussowitsch PetscCall(DMGlobalToLocalEnd(dm, X, INSERT_VALUES, localX)); 1662e729f68cSMatthew G. Knepley for (field = 0; field < numFields; ++field) { 1663e729f68cSMatthew G. Knepley PetscObject obj; 1664e729f68cSMatthew G. Knepley PetscClassId id; 1665e729f68cSMatthew G. Knepley PetscInt Nc; 1666e729f68cSMatthew G. Knepley 16679566063dSJacob Faibussowitsch PetscCall(DMGetField(dm, field, NULL, &obj)); 16689566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 1669e729f68cSMatthew G. Knepley if (id == PETSCFE_CLASSID) { 1670e729f68cSMatthew G. Knepley PetscFE fe = (PetscFE)obj; 1671e729f68cSMatthew G. Knepley 16729566063dSJacob Faibussowitsch PetscCall(PetscFEGetQuadrature(fe, &quad)); 16739566063dSJacob Faibussowitsch PetscCall(PetscFEGetNumComponents(fe, &Nc)); 1674e729f68cSMatthew G. Knepley } else if (id == PETSCFV_CLASSID) { 1675e729f68cSMatthew G. Knepley PetscFV fv = (PetscFV)obj; 1676e729f68cSMatthew G. Knepley 16779566063dSJacob Faibussowitsch PetscCall(PetscFVGetQuadrature(fv, &quad)); 16789566063dSJacob Faibussowitsch PetscCall(PetscFVGetNumComponents(fv, &Nc)); 167963a3b9bcSJacob Faibussowitsch } else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, field); 1680e729f68cSMatthew G. Knepley numComponents += Nc; 1681e729f68cSMatthew G. Knepley } 16829566063dSJacob Faibussowitsch PetscCall(PetscQuadratureGetData(quad, NULL, &qNc, &Nq, &quadPoints, &quadWeights)); 168363a3b9bcSJacob Faibussowitsch PetscCheck(!(qNc != 1) || !(qNc != numComponents), PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_SIZ, "Quadrature components %" PetscInt_FMT " != %" PetscInt_FMT " field components", qNc, numComponents); 16849566063dSJacob Faibussowitsch PetscCall(PetscMalloc6(numComponents, &funcVal, numComponents, &interpolant, coordDim * Nq, &coords, Nq, &fegeom.detJ, coordDim * coordDim * Nq, &fegeom.J, coordDim * coordDim * Nq, &fegeom.invJ)); 16859566063dSJacob Faibussowitsch PetscCall(DMPlexGetSimplexOrBoxCells(dm, 0, &cStart, &cEnd)); 1686e729f68cSMatthew G. Knepley for (c = cStart; c < cEnd; ++c) { 1687e729f68cSMatthew G. Knepley PetscScalar *x = NULL; 16886f288a59SMatthew G. Knepley PetscScalar elemDiff = 0.0; 16899c3cf19fSMatthew G. Knepley PetscInt qc = 0; 1690e729f68cSMatthew G. Knepley 16919566063dSJacob Faibussowitsch PetscCall(DMPlexComputeCellGeometryFEM(dm, c, quad, coords, fegeom.J, fegeom.invJ, fegeom.detJ)); 16929566063dSJacob Faibussowitsch PetscCall(DMPlexVecGetClosure(dm, NULL, localX, c, NULL, &x)); 1693e729f68cSMatthew G. Knepley 1694e729f68cSMatthew G. Knepley for (field = 0, fieldOffset = 0; field < numFields; ++field) { 1695e729f68cSMatthew G. Knepley PetscObject obj; 1696e729f68cSMatthew G. Knepley PetscClassId id; 1697e729f68cSMatthew G. Knepley void *const ctx = ctxs ? ctxs[field] : NULL; 1698e729f68cSMatthew G. Knepley PetscInt Nb, Nc, q, fc; 1699e729f68cSMatthew G. Knepley 17009566063dSJacob Faibussowitsch PetscCall(DMGetField(dm, field, NULL, &obj)); 17019566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 17029371c9d4SSatish Balay if (id == PETSCFE_CLASSID) { 17039371c9d4SSatish Balay PetscCall(PetscFEGetNumComponents((PetscFE)obj, &Nc)); 17049371c9d4SSatish Balay PetscCall(PetscFEGetDimension((PetscFE)obj, &Nb)); 17059371c9d4SSatish Balay } else if (id == PETSCFV_CLASSID) { 17069371c9d4SSatish Balay PetscCall(PetscFVGetNumComponents((PetscFV)obj, &Nc)); 17079371c9d4SSatish Balay Nb = 1; 17089371c9d4SSatish Balay } else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, field); 170923f34ed2SToby Isaac if (funcs[field]) { 17107318780aSToby Isaac for (q = 0; q < Nq; ++q) { 17112a4e142eSMatthew G. Knepley PetscFEGeom qgeom; 17122a4e142eSMatthew G. Knepley 17132a4e142eSMatthew G. Knepley qgeom.dimEmbed = fegeom.dimEmbed; 17142a4e142eSMatthew G. Knepley qgeom.J = &fegeom.J[q * coordDim * coordDim]; 17152a4e142eSMatthew G. Knepley qgeom.invJ = &fegeom.invJ[q * coordDim * coordDim]; 17162a4e142eSMatthew G. Knepley qgeom.detJ = &fegeom.detJ[q]; 171763a3b9bcSJacob Faibussowitsch PetscCheck(fegeom.detJ[q] > 0.0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Invalid determinant %g for element %" PetscInt_FMT ", quadrature points %" PetscInt_FMT, (double)fegeom.detJ[q], c, q); 17189566063dSJacob Faibussowitsch PetscCall((*funcs[field])(coordDim, time, &coords[q * coordDim], Nc, funcVal, ctx)); 1719c3e24edfSBarry Smith #if defined(needs_fix_with_return_code_argument) 1720e735a8a9SMatthew G. Knepley if (ierr) { 17219566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(dm, NULL, localX, c, NULL, &x)); 17229566063dSJacob Faibussowitsch PetscCall(PetscFree6(funcVal, interpolant, coords, fegeom.detJ, fegeom.J, fegeom.invJ)); 17239566063dSJacob Faibussowitsch PetscCall(DMRestoreLocalVector(dm, &localX)); 1724e735a8a9SMatthew G. Knepley } 1725c3e24edfSBarry Smith #endif 17269566063dSJacob Faibussowitsch if (id == PETSCFE_CLASSID) PetscCall(PetscFEInterpolate_Static((PetscFE)obj, &x[fieldOffset], &qgeom, q, interpolant)); 17279566063dSJacob Faibussowitsch else if (id == PETSCFV_CLASSID) PetscCall(PetscFVInterpolate_Static((PetscFV)obj, &x[fieldOffset], q, interpolant)); 172863a3b9bcSJacob Faibussowitsch else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, field); 1729e729f68cSMatthew G. Knepley for (fc = 0; fc < Nc; ++fc) { 1730beaa55a6SMatthew G. Knepley const PetscReal wt = quadWeights[q * qNc + (qNc == 1 ? 0 : qc + fc)]; 17314bee2e38SMatthew G. Knepley elemDiff += PetscSqr(PetscRealPart(interpolant[fc] - funcVal[fc])) * wt * fegeom.detJ[q]; 1732e729f68cSMatthew G. Knepley } 1733e729f68cSMatthew G. Knepley } 173423f34ed2SToby Isaac } 1735beaa55a6SMatthew G. Knepley fieldOffset += Nb; 17369c3cf19fSMatthew G. Knepley qc += Nc; 1737e729f68cSMatthew G. Knepley } 17389566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(dm, NULL, localX, c, NULL, &x)); 17399566063dSJacob Faibussowitsch PetscCall(VecSetValue(D, c - cStart, elemDiff, INSERT_VALUES)); 1740e729f68cSMatthew G. Knepley } 17419566063dSJacob Faibussowitsch PetscCall(PetscFree6(funcVal, interpolant, coords, fegeom.detJ, fegeom.J, fegeom.invJ)); 17429566063dSJacob Faibussowitsch PetscCall(DMRestoreLocalVector(dm, &localX)); 17439566063dSJacob Faibussowitsch PetscCall(VecSqrtAbs(D)); 17443ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1745e729f68cSMatthew G. Knepley } 1746e729f68cSMatthew G. Knepley 17475f0b18bfSMatthew G. Knepley /*@ 174820f4b53cSBarry Smith DMPlexComputeClementInterpolant - This function computes the L2 projection of the cellwise values of a function u onto P1 17495f0b18bfSMatthew G. Knepley 175020f4b53cSBarry Smith Collective 17515f0b18bfSMatthew G. Knepley 17525f0b18bfSMatthew G. Knepley Input Parameters: 1753a1cb98faSBarry Smith + dm - The `DM` 17545f0b18bfSMatthew G. Knepley - locX - The coefficient vector u_h 17555f0b18bfSMatthew G. Knepley 17565f0b18bfSMatthew G. Knepley Output Parameter: 1757a1cb98faSBarry Smith . locC - A `Vec` which holds the Clement interpolant of the function 17585f0b18bfSMatthew G. Knepley 17595f0b18bfSMatthew G. Knepley Level: developer 17605f0b18bfSMatthew G. Knepley 1761a1cb98faSBarry Smith Note: 1762a1cb98faSBarry Smith $ u_h(v_i) = \sum_{T_i \in support(v_i)} |T_i| u_h(T_i) / \sum_{T_i \in support(v_i)} |T_i| $ where $ |T_i| $ is the cell volume 1763a1cb98faSBarry Smith 17641cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMProjectFunction()`, `DMComputeL2Diff()`, `DMPlexComputeL2FieldDiff()`, `DMComputeL2GradientDiff()` 17655f0b18bfSMatthew G. Knepley @*/ 1766d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeClementInterpolant(DM dm, Vec locX, Vec locC) 1767d71ae5a4SJacob Faibussowitsch { 17685f0b18bfSMatthew G. Knepley PetscInt debug = ((DM_Plex *)dm->data)->printFEM; 17695f0b18bfSMatthew G. Knepley DM dmc; 17705f0b18bfSMatthew G. Knepley PetscQuadrature quad; 17715f0b18bfSMatthew G. Knepley PetscScalar *interpolant, *valsum; 17725f0b18bfSMatthew G. Knepley PetscFEGeom fegeom; 17735f0b18bfSMatthew G. Knepley PetscReal *coords; 17745f0b18bfSMatthew G. Knepley const PetscReal *quadPoints, *quadWeights; 17755f0b18bfSMatthew G. Knepley PetscInt dim, cdim, Nf, f, Nc = 0, Nq, qNc, cStart, cEnd, vStart, vEnd, v; 17765f0b18bfSMatthew G. Knepley 17775f0b18bfSMatthew G. Knepley PetscFunctionBegin; 17789566063dSJacob Faibussowitsch PetscCall(PetscCitationsRegister(ClementCitation, &Clementcite)); 17799566063dSJacob Faibussowitsch PetscCall(VecGetDM(locC, &dmc)); 17809566063dSJacob Faibussowitsch PetscCall(VecSet(locC, 0.0)); 17819566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 17829566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDim(dm, &cdim)); 17835f0b18bfSMatthew G. Knepley fegeom.dimEmbed = cdim; 17849566063dSJacob Faibussowitsch PetscCall(DMGetNumFields(dm, &Nf)); 17855f0b18bfSMatthew G. Knepley PetscCheck(Nf > 0, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of fields is zero!"); 17865f0b18bfSMatthew G. Knepley for (f = 0; f < Nf; ++f) { 17875f0b18bfSMatthew G. Knepley PetscObject obj; 17885f0b18bfSMatthew G. Knepley PetscClassId id; 17895f0b18bfSMatthew G. Knepley PetscInt fNc; 17905f0b18bfSMatthew G. Knepley 17919566063dSJacob Faibussowitsch PetscCall(DMGetField(dm, f, NULL, &obj)); 17929566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 17935f0b18bfSMatthew G. Knepley if (id == PETSCFE_CLASSID) { 17945f0b18bfSMatthew G. Knepley PetscFE fe = (PetscFE)obj; 17955f0b18bfSMatthew G. Knepley 17969566063dSJacob Faibussowitsch PetscCall(PetscFEGetQuadrature(fe, &quad)); 17979566063dSJacob Faibussowitsch PetscCall(PetscFEGetNumComponents(fe, &fNc)); 17985f0b18bfSMatthew G. Knepley } else if (id == PETSCFV_CLASSID) { 17995f0b18bfSMatthew G. Knepley PetscFV fv = (PetscFV)obj; 18005f0b18bfSMatthew G. Knepley 18019566063dSJacob Faibussowitsch PetscCall(PetscFVGetQuadrature(fv, &quad)); 18029566063dSJacob Faibussowitsch PetscCall(PetscFVGetNumComponents(fv, &fNc)); 180363a3b9bcSJacob Faibussowitsch } else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, f); 18045f0b18bfSMatthew G. Knepley Nc += fNc; 18055f0b18bfSMatthew G. Knepley } 18069566063dSJacob Faibussowitsch PetscCall(PetscQuadratureGetData(quad, NULL, &qNc, &Nq, &quadPoints, &quadWeights)); 180763a3b9bcSJacob Faibussowitsch PetscCheck(qNc == 1, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_SIZ, "Quadrature components %" PetscInt_FMT " > 1", qNc); 18089566063dSJacob Faibussowitsch PetscCall(PetscMalloc6(Nc * 2, &valsum, Nc, &interpolant, cdim * Nq, &coords, Nq, &fegeom.detJ, cdim * cdim * Nq, &fegeom.J, cdim * cdim * Nq, &fegeom.invJ)); 18099566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthStratum(dm, 0, &vStart, &vEnd)); 18109566063dSJacob Faibussowitsch PetscCall(DMPlexGetSimplexOrBoxCells(dm, 0, &cStart, &cEnd)); 18115f0b18bfSMatthew G. Knepley for (v = vStart; v < vEnd; ++v) { 18125f0b18bfSMatthew G. Knepley PetscScalar volsum = 0.0; 18135f0b18bfSMatthew G. Knepley PetscInt *star = NULL; 18145f0b18bfSMatthew G. Knepley PetscInt starSize, st, fc; 18155f0b18bfSMatthew G. Knepley 18169566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(valsum, Nc)); 18179566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(dm, v, PETSC_FALSE, &starSize, &star)); 18185f0b18bfSMatthew G. Knepley for (st = 0; st < starSize * 2; st += 2) { 18195f0b18bfSMatthew G. Knepley const PetscInt cell = star[st]; 18205f0b18bfSMatthew G. Knepley PetscScalar *val = &valsum[Nc]; 18215f0b18bfSMatthew G. Knepley PetscScalar *x = NULL; 18225f0b18bfSMatthew G. Knepley PetscReal vol = 0.0; 18235f0b18bfSMatthew G. Knepley PetscInt foff = 0; 18245f0b18bfSMatthew G. Knepley 18255f0b18bfSMatthew G. Knepley if ((cell < cStart) || (cell >= cEnd)) continue; 18269566063dSJacob Faibussowitsch PetscCall(DMPlexComputeCellGeometryFEM(dm, cell, quad, coords, fegeom.J, fegeom.invJ, fegeom.detJ)); 18279566063dSJacob Faibussowitsch PetscCall(DMPlexVecGetClosure(dm, NULL, locX, cell, NULL, &x)); 18285f0b18bfSMatthew G. Knepley for (f = 0; f < Nf; ++f) { 18295f0b18bfSMatthew G. Knepley PetscObject obj; 18305f0b18bfSMatthew G. Knepley PetscClassId id; 18315f0b18bfSMatthew G. Knepley PetscInt Nb, fNc, q; 18325f0b18bfSMatthew G. Knepley 18339566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(val, Nc)); 18349566063dSJacob Faibussowitsch PetscCall(DMGetField(dm, f, NULL, &obj)); 18359566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 18369371c9d4SSatish Balay if (id == PETSCFE_CLASSID) { 18379371c9d4SSatish Balay PetscCall(PetscFEGetNumComponents((PetscFE)obj, &fNc)); 18389371c9d4SSatish Balay PetscCall(PetscFEGetDimension((PetscFE)obj, &Nb)); 18399371c9d4SSatish Balay } else if (id == PETSCFV_CLASSID) { 18409371c9d4SSatish Balay PetscCall(PetscFVGetNumComponents((PetscFV)obj, &fNc)); 18419371c9d4SSatish Balay Nb = 1; 18429371c9d4SSatish Balay } else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, f); 18435f0b18bfSMatthew G. Knepley for (q = 0; q < Nq; ++q) { 18445f0b18bfSMatthew G. Knepley const PetscReal wt = quadWeights[q] * fegeom.detJ[q]; 18455f0b18bfSMatthew G. Knepley PetscFEGeom qgeom; 18465f0b18bfSMatthew G. Knepley 18475f0b18bfSMatthew G. Knepley qgeom.dimEmbed = fegeom.dimEmbed; 18485f0b18bfSMatthew G. Knepley qgeom.J = &fegeom.J[q * cdim * cdim]; 18495f0b18bfSMatthew G. Knepley qgeom.invJ = &fegeom.invJ[q * cdim * cdim]; 18505f0b18bfSMatthew G. Knepley qgeom.detJ = &fegeom.detJ[q]; 185163a3b9bcSJacob Faibussowitsch PetscCheck(fegeom.detJ[q] > 0.0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Invalid determinant %g for element %" PetscInt_FMT ", quadrature points %" PetscInt_FMT, (double)fegeom.detJ[q], cell, q); 18529566063dSJacob Faibussowitsch if (id == PETSCFE_CLASSID) PetscCall(PetscFEInterpolate_Static((PetscFE)obj, &x[foff], &qgeom, q, interpolant)); 185363a3b9bcSJacob Faibussowitsch else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, f); 18545f0b18bfSMatthew G. Knepley for (fc = 0; fc < fNc; ++fc) val[foff + fc] += interpolant[fc] * wt; 18555f0b18bfSMatthew G. Knepley vol += wt; 18565f0b18bfSMatthew G. Knepley } 18575f0b18bfSMatthew G. Knepley foff += Nb; 18585f0b18bfSMatthew G. Knepley } 18599566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(dm, NULL, locX, cell, NULL, &x)); 18605f0b18bfSMatthew G. Knepley for (fc = 0; fc < Nc; ++fc) valsum[fc] += val[fc]; 18615f0b18bfSMatthew G. Knepley volsum += vol; 18625f0b18bfSMatthew G. Knepley if (debug) { 18639566063dSJacob Faibussowitsch PetscCall(PetscPrintf(PETSC_COMM_SELF, "Vertex %" PetscInt_FMT " Cell %" PetscInt_FMT " value: [", v, cell)); 18645f0b18bfSMatthew G. Knepley for (fc = 0; fc < Nc; ++fc) { 18659566063dSJacob Faibussowitsch if (fc) PetscCall(PetscPrintf(PETSC_COMM_SELF, ", ")); 18669566063dSJacob Faibussowitsch PetscCall(PetscPrintf(PETSC_COMM_SELF, "%g", (double)PetscRealPart(val[fc]))); 18675f0b18bfSMatthew G. Knepley } 18689566063dSJacob Faibussowitsch PetscCall(PetscPrintf(PETSC_COMM_SELF, "]\n")); 18695f0b18bfSMatthew G. Knepley } 18705f0b18bfSMatthew G. Knepley } 18715f0b18bfSMatthew G. Knepley for (fc = 0; fc < Nc; ++fc) valsum[fc] /= volsum; 18729566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dm, v, PETSC_FALSE, &starSize, &star)); 18739566063dSJacob Faibussowitsch PetscCall(DMPlexVecSetClosure(dmc, NULL, locC, v, valsum, INSERT_VALUES)); 18745f0b18bfSMatthew G. Knepley } 18759566063dSJacob Faibussowitsch PetscCall(PetscFree6(valsum, interpolant, coords, fegeom.detJ, fegeom.J, fegeom.invJ)); 18763ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 18775f0b18bfSMatthew G. Knepley } 18785f0b18bfSMatthew G. Knepley 18795f0b18bfSMatthew G. Knepley /*@ 188020f4b53cSBarry Smith DMPlexComputeGradientClementInterpolant - This function computes the L2 projection of the cellwise gradient of a function u onto P1 18811555c271SMatthew G. Knepley 188220f4b53cSBarry Smith Collective 1883c0f8e1fdSMatthew G. Knepley 18841555c271SMatthew G. Knepley Input Parameters: 1885a1cb98faSBarry Smith + dm - The `DM` 18865f0b18bfSMatthew G. Knepley - locX - The coefficient vector u_h 18871555c271SMatthew G. Knepley 18881555c271SMatthew G. Knepley Output Parameter: 1889a1cb98faSBarry Smith . locC - A `Vec` which holds the Clement interpolant of the gradient 18901555c271SMatthew G. Knepley 18911555c271SMatthew G. Knepley Level: developer 18921555c271SMatthew G. Knepley 1893a1cb98faSBarry Smith Note: 1894a1cb98faSBarry Smith $\nabla u_h(v_i) = \sum_{T_i \in support(v_i)} |T_i| \nabla u_h(T_i) / \sum_{T_i \in support(v_i)} |T_i| $ where $ |T_i| $ is the cell volume 1895a1cb98faSBarry Smith 18961cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMProjectFunction()`, `DMComputeL2Diff()`, `DMPlexComputeL2FieldDiff()`, `DMComputeL2GradientDiff()` 18971555c271SMatthew G. Knepley @*/ 1898d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeGradientClementInterpolant(DM dm, Vec locX, Vec locC) 1899d71ae5a4SJacob Faibussowitsch { 1900db1066baSMatthew G. Knepley DM_Plex *mesh = (DM_Plex *)dm->data; 1901db1066baSMatthew G. Knepley PetscInt debug = mesh->printFEM; 19021555c271SMatthew G. Knepley DM dmC; 19031555c271SMatthew G. Knepley PetscQuadrature quad; 19041555c271SMatthew G. Knepley PetscScalar *interpolant, *gradsum; 19054bee2e38SMatthew G. Knepley PetscFEGeom fegeom; 19064bee2e38SMatthew G. Knepley PetscReal *coords; 19071555c271SMatthew G. Knepley const PetscReal *quadPoints, *quadWeights; 1908485ad865SMatthew G. Knepley PetscInt dim, coordDim, numFields, numComponents = 0, qNc, Nq, cStart, cEnd, vStart, vEnd, v, field, fieldOffset; 19091555c271SMatthew G. Knepley 19101555c271SMatthew G. Knepley PetscFunctionBegin; 19119566063dSJacob Faibussowitsch PetscCall(PetscCitationsRegister(ClementCitation, &Clementcite)); 19129566063dSJacob Faibussowitsch PetscCall(VecGetDM(locC, &dmC)); 19139566063dSJacob Faibussowitsch PetscCall(VecSet(locC, 0.0)); 19149566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 19159566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDim(dm, &coordDim)); 19164bee2e38SMatthew G. Knepley fegeom.dimEmbed = coordDim; 19179566063dSJacob Faibussowitsch PetscCall(DMGetNumFields(dm, &numFields)); 19185f80ce2aSJacob Faibussowitsch PetscCheck(numFields, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of fields is zero!"); 19191555c271SMatthew G. Knepley for (field = 0; field < numFields; ++field) { 19201555c271SMatthew G. Knepley PetscObject obj; 19211555c271SMatthew G. Knepley PetscClassId id; 19221555c271SMatthew G. Knepley PetscInt Nc; 19231555c271SMatthew G. Knepley 19249566063dSJacob Faibussowitsch PetscCall(DMGetField(dm, field, NULL, &obj)); 19259566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 19261555c271SMatthew G. Knepley if (id == PETSCFE_CLASSID) { 19271555c271SMatthew G. Knepley PetscFE fe = (PetscFE)obj; 19281555c271SMatthew G. Knepley 19299566063dSJacob Faibussowitsch PetscCall(PetscFEGetQuadrature(fe, &quad)); 19309566063dSJacob Faibussowitsch PetscCall(PetscFEGetNumComponents(fe, &Nc)); 19311555c271SMatthew G. Knepley } else if (id == PETSCFV_CLASSID) { 19321555c271SMatthew G. Knepley PetscFV fv = (PetscFV)obj; 19331555c271SMatthew G. Knepley 19349566063dSJacob Faibussowitsch PetscCall(PetscFVGetQuadrature(fv, &quad)); 19359566063dSJacob Faibussowitsch PetscCall(PetscFVGetNumComponents(fv, &Nc)); 193663a3b9bcSJacob Faibussowitsch } else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, field); 19371555c271SMatthew G. Knepley numComponents += Nc; 19381555c271SMatthew G. Knepley } 19399566063dSJacob Faibussowitsch PetscCall(PetscQuadratureGetData(quad, NULL, &qNc, &Nq, &quadPoints, &quadWeights)); 194063a3b9bcSJacob Faibussowitsch PetscCheck(!(qNc != 1) || !(qNc != numComponents), PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_SIZ, "Quadrature components %" PetscInt_FMT " != %" PetscInt_FMT " field components", qNc, numComponents); 19419566063dSJacob Faibussowitsch PetscCall(PetscMalloc6(coordDim * numComponents * 2, &gradsum, coordDim * numComponents, &interpolant, coordDim * Nq, &coords, Nq, &fegeom.detJ, coordDim * coordDim * Nq, &fegeom.J, coordDim * coordDim * Nq, &fegeom.invJ)); 19429566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthStratum(dm, 0, &vStart, &vEnd)); 19439566063dSJacob Faibussowitsch PetscCall(DMPlexGetSimplexOrBoxCells(dm, 0, &cStart, &cEnd)); 19441555c271SMatthew G. Knepley for (v = vStart; v < vEnd; ++v) { 19451555c271SMatthew G. Knepley PetscScalar volsum = 0.0; 19461555c271SMatthew G. Knepley PetscInt *star = NULL; 19471555c271SMatthew G. Knepley PetscInt starSize, st, d, fc; 19481555c271SMatthew G. Knepley 19499566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(gradsum, coordDim * numComponents)); 19509566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(dm, v, PETSC_FALSE, &starSize, &star)); 19511555c271SMatthew G. Knepley for (st = 0; st < starSize * 2; st += 2) { 19521555c271SMatthew G. Knepley const PetscInt cell = star[st]; 19531555c271SMatthew G. Knepley PetscScalar *grad = &gradsum[coordDim * numComponents]; 19541555c271SMatthew G. Knepley PetscScalar *x = NULL; 19551555c271SMatthew G. Knepley PetscReal vol = 0.0; 19561555c271SMatthew G. Knepley 19571555c271SMatthew G. Knepley if ((cell < cStart) || (cell >= cEnd)) continue; 19589566063dSJacob Faibussowitsch PetscCall(DMPlexComputeCellGeometryFEM(dm, cell, quad, coords, fegeom.J, fegeom.invJ, fegeom.detJ)); 19599566063dSJacob Faibussowitsch PetscCall(DMPlexVecGetClosure(dm, NULL, locX, cell, NULL, &x)); 19601555c271SMatthew G. Knepley for (field = 0, fieldOffset = 0; field < numFields; ++field) { 19611555c271SMatthew G. Knepley PetscObject obj; 19621555c271SMatthew G. Knepley PetscClassId id; 19631555c271SMatthew G. Knepley PetscInt Nb, Nc, q, qc = 0; 19641555c271SMatthew G. Knepley 19659566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(grad, coordDim * numComponents)); 19669566063dSJacob Faibussowitsch PetscCall(DMGetField(dm, field, NULL, &obj)); 19679566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 19689371c9d4SSatish Balay if (id == PETSCFE_CLASSID) { 19699371c9d4SSatish Balay PetscCall(PetscFEGetNumComponents((PetscFE)obj, &Nc)); 19709371c9d4SSatish Balay PetscCall(PetscFEGetDimension((PetscFE)obj, &Nb)); 19719371c9d4SSatish Balay } else if (id == PETSCFV_CLASSID) { 19729371c9d4SSatish Balay PetscCall(PetscFVGetNumComponents((PetscFV)obj, &Nc)); 19739371c9d4SSatish Balay Nb = 1; 19749371c9d4SSatish Balay } else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, field); 19751555c271SMatthew G. Knepley for (q = 0; q < Nq; ++q) { 19762a4e142eSMatthew G. Knepley PetscFEGeom qgeom; 19772a4e142eSMatthew G. Knepley 19782a4e142eSMatthew G. Knepley qgeom.dimEmbed = fegeom.dimEmbed; 19792a4e142eSMatthew G. Knepley qgeom.J = &fegeom.J[q * coordDim * coordDim]; 19802a4e142eSMatthew G. Knepley qgeom.invJ = &fegeom.invJ[q * coordDim * coordDim]; 19812a4e142eSMatthew G. Knepley qgeom.detJ = &fegeom.detJ[q]; 198263a3b9bcSJacob Faibussowitsch PetscCheck(fegeom.detJ[q] > 0.0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Invalid determinant %g for element %" PetscInt_FMT ", quadrature points %" PetscInt_FMT, (double)fegeom.detJ[q], cell, q); 19839566063dSJacob Faibussowitsch if (id == PETSCFE_CLASSID) PetscCall(PetscFEInterpolateGradient_Static((PetscFE)obj, 1, &x[fieldOffset], &qgeom, q, interpolant)); 198463a3b9bcSJacob Faibussowitsch else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, field); 19851555c271SMatthew G. Knepley for (fc = 0; fc < Nc; ++fc) { 198653d2db2dSJoe Wallwork const PetscReal wt = quadWeights[q * qNc + qc]; 19871555c271SMatthew G. Knepley 19884bee2e38SMatthew G. Knepley for (d = 0; d < coordDim; ++d) grad[fc * coordDim + d] += interpolant[fc * dim + d] * wt * fegeom.detJ[q]; 19891555c271SMatthew G. Knepley } 19904bee2e38SMatthew G. Knepley vol += quadWeights[q * qNc] * fegeom.detJ[q]; 19911555c271SMatthew G. Knepley } 19921555c271SMatthew G. Knepley fieldOffset += Nb; 19931555c271SMatthew G. Knepley qc += Nc; 19941555c271SMatthew G. Knepley } 19959566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(dm, NULL, locX, cell, NULL, &x)); 1996f8527842SMatthew G. Knepley for (fc = 0; fc < numComponents; ++fc) { 1997ad540459SPierre Jolivet for (d = 0; d < coordDim; ++d) gradsum[fc * coordDim + d] += grad[fc * coordDim + d]; 1998f8527842SMatthew G. Knepley } 1999f8527842SMatthew G. Knepley volsum += vol; 2000db1066baSMatthew G. Knepley if (debug) { 20019566063dSJacob Faibussowitsch PetscCall(PetscPrintf(PETSC_COMM_SELF, "Vertex %" PetscInt_FMT " Cell %" PetscInt_FMT " gradient: [", v, cell)); 20021555c271SMatthew G. Knepley for (fc = 0; fc < numComponents; ++fc) { 20031555c271SMatthew G. Knepley for (d = 0; d < coordDim; ++d) { 20049566063dSJacob Faibussowitsch if (fc || d > 0) PetscCall(PetscPrintf(PETSC_COMM_SELF, ", ")); 20059566063dSJacob Faibussowitsch PetscCall(PetscPrintf(PETSC_COMM_SELF, "%g", (double)PetscRealPart(grad[fc * coordDim + d]))); 20061555c271SMatthew G. Knepley } 20071555c271SMatthew G. Knepley } 20089566063dSJacob Faibussowitsch PetscCall(PetscPrintf(PETSC_COMM_SELF, "]\n")); 2009db1066baSMatthew G. Knepley } 20101555c271SMatthew G. Knepley } 20111555c271SMatthew G. Knepley for (fc = 0; fc < numComponents; ++fc) { 20121555c271SMatthew G. Knepley for (d = 0; d < coordDim; ++d) gradsum[fc * coordDim + d] /= volsum; 20131555c271SMatthew G. Knepley } 20149566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dm, v, PETSC_FALSE, &starSize, &star)); 20159566063dSJacob Faibussowitsch PetscCall(DMPlexVecSetClosure(dmC, NULL, locC, v, gradsum, INSERT_VALUES)); 20161555c271SMatthew G. Knepley } 20179566063dSJacob Faibussowitsch PetscCall(PetscFree6(gradsum, interpolant, coords, fegeom.detJ, fegeom.J, fegeom.invJ)); 20183ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 20191555c271SMatthew G. Knepley } 20201555c271SMatthew G. Knepley 2021d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexComputeIntegral_Internal(DM dm, Vec X, PetscInt cStart, PetscInt cEnd, PetscScalar *cintegral, void *user) 2022d71ae5a4SJacob Faibussowitsch { 2023338f77d5SMatthew G. Knepley DM dmAux = NULL; 202461aaff12SToby Isaac PetscDS prob, probAux = NULL; 202573d901b8SMatthew G. Knepley PetscSection section, sectionAux; 2026338f77d5SMatthew G. Knepley Vec locX, locA; 2027c330f8ffSToby Isaac PetscInt dim, numCells = cEnd - cStart, c, f; 2028c330f8ffSToby Isaac PetscBool useFVM = PETSC_FALSE; 2029338f77d5SMatthew G. Knepley /* DS */ 2030338f77d5SMatthew G. Knepley PetscInt Nf, totDim, *uOff, *uOff_x, numConstants; 2031338f77d5SMatthew G. Knepley PetscInt NfAux, totDimAux, *aOff; 2032338f77d5SMatthew G. Knepley PetscScalar *u, *a; 2033338f77d5SMatthew G. Knepley const PetscScalar *constants; 2034338f77d5SMatthew G. Knepley /* Geometry */ 2035c330f8ffSToby Isaac PetscFEGeom *cgeomFEM; 2036338f77d5SMatthew G. Knepley DM dmGrad; 2037c330f8ffSToby Isaac PetscQuadrature affineQuad = NULL; 2038338f77d5SMatthew G. Knepley Vec cellGeometryFVM = NULL, faceGeometryFVM = NULL, locGrad = NULL; 2039b5a3613cSMatthew G. Knepley PetscFVCellGeom *cgeomFVM; 2040338f77d5SMatthew G. Knepley const PetscScalar *lgrad; 2041b7260050SToby Isaac PetscInt maxDegree; 2042c330f8ffSToby Isaac DMField coordField; 2043c330f8ffSToby Isaac IS cellIS; 204473d901b8SMatthew G. Knepley 204573d901b8SMatthew G. Knepley PetscFunctionBegin; 20469566063dSJacob Faibussowitsch PetscCall(DMGetDS(dm, &prob)); 20479566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 20489566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, §ion)); 20499566063dSJacob Faibussowitsch PetscCall(DMGetNumFields(dm, &Nf)); 2050338f77d5SMatthew G. Knepley /* Determine which discretizations we have */ 2051b5a3613cSMatthew G. Knepley for (f = 0; f < Nf; ++f) { 2052b5a3613cSMatthew G. Knepley PetscObject obj; 2053b5a3613cSMatthew G. Knepley PetscClassId id; 2054b5a3613cSMatthew G. Knepley 20559566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(prob, f, &obj)); 20569566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 2057338f77d5SMatthew G. Knepley if (id == PETSCFV_CLASSID) useFVM = PETSC_TRUE; 2058338f77d5SMatthew G. Knepley } 2059338f77d5SMatthew G. Knepley /* Get local solution with boundary values */ 20609566063dSJacob Faibussowitsch PetscCall(DMGetLocalVector(dm, &locX)); 20619566063dSJacob Faibussowitsch PetscCall(DMPlexInsertBoundaryValues(dm, PETSC_TRUE, locX, 0.0, NULL, NULL, NULL)); 20629566063dSJacob Faibussowitsch PetscCall(DMGlobalToLocalBegin(dm, X, INSERT_VALUES, locX)); 20639566063dSJacob Faibussowitsch PetscCall(DMGlobalToLocalEnd(dm, X, INSERT_VALUES, locX)); 2064338f77d5SMatthew G. Knepley /* Read DS information */ 20659566063dSJacob Faibussowitsch PetscCall(PetscDSGetTotalDimension(prob, &totDim)); 20669566063dSJacob Faibussowitsch PetscCall(PetscDSGetComponentOffsets(prob, &uOff)); 20679566063dSJacob Faibussowitsch PetscCall(PetscDSGetComponentDerivativeOffsets(prob, &uOff_x)); 20689566063dSJacob Faibussowitsch PetscCall(ISCreateStride(PETSC_COMM_SELF, numCells, cStart, 1, &cellIS)); 20699566063dSJacob Faibussowitsch PetscCall(PetscDSGetConstants(prob, &numConstants, &constants)); 2070338f77d5SMatthew G. Knepley /* Read Auxiliary DS information */ 20719566063dSJacob Faibussowitsch PetscCall(DMGetAuxiliaryVec(dm, NULL, 0, 0, &locA)); 20729a2a23afSMatthew G. Knepley if (locA) { 20739566063dSJacob Faibussowitsch PetscCall(VecGetDM(locA, &dmAux)); 20749566063dSJacob Faibussowitsch PetscCall(DMGetDS(dmAux, &probAux)); 20759566063dSJacob Faibussowitsch PetscCall(PetscDSGetNumFields(probAux, &NfAux)); 20769566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dmAux, §ionAux)); 20779566063dSJacob Faibussowitsch PetscCall(PetscDSGetTotalDimension(probAux, &totDimAux)); 20789566063dSJacob Faibussowitsch PetscCall(PetscDSGetComponentOffsets(probAux, &aOff)); 2079338f77d5SMatthew G. Knepley } 2080338f77d5SMatthew G. Knepley /* Allocate data arrays */ 20819566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(numCells * totDim, &u)); 20829566063dSJacob Faibussowitsch if (dmAux) PetscCall(PetscMalloc1(numCells * totDimAux, &a)); 2083338f77d5SMatthew G. Knepley /* Read out geometry */ 20849566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateField(dm, &coordField)); 20859566063dSJacob Faibussowitsch PetscCall(DMFieldGetDegree(coordField, cellIS, NULL, &maxDegree)); 2086b7260050SToby Isaac if (maxDegree <= 1) { 20879566063dSJacob Faibussowitsch PetscCall(DMFieldCreateDefaultQuadrature(coordField, cellIS, &affineQuad)); 208848a46eb9SPierre Jolivet if (affineQuad) PetscCall(DMFieldCreateFEGeom(coordField, cellIS, affineQuad, PETSC_FALSE, &cgeomFEM)); 2089b5a3613cSMatthew G. Knepley } 2090b5a3613cSMatthew G. Knepley if (useFVM) { 2091338f77d5SMatthew G. Knepley PetscFV fv = NULL; 2092b5a3613cSMatthew G. Knepley Vec grad; 2093b5a3613cSMatthew G. Knepley PetscInt fStart, fEnd; 2094b5a3613cSMatthew G. Knepley PetscBool compGrad; 2095b5a3613cSMatthew G. Knepley 2096338f77d5SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 2097338f77d5SMatthew G. Knepley PetscObject obj; 2098338f77d5SMatthew G. Knepley PetscClassId id; 2099338f77d5SMatthew G. Knepley 21009566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(prob, f, &obj)); 21019566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 21029371c9d4SSatish Balay if (id == PETSCFV_CLASSID) { 21039371c9d4SSatish Balay fv = (PetscFV)obj; 21049371c9d4SSatish Balay break; 21059371c9d4SSatish Balay } 2106338f77d5SMatthew G. Knepley } 21079566063dSJacob Faibussowitsch PetscCall(PetscFVGetComputeGradients(fv, &compGrad)); 21089566063dSJacob Faibussowitsch PetscCall(PetscFVSetComputeGradients(fv, PETSC_TRUE)); 21099566063dSJacob Faibussowitsch PetscCall(DMPlexComputeGeometryFVM(dm, &cellGeometryFVM, &faceGeometryFVM)); 21109566063dSJacob Faibussowitsch PetscCall(DMPlexComputeGradientFVM(dm, fv, faceGeometryFVM, cellGeometryFVM, &dmGrad)); 21119566063dSJacob Faibussowitsch PetscCall(PetscFVSetComputeGradients(fv, compGrad)); 21129566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(cellGeometryFVM, (const PetscScalar **)&cgeomFVM)); 2113b5a3613cSMatthew G. Knepley /* Reconstruct and limit cell gradients */ 21149566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(dm, 1, &fStart, &fEnd)); 21159566063dSJacob Faibussowitsch PetscCall(DMGetGlobalVector(dmGrad, &grad)); 21169566063dSJacob Faibussowitsch PetscCall(DMPlexReconstructGradients_Internal(dm, fv, fStart, fEnd, faceGeometryFVM, cellGeometryFVM, locX, grad)); 2117b5a3613cSMatthew G. Knepley /* Communicate gradient values */ 21189566063dSJacob Faibussowitsch PetscCall(DMGetLocalVector(dmGrad, &locGrad)); 21199566063dSJacob Faibussowitsch PetscCall(DMGlobalToLocalBegin(dmGrad, grad, INSERT_VALUES, locGrad)); 21209566063dSJacob Faibussowitsch PetscCall(DMGlobalToLocalEnd(dmGrad, grad, INSERT_VALUES, locGrad)); 21219566063dSJacob Faibussowitsch PetscCall(DMRestoreGlobalVector(dmGrad, &grad)); 2122b5a3613cSMatthew G. Knepley /* Handle non-essential (e.g. outflow) boundary values */ 21239566063dSJacob Faibussowitsch PetscCall(DMPlexInsertBoundaryValues(dm, PETSC_FALSE, locX, 0.0, faceGeometryFVM, cellGeometryFVM, locGrad)); 21249566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(locGrad, &lgrad)); 2125b5a3613cSMatthew G. Knepley } 2126338f77d5SMatthew G. Knepley /* Read out data from inputs */ 212773d901b8SMatthew G. Knepley for (c = cStart; c < cEnd; ++c) { 212873d901b8SMatthew G. Knepley PetscScalar *x = NULL; 212973d901b8SMatthew G. Knepley PetscInt i; 213073d901b8SMatthew G. Knepley 21319566063dSJacob Faibussowitsch PetscCall(DMPlexVecGetClosure(dm, section, locX, c, NULL, &x)); 21320f2d7e86SMatthew G. Knepley for (i = 0; i < totDim; ++i) u[c * totDim + i] = x[i]; 21339566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(dm, section, locX, c, NULL, &x)); 213473d901b8SMatthew G. Knepley if (dmAux) { 21359566063dSJacob Faibussowitsch PetscCall(DMPlexVecGetClosure(dmAux, sectionAux, locA, c, NULL, &x)); 21360f2d7e86SMatthew G. Knepley for (i = 0; i < totDimAux; ++i) a[c * totDimAux + i] = x[i]; 21379566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(dmAux, sectionAux, locA, c, NULL, &x)); 213873d901b8SMatthew G. Knepley } 213973d901b8SMatthew G. Knepley } 2140338f77d5SMatthew G. Knepley /* Do integration for each field */ 214173d901b8SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 2142c1f031eeSMatthew G. Knepley PetscObject obj; 2143c1f031eeSMatthew G. Knepley PetscClassId id; 2144c1f031eeSMatthew G. Knepley PetscInt numChunks, numBatches, batchSize, numBlocks, blockSize, Ne, Nr, offset; 214573d901b8SMatthew G. Knepley 21469566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(prob, f, &obj)); 21479566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 2148c1f031eeSMatthew G. Knepley if (id == PETSCFE_CLASSID) { 2149c1f031eeSMatthew G. Knepley PetscFE fe = (PetscFE)obj; 2150c1f031eeSMatthew G. Knepley PetscQuadrature q; 2151c330f8ffSToby Isaac PetscFEGeom *chunkGeom = NULL; 2152c1f031eeSMatthew G. Knepley PetscInt Nq, Nb; 2153c1f031eeSMatthew G. Knepley 21549566063dSJacob Faibussowitsch PetscCall(PetscFEGetTileSizes(fe, NULL, &numBlocks, NULL, &numBatches)); 21559566063dSJacob Faibussowitsch PetscCall(PetscFEGetQuadrature(fe, &q)); 21569566063dSJacob Faibussowitsch PetscCall(PetscQuadratureGetData(q, NULL, NULL, &Nq, NULL, NULL)); 21579566063dSJacob Faibussowitsch PetscCall(PetscFEGetDimension(fe, &Nb)); 2158c1f031eeSMatthew G. Knepley blockSize = Nb * Nq; 215973d901b8SMatthew G. Knepley batchSize = numBlocks * blockSize; 21609566063dSJacob Faibussowitsch PetscCall(PetscFESetTileSizes(fe, blockSize, numBlocks, batchSize, numBatches)); 216173d901b8SMatthew G. Knepley numChunks = numCells / (numBatches * batchSize); 216273d901b8SMatthew G. Knepley Ne = numChunks * numBatches * batchSize; 216373d901b8SMatthew G. Knepley Nr = numCells % (numBatches * batchSize); 216473d901b8SMatthew G. Knepley offset = numCells - Nr; 216548a46eb9SPierre Jolivet if (!affineQuad) PetscCall(DMFieldCreateFEGeom(coordField, cellIS, q, PETSC_FALSE, &cgeomFEM)); 21669566063dSJacob Faibussowitsch PetscCall(PetscFEGeomGetChunk(cgeomFEM, 0, offset, &chunkGeom)); 21679566063dSJacob Faibussowitsch PetscCall(PetscFEIntegrate(prob, f, Ne, chunkGeom, u, probAux, a, cintegral)); 21689566063dSJacob Faibussowitsch PetscCall(PetscFEGeomGetChunk(cgeomFEM, offset, numCells, &chunkGeom)); 21699566063dSJacob Faibussowitsch PetscCall(PetscFEIntegrate(prob, f, Nr, chunkGeom, &u[offset * totDim], probAux, &a[offset * totDimAux], &cintegral[offset * Nf])); 21709566063dSJacob Faibussowitsch PetscCall(PetscFEGeomRestoreChunk(cgeomFEM, offset, numCells, &chunkGeom)); 217148a46eb9SPierre Jolivet if (!affineQuad) PetscCall(PetscFEGeomDestroy(&cgeomFEM)); 2172c1f031eeSMatthew G. Knepley } else if (id == PETSCFV_CLASSID) { 2173c1f031eeSMatthew G. Knepley PetscInt foff; 2174420e96edSMatthew G. Knepley PetscPointFunc obj_func; 2175b69edc29SMatthew G. Knepley PetscScalar lint; 2176c1f031eeSMatthew G. Knepley 21779566063dSJacob Faibussowitsch PetscCall(PetscDSGetObjective(prob, f, &obj_func)); 21789566063dSJacob Faibussowitsch PetscCall(PetscDSGetFieldOffset(prob, f, &foff)); 2179c1f031eeSMatthew G. Knepley if (obj_func) { 2180c1f031eeSMatthew G. Knepley for (c = 0; c < numCells; ++c) { 2181b5a3613cSMatthew G. Knepley PetscScalar *u_x; 2182b5a3613cSMatthew G. Knepley 21839566063dSJacob Faibussowitsch PetscCall(DMPlexPointLocalRead(dmGrad, c, lgrad, &u_x)); 2184338f77d5SMatthew G. Knepley obj_func(dim, Nf, NfAux, uOff, uOff_x, &u[totDim * c + foff], NULL, u_x, aOff, NULL, &a[totDimAux * c], NULL, NULL, 0.0, cgeomFVM[c].centroid, numConstants, constants, &lint); 2185338f77d5SMatthew G. Knepley cintegral[c * Nf + f] += PetscRealPart(lint) * cgeomFVM[c].volume; 218673d901b8SMatthew G. Knepley } 2187c1f031eeSMatthew G. Knepley } 218863a3b9bcSJacob Faibussowitsch } else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, f); 2189c1f031eeSMatthew G. Knepley } 2190338f77d5SMatthew G. Knepley /* Cleanup data arrays */ 2191b5a3613cSMatthew G. Knepley if (useFVM) { 21929566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(locGrad, &lgrad)); 21939566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(cellGeometryFVM, (const PetscScalar **)&cgeomFVM)); 21949566063dSJacob Faibussowitsch PetscCall(DMRestoreLocalVector(dmGrad, &locGrad)); 21959566063dSJacob Faibussowitsch PetscCall(VecDestroy(&faceGeometryFVM)); 21969566063dSJacob Faibussowitsch PetscCall(VecDestroy(&cellGeometryFVM)); 21979566063dSJacob Faibussowitsch PetscCall(DMDestroy(&dmGrad)); 2198b5a3613cSMatthew G. Knepley } 21999566063dSJacob Faibussowitsch if (dmAux) PetscCall(PetscFree(a)); 22009566063dSJacob Faibussowitsch PetscCall(PetscFree(u)); 2201338f77d5SMatthew G. Knepley /* Cleanup */ 220248a46eb9SPierre Jolivet if (affineQuad) PetscCall(PetscFEGeomDestroy(&cgeomFEM)); 22039566063dSJacob Faibussowitsch PetscCall(PetscQuadratureDestroy(&affineQuad)); 22049566063dSJacob Faibussowitsch PetscCall(ISDestroy(&cellIS)); 22059566063dSJacob Faibussowitsch PetscCall(DMRestoreLocalVector(dm, &locX)); 22063ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2207338f77d5SMatthew G. Knepley } 2208338f77d5SMatthew G. Knepley 2209338f77d5SMatthew G. Knepley /*@ 2210338f77d5SMatthew G. Knepley DMPlexComputeIntegralFEM - Form the integral over the domain from the global input X using pointwise functions specified by the user 2211338f77d5SMatthew G. Knepley 2212338f77d5SMatthew G. Knepley Input Parameters: 2213338f77d5SMatthew G. Knepley + dm - The mesh 2214338f77d5SMatthew G. Knepley . X - Global input vector 2215338f77d5SMatthew G. Knepley - user - The user context 2216338f77d5SMatthew G. Knepley 2217338f77d5SMatthew G. Knepley Output Parameter: 2218338f77d5SMatthew G. Knepley . integral - Integral for each field 2219338f77d5SMatthew G. Knepley 2220338f77d5SMatthew G. Knepley Level: developer 2221338f77d5SMatthew G. Knepley 22221cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexSNESComputeResidualFEM()` 2223338f77d5SMatthew G. Knepley @*/ 2224d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeIntegralFEM(DM dm, Vec X, PetscScalar *integral, void *user) 2225d71ae5a4SJacob Faibussowitsch { 2226338f77d5SMatthew G. Knepley DM_Plex *mesh = (DM_Plex *)dm->data; 2227b8feb594SMatthew G. Knepley PetscScalar *cintegral, *lintegral; 2228412e9a14SMatthew G. Knepley PetscInt Nf, f, cellHeight, cStart, cEnd, cell; 2229338f77d5SMatthew G. Knepley 2230338f77d5SMatthew G. Knepley PetscFunctionBegin; 2231338f77d5SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 2232338f77d5SMatthew G. Knepley PetscValidHeaderSpecific(X, VEC_CLASSID, 2); 22334f572ea9SToby Isaac PetscAssertPointer(integral, 3); 22349566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DMPLEX_IntegralFEM, dm, 0, 0, 0)); 22359566063dSJacob Faibussowitsch PetscCall(DMGetNumFields(dm, &Nf)); 22369566063dSJacob Faibussowitsch PetscCall(DMPlexGetVTKCellHeight(dm, &cellHeight)); 22379566063dSJacob Faibussowitsch PetscCall(DMPlexGetSimplexOrBoxCells(dm, cellHeight, &cStart, &cEnd)); 2238338f77d5SMatthew G. Knepley /* TODO Introduce a loop over large chunks (right now this is a single chunk) */ 22399566063dSJacob Faibussowitsch PetscCall(PetscCalloc2(Nf, &lintegral, (cEnd - cStart) * Nf, &cintegral)); 22409566063dSJacob Faibussowitsch PetscCall(DMPlexComputeIntegral_Internal(dm, X, cStart, cEnd, cintegral, user)); 2241338f77d5SMatthew G. Knepley /* Sum up values */ 2242338f77d5SMatthew G. Knepley for (cell = cStart; cell < cEnd; ++cell) { 2243338f77d5SMatthew G. Knepley const PetscInt c = cell - cStart; 2244338f77d5SMatthew G. Knepley 22459566063dSJacob Faibussowitsch if (mesh->printFEM > 1) PetscCall(DMPrintCellVector(cell, "Cell Integral", Nf, &cintegral[c * Nf])); 2246b8feb594SMatthew G. Knepley for (f = 0; f < Nf; ++f) lintegral[f] += cintegral[c * Nf + f]; 2247338f77d5SMatthew G. Knepley } 22481c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(lintegral, integral, Nf, MPIU_SCALAR, MPIU_SUM, PetscObjectComm((PetscObject)dm))); 224973d901b8SMatthew G. Knepley if (mesh->printFEM) { 22509566063dSJacob Faibussowitsch PetscCall(PetscPrintf(PetscObjectComm((PetscObject)dm), "Integral:")); 