xref: /petsc/src/dm/impls/plex/plexfem.c (revision a4e35b1925eceef64945ea472b84f2bf06a67b5e)
1af0996ceSBarry Smith #include <petsc/private/dmpleximpl.h> /*I      "petscdmplex.h"   I*/
2da97024aSMatthew G. Knepley #include <petscsf.h>
3cb1e1211SMatthew G Knepley 
48e3a2eefSMatthew G. Knepley #include <petscblaslapack.h>
5e8f14785SLisandro Dalcin #include <petsc/private/hashsetij.h>
6af0996ceSBarry Smith #include <petsc/private/petscfeimpl.h>
7af0996ceSBarry Smith #include <petsc/private/petscfvimpl.h>
8a0845e3aSMatthew G. Knepley 
95f0b18bfSMatthew G. Knepley PetscBool  Clementcite       = PETSC_FALSE;
105f0b18bfSMatthew G. Knepley const char ClementCitation[] = "@article{clement1975approximation,\n"
115f0b18bfSMatthew G. Knepley                                "  title   = {Approximation by finite element functions using local regularization},\n"
125f0b18bfSMatthew G. Knepley                                "  author  = {Philippe Cl{\\'e}ment},\n"
135f0b18bfSMatthew G. Knepley                                "  journal = {Revue fran{\\c{c}}aise d'automatique, informatique, recherche op{\\'e}rationnelle. Analyse num{\\'e}rique},\n"
145f0b18bfSMatthew G. Knepley                                "  volume  = {9},\n"
155f0b18bfSMatthew G. Knepley                                "  number  = {R2},\n"
165f0b18bfSMatthew G. Knepley                                "  pages   = {77--84},\n"
175f0b18bfSMatthew G. Knepley                                "  year    = {1975}\n}\n";
185f0b18bfSMatthew G. Knepley 
19d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexConvertPlex(DM dm, DM *plex, PetscBool copy)
20d71ae5a4SJacob Faibussowitsch {
212f856554SMatthew G. Knepley   PetscBool isPlex;
222f856554SMatthew G. Knepley 
232f856554SMatthew G. Knepley   PetscFunctionBegin;
249566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)dm, DMPLEX, &isPlex));
252f856554SMatthew G. Knepley   if (isPlex) {
262f856554SMatthew G. Knepley     *plex = dm;
279566063dSJacob Faibussowitsch     PetscCall(PetscObjectReference((PetscObject)dm));
282f856554SMatthew G. Knepley   } else {
299566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)dm, "dm_plex", (PetscObject *)plex));
302f856554SMatthew G. Knepley     if (!*plex) {
319566063dSJacob Faibussowitsch       PetscCall(DMConvert(dm, DMPLEX, plex));
329566063dSJacob Faibussowitsch       PetscCall(PetscObjectCompose((PetscObject)dm, "dm_plex", (PetscObject)*plex));
332f856554SMatthew G. Knepley       if (copy) {
342f856554SMatthew G. Knepley         DMSubDomainHookLink link;
359a2a23afSMatthew G. Knepley 
369566063dSJacob Faibussowitsch         PetscCall(DMCopyAuxiliaryVec(dm, *plex));
379a2a23afSMatthew G. Knepley         /* Run the subdomain hook (this will copy the DMSNES/DMTS) */
382f856554SMatthew G. Knepley         for (link = dm->subdomainhook; link; link = link->next) {
399566063dSJacob Faibussowitsch           if (link->ddhook) PetscCall((*link->ddhook)(dm, *plex, link->ctx));
402f856554SMatthew G. Knepley         }
412f856554SMatthew G. Knepley       }
422f856554SMatthew G. Knepley     } else {
439566063dSJacob Faibussowitsch       PetscCall(PetscObjectReference((PetscObject)*plex));
442f856554SMatthew G. Knepley     }
452f856554SMatthew G. Knepley   }
463ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
472f856554SMatthew G. Knepley }
482f856554SMatthew G. Knepley 
49d71ae5a4SJacob Faibussowitsch static PetscErrorCode PetscContainerUserDestroy_PetscFEGeom(void *ctx)
50d71ae5a4SJacob Faibussowitsch {
519b6f715bSMatthew G. Knepley   PetscFEGeom *geom = (PetscFEGeom *)ctx;
529b6f715bSMatthew G. Knepley 
539b6f715bSMatthew G. Knepley   PetscFunctionBegin;
549566063dSJacob Faibussowitsch   PetscCall(PetscFEGeomDestroy(&geom));
553ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
569b6f715bSMatthew G. Knepley }
579b6f715bSMatthew G. Knepley 
58d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexGetFEGeom(DMField coordField, IS pointIS, PetscQuadrature quad, PetscBool faceData, PetscFEGeom **geom)
59d71ae5a4SJacob Faibussowitsch {
609b6f715bSMatthew G. Knepley   char           composeStr[33] = {0};
619b6f715bSMatthew G. Knepley   PetscObjectId  id;
629b6f715bSMatthew G. Knepley   PetscContainer container;
639b6f715bSMatthew G. Knepley 
649b6f715bSMatthew G. Knepley   PetscFunctionBegin;
659566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetId((PetscObject)quad, &id));
6663a3b9bcSJacob Faibussowitsch   PetscCall(PetscSNPrintf(composeStr, 32, "DMPlexGetFEGeom_%" PetscInt64_FMT "\n", id));
679566063dSJacob Faibussowitsch   PetscCall(PetscObjectQuery((PetscObject)pointIS, composeStr, (PetscObject *)&container));
689b6f715bSMatthew G. Knepley   if (container) {
699566063dSJacob Faibussowitsch     PetscCall(PetscContainerGetPointer(container, (void **)geom));
709b6f715bSMatthew G. Knepley   } else {
719566063dSJacob Faibussowitsch     PetscCall(DMFieldCreateFEGeom(coordField, pointIS, quad, faceData, geom));
729566063dSJacob Faibussowitsch     PetscCall(PetscContainerCreate(PETSC_COMM_SELF, &container));
739566063dSJacob Faibussowitsch     PetscCall(PetscContainerSetPointer(container, (void *)*geom));
749566063dSJacob Faibussowitsch     PetscCall(PetscContainerSetUserDestroy(container, PetscContainerUserDestroy_PetscFEGeom));
759566063dSJacob Faibussowitsch     PetscCall(PetscObjectCompose((PetscObject)pointIS, composeStr, (PetscObject)container));
769566063dSJacob Faibussowitsch     PetscCall(PetscContainerDestroy(&container));
779b6f715bSMatthew G. Knepley   }
783ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
799b6f715bSMatthew G. Knepley }
809b6f715bSMatthew G. Knepley 
81d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexRestoreFEGeom(DMField coordField, IS pointIS, PetscQuadrature quad, PetscBool faceData, PetscFEGeom **geom)
82d71ae5a4SJacob Faibussowitsch {
839b6f715bSMatthew G. Knepley   PetscFunctionBegin;
849b6f715bSMatthew G. Knepley   *geom = NULL;
853ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
869b6f715bSMatthew G. Knepley }
879b6f715bSMatthew G. Knepley 
8846fa42a0SMatthew G. Knepley /*@
8946fa42a0SMatthew G. Knepley   DMPlexGetScale - Get the scale for the specified fundamental unit
9046fa42a0SMatthew G. Knepley 
9120f4b53cSBarry Smith   Not Collective
9246fa42a0SMatthew G. Knepley 
934165533cSJose E. Roman   Input Parameters:
94a1cb98faSBarry Smith + dm   - the `DM`
9546fa42a0SMatthew G. Knepley - unit - The SI unit
9646fa42a0SMatthew G. Knepley 
974165533cSJose E. Roman   Output Parameter:
9846fa42a0SMatthew G. Knepley . scale - The value used to scale all quantities with this unit
9946fa42a0SMatthew G. Knepley 
10046fa42a0SMatthew G. Knepley   Level: advanced
10146fa42a0SMatthew G. Knepley 
1021cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexSetScale()`, `PetscUnit`
10346fa42a0SMatthew G. Knepley @*/
104d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexGetScale(DM dm, PetscUnit unit, PetscReal *scale)
105d71ae5a4SJacob Faibussowitsch {
106cb1e1211SMatthew G Knepley   DM_Plex *mesh = (DM_Plex *)dm->data;
107cb1e1211SMatthew G Knepley 
108cb1e1211SMatthew G Knepley   PetscFunctionBegin;
109cb1e1211SMatthew G Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
1104f572ea9SToby Isaac   PetscAssertPointer(scale, 3);
111cb1e1211SMatthew G Knepley   *scale = mesh->scale[unit];
1123ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
113cb1e1211SMatthew G Knepley }
114cb1e1211SMatthew G Knepley 
11546fa42a0SMatthew G. Knepley /*@
11646fa42a0SMatthew G. Knepley   DMPlexSetScale - Set the scale for the specified fundamental unit
11746fa42a0SMatthew G. Knepley 
11820f4b53cSBarry Smith   Not Collective
11946fa42a0SMatthew G. Knepley 
1204165533cSJose E. Roman   Input Parameters:
121a1cb98faSBarry Smith + dm    - the `DM`
12246fa42a0SMatthew G. Knepley . unit  - The SI unit
12346fa42a0SMatthew G. Knepley - scale - The value used to scale all quantities with this unit
12446fa42a0SMatthew G. Knepley 
12546fa42a0SMatthew G. Knepley   Level: advanced
12646fa42a0SMatthew G. Knepley 
1271cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexGetScale()`, `PetscUnit`
12846fa42a0SMatthew G. Knepley @*/
129d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexSetScale(DM dm, PetscUnit unit, PetscReal scale)
130d71ae5a4SJacob Faibussowitsch {
131cb1e1211SMatthew G Knepley   DM_Plex *mesh = (DM_Plex *)dm->data;
132cb1e1211SMatthew G Knepley 
133cb1e1211SMatthew G Knepley   PetscFunctionBegin;
134cb1e1211SMatthew G Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
135cb1e1211SMatthew G Knepley   mesh->scale[unit] = scale;
1363ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
137cb1e1211SMatthew G Knepley }
138cb1e1211SMatthew G Knepley 
139d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexProjectRigidBody_Private(PetscInt dim, PetscReal t, const PetscReal X[], PetscInt Nc, PetscScalar *mode, void *ctx)
140d71ae5a4SJacob Faibussowitsch {
1419371c9d4SSatish Balay   const PetscInt eps[3][3][3] = {
1429371c9d4SSatish Balay     {{0, 0, 0},  {0, 0, 1},  {0, -1, 0}},
1439371c9d4SSatish Balay     {{0, 0, -1}, {0, 0, 0},  {1, 0, 0} },
1449371c9d4SSatish Balay     {{0, 1, 0},  {-1, 0, 0}, {0, 0, 0} }
1459371c9d4SSatish Balay   };
146026175e5SToby Isaac   PetscInt *ctxInt = (PetscInt *)ctx;
147ad917190SMatthew G. Knepley   PetscInt  dim2   = ctxInt[0];
148026175e5SToby Isaac   PetscInt  d      = ctxInt[1];
149026175e5SToby Isaac   PetscInt  i, j, k = dim > 2 ? d - dim : d;
150026175e5SToby Isaac 
151ad917190SMatthew G. Knepley   PetscFunctionBegin;
15263a3b9bcSJacob Faibussowitsch   PetscCheck(dim == dim2, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Input dimension %" PetscInt_FMT " does not match context dimension %" PetscInt_FMT, dim, dim2);
153026175e5SToby Isaac   for (i = 0; i < dim; i++) mode[i] = 0.;
154026175e5SToby Isaac   if (d < dim) {
15512adca46SMatthew G. Knepley     mode[d] = 1.; /* Translation along axis d */
156ad917190SMatthew G. Knepley   } else {
157026175e5SToby Isaac     for (i = 0; i < dim; i++) {
1589371c9d4SSatish Balay       for (j = 0; j < dim; j++) { mode[j] += eps[i][j][k] * X[i]; /* Rotation about axis d */ }
159026175e5SToby Isaac     }
160026175e5SToby Isaac   }
1613ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
162026175e5SToby Isaac }
163026175e5SToby Isaac 
164cc4e42d9SMartin Diehl /*@
16512adca46SMatthew G. Knepley   DMPlexCreateRigidBody - For the default global section, create rigid body modes by function space interpolation
166cb1e1211SMatthew G Knepley 
16720f4b53cSBarry Smith   Collective
168cb1e1211SMatthew G Knepley 
1694165533cSJose E. Roman   Input Parameters:
170a1cb98faSBarry Smith + dm    - the `DM`
17156cf3b9cSMatthew G. Knepley - field - The field number for the rigid body space, or 0 for the default
172cb1e1211SMatthew G Knepley 
1734165533cSJose E. Roman   Output Parameter:
174cb1e1211SMatthew G Knepley . sp - the null space
175cb1e1211SMatthew G Knepley 
176cb1e1211SMatthew G Knepley   Level: advanced
177cb1e1211SMatthew G Knepley 
178a1cb98faSBarry Smith   Note:
179a1cb98faSBarry Smith   This is necessary to provide a suitable coarse space for algebraic multigrid
180a1cb98faSBarry Smith 
1811cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `MatNullSpaceCreate()`, `PCGAMG`
182cb1e1211SMatthew G Knepley @*/
183d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexCreateRigidBody(DM dm, PetscInt field, MatNullSpace *sp)
184d71ae5a4SJacob Faibussowitsch {
18556cf3b9cSMatthew G. Knepley   PetscErrorCode (**func)(PetscInt, PetscReal, const PetscReal *, PetscInt, PetscScalar *, void *);
186cb1e1211SMatthew G Knepley   MPI_Comm     comm;
187026175e5SToby Isaac   Vec          mode[6];
188026175e5SToby Isaac   PetscSection section, globalSection;
18956cf3b9cSMatthew G. Knepley   PetscInt     dim, dimEmbed, Nf, n, m, mmin, d, i, j;
190db14aad5SMatthew G. Knepley   void       **ctxs;
191cb1e1211SMatthew G Knepley 
192cb1e1211SMatthew G Knepley   PetscFunctionBegin;
1939566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)dm, &comm));
1949566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dm, &dim));
1959566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateDim(dm, &dimEmbed));
1969566063dSJacob Faibussowitsch   PetscCall(DMGetNumFields(dm, &Nf));
19763a3b9bcSJacob Faibussowitsch   PetscCheck(!Nf || !(field < 0 || field >= Nf), comm, PETSC_ERR_ARG_OUTOFRANGE, "Field %" PetscInt_FMT " is not in [0, %" PetscInt_FMT ")", field, Nf);
19856cf3b9cSMatthew G. Knepley   if (dim == 1 && Nf < 2) {
1999566063dSJacob Faibussowitsch     PetscCall(MatNullSpaceCreate(comm, PETSC_TRUE, 0, NULL, sp));
2003ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
201cb1e1211SMatthew G Knepley   }
2029566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dm, &section));
2039566063dSJacob Faibussowitsch   PetscCall(DMGetGlobalSection(dm, &globalSection));
2049566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetConstrainedStorageSize(globalSection, &n));
205db14aad5SMatthew G. Knepley   PetscCall(PetscCalloc2(Nf, &func, Nf, &ctxs));
206b247467aSMatthew G. Knepley   m = (dim * (dim + 1)) / 2;
2079566063dSJacob Faibussowitsch   PetscCall(VecCreate(comm, &mode[0]));
2089566063dSJacob Faibussowitsch   PetscCall(VecSetType(mode[0], dm->vectype));
2099566063dSJacob Faibussowitsch   PetscCall(VecSetSizes(mode[0], n, PETSC_DETERMINE));
2109566063dSJacob Faibussowitsch   PetscCall(VecSetUp(mode[0]));
2119566063dSJacob Faibussowitsch   PetscCall(VecGetSize(mode[0], &n));
212b247467aSMatthew G. Knepley   mmin        = PetscMin(m, n);
21356cf3b9cSMatthew G. Knepley   func[field] = DMPlexProjectRigidBody_Private;
2149566063dSJacob Faibussowitsch   for (i = 1; i < m; ++i) PetscCall(VecDuplicate(mode[0], &mode[i]));
215026175e5SToby Isaac   for (d = 0; d < m; d++) {
216330485fdSToby Isaac     PetscInt ctx[2];
217cb1e1211SMatthew G Knepley 
218db14aad5SMatthew G. Knepley     ctxs[field] = (void *)(&ctx[0]);
2199d8fbdeaSMatthew G. Knepley     ctx[0]      = dimEmbed;
220330485fdSToby Isaac     ctx[1]      = d;
221db14aad5SMatthew G. Knepley     PetscCall(DMProjectFunction(dm, 0.0, func, ctxs, INSERT_VALUES, mode[d]));
222cb1e1211SMatthew G Knepley   }
2233b2202bfSJacob Faibussowitsch   /* Orthonormalize system */
224b50a2c0aSJacob Faibussowitsch   for (i = 0; i < mmin; ++i) {
225b77f2eeeSJacob Faibussowitsch     PetscScalar dots[6];
226b50a2c0aSJacob Faibussowitsch 
2279566063dSJacob Faibussowitsch     PetscCall(VecNormalize(mode[i], NULL));
2289566063dSJacob Faibussowitsch     PetscCall(VecMDot(mode[i], mmin - i - 1, mode + i + 1, dots + i + 1));
229b50a2c0aSJacob Faibussowitsch     for (j = i + 1; j < mmin; ++j) {
230b77f2eeeSJacob Faibussowitsch       dots[j] *= -1.0;
2319566063dSJacob Faibussowitsch       PetscCall(VecAXPY(mode[j], dots[j], mode[i]));
232b50a2c0aSJacob Faibussowitsch     }
233cb1e1211SMatthew G Knepley   }
2349566063dSJacob Faibussowitsch   PetscCall(MatNullSpaceCreate(comm, PETSC_FALSE, mmin, mode, sp));
2359566063dSJacob Faibussowitsch   for (i = 0; i < m; ++i) PetscCall(VecDestroy(&mode[i]));
236db14aad5SMatthew G. Knepley   PetscCall(PetscFree2(func, ctxs));
2373ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
238cb1e1211SMatthew G Knepley }
239cb1e1211SMatthew G Knepley 
240cc4e42d9SMartin Diehl /*@
24112adca46SMatthew G. Knepley   DMPlexCreateRigidBodies - For the default global section, create rigid body modes by function space interpolation
24212adca46SMatthew G. Knepley 
24320f4b53cSBarry Smith   Collective
24412adca46SMatthew G. Knepley 
2454165533cSJose E. Roman   Input Parameters:
246a1cb98faSBarry Smith + dm    - the `DM`
24712adca46SMatthew G. Knepley . nb    - The number of bodies
248a1cb98faSBarry Smith . label - The `DMLabel` marking each domain
24912adca46SMatthew G. Knepley . nids  - The number of ids per body
25012adca46SMatthew G. Knepley - ids   - An array of the label ids in sequence for each domain
25112adca46SMatthew G. Knepley 
2524165533cSJose E. Roman   Output Parameter:
25312adca46SMatthew G. Knepley . sp - the null space
25412adca46SMatthew G. Knepley 
25512adca46SMatthew G. Knepley   Level: advanced
25612adca46SMatthew G. Knepley 
257a1cb98faSBarry Smith   Note:
258a1cb98faSBarry Smith   This is necessary to provide a suitable coarse space for algebraic multigrid
259a1cb98faSBarry Smith 
2601cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `MatNullSpaceCreate()`
26112adca46SMatthew G. Knepley @*/
262d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexCreateRigidBodies(DM dm, PetscInt nb, DMLabel label, const PetscInt nids[], const PetscInt ids[], MatNullSpace *sp)
263d71ae5a4SJacob Faibussowitsch {
26412adca46SMatthew G. Knepley   MPI_Comm     comm;
26512adca46SMatthew G. Knepley   PetscSection section, globalSection;
26612adca46SMatthew G. Knepley   Vec         *mode;
26712adca46SMatthew G. Knepley   PetscScalar *dots;
26812adca46SMatthew G. Knepley   PetscInt     dim, dimEmbed, n, m, b, d, i, j, off;
26912adca46SMatthew G. Knepley 
27012adca46SMatthew G. Knepley   PetscFunctionBegin;
2719566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)dm, &comm));
2729566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dm, &dim));
2739566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateDim(dm, &dimEmbed));
2749566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dm, &section));
2759566063dSJacob Faibussowitsch   PetscCall(DMGetGlobalSection(dm, &globalSection));
2769566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetConstrainedStorageSize(globalSection, &n));
27712adca46SMatthew G. Knepley   m = nb * (dim * (dim + 1)) / 2;
2789566063dSJacob Faibussowitsch   PetscCall(PetscMalloc2(m, &mode, m, &dots));
2799566063dSJacob Faibussowitsch   PetscCall(VecCreate(comm, &mode[0]));
2809566063dSJacob Faibussowitsch   PetscCall(VecSetSizes(mode[0], n, PETSC_DETERMINE));
2819566063dSJacob Faibussowitsch   PetscCall(VecSetUp(mode[0]));
2829566063dSJacob Faibussowitsch   for (i = 1; i < m; ++i) PetscCall(VecDuplicate(mode[0], &mode[i]));
28312adca46SMatthew G. Knepley   for (b = 0, off = 0; b < nb; ++b) {
28412adca46SMatthew G. Knepley     for (d = 0; d < m / nb; ++d) {
28512adca46SMatthew G. Knepley       PetscInt ctx[2];
28612adca46SMatthew G. Knepley       PetscErrorCode (*func)(PetscInt, PetscReal, const PetscReal *, PetscInt, PetscScalar *, void *) = DMPlexProjectRigidBody_Private;
28712adca46SMatthew G. Knepley       void *voidctx                                                                                   = (void *)(&ctx[0]);
28812adca46SMatthew G. Knepley 
28912adca46SMatthew G. Knepley       ctx[0] = dimEmbed;
29012adca46SMatthew G. Knepley       ctx[1] = d;
2919566063dSJacob Faibussowitsch       PetscCall(DMProjectFunctionLabel(dm, 0.0, label, nids[b], &ids[off], 0, NULL, &func, &voidctx, INSERT_VALUES, mode[d]));
29212adca46SMatthew G. Knepley       off += nids[b];
29312adca46SMatthew G. Knepley     }
29412adca46SMatthew G. Knepley   }
2953b2202bfSJacob Faibussowitsch   /* Orthonormalize system */
296606c1a1cSJacob Faibussowitsch   for (i = 0; i < m; ++i) {
297b77f2eeeSJacob Faibussowitsch     PetscScalar dots[6];
2985a0e29b9SJacob Faibussowitsch 
2999566063dSJacob Faibussowitsch     PetscCall(VecNormalize(mode[i], NULL));
3009566063dSJacob Faibussowitsch     PetscCall(VecMDot(mode[i], m - i - 1, mode + i + 1, dots + i + 1));
3015a0e29b9SJacob Faibussowitsch     for (j = i + 1; j < m; ++j) {
302b77f2eeeSJacob Faibussowitsch       dots[j] *= -1.0;
3039566063dSJacob Faibussowitsch       PetscCall(VecAXPY(mode[j], dots[j], mode[i]));
3045a0e29b9SJacob Faibussowitsch     }
30512adca46SMatthew G. Knepley   }
3069566063dSJacob Faibussowitsch   PetscCall(MatNullSpaceCreate(comm, PETSC_FALSE, m, mode, sp));
3079566063dSJacob Faibussowitsch   for (i = 0; i < m; ++i) PetscCall(VecDestroy(&mode[i]));
3089566063dSJacob Faibussowitsch   PetscCall(PetscFree2(mode, dots));
3093ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
31012adca46SMatthew G. Knepley }
31112adca46SMatthew G. Knepley 
312b29cfa1cSToby Isaac /*@
313b29cfa1cSToby Isaac   DMPlexSetMaxProjectionHeight - In DMPlexProjectXXXLocal() functions, the projected values of a basis function's dofs
314b29cfa1cSToby Isaac   are computed by associating the basis function with one of the mesh points in its transitively-closed support, and
315*a4e35b19SJacob Faibussowitsch   evaluating the dual space basis of that point.
316b29cfa1cSToby Isaac 
317b29cfa1cSToby Isaac   Input Parameters:
318a1cb98faSBarry Smith + dm     - the `DMPLEX` object
319b29cfa1cSToby Isaac - height - the maximum projection height >= 0
320b29cfa1cSToby Isaac 
321b29cfa1cSToby Isaac   Level: advanced
322b29cfa1cSToby Isaac 
323*a4e35b19SJacob Faibussowitsch   Notes:
324*a4e35b19SJacob Faibussowitsch   A basis function is associated with the point in its transitively-closed support whose mesh
325*a4e35b19SJacob Faibussowitsch   height is highest (w.r.t. DAG height), but not greater than the maximum projection height,
326*a4e35b19SJacob Faibussowitsch   which is set with this function.  By default, the maximum projection height is zero, which
327*a4e35b19SJacob Faibussowitsch   means that only mesh cells are used to project basis functions.  A height of one, for
328*a4e35b19SJacob Faibussowitsch   example, evaluates a cell-interior basis functions using its cells dual space basis, but all
329*a4e35b19SJacob Faibussowitsch   other basis functions with the dual space basis of a face.
330*a4e35b19SJacob Faibussowitsch 
3311cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexGetMaxProjectionHeight()`, `DMProjectFunctionLocal()`, `DMProjectFunctionLabelLocal()`
332b29cfa1cSToby Isaac @*/
333d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexSetMaxProjectionHeight(DM dm, PetscInt height)
334d71ae5a4SJacob Faibussowitsch {
335b29cfa1cSToby Isaac   DM_Plex *plex = (DM_Plex *)dm->data;
336b29cfa1cSToby Isaac 
337b29cfa1cSToby Isaac   PetscFunctionBegin;
338b29cfa1cSToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
339b29cfa1cSToby Isaac   plex->maxProjectionHeight = height;
3403ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
341b29cfa1cSToby Isaac }
342b29cfa1cSToby Isaac 
343b29cfa1cSToby Isaac /*@
344b29cfa1cSToby Isaac   DMPlexGetMaxProjectionHeight - Get the maximum height (w.r.t. DAG) of mesh points used to evaluate dual bases in
345b29cfa1cSToby Isaac   DMPlexProjectXXXLocal() functions.
346b29cfa1cSToby Isaac 
3472fe279fdSBarry Smith   Input Parameter:
348a1cb98faSBarry Smith . dm - the `DMPLEX` object
349b29cfa1cSToby Isaac 
3502fe279fdSBarry Smith   Output Parameter:
351b29cfa1cSToby Isaac . height - the maximum projection height
352b29cfa1cSToby Isaac 
353b29cfa1cSToby Isaac   Level: intermediate
354b29cfa1cSToby Isaac 
3551cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexSetMaxProjectionHeight()`, `DMProjectFunctionLocal()`, `DMProjectFunctionLabelLocal()`
356b29cfa1cSToby Isaac @*/
357d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexGetMaxProjectionHeight(DM dm, PetscInt *height)
358d71ae5a4SJacob Faibussowitsch {
359b29cfa1cSToby Isaac   DM_Plex *plex = (DM_Plex *)dm->data;
360b29cfa1cSToby Isaac 
361b29cfa1cSToby Isaac   PetscFunctionBegin;
362b29cfa1cSToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
363b29cfa1cSToby Isaac   *height = plex->maxProjectionHeight;
3643ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
365b29cfa1cSToby Isaac }
366b29cfa1cSToby Isaac 
367ca3d3a14SMatthew G. Knepley typedef struct {
368ca3d3a14SMatthew G. Knepley   PetscReal    alpha; /* The first Euler angle, and in 2D the only one */
369ca3d3a14SMatthew G. Knepley   PetscReal    beta;  /* The second Euler angle */
370ca3d3a14SMatthew G. Knepley   PetscReal    gamma; /* The third Euler angle */
371ca3d3a14SMatthew G. Knepley   PetscInt     dim;   /* The dimension of R */
372ca3d3a14SMatthew G. Knepley   PetscScalar *R;     /* The rotation matrix, transforming a vector in the local basis to the global basis */
373ca3d3a14SMatthew G. Knepley   PetscScalar *RT;    /* The transposed rotation matrix, transforming a vector in the global basis to the local basis */
374ca3d3a14SMatthew G. Knepley } RotCtx;
375ca3d3a14SMatthew G. Knepley 
376ca3d3a14SMatthew G. Knepley /*
377ca3d3a14SMatthew G. Knepley   Note: Following https://en.wikipedia.org/wiki/Euler_angles, we will specify Euler angles by extrinsic rotations, meaning that
378ca3d3a14SMatthew G. Knepley   we rotate with respect to a fixed initial coordinate system, the local basis (x-y-z). The global basis (X-Y-Z) is reached as follows:
379ca3d3a14SMatthew G. Knepley   $ The XYZ system rotates about the z axis by alpha. The X axis is now at angle alpha with respect to the x axis.
380ca3d3a14SMatthew G. Knepley   $ The XYZ system rotates again about the x axis by beta. The Z axis is now at angle beta with respect to the z axis.
381ca3d3a14SMatthew G. Knepley   $ The XYZ system rotates a third time about the z axis by gamma.
382ca3d3a14SMatthew G. Knepley */
383d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexBasisTransformSetUp_Rotation_Internal(DM dm, void *ctx)
384d71ae5a4SJacob Faibussowitsch {
385ca3d3a14SMatthew G. Knepley   RotCtx   *rc  = (RotCtx *)ctx;
386ca3d3a14SMatthew G. Knepley   PetscInt  dim = rc->dim;
387ca3d3a14SMatthew G. Knepley   PetscReal c1, s1, c2, s2, c3, s3;
388ca3d3a14SMatthew G. Knepley 
389ca3d3a14SMatthew G. Knepley   PetscFunctionBegin;
3909566063dSJacob Faibussowitsch   PetscCall(PetscMalloc2(PetscSqr(dim), &rc->R, PetscSqr(dim), &rc->RT));
391ca3d3a14SMatthew G. Knepley   switch (dim) {
392ca3d3a14SMatthew G. Knepley   case 2:
3939371c9d4SSatish Balay     c1       = PetscCosReal(rc->alpha);
3949371c9d4SSatish Balay     s1       = PetscSinReal(rc->alpha);
3959371c9d4SSatish Balay     rc->R[0] = c1;
3969371c9d4SSatish Balay     rc->R[1] = s1;
3979371c9d4SSatish Balay     rc->R[2] = -s1;
3989371c9d4SSatish Balay     rc->R[3] = c1;
3999566063dSJacob Faibussowitsch     PetscCall(PetscArraycpy(rc->RT, rc->R, PetscSqr(dim)));
400b458e8f1SJose E. Roman     DMPlex_Transpose2D_Internal(rc->RT);
401ca3d3a14SMatthew G. Knepley     break;
402ca3d3a14SMatthew G. Knepley   case 3:
4039371c9d4SSatish Balay     c1       = PetscCosReal(rc->alpha);
4049371c9d4SSatish Balay     s1       = PetscSinReal(rc->alpha);
4059371c9d4SSatish Balay     c2       = PetscCosReal(rc->beta);
4069371c9d4SSatish Balay     s2       = PetscSinReal(rc->beta);
4079371c9d4SSatish Balay     c3       = PetscCosReal(rc->gamma);
4089371c9d4SSatish Balay     s3       = PetscSinReal(rc->gamma);
4099371c9d4SSatish Balay     rc->R[0] = c1 * c3 - c2 * s1 * s3;
4109371c9d4SSatish Balay     rc->R[1] = c3 * s1 + c1 * c2 * s3;
4119371c9d4SSatish Balay     rc->R[2] = s2 * s3;
4129371c9d4SSatish Balay     rc->R[3] = -c1 * s3 - c2 * c3 * s1;
4139371c9d4SSatish Balay     rc->R[4] = c1 * c2 * c3 - s1 * s3;
4149371c9d4SSatish Balay     rc->R[5] = c3 * s2;
4159371c9d4SSatish Balay     rc->R[6] = s1 * s2;
4169371c9d4SSatish Balay     rc->R[7] = -c1 * s2;
4179371c9d4SSatish Balay     rc->R[8] = c2;
4189566063dSJacob Faibussowitsch     PetscCall(PetscArraycpy(rc->RT, rc->R, PetscSqr(dim)));
419b458e8f1SJose E. Roman     DMPlex_Transpose3D_Internal(rc->RT);
420ca3d3a14SMatthew G. Knepley     break;
421d71ae5a4SJacob Faibussowitsch   default:
422d71ae5a4SJacob Faibussowitsch     SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Dimension %" PetscInt_FMT " not supported", dim);
423ca3d3a14SMatthew G. Knepley   }
4243ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
425ca3d3a14SMatthew G. Knepley }
426ca3d3a14SMatthew G. Knepley 
427d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexBasisTransformDestroy_Rotation_Internal(DM dm, void *ctx)
428d71ae5a4SJacob Faibussowitsch {
429ca3d3a14SMatthew G. Knepley   RotCtx *rc = (RotCtx *)ctx;
430ca3d3a14SMatthew G. Knepley 
431ca3d3a14SMatthew G. Knepley   PetscFunctionBegin;
4329566063dSJacob Faibussowitsch   PetscCall(PetscFree2(rc->R, rc->RT));
4339566063dSJacob Faibussowitsch   PetscCall(PetscFree(rc));
4343ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
435ca3d3a14SMatthew G. Knepley }
436ca3d3a14SMatthew G. Knepley 
437d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexBasisTransformGetMatrix_Rotation_Internal(DM dm, const PetscReal x[], PetscBool l2g, const PetscScalar **A, void *ctx)
438d71ae5a4SJacob Faibussowitsch {
439ca3d3a14SMatthew G. Knepley   RotCtx *rc = (RotCtx *)ctx;
440ca3d3a14SMatthew G. Knepley 
441ca3d3a14SMatthew G. Knepley   PetscFunctionBeginHot;
4424f572ea9SToby Isaac   PetscAssertPointer(ctx, 5);
4439371c9d4SSatish Balay   if (l2g) {
4449371c9d4SSatish Balay     *A = rc->R;
4459371c9d4SSatish Balay   } else {
4469371c9d4SSatish Balay     *A = rc->RT;
4479371c9d4SSatish Balay   }
4483ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
449ca3d3a14SMatthew G. Knepley }
450ca3d3a14SMatthew G. Knepley 
451d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexBasisTransformApplyReal_Internal(DM dm, const PetscReal x[], PetscBool l2g, PetscInt dim, const PetscReal *y, PetscReal *z, void *ctx)
452d71ae5a4SJacob Faibussowitsch {
453ec277c0fSMatthew G. Knepley   PetscFunctionBegin;
454ab6a9622SMatthew G. Knepley #if defined(PETSC_USE_COMPLEX)
455ab6a9622SMatthew G. Knepley   switch (dim) {
4569371c9d4SSatish Balay   case 2: {
45727104ee2SJacob Faibussowitsch     PetscScalar yt[2] = {y[0], y[1]}, zt[2] = {0.0, 0.0};
458ab6a9622SMatthew G. Knepley 
4599566063dSJacob Faibussowitsch     PetscCall(DMPlexBasisTransformApply_Internal(dm, x, l2g, dim, yt, zt, ctx));
4609371c9d4SSatish Balay     z[0] = PetscRealPart(zt[0]);
4619371c9d4SSatish Balay     z[1] = PetscRealPart(zt[1]);
4629371c9d4SSatish Balay   } break;
4639371c9d4SSatish Balay   case 3: {
46427104ee2SJacob Faibussowitsch     PetscScalar yt[3] = {y[0], y[1], y[2]}, zt[3] = {0.0, 0.0, 0.0};
465ab6a9622SMatthew G. Knepley 
4669566063dSJacob Faibussowitsch     PetscCall(DMPlexBasisTransformApply_Internal(dm, x, l2g, dim, yt, zt, ctx));
4679371c9d4SSatish Balay     z[0] = PetscRealPart(zt[0]);
4689371c9d4SSatish Balay     z[1] = PetscRealPart(zt[1]);
4699371c9d4SSatish Balay     z[2] = PetscRealPart(zt[2]);
4709371c9d4SSatish Balay   } break;
471ab6a9622SMatthew G. Knepley   }
472ab6a9622SMatthew G. Knepley #else
4739566063dSJacob Faibussowitsch   PetscCall(DMPlexBasisTransformApply_Internal(dm, x, l2g, dim, y, z, ctx));
474ab6a9622SMatthew G. Knepley #endif
4753ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
476ab6a9622SMatthew G. Knepley }
477ab6a9622SMatthew G. Knepley 
478d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexBasisTransformApply_Internal(DM dm, const PetscReal x[], PetscBool l2g, PetscInt dim, const PetscScalar *y, PetscScalar *z, void *ctx)
479d71ae5a4SJacob Faibussowitsch {
480ca3d3a14SMatthew G. Knepley   const PetscScalar *A;
481ca3d3a14SMatthew G. Knepley 
482ca3d3a14SMatthew G. Knepley   PetscFunctionBeginHot;
4839566063dSJacob Faibussowitsch   PetscCall((*dm->transformGetMatrix)(dm, x, l2g, &A, ctx));
484ca3d3a14SMatthew G. Knepley   switch (dim) {
485d71ae5a4SJacob Faibussowitsch   case 2:
486d71ae5a4SJacob Faibussowitsch     DMPlex_Mult2D_Internal(A, 1, y, z);
487d71ae5a4SJacob Faibussowitsch     break;
488d71ae5a4SJacob Faibussowitsch   case 3:
489d71ae5a4SJacob Faibussowitsch     DMPlex_Mult3D_Internal(A, 1, y, z);
490d71ae5a4SJacob Faibussowitsch     break;
491ca3d3a14SMatthew G. Knepley   }
4923ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
493ca3d3a14SMatthew G. Knepley }
494ca3d3a14SMatthew G. Knepley 
495d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexBasisTransformField_Internal(DM dm, DM tdm, Vec tv, PetscInt p, PetscInt f, PetscBool l2g, PetscScalar *a)
496d71ae5a4SJacob Faibussowitsch {
497ca3d3a14SMatthew G. Knepley   PetscSection       ts;
498ca3d3a14SMatthew G. Knepley   const PetscScalar *ta, *tva;
499ca3d3a14SMatthew G. Knepley   PetscInt           dof;
500ca3d3a14SMatthew G. Knepley 
501ca3d3a14SMatthew G. Knepley   PetscFunctionBeginHot;
5029566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(tdm, &ts));
5039566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetFieldDof(ts, p, f, &dof));
5049566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(tv, &ta));
5059566063dSJacob Faibussowitsch   PetscCall(DMPlexPointLocalFieldRead(tdm, p, f, ta, &tva));
506ca3d3a14SMatthew G. Knepley   if (l2g) {
507ca3d3a14SMatthew G. Knepley     switch (dof) {
508d71ae5a4SJacob Faibussowitsch     case 4:
509d71ae5a4SJacob Faibussowitsch       DMPlex_Mult2D_Internal(tva, 1, a, a);
510d71ae5a4SJacob Faibussowitsch       break;
511d71ae5a4SJacob Faibussowitsch     case 9:
512d71ae5a4SJacob Faibussowitsch       DMPlex_Mult3D_Internal(tva, 1, a, a);
513d71ae5a4SJacob Faibussowitsch       break;
514ca3d3a14SMatthew G. Knepley     }
515ca3d3a14SMatthew G. Knepley   } else {
516ca3d3a14SMatthew G. Knepley     switch (dof) {
517d71ae5a4SJacob Faibussowitsch     case 4:
518d71ae5a4SJacob Faibussowitsch       DMPlex_MultTranspose2D_Internal(tva, 1, a, a);
519d71ae5a4SJacob Faibussowitsch       break;
520d71ae5a4SJacob Faibussowitsch     case 9:
521d71ae5a4SJacob Faibussowitsch       DMPlex_MultTranspose3D_Internal(tva, 1, a, a);
522d71ae5a4SJacob Faibussowitsch       break;
523ca3d3a14SMatthew G. Knepley     }
524ca3d3a14SMatthew G. Knepley   }
5259566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(tv, &ta));
5263ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
527ca3d3a14SMatthew G. Knepley }
528ca3d3a14SMatthew G. Knepley 
529d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexBasisTransformFieldTensor_Internal(DM dm, DM tdm, Vec tv, PetscInt pf, PetscInt f, PetscInt pg, PetscInt g, PetscBool l2g, PetscInt lda, PetscScalar *a)
530d71ae5a4SJacob Faibussowitsch {
531ca3d3a14SMatthew G. Knepley   PetscSection       s, ts;
532ca3d3a14SMatthew G. Knepley   const PetscScalar *ta, *tvaf, *tvag;
533ca3d3a14SMatthew G. Knepley   PetscInt           fdof, gdof, fpdof, gpdof;
534ca3d3a14SMatthew G. Knepley 
535ca3d3a14SMatthew G. Knepley   PetscFunctionBeginHot;
5369566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dm, &s));
5379566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(tdm, &ts));
5389566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetFieldDof(s, pf, f, &fpdof));
5399566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetFieldDof(s, pg, g, &gpdof));
5409566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetFieldDof(ts, pf, f, &fdof));
5419566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetFieldDof(ts, pg, g, &gdof));
5429566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(tv, &ta));
5439566063dSJacob Faibussowitsch   PetscCall(DMPlexPointLocalFieldRead(tdm, pf, f, ta, &tvaf));
5449566063dSJacob Faibussowitsch   PetscCall(DMPlexPointLocalFieldRead(tdm, pg, g, ta, &tvag));
545ca3d3a14SMatthew G. Knepley   if (l2g) {
546ca3d3a14SMatthew G. Knepley     switch (fdof) {
547d71ae5a4SJacob Faibussowitsch     case 4:
548d71ae5a4SJacob Faibussowitsch       DMPlex_MatMult2D_Internal(tvaf, gpdof, lda, a, a);
549d71ae5a4SJacob Faibussowitsch       break;
550d71ae5a4SJacob Faibussowitsch     case 9:
551d71ae5a4SJacob Faibussowitsch       DMPlex_MatMult3D_Internal(tvaf, gpdof, lda, a, a);
552d71ae5a4SJacob Faibussowitsch       break;
553ca3d3a14SMatthew G. Knepley     }
554ca3d3a14SMatthew G. Knepley     switch (gdof) {
555d71ae5a4SJacob Faibussowitsch     case 4:
556d71ae5a4SJacob Faibussowitsch       DMPlex_MatMultTransposeLeft2D_Internal(tvag, fpdof, lda, a, a);
557d71ae5a4SJacob Faibussowitsch       break;
558d71ae5a4SJacob Faibussowitsch     case 9:
559d71ae5a4SJacob Faibussowitsch       DMPlex_MatMultTransposeLeft3D_Internal(tvag, fpdof, lda, a, a);
560d71ae5a4SJacob Faibussowitsch       break;
561ca3d3a14SMatthew G. Knepley     }
562ca3d3a14SMatthew G. Knepley   } else {
563ca3d3a14SMatthew G. Knepley     switch (fdof) {
564d71ae5a4SJacob Faibussowitsch     case 4:
565d71ae5a4SJacob Faibussowitsch       DMPlex_MatMultTranspose2D_Internal(tvaf, gpdof, lda, a, a);
566d71ae5a4SJacob Faibussowitsch       break;
567d71ae5a4SJacob Faibussowitsch     case 9:
568d71ae5a4SJacob Faibussowitsch       DMPlex_MatMultTranspose3D_Internal(tvaf, gpdof, lda, a, a);
569d71ae5a4SJacob Faibussowitsch       break;
570ca3d3a14SMatthew G. Knepley     }
571ca3d3a14SMatthew G. Knepley     switch (gdof) {
572d71ae5a4SJacob Faibussowitsch     case 4:
573d71ae5a4SJacob Faibussowitsch       DMPlex_MatMultLeft2D_Internal(tvag, fpdof, lda, a, a);
574d71ae5a4SJacob Faibussowitsch       break;
575d71ae5a4SJacob Faibussowitsch     case 9:
576d71ae5a4SJacob Faibussowitsch       DMPlex_MatMultLeft3D_Internal(tvag, fpdof, lda, a, a);
577d71ae5a4SJacob Faibussowitsch       break;
578ca3d3a14SMatthew G. Knepley     }
579ca3d3a14SMatthew G. Knepley   }
5809566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(tv, &ta));
5813ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
582ca3d3a14SMatthew G. Knepley }
583ca3d3a14SMatthew G. Knepley 
584d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexBasisTransformPoint_Internal(DM dm, DM tdm, Vec tv, PetscInt p, PetscBool fieldActive[], PetscBool l2g, PetscScalar *a)
585d71ae5a4SJacob Faibussowitsch {
586ca3d3a14SMatthew G. Knepley   PetscSection    s;
587ca3d3a14SMatthew G. Knepley   PetscSection    clSection;
588ca3d3a14SMatthew G. Knepley   IS              clPoints;
589ca3d3a14SMatthew G. Knepley   const PetscInt *clp;
590ca3d3a14SMatthew G. Knepley   PetscInt       *points = NULL;
591ca3d3a14SMatthew G. Knepley   PetscInt        Nf, f, Np, cp, dof, d = 0;
592ca3d3a14SMatthew G. Knepley 
593ca3d3a14SMatthew G. Knepley   PetscFunctionBegin;
5949566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dm, &s));
5959566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetNumFields(s, &Nf));
59607218a29SMatthew G. Knepley   PetscCall(DMPlexGetCompressedClosure(dm, s, p, 0, &Np, &points, &clSection, &clPoints, &clp));
597ca3d3a14SMatthew G. Knepley   for (f = 0; f < Nf; ++f) {
598ca3d3a14SMatthew G. Knepley     for (cp = 0; cp < Np * 2; cp += 2) {
5999566063dSJacob Faibussowitsch       PetscCall(PetscSectionGetFieldDof(s, points[cp], f, &dof));
600ca3d3a14SMatthew G. Knepley       if (!dof) continue;
6019566063dSJacob Faibussowitsch       if (fieldActive[f]) PetscCall(DMPlexBasisTransformField_Internal(dm, tdm, tv, points[cp], f, l2g, &a[d]));
602ca3d3a14SMatthew G. Knepley       d += dof;
603ca3d3a14SMatthew G. Knepley     }
604ca3d3a14SMatthew G. Knepley   }
6059566063dSJacob Faibussowitsch   PetscCall(DMPlexRestoreCompressedClosure(dm, s, p, &Np, &points, &clSection, &clPoints, &clp));
6063ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
607ca3d3a14SMatthew G. Knepley }
608ca3d3a14SMatthew G. Knepley 
609d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexBasisTransformPointTensor_Internal(DM dm, DM tdm, Vec tv, PetscInt p, PetscBool l2g, PetscInt lda, PetscScalar *a)
610d71ae5a4SJacob Faibussowitsch {
611ca3d3a14SMatthew G. Knepley   PetscSection    s;
612ca3d3a14SMatthew G. Knepley   PetscSection    clSection;
613ca3d3a14SMatthew G. Knepley   IS              clPoints;
614ca3d3a14SMatthew G. Knepley   const PetscInt *clp;
615ca3d3a14SMatthew G. Knepley   PetscInt       *points = NULL;
6168bdb3c71SMatthew G. Knepley   PetscInt        Nf, f, g, Np, cpf, cpg, fdof, gdof, r, c = 0;
617ca3d3a14SMatthew G. Knepley 
618ca3d3a14SMatthew G. Knepley   PetscFunctionBegin;
6199566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dm, &s));
6209566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetNumFields(s, &Nf));
62107218a29SMatthew G. Knepley   PetscCall(DMPlexGetCompressedClosure(dm, s, p, 0, &Np, &points, &clSection, &clPoints, &clp));
622ca3d3a14SMatthew G. Knepley   for (f = 0, r = 0; f < Nf; ++f) {
623ca3d3a14SMatthew G. Knepley     for (cpf = 0; cpf < Np * 2; cpf += 2) {
6249566063dSJacob Faibussowitsch       PetscCall(PetscSectionGetFieldDof(s, points[cpf], f, &fdof));
625ca3d3a14SMatthew G. Knepley       for (g = 0, c = 0; g < Nf; ++g) {
626ca3d3a14SMatthew G. Knepley         for (cpg = 0; cpg < Np * 2; cpg += 2) {
6279566063dSJacob Faibussowitsch           PetscCall(PetscSectionGetFieldDof(s, points[cpg], g, &gdof));
6289566063dSJacob Faibussowitsch           PetscCall(DMPlexBasisTransformFieldTensor_Internal(dm, tdm, tv, points[cpf], f, points[cpg], g, l2g, lda, &a[r * lda + c]));
629ca3d3a14SMatthew G. Knepley           c += gdof;
630ca3d3a14SMatthew G. Knepley         }
631ca3d3a14SMatthew G. Knepley       }
63263a3b9bcSJacob Faibussowitsch       PetscCheck(c == lda, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid number of columns %" PetscInt_FMT " should be %" PetscInt_FMT, c, lda);
633ca3d3a14SMatthew G. Knepley       r += fdof;
634ca3d3a14SMatthew G. Knepley     }
635ca3d3a14SMatthew G. Knepley   }
63663a3b9bcSJacob Faibussowitsch   PetscCheck(r == lda, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid number of rows %" PetscInt_FMT " should be %" PetscInt_FMT, c, lda);
6379566063dSJacob Faibussowitsch   PetscCall(DMPlexRestoreCompressedClosure(dm, s, p, &Np, &points, &clSection, &clPoints, &clp));
6383ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
639ca3d3a14SMatthew G. Knepley }
640ca3d3a14SMatthew G. Knepley 
641d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexBasisTransform_Internal(DM dm, Vec lv, PetscBool l2g)
642d71ae5a4SJacob Faibussowitsch {
643ca3d3a14SMatthew G. Knepley   DM                 tdm;
644ca3d3a14SMatthew G. Knepley   Vec                tv;
645ca3d3a14SMatthew G. Knepley   PetscSection       ts, s;
646ca3d3a14SMatthew G. Knepley   const PetscScalar *ta;
647ca3d3a14SMatthew G. Knepley   PetscScalar       *a, *va;
648ca3d3a14SMatthew G. Knepley   PetscInt           pStart, pEnd, p, Nf, f;
649ca3d3a14SMatthew G. Knepley 
650ca3d3a14SMatthew G. Knepley   PetscFunctionBegin;
6519566063dSJacob Faibussowitsch   PetscCall(DMGetBasisTransformDM_Internal(dm, &tdm));
6529566063dSJacob Faibussowitsch   PetscCall(DMGetBasisTransformVec_Internal(dm, &tv));
6539566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(tdm, &ts));
6549566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dm, &s));
6559566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetChart(s, &pStart, &pEnd));
6569566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetNumFields(s, &Nf));
6579566063dSJacob Faibussowitsch   PetscCall(VecGetArray(lv, &a));
6589566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(tv, &ta));
659ca3d3a14SMatthew G. Knepley   for (p = pStart; p < pEnd; ++p) {
660ca3d3a14SMatthew G. Knepley     for (f = 0; f < Nf; ++f) {
6619566063dSJacob Faibussowitsch       PetscCall(DMPlexPointLocalFieldRef(dm, p, f, a, &va));
6629566063dSJacob Faibussowitsch       PetscCall(DMPlexBasisTransformField_Internal(dm, tdm, tv, p, f, l2g, va));
663ca3d3a14SMatthew G. Knepley     }
664ca3d3a14SMatthew G. Knepley   }
6659566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(lv, &a));
6669566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(tv, &ta));
6673ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
668ca3d3a14SMatthew G. Knepley }
669ca3d3a14SMatthew G. Knepley 
670ca3d3a14SMatthew G. Knepley /*@
671ca3d3a14SMatthew G. Knepley   DMPlexGlobalToLocalBasis - Transform the values in the given local vector from the global basis to the local basis
672ca3d3a14SMatthew G. Knepley 
673ca3d3a14SMatthew G. Knepley   Input Parameters:
674a1cb98faSBarry Smith + dm - The `DM`
675ca3d3a14SMatthew G. Knepley - lv - A local vector with values in the global basis
676ca3d3a14SMatthew G. Knepley 
6772fe279fdSBarry Smith   Output Parameter:
678ca3d3a14SMatthew G. Knepley . lv - A local vector with values in the local basis
679ca3d3a14SMatthew G. Knepley 
680ca3d3a14SMatthew G. Knepley   Level: developer
681ca3d3a14SMatthew G. Knepley 
682a1cb98faSBarry Smith   Note:
683a1cb98faSBarry Smith   This method is only intended to be called inside `DMGlobalToLocal()`. It is unlikely that a user will have a local vector full of coefficients for the global basis unless they are reimplementing GlobalToLocal.