22519566063dSJacob Faibussowitsch for (f = 0; f < Nf; ++f) PetscCall(PetscPrintf(PetscObjectComm((PetscObject)dm), " %g", (double)PetscRealPart(integral[f]))); 22529566063dSJacob Faibussowitsch PetscCall(PetscPrintf(PetscObjectComm((PetscObject)dm), "\n")); 225373d901b8SMatthew G. Knepley } 22549566063dSJacob Faibussowitsch PetscCall(PetscFree2(lintegral, cintegral)); 22559566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DMPLEX_IntegralFEM, dm, 0, 0, 0)); 22563ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2257338f77d5SMatthew G. Knepley } 2258338f77d5SMatthew G. Knepley 2259338f77d5SMatthew G. Knepley /*@ 2260338f77d5SMatthew G. Knepley DMPlexComputeCellwiseIntegralFEM - Form the vector of cellwise integrals F from the global input X using pointwise functions specified by the user 2261338f77d5SMatthew G. Knepley 2262338f77d5SMatthew G. Knepley Input Parameters: 2263338f77d5SMatthew G. Knepley + dm - The mesh 2264338f77d5SMatthew G. Knepley . X - Global input vector 2265338f77d5SMatthew G. Knepley - user - The user context 2266338f77d5SMatthew G. Knepley 2267338f77d5SMatthew G. Knepley Output Parameter: 226860225df5SJacob Faibussowitsch . F - Cellwise integrals for each field 2269338f77d5SMatthew G. Knepley 2270338f77d5SMatthew G. Knepley Level: developer 2271338f77d5SMatthew G. Knepley 22721cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexSNESComputeResidualFEM()` 2273338f77d5SMatthew G. Knepley @*/ 2274d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeCellwiseIntegralFEM(DM dm, Vec X, Vec F, void *user) 2275d71ae5a4SJacob Faibussowitsch { 2276338f77d5SMatthew G. Knepley DM_Plex *mesh = (DM_Plex *)dm->data; 2277338f77d5SMatthew G. Knepley DM dmF; 2278338f77d5SMatthew G. Knepley PetscSection sectionF; 2279338f77d5SMatthew G. Knepley PetscScalar *cintegral, *af; 2280412e9a14SMatthew G. Knepley PetscInt Nf, f, cellHeight, cStart, cEnd, cell; 2281338f77d5SMatthew G. Knepley 2282338f77d5SMatthew G. Knepley PetscFunctionBegin; 2283338f77d5SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 2284338f77d5SMatthew G. Knepley PetscValidHeaderSpecific(X, VEC_CLASSID, 2); 2285338f77d5SMatthew G. Knepley PetscValidHeaderSpecific(F, VEC_CLASSID, 3); 22869566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DMPLEX_IntegralFEM, dm, 0, 0, 0)); 22879566063dSJacob Faibussowitsch PetscCall(DMGetNumFields(dm, &Nf)); 22889566063dSJacob Faibussowitsch PetscCall(DMPlexGetVTKCellHeight(dm, &cellHeight)); 22899566063dSJacob Faibussowitsch PetscCall(DMPlexGetSimplexOrBoxCells(dm, cellHeight, &cStart, &cEnd)); 2290338f77d5SMatthew G. Knepley /* TODO Introduce a loop over large chunks (right now this is a single chunk) */ 22919566063dSJacob Faibussowitsch PetscCall(PetscCalloc1((cEnd - cStart) * Nf, &cintegral)); 22929566063dSJacob Faibussowitsch PetscCall(DMPlexComputeIntegral_Internal(dm, X, cStart, cEnd, cintegral, user)); 2293338f77d5SMatthew G. Knepley /* Put values in F*/ 22949566063dSJacob Faibussowitsch PetscCall(VecGetDM(F, &dmF)); 22959566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dmF, §ionF)); 22969566063dSJacob Faibussowitsch PetscCall(VecGetArray(F, &af)); 2297338f77d5SMatthew G. Knepley for (cell = cStart; cell < cEnd; ++cell) { 2298338f77d5SMatthew G. Knepley const PetscInt c = cell - cStart; 2299338f77d5SMatthew G. Knepley PetscInt dof, off; 2300338f77d5SMatthew G. Knepley 23019566063dSJacob Faibussowitsch if (mesh->printFEM > 1) PetscCall(DMPrintCellVector(cell, "Cell Integral", Nf, &cintegral[c * Nf])); 23029566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(sectionF, cell, &dof)); 23039566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(sectionF, cell, &off)); 230463a3b9bcSJacob Faibussowitsch PetscCheck(dof == Nf, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "The number of cell dofs %" PetscInt_FMT " != %" PetscInt_FMT, dof, Nf); 2305338f77d5SMatthew G. Knepley for (f = 0; f < Nf; ++f) af[off + f] = cintegral[c * Nf + f]; 2306338f77d5SMatthew G. Knepley } 23079566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(F, &af)); 23089566063dSJacob Faibussowitsch PetscCall(PetscFree(cintegral)); 23099566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DMPLEX_IntegralFEM, dm, 0, 0, 0)); 23103ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 231173d901b8SMatthew G. Knepley } 231273d901b8SMatthew G. Knepley 2313d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexComputeBdIntegral_Internal(DM dm, Vec locX, IS pointIS, void (*func)(PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], PetscReal, const PetscReal[], const PetscReal[], PetscInt, const PetscScalar[], PetscScalar[]), PetscScalar *fintegral, void *user) 2314d71ae5a4SJacob Faibussowitsch { 23159b6f715bSMatthew G. Knepley DM plex = NULL, plexA = NULL; 2316a6e0b375SMatthew G. Knepley DMEnclosureType encAux; 23179b6f715bSMatthew G. Knepley PetscDS prob, probAux = NULL; 23189b6f715bSMatthew G. Knepley PetscSection section, sectionAux = NULL; 23199b6f715bSMatthew G. Knepley Vec locA = NULL; 23209b6f715bSMatthew G. Knepley DMField coordField; 23219b6f715bSMatthew G. Knepley PetscInt Nf, totDim, *uOff, *uOff_x; 23229b6f715bSMatthew G. Knepley PetscInt NfAux = 0, totDimAux = 0, *aOff = NULL; 23239b6f715bSMatthew G. Knepley PetscScalar *u, *a = NULL; 232464c72086SMatthew G. Knepley const PetscScalar *constants; 23259b6f715bSMatthew G. Knepley PetscInt numConstants, f; 232664c72086SMatthew G. Knepley 232764c72086SMatthew G. Knepley PetscFunctionBegin; 23289566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateField(dm, &coordField)); 23299566063dSJacob Faibussowitsch PetscCall(DMConvert(dm, DMPLEX, &plex)); 23309566063dSJacob Faibussowitsch PetscCall(DMGetDS(dm, &prob)); 23319566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, §ion)); 23329566063dSJacob Faibussowitsch PetscCall(PetscSectionGetNumFields(section, &Nf)); 233364c72086SMatthew G. Knepley /* Determine which discretizations we have */ 23349b6f715bSMatthew G. Knepley for (f = 0; f < Nf; ++f) { 233564c72086SMatthew G. Knepley PetscObject obj; 233664c72086SMatthew G. Knepley PetscClassId id; 233764c72086SMatthew G. Knepley 23389566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(prob, f, &obj)); 23399566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 234063a3b9bcSJacob Faibussowitsch PetscCheck(id != PETSCFV_CLASSID, PetscObjectComm((PetscObject)dm), PETSC_ERR_SUP, "Not supported for FVM (field %" PetscInt_FMT ")", f); 234164c72086SMatthew G. Knepley } 234264c72086SMatthew G. Knepley /* Read DS information */ 23439566063dSJacob Faibussowitsch PetscCall(PetscDSGetTotalDimension(prob, &totDim)); 23449566063dSJacob Faibussowitsch PetscCall(PetscDSGetComponentOffsets(prob, &uOff)); 23459566063dSJacob Faibussowitsch PetscCall(PetscDSGetComponentDerivativeOffsets(prob, &uOff_x)); 23469566063dSJacob Faibussowitsch PetscCall(PetscDSGetConstants(prob, &numConstants, &constants)); 234764c72086SMatthew G. Knepley /* Read Auxiliary DS information */ 23489566063dSJacob Faibussowitsch PetscCall(DMGetAuxiliaryVec(dm, NULL, 0, 0, &locA)); 23499b6f715bSMatthew G. Knepley if (locA) { 23509b6f715bSMatthew G. Knepley DM dmAux; 23519b6f715bSMatthew G. Knepley 23529566063dSJacob Faibussowitsch PetscCall(VecGetDM(locA, &dmAux)); 23539566063dSJacob Faibussowitsch PetscCall(DMGetEnclosureRelation(dmAux, dm, &encAux)); 23549566063dSJacob Faibussowitsch PetscCall(DMConvert(dmAux, DMPLEX, &plexA)); 23559566063dSJacob Faibussowitsch PetscCall(DMGetDS(dmAux, &probAux)); 23569566063dSJacob Faibussowitsch PetscCall(PetscDSGetNumFields(probAux, &NfAux)); 23579566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dmAux, §ionAux)); 23589566063dSJacob Faibussowitsch PetscCall(PetscDSGetTotalDimension(probAux, &totDimAux)); 23599566063dSJacob Faibussowitsch PetscCall(PetscDSGetComponentOffsets(probAux, &aOff)); 236064c72086SMatthew G. Knepley } 23619b6f715bSMatthew G. Knepley /* Integrate over points */ 23629b6f715bSMatthew G. Knepley { 23639b6f715bSMatthew G. Knepley PetscFEGeom *fgeom, *chunkGeom = NULL; 2364b7260050SToby Isaac PetscInt maxDegree; 23659b6f715bSMatthew G. Knepley PetscQuadrature qGeom = NULL; 23669b6f715bSMatthew G. Knepley const PetscInt *points; 23679b6f715bSMatthew G. Knepley PetscInt numFaces, face, Nq, field; 23689b6f715bSMatthew G. Knepley PetscInt numChunks, chunkSize, chunk, Nr, offset; 236964c72086SMatthew G. Knepley 23709566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(pointIS, &numFaces)); 23719566063dSJacob Faibussowitsch PetscCall(ISGetIndices(pointIS, &points)); 23729566063dSJacob Faibussowitsch PetscCall(PetscCalloc2(numFaces * totDim, &u, locA ? numFaces * totDimAux : 0, &a)); 23739566063dSJacob Faibussowitsch PetscCall(DMFieldGetDegree(coordField, pointIS, NULL, &maxDegree)); 237464c72086SMatthew G. Knepley for (field = 0; field < Nf; ++field) { 237564c72086SMatthew G. Knepley PetscFE fe; 237664c72086SMatthew G. Knepley 23779566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(prob, field, (PetscObject *)&fe)); 23789566063dSJacob Faibussowitsch if (maxDegree <= 1) PetscCall(DMFieldCreateDefaultQuadrature(coordField, pointIS, &qGeom)); 23799b6f715bSMatthew G. Knepley if (!qGeom) { 23809566063dSJacob Faibussowitsch PetscCall(PetscFEGetFaceQuadrature(fe, &qGeom)); 23819566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)qGeom)); 23829b6f715bSMatthew G. Knepley } 23839566063dSJacob Faibussowitsch PetscCall(PetscQuadratureGetData(qGeom, NULL, NULL, &Nq, NULL, NULL)); 23849566063dSJacob Faibussowitsch PetscCall(DMPlexGetFEGeom(coordField, pointIS, qGeom, PETSC_TRUE, &fgeom)); 23859b6f715bSMatthew G. Knepley for (face = 0; face < numFaces; ++face) { 2386f15274beSMatthew Knepley const PetscInt point = points[face], *support; 23879b6f715bSMatthew G. Knepley PetscScalar *x = NULL; 2388f15274beSMatthew Knepley PetscInt i; 23899b6f715bSMatthew G. Knepley 23909566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(dm, point, &support)); 23919566063dSJacob Faibussowitsch PetscCall(DMPlexVecGetClosure(plex, section, locX, support[0], NULL, &x)); 23929b6f715bSMatthew G. Knepley for (i = 0; i < totDim; ++i) u[face * totDim + i] = x[i]; 23939566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(plex, section, locX, support[0], NULL, &x)); 23949b6f715bSMatthew G. Knepley if (locA) { 23959b6f715bSMatthew G. Knepley PetscInt subp; 23969566063dSJacob Faibussowitsch PetscCall(DMGetEnclosurePoint(plexA, dm, encAux, support[0], &subp)); 23979566063dSJacob Faibussowitsch PetscCall(DMPlexVecGetClosure(plexA, sectionAux, locA, subp, NULL, &x)); 23989b6f715bSMatthew G. Knepley for (i = 0; i < totDimAux; ++i) a[f * totDimAux + i] = x[i]; 23999566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(plexA, sectionAux, locA, subp, NULL, &x)); 24009b6f715bSMatthew G. Knepley } 24019b6f715bSMatthew G. Knepley } 24029b6f715bSMatthew G. Knepley /* Get blocking */ 24039b6f715bSMatthew G. Knepley { 24049b6f715bSMatthew G. Knepley PetscQuadrature q; 24059b6f715bSMatthew G. Knepley PetscInt numBatches, batchSize, numBlocks, blockSize; 24069b6f715bSMatthew G. Knepley PetscInt Nq, Nb; 24079b6f715bSMatthew G. Knepley 24089566063dSJacob Faibussowitsch PetscCall(PetscFEGetTileSizes(fe, NULL, &numBlocks, NULL, &numBatches)); 24099566063dSJacob Faibussowitsch PetscCall(PetscFEGetQuadrature(fe, &q)); 24109566063dSJacob Faibussowitsch PetscCall(PetscQuadratureGetData(q, NULL, NULL, &Nq, NULL, NULL)); 24119566063dSJacob Faibussowitsch PetscCall(PetscFEGetDimension(fe, &Nb)); 241264c72086SMatthew G. Knepley blockSize = Nb * Nq; 241364c72086SMatthew G. Knepley batchSize = numBlocks * blockSize; 24149b6f715bSMatthew G. Knepley chunkSize = numBatches * batchSize; 24159566063dSJacob Faibussowitsch PetscCall(PetscFESetTileSizes(fe, blockSize, numBlocks, batchSize, numBatches)); 24169b6f715bSMatthew G. Knepley numChunks = numFaces / chunkSize; 24179b6f715bSMatthew G. Knepley Nr = numFaces % chunkSize; 241864c72086SMatthew G. Knepley offset = numFaces - Nr; 241964c72086SMatthew G. Knepley } 24209b6f715bSMatthew G. Knepley /* Do integration for each field */ 24219b6f715bSMatthew G. Knepley for (chunk = 0; chunk < numChunks; ++chunk) { 24229566063dSJacob Faibussowitsch PetscCall(PetscFEGeomGetChunk(fgeom, chunk * chunkSize, (chunk + 1) * chunkSize, &chunkGeom)); 24239566063dSJacob Faibussowitsch PetscCall(PetscFEIntegrateBd(prob, field, func, chunkSize, chunkGeom, u, probAux, a, fintegral)); 24249566063dSJacob Faibussowitsch PetscCall(PetscFEGeomRestoreChunk(fgeom, 0, offset, &chunkGeom)); 242564c72086SMatthew G. Knepley } 24269566063dSJacob Faibussowitsch PetscCall(PetscFEGeomGetChunk(fgeom, offset, numFaces, &chunkGeom)); 24279566063dSJacob Faibussowitsch PetscCall(PetscFEIntegrateBd(prob, field, func, Nr, chunkGeom, &u[offset * totDim], probAux, a ? &a[offset * totDimAux] : NULL, &fintegral[offset * Nf])); 24289566063dSJacob Faibussowitsch PetscCall(PetscFEGeomRestoreChunk(fgeom, offset, numFaces, &chunkGeom)); 242964c72086SMatthew G. Knepley /* Cleanup data arrays */ 24309566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreFEGeom(coordField, pointIS, qGeom, PETSC_TRUE, &fgeom)); 24319566063dSJacob Faibussowitsch PetscCall(PetscQuadratureDestroy(&qGeom)); 24329566063dSJacob Faibussowitsch PetscCall(PetscFree2(u, a)); 24339566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(pointIS, &points)); 243464c72086SMatthew G. Knepley } 243564c72086SMatthew G. Knepley } 24369566063dSJacob Faibussowitsch if (plex) PetscCall(DMDestroy(&plex)); 24379566063dSJacob Faibussowitsch if (plexA) PetscCall(DMDestroy(&plexA)); 24383ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 24399b6f715bSMatthew G. Knepley } 24409b6f715bSMatthew G. Knepley 244160225df5SJacob Faibussowitsch /*@C 24429b6f715bSMatthew G. Knepley DMPlexComputeBdIntegral - Form the integral over the specified boundary from the global input X using pointwise functions specified by the user 24439b6f715bSMatthew G. Knepley 24449b6f715bSMatthew G. Knepley Input Parameters: 24459b6f715bSMatthew G. Knepley + dm - The mesh 24469b6f715bSMatthew G. Knepley . X - Global input vector 2447a1cb98faSBarry Smith . label - The boundary `DMLabel` 2448a1cb98faSBarry Smith . numVals - The number of label values to use, or `PETSC_DETERMINE` for all values 2449a1cb98faSBarry Smith . vals - The label values to use, or NULL for all values 245067b8a455SSatish Balay . func - The function to integrate along the boundary 24519b6f715bSMatthew G. Knepley - user - The user context 24529b6f715bSMatthew G. Knepley 24539b6f715bSMatthew G. Knepley Output Parameter: 24549b6f715bSMatthew G. Knepley . integral - Integral for each field 24559b6f715bSMatthew G. Knepley 24569b6f715bSMatthew G. Knepley Level: developer 24579b6f715bSMatthew G. Knepley 24581cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexComputeIntegralFEM()`, `DMPlexComputeBdResidualFEM()` 24599b6f715bSMatthew G. Knepley @*/ 2460d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeBdIntegral(DM dm, Vec X, DMLabel label, PetscInt numVals, const PetscInt vals[], void (*func)(PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], PetscReal, const PetscReal[], const PetscReal[], PetscInt, const PetscScalar[], PetscScalar[]), PetscScalar *integral, void *user) 2461d71ae5a4SJacob Faibussowitsch { 24629b6f715bSMatthew G. Knepley Vec locX; 24639b6f715bSMatthew G. Knepley PetscSection section; 24649b6f715bSMatthew G. Knepley DMLabel depthLabel; 24659b6f715bSMatthew G. Knepley IS facetIS; 24669b6f715bSMatthew G. Knepley PetscInt dim, Nf, f, v; 24679b6f715bSMatthew G. Knepley 24689b6f715bSMatthew G. Knepley PetscFunctionBegin; 24699b6f715bSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 24709b6f715bSMatthew G. Knepley PetscValidHeaderSpecific(X, VEC_CLASSID, 2); 2471292bffcbSToby Isaac PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 3); 24724f572ea9SToby Isaac if (vals) PetscAssertPointer(vals, 5); 24734f572ea9SToby Isaac PetscAssertPointer(integral, 7); 24749566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DMPLEX_IntegralFEM, dm, 0, 0, 0)); 24759566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthLabel(dm, &depthLabel)); 24769566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 24779566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(depthLabel, dim - 1, &facetIS)); 24789566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, §ion)); 24799566063dSJacob Faibussowitsch PetscCall(PetscSectionGetNumFields(section, &Nf)); 24809b6f715bSMatthew G. Knepley /* Get local solution with boundary values */ 24819566063dSJacob Faibussowitsch PetscCall(DMGetLocalVector(dm, &locX)); 24829566063dSJacob Faibussowitsch PetscCall(DMPlexInsertBoundaryValues(dm, PETSC_TRUE, locX, 0.0, NULL, NULL, NULL)); 24839566063dSJacob Faibussowitsch PetscCall(DMGlobalToLocalBegin(dm, X, INSERT_VALUES, locX)); 24849566063dSJacob Faibussowitsch PetscCall(DMGlobalToLocalEnd(dm, X, INSERT_VALUES, locX)); 24859b6f715bSMatthew G. Knepley /* Loop over label values */ 24869566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(integral, Nf)); 24879b6f715bSMatthew G. Knepley for (v = 0; v < numVals; ++v) { 24889b6f715bSMatthew G. Knepley IS pointIS; 24899b6f715bSMatthew G. Knepley PetscInt numFaces, face; 24909b6f715bSMatthew G. Knepley PetscScalar *fintegral; 24919b6f715bSMatthew G. Knepley 24929566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(label, vals[v], &pointIS)); 24939b6f715bSMatthew G. Knepley if (!pointIS) continue; /* No points with that id on this process */ 24949b6f715bSMatthew G. Knepley { 24959b6f715bSMatthew G. Knepley IS isectIS; 24969b6f715bSMatthew G. Knepley 24979b6f715bSMatthew G. Knepley /* TODO: Special cases of ISIntersect where it is quick to check a priori if one is a superset of the other */ 24989566063dSJacob Faibussowitsch PetscCall(ISIntersect_Caching_Internal(facetIS, pointIS, &isectIS)); 24999566063dSJacob Faibussowitsch PetscCall(ISDestroy(&pointIS)); 25009b6f715bSMatthew G. Knepley pointIS = isectIS; 25019b6f715bSMatthew G. Knepley } 25029566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(pointIS, &numFaces)); 25039566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(numFaces * Nf, &fintegral)); 25049566063dSJacob Faibussowitsch PetscCall(DMPlexComputeBdIntegral_Internal(dm, locX, pointIS, func, fintegral, user)); 25059b6f715bSMatthew G. Knepley /* Sum point contributions into integral */ 25069371c9d4SSatish Balay for (f = 0; f < Nf; ++f) 25079371c9d4SSatish Balay for (face = 0; face < numFaces; ++face) integral[f] += fintegral[face * Nf + f]; 25089566063dSJacob Faibussowitsch PetscCall(PetscFree(fintegral)); 25099566063dSJacob Faibussowitsch PetscCall(ISDestroy(&pointIS)); 25109b6f715bSMatthew G. Knepley } 25119566063dSJacob Faibussowitsch PetscCall(DMRestoreLocalVector(dm, &locX)); 25129566063dSJacob Faibussowitsch PetscCall(ISDestroy(&facetIS)); 25139566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DMPLEX_IntegralFEM, dm, 0, 0, 0)); 25143ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 251564c72086SMatthew G. Knepley } 251664c72086SMatthew G. Knepley 2517d69c5d34SMatthew G. Knepley /*@ 2518a1cb98faSBarry Smith DMPlexComputeInterpolatorNested - Form the local portion of the interpolation matrix I from the coarse `DM` to a uniformly refined `DM`. 2519d69c5d34SMatthew G. Knepley 2520d69c5d34SMatthew G. Knepley Input Parameters: 2521cf51de39SMatthew G. Knepley + dmc - The coarse mesh 2522cf51de39SMatthew G. Knepley . dmf - The fine mesh 2523cf51de39SMatthew G. Knepley . isRefined - Flag indicating regular refinement, rather than the same topology 2524d69c5d34SMatthew G. Knepley - user - The user context 2525d69c5d34SMatthew G. Knepley 2526d69c5d34SMatthew G. Knepley Output Parameter: 2527934789fcSMatthew G. Knepley . In - The interpolation matrix 2528d69c5d34SMatthew G. Knepley 2529d69c5d34SMatthew G. Knepley Level: developer 2530d69c5d34SMatthew G. Knepley 25311cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexComputeInterpolatorGeneral()`, `DMPlexComputeJacobianFEM()` 2532d69c5d34SMatthew G. Knepley @*/ 2533d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeInterpolatorNested(DM dmc, DM dmf, PetscBool isRefined, Mat In, void *user) 2534d71ae5a4SJacob Faibussowitsch { 2535d69c5d34SMatthew G. Knepley DM_Plex *mesh = (DM_Plex *)dmc->data; 2536d69c5d34SMatthew G. Knepley const char *name = "Interpolator"; 2537d69c5d34SMatthew G. Knepley PetscFE *feRef; 253897c42addSMatthew G. Knepley PetscFV *fvRef; 2539d69c5d34SMatthew G. Knepley PetscSection fsection, fglobalSection; 2540d69c5d34SMatthew G. Knepley PetscSection csection, cglobalSection; 2541d69c5d34SMatthew G. Knepley PetscScalar *elemMat; 2542485ad865SMatthew G. Knepley PetscInt dim, Nf, f, fieldI, fieldJ, offsetI, offsetJ, cStart, cEnd, c; 25432ea9c922SToby Isaac PetscInt cTotDim = 0, rTotDim = 0; 2544d69c5d34SMatthew G. Knepley 2545d69c5d34SMatthew G. Knepley PetscFunctionBegin; 25469566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DMPLEX_InterpolatorFEM, dmc, dmf, 0, 0)); 25479566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dmf, &dim)); 25489566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dmf, &fsection)); 25499566063dSJacob Faibussowitsch PetscCall(DMGetGlobalSection(dmf, &fglobalSection)); 25509566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dmc, &csection)); 25519566063dSJacob Faibussowitsch PetscCall(DMGetGlobalSection(dmc, &cglobalSection)); 25529566063dSJacob Faibussowitsch PetscCall(PetscSectionGetNumFields(fsection, &Nf)); 25539566063dSJacob Faibussowitsch PetscCall(DMPlexGetSimplexOrBoxCells(dmc, 0, &cStart, &cEnd)); 25549566063dSJacob Faibussowitsch PetscCall(PetscCalloc2(Nf, &feRef, Nf, &fvRef)); 2555d69c5d34SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 25562ea9c922SToby Isaac PetscObject obj, objc; 25572ea9c922SToby Isaac PetscClassId id, idc; 25582ea9c922SToby Isaac PetscInt rNb = 0, Nc = 0, cNb = 0; 2559d69c5d34SMatthew G. Knepley 25609566063dSJacob Faibussowitsch PetscCall(DMGetField(dmf, f, NULL, &obj)); 25619566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 256297c42addSMatthew G. Knepley if (id == PETSCFE_CLASSID) { 256397c42addSMatthew G. Knepley PetscFE fe = (PetscFE)obj; 256497c42addSMatthew G. Knepley 2565cf51de39SMatthew G. Knepley if (isRefined) { 25669566063dSJacob Faibussowitsch PetscCall(PetscFERefine(fe, &feRef[f])); 2567cf51de39SMatthew G. Knepley } else { 25689566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)fe)); 2569cf51de39SMatthew G. Knepley feRef[f] = fe; 2570cf51de39SMatthew G. Knepley } 25719566063dSJacob Faibussowitsch PetscCall(PetscFEGetDimension(feRef[f], &rNb)); 25729566063dSJacob Faibussowitsch PetscCall(PetscFEGetNumComponents(fe, &Nc)); 257397c42addSMatthew G. Knepley } else if (id == PETSCFV_CLASSID) { 257497c42addSMatthew G. Knepley PetscFV fv = (PetscFV)obj; 257597c42addSMatthew G. Knepley PetscDualSpace Q; 257697c42addSMatthew G. Knepley 2577cf51de39SMatthew G. Knepley if (isRefined) { 25789566063dSJacob Faibussowitsch PetscCall(PetscFVRefine(fv, &fvRef[f])); 2579cf51de39SMatthew G. Knepley } else { 25809566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)fv)); 2581cf51de39SMatthew G. Knepley fvRef[f] = fv; 2582cf51de39SMatthew G. Knepley } 25839566063dSJacob Faibussowitsch PetscCall(PetscFVGetDualSpace(fvRef[f], &Q)); 25849566063dSJacob Faibussowitsch PetscCall(PetscDualSpaceGetDimension(Q, &rNb)); 25859566063dSJacob Faibussowitsch PetscCall(PetscFVGetDualSpace(fv, &Q)); 25869566063dSJacob Faibussowitsch PetscCall(PetscFVGetNumComponents(fv, &Nc)); 258797c42addSMatthew G. Knepley } 25889566063dSJacob Faibussowitsch PetscCall(DMGetField(dmc, f, NULL, &objc)); 25899566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(objc, &idc)); 25902ea9c922SToby Isaac if (idc == PETSCFE_CLASSID) { 25912ea9c922SToby Isaac PetscFE fe = (PetscFE)objc; 25922ea9c922SToby Isaac 25939566063dSJacob Faibussowitsch PetscCall(PetscFEGetDimension(fe, &cNb)); 25942ea9c922SToby Isaac } else if (id == PETSCFV_CLASSID) { 25952ea9c922SToby Isaac PetscFV fv = (PetscFV)obj; 25962ea9c922SToby Isaac PetscDualSpace Q; 25972ea9c922SToby Isaac 25989566063dSJacob Faibussowitsch PetscCall(PetscFVGetDualSpace(fv, &Q)); 25999566063dSJacob Faibussowitsch PetscCall(PetscDualSpaceGetDimension(Q, &cNb)); 2600d69c5d34SMatthew G. Knepley } 26012ea9c922SToby Isaac rTotDim += rNb; 26022ea9c922SToby Isaac cTotDim += cNb; 26032ea9c922SToby Isaac } 26049566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(rTotDim * cTotDim, &elemMat)); 26059566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(elemMat, rTotDim * cTotDim)); 2606d69c5d34SMatthew G. Knepley for (fieldI = 0, offsetI = 0; fieldI < Nf; ++fieldI) { 2607d69c5d34SMatthew G. Knepley PetscDualSpace Qref; 2608d69c5d34SMatthew G. Knepley PetscQuadrature f; 2609d69c5d34SMatthew G. Knepley const PetscReal *qpoints, *qweights; 2610d69c5d34SMatthew G. Knepley PetscReal *points; 2611d69c5d34SMatthew G. Knepley PetscInt npoints = 0, Nc, Np, fpdim, i, k, p, d; 2612d69c5d34SMatthew G. Knepley 2613d69c5d34SMatthew G. Knepley /* Compose points from all dual basis functionals */ 261497c42addSMatthew G. Knepley if (feRef[fieldI]) { 26159566063dSJacob Faibussowitsch PetscCall(PetscFEGetDualSpace(feRef[fieldI], &Qref)); 26169566063dSJacob Faibussowitsch PetscCall(PetscFEGetNumComponents(feRef[fieldI], &Nc)); 261797c42addSMatthew G. Knepley } else { 26189566063dSJacob Faibussowitsch PetscCall(PetscFVGetDualSpace(fvRef[fieldI], &Qref)); 26199566063dSJacob Faibussowitsch PetscCall(PetscFVGetNumComponents(fvRef[fieldI], &Nc)); 262097c42addSMatthew G. Knepley } 26219566063dSJacob Faibussowitsch PetscCall(PetscDualSpaceGetDimension(Qref, &fpdim)); 2622d69c5d34SMatthew G. Knepley for (i = 0; i < fpdim; ++i) { 26239566063dSJacob Faibussowitsch PetscCall(PetscDualSpaceGetFunctional(Qref, i, &f)); 26249566063dSJacob Faibussowitsch PetscCall(PetscQuadratureGetData(f, NULL, NULL, &Np, NULL, NULL)); 2625d69c5d34SMatthew G. Knepley npoints += Np; 2626d69c5d34SMatthew G. Knepley } 26279566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(npoints * dim, &points)); 2628d69c5d34SMatthew G. Knepley for (i = 0, k = 0; i < fpdim; ++i) { 26299566063dSJacob Faibussowitsch PetscCall(PetscDualSpaceGetFunctional(Qref, i, &f)); 26309566063dSJacob Faibussowitsch PetscCall(PetscQuadratureGetData(f, NULL, NULL, &Np, &qpoints, NULL)); 26319371c9d4SSatish Balay for (p = 0; p < Np; ++p, ++k) 26329371c9d4SSatish Balay for (d = 0; d < dim; ++d) points[k * dim + d] = qpoints[p * dim + d]; 2633d69c5d34SMatthew G. Knepley } 2634d69c5d34SMatthew G. Knepley 2635d69c5d34SMatthew G. Knepley for (fieldJ = 0, offsetJ = 0; fieldJ < Nf; ++fieldJ) { 263697c42addSMatthew G. Knepley PetscObject obj; 263797c42addSMatthew G. Knepley PetscClassId id; 26389c3cf19fSMatthew G. Knepley PetscInt NcJ = 0, cpdim = 0, j, qNc; 2639d69c5d34SMatthew G. Knepley 26409566063dSJacob Faibussowitsch PetscCall(DMGetField(dmc, fieldJ, NULL, &obj)); 26419566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 264297c42addSMatthew G. Knepley if (id == PETSCFE_CLASSID) { 264397c42addSMatthew G. Knepley PetscFE fe = (PetscFE)obj; 2644ef0bb6c7SMatthew G. Knepley PetscTabulation T = NULL; 2645d69c5d34SMatthew G. Knepley 2646d69c5d34SMatthew G. Knepley /* Evaluate basis at points */ 26479566063dSJacob Faibussowitsch PetscCall(PetscFEGetNumComponents(fe, &NcJ)); 26489566063dSJacob Faibussowitsch PetscCall(PetscFEGetDimension(fe, &cpdim)); 2649ffe73a53SMatthew G. Knepley /* For now, fields only interpolate themselves */ 2650ffe73a53SMatthew G. Knepley if (fieldI == fieldJ) { 265163a3b9bcSJacob Faibussowitsch PetscCheck(Nc == NcJ, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of components in fine space field %" PetscInt_FMT " does not match coarse field %" PetscInt_FMT, Nc, NcJ); 26529566063dSJacob Faibussowitsch PetscCall(PetscFECreateTabulation(fe, 1, npoints, points, 0, &T)); 2653d69c5d34SMatthew G. Knepley for (i = 0, k = 0; i < fpdim; ++i) { 26549566063dSJacob Faibussowitsch PetscCall(PetscDualSpaceGetFunctional(Qref, i, &f)); 26559566063dSJacob Faibussowitsch PetscCall(PetscQuadratureGetData(f, NULL, &qNc, &Np, NULL, &qweights)); 265663a3b9bcSJacob Faibussowitsch PetscCheck(qNc == NcJ, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of components in quadrature %" PetscInt_FMT " does not match coarse field %" PetscInt_FMT, qNc, NcJ); 2657d69c5d34SMatthew G. Knepley for (p = 0; p < Np; ++p, ++k) { 265836a6d9c0SMatthew G. Knepley for (j = 0; j < cpdim; ++j) { 2659d172c84bSMatthew G. Knepley /* 2660d172c84bSMatthew G. Knepley cTotDim: Total columns in element interpolation matrix, sum of number of dual basis functionals in each field 2661d172c84bSMatthew G. Knepley offsetI, offsetJ: Offsets into the larger element interpolation matrix for different fields 2662d172c84bSMatthew G. Knepley fpdim, i, cpdim, j: Dofs for fine and coarse grids, correspond to dual space basis functionals 2663d172c84bSMatthew G. Knepley qNC, Nc, Ncj, c: Number of components in this field 2664d172c84bSMatthew G. Knepley Np, p: Number of quad points in the fine grid functional i 2665d172c84bSMatthew G. Knepley k: i*Np + p, overall point number for the interpolation 2666d172c84bSMatthew G. Knepley */ 2667ef0bb6c7SMatthew G. Knepley for (c = 0; c < Nc; ++c) elemMat[(offsetI + i) * cTotDim + offsetJ + j] += T->T[0][k * cpdim * NcJ + j * Nc + c] * qweights[p * qNc + c]; 266836a6d9c0SMatthew G. Knepley } 2669d69c5d34SMatthew G. Knepley } 2670d69c5d34SMatthew G. Knepley } 26719566063dSJacob Faibussowitsch PetscCall(PetscTabulationDestroy(&T)); 2672ffe73a53SMatthew G. Knepley } 267397c42addSMatthew G. Knepley } else if (id == PETSCFV_CLASSID) { 267497c42addSMatthew G. Knepley PetscFV fv = (PetscFV)obj; 267597c42addSMatthew G. Knepley 267697c42addSMatthew G. Knepley /* Evaluate constant function at points */ 26779566063dSJacob Faibussowitsch PetscCall(PetscFVGetNumComponents(fv, &NcJ)); 267897c42addSMatthew G. Knepley cpdim = 1; 267997c42addSMatthew G. Knepley /* For now, fields only interpolate themselves */ 268097c42addSMatthew G. Knepley if (fieldI == fieldJ) { 268163a3b9bcSJacob Faibussowitsch PetscCheck(Nc == NcJ, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of components in fine space field %" PetscInt_FMT " does not match coarse field %" PetscInt_FMT, Nc, NcJ); 268297c42addSMatthew G. Knepley for (i = 0, k = 0; i < fpdim; ++i) { 26839566063dSJacob Faibussowitsch PetscCall(PetscDualSpaceGetFunctional(Qref, i, &f)); 26849566063dSJacob Faibussowitsch PetscCall(PetscQuadratureGetData(f, NULL, &qNc, &Np, NULL, &qweights)); 268563a3b9bcSJacob Faibussowitsch PetscCheck(qNc == NcJ, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of components in quadrature %" PetscInt_FMT " does not match coarse field %" PetscInt_FMT, qNc, NcJ); 268697c42addSMatthew G. Knepley for (p = 0; p < Np; ++p, ++k) { 268797c42addSMatthew G. Knepley for (j = 0; j < cpdim; ++j) { 2688458eb97cSMatthew G. Knepley for (c = 0; c < Nc; ++c) elemMat[(offsetI + i) * cTotDim + offsetJ + j] += 1.0 * qweights[p * qNc + c]; 268997c42addSMatthew G. Knepley } 269097c42addSMatthew G. Knepley } 269197c42addSMatthew G. Knepley } 269297c42addSMatthew G. Knepley } 269397c42addSMatthew G. Knepley } 2694d172c84bSMatthew G. Knepley offsetJ += cpdim; 2695d69c5d34SMatthew G. Knepley } 2696d172c84bSMatthew G. Knepley offsetI += fpdim; 26979566063dSJacob Faibussowitsch PetscCall(PetscFree(points)); 2698d69c5d34SMatthew G. Knepley } 26999566063dSJacob Faibussowitsch if (mesh->printFEM > 1) PetscCall(DMPrintCellMatrix(0, name, rTotDim, cTotDim, elemMat)); 27007f5b169aSMatthew G. Knepley /* Preallocate matrix */ 27017f5b169aSMatthew G. Knepley { 2702c094ef40SMatthew G. Knepley Mat preallocator; 2703c094ef40SMatthew G. Knepley PetscScalar *vals; 2704c094ef40SMatthew G. Knepley PetscInt *cellCIndices, *cellFIndices; 2705c094ef40SMatthew G. Knepley PetscInt locRows, locCols, cell; 27067f5b169aSMatthew G. Knepley 27079566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(In, &locRows, &locCols)); 27089566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)In), &preallocator)); 27099566063dSJacob Faibussowitsch PetscCall(MatSetType(preallocator, MATPREALLOCATOR)); 27109566063dSJacob Faibussowitsch PetscCall(MatSetSizes(preallocator, locRows, locCols, PETSC_DETERMINE, PETSC_DETERMINE)); 27119566063dSJacob Faibussowitsch PetscCall(MatSetUp(preallocator)); 27129566063dSJacob Faibussowitsch PetscCall(PetscCalloc3(rTotDim * cTotDim, &vals, cTotDim, &cellCIndices, rTotDim, &cellFIndices)); 27137f5b169aSMatthew G. Knepley for (cell = cStart; cell < cEnd; ++cell) { 2714cf51de39SMatthew G. Knepley if (isRefined) { 27159566063dSJacob Faibussowitsch PetscCall(DMPlexMatGetClosureIndicesRefined(dmf, fsection, fglobalSection, dmc, csection, cglobalSection, cell, cellCIndices, cellFIndices)); 27169566063dSJacob Faibussowitsch PetscCall(MatSetValues(preallocator, rTotDim, cellFIndices, cTotDim, cellCIndices, vals, INSERT_VALUES)); 2717cf51de39SMatthew G. Knepley } else { 27189566063dSJacob Faibussowitsch PetscCall(DMPlexMatSetClosureGeneral(dmf, fsection, fglobalSection, dmc, csection, cglobalSection, preallocator, cell, vals, INSERT_VALUES)); 2719cf51de39SMatthew G. Knepley } 27207f5b169aSMatthew G. Knepley } 27219566063dSJacob Faibussowitsch PetscCall(PetscFree3(vals, cellCIndices, cellFIndices)); 27229566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(preallocator, MAT_FINAL_ASSEMBLY)); 27239566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(preallocator, MAT_FINAL_ASSEMBLY)); 27249566063dSJacob Faibussowitsch PetscCall(MatPreallocatorPreallocate(preallocator, PETSC_TRUE, In)); 27259566063dSJacob Faibussowitsch PetscCall(MatDestroy(&preallocator)); 27267f5b169aSMatthew G. Knepley } 27277f5b169aSMatthew G. Knepley /* Fill matrix */ 27289566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(In)); 2729d69c5d34SMatthew G. Knepley for (c = cStart; c < cEnd; ++c) { 2730cf51de39SMatthew G. Knepley if (isRefined) { 27319566063dSJacob Faibussowitsch PetscCall(DMPlexMatSetClosureRefined(dmf, fsection, fglobalSection, dmc, csection, cglobalSection, In, c, elemMat, INSERT_VALUES)); 2732cf51de39SMatthew G. Knepley } else { 27339566063dSJacob Faibussowitsch PetscCall(DMPlexMatSetClosureGeneral(dmf, fsection, fglobalSection, dmc, csection, cglobalSection, In, c, elemMat, INSERT_VALUES)); 2734cf51de39SMatthew G. Knepley } 2735d69c5d34SMatthew G. Knepley } 27369566063dSJacob Faibussowitsch for (f = 0; f < Nf; ++f) PetscCall(PetscFEDestroy(&feRef[f])); 27379566063dSJacob Faibussowitsch PetscCall(PetscFree2(feRef, fvRef)); 27389566063dSJacob Faibussowitsch PetscCall(PetscFree(elemMat)); 27399566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(In, MAT_FINAL_ASSEMBLY)); 27409566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(In, MAT_FINAL_ASSEMBLY)); 27419318fe57SMatthew G. Knepley if (mesh->printFEM > 1) { 27429566063dSJacob Faibussowitsch PetscCall(PetscPrintf(PetscObjectComm((PetscObject)In), "%s:\n", name)); 27432ce66baaSPierre Jolivet PetscCall(MatFilter(In, 1.0e-10, PETSC_FALSE, PETSC_FALSE)); 27449566063dSJacob Faibussowitsch PetscCall(MatView(In, NULL)); 2745d69c5d34SMatthew G. Knepley } 27469566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DMPLEX_InterpolatorFEM, dmc, dmf, 0, 0)); 27473ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2748d69c5d34SMatthew G. Knepley } 27496c73c22cSMatthew G. Knepley 2750d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeMassMatrixNested(DM dmc, DM dmf, Mat mass, void *user) 2751d71ae5a4SJacob Faibussowitsch { 2752bd041c0cSMatthew G. Knepley SETERRQ(PetscObjectComm((PetscObject)dmc), PETSC_ERR_SUP, "Laziness"); 2753bd041c0cSMatthew G. Knepley } 2754bd041c0cSMatthew G. Knepley 275568132eb9SMatthew G. Knepley /*@ 2756a1cb98faSBarry Smith DMPlexComputeInterpolatorGeneral - Form the local portion of the interpolation matrix I from the coarse `DM` to a non-nested fine `DM`. 275768132eb9SMatthew G. Knepley 275868132eb9SMatthew G. Knepley Input Parameters: 275968132eb9SMatthew G. Knepley + dmf - The fine mesh 276068132eb9SMatthew G. Knepley . dmc - The coarse mesh 276168132eb9SMatthew G. Knepley - user - The user context 276268132eb9SMatthew G. Knepley 276368132eb9SMatthew G. Knepley Output Parameter: 276468132eb9SMatthew G. Knepley . In - The interpolation matrix 276568132eb9SMatthew G. Knepley 276668132eb9SMatthew G. Knepley Level: developer 276768132eb9SMatthew G. Knepley 27681cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexComputeInterpolatorNested()`, `DMPlexComputeJacobianFEM()` 276968132eb9SMatthew G. Knepley @*/ 2770d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeInterpolatorGeneral(DM dmc, DM dmf, Mat In, void *user) 2771d71ae5a4SJacob Faibussowitsch { 277264e98e1dSMatthew G. Knepley DM_Plex *mesh = (DM_Plex *)dmf->data; 277364e98e1dSMatthew G. Knepley const char *name = "Interpolator"; 27744ef9d792SMatthew G. Knepley PetscDS prob; 2775a0806964SMatthew G. Knepley Mat interp; 2776a0806964SMatthew G. Knepley PetscSection fsection, globalFSection; 2777a0806964SMatthew G. Knepley PetscSection csection, globalCSection; 2778a0806964SMatthew G. Knepley PetscInt locRows, locCols; 27794ef9d792SMatthew G. Knepley PetscReal *x, *v0, *J, *invJ, detJ; 27804ef9d792SMatthew G. Knepley PetscReal *v0c, *Jc, *invJc, detJc; 27814ef9d792SMatthew G. Knepley PetscScalar *elemMat; 2782a0806964SMatthew G. Knepley PetscInt dim, Nf, field, totDim, cStart, cEnd, cell, ccell, s; 27834ef9d792SMatthew G. Knepley 27844ef9d792SMatthew G. Knepley PetscFunctionBegin; 27859566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DMPLEX_InterpolatorFEM, dmc, dmf, 0, 0)); 27869566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDim(dmc, &dim)); 27879566063dSJacob Faibussowitsch PetscCall(DMGetDS(dmc, &prob)); 27889566063dSJacob Faibussowitsch PetscCall(PetscDSGetWorkspace(prob, &x, NULL, NULL, NULL, NULL)); 27899566063dSJacob Faibussowitsch PetscCall(PetscDSGetNumFields(prob, &Nf)); 27909566063dSJacob Faibussowitsch PetscCall(PetscMalloc3(dim, &v0, dim * dim, &J, dim * dim, &invJ)); 27919566063dSJacob Faibussowitsch PetscCall(PetscMalloc3(dim, &v0c, dim * dim, &Jc, dim * dim, &invJc)); 27929566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dmf, &fsection)); 27939566063dSJacob Faibussowitsch PetscCall(DMGetGlobalSection(dmf, &globalFSection)); 27949566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dmc, &csection)); 27959566063dSJacob Faibussowitsch PetscCall(DMGetGlobalSection(dmc, &globalCSection)); 2796a0806964SMatthew G. Knepley PetscCall(DMPlexGetSimplexOrBoxCells(dmf, 0, &cStart, &cEnd)); 27979566063dSJacob Faibussowitsch PetscCall(PetscDSGetTotalDimension(prob, &totDim)); 27989566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(totDim, &elemMat)); 27994ef9d792SMatthew G. Knepley 2800a0806964SMatthew G. Knepley PetscCall(MatGetLocalSize(In, &locRows, &locCols)); 2801a0806964SMatthew G. Knepley PetscCall(MatCreate(PetscObjectComm((PetscObject)In), &interp)); 2802a0806964SMatthew G. Knepley PetscCall(MatSetType(interp, MATPREALLOCATOR)); 2803a0806964SMatthew G. Knepley PetscCall(MatSetSizes(interp, locRows, locCols, PETSC_DETERMINE, PETSC_DETERMINE)); 2804a0806964SMatthew G. Knepley PetscCall(MatSetUp(interp)); 2805a0806964SMatthew G. Knepley for (s = 0; s < 2; ++s) { 28064ef9d792SMatthew G. Knepley for (field = 0; field < Nf; ++field) { 28074ef9d792SMatthew G. Knepley PetscObject obj; 28084ef9d792SMatthew G. Knepley PetscClassId id; 2809c0d7054bSMatthew G. Knepley PetscDualSpace Q = NULL; 2810ef0bb6c7SMatthew G. Knepley PetscTabulation T = NULL; 28114ef9d792SMatthew G. Knepley PetscQuadrature f; 28124ef9d792SMatthew G. Knepley const PetscReal *qpoints, *qweights; 2813d0f6233fSMatthew G. Knepley PetscInt Nc, qNc, Np, fpdim, off, i, d; 28144ef9d792SMatthew G. Knepley 2815d0f6233fSMatthew G. Knepley PetscCall(PetscDSGetFieldOffset(prob, field, &off)); 28169566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(prob, field, &obj)); 28179566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 28184ef9d792SMatthew G. Knepley if (id == PETSCFE_CLASSID) { 28194ef9d792SMatthew G. Knepley PetscFE fe = (PetscFE)obj; 28204ef9d792SMatthew G. Knepley 28219566063dSJacob Faibussowitsch PetscCall(PetscFEGetDualSpace(fe, &Q)); 28229566063dSJacob Faibussowitsch PetscCall(PetscFEGetNumComponents(fe, &Nc)); 2823a0806964SMatthew G. Knepley if (s) PetscCall(PetscFECreateTabulation(fe, 1, 1, x, 0, &T)); 28244ef9d792SMatthew G. Knepley } else if (id == PETSCFV_CLASSID) { 28254ef9d792SMatthew G. Knepley PetscFV fv = (PetscFV)obj; 28264ef9d792SMatthew G. Knepley 28279566063dSJacob Faibussowitsch PetscCall(PetscFVGetDualSpace(fv, &Q)); 28284ef9d792SMatthew G. Knepley Nc = 1; 282963a3b9bcSJacob Faibussowitsch } else SETERRQ(PetscObjectComm((PetscObject)dmc), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, field); 28309566063dSJacob Faibussowitsch PetscCall(PetscDualSpaceGetDimension(Q, &fpdim)); 28314ef9d792SMatthew G. Knepley /* For each fine grid cell */ 28324ef9d792SMatthew G. Knepley for (cell = cStart; cell < cEnd; ++cell) { 28334ef9d792SMatthew G. Knepley PetscInt *findices, *cindices; 28344ef9d792SMatthew G. Knepley PetscInt numFIndices, numCIndices; 28354ef9d792SMatthew G. Knepley 28369566063dSJacob Faibussowitsch PetscCall(DMPlexGetClosureIndices(dmf, fsection, globalFSection, cell, PETSC_FALSE, &numFIndices, &findices, NULL, NULL)); 28379566063dSJacob Faibussowitsch PetscCall(DMPlexComputeCellGeometryFEM(dmf, cell, NULL, v0, J, invJ, &detJ)); 2838d0f6233fSMatthew G. Knepley PetscCheck(numFIndices == totDim, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of fine indices %" PetscInt_FMT " != %" PetscInt_FMT " dual basis vecs", numFIndices, totDim); 28394ef9d792SMatthew G. Knepley for (i = 0; i < fpdim; ++i) { 28404ef9d792SMatthew G. Knepley Vec pointVec; 28414ef9d792SMatthew G. Knepley PetscScalar *pV; 284212111d7cSToby Isaac PetscSF coarseCellSF = NULL; 28433a93e3b7SToby Isaac const PetscSFNode *coarseCells; 2844d0f6233fSMatthew G. Knepley PetscInt numCoarseCells, cpdim, row = findices[i + off], q, c, j; 28454ef9d792SMatthew G. Knepley 28464ef9d792SMatthew G. Knepley /* Get points from the dual basis functional quadrature */ 28479566063dSJacob Faibussowitsch PetscCall(PetscDualSpaceGetFunctional(Q, i, &f)); 28489566063dSJacob Faibussowitsch PetscCall(PetscQuadratureGetData(f, NULL, &qNc, &Np, &qpoints, &qweights)); 284963a3b9bcSJacob Faibussowitsch PetscCheck(qNc == Nc, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of components in quadrature %" PetscInt_FMT " does not match coarse field %" PetscInt_FMT, qNc, Nc); 28509566063dSJacob Faibussowitsch PetscCall(VecCreateSeq(PETSC_COMM_SELF, Np * dim, &pointVec)); 28519566063dSJacob Faibussowitsch PetscCall(VecSetBlockSize(pointVec, dim)); 28529566063dSJacob Faibussowitsch PetscCall(VecGetArray(pointVec, &pV)); 28534ef9d792SMatthew G. Knepley for (q = 0; q < Np; ++q) { 2854c330f8ffSToby Isaac const PetscReal xi0[3] = {-1., -1., -1.