684a1cb98faSBarry Smith 
6851cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexLocalToGlobalBasis()`, `DMGetLocalSection()`, `DMPlexCreateBasisRotation()`
686ca3d3a14SMatthew G. Knepley @*/
687d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexGlobalToLocalBasis(DM dm, Vec lv)
688d71ae5a4SJacob Faibussowitsch {
689ca3d3a14SMatthew G. Knepley   PetscFunctionBegin;
690ca3d3a14SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
691ca3d3a14SMatthew G. Knepley   PetscValidHeaderSpecific(lv, VEC_CLASSID, 2);
6929566063dSJacob Faibussowitsch   PetscCall(DMPlexBasisTransform_Internal(dm, lv, PETSC_FALSE));
6933ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
694ca3d3a14SMatthew G. Knepley }
695ca3d3a14SMatthew G. Knepley 
696ca3d3a14SMatthew G. Knepley /*@
697ca3d3a14SMatthew G. Knepley   DMPlexLocalToGlobalBasis - Transform the values in the given local vector from the local basis to the global basis
698ca3d3a14SMatthew G. Knepley 
699ca3d3a14SMatthew G. Knepley   Input Parameters:
700a1cb98faSBarry Smith + dm - The `DM`
701ca3d3a14SMatthew G. Knepley - lv - A local vector with values in the local basis
702ca3d3a14SMatthew G. Knepley 
7032fe279fdSBarry Smith   Output Parameter:
704ca3d3a14SMatthew G. Knepley . lv - A local vector with values in the global basis
705ca3d3a14SMatthew G. Knepley 
706ca3d3a14SMatthew G. Knepley   Level: developer
707ca3d3a14SMatthew G. Knepley 
708a1cb98faSBarry Smith   Note:
709a1cb98faSBarry Smith   This method is only intended to be called inside `DMGlobalToLocal()`. It is unlikely that a user would want a local vector full of coefficients for the global basis unless they are reimplementing GlobalToLocal.
710a1cb98faSBarry Smith 
7111cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexGlobalToLocalBasis()`, `DMGetLocalSection()`, `DMPlexCreateBasisRotation()`
712ca3d3a14SMatthew G. Knepley @*/
713d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexLocalToGlobalBasis(DM dm, Vec lv)
714d71ae5a4SJacob Faibussowitsch {
715ca3d3a14SMatthew G. Knepley   PetscFunctionBegin;
716ca3d3a14SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
717ca3d3a14SMatthew G. Knepley   PetscValidHeaderSpecific(lv, VEC_CLASSID, 2);
7189566063dSJacob Faibussowitsch   PetscCall(DMPlexBasisTransform_Internal(dm, lv, PETSC_TRUE));
7193ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
720ca3d3a14SMatthew G. Knepley }
721ca3d3a14SMatthew G. Knepley 
722ca3d3a14SMatthew G. Knepley /*@
723ca3d3a14SMatthew G. Knepley   DMPlexCreateBasisRotation - Create an internal transformation from the global basis, used to specify boundary conditions
724ca3d3a14SMatthew G. Knepley   and global solutions, to a local basis, appropriate for discretization integrals and assembly.
725ca3d3a14SMatthew G. Knepley 
726ca3d3a14SMatthew G. Knepley   Input Parameters:
727a1cb98faSBarry Smith + dm    - The `DM`
728ca3d3a14SMatthew G. Knepley . alpha - The first Euler angle, and in 2D the only one
729ca3d3a14SMatthew G. Knepley . beta  - The second Euler angle
730f0fc11ceSJed Brown - gamma - The third Euler angle
731ca3d3a14SMatthew G. Knepley 
732ca3d3a14SMatthew G. Knepley   Level: developer
733ca3d3a14SMatthew G. Knepley 
734a1cb98faSBarry Smith   Note:
735a1cb98faSBarry Smith   Following https://en.wikipedia.org/wiki/Euler_angles, we will specify Euler angles by extrinsic rotations, meaning that
736a1cb98faSBarry Smith   we rotate with respect to a fixed initial coordinate system, the local basis (x-y-z). The global basis (X-Y-Z) is reached as follows
737a1cb98faSBarry Smith .vb
738a1cb98faSBarry Smith    The XYZ system rotates about the z axis by alpha. The X axis is now at angle alpha with respect to the x axis.
739a1cb98faSBarry Smith    The XYZ system rotates again about the x axis by beta. The Z axis is now at angle beta with respect to the z axis.
740a1cb98faSBarry Smith    The XYZ system rotates a third time about the z axis by gamma.
741a1cb98faSBarry Smith .ve
742a1cb98faSBarry Smith 
7431cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexGlobalToLocalBasis()`, `DMPlexLocalToGlobalBasis()`
744ca3d3a14SMatthew G. Knepley @*/
745d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexCreateBasisRotation(DM dm, PetscReal alpha, PetscReal beta, PetscReal gamma)
746d71ae5a4SJacob Faibussowitsch {
747ca3d3a14SMatthew G. Knepley   RotCtx  *rc;
748ca3d3a14SMatthew G. Knepley   PetscInt cdim;
749ca3d3a14SMatthew G. Knepley 
750362febeeSStefano Zampini   PetscFunctionBegin;
7519566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateDim(dm, &cdim));
7529566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(1, &rc));
753ca3d3a14SMatthew G. Knepley   dm->transformCtx       = rc;
754ca3d3a14SMatthew G. Knepley   dm->transformSetUp     = DMPlexBasisTransformSetUp_Rotation_Internal;
755ca3d3a14SMatthew G. Knepley   dm->transformDestroy   = DMPlexBasisTransformDestroy_Rotation_Internal;
756ca3d3a14SMatthew G. Knepley   dm->transformGetMatrix = DMPlexBasisTransformGetMatrix_Rotation_Internal;
757ca3d3a14SMatthew G. Knepley   rc->dim                = cdim;
758ca3d3a14SMatthew G. Knepley   rc->alpha              = alpha;
759ca3d3a14SMatthew G. Knepley   rc->beta               = beta;
760ca3d3a14SMatthew G. Knepley   rc->gamma              = gamma;
7619566063dSJacob Faibussowitsch   PetscCall((*dm->transformSetUp)(dm, dm->transformCtx));
7629566063dSJacob Faibussowitsch   PetscCall(DMConstructBasisTransform_Internal(dm));
7633ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
764ca3d3a14SMatthew G. Knepley }
765ca3d3a14SMatthew G. Knepley 
766b278463cSMatthew G. Knepley /*@C
767ece3a9fcSMatthew G. Knepley   DMPlexInsertBoundaryValuesEssential - Insert boundary values into a local vector using a function of the coordinates
768b278463cSMatthew G. Knepley 
769b278463cSMatthew G. Knepley   Input Parameters:
770a1cb98faSBarry Smith + dm     - The `DM`, with a `PetscDS` that matches the problem being constrained
771b278463cSMatthew G. Knepley . time   - The time
772b278463cSMatthew G. Knepley . field  - The field to constrain
7731c531cf8SMatthew G. Knepley . Nc     - The number of constrained field components, or 0 for all components
77420f4b53cSBarry Smith . comps  - An array of constrained component numbers, or `NULL` for all components
775a1cb98faSBarry Smith . label  - The `DMLabel` defining constrained points
776a1cb98faSBarry Smith . numids - The number of `DMLabel` ids for constrained points
777b278463cSMatthew G. Knepley . ids    - An array of ids for constrained points
778b278463cSMatthew G. Knepley . func   - A pointwise function giving boundary values
779b278463cSMatthew G. Knepley - ctx    - An optional user context for bcFunc
780b278463cSMatthew G. Knepley 
781b278463cSMatthew G. Knepley   Output Parameter:
782b278463cSMatthew G. Knepley . locX - A local vector to receives the boundary values
783b278463cSMatthew G. Knepley 
784b278463cSMatthew G. Knepley   Level: developer
785b278463cSMatthew G. Knepley 
7861cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMLabel`, `DMPlexInsertBoundaryValuesEssentialField()`, `DMPlexInsertBoundaryValuesEssentialBdField()`, `DMAddBoundary()`
787b278463cSMatthew G. Knepley @*/
788d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexInsertBoundaryValuesEssential(DM dm, PetscReal time, PetscInt field, PetscInt Nc, const PetscInt comps[], DMLabel label, PetscInt numids, const PetscInt ids[], PetscErrorCode (*func)(PetscInt, PetscReal, const PetscReal[], PetscInt, PetscScalar *, void *), void *ctx, Vec locX)
789d71ae5a4SJacob Faibussowitsch {
7900163fd50SMatthew G. Knepley   PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal x[], PetscInt, PetscScalar *u, void *ctx);
79155f2e967SMatthew G. Knepley   void   **ctxs;
792d7ddef95SMatthew G. Knepley   PetscInt numFields;
793d7ddef95SMatthew G. Knepley 
794d7ddef95SMatthew G. Knepley   PetscFunctionBegin;
7959566063dSJacob Faibussowitsch   PetscCall(DMGetNumFields(dm, &numFields));
7969566063dSJacob Faibussowitsch   PetscCall(PetscCalloc2(numFields, &funcs, numFields, &ctxs));
797d7ddef95SMatthew G. Knepley   funcs[field] = func;
798d7ddef95SMatthew G. Knepley   ctxs[field]  = ctx;
7999566063dSJacob Faibussowitsch   PetscCall(DMProjectFunctionLabelLocal(dm, time, label, numids, ids, Nc, comps, funcs, ctxs, INSERT_BC_VALUES, locX));
8009566063dSJacob Faibussowitsch   PetscCall(PetscFree2(funcs, ctxs));
8013ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
802d7ddef95SMatthew G. Knepley }
803d7ddef95SMatthew G. Knepley 
804b278463cSMatthew G. Knepley /*@C
805ece3a9fcSMatthew G. Knepley   DMPlexInsertBoundaryValuesEssentialField - Insert boundary values into a local vector using a function of the coordinates and field data
806b278463cSMatthew G. Knepley 
807b278463cSMatthew G. Knepley   Input Parameters:
808a1cb98faSBarry Smith + dm     - The `DM`, with a `PetscDS` that matches the problem being constrained
809b278463cSMatthew G. Knepley . time   - The time
810b278463cSMatthew G. Knepley . locU   - A local vector with the input solution values
811b278463cSMatthew G. Knepley . field  - The field to constrain
8121c531cf8SMatthew G. Knepley . Nc     - The number of constrained field components, or 0 for all components
81320f4b53cSBarry Smith . comps  - An array of constrained component numbers, or `NULL` for all components
814a1cb98faSBarry Smith . label  - The `DMLabel` defining constrained points
815a1cb98faSBarry Smith . numids - The number of `DMLabel` ids for constrained points
816b278463cSMatthew G. Knepley . ids    - An array of ids for constrained points
817b278463cSMatthew G. Knepley . func   - A pointwise function giving boundary values
818b278463cSMatthew G. Knepley - ctx    - An optional user context for bcFunc
819b278463cSMatthew G. Knepley 
820b278463cSMatthew G. Knepley   Output Parameter:
821b278463cSMatthew G. Knepley . locX - A local vector to receives the boundary values
822b278463cSMatthew G. Knepley 
823b278463cSMatthew G. Knepley   Level: developer
824b278463cSMatthew G. Knepley 
8251cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexInsertBoundaryValuesEssential()`, `DMPlexInsertBoundaryValuesEssentialBdField()`, `DMAddBoundary()`
826b278463cSMatthew G. Knepley @*/
827d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexInsertBoundaryValuesEssentialField(DM dm, PetscReal time, Vec locU, PetscInt field, PetscInt Nc, const PetscInt comps[], DMLabel label, PetscInt numids, const PetscInt ids[], void (*func)(PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], PetscReal, const PetscReal[], PetscInt, const PetscScalar[], PetscScalar[]), void *ctx, Vec locX)
828d71ae5a4SJacob Faibussowitsch {
8299371c9d4SSatish Balay   void (**funcs)(PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], PetscReal, const PetscReal[], PetscInt, const PetscScalar[], PetscScalar[]);
830c60e475cSMatthew G. Knepley   void   **ctxs;
831c60e475cSMatthew G. Knepley   PetscInt numFields;
832c60e475cSMatthew G. Knepley 
833c60e475cSMatthew G. Knepley   PetscFunctionBegin;
8349566063dSJacob Faibussowitsch   PetscCall(DMGetNumFields(dm, &numFields));
8359566063dSJacob Faibussowitsch   PetscCall(PetscCalloc2(numFields, &funcs, numFields, &ctxs));
836c60e475cSMatthew G. Knepley   funcs[field] = func;
837c60e475cSMatthew G. Knepley   ctxs[field]  = ctx;
8389566063dSJacob Faibussowitsch   PetscCall(DMProjectFieldLabelLocal(dm, time, label, numids, ids, Nc, comps, locU, funcs, INSERT_BC_VALUES, locX));
8399566063dSJacob Faibussowitsch   PetscCall(PetscFree2(funcs, ctxs));
8403ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
841c60e475cSMatthew G. Knepley }
842c60e475cSMatthew G. Knepley 
843b278463cSMatthew G. Knepley /*@C
844d5b43468SJose E. Roman   DMPlexInsertBoundaryValuesEssentialBdField - Insert boundary values into a local vector using a function of the coordinates and boundary field data
845ece3a9fcSMatthew G. Knepley 
84620f4b53cSBarry Smith   Collective
847ece3a9fcSMatthew G. Knepley 
848ece3a9fcSMatthew G. Knepley   Input Parameters:
849a1cb98faSBarry Smith + dm     - The `DM`, with a `PetscDS` that matches the problem being constrained
850ece3a9fcSMatthew G. Knepley . time   - The time
851ece3a9fcSMatthew G. Knepley . locU   - A local vector with the input solution values
852ece3a9fcSMatthew G. Knepley . field  - The field to constrain
853ece3a9fcSMatthew G. Knepley . Nc     - The number of constrained field components, or 0 for all components
85420f4b53cSBarry Smith . comps  - An array of constrained component numbers, or `NULL` for all components
855a1cb98faSBarry Smith . label  - The `DMLabel` defining constrained points
856a1cb98faSBarry Smith . numids - The number of `DMLabel` ids for constrained points
857ece3a9fcSMatthew G. Knepley . ids    - An array of ids for constrained points
85820f4b53cSBarry Smith . func   - A pointwise function giving boundary values, the calling sequence is given in `DMProjectBdFieldLabelLocal()`
85920f4b53cSBarry Smith - ctx    - An optional user context for `func`
860ece3a9fcSMatthew G. Knepley 
861ece3a9fcSMatthew G. Knepley   Output Parameter:
862ece3a9fcSMatthew G. Knepley . locX - A local vector to receive the boundary values
863ece3a9fcSMatthew G. Knepley 
864ece3a9fcSMatthew G. Knepley   Level: developer
865ece3a9fcSMatthew G. Knepley 
8661cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMProjectBdFieldLabelLocal()`, `DMPlexInsertBoundaryValuesEssential()`, `DMPlexInsertBoundaryValuesEssentialField()`, `DMAddBoundary()`
867ece3a9fcSMatthew G. Knepley @*/
868d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexInsertBoundaryValuesEssentialBdField(DM dm, PetscReal time, Vec locU, PetscInt field, PetscInt Nc, const PetscInt comps[], DMLabel label, PetscInt numids, const PetscInt ids[], void (*func)(PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], PetscReal, const PetscReal[], const PetscReal[], PetscInt, const PetscScalar[], PetscScalar[]), void *ctx, Vec locX)
869d71ae5a4SJacob Faibussowitsch {
8709371c9d4SSatish Balay   void (**funcs)(PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], PetscReal, const PetscReal[], const PetscReal[], PetscInt, const PetscScalar[], PetscScalar[]);
871ece3a9fcSMatthew G. Knepley   void   **ctxs;
872ece3a9fcSMatthew G. Knepley   PetscInt numFields;
873ece3a9fcSMatthew G. Knepley 
874ece3a9fcSMatthew G. Knepley   PetscFunctionBegin;
8759566063dSJacob Faibussowitsch   PetscCall(DMGetNumFields(dm, &numFields));
8769566063dSJacob Faibussowitsch   PetscCall(PetscCalloc2(numFields, &funcs, numFields, &ctxs));
877ece3a9fcSMatthew G. Knepley   funcs[field] = func;
878ece3a9fcSMatthew G. Knepley   ctxs[field]  = ctx;
8799566063dSJacob Faibussowitsch   PetscCall(DMProjectBdFieldLabelLocal(dm, time, label, numids, ids, Nc, comps, locU, funcs, INSERT_BC_VALUES, locX));
8809566063dSJacob Faibussowitsch   PetscCall(PetscFree2(funcs, ctxs));
8813ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
882ece3a9fcSMatthew G. Knepley }
883ece3a9fcSMatthew G. Knepley 
884ece3a9fcSMatthew G. Knepley /*@C
885b278463cSMatthew G. Knepley   DMPlexInsertBoundaryValuesRiemann - Insert boundary values into a local vector
886b278463cSMatthew G. Knepley 
887b278463cSMatthew G. Knepley   Input Parameters:
888a1cb98faSBarry Smith + dm           - The `DM`, with a `PetscDS` that matches the problem being constrained
889b278463cSMatthew G. Knepley . time         - The time
890b278463cSMatthew G. Knepley . faceGeometry - A vector with the FVM face geometry information
891b278463cSMatthew G. Knepley . cellGeometry - A vector with the FVM cell geometry information
892b278463cSMatthew G. Knepley . Grad         - A vector with the FVM cell gradient information
893b278463cSMatthew G. Knepley . field        - The field to constrain
8941c531cf8SMatthew G. Knepley . Nc           - The number of constrained field components, or 0 for all components
89520f4b53cSBarry Smith . comps        - An array of constrained component numbers, or `NULL` for all components
896a1cb98faSBarry Smith . label        - The `DMLabel` defining constrained points
897a1cb98faSBarry Smith . numids       - The number of `DMLabel` ids for constrained points
898b278463cSMatthew G. Knepley . ids          - An array of ids for constrained points
899b278463cSMatthew G. Knepley . func         - A pointwise function giving boundary values
900b278463cSMatthew G. Knepley - ctx          - An optional user context for bcFunc
901b278463cSMatthew G. Knepley 
902b278463cSMatthew G. Knepley   Output Parameter:
903b278463cSMatthew G. Knepley . locX - A local vector to receives the boundary values
904b278463cSMatthew G. Knepley 
905b278463cSMatthew G. Knepley   Level: developer
906b278463cSMatthew G. Knepley 
907a1cb98faSBarry Smith   Note:
908a1cb98faSBarry Smith   This implementation currently ignores the numcomps/comps argument from `DMAddBoundary()`
909a1cb98faSBarry Smith 
9101cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexInsertBoundaryValuesEssential()`, `DMPlexInsertBoundaryValuesEssentialField()`, `DMAddBoundary()`
911b278463cSMatthew G. Knepley @*/
912d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexInsertBoundaryValuesRiemann(DM dm, PetscReal time, Vec faceGeometry, Vec cellGeometry, Vec Grad, PetscInt field, PetscInt Nc, const PetscInt comps[], DMLabel label, PetscInt numids, const PetscInt ids[], PetscErrorCode (*func)(PetscReal, const PetscReal *, const PetscReal *, const PetscScalar *, PetscScalar *, void *), void *ctx, Vec locX)
913d71ae5a4SJacob Faibussowitsch {
91461f58d28SMatthew G. Knepley   PetscDS            prob;
915da97024aSMatthew G. Knepley   PetscSF            sf;
916d7ddef95SMatthew G. Knepley   DM                 dmFace, dmCell, dmGrad;
91720369375SToby Isaac   const PetscScalar *facegeom, *cellgeom = NULL, *grad;
918da97024aSMatthew G. Knepley   const PetscInt    *leaves;
919d7ddef95SMatthew G. Knepley   PetscScalar       *x, *fx;
920520b3818SMatthew G. Knepley   PetscInt           dim, nleaves, loc, fStart, fEnd, pdim, i;
9213ba16761SJacob Faibussowitsch   PetscErrorCode     ierru = PETSC_SUCCESS;
922d7ddef95SMatthew G. Knepley 
923d7ddef95SMatthew G. Knepley   PetscFunctionBegin;
9249566063dSJacob Faibussowitsch   PetscCall(DMGetPointSF(dm, &sf));
9259566063dSJacob Faibussowitsch   PetscCall(PetscSFGetGraph(sf, NULL, &nleaves, &leaves, NULL));
926da97024aSMatthew G. Knepley   nleaves = PetscMax(0, nleaves);
9279566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dm, &dim));
9289566063dSJacob Faibussowitsch   PetscCall(DMPlexGetHeightStratum(dm, 1, &fStart, &fEnd));
9299566063dSJacob Faibussowitsch   PetscCall(DMGetDS(dm, &prob));
9309566063dSJacob Faibussowitsch   PetscCall(VecGetDM(faceGeometry, &dmFace));
9319566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(faceGeometry, &facegeom));
93220369375SToby Isaac   if (cellGeometry) {
9339566063dSJacob Faibussowitsch     PetscCall(VecGetDM(cellGeometry, &dmCell));
9349566063dSJacob Faibussowitsch     PetscCall(VecGetArrayRead(cellGeometry, &cellgeom));
93520369375SToby Isaac   }
936d7ddef95SMatthew G. Knepley   if (Grad) {
937c0a6632aSMatthew G. Knepley     PetscFV fv;
938c0a6632aSMatthew G. Knepley 
9399566063dSJacob Faibussowitsch     PetscCall(PetscDSGetDiscretization(prob, field, (PetscObject *)&fv));
9409566063dSJacob Faibussowitsch     PetscCall(VecGetDM(Grad, &dmGrad));
9419566063dSJacob Faibussowitsch     PetscCall(VecGetArrayRead(Grad, &grad));
9429566063dSJacob Faibussowitsch     PetscCall(PetscFVGetNumComponents(fv, &pdim));
9439566063dSJacob Faibussowitsch     PetscCall(DMGetWorkArray(dm, pdim, MPIU_SCALAR, &fx));
944d7ddef95SMatthew G. Knepley   }
9459566063dSJacob Faibussowitsch   PetscCall(VecGetArray(locX, &x));
946d7ddef95SMatthew G. Knepley   for (i = 0; i < numids; ++i) {
947d7ddef95SMatthew G. Knepley     IS              faceIS;
948d7ddef95SMatthew G. Knepley     const PetscInt *faces;
949d7ddef95SMatthew G. Knepley     PetscInt        numFaces, f;
950d7ddef95SMatthew G. Knepley 
9519566063dSJacob Faibussowitsch     PetscCall(DMLabelGetStratumIS(label, ids[i], &faceIS));
952d7ddef95SMatthew G. Knepley     if (!faceIS) continue; /* No points with that id on this process */
9539566063dSJacob Faibussowitsch     PetscCall(ISGetLocalSize(faceIS, &numFaces));
9549566063dSJacob Faibussowitsch     PetscCall(ISGetIndices(faceIS, &faces));
955d7ddef95SMatthew G. Knepley     for (f = 0; f < numFaces; ++f) {
956d7ddef95SMatthew G. Knepley       const PetscInt   face = faces[f], *cells;
957640bce14SSatish Balay       PetscFVFaceGeom *fg;
958d7ddef95SMatthew G. Knepley 
959d7ddef95SMatthew G. Knepley       if ((face < fStart) || (face >= fEnd)) continue; /* Refinement adds non-faces to labels */
9609566063dSJacob Faibussowitsch       PetscCall(PetscFindInt(face, nleaves, (PetscInt *)leaves, &loc));
961da97024aSMatthew G. Knepley       if (loc >= 0) continue;
9629566063dSJacob Faibussowitsch       PetscCall(DMPlexPointLocalRead(dmFace, face, facegeom, &fg));
9639566063dSJacob Faibussowitsch       PetscCall(DMPlexGetSupport(dm, face, &cells));
964d7ddef95SMatthew G. Knepley       if (Grad) {
965640bce14SSatish Balay         PetscFVCellGeom *cg;
966640bce14SSatish Balay         PetscScalar     *cx, *cgrad;
967d7ddef95SMatthew G. Knepley         PetscScalar     *xG;
968d7ddef95SMatthew G. Knepley         PetscReal        dx[3];
969d7ddef95SMatthew G. Knepley         PetscInt         d;
970d7ddef95SMatthew G. Knepley 
9719566063dSJacob Faibussowitsch         PetscCall(DMPlexPointLocalRead(dmCell, cells[0], cellgeom, &cg));
9729566063dSJacob Faibussowitsch         PetscCall(DMPlexPointLocalRead(dm, cells[0], x, &cx));
9739566063dSJacob Faibussowitsch         PetscCall(DMPlexPointLocalRead(dmGrad, cells[0], grad, &cgrad));
9749566063dSJacob Faibussowitsch         PetscCall(DMPlexPointLocalFieldRef(dm, cells[1], field, x, &xG));
975d7ddef95SMatthew G. Knepley         DMPlex_WaxpyD_Internal(dim, -1, cg->centroid, fg->centroid, dx);
976d7ddef95SMatthew G. Knepley         for (d = 0; d < pdim; ++d) fx[d] = cx[d] + DMPlex_DotD_Internal(dim, &cgrad[d * dim], dx);
9779566063dSJacob Faibussowitsch         PetscCall((*func)(time, fg->centroid, fg->normal, fx, xG, ctx));
978d7ddef95SMatthew G. Knepley       } else {
979640bce14SSatish Balay         PetscScalar *xI;
980d7ddef95SMatthew G. Knepley         PetscScalar *xG;
981d7ddef95SMatthew G. Knepley 
9829566063dSJacob Faibussowitsch         PetscCall(DMPlexPointLocalRead(dm, cells[0], x, &xI));
9839566063dSJacob Faibussowitsch         PetscCall(DMPlexPointLocalFieldRef(dm, cells[1], field, x, &xG));
984e735a8a9SMatthew G. Knepley         ierru = (*func)(time, fg->centroid, fg->normal, xI, xG, ctx);
985e735a8a9SMatthew G. Knepley         if (ierru) {
9869566063dSJacob Faibussowitsch           PetscCall(ISRestoreIndices(faceIS, &faces));
9879566063dSJacob Faibussowitsch           PetscCall(ISDestroy(&faceIS));
988e735a8a9SMatthew G. Knepley           goto cleanup;
989e735a8a9SMatthew G. Knepley         }
990d7ddef95SMatthew G. Knepley       }
991d7ddef95SMatthew G. Knepley     }
9929566063dSJacob Faibussowitsch     PetscCall(ISRestoreIndices(faceIS, &faces));
9939566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&faceIS));
994d7ddef95SMatthew G. Knepley   }
995e735a8a9SMatthew G. Knepley cleanup:
9969566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(locX, &x));
997d7ddef95SMatthew G. Knepley   if (Grad) {
9989566063dSJacob Faibussowitsch     PetscCall(DMRestoreWorkArray(dm, pdim, MPIU_SCALAR, &fx));
9999566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayRead(Grad, &grad));
1000d7ddef95SMatthew G. Knepley   }
10019566063dSJacob Faibussowitsch   if (cellGeometry) PetscCall(VecRestoreArrayRead(cellGeometry, &cellgeom));
10029566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(faceGeometry, &facegeom));
10039566063dSJacob Faibussowitsch   PetscCall(ierru);
10043ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1005d7ddef95SMatthew G. Knepley }
1006d7ddef95SMatthew G. Knepley 
1007d71ae5a4SJacob Faibussowitsch static PetscErrorCode zero(PetscInt dim, PetscReal time, const PetscReal x[], PetscInt Nc, PetscScalar *u, void *ctx)
1008d71ae5a4SJacob Faibussowitsch {
10090c364540SMatthew G. Knepley   PetscInt c;
10100c364540SMatthew G. Knepley   for (c = 0; c < Nc; ++c) u[c] = 0.0;
10113ba16761SJacob Faibussowitsch   return PETSC_SUCCESS;
10120c364540SMatthew G. Knepley }
10130c364540SMatthew G. Knepley 
1014d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexInsertBoundaryValues_Plex(DM dm, PetscBool insertEssential, Vec locX, PetscReal time, Vec faceGeomFVM, Vec cellGeomFVM, Vec gradFVM)
1015d71ae5a4SJacob Faibussowitsch {
10160c364540SMatthew G. Knepley   PetscObject isZero;
1017e5e52638SMatthew G. Knepley   PetscDS     prob;
1018d7ddef95SMatthew G. Knepley   PetscInt    numBd, b;
101955f2e967SMatthew G. Knepley 
102055f2e967SMatthew G. Knepley   PetscFunctionBegin;
10219566063dSJacob Faibussowitsch   PetscCall(DMGetDS(dm, &prob));
10229566063dSJacob Faibussowitsch   PetscCall(PetscDSGetNumBoundary(prob, &numBd));
10239566063dSJacob Faibussowitsch   PetscCall(PetscObjectQuery((PetscObject)locX, "__Vec_bc_zero__", &isZero));
102455f2e967SMatthew G. Knepley   for (b = 0; b < numBd; ++b) {
102545480ffeSMatthew G. Knepley     PetscWeakForm           wf;
1026f971fd6bSMatthew G. Knepley     DMBoundaryConditionType type;
102745480ffeSMatthew G. Knepley     const char             *name;
1028d7ddef95SMatthew G. Knepley     DMLabel                 label;
10291c531cf8SMatthew G. Knepley     PetscInt                field, Nc;
10301c531cf8SMatthew G. Knepley     const PetscInt         *comps;
1031d7ddef95SMatthew G. Knepley     PetscObject             obj;
1032d7ddef95SMatthew G. Knepley     PetscClassId            id;
103345480ffeSMatthew G. Knepley     void (*bvfunc)(void);
1034d7ddef95SMatthew G. Knepley     PetscInt        numids;
1035d7ddef95SMatthew G. Knepley     const PetscInt *ids;
103655f2e967SMatthew G. Knepley     void           *ctx;
103755f2e967SMatthew G. Knepley 
10389566063dSJacob Faibussowitsch     PetscCall(PetscDSGetBoundary(prob, b, &wf, &type, &name, &label, &numids, &ids, &field, &Nc, &comps, &bvfunc, NULL, &ctx));
1039f971fd6bSMatthew G. Knepley     if (insertEssential != (type & DM_BC_ESSENTIAL)) continue;
10409566063dSJacob Faibussowitsch     PetscCall(DMGetField(dm, field, NULL, &obj));
10419566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetClassId(obj, &id));
1042d7ddef95SMatthew G. Knepley     if (id == PETSCFE_CLASSID) {
1043c60e475cSMatthew G. Knepley       switch (type) {
1044c60e475cSMatthew G. Knepley         /* for FEM, there is no insertion to be done for non-essential boundary conditions */
10459371c9d4SSatish Balay       case DM_BC_ESSENTIAL: {
104645480ffeSMatthew G. Knepley         PetscSimplePointFunc func = (PetscSimplePointFunc)bvfunc;
104745480ffeSMatthew G. Knepley 
104845480ffeSMatthew G. Knepley         if (isZero) func = zero;
10499566063dSJacob Faibussowitsch         PetscCall(DMPlexLabelAddCells(dm, label));
10509566063dSJacob Faibussowitsch         PetscCall(DMPlexInsertBoundaryValuesEssential(dm, time, field, Nc, comps, label, numids, ids, func, ctx, locX));
10519566063dSJacob Faibussowitsch         PetscCall(DMPlexLabelClearCells(dm, label));
10529371c9d4SSatish Balay       } break;
10539371c9d4SSatish Balay       case DM_BC_ESSENTIAL_FIELD: {
105445480ffeSMatthew G. Knepley         PetscPointFunc func = (PetscPointFunc)bvfunc;
105545480ffeSMatthew G. Knepley 
10569566063dSJacob Faibussowitsch         PetscCall(DMPlexLabelAddCells(dm, label));
10579566063dSJacob Faibussowitsch         PetscCall(DMPlexInsertBoundaryValuesEssentialField(dm, time, locX, field, Nc, comps, label, numids, ids, func, ctx, locX));
10589566063dSJacob Faibussowitsch         PetscCall(DMPlexLabelClearCells(dm, label));
10599371c9d4SSatish Balay       } break;
1060d71ae5a4SJacob Faibussowitsch       default:
1061d71ae5a4SJacob Faibussowitsch         break;
1062c60e475cSMatthew G. Knepley       }
1063d7ddef95SMatthew G. Knepley     } else if (id == PETSCFV_CLASSID) {
106445480ffeSMatthew G. Knepley       {
106545480ffeSMatthew G. Knepley         PetscErrorCode (*func)(PetscReal, const PetscReal *, const PetscReal *, const PetscScalar *, PetscScalar *, void *) = (PetscErrorCode(*)(PetscReal, const PetscReal *, const PetscReal *, const PetscScalar *, PetscScalar *, void *))bvfunc;
106645480ffeSMatthew G. Knepley 
106743ea7facSMatthew G. Knepley         if (!faceGeomFVM) continue;
10689566063dSJacob Faibussowitsch         PetscCall(DMPlexInsertBoundaryValuesRiemann(dm, time, faceGeomFVM, cellGeomFVM, gradFVM, field, Nc, comps, label, numids, ids, func, ctx, locX));
106945480ffeSMatthew G. Knepley       }
107063a3b9bcSJacob Faibussowitsch     } else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, field);
107155f2e967SMatthew G. Knepley   }
10723ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
107355f2e967SMatthew G. Knepley }
107455f2e967SMatthew G. Knepley 
1075d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexInsertTimeDerivativeBoundaryValues_Plex(DM dm, PetscBool insertEssential, Vec locX, PetscReal time, Vec faceGeomFVM, Vec cellGeomFVM, Vec gradFVM)
1076d71ae5a4SJacob Faibussowitsch {
107756cf3b9cSMatthew G. Knepley   PetscObject isZero;
107856cf3b9cSMatthew G. Knepley   PetscDS     prob;
107956cf3b9cSMatthew G. Knepley   PetscInt    numBd, b;
108056cf3b9cSMatthew G. Knepley 
108156cf3b9cSMatthew G. Knepley   PetscFunctionBegin;
10823ba16761SJacob Faibussowitsch   if (!locX) PetscFunctionReturn(PETSC_SUCCESS);
10839566063dSJacob Faibussowitsch   PetscCall(DMGetDS(dm, &prob));
10849566063dSJacob Faibussowitsch   PetscCall(PetscDSGetNumBoundary(prob, &numBd));
10859566063dSJacob Faibussowitsch   PetscCall(PetscObjectQuery((PetscObject)locX, "__Vec_bc_zero__", &isZero));
108656cf3b9cSMatthew G. Knepley   for (b = 0; b < numBd; ++b) {
108745480ffeSMatthew G. Knepley     PetscWeakForm           wf;
108856cf3b9cSMatthew G. Knepley     DMBoundaryConditionType type;
108945480ffeSMatthew G. Knepley     const char             *name;
109056cf3b9cSMatthew G. Knepley     DMLabel                 label;
109156cf3b9cSMatthew G. Knepley     PetscInt                field, Nc;
109256cf3b9cSMatthew G. Knepley     const PetscInt         *comps;
109356cf3b9cSMatthew G. Knepley     PetscObject             obj;
109456cf3b9cSMatthew G. Knepley     PetscClassId            id;
109556cf3b9cSMatthew G. Knepley     PetscInt                numids;
109656cf3b9cSMatthew G. Knepley     const PetscInt         *ids;
109745480ffeSMatthew G. Knepley     void (*bvfunc)(void);
109856cf3b9cSMatthew G. Knepley     void *ctx;
109956cf3b9cSMatthew G. Knepley 
11009566063dSJacob Faibussowitsch     PetscCall(PetscDSGetBoundary(prob, b, &wf, &type, &name, &label, &numids, &ids, &field, &Nc, &comps, NULL, &bvfunc, &ctx));
110156cf3b9cSMatthew G. Knepley     if (insertEssential != (type & DM_BC_ESSENTIAL)) continue;
11029566063dSJacob Faibussowitsch     PetscCall(DMGetField(dm, field, NULL, &obj));
11039566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetClassId(obj, &id));
110456cf3b9cSMatthew G. Knepley     if (id == PETSCFE_CLASSID) {
110556cf3b9cSMatthew G. Knepley       switch (type) {
110656cf3b9cSMatthew G. Knepley         /* for FEM, there is no insertion to be done for non-essential boundary conditions */
11079371c9d4SSatish Balay       case DM_BC_ESSENTIAL: {
110845480ffeSMatthew G. Knepley         PetscSimplePointFunc func_t = (PetscSimplePointFunc)bvfunc;
110945480ffeSMatthew G. Knepley 
111045480ffeSMatthew G. Knepley         if (isZero) func_t = zero;
11119566063dSJacob Faibussowitsch         PetscCall(DMPlexLabelAddCells(dm, label));
11129566063dSJacob Faibussowitsch         PetscCall(DMPlexInsertBoundaryValuesEssential(dm, time, field, Nc, comps, label, numids, ids, func_t, ctx, locX));
11139566063dSJacob Faibussowitsch         PetscCall(DMPlexLabelClearCells(dm, label));
11149371c9d4SSatish Balay       } break;
11159371c9d4SSatish Balay       case DM_BC_ESSENTIAL_FIELD: {
111645480ffeSMatthew G. Knepley         PetscPointFunc func_t = (PetscPointFunc)bvfunc;
111745480ffeSMatthew G. Knepley 
11189566063dSJacob Faibussowitsch         PetscCall(DMPlexLabelAddCells(dm, label));
11199566063dSJacob Faibussowitsch         PetscCall(DMPlexInsertBoundaryValuesEssentialField(dm, time, locX, field, Nc, comps, label, numids, ids, func_t, ctx, locX));
11209566063dSJacob Faibussowitsch         PetscCall(DMPlexLabelClearCells(dm, label));
11219371c9d4SSatish Balay       } break;
1122d71ae5a4SJacob Faibussowitsch       default:
1123d71ae5a4SJacob Faibussowitsch         break;
112456cf3b9cSMatthew G. Knepley       }
112563a3b9bcSJacob Faibussowitsch     } else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, field);
112656cf3b9cSMatthew G. Knepley   }
11273ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
112856cf3b9cSMatthew G. Knepley }
112956cf3b9cSMatthew G. Knepley 
1130f1d73a7aSMatthew G. Knepley /*@
1131f1d73a7aSMatthew G. Knepley   DMPlexInsertBoundaryValues - Puts coefficients which represent boundary values into the local solution vector
1132f1d73a7aSMatthew G. Knepley 
1133ed808b8fSJed Brown   Not Collective
1134ed808b8fSJed Brown 
1135f1d73a7aSMatthew G. Knepley   Input Parameters:
1136a1cb98faSBarry Smith + dm              - The `DM`
1137f1d73a7aSMatthew G. Knepley . insertEssential - Should I insert essential (e.g. Dirichlet) or inessential (e.g. Neumann) boundary conditions
1138f1d73a7aSMatthew G. Knepley . time            - The time
1139f1d73a7aSMatthew G. Knepley . faceGeomFVM     - Face geometry data for FV discretizations
1140f1d73a7aSMatthew G. Knepley . cellGeomFVM     - Cell geometry data for FV discretizations
1141f1d73a7aSMatthew G. Knepley - gradFVM         - Gradient reconstruction data for FV discretizations
1142f1d73a7aSMatthew G. Knepley 
11432fe279fdSBarry Smith   Output Parameter:
1144f1d73a7aSMatthew G. Knepley . locX - Solution updated with boundary values
1145f1d73a7aSMatthew G. Knepley 
1146ed808b8fSJed Brown   Level: intermediate
1147f1d73a7aSMatthew G. Knepley 
11481cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMProjectFunctionLabelLocal()`, `DMAddBoundary()`
1149f1d73a7aSMatthew G. Knepley @*/
1150d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexInsertBoundaryValues(DM dm, PetscBool insertEssential, Vec locX, PetscReal time, Vec faceGeomFVM, Vec cellGeomFVM, Vec gradFVM)
1151d71ae5a4SJacob Faibussowitsch {
1152f1d73a7aSMatthew G. Knepley   PetscFunctionBegin;
1153f1d73a7aSMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
1154064a246eSJacob Faibussowitsch   PetscValidHeaderSpecific(locX, VEC_CLASSID, 3);
1155ad540459SPierre Jolivet   if (faceGeomFVM) PetscValidHeaderSpecific(faceGeomFVM, VEC_CLASSID, 5);
1156ad540459SPierre Jolivet   if (cellGeomFVM) PetscValidHeaderSpecific(cellGeomFVM, VEC_CLASSID, 6);
1157ad540459SPierre Jolivet   if (gradFVM) PetscValidHeaderSpecific(gradFVM, VEC_CLASSID, 7);
1158cac4c232SBarry Smith   PetscTryMethod(dm, "DMPlexInsertBoundaryValues_C", (DM, PetscBool, Vec, PetscReal, Vec, Vec, Vec), (dm, insertEssential, locX, time, faceGeomFVM, cellGeomFVM, gradFVM));
11593ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1160f1d73a7aSMatthew G. Knepley }
1161f1d73a7aSMatthew G. Knepley 
116256cf3b9cSMatthew G. Knepley /*@
1163a5b23f4aSJose E. Roman   DMPlexInsertTimeDerivativeBoundaryValues - Puts coefficients which represent boundary values of the time derivative into the local solution vector
116456cf3b9cSMatthew G. Knepley 
116556cf3b9cSMatthew G. Knepley   Input Parameters:
1166a1cb98faSBarry Smith + dm              - The `DM`
116756cf3b9cSMatthew G. Knepley . insertEssential - Should I insert essential (e.g. Dirichlet) or inessential (e.g. Neumann) boundary conditions
116856cf3b9cSMatthew G. Knepley . time            - The time
116956cf3b9cSMatthew G. Knepley . faceGeomFVM     - Face geometry data for FV discretizations
117056cf3b9cSMatthew G. Knepley . cellGeomFVM     - Cell geometry data for FV discretizations
117156cf3b9cSMatthew G. Knepley - gradFVM         - Gradient reconstruction data for FV discretizations
117256cf3b9cSMatthew G. Knepley 
11732fe279fdSBarry Smith   Output Parameter:
117456cf3b9cSMatthew G. Knepley . locX_t - Solution updated with boundary values
117556cf3b9cSMatthew G. Knepley 
117656cf3b9cSMatthew G. Knepley   Level: developer
117756cf3b9cSMatthew G. Knepley 
11781cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMProjectFunctionLabelLocal()`
117956cf3b9cSMatthew G. Knepley @*/
1180d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexInsertTimeDerivativeBoundaryValues(DM dm, PetscBool insertEssential, Vec locX_t, PetscReal time, Vec faceGeomFVM, Vec cellGeomFVM, Vec gradFVM)
1181d71ae5a4SJacob Faibussowitsch {
118256cf3b9cSMatthew G. Knepley   PetscFunctionBegin;
118356cf3b9cSMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
1184ad540459SPierre Jolivet   if (locX_t) PetscValidHeaderSpecific(locX_t, VEC_CLASSID, 3);
1185ad540459SPierre Jolivet   if (faceGeomFVM) PetscValidHeaderSpecific(faceGeomFVM, VEC_CLASSID, 5);
1186ad540459SPierre Jolivet   if (cellGeomFVM) PetscValidHeaderSpecific(cellGeomFVM, VEC_CLASSID, 6);
1187ad540459SPierre Jolivet   if (gradFVM) PetscValidHeaderSpecific(gradFVM, VEC_CLASSID, 7);
1188cac4c232SBarry Smith   PetscTryMethod(dm, "DMPlexInsertTimeDerviativeBoundaryValues_C", (DM, PetscBool, Vec, PetscReal, Vec, Vec, Vec), (dm, insertEssential, locX_t, time, faceGeomFVM, cellGeomFVM, gradFVM));
11893ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
119056cf3b9cSMatthew G. Knepley }
119156cf3b9cSMatthew G. Knepley 
1192d71ae5a4SJacob Faibussowitsch PetscErrorCode DMComputeL2Diff_Plex(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal[], PetscInt, PetscScalar *, void *), void **ctxs, Vec X, PetscReal *diff)
1193d71ae5a4SJacob Faibussowitsch {
1194574a98acSMatthew G. Knepley   Vec localX;
1195574a98acSMatthew G. Knepley 
1196574a98acSMatthew G. Knepley   PetscFunctionBegin;
11979566063dSJacob Faibussowitsch   PetscCall(DMGetLocalVector(dm, &localX));
11989566063dSJacob Faibussowitsch   PetscCall(DMPlexInsertBoundaryValues(dm, PETSC_TRUE, localX, time, NULL, NULL, NULL));
11999566063dSJacob Faibussowitsch   PetscCall(DMGlobalToLocalBegin(dm, X, INSERT_VALUES, localX));
12009566063dSJacob Faibussowitsch   PetscCall(DMGlobalToLocalEnd(dm, X, INSERT_VALUES, localX));
12019566063dSJacob Faibussowitsch   PetscCall(DMPlexComputeL2DiffLocal(dm, time, funcs, ctxs, localX, diff));
12029566063dSJacob Faibussowitsch   PetscCall(DMRestoreLocalVector(dm, &localX));
12033ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1204574a98acSMatthew G. Knepley }
1205574a98acSMatthew G. Knepley 
1206574a98acSMatthew G. Knepley /*@C
120760225df5SJacob Faibussowitsch   DMPlexComputeL2DiffLocal - This function computes the L_2 difference between a function u and an FEM interpolant solution u_h.
1208574a98acSMatthew G. Knepley 
120920f4b53cSBarry Smith   Collective
1210c0f8e1fdSMatthew G. Knepley 
1211574a98acSMatthew G. Knepley   Input Parameters:
1212a1cb98faSBarry Smith + dm     - The `DM`
1213574a98acSMatthew G. Knepley . time   - The time
1214574a98acSMatthew G. Knepley . funcs  - The functions to evaluate for each field component
121520f4b53cSBarry Smith . ctxs   - Optional array of contexts to pass to each function, or `NULL`.
1216574a98acSMatthew G. Knepley - localX - The coefficient vector u_h, a local vector
1217574a98acSMatthew G. Knepley 
1218574a98acSMatthew G. Knepley   Output Parameter:
1219574a98acSMatthew G. Knepley . diff - The diff ||u - u_h||_2
1220574a98acSMatthew G. Knepley 
1221574a98acSMatthew G. Knepley   Level: developer
1222574a98acSMatthew G. Knepley 
12231cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMProjectFunction()`, `DMComputeL2FieldDiff()`, `DMComputeL2GradientDiff()`
1224574a98acSMatthew G. Knepley @*/
1225d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeL2DiffLocal(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal[], PetscInt, PetscScalar *, void *), void **ctxs, Vec localX, PetscReal *diff)
1226d71ae5a4SJacob Faibussowitsch {
12270f09c10fSMatthew G. Knepley   const PetscInt   debug = ((DM_Plex *)dm->data)->printL2;
1228ca3d3a14SMatthew G. Knepley   DM               tdm;
1229ca3d3a14SMatthew G. Knepley   Vec              tv;
1230cb1e1211SMatthew G Knepley   PetscSection     section;
1231c5bbbd5bSMatthew G. Knepley   PetscQuadrature  quad;
12324bee2e38SMatthew G. Knepley   PetscFEGeom      fegeom;
123315496722SMatthew G. Knepley   PetscScalar     *funcVal, *interpolant;
12344bee2e38SMatthew G. Knepley   PetscReal       *coords, *gcoords;
1235cb1e1211SMatthew G Knepley   PetscReal        localDiff = 0.0;
12367318780aSToby Isaac   const PetscReal *quadWeights;
1237412e9a14SMatthew G. Knepley   PetscInt         dim, coordDim, numFields, numComponents = 0, qNc, Nq, cellHeight, cStart, cEnd, c, field, fieldOffset;
1238ca3d3a14SMatthew G. Knepley   PetscBool        transform;
1239cb1e1211SMatthew G Knepley 
1240cb1e1211SMatthew G Knepley   PetscFunctionBegin;
12419566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dm, &dim));
12429566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateDim(dm, &coordDim));
12432a4e142eSMatthew G. Knepley   fegeom.dimEmbed = coordDim;
12449566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dm, &section));
12459566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetNumFields(section, &numFields));
12469566063dSJacob Faibussowitsch   PetscCall(DMGetBasisTransformDM_Internal(dm, &tdm));
12479566063dSJacob Faibussowitsch   PetscCall(DMGetBasisTransformVec_Internal(dm, &tv));
12489566063dSJacob Faibussowitsch   PetscCall(DMHasBasisTransform(dm, &transform));
1249eae3dc7dSJacob Faibussowitsch   PetscCheck(numFields, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of fields is zero!");
1250cb1e1211SMatthew G Knepley   for (field = 0; field < numFields; ++field) {
125115496722SMatthew G. Knepley     PetscObject  obj;
125215496722SMatthew G. Knepley     PetscClassId id;
1253c5bbbd5bSMatthew G. Knepley     PetscInt     Nc;
1254c5bbbd5bSMatthew G. Knepley 
12559566063dSJacob Faibussowitsch     PetscCall(DMGetField(dm, field, NULL, &obj));
12569566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetClassId(obj, &id));
125715496722SMatthew G. Knepley     if (id == PETSCFE_CLASSID) {
125815496722SMatthew G. Knepley       PetscFE fe = (PetscFE)obj;
125915496722SMatthew G. Knepley 
12609566063dSJacob Faibussowitsch       PetscCall(PetscFEGetQuadrature(fe, &quad));
12619566063dSJacob Faibussowitsch       PetscCall(PetscFEGetNumComponents(fe, &Nc));
126215496722SMatthew G. Knepley     } else if (id == PETSCFV_CLASSID) {
126315496722SMatthew G. Knepley       PetscFV fv = (PetscFV)obj;
126415496722SMatthew G. Knepley 
12659566063dSJacob Faibussowitsch       PetscCall(PetscFVGetQuadrature(fv, &quad));
12669566063dSJacob Faibussowitsch       PetscCall(PetscFVGetNumComponents(fv, &Nc));
126763a3b9bcSJacob Faibussowitsch     } else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, field);
1268c5bbbd5bSMatthew G. Knepley     numComponents += Nc;
1269cb1e1211SMatthew G Knepley   }
12709566063dSJacob Faibussowitsch   PetscCall(PetscQuadratureGetData(quad, NULL, &qNc, &Nq, NULL, &quadWeights));
127163a3b9bcSJacob Faibussowitsch   PetscCheck(!(qNc != 1) || !(qNc != numComponents), PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_SIZ, "Quadrature components %" PetscInt_FMT " != %" PetscInt_FMT " field components", qNc, numComponents);
1272c9cb6370SYANG Zongze   PetscCall(PetscMalloc6(numComponents, &funcVal, numComponents, &interpolant, coordDim * (Nq + 1), &coords, Nq, &fegeom.detJ, coordDim * coordDim * Nq, &fegeom.J, coordDim * coordDim * Nq, &fegeom.invJ));
12739566063dSJacob Faibussowitsch   PetscCall(DMPlexGetVTKCellHeight(dm, &cellHeight));
12749566063dSJacob Faibussowitsch   PetscCall(DMPlexGetSimplexOrBoxCells(dm, cellHeight, &cStart, &cEnd));
1275cb1e1211SMatthew G Knepley   for (c = cStart; c < cEnd; ++c) {
1276a1e44745SMatthew G. Knepley     PetscScalar *x        = NULL;
1277cb1e1211SMatthew G Knepley     PetscReal    elemDiff = 0.0;
12789c3cf19fSMatthew G. Knepley     PetscInt     qc       = 0;
1279cb1e1211SMatthew G Knepley 
12809566063dSJacob Faibussowitsch     PetscCall(DMPlexComputeCellGeometryFEM(dm, c, quad, coords, fegeom.J, fegeom.invJ, fegeom.detJ));
12819566063dSJacob Faibussowitsch     PetscCall(DMPlexVecGetClosure(dm, NULL, localX, c, NULL, &x));
1282cb1e1211SMatthew G Knepley 
128315496722SMatthew G. Knepley     for (field = 0, fieldOffset = 0; field < numFields; ++field) {
128415496722SMatthew G. Knepley       PetscObject  obj;
128515496722SMatthew G. Knepley       PetscClassId id;
1286c110b1eeSGeoffrey Irving       void *const  ctx = ctxs ? ctxs[field] : NULL;
128715496722SMatthew G. Knepley       PetscInt     Nb, Nc, q, fc;
1288cb1e1211SMatthew G Knepley 
12899566063dSJacob Faibussowitsch       PetscCall(DMGetField(dm, field, NULL, &obj));
12909566063dSJacob Faibussowitsch       PetscCall(PetscObjectGetClassId(obj, &id));
12919371c9d4SSatish Balay       if (id == PETSCFE_CLASSID) {
12929371c9d4SSatish Balay         PetscCall(PetscFEGetNumComponents((PetscFE)obj, &Nc));
12939371c9d4SSatish Balay         PetscCall(PetscFEGetDimension((PetscFE)obj, &Nb));
12949371c9d4SSatish Balay       } else if (id == PETSCFV_CLASSID) {
12959371c9d4SSatish Balay         PetscCall(PetscFVGetNumComponents((PetscFV)obj, &Nc));
12969371c9d4SSatish Balay         Nb = 1;
12979371c9d4SSatish Balay       } else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, field);
1298cb1e1211SMatthew G Knepley       if (debug) {
1299cb1e1211SMatthew G Knepley         char title[1024];
130063a3b9bcSJacob Faibussowitsch         PetscCall(PetscSNPrintf(title, 1023, "Solution for Field %" PetscInt_FMT, field));
13019566063dSJacob Faibussowitsch         PetscCall(DMPrintCellVector(c, title, Nb, &x[fieldOffset]));
1302cb1e1211SMatthew G Knepley       }
13037318780aSToby Isaac       for (q = 0; q < Nq; ++q) {
13042a4e142eSMatthew G. Knepley         PetscFEGeom    qgeom;
1305d0609cedSBarry Smith         PetscErrorCode ierr;
13062a4e142eSMatthew G. Knepley 
13072a4e142eSMatthew G. Knepley         qgeom.dimEmbed = fegeom.dimEmbed;
13082a4e142eSMatthew G. Knepley         qgeom.J        = &fegeom.J[q * coordDim * coordDim];
13092a4e142eSMatthew G. Knepley         qgeom.invJ     = &fegeom.invJ[q * coordDim * coordDim];
13102a4e142eSMatthew G. Knepley         qgeom.detJ     = &fegeom.detJ[q];
131163a3b9bcSJacob Faibussowitsch         PetscCheck(fegeom.detJ[q] > 0.0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Invalid determinant %g for element %" PetscInt_FMT ", point %" PetscInt_FMT, (double)fegeom.detJ[q], c, q);
1312d3a7d86cSMatthew G. Knepley         if (transform) {
1313d3a7d86cSMatthew G. Knepley           gcoords = &coords[coordDim * Nq];
13149566063dSJacob Faibussowitsch           PetscCall(DMPlexBasisTransformApplyReal_Internal(dm, &coords[coordDim * q], PETSC_TRUE, coordDim, &coords[coordDim * q], gcoords, dm->transformCtx));
1315d3a7d86cSMatthew G. Knepley         } else {
1316d3a7d86cSMatthew G. Knepley           gcoords = &coords[coordDim * q];
1317d3a7d86cSMatthew G. Knepley         }
13189566063dSJacob Faibussowitsch         PetscCall(PetscArrayzero(funcVal, Nc));
1319ca3d3a14SMatthew G. Knepley         ierr = (*funcs[field])(coordDim, time, gcoords, Nc, funcVal, ctx);
1320e735a8a9SMatthew G. Knepley         if (ierr) {
13219566063dSJacob Faibussowitsch           PetscCall(DMPlexVecRestoreClosure(dm, NULL, localX, c, NULL, &x));
13229566063dSJacob Faibussowitsch           PetscCall(DMRestoreLocalVector(dm, &localX));
13239566063dSJacob Faibussowitsch           PetscCall(PetscFree6(funcVal, interpolant, coords, fegeom.detJ, fegeom.J, fegeom.invJ));
1324e735a8a9SMatthew G. Knepley         }
13259566063dSJacob Faibussowitsch         if (transform) PetscCall(DMPlexBasisTransformApply_Internal(dm, &coords[coordDim * q], PETSC_FALSE, Nc, funcVal, funcVal, dm->transformCtx));
13269566063dSJacob Faibussowitsch         if (id == PETSCFE_CLASSID) PetscCall(PetscFEInterpolate_Static((PetscFE)obj, &x[fieldOffset], &qgeom, q, interpolant));
13279566063dSJacob Faibussowitsch         else if (id == PETSCFV_CLASSID) PetscCall(PetscFVInterpolate_Static((PetscFV)obj, &x[fieldOffset], q, interpolant));
13282df84da0SMatthew G. Knepley         else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, field);
132915496722SMatthew G. Knepley         for (fc = 0; fc < Nc; ++fc) {
1330beaa55a6SMatthew G. Knepley           const PetscReal wt = quadWeights[q * qNc + (qNc == 1 ? 0 : qc + fc)];
13319371c9d4SSatish Balay           if (debug)
13329371c9d4SSatish Balay             PetscCall(PetscPrintf(PETSC_COMM_SELF, "    elem %" PetscInt_FMT " field %" PetscInt_FMT ",%" PetscInt_FMT " point %g %g %g diff %g (%g, %g)\n", c, field, fc, (double)(coordDim > 0 ? coords[coordDim * q] : 0.), (double)(coordDim > 1 ? coords[coordDim * q + 1] : 0.), (double)(coordDim > 2 ? coords[coordDim * q + 2] : 0.),
13339371c9d4SSatish Balay                                   (double)(PetscSqr(PetscRealPart(interpolant[fc] - funcVal[fc])) * wt * fegeom.detJ[q]), (double)PetscRealPart(interpolant[fc]), (double)PetscRealPart(funcVal[fc])));
13344bee2e38SMatthew G. Knepley           elemDiff += PetscSqr(PetscRealPart(interpolant[fc] - funcVal[fc])) * wt * fegeom.detJ[q];
1335cb1e1211SMatthew G Knepley         }
1336cb1e1211SMatthew G Knepley       }
13379c3cf19fSMatthew G. Knepley       fieldOffset += Nb;
1338beaa55a6SMatthew G. Knepley       qc += Nc;
1339cb1e1211SMatthew G Knepley     }
13409566063dSJacob Faibussowitsch     PetscCall(DMPlexVecRestoreClosure(dm, NULL, localX, c, NULL, &x));
13419566063dSJacob Faibussowitsch     if (debug) PetscCall(PetscPrintf(PETSC_COMM_SELF, "  elem %" PetscInt_FMT " diff %g\n", c, (double)elemDiff));
1342cb1e1211SMatthew G Knepley     localDiff += elemDiff;
1343cb1e1211SMatthew G Knepley   }
13449566063dSJacob Faibussowitsch   PetscCall(PetscFree6(funcVal, interpolant, coords, fegeom.detJ, fegeom.J, fegeom.invJ));
13451c2dc1cbSBarry Smith   PetscCall(MPIU_Allreduce(&localDiff, diff, 1, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)dm)));
1346cb1e1211SMatthew G Knepley   *diff = PetscSqrtReal(*diff);
13473ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1348cb1e1211SMatthew G Knepley }
1349cb1e1211SMatthew G Knepley 
1350d71ae5a4SJacob Faibussowitsch PetscErrorCode DMComputeL2GradientDiff_Plex(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal[], const PetscReal[], PetscInt, PetscScalar *, void *), void **ctxs, Vec X, const PetscReal n[], PetscReal *diff)
1351d71ae5a4SJacob Faibussowitsch {
13520f09c10fSMatthew G. Knepley   const PetscInt   debug = ((DM_Plex *)dm->data)->printL2;
1353ca3d3a14SMatthew G. Knepley   DM               tdm;
1354cb1e1211SMatthew G Knepley   PetscSection     section;
135540e14135SMatthew G. Knepley   PetscQuadrature  quad;
1356ca3d3a14SMatthew G. Knepley   Vec              localX, tv;
13579c3cf19fSMatthew G. Knepley   PetscScalar     *funcVal, *interpolant;
13582a4e142eSMatthew G. Knepley   const PetscReal *quadWeights;
13594bee2e38SMatthew G. Knepley   PetscFEGeom      fegeom;
13604bee2e38SMatthew G. Knepley   PetscReal       *coords, *gcoords;
136140e14135SMatthew G. Knepley   PetscReal        localDiff = 0.0;
1362485ad865SMatthew G. Knepley   PetscInt         dim, coordDim, qNc = 0, Nq = 0, numFields, numComponents = 0, cStart, cEnd, c, field, fieldOffset;
1363ca3d3a14SMatthew G. Knepley   PetscBool        transform;
1364cb1e1211SMatthew G Knepley 
1365cb1e1211SMatthew G Knepley   PetscFunctionBegin;
13669566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dm, &dim));
13679566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateDim(dm, &coordDim));
13684bee2e38SMatthew G. Knepley   fegeom.dimEmbed = coordDim;
13699566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dm, &section));
13709566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetNumFields(section, &numFields));
13719566063dSJacob Faibussowitsch   PetscCall(DMGetLocalVector(dm, &localX));
13729566063dSJacob Faibussowitsch   PetscCall(DMGlobalToLocalBegin(dm, X, INSERT_VALUES, localX));
13739566063dSJacob Faibussowitsch   PetscCall(DMGlobalToLocalEnd(dm, X, INSERT_VALUES, localX));
13749566063dSJacob Faibussowitsch   PetscCall(DMGetBasisTransformDM_Internal(dm, &tdm));
13759566063dSJacob Faibussowitsch   PetscCall(DMGetBasisTransformVec_Internal(dm, &tv));
13769566063dSJacob Faibussowitsch   PetscCall(DMHasBasisTransform(dm, &transform));
1377652b88e8SMatthew G. Knepley   for (field = 0; field < numFields; ++field) {
13780f2d7e86SMatthew G. Knepley     PetscFE  fe;
137940e14135SMatthew G. Knepley     PetscInt Nc;
1380652b88e8SMatthew G. Knepley 
13819566063dSJacob Faibussowitsch     PetscCall(DMGetField(dm, field, NULL, (PetscObject *)&fe));
13829566063dSJacob Faibussowitsch     PetscCall(PetscFEGetQuadrature(fe, &quad));
13839566063dSJacob Faibussowitsch     PetscCall(PetscFEGetNumComponents(fe, &Nc));
138440e14135SMatthew G. Knepley     numComponents += Nc;
1385652b88e8SMatthew G. Knepley   }
13869566063dSJacob Faibussowitsch   PetscCall(PetscQuadratureGetData(quad, NULL, &qNc, &Nq, NULL, &quadWeights));
138763a3b9bcSJacob Faibussowitsch   PetscCheck(!(qNc != 1) || !(qNc != numComponents), PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_SIZ, "Quadrature components %" PetscInt_FMT " != %" PetscInt_FMT " field components", qNc, numComponents);
13889566063dSJacob Faibussowitsch   /* PetscCall(DMProjectFunctionLocal(dm, fe, funcs, INSERT_BC_VALUES, localX)); */
1389c9cb6370SYANG Zongze   PetscCall(PetscMalloc6(numComponents, &funcVal, coordDim * (Nq + 1), &coords, coordDim * coordDim * Nq, &fegeom.J, coordDim * coordDim * Nq, &fegeom.invJ, numComponents * coordDim, &interpolant, Nq, &fegeom.detJ));
13909566063dSJacob Faibussowitsch   PetscCall(DMPlexGetSimplexOrBoxCells(dm, 0, &cStart, &cEnd));
139140e14135SMatthew G. Knepley   for (c = cStart; c < cEnd; ++c) {
139240e14135SMatthew G. Knepley     PetscScalar *x        = NULL;
139340e14135SMatthew G. Knepley     PetscReal    elemDiff = 0.0;
13949c3cf19fSMatthew G. Knepley     PetscInt     qc       = 0;
1395652b88e8SMatthew G. Knepley 
13969566063dSJacob Faibussowitsch     PetscCall(DMPlexComputeCellGeometryFEM(dm, c, quad, coords, fegeom.J, fegeom.invJ, fegeom.detJ));
13979566063dSJacob Faibussowitsch     PetscCall(DMPlexVecGetClosure(dm, NULL, localX, c, NULL, &x));
139840e14135SMatthew G. Knepley 
13999c3cf19fSMatthew G. Knepley     for (field = 0, fieldOffset = 0; field < numFields; ++field) {
14000f2d7e86SMatthew G. Knepley       PetscFE     fe;
140151259fa3SMatthew G. Knepley       void *const ctx = ctxs ? ctxs[field] : NULL;
14029c3cf19fSMatthew G. Knepley       PetscInt    Nb, Nc, q, fc;
140340e14135SMatthew G. Knepley 
14049566063dSJacob Faibussowitsch       PetscCall(DMGetField(dm, field, NULL, (PetscObject *)&fe));
14059566063dSJacob Faibussowitsch       PetscCall(PetscFEGetDimension(fe, &Nb));
14069566063dSJacob Faibussowitsch       PetscCall(PetscFEGetNumComponents(fe, &Nc));
140740e14135SMatthew G. Knepley       if (debug) {
140840e14135SMatthew G. Knepley         char title[1024];
14099566063dSJacob Faibussowitsch         PetscCall(PetscSNPrintf(title, 1023, "Solution for Field %" PetscInt_FMT, field));
14109566063dSJacob Faibussowitsch         PetscCall(DMPrintCellVector(c, title, Nb, &x[fieldOffset]));
1411652b88e8SMatthew G. Knepley       }
14129c3cf19fSMatthew G. Knepley       for (q = 0; q < Nq; ++q) {
14132a4e142eSMatthew G. Knepley         PetscFEGeom    qgeom;
1414d0609cedSBarry Smith         PetscErrorCode ierr;
14152a4e142eSMatthew G. Knepley 
14162a4e142eSMatthew G. Knepley         qgeom.dimEmbed = fegeom.dimEmbed;
14172a4e142eSMatthew G. Knepley         qgeom.J        = &fegeom.J[q * coordDim * coordDim];
14182a4e142eSMatthew G. Knepley         qgeom.invJ     = &fegeom.invJ[q * coordDim * coordDim];
14192a4e142eSMatthew G. Knepley         qgeom.detJ     = &fegeom.detJ[q];
14202df84da0SMatthew G. Knepley         PetscCheck(fegeom.detJ[q] > 0.0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Invalid determinant %g for element %" PetscInt_FMT ", quadrature points %" PetscInt_FMT, (double)fegeom.detJ[q], c, q);
1421d3a7d86cSMatthew G. Knepley         if (transform) {
1422d3a7d86cSMatthew G. Knepley           gcoords = &coords[coordDim * Nq];
14239566063dSJacob Faibussowitsch           PetscCall(DMPlexBasisTransformApplyReal_Internal(dm, &coords[coordDim * q], PETSC_TRUE, coordDim, &coords[coordDim * q], gcoords, dm->transformCtx));
1424d3a7d86cSMatthew G. Knepley         } else {
1425d3a7d86cSMatthew G. Knepley           gcoords = &coords[coordDim * q];
1426d3a7d86cSMatthew G. Knepley         }
14279566063dSJacob Faibussowitsch         PetscCall(PetscArrayzero(funcVal, Nc));
14284bee2e38SMatthew G. Knepley         ierr = (*funcs[field])(coordDim, time, gcoords, n, Nc, funcVal, ctx);
1429e735a8a9SMatthew G. Knepley         if (ierr) {
14309566063dSJacob Faibussowitsch           PetscCall(DMPlexVecRestoreClosure(dm, NULL, localX, c, NULL, &x));
14319566063dSJacob Faibussowitsch           PetscCall(DMRestoreLocalVector(dm, &localX));
14329566063dSJacob Faibussowitsch           PetscCall(PetscFree6(funcVal, coords, fegeom.J, fegeom.invJ, interpolant, fegeom.detJ));
1433e735a8a9SMatthew G. Knepley         }
14349566063dSJacob Faibussowitsch         if (transform) PetscCall(DMPlexBasisTransformApply_Internal(dm, &coords[coordDim * q], PETSC_FALSE, Nc, funcVal, funcVal, dm->transformCtx));
14359566063dSJacob Faibussowitsch         PetscCall(PetscFEInterpolateGradient_Static(fe, 1, &x[fieldOffset], &qgeom, q, interpolant));
14364bee2e38SMatthew G. Knepley         /* Overwrite with the dot product if the normal is given */
14374bee2e38SMatthew G. Knepley         if (n) {
14384bee2e38SMatthew G. Knepley           for (fc = 0; fc < Nc; ++fc) {
14394bee2e38SMatthew G. Knepley             PetscScalar sum = 0.0;
14404bee2e38SMatthew G. Knepley             PetscInt    d;
14414bee2e38SMatthew G. Knepley             for (d = 0; d < dim; ++d) sum += interpolant[fc * dim + d] * n[d];
14424bee2e38SMatthew G. Knepley             interpolant[fc] = sum;
14434bee2e38SMatthew G. Knepley           }
14444bee2e38SMatthew G. Knepley         }
14459c3cf19fSMatthew G. Knepley         for (fc = 0; fc < Nc; ++fc) {
1446beaa55a6SMatthew G. Knepley           const PetscReal wt = quadWeights[q * qNc + (qNc == 1 ? 0 : qc + fc)];
144763a3b9bcSJacob Faibussowitsch           if (debug) PetscCall(PetscPrintf(PETSC_COMM_SELF, "    elem %" PetscInt_FMT " fieldDer %" PetscInt_FMT ",%" PetscInt_FMT " diff %g\n", c, field, fc, (double)(PetscSqr(PetscRealPart(interpolant[fc] - funcVal[fc])) * wt * fegeom.detJ[q])));
14484bee2e38SMatthew G. Knepley           elemDiff += PetscSqr(PetscRealPart(interpolant[fc] - funcVal[fc])) * wt * fegeom.detJ[q];
144940e14135SMatthew G. Knepley         }
145040e14135SMatthew G. Knepley       }
14519c3cf19fSMatthew G. Knepley       fieldOffset += Nb;
14529c3cf19fSMatthew G. Knepley       qc += Nc;
145340e14135SMatthew G. Knepley     }
14549566063dSJacob Faibussowitsch     PetscCall(DMPlexVecRestoreClosure(dm, NULL, localX, c, NULL, &x));
145563a3b9bcSJacob Faibussowitsch     if (debug) PetscCall(PetscPrintf(PETSC_COMM_SELF, "  elem %" PetscInt_FMT " diff %g\n", c, (double)elemDiff));
145640e14135SMatthew G. Knepley     localDiff += elemDiff;
145740e14135SMatthew G. Knepley   }
14589566063dSJacob Faibussowitsch   PetscCall(PetscFree6(funcVal, coords, fegeom.J, fegeom.invJ, interpolant, fegeom.detJ));
14599566063dSJacob Faibussowitsch   PetscCall(DMRestoreLocalVector(dm, &localX));
14601c2dc1cbSBarry Smith   PetscCall(MPIU_Allreduce(&localDiff, diff, 1, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)dm)));
146140e14135SMatthew G. Knepley   *diff = PetscSqrtReal(*diff);
14623ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1463cb1e1211SMatthew G Knepley }
1464cb1e1211SMatthew G Knepley 
1465d71ae5a4SJacob Faibussowitsch PetscErrorCode DMComputeL2FieldDiff_Plex(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal[], PetscInt, PetscScalar *, void *), void **ctxs, Vec X, PetscReal *diff)
1466d71ae5a4SJacob Faibussowitsch {
14670f09c10fSMatthew G. Knepley   const PetscInt debug = ((DM_Plex *)dm->data)->printL2;
1468ca3d3a14SMatthew G. Knepley   DM             tdm;
1469083401c6SMatthew G. Knepley   DMLabel        depthLabel;
147073d901b8SMatthew G. Knepley   PetscSection   section;
1471ca3d3a14SMatthew G. Knepley   Vec            localX, tv;
147273d901b8SMatthew G. Knepley   PetscReal     *localDiff;
1473083401c6SMatthew G. Knepley   PetscInt       dim, depth, dE, Nf, f, Nds, s;
1474ca3d3a14SMatthew G. Knepley   PetscBool      transform;
147573d901b8SMatthew G. Knepley 
147673d901b8SMatthew G. Knepley   PetscFunctionBegin;
14779566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dm, &dim));
14789566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateDim(dm, &dE));
14799566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dm, &section));
14809566063dSJacob Faibussowitsch   PetscCall(DMGetLocalVector(dm, &localX));
14819566063dSJacob Faibussowitsch   PetscCall(DMGetBasisTransformDM_Internal(dm, &tdm));
14829566063dSJacob Faibussowitsch   PetscCall(DMGetBasisTransformVec_Internal(dm, &tv));
14839566063dSJacob Faibussowitsch   PetscCall(DMHasBasisTransform(dm, &transform));
14849566063dSJacob Faibussowitsch   PetscCall(DMGetNumFields(dm, &Nf));
14859566063dSJacob Faibussowitsch   PetscCall(DMPlexGetDepthLabel(dm, &depthLabel));
14869566063dSJacob Faibussowitsch   PetscCall(DMLabelGetNumValues(depthLabel, &depth));
1487083401c6SMatthew G. Knepley 
14889566063dSJacob Faibussowitsch   PetscCall(VecSet(localX, 0.0));
14899566063dSJacob Faibussowitsch   PetscCall(DMGlobalToLocalBegin(dm, X, INSERT_VALUES, localX));
14909566063dSJacob Faibussowitsch   PetscCall(DMGlobalToLocalEnd(dm, X, INSERT_VALUES, localX));
14919566063dSJacob Faibussowitsch   PetscCall(DMProjectFunctionLocal(dm, time, funcs, ctxs, INSERT_BC_VALUES, localX));
14929566063dSJacob Faibussowitsch   PetscCall(DMGetNumDS(dm, &Nds));
14939566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(Nf, &localDiff));
1494083401c6SMatthew G. Knepley   for (s = 0; s < Nds; ++s) {
1495083401c6SMatthew G. Knepley     PetscDS          ds;
1496083401c6SMatthew G. Knepley     DMLabel          label;
1497083401c6SMatthew G. Knepley     IS               fieldIS, pointIS;
1498083401c6SMatthew G. Knepley     const PetscInt  *fields, *points = NULL;
1499083401c6SMatthew G. Knepley     PetscQuadrature  quad;
1500083401c6SMatthew G. Knepley     const PetscReal *quadPoints, *quadWeights;
1501083401c6SMatthew G. Knepley     PetscFEGeom      fegeom;
1502083401c6SMatthew G. Knepley     PetscReal       *coords, *gcoords;
1503083401c6SMatthew G. Knepley     PetscScalar     *funcVal, *interpolant;
15045fedec97SMatthew G. Knepley     PetscBool        isCohesive;
1505083401c6SMatthew G. Knepley     PetscInt         qNc, Nq, totNc, cStart = 0, cEnd, c, dsNf;
150673d901b8SMatthew G. Knepley 
150707218a29SMatthew G. Knepley     PetscCall(DMGetRegionNumDS(dm, s, &label, &fieldIS, &ds, NULL));
15089566063dSJacob Faibussowitsch     PetscCall(ISGetIndices(fieldIS, &fields));
15099566063dSJacob Faibussowitsch     PetscCall(PetscDSIsCohesive(ds, &isCohesive));
15109566063dSJacob Faibussowitsch     PetscCall(PetscDSGetNumFields(ds, &dsNf));
15119566063dSJacob Faibussowitsch     PetscCall(PetscDSGetTotalComponents(ds, &totNc));
15129566063dSJacob Faibussowitsch     PetscCall(PetscDSGetQuadrature(ds, &quad));
15139566063dSJacob Faibussowitsch     PetscCall(PetscQuadratureGetData(quad, NULL, &qNc, &Nq, &quadPoints, &quadWeights));
151463a3b9bcSJacob Faibussowitsch     PetscCheck(!(qNc != 1) || !(qNc != totNc), PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Quadrature components %" PetscInt_FMT " != %" PetscInt_FMT " field components", qNc, totNc);
15159566063dSJacob Faibussowitsch     PetscCall(PetscCalloc6(totNc, &funcVal, totNc, &interpolant, dE * (Nq + 1), &coords, Nq, &fegeom.detJ, dE * dE * Nq, &fegeom.J, dE * dE * Nq, &fegeom.invJ));
1516083401c6SMatthew G. Knepley     if (!label) {
15179566063dSJacob Faibussowitsch       PetscCall(DMPlexGetSimplexOrBoxCells(dm, 0, &cStart, &cEnd));
1518083401c6SMatthew G. Knepley     } else {
15199566063dSJacob Faibussowitsch       PetscCall(DMLabelGetStratumIS(label, 1, &pointIS));
15209566063dSJacob Faibussowitsch       PetscCall(ISGetLocalSize(pointIS, &cEnd));
15219566063dSJacob Faibussowitsch       PetscCall(ISGetIndices(pointIS, &points));
1522083401c6SMatthew G. Knepley     }
152373d901b8SMatthew G. Knepley     for (c = cStart; c < cEnd; ++c) {
1524083401c6SMatthew G. Knepley       const PetscInt  cell = points ? points[c] : c;
152573d901b8SMatthew G. Knepley       PetscScalar    *x    = NULL;
15265fedec97SMatthew G. Knepley       const PetscInt *cone;
15275fedec97SMatthew G. Knepley       PetscInt        qc = 0, fOff = 0, dep;
152873d901b8SMatthew G. Knepley 
15299566063dSJacob Faibussowitsch       PetscCall(DMLabelGetValue(depthLabel, cell, &dep));
1530083401c6SMatthew G. Knepley       if (dep != depth - 1) continue;
15315fedec97SMatthew G. Knepley       if (isCohesive) {
15329566063dSJacob Faibussowitsch         PetscCall(DMPlexGetCone(dm, cell, &cone));
15339566063dSJacob Faibussowitsch         PetscCall(DMPlexComputeCellGeometryFEM(dm, cone[0], quad, coords, fegeom.J, fegeom.invJ, fegeom.detJ));
153496959cd1SMatthew G. Knepley       } else {
15359566063dSJacob Faibussowitsch         PetscCall(DMPlexComputeCellGeometryFEM(dm, cell, quad, coords, fegeom.J, fegeom.invJ, fegeom.detJ));
153696959cd1SMatthew G. Knepley       }
15379566063dSJacob Faibussowitsch       PetscCall(DMPlexVecGetClosure(dm, NULL, localX, cell, NULL, &x));
15385fedec97SMatthew G. Knepley       for (f = 0; f < dsNf; ++f) {
153915496722SMatthew G. Knepley         PetscObject  obj;
154015496722SMatthew G. Knepley         PetscClassId id;
1541083401c6SMatthew G. Knepley         void *const  ctx = ctxs ? ctxs[fields[f]] : NULL;
154215496722SMatthew G. Knepley         PetscInt     Nb, Nc, q, fc;
154315496722SMatthew G. Knepley         PetscReal    elemDiff = 0.0;
15445fedec97SMatthew G. Knepley         PetscBool    cohesive;
154515496722SMatthew G. Knepley 
15469566063dSJacob Faibussowitsch         PetscCall(PetscDSGetCohesive(ds, f, &cohesive));
15479566063dSJacob Faibussowitsch         PetscCall(PetscDSGetDiscretization(ds, f, &obj));
15489566063dSJacob Faibussowitsch         PetscCall(PetscObjectGetClassId(obj, &id));
15499371c9d4SSatish Balay         if (id == PETSCFE_CLASSID) {
15509371c9d4SSatish Balay           PetscCall(PetscFEGetNumComponents((PetscFE)obj, &Nc));
15519371c9d4SSatish Balay           PetscCall(PetscFEGetDimension((PetscFE)obj, &Nb));
15529371c9d4SSatish Balay         } else if (id == PETSCFV_CLASSID) {
15539371c9d4SSatish Balay           PetscCall(PetscFVGetNumComponents((PetscFV)obj, &Nc));
15549371c9d4SSatish Balay           Nb = 1;
15559371c9d4SSatish Balay         } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, fields[f]);
1556c82db6dbSMatthew G. Knepley         if (isCohesive && !cohesive) {
1557c82db6dbSMatthew G. Knepley           fOff += Nb * 2;
1558c82db6dbSMatthew G. Knepley           qc += Nc;
1559c82db6dbSMatthew G. Knepley           continue;
1560c82db6dbSMatthew G. Knepley         }
156173d901b8SMatthew G. Knepley         if (debug) {
156273d901b8SMatthew G. Knepley           char title[1024];
156363a3b9bcSJacob Faibussowitsch           PetscCall(PetscSNPrintf(title, 1023, "Solution for Field %" PetscInt_FMT, fields[f]));
15649566063dSJacob Faibussowitsch           PetscCall(DMPrintCellVector(cell, title, Nb, &x[fOff]));
156573d901b8SMatthew G. Knepley         }
15667318780aSToby Isaac         for (q = 0; q < Nq; ++q) {
15672a4e142eSMatthew G. Knepley           PetscFEGeom    qgeom;
1568d0609cedSBarry Smith           PetscErrorCode ierr;
15692a4e142eSMatthew G. Knepley 
15702a4e142eSMatthew G. Knepley           qgeom.dimEmbed = fegeom.dimEmbed;
1571083401c6SMatthew G. Knepley           qgeom.J        = &fegeom.J[q * dE * dE];
1572083401c6SMatthew G. Knepley           qgeom.invJ     = &fegeom.invJ[q * dE * dE];
15732a4e142eSMatthew G. Knepley           qgeom.detJ     = &fegeom.detJ[q];
157463a3b9bcSJacob Faibussowitsch           PetscCheck(fegeom.detJ[q] > 0.0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Invalid determinant %g for cell %" PetscInt_FMT ", quadrature point %" PetscInt_FMT, (double)fegeom.detJ[q], cell, q);
1575d3a7d86cSMatthew G. Knepley           if (transform) {
1576083401c6SMatthew G. Knepley             gcoords = &coords[dE * Nq];
15779566063dSJacob Faibussowitsch             PetscCall(DMPlexBasisTransformApplyReal_Internal(dm, &coords[dE * q], PETSC_TRUE, dE, &coords[dE * q], gcoords, dm->transformCtx));
1578d3a7d86cSMatthew G. Knepley           } else {
1579083401c6SMatthew G. Knepley             gcoords = &coords[dE * q];
1580d3a7d86cSMatthew G. Knepley           }
15812df84da0SMatthew G. Knepley           for (fc = 0; fc < Nc; ++fc) funcVal[fc] = 0.;
1582083401c6SMatthew G. Knepley           ierr = (*funcs[fields[f]])(dE, time, gcoords, Nc, funcVal, ctx);
1583e735a8a9SMatthew G. Knepley           if (ierr) {
15849566063dSJacob Faibussowitsch             PetscCall(DMPlexVecRestoreClosure(dm, NULL, localX, cell, NULL, &x));
15859566063dSJacob Faibussowitsch             PetscCall(DMRestoreLocalVector(dm, &localX));
15869566063dSJacob Faibussowitsch             PetscCall(PetscFree6(funcVal, interpolant, coords, fegeom.detJ, fegeom.J, fegeom.invJ));
1587e735a8a9SMatthew G. Knepley           }
15889566063dSJacob Faibussowitsch           if (transform) PetscCall(DMPlexBasisTransformApply_Internal(dm, &coords[dE * q], PETSC_FALSE, Nc, funcVal, funcVal, dm->transformCtx));
158996959cd1SMatthew G. Knepley           /* Call once for each face, except for lagrange field */
15909566063dSJacob Faibussowitsch           if (id == PETSCFE_CLASSID) PetscCall(PetscFEInterpolate_Static((PetscFE)obj, &x[fOff], &qgeom, q, interpolant));
15919566063dSJacob Faibussowitsch           else if (id == PETSCFV_CLASSID) PetscCall(PetscFVInterpolate_Static((PetscFV)obj, &x[fOff], q, interpolant));
159263a3b9bcSJacob Faibussowitsch           else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, fields[f]);
159315496722SMatthew G. Knepley           for (fc = 0; fc < Nc; ++fc) {
1594beaa55a6SMatthew G. Knepley             const PetscReal wt = quadWeights[q * qNc + (qNc == 1 ? 0 : qc + fc)];
15959371c9d4SSatish Balay             if (debug)
15969371c9d4SSatish Balay               PetscCall(PetscPrintf(PETSC_COMM_SELF, "    cell %" PetscInt_FMT " field %" PetscInt_FMT ",%" PetscInt_FMT " point %g %g %g diff %g\n", cell, fields[f], fc, (double)(dE > 0 ? coords[dE * q] : 0.), (double)(dE > 1 ? coords[dE * q + 1] : 0.), (double)(dE > 2 ? coords[dE * q + 2] : 0.),
15979371c9d4SSatish Balay                                     (double)(PetscSqr(PetscRealPart(interpolant[fc] - funcVal[fc])) * wt * fegeom.detJ[q])));
15984bee2e38SMatthew G. Knepley             elemDiff += PetscSqr(PetscRealPart(interpolant[fc] - funcVal[fc])) * wt * fegeom.detJ[q];
159973d901b8SMatthew G. Knepley           }
160073d901b8SMatthew G. Knepley         }
1601083401c6SMatthew G. Knepley         fOff += Nb;
16029c3cf19fSMatthew G. Knepley         qc += Nc;
1603083401c6SMatthew G. Knepley         localDiff[fields[f]] += elemDiff;
160463a3b9bcSJacob Faibussowitsch         if (debug) PetscCall(PetscPrintf(PETSC_COMM_SELF, "  cell %" PetscInt_FMT " field %" PetscInt_FMT " cum diff %g\n", cell, fields[f], (double)localDiff[fields[f]]));
160573d901b8SMatthew G. Knepley       }
16069566063dSJacob Faibussowitsch       PetscCall(DMPlexVecRestoreClosure(dm, NULL, localX, cell, NULL, &x));
1607083401c6SMatthew G. Knepley     }
1608083401c6SMatthew G. Knepley     if (label) {
16099566063dSJacob Faibussowitsch       PetscCall(ISRestoreIndices(pointIS, &points));
16109566063dSJacob Faibussowitsch       PetscCall(ISDestroy(&pointIS));
1611083401c6SMatthew G. Knepley     }
16129566063dSJacob Faibussowitsch     PetscCall(ISRestoreIndices(fieldIS, &fields));
16139566063dSJacob Faibussowitsch     PetscCall(PetscFree6(funcVal, interpolant, coords, fegeom.detJ, fegeom.J, fegeom.invJ));
161473d901b8SMatthew G. Knepley   }
16159566063dSJacob Faibussowitsch   PetscCall(DMRestoreLocalVector(dm, &localX));
16161c2dc1cbSBarry Smith   PetscCall(MPIU_Allreduce(localDiff, diff, Nf, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)dm)));
16179566063dSJacob Faibussowitsch   PetscCall(PetscFree(localDiff));
1618083401c6SMatthew G. Knepley   for (f = 0; f < Nf; ++f) diff[f] = PetscSqrtReal(diff[f]);
16193ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
162073d901b8SMatthew G. Knepley }
162173d901b8SMatthew G. Knepley 
1622e729f68cSMatthew G. Knepley /*@C
1623e729f68cSMatthew G. Knepley   DMPlexComputeL2DiffVec - This function computes the cellwise L_2 difference between a function u and an FEM interpolant solution u_h, and stores it in a Vec.