}; 2855c330f8ffSToby Isaac 28564ef9d792SMatthew G. Knepley /* Transform point to real space */ 2857c330f8ffSToby Isaac CoordinatesRefToReal(dim, dim, xi0, v0, J, &qpoints[q * dim], x); 28584ef9d792SMatthew G. Knepley for (d = 0; d < dim; ++d) pV[q * dim + d] = x[d]; 28594ef9d792SMatthew G. Knepley } 28609566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(pointVec, &pV)); 28614ef9d792SMatthew G. Knepley /* Get set of coarse cells that overlap points (would like to group points by coarse cell) */ 28621555c271SMatthew G. Knepley /* OPT: Read this out from preallocation information */ 28639566063dSJacob Faibussowitsch PetscCall(DMLocatePoints(dmc, pointVec, DM_POINTLOCATION_NEAREST, &coarseCellSF)); 28644ef9d792SMatthew G. Knepley /* Update preallocation info */ 28659566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(coarseCellSF, NULL, &numCoarseCells, NULL, &coarseCells)); 28665f80ce2aSJacob Faibussowitsch PetscCheck(numCoarseCells == Np, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Not all closure points located"); 28679566063dSJacob Faibussowitsch PetscCall(VecGetArray(pointVec, &pV)); 28684ef9d792SMatthew G. Knepley for (ccell = 0; ccell < numCoarseCells; ++ccell) { 2869826eb36dSMatthew G. Knepley PetscReal pVReal[3]; 2870c330f8ffSToby Isaac const PetscReal xi0[3] = {-1., -1., -1.}; 2871826eb36dSMatthew G. Knepley 28729566063dSJacob Faibussowitsch PetscCall(DMPlexGetClosureIndices(dmc, csection, globalCSection, coarseCells[ccell].index, PETSC_FALSE, &numCIndices, &cindices, NULL, NULL)); 2873a0806964SMatthew G. Knepley if (id == PETSCFE_CLASSID) PetscCall(PetscFEGetDimension((PetscFE)obj, &cpdim)); 2874a0806964SMatthew G. Knepley else cpdim = 1; 2875a0806964SMatthew G. Knepley 2876a0806964SMatthew G. Knepley if (s) { 28774ef9d792SMatthew G. Knepley /* Transform points from real space to coarse reference space */ 28789566063dSJacob Faibussowitsch PetscCall(DMPlexComputeCellGeometryFEM(dmc, coarseCells[ccell].index, NULL, v0c, Jc, invJc, &detJc)); 2879e2d86523SMatthew G. Knepley for (d = 0; d < dim; ++d) pVReal[d] = PetscRealPart(pV[ccell * dim + d]); 2880c330f8ffSToby Isaac CoordinatesRealToRef(dim, dim, xi0, v0c, invJc, pVReal, x); 28814ef9d792SMatthew G. Knepley 28824ef9d792SMatthew G. Knepley if (id == PETSCFE_CLASSID) { 28834ef9d792SMatthew G. Knepley /* Evaluate coarse basis on contained point */ 2884a0806964SMatthew G. Knepley PetscCall(PetscFEComputeTabulation((PetscFE)obj, 1, x, 0, T)); 28859566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(elemMat, cpdim)); 28864ef9d792SMatthew G. Knepley /* Get elemMat entries by multiplying by weight */ 28874ef9d792SMatthew G. Knepley for (j = 0; j < cpdim; ++j) { 2888ef0bb6c7SMatthew G. Knepley for (c = 0; c < Nc; ++c) elemMat[j] += T->T[0][j * Nc + c] * qweights[ccell * qNc + c]; 28894ef9d792SMatthew G. Knepley } 28904ef9d792SMatthew G. Knepley } else { 28914ef9d792SMatthew G. Knepley for (j = 0; j < cpdim; ++j) { 28929c3cf19fSMatthew G. Knepley for (c = 0; c < Nc; ++c) elemMat[j] += 1.0 * qweights[ccell * qNc + c]; 28934ef9d792SMatthew G. Knepley } 28944ef9d792SMatthew G. Knepley } 28959566063dSJacob Faibussowitsch if (mesh->printFEM > 1) PetscCall(DMPrintCellMatrix(cell, name, 1, numCIndices, elemMat)); 2896a0806964SMatthew G. Knepley } 2897a0806964SMatthew G. Knepley /* Update interpolator */ 2898d0f6233fSMatthew G. Knepley PetscCheck(numCIndices == totDim, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Number of element matrix columns %" PetscInt_FMT " != %" PetscInt_FMT, numCIndices, totDim); 2899a0806964SMatthew G. Knepley PetscCall(MatSetValues(interp, 1, &row, cpdim, &cindices[off], elemMat, INSERT_VALUES)); 29009566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreClosureIndices(dmc, csection, globalCSection, coarseCells[ccell].index, PETSC_FALSE, &numCIndices, &cindices, NULL, NULL)); 29014ef9d792SMatthew G. Knepley } 29029566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(pointVec, &pV)); 29039566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&coarseCellSF)); 29049566063dSJacob Faibussowitsch PetscCall(VecDestroy(&pointVec)); 29054ef9d792SMatthew G. Knepley } 29069566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreClosureIndices(dmf, fsection, globalFSection, cell, PETSC_FALSE, &numFIndices, &findices, NULL, NULL)); 29074ef9d792SMatthew G. Knepley } 2908a0806964SMatthew G. Knepley if (s && id == PETSCFE_CLASSID) PetscCall(PetscTabulationDestroy(&T)); 2909a0806964SMatthew G. Knepley } 2910a0806964SMatthew G. Knepley if (!s) { 2911a0806964SMatthew G. Knepley PetscCall(MatAssemblyBegin(interp, MAT_FINAL_ASSEMBLY)); 2912a0806964SMatthew G. Knepley PetscCall(MatAssemblyEnd(interp, MAT_FINAL_ASSEMBLY)); 2913a0806964SMatthew G. Knepley PetscCall(MatPreallocatorPreallocate(interp, PETSC_TRUE, In)); 2914a0806964SMatthew G. Knepley PetscCall(MatDestroy(&interp)); 2915a0806964SMatthew G. Knepley interp = In; 2916a0806964SMatthew G. Knepley } 29174ef9d792SMatthew G. Knepley } 29189566063dSJacob Faibussowitsch PetscCall(PetscFree3(v0, J, invJ)); 29199566063dSJacob Faibussowitsch PetscCall(PetscFree3(v0c, Jc, invJc)); 29209566063dSJacob Faibussowitsch PetscCall(PetscFree(elemMat)); 29219566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(In, MAT_FINAL_ASSEMBLY)); 29229566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(In, MAT_FINAL_ASSEMBLY)); 29239566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DMPLEX_InterpolatorFEM, dmc, dmf, 0, 0)); 29243ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 29254ef9d792SMatthew G. Knepley } 29264ef9d792SMatthew G. Knepley 292746fa42a0SMatthew G. Knepley /*@ 2928a1cb98faSBarry Smith DMPlexComputeMassMatrixGeneral - Form the local portion of the mass matrix M from the coarse `DM` to a non-nested fine `DM`. 2929bd041c0cSMatthew G. Knepley 2930bd041c0cSMatthew G. Knepley Input Parameters: 2931bd041c0cSMatthew G. Knepley + dmf - The fine mesh 2932bd041c0cSMatthew G. Knepley . dmc - The coarse mesh 2933bd041c0cSMatthew G. Knepley - user - The user context 2934bd041c0cSMatthew G. Knepley 2935bd041c0cSMatthew G. Knepley Output Parameter: 2936bd041c0cSMatthew G. Knepley . mass - The mass matrix 2937bd041c0cSMatthew G. Knepley 2938bd041c0cSMatthew G. Knepley Level: developer 2939bd041c0cSMatthew G. Knepley 29401cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexComputeMassMatrixNested()`, `DMPlexComputeInterpolatorNested()`, `DMPlexComputeInterpolatorGeneral()`, `DMPlexComputeJacobianFEM()` 2941bd041c0cSMatthew G. Knepley @*/ 2942d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeMassMatrixGeneral(DM dmc, DM dmf, Mat mass, void *user) 2943d71ae5a4SJacob Faibussowitsch { 2944bd041c0cSMatthew G. Knepley DM_Plex *mesh = (DM_Plex *)dmf->data; 2945bd041c0cSMatthew G. Knepley const char *name = "Mass Matrix"; 2946bd041c0cSMatthew G. Knepley PetscDS prob; 2947bd041c0cSMatthew G. Knepley PetscSection fsection, csection, globalFSection, globalCSection; 2948e8f14785SLisandro Dalcin PetscHSetIJ ht; 2949bd041c0cSMatthew G. Knepley PetscLayout rLayout; 2950bd041c0cSMatthew G. Knepley PetscInt *dnz, *onz; 2951bd041c0cSMatthew G. Knepley PetscInt locRows, rStart, rEnd; 2952bd041c0cSMatthew G. Knepley PetscReal *x, *v0, *J, *invJ, detJ; 2953bd041c0cSMatthew G. Knepley PetscReal *v0c, *Jc, *invJc, detJc; 2954bd041c0cSMatthew G. Knepley PetscScalar *elemMat; 2955bd041c0cSMatthew G. Knepley PetscInt dim, Nf, field, totDim, cStart, cEnd, cell, ccell; 2956bd041c0cSMatthew G. Knepley 2957bd041c0cSMatthew G. Knepley PetscFunctionBegin; 29589566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDim(dmc, &dim)); 29599566063dSJacob Faibussowitsch PetscCall(DMGetDS(dmc, &prob)); 29609566063dSJacob Faibussowitsch PetscCall(PetscDSGetWorkspace(prob, &x, NULL, NULL, NULL, NULL)); 29619566063dSJacob Faibussowitsch PetscCall(PetscDSGetNumFields(prob, &Nf)); 29629566063dSJacob Faibussowitsch PetscCall(PetscMalloc3(dim, &v0, dim * dim, &J, dim * dim, &invJ)); 29639566063dSJacob Faibussowitsch PetscCall(PetscMalloc3(dim, &v0c, dim * dim, &Jc, dim * dim, &invJc)); 29649566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dmf, &fsection)); 29659566063dSJacob Faibussowitsch PetscCall(DMGetGlobalSection(dmf, &globalFSection)); 29669566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dmc, &csection)); 29679566063dSJacob Faibussowitsch PetscCall(DMGetGlobalSection(dmc, &globalCSection)); 29689566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(dmf, 0, &cStart, &cEnd)); 29699566063dSJacob Faibussowitsch PetscCall(PetscDSGetTotalDimension(prob, &totDim)); 29709566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(totDim, &elemMat)); 2971bd041c0cSMatthew G. Knepley 29729566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(mass, &locRows, NULL)); 29739566063dSJacob Faibussowitsch PetscCall(PetscLayoutCreate(PetscObjectComm((PetscObject)mass), &rLayout)); 29749566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetLocalSize(rLayout, locRows)); 29759566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetBlockSize(rLayout, 1)); 29769566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(rLayout)); 29779566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetRange(rLayout, &rStart, &rEnd)); 29789566063dSJacob Faibussowitsch PetscCall(PetscLayoutDestroy(&rLayout)); 29799566063dSJacob Faibussowitsch PetscCall(PetscCalloc2(locRows, &dnz, locRows, &onz)); 29809566063dSJacob Faibussowitsch PetscCall(PetscHSetIJCreate(&ht)); 2981bd041c0cSMatthew G. Knepley for (field = 0; field < Nf; ++field) { 2982bd041c0cSMatthew G. Knepley PetscObject obj; 2983bd041c0cSMatthew G. Knepley PetscClassId id; 2984bd041c0cSMatthew G. Knepley PetscQuadrature quad; 2985bd041c0cSMatthew G. Knepley const PetscReal *qpoints; 2986bd041c0cSMatthew G. Knepley PetscInt Nq, Nc, i, d; 2987bd041c0cSMatthew G. Knepley 29889566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(prob, field, &obj)); 29899566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 29909566063dSJacob Faibussowitsch if (id == PETSCFE_CLASSID) PetscCall(PetscFEGetQuadrature((PetscFE)obj, &quad)); 29919566063dSJacob Faibussowitsch else PetscCall(PetscFVGetQuadrature((PetscFV)obj, &quad)); 29929566063dSJacob Faibussowitsch PetscCall(PetscQuadratureGetData(quad, NULL, &Nc, &Nq, &qpoints, NULL)); 2993bd041c0cSMatthew G. Knepley /* For each fine grid cell */ 2994bd041c0cSMatthew G. Knepley for (cell = cStart; cell < cEnd; ++cell) { 2995bd041c0cSMatthew G. Knepley Vec pointVec; 2996bd041c0cSMatthew G. Knepley PetscScalar *pV; 2997bd041c0cSMatthew G. Knepley PetscSF coarseCellSF = NULL; 2998bd041c0cSMatthew G. Knepley const PetscSFNode *coarseCells; 2999bd041c0cSMatthew G. Knepley PetscInt numCoarseCells, q, c; 3000bd041c0cSMatthew G. Knepley PetscInt *findices, *cindices; 3001bd041c0cSMatthew G. Knepley PetscInt numFIndices, numCIndices; 3002bd041c0cSMatthew G. Knepley 30039566063dSJacob Faibussowitsch PetscCall(DMPlexGetClosureIndices(dmf, fsection, globalFSection, cell, PETSC_FALSE, &numFIndices, &findices, NULL, NULL)); 30049566063dSJacob Faibussowitsch PetscCall(DMPlexComputeCellGeometryFEM(dmf, cell, NULL, v0, J, invJ, &detJ)); 3005bd041c0cSMatthew G. Knepley /* Get points from the quadrature */ 30069566063dSJacob Faibussowitsch PetscCall(VecCreateSeq(PETSC_COMM_SELF, Nq * dim, &pointVec)); 30079566063dSJacob Faibussowitsch PetscCall(VecSetBlockSize(pointVec, dim)); 30089566063dSJacob Faibussowitsch PetscCall(VecGetArray(pointVec, &pV)); 3009bd041c0cSMatthew G. Knepley for (q = 0; q < Nq; ++q) { 3010c330f8ffSToby Isaac const PetscReal xi0[3] = {-1., -1., -1.}; 3011c330f8ffSToby Isaac 3012bd041c0cSMatthew G. Knepley /* Transform point to real space */ 3013c330f8ffSToby Isaac CoordinatesRefToReal(dim, dim, xi0, v0, J, &qpoints[q * dim], x); 3014bd041c0cSMatthew G. Knepley for (d = 0; d < dim; ++d) pV[q * dim + d] = x[d]; 3015bd041c0cSMatthew G. Knepley } 30169566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(pointVec, &pV)); 3017bd041c0cSMatthew G. Knepley /* Get set of coarse cells that overlap points (would like to group points by coarse cell) */ 30189566063dSJacob Faibussowitsch PetscCall(DMLocatePoints(dmc, pointVec, DM_POINTLOCATION_NEAREST, &coarseCellSF)); 30199566063dSJacob Faibussowitsch PetscCall(PetscSFViewFromOptions(coarseCellSF, NULL, "-interp_sf_view")); 3020bd041c0cSMatthew G. Knepley /* Update preallocation info */ 30219566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(coarseCellSF, NULL, &numCoarseCells, NULL, &coarseCells)); 30225f80ce2aSJacob Faibussowitsch PetscCheck(numCoarseCells == Nq, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Not all closure points located"); 3023bd041c0cSMatthew G. Knepley { 3024e8f14785SLisandro Dalcin PetscHashIJKey key; 3025e8f14785SLisandro Dalcin PetscBool missing; 3026bd041c0cSMatthew G. Knepley 3027bd041c0cSMatthew G. Knepley for (i = 0; i < numFIndices; ++i) { 3028e8f14785SLisandro Dalcin key.i = findices[i]; 3029e8f14785SLisandro Dalcin if (key.i >= 0) { 3030bd041c0cSMatthew G. Knepley /* Get indices for coarse elements */ 3031bd041c0cSMatthew G. Knepley for (ccell = 0; ccell < numCoarseCells; ++ccell) { 30329566063dSJacob Faibussowitsch PetscCall(DMPlexGetClosureIndices(dmc, csection, globalCSection, coarseCells[ccell].index, PETSC_FALSE, &numCIndices, &cindices, NULL, NULL)); 3033bd041c0cSMatthew G. Knepley for (c = 0; c < numCIndices; ++c) { 3034e8f14785SLisandro Dalcin key.j = cindices[c]; 3035e8f14785SLisandro Dalcin if (key.j < 0) continue; 30369566063dSJacob Faibussowitsch PetscCall(PetscHSetIJQueryAdd(ht, key, &missing)); 3037bd041c0cSMatthew G. Knepley if (missing) { 3038e8f14785SLisandro Dalcin if ((key.j >= rStart) && (key.j < rEnd)) ++dnz[key.i - rStart]; 3039e8f14785SLisandro Dalcin else ++onz[key.i - rStart]; 3040bd041c0cSMatthew G. Knepley } 3041bd041c0cSMatthew G. Knepley } 30429566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreClosureIndices(dmc, csection, globalCSection, coarseCells[ccell].index, PETSC_FALSE, &numCIndices, &cindices, NULL, NULL)); 3043bd041c0cSMatthew G. Knepley } 3044bd041c0cSMatthew G. Knepley } 3045bd041c0cSMatthew G. Knepley } 3046bd041c0cSMatthew G. Knepley } 30479566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&coarseCellSF)); 30489566063dSJacob Faibussowitsch PetscCall(VecDestroy(&pointVec)); 30499566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreClosureIndices(dmf, fsection, globalFSection, cell, PETSC_FALSE, &numFIndices, &findices, NULL, NULL)); 3050bd041c0cSMatthew G. Knepley } 3051bd041c0cSMatthew G. Knepley } 30529566063dSJacob Faibussowitsch PetscCall(PetscHSetIJDestroy(&ht)); 30539566063dSJacob Faibussowitsch PetscCall(MatXAIJSetPreallocation(mass, 1, dnz, onz, NULL, NULL)); 30549566063dSJacob Faibussowitsch PetscCall(MatSetOption(mass, MAT_NEW_NONZERO_ALLOCATION_ERR, PETSC_TRUE)); 30559566063dSJacob Faibussowitsch PetscCall(PetscFree2(dnz, onz)); 3056bd041c0cSMatthew G. Knepley for (field = 0; field < Nf; ++field) { 3057bd041c0cSMatthew G. Knepley PetscObject obj; 3058bd041c0cSMatthew G. Knepley PetscClassId id; 3059ef0bb6c7SMatthew G. Knepley PetscTabulation T, Tfine; 3060bd041c0cSMatthew G. Knepley PetscQuadrature quad; 3061bd041c0cSMatthew G. Knepley const PetscReal *qpoints, *qweights; 3062bd041c0cSMatthew G. Knepley PetscInt Nq, Nc, i, d; 3063bd041c0cSMatthew G. Knepley 30649566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(prob, field, &obj)); 30659566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 3066ef0bb6c7SMatthew G. Knepley if (id == PETSCFE_CLASSID) { 30679566063dSJacob Faibussowitsch PetscCall(PetscFEGetQuadrature((PetscFE)obj, &quad)); 30689566063dSJacob Faibussowitsch PetscCall(PetscFEGetCellTabulation((PetscFE)obj, 1, &Tfine)); 30699566063dSJacob Faibussowitsch PetscCall(PetscFECreateTabulation((PetscFE)obj, 1, 1, x, 0, &T)); 3070ef0bb6c7SMatthew G. Knepley } else { 30719566063dSJacob Faibussowitsch PetscCall(PetscFVGetQuadrature((PetscFV)obj, &quad)); 3072ef0bb6c7SMatthew G. Knepley } 30739566063dSJacob Faibussowitsch PetscCall(PetscQuadratureGetData(quad, NULL, &Nc, &Nq, &qpoints, &qweights)); 3074bd041c0cSMatthew G. Knepley /* For each fine grid cell */ 3075bd041c0cSMatthew G. Knepley for (cell = cStart; cell < cEnd; ++cell) { 3076bd041c0cSMatthew G. Knepley Vec pointVec; 3077bd041c0cSMatthew G. Knepley PetscScalar *pV; 3078bd041c0cSMatthew G. Knepley PetscSF coarseCellSF = NULL; 3079bd041c0cSMatthew G. Knepley const PetscSFNode *coarseCells; 3080bd041c0cSMatthew G. Knepley PetscInt numCoarseCells, cpdim, q, c, j; 3081bd041c0cSMatthew G. Knepley PetscInt *findices, *cindices; 3082bd041c0cSMatthew G. Knepley PetscInt numFIndices, numCIndices; 3083bd041c0cSMatthew G. Knepley 30849566063dSJacob Faibussowitsch PetscCall(DMPlexGetClosureIndices(dmf, fsection, globalFSection, cell, PETSC_FALSE, &numFIndices, &findices, NULL, NULL)); 30859566063dSJacob Faibussowitsch PetscCall(DMPlexComputeCellGeometryFEM(dmf, cell, NULL, v0, J, invJ, &detJ)); 3086bd041c0cSMatthew G. Knepley /* Get points from the quadrature */ 30879566063dSJacob Faibussowitsch PetscCall(VecCreateSeq(PETSC_COMM_SELF, Nq * dim, &pointVec)); 30889566063dSJacob Faibussowitsch PetscCall(VecSetBlockSize(pointVec, dim)); 30899566063dSJacob Faibussowitsch PetscCall(VecGetArray(pointVec, &pV)); 3090bd041c0cSMatthew G. Knepley for (q = 0; q < Nq; ++q) { 3091c330f8ffSToby Isaac const PetscReal xi0[3] = {-1., -1., -1.}; 3092c330f8ffSToby Isaac 3093bd041c0cSMatthew G. Knepley /* Transform point to real space */ 3094c330f8ffSToby Isaac CoordinatesRefToReal(dim, dim, xi0, v0, J, &qpoints[q * dim], x); 3095bd041c0cSMatthew G. Knepley for (d = 0; d < dim; ++d) pV[q * dim + d] = x[d]; 3096bd041c0cSMatthew G. Knepley } 30979566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(pointVec, &pV)); 3098bd041c0cSMatthew G. Knepley /* Get set of coarse cells that overlap points (would like to group points by coarse cell) */ 30999566063dSJacob Faibussowitsch PetscCall(DMLocatePoints(dmc, pointVec, DM_POINTLOCATION_NEAREST, &coarseCellSF)); 3100bd041c0cSMatthew G. Knepley /* Update matrix */ 31019566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(coarseCellSF, NULL, &numCoarseCells, NULL, &coarseCells)); 31025f80ce2aSJacob Faibussowitsch PetscCheck(numCoarseCells == Nq, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Not all closure points located"); 31039566063dSJacob Faibussowitsch PetscCall(VecGetArray(pointVec, &pV)); 3104bd041c0cSMatthew G. Knepley for (ccell = 0; ccell < numCoarseCells; ++ccell) { 3105bd041c0cSMatthew G. Knepley PetscReal pVReal[3]; 3106c330f8ffSToby Isaac const PetscReal xi0[3] = {-1., -1., -1.}; 3107c330f8ffSToby Isaac 31089566063dSJacob Faibussowitsch PetscCall(DMPlexGetClosureIndices(dmc, csection, globalCSection, coarseCells[ccell].index, PETSC_FALSE, &numCIndices, &cindices, NULL, NULL)); 3109bd041c0cSMatthew G. Knepley /* Transform points from real space to coarse reference space */ 31109566063dSJacob Faibussowitsch PetscCall(DMPlexComputeCellGeometryFEM(dmc, coarseCells[ccell].index, NULL, v0c, Jc, invJc, &detJc)); 3111bd041c0cSMatthew G. Knepley for (d = 0; d < dim; ++d) pVReal[d] = PetscRealPart(pV[ccell * dim + d]); 3112c330f8ffSToby Isaac CoordinatesRealToRef(dim, dim, xi0, v0c, invJc, pVReal, x); 3113bd041c0cSMatthew G. Knepley 3114bd041c0cSMatthew G. Knepley if (id == PETSCFE_CLASSID) { 3115bd041c0cSMatthew G. Knepley PetscFE fe = (PetscFE)obj; 3116bd041c0cSMatthew G. Knepley 3117bd041c0cSMatthew G. Knepley /* Evaluate coarse basis on contained point */ 31189566063dSJacob Faibussowitsch PetscCall(PetscFEGetDimension(fe, &cpdim)); 31199566063dSJacob Faibussowitsch PetscCall(PetscFEComputeTabulation(fe, 1, x, 0, T)); 3120bd041c0cSMatthew G. Knepley /* Get elemMat entries by multiplying by weight */ 3121bd041c0cSMatthew G. Knepley for (i = 0; i < numFIndices; ++i) { 31229566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(elemMat, cpdim)); 3123bd041c0cSMatthew G. Knepley for (j = 0; j < cpdim; ++j) { 3124ef0bb6c7SMatthew G. Knepley for (c = 0; c < Nc; ++c) elemMat[j] += T->T[0][j * Nc + c] * Tfine->T[0][(ccell * numFIndices + i) * Nc + c] * qweights[ccell * Nc + c] * detJ; 3125bd041c0cSMatthew G. Knepley } 3126bd041c0cSMatthew G. Knepley /* Update interpolator */ 31279566063dSJacob Faibussowitsch if (mesh->printFEM > 1) PetscCall(DMPrintCellMatrix(cell, name, 1, numCIndices, elemMat)); 312863a3b9bcSJacob Faibussowitsch PetscCheck(numCIndices == cpdim, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Number of element matrix columns %" PetscInt_FMT " != %" PetscInt_FMT, numCIndices, cpdim); 31299566063dSJacob Faibussowitsch PetscCall(MatSetValues(mass, 1, &findices[i], numCIndices, cindices, elemMat, ADD_VALUES)); 3130bd041c0cSMatthew G. Knepley } 3131bd041c0cSMatthew G. Knepley } else { 3132bd041c0cSMatthew G. Knepley cpdim = 1; 3133bd041c0cSMatthew G. Knepley for (i = 0; i < numFIndices; ++i) { 31349566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(elemMat, cpdim)); 3135bd041c0cSMatthew G. Knepley for (j = 0; j < cpdim; ++j) { 3136bd041c0cSMatthew G. Knepley for (c = 0; c < Nc; ++c) elemMat[j] += 1.0 * 1.0 * qweights[ccell * Nc + c] * detJ; 3137bd041c0cSMatthew G. Knepley } 3138bd041c0cSMatthew G. Knepley /* Update interpolator */ 31399566063dSJacob Faibussowitsch if (mesh->printFEM > 1) PetscCall(DMPrintCellMatrix(cell, name, 1, numCIndices, elemMat)); 314063a3b9bcSJacob Faibussowitsch PetscCall(PetscPrintf(PETSC_COMM_SELF, "Nq: %" PetscInt_FMT " %" PetscInt_FMT " Nf: %" PetscInt_FMT " %" PetscInt_FMT " Nc: %" PetscInt_FMT " %" PetscInt_FMT "\n", ccell, Nq, i, numFIndices, j, numCIndices)); 314163a3b9bcSJacob Faibussowitsch PetscCheck(numCIndices == cpdim, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Number of element matrix columns %" PetscInt_FMT " != %" PetscInt_FMT, numCIndices, cpdim); 31429566063dSJacob Faibussowitsch PetscCall(MatSetValues(mass, 1, &findices[i], numCIndices, cindices, elemMat, ADD_VALUES)); 3143bd041c0cSMatthew G. Knepley } 3144bd041c0cSMatthew G. Knepley } 31459566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreClosureIndices(dmc, csection, globalCSection, coarseCells[ccell].index, PETSC_FALSE, &numCIndices, &cindices, NULL, NULL)); 3146bd041c0cSMatthew G. Knepley } 31479566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(pointVec, &pV)); 31489566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&coarseCellSF)); 31499566063dSJacob Faibussowitsch PetscCall(VecDestroy(&pointVec)); 31509566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreClosureIndices(dmf, fsection, globalFSection, cell, PETSC_FALSE, &numFIndices, &findices, NULL, NULL)); 3151bd041c0cSMatthew G. Knepley } 31529566063dSJacob Faibussowitsch if (id == PETSCFE_CLASSID) PetscCall(PetscTabulationDestroy(&T)); 3153bd041c0cSMatthew G. Knepley } 31549566063dSJacob Faibussowitsch PetscCall(PetscFree3(v0, J, invJ)); 31559566063dSJacob Faibussowitsch PetscCall(PetscFree3(v0c, Jc, invJc)); 31569566063dSJacob Faibussowitsch PetscCall(PetscFree(elemMat)); 31579566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(mass, MAT_FINAL_ASSEMBLY)); 31589566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(mass, MAT_FINAL_ASSEMBLY)); 31593ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3160bd041c0cSMatthew G. Knepley } 3161bd041c0cSMatthew G. Knepley 3162bd041c0cSMatthew G. Knepley /*@ 316346fa42a0SMatthew G. Knepley DMPlexComputeInjectorFEM - Compute a mapping from coarse unknowns to fine unknowns 316446fa42a0SMatthew G. Knepley 316546fa42a0SMatthew G. Knepley Input Parameters: 316646fa42a0SMatthew G. Knepley + dmc - The coarse mesh 316760225df5SJacob Faibussowitsch . dmf - The fine mesh 316846fa42a0SMatthew G. Knepley - user - The user context 316946fa42a0SMatthew G. Knepley 317046fa42a0SMatthew G. Knepley Output Parameter: 317146fa42a0SMatthew G. Knepley . sc - The mapping 317246fa42a0SMatthew G. Knepley 317346fa42a0SMatthew G. Knepley Level: developer 317446fa42a0SMatthew G. Knepley 31751cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexComputeInterpolatorNested()`, `DMPlexComputeJacobianFEM()` 317646fa42a0SMatthew G. Knepley @*/ 3177d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeInjectorFEM(DM dmc, DM dmf, VecScatter *sc, void *user) 3178d71ae5a4SJacob Faibussowitsch { 3179e9d4ef1bSMatthew G. Knepley PetscDS prob; 31807c927364SMatthew G. Knepley PetscFE *feRef; 318197c42addSMatthew G. Knepley PetscFV *fvRef; 31827c927364SMatthew G. Knepley Vec fv, cv; 31837c927364SMatthew G. Knepley IS fis, cis; 31847c927364SMatthew G. Knepley PetscSection fsection, fglobalSection, csection, cglobalSection; 31857c927364SMatthew G. Knepley PetscInt *cmap, *cellCIndices, *cellFIndices, *cindices, *findices; 3186485ad865SMatthew G. Knepley PetscInt cTotDim, fTotDim = 0, Nf, f, field, cStart, cEnd, c, dim, d, startC, endC, offsetC, offsetF, m; 31876f3d3cbcSMatthew G. Knepley PetscBool *needAvg; 31887c927364SMatthew G. Knepley 31897c927364SMatthew G. Knepley PetscFunctionBegin; 31909566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DMPLEX_InjectorFEM, dmc, dmf, 0, 0)); 31919566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dmf, &dim)); 31929566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dmf, &fsection)); 31939566063dSJacob Faibussowitsch PetscCall(DMGetGlobalSection(dmf, &fglobalSection)); 31949566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dmc, &csection)); 31959566063dSJacob Faibussowitsch PetscCall(DMGetGlobalSection(dmc, &cglobalSection)); 31969566063dSJacob Faibussowitsch PetscCall(PetscSectionGetNumFields(fsection, &Nf)); 31979566063dSJacob Faibussowitsch PetscCall(DMPlexGetSimplexOrBoxCells(dmc, 0, &cStart, &cEnd)); 31989566063dSJacob Faibussowitsch PetscCall(DMGetDS(dmc, &prob)); 31999566063dSJacob Faibussowitsch PetscCall(PetscCalloc3(Nf, &feRef, Nf, &fvRef, Nf, &needAvg)); 32007c927364SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 320197c42addSMatthew G. Knepley PetscObject obj; 320297c42addSMatthew G. Knepley PetscClassId id; 3203aa7890ccSMatthew G. Knepley PetscInt fNb = 0, Nc = 0; 32047c927364SMatthew G. Knepley 32059566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(prob, f, &obj)); 32069566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 320797c42addSMatthew G. Knepley if (id == PETSCFE_CLASSID) { 320897c42addSMatthew G. Knepley PetscFE fe = (PetscFE)obj; 32096f3d3cbcSMatthew G. Knepley PetscSpace sp; 32109b2fc754SMatthew G. Knepley PetscInt maxDegree; 321197c42addSMatthew G. Knepley 32129566063dSJacob Faibussowitsch PetscCall(PetscFERefine(fe, &feRef[f])); 32139566063dSJacob Faibussowitsch PetscCall(PetscFEGetDimension(feRef[f], &fNb)); 32149566063dSJacob Faibussowitsch PetscCall(PetscFEGetNumComponents(fe, &Nc)); 32159566063dSJacob Faibussowitsch PetscCall(PetscFEGetBasisSpace(fe, &sp)); 32169566063dSJacob Faibussowitsch PetscCall(PetscSpaceGetDegree(sp, NULL, &maxDegree)); 32179b2fc754SMatthew G. Knepley if (!maxDegree) needAvg[f] = PETSC_TRUE; 321897c42addSMatthew G. Knepley } else if (id == PETSCFV_CLASSID) { 321997c42addSMatthew G. Knepley PetscFV fv = (PetscFV)obj; 322097c42addSMatthew G. Knepley PetscDualSpace Q; 322197c42addSMatthew G. Knepley 32229566063dSJacob Faibussowitsch PetscCall(PetscFVRefine(fv, &fvRef[f])); 32239566063dSJacob Faibussowitsch PetscCall(PetscFVGetDualSpace(fvRef[f], &Q)); 32249566063dSJacob Faibussowitsch PetscCall(PetscDualSpaceGetDimension(Q, &fNb)); 32259566063dSJacob Faibussowitsch PetscCall(PetscFVGetNumComponents(fv, &Nc)); 32266f3d3cbcSMatthew G. Knepley needAvg[f] = PETSC_TRUE; 322797c42addSMatthew G. Knepley } 3228d172c84bSMatthew G. Knepley fTotDim += fNb; 32297c927364SMatthew G. Knepley } 32309566063dSJacob Faibussowitsch PetscCall(PetscDSGetTotalDimension(prob, &cTotDim)); 32319566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(cTotDim, &cmap)); 32327c927364SMatthew G. Knepley for (field = 0, offsetC = 0, offsetF = 0; field < Nf; ++field) { 32337c927364SMatthew G. Knepley PetscFE feC; 323497c42addSMatthew G. Knepley PetscFV fvC; 32357c927364SMatthew G. Knepley PetscDualSpace QF, QC; 3236d172c84bSMatthew G. Knepley PetscInt order = -1, NcF, NcC, fpdim, cpdim; 32377c927364SMatthew G. Knepley 323897c42addSMatthew G. Knepley if (feRef[field]) { 32399566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(prob, field, (PetscObject *)&feC)); 32409566063dSJacob Faibussowitsch PetscCall(PetscFEGetNumComponents(feC, &NcC)); 32419566063dSJacob Faibussowitsch PetscCall(PetscFEGetNumComponents(feRef[field], &NcF)); 32429566063dSJacob Faibussowitsch PetscCall(PetscFEGetDualSpace(feRef[field], &QF)); 32439566063dSJacob Faibussowitsch PetscCall(PetscDualSpaceGetOrder(QF, &order)); 32449566063dSJacob Faibussowitsch PetscCall(PetscDualSpaceGetDimension(QF, &fpdim)); 32459566063dSJacob Faibussowitsch PetscCall(PetscFEGetDualSpace(feC, &QC)); 32469566063dSJacob Faibussowitsch PetscCall(PetscDualSpaceGetDimension(QC, &cpdim)); 324797c42addSMatthew G. Knepley } else { 32489566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(prob, field, (PetscObject *)&fvC)); 32499566063dSJacob Faibussowitsch PetscCall(PetscFVGetNumComponents(fvC, &NcC)); 32509566063dSJacob Faibussowitsch PetscCall(PetscFVGetNumComponents(fvRef[field], &NcF)); 32519566063dSJacob Faibussowitsch PetscCall(PetscFVGetDualSpace(fvRef[field], &QF)); 32529566063dSJacob Faibussowitsch PetscCall(PetscDualSpaceGetDimension(QF, &fpdim)); 32539566063dSJacob Faibussowitsch PetscCall(PetscFVGetDualSpace(fvC, &QC)); 32549566063dSJacob Faibussowitsch PetscCall(PetscDualSpaceGetDimension(QC, &cpdim)); 325597c42addSMatthew G. Knepley } 325663a3b9bcSJacob Faibussowitsch PetscCheck(NcF == NcC, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of components in fine space field %" PetscInt_FMT " does not match coarse field %" PetscInt_FMT, NcF, NcC); 32577c927364SMatthew G. Knepley for (c = 0; c < cpdim; ++c) { 32587c927364SMatthew G. Knepley PetscQuadrature cfunc; 3259d172c84bSMatthew G. Knepley const PetscReal *cqpoints, *cqweights; 3260d172c84bSMatthew G. Knepley PetscInt NqcC, NpC; 326197c42addSMatthew G. Knepley PetscBool found = PETSC_FALSE; 32627c927364SMatthew G. Knepley 32639566063dSJacob Faibussowitsch PetscCall(PetscDualSpaceGetFunctional(QC, c, &cfunc)); 32649566063dSJacob Faibussowitsch PetscCall(PetscQuadratureGetData(cfunc, NULL, &NqcC, &NpC, &cqpoints, &cqweights)); 326563a3b9bcSJacob Faibussowitsch PetscCheck(NqcC == NcC, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of quadrature components %" PetscInt_FMT " must match number of field components %" PetscInt_FMT, NqcC, NcC); 32661dca8a05SBarry Smith PetscCheck(NpC == 1 || !feRef[field], PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Do not know how to do injection for moments"); 32677c927364SMatthew G. Knepley for (f = 0; f < fpdim; ++f) { 32687c927364SMatthew G. Knepley PetscQuadrature ffunc; 3269d172c84bSMatthew G. Knepley const PetscReal *fqpoints, *fqweights; 32707c927364SMatthew G. Knepley PetscReal sum = 0.0; 3271d172c84bSMatthew G. Knepley PetscInt NqcF, NpF; 32727c927364SMatthew G. Knepley 32739566063dSJacob Faibussowitsch PetscCall(PetscDualSpaceGetFunctional(QF, f, &ffunc)); 32749566063dSJacob Faibussowitsch PetscCall(PetscQuadratureGetData(ffunc, NULL, &NqcF, &NpF, &fqpoints, &fqweights)); 327563a3b9bcSJacob Faibussowitsch PetscCheck(NqcF == NcF, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of quadrature components %" PetscInt_FMT " must match number of field components %" PetscInt_FMT, NqcF, NcF); 32767c927364SMatthew G. Knepley if (NpC != NpF) continue; 32777c927364SMatthew G. Knepley for (d = 0; d < dim; ++d) sum += PetscAbsReal(cqpoints[d] - fqpoints[d]); 32787c927364SMatthew G. Knepley if (sum > 1.0e-9) continue; 3279d172c84bSMatthew G. Knepley for (d = 0; d < NcC; ++d) sum += PetscAbsReal(cqweights[d] * fqweights[d]); 3280d172c84bSMatthew G. Knepley if (sum < 1.0e-9) continue; 3281d172c84bSMatthew G. Knepley cmap[offsetC + c] = offsetF + f; 328297c42addSMatthew G. Knepley found = PETSC_TRUE; 32837c927364SMatthew G. Knepley break; 32847c927364SMatthew G. Knepley } 328597c42addSMatthew G. Knepley if (!found) { 328697c42addSMatthew G. Knepley /* TODO We really want the average here, but some asshole put VecScatter in the interface */ 3287d172c84bSMatthew G. Knepley if (fvRef[field] || (feRef[field] && order == 0)) { 3288d172c84bSMatthew G. Knepley cmap[offsetC + c] = offsetF + 0; 328997c42addSMatthew G. Knepley } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Could not locate matching functional for injection"); 329097c42addSMatthew G. Knepley } 32917c927364SMatthew G. Knepley } 3292d172c84bSMatthew G. Knepley offsetC += cpdim; 3293d172c84bSMatthew G. Knepley offsetF += fpdim; 32947c927364SMatthew G. Knepley } 32959371c9d4SSatish Balay for (f = 0; f < Nf; ++f) { 32969371c9d4SSatish Balay PetscCall(PetscFEDestroy(&feRef[f])); 32979371c9d4SSatish Balay PetscCall(PetscFVDestroy(&fvRef[f])); 32989371c9d4SSatish Balay } 32999566063dSJacob Faibussowitsch PetscCall(PetscFree3(feRef, fvRef, needAvg)); 33007c927364SMatthew G. Knepley 33019566063dSJacob Faibussowitsch PetscCall(DMGetGlobalVector(dmf, &fv)); 33029566063dSJacob Faibussowitsch PetscCall(DMGetGlobalVector(dmc, &cv)); 33039566063dSJacob Faibussowitsch PetscCall(VecGetOwnershipRange(cv, &startC, &endC)); 33049566063dSJacob Faibussowitsch PetscCall(PetscSectionGetConstrainedStorageSize(cglobalSection, &m)); 33059566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(cTotDim, &cellCIndices, fTotDim, &cellFIndices)); 33069566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m, &cindices)); 33079566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m, &findices)); 33087c927364SMatthew G. Knepley for (d = 0; d < m; ++d) cindices[d] = findices[d] = -1; 33097c927364SMatthew G. Knepley for (c = cStart; c < cEnd; ++c) { 33109566063dSJacob Faibussowitsch PetscCall(DMPlexMatGetClosureIndicesRefined(dmf, fsection, fglobalSection, dmc, csection, cglobalSection, c, cellCIndices, cellFIndices)); 33117c927364SMatthew G. Knepley for (d = 0; d < cTotDim; ++d) { 33120bd915a7SMatthew G. Knepley if ((cellCIndices[d] < startC) || (cellCIndices[d] >= endC)) continue; 331363a3b9bcSJacob Faibussowitsch PetscCheck(!(findices[cellCIndices[d] - startC] >= 0) || !(findices[cellCIndices[d] - startC] != cellFIndices[cmap[d]]), PETSC_COMM_SELF, PETSC_ERR_PLIB, "Coarse dof %" PetscInt_FMT " maps to both %" PetscInt_FMT " and %" PetscInt_FMT, cindices[cellCIndices[d] - startC], findices[cellCIndices[d] - startC], cellFIndices[cmap[d]]); 33147c927364SMatthew G. Knepley cindices[cellCIndices[d] - startC] = cellCIndices[d]; 33157c927364SMatthew G. Knepley findices[cellCIndices[d] - startC] = cellFIndices[cmap[d]]; 33167c927364SMatthew G. Knepley } 33177c927364SMatthew G. Knepley } 33189566063dSJacob Faibussowitsch PetscCall(PetscFree(cmap)); 33199566063dSJacob Faibussowitsch PetscCall(PetscFree2(cellCIndices, cellFIndices)); 33207c927364SMatthew G. Knepley 33219566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, m, cindices, PETSC_OWN_POINTER, &cis)); 33229566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, m, findices, PETSC_OWN_POINTER, &fis)); 33239566063dSJacob Faibussowitsch PetscCall(VecScatterCreate(cv, cis, fv, fis, sc)); 33249566063dSJacob Faibussowitsch PetscCall(ISDestroy(&cis)); 33259566063dSJacob Faibussowitsch PetscCall(ISDestroy(&fis)); 33269566063dSJacob Faibussowitsch PetscCall(DMRestoreGlobalVector(dmf, &fv)); 33279566063dSJacob Faibussowitsch PetscCall(DMRestoreGlobalVector(dmc, &cv)); 33289566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DMPLEX_InjectorFEM, dmc, dmf, 0, 0)); 33293ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3330cb1e1211SMatthew G Knepley } 3331a1cf66bbSMatthew G. Knepley 33322f856554SMatthew G. Knepley /*@C 33332f856554SMatthew G. Knepley DMPlexGetCellFields - Retrieve the field values values for a chunk of cells 33342f856554SMatthew G. Knepley 33352f856554SMatthew G. Knepley Input Parameters: 3336a1cb98faSBarry Smith + dm - The `DM` 33372f856554SMatthew G. Knepley . cellIS - The cells to include 33382f856554SMatthew G. Knepley . locX - A local vector with the solution fields 33392f856554SMatthew G. Knepley . locX_t - A local vector with solution field time derivatives, or NULL 33402f856554SMatthew G. Knepley - locA - A local vector with auxiliary fields, or NULL 33412f856554SMatthew G. Knepley 33422f856554SMatthew G. Knepley Output Parameters: 33432f856554SMatthew G. Knepley + u - The field coefficients 33442f856554SMatthew G. Knepley . u_t - The fields derivative coefficients 33452f856554SMatthew G. Knepley - a - The auxiliary field coefficients 33462f856554SMatthew G. Knepley 33472f856554SMatthew G. Knepley Level: developer 33482f856554SMatthew G. Knepley 33491cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexGetFaceFields()` 33502f856554SMatthew G. Knepley @*/ 3351d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexGetCellFields(DM dm, IS cellIS, Vec locX, Vec locX_t, Vec locA, PetscScalar **u, PetscScalar **u_t, PetscScalar **a) 3352d71ae5a4SJacob Faibussowitsch { 33532f856554SMatthew G. Knepley DM plex, plexA = NULL; 3354a6e0b375SMatthew G. Knepley DMEnclosureType encAux; 33552f856554SMatthew G. Knepley PetscSection section, sectionAux; 33562f856554SMatthew G. Knepley PetscDS prob; 33572f856554SMatthew G. Knepley const PetscInt *cells; 33582f856554SMatthew G. Knepley PetscInt cStart, cEnd, numCells, totDim, totDimAux, c; 33592f856554SMatthew G. Knepley 33602f856554SMatthew G. Knepley PetscFunctionBegin; 33612f856554SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 3362064a246eSJacob Faibussowitsch PetscValidHeaderSpecific(locX, VEC_CLASSID, 3); 3363ad540459SPierre Jolivet if (locX_t) PetscValidHeaderSpecific(locX_t, VEC_CLASSID, 4); 3364ad540459SPierre Jolivet if (locA) PetscValidHeaderSpecific(locA, VEC_CLASSID, 5); 33654f572ea9SToby Isaac PetscAssertPointer(u, 6); 33664f572ea9SToby Isaac PetscAssertPointer(u_t, 7); 33674f572ea9SToby Isaac PetscAssertPointer(a, 8); 33689566063dSJacob Faibussowitsch PetscCall(DMPlexConvertPlex(dm, &plex, PETSC_FALSE)); 33699566063dSJacob Faibussowitsch PetscCall(ISGetPointRange(cellIS, &cStart, &cEnd, &cells)); 33709566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, §ion)); 337107218a29SMatthew G. Knepley PetscCall(DMGetCellDS(dm, cells ? cells[cStart] : cStart, &prob, NULL)); 33729566063dSJacob Faibussowitsch PetscCall(PetscDSGetTotalDimension(prob, &totDim)); 33732f856554SMatthew G. Knepley if (locA) { 33742f856554SMatthew G. Knepley DM dmAux; 33752f856554SMatthew G. Knepley PetscDS probAux; 33762f856554SMatthew G. Knepley 33779566063dSJacob Faibussowitsch PetscCall(VecGetDM(locA, &dmAux)); 33789566063dSJacob Faibussowitsch PetscCall(DMGetEnclosureRelation(dmAux, dm, &encAux)); 33799566063dSJacob Faibussowitsch PetscCall(DMPlexConvertPlex(dmAux, &plexA, PETSC_FALSE)); 33809566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dmAux, §ionAux)); 33819566063dSJacob Faibussowitsch PetscCall(DMGetDS(dmAux, &probAux)); 33829566063dSJacob Faibussowitsch PetscCall(PetscDSGetTotalDimension(probAux, &totDimAux)); 33832f856554SMatthew G. Knepley } 33842f856554SMatthew G. Knepley numCells = cEnd - cStart; 33859566063dSJacob Faibussowitsch PetscCall(DMGetWorkArray(dm, numCells * totDim, MPIU_SCALAR, u)); 33869371c9d4SSatish Balay if (locX_t) PetscCall(DMGetWorkArray(dm, numCells * totDim, MPIU_SCALAR, u_t)); 3387ad540459SPierre Jolivet else *u_t = NULL; 33889371c9d4SSatish Balay if (locA) PetscCall(DMGetWorkArray(dm, numCells * totDimAux, MPIU_SCALAR, a)); 3389ad540459SPierre Jolivet else *a = NULL; 33902f856554SMatthew G. Knepley for (c = cStart; c < cEnd; ++c) { 33912f856554SMatthew G. Knepley const PetscInt cell = cells ? cells[c] : c; 33922f856554SMatthew G. Knepley const PetscInt cind = c - cStart; 33932f856554SMatthew G. Knepley PetscScalar *x = NULL, *x_t = NULL, *ul = *u, *ul_t = *u_t, *al = *a; 33942f856554SMatthew G. Knepley PetscInt i; 33952f856554SMatthew G. Knepley 33969566063dSJacob Faibussowitsch PetscCall(DMPlexVecGetClosure(plex, section, locX, cell, NULL, &x)); 33972f856554SMatthew G. Knepley for (i = 0; i < totDim; ++i) ul[cind * totDim + i] = x[i]; 33989566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(plex, section, locX, cell, NULL, &x)); 33992f856554SMatthew G. Knepley if (locX_t) { 34009566063dSJacob Faibussowitsch PetscCall(DMPlexVecGetClosure(plex, section, locX_t, cell, NULL, &x_t)); 34012f856554SMatthew G. Knepley for (i = 0; i < totDim; ++i) ul_t[cind * totDim + i] = x_t[i]; 34029566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(plex, section, locX_t, cell, NULL, &x_t)); 34032f856554SMatthew G. Knepley } 34042f856554SMatthew G. Knepley if (locA) { 34052f856554SMatthew G. Knepley PetscInt subcell; 34069566063dSJacob Faibussowitsch PetscCall(DMGetEnclosurePoint(plexA, dm, encAux, cell, &subcell)); 34079566063dSJacob Faibussowitsch PetscCall(DMPlexVecGetClosure(plexA, sectionAux, locA, subcell, NULL, &x)); 34082f856554SMatthew