1624e729f68cSMatthew G. Knepley 
162520f4b53cSBarry Smith   Collective
1626c0f8e1fdSMatthew G. Knepley 
1627e729f68cSMatthew G. Knepley   Input Parameters:
1628a1cb98faSBarry Smith + dm    - The `DM`
16290163fd50SMatthew G. Knepley . time  - The time
163020f4b53cSBarry Smith . funcs - The functions to evaluate for each field component: `NULL` means that component does not contribute to error calculation
163120f4b53cSBarry Smith . ctxs  - Optional array of contexts to pass to each function, or `NULL`.
1632e729f68cSMatthew G. Knepley - X     - The coefficient vector u_h
1633e729f68cSMatthew G. Knepley 
1634e729f68cSMatthew G. Knepley   Output Parameter:
163520f4b53cSBarry Smith . D - A `Vec` which holds the difference ||u - u_h||_2 for each cell
1636e729f68cSMatthew G. Knepley 
1637e729f68cSMatthew G. Knepley   Level: developer
1638e729f68cSMatthew G. Knepley 
16391cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMProjectFunction()`, `DMComputeL2Diff()`, `DMPlexComputeL2FieldDiff()`, `DMComputeL2GradientDiff()`
1640e729f68cSMatthew G. Knepley @*/
1641d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeL2DiffVec(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal[], PetscInt, PetscScalar *, void *), void **ctxs, Vec X, Vec D)
1642d71ae5a4SJacob Faibussowitsch {
1643e729f68cSMatthew G. Knepley   PetscSection     section;
1644e729f68cSMatthew G. Knepley   PetscQuadrature  quad;
1645e729f68cSMatthew G. Knepley   Vec              localX;
16464bee2e38SMatthew G. Knepley   PetscFEGeom      fegeom;
1647e729f68cSMatthew G. Knepley   PetscScalar     *funcVal, *interpolant;
16484bee2e38SMatthew G. Knepley   PetscReal       *coords;
1649e729f68cSMatthew G. Knepley   const PetscReal *quadPoints, *quadWeights;
1650485ad865SMatthew G. Knepley   PetscInt         dim, coordDim, numFields, numComponents = 0, qNc, Nq, cStart, cEnd, c, field, fieldOffset;
1651e729f68cSMatthew G. Knepley 
1652e729f68cSMatthew G. Knepley   PetscFunctionBegin;
16539566063dSJacob Faibussowitsch   PetscCall(VecSet(D, 0.0));
16549566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dm, &dim));
16559566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateDim(dm, &coordDim));
16569566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dm, &section));
16579566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetNumFields(section, &numFields));
16589566063dSJacob Faibussowitsch   PetscCall(DMGetLocalVector(dm, &localX));
16599566063dSJacob Faibussowitsch   PetscCall(DMProjectFunctionLocal(dm, time, funcs, ctxs, INSERT_BC_VALUES, localX));
16609566063dSJacob Faibussowitsch   PetscCall(DMGlobalToLocalBegin(dm, X, INSERT_VALUES, localX));
16619566063dSJacob Faibussowitsch   PetscCall(DMGlobalToLocalEnd(dm, X, INSERT_VALUES, localX));
1662e729f68cSMatthew G. Knepley   for (field = 0; field < numFields; ++field) {
1663e729f68cSMatthew G. Knepley     PetscObject  obj;
1664e729f68cSMatthew G. Knepley     PetscClassId id;
1665e729f68cSMatthew G. Knepley     PetscInt     Nc;
1666e729f68cSMatthew G. Knepley 
16679566063dSJacob Faibussowitsch     PetscCall(DMGetField(dm, field, NULL, &obj));
16689566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetClassId(obj, &id));
1669e729f68cSMatthew G. Knepley     if (id == PETSCFE_CLASSID) {
1670e729f68cSMatthew G. Knepley       PetscFE fe = (PetscFE)obj;
1671e729f68cSMatthew G. Knepley 
16729566063dSJacob Faibussowitsch       PetscCall(PetscFEGetQuadrature(fe, &quad));
16739566063dSJacob Faibussowitsch       PetscCall(PetscFEGetNumComponents(fe, &Nc));
1674e729f68cSMatthew G. Knepley     } else if (id == PETSCFV_CLASSID) {
1675e729f68cSMatthew G. Knepley       PetscFV fv = (PetscFV)obj;
1676e729f68cSMatthew G. Knepley 
16779566063dSJacob Faibussowitsch       PetscCall(PetscFVGetQuadrature(fv, &quad));
16789566063dSJacob Faibussowitsch       PetscCall(PetscFVGetNumComponents(fv, &Nc));
167963a3b9bcSJacob Faibussowitsch     } else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, field);
1680e729f68cSMatthew G. Knepley     numComponents += Nc;
1681e729f68cSMatthew G. Knepley   }
16829566063dSJacob Faibussowitsch   PetscCall(PetscQuadratureGetData(quad, NULL, &qNc, &Nq, &quadPoints, &quadWeights));
168363a3b9bcSJacob Faibussowitsch   PetscCheck(!(qNc != 1) || !(qNc != numComponents), PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_SIZ, "Quadrature components %" PetscInt_FMT " != %" PetscInt_FMT " field components", qNc, numComponents);
16849566063dSJacob Faibussowitsch   PetscCall(PetscMalloc6(numComponents, &funcVal, numComponents, &interpolant, coordDim * Nq, &coords, Nq, &fegeom.detJ, coordDim * coordDim * Nq, &fegeom.J, coordDim * coordDim * Nq, &fegeom.invJ));
16859566063dSJacob Faibussowitsch   PetscCall(DMPlexGetSimplexOrBoxCells(dm, 0, &cStart, &cEnd));
1686e729f68cSMatthew G. Knepley   for (c = cStart; c < cEnd; ++c) {
1687e729f68cSMatthew G. Knepley     PetscScalar *x        = NULL;
16886f288a59SMatthew G. Knepley     PetscScalar  elemDiff = 0.0;
16899c3cf19fSMatthew G. Knepley     PetscInt     qc       = 0;
1690e729f68cSMatthew G. Knepley 
16919566063dSJacob Faibussowitsch     PetscCall(DMPlexComputeCellGeometryFEM(dm, c, quad, coords, fegeom.J, fegeom.invJ, fegeom.detJ));
16929566063dSJacob Faibussowitsch     PetscCall(DMPlexVecGetClosure(dm, NULL, localX, c, NULL, &x));
1693e729f68cSMatthew G. Knepley 
1694e729f68cSMatthew G. Knepley     for (field = 0, fieldOffset = 0; field < numFields; ++field) {
1695e729f68cSMatthew G. Knepley       PetscObject  obj;
1696e729f68cSMatthew G. Knepley       PetscClassId id;
1697e729f68cSMatthew G. Knepley       void *const  ctx = ctxs ? ctxs[field] : NULL;
1698e729f68cSMatthew G. Knepley       PetscInt     Nb, Nc, q, fc;
1699e729f68cSMatthew G. Knepley 
17009566063dSJacob Faibussowitsch       PetscCall(DMGetField(dm, field, NULL, &obj));
17019566063dSJacob Faibussowitsch       PetscCall(PetscObjectGetClassId(obj, &id));
17029371c9d4SSatish Balay       if (id == PETSCFE_CLASSID) {
17039371c9d4SSatish Balay         PetscCall(PetscFEGetNumComponents((PetscFE)obj, &Nc));
17049371c9d4SSatish Balay         PetscCall(PetscFEGetDimension((PetscFE)obj, &Nb));
17059371c9d4SSatish Balay       } else if (id == PETSCFV_CLASSID) {
17069371c9d4SSatish Balay         PetscCall(PetscFVGetNumComponents((PetscFV)obj, &Nc));
17079371c9d4SSatish Balay         Nb = 1;
17089371c9d4SSatish Balay       } else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, field);
170923f34ed2SToby Isaac       if (funcs[field]) {
17107318780aSToby Isaac         for (q = 0; q < Nq; ++q) {
17112a4e142eSMatthew G. Knepley           PetscFEGeom qgeom;
17122a4e142eSMatthew G. Knepley 
17132a4e142eSMatthew G. Knepley           qgeom.dimEmbed = fegeom.dimEmbed;
17142a4e142eSMatthew G. Knepley           qgeom.J        = &fegeom.J[q * coordDim * coordDim];
17152a4e142eSMatthew G. Knepley           qgeom.invJ     = &fegeom.invJ[q * coordDim * coordDim];
17162a4e142eSMatthew G. Knepley           qgeom.detJ     = &fegeom.detJ[q];
171763a3b9bcSJacob Faibussowitsch           PetscCheck(fegeom.detJ[q] > 0.0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Invalid determinant %g for element %" PetscInt_FMT ", quadrature points %" PetscInt_FMT, (double)fegeom.detJ[q], c, q);
17189566063dSJacob Faibussowitsch           PetscCall((*funcs[field])(coordDim, time, &coords[q * coordDim], Nc, funcVal, ctx));
1719c3e24edfSBarry Smith #if defined(needs_fix_with_return_code_argument)
1720e735a8a9SMatthew G. Knepley           if (ierr) {
17219566063dSJacob Faibussowitsch             PetscCall(DMPlexVecRestoreClosure(dm, NULL, localX, c, NULL, &x));
17229566063dSJacob Faibussowitsch             PetscCall(PetscFree6(funcVal, interpolant, coords, fegeom.detJ, fegeom.J, fegeom.invJ));
17239566063dSJacob Faibussowitsch             PetscCall(DMRestoreLocalVector(dm, &localX));
1724e735a8a9SMatthew G. Knepley           }
1725c3e24edfSBarry Smith #endif
17269566063dSJacob Faibussowitsch           if (id == PETSCFE_CLASSID) PetscCall(PetscFEInterpolate_Static((PetscFE)obj, &x[fieldOffset], &qgeom, q, interpolant));
17279566063dSJacob Faibussowitsch           else if (id == PETSCFV_CLASSID) PetscCall(PetscFVInterpolate_Static((PetscFV)obj, &x[fieldOffset], q, interpolant));
172863a3b9bcSJacob Faibussowitsch           else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, field);
1729e729f68cSMatthew G. Knepley           for (fc = 0; fc < Nc; ++fc) {
1730beaa55a6SMatthew G. Knepley             const PetscReal wt = quadWeights[q * qNc + (qNc == 1 ? 0 : qc + fc)];
17314bee2e38SMatthew G. Knepley             elemDiff += PetscSqr(PetscRealPart(interpolant[fc] - funcVal[fc])) * wt * fegeom.detJ[q];
1732e729f68cSMatthew G. Knepley           }
1733e729f68cSMatthew G. Knepley         }
173423f34ed2SToby Isaac       }
1735beaa55a6SMatthew G. Knepley       fieldOffset += Nb;
17369c3cf19fSMatthew G. Knepley       qc += Nc;
1737e729f68cSMatthew G. Knepley     }
17389566063dSJacob Faibussowitsch     PetscCall(DMPlexVecRestoreClosure(dm, NULL, localX, c, NULL, &x));
17399566063dSJacob Faibussowitsch     PetscCall(VecSetValue(D, c - cStart, elemDiff, INSERT_VALUES));
1740e729f68cSMatthew G. Knepley   }
17419566063dSJacob Faibussowitsch   PetscCall(PetscFree6(funcVal, interpolant, coords, fegeom.detJ, fegeom.J, fegeom.invJ));
17429566063dSJacob Faibussowitsch   PetscCall(DMRestoreLocalVector(dm, &localX));
17439566063dSJacob Faibussowitsch   PetscCall(VecSqrtAbs(D));
17443ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1745e729f68cSMatthew G. Knepley }
1746e729f68cSMatthew G. Knepley 
17475f0b18bfSMatthew G. Knepley /*@
174820f4b53cSBarry Smith   DMPlexComputeClementInterpolant - This function computes the L2 projection of the cellwise values of a function u onto P1
17495f0b18bfSMatthew G. Knepley 
175020f4b53cSBarry Smith   Collective
17515f0b18bfSMatthew G. Knepley 
17525f0b18bfSMatthew G. Knepley   Input Parameters:
1753a1cb98faSBarry Smith + dm   - The `DM`
17545f0b18bfSMatthew G. Knepley - locX - The coefficient vector u_h
17555f0b18bfSMatthew G. Knepley 
17565f0b18bfSMatthew G. Knepley   Output Parameter:
1757a1cb98faSBarry Smith . locC - A `Vec` which holds the Clement interpolant of the function
17585f0b18bfSMatthew G. Knepley 
17595f0b18bfSMatthew G. Knepley   Level: developer
17605f0b18bfSMatthew G. Knepley 
1761a1cb98faSBarry Smith   Note:
1762a1cb98faSBarry Smith   $ u_h(v_i) = \sum_{T_i \in support(v_i)} |T_i| u_h(T_i) / \sum_{T_i \in support(v_i)} |T_i| $ where $ |T_i| $ is the cell volume
1763a1cb98faSBarry Smith 
17641cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMProjectFunction()`, `DMComputeL2Diff()`, `DMPlexComputeL2FieldDiff()`, `DMComputeL2GradientDiff()`
17655f0b18bfSMatthew G. Knepley @*/
1766d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeClementInterpolant(DM dm, Vec locX, Vec locC)
1767d71ae5a4SJacob Faibussowitsch {
17685f0b18bfSMatthew G. Knepley   PetscInt         debug = ((DM_Plex *)dm->data)->printFEM;
17695f0b18bfSMatthew G. Knepley   DM               dmc;
17705f0b18bfSMatthew G. Knepley   PetscQuadrature  quad;
17715f0b18bfSMatthew G. Knepley   PetscScalar     *interpolant, *valsum;
17725f0b18bfSMatthew G. Knepley   PetscFEGeom      fegeom;
17735f0b18bfSMatthew G. Knepley   PetscReal       *coords;
17745f0b18bfSMatthew G. Knepley   const PetscReal *quadPoints, *quadWeights;
17755f0b18bfSMatthew G. Knepley   PetscInt         dim, cdim, Nf, f, Nc = 0, Nq, qNc, cStart, cEnd, vStart, vEnd, v;
17765f0b18bfSMatthew G. Knepley 
17775f0b18bfSMatthew G. Knepley   PetscFunctionBegin;
17789566063dSJacob Faibussowitsch   PetscCall(PetscCitationsRegister(ClementCitation, &Clementcite));
17799566063dSJacob Faibussowitsch   PetscCall(VecGetDM(locC, &dmc));
17809566063dSJacob Faibussowitsch   PetscCall(VecSet(locC, 0.0));
17819566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dm, &dim));
17829566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateDim(dm, &cdim));
17835f0b18bfSMatthew G. Knepley   fegeom.dimEmbed = cdim;
17849566063dSJacob Faibussowitsch   PetscCall(DMGetNumFields(dm, &Nf));
17855f0b18bfSMatthew G. Knepley   PetscCheck(Nf > 0, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of fields is zero!");
17865f0b18bfSMatthew G. Knepley   for (f = 0; f < Nf; ++f) {
17875f0b18bfSMatthew G. Knepley     PetscObject  obj;
17885f0b18bfSMatthew G. Knepley     PetscClassId id;
17895f0b18bfSMatthew G. Knepley     PetscInt     fNc;
17905f0b18bfSMatthew G. Knepley 
17919566063dSJacob Faibussowitsch     PetscCall(DMGetField(dm, f, NULL, &obj));
17929566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetClassId(obj, &id));
17935f0b18bfSMatthew G. Knepley     if (id == PETSCFE_CLASSID) {
17945f0b18bfSMatthew G. Knepley       PetscFE fe = (PetscFE)obj;
17955f0b18bfSMatthew G. Knepley 
17969566063dSJacob Faibussowitsch       PetscCall(PetscFEGetQuadrature(fe, &quad));
17979566063dSJacob Faibussowitsch       PetscCall(PetscFEGetNumComponents(fe, &fNc));
17985f0b18bfSMatthew G. Knepley     } else if (id == PETSCFV_CLASSID) {
17995f0b18bfSMatthew G. Knepley       PetscFV fv = (PetscFV)obj;
18005f0b18bfSMatthew G. Knepley 
18019566063dSJacob Faibussowitsch       PetscCall(PetscFVGetQuadrature(fv, &quad));
18029566063dSJacob Faibussowitsch       PetscCall(PetscFVGetNumComponents(fv, &fNc));
180363a3b9bcSJacob Faibussowitsch     } else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, f);
18045f0b18bfSMatthew G. Knepley     Nc += fNc;
18055f0b18bfSMatthew G. Knepley   }
18069566063dSJacob Faibussowitsch   PetscCall(PetscQuadratureGetData(quad, NULL, &qNc, &Nq, &quadPoints, &quadWeights));
180763a3b9bcSJacob Faibussowitsch   PetscCheck(qNc == 1, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_SIZ, "Quadrature components %" PetscInt_FMT " > 1", qNc);
18089566063dSJacob Faibussowitsch   PetscCall(PetscMalloc6(Nc * 2, &valsum, Nc, &interpolant, cdim * Nq, &coords, Nq, &fegeom.detJ, cdim * cdim * Nq, &fegeom.J, cdim * cdim * Nq, &fegeom.invJ));
18099566063dSJacob Faibussowitsch   PetscCall(DMPlexGetDepthStratum(dm, 0, &vStart, &vEnd));
18109566063dSJacob Faibussowitsch   PetscCall(DMPlexGetSimplexOrBoxCells(dm, 0, &cStart, &cEnd));
18115f0b18bfSMatthew G. Knepley   for (v = vStart; v < vEnd; ++v) {
18125f0b18bfSMatthew G. Knepley     PetscScalar volsum = 0.0;
18135f0b18bfSMatthew G. Knepley     PetscInt   *star   = NULL;
18145f0b18bfSMatthew G. Knepley     PetscInt    starSize, st, fc;
18155f0b18bfSMatthew G. Knepley 
18169566063dSJacob Faibussowitsch     PetscCall(PetscArrayzero(valsum, Nc));
18179566063dSJacob Faibussowitsch     PetscCall(DMPlexGetTransitiveClosure(dm, v, PETSC_FALSE, &starSize, &star));
18185f0b18bfSMatthew G. Knepley     for (st = 0; st < starSize * 2; st += 2) {
18195f0b18bfSMatthew G. Knepley       const PetscInt cell = star[st];
18205f0b18bfSMatthew G. Knepley       PetscScalar   *val  = &valsum[Nc];
18215f0b18bfSMatthew G. Knepley       PetscScalar   *x    = NULL;
18225f0b18bfSMatthew G. Knepley       PetscReal      vol  = 0.0;
18235f0b18bfSMatthew G. Knepley       PetscInt       foff = 0;
18245f0b18bfSMatthew G. Knepley 
18255f0b18bfSMatthew G. Knepley       if ((cell < cStart) || (cell >= cEnd)) continue;
18269566063dSJacob Faibussowitsch       PetscCall(DMPlexComputeCellGeometryFEM(dm, cell, quad, coords, fegeom.J, fegeom.invJ, fegeom.detJ));
18279566063dSJacob Faibussowitsch       PetscCall(DMPlexVecGetClosure(dm, NULL, locX, cell, NULL, &x));
18285f0b18bfSMatthew G. Knepley       for (f = 0; f < Nf; ++f) {
18295f0b18bfSMatthew G. Knepley         PetscObject  obj;
18305f0b18bfSMatthew G. Knepley         PetscClassId id;
18315f0b18bfSMatthew G. Knepley         PetscInt     Nb, fNc, q;
18325f0b18bfSMatthew G. Knepley 
18339566063dSJacob Faibussowitsch         PetscCall(PetscArrayzero(val, Nc));
18349566063dSJacob Faibussowitsch         PetscCall(DMGetField(dm, f, NULL, &obj));
18359566063dSJacob Faibussowitsch         PetscCall(PetscObjectGetClassId(obj, &id));
18369371c9d4SSatish Balay         if (id == PETSCFE_CLASSID) {
18379371c9d4SSatish Balay           PetscCall(PetscFEGetNumComponents((PetscFE)obj, &fNc));
18389371c9d4SSatish Balay           PetscCall(PetscFEGetDimension((PetscFE)obj, &Nb));
18399371c9d4SSatish Balay         } else if (id == PETSCFV_CLASSID) {
18409371c9d4SSatish Balay           PetscCall(PetscFVGetNumComponents((PetscFV)obj, &fNc));
18419371c9d4SSatish Balay           Nb = 1;
18429371c9d4SSatish Balay         } else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, f);
18435f0b18bfSMatthew G. Knepley         for (q = 0; q < Nq; ++q) {
18445f0b18bfSMatthew G. Knepley           const PetscReal wt = quadWeights[q] * fegeom.detJ[q];
18455f0b18bfSMatthew G. Knepley           PetscFEGeom     qgeom;
18465f0b18bfSMatthew G. Knepley 
18475f0b18bfSMatthew G. Knepley           qgeom.dimEmbed = fegeom.dimEmbed;
18485f0b18bfSMatthew G. Knepley           qgeom.J        = &fegeom.J[q * cdim * cdim];
18495f0b18bfSMatthew G. Knepley           qgeom.invJ     = &fegeom.invJ[q * cdim * cdim];
18505f0b18bfSMatthew G. Knepley           qgeom.detJ     = &fegeom.detJ[q];
185163a3b9bcSJacob Faibussowitsch           PetscCheck(fegeom.detJ[q] > 0.0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Invalid determinant %g for element %" PetscInt_FMT ", quadrature points %" PetscInt_FMT, (double)fegeom.detJ[q], cell, q);
18529566063dSJacob Faibussowitsch           if (id == PETSCFE_CLASSID) PetscCall(PetscFEInterpolate_Static((PetscFE)obj, &x[foff], &qgeom, q, interpolant));
185363a3b9bcSJacob Faibussowitsch           else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, f);
18545f0b18bfSMatthew G. Knepley           for (fc = 0; fc < fNc; ++fc) val[foff + fc] += interpolant[fc] * wt;
18555f0b18bfSMatthew G. Knepley           vol += wt;
18565f0b18bfSMatthew G. Knepley         }
18575f0b18bfSMatthew G. Knepley         foff += Nb;
18585f0b18bfSMatthew G. Knepley       }
18599566063dSJacob Faibussowitsch       PetscCall(DMPlexVecRestoreClosure(dm, NULL, locX, cell, NULL, &x));
18605f0b18bfSMatthew G. Knepley       for (fc = 0; fc < Nc; ++fc) valsum[fc] += val[fc];
18615f0b18bfSMatthew G. Knepley       volsum += vol;
18625f0b18bfSMatthew G. Knepley       if (debug) {
18639566063dSJacob Faibussowitsch         PetscCall(PetscPrintf(PETSC_COMM_SELF, "Vertex %" PetscInt_FMT " Cell %" PetscInt_FMT " value: [", v, cell));
18645f0b18bfSMatthew G. Knepley         for (fc = 0; fc < Nc; ++fc) {
18659566063dSJacob Faibussowitsch           if (fc) PetscCall(PetscPrintf(PETSC_COMM_SELF, ", "));
18669566063dSJacob Faibussowitsch           PetscCall(PetscPrintf(PETSC_COMM_SELF, "%g", (double)PetscRealPart(val[fc])));
18675f0b18bfSMatthew G. Knepley         }
18689566063dSJacob Faibussowitsch         PetscCall(PetscPrintf(PETSC_COMM_SELF, "]\n"));
18695f0b18bfSMatthew G. Knepley       }
18705f0b18bfSMatthew G. Knepley     }
18715f0b18bfSMatthew G. Knepley     for (fc = 0; fc < Nc; ++fc) valsum[fc] /= volsum;
18729566063dSJacob Faibussowitsch     PetscCall(DMPlexRestoreTransitiveClosure(dm, v, PETSC_FALSE, &starSize, &star));
18739566063dSJacob Faibussowitsch     PetscCall(DMPlexVecSetClosure(dmc, NULL, locC, v, valsum, INSERT_VALUES));
18745f0b18bfSMatthew G. Knepley   }
18759566063dSJacob Faibussowitsch   PetscCall(PetscFree6(valsum, interpolant, coords, fegeom.detJ, fegeom.J, fegeom.invJ));
18763ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
18775f0b18bfSMatthew G. Knepley }
18785f0b18bfSMatthew G. Knepley 
18795f0b18bfSMatthew G. Knepley /*@
188020f4b53cSBarry Smith   DMPlexComputeGradientClementInterpolant - This function computes the L2 projection of the cellwise gradient of a function u onto P1
18811555c271SMatthew G. Knepley 
188220f4b53cSBarry Smith   Collective
1883c0f8e1fdSMatthew G. Knepley 
18841555c271SMatthew G. Knepley   Input Parameters:
1885a1cb98faSBarry Smith + dm   - The `DM`
18865f0b18bfSMatthew G. Knepley - locX - The coefficient vector u_h
18871555c271SMatthew G. Knepley 
18881555c271SMatthew G. Knepley   Output Parameter:
1889a1cb98faSBarry Smith . locC - A `Vec` which holds the Clement interpolant of the gradient
18901555c271SMatthew G. Knepley 
18911555c271SMatthew G. Knepley   Level: developer
18921555c271SMatthew G. Knepley 
1893a1cb98faSBarry Smith   Note:
1894a1cb98faSBarry Smith   $\nabla u_h(v_i) = \sum_{T_i \in support(v_i)} |T_i| \nabla u_h(T_i) / \sum_{T_i \in support(v_i)} |T_i| $ where $ |T_i| $ is the cell volume
1895a1cb98faSBarry Smith 
18961cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMProjectFunction()`, `DMComputeL2Diff()`, `DMPlexComputeL2FieldDiff()`, `DMComputeL2GradientDiff()`
18971555c271SMatthew G. Knepley @*/
1898d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeGradientClementInterpolant(DM dm, Vec locX, Vec locC)
1899d71ae5a4SJacob Faibussowitsch {
1900db1066baSMatthew G. Knepley   DM_Plex         *mesh  = (DM_Plex *)dm->data;
1901db1066baSMatthew G. Knepley   PetscInt         debug = mesh->printFEM;
19021555c271SMatthew G. Knepley   DM               dmC;
19031555c271SMatthew G. Knepley   PetscQuadrature  quad;
19041555c271SMatthew G. Knepley   PetscScalar     *interpolant, *gradsum;
19054bee2e38SMatthew G. Knepley   PetscFEGeom      fegeom;
19064bee2e38SMatthew G. Knepley   PetscReal       *coords;
19071555c271SMatthew G. Knepley   const PetscReal *quadPoints, *quadWeights;
1908485ad865SMatthew G. Knepley   PetscInt         dim, coordDim, numFields, numComponents = 0, qNc, Nq, cStart, cEnd, vStart, vEnd, v, field, fieldOffset;
19091555c271SMatthew G. Knepley 
19101555c271SMatthew G. Knepley   PetscFunctionBegin;
19119566063dSJacob Faibussowitsch   PetscCall(PetscCitationsRegister(ClementCitation, &Clementcite));
19129566063dSJacob Faibussowitsch   PetscCall(VecGetDM(locC, &dmC));
19139566063dSJacob Faibussowitsch   PetscCall(VecSet(locC, 0.0));
19149566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dm, &dim));
19159566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateDim(dm, &coordDim));
19164bee2e38SMatthew G. Knepley   fegeom.dimEmbed = coordDim;
19179566063dSJacob Faibussowitsch   PetscCall(DMGetNumFields(dm, &numFields));
19185f80ce2aSJacob Faibussowitsch   PetscCheck(numFields, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of fields is zero!");
19191555c271SMatthew G. Knepley   for (field = 0; field < numFields; ++field) {
19201555c271SMatthew G. Knepley     PetscObject  obj;
19211555c271SMatthew G. Knepley     PetscClassId id;
19221555c271SMatthew G. Knepley     PetscInt     Nc;
19231555c271SMatthew G. Knepley 
19249566063dSJacob Faibussowitsch     PetscCall(DMGetField(dm, field, NULL, &obj));
19259566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetClassId(obj, &id));
19261555c271SMatthew G. Knepley     if (id == PETSCFE_CLASSID) {
19271555c271SMatthew G. Knepley       PetscFE fe = (PetscFE)obj;
19281555c271SMatthew G. Knepley 
19299566063dSJacob Faibussowitsch       PetscCall(PetscFEGetQuadrature(fe, &quad));
19309566063dSJacob Faibussowitsch       PetscCall(PetscFEGetNumComponents(fe, &Nc));
19311555c271SMatthew G. Knepley     } else if (id == PETSCFV_CLASSID) {
19321555c271SMatthew G. Knepley       PetscFV fv = (PetscFV)obj;
19331555c271SMatthew G. Knepley 
19349566063dSJacob Faibussowitsch       PetscCall(PetscFVGetQuadrature(fv, &quad));
19359566063dSJacob Faibussowitsch       PetscCall(PetscFVGetNumComponents(fv, &Nc));
193663a3b9bcSJacob Faibussowitsch     } else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, field);
19371555c271SMatthew G. Knepley     numComponents += Nc;
19381555c271SMatthew G. Knepley   }
19399566063dSJacob Faibussowitsch   PetscCall(PetscQuadratureGetData(quad, NULL, &qNc, &Nq, &quadPoints, &quadWeights));
194063a3b9bcSJacob Faibussowitsch   PetscCheck(!(qNc != 1) || !(qNc != numComponents), PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_SIZ, "Quadrature components %" PetscInt_FMT " != %" PetscInt_FMT " field components", qNc, numComponents);
19419566063dSJacob Faibussowitsch   PetscCall(PetscMalloc6(coordDim * numComponents * 2, &gradsum, coordDim * numComponents, &interpolant, coordDim * Nq, &coords, Nq, &fegeom.detJ, coordDim * coordDim * Nq, &fegeom.J, coordDim * coordDim * Nq, &fegeom.invJ));
19429566063dSJacob Faibussowitsch   PetscCall(DMPlexGetDepthStratum(dm, 0, &vStart, &vEnd));
19439566063dSJacob Faibussowitsch   PetscCall(DMPlexGetSimplexOrBoxCells(dm, 0, &cStart, &cEnd));
19441555c271SMatthew G. Knepley   for (v = vStart; v < vEnd; ++v) {
19451555c271SMatthew G. Knepley     PetscScalar volsum = 0.0;
19461555c271SMatthew G. Knepley     PetscInt   *star   = NULL;
19471555c271SMatthew G. Knepley     PetscInt    starSize, st, d, fc;
19481555c271SMatthew G. Knepley 
19499566063dSJacob Faibussowitsch     PetscCall(PetscArrayzero(gradsum, coordDim * numComponents));
19509566063dSJacob Faibussowitsch     PetscCall(DMPlexGetTransitiveClosure(dm, v, PETSC_FALSE, &starSize, &star));
19511555c271SMatthew G. Knepley     for (st = 0; st < starSize * 2; st += 2) {
19521555c271SMatthew G. Knepley       const PetscInt cell = star[st];
19531555c271SMatthew G. Knepley       PetscScalar   *grad = &gradsum[coordDim * numComponents];
19541555c271SMatthew G. Knepley       PetscScalar   *x    = NULL;
19551555c271SMatthew G. Knepley       PetscReal      vol  = 0.0;
19561555c271SMatthew G. Knepley 
19571555c271SMatthew G. Knepley       if ((cell < cStart) || (cell >= cEnd)) continue;
19589566063dSJacob Faibussowitsch       PetscCall(DMPlexComputeCellGeometryFEM(dm, cell, quad, coords, fegeom.J, fegeom.invJ, fegeom.detJ));
19599566063dSJacob Faibussowitsch       PetscCall(DMPlexVecGetClosure(dm, NULL, locX, cell, NULL, &x));
19601555c271SMatthew G. Knepley       for (field = 0, fieldOffset = 0; field < numFields; ++field) {
19611555c271SMatthew G. Knepley         PetscObject  obj;
19621555c271SMatthew G. Knepley         PetscClassId id;
19631555c271SMatthew G. Knepley         PetscInt     Nb, Nc, q, qc = 0;
19641555c271SMatthew G. Knepley 
19659566063dSJacob Faibussowitsch         PetscCall(PetscArrayzero(grad, coordDim * numComponents));
19669566063dSJacob Faibussowitsch         PetscCall(DMGetField(dm, field, NULL, &obj));
19679566063dSJacob Faibussowitsch         PetscCall(PetscObjectGetClassId(obj, &id));
19689371c9d4SSatish Balay         if (id == PETSCFE_CLASSID) {
19699371c9d4SSatish Balay           PetscCall(PetscFEGetNumComponents((PetscFE)obj, &Nc));
19709371c9d4SSatish Balay           PetscCall(PetscFEGetDimension((PetscFE)obj, &Nb));
19719371c9d4SSatish Balay         } else if (id == PETSCFV_CLASSID) {
19729371c9d4SSatish Balay           PetscCall(PetscFVGetNumComponents((PetscFV)obj, &Nc));
19739371c9d4SSatish Balay           Nb = 1;
19749371c9d4SSatish Balay         } else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, field);
19751555c271SMatthew G. Knepley         for (q = 0; q < Nq; ++q) {
19762a4e142eSMatthew G. Knepley           PetscFEGeom qgeom;
19772a4e142eSMatthew G. Knepley 
19782a4e142eSMatthew G. Knepley           qgeom.dimEmbed = fegeom.dimEmbed;
19792a4e142eSMatthew G. Knepley           qgeom.J        = &fegeom.J[q * coordDim * coordDim];
19802a4e142eSMatthew G. Knepley           qgeom.invJ     = &fegeom.invJ[q * coordDim * coordDim];
19812a4e142eSMatthew G. Knepley           qgeom.detJ     = &fegeom.detJ[q];
198263a3b9bcSJacob Faibussowitsch           PetscCheck(fegeom.detJ[q] > 0.0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Invalid determinant %g for element %" PetscInt_FMT ", quadrature points %" PetscInt_FMT, (double)fegeom.detJ[q], cell, q);
19839566063dSJacob Faibussowitsch           if (id == PETSCFE_CLASSID) PetscCall(PetscFEInterpolateGradient_Static((PetscFE)obj, 1, &x[fieldOffset], &qgeom, q, interpolant));
198463a3b9bcSJacob Faibussowitsch           else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, field);
19851555c271SMatthew G. Knepley           for (fc = 0; fc < Nc; ++fc) {
198653d2db2dSJoe Wallwork             const PetscReal wt = quadWeights[q * qNc + qc];
19871555c271SMatthew G. Knepley 
19884bee2e38SMatthew G. Knepley             for (d = 0; d < coordDim; ++d) grad[fc * coordDim + d] += interpolant[fc * dim + d] * wt * fegeom.detJ[q];
19891555c271SMatthew G. Knepley           }
19904bee2e38SMatthew G. Knepley           vol += quadWeights[q * qNc] * fegeom.detJ[q];
19911555c271SMatthew G. Knepley         }
19921555c271SMatthew G. Knepley         fieldOffset += Nb;
19931555c271SMatthew G. Knepley         qc += Nc;
19941555c271SMatthew G. Knepley       }
19959566063dSJacob Faibussowitsch       PetscCall(DMPlexVecRestoreClosure(dm, NULL, locX, cell, NULL, &x));
1996f8527842SMatthew G. Knepley       for (fc = 0; fc < numComponents; ++fc) {
1997ad540459SPierre Jolivet         for (d = 0; d < coordDim; ++d) gradsum[fc * coordDim + d] += grad[fc * coordDim + d];
1998f8527842SMatthew G. Knepley       }
1999f8527842SMatthew G. Knepley       volsum += vol;
2000db1066baSMatthew G. Knepley       if (debug) {
20019566063dSJacob Faibussowitsch         PetscCall(PetscPrintf(PETSC_COMM_SELF, "Vertex %" PetscInt_FMT " Cell %" PetscInt_FMT " gradient: [", v, cell));
20021555c271SMatthew G. Knepley         for (fc = 0; fc < numComponents; ++fc) {
20031555c271SMatthew G. Knepley           for (d = 0; d < coordDim; ++d) {
20049566063dSJacob Faibussowitsch             if (fc || d > 0) PetscCall(PetscPrintf(PETSC_COMM_SELF, ", "));
20059566063dSJacob Faibussowitsch             PetscCall(PetscPrintf(PETSC_COMM_SELF, "%g", (double)PetscRealPart(grad[fc * coordDim + d])));
20061555c271SMatthew G. Knepley           }
20071555c271SMatthew G. Knepley         }
20089566063dSJacob Faibussowitsch         PetscCall(PetscPrintf(PETSC_COMM_SELF, "]\n"));
2009db1066baSMatthew G. Knepley       }
20101555c271SMatthew G. Knepley     }
20111555c271SMatthew G. Knepley     for (fc = 0; fc < numComponents; ++fc) {
20121555c271SMatthew G. Knepley       for (d = 0; d < coordDim; ++d) gradsum[fc * coordDim + d] /= volsum;
20131555c271SMatthew G. Knepley     }
20149566063dSJacob Faibussowitsch     PetscCall(DMPlexRestoreTransitiveClosure(dm, v, PETSC_FALSE, &starSize, &star));
20159566063dSJacob Faibussowitsch     PetscCall(DMPlexVecSetClosure(dmC, NULL, locC, v, gradsum, INSERT_VALUES));
20161555c271SMatthew G. Knepley   }
20179566063dSJacob Faibussowitsch   PetscCall(PetscFree6(gradsum, interpolant, coords, fegeom.detJ, fegeom.J, fegeom.invJ));
20183ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
20191555c271SMatthew G. Knepley }
20201555c271SMatthew G. Knepley 
2021d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexComputeIntegral_Internal(DM dm, Vec X, PetscInt cStart, PetscInt cEnd, PetscScalar *cintegral, void *user)
2022d71ae5a4SJacob Faibussowitsch {
2023338f77d5SMatthew G. Knepley   DM           dmAux = NULL;
202461aaff12SToby Isaac   PetscDS      prob, probAux = NULL;
202573d901b8SMatthew G. Knepley   PetscSection section, sectionAux;
2026338f77d5SMatthew G. Knepley   Vec          locX, locA;
2027c330f8ffSToby Isaac   PetscInt     dim, numCells = cEnd - cStart, c, f;
2028c330f8ffSToby Isaac   PetscBool    useFVM = PETSC_FALSE;
2029338f77d5SMatthew G. Knepley   /* DS */
2030338f77d5SMatthew G. Knepley   PetscInt           Nf, totDim, *uOff, *uOff_x, numConstants;
2031338f77d5SMatthew G. Knepley   PetscInt           NfAux, totDimAux, *aOff;
2032338f77d5SMatthew G. Knepley   PetscScalar       *u, *a;
2033338f77d5SMatthew G. Knepley   const PetscScalar *constants;
2034338f77d5SMatthew G. Knepley   /* Geometry */
2035c330f8ffSToby Isaac   PetscFEGeom       *cgeomFEM;
2036338f77d5SMatthew G. Knepley   DM                 dmGrad;
2037c330f8ffSToby Isaac   PetscQuadrature    affineQuad      = NULL;
2038338f77d5SMatthew G. Knepley   Vec                cellGeometryFVM = NULL, faceGeometryFVM = NULL, locGrad = NULL;
2039b5a3613cSMatthew G. Knepley   PetscFVCellGeom   *cgeomFVM;
2040338f77d5SMatthew G. Knepley   const PetscScalar *lgrad;
2041b7260050SToby Isaac   PetscInt           maxDegree;
2042c330f8ffSToby Isaac   DMField            coordField;
2043c330f8ffSToby Isaac   IS                 cellIS;
204473d901b8SMatthew G. Knepley 
204573d901b8SMatthew G. Knepley   PetscFunctionBegin;
20469566063dSJacob Faibussowitsch   PetscCall(DMGetDS(dm, &prob));
20479566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dm, &dim));
20489566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dm, &section));
20499566063dSJacob Faibussowitsch   PetscCall(DMGetNumFields(dm, &Nf));
2050338f77d5SMatthew G. Knepley   /* Determine which discretizations we have */
2051b5a3613cSMatthew G. Knepley   for (f = 0; f < Nf; ++f) {
2052b5a3613cSMatthew G. Knepley     PetscObject  obj;
2053b5a3613cSMatthew G. Knepley     PetscClassId id;
2054b5a3613cSMatthew G. Knepley 
20559566063dSJacob Faibussowitsch     PetscCall(PetscDSGetDiscretization(prob, f, &obj));
20569566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetClassId(obj, &id));
2057338f77d5SMatthew G. Knepley     if (id == PETSCFV_CLASSID) useFVM = PETSC_TRUE;
2058338f77d5SMatthew G. Knepley   }
2059338f77d5SMatthew G. Knepley   /* Get local solution with boundary values */
20609566063dSJacob Faibussowitsch   PetscCall(DMGetLocalVector(dm, &locX));
20619566063dSJacob Faibussowitsch   PetscCall(DMPlexInsertBoundaryValues(dm, PETSC_TRUE, locX, 0.0, NULL, NULL, NULL));
20629566063dSJacob Faibussowitsch   PetscCall(DMGlobalToLocalBegin(dm, X, INSERT_VALUES, locX));
20639566063dSJacob Faibussowitsch   PetscCall(DMGlobalToLocalEnd(dm, X, INSERT_VALUES, locX));
2064338f77d5SMatthew G. Knepley   /* Read DS information */
20659566063dSJacob Faibussowitsch   PetscCall(PetscDSGetTotalDimension(prob, &totDim));
20669566063dSJacob Faibussowitsch   PetscCall(PetscDSGetComponentOffsets(prob, &uOff));
20679566063dSJacob Faibussowitsch   PetscCall(PetscDSGetComponentDerivativeOffsets(prob, &uOff_x));
20689566063dSJacob Faibussowitsch   PetscCall(ISCreateStride(PETSC_COMM_SELF, numCells, cStart, 1, &cellIS));
20699566063dSJacob Faibussowitsch   PetscCall(PetscDSGetConstants(prob, &numConstants, &constants));
2070338f77d5SMatthew G. Knepley   /* Read Auxiliary DS information */