G. Knepley for (i = 0; i < totDimAux; ++i) al[cind * totDimAux + i] = x[i]; 34099566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(plexA, sectionAux, locA, subcell, NULL, &x)); 34102f856554SMatthew G. Knepley } 34112f856554SMatthew G. Knepley } 34129566063dSJacob Faibussowitsch PetscCall(DMDestroy(&plex)); 34139566063dSJacob Faibussowitsch if (locA) PetscCall(DMDestroy(&plexA)); 34149566063dSJacob Faibussowitsch PetscCall(ISRestorePointRange(cellIS, &cStart, &cEnd, &cells)); 34153ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 34162f856554SMatthew G. Knepley } 34172f856554SMatthew G. Knepley 34182f856554SMatthew G. Knepley /*@C 34192f856554SMatthew G. Knepley DMPlexRestoreCellFields - Restore the field values values for a chunk of cells 34202f856554SMatthew G. Knepley 34212f856554SMatthew G. Knepley Input Parameters: 3422a1cb98faSBarry Smith + dm - The `DM` 34232f856554SMatthew G. Knepley . cellIS - The cells to include 34242f856554SMatthew G. Knepley . locX - A local vector with the solution fields 34252f856554SMatthew G. Knepley . locX_t - A local vector with solution field time derivatives, or NULL 34262f856554SMatthew G. Knepley - locA - A local vector with auxiliary fields, or NULL 34272f856554SMatthew G. Knepley 34282f856554SMatthew G. Knepley Output Parameters: 34292f856554SMatthew G. Knepley + u - The field coefficients 34302f856554SMatthew G. Knepley . u_t - The fields derivative coefficients 34312f856554SMatthew G. Knepley - a - The auxiliary field coefficients 34322f856554SMatthew G. Knepley 34332f856554SMatthew G. Knepley Level: developer 34342f856554SMatthew G. Knepley 34351cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexGetFaceFields()` 34362f856554SMatthew G. Knepley @*/ 3437d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexRestoreCellFields(DM dm, IS cellIS, Vec locX, Vec locX_t, Vec locA, PetscScalar **u, PetscScalar **u_t, PetscScalar **a) 3438d71ae5a4SJacob Faibussowitsch { 34392f856554SMatthew G. Knepley PetscFunctionBegin; 34409566063dSJacob Faibussowitsch PetscCall(DMRestoreWorkArray(dm, 0, MPIU_SCALAR, u)); 34419566063dSJacob Faibussowitsch if (locX_t) PetscCall(DMRestoreWorkArray(dm, 0, MPIU_SCALAR, u_t)); 34429566063dSJacob Faibussowitsch if (locA) PetscCall(DMRestoreWorkArray(dm, 0, MPIU_SCALAR, a)); 34433ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 34442f856554SMatthew G. Knepley } 34452f856554SMatthew G. Knepley 3446*a4e35b19SJacob Faibussowitsch static PetscErrorCode DMPlexGetHybridCellFields(DM dm, IS cellIS, Vec locX, Vec locX_t, Vec locA, PetscScalar **u, PetscScalar **u_t, PetscScalar **a) 3447d71ae5a4SJacob Faibussowitsch { 344807218a29SMatthew G. Knepley DM plex, plexA = NULL; 344907218a29SMatthew G. Knepley DMEnclosureType encAux; 345007218a29SMatthew G. Knepley PetscSection section, sectionAux; 345107218a29SMatthew G. Knepley PetscDS ds, dsIn; 34526528b96dSMatthew G. Knepley const PetscInt *cells; 345307218a29SMatthew G. Knepley PetscInt cStart, cEnd, numCells, c, totDim, totDimAux, Nf, f; 34546528b96dSMatthew G. Knepley 34556528b96dSMatthew G. Knepley PetscFunctionBegin; 345607218a29SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 345707218a29SMatthew G. Knepley PetscValidHeaderSpecific(cellIS, IS_CLASSID, 2); 345807218a29SMatthew G. Knepley PetscValidHeaderSpecific(locX, VEC_CLASSID, 3); 345907218a29SMatthew G. Knepley if (locX_t) { PetscValidHeaderSpecific(locX_t, VEC_CLASSID, 4); } 346007218a29SMatthew G. Knepley if (locA) { PetscValidHeaderSpecific(locA, VEC_CLASSID, 5); } 34614f572ea9SToby Isaac PetscAssertPointer(u, 6); 34624f572ea9SToby Isaac PetscAssertPointer(u_t, 7); 34634f572ea9SToby Isaac PetscAssertPointer(a, 8); 346407218a29SMatthew G. Knepley PetscCall(ISGetPointRange(cellIS, &cStart, &cEnd, &cells)); 346507218a29SMatthew G. Knepley numCells = cEnd - cStart; 346607218a29SMatthew G. Knepley PetscCall(DMPlexConvertPlex(dm, &plex, PETSC_FALSE)); 346707218a29SMatthew G. Knepley PetscCall(DMGetLocalSection(dm, §ion)); 346807218a29SMatthew G. Knepley PetscCall(DMGetCellDS(dm, cells ? cells[cStart] : cStart, &ds, &dsIn)); 346907218a29SMatthew G. Knepley PetscCall(PetscDSGetNumFields(dsIn, &Nf)); 347007218a29SMatthew G. Knepley PetscCall(PetscDSGetTotalDimension(dsIn, &totDim)); 347107218a29SMatthew G. Knepley if (locA) { 347207218a29SMatthew G. Knepley DM dmAux; 347307218a29SMatthew G. Knepley PetscDS probAux; 347407218a29SMatthew G. Knepley 347507218a29SMatthew G. Knepley PetscCall(VecGetDM(locA, &dmAux)); 347607218a29SMatthew G. Knepley PetscCall(DMGetEnclosureRelation(dmAux, dm, &encAux)); 347707218a29SMatthew G. Knepley PetscCall(DMPlexConvertPlex(dmAux, &plexA, PETSC_FALSE)); 347807218a29SMatthew G. Knepley PetscCall(DMGetLocalSection(dmAux, §ionAux)); 347907218a29SMatthew G. Knepley PetscCall(DMGetDS(dmAux, &probAux)); 348007218a29SMatthew G. Knepley PetscCall(PetscDSGetTotalDimension(probAux, &totDimAux)); 348107218a29SMatthew G. Knepley } 348207218a29SMatthew G. Knepley PetscCall(DMGetWorkArray(dm, numCells * totDim, MPIU_SCALAR, u)); 348307218a29SMatthew G. Knepley if (locX_t) PetscCall(DMGetWorkArray(dm, numCells * totDim, MPIU_SCALAR, u_t)); 348407218a29SMatthew G. Knepley else { 348507218a29SMatthew G. Knepley *u_t = NULL; 348607218a29SMatthew G. Knepley } 348707218a29SMatthew G. Knepley if (locA) PetscCall(DMGetWorkArray(dm, numCells * totDimAux, MPIU_SCALAR, a)); 348807218a29SMatthew G. Knepley else { 348907218a29SMatthew G. Knepley *a = NULL; 349007218a29SMatthew G. Knepley } 349107218a29SMatthew G. Knepley // Loop over cohesive cells 349207218a29SMatthew G. Knepley for (c = cStart; c < cEnd; ++c) { 349307218a29SMatthew G. Knepley const PetscInt cell = cells ? cells[c] : c; 349407218a29SMatthew G. Knepley const PetscInt cind = c - cStart; 349574a0c561SMatthew G. Knepley PetscScalar *xf = NULL, *xc = NULL, *x = NULL, *xf_t = NULL, *xc_t = NULL; 349674a0c561SMatthew G. Knepley PetscScalar *ul = &(*u)[cind * totDim], *ul_t = u_t ? &(*u_t)[cind * totDim] : NULL; 349707218a29SMatthew G. Knepley const PetscInt *cone, *ornt; 349807218a29SMatthew G. Knepley PetscInt Nx = 0, Nxf, s; 349907218a29SMatthew G. Knepley 350007218a29SMatthew G. Knepley PetscCall(DMPlexGetCone(dm, cell, &cone)); 350107218a29SMatthew G. Knepley PetscCall(DMPlexGetConeOrientation(dm, cell, &ornt)); 350207218a29SMatthew G. Knepley // Put in cohesive unknowns 350307218a29SMatthew G. Knepley PetscCall(DMPlexVecGetClosure(plex, section, locX, cell, &Nxf, &xf)); 350474a0c561SMatthew G. Knepley if (locX_t) PetscCall(DMPlexVecGetClosure(plex, section, locX_t, cell, NULL, &xf_t)); 350507218a29SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 350607218a29SMatthew G. Knepley PetscInt fdofIn, foff, foffIn; 350707218a29SMatthew G. Knepley PetscBool cohesive; 350807218a29SMatthew G. Knepley 350907218a29SMatthew G. Knepley PetscCall(PetscDSGetCohesive(dsIn, f, &cohesive)); 351007218a29SMatthew G. Knepley if (!cohesive) continue; 351107218a29SMatthew G. Knepley PetscCall(PetscDSGetFieldSize(dsIn, f, &fdofIn)); 351207218a29SMatthew G. Knepley PetscCall(PetscDSGetFieldOffsetCohesive(ds, f, &foff)); 351307218a29SMatthew G. Knepley PetscCall(PetscDSGetFieldOffsetCohesive(dsIn, f, &foffIn)); 351407218a29SMatthew G. Knepley for (PetscInt i = 0; i < fdofIn; ++i) ul[foffIn + i] = xf[foff + i]; 351574a0c561SMatthew G. Knepley if (locX_t) 351674a0c561SMatthew G. Knepley for (PetscInt i = 0; i < fdofIn; ++i) ul_t[foffIn + i] = xf_t[foff + i]; 351707218a29SMatthew G. Knepley Nx += fdofIn; 351807218a29SMatthew G. Knepley } 351907218a29SMatthew G. Knepley PetscCall(DMPlexVecRestoreClosure(plex, section, locX, cell, &Nxf, &xf)); 352074a0c561SMatthew G. Knepley if (locX_t) PetscCall(DMPlexVecRestoreClosure(plex, section, locX_t, cell, NULL, &xf_t)); 352107218a29SMatthew G. Knepley // Loop over sides of surface 352207218a29SMatthew G. Knepley for (s = 0; s < 2; ++s) { 352307218a29SMatthew G. Knepley const PetscInt *support; 352407218a29SMatthew G. Knepley const PetscInt face = cone[s]; 352507218a29SMatthew G. Knepley PetscInt ssize, ncell, Nxc; 352607218a29SMatthew G. Knepley 352707218a29SMatthew G. Knepley // I don't think I need the face to have 0 orientation in the hybrid cell 352807218a29SMatthew G. Knepley //PetscCheck(!ornt[s], PETSC_COMM_SELF, PETSC_ERR_SUP, "Face %" PetscInt_FMT " in hybrid cell %" PetscInt_FMT " has orientation %" PetscInt_FMT " != 0", face, cell, ornt[s]); 352907218a29SMatthew G. Knepley PetscCall(DMPlexGetSupport(dm, face, &support)); 353007218a29SMatthew G. Knepley PetscCall(DMPlexGetSupportSize(dm, face, &ssize)); 353107218a29SMatthew G. Knepley if (support[0] == cell) ncell = support[1]; 353207218a29SMatthew G. Knepley else if (support[1] == cell) ncell = support[0]; 353307218a29SMatthew G. Knepley else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Face %" PetscInt_FMT " does not have cell %" PetscInt_FMT " in its support", face, cell); 353407218a29SMatthew G. Knepley // Get closure of both face and cell, stick in cell for normal fields and face for cohesive fields 353507218a29SMatthew G. Knepley PetscCall(DMPlexVecGetClosure(plex, section, locX, ncell, &Nxc, &xc)); 353674a0c561SMatthew G. Knepley if (locX_t) PetscCall(DMPlexVecGetClosure(plex, section, locX_t, ncell, NULL, &xc_t)); 353707218a29SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 353807218a29SMatthew G. Knepley PetscInt fdofIn, foffIn; 353907218a29SMatthew G. Knepley PetscBool cohesive; 354007218a29SMatthew G. Knepley 354107218a29SMatthew G. Knepley PetscCall(PetscDSGetCohesive(dsIn, f, &cohesive)); 354207218a29SMatthew G. Knepley if (cohesive) continue; 354307218a29SMatthew G. Knepley PetscCall(PetscDSGetFieldSize(dsIn, f, &fdofIn)); 354407218a29SMatthew G. Knepley PetscCall(PetscDSGetFieldOffsetCohesive(dsIn, f, &foffIn)); 354507218a29SMatthew G. Knepley for (PetscInt i = 0; i < fdofIn; ++i) ul[foffIn + s * fdofIn + i] = xc[foffIn + i]; 354674a0c561SMatthew G. Knepley if (locX_t) 354774a0c561SMatthew G. Knepley for (PetscInt i = 0; i < fdofIn; ++i) ul_t[foffIn + s * fdofIn + i] = xc_t[foffIn + i]; 354807218a29SMatthew G. Knepley Nx += fdofIn; 354907218a29SMatthew G. Knepley } 355007218a29SMatthew G. Knepley PetscCall(DMPlexVecRestoreClosure(plex, section, locX, ncell, &Nxc, &xc)); 355174a0c561SMatthew G. Knepley if (locX_t) PetscCall(DMPlexVecRestoreClosure(plex, section, locX_t, ncell, NULL, &xc_t)); 355207218a29SMatthew G. Knepley } 355307218a29SMatthew G. Knepley PetscCheck(Nx == totDim, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "Closure size %" PetscInt_FMT " for cell %" PetscInt_FMT " does not match DS size %" PetscInt_FMT, Nx, cell, totDim); 355407218a29SMatthew G. Knepley 355507218a29SMatthew G. Knepley if (locA) { 355607218a29SMatthew G. Knepley PetscScalar *al = &(*a)[cind * totDimAux]; 355707218a29SMatthew G. Knepley PetscInt subcell; 355807218a29SMatthew G. Knepley 355907218a29SMatthew G. Knepley PetscCall(DMGetEnclosurePoint(plexA, dm, encAux, cell, &subcell)); 356007218a29SMatthew G. Knepley PetscCall(DMPlexVecGetClosure(plexA, sectionAux, locA, subcell, &Nx, &x)); 356107218a29SMatthew G. Knepley PetscCheck(Nx == totDimAux, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "Closure size %" PetscInt_FMT " for subcell %" PetscInt_FMT "does not match DS size %" PetscInt_FMT, Nx, subcell, totDimAux); 356207218a29SMatthew G. Knepley for (PetscInt i = 0; i < totDimAux; ++i) al[i] = x[i]; 356307218a29SMatthew G. Knepley PetscCall(DMPlexVecRestoreClosure(plexA, sectionAux, locA, subcell, &Nx, &x)); 356407218a29SMatthew G. Knepley } 356507218a29SMatthew G. Knepley } 356607218a29SMatthew G. Knepley PetscCall(DMDestroy(&plex)); 356707218a29SMatthew G. Knepley PetscCall(DMDestroy(&plexA)); 356807218a29SMatthew G. Knepley PetscCall(ISRestorePointRange(cellIS, &cStart, &cEnd, &cells)); 356907218a29SMatthew G. Knepley PetscFunctionReturn(PETSC_SUCCESS); 357007218a29SMatthew G. Knepley } 357107218a29SMatthew G. Knepley 357207218a29SMatthew G. Knepley /* 35733e2b0218SMatthew G. Knepley DMPlexGetHybridFields - Get the field values for the negative side (s = 0) and positive side (s = 1) of the interface 357407218a29SMatthew G. Knepley 357507218a29SMatthew G. Knepley Input Parameters: 357607218a29SMatthew G. Knepley + dm - The full domain DM 357707218a29SMatthew G. Knepley . dmX - An array of DM for the field, say an auxiliary DM, indexed by s 357807218a29SMatthew G. Knepley . dsX - An array of PetscDS for the field, indexed by s 357907218a29SMatthew G. Knepley . cellIS - The interface cells for which we want values 358007218a29SMatthew G. Knepley . locX - An array of local vectors with the field values, indexed by s 358107218a29SMatthew G. Knepley - useCell - Flag to have values come from neighboring cell rather than endcap face 358207218a29SMatthew G. Knepley 358307218a29SMatthew G. Knepley Output Parameter: 358407218a29SMatthew G. Knepley . x - An array of field values, indexed by s 358507218a29SMatthew G. Knepley 358607218a29SMatthew G. Knepley Note: 358776fbde31SPierre Jolivet The arrays in `x` will be allocated using `DMGetWorkArray()`, and must be returned using `DMPlexRestoreHybridFields()`. 358807218a29SMatthew G. Knepley 358907218a29SMatthew G. Knepley Level: advanced 359007218a29SMatthew G. Knepley 359176fbde31SPierre Jolivet .seealso: `DMPlexRestoreHybridFields()`, `DMGetWorkArray()` 359207218a29SMatthew G. Knepley */ 359307218a29SMatthew G. Knepley static PetscErrorCode DMPlexGetHybridFields(DM dm, DM dmX[], PetscDS dsX[], IS cellIS, Vec locX[], PetscBool useCell, PetscScalar *x[]) 359407218a29SMatthew G. Knepley { 359507218a29SMatthew G. Knepley DM plexX[2]; 359607218a29SMatthew G. Knepley DMEnclosureType encX[2]; 359707218a29SMatthew G. Knepley PetscSection sectionX[2]; 359807218a29SMatthew G. Knepley const PetscInt *cells; 359907218a29SMatthew G. Knepley PetscInt cStart, cEnd, numCells, c, s, totDimX[2]; 360007218a29SMatthew G. Knepley 360107218a29SMatthew G. Knepley PetscFunctionBegin; 36024f572ea9SToby Isaac PetscAssertPointer(locX, 5); 360307218a29SMatthew G. Knepley if (!locX[0] || !locX[1]) PetscFunctionReturn(PETSC_SUCCESS); 36044f572ea9SToby Isaac PetscAssertPointer(dmX, 2); 36054f572ea9SToby Isaac PetscAssertPointer(dsX, 3); 360607218a29SMatthew G. Knepley PetscValidHeaderSpecific(cellIS, IS_CLASSID, 4); 36074f572ea9SToby Isaac PetscAssertPointer(x, 7); 36089566063dSJacob Faibussowitsch PetscCall(ISGetPointRange(cellIS, &cStart, &cEnd, &cells)); 36096528b96dSMatthew G. Knepley numCells = cEnd - cStart; 3610148442b3SMatthew G. Knepley for (s = 0; s < 2; ++s) { 361107218a29SMatthew G. Knepley PetscValidHeaderSpecific(dmX[s], DM_CLASSID, 2); 361207218a29SMatthew G. Knepley PetscValidHeaderSpecific(dsX[s], PETSCDS_CLASSID, 3); 361307218a29SMatthew G. Knepley PetscValidHeaderSpecific(locX[s], VEC_CLASSID, 5); 361407218a29SMatthew G. Knepley PetscCall(DMPlexConvertPlex(dmX[s], &plexX[s], PETSC_FALSE)); 361507218a29SMatthew G. Knepley PetscCall(DMGetEnclosureRelation(dmX[s], dm, &encX[s])); 361607218a29SMatthew G. Knepley PetscCall(DMGetLocalSection(dmX[s], §ionX[s])); 361707218a29SMatthew G. Knepley PetscCall(PetscDSGetTotalDimension(dsX[s], &totDimX[s])); 361807218a29SMatthew G. Knepley PetscCall(DMGetWorkArray(dmX[s], numCells * totDimX[s], MPIU_SCALAR, &x[s])); 361904c51a94SMatthew G. Knepley } 3620148442b3SMatthew G. Knepley for (c = cStart; c < cEnd; ++c) { 36216528b96dSMatthew G. Knepley const PetscInt cell = cells ? cells[c] : c; 36226528b96dSMatthew G. Knepley const PetscInt cind = c - cStart; 36236528b96dSMatthew G. Knepley const PetscInt *cone, *ornt; 36246528b96dSMatthew G. Knepley 36259566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, cell, &cone)); 36269566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeOrientation(dm, cell, &ornt)); 362707218a29SMatthew G. Knepley //PetscCheck(!ornt[0], PETSC_COMM_SELF, PETSC_ERR_SUP, "Face %" PetscInt_FMT " in hybrid cell %" PetscInt_FMT " has orientation %" PetscInt_FMT " != 0", cone[0], cell, ornt[0]); 3628148442b3SMatthew G. Knepley for (s = 0; s < 2; ++s) { 362907218a29SMatthew G. Knepley const PetscInt tdX = totDimX[s]; 363007218a29SMatthew G. Knepley PetscScalar *closure = NULL, *xl = &x[s][cind * tdX]; 363107218a29SMatthew G. Knepley PetscInt face = cone[s], point = face, subpoint, Nx, i; 363207218a29SMatthew G. Knepley 363307218a29SMatthew G. Knepley if (useCell) { 36345fedec97SMatthew G. Knepley const PetscInt *support; 363507218a29SMatthew G. Knepley PetscInt ssize; 36366528b96dSMatthew G. Knepley 363707218a29SMatthew G. Knepley PetscCall(DMPlexGetSupport(dm, face, &support)); 363807218a29SMatthew G. Knepley PetscCall(DMPlexGetSupportSize(dm, face, &ssize)); 363907218a29SMatthew G. Knepley PetscCheck(ssize == 2, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Face %" PetscInt_FMT " from cell %" PetscInt_FMT " has support size %" PetscInt_FMT " != 2", face, cell, ssize); 364007218a29SMatthew G. Knepley if (support[0] == cell) point = support[1]; 364107218a29SMatthew G. Knepley else if (support[1] == cell) point = support[0]; 364207218a29SMatthew G. Knepley else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Face %" PetscInt_FMT " does not have cell %" PetscInt_FMT " in its support", face, cell); 364307218a29SMatthew G. Knepley } 364407218a29SMatthew G. Knepley PetscCall(DMGetEnclosurePoint(plexX[s], dm, encX[s], point, &subpoint)); 364507218a29SMatthew G. Knepley PetscCall(DMPlexVecGetOrientedClosure_Internal(plexX[s], sectionX[s], locX[s], subpoint, ornt[s], &Nx, &closure)); 364607218a29SMatthew G. Knepley PetscCheck(Nx == tdX, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "Closure size %" PetscInt_FMT " for subpoint %" PetscInt_FMT " does not match DS size %" PetscInt_FMT, Nx, subpoint, tdX); 364707218a29SMatthew G. Knepley for (i = 0; i < Nx; ++i) xl[i] = closure[i]; 364807218a29SMatthew G. Knepley PetscCall(DMPlexVecRestoreClosure(plexX[s], sectionX[s], locX[s], subpoint, &Nx, &closure)); 36496528b96dSMatthew G. Knepley } 36506528b96dSMatthew G. Knepley } 365107218a29SMatthew G. Knepley for (s = 0; s < 2; ++s) PetscCall(DMDestroy(&plexX[s])); 36529566063dSJacob Faibussowitsch PetscCall(ISRestorePointRange(cellIS, &cStart, &cEnd, &cells)); 36533ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 36546528b96dSMatthew G. Knepley } 36556528b96dSMatthew G. Knepley 365607218a29SMatthew G. Knepley static PetscErrorCode DMPlexRestoreHybridFields(DM dm, DM dmX[], PetscDS dsX[], IS cellIS, Vec locX[], PetscBool useCell, PetscScalar *x[]) 3657d71ae5a4SJacob Faibussowitsch { 36586528b96dSMatthew G. Knepley PetscFunctionBegin; 365907218a29SMatthew G. Knepley if (!locX[0] || !locX[1]) PetscFunctionReturn(PETSC_SUCCESS); 366007218a29SMatthew G. Knepley PetscCall(DMRestoreWorkArray(dmX[0], 0, MPIU_SCALAR, &x[0])); 366107218a29SMatthew G. Knepley PetscCall(DMRestoreWorkArray(dmX[1], 0, MPIU_SCALAR, &x[1])); 36623ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 36636528b96dSMatthew G. Knepley } 36646528b96dSMatthew G. Knepley 36652f856554SMatthew G. Knepley /*@C 36662f856554SMatthew G. Knepley DMPlexGetFaceFields - Retrieve the field values values for a chunk of faces 36672f856554SMatthew G. Knepley 36682f856554SMatthew G. Knepley Input Parameters: 3669a1cb98faSBarry Smith + dm - The `DM` 36702f856554SMatthew G. Knepley . fStart - The first face to include 36712f856554SMatthew G. Knepley . fEnd - The first face to exclude 36722f856554SMatthew G. Knepley . locX - A local vector with the solution fields 36732f856554SMatthew G. Knepley . locX_t - A local vector with solution field time derivatives, or NULL 36742f856554SMatthew G. Knepley . faceGeometry - A local vector with face geometry 36752f856554SMatthew G. Knepley . cellGeometry - A local vector with cell geometry 367660225df5SJacob Faibussowitsch - locGrad - A local vector with field gradients, or NULL 36772f856554SMatthew G. Knepley 36782f856554SMatthew G. Knepley Output Parameters: 36792f856554SMatthew G. Knepley + Nface - The number of faces with field values 36802f856554SMatthew G. Knepley . uL - The field values at the left side of the face 36812f856554SMatthew G. Knepley - uR - The field values at the right side of the face 36822f856554SMatthew G. Knepley 36832f856554SMatthew G. Knepley Level: developer 36842f856554SMatthew G. Knepley 36851cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexGetCellFields()` 36862f856554SMatthew G. Knepley @*/ 3687d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexGetFaceFields(DM dm, PetscInt fStart, PetscInt fEnd, Vec locX, Vec locX_t, Vec faceGeometry, Vec cellGeometry, Vec locGrad, PetscInt *Nface, PetscScalar **uL, PetscScalar **uR) 3688d71ae5a4SJacob Faibussowitsch { 36892f856554SMatthew G. Knepley DM dmFace, dmCell, dmGrad = NULL; 36902f856554SMatthew G. Knepley PetscSection section; 36912f856554SMatthew G. Knepley PetscDS prob; 36922f856554SMatthew G. Knepley DMLabel ghostLabel; 36932f856554SMatthew G. Knepley const PetscScalar *facegeom, *cellgeom, *x, *lgrad; 36942f856554SMatthew G. Knepley PetscBool *isFE; 36952f856554SMatthew G. Knepley PetscInt dim, Nf, f, Nc, numFaces = fEnd - fStart, iface, face; 36962f856554SMatthew G. Knepley 36972f856554SMatthew G. Knepley PetscFunctionBegin; 36982f856554SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 36992f856554SMatthew G. Knepley PetscValidHeaderSpecific(locX, VEC_CLASSID, 4); 3700ad540459SPierre Jolivet if (locX_t) PetscValidHeaderSpecific(locX_t, VEC_CLASSID, 5); 37012f856554SMatthew G. Knepley PetscValidHeaderSpecific(faceGeometry, VEC_CLASSID, 6); 37022f856554SMatthew G. Knepley PetscValidHeaderSpecific(cellGeometry, VEC_CLASSID, 7); 3703ad540459SPierre Jolivet if (locGrad) PetscValidHeaderSpecific(locGrad, VEC_CLASSID, 8); 37044f572ea9SToby Isaac PetscAssertPointer(uL, 10); 37054f572ea9SToby Isaac PetscAssertPointer(uR, 11); 37069566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 37079566063dSJacob Faibussowitsch PetscCall(DMGetDS(dm, &prob)); 37089566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, §ion)); 37099566063dSJacob Faibussowitsch PetscCall(PetscDSGetNumFields(prob, &Nf)); 37109566063dSJacob Faibussowitsch PetscCall(PetscDSGetTotalComponents(prob, &Nc)); 37119566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(Nf, &isFE)); 37122f856554SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 37132f856554SMatthew G. Knepley PetscObject obj; 37142f856554SMatthew G. Knepley PetscClassId id; 37152f856554SMatthew G. Knepley 37169566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(prob, f, &obj)); 37179566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 37189371c9d4SSatish Balay if (id == PETSCFE_CLASSID) { 37199371c9d4SSatish Balay isFE[f] = PETSC_TRUE; 37209371c9d4SSatish Balay } else if (id == PETSCFV_CLASSID) { 37219371c9d4SSatish Balay isFE[f] = PETSC_FALSE; 37229371c9d4SSatish Balay } else { 37239371c9d4SSatish Balay isFE[f] = PETSC_FALSE; 37249371c9d4SSatish Balay } 37252f856554SMatthew G. Knepley } 37269566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, "ghost", &ghostLabel)); 37279566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(locX, &x)); 37289566063dSJacob Faibussowitsch PetscCall(VecGetDM(faceGeometry, &dmFace)); 37299566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(faceGeometry, &facegeom)); 37309566063dSJacob Faibussowitsch PetscCall(VecGetDM(cellGeometry, &dmCell)); 37319566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(cellGeometry, &cellgeom)); 37322f856554SMatthew G. Knepley if (locGrad) { 37339566063dSJacob Faibussowitsch PetscCall(VecGetDM(locGrad, &dmGrad)); 37349566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(locGrad, &lgrad)); 37352f856554SMatthew G. Knepley } 37369566063dSJacob Faibussowitsch PetscCall(DMGetWorkArray(dm, numFaces * Nc, MPIU_SCALAR, uL)); 37379566063dSJacob Faibussowitsch PetscCall(DMGetWorkArray(dm, numFaces * Nc, MPIU_SCALAR, uR)); 37382f856554SMatthew G. Knepley /* Right now just eat the extra work for FE (could make a cell loop) */ 37392f856554SMatthew G. Knepley for (face = fStart, iface = 0; face < fEnd; ++face) { 37402f856554SMatthew G. Knepley const PetscInt *cells; 37412f856554SMatthew G. Knepley PetscFVFaceGeom *fg; 37422f856554SMatthew G. Knepley PetscFVCellGeom *cgL, *cgR; 37432f856554SMatthew G. Knepley PetscScalar *xL, *xR, *gL, *gR; 37442f856554SMatthew G. Knepley PetscScalar *uLl = *uL, *uRl = *uR; 37452f856554SMatthew G. Knepley PetscInt ghost, nsupp, nchild; 37462f856554SMatthew G. Knepley 37479566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(ghostLabel, face, &ghost)); 37489566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dm, face, &nsupp)); 37499566063dSJacob Faibussowitsch PetscCall(DMPlexGetTreeChildren(dm, face, &nchild, NULL)); 37502f856554SMatthew G. Knepley if (ghost >= 0 || nsupp > 2 || nchild > 0) continue; 37519566063dSJacob Faibussowitsch PetscCall(DMPlexPointLocalRead(dmFace, face, facegeom, &fg)); 37529566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(dm, face, &cells)); 37539566063dSJacob Faibussowitsch PetscCall(DMPlexPointLocalRead(dmCell, cells[0], cellgeom, &cgL)); 37549566063dSJacob Faibussowitsch PetscCall(DMPlexPointLocalRead(dmCell, cells[1], cellgeom, &cgR)); 37552f856554SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 37562f856554SMatthew G. Knepley PetscInt off; 37572f856554SMatthew G. Knepley 37589566063dSJacob Faibussowitsch PetscCall(PetscDSGetComponentOffset(prob, f, &off)); 37592f856554SMatthew G. Knepley if (isFE[f]) { 37602f856554SMatthew G. Knepley const PetscInt *cone; 37612f856554SMatthew G. Knepley PetscInt comp, coneSizeL, coneSizeR, faceLocL, faceLocR, ldof, rdof, d; 37622f856554SMatthew G. Knepley 37632f856554SMatthew G. Knepley xL = xR = NULL; 37649566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldComponents(section, f, &comp)); 37659566063dSJacob Faibussowitsch PetscCall(DMPlexVecGetClosure(dm, section, locX, cells[0], &ldof, (PetscScalar **)&xL)); 37669566063dSJacob Faibussowitsch PetscCall(DMPlexVecGetClosure(dm, section, locX, cells[1], &rdof, (PetscScalar **)&xR)); 37679566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, cells[0], &cone)); 37689566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, cells[0], &coneSizeL)); 37699371c9d4SSatish Balay for (faceLocL = 0; faceLocL < coneSizeL; ++faceLocL) 37709371c9d4SSatish Balay if (cone[faceLocL] == face) break; 37719566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, cells[1], &cone)); 37729566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, cells[1], &coneSizeR)); 37739371c9d4SSatish Balay for (faceLocR = 0; faceLocR < coneSizeR; ++faceLocR) 37749371c9d4SSatish Balay if (cone[faceLocR] == face) break; 37751dca8a05SBarry Smith PetscCheck(faceLocL != coneSizeL || faceLocR != coneSizeR, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Could not find face %" PetscInt_FMT " in cone of cell %" PetscInt_FMT " or cell %" PetscInt_FMT, face, cells[0], cells[1]); 37762f856554SMatthew G. Knepley /* Check that FEM field has values in the right cell (sometimes its an FV ghost cell) */ 37772f856554SMatthew G. Knepley /* TODO: this is a hack that might not be right for nonconforming */ 37782f856554SMatthew G. Knepley if (faceLocL < coneSizeL) { 37799566063dSJacob Faibussowitsch PetscCall(PetscFEEvaluateFaceFields_Internal(prob, f, faceLocL, xL, &uLl[iface * Nc + off])); 37809566063dSJacob Faibussowitsch if (rdof == ldof && faceLocR < coneSizeR) PetscCall(PetscFEEvaluateFaceFields_Internal(prob, f, faceLocR, xR, &uRl[iface * Nc + off])); 37812f856554SMatthew G. Knepley else { 37829371c9d4SSatish Balay for (d = 0; d < comp; ++d) uRl[iface * Nc + off + d] = uLl[iface * Nc + off + d]; 37839371c9d4SSatish Balay } 37849371c9d4SSatish Balay } else { 37859566063dSJacob Faibussowitsch PetscCall(PetscFEEvaluateFaceFields_Internal(prob, f, faceLocR, xR, &uRl[iface * Nc + off])); 37869566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldComponents(section, f, &comp)); 37872f856554SMatthew G. Knepley for (d = 0; d < comp; ++d) uLl[iface * Nc + off + d] = uRl[iface * Nc + off + d]; 37882f856554SMatthew G. Knepley } 37899566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(dm, section, locX, cells[0], &ldof, (PetscScalar **)&xL)); 37909566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(dm, section, locX, cells[1], &rdof, (PetscScalar **)&xR)); 37912f856554SMatthew G. Knepley } else { 37922f856554SMatthew G. Knepley PetscFV fv; 37932f856554SMatthew G. Knepley PetscInt numComp, c; 37942f856554SMatthew G. Knepley 37959566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(prob, f, (PetscObject *)&fv)); 37969566063dSJacob Faibussowitsch PetscCall(PetscFVGetNumComponents(fv, &numComp)); 37979566063dSJacob Faibussowitsch PetscCall(DMPlexPointLocalFieldRead(dm, cells[0], f, x, &xL)); 37989566063dSJacob Faibussowitsch PetscCall(DMPlexPointLocalFieldRead(dm, cells[1], f, x, &xR)); 37992f856554SMatthew G. Knepley if (dmGrad) { 38002f856554SMatthew G. Knepley PetscReal dxL[3], dxR[3]; 38012f856554SMatthew G. Knepley 38029566063dSJacob Faibussowitsch PetscCall(DMPlexPointLocalRead(dmGrad, cells[0], lgrad, &gL)); 38039566063dSJacob Faibussowitsch PetscCall(DMPlexPointLocalRead(dmGrad, cells[1], lgrad, &gR)); 38042f856554SMatthew G. Knepley DMPlex_WaxpyD_Internal(dim, -1, cgL->centroid, fg->centroid, dxL); 38052f856554SMatthew G. Knepley DMPlex_WaxpyD_Internal(dim, -1, cgR->centroid, fg->centroid, dxR); 38062f856554SMatthew G. Knepley for (c = 0; c < numComp; ++c) { 38072f856554SMatthew G. Knepley uLl[iface * Nc + off + c] = xL[c] + DMPlex_DotD_Internal(dim, &gL[c * dim], dxL); 38082f856554SMatthew G. Knepley uRl[iface * Nc + off + c] = xR[c] + DMPlex_DotD_Internal(dim, &gR[c * dim], dxR); 38092f856554SMatthew G. Knepley } 38102f856554SMatthew G. Knepley } else { 38112f856554SMatthew G. Knepley for (c = 0; c < numComp; ++c) { 38122f856554SMatthew G. Knepley uLl[iface * Nc + off + c] = xL[c]; 38132f856554SMatthew G. Knepley uRl[iface * Nc + off + c] = xR[c]; 38142f856554SMatthew G. Knepley } 38152f856554SMatthew G. Knepley } 38162f856554SMatthew G. Knepley } 38172f856554SMatthew G. Knepley } 38182f856554SMatthew G. Knepley ++iface; 38192f856554SMatthew G. Knepley } 38202f856554SMatthew G. Knepley *Nface = iface; 38219566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(locX, &x)); 38229566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(faceGeometry, &facegeom)); 38239566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(cellGeometry, &cellgeom)); 382448a46eb9SPierre Jolivet if (locGrad) PetscCall(VecRestoreArrayRead(locGrad, &lgrad)); 38259566063dSJacob Faibussowitsch PetscCall(PetscFree(isFE)); 38263ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 38272f856554SMatthew G. Knepley } 38282f856554SMatthew G. Knepley 38292f856554SMatthew G. Knepley /*@C 38302f856554SMatthew G. Knepley DMPlexRestoreFaceFields - Restore the field values values for a chunk of faces 38312f856554SMatthew G. Knepley 38322f856554SMatthew G. Knepley Input Parameters: 3833a1cb98faSBarry Smith + dm - The `DM` 38342f856554SMatthew G. Knepley . fStart - The first face to include 38352f856554SMatthew G. Knepley . fEnd - The first face to exclude 38362f856554SMatthew G. Knepley . locX - A local vector with the solution fields 38372f856554SMatthew G. Knepley . locX_t - A local vector with solution field time derivatives, or NULL 38382f856554SMatthew G. Knepley . faceGeometry - A local vector with face geometry 38392f856554SMatthew G. Knepley . cellGeometry - A local vector with cell geometry 384060225df5SJacob Faibussowitsch - locGrad - A local vector with field gradients, or NULL 38412f856554SMatthew G. Knepley 38422f856554SMatthew G. Knepley Output Parameters: 38432f856554SMatthew G. Knepley + Nface - The number of faces with field values 38442f856554SMatthew G. Knepley . uL - The field values at the left side of the face 38452f856554SMatthew G. Knepley - uR - The field values at the right side of the face 38462f856554SMatthew G. Knepley 38472f856554SMatthew G. Knepley Level: developer 38482f856554SMatthew G. Knepley 38491cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexGetFaceFields()` 38502f856554SMatthew G. Knepley @*/ 3851d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexRestoreFaceFields(DM dm, PetscInt fStart, PetscInt fEnd, Vec locX, Vec locX_t, Vec faceGeometry, Vec cellGeometry, Vec locGrad, PetscInt *Nface, PetscScalar **uL, PetscScalar **uR) 3852d71ae5a4SJacob Faibussowitsch { 38532f856554SMatthew G. Knepley PetscFunctionBegin; 38549566063dSJacob Faibussowitsch PetscCall(DMRestoreWorkArray(dm, 0, MPIU_SCALAR, uL)); 38559566063dSJacob Faibussowitsch PetscCall(DMRestoreWorkArray(dm, 0, MPIU_SCALAR, uR)); 38563ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 38572f856554SMatthew G. Knepley } 38582f856554SMatthew G. Knepley 38592f856554SMatthew G. Knepley /*@C 38602f856554SMatthew G. Knepley DMPlexGetFaceGeometry - Retrieve the geometric values for a chunk of faces 38612f856554SMatthew G. Knepley 38622f856554SMatthew G. Knepley Input Parameters: 3863a1cb98faSBarry Smith + dm - The `DM` 38642f856554SMatthew G. Knepley . fStart - The first face to include 38652f856554SMatthew G. Knepley . fEnd - The first face to exclude 38662f856554SMatthew G. Knepley . faceGeometry - A local vector with face geometry 38672f856554SMatthew G. Knepley - cellGeometry - A local vector with cell geometry 38682f856554SMatthew G. Knepley 38692f856554SMatthew G. Knepley Output Parameters: 38702f856554SMatthew G. Knepley + Nface - The number of faces with field values 38712f856554SMatthew G. Knepley . fgeom - The extract the face centroid and normal 38722f856554SMatthew G. Knepley - vol - The cell volume 38732f856554SMatthew G. Knepley 38742f856554SMatthew G. Knepley Level: developer 38752f856554SMatthew G. Knepley 38761cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexGetCellFields()` 38772f856554SMatthew G. Knepley @*/ 3878d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexGetFaceGeometry(DM dm, PetscInt fStart, PetscInt fEnd, Vec faceGeometry, Vec cellGeometry, PetscInt *Nface, PetscFVFaceGeom **fgeom, PetscReal **vol) 3879d71ae5a4SJacob Faibussowitsch { 38802f856554SMatthew G. Knepley DM dmFace, dmCell; 38812f856554SMatthew G. Knepley DMLabel ghostLabel; 38822f856554SMatthew G. Knepley const PetscScalar *facegeom, *cellgeom; 38832f856554SMatthew G. Knepley PetscInt dim, numFaces = fEnd - fStart, iface, face; 38842f856554SMatthew G. Knepley 38852f856554SMatthew G. Knepley PetscFunctionBegin; 38862f856554SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 38872f856554SMatthew G. Knepley PetscValidHeaderSpecific(faceGeometry, VEC_CLASSID, 4); 38882f856554SMatthew G. Knepley PetscValidHeaderSpecific(cellGeometry, VEC_CLASSID, 5); 38894f572ea9SToby Isaac PetscAssertPointer(fgeom, 7); 38904f572ea9SToby Isaac PetscAssertPointer(vol, 8); 38919566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 38929566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, "ghost", &ghostLabel)); 38939566063dSJacob Faibussowitsch PetscCall(VecGetDM(faceGeometry, &dmFace)); 38949566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(faceGeometry, &facegeom)); 38959566063dSJacob Faibussowitsch PetscCall(VecGetDM(cellGeometry, &dmCell)); 38969566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(cellGeometry, &cellgeom)); 38979566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(numFaces, fgeom)); 38989566063dSJacob Faibussowitsch PetscCall(DMGetWorkArray(dm, numFaces * 2, MPIU_SCALAR, vol)); 38992f856554SMatthew G. Knepley for (face = fStart, iface = 0; face < fEnd; ++face) { 39002f856554SMatthew G. Knepley const PetscInt *cells; 39012f856554SMatthew G. Knepley PetscFVFaceGeom *fg; 39022f856554SMatthew G. Knepley PetscFVCellGeom *cgL, *cgR; 39032f856554SMatthew G. Knepley PetscFVFaceGeom *fgeoml = *fgeom; 39042f856554SMatthew G. Knepley PetscReal *voll = *vol; 39052f856554SMatthew G. Knepley PetscInt ghost, d, nchild, nsupp; 39062f856554SMatthew G. Knepley 39079566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(ghostLabel, face, &ghost)); 39089566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dm, face, &nsupp)); 39099566063dSJacob Faibussowitsch PetscCall(DMPlexGetTreeChildren(dm, face, &nchild, NULL)); 39102f856554SMatthew G. Knepley if (ghost >= 0 || nsupp > 2 || nchild > 0) continue; 39119566063dSJacob Faibussowitsch PetscCall(DMPlexPointLocalRead(dmFace, face, facegeom, &fg)); 39129566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(dm, face, &cells)); 39139566063dSJacob Faibussowitsch PetscCall(DMPlexPointLocalRead(dmCell, cells[0], cellgeom, &cgL)); 39149566063dSJacob Faibussowitsch PetscCall(DMPlexPointLocalRead(dmCell, cells[1], cellgeom, &cgR)); 39152f856554SMatthew G. Knepley for (d = 0; d < dim; ++d) { 39162f856554SMatthew G. Knepley fgeoml[iface].centroid[d] = fg->centroid[d]; 39172f856554SMatthew G. Knepley fgeoml[iface].normal[d] = fg->normal[d]; 39182f856554SMatthew G. Knepley } 39192f856554SMatthew G. Knepley voll[iface * 2 + 0] = cgL->volume; 39202f856554SMatthew G. Knepley voll[iface * 2 + 1] = cgR->volume; 39212f856554SMatthew G. Knepley ++iface; 39222f856554SMatthew G. Knepley } 39232f856554SMatthew G. Knepley *Nface = iface; 39249566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(faceGeometry, &facegeom)); 39259566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(cellGeometry, &cellgeom)); 39263ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 39272f856554SMatthew G. Knepley } 39282f856554SMatthew G. Knepley 39292f856554SMatthew G. Knepley /*@C 39302f856554SMatthew G. Knepley DMPlexRestoreFaceGeometry - Restore the field values values for a chunk of faces 39312f856554SMatthew G. Knepley 39322f856554SMatthew G. Knepley Input Parameters: 3933a1cb98faSBarry Smith + dm - The `DM` 39342f856554SMatthew G. Knepley . fStart - The first face to include 39352f856554SMatthew G. Knepley . fEnd - The first face to exclude 39362f856554SMatthew G. Knepley . faceGeometry - A local vector with face geometry 39372f856554SMatthew G. Knepley - cellGeometry - A local vector with cell geometry 39382f856554SMatthew G. Knepley 39392f856554SMatthew G. Knepley Output Parameters: 39402f856554SMatthew G. Knepley + Nface - The number of faces with field values 39412f856554SMatthew G. Knepley . fgeom - The extract the face centroid and normal 39422f856554SMatthew G. Knepley - vol - The cell volume 39432f856554SMatthew G. Knepley 39442f856554SMatthew G. Knepley Level: developer 39452f856554SMatthew G. Knepley 39461cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexGetFaceFields()` 39472f856554SMatthew G. Knepley @*/ 3948d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexRestoreFaceGeometry(DM dm, PetscInt fStart, PetscInt fEnd, Vec faceGeometry, Vec cellGeometry, PetscInt *Nface, PetscFVFaceGeom **fgeom, PetscReal **vol) 3949d71ae5a4SJacob Faibussowitsch { 39502f856554SMatthew G. Knepley PetscFunctionBegin; 39519566063dSJacob Faibussowitsch PetscCall(PetscFree(*fgeom)); 39529566063dSJacob Faibussowitsch PetscCall(DMRestoreWorkArray(dm, 0, MPIU_REAL, vol)); 39533ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 39542f856554SMatthew G. Knepley } 39552f856554SMatthew G. Knepley 3956d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSNESGetFEGeom(DMField coordField, IS pointIS, PetscQuadrature quad, PetscBool faceData, PetscFEGeom **geom) 3957d71ae5a4SJacob Faibussowitsch { 3958a1cf66bbSMatthew G. Knepley char composeStr[33] = {0}; 3959a1cf66bbSMatthew G. Knepley PetscObjectId id; 3960a1cf66bbSMatthew G. Knepley PetscContainer container; 3961a1cf66bbSMatthew G. Knepley 3962a1cf66bbSMatthew G. Knepley PetscFunctionBegin; 39639566063dSJacob Faibussowitsch PetscCall(PetscObjectGetId((PetscObject)quad, &id)); 396463a3b9bcSJacob Faibussowitsch PetscCall(PetscSNPrintf(composeStr, 32, "DMSNESGetFEGeom_%" PetscInt64_FMT "\n", id)); 39659566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)pointIS, composeStr, (PetscObject *)&container)); 3966a1cf66bbSMatthew G. Knepley if (container) { 39679566063dSJacob Faibussowitsch PetscCall(PetscContainerGetPointer(container, (void **)geom)); 3968a1cf66bbSMatthew G. Knepley } else { 39699566063dSJacob Faibussowitsch PetscCall(DMFieldCreateFEGeom(coordField, pointIS, quad, faceData, geom)); 39709566063dSJacob Faibussowitsch PetscCall(PetscContainerCreate(PETSC_COMM_SELF, &container)); 39719566063dSJacob Faibussowitsch PetscCall(PetscContainerSetPointer(container, (void *)*geom)); 39729566063dSJacob Faibussowitsch PetscCall(PetscContainerSetUserDestroy(container, PetscContainerUserDestroy_PetscFEGeom)); 39739566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)pointIS, composeStr, (PetscObject)container)); 39749566063dSJacob Faibussowitsch PetscCall(PetscContainerDestroy(&container)); 3975a1cf66bbSMatthew G. Knepley } 39763ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3977a1cf66bbSMatthew G. Knepley } 3978a1cf66bbSMatthew G. Knepley 3979d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSNESRestoreFEGeom(DMField coordField, IS pointIS, PetscQuadrature quad, PetscBool faceData, PetscFEGeom **geom) 3980d71ae5a4SJacob Faibussowitsch { 3981a1cf66bbSMatthew G. Knepley PetscFunctionBegin; 3982a1cf66bbSMatthew G. Knepley *geom = NULL; 39833ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3984a1cf66bbSMatthew G. Knepley } 3985a1cf66bbSMatthew G. Knepley 3986d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeResidual_Patch_Internal(DM dm, PetscSection section, IS cellIS, PetscReal t, Vec locX, Vec locX_t, Vec locF, void *user) 3987d71ae5a4SJacob Faibussowitsch { 398892d50984SMatthew G. Knepley DM_Plex *mesh = (DM_Plex *)dm->data; 398992d50984SMatthew G. Knepley const char *name = "Residual"; 399092d50984SMatthew G. Knepley DM dmAux = NULL; 399192d50984SMatthew G. Knepley DMLabel ghostLabel = NULL; 399292d50984SMatthew G. Knepley PetscDS prob = NULL; 399392d50984SMatthew G. Knepley PetscDS probAux = NULL; 399492d50984SMatthew G. Knepley PetscBool useFEM = PETSC_FALSE; 