20719566063dSJacob Faibussowitsch   PetscCall(DMGetAuxiliaryVec(dm, NULL, 0, 0, &locA));
20729a2a23afSMatthew G. Knepley   if (locA) {
20739566063dSJacob Faibussowitsch     PetscCall(VecGetDM(locA, &dmAux));
20749566063dSJacob Faibussowitsch     PetscCall(DMGetDS(dmAux, &probAux));
20759566063dSJacob Faibussowitsch     PetscCall(PetscDSGetNumFields(probAux, &NfAux));
20769566063dSJacob Faibussowitsch     PetscCall(DMGetLocalSection(dmAux, &sectionAux));
20779566063dSJacob Faibussowitsch     PetscCall(PetscDSGetTotalDimension(probAux, &totDimAux));
20789566063dSJacob Faibussowitsch     PetscCall(PetscDSGetComponentOffsets(probAux, &aOff));
2079338f77d5SMatthew G. Knepley   }
2080338f77d5SMatthew G. Knepley   /* Allocate data  arrays */
20819566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(numCells * totDim, &u));
20829566063dSJacob Faibussowitsch   if (dmAux) PetscCall(PetscMalloc1(numCells * totDimAux, &a));
2083338f77d5SMatthew G. Knepley   /* Read out geometry */
20849566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateField(dm, &coordField));
20859566063dSJacob Faibussowitsch   PetscCall(DMFieldGetDegree(coordField, cellIS, NULL, &maxDegree));
2086b7260050SToby Isaac   if (maxDegree <= 1) {
20879566063dSJacob Faibussowitsch     PetscCall(DMFieldCreateDefaultQuadrature(coordField, cellIS, &affineQuad));
208848a46eb9SPierre Jolivet     if (affineQuad) PetscCall(DMFieldCreateFEGeom(coordField, cellIS, affineQuad, PETSC_FALSE, &cgeomFEM));
2089b5a3613cSMatthew G. Knepley   }
2090b5a3613cSMatthew G. Knepley   if (useFVM) {
2091338f77d5SMatthew G. Knepley     PetscFV   fv = NULL;
2092b5a3613cSMatthew G. Knepley     Vec       grad;
2093b5a3613cSMatthew G. Knepley     PetscInt  fStart, fEnd;
2094b5a3613cSMatthew G. Knepley     PetscBool compGrad;
2095b5a3613cSMatthew G. Knepley 
2096338f77d5SMatthew G. Knepley     for (f = 0; f < Nf; ++f) {
2097338f77d5SMatthew G. Knepley       PetscObject  obj;
2098338f77d5SMatthew G. Knepley       PetscClassId id;
2099338f77d5SMatthew G. Knepley 
21009566063dSJacob Faibussowitsch       PetscCall(PetscDSGetDiscretization(prob, f, &obj));
21019566063dSJacob Faibussowitsch       PetscCall(PetscObjectGetClassId(obj, &id));
21029371c9d4SSatish Balay       if (id == PETSCFV_CLASSID) {
21039371c9d4SSatish Balay         fv = (PetscFV)obj;
21049371c9d4SSatish Balay         break;
21059371c9d4SSatish Balay       }
2106338f77d5SMatthew G. Knepley     }
21079566063dSJacob Faibussowitsch     PetscCall(PetscFVGetComputeGradients(fv, &compGrad));
21089566063dSJacob Faibussowitsch     PetscCall(PetscFVSetComputeGradients(fv, PETSC_TRUE));
21099566063dSJacob Faibussowitsch     PetscCall(DMPlexComputeGeometryFVM(dm, &cellGeometryFVM, &faceGeometryFVM));
21109566063dSJacob Faibussowitsch     PetscCall(DMPlexComputeGradientFVM(dm, fv, faceGeometryFVM, cellGeometryFVM, &dmGrad));
21119566063dSJacob Faibussowitsch     PetscCall(PetscFVSetComputeGradients(fv, compGrad));
21129566063dSJacob Faibussowitsch     PetscCall(VecGetArrayRead(cellGeometryFVM, (const PetscScalar **)&cgeomFVM));
2113b5a3613cSMatthew G. Knepley     /* Reconstruct and limit cell gradients */
21149566063dSJacob Faibussowitsch     PetscCall(DMPlexGetHeightStratum(dm, 1, &fStart, &fEnd));
21159566063dSJacob Faibussowitsch     PetscCall(DMGetGlobalVector(dmGrad, &grad));
21169566063dSJacob Faibussowitsch     PetscCall(DMPlexReconstructGradients_Internal(dm, fv, fStart, fEnd, faceGeometryFVM, cellGeometryFVM, locX, grad));
2117b5a3613cSMatthew G. Knepley     /* Communicate gradient values */
21189566063dSJacob Faibussowitsch     PetscCall(DMGetLocalVector(dmGrad, &locGrad));
21199566063dSJacob Faibussowitsch     PetscCall(DMGlobalToLocalBegin(dmGrad, grad, INSERT_VALUES, locGrad));
21209566063dSJacob Faibussowitsch     PetscCall(DMGlobalToLocalEnd(dmGrad, grad, INSERT_VALUES, locGrad));
21219566063dSJacob Faibussowitsch     PetscCall(DMRestoreGlobalVector(dmGrad, &grad));
2122b5a3613cSMatthew G. Knepley     /* Handle non-essential (e.g. outflow) boundary values */
21239566063dSJacob Faibussowitsch     PetscCall(DMPlexInsertBoundaryValues(dm, PETSC_FALSE, locX, 0.0, faceGeometryFVM, cellGeometryFVM, locGrad));
21249566063dSJacob Faibussowitsch     PetscCall(VecGetArrayRead(locGrad, &lgrad));
2125b5a3613cSMatthew G. Knepley   }
2126338f77d5SMatthew G. Knepley   /* Read out data from inputs */
212773d901b8SMatthew G. Knepley   for (c = cStart; c < cEnd; ++c) {
212873d901b8SMatthew G. Knepley     PetscScalar *x = NULL;
212973d901b8SMatthew G. Knepley     PetscInt     i;
213073d901b8SMatthew G. Knepley 
21319566063dSJacob Faibussowitsch     PetscCall(DMPlexVecGetClosure(dm, section, locX, c, NULL, &x));
21320f2d7e86SMatthew G. Knepley     for (i = 0; i < totDim; ++i) u[c * totDim + i] = x[i];
21339566063dSJacob Faibussowitsch     PetscCall(DMPlexVecRestoreClosure(dm, section, locX, c, NULL, &x));
213473d901b8SMatthew G. Knepley     if (dmAux) {
21359566063dSJacob Faibussowitsch       PetscCall(DMPlexVecGetClosure(dmAux, sectionAux, locA, c, NULL, &x));
21360f2d7e86SMatthew G. Knepley       for (i = 0; i < totDimAux; ++i) a[c * totDimAux + i] = x[i];
21379566063dSJacob Faibussowitsch       PetscCall(DMPlexVecRestoreClosure(dmAux, sectionAux, locA, c, NULL, &x));
213873d901b8SMatthew G. Knepley     }
213973d901b8SMatthew G. Knepley   }
2140338f77d5SMatthew G. Knepley   /* Do integration for each field */
214173d901b8SMatthew G. Knepley   for (f = 0; f < Nf; ++f) {
2142c1f031eeSMatthew G. Knepley     PetscObject  obj;
2143c1f031eeSMatthew G. Knepley     PetscClassId id;
2144c1f031eeSMatthew G. Knepley     PetscInt     numChunks, numBatches, batchSize, numBlocks, blockSize, Ne, Nr, offset;
214573d901b8SMatthew G. Knepley 
21469566063dSJacob Faibussowitsch     PetscCall(PetscDSGetDiscretization(prob, f, &obj));
21479566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetClassId(obj, &id));
2148c1f031eeSMatthew G. Knepley     if (id == PETSCFE_CLASSID) {
2149c1f031eeSMatthew G. Knepley       PetscFE         fe = (PetscFE)obj;
2150c1f031eeSMatthew G. Knepley       PetscQuadrature q;
2151c330f8ffSToby Isaac       PetscFEGeom    *chunkGeom = NULL;
2152c1f031eeSMatthew G. Knepley       PetscInt        Nq, Nb;
2153c1f031eeSMatthew G. Knepley 
21549566063dSJacob Faibussowitsch       PetscCall(PetscFEGetTileSizes(fe, NULL, &numBlocks, NULL, &numBatches));
21559566063dSJacob Faibussowitsch       PetscCall(PetscFEGetQuadrature(fe, &q));
21569566063dSJacob Faibussowitsch       PetscCall(PetscQuadratureGetData(q, NULL, NULL, &Nq, NULL, NULL));
21579566063dSJacob Faibussowitsch       PetscCall(PetscFEGetDimension(fe, &Nb));
2158c1f031eeSMatthew G. Knepley       blockSize = Nb * Nq;
215973d901b8SMatthew G. Knepley       batchSize = numBlocks * blockSize;
21609566063dSJacob Faibussowitsch       PetscCall(PetscFESetTileSizes(fe, blockSize, numBlocks, batchSize, numBatches));
216173d901b8SMatthew G. Knepley       numChunks = numCells / (numBatches * batchSize);
216273d901b8SMatthew G. Knepley       Ne        = numChunks * numBatches * batchSize;
216373d901b8SMatthew G. Knepley       Nr        = numCells % (numBatches * batchSize);
216473d901b8SMatthew G. Knepley       offset    = numCells - Nr;
216548a46eb9SPierre Jolivet       if (!affineQuad) PetscCall(DMFieldCreateFEGeom(coordField, cellIS, q, PETSC_FALSE, &cgeomFEM));
21669566063dSJacob Faibussowitsch       PetscCall(PetscFEGeomGetChunk(cgeomFEM, 0, offset, &chunkGeom));
21679566063dSJacob Faibussowitsch       PetscCall(PetscFEIntegrate(prob, f, Ne, chunkGeom, u, probAux, a, cintegral));
21689566063dSJacob Faibussowitsch       PetscCall(PetscFEGeomGetChunk(cgeomFEM, offset, numCells, &chunkGeom));
21699566063dSJacob Faibussowitsch       PetscCall(PetscFEIntegrate(prob, f, Nr, chunkGeom, &u[offset * totDim], probAux, &a[offset * totDimAux], &cintegral[offset * Nf]));
21709566063dSJacob Faibussowitsch       PetscCall(PetscFEGeomRestoreChunk(cgeomFEM, offset, numCells, &chunkGeom));
217148a46eb9SPierre Jolivet       if (!affineQuad) PetscCall(PetscFEGeomDestroy(&cgeomFEM));
2172c1f031eeSMatthew G. Knepley     } else if (id == PETSCFV_CLASSID) {
2173c1f031eeSMatthew G. Knepley       PetscInt       foff;
2174420e96edSMatthew G. Knepley       PetscPointFunc obj_func;
2175b69edc29SMatthew G. Knepley       PetscScalar    lint;
2176c1f031eeSMatthew G. Knepley 
21779566063dSJacob Faibussowitsch       PetscCall(PetscDSGetObjective(prob, f, &obj_func));
21789566063dSJacob Faibussowitsch       PetscCall(PetscDSGetFieldOffset(prob, f, &foff));
2179c1f031eeSMatthew G. Knepley       if (obj_func) {
2180c1f031eeSMatthew G. Knepley         for (c = 0; c < numCells; ++c) {
2181b5a3613cSMatthew G. Knepley           PetscScalar *u_x;
2182b5a3613cSMatthew G. Knepley 
21839566063dSJacob Faibussowitsch           PetscCall(DMPlexPointLocalRead(dmGrad, c, lgrad, &u_x));
2184338f77d5SMatthew G. Knepley           obj_func(dim, Nf, NfAux, uOff, uOff_x, &u[totDim * c + foff], NULL, u_x, aOff, NULL, &a[totDimAux * c], NULL, NULL, 0.0, cgeomFVM[c].centroid, numConstants, constants, &lint);
2185338f77d5SMatthew G. Knepley           cintegral[c * Nf + f] += PetscRealPart(lint) * cgeomFVM[c].volume;
218673d901b8SMatthew G. Knepley         }
2187c1f031eeSMatthew G. Knepley       }
218863a3b9bcSJacob Faibussowitsch     } else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, f);
2189c1f031eeSMatthew G. Knepley   }
2190338f77d5SMatthew G. Knepley   /* Cleanup data arrays */
2191b5a3613cSMatthew G. Knepley   if (useFVM) {
21929566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayRead(locGrad, &lgrad));
21939566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayRead(cellGeometryFVM, (const PetscScalar **)&cgeomFVM));
21949566063dSJacob Faibussowitsch     PetscCall(DMRestoreLocalVector(dmGrad, &locGrad));
21959566063dSJacob Faibussowitsch     PetscCall(VecDestroy(&faceGeometryFVM));
21969566063dSJacob Faibussowitsch     PetscCall(VecDestroy(&cellGeometryFVM));
21979566063dSJacob Faibussowitsch     PetscCall(DMDestroy(&dmGrad));
2198b5a3613cSMatthew G. Knepley   }
21999566063dSJacob Faibussowitsch   if (dmAux) PetscCall(PetscFree(a));
22009566063dSJacob Faibussowitsch   PetscCall(PetscFree(u));
2201338f77d5SMatthew G. Knepley   /* Cleanup */
220248a46eb9SPierre Jolivet   if (affineQuad) PetscCall(PetscFEGeomDestroy(&cgeomFEM));
22039566063dSJacob Faibussowitsch   PetscCall(PetscQuadratureDestroy(&affineQuad));
22049566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&cellIS));
22059566063dSJacob Faibussowitsch   PetscCall(DMRestoreLocalVector(dm, &locX));
22063ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2207338f77d5SMatthew G. Knepley }
2208338f77d5SMatthew G. Knepley 
2209338f77d5SMatthew G. Knepley /*@
2210338f77d5SMatthew G. Knepley   DMPlexComputeIntegralFEM - Form the integral over the domain from the global input X using pointwise functions specified by the user
2211338f77d5SMatthew G. Knepley 
2212338f77d5SMatthew G. Knepley   Input Parameters:
2213338f77d5SMatthew G. Knepley + dm   - The mesh
2214338f77d5SMatthew G. Knepley . X    - Global input vector
2215338f77d5SMatthew G. Knepley - user - The user context
2216338f77d5SMatthew G. Knepley 
2217338f77d5SMatthew G. Knepley   Output Parameter:
2218338f77d5SMatthew G. Knepley . integral - Integral for each field
2219338f77d5SMatthew G. Knepley 
2220338f77d5SMatthew G. Knepley   Level: developer
2221338f77d5SMatthew G. Knepley 
22221cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexSNESComputeResidualFEM()`
2223338f77d5SMatthew G. Knepley @*/
2224d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeIntegralFEM(DM dm, Vec X, PetscScalar *integral, void *user)
2225d71ae5a4SJacob Faibussowitsch {
2226338f77d5SMatthew G. Knepley   DM_Plex     *mesh = (DM_Plex *)dm->data;
2227b8feb594SMatthew G. Knepley   PetscScalar *cintegral, *lintegral;
2228412e9a14SMatthew G. Knepley   PetscInt     Nf, f, cellHeight, cStart, cEnd, cell;
2229338f77d5SMatthew G. Knepley 
2230338f77d5SMatthew G. Knepley   PetscFunctionBegin;
2231338f77d5SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
2232338f77d5SMatthew G. Knepley   PetscValidHeaderSpecific(X, VEC_CLASSID, 2);
22334f572ea9SToby Isaac   PetscAssertPointer(integral, 3);
22349566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(DMPLEX_IntegralFEM, dm, 0, 0, 0));
22359566063dSJacob Faibussowitsch   PetscCall(DMGetNumFields(dm, &Nf));
22369566063dSJacob Faibussowitsch   PetscCall(DMPlexGetVTKCellHeight(dm, &cellHeight));
22379566063dSJacob Faibussowitsch   PetscCall(DMPlexGetSimplexOrBoxCells(dm, cellHeight, &cStart, &cEnd));
2238338f77d5SMatthew G. Knepley   /* TODO Introduce a loop over large chunks (right now this is a single chunk) */
22399566063dSJacob Faibussowitsch   PetscCall(PetscCalloc2(Nf, &lintegral, (cEnd - cStart) * Nf, &cintegral));
22409566063dSJacob Faibussowitsch   PetscCall(DMPlexComputeIntegral_Internal(dm, X, cStart, cEnd, cintegral, user));
2241338f77d5SMatthew G. Knepley   /* Sum up values */
2242338f77d5SMatthew G. Knepley   for (cell = cStart; cell < cEnd; ++cell) {
2243338f77d5SMatthew G. Knepley     const PetscInt c = cell - cStart;
2244338f77d5SMatthew G. Knepley 
22459566063dSJacob Faibussowitsch     if (mesh->printFEM > 1) PetscCall(DMPrintCellVector(cell, "Cell Integral", Nf, &cintegral[c * Nf]));
2246b8feb594SMatthew G. Knepley     for (f = 0; f < Nf; ++f) lintegral[f] += cintegral[c * Nf + f];
2247338f77d5SMatthew G. Knepley   }
22481c2dc1cbSBarry Smith   PetscCall(MPIU_Allreduce(lintegral, integral, Nf, MPIU_SCALAR, MPIU_SUM, PetscObjectComm((PetscObject)dm)));
224973d901b8SMatthew G. Knepley   if (mesh->printFEM) {
22509566063dSJacob Faibussowitsch     PetscCall(PetscPrintf(PetscObjectComm((PetscObject)dm), "Integral:"));
22519566063dSJacob Faibussowitsch     for (f = 0; f < Nf; ++f) PetscCall(PetscPrintf(PetscObjectComm((PetscObject)dm), " %g", (double)PetscRealPart(integral[f])));
22529566063dSJacob Faibussowitsch     PetscCall(PetscPrintf(PetscObjectComm((PetscObject)dm), "\n"));
225373d901b8SMatthew G. Knepley   }
22549566063dSJacob Faibussowitsch   PetscCall(PetscFree2(lintegral, cintegral));
22559566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(DMPLEX_IntegralFEM, dm, 0, 0, 0));
22563ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2257338f77d5SMatthew G. Knepley }
2258338f77d5SMatthew G. Knepley 
2259338f77d5SMatthew G. Knepley /*@
2260338f77d5SMatthew G. Knepley   DMPlexComputeCellwiseIntegralFEM - Form the vector of cellwise integrals F from the global input X using pointwise functions specified by the user
2261338f77d5SMatthew G. Knepley 
2262338f77d5SMatthew G. Knepley   Input Parameters:
2263338f77d5SMatthew G. Knepley + dm   - The mesh
2264338f77d5SMatthew G. Knepley . X    - Global input vector
2265338f77d5SMatthew G. Knepley - user - The user context
2266338f77d5SMatthew G. Knepley 
2267338f77d5SMatthew G. Knepley   Output Parameter:
226860225df5SJacob Faibussowitsch . F - Cellwise integrals for each field
2269338f77d5SMatthew G. Knepley 
2270338f77d5SMatthew G. Knepley   Level: developer
2271338f77d5SMatthew G. Knepley 
22721cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexSNESComputeResidualFEM()`
2273338f77d5SMatthew G. Knepley @*/
2274d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeCellwiseIntegralFEM(DM dm, Vec X, Vec F, void *user)
2275d71ae5a4SJacob Faibussowitsch {
2276338f77d5SMatthew G. Knepley   DM_Plex     *mesh = (DM_Plex *)dm->data;
2277338f77d5SMatthew G. Knepley   DM           dmF;
2278338f77d5SMatthew G. Knepley   PetscSection sectionF;
2279338f77d5SMatthew G. Knepley   PetscScalar *cintegral, *af;
2280412e9a14SMatthew G. Knepley   PetscInt     Nf, f, cellHeight, cStart, cEnd, cell;
2281338f77d5SMatthew G. Knepley 
2282338f77d5SMatthew G. Knepley   PetscFunctionBegin;
2283338f77d5SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
2284338f77d5SMatthew G. Knepley   PetscValidHeaderSpecific(X, VEC_CLASSID, 2);
2285338f77d5SMatthew G. Knepley   PetscValidHeaderSpecific(F, VEC_CLASSID, 3);
22869566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(DMPLEX_IntegralFEM, dm, 0, 0, 0));
22879566063dSJacob Faibussowitsch   PetscCall(DMGetNumFields(dm, &Nf));
22889566063dSJacob Faibussowitsch   PetscCall(DMPlexGetVTKCellHeight(dm, &cellHeight));
22899566063dSJacob Faibussowitsch   PetscCall(DMPlexGetSimplexOrBoxCells(dm, cellHeight, &cStart, &cEnd));
2290338f77d5SMatthew G. Knepley   /* TODO Introduce a loop over large chunks (right now this is a single chunk) */
22919566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1((cEnd - cStart) * Nf, &cintegral));
22929566063dSJacob Faibussowitsch   PetscCall(DMPlexComputeIntegral_Internal(dm, X, cStart, cEnd, cintegral, user));
2293338f77d5SMatthew G. Knepley   /* Put values in F*/
22949566063dSJacob Faibussowitsch   PetscCall(VecGetDM(F, &dmF));
22959566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dmF, &sectionF));
22969566063dSJacob Faibussowitsch   PetscCall(VecGetArray(F, &af));
2297338f77d5SMatthew G. Knepley   for (cell = cStart; cell < cEnd; ++cell) {
2298338f77d5SMatthew G. Knepley     const PetscInt c = cell - cStart;
2299338f77d5SMatthew G. Knepley     PetscInt       dof, off;
2300338f77d5SMatthew G. Knepley 
23019566063dSJacob Faibussowitsch     if (mesh->printFEM > 1) PetscCall(DMPrintCellVector(cell, "Cell Integral", Nf, &cintegral[c * Nf]));
23029566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetDof(sectionF, cell, &dof));
23039566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetOffset(sectionF, cell, &off));
230463a3b9bcSJacob Faibussowitsch     PetscCheck(dof == Nf, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "The number of cell dofs %" PetscInt_FMT " != %" PetscInt_FMT, dof, Nf);
2305338f77d5SMatthew G. Knepley     for (f = 0; f < Nf; ++f) af[off + f] = cintegral[c * Nf + f];
2306338f77d5SMatthew G. Knepley   }
23079566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(F, &af));
23089566063dSJacob Faibussowitsch   PetscCall(PetscFree(cintegral));
23099566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(DMPLEX_IntegralFEM, dm, 0, 0, 0));
23103ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
231173d901b8SMatthew G. Knepley }
231273d901b8SMatthew G. Knepley 
2313d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexComputeBdIntegral_Internal(DM dm, Vec locX, IS pointIS, void (*func)(PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], PetscReal, const PetscReal[], const PetscReal[], PetscInt, const PetscScalar[], PetscScalar[]), PetscScalar *fintegral, void *user)
2314d71ae5a4SJacob Faibussowitsch {
23159b6f715bSMatthew G. Knepley   DM                 plex = NULL, plexA = NULL;
2316a6e0b375SMatthew G. Knepley   DMEnclosureType    encAux;
23179b6f715bSMatthew G. Knepley   PetscDS            prob, probAux       = NULL;
23189b6f715bSMatthew G. Knepley   PetscSection       section, sectionAux = NULL;
23199b6f715bSMatthew G. Knepley   Vec                locA = NULL;
23209b6f715bSMatthew G. Knepley   DMField            coordField;
23219b6f715bSMatthew G. Knepley   PetscInt           Nf, totDim, *uOff, *uOff_x;
23229b6f715bSMatthew G. Knepley   PetscInt           NfAux = 0, totDimAux = 0, *aOff = NULL;
23239b6f715bSMatthew G. Knepley   PetscScalar       *u, *a = NULL;
232464c72086SMatthew G. Knepley   const PetscScalar *constants;
23259b6f715bSMatthew G. Knepley   PetscInt           numConstants, f;
232664c72086SMatthew G. Knepley 
232764c72086SMatthew G. Knepley   PetscFunctionBegin;
23289566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateField(dm, &coordField));
23299566063dSJacob Faibussowitsch   PetscCall(DMConvert(dm, DMPLEX, &plex));
23309566063dSJacob Faibussowitsch   PetscCall(DMGetDS(dm, &prob));
23319566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dm, &section));
23329566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetNumFields(section, &Nf));
233364c72086SMatthew G. Knepley   /* Determine which discretizations we have */
23349b6f715bSMatthew G. Knepley   for (f = 0; f < Nf; ++f) {
233564c72086SMatthew G. Knepley     PetscObject  obj;
233664c72086SMatthew G. Knepley     PetscClassId id;
233764c72086SMatthew G. Knepley 
23389566063dSJacob Faibussowitsch     PetscCall(PetscDSGetDiscretization(prob, f, &obj));
23399566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetClassId(obj, &id));
234063a3b9bcSJacob Faibussowitsch     PetscCheck(id != PETSCFV_CLASSID, PetscObjectComm((PetscObject)dm), PETSC_ERR_SUP, "Not supported for FVM (field %" PetscInt_FMT ")", f);
234164c72086SMatthew G. Knepley   }
234264c72086SMatthew G. Knepley   /* Read DS information */
23439566063dSJacob Faibussowitsch   PetscCall(PetscDSGetTotalDimension(prob, &totDim));
23449566063dSJacob Faibussowitsch   PetscCall(PetscDSGetComponentOffsets(prob, &uOff));
23459566063dSJacob Faibussowitsch   PetscCall(PetscDSGetComponentDerivativeOffsets(prob, &uOff_x));
23469566063dSJacob Faibussowitsch   PetscCall(PetscDSGetConstants(prob, &numConstants, &constants));
234764c72086SMatthew G. Knepley   /* Read Auxiliary DS information */
23489566063dSJacob Faibussowitsch   PetscCall(DMGetAuxiliaryVec(dm, NULL, 0, 0, &locA));
23499b6f715bSMatthew G. Knepley   if (locA) {
23509b6f715bSMatthew G. Knepley     DM dmAux;
23519b6f715bSMatthew G. Knepley 
23529566063dSJacob Faibussowitsch     PetscCall(VecGetDM(locA, &dmAux));
23539566063dSJacob Faibussowitsch     PetscCall(DMGetEnclosureRelation(dmAux, dm, &encAux));
23549566063dSJacob Faibussowitsch     PetscCall(DMConvert(dmAux, DMPLEX, &plexA));
23559566063dSJacob Faibussowitsch     PetscCall(DMGetDS(dmAux, &probAux));
23569566063dSJacob Faibussowitsch     PetscCall(PetscDSGetNumFields(probAux, &NfAux));
23579566063dSJacob Faibussowitsch     PetscCall(DMGetLocalSection(dmAux, &sectionAux));
23589566063dSJacob Faibussowitsch     PetscCall(PetscDSGetTotalDimension(probAux, &totDimAux));
23599566063dSJacob Faibussowitsch     PetscCall(PetscDSGetComponentOffsets(probAux, &aOff));
236064c72086SMatthew G. Knepley   }
23619b6f715bSMatthew G. Knepley   /* Integrate over points */
23629b6f715bSMatthew G. Knepley   {
23639b6f715bSMatthew G. Knepley     PetscFEGeom    *fgeom, *chunkGeom = NULL;
2364b7260050SToby Isaac     PetscInt        maxDegree;
23659b6f715bSMatthew G. Knepley     PetscQuadrature qGeom = NULL;
23669b6f715bSMatthew G. Knepley     const PetscInt *points;
23679b6f715bSMatthew G. Knepley     PetscInt        numFaces, face, Nq, field;
23689b6f715bSMatthew G. Knepley     PetscInt        numChunks, chunkSize, chunk, Nr, offset;
236964c72086SMatthew G. Knepley 
23709566063dSJacob Faibussowitsch     PetscCall(ISGetLocalSize(pointIS, &numFaces));
23719566063dSJacob Faibussowitsch     PetscCall(ISGetIndices(pointIS, &points));
23729566063dSJacob Faibussowitsch     PetscCall(PetscCalloc2(numFaces * totDim, &u, locA ? numFaces * totDimAux : 0, &a));
23739566063dSJacob Faibussowitsch     PetscCall(DMFieldGetDegree(coordField, pointIS, NULL, &maxDegree));
237464c72086SMatthew G. Knepley     for (field = 0; field < Nf; ++field) {
237564c72086SMatthew G. Knepley       PetscFE fe;
237664c72086SMatthew G. Knepley 
23779566063dSJacob Faibussowitsch       PetscCall(PetscDSGetDiscretization(prob, field, (PetscObject *)&fe));
23789566063dSJacob Faibussowitsch       if (maxDegree <= 1) PetscCall(DMFieldCreateDefaultQuadrature(coordField, pointIS, &qGeom));
23799b6f715bSMatthew G. Knepley       if (!qGeom) {
23809566063dSJacob Faibussowitsch         PetscCall(PetscFEGetFaceQuadrature(fe, &qGeom));
23819566063dSJacob Faibussowitsch         PetscCall(PetscObjectReference((PetscObject)qGeom));
23829b6f715bSMatthew G. Knepley       }
23839566063dSJacob Faibussowitsch       PetscCall(PetscQuadratureGetData(qGeom, NULL, NULL, &Nq, NULL, NULL));
23849566063dSJacob Faibussowitsch       PetscCall(DMPlexGetFEGeom(coordField, pointIS, qGeom, PETSC_TRUE, &fgeom));
23859b6f715bSMatthew G. Knepley       for (face = 0; face < numFaces; ++face) {
2386f15274beSMatthew Knepley         const PetscInt point = points[face], *support;
23879b6f715bSMatthew G. Knepley         PetscScalar   *x     = NULL;
2388f15274beSMatthew Knepley         PetscInt       i;
23899b6f715bSMatthew G. Knepley 
23909566063dSJacob Faibussowitsch         PetscCall(DMPlexGetSupport(dm, point, &support));
23919566063dSJacob Faibussowitsch         PetscCall(DMPlexVecGetClosure(plex, section, locX, support[0], NULL, &x));
23929b6f715bSMatthew G. Knepley         for (i = 0; i < totDim; ++i) u[face * totDim + i] = x[i];
23939566063dSJacob Faibussowitsch         PetscCall(DMPlexVecRestoreClosure(plex, section, locX, support[0], NULL, &x));
23949b6f715bSMatthew G. Knepley         if (locA) {
23959b6f715bSMatthew G. Knepley           PetscInt subp;
23969566063dSJacob Faibussowitsch           PetscCall(DMGetEnclosurePoint(plexA, dm, encAux, support[0], &subp));
23979566063dSJacob Faibussowitsch           PetscCall(DMPlexVecGetClosure(plexA, sectionAux, locA, subp, NULL, &x));
23989b6f715bSMatthew G. Knepley           for (i = 0; i < totDimAux; ++i) a[f * totDimAux + i] = x[i];
23999566063dSJacob Faibussowitsch           PetscCall(DMPlexVecRestoreClosure(plexA, sectionAux, locA, subp, NULL, &x));
24009b6f715bSMatthew G. Knepley         }
24019b6f715bSMatthew G. Knepley       }
24029b6f715bSMatthew G. Knepley       /* Get blocking */
24039b6f715bSMatthew G. Knepley       {
24049b6f715bSMatthew G. Knepley         PetscQuadrature q;
24059b6f715bSMatthew G. Knepley         PetscInt        numBatches, batchSize, numBlocks, blockSize;
24069b6f715bSMatthew G. Knepley         PetscInt        Nq, Nb;
24079b6f715bSMatthew G. Knepley 
24089566063dSJacob Faibussowitsch         PetscCall(PetscFEGetTileSizes(fe, NULL, &numBlocks, NULL, &numBatches));
24099566063dSJacob Faibussowitsch         PetscCall(PetscFEGetQuadrature(fe, &q));
24109566063dSJacob Faibussowitsch         PetscCall(PetscQuadratureGetData(q, NULL, NULL, &Nq, NULL, NULL));
24119566063dSJacob Faibussowitsch         PetscCall(PetscFEGetDimension(fe, &Nb));
241264c72086SMatthew G. Knepley         blockSize = Nb * Nq;
241364c72086SMatthew G. Knepley         batchSize = numBlocks * blockSize;
24149b6f715bSMatthew G. Knepley         chunkSize = numBatches * batchSize;
24159566063dSJacob Faibussowitsch         PetscCall(PetscFESetTileSizes(fe, blockSize, numBlocks, batchSize, numBatches));
24169b6f715bSMatthew G. Knepley         numChunks = numFaces / chunkSize;
24179b6f715bSMatthew G. Knepley         Nr        = numFaces % chunkSize;
241864c72086SMatthew G. Knepley         offset    = numFaces - Nr;
241964c72086SMatthew G. Knepley       }
24209b6f715bSMatthew G. Knepley       /* Do integration for each field */
24219b6f715bSMatthew G. Knepley       for (chunk = 0; chunk < numChunks; ++chunk) {
24229566063dSJacob Faibussowitsch         PetscCall(PetscFEGeomGetChunk(fgeom, chunk * chunkSize, (chunk + 1) * chunkSize, &chunkGeom));
24239566063dSJacob Faibussowitsch         PetscCall(PetscFEIntegrateBd(prob, field, func, chunkSize, chunkGeom, u, probAux, a, fintegral));
24249566063dSJacob Faibussowitsch         PetscCall(PetscFEGeomRestoreChunk(fgeom, 0, offset, &chunkGeom));
242564c72086SMatthew G. Knepley       }
24269566063dSJacob Faibussowitsch       PetscCall(PetscFEGeomGetChunk(fgeom, offset, numFaces, &chunkGeom));
24279566063dSJacob Faibussowitsch       PetscCall(PetscFEIntegrateBd(prob, field, func, Nr, chunkGeom, &u[offset * totDim], probAux, a ? &a[offset * totDimAux] : NULL, &fintegral[offset * Nf]));
24289566063dSJacob Faibussowitsch       PetscCall(PetscFEGeomRestoreChunk(fgeom, offset, numFaces, &chunkGeom));
242964c72086SMatthew G. Knepley       /* Cleanup data arrays */
24309566063dSJacob Faibussowitsch       PetscCall(DMPlexRestoreFEGeom(coordField, pointIS, qGeom, PETSC_TRUE, &fgeom));
24319566063dSJacob Faibussowitsch       PetscCall(PetscQuadratureDestroy(&qGeom));
24329566063dSJacob Faibussowitsch       PetscCall(PetscFree2(u, a));
24339566063dSJacob Faibussowitsch       PetscCall(ISRestoreIndices(pointIS, &points));
243464c72086SMatthew G. Knepley     }
243564c72086SMatthew G. Knepley   }
24369566063dSJacob Faibussowitsch   if (plex) PetscCall(DMDestroy(&plex));
24379566063dSJacob Faibussowitsch   if (plexA) PetscCall(DMDestroy(&plexA));
24383ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
24399b6f715bSMatthew G. Knepley }
24409b6f715bSMatthew G. Knepley 
244160225df5SJacob Faibussowitsch /*@C
24429b6f715bSMatthew G. Knepley   DMPlexComputeBdIntegral - Form the integral over the specified boundary from the global input X using pointwise functions specified by the user
24439b6f715bSMatthew G. Knepley 
24449b6f715bSMatthew G. Knepley   Input Parameters:
24459b6f715bSMatthew G. Knepley + dm      - The mesh
24469b6f715bSMatthew G. Knepley . X       - Global input vector
2447a1cb98faSBarry Smith . label   - The boundary `DMLabel`
2448a1cb98faSBarry Smith . numVals - The number of label values to use, or `PETSC_DETERMINE` for all values
2449a1cb98faSBarry Smith . vals    - The label values to use, or NULL for all values
245067b8a455SSatish Balay . func    - The function to integrate along the boundary
24519b6f715bSMatthew G. Knepley - user    - The user context
24529b6f715bSMatthew G. Knepley 
24539b6f715bSMatthew G. Knepley   Output Parameter:
24549b6f715bSMatthew G. Knepley . integral - Integral for each field
24559b6f715bSMatthew G. Knepley 
24569b6f715bSMatthew G. Knepley   Level: developer
24579b6f715bSMatthew G. Knepley 
24581cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexComputeIntegralFEM()`, `DMPlexComputeBdResidualFEM()`
24599b6f715bSMatthew G. Knepley @*/
2460d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeBdIntegral(DM dm, Vec X, DMLabel label, PetscInt numVals, const PetscInt vals[], void (*func)(PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], PetscReal, const PetscReal[], const PetscReal[], PetscInt, const PetscScalar[], PetscScalar[]), PetscScalar *integral, void *user)
2461d71ae5a4SJacob Faibussowitsch {
24629b6f715bSMatthew G. Knepley   Vec          locX;
24639b6f715bSMatthew G. Knepley   PetscSection section;
24649b6f715bSMatthew G. Knepley   DMLabel      depthLabel;
24659b6f715bSMatthew G. Knepley   IS           facetIS;
24669b6f715bSMatthew G. Knepley   PetscInt     dim, Nf, f, v;
24679b6f715bSMatthew G. Knepley 
24689b6f715bSMatthew G. Knepley   PetscFunctionBegin;
24699b6f715bSMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
24709b6f715bSMatthew G. Knepley   PetscValidHeaderSpecific(X, VEC_CLASSID, 2);
2471292bffcbSToby Isaac   PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 3);
24724f572ea9SToby Isaac   if (vals) PetscAssertPointer(vals, 5);
24734f572ea9SToby Isaac   PetscAssertPointer(integral, 7);
24749566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(DMPLEX_IntegralFEM, dm, 0, 0, 0));
24759566063dSJacob Faibussowitsch   PetscCall(DMPlexGetDepthLabel(dm, &depthLabel));
24769566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dm, &dim));
24779566063dSJacob Faibussowitsch   PetscCall(DMLabelGetStratumIS(depthLabel, dim - 1, &facetIS));
24789566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dm, &section));
24799566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetNumFields(section, &Nf));
24809b6f715bSMatthew G. Knepley   /* Get local solution with boundary values */
24819566063dSJacob Faibussowitsch   PetscCall(DMGetLocalVector(dm, &locX));
24829566063dSJacob Faibussowitsch   PetscCall(DMPlexInsertBoundaryValues(dm, PETSC_TRUE, locX, 0.0, NULL, NULL, NULL));
24839566063dSJacob Faibussowitsch   PetscCall(DMGlobalToLocalBegin(dm, X, INSERT_VALUES, locX));
24849566063dSJacob Faibussowitsch   PetscCall(DMGlobalToLocalEnd(dm, X, INSERT_VALUES, locX));
24859b6f715bSMatthew G. Knepley   /* Loop over label values */
24869566063dSJacob Faibussowitsch   PetscCall(PetscArrayzero(integral, Nf));
24879b6f715bSMatthew G. Knepley   for (v = 0; v < numVals; ++v) {
24889b6f715bSMatthew G. Knepley     IS           pointIS;
24899b6f715bSMatthew G. Knepley     PetscInt     numFaces, face;
24909b6f715bSMatthew G. Knepley     PetscScalar *fintegral;
24919b6f715bSMatthew G. Knepley 
24929566063dSJacob Faibussowitsch     PetscCall(DMLabelGetStratumIS(label, vals[v], &pointIS));
24939b6f715bSMatthew G. Knepley     if (!pointIS) continue; /* No points with that id on this process */
24949b6f715bSMatthew G. Knepley     {
24959b6f715bSMatthew G. Knepley       IS isectIS;
24969b6f715bSMatthew G. Knepley 
24979b6f715bSMatthew G. Knepley       /* TODO: Special cases of ISIntersect where it is quick to check a priori if one is a superset of the other */
24989566063dSJacob Faibussowitsch       PetscCall(ISIntersect_Caching_Internal(facetIS, pointIS, &isectIS));
24999566063dSJacob Faibussowitsch       PetscCall(ISDestroy(&pointIS));
25009b6f715bSMatthew G. Knepley       pointIS = isectIS;
25019b6f715bSMatthew G. Knepley     }
25029566063dSJacob Faibussowitsch     PetscCall(ISGetLocalSize(pointIS, &numFaces));
25039566063dSJacob Faibussowitsch     PetscCall(PetscCalloc1(numFaces * Nf, &fintegral));
25049566063dSJacob Faibussowitsch     PetscCall(DMPlexComputeBdIntegral_Internal(dm, locX, pointIS, func, fintegral, user));
25059b6f715bSMatthew G. Knepley     /* Sum point contributions into integral */
25069371c9d4SSatish Balay     for (f = 0; f < Nf; ++f)
25079371c9d4SSatish Balay       for (face = 0; face < numFaces; ++face) integral[f] += fintegral[face * Nf + f];
25089566063dSJacob Faibussowitsch     PetscCall(PetscFree(fintegral));
25099566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&pointIS));
25109b6f715bSMatthew G. Knepley   }
25119566063dSJacob Faibussowitsch   PetscCall(DMRestoreLocalVector(dm, &locX));
25129566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&facetIS));
25139566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(DMPLEX_IntegralFEM, dm, 0, 0, 0));
25143ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
251564c72086SMatthew G. Knepley }
251664c72086SMatthew G. Knepley 
2517d69c5d34SMatthew G. Knepley /*@
2518a1cb98faSBarry Smith   DMPlexComputeInterpolatorNested - Form the local portion of the interpolation matrix I from the coarse `DM` to a uniformly refined `DM`.