399592d50984SMatthew G. Knepley PetscBool isImplicit = (locX_t || t == PETSC_MIN_REAL) ? PETSC_TRUE : PETSC_FALSE; 399692d50984SMatthew G. Knepley DMField coordField = NULL; 3997c0006e53SPatrick Farrell Vec locA; 3998c0006e53SPatrick Farrell PetscScalar *u = NULL, *u_t, *a, *uL = NULL, *uR = NULL; 399992d50984SMatthew G. Knepley IS chunkIS; 400092d50984SMatthew G. Knepley const PetscInt *cells; 400192d50984SMatthew G. Knepley PetscInt cStart, cEnd, numCells; 4002364207b6SKarl Rupp PetscInt Nf, f, totDim, totDimAux, numChunks, cellChunkSize, chunk, fStart, fEnd; 400392d50984SMatthew G. Knepley PetscInt maxDegree = PETSC_MAX_INT; 400406ad1575SMatthew G. Knepley PetscFormKey key; 400592d50984SMatthew G. Knepley PetscQuadrature affineQuad = NULL, *quads = NULL; 400692d50984SMatthew G. Knepley PetscFEGeom *affineGeom = NULL, **geoms = NULL; 400792d50984SMatthew G. Knepley 400892d50984SMatthew G. Knepley PetscFunctionBegin; 40099566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DMPLEX_ResidualFEM, dm, 0, 0, 0)); 401092d50984SMatthew G. Knepley /* FEM+FVM */ 401192d50984SMatthew G. Knepley /* 1: Get sizes from dm and dmAux */ 40129566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, "ghost", &ghostLabel)); 40139566063dSJacob Faibussowitsch PetscCall(DMGetDS(dm, &prob)); 40149566063dSJacob Faibussowitsch PetscCall(PetscDSGetNumFields(prob, &Nf)); 40159566063dSJacob Faibussowitsch PetscCall(PetscDSGetTotalDimension(prob, &totDim)); 40169566063dSJacob Faibussowitsch PetscCall(DMGetAuxiliaryVec(dm, NULL, 0, 0, &locA)); 401792d50984SMatthew G. Knepley if (locA) { 40189566063dSJacob Faibussowitsch PetscCall(VecGetDM(locA, &dmAux)); 40199566063dSJacob Faibussowitsch PetscCall(DMGetDS(dmAux, &probAux)); 40209566063dSJacob Faibussowitsch PetscCall(PetscDSGetTotalDimension(probAux, &totDimAux)); 402192d50984SMatthew G. Knepley } 402292d50984SMatthew G. Knepley /* 2: Get geometric data */ 402392d50984SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 402492d50984SMatthew G. Knepley PetscObject obj; 402592d50984SMatthew G. Knepley PetscClassId id; 402692d50984SMatthew G. Knepley PetscBool fimp; 402792d50984SMatthew G. Knepley 40289566063dSJacob Faibussowitsch PetscCall(PetscDSGetImplicit(prob, f, &fimp)); 402992d50984SMatthew G. Knepley if (isImplicit != fimp) continue; 40309566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(prob, f, &obj)); 40319566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 4032ad540459SPierre Jolivet if (id == PETSCFE_CLASSID) useFEM = PETSC_TRUE; 40335f80ce2aSJacob Faibussowitsch PetscCheck(id != PETSCFV_CLASSID, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Use of FVM with PCPATCH not yet implemented"); 403492d50984SMatthew G. Knepley } 403592d50984SMatthew G. Knepley if (useFEM) { 40369566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateField(dm, &coordField)); 40379566063dSJacob Faibussowitsch PetscCall(DMFieldGetDegree(coordField, cellIS, NULL, &maxDegree)); 403892d50984SMatthew G. Knepley if (maxDegree <= 1) { 40399566063dSJacob Faibussowitsch PetscCall(DMFieldCreateDefaultQuadrature(coordField, cellIS, &affineQuad)); 404048a46eb9SPierre Jolivet if (affineQuad) PetscCall(DMSNESGetFEGeom(coordField, cellIS, affineQuad, PETSC_FALSE, &affineGeom)); 404192d50984SMatthew G. Knepley } else { 40429566063dSJacob Faibussowitsch PetscCall(PetscCalloc2(Nf, &quads, Nf, &geoms)); 404392d50984SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 404492d50984SMatthew G. Knepley PetscObject obj; 404592d50984SMatthew G. Knepley PetscClassId id; 404692d50984SMatthew G. Knepley PetscBool fimp; 404792d50984SMatthew G. Knepley 40489566063dSJacob Faibussowitsch PetscCall(PetscDSGetImplicit(prob, f, &fimp)); 404992d50984SMatthew G. Knepley if (isImplicit != fimp) continue; 40509566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(prob, f, &obj)); 40519566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 405292d50984SMatthew G. Knepley if (id == PETSCFE_CLASSID) { 405392d50984SMatthew G. Knepley PetscFE fe = (PetscFE)obj; 405492d50984SMatthew G. Knepley 40559566063dSJacob Faibussowitsch PetscCall(PetscFEGetQuadrature(fe, &quads[f])); 40569566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)quads[f])); 40579566063dSJacob Faibussowitsch PetscCall(DMSNESGetFEGeom(coordField, cellIS, quads[f], PETSC_FALSE, &geoms[f])); 405892d50984SMatthew G. Knepley } 405992d50984SMatthew G. Knepley } 406092d50984SMatthew G. Knepley } 406192d50984SMatthew G. Knepley } 406292d50984SMatthew G. Knepley /* Loop over chunks */ 40639566063dSJacob Faibussowitsch PetscCall(ISGetPointRange(cellIS, &cStart, &cEnd, &cells)); 40649566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(dm, 1, &fStart, &fEnd)); 40659566063dSJacob Faibussowitsch if (useFEM) PetscCall(ISCreate(PETSC_COMM_SELF, &chunkIS)); 406692d50984SMatthew G. Knepley numCells = cEnd - cStart; 406792d50984SMatthew G. Knepley numChunks = 1; 406892d50984SMatthew G. Knepley cellChunkSize = numCells / numChunks; 406992d50984SMatthew G. Knepley numChunks = PetscMin(1, numCells); 40706528b96dSMatthew G. Knepley key.label = NULL; 40716528b96dSMatthew G. Knepley key.value = 0; 407206ad1575SMatthew G. Knepley key.part = 0; 407392d50984SMatthew G. Knepley for (chunk = 0; chunk < numChunks; ++chunk) { 4074c0006e53SPatrick Farrell PetscScalar *elemVec, *fluxL = NULL, *fluxR = NULL; 4075c0006e53SPatrick Farrell PetscReal *vol = NULL; 4076c0006e53SPatrick Farrell PetscFVFaceGeom *fgeom = NULL; 407792d50984SMatthew G. Knepley PetscInt cS = cStart + chunk * cellChunkSize, cE = PetscMin(cS + cellChunkSize, cEnd), numCells = cE - cS, c; 4078c0006e53SPatrick Farrell PetscInt numFaces = 0; 407992d50984SMatthew G. Knepley 408092d50984SMatthew G. Knepley /* Extract field coefficients */ 408192d50984SMatthew G. Knepley if (useFEM) { 40829566063dSJacob Faibussowitsch PetscCall(ISGetPointSubrange(chunkIS, cS, cE, cells)); 40839566063dSJacob Faibussowitsch PetscCall(DMPlexGetCellFields(dm, chunkIS, locX, locX_t, locA, &u, &u_t, &a)); 40849566063dSJacob Faibussowitsch PetscCall(DMGetWorkArray(dm, numCells * totDim, MPIU_SCALAR, &elemVec)); 40859566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(elemVec, numCells * totDim)); 408692d50984SMatthew G. Knepley } 408792d50984SMatthew G. Knepley /* TODO We will interlace both our field coefficients (u, u_t, uL, uR, etc.) and our output (elemVec, fL, fR). I think this works */ 408892d50984SMatthew G. Knepley /* Loop over fields */ 408992d50984SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 409092d50984SMatthew G. Knepley PetscObject obj; 409192d50984SMatthew G. Knepley PetscClassId id; 409292d50984SMatthew G. Knepley PetscBool fimp; 409392d50984SMatthew G. Knepley PetscInt numChunks, numBatches, batchSize, numBlocks, blockSize, Ne, Nr, offset; 409492d50984SMatthew G. Knepley 40956528b96dSMatthew G. Knepley key.field = f; 40969566063dSJacob Faibussowitsch PetscCall(PetscDSGetImplicit(prob, f, &fimp)); 409792d50984SMatthew G. Knepley if (isImplicit != fimp) continue; 40989566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(prob, f, &obj)); 40999566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 410092d50984SMatthew G. Knepley if (id == PETSCFE_CLASSID) { 410192d50984SMatthew G. Knepley PetscFE fe = (PetscFE)obj; 410292d50984SMatthew G. Knepley PetscFEGeom *geom = affineGeom ? affineGeom : geoms[f]; 410392d50984SMatthew G. Knepley PetscFEGeom *chunkGeom = NULL; 410492d50984SMatthew G. Knepley PetscQuadrature quad = affineQuad ? affineQuad : quads[f]; 410592d50984SMatthew G. Knepley PetscInt Nq, Nb; 410692d50984SMatthew G. Knepley 41079566063dSJacob Faibussowitsch PetscCall(PetscFEGetTileSizes(fe, NULL, &numBlocks, NULL, &numBatches)); 41089566063dSJacob Faibussowitsch PetscCall(PetscQuadratureGetData(quad, NULL, NULL, &Nq, NULL, NULL)); 41099566063dSJacob Faibussowitsch PetscCall(PetscFEGetDimension(fe, &Nb)); 411092d50984SMatthew G. Knepley blockSize = Nb; 411192d50984SMatthew G. Knepley batchSize = numBlocks * blockSize; 41129566063dSJacob Faibussowitsch PetscCall(PetscFESetTileSizes(fe, blockSize, numBlocks, batchSize, numBatches)); 411392d50984SMatthew G. Knepley numChunks = numCells / (numBatches * batchSize); 411492d50984SMatthew G. Knepley Ne = numChunks * numBatches * batchSize; 411592d50984SMatthew G. Knepley Nr = numCells % (numBatches * batchSize); 411692d50984SMatthew G. Knepley offset = numCells - Nr; 411792d50984SMatthew G. Knepley /* Integrate FE residual to get elemVec (need fields at quadrature points) */ 411892d50984SMatthew G. Knepley /* For FV, I think we use a P0 basis and the cell coefficients (for subdivided cells, we can tweak the basis tabulation to be the indicator function) */ 41199566063dSJacob Faibussowitsch PetscCall(PetscFEGeomGetChunk(geom, 0, offset, &chunkGeom)); 41209566063dSJacob Faibussowitsch PetscCall(PetscFEIntegrateResidual(prob, key, Ne, chunkGeom, u, u_t, probAux, a, t, elemVec)); 41219566063dSJacob Faibussowitsch PetscCall(PetscFEGeomGetChunk(geom, offset, numCells, &chunkGeom)); 41229566063dSJacob Faibussowitsch PetscCall(PetscFEIntegrateResidual(prob, key, Nr, chunkGeom, &u[offset * totDim], u_t ? &u_t[offset * totDim] : NULL, probAux, &a[offset * totDimAux], t, &elemVec[offset * totDim])); 41239566063dSJacob Faibussowitsch PetscCall(PetscFEGeomRestoreChunk(geom, offset, numCells, &chunkGeom)); 412492d50984SMatthew G. Knepley } else if (id == PETSCFV_CLASSID) { 412592d50984SMatthew G. Knepley PetscFV fv = (PetscFV)obj; 412692d50984SMatthew G. Knepley 412792d50984SMatthew G. Knepley Ne = numFaces; 412892d50984SMatthew G. Knepley /* Riemann solve over faces (need fields at face centroids) */ 412992d50984SMatthew G. Knepley /* We need to evaluate FE fields at those coordinates */ 41309566063dSJacob Faibussowitsch PetscCall(PetscFVIntegrateRHSFunction(fv, prob, f, Ne, fgeom, vol, uL, uR, fluxL, fluxR)); 413163a3b9bcSJacob Faibussowitsch } else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, f); 413292d50984SMatthew G. Knepley } 413392d50984SMatthew G. Knepley /* Loop over domain */ 413492d50984SMatthew G. Knepley if (useFEM) { 413592d50984SMatthew G. Knepley /* Add elemVec to locX */ 413692d50984SMatthew G. Knepley for (c = cS; c < cE; ++c) { 413792d50984SMatthew G. Knepley const PetscInt cell = cells ? cells[c] : c; 413892d50984SMatthew G. Knepley const PetscInt cind = c - cStart; 413992d50984SMatthew G. Knepley 41409566063dSJacob Faibussowitsch if (mesh->printFEM > 1) PetscCall(DMPrintCellVector(cell, name, totDim, &elemVec[cind * totDim])); 414192d50984SMatthew G. Knepley if (ghostLabel) { 414292d50984SMatthew G. Knepley PetscInt ghostVal; 414392d50984SMatthew G. Knepley 41449566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(ghostLabel, cell, &ghostVal)); 414592d50984SMatthew G. Knepley if (ghostVal > 0) continue; 414692d50984SMatthew G. Knepley } 41479566063dSJacob Faibussowitsch PetscCall(DMPlexVecSetClosure(dm, section, locF, cell, &elemVec[cind * totDim], ADD_ALL_VALUES)); 414892d50984SMatthew G. Knepley } 414992d50984SMatthew G. Knepley } 415092d50984SMatthew G. Knepley /* Handle time derivative */ 415192d50984SMatthew G. Knepley if (locX_t) { 415292d50984SMatthew G. Knepley PetscScalar *x_t, *fa; 415392d50984SMatthew G. Knepley 41549566063dSJacob Faibussowitsch PetscCall(VecGetArray(locF, &fa)); 41559566063dSJacob Faibussowitsch PetscCall(VecGetArray(locX_t, &x_t)); 415692d50984SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 415792d50984SMatthew G. Knepley PetscFV fv; 415892d50984SMatthew G. Knepley PetscObject obj; 415992d50984SMatthew G. Knepley PetscClassId id; 416092d50984SMatthew G. Knepley PetscInt pdim, d; 416192d50984SMatthew G. Knepley 41629566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(prob, f, &obj)); 41639566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 416492d50984SMatthew G. Knepley if (id != PETSCFV_CLASSID) continue; 416592d50984SMatthew G. Knepley fv = (PetscFV)obj; 41669566063dSJacob Faibussowitsch PetscCall(PetscFVGetNumComponents(fv, &pdim)); 416792d50984SMatthew G. Knepley for (c = cS; c < cE; ++c) { 416892d50984SMatthew G. Knepley const PetscInt cell = cells ? cells[c] : c; 416992d50984SMatthew G. Knepley PetscScalar *u_t, *r; 417092d50984SMatthew G. Knepley 417192d50984SMatthew G. Knepley if (ghostLabel) { 417292d50984SMatthew G. Knepley PetscInt ghostVal; 417392d50984SMatthew G. Knepley 41749566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(ghostLabel, cell, &ghostVal)); 417592d50984SMatthew G. Knepley if (ghostVal > 0) continue; 417692d50984SMatthew G. Knepley } 41779566063dSJacob Faibussowitsch PetscCall(DMPlexPointLocalFieldRead(dm, cell, f, x_t, &u_t)); 41789566063dSJacob Faibussowitsch PetscCall(DMPlexPointLocalFieldRef(dm, cell, f, fa, &r)); 417992d50984SMatthew G. Knepley for (d = 0; d < pdim; ++d) r[d] += u_t[d]; 418092d50984SMatthew G. Knepley } 418192d50984SMatthew G. Knepley } 41829566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(locX_t, &x_t)); 41839566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(locF, &fa)); 418492d50984SMatthew G. Knepley } 418592d50984SMatthew G. Knepley if (useFEM) { 41869566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreCellFields(dm, chunkIS, locX, locX_t, locA, &u, &u_t, &a)); 41879566063dSJacob Faibussowitsch PetscCall(DMRestoreWorkArray(dm, numCells * totDim, MPIU_SCALAR, &elemVec)); 418892d50984SMatthew G. Knepley } 418992d50984SMatthew G. Knepley } 41909566063dSJacob Faibussowitsch if (useFEM) PetscCall(ISDestroy(&chunkIS)); 41919566063dSJacob Faibussowitsch PetscCall(ISRestorePointRange(cellIS, &cStart, &cEnd, &cells)); 419292d50984SMatthew G. Knepley /* TODO Could include boundary residual here (see DMPlexComputeResidual_Internal) */ 419392d50984SMatthew G. Knepley if (useFEM) { 419492d50984SMatthew G. Knepley if (maxDegree <= 1) { 41959566063dSJacob Faibussowitsch PetscCall(DMSNESRestoreFEGeom(coordField, cellIS, affineQuad, PETSC_FALSE, &affineGeom)); 41969566063dSJacob Faibussowitsch PetscCall(PetscQuadratureDestroy(&affineQuad)); 419792d50984SMatthew G. Knepley } else { 419892d50984SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 41999566063dSJacob Faibussowitsch PetscCall(DMSNESRestoreFEGeom(coordField, cellIS, quads[f], PETSC_FALSE, &geoms[f])); 42009566063dSJacob Faibussowitsch PetscCall(PetscQuadratureDestroy(&quads[f])); 420192d50984SMatthew G. Knepley } 42029566063dSJacob Faibussowitsch PetscCall(PetscFree2(quads, geoms)); 420392d50984SMatthew G. Knepley } 420492d50984SMatthew G. Knepley } 42059566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DMPLEX_ResidualFEM, dm, 0, 0, 0)); 42063ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 420792d50984SMatthew G. Knepley } 420892d50984SMatthew G. Knepley 4209a1cf66bbSMatthew G. Knepley /* 4210a1cf66bbSMatthew G. Knepley We always assemble JacP, and if the matrix is different from Jac and two different sets of point functions are provided, we also assemble Jac 4211a1cf66bbSMatthew G. Knepley 4212a1cf66bbSMatthew G. Knepley X - The local solution vector 4213a5b23f4aSJose E. Roman X_t - The local solution time derivative vector, or NULL 4214a1cf66bbSMatthew G. Knepley */ 4215d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeJacobian_Patch_Internal(DM dm, PetscSection section, PetscSection globalSection, IS cellIS, PetscReal t, PetscReal X_tShift, Vec X, Vec X_t, Mat Jac, Mat JacP, void *ctx) 4216d71ae5a4SJacob Faibussowitsch { 4217a1cf66bbSMatthew G. Knepley DM_Plex *mesh = (DM_Plex *)dm->data; 4218a1cf66bbSMatthew G. Knepley const char *name = "Jacobian", *nameP = "JacobianPre"; 4219a1cf66bbSMatthew G. Knepley DM dmAux = NULL; 4220a1cf66bbSMatthew G. Knepley PetscDS prob, probAux = NULL; 4221a1cf66bbSMatthew G. Knepley PetscSection sectionAux = NULL; 4222a1cf66bbSMatthew G. Knepley Vec A; 4223a1cf66bbSMatthew G. Knepley DMField coordField; 4224a1cf66bbSMatthew G. Knepley PetscFEGeom *cgeomFEM; 4225a1cf66bbSMatthew G. Knepley PetscQuadrature qGeom = NULL; 4226a1cf66bbSMatthew G. Knepley Mat J = Jac, JP = JacP; 4227a1cf66bbSMatthew G. Knepley PetscScalar *work, *u = NULL, *u_t = NULL, *a = NULL, *elemMat = NULL, *elemMatP = NULL, *elemMatD = NULL; 4228e432b41dSStefano Zampini PetscBool hasJac, hasPrec, hasDyn, assembleJac, *isFE, hasFV = PETSC_FALSE; 4229a1cf66bbSMatthew G. Knepley const PetscInt *cells; 423006ad1575SMatthew G. Knepley PetscFormKey key; 42319b2fc754SMatthew G. Knepley PetscInt Nf, fieldI, fieldJ, maxDegree, numCells, cStart, cEnd, numChunks, chunkSize, chunk, totDim, totDimAux = 0, sz, wsz, off = 0, offCell = 0; 4232a1cf66bbSMatthew G. Knepley 4233a1cf66bbSMatthew G. Knepley PetscFunctionBegin; 42349566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(cellIS, &numCells)); 42359566063dSJacob Faibussowitsch PetscCall(ISGetPointRange(cellIS, &cStart, &cEnd, &cells)); 42369566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DMPLEX_JacobianFEM, dm, 0, 0, 0)); 42379566063dSJacob Faibussowitsch PetscCall(DMGetDS(dm, &prob)); 42389566063dSJacob Faibussowitsch PetscCall(DMGetAuxiliaryVec(dm, NULL, 0, 0, &A)); 42399a2a23afSMatthew G. Knepley if (A) { 42409566063dSJacob Faibussowitsch PetscCall(VecGetDM(A, &dmAux)); 42419566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dmAux, §ionAux)); 42429566063dSJacob Faibussowitsch PetscCall(DMGetDS(dmAux, &probAux)); 4243a1cf66bbSMatthew G. Knepley } 4244a1cf66bbSMatthew G. Knepley /* Get flags */ 42459566063dSJacob Faibussowitsch PetscCall(PetscDSGetNumFields(prob, &Nf)); 42469566063dSJacob Faibussowitsch PetscCall(DMGetWorkArray(dm, Nf, MPIU_BOOL, &isFE)); 4247a1cf66bbSMatthew G. Knepley for (fieldI = 0; fieldI < Nf; ++fieldI) { 4248a1cf66bbSMatthew G. Knepley PetscObject disc; 4249a1cf66bbSMatthew G. Knepley PetscClassId id; 42509566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(prob, fieldI, &disc)); 42519566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(disc, &id)); 42529371c9d4SSatish Balay if (id == PETSCFE_CLASSID) { 42539371c9d4SSatish Balay isFE[fieldI] = PETSC_TRUE; 42549371c9d4SSatish Balay } else if (id == PETSCFV_CLASSID) { 42559371c9d4SSatish Balay hasFV = PETSC_TRUE; 42569371c9d4SSatish Balay isFE[fieldI] = PETSC_FALSE; 42579371c9d4SSatish Balay } 4258a1cf66bbSMatthew G. Knepley } 42599566063dSJacob Faibussowitsch PetscCall(PetscDSHasJacobian(prob, &hasJac)); 42609566063dSJacob Faibussowitsch PetscCall(PetscDSHasJacobianPreconditioner(prob, &hasPrec)); 42619566063dSJacob Faibussowitsch PetscCall(PetscDSHasDynamicJacobian(prob, &hasDyn)); 4262a1cf66bbSMatthew G. Knepley assembleJac = hasJac && hasPrec && (Jac != JacP) ? PETSC_TRUE : PETSC_FALSE; 4263a1cf66bbSMatthew G. Knepley hasDyn = hasDyn && (X_tShift != 0.0) ? PETSC_TRUE : PETSC_FALSE; 42649566063dSJacob Faibussowitsch if (hasFV) PetscCall(MatSetOption(JP, MAT_IGNORE_ZERO_ENTRIES, PETSC_TRUE)); /* No allocated space for FV stuff, so ignore the zero entries */ 42659566063dSJacob Faibussowitsch PetscCall(PetscDSGetTotalDimension(prob, &totDim)); 42669566063dSJacob Faibussowitsch if (probAux) PetscCall(PetscDSGetTotalDimension(probAux, &totDimAux)); 4267a1cf66bbSMatthew G. Knepley /* Compute batch sizes */ 4268a1cf66bbSMatthew G. Knepley if (isFE[0]) { 4269a1cf66bbSMatthew G. Knepley PetscFE fe; 4270a1cf66bbSMatthew G. Knepley PetscQuadrature q; 4271a1cf66bbSMatthew G. Knepley PetscInt numQuadPoints, numBatches, batchSize, numBlocks, blockSize, Nb; 4272a1cf66bbSMatthew G. Knepley 42739566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(prob, 0, (PetscObject *)&fe)); 42749566063dSJacob Faibussowitsch PetscCall(PetscFEGetQuadrature(fe, &q)); 42759566063dSJacob Faibussowitsch PetscCall(PetscQuadratureGetData(q, NULL, NULL, &numQuadPoints, NULL, NULL)); 42769566063dSJacob Faibussowitsch PetscCall(PetscFEGetDimension(fe, &Nb)); 42779566063dSJacob Faibussowitsch PetscCall(PetscFEGetTileSizes(fe, NULL, &numBlocks, NULL, &numBatches)); 4278a1cf66bbSMatthew G. Knepley blockSize = Nb * numQuadPoints; 4279a1cf66bbSMatthew G. Knepley batchSize = numBlocks * blockSize; 4280a1cf66bbSMatthew G. Knepley chunkSize = numBatches * batchSize; 4281a1cf66bbSMatthew G. Knepley numChunks = numCells / chunkSize + numCells % chunkSize; 42829566063dSJacob Faibussowitsch PetscCall(PetscFESetTileSizes(fe, blockSize, numBlocks, batchSize, numBatches)); 4283a1cf66bbSMatthew G. Knepley } else { 4284a1cf66bbSMatthew G. Knepley chunkSize = numCells; 4285a1cf66bbSMatthew G. Knepley numChunks = 1; 4286a1cf66bbSMatthew G. Knepley } 4287a1cf66bbSMatthew G. Knepley /* Get work space */ 4288a1cf66bbSMatthew G. Knepley wsz = (((X ? 1 : 0) + (X_t ? 1 : 0) + (dmAux ? 1 : 0)) * totDim + ((hasJac ? 1 : 0) + (hasPrec ? 1 : 0) + (hasDyn ? 1 : 0)) * totDim * totDim) * chunkSize; 42899566063dSJacob Faibussowitsch PetscCall(DMGetWorkArray(dm, wsz, MPIU_SCALAR, &work)); 42909566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(work, wsz)); 4291a1cf66bbSMatthew G. Knepley off = 0; 4292a1cf66bbSMatthew G. Knepley u = X ? (sz = chunkSize * totDim, off += sz, work + off - sz) : NULL; 4293a1cf66bbSMatthew G. Knepley u_t = X_t ? (sz = chunkSize * totDim, off += sz, work + off - sz) : NULL; 4294a1cf66bbSMatthew G. Knepley a = dmAux ? (sz = chunkSize * totDimAux, off += sz, work + off - sz) : NULL; 4295a1cf66bbSMatthew G. Knepley elemMat = hasJac ? (sz = chunkSize * totDim * totDim, off += sz, work + off - sz) : NULL; 4296a1cf66bbSMatthew G. Knepley elemMatP = hasPrec ? (sz = chunkSize * totDim * totDim, off += sz, work + off - sz) : NULL; 4297a1cf66bbSMatthew G. Knepley elemMatD = hasDyn ? (sz = chunkSize * totDim * totDim, off += sz, work + off - sz) : NULL; 429863a3b9bcSJacob Faibussowitsch PetscCheck(off == wsz, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Error is workspace size %" PetscInt_FMT " should be %" PetscInt_FMT, off, wsz); 4299a1cf66bbSMatthew G. Knepley /* Setup geometry */ 43009566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateField(dm, &coordField)); 43019566063dSJacob Faibussowitsch PetscCall(DMFieldGetDegree(coordField, cellIS, NULL, &maxDegree)); 43029566063dSJacob Faibussowitsch if (maxDegree <= 1) PetscCall(DMFieldCreateDefaultQuadrature(coordField, cellIS, &qGeom)); 4303a1cf66bbSMatthew G. Knepley if (!qGeom) { 4304a1cf66bbSMatthew G. Knepley PetscFE fe; 4305a1cf66bbSMatthew G. Knepley 43069566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(prob, 0, (PetscObject *)&fe)); 43079566063dSJacob Faibussowitsch PetscCall(PetscFEGetQuadrature(fe, &qGeom)); 43089566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)qGeom)); 4309a1cf66bbSMatthew G. Knepley } 43109566063dSJacob Faibussowitsch PetscCall(DMSNESGetFEGeom(coordField, cellIS, qGeom, PETSC_FALSE, &cgeomFEM)); 4311a1cf66bbSMatthew G. Knepley /* Compute volume integrals */ 43129566063dSJacob Faibussowitsch if (assembleJac) PetscCall(MatZeroEntries(J)); 43139566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(JP)); 43146528b96dSMatthew G. Knepley key.label = NULL; 43156528b96dSMatthew G. Knepley key.value = 0; 431606ad1575SMatthew G. Knepley key.part = 0; 4317a1cf66bbSMatthew G. Knepley for (chunk = 0; chunk < numChunks; ++chunk, offCell += chunkSize) { 4318a1cf66bbSMatthew G. Knepley const PetscInt Ncell = PetscMin(chunkSize, numCells - offCell); 4319a1cf66bbSMatthew G. Knepley PetscInt c; 4320a1cf66bbSMatthew G. Knepley 4321a1cf66bbSMatthew G. Knepley /* Extract values */ 4322a1cf66bbSMatthew G. Knepley for (c = 0; c < Ncell; ++c) { 4323a1cf66bbSMatthew G. Knepley const PetscInt cell = cells ? cells[c + offCell] : c + offCell; 4324a1cf66bbSMatthew G. Knepley PetscScalar *x = NULL, *x_t = NULL; 4325a1cf66bbSMatthew G. Knepley PetscInt i; 4326a1cf66bbSMatthew G. Knepley 4327a1cf66bbSMatthew G. Knepley if (X) { 43289566063dSJacob Faibussowitsch PetscCall(DMPlexVecGetClosure(dm, section, X, cell, NULL, &x)); 4329a1cf66bbSMatthew G. Knepley for (i = 0; i < totDim; ++i) u[c * totDim + i] = x[i]; 43309566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(dm, section, X, cell, NULL, &x)); 4331a1cf66bbSMatthew G. Knepley } 4332a1cf66bbSMatthew G. Knepley if (X_t) { 43339566063dSJacob Faibussowitsch PetscCall(DMPlexVecGetClosure(dm, section, X_t, cell, NULL, &x_t)); 4334a1cf66bbSMatthew G. Knepley for (i = 0; i < totDim; ++i) u_t[c * totDim + i] = x_t[i]; 43359566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(dm, section, X_t, cell, NULL, &x_t)); 4336a1cf66bbSMatthew G. Knepley } 4337a1cf66bbSMatthew G. Knepley if (dmAux) { 43389566063dSJacob Faibussowitsch PetscCall(DMPlexVecGetClosure(dmAux, sectionAux, A, cell, NULL, &x)); 4339a1cf66bbSMatthew G. Knepley for (i = 0; i < totDimAux; ++i) a[c * totDimAux + i] = x[i]; 43409566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(dmAux, sectionAux, A, cell, NULL, &x)); 4341a1cf66bbSMatthew G. Knepley } 4342a1cf66bbSMatthew G. Knepley } 4343a1cf66bbSMatthew G. Knepley for (fieldI = 0; fieldI < Nf; ++fieldI) { 4344a1cf66bbSMatthew G. Knepley PetscFE fe; 43459566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(prob, fieldI, (PetscObject *)&fe)); 4346a1cf66bbSMatthew G. Knepley for (fieldJ = 0; fieldJ < Nf; ++fieldJ) { 43476528b96dSMatthew G. Knepley key.field = fieldI * Nf + fieldJ; 43489566063dSJacob Faibussowitsch if (hasJac) PetscCall(PetscFEIntegrateJacobian(prob, PETSCFE_JACOBIAN, key, Ncell, cgeomFEM, u, u_t, probAux, a, t, X_tShift, elemMat)); 43499566063dSJacob Faibussowitsch if (hasPrec) PetscCall(PetscFEIntegrateJacobian(prob, PETSCFE_JACOBIAN_PRE, key, Ncell, cgeomFEM, u, u_t, probAux, a, t, X_tShift, elemMatP)); 43509566063dSJacob Faibussowitsch if (hasDyn) PetscCall(PetscFEIntegrateJacobian(prob, PETSCFE_JACOBIAN_DYN, key, Ncell, cgeomFEM, u, u_t, probAux, a, t, X_tShift, elemMatD)); 4351a1cf66bbSMatthew G. Knepley } 4352a1cf66bbSMatthew G. Knepley /* For finite volume, add the identity */ 4353a1cf66bbSMatthew G. Knepley if (!isFE[fieldI]) { 4354a1cf66bbSMatthew G. Knepley PetscFV fv; 4355a1cf66bbSMatthew G. Knepley PetscInt eOffset = 0, Nc, fc, foff; 4356a1cf66bbSMatthew G. Knepley 43579566063dSJacob Faibussowitsch PetscCall(PetscDSGetFieldOffset(prob, fieldI, &foff)); 43589566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(prob, fieldI, (PetscObject *)&fv)); 43599566063dSJacob Faibussowitsch PetscCall(PetscFVGetNumComponents(fv, &Nc)); 4360a1cf66bbSMatthew G. Knepley for (c = 0; c < chunkSize; ++c, eOffset += totDim * totDim) { 4361a1cf66bbSMatthew G. Knepley for (fc = 0; fc < Nc; ++fc) { 4362a1cf66bbSMatthew G. Knepley const PetscInt i = foff + fc; 4363ad540459SPierre Jolivet if (hasJac) elemMat[eOffset + i * totDim + i] = 1.0; 4364ad540459SPierre Jolivet if (hasPrec) elemMatP[eOffset + i * totDim + i] = 1.0; 4365a1cf66bbSMatthew G. Knepley } 4366a1cf66bbSMatthew G. Knepley } 4367a1cf66bbSMatthew G. Knepley } 4368a1cf66bbSMatthew G. Knepley } 4369a1cf66bbSMatthew G. Knepley /* Add contribution from X_t */ 43709371c9d4SSatish Balay if (hasDyn) { 43719371c9d4SSatish Balay for (c = 0; c < chunkSize * totDim * totDim; ++c) elemMat[c] += X_tShift * elemMatD[c]; 43729371c9d4SSatish Balay } 4373a1cf66bbSMatthew G. Knepley /* Insert values into matrix */ 4374a1cf66bbSMatthew G. Knepley for (c = 0; c < Ncell; ++c) { 4375a1cf66bbSMatthew G. Knepley const PetscInt cell = cells ? cells[c + offCell] : c + offCell; 4376a1cf66bbSMatthew G. Knepley if (mesh->printFEM > 1) { 43779566063dSJacob Faibussowitsch if (hasJac) PetscCall(DMPrintCellMatrix(cell, name, totDim, totDim, &elemMat[(c - cStart) * totDim * totDim])); 43789566063dSJacob Faibussowitsch if (hasPrec) PetscCall(DMPrintCellMatrix(cell, nameP, totDim, totDim, &elemMatP[(c - cStart) * totDim * totDim])); 4379a1cf66bbSMatthew G. Knepley } 43809566063dSJacob Faibussowitsch if (assembleJac) PetscCall(DMPlexMatSetClosure(dm, section, globalSection, Jac, cell, &elemMat[(c - cStart) * totDim * totDim], ADD_VALUES)); 43819566063dSJacob Faibussowitsch PetscCall(DMPlexMatSetClosure(dm, section, globalSection, JP, cell, &elemMat[(c - cStart) * totDim * totDim], ADD_VALUES)); 4382a1cf66bbSMatthew G. Knepley } 4383a1cf66bbSMatthew G. Knepley } 4384a1cf66bbSMatthew G. Knepley /* Cleanup */ 43859566063dSJacob Faibussowitsch PetscCall(DMSNESRestoreFEGeom(coordField, cellIS, qGeom, PETSC_FALSE, &cgeomFEM)); 43869566063dSJacob Faibussowitsch PetscCall(PetscQuadratureDestroy(&qGeom)); 43879566063dSJacob Faibussowitsch if (hasFV) PetscCall(MatSetOption(JacP, MAT_IGNORE_ZERO_ENTRIES, PETSC_FALSE)); 43889566063dSJacob Faibussowitsch PetscCall(DMRestoreWorkArray(dm, Nf, MPIU_BOOL, &isFE)); 43899566063dSJacob Faibussowitsch PetscCall(DMRestoreWorkArray(dm, ((1 + (X_t ? 1 : 0) + (dmAux ? 1 : 0)) * totDim + ((hasJac ? 1 : 0) + (hasPrec ? 1 : 0) + (hasDyn ? 1 : 0)) * totDim * totDim) * chunkSize, MPIU_SCALAR, &work)); 4390a1cf66bbSMatthew G. Knepley /* Compute boundary integrals */ 43919566063dSJacob Faibussowitsch /* PetscCall(DMPlexComputeBdJacobian_Internal(dm, X, X_t, t, X_tShift, Jac, JacP, ctx)); */ 4392a1cf66bbSMatthew G. Knepley /* Assemble matrix */ 43939371c9d4SSatish Balay if (assembleJac) { 43949371c9d4SSatish Balay PetscCall(MatAssemblyBegin(Jac, MAT_FINAL_ASSEMBLY)); 43959371c9d4SSatish Balay PetscCall(MatAssemblyEnd(Jac, MAT_FINAL_ASSEMBLY)); 43969371c9d4SSatish Balay } 43979371c9d4SSatish Balay PetscCall(MatAssemblyBegin(JacP, MAT_FINAL_ASSEMBLY)); 43989371c9d4SSatish Balay PetscCall(MatAssemblyEnd(JacP, MAT_FINAL_ASSEMBLY)); 43999566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DMPLEX_JacobianFEM, dm, 0, 0, 0)); 44003ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4401a1cf66bbSMatthew G. Knepley } 44023e9753d6SMatthew G. Knepley 44033e9753d6SMatthew G. Knepley /******** FEM Assembly Function ********/ 44043e9753d6SMatthew G. Knepley 4405d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMConvertPlex_Internal(DM dm, DM *plex, PetscBool copy) 4406d71ae5a4SJacob Faibussowitsch { 44073e9753d6SMatthew G. Knepley PetscBool isPlex; 44083e9753d6SMatthew G. Knepley 44093e9753d6SMatthew G. Knepley PetscFunctionBegin; 44109566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)dm, DMPLEX, &isPlex)); 44113e9753d6SMatthew G. Knepley if (isPlex) { 44123e9753d6SMatthew G. Knepley *plex = dm; 44139566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)dm)); 44143e9753d6SMatthew G. Knepley } else { 44159566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)dm, "dm_plex", (PetscObject *)plex)); 44163e9753d6SMatthew G. Knepley if (!*plex) { 44179566063dSJacob Faibussowitsch PetscCall(DMConvert(dm, DMPLEX, plex)); 44189566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)dm, "dm_plex", (PetscObject)*plex)); 44191baa6e33SBarry Smith if (copy) PetscCall(DMCopyAuxiliaryVec(dm, *plex)); 44203e9753d6SMatthew G. Knepley } else { 44219566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)*plex)); 44223e9753d6SMatthew G. Knepley } 44233e9753d6SMatthew G. Knepley } 44243ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 44253e9753d6SMatthew G. Knepley } 44263e9753d6SMatthew G. Knepley 44273e9753d6SMatthew G. Knepley /*@ 44283e9753d6SMatthew G. Knepley DMPlexGetGeometryFVM - Return precomputed geometric data 44293e9753d6SMatthew G. Knepley 443020f4b53cSBarry Smith Collective 44313e9753d6SMatthew G. Knepley 44323e9753d6SMatthew G. Knepley Input Parameter: 4433a1cb98faSBarry Smith . dm - The `DM` 44343e9753d6SMatthew G. Knepley 44353e9753d6SMatthew G. Knepley Output Parameters: 44363e9753d6SMatthew G. Knepley + facegeom - The values precomputed from face geometry 44373e9753d6SMatthew G. Knepley . cellgeom - The values precomputed from cell geometry 44383e9753d6SMatthew G. Knepley - minRadius - The minimum radius over the mesh of an inscribed sphere in a cell 44393e9753d6SMatthew G. Knepley 44403e9753d6SMatthew G. Knepley Level: developer 44413e9753d6SMatthew G. Knepley 44421cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMTSSetRHSFunctionLocal()` 44433e9753d6SMatthew G. Knepley @*/ 4444d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexGetGeometryFVM(DM dm, Vec *facegeom, Vec *cellgeom, PetscReal *minRadius) 4445d71ae5a4SJacob Faibussowitsch { 44463e9753d6SMatthew G. Knepley DM plex; 44473e9753d6SMatthew G. Knepley 44483e9753d6SMatthew G. Knepley PetscFunctionBegin; 44493e9753d6SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 44509566063dSJacob Faibussowitsch PetscCall(DMConvertPlex_Internal(dm, &plex, PETSC_TRUE)); 44519566063dSJacob Faibussowitsch PetscCall(DMPlexGetDataFVM(plex, NULL, cellgeom, facegeom, NULL)); 44529566063dSJacob Faibussowitsch if (minRadius) PetscCall(DMPlexGetMinRadius(plex, minRadius)); 44539566063dSJacob Faibussowitsch PetscCall(DMDestroy(&plex)); 44543ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 44553e9753d6SMatthew G. Knepley } 44563e9753d6SMatthew G. Knepley 44573e9753d6SMatthew G. Knepley /*@ 44583e9753d6SMatthew G. Knepley DMPlexGetGradientDM - Return gradient data layout 44593e9753d6SMatthew G. Knepley 446020f4b53cSBarry Smith Collective 44613e9753d6SMatthew G. Knepley 44623e9753d6SMatthew G. Knepley Input Parameters: 4463a1cb98faSBarry Smith + dm - The `DM` 446420f4b53cSBarry Smith - fv - The `PetscFV` 44653e9753d6SMatthew G. Knepley 44663e9753d6SMatthew G. Knepley Output Parameter: 44673e9753d6SMatthew G. Knepley . dmGrad - The layout for gradient values 44683e9753d6SMatthew G. Knepley 44693e9753d6SMatthew G. Knepley Level: developer 44703e9753d6SMatthew G. Knepley 44711cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexGetGeometryFVM()` 44723e9753d6SMatthew G. Knepley @*/ 4473d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexGetGradientDM(DM dm, PetscFV fv, DM *dmGrad) 4474d71ae5a4SJacob Faibussowitsch { 44753e9753d6SMatthew G. Knepley DM plex; 44763e9753d6SMatthew G. Knepley PetscBool computeGradients; 44773e9753d6SMatthew G. Knepley 44783e9753d6SMatthew G. Knepley PetscFunctionBegin; 44793e9753d6SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 44803e9753d6SMatthew G. Knepley PetscValidHeaderSpecific(fv, PETSCFV_CLASSID, 2); 44814f572ea9SToby Isaac PetscAssertPointer(dmGrad, 3); 44829566063dSJacob Faibussowitsch PetscCall(PetscFVGetComputeGradients(fv, &computeGradients)); 44839371c9d4SSatish Balay if (!computeGradients) { 44849371c9d4SSatish Balay *dmGrad = NULL; 44853ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 44869371c9d4SSatish Balay } 44879566063dSJacob Faibussowitsch PetscCall(DMConvertPlex_Internal(dm, &plex, PETSC_TRUE)); 44889566063dSJacob Faibussowitsch PetscCall(DMPlexGetDataFVM(plex, fv, NULL, NULL, dmGrad)); 44899566063dSJacob Faibussowitsch PetscCall(DMDestroy(&plex)); 44903ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 44913e9753d6SMatthew G. Knepley } 44923e9753d6SMatthew G. Knepley 4493d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexComputeBdResidual_Single_Internal(DM dm, PetscReal t, PetscWeakForm wf, PetscFormKey key, Vec locX, Vec locX_t, Vec locF, DMField coordField, IS facetIS) 4494d71ae5a4SJacob Faibussowitsch { 44953e9753d6SMatthew G. Knepley DM_Plex *mesh = (DM_Plex *)dm->data; 44963e9753d6SMatthew G. Knepley DM plex = NULL, plexA = NULL; 44973e9753d6SMatthew G. Knepley DMEnclosureType encAux; 44983e9753d6SMatthew G. Knepley PetscDS prob, probAux = NULL; 44993e9753d6SMatthew G. Knepley PetscSection section, sectionAux = NULL; 45003e9753d6SMatthew G. Knepley Vec locA = NULL; 45013e9753d6SMatthew G. Knepley PetscScalar *u = NULL, *u_t = NULL, *a = NULL, *elemVec = NULL; 45023e9753d6SMatthew G. Knepley PetscInt totDim, totDimAux = 0; 45033e9753d6SMatthew G. Knepley 45043e9753d6SMatthew G. Knepley PetscFunctionBegin; 45059566063dSJacob Faibussowitsch PetscCall(DMConvert(dm, DMPLEX, &plex)); 45069566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, §ion)); 45079566063dSJacob Faibussowitsch PetscCall(DMGetDS(dm, &prob)); 45089566063dSJacob Faibussowitsch PetscCall(PetscDSGetTotalDimension(prob, &totDim)); 45099566063dSJacob Faibussowitsch PetscCall(DMGetAuxiliaryVec(dm, key.label, key.value, key.part, &locA)); 45103e9753d6SMatthew G. Knepley if (locA) { 45113e9753d6SMatthew G. Knepley DM dmAux; 45123e9753d6SMatthew G. Knepley 45139566063dSJacob Faibussowitsch PetscCall(VecGetDM(locA, &dmAux)); 45149566063dSJacob Faibussowitsch PetscCall(DMGetEnclosureRelation(dmAux, dm, &encAux)); 45159566063dSJacob Faibussowitsch PetscCall(DMConvert(dmAux, DMPLEX, &plexA)); 45169566063dSJacob Faibussowitsch PetscCall(DMGetDS(plexA, &probAux)); 45179566063dSJacob Faibussowitsch PetscCall(PetscDSGetTotalDimension(probAux, &totDimAux)); 45189566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(plexA, §ionAux)); 45193e9753d6SMatthew G. Knepley } 45200c290148SMatthew G. Knepley { 45213e9753d6SMatthew G. Knepley PetscFEGeom *fgeom; 45223e9753d6SMatthew G. Knepley PetscInt maxDegree; 45233e9753d6SMatthew G. Knepley PetscQuadrature qGeom = NULL; 45243e9753d6SMatthew G. Knepley IS pointIS; 45253e9753d6SMatthew G. Knepley const PetscInt *points; 45263e9753d6SMatthew G. Knepley PetscInt numFaces, face, Nq; 45273e9753d6SMatthew G. Knepley 45289566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(key.label, key.value, &pointIS)); 45290c290148SMatthew G. Knepley if (!pointIS) goto end; /* No points with that id on this process */ 45303e9753d6SMatthew G. Knepley { 45313e9753d6SMatthew G. Knepley IS isectIS; 45323e9753d6SMatthew G. Knepley 45333e9753d6SMatthew G. Knepley /* TODO: Special cases of ISIntersect where it is quick to check a priori if one is a superset of the other */ 45349566063dSJacob Faibussowitsch PetscCall(ISIntersect_Caching_Internal(facetIS, pointIS, &isectIS)); 45359566063dSJacob Faibussowitsch PetscCall(ISDestroy(&pointIS)); 45363e9753d6SMatthew G. Knepley pointIS = isectIS; 45373e9753d6SMatthew G. Knepley } 45389566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(pointIS, &numFaces)); 45399566063dSJacob Faibussowitsch PetscCall(ISGetIndices(pointIS, &points)); 45409566063dSJacob Faibussowitsch PetscCall(PetscMalloc4(numFaces * totDim, &u, locX_t ? numFaces * totDim : 0, &u_t, numFaces * totDim, &elemVec, locA ? numFaces * totDimAux : 0, &a)); 45419566063dSJacob Faibussowitsch PetscCall(DMFieldGetDegree(coordField, pointIS, NULL, &maxDegree)); 454248a46eb9SPierre Jolivet if (maxDegree <= 1) PetscCall(DMFieldCreateDefaultQuadrature(coordField, pointIS, &qGeom)); 45433e9753d6SMatthew G. Knepley if (!qGeom) { 45443e9753d6SMatthew G. Knepley PetscFE fe; 45453e9753d6SMatthew G. Knepley 45469566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(prob, key.field, (PetscObject *)&fe)); 45479566063dSJacob Faibussowitsch PetscCall(PetscFEGetFaceQuadrature(fe, &qGeom)); 45489566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)qGeom)); 45493e9753d6SMatthew G. Knepley } 45509566063dSJacob Faibussowitsch PetscCall(PetscQuadratureGetData(qGeom, NULL, NULL, &Nq, NULL, NULL)); 45519566063dSJacob Faibussowitsch PetscCall(DMSNESGetFEGeom(coordField, pointIS, qGeom, PETSC_TRUE, &fgeom)); 45523e9753d6SMatthew G. Knepley for (face = 0; face < numFaces; ++face) { 4553f15274beSMatthew Knepley const PetscInt point = points[face], *support; 45543e9753d6SMatthew G. Knepley PetscScalar *x = NULL; 4555f15274beSMatthew Knepley PetscInt i; 45563e9753d6SMatthew G. Knepley 45579566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(dm, point, &support)); 45589566063dSJacob Faibussowitsch PetscCall(DMPlexVecGetClosure(plex, section, locX, support[0], NULL, &x)); 45593e9753d6SMatthew G. Knepley for (i = 0; i < totDim; ++i) u[face * totDim + i] = x[i]; 45609566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(plex, section, locX, support[0], NULL, &x)); 45613e9753d6SMatthew G. Knepley if (locX_t) { 45629566063dSJacob Faibussowitsch PetscCall(DMPlexVecGetClosure(plex, section, locX_t, support[0], NULL, &x)); 45633e9753d6SMatthew G. Knepley for (i = 0; i < totDim; ++i) u_t[face * totDim + i] = x[i]; 45649566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(plex, section, locX_t, support[0], NULL, &x)); 45653e9753d6SMatthew G. Knepley } 45663e9753d6SMatthew G. Knepley if (locA) { 45673e9753d6SMatthew G. Knepley PetscInt subp; 45683e9753d6SMatthew G. Knepley 45699566063dSJacob Faibussowitsch PetscCall(DMGetEnclosurePoint(plexA, dm, encAux, support[0], &subp)); 45709566063dSJacob Faibussowitsch PetscCall(DMPlexVecGetClosure(plexA, sectionAux, locA, subp, NULL, &x)); 45713e9753d6SMatthew G. Knepley for (i = 0; i < totDimAux; ++i) a[face * totDimAux + i] = x[i]; 45729566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(plexA, sectionAux, locA, subp, NULL, &x)); 45733e9753d6SMatthew G. Knepley } 45743e9753d6SMatthew G. Knepley } 45759566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(elemVec, numFaces * totDim)); 45763e9753d6SMatthew G. Knepley { 45773e9753d6SMatthew G. Knepley PetscFE fe; 45783e9753d6SMatthew G. Knepley PetscInt Nb; 45793e9753d6SMatthew G. Knepley PetscFEGeom *chunkGeom = NULL; 45803e9753d6SMatthew G. Knepley /* Conforming batches */ 45813e9753d6SMatthew G. Knepley PetscInt numChunks, numBatches, numBlocks, Ne, blockSize, batchSize; 45823e9753d6SMatthew G. Knepley /* Remainder */ 45833e9753d6SMatthew G. Knepley PetscInt Nr, offset; 45843e9753d6SMatthew G. Knepley 45859566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(prob, key.field, (PetscObject *)&fe)); 45869566063dSJacob Faibussowitsch PetscCall(PetscFEGetDimension(fe, &Nb)); 45879566063dSJacob Faibussowitsch PetscCall(PetscFEGetTileSizes(fe, NULL, &numBlocks, NULL, &numBatches)); 45883e9753d6SMatthew G. Knepley /* TODO: documentation is unclear about what is going on with these numbers: how should Nb / Nq factor in ? */ 45893e9753d6SMatthew G. Knepley blockSize = Nb; 45903e9753d6SMatthew G. Knepley batchSize = numBlocks * blockSize; 45919566063dSJacob Faibussowitsch PetscCall(PetscFESetTileSizes(fe, blockSize, numBlocks, batchSize, numBatches)); 45923e9753d6SMatthew G. Knepley numChunks = numFaces / (numBatches * batchSize); 45933e9753d6SMatthew G. Knepley Ne = numChunks * numBatches * batchSize; 45943e9753d6SMatthew G. Knepley Nr = numFaces % (numBatches * batchSize); 45953e9753d6SMatthew G. Knepley offset = numFaces - Nr; 45969566063dSJacob Faibussowitsch PetscCall(PetscFEGeomGetChunk(fgeom, 0, offset, &chunkGeom)); 45979566063dSJacob Faibussowitsch PetscCall(PetscFEIntegrateBdResidual(prob, wf, key, Ne, chunkGeom, u, u_t, probAux, a, t, elemVec)); 45989566063dSJacob Faibussowitsch PetscCall(PetscFEGeomRestoreChunk(fgeom, 0, offset, &chunkGeom)); 45999566063dSJacob Faibussowitsch PetscCall(PetscFEGeomGetChunk(fgeom, offset, numFaces, &chunkGeom)); 46009566063dSJacob Faibussowitsch PetscCall(PetscFEIntegrateBdResidual(prob, wf, key, Nr, chunkGeom, &u[offset * totDim], u_t ? &u_t[offset * totDim] : NULL, probAux, a ? &a[offset * totDimAux] : NULL, t, &elemVec[offset * totDim])); 46019566063dSJacob Faibussowitsch PetscCall(PetscFEGeomRestoreChunk(fgeom, offset, numFaces, &chunkGeom)); 46023e9753d6SMatthew G. Knepley } 46033e9753d6SMatthew G. Knepley for (face = 0; face < numFaces; ++face) { 46043e9753d6SMatthew G. Knepley const PetscInt point = points[face], *support; 46053e9753d6SMatthew G. Knepley 46069566063dSJacob Faibussowitsch if (mesh->printFEM > 1) PetscCall(DMPrintCellVector(point, "BdResidual", totDim, &elemVec[face * totDim])); 46079566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(plex, point, &support)); 46089566063dSJacob Faibussowitsch PetscCall(DMPlexVecSetClosure(plex, NULL, locF, support[0], &elemVec[face * totDim], ADD_ALL_VALUES)); 46093e9753d6SMatthew G. Knepley } 46109566063dSJacob Faibussowitsch PetscCall(DMSNESRestoreFEGeom(coordField, pointIS, qGeom, PETSC_TRUE, &fgeom)); 46119566063dSJacob Faibussowitsch PetscCall(PetscQuadratureDestroy(&qGeom)); 46129566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(pointIS, &points)); 46139566063dSJacob Faibussowitsch PetscCall(ISDestroy(&pointIS)); 46149566063dSJacob Faibussowitsch PetscCall(PetscFree4(u, u_t, elemVec, a)); 46153e9753d6SMatthew G. Knepley } 46160c290148SMatthew G. Knepley end: 46179566063dSJacob Faibussowitsch PetscCall(DMDestroy(&plex)); 46189566063dSJacob Faibussowitsch PetscCall(DMDestroy(&plexA)); 46193ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 46203e9753d6SMatthew G. Knepley } 46213e9753d6SMatthew G. Knepley 4622d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeBdResidualSingle(DM dm, PetscReal t, PetscWeakForm wf, PetscFormKey key, Vec locX, Vec locX_t, Vec locF) 4623d71ae5a4SJacob Faibussowitsch { 46243e9753d6SMatthew G. Knepley DMField coordField; 46253e9753d6SMatthew G. Knepley DMLabel depthLabel; 46263e9753d6SMatthew G. Knepley IS facetIS; 46273e9753d6SMatthew G. Knepley PetscInt dim; 46283e9753d6SMatthew G. Knepley 46293e9753d6SMatthew G. Knepley PetscFunctionBegin; 46309566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 46319566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthLabel(dm, &depthLabel)); 46329566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(depthLabel, dim - 1, &facetIS)); 46339566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateField(dm, &coordField)); 46349566063dSJacob Faibussowitsch PetscCall(DMPlexComputeBdResidual_Single_Internal(dm, t, wf, key, locX, locX_t, locF, coordField, facetIS)); 46359566063dSJacob Faibussowitsch PetscCall(ISDestroy(&facetIS)); 46363ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 46373e9753d6SMatthew G. Knepley } 46383e9753d6SMatthew G. Knepley 4639*a4e35b19SJacob Faibussowitsch static PetscErrorCode DMPlexComputeBdResidual_Internal(DM dm, Vec locX, Vec locX_t, PetscReal t, Vec locF, void *user) 4640d71ae5a4SJacob Faibussowitsch { 46413e9753d6SMatthew G. Knepley PetscDS prob; 46423e9753d6SMatthew G. Knepley PetscInt numBd, bd; 46433e9753d6SMatthew G. Knepley DMField coordField = NULL; 46443e9753d6SMatthew G. Knepley IS facetIS = NULL; 46453e9753d6SMatthew G. Knepley DMLabel depthLabel; 46463e9753d6SMatthew G. Knepley PetscInt dim; 46473e9753d6SMatthew G. Knepley 46483e9753d6SMatthew G. Knepley PetscFunctionBegin; 46499566063dSJacob Faibussowitsch PetscCall(DMGetDS(dm, &prob)); 46509566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthLabel(dm, &depthLabel)); 46519566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 46529566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(depthLabel, dim - 1, &facetIS)); 46539566063dSJacob Faibussowitsch PetscCall(PetscDSGetNumBoundary(prob, &numBd)); 46543e9753d6SMatthew G. Knepley for (bd = 0; bd < numBd; ++bd) { 465545480ffeSMatthew G. Knepley PetscWeakForm wf; 46563e9753d6SMatthew G. Knepley DMBoundaryConditionType type; 46573e9753d6SMatthew G. Knepley DMLabel label; 46583e9753d6SMatthew G. Knepley const PetscInt *values; 46590c290148SMatthew G. Knepley PetscInt field, numValues, v; 46603e9753d6SMatthew G. Knepley PetscObject obj; 46613e9753d6SMatthew G. Knepley PetscClassId id; 46620c290148SMatthew G. Knepley PetscFormKey key; 46633e9753d6SMatthew G. Knepley 46649566063dSJacob Faibussowitsch PetscCall(PetscDSGetBoundary(prob, bd, &wf, &type, NULL, &label, &numValues, &values, &field, NULL, NULL, NULL, NULL, NULL)); 46653d3e5d66SMatthew G. Knepley if (type & DM_BC_ESSENTIAL) continue; 46669566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(prob, field, &obj)); 46679566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 46683d3e5d66SMatthew G. Knepley if (id != PETSCFE_CLASSID) continue; 46693e9753d6SMatthew G. Knepley if (!facetIS) { 46703e9753d6SMatthew G. Knepley DMLabel depthLabel; 46713e9753d6SMatthew G. Knepley PetscInt dim; 46723e9753d6SMatthew G. Knepley 46739566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthLabel(dm, &depthLabel)); 46749566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 46759566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(depthLabel, dim - 1, &facetIS)); 46763e9753d6SMatthew G. Knepley } 46779566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateField(dm, &coordField)); 46780c290148SMatthew G. Knepley for (v = 0; v < numValues; ++v) { 46790c290148SMatthew G. Knepley key.label = label; 46800c290148SMatthew G. Knepley key.value = values[v]; 46810c290148SMatthew G. Knepley key.field = field; 46820c290148SMatthew G. Knepley key.part = 0; 46839566063dSJacob Faibussowitsch PetscCall(DMPlexComputeBdResidual_Single_Internal(dm, t, wf, key, locX, locX_t, locF, coordField, facetIS)); 46840c290148SMatthew G. Knepley } 46853e9753d6SMatthew G. Knepley } 46869566063dSJacob Faibussowitsch PetscCall(ISDestroy(&facetIS)); 46873ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 46883e9753d6SMatthew G. Knepley } 46893e9753d6SMatthew G. Knepley 4690d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeResidual_Internal(DM dm, PetscFormKey key, IS cellIS, PetscReal time, Vec locX, Vec locX_t, PetscReal t, Vec locF, void *user) 4691d71ae5a4SJacob Faibussowitsch { 46923e9753d6SMatthew G. Knepley DM_Plex *mesh = (DM_Plex *)dm->data; 46933e9753d6SMatthew G. Knepley const char *name = "Residual"; 46943e9753d6SMatthew G. Knepley DM dmAux = NULL; 46953e9753d6SMatthew G. Knepley DM dmGrad = NULL; 46963e9753d6SMatthew G. Knepley DMLabel ghostLabel = NULL; 46976528b96dSMatthew G. Knepley PetscDS ds = NULL; 46986528b96dSMatthew G. Knepley PetscDS dsAux = NULL; 46993e9753d6SMatthew G. Knepley PetscSection section = NULL; 47003e9753d6SMatthew G. Knepley PetscBool useFEM = PETSC_FALSE; 47013e9753d6SMatthew G. Knepley PetscBool useFVM = PETSC_FALSE; 47023e9753d6SMatthew G. Knepley PetscBool isImplicit = (locX_t || time == PETSC_MIN_REAL) ? PETSC_TRUE : PETSC_FALSE; 47033e9753d6SMatthew G. Knepley PetscFV fvm = NULL; 47043e9753d6SMatthew G. Knepley PetscFVCellGeom *cgeomFVM = NULL; 47053e9753d6SMatthew G. Knepley PetscFVFaceGeom *fgeomFVM = NULL; 47063e9753d6SMatthew G. Knepley DMField coordField = NULL; 47073e9753d6SMatthew G. Knepley Vec locA, cellGeometryFVM = NULL, faceGeometryFVM = NULL, grad, locGrad = NULL; 47083e9753d6SMatthew G. Knepley PetscScalar *u = NULL, *u_t, *a, *uL, *uR; 47093e9753d6SMatthew G. Knepley IS chunkIS; 47103e9753d6SMatthew G. Knepley const PetscInt *cells; 47113e9753d6SMatthew G. Knepley PetscInt cStart, cEnd, numCells; 47123e9753d6SMatthew G. Knepley PetscInt Nf, f, totDim, totDimAux, numChunks, cellChunkSize, faceChunkSize, chunk, fStart, fEnd; 47133e9753d6SMatthew G. Knepley PetscInt maxDegree = PETSC_MAX_INT; 47143e9753d6SMatthew G. Knepley PetscQuadrature affineQuad = NULL, *quads = NULL; 47153e9753d6SMatthew G. Knepley PetscFEGeom *affineGeom = NULL, **geoms = NULL; 47163e9753d6SMatthew G. Knepley 47173e9753d6SMatthew G. Knepley PetscFunctionBegin; 47183ba16761SJacob Faibussowitsch if (!cellIS) PetscFunctionReturn(PETSC_SUCCESS); 4719437e83fbSMatthew G. Knepley PetscCall(ISGetPointRange(cellIS, &cStart, &cEnd, &cells)); 47203ba16761SJacob Faibussowitsch if (cStart >= cEnd) PetscFunctionReturn(PETSC_SUCCESS); 47219566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DMPLEX_ResidualFEM, dm, 0, 0, 0)); 47223e9753d6SMatthew G. Knepley /* TODO The places where we have to use isFE are probably the member functions for the PetscDisc class */ 47233e9753d6SMatthew G. Knepley /* TODO The FVM geometry is over-manipulated. Make the precalc functions return exactly what we need */ 47243e9753d6SMatthew G. Knepley /* FEM+FVM */ 47259566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(dm, 1, &fStart, &fEnd)); 47263e9753d6SMatthew G. Knepley /* 1: Get sizes from dm and dmAux */ 47279566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, §ion)); 47289566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, "ghost", &ghostLabel)); 472907218a29SMatthew G. Knepley PetscCall(DMGetCellDS(dm, cells ? cells[cStart] : cStart, &ds, NULL)); 47309566063dSJacob Faibussowitsch PetscCall(PetscDSGetNumFields(ds, &Nf)); 47319566063dSJacob Faibussowitsch PetscCall(PetscDSGetTotalDimension(ds, &totDim)); 47329566063dSJacob Faibussowitsch PetscCall(DMGetAuxiliaryVec(dm, key.label, key.value, key.part, &locA)); 47333e9753d6SMatthew G. Knepley if (locA) { 47343e9753d6SMatthew G. Knepley PetscInt subcell; 47359566063dSJacob Faibussowitsch PetscCall(VecGetDM(locA, &dmAux)); 47361059d808SMatthew G. Knepley PetscCall(DMGetEnclosurePoint(dmAux, dm, DM_ENC_UNKNOWN, cells ? cells[cStart] : cStart, &subcell)); 473707218a29SMatthew G. Knepley PetscCall(DMGetCellDS(dmAux, subcell, &dsAux, NULL)); 47389566063dSJacob Faibussowitsch PetscCall(PetscDSGetTotalDimension(dsAux, &totDimAux)); 47393e9753d6SMatthew G. Knepley } 47403e9753d6SMatthew G. Knepley /* 2: Get geometric data */ 47413e9753d6SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 47423e9753d6SMatthew G. Knepley PetscObject obj; 47433e9753d6SMatthew G. Knepley PetscClassId id; 47443e9753d6SMatthew G. Knepley PetscBool fimp; 47453e9753d6SMatthew G. Knepley 47469566063dSJacob Faibussowitsch PetscCall(PetscDSGetImplicit(ds, f, &fimp)); 47473e9753d6SMatthew G. Knepley if (isImplicit != fimp) continue; 47489566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(ds, f, &obj)); 47499566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 4750ad540459SPierre Jolivet if (id == PETSCFE_CLASSID) useFEM = PETSC_TRUE; 47519371c9d4SSatish Balay if (id == PETSCFV_CLASSID) { 47529371c9d4SSatish Balay useFVM = PETSC_TRUE; 47539371c9d4SSatish Balay fvm = (PetscFV)obj; 47549371c9d4SSatish Balay } 47553e9753d6SMatthew G. Knepley } 47563e9753d6SMatthew G. Knepley if (useFEM) { 47579566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateField(dm, &coordField)); 47589566063dSJacob Faibussowitsch PetscCall(DMFieldGetDegree(coordField, cellIS, NULL, &maxDegree)); 47593e9753d6SMatthew G. Knepley if (maxDegree <= 1) { 47609566063dSJacob Faibussowitsch PetscCall(DMFieldCreateDefaultQuadrature(coordField, cellIS, &affineQuad)); 476148a46eb9SPierre Jolivet if (affineQuad) PetscCall(DMSNESGetFEGeom(coordField, cellIS, affineQuad, PETSC_FALSE, &affineGeom)); 47623e9753d6SMatthew G. Knepley } else { 47639566063dSJacob Faibussowitsch PetscCall(PetscCalloc2(Nf, &quads, Nf, &geoms)); 47643e9753d6SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 47653e9753d6SMatthew G. Knepley PetscObject obj; 47663e9753d6SMatthew G. Knepley PetscClassId id; 47673e9753d6SMatthew G. Knepley PetscBool fimp; 47683e9753d6SMatthew G. Knepley 47699566063dSJacob Faibussowitsch PetscCall(PetscDSGetImplicit(ds, f, &fimp)); 47703e9753d6SMatthew G. Knepley if (isImplicit != fimp) continue; 47719566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(ds, f, &obj)); 47729566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 47733e9753d6SMatthew G. Knepley if (id == PETSCFE_CLASSID) { 47743e9753d6SMatthew G. Knepley PetscFE fe = (PetscFE)obj; 47753e9753d6SMatthew G. Knepley 47769566063dSJacob Faibussowitsch PetscCall(PetscFEGetQuadrature(fe, &quads[f])); 47779566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)quads[f])); 47789566063dSJacob Faibussowitsch PetscCall(DMSNESGetFEGeom(coordField, cellIS, quads[f], PETSC_FALSE, &geoms[f])); 47793e9753d6SMatthew G. Knepley } 47803e9753d6SMatthew G. Knepley } 47813e9753d6SMatthew G. Knepley } 47823e9753d6SMatthew G. Knepley } 47833e9753d6SMatthew G. Knepley if (useFVM) { 47849566063dSJacob Faibussowitsch PetscCall(DMPlexGetGeometryFVM(dm, &faceGeometryFVM, &cellGeometryFVM, NULL)); 47859566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(faceGeometryFVM, (const PetscScalar **)&fgeomFVM)); 47869566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(cellGeometryFVM, (const PetscScalar **)&cgeomFVM)); 47873e9753d6SMatthew G. Knepley /* Reconstruct and limit cell gradients */ 47889566063dSJacob Faibussowitsch PetscCall(DMPlexGetGradientDM(dm, fvm, &dmGrad)); 47893e9753d6SMatthew G. Knepley if (dmGrad) { 47909566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(dm, 1, &fStart, &fEnd)); 47919566063dSJacob Faibussowitsch PetscCall(DMGetGlobalVector(dmGrad, &grad)); 47929566063dSJacob Faibussowitsch PetscCall(DMPlexReconstructGradients_Internal(dm, fvm, fStart, fEnd, faceGeometryFVM, cellGeometryFVM, locX, grad)); 47933e9753d6SMatthew G. Knepley /* Communicate gradient values */ 47949566063dSJacob Faibussowitsch PetscCall(DMGetLocalVector(dmGrad, &locGrad)); 47959566063dSJacob Faibussowitsch PetscCall(DMGlobalToLocalBegin(dmGrad, grad, INSERT_VALUES, locGrad)); 47969566063dSJacob Faibussowitsch PetscCall(DMGlobalToLocalEnd(dmGrad, grad, INSERT_VALUES, locGrad)); 47979566063dSJacob Faibussowitsch PetscCall(DMRestoreGlobalVector(dmGrad, &grad)); 47983e9753d6SMatthew G. Knepley } 47993e9753d6SMatthew G. Knepley /* Handle non-essential (e.g. outflow) boundary values */ 48009566063dSJacob Faibussowitsch PetscCall(DMPlexInsertBoundaryValues(dm, PETSC_FALSE, locX, time, faceGeometryFVM, cellGeometryFVM, locGrad)); 48013e9753d6SMatthew G. Knepley } 48023e9753d6SMatthew G. Knepley /* Loop over chunks */ 48039566063dSJacob Faibussowitsch if (useFEM) PetscCall(ISCreate(PETSC_COMM_SELF, &chunkIS)); 48043e9753d6SMatthew G. Knepley numCells = cEnd - cStart; 48053e9753d6SMatthew G. Knepley numChunks = 1; 48063e9753d6SMatthew G. Knepley cellChunkSize = numCells / numChunks; 48073e9753d6SMatthew G. Knepley faceChunkSize = (fEnd - fStart) / numChunks; 48083e9753d6SMatthew G. Knepley numChunks = PetscMin(1, numCells); 48093e9753d6SMatthew G. Knepley for (chunk = 0; chunk < numChunks; ++chunk) { 48103e9753d6SMatthew G. Knepley PetscScalar *elemVec, *fluxL, *fluxR; 48113e9753d6SMatthew G. Knepley PetscReal *vol; 48123e9753d6SMatthew G. Knepley PetscFVFaceGeom *fgeom; 48133e9753d6SMatthew G. Knepley PetscInt cS = cStart + chunk * cellChunkSize, cE = PetscMin(cS + cellChunkSize, cEnd), numCells = cE - cS, c; 48143e9753d6SMatthew G. Knepley PetscInt fS = fStart + chunk * faceChunkSize, fE = PetscMin(fS + faceChunkSize, fEnd), numFaces = 0, face; 48153e9753d6SMatthew G. Knepley 48163e9753d6SMatthew G. Knepley /* Extract field coefficients */ 48173e9753d6SMatthew G. Knepley if (useFEM) { 48189566063dSJacob Faibussowitsch PetscCall(ISGetPointSubrange(chunkIS, cS, cE, cells)); 48199566063dSJacob Faibussowitsch PetscCall(DMPlexGetCellFields(dm, chunkIS, locX, locX_t, locA, &u, &u_t, &a)); 48209566063dSJacob Faibussowitsch PetscCall(DMGetWorkArray(dm, numCells * totDim, MPIU_SCALAR, &elemVec)); 48219566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(elemVec, numCells * totDim)); 48223e9753d6SMatthew G. Knepley } 48233e9753d6SMatthew G. Knepley if (useFVM) { 48249566063dSJacob Faibussowitsch PetscCall(DMPlexGetFaceFields(dm, fS, fE, locX, locX_t, faceGeometryFVM, cellGeometryFVM, locGrad, &numFaces, &uL, &uR)); 48259566063dSJacob Faibussowitsch PetscCall(DMPlexGetFaceGeometry(dm, fS, fE, faceGeometryFVM, cellGeometryFVM, &numFaces, &fgeom, &vol)); 48269566063dSJacob Faibussowitsch PetscCall(DMGetWorkArray(dm, numFaces * totDim, MPIU_SCALAR, &fluxL)); 48279566063dSJacob Faibussowitsch PetscCall(DMGetWorkArray(dm, numFaces * totDim, MPIU_SCALAR, &fluxR)); 48289566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(fluxL, numFaces * totDim)); 48299566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(fluxR, numFaces * totDim)); 48303e9753d6SMatthew G. Knepley } 48313e9753d6SMatthew G. Knepley /* TODO We will interlace both our field coefficients (u, u_t, uL, uR, etc.) and our output (elemVec, fL, fR). I think this works */ 48323e9753d6SMatthew G. Knepley /* Loop over fields */ 48333e9753d6SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 48343e9753d6SMatthew G. Knepley PetscObject obj; 48353e9753d6SMatthew G. Knepley PetscClassId id; 48363e9753d6SMatthew G. Knepley PetscBool fimp; 48373e9753d6SMatthew G. Knepley PetscInt numChunks, numBatches, batchSize, numBlocks, blockSize, Ne, Nr, offset; 48383e9753d6SMatthew G. Knepley 48396528b96dSMatthew G. Knepley key.field = f; 48409566063dSJacob Faibussowitsch PetscCall(PetscDSGetImplicit(ds, f, &fimp)); 48413e9753d6SMatthew G. Knepley if (isImplicit != fimp) continue; 48429566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(ds, f, &obj)); 48439566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 48443e9753d6SMatthew G. Knepley if (id == PETSCFE_CLASSID) { 48453e9753d6SMatthew G. Knepley PetscFE fe = (PetscFE)obj; 48463e9753d6SMatthew G. Knepley PetscFEGeom *geom = affineGeom ? affineGeom : geoms[f]; 48473e9753d6SMatthew G. Knepley PetscFEGeom *chunkGeom = NULL; 48483e9753d6SMatthew G. Knepley PetscQuadrature quad = affineQuad ? affineQuad : quads[f]; 48493e9753d6SMatthew G. Knepley PetscInt Nq, Nb; 48503e9753d6SMatthew G. Knepley 48519566063dSJacob Faibussowitsch PetscCall(PetscFEGetTileSizes(fe, NULL, &numBlocks, NULL, &numBatches)); 48529566063dSJacob Faibussowitsch PetscCall(PetscQuadratureGetData(quad, NULL, NULL, &Nq, NULL, NULL)); 48539566063dSJacob Faibussowitsch PetscCall(PetscFEGetDimension(fe, &Nb)); 48543e9753d6SMatthew G. Knepley blockSize = Nb; 48553e9753d6SMatthew G. Knepley batchSize = numBlocks * blockSize; 48569566063dSJacob Faibussowitsch PetscCall(PetscFESetTileSizes(fe, blockSize, numBlocks, batchSize, numBatches)); 48573e9753d6SMatthew G. Knepley numChunks = numCells / (numBatches * batchSize); 48583e9753d6SMatthew G. Knepley Ne = numChunks * numBatches * batchSize; 48593e9753d6SMatthew G. Knepley Nr = numCells % (numBatches * batchSize); 48603e9753d6SMatthew G. Knepley offset = numCells - Nr; 48613e9753d6SMatthew G. Knepley /* Integrate FE residual to get elemVec (need fields at quadrature points) */ 48623e9753d6SMatthew G. Knepley /* For FV, I think we use a P0 basis and the cell coefficients (for subdivided cells, we can tweak the basis tabulation to be the indicator function) */ 48639566063dSJacob Faibussowitsch PetscCall(PetscFEGeomGetChunk(geom, 0, offset, &chunkGeom)); 48649566063dSJacob Faibussowitsch PetscCall(PetscFEIntegrateResidual(ds, key, Ne, chunkGeom, u, u_t, dsAux, a, t, elemVec)); 48659566063dSJacob Faibussowitsch PetscCall(PetscFEGeomGetChunk(geom, offset, numCells, &chunkGeom)); 4866072f5ffdSStefano Zampini PetscCall(PetscFEIntegrateResidual(ds, key, Nr, chunkGeom, &u[offset * totDim], u_t ? &u_t[offset * totDim] : NULL, dsAux, a ? &a[offset * totDimAux] : NULL, t, &elemVec[offset * totDim])); 48679566063dSJacob Faibussowitsch PetscCall(PetscFEGeomRestoreChunk(geom, offset, numCells, &chunkGeom)); 48683e9753d6SMatthew G. Knepley } else if (id == PETSCFV_CLASSID) { 48693e9753d6SMatthew G. Knepley PetscFV fv = (PetscFV)obj; 48703e9753d6SMatthew G. Knepley 48713e9753d6SMatthew G. Knepley Ne = numFaces; 48723e9753d6SMatthew G. Knepley /* Riemann solve over faces (need fields at face centroids) */ 48733e9753d6SMatthew G. Knepley /* We need to evaluate FE fields at those coordinates */ 48749566063dSJacob Faibussowitsch PetscCall(PetscFVIntegrateRHSFunction(fv, ds, f, Ne, fgeom, vol, uL, uR, fluxL, fluxR)); 487563a3b9bcSJacob Faibussowitsch } else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, f); 48763e9753d6SMatthew G. Knepley } 48773e9753d6SMatthew G. Knepley /* Loop over domain */ 48783e9753d6SMatthew G. Knepley if (useFEM) { 48793e9753d6SMatthew G. Knepley /* Add elemVec to locX */ 48803e9753d6SMatthew G. Knepley for (c = cS; c < cE; ++c) { 48813e9753d6SMatthew G. Knepley const PetscInt cell = cells ? cells[c] : c; 48823e9753d6SMatthew G. Knepley const PetscInt cind = c - cStart; 48833e9753d6SMatthew G. Knepley 48849566063dSJacob Faibussowitsch if (mesh->printFEM > 1) PetscCall(DMPrintCellVector(cell, name, totDim, &elemVec[cind * totDim])); 48853e9753d6SMatthew G. Knepley if (ghostLabel) { 48863e9753d6SMatthew G. Knepley PetscInt ghostVal; 48873e9753d6SMatthew G. Knepley 48889566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(ghostLabel, cell, &ghostVal)); 48893e9753d6SMatthew G. Knepley if (ghostVal > 0) continue; 48903e9753d6SMatthew G. Knepley } 48919566063dSJacob Faibussowitsch PetscCall(DMPlexVecSetClosure(dm, section, locF, cell, &elemVec[cind * totDim], ADD_ALL_VALUES)); 48923e9753d6SMatthew G. Knepley } 48933e9753d6SMatthew G. Knepley } 48943e9753d6SMatthew G. Knepley if (useFVM) { 48953e9753d6SMatthew G. Knepley PetscScalar *fa; 48963e9753d6SMatthew G. Knepley PetscInt iface; 48973e9753d6SMatthew G. Knepley 48989566063dSJacob Faibussowitsch PetscCall(VecGetArray(locF, &fa)); 48993e9753d6SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 49003e9753d6SMatthew G. Knepley PetscFV fv; 49013e9753d6SMatthew G. Knepley PetscObject obj; 49023e9753d6SMatthew G. Knepley PetscClassId id; 49033e9753d6SMatthew G. Knepley PetscInt foff, pdim; 49043e9753d6SMatthew G. Knepley 49059566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(ds, f, &obj)); 49069566063dSJacob Faibussowitsch PetscCall(PetscDSGetFieldOffset(ds, f, &foff)); 49079566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 49083e9753d6SMatthew G. Knepley if (id != PETSCFV_CLASSID) continue; 49093e9753d6SMatthew G. Knepley fv = (PetscFV)obj; 49109566063dSJacob Faibussowitsch PetscCall(PetscFVGetNumComponents(fv, &pdim)); 49113e9753d6SMatthew G. Knepley /* Accumulate fluxes to cells */ 49123e9753d6SMatthew G. Knepley for (face = fS, iface = 0; face < fE; ++face) { 49133e9753d6SMatthew G. Knepley const PetscInt *scells; 49143e9753d6SMatthew G. Knepley PetscScalar *fL = NULL, *fR = NULL; 49153e9753d6SMatthew G. Knepley PetscInt ghost, d, nsupp, nchild; 49163e9753d6SMatthew G. Knepley 49179566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(ghostLabel, face, &ghost)); 49189566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dm, face, &nsupp)); 49199566063dSJacob Faibussowitsch PetscCall(DMPlexGetTreeChildren(dm, face, &nchild, NULL)); 49203e9753d6SMatthew G. Knepley if (ghost >= 0 || nsupp > 2 || nchild > 0) continue; 49219566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(dm, face, &scells)); 49229566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(ghostLabel, scells[0], &ghost)); 49239566063dSJacob Faibussowitsch if (ghost <= 0) PetscCall(DMPlexPointLocalFieldRef(dm, scells[0], f, fa, &fL)); 49249566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(ghostLabel, scells[1], &ghost)); 49259566063dSJacob Faibussowitsch if (ghost <= 0) PetscCall(DMPlexPointLocalFieldRef(dm, scells[1], f, fa, &fR)); 49263e9753d6SMatthew G. Knepley for (d = 0; d < pdim; ++d) { 49273e9753d6SMatthew G. Knepley if (fL) fL[d] -= fluxL[iface * totDim + foff + d]; 49283e9753d6SMatthew G. Knepley if (fR) fR[d] += fluxR[iface * totDim + foff + d]; 49293e9753d6SMatthew G. Knepley } 49303e9753d6SMatthew G. Knepley ++iface; 49313e9753d6SMatthew G. Knepley } 49323e9753d6SMatthew G. Knepley } 49339566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(locF, &fa)); 49343e9753d6SMatthew G. Knepley } 49353e9753d6SMatthew G. Knepley /* Handle time derivative */ 49363e9753d6SMatthew G. Knepley if (locX_t) { 49373e9753d6SMatthew G. Knepley PetscScalar *x_t, *fa; 49383e9753d6SMatthew G. Knepley 49399566063dSJacob Faibussowitsch PetscCall(VecGetArray(locF, &fa)); 49409566063dSJacob Faibussowitsch PetscCall(VecGetArray(locX_t, &x_t)); 49413e9753d6SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 49423e9753d6SMatthew G. Knepley PetscFV fv; 49433e9753d6SMatthew G. Knepley PetscObject obj; 49443e9753d6SMatthew G. Knepley PetscClassId id; 49453e9753d6SMatthew G. Knepley PetscInt pdim, d; 49463e9753d6SMatthew G. Knepley 49479566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(ds, f, &obj)); 49489566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 49493e9753d6SMatthew G. Knepley if (id != PETSCFV_CLASSID) continue; 49503e9753d6SMatthew G. Knepley fv = (PetscFV)obj; 49519566063dSJacob Faibussowitsch PetscCall(PetscFVGetNumComponents(fv, &pdim)); 49523e9753d6SMatthew G. Knepley for (c = cS; c < cE; ++c) { 49533e9753d6SMatthew G. Knepley const PetscInt cell = cells ? cells[c] : c; 49543e9753d6SMatthew G. Knepley PetscScalar *u_t, *r; 49553e9753d6SMatthew G. Knepley 49563e9753d6SMatthew G. Knepley if (ghostLabel) { 49573e9753d6SMatthew G. Knepley PetscInt ghostVal; 49583e9753d6SMatthew G. Knepley 49599566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(ghostLabel, cell, &ghostVal)); 49603e9753d6SMatthew G. Knepley if (ghostVal > 0) continue; 49613e9753d6SMatthew G. Knepley } 49629566063dSJacob Faibussowitsch PetscCall(DMPlexPointLocalFieldRead(dm, cell, f, x_t, &u_t)); 49639566063dSJacob Faibussowitsch PetscCall(DMPlexPointLocalFieldRef(dm, cell, f, fa, &r)); 49643e9753d6SMatthew G. Knepley for (d = 0; d < pdim; ++d) r[d] += u_t[d]; 49653e9753d6SMatthew G. Knepley } 49663e9753d6SMatthew G. Knepley } 49679566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(locX_t, &x_t)); 49689566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(locF, &fa)); 49693e9753d6SMatthew G. Knepley } 49703e9753d6SMatthew G. Knepley if (useFEM) { 49719566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreCellFields(dm, chunkIS, locX, locX_t, locA, &u, &u_t, &a)); 49729566063dSJacob Faibussowitsch PetscCall(DMRestoreWorkArray(dm, numCells * totDim, MPIU_SCALAR, &elemVec)); 49733e9753d6SMatthew G. Knepley } 49743e9753d6SMatthew G. Knepley if (useFVM) { 49759566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreFaceFields(dm, fS, fE, locX, locX_t, faceGeometryFVM, cellGeometryFVM, locGrad, &numFaces, &uL, &uR)); 49769566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreFaceGeometry(dm, fS, fE, faceGeometryFVM, cellGeometryFVM, &numFaces, &fgeom, &vol)); 49779566063dSJacob Faibussowitsch PetscCall(DMRestoreWorkArray(dm, numFaces * totDim, MPIU_SCALAR, &fluxL)); 49789566063dSJacob Faibussowitsch PetscCall(DMRestoreWorkArray(dm, numFaces * totDim, MPIU_SCALAR, &fluxR)); 49799566063dSJacob Faibussowitsch if (dmGrad) PetscCall(DMRestoreLocalVector(dmGrad, &locGrad)); 49803e9753d6SMatthew G. Knepley } 49813e9753d6SMatthew G. Knepley } 49829566063dSJacob Faibussowitsch if (useFEM) PetscCall(ISDestroy(&chunkIS)); 49839566063dSJacob Faibussowitsch PetscCall(ISRestorePointRange(cellIS, &cStart, &cEnd, &cells)); 49843e9753d6SMatthew G. Knepley 49853e9753d6SMatthew G. Knepley if (useFEM) { 49869566063dSJacob Faibussowitsch PetscCall(DMPlexComputeBdResidual_Internal(dm, locX, locX_t, t, locF, user)); 49873e9753d6SMatthew G. Knepley 49883e9753d6SMatthew G. Knepley if (maxDegree <= 1) { 49899566063dSJacob Faibussowitsch PetscCall(DMSNESRestoreFEGeom(coordField, cellIS, affineQuad, PETSC_FALSE, &affineGeom)); 49909566063dSJacob Faibussowitsch PetscCall(PetscQuadratureDestroy(&affineQuad)); 49913e9753d6SMatthew G. Knepley } else { 49923e9753d6SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 49939566063dSJacob Faibussowitsch PetscCall(DMSNESRestoreFEGeom(coordField, cellIS, quads[f], PETSC_FALSE, &geoms[f])); 49949566063dSJacob Faibussowitsch PetscCall(PetscQuadratureDestroy(&quads[f])); 49953e9753d6SMatthew G. Knepley } 49969566063dSJacob Faibussowitsch PetscCall(PetscFree2(quads, geoms)); 49973e9753d6SMatthew G. Knepley } 49983e9753d6SMatthew G. Knepley } 49993e9753d6SMatthew G. Knepley 50003e9753d6SMatthew G. Knepley /* FEM */ 50013e9753d6SMatthew G. Knepley /* 1: Get sizes from dm and dmAux */ 50023e9753d6SMatthew G. Knepley /* 2: Get geometric data */ 50033e9753d6SMatthew G. Knepley /* 3: Handle boundary values */ 50043e9753d6SMatthew G. Knepley /* 4: Loop over domain */ 50053e9753d6SMatthew G. Knepley /* Extract coefficients */ 50063e9753d6SMatthew G. Knepley /* Loop over fields */ 50073e9753d6SMatthew G. Knepley /* Set tiling for FE*/ 50083e9753d6SMatthew G. Knepley /* Integrate FE residual to get elemVec */ 50093e9753d6SMatthew G. Knepley /* Loop over subdomain */ 50103e9753d6SMatthew G. Knepley /* Loop over quad points */ 50113e9753d6SMatthew G. Knepley /* Transform coords to real space */ 50123e9753d6SMatthew G. Knepley /* Evaluate field and aux fields at point */ 50133e9753d6SMatthew G. Knepley /* Evaluate residual at point */ 50143e9753d6SMatthew G. Knepley /* Transform residual to real space */ 50153e9753d6SMatthew G. Knepley /* Add residual to elemVec */ 50163e9753d6SMatthew G. Knepley /* Loop over domain */ 50173e9753d6SMatthew G. Knepley /* Add elemVec to locX */ 50183e9753d6SMatthew G. Knepley 50193e9753d6SMatthew G. Knepley /* FVM */ 50203e9753d6SMatthew G. Knepley /* Get geometric data */ 50213e9753d6SMatthew G. Knepley /* If using gradients */ 50223e9753d6SMatthew G. Knepley /* Compute gradient data */ 50233e9753d6SMatthew G. Knepley /* Loop over domain faces */ 50243e9753d6SMatthew G. Knepley /* Count computational faces */ 50253e9753d6SMatthew G. Knepley /* Reconstruct cell gradient */ 50263e9753d6SMatthew G. Knepley /* Loop over domain cells */ 50273e9753d6SMatthew G. Knepley /* Limit cell gradients */ 50283e9753d6SMatthew G. Knepley /* Handle boundary values */ 50293e9753d6SMatthew G. Knepley /* Loop over domain faces */ 50303e9753d6SMatthew G. Knepley /* Read out field, centroid, normal, volume for each side of face */ 50313e9753d6SMatthew G. Knepley /* Riemann solve over faces */ 50323e9753d6SMatthew G. Knepley /* Loop over domain faces */ 50333e9753d6SMatthew G. Knepley /* Accumulate fluxes to cells */ 50343e9753d6SMatthew G. Knepley /* TODO Change printFEM to printDisc here */ 50353e9753d6SMatthew G. Knepley if (mesh->printFEM) { 50363e9753d6SMatthew G. Knepley Vec locFbc; 50373e9753d6SMatthew G. Knepley PetscInt pStart, pEnd, p, maxDof; 50383e9753d6SMatthew G. Knepley PetscScalar *zeroes; 50393e9753d6SMatthew G. Knepley 50409566063dSJacob Faibussowitsch PetscCall(VecDuplicate(locF, &locFbc)); 50419566063dSJacob Faibussowitsch PetscCall(VecCopy(locF, locFbc)); 50429566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(section, &pStart, &pEnd)); 50439566063dSJacob Faibussowitsch PetscCall(PetscSectionGetMaxDof(section, &maxDof)); 50449566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(maxDof, &zeroes)); 504548a46eb9SPierre Jolivet for (p = pStart; p < pEnd; p++) PetscCall(VecSetValuesSection(locFbc, section, p, zeroes, INSERT_BC_VALUES)); 50469566063dSJacob Faibussowitsch PetscCall(PetscFree(zeroes)); 50479566063dSJacob Faibussowitsch PetscCall(DMPrintLocalVec(dm, name, mesh->printTol, locFbc)); 50489566063dSJacob Faibussowitsch PetscCall(VecDestroy(&locFbc)); 50493e9753d6SMatthew G. Knepley } 50509566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DMPLEX_ResidualFEM, dm, 0, 0, 0)); 50513ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 50523e9753d6SMatthew G. Knepley } 50533e9753d6SMatthew G. Knepley 50546528b96dSMatthew G. Knepley /* 50556528b96dSMatthew G. Knepley 1) Allow multiple kernels for BdResidual for hybrid DS 50566528b96dSMatthew G. Knepley 50576528b96dSMatthew G. Knepley DONE 2) Get out dsAux for either side at the same time as cohesive cell dsAux 50586528b96dSMatthew G. Knepley 50596528b96dSMatthew G. Knepley DONE 3) Change DMGetCellFields() to get different aux data a[] for each side 50606528b96dSMatthew G. Knepley - I think I just need to replace a[] with the closure from each face 50616528b96dSMatthew G. Knepley 50626528b96dSMatthew G. Knepley 4) Run both kernels for each non-hybrid field with correct dsAux, and then hybrid field as before 50636528b96dSMatthew G. Knepley */ 5064d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeResidual_Hybrid_Internal(DM dm, PetscFormKey key[], IS cellIS, PetscReal time, Vec locX, Vec locX_t, PetscReal t, Vec locF, void *user) 5065d71ae5a4SJacob Faibussowitsch { 50663e9753d6SMatthew G. Knepley DM_Plex *mesh = (DM_Plex *)dm->data; 50673e9753d6SMatthew G. Knepley const char *name = "Hybrid Residual"; 506804c51a94SMatthew G. Knepley DM dmAux[3] = {NULL, NULL, NULL}; 50693e9753d6SMatthew G. Knepley DMLabel ghostLabel = NULL; 50706528b96dSMatthew G. Knepley PetscDS ds = NULL; 507107218a29SMatthew G. Knepley PetscDS dsIn = NULL; 50726528b96dSMatthew G. Knepley PetscDS dsAux[3] = {NULL, NULL, NULL}; 507304c51a94SMatthew G. Knepley Vec locA[3] = {NULL, NULL, NULL}; 507407218a29SMatthew G. Knepley DM dmScale[3] = {NULL, NULL, NULL}; 507507218a29SMatthew G. Knepley PetscDS dsScale[3] = {NULL, NULL, NULL}; 507607218a29SMatthew G. Knepley Vec locS[3] = {NULL, NULL, NULL}; 50773e9753d6SMatthew G. Knepley PetscSection section = NULL; 50783e9753d6SMatthew G. Knepley DMField coordField = NULL; 507907218a29SMatthew G. Knepley PetscScalar *a[3] = {NULL, NULL, NULL}; 508007218a29SMatthew G. Knepley PetscScalar *s[3] = {NULL, NULL, NULL}; 5081b2ab40e6SMatthew G. Knepley PetscScalar *u = NULL, *u_t; 508207218a29SMatthew G. Knepley PetscScalar *elemVecNeg, *elemVecPos, *elemVecCoh; 50833e9753d6SMatthew G. Knepley IS chunkIS; 50843e9753d6SMatthew G. Knepley const PetscInt *cells; 50853e9753d6SMatthew G. Knepley PetscInt *faces; 50863e9753d6SMatthew G. Knepley PetscInt cStart, cEnd, numCells; 50873e2b0218SMatthew G. Knepley PetscInt Nf, f, totDim, totDimIn, totDimAux[3], totDimScale[3], numChunks, cellChunkSize, chunk; 50883e9753d6SMatthew G. Knepley PetscInt maxDegree = PETSC_MAX_INT; 50893e9753d6SMatthew G. Knepley PetscQuadrature affineQuad = NULL, *quads = NULL; 50903e9753d6SMatthew G. Knepley PetscFEGeom *affineGeom = NULL, **geoms = NULL; 50913e9753d6SMatthew G. Knepley 50923e9753d6SMatthew G. Knepley PetscFunctionBegin; 50933ba16761SJacob Faibussowitsch if (!cellIS) PetscFunctionReturn(PETSC_SUCCESS); 5094437e83fbSMatthew G. Knepley PetscCall(ISGetPointRange(cellIS, &cStart, &cEnd, &cells)); 5095437e83fbSMatthew G. Knepley PetscCall(ISGetLocalSize(cellIS, &numCells)); 50963ba16761SJacob Faibussowitsch if (cStart >= cEnd) PetscFunctionReturn(PETSC_SUCCESS); 50975fedec97SMatthew G. Knepley if ((key[0].label == key[1].label) && (key[0].value == key[1].value) && (key[0].part == key[1].part)) { 50985fedec97SMatthew G. Knepley const char *name; 50999566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)key[0].label, &name)); 510063a3b9bcSJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Form keys for each side of a cohesive surface must be different (%s, %" PetscInt_FMT ", %" PetscInt_FMT ")", name, key[0].value, key[0].part); 51015fedec97SMatthew G. Knepley } 51029566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DMPLEX_ResidualFEM, dm, 0, 0, 0)); 51033e9753d6SMatthew G. Knepley /* TODO The places where we have to use isFE are probably the member functions for the PetscDisc class */ 51043e9753d6SMatthew G. Knepley /* FEM */ 51053e9753d6SMatthew G. Knepley /* 1: Get sizes from dm and dmAux */ 51069566063dSJacob Faibussowitsch PetscCall(DMGetSection(dm, §ion)); 51079566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, "ghost", &ghostLabel)); 510807218a29SMatthew G. Knepley PetscCall(DMGetCellDS(dm, cells ? cells[cStart] : cStart, &ds, &dsIn)); 51099566063dSJacob Faibussowitsch PetscCall(PetscDSGetNumFields(ds, &Nf)); 51109566063dSJacob Faibussowitsch PetscCall(PetscDSGetTotalDimension(ds, &totDim)); 511107218a29SMatthew G. Knepley PetscCall(PetscDSGetTotalDimension(dsIn, &totDimIn)); 51129566063dSJacob Faibussowitsch PetscCall(DMGetAuxiliaryVec(dm, key[2].label, key[2].value, key[2].part, &locA[2])); 511304c51a94SMatthew G. Knepley if (locA[2]) { 51141059d808SMatthew G. Knepley const PetscInt cellStart = cells ? cells[cStart] : cStart; 51151059d808SMatthew G. Knepley 51169566063dSJacob Faibussowitsch PetscCall(VecGetDM(locA[2], &dmAux[2])); 511707218a29SMatthew G. Knepley PetscCall(DMGetCellDS(dmAux[2], cellStart, &dsAux[2], NULL)); 51189566063dSJacob Faibussowitsch PetscCall(PetscDSGetTotalDimension(dsAux[2], &totDimAux[2])); 51196528b96dSMatthew G. Knepley { 51206528b96dSMatthew G. Knepley const PetscInt *cone; 51216528b96dSMatthew G. Knepley PetscInt c; 51226528b96dSMatthew G. Knepley 51231059d808SMatthew G. Knepley PetscCall(DMPlexGetCone(dm, cellStart, &cone)); 51246528b96dSMatthew G. Knepley for (c = 0; c < 2; ++c) { 51256528b96dSMatthew G. Knepley const PetscInt *support; 51266528b96dSMatthew G. Knepley PetscInt ssize, s; 51276528b96dSMatthew G. Knepley 51289566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(dm, cone[c], &support)); 51299566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dm, cone[c], &ssize)); 51301059d808SMatthew G. Knepley PetscCheck(ssize == 2, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Face %" PetscInt_FMT " from cell %" PetscInt_FMT " has support size %" PetscInt_FMT " != 2", cone[c], cellStart, ssize); 51311059d808SMatthew G. Knepley if (support[0] == cellStart) s = 1; 51321059d808SMatthew G. Knepley else if (support[1] == cellStart) s = 0; 51331059d808SMatthew G. Knepley else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Face %" PetscInt_FMT " does not have cell %" PetscInt_FMT " in its support", cone[c], cellStart); 51349566063dSJacob Faibussowitsch PetscCall(DMGetAuxiliaryVec(dm, key[c].label, key[c].value, key[c].part, &locA[c])); 5135c75bfeddSPierre Jolivet PetscCheck(locA[c], PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Must have auxiliary vector for (%p, %" PetscInt_FMT ", %" PetscInt_FMT ")", (void *)key[c].label, key[c].value, key[c].part); 51369566063dSJacob Faibussowitsch if (locA[c]) PetscCall(VecGetDM(locA[c], &dmAux[c])); 5137ad540459SPierre Jolivet else dmAux[c] = dmAux[2]; 513807218a29SMatthew G. Knepley PetscCall(DMGetCellDS(dmAux[c], support[s], &dsAux[c], NULL)); 51399566063dSJacob Faibussowitsch PetscCall(PetscDSGetTotalDimension(dsAux[c], &totDimAux[c])); 51406528b96dSMatthew G. Knepley } 51416528b96dSMatthew G. Knepley } 51423e9753d6SMatthew G. Knepley } 514307218a29SMatthew G. Knepley /* Handle mass matrix scaling 514407218a29SMatthew G. Knepley The field in key[2] is the field to be scaled, and the scaling field is the first in the dsScale */ 514507218a29SMatthew G. Knepley PetscCall(DMGetAuxiliaryVec(dm, key[2].label, -key[2].value, key[2].part, &locS[2])); 514607218a29SMatthew G. Knepley if (locS[2]) { 51473e2b0218SMatthew G. Knepley const PetscInt cellStart = cells ? cells[cStart] : cStart; 514807218a29SMatthew G. Knepley PetscInt Nb, Nbs; 514907218a29SMatthew G. Knepley 515007218a29SMatthew G. Knepley PetscCall(VecGetDM(locS[2], &dmScale[2])); 51513e2b0218SMatthew G. Knepley PetscCall(DMGetCellDS(dmScale[2], cellStart, &dsScale[2], NULL)); 51523e2b0218SMatthew G. Knepley PetscCall(PetscDSGetTotalDimension(dsScale[2], &totDimScale[2])); 515307218a29SMatthew G. Knepley // BRAD: This is not set correctly 515407218a29SMatthew G. Knepley key[2].field = 2; 515507218a29SMatthew G. Knepley PetscCall(PetscDSGetFieldSize(ds, key[2].field, &Nb)); 515607218a29SMatthew G. Knepley PetscCall(PetscDSGetFieldSize(dsScale[2], 0, &Nbs)); 515707218a29SMatthew G. Knepley PetscCheck(Nb == Nbs, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "Field %" PetscInt_FMT " of size %" PetscInt_FMT " cannot be scaled by field of size %" PetscInt_FMT, key[2].field, Nb, Nbs); 51583e2b0218SMatthew G. Knepley { 51593e2b0218SMatthew G. Knepley const PetscInt *cone; 51603e2b0218SMatthew G. Knepley PetscInt c; 51613e2b0218SMatthew G. Knepley 51623e2b0218SMatthew G. Knepley locS[1] = locS[0] = locS[2]; 51633e2b0218SMatthew G. Knepley dmScale[1] = dmScale[0] = dmScale[2]; 51643e2b0218SMatthew G. Knepley PetscCall(DMPlexGetCone(dm, cellStart, &cone)); 51653e2b0218SMatthew G. Knepley for (c = 0; c < 2; ++c) { 51663e2b0218SMatthew G. Knepley const PetscInt *support; 51673e2b0218SMatthew G. Knepley PetscInt ssize, s; 51683e2b0218SMatthew G. Knepley 51693e2b0218SMatthew G. Knepley PetscCall(DMPlexGetSupport(dm, cone[c], &support)); 51703e2b0218SMatthew G. Knepley PetscCall(DMPlexGetSupportSize(dm, cone[c], &ssize)); 51713e2b0218SMatthew G. Knepley PetscCheck(ssize == 2, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Face %" PetscInt_FMT " from cell %" PetscInt_FMT " has support size %" PetscInt_FMT " != 2", cone[c], cellStart, ssize); 51723e2b0218SMatthew G. Knepley if (support[0] == cellStart) s = 1; 51733e2b0218SMatthew G. Knepley else if (support[1] == cellStart) s = 0; 51743e2b0218SMatthew G. Knepley else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Face %" PetscInt_FMT " does not have cell %" PetscInt_FMT " in its support", cone[c], cellStart); 51753e2b0218SMatthew G. Knepley PetscCall(DMGetCellDS(dmScale[c], support[s], &dsScale[c], NULL)); 51763e2b0218SMatthew G. Knepley PetscCall(PetscDSGetTotalDimension(dsScale[c], &totDimScale[c])); 51773e2b0218SMatthew G. Knepley } 51783e2b0218SMatthew G. Knepley } 517907218a29SMatthew G. Knepley } 51803e9753d6SMatthew G. Knepley /* 2: Setup geometric data */ 51819566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateField(dm, &coordField)); 51829566063dSJacob Faibussowitsch PetscCall(DMFieldGetDegree(coordField, cellIS, NULL, &maxDegree)); 51833e9753d6SMatthew G. Knepley if (maxDegree > 1) { 51849566063dSJacob Faibussowitsch PetscCall(PetscCalloc2(Nf, &quads, Nf, &geoms)); 51853e9753d6SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 51863e9753d6SMatthew G. Knepley PetscFE fe; 51873e9753d6SMatthew G. Knepley 51889566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(ds, f, (PetscObject *)&fe)); 51893e9753d6SMatthew G. Knepley if (fe) { 51909566063dSJacob Faibussowitsch PetscCall(PetscFEGetQuadrature(fe, &quads[f])); 51919566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)quads[f])); 51923e9753d6SMatthew G. Knepley } 51933e9753d6SMatthew G. Knepley } 51943e9753d6SMatthew G. Knepley } 51953e9753d6SMatthew G. Knepley /* Loop over chunks */ 51963e9753d6SMatthew G. Knepley cellChunkSize = numCells; 51973e9753d6SMatthew G. Knepley numChunks = !numCells ? 