2519d69c5d34SMatthew G. Knepley 
2520d69c5d34SMatthew G. Knepley   Input Parameters:
2521cf51de39SMatthew G. Knepley + dmc       - The coarse mesh
2522cf51de39SMatthew G. Knepley . dmf       - The fine mesh
2523cf51de39SMatthew G. Knepley . isRefined - Flag indicating regular refinement, rather than the same topology
2524d69c5d34SMatthew G. Knepley - user      - The user context
2525d69c5d34SMatthew G. Knepley 
2526d69c5d34SMatthew G. Knepley   Output Parameter:
2527934789fcSMatthew G. Knepley . In - The interpolation matrix
2528d69c5d34SMatthew G. Knepley 
2529d69c5d34SMatthew G. Knepley   Level: developer
2530d69c5d34SMatthew G. Knepley 
25311cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexComputeInterpolatorGeneral()`, `DMPlexComputeJacobianFEM()`
2532d69c5d34SMatthew G. Knepley @*/
2533d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeInterpolatorNested(DM dmc, DM dmf, PetscBool isRefined, Mat In, void *user)
2534d71ae5a4SJacob Faibussowitsch {
2535d69c5d34SMatthew G. Knepley   DM_Plex     *mesh = (DM_Plex *)dmc->data;
2536d69c5d34SMatthew G. Knepley   const char  *name = "Interpolator";
2537d69c5d34SMatthew G. Knepley   PetscFE     *feRef;
253897c42addSMatthew G. Knepley   PetscFV     *fvRef;
2539d69c5d34SMatthew G. Knepley   PetscSection fsection, fglobalSection;
2540d69c5d34SMatthew G. Knepley   PetscSection csection, cglobalSection;
2541d69c5d34SMatthew G. Knepley   PetscScalar *elemMat;
2542485ad865SMatthew G. Knepley   PetscInt     dim, Nf, f, fieldI, fieldJ, offsetI, offsetJ, cStart, cEnd, c;
25432ea9c922SToby Isaac   PetscInt     cTotDim = 0, rTotDim = 0;
2544d69c5d34SMatthew G. Knepley 
2545d69c5d34SMatthew G. Knepley   PetscFunctionBegin;
25469566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(DMPLEX_InterpolatorFEM, dmc, dmf, 0, 0));
25479566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dmf, &dim));
25489566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dmf, &fsection));
25499566063dSJacob Faibussowitsch   PetscCall(DMGetGlobalSection(dmf, &fglobalSection));
25509566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dmc, &csection));
25519566063dSJacob Faibussowitsch   PetscCall(DMGetGlobalSection(dmc, &cglobalSection));
25529566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetNumFields(fsection, &Nf));
25539566063dSJacob Faibussowitsch   PetscCall(DMPlexGetSimplexOrBoxCells(dmc, 0, &cStart, &cEnd));
25549566063dSJacob Faibussowitsch   PetscCall(PetscCalloc2(Nf, &feRef, Nf, &fvRef));
2555d69c5d34SMatthew G. Knepley   for (f = 0; f < Nf; ++f) {
25562ea9c922SToby Isaac     PetscObject  obj, objc;
25572ea9c922SToby Isaac     PetscClassId id, idc;
25582ea9c922SToby Isaac     PetscInt     rNb = 0, Nc = 0, cNb = 0;
2559d69c5d34SMatthew G. Knepley 
25609566063dSJacob Faibussowitsch     PetscCall(DMGetField(dmf, f, NULL, &obj));
25619566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetClassId(obj, &id));
256297c42addSMatthew G. Knepley     if (id == PETSCFE_CLASSID) {
256397c42addSMatthew G. Knepley       PetscFE fe = (PetscFE)obj;
256497c42addSMatthew G. Knepley 
2565cf51de39SMatthew G. Knepley       if (isRefined) {
25669566063dSJacob Faibussowitsch         PetscCall(PetscFERefine(fe, &feRef[f]));
2567cf51de39SMatthew G. Knepley       } else {
25689566063dSJacob Faibussowitsch         PetscCall(PetscObjectReference((PetscObject)fe));
2569cf51de39SMatthew G. Knepley         feRef[f] = fe;
2570cf51de39SMatthew G. Knepley       }
25719566063dSJacob Faibussowitsch       PetscCall(PetscFEGetDimension(feRef[f], &rNb));
25729566063dSJacob Faibussowitsch       PetscCall(PetscFEGetNumComponents(fe, &Nc));
257397c42addSMatthew G. Knepley     } else if (id == PETSCFV_CLASSID) {
257497c42addSMatthew G. Knepley       PetscFV        fv = (PetscFV)obj;
257597c42addSMatthew G. Knepley       PetscDualSpace Q;
257697c42addSMatthew G. Knepley 
2577cf51de39SMatthew G. Knepley       if (isRefined) {
25789566063dSJacob Faibussowitsch         PetscCall(PetscFVRefine(fv, &fvRef[f]));
2579cf51de39SMatthew G. Knepley       } else {
25809566063dSJacob Faibussowitsch         PetscCall(PetscObjectReference((PetscObject)fv));
2581cf51de39SMatthew G. Knepley         fvRef[f] = fv;
2582cf51de39SMatthew G. Knepley       }
25839566063dSJacob Faibussowitsch       PetscCall(PetscFVGetDualSpace(fvRef[f], &Q));
25849566063dSJacob Faibussowitsch       PetscCall(PetscDualSpaceGetDimension(Q, &rNb));
25859566063dSJacob Faibussowitsch       PetscCall(PetscFVGetDualSpace(fv, &Q));
25869566063dSJacob Faibussowitsch       PetscCall(PetscFVGetNumComponents(fv, &Nc));
258797c42addSMatthew G. Knepley     }
25889566063dSJacob Faibussowitsch     PetscCall(DMGetField(dmc, f, NULL, &objc));
25899566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetClassId(objc, &idc));
25902ea9c922SToby Isaac     if (idc == PETSCFE_CLASSID) {
25912ea9c922SToby Isaac       PetscFE fe = (PetscFE)objc;
25922ea9c922SToby Isaac 
25939566063dSJacob Faibussowitsch       PetscCall(PetscFEGetDimension(fe, &cNb));
25942ea9c922SToby Isaac     } else if (id == PETSCFV_CLASSID) {
25952ea9c922SToby Isaac       PetscFV        fv = (PetscFV)obj;
25962ea9c922SToby Isaac       PetscDualSpace Q;
25972ea9c922SToby Isaac 
25989566063dSJacob Faibussowitsch       PetscCall(PetscFVGetDualSpace(fv, &Q));
25999566063dSJacob Faibussowitsch       PetscCall(PetscDualSpaceGetDimension(Q, &cNb));
2600d69c5d34SMatthew G. Knepley     }
26012ea9c922SToby Isaac     rTotDim += rNb;
26022ea9c922SToby Isaac     cTotDim += cNb;
26032ea9c922SToby Isaac   }
26049566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(rTotDim * cTotDim, &elemMat));
26059566063dSJacob Faibussowitsch   PetscCall(PetscArrayzero(elemMat, rTotDim * cTotDim));
2606d69c5d34SMatthew G. Knepley   for (fieldI = 0, offsetI = 0; fieldI < Nf; ++fieldI) {
2607d69c5d34SMatthew G. Knepley     PetscDualSpace   Qref;
2608d69c5d34SMatthew G. Knepley     PetscQuadrature  f;
2609d69c5d34SMatthew G. Knepley     const PetscReal *qpoints, *qweights;
2610d69c5d34SMatthew G. Knepley     PetscReal       *points;
2611d69c5d34SMatthew G. Knepley     PetscInt         npoints = 0, Nc, Np, fpdim, i, k, p, d;
2612d69c5d34SMatthew G. Knepley 
2613d69c5d34SMatthew G. Knepley     /* Compose points from all dual basis functionals */
261497c42addSMatthew G. Knepley     if (feRef[fieldI]) {
26159566063dSJacob Faibussowitsch       PetscCall(PetscFEGetDualSpace(feRef[fieldI], &Qref));
26169566063dSJacob Faibussowitsch       PetscCall(PetscFEGetNumComponents(feRef[fieldI], &Nc));
261797c42addSMatthew G. Knepley     } else {
26189566063dSJacob Faibussowitsch       PetscCall(PetscFVGetDualSpace(fvRef[fieldI], &Qref));
26199566063dSJacob Faibussowitsch       PetscCall(PetscFVGetNumComponents(fvRef[fieldI], &Nc));
262097c42addSMatthew G. Knepley     }
26219566063dSJacob Faibussowitsch     PetscCall(PetscDualSpaceGetDimension(Qref, &fpdim));
2622d69c5d34SMatthew G. Knepley     for (i = 0; i < fpdim; ++i) {
26239566063dSJacob Faibussowitsch       PetscCall(PetscDualSpaceGetFunctional(Qref, i, &f));
26249566063dSJacob Faibussowitsch       PetscCall(PetscQuadratureGetData(f, NULL, NULL, &Np, NULL, NULL));
2625d69c5d34SMatthew G. Knepley       npoints += Np;
2626d69c5d34SMatthew G. Knepley     }
26279566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(npoints * dim, &points));
2628d69c5d34SMatthew G. Knepley     for (i = 0, k = 0; i < fpdim; ++i) {
26299566063dSJacob Faibussowitsch       PetscCall(PetscDualSpaceGetFunctional(Qref, i, &f));
26309566063dSJacob Faibussowitsch       PetscCall(PetscQuadratureGetData(f, NULL, NULL, &Np, &qpoints, NULL));
26319371c9d4SSatish Balay       for (p = 0; p < Np; ++p, ++k)
26329371c9d4SSatish Balay         for (d = 0; d < dim; ++d) points[k * dim + d] = qpoints[p * dim + d];
2633d69c5d34SMatthew G. Knepley     }
2634d69c5d34SMatthew G. Knepley 
2635d69c5d34SMatthew G. Knepley     for (fieldJ = 0, offsetJ = 0; fieldJ < Nf; ++fieldJ) {
263697c42addSMatthew G. Knepley       PetscObject  obj;
263797c42addSMatthew G. Knepley       PetscClassId id;
26389c3cf19fSMatthew G. Knepley       PetscInt     NcJ = 0, cpdim = 0, j, qNc;
2639d69c5d34SMatthew G. Knepley 
26409566063dSJacob Faibussowitsch       PetscCall(DMGetField(dmc, fieldJ, NULL, &obj));
26419566063dSJacob Faibussowitsch       PetscCall(PetscObjectGetClassId(obj, &id));
264297c42addSMatthew G. Knepley       if (id == PETSCFE_CLASSID) {
264397c42addSMatthew G. Knepley         PetscFE         fe = (PetscFE)obj;
2644ef0bb6c7SMatthew G. Knepley         PetscTabulation T  = NULL;
2645d69c5d34SMatthew G. Knepley 
2646d69c5d34SMatthew G. Knepley         /* Evaluate basis at points */
26479566063dSJacob Faibussowitsch         PetscCall(PetscFEGetNumComponents(fe, &NcJ));
26489566063dSJacob Faibussowitsch         PetscCall(PetscFEGetDimension(fe, &cpdim));
2649ffe73a53SMatthew G. Knepley         /* For now, fields only interpolate themselves */
2650ffe73a53SMatthew G. Knepley         if (fieldI == fieldJ) {
265163a3b9bcSJacob Faibussowitsch           PetscCheck(Nc == NcJ, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of components in fine space field %" PetscInt_FMT " does not match coarse field %" PetscInt_FMT, Nc, NcJ);
26529566063dSJacob Faibussowitsch           PetscCall(PetscFECreateTabulation(fe, 1, npoints, points, 0, &T));
2653d69c5d34SMatthew G. Knepley           for (i = 0, k = 0; i < fpdim; ++i) {
26549566063dSJacob Faibussowitsch             PetscCall(PetscDualSpaceGetFunctional(Qref, i, &f));
26559566063dSJacob Faibussowitsch             PetscCall(PetscQuadratureGetData(f, NULL, &qNc, &Np, NULL, &qweights));
265663a3b9bcSJacob Faibussowitsch             PetscCheck(qNc == NcJ, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of components in quadrature %" PetscInt_FMT " does not match coarse field %" PetscInt_FMT, qNc, NcJ);
2657d69c5d34SMatthew G. Knepley             for (p = 0; p < Np; ++p, ++k) {
265836a6d9c0SMatthew G. Knepley               for (j = 0; j < cpdim; ++j) {
2659d172c84bSMatthew G. Knepley                 /*
2660d172c84bSMatthew G. Knepley                    cTotDim:            Total columns in element interpolation matrix, sum of number of dual basis functionals in each field
2661d172c84bSMatthew G. Knepley                    offsetI, offsetJ:   Offsets into the larger element interpolation matrix for different fields
2662d172c84bSMatthew G. Knepley                    fpdim, i, cpdim, j: Dofs for fine and coarse grids, correspond to dual space basis functionals
2663d172c84bSMatthew G. Knepley                    qNC, Nc, Ncj, c:    Number of components in this field
2664d172c84bSMatthew G. Knepley                    Np, p:              Number of quad points in the fine grid functional i
2665d172c84bSMatthew G. Knepley                    k:                  i*Np + p, overall point number for the interpolation
2666d172c84bSMatthew G. Knepley                 */
2667ef0bb6c7SMatthew G. Knepley                 for (c = 0; c < Nc; ++c) elemMat[(offsetI + i) * cTotDim + offsetJ + j] += T->T[0][k * cpdim * NcJ + j * Nc + c] * qweights[p * qNc + c];
266836a6d9c0SMatthew G. Knepley               }
2669d69c5d34SMatthew G. Knepley             }
2670d69c5d34SMatthew G. Knepley           }
26719566063dSJacob Faibussowitsch           PetscCall(PetscTabulationDestroy(&T));
2672ffe73a53SMatthew G. Knepley         }
267397c42addSMatthew G. Knepley       } else if (id == PETSCFV_CLASSID) {
267497c42addSMatthew G. Knepley         PetscFV fv = (PetscFV)obj;
267597c42addSMatthew G. Knepley 
267697c42addSMatthew G. Knepley         /* Evaluate constant function at points */
26779566063dSJacob Faibussowitsch         PetscCall(PetscFVGetNumComponents(fv, &NcJ));
267897c42addSMatthew G. Knepley         cpdim = 1;
267997c42addSMatthew G. Knepley         /* For now, fields only interpolate themselves */
268097c42addSMatthew G. Knepley         if (fieldI == fieldJ) {
268163a3b9bcSJacob Faibussowitsch           PetscCheck(Nc == NcJ, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of components in fine space field %" PetscInt_FMT " does not match coarse field %" PetscInt_FMT, Nc, NcJ);
268297c42addSMatthew G. Knepley           for (i = 0, k = 0; i < fpdim; ++i) {
26839566063dSJacob Faibussowitsch             PetscCall(PetscDualSpaceGetFunctional(Qref, i, &f));
26849566063dSJacob Faibussowitsch             PetscCall(PetscQuadratureGetData(f, NULL, &qNc, &Np, NULL, &qweights));
268563a3b9bcSJacob Faibussowitsch             PetscCheck(qNc == NcJ, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of components in quadrature %" PetscInt_FMT " does not match coarse field %" PetscInt_FMT, qNc, NcJ);
268697c42addSMatthew G. Knepley             for (p = 0; p < Np; ++p, ++k) {
268797c42addSMatthew G. Knepley               for (j = 0; j < cpdim; ++j) {
2688458eb97cSMatthew G. Knepley                 for (c = 0; c < Nc; ++c) elemMat[(offsetI + i) * cTotDim + offsetJ + j] += 1.0 * qweights[p * qNc + c];
268997c42addSMatthew G. Knepley               }
269097c42addSMatthew G. Knepley             }
269197c42addSMatthew G. Knepley           }
269297c42addSMatthew G. Knepley         }
269397c42addSMatthew G. Knepley       }
2694d172c84bSMatthew G. Knepley       offsetJ += cpdim;
2695d69c5d34SMatthew G. Knepley     }
2696d172c84bSMatthew G. Knepley     offsetI += fpdim;
26979566063dSJacob Faibussowitsch     PetscCall(PetscFree(points));
2698d69c5d34SMatthew G. Knepley   }
26999566063dSJacob Faibussowitsch   if (mesh->printFEM > 1) PetscCall(DMPrintCellMatrix(0, name, rTotDim, cTotDim, elemMat));
27007f5b169aSMatthew G. Knepley   /* Preallocate matrix */
27017f5b169aSMatthew G. Knepley   {
2702c094ef40SMatthew G. Knepley     Mat          preallocator;
2703c094ef40SMatthew G. Knepley     PetscScalar *vals;
2704c094ef40SMatthew G. Knepley     PetscInt    *cellCIndices, *cellFIndices;
2705c094ef40SMatthew G. Knepley     PetscInt     locRows, locCols, cell;
27067f5b169aSMatthew G. Knepley 
27079566063dSJacob Faibussowitsch     PetscCall(MatGetLocalSize(In, &locRows, &locCols));
27089566063dSJacob Faibussowitsch     PetscCall(MatCreate(PetscObjectComm((PetscObject)In), &preallocator));
27099566063dSJacob Faibussowitsch     PetscCall(MatSetType(preallocator, MATPREALLOCATOR));
27109566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(preallocator, locRows, locCols, PETSC_DETERMINE, PETSC_DETERMINE));
27119566063dSJacob Faibussowitsch     PetscCall(MatSetUp(preallocator));
27129566063dSJacob Faibussowitsch     PetscCall(PetscCalloc3(rTotDim * cTotDim, &vals, cTotDim, &cellCIndices, rTotDim, &cellFIndices));
27137f5b169aSMatthew G. Knepley     for (cell = cStart; cell < cEnd; ++cell) {
2714cf51de39SMatthew G. Knepley       if (isRefined) {
27159566063dSJacob Faibussowitsch         PetscCall(DMPlexMatGetClosureIndicesRefined(dmf, fsection, fglobalSection, dmc, csection, cglobalSection, cell, cellCIndices, cellFIndices));
27169566063dSJacob Faibussowitsch         PetscCall(MatSetValues(preallocator, rTotDim, cellFIndices, cTotDim, cellCIndices, vals, INSERT_VALUES));
2717cf51de39SMatthew G. Knepley       } else {
27189566063dSJacob Faibussowitsch         PetscCall(DMPlexMatSetClosureGeneral(dmf, fsection, fglobalSection, dmc, csection, cglobalSection, preallocator, cell, vals, INSERT_VALUES));
2719cf51de39SMatthew G. Knepley       }
27207f5b169aSMatthew G. Knepley     }
27219566063dSJacob Faibussowitsch     PetscCall(PetscFree3(vals, cellCIndices, cellFIndices));
27229566063dSJacob Faibussowitsch     PetscCall(MatAssemblyBegin(preallocator, MAT_FINAL_ASSEMBLY));
27239566063dSJacob Faibussowitsch     PetscCall(MatAssemblyEnd(preallocator, MAT_FINAL_ASSEMBLY));
27249566063dSJacob Faibussowitsch     PetscCall(MatPreallocatorPreallocate(preallocator, PETSC_TRUE, In));
27259566063dSJacob Faibussowitsch     PetscCall(MatDestroy(&preallocator));
27267f5b169aSMatthew G. Knepley   }
27277f5b169aSMatthew G. Knepley   /* Fill matrix */
27289566063dSJacob Faibussowitsch   PetscCall(MatZeroEntries(In));
2729d69c5d34SMatthew G. Knepley   for (c = cStart; c < cEnd; ++c) {
2730cf51de39SMatthew G. Knepley     if (isRefined) {
27319566063dSJacob Faibussowitsch       PetscCall(DMPlexMatSetClosureRefined(dmf, fsection, fglobalSection, dmc, csection, cglobalSection, In, c, elemMat, INSERT_VALUES));
2732cf51de39SMatthew G. Knepley     } else {
27339566063dSJacob Faibussowitsch       PetscCall(DMPlexMatSetClosureGeneral(dmf, fsection, fglobalSection, dmc, csection, cglobalSection, In, c, elemMat, INSERT_VALUES));
2734cf51de39SMatthew G. Knepley     }
2735d69c5d34SMatthew G. Knepley   }
27369566063dSJacob Faibussowitsch   for (f = 0; f < Nf; ++f) PetscCall(PetscFEDestroy(&feRef[f]));
27379566063dSJacob Faibussowitsch   PetscCall(PetscFree2(feRef, fvRef));
27389566063dSJacob Faibussowitsch   PetscCall(PetscFree(elemMat));
27399566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(In, MAT_FINAL_ASSEMBLY));
27409566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(In, MAT_FINAL_ASSEMBLY));
27419318fe57SMatthew G. Knepley   if (mesh->printFEM > 1) {
27429566063dSJacob Faibussowitsch     PetscCall(PetscPrintf(PetscObjectComm((PetscObject)In), "%s:\n", name));
27432ce66baaSPierre Jolivet     PetscCall(MatFilter(In, 1.0e-10, PETSC_FALSE, PETSC_FALSE));
27449566063dSJacob Faibussowitsch     PetscCall(MatView(In, NULL));
2745d69c5d34SMatthew G. Knepley   }
27469566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(DMPLEX_InterpolatorFEM, dmc, dmf, 0, 0));
27473ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2748d69c5d34SMatthew G. Knepley }
27496c73c22cSMatthew G. Knepley 
2750d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeMassMatrixNested(DM dmc, DM dmf, Mat mass, void *user)
2751d71ae5a4SJacob Faibussowitsch {
2752bd041c0cSMatthew G. Knepley   SETERRQ(PetscObjectComm((PetscObject)dmc), PETSC_ERR_SUP, "Laziness");
2753bd041c0cSMatthew G. Knepley }
2754bd041c0cSMatthew G. Knepley 
275568132eb9SMatthew G. Knepley /*@
2756a1cb98faSBarry Smith   DMPlexComputeInterpolatorGeneral - Form the local portion of the interpolation matrix I from the coarse `DM` to a non-nested fine `DM`.
275768132eb9SMatthew G. Knepley 
275868132eb9SMatthew G. Knepley   Input Parameters:
275968132eb9SMatthew G. Knepley + dmf  - The fine mesh
276068132eb9SMatthew G. Knepley . dmc  - The coarse mesh
276168132eb9SMatthew G. Knepley - user - The user context
276268132eb9SMatthew G. Knepley 
276368132eb9SMatthew G. Knepley   Output Parameter:
276468132eb9SMatthew G. Knepley . In - The interpolation matrix
276568132eb9SMatthew G. Knepley 
276668132eb9SMatthew G. Knepley   Level: developer
276768132eb9SMatthew G. Knepley 
27681cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexComputeInterpolatorNested()`, `DMPlexComputeJacobianFEM()`
276968132eb9SMatthew G. Knepley @*/
2770d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeInterpolatorGeneral(DM dmc, DM dmf, Mat In, void *user)
2771d71ae5a4SJacob Faibussowitsch {
277264e98e1dSMatthew G. Knepley   DM_Plex     *mesh = (DM_Plex *)dmf->data;
277364e98e1dSMatthew G. Knepley   const char  *name = "Interpolator";
27744ef9d792SMatthew G. Knepley   PetscDS      prob;
2775a0806964SMatthew G. Knepley   Mat          interp;
2776a0806964SMatthew G. Knepley   PetscSection fsection, globalFSection;
2777a0806964SMatthew G. Knepley   PetscSection csection, globalCSection;
2778a0806964SMatthew G. Knepley   PetscInt     locRows, locCols;
27794ef9d792SMatthew G. Knepley   PetscReal   *x, *v0, *J, *invJ, detJ;
27804ef9d792SMatthew G. Knepley   PetscReal   *v0c, *Jc, *invJc, detJc;
27814ef9d792SMatthew G. Knepley   PetscScalar *elemMat;
2782a0806964SMatthew G. Knepley   PetscInt     dim, Nf, field, totDim, cStart, cEnd, cell, ccell, s;
27834ef9d792SMatthew G. Knepley 
27844ef9d792SMatthew G. Knepley   PetscFunctionBegin;
27859566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(DMPLEX_InterpolatorFEM, dmc, dmf, 0, 0));
27869566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateDim(dmc, &dim));
27879566063dSJacob Faibussowitsch   PetscCall(DMGetDS(dmc, &prob));
27889566063dSJacob Faibussowitsch   PetscCall(PetscDSGetWorkspace(prob, &x, NULL, NULL, NULL, NULL));
27899566063dSJacob Faibussowitsch   PetscCall(PetscDSGetNumFields(prob, &Nf));
27909566063dSJacob Faibussowitsch   PetscCall(PetscMalloc3(dim, &v0, dim * dim, &J, dim * dim, &invJ));
27919566063dSJacob Faibussowitsch   PetscCall(PetscMalloc3(dim, &v0c, dim * dim, &Jc, dim * dim, &invJc));
27929566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dmf, &fsection));
27939566063dSJacob Faibussowitsch   PetscCall(DMGetGlobalSection(dmf, &globalFSection));
27949566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dmc, &csection));
27959566063dSJacob Faibussowitsch   PetscCall(DMGetGlobalSection(dmc, &globalCSection));
2796a0806964SMatthew G. Knepley   PetscCall(DMPlexGetSimplexOrBoxCells(dmf, 0, &cStart, &cEnd));
27979566063dSJacob Faibussowitsch   PetscCall(PetscDSGetTotalDimension(prob, &totDim));
27989566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(totDim, &elemMat));
27994ef9d792SMatthew G. Knepley 
2800a0806964SMatthew G. Knepley   PetscCall(MatGetLocalSize(In, &locRows, &locCols));
2801a0806964SMatthew G. Knepley   PetscCall(MatCreate(PetscObjectComm((PetscObject)In), &interp));
2802a0806964SMatthew G. Knepley   PetscCall(MatSetType(interp, MATPREALLOCATOR));
2803a0806964SMatthew G. Knepley   PetscCall(MatSetSizes(interp, locRows, locCols, PETSC_DETERMINE, PETSC_DETERMINE));
2804a0806964SMatthew G. Knepley   PetscCall(MatSetUp(interp));
2805a0806964SMatthew G. Knepley   for (s = 0; s < 2; ++s) {
28064ef9d792SMatthew G. Knepley     for (field = 0; field < Nf; ++field) {
28074ef9d792SMatthew G. Knepley       PetscObject      obj;
28084ef9d792SMatthew G. Knepley       PetscClassId     id;
2809c0d7054bSMatthew G. Knepley       PetscDualSpace   Q = NULL;
2810ef0bb6c7SMatthew G. Knepley       PetscTabulation  T = NULL;
28114ef9d792SMatthew G. Knepley       PetscQuadrature  f;
28124ef9d792SMatthew G. Knepley       const PetscReal *qpoints, *qweights;
2813d0f6233fSMatthew G. Knepley       PetscInt         Nc, qNc, Np, fpdim, off, i, d;
28144ef9d792SMatthew G. Knepley 
2815d0f6233fSMatthew G. Knepley       PetscCall(PetscDSGetFieldOffset(prob, field, &off));
28169566063dSJacob Faibussowitsch       PetscCall(PetscDSGetDiscretization(prob, field, &obj));
28179566063dSJacob Faibussowitsch       PetscCall(PetscObjectGetClassId(obj, &id));
28184ef9d792SMatthew G. Knepley       if (id == PETSCFE_CLASSID) {
28194ef9d792SMatthew G. Knepley         PetscFE fe = (PetscFE)obj;
28204ef9d792SMatthew G. Knepley 
28219566063dSJacob Faibussowitsch         PetscCall(PetscFEGetDualSpace(fe, &Q));
28229566063dSJacob Faibussowitsch         PetscCall(PetscFEGetNumComponents(fe, &Nc));
2823a0806964SMatthew G. Knepley         if (s) PetscCall(PetscFECreateTabulation(fe, 1, 1, x, 0, &T));
28244ef9d792SMatthew G. Knepley       } else if (id == PETSCFV_CLASSID) {
28254ef9d792SMatthew G. Knepley         PetscFV fv = (PetscFV)obj;
28264ef9d792SMatthew G. Knepley 
28279566063dSJacob Faibussowitsch         PetscCall(PetscFVGetDualSpace(fv, &Q));
28284ef9d792SMatthew G. Knepley         Nc = 1;
282963a3b9bcSJacob Faibussowitsch       } else SETERRQ(PetscObjectComm((PetscObject)dmc), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, field);
28309566063dSJacob Faibussowitsch       PetscCall(PetscDualSpaceGetDimension(Q, &fpdim));
28314ef9d792SMatthew G. Knepley       /* For each fine grid cell */
28324ef9d792SMatthew G. Knepley       for (cell = cStart; cell < cEnd; ++cell) {
28334ef9d792SMatthew G. Knepley         PetscInt *findices, *cindices;
28344ef9d792SMatthew G. Knepley         PetscInt  numFIndices, numCIndices;
28354ef9d792SMatthew G. Knepley 
28369566063dSJacob Faibussowitsch         PetscCall(DMPlexGetClosureIndices(dmf, fsection, globalFSection, cell, PETSC_FALSE, &numFIndices, &findices, NULL, NULL));
28379566063dSJacob Faibussowitsch         PetscCall(DMPlexComputeCellGeometryFEM(dmf, cell, NULL, v0, J, invJ, &detJ));
2838d0f6233fSMatthew G. Knepley         PetscCheck(numFIndices == totDim, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of fine indices %" PetscInt_FMT " != %" PetscInt_FMT " dual basis vecs", numFIndices, totDim);
28394ef9d792SMatthew G. Knepley         for (i = 0; i < fpdim; ++i) {
28404ef9d792SMatthew G. Knepley           Vec                pointVec;
28414ef9d792SMatthew G. Knepley           PetscScalar       *pV;
284212111d7cSToby Isaac           PetscSF            coarseCellSF = NULL;
28433a93e3b7SToby Isaac           const PetscSFNode *coarseCells;
2844d0f6233fSMatthew G. Knepley           PetscInt           numCoarseCells, cpdim, row = findices[i + off], q, c, j;
28454ef9d792SMatthew G. Knepley 
28464ef9d792SMatthew G. Knepley           /* Get points from the dual basis functional quadrature */
28479566063dSJacob Faibussowitsch           PetscCall(PetscDualSpaceGetFunctional(Q, i, &f));
28489566063dSJacob Faibussowitsch           PetscCall(PetscQuadratureGetData(f, NULL, &qNc, &Np, &qpoints, &qweights));
284963a3b9bcSJacob Faibussowitsch           PetscCheck(qNc == Nc, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of components in quadrature %" PetscInt_FMT " does not match coarse field %" PetscInt_FMT, qNc, Nc);
28509566063dSJacob Faibussowitsch           PetscCall(VecCreateSeq(PETSC_COMM_SELF, Np * dim, &pointVec));
28519566063dSJacob Faibussowitsch           PetscCall(VecSetBlockSize(pointVec, dim));
28529566063dSJacob Faibussowitsch           PetscCall(VecGetArray(pointVec, &pV));
28534ef9d792SMatthew G. Knepley           for (q = 0; q < Np; ++q) {
2854c330f8ffSToby Isaac             const PetscReal xi0[3] = {-1., -1., -1.};
2855c330f8ffSToby Isaac 
28564ef9d792SMatthew G. Knepley             /* Transform point to real space */
2857c330f8ffSToby Isaac             CoordinatesRefToReal(dim, dim, xi0, v0, J, &qpoints[q * dim], x);
28584ef9d792SMatthew G. Knepley             for (d = 0; d < dim; ++d) pV[q * dim + d] = x[d];
28594ef9d792SMatthew G. Knepley           }
28609566063dSJacob Faibussowitsch           PetscCall(VecRestoreArray(pointVec, &pV));
28614ef9d792SMatthew G. Knepley           /* Get set of coarse cells that overlap points (would like to group points by coarse cell) */
28621555c271SMatthew G. Knepley           /* OPT: Read this out from preallocation information */
28639566063dSJacob Faibussowitsch           PetscCall(DMLocatePoints(dmc, pointVec, DM_POINTLOCATION_NEAREST, &coarseCellSF));
28644ef9d792SMatthew G. Knepley           /* Update preallocation info */
28659566063dSJacob Faibussowitsch           PetscCall(PetscSFGetGraph(coarseCellSF, NULL, &numCoarseCells, NULL, &coarseCells));
28665f80ce2aSJacob Faibussowitsch           PetscCheck(numCoarseCells == Np, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Not all closure points located");
28679566063dSJacob Faibussowitsch           PetscCall(VecGetArray(pointVec, &pV));
28684ef9d792SMatthew G. Knepley           for (ccell = 0; ccell < numCoarseCells; ++ccell) {
2869826eb36dSMatthew G. Knepley             PetscReal       pVReal[3];
2870c330f8ffSToby Isaac             const PetscReal xi0[3] = {-1., -1., -1.};
2871826eb36dSMatthew G. Knepley 
28729566063dSJacob Faibussowitsch             PetscCall(DMPlexGetClosureIndices(dmc, csection, globalCSection, coarseCells[ccell].index, PETSC_FALSE, &numCIndices, &cindices, NULL, NULL));
2873a0806964SMatthew G. Knepley             if (id == PETSCFE_CLASSID) PetscCall(PetscFEGetDimension((PetscFE)obj, &cpdim));
2874a0806964SMatthew G. Knepley             else cpdim = 1;
2875a0806964SMatthew G. Knepley 
2876a0806964SMatthew G. Knepley             if (s) {
28774ef9d792SMatthew G. Knepley               /* Transform points from real space to coarse reference space */
28789566063dSJacob Faibussowitsch               PetscCall(DMPlexComputeCellGeometryFEM(dmc, coarseCells[ccell].index, NULL, v0c, Jc, invJc, &detJc));
2879e2d86523SMatthew G. Knepley               for (d = 0; d < dim; ++d) pVReal[d] = PetscRealPart(pV[ccell * dim + d]);
2880c330f8ffSToby Isaac               CoordinatesRealToRef(dim, dim, xi0, v0c, invJc, pVReal, x);
28814ef9d792SMatthew G. Knepley 
28824ef9d792SMatthew G. Knepley               if (id == PETSCFE_CLASSID) {
28834ef9d792SMatthew G. Knepley                 /* Evaluate coarse basis on contained point */
2884a0806964SMatthew G. Knepley                 PetscCall(PetscFEComputeTabulation((PetscFE)obj, 1, x, 0, T));
28859566063dSJacob Faibussowitsch                 PetscCall(PetscArrayzero(elemMat, cpdim));
28864ef9d792SMatthew G. Knepley                 /* Get elemMat entries by multiplying by weight */
28874ef9d792SMatthew G. Knepley                 for (j = 0; j < cpdim; ++j) {
2888ef0bb6c7SMatthew G. Knepley                   for (c = 0; c < Nc; ++c) elemMat[j] += T->T[0][j * Nc + c] * qweights[ccell * qNc + c];
28894ef9d792SMatthew G. Knepley                 }
28904ef9d792SMatthew G. Knepley               } else {
28914ef9d792SMatthew G. Knepley                 for (j = 0; j < cpdim; ++j) {
28929c3cf19fSMatthew G. Knepley                   for (c = 0; c < Nc; ++c) elemMat[j] += 1.0 * qweights[ccell * qNc + c];
28934ef9d792SMatthew G. Knepley                 }
28944ef9d792SMatthew G. Knepley               }
28959566063dSJacob Faibussowitsch               if (mesh->printFEM > 1) PetscCall(DMPrintCellMatrix(cell, name, 1, numCIndices, elemMat));
2896a0806964SMatthew G. Knepley             }
2897a0806964SMatthew G. Knepley             /* Update interpolator */
2898d0f6233fSMatthew G. Knepley             PetscCheck(numCIndices == totDim, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Number of element matrix columns %" PetscInt_FMT " != %" PetscInt_FMT, numCIndices, totDim);
2899a0806964SMatthew G. Knepley             PetscCall(MatSetValues(interp, 1, &row, cpdim, &cindices[off], elemMat, INSERT_VALUES));
29009566063dSJacob Faibussowitsch             PetscCall(DMPlexRestoreClosureIndices(dmc, csection, globalCSection, coarseCells[ccell].index, PETSC_FALSE, &numCIndices, &cindices, NULL, NULL));
29014ef9d792SMatthew G. Knepley           }
29029566063dSJacob Faibussowitsch           PetscCall(VecRestoreArray(pointVec, &pV));
29039566063dSJacob Faibussowitsch           PetscCall(PetscSFDestroy(&coarseCellSF));
29049566063dSJacob Faibussowitsch           PetscCall(VecDestroy(&pointVec));
29054ef9d792SMatthew G. Knepley         }
29069566063dSJacob Faibussowitsch         PetscCall(DMPlexRestoreClosureIndices(dmf, fsection, globalFSection, cell, PETSC_FALSE, &numFIndices, &findices, NULL, NULL));
29074ef9d792SMatthew G. Knepley       }
2908a0806964SMatthew G. Knepley       if (s && id == PETSCFE_CLASSID) PetscCall(PetscTabulationDestroy(&T));
2909a0806964SMatthew G. Knepley     }
2910a0806964SMatthew G. Knepley     if (!s) {
2911a0806964SMatthew G. Knepley       PetscCall(MatAssemblyBegin(interp, MAT_FINAL_ASSEMBLY));
2912a0806964SMatthew G. Knepley       PetscCall(MatAssemblyEnd(interp, MAT_FINAL_ASSEMBLY));
2913a0806964SMatthew G. Knepley       PetscCall(MatPreallocatorPreallocate(interp, PETSC_TRUE, In));
2914a0806964SMatthew G. Knepley       PetscCall(MatDestroy(&interp));
2915a0806964SMatthew G. Knepley       interp = In;
2916a0806964SMatthew G. Knepley     }
29174ef9d792SMatthew G. Knepley   }
29189566063dSJacob Faibussowitsch   PetscCall(PetscFree3(v0, J, invJ));
29199566063dSJacob Faibussowitsch   PetscCall(PetscFree3(v0c, Jc, invJc));
29209566063dSJacob Faibussowitsch   PetscCall(PetscFree(elemMat));
29219566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(In, MAT_FINAL_ASSEMBLY));
29229566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(In, MAT_FINAL_ASSEMBLY));
29239566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(DMPLEX_InterpolatorFEM, dmc, dmf, 0, 0));
29243ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
29254ef9d792SMatthew G. Knepley }
29264ef9d792SMatthew G. Knepley 
292746fa42a0SMatthew G. Knepley /*@
2928a1cb98faSBarry Smith   DMPlexComputeMassMatrixGeneral - Form the local portion of the mass matrix M from the coarse `DM` to a non-nested fine `DM`.
2929bd041c0cSMatthew G. Knepley 
2930bd041c0cSMatthew G. Knepley   Input Parameters:
2931bd041c0cSMatthew G. Knepley + dmf  - The fine mesh
2932bd041c0cSMatthew G. Knepley . dmc  - The coarse mesh
2933bd041c0cSMatthew G. Knepley - user - The user context
2934bd041c0cSMatthew G. Knepley 
2935bd041c0cSMatthew G. Knepley   Output Parameter:
2936bd041c0cSMatthew G. Knepley . mass - The mass matrix
2937bd041c0cSMatthew G. Knepley 
2938bd041c0cSMatthew G. Knepley   Level: developer
2939bd041c0cSMatthew G. Knepley 
29401cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexComputeMassMatrixNested()`, `DMPlexComputeInterpolatorNested()`, `DMPlexComputeInterpolatorGeneral()`, `DMPlexComputeJacobianFEM()`
2941bd041c0cSMatthew G. Knepley @*/
2942d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeMassMatrixGeneral(DM dmc, DM dmf, Mat mass, void *user)
2943d71ae5a4SJacob Faibussowitsch {
2944bd041c0cSMatthew G. Knepley   DM_Plex     *mesh = (DM_Plex *)dmf->data;
2945bd041c0cSMatthew G. Knepley   const char  *name = "Mass Matrix";
2946bd041c0cSMatthew G. Knepley   PetscDS      prob;
2947bd041c0cSMatthew G. Knepley   PetscSection fsection, csection, globalFSection, globalCSection;
2948e8f14785SLisandro Dalcin   PetscHSetIJ  ht;
2949bd041c0cSMatthew G. Knepley   PetscLayout  rLayout;
2950bd041c0cSMatthew G. Knepley   PetscInt    *dnz, *onz;
2951bd041c0cSMatthew G. Knepley   PetscInt     locRows, rStart, rEnd;
2952bd041c0cSMatthew G. Knepley   PetscReal   *x, *v0, *J, *invJ, detJ;
2953bd041c0cSMatthew G. Knepley   PetscReal   *v0c, *Jc, *invJc, detJc;
2954bd041c0cSMatthew G. Knepley   PetscScalar *elemMat;
2955bd041c0cSMatthew G. Knepley   PetscInt     dim, Nf, field, totDim, cStart, cEnd, cell, ccell;
2956bd041c0cSMatthew G. Knepley 
2957bd041c0cSMatthew G. Knepley   PetscFunctionBegin;
29589566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateDim(dmc, &dim));
29599566063dSJacob Faibussowitsch   PetscCall(DMGetDS(dmc, &prob));
29609566063dSJacob Faibussowitsch   PetscCall(PetscDSGetWorkspace(prob, &x, NULL, NULL, NULL, NULL));
29619566063dSJacob Faibussowitsch   PetscCall(PetscDSGetNumFields(prob, &Nf));
29629566063dSJacob Faibussowitsch   PetscCall(PetscMalloc3(dim, &v0, dim * dim, &J, dim * dim, &invJ));
29639566063dSJacob Faibussowitsch   PetscCall(PetscMalloc3(dim, &v0c, dim * dim, &Jc, dim * dim, &invJc));
29649566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dmf, &fsection));
29659566063dSJacob Faibussowitsch   PetscCall(DMGetGlobalSection(dmf, &globalFSection));
29669566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dmc, &csection));
29679566063dSJacob Faibussowitsch   PetscCall(DMGetGlobalSection(dmc, &globalCSection));
29689566063dSJacob Faibussowitsch   PetscCall(DMPlexGetHeightStratum(dmf, 0, &cStart, &cEnd));
29699566063dSJacob Faibussowitsch   PetscCall(PetscDSGetTotalDimension(prob, &totDim));
29709566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(totDim, &elemMat));
2971bd041c0cSMatthew G. Knepley 
29729566063dSJacob Faibussowitsch   PetscCall(MatGetLocalSize(mass, &locRows, NULL));
29739566063dSJacob Faibussowitsch   PetscCall(PetscLayoutCreate(PetscObjectComm((PetscObject)mass), &rLayout));
29749566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetLocalSize(rLayout, locRows));
29759566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetBlockSize(rLayout, 1));
29769566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(rLayout));
29779566063dSJacob Faibussowitsch   PetscCall(PetscLayoutGetRange(rLayout, &rStart, &rEnd));
29789566063dSJacob Faibussowitsch   PetscCall(PetscLayoutDestroy(&rLayout));
29799566063dSJacob Faibussowitsch   PetscCall(PetscCalloc2(locRows, &dnz, locRows, &onz));
29809566063dSJacob Faibussowitsch   PetscCall(PetscHSetIJCreate(&ht));
2981bd041c0cSMatthew G. Knepley   for (field = 0; field < Nf; ++field) {
2982bd041c0cSMatthew G. Knepley     PetscObject      obj;
2983bd041c0cSMatthew G. Knepley     PetscClassId     id;
2984bd041c0cSMatthew G. Knepley     PetscQuadrature  quad;
2985bd041c0cSMatthew G. Knepley     const PetscReal *qpoints;
2986bd041c0cSMatthew G. Knepley     PetscInt         Nq, Nc, i, d;
2987bd041c0cSMatthew G. Knepley 
29889566063dSJacob Faibussowitsch     PetscCall(PetscDSGetDiscretization(prob, field, &obj));
29899566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetClassId(obj, &id));
29909566063dSJacob Faibussowitsch     if (id == PETSCFE_CLASSID) PetscCall(PetscFEGetQuadrature((PetscFE)obj, &quad));
29919566063dSJacob Faibussowitsch     else PetscCall(PetscFVGetQuadrature((PetscFV)obj, &quad));
29929566063dSJacob Faibussowitsch     PetscCall(PetscQuadratureGetData(quad, NULL, &Nc, &Nq, &qpoints, NULL));
2993bd041c0cSMatthew G. Knepley     /* For each fine grid cell */
2994bd041c0cSMatthew G. Knepley     for (cell = cStart; cell < cEnd; ++cell) {
2995bd041c0cSMatthew G. Knepley       Vec                pointVec;
2996bd041c0cSMatthew G. Knepley       PetscScalar       *pV;
2997bd041c0cSMatthew G. Knepley       PetscSF            coarseCellSF = NULL;
2998bd041c0cSMatthew G. Knepley       const PetscSFNode *coarseCells;
2999bd041c0cSMatthew G. Knepley       PetscInt           numCoarseCells, q, c;
3000bd041c0cSMatthew G. Knepley       PetscInt          *findices, *cindices;
3001bd041c0cSMatthew G. Knepley       PetscInt           numFIndices, numCIndices;
3002bd041c0cSMatthew G. Knepley 
30039566063dSJacob Faibussowitsch       PetscCall(DMPlexGetClosureIndices(dmf, fsection, globalFSection, cell, PETSC_FALSE, &numFIndices, &findices, NULL, NULL));
30049566063dSJacob Faibussowitsch       PetscCall(DMPlexComputeCellGeometryFEM(dmf, cell, NULL, v0, J, invJ, &detJ));
3005bd041c0cSMatthew G. Knepley       /* Get points from the quadrature */
30069566063dSJacob Faibussowitsch       PetscCall(VecCreateSeq(PETSC_COMM_SELF, Nq * dim, &pointVec));
30079566063dSJacob Faibussowitsch       PetscCall(VecSetBlockSize(pointVec, dim));
30089566063dSJacob Faibussowitsch       PetscCall(VecGetArray(pointVec, &pV));
3009bd041c0cSMatthew G. Knepley       for (q = 0; q < Nq; ++q) {
3010c330f8ffSToby Isaac         const PetscReal xi0[3] = {-1., -1., -1.};
3011c330f8ffSToby Isaac 
3012bd041c0cSMatthew G. Knepley         /* Transform point to real space */
3013c330f8ffSToby Isaac         CoordinatesRefToReal(dim, dim, xi0, v0, J, &qpoints[q * dim], x);
3014bd041c0cSMatthew G. Knepley         for (d = 0; d < dim; ++d) pV[q * dim + d] = x[d];
3015bd041c0cSMatthew G. Knepley       }
30169566063dSJacob Faibussowitsch       PetscCall(VecRestoreArray(pointVec, &pV));
3017bd041c0cSMatthew G. Knepley       /* Get set of coarse cells that overlap points (would like to group points by coarse cell) */
30189566063dSJacob Faibussowitsch       PetscCall(DMLocatePoints(dmc, pointVec, DM_POINTLOCATION_NEAREST, &coarseCellSF));
30199566063dSJacob Faibussowitsch       PetscCall(PetscSFViewFromOptions(coarseCellSF, NULL, "-interp_sf_view"));
3020bd041c0cSMatthew G. Knepley       /* Update preallocation info */
30219566063dSJacob Faibussowitsch       PetscCall(PetscSFGetGraph(coarseCellSF, NULL, &numCoarseCells, NULL, &coarseCells));
30225f80ce2aSJacob Faibussowitsch       PetscCheck(numCoarseCells == Nq, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Not all closure points located");
3023bd041c0cSMatthew G. Knepley       {
3024e8f14785SLisandro Dalcin         PetscHashIJKey key;
3025e8f14785SLisandro Dalcin         PetscBool      missing;
3026bd041c0cSMatthew G. Knepley 
3027bd041c0cSMatthew G. Knepley         for (i = 0; i < numFIndices; ++i) {
3028e8f14785SLisandro Dalcin           key.i = findices[i];
3029e8f14785SLisandro Dalcin           if (key.i >= 0) {
3030bd041c0cSMatthew G. Knepley             /* Get indices for coarse elements */
3031bd041c0cSMatthew G. Knepley             for (ccell = 0; ccell < numCoarseCells; ++ccell) {
30329566063dSJacob Faibussowitsch               PetscCall(DMPlexGetClosureIndices(dmc, csection, globalCSection, coarseCells[ccell].index, PETSC_FALSE, &numCIndices, &cindices, NULL, NULL));
3033bd041c0cSMatthew G. Knepley               for (c = 0; c < numCIndices; ++c) {
3034e8f14785SLisandro Dalcin                 key.j = cindices[c];
3035e8f14785SLisandro Dalcin                 if (key.j < 0) continue;
30369566063dSJacob Faibussowitsch                 PetscCall(PetscHSetIJQueryAdd(ht, key, &missing));
3037bd041c0cSMatthew G. Knepley                 if (missing) {
3038e8f14785SLisandro Dalcin                   if ((key.j >= rStart) && (key.j < rEnd)) ++dnz[key.i - rStart];
3039e8f14785SLisandro Dalcin                   else ++onz[key.i - rStart];
3040bd041c0cSMatthew G. Knepley                 }
3041bd041c0cSMatthew G. Knepley               }
30429566063dSJacob Faibussowitsch               PetscCall(DMPlexRestoreClosureIndices(dmc, csection, globalCSection, coarseCells[ccell].index, PETSC_FALSE, &numCIndices, &cindices, NULL, NULL));
3043bd041c0cSMatthew G. Knepley             }
3044bd041c0cSMatthew G. Knepley           }
3045bd041c0cSMatthew G. Knepley         }
3046bd041c0cSMatthew G. Knepley       }
30479566063dSJacob Faibussowitsch       PetscCall(PetscSFDestroy(&coarseCellSF));
30489566063dSJacob Faibussowitsch       PetscCall(VecDestroy(&pointVec));
30499566063dSJacob Faibussowitsch       PetscCall(DMPlexRestoreClosureIndices(dmf, fsection, globalFSection, cell, PETSC_FALSE, &numFIndices, &findices, NULL, NULL));
3050bd041c0cSMatthew G. Knepley     }
3051bd041c0cSMatthew G. Knepley   }
30529566063dSJacob Faibussowitsch   PetscCall(PetscHSetIJDestroy(&ht));
30539566063dSJacob Faibussowitsch   PetscCall(MatXAIJSetPreallocation(mass, 1, dnz, onz, NULL, NULL));
30549566063dSJacob Faibussowitsch   PetscCall(MatSetOption(mass, MAT_NEW_NONZERO_ALLOCATION_ERR, PETSC_TRUE));
30559566063dSJacob Faibussowitsch   PetscCall(PetscFree2(dnz, onz));
3056bd041c0cSMatthew G. Knepley   for (field = 0; field < Nf; ++field) {
3057bd041c0cSMatthew G. Knepley     PetscObject      obj;
3058bd041c0cSMatthew G. Knepley     PetscClassId     id;
3059ef0bb6c7SMatthew G. Knepley     PetscTabulation  T, Tfine;
3060bd041c0cSMatthew G. Knepley     PetscQuadrature  quad;
3061bd041c0cSMatthew G. Knepley     const PetscReal *qpoints, *qweights;
3062bd041c0cSMatthew G. Knepley     PetscInt         Nq, Nc, i, d;
3063bd041c0cSMatthew G. Knepley 
30649566063dSJacob Faibussowitsch     PetscCall(PetscDSGetDiscretization(prob, field, &obj));
30659566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetClassId(obj, &id));
3066ef0bb6c7SMatthew G. Knepley     if (id == PETSCFE_CLASSID) {
30679566063dSJacob Faibussowitsch       PetscCall(PetscFEGetQuadrature((PetscFE)obj, &quad));
30689566063dSJacob Faibussowitsch       PetscCall(PetscFEGetCellTabulation((PetscFE)obj, 1, &Tfine));
30699566063dSJacob Faibussowitsch       PetscCall(PetscFECreateTabulation((PetscFE)obj, 1, 1, x, 0, &T));
3070ef0bb6c7SMatthew G. Knepley     } else {
30719566063dSJacob Faibussowitsch       PetscCall(PetscFVGetQuadrature((PetscFV)obj, &quad));
3072ef0bb6c7SMatthew G. Knepley     }
30739566063dSJacob Faibussowitsch     PetscCall(PetscQuadratureGetData(quad, NULL, &Nc, &Nq, &qpoints, &qweights));
3074bd041c0cSMatthew G. Knepley     /* For each fine grid cell */
3075bd041c0cSMatthew G. Knepley     for (cell = cStart; cell < cEnd; ++cell) {
3076bd041c0cSMatthew G. Knepley       Vec                pointVec;
3077bd041c0cSMatthew G. Knepley       PetscScalar       *pV;
3078bd041c0cSMatthew G. Knepley       PetscSF            coarseCellSF = NULL;
3079bd041c0cSMatthew G. Knepley       const PetscSFNode *coarseCells;
3080bd041c0cSMatthew G. Knepley       PetscInt           numCoarseCells, cpdim, q, c, j;
3081bd041c0cSMatthew G. Knepley       PetscInt          *findices, *cindices;
3082bd041c0cSMatthew G. Knepley       PetscInt           numFIndices, numCIndices;
3083bd041c0cSMatthew G. Knepley 
30849566063dSJacob Faibussowitsch       PetscCall(DMPlexGetClosureIndices(dmf, fsection, globalFSection, cell, PETSC_FALSE, &numFIndices, &findices, NULL, NULL));
30859566063dSJacob Faibussowitsch       PetscCall(DMPlexComputeCellGeometryFEM(dmf, cell, NULL, v0, J, invJ, &detJ));
3086bd041c0cSMatthew G. Knepley       /* Get points from the quadrature */
30879566063dSJacob Faibussowitsch       PetscCall(VecCreateSeq(PETSC_COMM_SELF, Nq * dim, &pointVec));
30889566063dSJacob Faibussowitsch       PetscCall(VecSetBlockSize(pointVec, dim));
30899566063dSJacob Faibussowitsch       PetscCall(VecGetArray(pointVec, &pV));
3090bd041c0cSMatthew G. Knepley       for (q = 0; q < Nq; ++q) {
3091c330f8ffSToby Isaac         const PetscReal xi0[3] = {-1., -1., -1.};
3092c330f8ffSToby Isaac 
3093bd041c0cSMatthew G. Knepley         /* Transform point to real space */
3094c330f8ffSToby Isaac         CoordinatesRefToReal(dim, dim, xi0, v0, J, &qpoints[q * dim], x);
3095bd041c0cSMatthew G. Knepley         for (d = 0; d < dim; ++d) pV[q * dim + d] = x[d];
3096bd041c0cSMatthew G. Knepley       }
30979566063dSJacob Faibussowitsch       PetscCall(VecRestoreArray(pointVec, &pV));
3098bd041c0cSMatthew G. Knepley       /* Get set of coarse cells that overlap points (would like to group points by coarse cell) */
30999566063dSJacob Faibussowitsch       PetscCall(DMLocatePoints(dmc, pointVec, DM_POINTLOCATION_NEAREST, &coarseCellSF));
3100bd041c0cSMatthew G. Knepley       /* Update matrix */
31019566063dSJacob Faibussowitsch       PetscCall(PetscSFGetGraph(coarseCellSF, NULL, &numCoarseCells, NULL, &coarseCells));
31025f80ce2aSJacob Faibussowitsch       PetscCheck(numCoarseCells == Nq, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Not all closure points located");
31039566063dSJacob Faibussowitsch       PetscCall(VecGetArray(pointVec, &pV));
3104bd041c0cSMatthew G. Knepley       for (ccell = 0; ccell < numCoarseCells; ++ccell) {
3105bd041c0cSMatthew G. Knepley         PetscReal       pVReal[3];
3106c330f8ffSToby Isaac         const PetscReal xi0[3] = {-1., -1., -1.};
3107c330f8ffSToby Isaac 
31089566063dSJacob Faibussowitsch         PetscCall(DMPlexGetClosureIndices(dmc, csection, globalCSection, coarseCells[ccell].index, PETSC_FALSE, &numCIndices, &cindices, NULL, NULL));
3109bd041c0cSMatthew G. Knepley         /* Transform points from real space to coarse reference space */
31109566063dSJacob Faibussowitsch         PetscCall(DMPlexComputeCellGeometryFEM(dmc, coarseCells[ccell].index, NULL, v0c, Jc, invJc, &detJc));
3111bd041c0cSMatthew G. Knepley         for (d = 0; d < dim; ++d) pVReal[d] = PetscRealPart(pV[ccell * dim + d]);
3112c330f8ffSToby Isaac         CoordinatesRealToRef(dim, dim, xi0, v0c, invJc, pVReal, x);
3113bd041c0cSMatthew G. Knepley 
3114bd041c0cSMatthew G. Knepley         if (id == PETSCFE_CLASSID) {
3115bd041c0cSMatthew G. Knepley           PetscFE fe = (PetscFE)obj;
3116bd041c0cSMatthew G. Knepley 
3117bd041c0cSMatthew G. Knepley           /* Evaluate coarse basis on contained point */
31189566063dSJacob Faibussowitsch           PetscCall(PetscFEGetDimension(fe, &cpdim));
31199566063dSJacob Faibussowitsch           PetscCall(PetscFEComputeTabulation(fe, 1, x, 0, T));
3120bd041c0cSMatthew G. Knepley           /* Get elemMat entries by multiplying by weight */
3121bd041c0cSMatthew G. Knepley           for (i = 0; i < numFIndices; ++i) {
31229566063dSJacob Faibussowitsch             PetscCall(PetscArrayzero(elemMat, cpdim));
3123bd041c0cSMatthew G. Knepley             for (j = 0; j < cpdim; ++j) {
3124ef0bb6c7SMatthew G. Knepley               for (c = 0; c < Nc; ++c) elemMat[j] += T->T[0][j * Nc + c] * Tfine->T[0][(ccell * numFIndices + i) * Nc + c] * qweights[ccell * Nc + c] * detJ;
3125bd041c0cSMatthew G. Knepley             }
3126bd041c0cSMatthew G. Knepley             /* Update interpolator */
31279566063dSJacob Faibussowitsch             if (mesh->printFEM > 1) PetscCall(DMPrintCellMatrix(cell, name, 1, numCIndices, elemMat));
312863a3b9bcSJacob Faibussowitsch             PetscCheck(numCIndices == cpdim, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Number of element matrix columns %" PetscInt_FMT " != %" PetscInt_FMT, numCIndices, cpdim);
31299566063dSJacob Faibussowitsch             PetscCall(MatSetValues(mass, 1, &findices[i], numCIndices, cindices, elemMat, ADD_VALUES));
3130bd041c0cSMatthew G. Knepley           }
3131bd041c0cSMatthew G. Knepley         } else {
3132bd041c0cSMatthew G. Knepley           cpdim = 1;
3133bd041c0cSMatthew G. Knepley           for (i = 0; i < numFIndices; ++i) {
31349566063dSJacob Faibussowitsch             PetscCall(PetscArrayzero(elemMat, cpdim));
3135bd041c0cSMatthew G. Knepley             for (j = 0; j < cpdim; ++j) {
3136bd041c0cSMatthew G. Knepley               for (c = 0; c < Nc; ++c) elemMat[j] += 1.0 * 1.0 * qweights[ccell * Nc + c] * detJ;
3137bd041c0cSMatthew G. Knepley             }
3138bd041c0cSMatthew G. Knepley             /* Update interpolator */
31399566063dSJacob Faibussowitsch             if (mesh->printFEM > 1) PetscCall(DMPrintCellMatrix(cell, name, 1, numCIndices, elemMat));
314063a3b9bcSJacob Faibussowitsch             PetscCall(PetscPrintf(PETSC_COMM_SELF, "Nq: %" PetscInt_FMT " %" PetscInt_FMT " Nf: %" PetscInt_FMT " %" PetscInt_FMT " Nc: %" PetscInt_FMT " %" PetscInt_FMT "\n", ccell, Nq, i, numFIndices, j, numCIndices));
314163a3b9bcSJacob Faibussowitsch             PetscCheck(numCIndices == cpdim, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Number of element matrix columns %" PetscInt_FMT " != %" PetscInt_FMT, numCIndices, cpdim);
31429566063dSJacob Faibussowitsch             PetscCall(MatSetValues(mass, 1, &findices[i], numCIndices, cindices, elemMat, ADD_VALUES));
3143bd041c0cSMatthew G. Knepley           }
3144bd041c0cSMatthew G. Knepley         }
31459566063dSJacob Faibussowitsch         PetscCall(DMPlexRestoreClosureIndices(dmc, csection, globalCSection, coarseCells[ccell].index, PETSC_FALSE, &numCIndices, &cindices, NULL, NULL));
3146bd041c0cSMatthew G. Knepley       }
31479566063dSJacob Faibussowitsch       PetscCall(VecRestoreArray(pointVec, &pV));
31489566063dSJacob Faibussowitsch       PetscCall(PetscSFDestroy(&coarseCellSF));
31499566063dSJacob Faibussowitsch       PetscCall(VecDestroy(&pointVec));
31509566063dSJacob Faibussowitsch       PetscCall(DMPlexRestoreClosureIndices(dmf, fsection, globalFSection, cell, PETSC_FALSE, &numFIndices, &findices, NULL, NULL));
3151bd041c0cSMatthew G. Knepley     }
31529566063dSJacob Faibussowitsch     if (id == PETSCFE_CLASSID) PetscCall(PetscTabulationDestroy(&T));
3153bd041c0cSMatthew G. Knepley   }
31549566063dSJacob Faibussowitsch   PetscCall(PetscFree3(v0, J, invJ));
31559566063dSJacob Faibussowitsch   PetscCall(PetscFree3(v0c, Jc, invJc));
31569566063dSJacob Faibussowitsch   PetscCall(PetscFree(elemMat));
31579566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(mass, MAT_FINAL_ASSEMBLY));
31589566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(mass, MAT_FINAL_ASSEMBLY));
31593ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3160bd041c0cSMatthew G. Knepley }
3161bd041c0cSMatthew G. Knepley 
3162bd041c0cSMatthew G. Knepley /*@
316346fa42a0SMatthew G. Knepley   DMPlexComputeInjectorFEM - Compute a mapping from coarse unknowns to fine unknowns
316446fa42a0SMatthew G. Knepley 
316546fa42a0SMatthew G. Knepley   Input Parameters:
316646fa42a0SMatthew G. Knepley + dmc  - The coarse mesh
316760225df5SJacob Faibussowitsch . dmf  - The fine mesh
316846fa42a0SMatthew G. Knepley - user - The user context
316946fa42a0SMatthew G. Knepley 
317046fa42a0SMatthew G. Knepley   Output Parameter:
317146fa42a0SMatthew G. Knepley . sc - The mapping
317246fa42a0SMatthew G. Knepley 
317346fa42a0SMatthew G. Knepley   Level: developer
317446fa42a0SMatthew G. Knepley 
31751cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexComputeInterpolatorNested()`, `DMPlexComputeJacobianFEM()`
317646fa42a0SMatthew G. Knepley @*/
3177d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeInjectorFEM(DM dmc, DM dmf, VecScatter *sc, void *user)
3178d71ae5a4SJacob Faibussowitsch {
3179e9d4ef1bSMatthew G. Knepley   PetscDS      prob;
31807c927364SMatthew G. Knepley   PetscFE     *feRef;
318197c42addSMatthew G. Knepley   PetscFV     *fvRef;
31827c927364SMatthew G. Knepley   Vec          fv, cv;
31837c927364SMatthew G. Knepley   IS           fis, cis;
31847c927364SMatthew G. Knepley   PetscSection fsection, fglobalSection, csection, cglobalSection;
31857c927364SMatthew G. Knepley   PetscInt    *cmap, *cellCIndices, *cellFIndices, *cindices, *findices;
3186485ad865SMatthew G. Knepley   PetscInt     cTotDim, fTotDim = 0, Nf, f, field, cStart, cEnd, c, dim, d, startC, endC, offsetC, offsetF, m;
31876f3d3cbcSMatthew G. Knepley   PetscBool   *needAvg;
31887c927364SMatthew G. Knepley 
31897c927364SMatthew G. Knepley   PetscFunctionBegin;
31909566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(DMPLEX_InjectorFEM, dmc, dmf, 0, 0));
31919566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dmf, &dim));
31929566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dmf, &fsection));
31939566063dSJacob Faibussowitsch   PetscCall(DMGetGlobalSection(dmf, &fglobalSection));
31949566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dmc, &csection));
31959566063dSJacob Faibussowitsch   PetscCall(DMGetGlobalSection(dmc, &cglobalSection));
31969566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetNumFields(fsection, &Nf));
31979566063dSJacob Faibussowitsch   PetscCall(DMPlexGetSimplexOrBoxCells(dmc, 0, &cStart, &cEnd));
31989566063dSJacob Faibussowitsch   PetscCall(DMGetDS(dmc, &prob));
31999566063dSJacob Faibussowitsch   PetscCall(PetscCalloc3(Nf, &feRef, Nf, &fvRef, Nf, &needAvg));
32007c927364SMatthew G. Knepley   for (f = 0; f < Nf; ++f) {
320197c42addSMatthew G. Knepley     PetscObject  obj;
320297c42addSMatthew G. Knepley     PetscClassId id;
3203aa7890ccSMatthew G. Knepley     PetscInt     fNb = 0, Nc = 0;
32047c927364SMatthew G. Knepley 
32059566063dSJacob Faibussowitsch     PetscCall(PetscDSGetDiscretization(prob, f, &obj));
32069566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetClassId(obj, &id));
320797c42addSMatthew G. Knepley     if (id == PETSCFE_CLASSID) {
320897c42addSMatthew G. Knepley       PetscFE    fe = (PetscFE)obj;
32096f3d3cbcSMatthew G. Knepley       PetscSpace sp;
32109b2fc754SMatthew G. Knepley       PetscInt   maxDegree;
321197c42addSMatthew G. Knepley 
32129566063dSJacob Faibussowitsch       PetscCall(PetscFERefine(fe, &feRef[f]));
32139566063dSJacob Faibussowitsch       PetscCall(PetscFEGetDimension(feRef[f], &fNb));
32149566063dSJacob Faibussowitsch       PetscCall(PetscFEGetNumComponents(fe, &Nc));
32159566063dSJacob Faibussowitsch       PetscCall(PetscFEGetBasisSpace(fe, &sp));
32169566063dSJacob Faibussowitsch       PetscCall(PetscSpaceGetDegree(sp, NULL, &maxDegree));
32179b2fc754SMatthew G. Knepley       if (!maxDegree) needAvg[f] = PETSC_TRUE;
321897c42addSMatthew G. Knepley     } else if (id == PETSCFV_CLASSID) {
321997c42addSMatthew G. Knepley       PetscFV        fv = (PetscFV)obj;
322097c42addSMatthew G. Knepley       PetscDualSpace Q;
322197c42addSMatthew G. Knepley 
32229566063dSJacob Faibussowitsch       PetscCall(PetscFVRefine(fv, &fvRef[f]));
32239566063dSJacob Faibussowitsch       PetscCall(PetscFVGetDualSpace(fvRef[f], &Q));
32249566063dSJacob Faibussowitsch       PetscCall(PetscDualSpaceGetDimension(Q, &fNb));
32259566063dSJacob Faibussowitsch       PetscCall(PetscFVGetNumComponents(fv, &Nc));
32266f3d3cbcSMatthew G. Knepley       needAvg[f] = PETSC_TRUE;
322797c42addSMatthew G. Knepley     }
3228d172c84bSMatthew G. Knepley     fTotDim += fNb;
32297c927364SMatthew G. Knepley   }
32309566063dSJacob Faibussowitsch   PetscCall(PetscDSGetTotalDimension(prob, &cTotDim));
32319566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(cTotDim, &cmap));
32327c927364SMatthew G. Knepley   for (field = 0, offsetC = 0, offsetF = 0; field < Nf; ++field) {
32337c927364SMatthew G. Knepley     PetscFE        feC;
323497c42addSMatthew G. Knepley     PetscFV        fvC;
32357c927364SMatthew G. Knepley     PetscDualSpace QF, QC;
3236d172c84bSMatthew G. Knepley     PetscInt       order = -1, NcF, NcC, fpdim, cpdim;
32377c927364SMatthew G. Knepley 
323897c42addSMatthew G. Knepley     if (feRef[field]) {
32399566063dSJacob Faibussowitsch       PetscCall(PetscDSGetDiscretization(prob, field, (PetscObject *)&feC));
32409566063dSJacob Faibussowitsch       PetscCall(PetscFEGetNumComponents(feC, &NcC));
32419566063dSJacob Faibussowitsch       PetscCall(PetscFEGetNumComponents(feRef[field], &NcF));
32429566063dSJacob Faibussowitsch       PetscCall(PetscFEGetDualSpace(feRef[field], &QF));
32439566063dSJacob Faibussowitsch       PetscCall(PetscDualSpaceGetOrder(QF, &order));
32449566063dSJacob Faibussowitsch       PetscCall(PetscDualSpaceGetDimension(QF, &fpdim));
32459566063dSJacob Faibussowitsch       PetscCall(PetscFEGetDualSpace(feC, &QC));
32469566063dSJacob Faibussowitsch       PetscCall(PetscDualSpaceGetDimension(QC, &cpdim));
324797c42addSMatthew G. Knepley     } else {
32489566063dSJacob Faibussowitsch       PetscCall(PetscDSGetDiscretization(prob, field, (PetscObject *)&fvC));
32499566063dSJacob Faibussowitsch       PetscCall(PetscFVGetNumComponents(fvC, &NcC));
32509566063dSJacob Faibussowitsch       PetscCall(PetscFVGetNumComponents(fvRef[field], &NcF));
32519566063dSJacob Faibussowitsch       PetscCall(PetscFVGetDualSpace(fvRef[field], &QF));
32529566063dSJacob Faibussowitsch       PetscCall(PetscDualSpaceGetDimension(QF, &fpdim));
32539566063dSJacob Faibussowitsch       PetscCall(PetscFVGetDualSpace(fvC, &QC));
32549566063dSJacob Faibussowitsch       PetscCall(PetscDualSpaceGetDimension(QC, &cpdim));
325597c42addSMatthew G. Knepley     }
325663a3b9bcSJacob Faibussowitsch     PetscCheck(NcF == NcC, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of components in fine space field %" PetscInt_FMT " does not match coarse field %" PetscInt_FMT, NcF, NcC);
32577c927364SMatthew G. Knepley     for (c = 0; c < cpdim; ++c) {
32587c927364SMatthew G. Knepley       PetscQuadrature  cfunc;
3259d172c84bSMatthew G. Knepley       const PetscReal *cqpoints, *cqweights;
3260d172c84bSMatthew G. Knepley       PetscInt         NqcC, NpC;
326197c42addSMatthew G. Knepley       PetscBool        found = PETSC_FALSE;
32627c927364SMatthew G. Knepley 
32639566063dSJacob Faibussowitsch       PetscCall(PetscDualSpaceGetFunctional(QC, c, &cfunc));
32649566063dSJacob Faibussowitsch       PetscCall(PetscQuadratureGetData(cfunc, NULL, &NqcC, &NpC, &cqpoints, &cqweights));
326563a3b9bcSJacob Faibussowitsch       PetscCheck(NqcC == NcC, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of quadrature components %" PetscInt_FMT " must match number of field components %" PetscInt_FMT, NqcC, NcC);
32661dca8a05SBarry Smith       PetscCheck(NpC == 1 || !feRef[field], PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Do not know how to do injection for moments");
32677c927364SMatthew G. Knepley       for (f = 0; f < fpdim; ++f) {
32687c927364SMatthew G. Knepley         PetscQuadrature  ffunc;
3269d172c84bSMatthew G. Knepley         const PetscReal *fqpoints, *fqweights;
32707c927364SMatthew G. Knepley         PetscReal        sum = 0.0;
3271d172c84bSMatthew G. Knepley         PetscInt         NqcF, NpF;
32727c927364SMatthew G. Knepley 
32739566063dSJacob Faibussowitsch         PetscCall(PetscDualSpaceGetFunctional(QF, f, &ffunc));
32749566063dSJacob Faibussowitsch         PetscCall(PetscQuadratureGetData(ffunc, NULL, &NqcF, &NpF, &fqpoints, &fqweights));
327563a3b9bcSJacob Faibussowitsch         PetscCheck(NqcF == NcF, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of quadrature components %" PetscInt_FMT " must match number of field components %" PetscInt_FMT, NqcF, NcF);
32767c927364SMatthew G. Knepley         if (NpC != NpF) continue;
32777c927364SMatthew G. Knepley         for (d = 0; d < dim; ++d) sum += PetscAbsReal(cqpoints[d] - fqpoints[d]);
32787c927364SMatthew G. Knepley         if (sum > 1.0e-9) continue;
3279d172c84bSMatthew G. Knepley         for (d = 0; d < NcC; ++d) sum += PetscAbsReal(cqweights[d] * fqweights[d]);
3280d172c84bSMatthew G. Knepley         if (sum < 1.0e-9) continue;
3281d172c84bSMatthew G. Knepley         cmap[offsetC + c] = offsetF + f;
328297c42addSMatthew G. Knepley         found             = PETSC_TRUE;
32837c927364SMatthew G. Knepley         break;
32847c927364SMatthew G. Knepley       }
328597c42addSMatthew G. Knepley       if (!found) {
328697c42addSMatthew G. Knepley         /* TODO We really want the average here, but some asshole put VecScatter in the interface */
3287d172c84bSMatthew G. Knepley         if (fvRef[field] || (feRef[field] && order == 0)) {
3288d172c84bSMatthew G. Knepley           cmap[offsetC + c] = offsetF + 0;
328997c42addSMatthew G. Knepley         } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Could not locate matching functional for injection");
329097c42addSMatthew G. Knepley       }
32917c927364SMatthew G. Knepley     }
3292d172c84bSMatthew G. Knepley     offsetC += cpdim;
3293d172c84bSMatthew G. Knepley     offsetF += fpdim;
32947c927364SMatthew G. Knepley   }
32959371c9d4SSatish Balay   for (f = 0; f < Nf; ++f) {
32969371c9d4SSatish Balay     PetscCall(PetscFEDestroy(&feRef[f]));
32979371c9d4SSatish Balay     PetscCall(PetscFVDestroy(&fvRef[f]));
32989371c9d4SSatish Balay   }
32999566063dSJacob Faibussowitsch   PetscCall(PetscFree3(feRef, fvRef, needAvg));
33007c927364SMatthew G. Knepley 
33019566063dSJacob Faibussowitsch   PetscCall(DMGetGlobalVector(dmf, &fv));
33029566063dSJacob Faibussowitsch   PetscCall(DMGetGlobalVector(dmc, &cv));
33039566063dSJacob Faibussowitsch   PetscCall(VecGetOwnershipRange(cv, &startC, &endC));
33049566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetConstrainedStorageSize(cglobalSection, &m));
33059566063dSJacob Faibussowitsch   PetscCall(PetscMalloc2(cTotDim, &cellCIndices, fTotDim, &cellFIndices));
33069566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(m, &cindices));
33079566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(m, &findices));
33087c927364SMatthew G. Knepley   for (d = 0; d < m; ++d) cindices[d] = findices[d] = -1;
33097c927364SMatthew G. Knepley   for (c = cStart; c < cEnd; ++c) {
33109566063dSJacob Faibussowitsch     PetscCall(DMPlexMatGetClosureIndicesRefined(dmf, fsection, fglobalSection, dmc, csection, cglobalSection, c, cellCIndices, cellFIndices));
33117c927364SMatthew G. Knepley     for (d = 0; d < cTotDim; ++d) {
33120bd915a7SMatthew G. Knepley       if ((cellCIndices[d] < startC) || (cellCIndices[d] >= endC)) continue;
331363a3b9bcSJacob Faibussowitsch       PetscCheck(!(findices[cellCIndices[d] - startC] >= 0) || !(findices[cellCIndices[d] - startC] != cellFIndices[cmap[d]]), PETSC_COMM_SELF, PETSC_ERR_PLIB, "Coarse dof %" PetscInt_FMT " maps to both %" PetscInt_FMT " and %" PetscInt_FMT, cindices[cellCIndices[d] - startC], findices[cellCIndices[d] - startC], cellFIndices[cmap[d]]);
33147c927364SMatthew G. Knepley       cindices[cellCIndices[d] - startC] = cellCIndices[d];
33157c927364SMatthew G. Knepley       findices[cellCIndices[d] - startC] = cellFIndices[cmap[d]];
33167c927364SMatthew G. Knepley     }
33177c927364SMatthew G. Knepley   }
33189566063dSJacob Faibussowitsch   PetscCall(PetscFree(cmap));
33199566063dSJacob Faibussowitsch   PetscCall(PetscFree2(cellCIndices, cellFIndices));
33207c927364SMatthew G. Knepley 
33219566063dSJacob Faibussowitsch   PetscCall(ISCreateGeneral(PETSC_COMM_SELF, m, cindices, PETSC_OWN_POINTER, &cis));
33229566063dSJacob Faibussowitsch   PetscCall(ISCreateGeneral(PETSC_COMM_SELF, m, findices, PETSC_OWN_POINTER, &fis));
33239566063dSJacob Faibussowitsch   PetscCall(VecScatterCreate(cv, cis, fv, fis, sc));
33249566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&cis));
33259566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&fis));
33269566063dSJacob Faibussowitsch   PetscCall(DMRestoreGlobalVector(dmf, &fv));
33279566063dSJacob Faibussowitsch   PetscCall(DMRestoreGlobalVector(dmc, &cv));
33289566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(DMPLEX_InjectorFEM, dmc, dmf, 0, 0));
33293ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3330cb1e1211SMatthew G Knepley }
3331a1cf66bbSMatthew G. Knepley 
33322f856554SMatthew G. Knepley /*@C
33332f856554SMatthew G. Knepley   DMPlexGetCellFields - Retrieve the field values values for a chunk of cells
33342f856554SMatthew G. Knepley 
33352f856554SMatthew G. Knepley   Input Parameters:
3336a1cb98faSBarry Smith + dm     - The `DM`
33372f856554SMatthew G. Knepley . cellIS - The cells to include
33382f856554SMatthew G. Knepley . locX   - A local vector with the solution fields
33392f856554SMatthew G. Knepley . locX_t - A local vector with solution field time derivatives, or NULL
33402f856554SMatthew G. Knepley - locA   - A local vector with auxiliary fields, or NULL
33412f856554SMatthew G. Knepley 
33422f856554SMatthew G. Knepley   Output Parameters:
33432f856554SMatthew G. Knepley + u   - The field coefficients
33442f856554SMatthew G. Knepley . u_t - The fields derivative coefficients
33452f856554SMatthew G. Knepley - a   - The auxiliary field coefficients
33462f856554SMatthew G. Knepley 
33472f856554SMatthew G. Knepley   Level: developer
33482f856554SMatthew G. Knepley 
33491cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexGetFaceFields()`
33502f856554SMatthew G. Knepley @*/
3351d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexGetCellFields(DM dm, IS cellIS, Vec locX, Vec locX_t, Vec locA, PetscScalar **u, PetscScalar **u_t, PetscScalar **a)
3352d71ae5a4SJacob Faibussowitsch {
33532f856554SMatthew G. Knepley   DM              plex, plexA = NULL;
3354a6e0b375SMatthew G. Knepley   DMEnclosureType encAux;
33552f856554SMatthew G. Knepley   PetscSection    section, sectionAux;
33562f856554SMatthew G. Knepley   PetscDS         prob;
33572f856554SMatthew G. Knepley   const PetscInt *cells;
33582f856554SMatthew G. Knepley   PetscInt        cStart, cEnd, numCells, totDim, totDimAux, c;
33592f856554SMatthew G. Knepley 
33602f856554SMatthew G. Knepley   PetscFunctionBegin;
33612f856554SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
3362064a246eSJacob Faibussowitsch   PetscValidHeaderSpecific(locX, VEC_CLASSID, 3);
3363ad540459SPierre Jolivet   if (locX_t) PetscValidHeaderSpecific(locX_t, VEC_CLASSID, 4);
3364ad540459SPierre Jolivet   if (locA) PetscValidHeaderSpecific(locA, VEC_CLASSID, 5);
33654f572ea9SToby Isaac   PetscAssertPointer(u, 6);
33664f572ea9SToby Isaac   PetscAssertPointer(u_t, 7);
33674f572ea9SToby Isaac   PetscAssertPointer(a, 8);
33689566063dSJacob Faibussowitsch   PetscCall(DMPlexConvertPlex(dm, &plex, PETSC_FALSE));
33699566063dSJacob Faibussowitsch   PetscCall(ISGetPointRange(cellIS, &cStart, &cEnd, &cells));
33709566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dm, &section));
337107218a29SMatthew G. Knepley   PetscCall(DMGetCellDS(dm, cells ? cells[cStart] : cStart, &prob, NULL));
33729566063dSJacob Faibussowitsch   PetscCall(PetscDSGetTotalDimension(prob, &totDim));
33732f856554SMatthew G. Knepley   if (locA) {
33742f856554SMatthew G. Knepley     DM      dmAux;
33752f856554SMatthew G. Knepley     PetscDS probAux;
33762f856554SMatthew G. Knepley 
33779566063dSJacob Faibussowitsch     PetscCall(VecGetDM(locA, &dmAux));
33789566063dSJacob Faibussowitsch     PetscCall(DMGetEnclosureRelation(dmAux, dm, &encAux));
33799566063dSJacob Faibussowitsch     PetscCall(DMPlexConvertPlex(dmAux, &plexA, PETSC_FALSE));
33809566063dSJacob Faibussowitsch     PetscCall(DMGetLocalSection(dmAux, &sectionAux));
33819566063dSJacob Faibussowitsch     PetscCall(DMGetDS(dmAux, &probAux));
33829566063dSJacob Faibussowitsch     PetscCall(PetscDSGetTotalDimension(probAux, &totDimAux));
33832f856554SMatthew G. Knepley   }
33842f856554SMatthew G. Knepley   numCells = cEnd - cStart;
33859566063dSJacob Faibussowitsch   PetscCall(DMGetWorkArray(dm, numCells * totDim, MPIU_SCALAR, u));
33869371c9d4SSatish Balay   if (locX_t) PetscCall(DMGetWorkArray(dm, numCells * totDim, MPIU_SCALAR, u_t));
3387ad540459SPierre Jolivet   else *u_t = NULL;
33889371c9d4SSatish Balay   if (locA) PetscCall(DMGetWorkArray(dm, numCells * totDimAux, MPIU_SCALAR, a));
3389ad540459SPierre Jolivet   else *a = NULL;
33902f856554SMatthew G. Knepley   for (c = cStart; c < cEnd; ++c) {
33912f856554SMatthew G. Knepley     const PetscInt cell = cells ? cells[c] : c;
33922f856554SMatthew G. Knepley     const PetscInt cind = c - cStart;
33932f856554SMatthew G. Knepley     PetscScalar   *x = NULL, *x_t = NULL, *ul = *u, *ul_t = *u_t, *al = *a;
33942f856554SMatthew G. Knepley     PetscInt       i;
33952f856554SMatthew G. Knepley 
33969566063dSJacob Faibussowitsch     PetscCall(DMPlexVecGetClosure(plex, section, locX, cell, NULL, &x));
33972f856554SMatthew G. Knepley     for (i = 0; i < totDim; ++i) ul[cind * totDim + i] = x[i];
33989566063dSJacob Faibussowitsch     PetscCall(DMPlexVecRestoreClosure(plex, section, locX, cell, NULL, &x));
33992f856554SMatthew G. Knepley     if (locX_t) {
34009566063dSJacob Faibussowitsch       PetscCall(DMPlexVecGetClosure(plex, section, locX_t, cell, NULL, &x_t));
34012f856554SMatthew G. Knepley       for (i = 0; i < totDim; ++i) ul_t[cind * totDim + i] = x_t[i];
34029566063dSJacob Faibussowitsch       PetscCall(DMPlexVecRestoreClosure(plex, section, locX_t, cell, NULL, &x_t));
34032f856554SMatthew G. Knepley     }
34042f856554SMatthew G. Knepley     if (locA) {
34052f856554SMatthew G. Knepley       PetscInt subcell;
34069566063dSJacob Faibussowitsch       PetscCall(DMGetEnclosurePoint(plexA, dm, encAux, cell, &subcell));
34079566063dSJacob Faibussowitsch       PetscCall(DMPlexVecGetClosure(plexA, sectionAux, locA, subcell, NULL, &x));
34082f856554SMatthew G. Knepley       for (i = 0; i < totDimAux; ++i) al[cind * totDimAux + i] = x[i];
34099566063dSJacob Faibussowitsch       PetscCall(DMPlexVecRestoreClosure(plexA, sectionAux, locA, subcell, NULL, &x));
34102f856554SMatthew G. Knepley     }
34112f856554SMatthew G. Knepley   }
34129566063dSJacob Faibussowitsch   PetscCall(DMDestroy(&plex));
34139566063dSJacob Faibussowitsch   if (locA) PetscCall(DMDestroy(&plexA));
34149566063dSJacob Faibussowitsch   PetscCall(ISRestorePointRange(cellIS, &cStart, &cEnd, &cells));
34153ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
34162f856554SMatthew G. Knepley }
34172f856554SMatthew G. Knepley 
34182f856554SMatthew G. Knepley /*@C
34192f856554SMatthew G. Knepley   DMPlexRestoreCellFields - Restore the field values values for a chunk of cells
34202f856554SMatthew G. Knepley 
34212f856554SMatthew G. Knepley   Input Parameters:
3422a1cb98faSBarry Smith + dm     - The `DM`
34232f856554SMatthew G. Knepley . cellIS - The cells to include
34242f856554SMatthew G. Knepley . locX   - A local vector with the solution fields
34252f856554SMatthew G. Knepley . locX_t - A local vector with solution field time derivatives, or NULL
34262f856554SMatthew G. Knepley - locA   - A local vector with auxiliary fields, or NULL
34272f856554SMatthew G. Knepley 
34282f856554SMatthew G. Knepley   Output Parameters:
34292f856554SMatthew G. Knepley + u   - The field coefficients
34302f856554SMatthew G. Knepley . u_t - The fields derivative coefficients
34312f856554SMatthew G. Knepley - a   - The auxiliary field coefficients
34322f856554SMatthew G. Knepley 
34332f856554SMatthew G. Knepley   Level: developer
34342f856554SMatthew G. Knepley 
34351cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexGetFaceFields()`
34362f856554SMatthew G. Knepley @*/
3437d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexRestoreCellFields(DM dm, IS cellIS, Vec locX, Vec locX_t, Vec locA, PetscScalar **u, PetscScalar **u_t, PetscScalar **a)
3438d71ae5a4SJacob Faibussowitsch {
34392f856554SMatthew G. Knepley   PetscFunctionBegin;
34409566063dSJacob Faibussowitsch   PetscCall(DMRestoreWorkArray(dm, 0, MPIU_SCALAR, u));
34419566063dSJacob Faibussowitsch   if (locX_t) PetscCall(DMRestoreWorkArray(dm, 0, MPIU_SCALAR, u_t));
34429566063dSJacob Faibussowitsch   if (locA) PetscCall(DMRestoreWorkArray(dm, 0, MPIU_SCALAR, a));
34433ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
34442f856554SMatthew G. Knepley }
34452f856554SMatthew G. Knepley 
3446*a4e35b19SJacob Faibussowitsch static PetscErrorCode DMPlexGetHybridCellFields(DM dm, IS cellIS, Vec locX, Vec locX_t, Vec locA, PetscScalar **u, PetscScalar **u_t, PetscScalar **a)
3447d71ae5a4SJacob Faibussowitsch {
344807218a29SMatthew G. Knepley   DM              plex, plexA = NULL;
344907218a29SMatthew G. Knepley   DMEnclosureType encAux;
345007218a29SMatthew G. Knepley   PetscSection    section, sectionAux;
345107218a29SMatthew G. Knepley   PetscDS         ds, dsIn;
34526528b96dSMatthew G. Knepley   const PetscInt *cells;
345307218a29SMatthew G. Knepley   PetscInt        cStart, cEnd, numCells, c, totDim, totDimAux, Nf, f;
34546528b96dSMatthew G. Knepley 
34556528b96dSMatthew G. Knepley   PetscFunctionBegin;
345607218a29SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
345707218a29SMatthew G. Knepley   PetscValidHeaderSpecific(cellIS, IS_CLASSID, 2);
345807218a29SMatthew G. Knepley   PetscValidHeaderSpecific(locX, VEC_CLASSID, 3);
345907218a29SMatthew G. Knepley   if (locX_t) { PetscValidHeaderSpecific(locX_t, VEC_CLASSID, 4); }
346007218a29SMatthew G. Knepley   if (locA) { PetscValidHeaderSpecific(locA, VEC_CLASSID, 5); }
34614f572ea9SToby Isaac   PetscAssertPointer(u, 6);
34624f572ea9SToby Isaac   PetscAssertPointer(u_t, 7);
34634f572ea9SToby Isaac   PetscAssertPointer(a, 8);
346407218a29SMatthew G. Knepley   PetscCall(ISGetPointRange(cellIS, &cStart, &cEnd, &cells));
346507218a29SMatthew G. Knepley   numCells = cEnd - cStart;
346607218a29SMatthew G. Knepley   PetscCall(DMPlexConvertPlex(dm, &plex, PETSC_FALSE));
346707218a29SMatthew G. Knepley   PetscCall(DMGetLocalSection(dm, &section));
346807218a29SMatthew G. Knepley   PetscCall(DMGetCellDS(dm, cells ? cells[cStart] : cStart, &ds, &dsIn));
346907218a29SMatthew G. Knepley   PetscCall(PetscDSGetNumFields(dsIn, &Nf));
347007218a29SMatthew G. Knepley   PetscCall(PetscDSGetTotalDimension(dsIn, &totDim));
347107218a29SMatthew G. Knepley   if (locA) {
347207218a29SMatthew G. Knepley     DM      dmAux;
347307218a29SMatthew G. Knepley     PetscDS probAux;
347407218a29SMatthew G. Knepley 
347507218a29SMatthew G. Knepley     PetscCall(VecGetDM(locA, &dmAux));
347607218a29SMatthew G. Knepley     PetscCall(DMGetEnclosureRelation(dmAux, dm, &encAux));
347707218a29SMatthew G. Knepley     PetscCall(DMPlexConvertPlex(dmAux, &plexA, PETSC_FALSE));
347807218a29SMatthew G. Knepley     PetscCall(DMGetLocalSection(dmAux, &sectionAux));
347907218a29SMatthew G. Knepley     PetscCall(DMGetDS(dmAux, &probAux));
348007218a29SMatthew G. Knepley     PetscCall(PetscDSGetTotalDimension(probAux, &totDimAux));
348107218a29SMatthew G. Knepley   }
348207218a29SMatthew G. Knepley   PetscCall(DMGetWorkArray(dm, numCells * totDim, MPIU_SCALAR, u));
348307218a29SMatthew G. Knepley   if (locX_t) PetscCall(DMGetWorkArray(dm, numCells * totDim, MPIU_SCALAR, u_t));
348407218a29SMatthew G. Knepley   else {
348507218a29SMatthew G. Knepley     *u_t = NULL;
348607218a29SMatthew G. Knepley   }
348707218a29SMatthew G. Knepley   if (locA) PetscCall(DMGetWorkArray(dm, numCells * totDimAux, MPIU_SCALAR, a));
348807218a29SMatthew G. Knepley   else {
348907218a29SMatthew G. Knepley     *a = NULL;
349007218a29SMatthew G. Knepley   }
349107218a29SMatthew G. Knepley   // Loop over cohesive cells
349207218a29SMatthew G. Knepley   for (c = cStart; c < cEnd; ++c) {
349307218a29SMatthew G. Knepley     const PetscInt  cell = cells ? cells[c] : c;
349407218a29SMatthew G. Knepley     const PetscInt  cind = c - cStart;
349574a0c561SMatthew G. Knepley     PetscScalar    *xf = NULL, *xc = NULL, *x = NULL, *xf_t = NULL, *xc_t = NULL;
349674a0c561SMatthew G. Knepley     PetscScalar    *ul = &(*u)[cind * totDim], *ul_t = u_t ? &(*u_t)[cind * totDim] : NULL;
349707218a29SMatthew G. Knepley     const PetscInt *cone, *ornt;
349807218a29SMatthew G. Knepley     PetscInt        Nx = 0, Nxf, s;
349907218a29SMatthew G. Knepley 
350007218a29SMatthew G. Knepley     PetscCall(DMPlexGetCone(dm, cell, &cone));
350107218a29SMatthew G. Knepley     PetscCall(DMPlexGetConeOrientation(dm, cell, &ornt));
350207218a29SMatthew G. Knepley     // Put in cohesive unknowns
350307218a29SMatthew G. Knepley     PetscCall(DMPlexVecGetClosure(plex, section, locX, cell, &Nxf, &xf));
350474a0c561SMatthew G. Knepley     if (locX_t) PetscCall(DMPlexVecGetClosure(plex, section, locX_t, cell, NULL, &xf_t));
350507218a29SMatthew G. Knepley     for (f = 0; f < Nf; ++f) {
350607218a29SMatthew G. Knepley       PetscInt  fdofIn, foff, foffIn;
350707218a29SMatthew G. Knepley       PetscBool cohesive;
350807218a29SMatthew G. Knepley 
350907218a29SMatthew G. Knepley       PetscCall(PetscDSGetCohesive(dsIn, f, &cohesive));
351007218a29SMatthew G. Knepley       if (!cohesive) continue;
351107218a29SMatthew G. Knepley       PetscCall(PetscDSGetFieldSize(dsIn, f, &fdofIn));
351207218a29SMatthew G. Knepley       PetscCall(PetscDSGetFieldOffsetCohesive(ds, f, &foff));
351307218a29SMatthew G. Knepley       PetscCall(PetscDSGetFieldOffsetCohesive(dsIn, f, &foffIn));
351407218a29SMatthew G. Knepley       for (PetscInt i = 0; i < fdofIn; ++i) ul[foffIn + i] = xf[foff + i];
351574a0c561SMatthew G. Knepley       if (locX_t)
351674a0c561SMatthew G. Knepley         for (PetscInt i = 0; i < fdofIn; ++i) ul_t[foffIn + i] = xf_t[foff + i];
351707218a29SMatthew G. Knepley       Nx += fdofIn;
351807218a29SMatthew G. Knepley     }
351907218a29SMatthew G. Knepley     PetscCall(DMPlexVecRestoreClosure(plex, section, locX, cell, &Nxf, &xf));
352074a0c561SMatthew G. Knepley     if (locX_t) PetscCall(DMPlexVecRestoreClosure(plex, section, locX_t, cell, NULL, &xf_t));
352107218a29SMatthew G. Knepley     // Loop over sides of surface
352207218a29SMatthew G. Knepley     for (s = 0; s < 2; ++s) {
352307218a29SMatthew G. Knepley       const PetscInt *support;
352407218a29SMatthew G. Knepley       const PetscInt  face = cone[s];
352507218a29SMatthew G. Knepley       PetscInt        ssize, ncell, Nxc;
352607218a29SMatthew G. Knepley 
352707218a29SMatthew G. Knepley       // I don't think I need the face to have 0 orientation in the hybrid cell
352807218a29SMatthew G. Knepley       //PetscCheck(!ornt[s], PETSC_COMM_SELF, PETSC_ERR_SUP, "Face %" PetscInt_FMT " in hybrid cell %" PetscInt_FMT " has orientation %" PetscInt_FMT " != 0", face, cell, ornt[s]);
352907218a29SMatthew G. Knepley       PetscCall(DMPlexGetSupport(dm, face, &support));
353007218a29SMatthew G. Knepley       PetscCall(DMPlexGetSupportSize(dm, face, &ssize));
353107218a29SMatthew G. Knepley       if (support[0] == cell) ncell = support[1];
353207218a29SMatthew G. Knepley       else if (support[1] == cell) ncell = support[0];
353307218a29SMatthew G. Knepley       else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Face %" PetscInt_FMT " does not have cell %" PetscInt_FMT " in its support", face, cell);
353407218a29SMatthew G. Knepley       // Get closure of both face and cell, stick in cell for normal fields and face for cohesive fields
353507218a29SMatthew G. Knepley       PetscCall(DMPlexVecGetClosure(plex, section, locX, ncell, &Nxc, &xc));
353674a0c561SMatthew G. Knepley       if (locX_t) PetscCall(DMPlexVecGetClosure(plex, section, locX_t, ncell, NULL, &xc_t));
353707218a29SMatthew G. Knepley       for (f = 0; f < Nf; ++f) {
353807218a29SMatthew G. Knepley         PetscInt  fdofIn, foffIn;
353907218a29SMatthew G. Knepley         PetscBool cohesive;
354007218a29SMatthew G. Knepley 
354107218a29SMatthew G. Knepley         PetscCall(PetscDSGetCohesive(dsIn, f, &cohesive));
354207218a29SMatthew G. Knepley         if (cohesive) continue;
354307218a29SMatthew G. Knepley         PetscCall(PetscDSGetFieldSize(dsIn, f, &fdofIn));
354407218a29SMatthew G. Knepley         PetscCall(PetscDSGetFieldOffsetCohesive(dsIn, f, &foffIn));
354507218a29SMatthew G. Knepley         for (PetscInt i = 0; i < fdofIn; ++i) ul[foffIn + s * fdofIn + i] = xc[foffIn + i];
354674a0c561SMatthew G. Knepley         if (locX_t)
354774a0c561SMatthew G. Knepley           for (PetscInt i = 0; i < fdofIn; ++i) ul_t[foffIn + s * fdofIn + i] = xc_t[foffIn + i];
354807218a29SMatthew G. Knepley         Nx += fdofIn;
354907218a29SMatthew G. Knepley       }
355007218a29SMatthew G. Knepley       PetscCall(DMPlexVecRestoreClosure(plex, section, locX, ncell, &Nxc, &xc));
355174a0c561SMatthew G. Knepley       if (locX_t) PetscCall(DMPlexVecRestoreClosure(plex, section, locX_t, ncell, NULL, &xc_t));
355207218a29SMatthew G. Knepley     }
355307218a29SMatthew G. Knepley     PetscCheck(Nx == totDim, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "Closure size %" PetscInt_FMT " for cell %" PetscInt_FMT " does not match DS size %" PetscInt_FMT, Nx, cell, totDim);
355407218a29SMatthew G. Knepley 
355507218a29SMatthew G. Knepley     if (locA) {
355607218a29SMatthew G. Knepley       PetscScalar *al = &(*a)[cind * totDimAux];
355707218a29SMatthew G. Knepley       PetscInt     subcell;
355807218a29SMatthew G. Knepley 
355907218a29SMatthew G. Knepley       PetscCall(DMGetEnclosurePoint(plexA, dm, encAux, cell, &subcell));
356007218a29SMatthew G. Knepley       PetscCall(DMPlexVecGetClosure(plexA, sectionAux, locA, subcell, &Nx, &x));
356107218a29SMatthew G. Knepley       PetscCheck(Nx == totDimAux, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "Closure size %" PetscInt_FMT " for subcell %" PetscInt_FMT "does not match DS size %" PetscInt_FMT, Nx, subcell, totDimAux);
356207218a29SMatthew G. Knepley       for (PetscInt i = 0; i < totDimAux; ++i) al[i] = x[i];
356307218a29SMatthew G. Knepley       PetscCall(DMPlexVecRestoreClosure(plexA, sectionAux, locA, subcell, &Nx, &x));
356407218a29SMatthew G. Knepley     }
356507218a29SMatthew G. Knepley   }
356607218a29SMatthew G. Knepley   PetscCall(DMDestroy(&plex));
356707218a29SMatthew G. Knepley   PetscCall(DMDestroy(&plexA));
356807218a29SMatthew G. Knepley   PetscCall(ISRestorePointRange(cellIS, &cStart, &cEnd, &cells));
356907218a29SMatthew G. Knepley   PetscFunctionReturn(PETSC_SUCCESS);
357007218a29SMatthew G. Knepley }
357107218a29SMatthew G. Knepley 
357207218a29SMatthew G. Knepley /*
35733e2b0218SMatthew G. Knepley   DMPlexGetHybridFields - Get the field values for the negative side (s = 0) and positive side (s = 1) of the interface
357407218a29SMatthew G. Knepley 
357507218a29SMatthew G. Knepley   Input Parameters:
357607218a29SMatthew G. Knepley + dm      - The full domain DM
357707218a29SMatthew G. Knepley . dmX     - An array of DM for the field, say an auxiliary DM, indexed by s
357807218a29SMatthew G. Knepley . dsX     - An array of PetscDS for the field, indexed by s
357907218a29SMatthew G. Knepley . cellIS  - The interface cells for which we want values
358007218a29SMatthew G. Knepley . locX    - An array of local vectors with the field values, indexed by s
358107218a29SMatthew G. Knepley - useCell - Flag to have values come from neighboring cell rather than endcap face
358207218a29SMatthew G. Knepley 
358307218a29SMatthew G. Knepley   Output Parameter:
358407218a29SMatthew G. Knepley . x       - An array of field values, indexed by s
358507218a29SMatthew G. Knepley 
358607218a29SMatthew G. Knepley   Note:
358776fbde31SPierre Jolivet   The arrays in `x` will be allocated using `DMGetWorkArray()`, and must be returned using `DMPlexRestoreHybridFields()`.