0 : PetscCeilReal(((PetscReal)numCells) / cellChunkSize); 519807218a29SMatthew G. Knepley PetscCall(PetscCalloc1(2 * cellChunkSize, &faces)); 519907218a29SMatthew G. Knepley PetscCall(ISCreateGeneral(PETSC_COMM_SELF, 2 * cellChunkSize, faces, PETSC_USE_POINTER, &chunkIS)); 52003e9753d6SMatthew G. Knepley /* Extract field coefficients */ 52013e9753d6SMatthew G. Knepley /* NOTE This needs the end cap faces to have identical orientations */ 520207218a29SMatthew G. Knepley PetscCall(DMPlexGetHybridCellFields(dm, cellIS, locX, locX_t, locA[2], &u, &u_t, &a[2])); 520307218a29SMatthew G. Knepley PetscCall(DMPlexGetHybridFields(dm, dmAux, dsAux, cellIS, locA, PETSC_TRUE, a)); 52043e2b0218SMatthew G. Knepley PetscCall(DMPlexGetHybridFields(dm, dmScale, dsScale, cellIS, locS, PETSC_TRUE, s)); 520507218a29SMatthew G. Knepley PetscCall(DMGetWorkArray(dm, cellChunkSize * totDim, MPIU_SCALAR, &elemVecNeg)); 520607218a29SMatthew G. Knepley PetscCall(DMGetWorkArray(dm, cellChunkSize * totDim, MPIU_SCALAR, &elemVecPos)); 520707218a29SMatthew G. Knepley PetscCall(DMGetWorkArray(dm, cellChunkSize * totDim, MPIU_SCALAR, &elemVecCoh)); 52083e9753d6SMatthew G. Knepley for (chunk = 0; chunk < numChunks; ++chunk) { 52093e9753d6SMatthew G. Knepley PetscInt cS = cStart + chunk * cellChunkSize, cE = PetscMin(cS + cellChunkSize, cEnd), numCells = cE - cS, c; 52103e9753d6SMatthew G. Knepley 521107218a29SMatthew G. Knepley PetscCall(PetscArrayzero(elemVecNeg, cellChunkSize * totDim)); 521207218a29SMatthew G. Knepley PetscCall(PetscArrayzero(elemVecPos, cellChunkSize * totDim)); 521307218a29SMatthew G. Knepley PetscCall(PetscArrayzero(elemVecCoh, cellChunkSize * totDim)); 52143e9753d6SMatthew G. Knepley /* Get faces */ 52153e9753d6SMatthew G. Knepley for (c = cS; c < cE; ++c) { 52163e9753d6SMatthew G. Knepley const PetscInt cell = cells ? cells[c] : c; 52173e9753d6SMatthew G. Knepley const PetscInt *cone; 52189566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, cell, &cone)); 521907218a29SMatthew G. Knepley faces[(c - cS) * 2 + 0] = cone[0]; 522007218a29SMatthew G. Knepley faces[(c - cS) * 2 + 1] = cone[1]; 52213e9753d6SMatthew G. Knepley } 522207218a29SMatthew G. Knepley PetscCall(ISGeneralSetIndices(chunkIS, 2 * cellChunkSize, faces, PETSC_USE_POINTER)); 52233e9753d6SMatthew G. Knepley /* Get geometric data */ 52243e9753d6SMatthew G. Knepley if (maxDegree <= 1) { 52259566063dSJacob Faibussowitsch if (!affineQuad) PetscCall(DMFieldCreateDefaultQuadrature(coordField, chunkIS, &affineQuad)); 52269566063dSJacob Faibussowitsch if (affineQuad) PetscCall(DMSNESGetFEGeom(coordField, chunkIS, affineQuad, PETSC_TRUE, &affineGeom)); 52273e9753d6SMatthew G. Knepley } else { 52283e9753d6SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 52299566063dSJacob Faibussowitsch if (quads[f]) PetscCall(DMSNESGetFEGeom(coordField, chunkIS, quads[f], PETSC_TRUE, &geoms[f])); 52303e9753d6SMatthew G. Knepley } 52313e9753d6SMatthew G. Knepley } 52323e9753d6SMatthew G. Knepley /* Loop over fields */ 52333e9753d6SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 52343e9753d6SMatthew G. Knepley PetscFE fe; 52353e9753d6SMatthew G. Knepley PetscFEGeom *geom = affineGeom ? affineGeom : geoms[f]; 5236148442b3SMatthew G. Knepley PetscFEGeom *chunkGeom = NULL, *remGeom = NULL; 52373e9753d6SMatthew G. Knepley PetscQuadrature quad = affineQuad ? affineQuad : quads[f]; 52383e9753d6SMatthew G. Knepley PetscInt numChunks, numBatches, batchSize, numBlocks, blockSize, Ne, Nr, offset, Nq, Nb; 52395fedec97SMatthew G. Knepley PetscBool isCohesiveField; 52403e9753d6SMatthew G. Knepley 52419566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(ds, f, (PetscObject *)&fe)); 52423e9753d6SMatthew G. Knepley if (!fe) continue; 52439566063dSJacob Faibussowitsch PetscCall(PetscFEGetTileSizes(fe, NULL, &numBlocks, NULL, &numBatches)); 52449566063dSJacob Faibussowitsch PetscCall(PetscQuadratureGetData(quad, NULL, NULL, &Nq, NULL, NULL)); 52459566063dSJacob Faibussowitsch PetscCall(PetscFEGetDimension(fe, &Nb)); 52463e9753d6SMatthew G. Knepley blockSize = Nb; 52473e9753d6SMatthew G. Knepley batchSize = numBlocks * blockSize; 52489566063dSJacob Faibussowitsch PetscCall(PetscFESetTileSizes(fe, blockSize, numBlocks, batchSize, numBatches)); 52493e9753d6SMatthew G. Knepley numChunks = numCells / (numBatches * batchSize); 52503e9753d6SMatthew G. Knepley Ne = numChunks * numBatches * batchSize; 52513e9753d6SMatthew G. Knepley Nr = numCells % (numBatches * batchSize); 52523e9753d6SMatthew G. Knepley offset = numCells - Nr; 525307218a29SMatthew G. Knepley PetscCall(PetscFEGeomGetChunk(geom, 0, offset * 2, &chunkGeom)); 525407218a29SMatthew G. Knepley PetscCall(PetscFEGeomGetChunk(geom, offset * 2, numCells * 2, &remGeom)); 52559566063dSJacob Faibussowitsch PetscCall(PetscDSGetCohesive(ds, f, &isCohesiveField)); 52565fedec97SMatthew G. Knepley chunkGeom->isCohesive = remGeom->isCohesive = PETSC_TRUE; 52576528b96dSMatthew G. Knepley key[0].field = f; 52586528b96dSMatthew G. Knepley key[1].field = f; 52595fedec97SMatthew G. Knepley key[2].field = f; 526007218a29SMatthew G. Knepley PetscCall(PetscFEIntegrateHybridResidual(ds, dsIn, key[0], 0, Ne, chunkGeom, u, u_t, dsAux[0], a[0], t, elemVecNeg)); 526107218a29SMatthew G. Knepley PetscCall(PetscFEIntegrateHybridResidual(ds, dsIn, key[0], 0, Nr, remGeom, &u[offset * totDimIn], u_t ? &u_t[offset * totDimIn] : NULL, dsAux[0], &a[0][offset * totDimAux[0]], t, &elemVecNeg[offset * totDim])); 526207218a29SMatthew G. Knepley PetscCall(PetscFEIntegrateHybridResidual(ds, dsIn, key[1], 1, Ne, chunkGeom, u, u_t, dsAux[1], a[1], t, elemVecPos)); 526307218a29SMatthew G. Knepley PetscCall(PetscFEIntegrateHybridResidual(ds, dsIn, key[1], 1, Nr, remGeom, &u[offset * totDimIn], u_t ? &u_t[offset * totDimIn] : NULL, dsAux[1], &a[1][offset * totDimAux[1]], t, &elemVecPos[offset * totDim])); 526407218a29SMatthew G. Knepley PetscCall(PetscFEIntegrateHybridResidual(ds, dsIn, key[2], 2, Ne, chunkGeom, u, u_t, dsAux[2], a[2], t, elemVecCoh)); 526507218a29SMatthew G. Knepley PetscCall(PetscFEIntegrateHybridResidual(ds, dsIn, key[2], 2, Nr, remGeom, &u[offset * totDimIn], u_t ? &u_t[offset * totDimIn] : NULL, dsAux[2], &a[2][offset * totDimAux[2]], t, &elemVecCoh[offset * totDim])); 52669566063dSJacob Faibussowitsch PetscCall(PetscFEGeomRestoreChunk(geom, offset, numCells, &remGeom)); 52679566063dSJacob Faibussowitsch PetscCall(PetscFEGeomRestoreChunk(geom, 0, offset, &chunkGeom)); 52683e9753d6SMatthew G. Knepley } 52693e9753d6SMatthew G. Knepley /* Add elemVec to locX */ 52703e9753d6SMatthew G. Knepley for (c = cS; c < cE; ++c) { 52713e9753d6SMatthew G. Knepley const PetscInt cell = cells ? cells[c] : c; 52723e9753d6SMatthew G. Knepley const PetscInt cind = c - cStart; 527307218a29SMatthew G. Knepley PetscInt i; 52743e9753d6SMatthew G. Knepley 527507218a29SMatthew G. Knepley /* Scale element values */ 527607218a29SMatthew G. Knepley if (locS[0]) { 52773e2b0218SMatthew G. Knepley PetscInt Nb, off = cind * totDim, soff = cind * totDimScale[0]; 527807218a29SMatthew G. Knepley PetscBool cohesive; 527907218a29SMatthew G. Knepley 528007218a29SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 528107218a29SMatthew G. Knepley PetscCall(PetscDSGetFieldSize(ds, f, &Nb)); 528207218a29SMatthew G. Knepley PetscCall(PetscDSGetCohesive(ds, f, &cohesive)); 528307218a29SMatthew G. Knepley if (f == key[2].field) { 528407218a29SMatthew G. Knepley PetscCheck(cohesive, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Scaling should not happen for face fields"); 528507218a29SMatthew G. Knepley // No cohesive scaling field is currently input 528607218a29SMatthew G. Knepley for (i = 0; i < Nb; ++i) elemVecCoh[off + i] += s[0][soff + i] * elemVecNeg[off + i] + s[1][soff + i] * elemVecPos[off + i]; 528707218a29SMatthew G. Knepley off += Nb; 528807218a29SMatthew G. Knepley } else { 528907218a29SMatthew G. Knepley const PetscInt N = cohesive ? Nb : Nb * 2; 529007218a29SMatthew G. Knepley 529107218a29SMatthew G. Knepley for (i = 0; i < N; ++i) elemVecCoh[off + i] += elemVecNeg[off + i] + elemVecPos[off + i]; 529207218a29SMatthew G. Knepley off += N; 529307218a29SMatthew G. Knepley } 529407218a29SMatthew G. Knepley } 529507218a29SMatthew G. Knepley } else { 529607218a29SMatthew G. Knepley for (i = cind * totDim; i < (cind + 1) * totDim; ++i) elemVecCoh[i] += elemVecNeg[i] + elemVecPos[i]; 529707218a29SMatthew G. Knepley } 529807218a29SMatthew G. Knepley if (mesh->printFEM > 1) PetscCall(DMPrintCellVector(cell, name, totDim, &elemVecCoh[cind * totDim])); 52993e9753d6SMatthew G. Knepley if (ghostLabel) { 53003e9753d6SMatthew G. Knepley PetscInt ghostVal; 53013e9753d6SMatthew G. Knepley 53029566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(ghostLabel, cell, &ghostVal)); 53033e9753d6SMatthew G. Knepley if (ghostVal > 0) continue; 53043e9753d6SMatthew G. Knepley } 530507218a29SMatthew G. Knepley PetscCall(DMPlexVecSetClosure(dm, section, locF, cell, &elemVecCoh[cind * totDim], ADD_ALL_VALUES)); 53063e9753d6SMatthew G. Knepley } 53073e9753d6SMatthew G. Knepley } 53089566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreCellFields(dm, cellIS, locX, locX_t, locA[2], &u, &u_t, &a[2])); 530907218a29SMatthew G. Knepley PetscCall(DMPlexRestoreHybridFields(dm, dmAux, dsAux, cellIS, locA, PETSC_TRUE, a)); 53103e2b0218SMatthew G. Knepley PetscCall(DMPlexRestoreHybridFields(dm, dmScale, dsScale, cellIS, locS, PETSC_TRUE, s)); 531107218a29SMatthew G. Knepley PetscCall(DMRestoreWorkArray(dm, numCells * totDim, MPIU_SCALAR, &elemVecNeg)); 531207218a29SMatthew G. Knepley PetscCall(DMRestoreWorkArray(dm, numCells * totDim, MPIU_SCALAR, &elemVecPos)); 531307218a29SMatthew G. Knepley PetscCall(DMRestoreWorkArray(dm, numCells * totDim, MPIU_SCALAR, &elemVecCoh)); 53149566063dSJacob Faibussowitsch PetscCall(PetscFree(faces)); 53159566063dSJacob Faibussowitsch PetscCall(ISDestroy(&chunkIS)); 53169566063dSJacob Faibussowitsch PetscCall(ISRestorePointRange(cellIS, &cStart, &cEnd, &cells)); 53173e9753d6SMatthew G. Knepley if (maxDegree <= 1) { 53189566063dSJacob Faibussowitsch PetscCall(DMSNESRestoreFEGeom(coordField, cellIS, affineQuad, PETSC_FALSE, &affineGeom)); 53199566063dSJacob Faibussowitsch PetscCall(PetscQuadratureDestroy(&affineQuad)); 53203e9753d6SMatthew G. Knepley } else { 53213e9753d6SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 53229566063dSJacob Faibussowitsch if (geoms) PetscCall(DMSNESRestoreFEGeom(coordField, cellIS, quads[f], PETSC_FALSE, &geoms[f])); 53239566063dSJacob Faibussowitsch if (quads) PetscCall(PetscQuadratureDestroy(&quads[f])); 53243e9753d6SMatthew G. Knepley } 53259566063dSJacob Faibussowitsch PetscCall(PetscFree2(quads, geoms)); 53263e9753d6SMatthew G. Knepley } 532785cc2951SMatthew G. Knepley if (mesh->printFEM) { 532885cc2951SMatthew G. Knepley Vec locFbc; 532985cc2951SMatthew G. Knepley PetscInt pStart, pEnd, p, maxDof; 533085cc2951SMatthew G. Knepley PetscScalar *zeroes; 533185cc2951SMatthew G. Knepley 533285cc2951SMatthew G. Knepley PetscCall(VecDuplicate(locF, &locFbc)); 533385cc2951SMatthew G. Knepley PetscCall(VecCopy(locF, locFbc)); 533485cc2951SMatthew G. Knepley PetscCall(PetscSectionGetChart(section, &pStart, &pEnd)); 533585cc2951SMatthew G. Knepley PetscCall(PetscSectionGetMaxDof(section, &maxDof)); 533685cc2951SMatthew G. Knepley PetscCall(PetscCalloc1(maxDof, &zeroes)); 533785cc2951SMatthew G. Knepley for (p = pStart; p < pEnd; p++) PetscCall(VecSetValuesSection(locFbc, section, p, zeroes, INSERT_BC_VALUES)); 533885cc2951SMatthew G. Knepley PetscCall(PetscFree(zeroes)); 533985cc2951SMatthew G. Knepley PetscCall(DMPrintLocalVec(dm, name, mesh->printTol, locFbc)); 534085cc2951SMatthew G. Knepley PetscCall(VecDestroy(&locFbc)); 534185cc2951SMatthew G. Knepley } 53429566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DMPLEX_ResidualFEM, dm, 0, 0, 0)); 53433ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 53443e9753d6SMatthew G. Knepley } 53453e9753d6SMatthew G. Knepley 5346*a4e35b19SJacob Faibussowitsch static PetscErrorCode DMPlexComputeBdJacobian_Single_Internal(DM dm, PetscReal t, PetscWeakForm wf, DMLabel label, PetscInt numValues, const PetscInt values[], PetscInt fieldI, Vec locX, Vec locX_t, PetscReal X_tShift, Mat Jac, Mat JacP, DMField coordField, IS facetIS) 5347d71ae5a4SJacob Faibussowitsch { 53483e9753d6SMatthew G. Knepley DM_Plex *mesh = (DM_Plex *)dm->data; 53493e9753d6SMatthew G. Knepley DM plex = NULL, plexA = NULL, tdm; 53503e9753d6SMatthew G. Knepley DMEnclosureType encAux; 53513e9753d6SMatthew G. Knepley PetscDS prob, probAux = NULL; 53523e9753d6SMatthew G. Knepley PetscSection section, sectionAux = NULL; 5353e432b41dSStefano Zampini PetscSection globalSection; 53543e9753d6SMatthew G. Knepley Vec locA = NULL, tv; 53553e9753d6SMatthew G. Knepley PetscScalar *u = NULL, *u_t = NULL, *a = NULL, *elemMat = NULL; 53563e9753d6SMatthew G. Knepley PetscInt v; 53573e9753d6SMatthew G. Knepley PetscInt Nf, totDim, totDimAux = 0; 5358e432b41dSStefano Zampini PetscBool transform; 53593e9753d6SMatthew G. Knepley 53603e9753d6SMatthew G. Knepley PetscFunctionBegin; 53619566063dSJacob Faibussowitsch PetscCall(DMConvert(dm, DMPLEX, &plex)); 53629566063dSJacob Faibussowitsch PetscCall(DMHasBasisTransform(dm, &transform)); 53639566063dSJacob Faibussowitsch PetscCall(DMGetBasisTransformDM_Internal(dm, &tdm)); 53649566063dSJacob Faibussowitsch PetscCall(DMGetBasisTransformVec_Internal(dm, &tv)); 53659566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, §ion)); 53669566063dSJacob Faibussowitsch PetscCall(DMGetDS(dm, &prob)); 53679566063dSJacob Faibussowitsch PetscCall(PetscDSGetNumFields(prob, &Nf)); 53689566063dSJacob Faibussowitsch PetscCall(PetscDSGetTotalDimension(prob, &totDim)); 53699566063dSJacob Faibussowitsch PetscCall(DMGetAuxiliaryVec(dm, label, values[0], 0, &locA)); 53703e9753d6SMatthew G. Knepley if (locA) { 53713e9753d6SMatthew G. Knepley DM dmAux; 53723e9753d6SMatthew G. Knepley 53739566063dSJacob Faibussowitsch PetscCall(VecGetDM(locA, &dmAux)); 53749566063dSJacob Faibussowitsch PetscCall(DMGetEnclosureRelation(dmAux, dm, &encAux)); 53759566063dSJacob Faibussowitsch PetscCall(DMConvert(dmAux, DMPLEX, &plexA)); 53769566063dSJacob Faibussowitsch PetscCall(DMGetDS(plexA, &probAux)); 53779566063dSJacob Faibussowitsch PetscCall(PetscDSGetTotalDimension(probAux, &totDimAux)); 53789566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(plexA, §ionAux)); 53793e9753d6SMatthew G. Knepley } 53803e9753d6SMatthew G. Knepley 53819566063dSJacob Faibussowitsch PetscCall(DMGetGlobalSection(dm, &globalSection)); 53823e9753d6SMatthew G. Knepley for (v = 0; v < numValues; ++v) { 53833e9753d6SMatthew G. Knepley PetscFEGeom *fgeom; 53843e9753d6SMatthew G. Knepley PetscInt maxDegree; 53853e9753d6SMatthew G. Knepley PetscQuadrature qGeom = NULL; 53863e9753d6SMatthew G. Knepley IS pointIS; 53873e9753d6SMatthew G. Knepley const PetscInt *points; 538806ad1575SMatthew G. Knepley PetscFormKey key; 53893e9753d6SMatthew G. Knepley PetscInt numFaces, face, Nq; 53903e9753d6SMatthew G. Knepley 539145480ffeSMatthew G. Knepley key.label = label; 539245480ffeSMatthew G. Knepley key.value = values[v]; 539306ad1575SMatthew G. Knepley key.part = 0; 53949566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(label, values[v], &pointIS)); 53953e9753d6SMatthew G. Knepley if (!pointIS) continue; /* No points with that id on this process */ 53963e9753d6SMatthew G. Knepley { 53973e9753d6SMatthew G. Knepley IS isectIS; 53983e9753d6SMatthew G. Knepley 53993e9753d6SMatthew G. Knepley /* TODO: Special cases of ISIntersect where it is quick to check a prior if one is a superset of the other */ 54009566063dSJacob Faibussowitsch PetscCall(ISIntersect_Caching_Internal(facetIS, pointIS, &isectIS)); 54019566063dSJacob Faibussowitsch PetscCall(ISDestroy(&pointIS)); 54023e9753d6SMatthew G. Knepley pointIS = isectIS; 54033e9753d6SMatthew G. Knepley } 54049566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(pointIS, &numFaces)); 54059566063dSJacob Faibussowitsch PetscCall(ISGetIndices(pointIS, &points)); 54069566063dSJacob Faibussowitsch PetscCall(PetscMalloc4(numFaces * totDim, &u, locX_t ? numFaces * totDim : 0, &u_t, numFaces * totDim * totDim, &elemMat, locA ? numFaces * totDimAux : 0, &a)); 54079566063dSJacob Faibussowitsch PetscCall(DMFieldGetDegree(coordField, pointIS, NULL, &maxDegree)); 540848a46eb9SPierre Jolivet if (maxDegree <= 1) PetscCall(DMFieldCreateDefaultQuadrature(coordField, pointIS, &qGeom)); 54093e9753d6SMatthew G. Knepley if (!qGeom) { 54103e9753d6SMatthew G. Knepley PetscFE fe; 54113e9753d6SMatthew G. Knepley 54129566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(prob, fieldI, (PetscObject *)&fe)); 54139566063dSJacob Faibussowitsch PetscCall(PetscFEGetFaceQuadrature(fe, &qGeom)); 54149566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)qGeom)); 54153e9753d6SMatthew G. Knepley } 54169566063dSJacob Faibussowitsch PetscCall(PetscQuadratureGetData(qGeom, NULL, NULL, &Nq, NULL, NULL)); 54179566063dSJacob Faibussowitsch PetscCall(DMSNESGetFEGeom(coordField, pointIS, qGeom, PETSC_TRUE, &fgeom)); 54183e9753d6SMatthew G. Knepley for (face = 0; face < numFaces; ++face) { 5419f15274beSMatthew Knepley const PetscInt point = points[face], *support; 54203e9753d6SMatthew G. Knepley PetscScalar *x = NULL; 5421f15274beSMatthew Knepley PetscInt i; 54223e9753d6SMatthew G. Knepley 54239566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(dm, point, &support)); 54249566063dSJacob Faibussowitsch PetscCall(DMPlexVecGetClosure(plex, section, locX, support[0], NULL, &x)); 54253e9753d6SMatthew G. Knepley for (i = 0; i < totDim; ++i) u[face * totDim + i] = x[i]; 54269566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(plex, section, locX, support[0], NULL, &x)); 54273e9753d6SMatthew G. Knepley if (locX_t) { 54289566063dSJacob Faibussowitsch PetscCall(DMPlexVecGetClosure(plex, section, locX_t, support[0], NULL, &x)); 54293e9753d6SMatthew G. Knepley for (i = 0; i < totDim; ++i) u_t[face * totDim + i] = x[i]; 54309566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(plex, section, locX_t, support[0], NULL, &x)); 54313e9753d6SMatthew G. Knepley } 54323e9753d6SMatthew G. Knepley if (locA) { 54333e9753d6SMatthew G. Knepley PetscInt subp; 54349566063dSJacob Faibussowitsch PetscCall(DMGetEnclosurePoint(plexA, dm, encAux, support[0], &subp)); 54359566063dSJacob Faibussowitsch PetscCall(DMPlexVecGetClosure(plexA, sectionAux, locA, subp, NULL, &x)); 54363e9753d6SMatthew G. Knepley for (i = 0; i < totDimAux; ++i) a[face * totDimAux + i] = x[i]; 54379566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(plexA, sectionAux, locA, subp, NULL, &x)); 54383e9753d6SMatthew G. Knepley } 54393e9753d6SMatthew G. Knepley } 54409566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(elemMat, numFaces * totDim * totDim)); 54413e9753d6SMatthew G. Knepley { 54423e9753d6SMatthew G. Knepley PetscFE fe; 54433e9753d6SMatthew G. Knepley PetscInt Nb; 54443e9753d6SMatthew G. Knepley /* Conforming batches */ 54453e9753d6SMatthew G. Knepley PetscInt numChunks, numBatches, numBlocks, Ne, blockSize, batchSize; 54463e9753d6SMatthew G. Knepley /* Remainder */ 54473e9753d6SMatthew G. Knepley PetscFEGeom *chunkGeom = NULL; 54483e9753d6SMatthew G. Knepley PetscInt fieldJ, Nr, offset; 54493e9753d6SMatthew G. Knepley 54509566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(prob, fieldI, (PetscObject *)&fe)); 54519566063dSJacob Faibussowitsch PetscCall(PetscFEGetDimension(fe, &Nb)); 54529566063dSJacob Faibussowitsch PetscCall(PetscFEGetTileSizes(fe, NULL, &numBlocks, NULL, &numBatches)); 54533e9753d6SMatthew G. Knepley blockSize = Nb; 54543e9753d6SMatthew G. Knepley batchSize = numBlocks * blockSize; 54559566063dSJacob Faibussowitsch PetscCall(PetscFESetTileSizes(fe, blockSize, numBlocks, batchSize, numBatches)); 54563e9753d6SMatthew G. Knepley numChunks = numFaces / (numBatches * batchSize); 54573e9753d6SMatthew G. Knepley Ne = numChunks * numBatches * batchSize; 54583e9753d6SMatthew G. Knepley Nr = numFaces % (numBatches * batchSize); 54593e9753d6SMatthew G. Knepley offset = numFaces - Nr; 54609566063dSJacob Faibussowitsch PetscCall(PetscFEGeomGetChunk(fgeom, 0, offset, &chunkGeom)); 54613e9753d6SMatthew G. Knepley for (fieldJ = 0; fieldJ < Nf; ++fieldJ) { 546245480ffeSMatthew G. Knepley key.field = fieldI * Nf + fieldJ; 54639566063dSJacob Faibussowitsch PetscCall(PetscFEIntegrateBdJacobian(prob, wf, key, Ne, chunkGeom, u, u_t, probAux, a, t, X_tShift, elemMat)); 54643e9753d6SMatthew G. Knepley } 54659566063dSJacob Faibussowitsch PetscCall(PetscFEGeomGetChunk(fgeom, offset, numFaces, &chunkGeom)); 54663e9753d6SMatthew G. Knepley for (fieldJ = 0; fieldJ < Nf; ++fieldJ) { 546745480ffeSMatthew G. Knepley key.field = fieldI * Nf + fieldJ; 54689566063dSJacob Faibussowitsch PetscCall(PetscFEIntegrateBdJacobian(prob, wf, key, Nr, chunkGeom, &u[offset * totDim], u_t ? &u_t[offset * totDim] : NULL, probAux, a ? &a[offset * totDimAux] : NULL, t, X_tShift, &elemMat[offset * totDim * totDim])); 54693e9753d6SMatthew G. Knepley } 54709566063dSJacob Faibussowitsch PetscCall(PetscFEGeomRestoreChunk(fgeom, offset, numFaces, &chunkGeom)); 54713e9753d6SMatthew G. Knepley } 54723e9753d6SMatthew G. Knepley for (face = 0; face < numFaces; ++face) { 54733e9753d6SMatthew G. Knepley const PetscInt point = points[face], *support; 54743e9753d6SMatthew G. Knepley 54753e9753d6SMatthew G. Knepley /* Transform to global basis before insertion in Jacobian */ 54769566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(plex, point, &support)); 54779566063dSJacob Faibussowitsch if (transform) PetscCall(DMPlexBasisTransformPointTensor_Internal(dm, tdm, tv, support[0], PETSC_TRUE, totDim, &elemMat[face * totDim * totDim])); 54789566063dSJacob Faibussowitsch if (mesh->printFEM > 1) PetscCall(DMPrintCellMatrix(point, "BdJacobian", totDim, totDim, &elemMat[face * totDim * totDim])); 54799566063dSJacob Faibussowitsch PetscCall(DMPlexMatSetClosure(plex, section, globalSection, JacP, support[0], &elemMat[face * totDim * totDim], ADD_VALUES)); 54803e9753d6SMatthew G. Knepley } 54819566063dSJacob Faibussowitsch PetscCall(DMSNESRestoreFEGeom(coordField, pointIS, qGeom, PETSC_TRUE, &fgeom)); 54829566063dSJacob Faibussowitsch PetscCall(PetscQuadratureDestroy(&qGeom)); 54839566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(pointIS, &points)); 54849566063dSJacob Faibussowitsch PetscCall(ISDestroy(&pointIS)); 54859566063dSJacob Faibussowitsch PetscCall(PetscFree4(u, u_t, elemMat, a)); 54863e9753d6SMatthew G. Knepley } 54879566063dSJacob Faibussowitsch if (plex) PetscCall(DMDestroy(&plex)); 54889566063dSJacob Faibussowitsch if (plexA) PetscCall(DMDestroy(&plexA)); 54893ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 54903e9753d6SMatthew G. Knepley } 54913e9753d6SMatthew G. Knepley 5492d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeBdJacobianSingle(DM dm, PetscReal t, PetscWeakForm wf, DMLabel label, PetscInt numValues, const PetscInt values[], PetscInt field, Vec locX, Vec locX_t, PetscReal X_tShift, Mat Jac, Mat JacP) 5493d71ae5a4SJacob Faibussowitsch { 54943e9753d6SMatthew G. Knepley DMField coordField; 54953e9753d6SMatthew G. Knepley DMLabel depthLabel; 54963e9753d6SMatthew G. Knepley IS facetIS; 54973e9753d6SMatthew G. Knepley PetscInt dim; 54983e9753d6SMatthew G. Knepley 54993e9753d6SMatthew G. Knepley PetscFunctionBegin; 55009566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 55019566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthLabel(dm, &depthLabel)); 55029566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(depthLabel, dim - 1, &facetIS)); 55039566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateField(dm, &coordField)); 55049566063dSJacob Faibussowitsch PetscCall(DMPlexComputeBdJacobian_Single_Internal(dm, t, wf, label, numValues, values, field, locX, locX_t, X_tShift, Jac, JacP, coordField, facetIS)); 55059566063dSJacob Faibussowitsch PetscCall(ISDestroy(&facetIS)); 55063ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 55073e9753d6SMatthew G. Knepley } 55083e9753d6SMatthew G. Knepley 5509*a4e35b19SJacob Faibussowitsch static PetscErrorCode DMPlexComputeBdJacobian_Internal(DM dm, Vec locX, Vec locX_t, PetscReal t, PetscReal X_tShift, Mat Jac, Mat JacP, void *user) 5510d71ae5a4SJacob Faibussowitsch { 55113e9753d6SMatthew G. Knepley PetscDS prob; 55123e9753d6SMatthew G. Knepley PetscInt dim, numBd, bd; 55133e9753d6SMatthew G. Knepley DMLabel depthLabel; 55143e9753d6SMatthew G. Knepley DMField coordField = NULL; 55153e9753d6SMatthew G. Knepley IS facetIS; 55163e9753d6SMatthew G. Knepley 55173e9753d6SMatthew G. Knepley PetscFunctionBegin; 55189566063dSJacob Faibussowitsch PetscCall(DMGetDS(dm, &prob)); 55199566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthLabel(dm, &depthLabel)); 55209566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 55219566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(depthLabel, dim - 1, &facetIS)); 55229566063dSJacob Faibussowitsch PetscCall(PetscDSGetNumBoundary(prob, &numBd)); 55239566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateField(dm, &coordField)); 55243e9753d6SMatthew G. Knepley for (bd = 0; bd < numBd; ++bd) { 552545480ffeSMatthew G. Knepley PetscWeakForm wf; 55263e9753d6SMatthew G. Knepley DMBoundaryConditionType type; 55273e9753d6SMatthew G. Knepley DMLabel label; 55283e9753d6SMatthew G. Knepley const PetscInt *values; 55293e9753d6SMatthew G. Knepley PetscInt fieldI, numValues; 55303e9753d6SMatthew G. Knepley PetscObject obj; 55313e9753d6SMatthew G. Knepley PetscClassId id; 55323e9753d6SMatthew G. Knepley 55339566063dSJacob Faibussowitsch PetscCall(PetscDSGetBoundary(prob, bd, &wf, &type, NULL, &label, &numValues, &values, &fieldI, NULL, NULL, NULL, NULL, NULL)); 55343d3e5d66SMatthew G. Knepley if (type & DM_BC_ESSENTIAL) continue; 55359566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(prob, fieldI, &obj)); 55369566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 55373d3e5d66SMatthew G. Knepley if (id != PETSCFE_CLASSID) continue; 55389566063dSJacob Faibussowitsch PetscCall(DMPlexComputeBdJacobian_Single_Internal(dm, t, wf, label, numValues, values, fieldI, locX, locX_t, X_tShift, Jac, JacP, coordField, facetIS)); 55393e9753d6SMatthew G. Knepley } 55409566063dSJacob Faibussowitsch PetscCall(ISDestroy(&facetIS)); 55413ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 55423e9753d6SMatthew G. Knepley } 55433e9753d6SMatthew G. Knepley 5544d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeJacobian_Internal(DM dm, PetscFormKey key, IS cellIS, PetscReal t, PetscReal X_tShift, Vec X, Vec X_t, Mat Jac, Mat JacP, void *user) 5545d71ae5a4SJacob Faibussowitsch { 55463e9753d6SMatthew G. Knepley DM_Plex *mesh = (DM_Plex *)dm->data; 55473e9753d6SMatthew G. Knepley const char *name = "Jacobian"; 55489a2a23afSMatthew G. Knepley DM dmAux = NULL, plex, tdm; 55493e9753d6SMatthew G. Knepley DMEnclosureType encAux; 55503e9753d6SMatthew G. Knepley Vec A, tv; 55513e9753d6SMatthew G. Knepley DMField coordField; 55523e9753d6SMatthew G. Knepley PetscDS prob, probAux = NULL; 5553e432b41dSStefano Zampini PetscSection section, globalSection, sectionAux; 55543e9753d6SMatthew G. Knepley PetscScalar *elemMat, *elemMatP, *elemMatD, *u, *u_t, *a = NULL; 55553e9753d6SMatthew G. Knepley const PetscInt *cells; 55563e9753d6SMatthew G. Knepley PetscInt Nf, fieldI, fieldJ; 555728351e22SJed Brown PetscInt totDim, totDimAux = 0, cStart, cEnd, numCells, c; 5558e04ae0b4SMatthew G. Knepley PetscBool hasJac = PETSC_FALSE, hasPrec = PETSC_FALSE, hasDyn, hasFV = PETSC_FALSE, transform; 55593e9753d6SMatthew G. Knepley 55603e9753d6SMatthew G. Knepley PetscFunctionBegin; 5561af18b51aSmarkadams4 PetscCall(PetscLogEventBegin(DMPLEX_JacobianFEM, dm, 0, 0, 0)); 5562e04ae0b4SMatthew G. Knepley if (!cellIS) goto end; 55639566063dSJacob Faibussowitsch PetscCall(ISGetPointRange(cellIS, &cStart, &cEnd, &cells)); 5564437e83fbSMatthew G. Knepley PetscCall(ISGetLocalSize(cellIS, &numCells)); 5565437e83fbSMatthew G. Knepley if (cStart >= cEnd) goto end; 55669566063dSJacob Faibussowitsch PetscCall(DMHasBasisTransform(dm, &transform)); 55679566063dSJacob Faibussowitsch PetscCall(DMGetBasisTransformDM_Internal(dm, &tdm)); 55689566063dSJacob Faibussowitsch PetscCall(DMGetBasisTransformVec_Internal(dm, &tv)); 55699566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, §ion)); 55709566063dSJacob Faibussowitsch PetscCall(DMGetGlobalSection(dm, &globalSection)); 557107218a29SMatthew G. Knepley PetscCall(DMGetCellDS(dm, cells ? cells[cStart] : cStart, &prob, NULL)); 55729566063dSJacob Faibussowitsch PetscCall(PetscDSGetNumFields(prob, &Nf)); 55739566063dSJacob Faibussowitsch PetscCall(PetscDSGetTotalDimension(prob, &totDim)); 55749566063dSJacob Faibussowitsch PetscCall(PetscDSHasJacobian(prob, &hasJac)); 55759566063dSJacob Faibussowitsch PetscCall(PetscDSHasJacobianPreconditioner(prob, &hasPrec)); 55763e9753d6SMatthew G. Knepley /* user passed in the same matrix, avoid double contributions and 55773e9753d6SMatthew G. Knepley only assemble the Jacobian */ 55783e9753d6SMatthew G. Knepley if (hasJac && Jac == JacP) hasPrec = PETSC_FALSE; 55799566063dSJacob Faibussowitsch PetscCall(PetscDSHasDynamicJacobian(prob, &hasDyn)); 55803e9753d6SMatthew G. Knepley hasDyn = hasDyn && (X_tShift != 0.0) ? PETSC_TRUE : PETSC_FALSE; 55819566063dSJacob Faibussowitsch PetscCall(DMGetAuxiliaryVec(dm, key.label, key.value, key.part, &A)); 55829a2a23afSMatthew G. Knepley if (A) { 55839566063dSJacob Faibussowitsch PetscCall(VecGetDM(A, &dmAux)); 55849566063dSJacob Faibussowitsch PetscCall(DMGetEnclosureRelation(dmAux, dm, &encAux)); 55859566063dSJacob Faibussowitsch PetscCall(DMConvert(dmAux, DMPLEX, &plex)); 55869566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(plex, §ionAux)); 55879566063dSJacob Faibussowitsch PetscCall(DMGetDS(dmAux, &probAux)); 55889566063dSJacob Faibussowitsch PetscCall(PetscDSGetTotalDimension(probAux, &totDimAux)); 55893e9753d6SMatthew G. Knepley } 55909566063dSJacob Faibussowitsch PetscCall(PetscMalloc5(numCells * totDim, &u, X_t ? numCells * totDim : 0, &u_t, hasJac ? numCells * totDim * totDim : 0, &elemMat, hasPrec ? numCells * totDim * totDim : 0, &elemMatP, hasDyn ? numCells * totDim * totDim : 0, &elemMatD)); 55919566063dSJacob Faibussowitsch if (dmAux) PetscCall(PetscMalloc1(numCells * totDimAux, &a)); 55929566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateField(dm, &coordField)); 55933e9753d6SMatthew G. Knepley for (c = cStart; c < cEnd; ++c) { 55943e9753d6SMatthew G. Knepley const PetscInt cell = cells ? cells[c] : c; 55953e9753d6SMatthew G. Knepley const PetscInt cind = c - cStart; 55963e9753d6SMatthew G. Knepley PetscScalar *x = NULL, *x_t = NULL; 55973e9753d6SMatthew G. Knepley PetscInt i; 55983e9753d6SMatthew G. Knepley 55999566063dSJacob Faibussowitsch PetscCall(DMPlexVecGetClosure(dm, section, X, cell, NULL, &x)); 56003e9753d6SMatthew G. Knepley for (i = 0; i < totDim; ++i) u[cind * totDim + i] = x[i]; 56019566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(dm, section, X, cell, NULL, &x)); 56023e9753d6SMatthew G. Knepley if (X_t) { 56039566063dSJacob Faibussowitsch PetscCall(DMPlexVecGetClosure(dm, section, X_t, cell, NULL, &x_t)); 56043e9753d6SMatthew G. Knepley for (i = 0; i < totDim; ++i) u_t[cind * totDim + i] = x_t[i]; 56059566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(dm, section, X_t, cell, NULL, &x_t)); 56063e9753d6SMatthew G. Knepley } 56073e9753d6SMatthew G. Knepley if (dmAux) { 56083e9753d6SMatthew G. Knepley PetscInt subcell; 56099566063dSJacob Faibussowitsch PetscCall(DMGetEnclosurePoint(dmAux, dm, encAux, cell, &subcell)); 56109566063dSJacob Faibussowitsch PetscCall(DMPlexVecGetClosure(plex, sectionAux, A, subcell, NULL, &x)); 56113e9753d6SMatthew G. Knepley for (i = 0; i < totDimAux; ++i) a[cind * totDimAux + i] = x[i]; 56129566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(plex, sectionAux, A, subcell, NULL, &x)); 56133e9753d6SMatthew G. Knepley } 56143e9753d6SMatthew G. Knepley } 56159566063dSJacob Faibussowitsch if (hasJac) PetscCall(PetscArrayzero(elemMat, numCells * totDim * totDim)); 56169566063dSJacob Faibussowitsch if (hasPrec) PetscCall(PetscArrayzero(elemMatP, numCells * totDim * totDim)); 56179566063dSJacob Faibussowitsch if (hasDyn) PetscCall(PetscArrayzero(elemMatD, numCells * totDim * totDim)); 56183e9753d6SMatthew G. Knepley for (fieldI = 0; fieldI < Nf; ++fieldI) { 56193e9753d6SMatthew G. Knepley PetscClassId id; 56203e9753d6SMatthew G. Knepley PetscFE fe; 56213e9753d6SMatthew G. Knepley PetscQuadrature qGeom = NULL; 56223e9753d6SMatthew G. Knepley PetscInt Nb; 56233e9753d6SMatthew G. Knepley /* Conforming batches */ 56243e9753d6SMatthew G. Knepley PetscInt numChunks, numBatches, numBlocks, Ne, blockSize, batchSize; 56253e9753d6SMatthew G. Knepley /* Remainder */ 56263e9753d6SMatthew G. Knepley PetscInt Nr, offset, Nq; 56273e9753d6SMatthew G. Knepley PetscInt maxDegree; 56283e9753d6SMatthew G. Knepley PetscFEGeom *cgeomFEM, *chunkGeom = NULL, *remGeom = NULL; 56293e9753d6SMatthew G. Knepley 56309566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(prob, fieldI, (PetscObject *)&fe)); 56319566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId((PetscObject)fe, &id)); 56329371c9d4SSatish Balay if (id == PETSCFV_CLASSID) { 56339371c9d4SSatish Balay hasFV = PETSC_TRUE; 56349371c9d4SSatish Balay continue; 56359371c9d4SSatish Balay } 56369566063dSJacob Faibussowitsch PetscCall(PetscFEGetDimension(fe, &Nb)); 56379566063dSJacob Faibussowitsch PetscCall(PetscFEGetTileSizes(fe, NULL, &numBlocks, NULL, &numBatches)); 56389566063dSJacob Faibussowitsch PetscCall(DMFieldGetDegree(coordField, cellIS, NULL, &maxDegree)); 563948a46eb9SPierre Jolivet if (maxDegree <= 1) PetscCall(DMFieldCreateDefaultQuadrature(coordField, cellIS, &qGeom)); 56403e9753d6SMatthew G. Knepley if (!qGeom) { 56419566063dSJacob Faibussowitsch PetscCall(PetscFEGetQuadrature(fe, &qGeom)); 56429566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)qGeom)); 56433e9753d6SMatthew G. Knepley } 56449566063dSJacob Faibussowitsch PetscCall(PetscQuadratureGetData(qGeom, NULL, NULL, &Nq, NULL, NULL)); 56459566063dSJacob Faibussowitsch PetscCall(DMSNESGetFEGeom(coordField, cellIS, qGeom, PETSC_FALSE, &cgeomFEM)); 56463e9753d6SMatthew G. Knepley blockSize = Nb; 56473e9753d6SMatthew G. Knepley batchSize = numBlocks * blockSize; 56489566063dSJacob Faibussowitsch PetscCall(PetscFESetTileSizes(fe, blockSize, numBlocks, batchSize, numBatches)); 56493e9753d6SMatthew G. Knepley numChunks = numCells / (numBatches * batchSize); 56503e9753d6SMatthew G. Knepley Ne = numChunks * numBatches * batchSize; 56513e9753d6SMatthew G. Knepley Nr = numCells % (numBatches * batchSize); 56523e9753d6SMatthew G. Knepley offset = numCells - Nr; 56539566063dSJacob Faibussowitsch PetscCall(PetscFEGeomGetChunk(cgeomFEM, 0, offset, &chunkGeom)); 56549566063dSJacob Faibussowitsch PetscCall(PetscFEGeomGetChunk(cgeomFEM, offset, numCells, &remGeom)); 56553e9753d6SMatthew G. Knepley for (fieldJ = 0; fieldJ < Nf; ++fieldJ) { 56566528b96dSMatthew G. Knepley key.field = fieldI * Nf + fieldJ; 56573e9753d6SMatthew G. Knepley if (hasJac) { 56589566063dSJacob Faibussowitsch PetscCall(PetscFEIntegrateJacobian(prob, PETSCFE_JACOBIAN, key, Ne, chunkGeom, u, u_t, probAux, a, t, X_tShift, elemMat)); 5659072f5ffdSStefano Zampini PetscCall(PetscFEIntegrateJacobian(prob, PETSCFE_JACOBIAN, key, Nr, remGeom, &u[offset * totDim], u_t ? &u_t[offset * totDim] : NULL, probAux, a ? &a[offset * totDimAux] : NULL, t, X_tShift, &elemMat[offset * totDim * totDim])); 56603e9753d6SMatthew G. Knepley } 56613e9753d6SMatthew G. Knepley if (hasPrec) { 56629566063dSJacob Faibussowitsch PetscCall(PetscFEIntegrateJacobian(prob, PETSCFE_JACOBIAN_PRE, key, Ne, chunkGeom, u, u_t, probAux, a, t, X_tShift, elemMatP)); 5663072f5ffdSStefano Zampini PetscCall(PetscFEIntegrateJacobian(prob, PETSCFE_JACOBIAN_PRE, key, Nr, remGeom, &u[offset * totDim], u_t ? &u_t[offset * totDim] : NULL, probAux, a ? &a[offset * totDimAux] : NULL, t, X_tShift, &elemMatP[offset * totDim * totDim])); 56643e9753d6SMatthew G. Knepley } 56653e9753d6SMatthew G. Knepley if (hasDyn) { 56669566063dSJacob Faibussowitsch PetscCall(PetscFEIntegrateJacobian(prob, PETSCFE_JACOBIAN_DYN, key, Ne, chunkGeom, u, u_t, probAux, a, t, X_tShift, elemMatD)); 5667072f5ffdSStefano Zampini PetscCall(PetscFEIntegrateJacobian(prob, PETSCFE_JACOBIAN_DYN, key, Nr, remGeom, &u[offset * totDim], u_t ? &u_t[offset * totDim] : NULL, probAux, a ? &a[offset * totDimAux] : NULL, t, X_tShift, &elemMatD[offset * totDim * totDim])); 56683e9753d6SMatthew G. Knepley } 56693e9753d6SMatthew G. Knepley } 56709566063dSJacob Faibussowitsch PetscCall(PetscFEGeomRestoreChunk(cgeomFEM, offset, numCells, &remGeom)); 56719566063dSJacob Faibussowitsch PetscCall(PetscFEGeomRestoreChunk(cgeomFEM, 0, offset, &chunkGeom)); 56729566063dSJacob Faibussowitsch PetscCall(DMSNESRestoreFEGeom(coordField, cellIS, qGeom, PETSC_FALSE, &cgeomFEM)); 56739566063dSJacob Faibussowitsch PetscCall(PetscQuadratureDestroy(&qGeom)); 56743e9753d6SMatthew G. Knepley } 56753e9753d6SMatthew G. Knepley /* Add contribution from X_t */ 56769371c9d4SSatish Balay if (hasDyn) { 56779371c9d4SSatish Balay for (c = 0; c < numCells * totDim * totDim; ++c) elemMat[c] += X_tShift * elemMatD[c]; 56789371c9d4SSatish Balay } 56793e9753d6SMatthew G. Knepley if (hasFV) { 56803e9753d6SMatthew G. Knepley PetscClassId id; 56813e9753d6SMatthew G. Knepley PetscFV fv; 56823e9753d6SMatthew G. Knepley PetscInt offsetI, NcI, NbI = 1, fc, f; 56833e9753d6SMatthew G. Knepley 56843e9753d6SMatthew G. Knepley for (fieldI = 0; fieldI < Nf; ++fieldI) { 56859566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(prob, fieldI, (PetscObject *)&fv)); 56869566063dSJacob Faibussowitsch PetscCall(PetscDSGetFieldOffset(prob, fieldI, &offsetI)); 56879566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId((PetscObject)fv, &id)); 56883e9753d6SMatthew G. Knepley if (id != PETSCFV_CLASSID) continue; 56893e9753d6SMatthew G. Knepley /* Put in the identity */ 56909566063dSJacob Faibussowitsch PetscCall(PetscFVGetNumComponents(fv, &NcI)); 56913e9753d6SMatthew G. Knepley for (c = cStart; c < cEnd; ++c) { 56923e9753d6SMatthew G. Knepley const PetscInt cind = c - cStart; 56933e9753d6SMatthew G. Knepley const PetscInt eOffset = cind * totDim * totDim; 56943e9753d6SMatthew G. Knepley for (fc = 0; fc < NcI; ++fc) { 56953e9753d6SMatthew G. Knepley for (f = 0; f < NbI; ++f) { 56963e9753d6SMatthew G. Knepley const PetscInt i = offsetI + f * NcI + fc; 56973e9753d6SMatthew G. Knepley if (hasPrec) { 5698ad540459SPierre Jolivet if (hasJac) elemMat[eOffset + i * totDim + i] = 1.0; 56993e9753d6SMatthew G. Knepley elemMatP[eOffset + i * totDim + i] = 1.0; 57009371c9d4SSatish Balay } else { 57019371c9d4SSatish Balay elemMat[eOffset + i * totDim + i] = 1.0; 57029371c9d4SSatish Balay } 57033e9753d6SMatthew G. Knepley } 57043e9753d6SMatthew G. Knepley } 57053e9753d6SMatthew G. Knepley } 57063e9753d6SMatthew G. Knepley } 57073e9753d6SMatthew G. Knepley /* No allocated space for FV stuff, so ignore the zero entries */ 57089566063dSJacob Faibussowitsch PetscCall(MatSetOption(JacP, MAT_IGNORE_ZERO_ENTRIES, PETSC_TRUE)); 57093e9753d6SMatthew G. Knepley } 57103e9753d6SMatthew G. Knepley /* Insert values into matrix */ 57113e9753d6SMatthew G. Knepley for (c = cStart; c < cEnd; ++c) { 57123e9753d6SMatthew G. Knepley const PetscInt cell = cells ? cells[c] : c; 57133e9753d6SMatthew G. Knepley const PetscInt cind = c - cStart; 57143e9753d6SMatthew G. Knepley 57153e9753d6SMatthew G. Knepley /* Transform to global basis before insertion in Jacobian */ 57169566063dSJacob Faibussowitsch if (transform) PetscCall(DMPlexBasisTransformPointTensor_Internal(dm, tdm, tv, cell, PETSC_TRUE, totDim, &elemMat[cind * totDim * totDim])); 57173e9753d6SMatthew G. Knepley if (hasPrec) { 57183e9753d6SMatthew G. Knepley if (hasJac) { 57199566063dSJacob Faibussowitsch if (mesh->printFEM > 1) PetscCall(DMPrintCellMatrix(cell, name, totDim, totDim, &elemMat[cind * totDim * totDim])); 57209566063dSJacob Faibussowitsch PetscCall(DMPlexMatSetClosure(dm, section, globalSection, Jac, cell, &elemMat[cind * totDim * totDim], ADD_VALUES)); 57213e9753d6SMatthew G. Knepley } 57229566063dSJacob Faibussowitsch if (mesh->printFEM > 1) PetscCall(DMPrintCellMatrix(cell, name, totDim, totDim, &elemMatP[cind * totDim * totDim])); 57239566063dSJacob Faibussowitsch PetscCall(DMPlexMatSetClosure(dm, section, globalSection, JacP, cell, &elemMatP[cind * totDim * totDim], ADD_VALUES)); 57243e9753d6SMatthew G. Knepley } else { 57253e9753d6SMatthew G. Knepley if (hasJac) { 57269566063dSJacob Faibussowitsch if (mesh->printFEM > 1) PetscCall(DMPrintCellMatrix(cell, name, totDim, totDim, &elemMat[cind * totDim * totDim])); 57279566063dSJacob Faibussowitsch PetscCall(DMPlexMatSetClosure(dm, section, globalSection, JacP, cell, &elemMat[cind * totDim * totDim], ADD_VALUES)); 57283e9753d6SMatthew G. Knepley } 57293e9753d6SMatthew G. Knepley } 57303e9753d6SMatthew G. Knepley } 57319566063dSJacob Faibussowitsch PetscCall(ISRestorePointRange(cellIS, &cStart, &cEnd, &cells)); 57329566063dSJacob Faibussowitsch if (hasFV) PetscCall(MatSetOption(JacP, MAT_IGNORE_ZERO_ENTRIES, PETSC_FALSE)); 57339566063dSJacob Faibussowitsch PetscCall(PetscFree5(u, u_t, elemMat, elemMatP, elemMatD)); 57343e9753d6SMatthew G. Knepley if (dmAux) { 57359566063dSJacob Faibussowitsch PetscCall(PetscFree(a)); 57369566063dSJacob Faibussowitsch PetscCall(DMDestroy(&plex)); 57373e9753d6SMatthew G. Knepley } 57383e9753d6SMatthew G. Knepley /* Compute boundary integrals */ 57399566063dSJacob Faibussowitsch PetscCall(DMPlexComputeBdJacobian_Internal(dm, X, X_t, t, X_tShift, Jac, JacP, user)); 57403e9753d6SMatthew G. Knepley /* Assemble matrix */ 57419371c9d4SSatish Balay end : { 5742e04ae0b4SMatthew G. Knepley PetscBool assOp = hasJac && hasPrec ? PETSC_TRUE : PETSC_FALSE, gassOp; 5743e04ae0b4SMatthew G. Knepley 5744712fec58SPierre Jolivet PetscCall(MPIU_Allreduce(&assOp, &gassOp, 1, MPIU_BOOL, MPI_LOR, PetscObjectComm((PetscObject)dm))); 57453e9753d6SMatthew G. Knepley if (hasJac && hasPrec) { 57469566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(Jac, MAT_FINAL_ASSEMBLY)); 57479566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(Jac, MAT_FINAL_ASSEMBLY)); 57483e9753d6SMatthew G. Knepley } 5749e04ae0b4SMatthew G. Knepley } 57509566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(JacP, MAT_FINAL_ASSEMBLY)); 57519566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(JacP, MAT_FINAL_ASSEMBLY)); 57529566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DMPLEX_JacobianFEM, dm, 0, 0, 0)); 57533ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 57543e9753d6SMatthew G. Knepley } 57553e9753d6SMatthew G. Knepley 5756d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeJacobian_Hybrid_Internal(DM dm, PetscFormKey key[], IS cellIS, PetscReal t, PetscReal X_tShift, Vec locX, Vec locX_t, Mat Jac, Mat JacP, void *user) 5757d71ae5a4SJacob Faibussowitsch { 57583e9753d6SMatthew G. Knepley DM_Plex *mesh = (DM_Plex *)dm->data; 57593e9753d6SMatthew G. Knepley const char *name = "Hybrid Jacobian"; 5760148442b3SMatthew G. Knepley DM dmAux[3] = {NULL, NULL, NULL}; 5761148442b3SMatthew G. Knepley DMLabel ghostLabel = NULL; 57623e9753d6SMatthew G. Knepley DM plex = NULL; 57633e9753d6SMatthew G. Knepley DM plexA = NULL; 5764148442b3SMatthew G. Knepley PetscDS ds = NULL; 576507218a29SMatthew G. Knepley PetscDS dsIn = NULL; 5766148442b3SMatthew G. Knepley PetscDS dsAux[3] = {NULL, NULL, NULL}; 5767148442b3SMatthew G. Knepley Vec locA[3] = {NULL, NULL, NULL}; 576807218a29SMatthew G. Knepley DM dmScale[3] = {NULL, NULL, NULL}; 576907218a29SMatthew G. Knepley PetscDS dsScale[3] = {NULL, NULL, NULL}; 577007218a29SMatthew G. Knepley Vec locS[3] = {NULL, NULL, NULL}; 57713e9753d6SMatthew G. Knepley PetscSection section = NULL; 5772148442b3SMatthew G. Knepley PetscSection sectionAux[3] = {NULL, NULL, NULL}; 57733e9753d6SMatthew G. Knepley DMField coordField = NULL; 577407218a29SMatthew G. Knepley PetscScalar *a[3] = {NULL, NULL, NULL}; 577507218a29SMatthew G. Knepley PetscScalar *s[3] = {NULL, NULL, NULL}; 577607218a29SMatthew G. Knepley PetscScalar *u = NULL, *u_t; 577707218a29SMatthew G. Knepley PetscScalar *elemMatNeg, *elemMatPos, *elemMatCoh; 577807218a29SMatthew G. Knepley PetscScalar *elemMatNegP, *elemMatPosP, *elemMatCohP; 5779e432b41dSStefano Zampini PetscSection globalSection; 57803e9753d6SMatthew G. Knepley IS chunkIS; 57813e9753d6SMatthew G. Knepley const PetscInt *cells; 57823e9753d6SMatthew G. Knepley PetscInt *faces; 57833e9753d6SMatthew G. Knepley PetscInt cStart, cEnd, numCells; 57843e2b0218SMatthew G. Knepley PetscInt Nf, fieldI, fieldJ, totDim, totDimIn, totDimAux[3], totDimScale[3], numChunks, cellChunkSize, chunk; 57853e9753d6SMatthew G. Knepley PetscInt maxDegree = PETSC_MAX_INT; 57863e9753d6SMatthew G. Knepley PetscQuadrature affineQuad = NULL, *quads = NULL; 57873e9753d6SMatthew G. Knepley PetscFEGeom *affineGeom = NULL, **geoms = NULL; 5788e432b41dSStefano Zampini PetscBool hasBdJac, hasBdPrec; 57893e9753d6SMatthew G. Knepley 57903e9753d6SMatthew G. Knepley PetscFunctionBegin; 57913ba16761SJacob Faibussowitsch if (!cellIS) PetscFunctionReturn(PETSC_SUCCESS); 5792437e83fbSMatthew G. Knepley PetscCall(ISGetPointRange(cellIS, &cStart, &cEnd, &cells)); 5793437e83fbSMatthew G. Knepley PetscCall(ISGetLocalSize(cellIS, &numCells)); 57943ba16761SJacob Faibussowitsch if (cStart >= cEnd) PetscFunctionReturn(PETSC_SUCCESS); 57955fedec97SMatthew G. Knepley if ((key[0].label == key[1].label) && (key[0].value == key[1].value) && (key[0].part == key[1].part)) { 57965fedec97SMatthew G. Knepley const char *name; 57979566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)key[0].label, &name)); 579863a3b9bcSJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Form keys for each side of a cohesive surface must be different (%s, %" PetscInt_FMT ", %" PetscInt_FMT ")", name, key[0].value, key[0].part); 57995fedec97SMatthew G. Knepley } 58009566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DMPLEX_JacobianFEM, dm, 0, 0, 0)); 58019566063dSJacob Faibussowitsch PetscCall(DMConvert(dm, DMPLEX, &plex)); 58029566063dSJacob Faibussowitsch PetscCall(DMGetSection(dm, §ion)); 58039566063dSJacob Faibussowitsch PetscCall(DMGetGlobalSection(dm, &globalSection)); 58049566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, "ghost", &ghostLabel)); 580507218a29SMatthew G. Knepley PetscCall(DMGetCellDS(dm, cells ? cells[cStart] : cStart, &ds, &dsIn)); 58069566063dSJacob Faibussowitsch PetscCall(PetscDSGetNumFields(ds, &Nf)); 58079566063dSJacob Faibussowitsch PetscCall(PetscDSGetTotalDimension(ds, &totDim)); 580807218a29SMatthew G. Knepley PetscCall(PetscDSGetTotalDimension(dsIn, &totDimIn)); 58099566063dSJacob Faibussowitsch PetscCall(PetscDSHasBdJacobian(ds, &hasBdJac)); 58109566063dSJacob Faibussowitsch PetscCall(PetscDSHasBdJacobianPreconditioner(ds, &hasBdPrec)); 58119566063dSJacob Faibussowitsch PetscCall(DMGetAuxiliaryVec(dm, key[2].label, key[2].value, key[2].part, &locA[2])); 5812148442b3SMatthew G. Knepley if (locA[2]) { 58131059d808SMatthew G. Knepley const PetscInt cellStart = cells ? cells[cStart] : cStart; 58141059d808SMatthew G. Knepley 58159566063dSJacob Faibussowitsch PetscCall(VecGetDM(locA[2], &dmAux[2])); 58169566063dSJacob Faibussowitsch PetscCall(DMConvert(dmAux[2], DMPLEX, &plexA)); 58179566063dSJacob Faibussowitsch PetscCall(DMGetSection(dmAux[2], §ionAux[2])); 581807218a29SMatthew G. Knepley PetscCall(DMGetCellDS(dmAux[2], cellStart, &dsAux[2], NULL)); 58199566063dSJacob Faibussowitsch PetscCall(PetscDSGetTotalDimension(dsAux[2], &totDimAux[2])); 5820148442b3SMatthew G. Knepley { 5821148442b3SMatthew G. Knepley const PetscInt *cone; 5822148442b3SMatthew G. Knepley PetscInt c; 5823148442b3SMatthew G. Knepley 58241059d808SMatthew G. Knepley PetscCall(DMPlexGetCone(dm, cellStart, &cone)); 5825148442b3SMatthew G. Knepley for (c = 0; c < 2; ++c) { 5826148442b3SMatthew G. Knepley const PetscInt *support; 5827148442b3SMatthew G. Knepley PetscInt ssize, s; 5828148442b3SMatthew G. Knepley 58299566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(dm, cone[c], &support)); 58309566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dm, cone[c], &ssize)); 58311059d808SMatthew G. Knepley PetscCheck(ssize == 2, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Face %" PetscInt_FMT " from cell %" PetscInt_FMT " has support size %" PetscInt_FMT " != 2", cone[c], cellStart, ssize); 58321059d808SMatthew G. Knepley if (support[0] == cellStart) s = 1; 58331059d808SMatthew G. Knepley else if (support[1] == cellStart) s = 0; 58341059d808SMatthew G. Knepley else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Face %" PetscInt_FMT " does not have cell %" PetscInt_FMT " in its support", cone[c], cellStart); 58359566063dSJacob Faibussowitsch PetscCall(DMGetAuxiliaryVec(dm, key[c].label, key[c].value, key[c].part, &locA[c])); 58369566063dSJacob Faibussowitsch if (locA[c]) PetscCall(VecGetDM(locA[c], &dmAux[c])); 5837ad540459SPierre Jolivet else dmAux[c] = dmAux[2]; 583807218a29SMatthew G. Knepley PetscCall(DMGetCellDS(dmAux[c], support[s], &dsAux[c], NULL)); 58399566063dSJacob Faibussowitsch PetscCall(PetscDSGetTotalDimension(dsAux[c], &totDimAux[c])); 5840148442b3SMatthew G. Knepley } 5841148442b3SMatthew G. Knepley } 58423e9753d6SMatthew G. Knepley } 584307218a29SMatthew G. Knepley /* Handle mass matrix scaling 584407218a29SMatthew G. Knepley The field in key[2] is the field to be scaled, and the scaling field is the first in the dsScale */ 584507218a29SMatthew G. Knepley PetscCall(DMGetAuxiliaryVec(dm, key[2].label, -key[2].value, key[2].part, &locS[2])); 584607218a29SMatthew G. Knepley if (locS[2]) { 58473e2b0218SMatthew G. Knepley const PetscInt cellStart = cells ? cells[cStart] : cStart; 584807218a29SMatthew G. Knepley PetscInt Nb, Nbs; 584907218a29SMatthew G. Knepley 585007218a29SMatthew G. Knepley PetscCall(VecGetDM(locS[2], &dmScale[2])); 585107218a29SMatthew G. Knepley PetscCall(DMGetCellDS(dmScale[2], cells ? cells[cStart] : cStart, &dsScale[2], NULL)); 58523e2b0218SMatthew G. Knepley PetscCall(PetscDSGetTotalDimension(dsScale[2], &totDimScale[2])); 585307218a29SMatthew G. Knepley // BRAD: This is not set correctly 585407218a29SMatthew G. Knepley key[2].field = 2; 585507218a29SMatthew G. Knepley PetscCall(PetscDSGetFieldSize(ds, key[2].field, &Nb)); 585607218a29SMatthew G. Knepley PetscCall(PetscDSGetFieldSize(dsScale[2], 0, &Nbs)); 585707218a29SMatthew G. Knepley PetscCheck(Nb == Nbs, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "Field %" PetscInt_FMT " of size %" PetscInt_FMT " cannot be scaled by field of size %" PetscInt_FMT, key[2].field, Nb, Nbs); 58583e2b0218SMatthew G. Knepley { 58593e2b0218SMatthew G. Knepley const PetscInt *cone; 58603e2b0218SMatthew G. Knepley PetscInt c; 58613e2b0218SMatthew G. Knepley 58623e2b0218SMatthew G. Knepley locS[1] = locS[0] = locS[2]; 58633e2b0218SMatthew G. Knepley dmScale[1] = dmScale[0] = dmScale[2]; 58643e2b0218SMatthew G. Knepley PetscCall(DMPlexGetCone(dm, cellStart, &cone)); 58653e2b0218SMatthew G. Knepley for (c = 0; c < 2; ++c) { 58663e2b0218SMatthew G. Knepley const PetscInt *support; 58673e2b0218SMatthew G. Knepley PetscInt ssize, s; 58683e2b0218SMatthew G. Knepley 58693e2b0218SMatthew G. Knepley PetscCall(DMPlexGetSupport(dm, cone[c], &support)); 58703e2b0218SMatthew G. Knepley PetscCall(DMPlexGetSupportSize(dm, cone[c], &ssize)); 58713e2b0218SMatthew G. Knepley PetscCheck(ssize == 2, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Face %" PetscInt_FMT " from cell %" PetscInt_FMT " has support size %" PetscInt_FMT " != 2", cone[c], cellStart, ssize); 58723e2b0218SMatthew G. Knepley if (support[0] == cellStart) s = 1; 58733e2b0218SMatthew G. Knepley else if (support[1] == cellStart) s = 0; 58743e2b0218SMatthew G. Knepley else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Face %" PetscInt_FMT " does not have cell %" PetscInt_FMT " in its support", cone[c], cellStart); 58753e2b0218SMatthew G. Knepley PetscCall(DMGetCellDS(dmScale[c], support[s], &dsScale[c], NULL)); 58763e2b0218SMatthew G. Knepley PetscCall(PetscDSGetTotalDimension(dsScale[c], &totDimScale[c])); 58773e2b0218SMatthew G. Knepley } 58783e2b0218SMatthew G. Knepley } 587907218a29SMatthew G. Knepley } 588007218a29SMatthew G. Knepley /* 2: Setup geometric data */ 58819566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateField(dm, &coordField)); 58829566063dSJacob Faibussowitsch PetscCall(DMFieldGetDegree(coordField, cellIS, NULL, &maxDegree)); 58833e9753d6SMatthew G. Knepley if (maxDegree > 1) { 58843e9753d6SMatthew G. Knepley PetscInt f; 58859566063dSJacob Faibussowitsch PetscCall(PetscCalloc2(Nf, &quads, Nf, &geoms)); 58863e9753d6SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 58873e9753d6SMatthew G. Knepley PetscFE fe; 58883e9753d6SMatthew G. Knepley 58899566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(ds, f, (PetscObject *)&fe)); 58903e9753d6SMatthew G. Knepley if (fe) { 58919566063dSJacob Faibussowitsch PetscCall(PetscFEGetQuadrature(fe, &quads[f])); 58929566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)quads[f])); 58933e9753d6SMatthew G. Knepley } 58943e9753d6SMatthew G. Knepley } 58953e9753d6SMatthew G. Knepley } 589607218a29SMatthew G. Knepley /* Loop over chunks */ 58973e9753d6SMatthew G. Knepley cellChunkSize = numCells; 58983e9753d6SMatthew G. Knepley numChunks = !numCells ? 0 : PetscCeilReal(((PetscReal)numCells) / cellChunkSize); 589907218a29SMatthew G. Knepley PetscCall(PetscCalloc1(2 * cellChunkSize, &faces)); 5900a4158a15SMatthew G. Knepley PetscCall(ISCreateGeneral(PETSC_COMM_SELF, 1 * cellChunkSize, faces, PETSC_USE_POINTER, &chunkIS)); 590107218a29SMatthew G. Knepley /* Extract field coefficients */ 590207218a29SMatthew G. Knepley /* NOTE This needs the end cap faces to have identical orientations */ 590307218a29SMatthew G. Knepley PetscCall(DMPlexGetHybridCellFields(dm, cellIS, locX, locX_t, locA[2], &u, &u_t, &a[2])); 590407218a29SMatthew G. Knepley PetscCall(DMPlexGetHybridFields(dm, dmAux, dsAux, cellIS, locA, PETSC_TRUE, a)); 59058bf0a22dSMatthew G. Knepley PetscCall(DMPlexGetHybridFields(dm, dmScale, dsScale, cellIS, locS, PETSC_TRUE, s)); 590607218a29SMatthew G. Knepley PetscCall(DMGetWorkArray(dm, hasBdJac ? cellChunkSize * totDim * totDim : 0, MPIU_SCALAR, &elemMatNeg)); 590707218a29SMatthew G. Knepley PetscCall(DMGetWorkArray(dm, hasBdJac ? cellChunkSize * totDim * totDim : 0, MPIU_SCALAR, &elemMatPos)); 590807218a29SMatthew G. Knepley PetscCall(DMGetWorkArray(dm, hasBdJac ? cellChunkSize * totDim * totDim : 0, MPIU_SCALAR, &elemMatCoh)); 590907218a29SMatthew G. Knepley PetscCall(DMGetWorkArray(dm, hasBdPrec ? cellChunkSize * totDim * totDim : 0, MPIU_SCALAR, &elemMatNegP)); 591007218a29SMatthew G. Knepley PetscCall(DMGetWorkArray(dm, hasBdPrec ? cellChunkSize * totDim * totDim : 0, MPIU_SCALAR, &elemMatPosP)); 591107218a29SMatthew G. Knepley PetscCall(DMGetWorkArray(dm, hasBdPrec ? cellChunkSize * totDim * totDim : 0, MPIU_SCALAR, &elemMatCohP)); 59123e9753d6SMatthew G. Knepley for (chunk = 0; chunk < numChunks; ++chunk) { 59133e9753d6SMatthew G. Knepley PetscInt cS = cStart + chunk * cellChunkSize, cE = PetscMin(cS + cellChunkSize, cEnd), numCells = cE - cS, c; 59143e9753d6SMatthew G. Knepley 591507218a29SMatthew G. Knepley if (hasBdJac) { 591607218a29SMatthew G. Knepley PetscCall(PetscArrayzero(elemMatNeg, cellChunkSize * totDim * totDim)); 591707218a29SMatthew G. Knepley PetscCall(PetscArrayzero(elemMatPos, cellChunkSize * totDim * totDim)); 591807218a29SMatthew G. Knepley PetscCall(PetscArrayzero(elemMatCoh, cellChunkSize * totDim * totDim)); 591907218a29SMatthew G. Knepley } 592007218a29SMatthew G. Knepley if (hasBdPrec) { 592107218a29SMatthew G. Knepley PetscCall(PetscArrayzero(elemMatNegP, cellChunkSize * totDim * totDim)); 592207218a29SMatthew G. Knepley PetscCall(PetscArrayzero(elemMatPosP, cellChunkSize * totDim * totDim)); 592307218a29SMatthew G. Knepley PetscCall(PetscArrayzero(elemMatCohP, cellChunkSize * totDim * totDim)); 592407218a29SMatthew G. Knepley } 59253e9753d6SMatthew G. Knepley /* Get faces */ 59263e9753d6SMatthew G. Knepley for (c = cS; c < cE; ++c) { 59273e9753d6SMatthew G. Knepley const PetscInt cell = cells ? cells[c] : c; 59283e9753d6SMatthew G. Knepley const PetscInt *cone; 59299566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(plex, cell, &cone)); 593007218a29SMatthew G. Knepley faces[(c - cS) * 2 + 0] = cone[0]; 593107218a29SMatthew G. Knepley faces[(c - cS) * 2 + 1] = cone[1]; 59323e9753d6SMatthew G. Knepley } 593307218a29SMatthew G. Knepley PetscCall(ISGeneralSetIndices(chunkIS, 2 * cellChunkSize, faces, PETSC_USE_POINTER)); 59343e9753d6SMatthew G. Knepley if (maxDegree <= 1) { 59359566063dSJacob Faibussowitsch if (!affineQuad) PetscCall(DMFieldCreateDefaultQuadrature(coordField, chunkIS, &affineQuad)); 59369566063dSJacob Faibussowitsch if (affineQuad) PetscCall(DMSNESGetFEGeom(coordField, chunkIS, affineQuad, PETSC_TRUE, &affineGeom)); 59373e9753d6SMatthew G. Knepley } else { 59383e9753d6SMatthew G. Knepley PetscInt f; 59393e9753d6SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 59409566063dSJacob Faibussowitsch if (quads[f]) PetscCall(DMSNESGetFEGeom(coordField, chunkIS, quads[f], PETSC_TRUE, &geoms[f])); 59413e9753d6SMatthew G. Knepley } 59423e9753d6SMatthew G. Knepley } 59433e9753d6SMatthew G. Knepley 59443e9753d6SMatthew G. Knepley for (fieldI = 0; fieldI < Nf; ++fieldI) { 59453e9753d6SMatthew G. Knepley PetscFE feI; 59463e9753d6SMatthew G. Knepley PetscFEGeom *geom = affineGeom ? affineGeom : geoms[fieldI]; 59473e9753d6SMatthew G. Knepley PetscFEGeom *chunkGeom = NULL, *remGeom = NULL; 59483e9753d6SMatthew G. Knepley PetscQuadrature quad = affineQuad ? affineQuad : quads[fieldI]; 59493e9753d6SMatthew G. Knepley PetscInt numChunks, numBatches, batchSize, numBlocks, blockSize, Ne, Nr, offset, Nq, Nb; 59505fedec97SMatthew G. Knepley PetscBool isCohesiveField; 59513e9753d6SMatthew G. Knepley 59529566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(ds, fieldI, (PetscObject *)&feI)); 59533e9753d6SMatthew G. Knepley if (!feI) continue; 59549566063dSJacob Faibussowitsch PetscCall(PetscFEGetTileSizes(feI, NULL, &numBlocks, NULL, &numBatches)); 59559566063dSJacob Faibussowitsch PetscCall(PetscQuadratureGetData(quad, NULL, NULL, &Nq, NULL, NULL)); 59569566063dSJacob Faibussowitsch PetscCall(PetscFEGetDimension(feI, &Nb)); 59573e9753d6SMatthew G. Knepley blockSize = Nb; 59583e9753d6SMatthew G. Knepley batchSize = numBlocks * blockSize; 59599566063dSJacob Faibussowitsch PetscCall(PetscFESetTileSizes(feI, blockSize, numBlocks, batchSize, numBatches)); 59603e9753d6SMatthew G. Knepley numChunks = numCells / (numBatches * batchSize); 59613e9753d6SMatthew G. Knepley Ne = numChunks * numBatches * batchSize; 59623e9753d6SMatthew G. Knepley Nr = numCells % (numBatches * batchSize); 59633e9753d6SMatthew G. Knepley offset = numCells - Nr; 596407218a29SMatthew G. Knepley PetscCall(PetscFEGeomGetChunk(geom, 0, offset * 2, &chunkGeom)); 596507218a29SMatthew G. Knepley PetscCall(PetscFEGeomGetChunk(geom, offset * 2, numCells * 2, &remGeom)); 59669566063dSJacob Faibussowitsch PetscCall(PetscDSGetCohesive(ds, fieldI, &isCohesiveField)); 59673e9753d6SMatthew G. Knepley for (fieldJ = 0; fieldJ < Nf; ++fieldJ) { 59683e9753d6SMatthew G. Knepley PetscFE feJ; 59693e9753d6SMatthew G. Knepley 59709566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(ds, fieldJ, (PetscObject *)&feJ)); 59713e9753d6SMatthew G. Knepley if (!feJ) continue; 5972148442b3SMatthew G. Knepley key[0].field = fieldI * Nf + fieldJ; 5973148442b3SMatthew G. Knepley key[1].field = fieldI * Nf + fieldJ; 59745fedec97SMatthew G. Knepley key[2].field = fieldI * Nf + fieldJ; 5975148442b3SMatthew G. Knepley if (hasBdJac) { 597607218a29SMatthew G. Knepley PetscCall(PetscFEIntegrateHybridJacobian(ds, dsIn, PETSCFE_JACOBIAN, key[0], 0, Ne, chunkGeom, u, u_t, dsAux[0], a[0], t, X_tShift, elemMatNeg)); 597707218a29SMatthew G. Knepley PetscCall(PetscFEIntegrateHybridJacobian(ds, dsIn, PETSCFE_JACOBIAN, key[0], 0, Nr, remGeom, &u[offset * totDimIn], u_t ? &u_t[offset * totDimIn] : NULL, dsAux[0], &a[0][offset * totDimAux[0]], t, X_tShift, &elemMatNeg[offset * totDim * totDim])); 597807218a29SMatthew G. Knepley PetscCall(PetscFEIntegrateHybridJacobian(ds, dsIn, PETSCFE_JACOBIAN, key[1], 1, Ne, chunkGeom, u, u_t, dsAux[1], a[1], t, X_tShift, elemMatPos)); 597907218a29SMatthew G. Knepley PetscCall(PetscFEIntegrateHybridJacobian(ds, dsIn, PETSCFE_JACOBIAN, key[1], 1, Nr, remGeom, &u[offset * totDimIn], u_t ? &u_t[offset * totDimIn] : NULL, dsAux[1], &a[1][offset * totDimAux[1]], t, X_tShift, &elemMatPos[offset * totDim * totDim])); 5980148442b3SMatthew G. Knepley } 5981148442b3SMatthew G. Knepley if (hasBdPrec) { 598207218a29SMatthew G. Knepley PetscCall(PetscFEIntegrateHybridJacobian(ds, dsIn, PETSCFE_JACOBIAN_PRE, key[0], 0, Ne, chunkGeom, u, u_t, dsAux[0], a[0], t, X_tShift, elemMatNegP)); 598307218a29SMatthew G. Knepley PetscCall(PetscFEIntegrateHybridJacobian(ds, dsIn, PETSCFE_JACOBIAN_PRE, key[0], 0, Nr, remGeom, &u[offset * totDimIn], u_t ? &u_t[offset * totDimIn] : NULL, dsAux[0], &a[0][offset * totDimAux[0]], t, X_tShift, &elemMatNegP[offset * totDim * totDim])); 598407218a29SMatthew G. Knepley PetscCall(PetscFEIntegrateHybridJacobian(ds, dsIn, PETSCFE_JACOBIAN_PRE, key[1], 1, Ne, chunkGeom, u, u_t, dsAux[1], a[1], t, X_tShift, elemMatPosP)); 598507218a29SMatthew G. Knepley PetscCall(PetscFEIntegrateHybridJacobian(ds, dsIn, PETSCFE_JACOBIAN_PRE, key[1], 1, Nr, remGeom, &u[offset * totDimIn], u_t ? &u_t[offset * totDimIn] : NULL, dsAux[1], &a[1][offset * totDimAux[1]], t, X_tShift, &elemMatPosP[offset * totDim * totDim])); 5986148442b3SMatthew G. Knepley } 59875fedec97SMatthew G. Knepley if (hasBdJac) { 598807218a29SMatthew G. Knepley PetscCall(PetscFEIntegrateHybridJacobian(ds, dsIn, PETSCFE_JACOBIAN, key[2], 2, Ne, chunkGeom, u, u_t, dsAux[2], a[2], t, X_tShift, elemMatCoh)); 598907218a29SMatthew G. Knepley PetscCall(PetscFEIntegrateHybridJacobian(ds, dsIn, PETSCFE_JACOBIAN, key[2], 2, Nr, remGeom, &u[offset * totDimIn], u_t ? &u_t[offset * totDimIn] : NULL, dsAux[2], &a[2][offset * totDimAux[2]], t, X_tShift, &elemMatCoh[offset * totDim * totDim])); 5990148442b3SMatthew G. Knepley } 59915fedec97SMatthew G. Knepley if (hasBdPrec) { 599207218a29SMatthew G. Knepley PetscCall(PetscFEIntegrateHybridJacobian(ds, dsIn, PETSCFE_JACOBIAN_PRE, key[2], 2, Ne, chunkGeom, u, u_t, dsAux[2], a[2], t, X_tShift, elemMatCohP)); 599307218a29SMatthew G. Knepley PetscCall(PetscFEIntegrateHybridJacobian(ds, dsIn, PETSCFE_JACOBIAN_PRE, key[2], 2, Nr, remGeom, &u[offset * totDimIn], u_t ? &u_t[offset * totDimIn] : NULL, dsAux[2], &a[2][offset * totDimAux[2]], t, X_tShift, &elemMatCohP[offset * totDim * totDim])); 59943e9753d6SMatthew G. Knepley } 59953e9753d6SMatthew G. Knepley } 59969566063dSJacob Faibussowitsch PetscCall(PetscFEGeomRestoreChunk(geom, offset, numCells, &remGeom)); 59979566063dSJacob Faibussowitsch PetscCall(PetscFEGeomRestoreChunk(geom, 0, offset, &chunkGeom)); 59983e9753d6SMatthew G. Knepley } 59993e9753d6SMatthew G. Knepley /* Insert values into matrix */ 60003e9753d6SMatthew G. Knepley for (c = cS; c < cE; ++c) { 60013e9753d6SMatthew G. Knepley const PetscInt cell = cells ? cells[c] : c; 600207218a29SMatthew G. Knepley const PetscInt cind = c - cS, coff = cind * totDim * totDim; 600307218a29SMatthew G. Knepley PetscInt i, j; 60043e9753d6SMatthew G. Knepley 600507218a29SMatthew G. Knepley /* Scale element values */ 600607218a29SMatthew G. Knepley if (locS[0]) { 60073e2b0218SMatthew G. Knepley PetscInt Nb, soff = cind * totDimScale[0], off = 0; 600807218a29SMatthew G. Knepley PetscBool cohesive; 600907218a29SMatthew G. Knepley 601007218a29SMatthew G. Knepley for (fieldI = 0; fieldI < Nf; ++fieldI) { 601107218a29SMatthew G. Knepley PetscCall(PetscDSGetFieldSize(ds, fieldI, &Nb)); 601207218a29SMatthew G. Knepley PetscCall(PetscDSGetCohesive(ds, fieldI, &cohesive)); 601307218a29SMatthew G. Knepley 601407218a29SMatthew G. Knepley if (fieldI == key[2].field) { 601507218a29SMatthew G. Knepley PetscCheck(cohesive, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Scaling should not happen for face fields"); 60168bf0a22dSMatthew G. Knepley for (i = 0; i < Nb; ++i) { 601707218a29SMatthew G. Knepley for (j = 0; j < totDim; ++j) elemMatCoh[coff + (off + i) * totDim + j] += s[0][soff + i] * elemMatNeg[coff + (off + i) * totDim + j] + s[1][soff + i] * elemMatPos[coff + (off + i) * totDim + j]; 60188bf0a22dSMatthew G. Knepley if (hasBdPrec) 60198bf0a22dSMatthew G. Knepley for (j = 0; j < totDim; ++j) elemMatCohP[coff + (off + i) * totDim + j] += s[0][soff + i] * elemMatNegP[coff + (off + i) * totDim + j] + s[1][soff + i] * elemMatPosP[coff + (off + i) * totDim + j]; 60208bf0a22dSMatthew G. Knepley } 602107218a29SMatthew G. Knepley off += Nb; 602207218a29SMatthew G. Knepley } else { 602307218a29SMatthew G. Knepley const PetscInt N = cohesive ? Nb : Nb * 2; 602407218a29SMatthew G. Knepley 60258bf0a22dSMatthew G. Knepley for (i = 0; i < N; ++i) { 602607218a29SMatthew G. Knepley for (j = 0; j < totDim; ++j) elemMatCoh[coff + (off + i) * totDim + j] += elemMatNeg[coff + (off + i) * totDim + j] + elemMatPos[coff + (off + i) * totDim + j]; 60278bf0a22dSMatthew G. Knepley if (hasBdPrec) 60288bf0a22dSMatthew G. Knepley for (j = 0; j < totDim; ++j) elemMatCohP[coff + (off + i) * totDim + j] += elemMatNegP[coff + (off + i) * totDim + j] + elemMatPosP[coff + (off + i) * totDim + j]; 60298bf0a22dSMatthew G. Knepley } 603007218a29SMatthew G. Knepley off += N; 603107218a29SMatthew G. Knepley } 603207218a29SMatthew G. Knepley } 603307218a29SMatthew G. Knepley } else { 603407218a29SMatthew G. Knepley for (i = 0; i < totDim * totDim; ++i) elemMatCoh[coff + i] += elemMatNeg[coff + i] + elemMatPos[coff + i]; 60358bf0a22dSMatthew G. Knepley if (hasBdPrec) 60368bf0a22dSMatthew G. Knepley for (i = 0; i < totDim * totDim; ++i) elemMatCohP[coff + i] += elemMatNegP[coff + i] + elemMatPosP[coff + i]; 603707218a29SMatthew G. Knepley } 60383e9753d6SMatthew G. Knepley if (hasBdPrec) { 60393e9753d6SMatthew G. Knepley if (hasBdJac) { 604007218a29SMatthew G. Knepley if (mesh->printFEM > 1) PetscCall(DMPrintCellMatrix(cell, name, totDim, totDim, &elemMatCoh[cind * totDim * totDim])); 604107218a29SMatthew G. Knepley PetscCall(DMPlexMatSetClosure(plex, section, globalSection, Jac, cell, &elemMatCoh[cind * totDim * totDim], ADD_VALUES)); 60423e9753d6SMatthew G. Knepley } 604307218a29SMatthew G. Knepley if (mesh->printFEM > 1) PetscCall(DMPrintCellMatrix(cell, name, totDim, totDim, &elemMatCohP[cind * totDim * totDim])); 604407218a29SMatthew G. Knepley PetscCall(DMPlexMatSetClosure(plex, section, globalSection, JacP, cell, &elemMatCohP[cind * totDim * totDim], ADD_VALUES)); 60453e9753d6SMatthew G. Knepley } else if (hasBdJac) { 604607218a29SMatthew G. Knepley if (mesh->printFEM > 1) PetscCall(DMPrintCellMatrix(cell, name, totDim, totDim, &elemMatCoh[cind * totDim * totDim])); 604707218a29SMatthew G. Knepley PetscCall(DMPlexMatSetClosure(plex, section, globalSection, JacP, cell, &elemMatCoh[cind * totDim * totDim], ADD_VALUES)); 60483e9753d6SMatthew G. Knepley } 60493e9753d6SMatthew G. Knepley } 60503e9753d6SMatthew G. Knepley } 60519566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreCellFields(dm, cellIS, locX, locX_t, locA[2], &u, &u_t, &a[2])); 605207218a29SMatthew G. Knepley PetscCall(DMPlexRestoreHybridFields(dm, dmAux, dsAux, cellIS, locA, PETSC_TRUE, a)); 605307218a29SMatthew G. Knepley PetscCall(DMRestoreWorkArray(dm, hasBdJac ? cellChunkSize * totDim * totDim : 0, MPIU_SCALAR, &elemMatNeg)); 605407218a29SMatthew G. Knepley PetscCall(DMRestoreWorkArray(dm, hasBdJac ? cellChunkSize * totDim * totDim : 0, MPIU_SCALAR, &elemMatPos)); 605507218a29SMatthew G. Knepley PetscCall(DMRestoreWorkArray(dm, hasBdJac ? cellChunkSize * totDim * totDim : 0, MPIU_SCALAR, &elemMatCoh)); 605607218a29SMatthew G. Knepley PetscCall(DMRestoreWorkArray(dm, hasBdPrec ? cellChunkSize * totDim * totDim : 0, MPIU_SCALAR, &elemMatNegP)); 605707218a29SMatthew G. Knepley PetscCall(DMRestoreWorkArray(dm, hasBdPrec ? cellChunkSize * totDim * totDim : 0, MPIU_SCALAR, &elemMatPosP)); 605807218a29SMatthew G. Knepley PetscCall(DMRestoreWorkArray(dm, hasBdPrec ? cellChunkSize * totDim * totDim : 0, MPIU_SCALAR, &elemMatCohP)); 60599566063dSJacob Faibussowitsch PetscCall(PetscFree(faces)); 60609566063dSJacob Faibussowitsch PetscCall(ISDestroy(&chunkIS)); 60619566063dSJacob Faibussowitsch PetscCall(ISRestorePointRange(cellIS, &cStart, &cEnd, &cells)); 60623e9753d6SMatthew G. Knepley if (maxDegree <= 1) { 60639566063dSJacob Faibussowitsch PetscCall(DMSNESRestoreFEGeom(coordField, cellIS, affineQuad, PETSC_FALSE, &affineGeom)); 60649566063dSJacob Faibussowitsch PetscCall(PetscQuadratureDestroy(&affineQuad)); 60653e9753d6SMatthew G. Knepley } else { 60663e9753d6SMatthew G. Knepley PetscInt f; 60673e9753d6SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 60689566063dSJacob Faibussowitsch if (geoms) PetscCall(DMSNESRestoreFEGeom(coordField, cellIS, quads[f], PETSC_FALSE, &geoms[f])); 60699566063dSJacob Faibussowitsch if (quads) PetscCall(PetscQuadratureDestroy(&quads[f])); 60703e9753d6SMatthew G. Knepley } 60719566063dSJacob Faibussowitsch PetscCall(PetscFree2(quads, geoms)); 60723e9753d6SMatthew G. Knepley } 60739566063dSJacob Faibussowitsch if (dmAux[2]) PetscCall(DMDestroy(&plexA)); 60749566063dSJacob Faibussowitsch PetscCall(DMDestroy(&plex)); 60759566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DMPLEX_JacobianFEM, dm, 0, 0, 0)); 60763ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 60773e9753d6SMatthew G. Knepley } 60788e3a2eefSMatthew G. Knepley 60798e3a2eefSMatthew G. Knepley /* 60808e3a2eefSMatthew G. Knepley DMPlexComputeJacobian_Action_Internal - Form the local portion of the Jacobian action Z = J(X) Y at the local solution X using pointwise functions specified by the user. 60818e3a2eefSMatthew G. Knepley 60828e3a2eefSMatthew G. Knepley Input Parameters: 60838e3a2eefSMatthew G. Knepley + dm - The mesh 60848e3a2eefSMatthew G. Knepley . key - The PetscWeakFormKey indcating where integration should happen 608506ad1575SMatthew G. Knepley . cellIS - The cells to integrate over 60868e3a2eefSMatthew G. Knepley . t - The time 6087145b44c9SPierre Jolivet . X_tShift - The multiplier for the Jacobian with respect to X_t 60888e3a2eefSMatthew G. Knepley . X - Local solution vector 60898e3a2eefSMatthew G. Knepley . X_t - Time-derivative of the local solution vector 60908e3a2eefSMatthew G. Knepley . Y - Local input vector 609106ad1575SMatthew G. Knepley - user - the user context 60928e3a2eefSMatthew G. Knepley 60938e3a2eefSMatthew G. Knepley Output Parameter: 60948e3a2eefSMatthew G. Knepley . Z - Local output vector 60958e3a2eefSMatthew G. Knepley 60968e3a2eefSMatthew G. Knepley Note: 60978e3a2eefSMatthew G. Knepley We form the residual one batch of elements at a time. This allows us to offload work onto an accelerator, 60988e3a2eefSMatthew G. Knepley like a GPU, or vectorize on a multicore machine. 60998e3a2eefSMatthew G. Knepley */ 6100d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeJacobian_Action_Internal(DM dm, PetscFormKey key, IS cellIS, PetscReal t, PetscReal X_tShift, Vec X, Vec X_t, Vec Y, Vec Z, void *user) 6101d71ae5a4SJacob Faibussowitsch { 61028e3a2eefSMatthew G. Knepley DM_Plex *mesh = (DM_Plex *)dm->data; 61038e3a2eefSMatthew G. Knepley const char *name = "Jacobian"; 61048e3a2eefSMatthew G. Knepley DM dmAux = NULL, plex, plexAux = NULL; 61058e3a2eefSMatthew G. Knepley DMEnclosureType encAux; 61068e3a2eefSMatthew G. Knepley Vec A; 61078e3a2eefSMatthew G. Knepley DMField coordField; 61088e3a2eefSMatthew G. Knepley PetscDS prob, probAux = NULL; 61098e3a2eefSMatthew G. Knepley PetscQuadrature quad; 61108e3a2eefSMatthew G. Knepley PetscSection section, globalSection, sectionAux; 61118e3a2eefSMatthew G. Knepley PetscScalar *elemMat, *elemMatD, *u, *u_t, *a = NULL, *y, *z; 61128e3a2eefSMatthew G. Knepley const PetscInt *cells; 61138e3a2eefSMatthew G. Knepley PetscInt Nf, fieldI, fieldJ; 61148e3a2eefSMatthew G. Knepley PetscInt totDim, totDimAux = 0, cStart, cEnd, numCells, c; 61158e3a2eefSMatthew G. Knepley PetscBool hasDyn; 61168e3a2eefSMatthew G. Knepley 61178e3a2eefSMatthew G. Knepley PetscFunctionBegin; 611821d77094SMatthew G. Knepley if (!cellIS) PetscFunctionReturn(PETSC_SUCCESS); 61199566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DMPLEX_JacobianFEM, dm, 0, 0, 0)); 61209566063dSJacob Faibussowitsch PetscCall(DMConvert(dm, DMPLEX, &plex)); 61219566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(cellIS, &numCells)); 61229566063dSJacob Faibussowitsch PetscCall(ISGetPointRange(cellIS, &cStart, &cEnd, &cells)); 61239566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, §ion)); 61249566063dSJacob Faibussowitsch PetscCall(DMGetGlobalSection(dm, &globalSection)); 612507218a29SMatthew G. Knepley PetscCall(DMGetCellDS(dm, cells ? cells[cStart] : cStart, &prob, NULL)); 61269566063dSJacob Faibussowitsch PetscCall(PetscDSGetNumFields(prob, &Nf)); 61279566063dSJacob Faibussowitsch PetscCall(PetscDSGetTotalDimension(prob, &totDim)); 61289566063dSJacob Faibussowitsch PetscCall(PetscDSHasDynamicJacobian(prob, &hasDyn)); 61298e3a2eefSMatthew G. Knepley hasDyn = hasDyn && (X_tShift != 0.0) ? PETSC_TRUE : PETSC_FALSE; 61309566063dSJacob Faibussowitsch PetscCall(DMGetAuxiliaryVec(dm, key.label, key.value, key.part, &A)); 61318e3a2eefSMatthew G. Knepley if (A) { 61329566063dSJacob Faibussowitsch PetscCall(VecGetDM(A, &dmAux)); 61339566063dSJacob Faibussowitsch PetscCall(DMGetEnclosureRelation(dmAux, dm, &encAux)); 61349566063dSJacob Faibussowitsch PetscCall(DMConvert(dmAux, DMPLEX, &plexAux)); 61359566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(plexAux, §ionAux)); 61369566063dSJacob Faibussowitsch PetscCall(DMGetDS(dmAux, &probAux)); 61379566063dSJacob Faibussowitsch PetscCall(PetscDSGetTotalDimension(probAux, &totDimAux)); 61388e3a2eefSMatthew G. Knepley } 61399566063dSJacob Faibussowitsch PetscCall(VecSet(Z, 0.0)); 61409566063dSJacob Faibussowitsch PetscCall(PetscMalloc6(numCells * totDim, &u, X_t ? numCells * totDim : 0, &u_t, numCells * totDim * totDim, &elemMat, hasDyn ? numCells * totDim * totDim : 0, &elemMatD, numCells * totDim, &y, totDim, &z)); 61419566063dSJacob Faibussowitsch if (dmAux) PetscCall(PetscMalloc1(numCells * totDimAux, &a)); 61429566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateField(dm, &coordField)); 61438e3a2eefSMatthew G. Knepley for (c = cStart; c < cEnd; ++c) { 61448e3a2eefSMatthew G. Knepley const PetscInt cell = cells ? cells[c] : c; 61458e3a2eefSMatthew G. Knepley const PetscInt cind = c - cStart; 61468e3a2eefSMatthew G. Knepley PetscScalar *x = NULL, *x_t = NULL; 61478e3a2eefSMatthew G. Knepley PetscInt i; 61488e3a2eefSMatthew G. Knepley 61499566063dSJacob Faibussowitsch PetscCall(DMPlexVecGetClosure(plex, section, X, cell, NULL, &x)); 61508e3a2eefSMatthew G. Knepley for (i = 0; i < totDim; ++i) u[cind * totDim + i] = x[i]; 61519566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(plex, section, X, cell, NULL, &x)); 61528e3a2eefSMatthew G. Knepley if (X_t) { 61539566063dSJacob Faibussowitsch PetscCall(DMPlexVecGetClosure(plex, section, X_t, cell, NULL, &x_t)); 61548e3a2eefSMatthew G. Knepley for (i = 0; i < totDim; ++i) u_t[cind * totDim + i] = x_t[i]; 61559566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(plex, section, X_t, cell, NULL, &x_t)); 61568e3a2eefSMatthew G. Knepley } 61578e3a2eefSMatthew G. Knepley if (dmAux) { 61588e3a2eefSMatthew G. Knepley PetscInt subcell; 61599566063dSJacob Faibussowitsch PetscCall(DMGetEnclosurePoint(dmAux, dm, encAux, cell, &subcell)); 61609566063dSJacob Faibussowitsch PetscCall(DMPlexVecGetClosure(plexAux, sectionAux, A, subcell, NULL, &x)); 61618e3a2eefSMatthew G. Knepley for (i = 0; i < totDimAux; ++i) a[cind * totDimAux + i] = x[i]; 61629566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(plexAux, sectionAux, A, subcell, NULL, &x)); 61638e3a2eefSMatthew G. Knepley } 61649566063dSJacob Faibussowitsch PetscCall(DMPlexVecGetClosure(plex, section, Y, cell, NULL, &x)); 61658e3a2eefSMatthew G. Knepley for (i = 0; i < totDim; ++i) y[cind * totDim + i] = x[i]; 61669566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(plex, section, Y, cell, NULL, &x)); 61678e3a2eefSMatthew G. Knepley } 61689566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(elemMat, numCells * totDim * totDim)); 61699566063dSJacob Faibussowitsch if (hasDyn) PetscCall(PetscArrayzero(elemMatD, numCells * totDim * totDim)); 61708e3a2eefSMatthew G. Knepley for (fieldI = 0; fieldI < Nf; ++fieldI) { 61718e3a2eefSMatthew G. Knepley PetscFE fe; 61728e3a2eefSMatthew G. Knepley PetscInt Nb; 61738e3a2eefSMatthew G. Knepley /* Conforming batches */ 61748e3a2eefSMatthew G. Knepley PetscInt numChunks, numBatches, numBlocks, Ne, blockSize, batchSize; 61758e3a2eefSMatthew G. Knepley /* Remainder */ 61768e3a2eefSMatthew G. Knepley PetscInt Nr, offset, Nq; 61778e3a2eefSMatthew G. Knepley PetscQuadrature qGeom = NULL; 61788e3a2eefSMatthew G. Knepley PetscInt maxDegree; 61798e3a2eefSMatthew G. Knepley PetscFEGeom *cgeomFEM, *chunkGeom = NULL, *remGeom = NULL; 61808e3a2eefSMatthew G. Knepley 61819566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(prob, fieldI, (PetscObject *)&fe)); 61829566063dSJacob Faibussowitsch PetscCall(PetscFEGetQuadrature(fe, &quad)); 61839566063dSJacob Faibussowitsch PetscCall(PetscFEGetDimension(fe, &Nb)); 61849566063dSJacob Faibussowitsch PetscCall(PetscFEGetTileSizes(fe, NULL, &numBlocks, NULL, &numBatches)); 61859566063dSJacob Faibussowitsch PetscCall(DMFieldGetDegree(coordField, cellIS, NULL, &maxDegree)); 61869566063dSJacob Faibussowitsch if (maxDegree <= 1) PetscCall(DMFieldCreateDefaultQuadrature(coordField, cellIS, &qGeom)); 61878e3a2eefSMatthew G. Knepley if (!qGeom) { 61889566063dSJacob Faibussowitsch PetscCall(PetscFEGetQuadrature(fe, &qGeom)); 61899566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)qGeom)); 61908e3a2eefSMatthew G. Knepley } 61919566063dSJacob Faibussowitsch PetscCall(PetscQuadratureGetData(qGeom, NULL, NULL, &Nq, NULL, NULL)); 61929566063dSJacob Faibussowitsch PetscCall(DMSNESGetFEGeom(coordField, cellIS, qGeom, PETSC_FALSE, &cgeomFEM)); 61938e3a2eefSMatthew G. Knepley blockSize = Nb; 61948e3a2eefSMatthew G. Knepley batchSize = numBlocks * blockSize; 61959566063dSJacob Faibussowitsch PetscCall(PetscFESetTileSizes(fe, blockSize, numBlocks, batchSize, numBatches)); 61968e3a2eefSMatthew G. Knepley numChunks = numCells / (numBatches * batchSize); 61978e3a2eefSMatthew G. Knepley Ne = numChunks * numBatches * batchSize; 61988e3a2eefSMatthew G. Knepley Nr = numCells % (numBatches * batchSize); 61998e3a2eefSMatthew G. Knepley offset = numCells - Nr; 62009566063dSJacob Faibussowitsch PetscCall(PetscFEGeomGetChunk(cgeomFEM, 0, offset, &chunkGeom)); 62019566063dSJacob Faibussowitsch PetscCall(PetscFEGeomGetChunk(cgeomFEM, offset, numCells, &remGeom)); 62028e3a2eefSMatthew G. Knepley for (fieldJ = 0; fieldJ < Nf; ++fieldJ) { 62038e3a2eefSMatthew G. Knepley key.field = fieldI * Nf + fieldJ; 62049566063dSJacob Faibussowitsch PetscCall(PetscFEIntegrateJacobian(prob, PETSCFE_JACOBIAN, key, Ne, chunkGeom, u, u_t, probAux, a, t, X_tShift, elemMat)); 62059566063dSJacob Faibussowitsch PetscCall(PetscFEIntegrateJacobian(prob, PETSCFE_JACOBIAN, key, Nr, remGeom, &u[offset * totDim], u_t ? &u_t[offset * totDim] : NULL, probAux, &a[offset * totDimAux], t, X_tShift, &elemMat[offset * totDim * totDim])); 62068e3a2eefSMatthew G. Knepley if (hasDyn) { 62079566063dSJacob Faibussowitsch PetscCall(PetscFEIntegrateJacobian(prob, PETSCFE_JACOBIAN_DYN, key, Ne, chunkGeom, u, u_t, probAux, a, t, X_tShift, elemMatD)); 62089566063dSJacob Faibussowitsch PetscCall(PetscFEIntegrateJacobian(prob, PETSCFE_JACOBIAN_DYN, key, Nr, remGeom, &u[offset * totDim], u_t ? &u_t[offset * totDim] : NULL, probAux, &a[offset * totDimAux], t, X_tShift, &elemMatD[offset * totDim * totDim])); 62098e3a2eefSMatthew G. Knepley } 62108e3a2eefSMatthew G. Knepley } 62119566063dSJacob Faibussowitsch PetscCall(PetscFEGeomRestoreChunk(cgeomFEM, offset, numCells, &remGeom)); 62129566063dSJacob Faibussowitsch PetscCall(PetscFEGeomRestoreChunk(cgeomFEM, 0, offset, &chunkGeom)); 62139566063dSJacob Faibussowitsch PetscCall(DMSNESRestoreFEGeom(coordField, cellIS, qGeom, PETSC_FALSE, &cgeomFEM)); 62149566063dSJacob Faibussowitsch PetscCall(PetscQuadratureDestroy(&qGeom)); 62158e3a2eefSMatthew G. Knepley } 62168e3a2eefSMatthew G. Knepley if (hasDyn) { 62178e3a2eefSMatthew G. Knepley for (c = 0; c < numCells * totDim * totDim; ++c) elemMat[c] += X_tShift * elemMatD[c]; 62188e3a2eefSMatthew G. Knepley } 62198e3a2eefSMatthew G. Knepley for (c = cStart; c < cEnd; ++c) { 62208e3a2eefSMatthew G. Knepley const PetscInt cell = cells ? cells[c] : c; 62218e3a2eefSMatthew G. Knepley const PetscInt cind = c - cStart; 62228e3a2eefSMatthew G. Knepley const PetscBLASInt M = totDim, one = 1; 62238e3a2eefSMatthew G. Knepley const PetscScalar a = 1.0, b = 0.0; 62248e3a2eefSMatthew G. Knepley 6225792fecdfSBarry Smith PetscCallBLAS("BLASgemv", BLASgemv_("N", &M, &M, &a, &elemMat[cind * totDim * totDim], &M, &y[cind * totDim], &one, &b, z, &one)); 62268e3a2eefSMatthew G. Knepley if (mesh->printFEM > 1) { 62279566063dSJacob Faibussowitsch PetscCall(DMPrintCellMatrix(c, name, totDim, totDim, &elemMat[cind * totDim * totDim])); 62289566063dSJacob Faibussowitsch PetscCall(DMPrintCellVector(c, "Y", totDim, &y[cind * totDim])); 62299566063dSJacob Faibussowitsch PetscCall(DMPrintCellVector(c, "Z", totDim, z)); 62308e3a2eefSMatthew G. Knepley } 62319566063dSJacob Faibussowitsch PetscCall(DMPlexVecSetClosure(dm, section, Z, cell, z, ADD_VALUES)); 62328e3a2eefSMatthew G. Knepley } 62339566063dSJacob Faibussowitsch PetscCall(PetscFree6(u, u_t, elemMat, elemMatD, y, z)); 62348e3a2eefSMatthew G. Knepley if (mesh->printFEM) { 62359566063dSJacob Faibussowitsch PetscCall(PetscPrintf(PetscObjectComm((PetscObject)Z), "Z:\n")); 62369566063dSJacob Faibussowitsch PetscCall(VecView(Z, NULL)); 62378e3a2eefSMatthew G. Knepley } 62381059d808SMatthew G. Knepley PetscCall(ISRestorePointRange(cellIS, &cStart, &cEnd, &cells)); 62399566063dSJacob Faibussowitsch PetscCall(PetscFree(a)); 62409566063dSJacob Faibussowitsch PetscCall(DMDestroy(&plexAux)); 62419566063dSJacob Faibussowitsch PetscCall(DMDestroy(&plex)); 62429566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DMPLEX_JacobianFEM, dm, 0, 0, 0)); 62433ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 62448e3a2eefSMatthew G. Knepley } 6245