358807218a29SMatthew G. Knepley 
358907218a29SMatthew G. Knepley   Level: advanced
359007218a29SMatthew G. Knepley 
359176fbde31SPierre Jolivet .seealso: `DMPlexRestoreHybridFields()`, `DMGetWorkArray()`
359207218a29SMatthew G. Knepley */
359307218a29SMatthew G. Knepley static PetscErrorCode DMPlexGetHybridFields(DM dm, DM dmX[], PetscDS dsX[], IS cellIS, Vec locX[], PetscBool useCell, PetscScalar *x[])
359407218a29SMatthew G. Knepley {
359507218a29SMatthew G. Knepley   DM              plexX[2];
359607218a29SMatthew G. Knepley   DMEnclosureType encX[2];
359707218a29SMatthew G. Knepley   PetscSection    sectionX[2];
359807218a29SMatthew G. Knepley   const PetscInt *cells;
359907218a29SMatthew G. Knepley   PetscInt        cStart, cEnd, numCells, c, s, totDimX[2];
360007218a29SMatthew G. Knepley 
360107218a29SMatthew G. Knepley   PetscFunctionBegin;
36024f572ea9SToby Isaac   PetscAssertPointer(locX, 5);
360307218a29SMatthew G. Knepley   if (!locX[0] || !locX[1]) PetscFunctionReturn(PETSC_SUCCESS);
36044f572ea9SToby Isaac   PetscAssertPointer(dmX, 2);
36054f572ea9SToby Isaac   PetscAssertPointer(dsX, 3);
360607218a29SMatthew G. Knepley   PetscValidHeaderSpecific(cellIS, IS_CLASSID, 4);
36074f572ea9SToby Isaac   PetscAssertPointer(x, 7);
36089566063dSJacob Faibussowitsch   PetscCall(ISGetPointRange(cellIS, &cStart, &cEnd, &cells));
36096528b96dSMatthew G. Knepley   numCells = cEnd - cStart;
3610148442b3SMatthew G. Knepley   for (s = 0; s < 2; ++s) {
361107218a29SMatthew G. Knepley     PetscValidHeaderSpecific(dmX[s], DM_CLASSID, 2);
361207218a29SMatthew G. Knepley     PetscValidHeaderSpecific(dsX[s], PETSCDS_CLASSID, 3);
361307218a29SMatthew G. Knepley     PetscValidHeaderSpecific(locX[s], VEC_CLASSID, 5);
361407218a29SMatthew G. Knepley     PetscCall(DMPlexConvertPlex(dmX[s], &plexX[s], PETSC_FALSE));
361507218a29SMatthew G. Knepley     PetscCall(DMGetEnclosureRelation(dmX[s], dm, &encX[s]));
361607218a29SMatthew G. Knepley     PetscCall(DMGetLocalSection(dmX[s], &sectionX[s]));
361707218a29SMatthew G. Knepley     PetscCall(PetscDSGetTotalDimension(dsX[s], &totDimX[s]));
361807218a29SMatthew G. Knepley     PetscCall(DMGetWorkArray(dmX[s], numCells * totDimX[s], MPIU_SCALAR, &x[s]));
361904c51a94SMatthew G. Knepley   }
3620148442b3SMatthew G. Knepley   for (c = cStart; c < cEnd; ++c) {
36216528b96dSMatthew G. Knepley     const PetscInt  cell = cells ? cells[c] : c;
36226528b96dSMatthew G. Knepley     const PetscInt  cind = c - cStart;
36236528b96dSMatthew G. Knepley     const PetscInt *cone, *ornt;
36246528b96dSMatthew G. Knepley 
36259566063dSJacob Faibussowitsch     PetscCall(DMPlexGetCone(dm, cell, &cone));
36269566063dSJacob Faibussowitsch     PetscCall(DMPlexGetConeOrientation(dm, cell, &ornt));
362707218a29SMatthew G. Knepley     //PetscCheck(!ornt[0], PETSC_COMM_SELF, PETSC_ERR_SUP, "Face %" PetscInt_FMT " in hybrid cell %" PetscInt_FMT " has orientation %" PetscInt_FMT " != 0", cone[0], cell, ornt[0]);
3628148442b3SMatthew G. Knepley     for (s = 0; s < 2; ++s) {
362907218a29SMatthew G. Knepley       const PetscInt tdX     = totDimX[s];
363007218a29SMatthew G. Knepley       PetscScalar   *closure = NULL, *xl = &x[s][cind * tdX];
363107218a29SMatthew G. Knepley       PetscInt       face = cone[s], point = face, subpoint, Nx, i;
363207218a29SMatthew G. Knepley 
363307218a29SMatthew G. Knepley       if (useCell) {
36345fedec97SMatthew G. Knepley         const PetscInt *support;
363507218a29SMatthew G. Knepley         PetscInt        ssize;
36366528b96dSMatthew G. Knepley 
363707218a29SMatthew G. Knepley         PetscCall(DMPlexGetSupport(dm, face, &support));
363807218a29SMatthew G. Knepley         PetscCall(DMPlexGetSupportSize(dm, face, &ssize));
363907218a29SMatthew G. Knepley         PetscCheck(ssize == 2, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Face %" PetscInt_FMT " from cell %" PetscInt_FMT " has support size %" PetscInt_FMT " != 2", face, cell, ssize);
364007218a29SMatthew G. Knepley         if (support[0] == cell) point = support[1];
364107218a29SMatthew G. Knepley         else if (support[1] == cell) point = support[0];
364207218a29SMatthew G. Knepley         else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Face %" PetscInt_FMT " does not have cell %" PetscInt_FMT " in its support", face, cell);
364307218a29SMatthew G. Knepley       }
364407218a29SMatthew G. Knepley       PetscCall(DMGetEnclosurePoint(plexX[s], dm, encX[s], point, &subpoint));
364507218a29SMatthew G. Knepley       PetscCall(DMPlexVecGetOrientedClosure_Internal(plexX[s], sectionX[s], locX[s], subpoint, ornt[s], &Nx, &closure));
364607218a29SMatthew G. Knepley       PetscCheck(Nx == tdX, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "Closure size %" PetscInt_FMT " for subpoint %" PetscInt_FMT " does not match DS size %" PetscInt_FMT, Nx, subpoint, tdX);
364707218a29SMatthew G. Knepley       for (i = 0; i < Nx; ++i) xl[i] = closure[i];
364807218a29SMatthew G. Knepley       PetscCall(DMPlexVecRestoreClosure(plexX[s], sectionX[s], locX[s], subpoint, &Nx, &closure));
36496528b96dSMatthew G. Knepley     }
36506528b96dSMatthew G. Knepley   }
365107218a29SMatthew G. Knepley   for (s = 0; s < 2; ++s) PetscCall(DMDestroy(&plexX[s]));
36529566063dSJacob Faibussowitsch   PetscCall(ISRestorePointRange(cellIS, &cStart, &cEnd, &cells));
36533ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
36546528b96dSMatthew G. Knepley }
36556528b96dSMatthew G. Knepley 
365607218a29SMatthew G. Knepley static PetscErrorCode DMPlexRestoreHybridFields(DM dm, DM dmX[], PetscDS dsX[], IS cellIS, Vec locX[], PetscBool useCell, PetscScalar *x[])
3657d71ae5a4SJacob Faibussowitsch {
36586528b96dSMatthew G. Knepley   PetscFunctionBegin;
365907218a29SMatthew G. Knepley   if (!locX[0] || !locX[1]) PetscFunctionReturn(PETSC_SUCCESS);
366007218a29SMatthew G. Knepley   PetscCall(DMRestoreWorkArray(dmX[0], 0, MPIU_SCALAR, &x[0]));
366107218a29SMatthew G. Knepley   PetscCall(DMRestoreWorkArray(dmX[1], 0, MPIU_SCALAR, &x[1]));
36623ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
36636528b96dSMatthew G. Knepley }
36646528b96dSMatthew G. Knepley 
36652f856554SMatthew G. Knepley /*@C
36662f856554SMatthew G. Knepley   DMPlexGetFaceFields - Retrieve the field values values for a chunk of faces
36672f856554SMatthew G. Knepley 
36682f856554SMatthew G. Knepley   Input Parameters:
3669a1cb98faSBarry Smith + dm           - The `DM`
36702f856554SMatthew G. Knepley . fStart       - The first face to include
36712f856554SMatthew G. Knepley . fEnd         - The first face to exclude
36722f856554SMatthew G. Knepley . locX         - A local vector with the solution fields
36732f856554SMatthew G. Knepley . locX_t       - A local vector with solution field time derivatives, or NULL
36742f856554SMatthew G. Knepley . faceGeometry - A local vector with face geometry
36752f856554SMatthew G. Knepley . cellGeometry - A local vector with cell geometry
367660225df5SJacob Faibussowitsch - locGrad      - A local vector with field gradients, or NULL
36772f856554SMatthew G. Knepley 
36782f856554SMatthew G. Knepley   Output Parameters:
36792f856554SMatthew G. Knepley + Nface - The number of faces with field values
36802f856554SMatthew G. Knepley . uL    - The field values at the left side of the face
36812f856554SMatthew G. Knepley - uR    - The field values at the right side of the face
36822f856554SMatthew G. Knepley 
36832f856554SMatthew G. Knepley   Level: developer
36842f856554SMatthew G. Knepley 
36851cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexGetCellFields()`
36862f856554SMatthew G. Knepley @*/
3687d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexGetFaceFields(DM dm, PetscInt fStart, PetscInt fEnd, Vec locX, Vec locX_t, Vec faceGeometry, Vec cellGeometry, Vec locGrad, PetscInt *Nface, PetscScalar **uL, PetscScalar **uR)
3688d71ae5a4SJacob Faibussowitsch {
36892f856554SMatthew G. Knepley   DM                 dmFace, dmCell, dmGrad = NULL;
36902f856554SMatthew G. Knepley   PetscSection       section;
36912f856554SMatthew G. Knepley   PetscDS            prob;
36922f856554SMatthew G. Knepley   DMLabel            ghostLabel;
36932f856554SMatthew G. Knepley   const PetscScalar *facegeom, *cellgeom, *x, *lgrad;
36942f856554SMatthew G. Knepley   PetscBool         *isFE;
36952f856554SMatthew G. Knepley   PetscInt           dim, Nf, f, Nc, numFaces = fEnd - fStart, iface, face;
36962f856554SMatthew G. Knepley 
36972f856554SMatthew G. Knepley   PetscFunctionBegin;
36982f856554SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
36992f856554SMatthew G. Knepley   PetscValidHeaderSpecific(locX, VEC_CLASSID, 4);
3700ad540459SPierre Jolivet   if (locX_t) PetscValidHeaderSpecific(locX_t, VEC_CLASSID, 5);
37012f856554SMatthew G. Knepley   PetscValidHeaderSpecific(faceGeometry, VEC_CLASSID, 6);
37022f856554SMatthew G. Knepley   PetscValidHeaderSpecific(cellGeometry, VEC_CLASSID, 7);
3703ad540459SPierre Jolivet   if (locGrad) PetscValidHeaderSpecific(locGrad, VEC_CLASSID, 8);
37044f572ea9SToby Isaac   PetscAssertPointer(uL, 10);
37054f572ea9SToby Isaac   PetscAssertPointer(uR, 11);
37069566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dm, &dim));
37079566063dSJacob Faibussowitsch   PetscCall(DMGetDS(dm, &prob));
37089566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dm, &section));
37099566063dSJacob Faibussowitsch   PetscCall(PetscDSGetNumFields(prob, &Nf));
37109566063dSJacob Faibussowitsch   PetscCall(PetscDSGetTotalComponents(prob, &Nc));
37119566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(Nf, &isFE));
37122f856554SMatthew G. Knepley   for (f = 0; f < Nf; ++f) {
37132f856554SMatthew G. Knepley     PetscObject  obj;
37142f856554SMatthew G. Knepley     PetscClassId id;
37152f856554SMatthew G. Knepley 
37169566063dSJacob Faibussowitsch     PetscCall(PetscDSGetDiscretization(prob, f, &obj));
37179566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetClassId(obj, &id));
37189371c9d4SSatish Balay     if (id == PETSCFE_CLASSID) {
37199371c9d4SSatish Balay       isFE[f] = PETSC_TRUE;
37209371c9d4SSatish Balay     } else if (id == PETSCFV_CLASSID) {
37219371c9d4SSatish Balay       isFE[f] = PETSC_FALSE;
37229371c9d4SSatish Balay     } else {
37239371c9d4SSatish Balay       isFE[f] = PETSC_FALSE;
37249371c9d4SSatish Balay     }
37252f856554SMatthew G. Knepley   }
37269566063dSJacob Faibussowitsch   PetscCall(DMGetLabel(dm, "ghost", &ghostLabel));
37279566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(locX, &x));
37289566063dSJacob Faibussowitsch   PetscCall(VecGetDM(faceGeometry, &dmFace));
37299566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(faceGeometry, &facegeom));
37309566063dSJacob Faibussowitsch   PetscCall(VecGetDM(cellGeometry, &dmCell));
37319566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(cellGeometry, &cellgeom));
37322f856554SMatthew G. Knepley   if (locGrad) {
37339566063dSJacob Faibussowitsch     PetscCall(VecGetDM(locGrad, &dmGrad));
37349566063dSJacob Faibussowitsch     PetscCall(VecGetArrayRead(locGrad, &lgrad));
37352f856554SMatthew G. Knepley   }
37369566063dSJacob Faibussowitsch   PetscCall(DMGetWorkArray(dm, numFaces * Nc, MPIU_SCALAR, uL));
37379566063dSJacob Faibussowitsch   PetscCall(DMGetWorkArray(dm, numFaces * Nc, MPIU_SCALAR, uR));
37382f856554SMatthew G. Knepley   /* Right now just eat the extra work for FE (could make a cell loop) */
37392f856554SMatthew G. Knepley   for (face = fStart, iface = 0; face < fEnd; ++face) {
37402f856554SMatthew G. Knepley     const PetscInt  *cells;
37412f856554SMatthew G. Knepley     PetscFVFaceGeom *fg;
37422f856554SMatthew G. Knepley     PetscFVCellGeom *cgL, *cgR;
37432f856554SMatthew G. Knepley     PetscScalar     *xL, *xR, *gL, *gR;
37442f856554SMatthew G. Knepley     PetscScalar     *uLl = *uL, *uRl = *uR;
37452f856554SMatthew G. Knepley     PetscInt         ghost, nsupp, nchild;
37462f856554SMatthew G. Knepley 
37479566063dSJacob Faibussowitsch     PetscCall(DMLabelGetValue(ghostLabel, face, &ghost));
37489566063dSJacob Faibussowitsch     PetscCall(DMPlexGetSupportSize(dm, face, &nsupp));
37499566063dSJacob Faibussowitsch     PetscCall(DMPlexGetTreeChildren(dm, face, &nchild, NULL));
37502f856554SMatthew G. Knepley     if (ghost >= 0 || nsupp > 2 || nchild > 0) continue;
37519566063dSJacob Faibussowitsch     PetscCall(DMPlexPointLocalRead(dmFace, face, facegeom, &fg));
37529566063dSJacob Faibussowitsch     PetscCall(DMPlexGetSupport(dm, face, &cells));
37539566063dSJacob Faibussowitsch     PetscCall(DMPlexPointLocalRead(dmCell, cells[0], cellgeom, &cgL));
37549566063dSJacob Faibussowitsch     PetscCall(DMPlexPointLocalRead(dmCell, cells[1], cellgeom, &cgR));
37552f856554SMatthew G. Knepley     for (f = 0; f < Nf; ++f) {
37562f856554SMatthew G. Knepley       PetscInt off;
37572f856554SMatthew G. Knepley 
37589566063dSJacob Faibussowitsch       PetscCall(PetscDSGetComponentOffset(prob, f, &off));
37592f856554SMatthew G. Knepley       if (isFE[f]) {
37602f856554SMatthew G. Knepley         const PetscInt *cone;
37612f856554SMatthew G. Knepley         PetscInt        comp, coneSizeL, coneSizeR, faceLocL, faceLocR, ldof, rdof, d;
37622f856554SMatthew G. Knepley 
37632f856554SMatthew G. Knepley         xL = xR = NULL;
37649566063dSJacob Faibussowitsch         PetscCall(PetscSectionGetFieldComponents(section, f, &comp));
37659566063dSJacob Faibussowitsch         PetscCall(DMPlexVecGetClosure(dm, section, locX, cells[0], &ldof, (PetscScalar **)&xL));
37669566063dSJacob Faibussowitsch         PetscCall(DMPlexVecGetClosure(dm, section, locX, cells[1], &rdof, (PetscScalar **)&xR));
37679566063dSJacob Faibussowitsch         PetscCall(DMPlexGetCone(dm, cells[0], &cone));
37689566063dSJacob Faibussowitsch         PetscCall(DMPlexGetConeSize(dm, cells[0], &coneSizeL));
37699371c9d4SSatish Balay         for (faceLocL = 0; faceLocL < coneSizeL; ++faceLocL)
37709371c9d4SSatish Balay           if (cone[faceLocL] == face) break;
37719566063dSJacob Faibussowitsch         PetscCall(DMPlexGetCone(dm, cells[1], &cone));
37729566063dSJacob Faibussowitsch         PetscCall(DMPlexGetConeSize(dm, cells[1], &coneSizeR));
37739371c9d4SSatish Balay         for (faceLocR = 0; faceLocR < coneSizeR; ++faceLocR)
37749371c9d4SSatish Balay           if (cone[faceLocR] == face) break;
37751dca8a05SBarry Smith         PetscCheck(faceLocL != coneSizeL || faceLocR != coneSizeR, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Could not find face %" PetscInt_FMT " in cone of cell %" PetscInt_FMT " or cell %" PetscInt_FMT, face, cells[0], cells[1]);
37762f856554SMatthew G. Knepley         /* Check that FEM field has values in the right cell (sometimes its an FV ghost cell) */
37772f856554SMatthew G. Knepley         /* TODO: this is a hack that might not be right for nonconforming */
37782f856554SMatthew G. Knepley         if (faceLocL < coneSizeL) {
37799566063dSJacob Faibussowitsch           PetscCall(PetscFEEvaluateFaceFields_Internal(prob, f, faceLocL, xL, &uLl[iface * Nc + off]));
37809566063dSJacob Faibussowitsch           if (rdof == ldof && faceLocR < coneSizeR) PetscCall(PetscFEEvaluateFaceFields_Internal(prob, f, faceLocR, xR, &uRl[iface * Nc + off]));
37812f856554SMatthew G. Knepley           else {
37829371c9d4SSatish Balay             for (d = 0; d < comp; ++d) uRl[iface * Nc + off + d] = uLl[iface * Nc + off + d];
37839371c9d4SSatish Balay           }
37849371c9d4SSatish Balay         } else {
37859566063dSJacob Faibussowitsch           PetscCall(PetscFEEvaluateFaceFields_Internal(prob, f, faceLocR, xR, &uRl[iface * Nc + off]));
37869566063dSJacob Faibussowitsch           PetscCall(PetscSectionGetFieldComponents(section, f, &comp));
37872f856554SMatthew G. Knepley           for (d = 0; d < comp; ++d) uLl[iface * Nc + off + d] = uRl[iface * Nc + off + d];
37882f856554SMatthew G. Knepley         }
37899566063dSJacob Faibussowitsch         PetscCall(DMPlexVecRestoreClosure(dm, section, locX, cells[0], &ldof, (PetscScalar **)&xL));
37909566063dSJacob Faibussowitsch         PetscCall(DMPlexVecRestoreClosure(dm, section, locX, cells[1], &rdof, (PetscScalar **)&xR));
37912f856554SMatthew G. Knepley       } else {
37922f856554SMatthew G. Knepley         PetscFV  fv;
37932f856554SMatthew G. Knepley         PetscInt numComp, c;
37942f856554SMatthew G. Knepley 
37959566063dSJacob Faibussowitsch         PetscCall(PetscDSGetDiscretization(prob, f, (PetscObject *)&fv));
37969566063dSJacob Faibussowitsch         PetscCall(PetscFVGetNumComponents(fv, &numComp));
37979566063dSJacob Faibussowitsch         PetscCall(DMPlexPointLocalFieldRead(dm, cells[0], f, x, &xL));
37989566063dSJacob Faibussowitsch         PetscCall(DMPlexPointLocalFieldRead(dm, cells[1], f, x, &xR));
37992f856554SMatthew G. Knepley         if (dmGrad) {
38002f856554SMatthew G. Knepley           PetscReal dxL[3], dxR[3];
38012f856554SMatthew G. Knepley 
38029566063dSJacob Faibussowitsch           PetscCall(DMPlexPointLocalRead(dmGrad, cells[0], lgrad, &gL));
38039566063dSJacob Faibussowitsch           PetscCall(DMPlexPointLocalRead(dmGrad, cells[1], lgrad, &gR));
38042f856554SMatthew G. Knepley           DMPlex_WaxpyD_Internal(dim, -1, cgL->centroid, fg->centroid, dxL);
38052f856554SMatthew G. Knepley           DMPlex_WaxpyD_Internal(dim, -1, cgR->centroid, fg->centroid, dxR);
38062f856554SMatthew G. Knepley           for (c = 0; c < numComp; ++c) {
38072f856554SMatthew G. Knepley             uLl[iface * Nc + off + c] = xL[c] + DMPlex_DotD_Internal(dim, &gL[c * dim], dxL);
38082f856554SMatthew G. Knepley             uRl[iface * Nc + off + c] = xR[c] + DMPlex_DotD_Internal(dim, &gR[c * dim], dxR);
38092f856554SMatthew G. Knepley           }
38102f856554SMatthew G. Knepley         } else {
38112f856554SMatthew G. Knepley           for (c = 0; c < numComp; ++c) {
38122f856554SMatthew G. Knepley             uLl[iface * Nc + off + c] = xL[c];
38132f856554SMatthew G. Knepley             uRl[iface * Nc + off + c] = xR[c];
38142f856554SMatthew G. Knepley           }
38152f856554SMatthew G. Knepley         }
38162f856554SMatthew G. Knepley       }
38172f856554SMatthew G. Knepley     }
38182f856554SMatthew G. Knepley     ++iface;
38192f856554SMatthew G. Knepley   }
38202f856554SMatthew G. Knepley   *Nface = iface;
38219566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(locX, &x));
38229566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(faceGeometry, &facegeom));
38239566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(cellGeometry, &cellgeom));
382448a46eb9SPierre Jolivet   if (locGrad) PetscCall(VecRestoreArrayRead(locGrad, &lgrad));
38259566063dSJacob Faibussowitsch   PetscCall(PetscFree(isFE));
38263ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
38272f856554SMatthew G. Knepley }
38282f856554SMatthew G. Knepley 
38292f856554SMatthew G. Knepley /*@C
38302f856554SMatthew G. Knepley   DMPlexRestoreFaceFields - Restore the field values values for a chunk of faces
38312f856554SMatthew G. Knepley 
38322f856554SMatthew G. Knepley   Input Parameters:
3833a1cb98faSBarry Smith + dm           - The `DM`
38342f856554SMatthew G. Knepley . fStart       - The first face to include
38352f856554SMatthew G. Knepley . fEnd         - The first face to exclude
38362f856554SMatthew G. Knepley . locX         - A local vector with the solution fields
38372f856554SMatthew G. Knepley . locX_t       - A local vector with solution field time derivatives, or NULL
38382f856554SMatthew G. Knepley . faceGeometry - A local vector with face geometry
38392f856554SMatthew G. Knepley . cellGeometry - A local vector with cell geometry
384060225df5SJacob Faibussowitsch - locGrad      - A local vector with field gradients, or NULL
38412f856554SMatthew G. Knepley 
38422f856554SMatthew G. Knepley   Output Parameters:
38432f856554SMatthew G. Knepley + Nface - The number of faces with field values
38442f856554SMatthew G. Knepley . uL    - The field values at the left side of the face
38452f856554SMatthew G. Knepley - uR    - The field values at the right side of the face
38462f856554SMatthew G. Knepley 
38472f856554SMatthew G. Knepley   Level: developer
38482f856554SMatthew G. Knepley 
38491cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexGetFaceFields()`
38502f856554SMatthew G. Knepley @*/
3851d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexRestoreFaceFields(DM dm, PetscInt fStart, PetscInt fEnd, Vec locX, Vec locX_t, Vec faceGeometry, Vec cellGeometry, Vec locGrad, PetscInt *Nface, PetscScalar **uL, PetscScalar **uR)
3852d71ae5a4SJacob Faibussowitsch {
38532f856554SMatthew G. Knepley   PetscFunctionBegin;
38549566063dSJacob Faibussowitsch   PetscCall(DMRestoreWorkArray(dm, 0, MPIU_SCALAR, uL));
38559566063dSJacob Faibussowitsch   PetscCall(DMRestoreWorkArray(dm, 0, MPIU_SCALAR, uR));
38563ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
38572f856554SMatthew G. Knepley }
38582f856554SMatthew G. Knepley 
38592f856554SMatthew G. Knepley /*@C
38602f856554SMatthew G. Knepley   DMPlexGetFaceGeometry - Retrieve the geometric values for a chunk of faces
38612f856554SMatthew G. Knepley 
38622f856554SMatthew G. Knepley   Input Parameters:
3863a1cb98faSBarry Smith + dm           - The `DM`
38642f856554SMatthew G. Knepley . fStart       - The first face to include
38652f856554SMatthew G. Knepley . fEnd         - The first face to exclude
38662f856554SMatthew G. Knepley . faceGeometry - A local vector with face geometry
38672f856554SMatthew G. Knepley - cellGeometry - A local vector with cell geometry
38682f856554SMatthew G. Knepley 
38692f856554SMatthew G. Knepley   Output Parameters:
38702f856554SMatthew G. Knepley + Nface - The number of faces with field values
38712f856554SMatthew G. Knepley . fgeom - The extract the face centroid and normal
38722f856554SMatthew G. Knepley - vol   - The cell volume
38732f856554SMatthew G. Knepley 
38742f856554SMatthew G. Knepley   Level: developer
38752f856554SMatthew G. Knepley 
38761cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexGetCellFields()`
38772f856554SMatthew G. Knepley @*/
3878d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexGetFaceGeometry(DM dm, PetscInt fStart, PetscInt fEnd, Vec faceGeometry, Vec cellGeometry, PetscInt *Nface, PetscFVFaceGeom **fgeom, PetscReal **vol)
3879d71ae5a4SJacob Faibussowitsch {
38802f856554SMatthew G. Knepley   DM                 dmFace, dmCell;
38812f856554SMatthew G. Knepley   DMLabel            ghostLabel;
38822f856554SMatthew G. Knepley   const PetscScalar *facegeom, *cellgeom;
38832f856554SMatthew G. Knepley   PetscInt           dim, numFaces = fEnd - fStart, iface, face;
38842f856554SMatthew G. Knepley 
38852f856554SMatthew G. Knepley   PetscFunctionBegin;
38862f856554SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
38872f856554SMatthew G. Knepley   PetscValidHeaderSpecific(faceGeometry, VEC_CLASSID, 4);
38882f856554SMatthew G. Knepley   PetscValidHeaderSpecific(cellGeometry, VEC_CLASSID, 5);
38894f572ea9SToby Isaac   PetscAssertPointer(fgeom, 7);
38904f572ea9SToby Isaac   PetscAssertPointer(vol, 8);
38919566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dm, &dim));
38929566063dSJacob Faibussowitsch   PetscCall(DMGetLabel(dm, "ghost", &ghostLabel));
38939566063dSJacob Faibussowitsch   PetscCall(VecGetDM(faceGeometry, &dmFace));
38949566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(faceGeometry, &facegeom));
38959566063dSJacob Faibussowitsch   PetscCall(VecGetDM(cellGeometry, &dmCell));
38969566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(cellGeometry, &cellgeom));
38979566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(numFaces, fgeom));
38989566063dSJacob Faibussowitsch   PetscCall(DMGetWorkArray(dm, numFaces * 2, MPIU_SCALAR, vol));
38992f856554SMatthew G. Knepley   for (face = fStart, iface = 0; face < fEnd; ++face) {
39002f856554SMatthew G. Knepley     const PetscInt  *cells;
39012f856554SMatthew G. Knepley     PetscFVFaceGeom *fg;
39022f856554SMatthew G. Knepley     PetscFVCellGeom *cgL, *cgR;
39032f856554SMatthew G. Knepley     PetscFVFaceGeom *fgeoml = *fgeom;
39042f856554SMatthew G. Knepley     PetscReal       *voll   = *vol;
39052f856554SMatthew G. Knepley     PetscInt         ghost, d, nchild, nsupp;
39062f856554SMatthew G. Knepley 
39079566063dSJacob Faibussowitsch     PetscCall(DMLabelGetValue(ghostLabel, face, &ghost));
39089566063dSJacob Faibussowitsch     PetscCall(DMPlexGetSupportSize(dm, face, &nsupp));
39099566063dSJacob Faibussowitsch     PetscCall(DMPlexGetTreeChildren(dm, face, &nchild, NULL));
39102f856554SMatthew G. Knepley     if (ghost >= 0 || nsupp > 2 || nchild > 0) continue;
39119566063dSJacob Faibussowitsch     PetscCall(DMPlexPointLocalRead(dmFace, face, facegeom, &fg));
39129566063dSJacob Faibussowitsch     PetscCall(DMPlexGetSupport(dm, face, &cells));
39139566063dSJacob Faibussowitsch     PetscCall(DMPlexPointLocalRead(dmCell, cells[0], cellgeom, &cgL));
39149566063dSJacob Faibussowitsch     PetscCall(DMPlexPointLocalRead(dmCell, cells[1], cellgeom, &cgR));
39152f856554SMatthew G. Knepley     for (d = 0; d < dim; ++d) {
39162f856554SMatthew G. Knepley       fgeoml[iface].centroid[d] = fg->centroid[d];
39172f856554SMatthew G. Knepley       fgeoml[iface].normal[d]   = fg->normal[d];
39182f856554SMatthew G. Knepley     }
39192f856554SMatthew G. Knepley     voll[iface * 2 + 0] = cgL->volume;
39202f856554SMatthew G. Knepley     voll[iface * 2 + 1] = cgR->volume;
39212f856554SMatthew G. Knepley     ++iface;
39222f856554SMatthew G. Knepley   }
39232f856554SMatthew G. Knepley   *Nface = iface;
39249566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(faceGeometry, &facegeom));
39259566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(cellGeometry, &cellgeom));
39263ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
39272f856554SMatthew G. Knepley }
39282f856554SMatthew G. Knepley 
39292f856554SMatthew G. Knepley /*@C
39302f856554SMatthew G. Knepley   DMPlexRestoreFaceGeometry - Restore the field values values for a chunk of faces
39312f856554SMatthew G. Knepley 
39322f856554SMatthew G. Knepley   Input Parameters:
3933a1cb98faSBarry Smith + dm           - The `DM`
39342f856554SMatthew G. Knepley . fStart       - The first face to include
39352f856554SMatthew G. Knepley . fEnd         - The first face to exclude
39362f856554SMatthew G. Knepley . faceGeometry - A local vector with face geometry
39372f856554SMatthew G. Knepley - cellGeometry - A local vector with cell geometry
39382f856554SMatthew G. Knepley 
39392f856554SMatthew G. Knepley   Output Parameters:
39402f856554SMatthew G. Knepley + Nface - The number of faces with field values
39412f856554SMatthew G. Knepley . fgeom - The extract the face centroid and normal
39422f856554SMatthew G. Knepley - vol   - The cell volume
39432f856554SMatthew G. Knepley 
39442f856554SMatthew G. Knepley   Level: developer
39452f856554SMatthew G. Knepley 
39461cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexGetFaceFields()`
39472f856554SMatthew G. Knepley @*/
3948d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexRestoreFaceGeometry(DM dm, PetscInt fStart, PetscInt fEnd, Vec faceGeometry, Vec cellGeometry, PetscInt *Nface, PetscFVFaceGeom **fgeom, PetscReal **vol)
3949d71ae5a4SJacob Faibussowitsch {
39502f856554SMatthew G. Knepley   PetscFunctionBegin;
39519566063dSJacob Faibussowitsch   PetscCall(PetscFree(*fgeom));
39529566063dSJacob Faibussowitsch   PetscCall(DMRestoreWorkArray(dm, 0, MPIU_REAL, vol));
39533ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
39542f856554SMatthew G. Knepley }
39552f856554SMatthew G. Knepley 
3956d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSNESGetFEGeom(DMField coordField, IS pointIS, PetscQuadrature quad, PetscBool faceData, PetscFEGeom **geom)
3957d71ae5a4SJacob Faibussowitsch {
3958a1cf66bbSMatthew G. Knepley   char           composeStr[33] = {0};
3959a1cf66bbSMatthew G. Knepley   PetscObjectId  id;
3960a1cf66bbSMatthew G. Knepley   PetscContainer container;
3961a1cf66bbSMatthew G. Knepley 
3962a1cf66bbSMatthew G. Knepley   PetscFunctionBegin;
39639566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetId((PetscObject)quad, &id));
396463a3b9bcSJacob Faibussowitsch   PetscCall(PetscSNPrintf(composeStr, 32, "DMSNESGetFEGeom_%" PetscInt64_FMT "\n", id));
39659566063dSJacob Faibussowitsch   PetscCall(PetscObjectQuery((PetscObject)pointIS, composeStr, (PetscObject *)&container));
3966a1cf66bbSMatthew G. Knepley   if (container) {
39679566063dSJacob Faibussowitsch     PetscCall(PetscContainerGetPointer(container, (void **)geom));
3968a1cf66bbSMatthew G. Knepley   } else {
39699566063dSJacob Faibussowitsch     PetscCall(DMFieldCreateFEGeom(coordField, pointIS, quad, faceData, geom));
39709566063dSJacob Faibussowitsch     PetscCall(PetscContainerCreate(PETSC_COMM_SELF, &container));
39719566063dSJacob Faibussowitsch     PetscCall(PetscContainerSetPointer(container, (void *)*geom));
39729566063dSJacob Faibussowitsch     PetscCall(PetscContainerSetUserDestroy(container, PetscContainerUserDestroy_PetscFEGeom));
39739566063dSJacob Faibussowitsch     PetscCall(PetscObjectCompose((PetscObject)pointIS, composeStr, (PetscObject)container));
39749566063dSJacob Faibussowitsch     PetscCall(PetscContainerDestroy(&container));
3975a1cf66bbSMatthew G. Knepley   }
39763ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3977a1cf66bbSMatthew G. Knepley }
3978a1cf66bbSMatthew G. Knepley 
3979d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSNESRestoreFEGeom(DMField coordField, IS pointIS, PetscQuadrature quad, PetscBool faceData, PetscFEGeom **geom)
3980d71ae5a4SJacob Faibussowitsch {
3981a1cf66bbSMatthew G. Knepley   PetscFunctionBegin;
3982a1cf66bbSMatthew G. Knepley   *geom = NULL;
39833ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3984a1cf66bbSMatthew G. Knepley }
3985a1cf66bbSMatthew G. Knepley 
3986d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeResidual_Patch_Internal(DM dm, PetscSection section, IS cellIS, PetscReal t, Vec locX, Vec locX_t, Vec locF, void *user)
3987d71ae5a4SJacob Faibussowitsch {
398892d50984SMatthew G. Knepley   DM_Plex        *mesh       = (DM_Plex *)dm->data;
398992d50984SMatthew G. Knepley   const char     *name       = "Residual";
399092d50984SMatthew G. Knepley   DM              dmAux      = NULL;
399192d50984SMatthew G. Knepley   DMLabel         ghostLabel = NULL;
399292d50984SMatthew G. Knepley   PetscDS         prob       = NULL;
399392d50984SMatthew G. Knepley   PetscDS         probAux    = NULL;
399492d50984SMatthew G. Knepley   PetscBool       useFEM     = PETSC_FALSE;
399592d50984SMatthew G. Knepley   PetscBool       isImplicit = (locX_t || t == PETSC_MIN_REAL) ? PETSC_TRUE : PETSC_FALSE;
399692d50984SMatthew G. Knepley   DMField         coordField = NULL;
3997c0006e53SPatrick Farrell   Vec             locA;
3998c0006e53SPatrick Farrell   PetscScalar    *u = NULL, *u_t, *a, *uL = NULL, *uR = NULL;
399992d50984SMatthew G. Knepley   IS              chunkIS;
400092d50984SMatthew G. Knepley   const PetscInt *cells;
400192d50984SMatthew G. Knepley   PetscInt        cStart, cEnd, numCells;
4002364207b6SKarl Rupp   PetscInt        Nf, f, totDim, totDimAux, numChunks, cellChunkSize, chunk, fStart, fEnd;
400392d50984SMatthew G. Knepley   PetscInt        maxDegree = PETSC_MAX_INT;
400406ad1575SMatthew G. Knepley   PetscFormKey    key;
400592d50984SMatthew G. Knepley   PetscQuadrature affineQuad = NULL, *quads = NULL;
400692d50984SMatthew G. Knepley   PetscFEGeom    *affineGeom = NULL, **geoms = NULL;
400792d50984SMatthew G. Knepley 
400892d50984SMatthew G. Knepley   PetscFunctionBegin;
40099566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(DMPLEX_ResidualFEM, dm, 0, 0, 0));
401092d50984SMatthew G. Knepley   /* FEM+FVM */
401192d50984SMatthew G. Knepley   /* 1: Get sizes from dm and dmAux */
40129566063dSJacob Faibussowitsch   PetscCall(DMGetLabel(dm, "ghost", &ghostLabel));
40139566063dSJacob Faibussowitsch   PetscCall(DMGetDS(dm, &prob));
40149566063dSJacob Faibussowitsch   PetscCall(PetscDSGetNumFields(prob, &Nf));
40159566063dSJacob Faibussowitsch   PetscCall(PetscDSGetTotalDimension(prob, &totDim));
40169566063dSJacob Faibussowitsch   PetscCall(DMGetAuxiliaryVec(dm, NULL, 0, 0, &locA));
401792d50984SMatthew G. Knepley   if (locA) {
40189566063dSJacob Faibussowitsch     PetscCall(VecGetDM(locA, &dmAux));
40199566063dSJacob Faibussowitsch     PetscCall(DMGetDS(dmAux, &probAux));
40209566063dSJacob Faibussowitsch     PetscCall(PetscDSGetTotalDimension(probAux, &totDimAux));
402192d50984SMatthew G. Knepley   }
402292d50984SMatthew G. Knepley   /* 2: Get geometric data */
402392d50984SMatthew G. Knepley   for (f = 0; f < Nf; ++f) {
402492d50984SMatthew G. Knepley     PetscObject  obj;
402592d50984SMatthew G. Knepley     PetscClassId id;
402692d50984SMatthew G. Knepley     PetscBool    fimp;
402792d50984SMatthew G. Knepley 
40289566063dSJacob Faibussowitsch     PetscCall(PetscDSGetImplicit(prob, f, &fimp));
402992d50984SMatthew G. Knepley     if (isImplicit != fimp) continue;
40309566063dSJacob Faibussowitsch     PetscCall(PetscDSGetDiscretization(prob, f, &obj));
40319566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetClassId(obj, &id));
4032ad540459SPierre Jolivet     if (id == PETSCFE_CLASSID) useFEM = PETSC_TRUE;
40335f80ce2aSJacob Faibussowitsch     PetscCheck(id != PETSCFV_CLASSID, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Use of FVM with PCPATCH not yet implemented");
403492d50984SMatthew G. Knepley   }
403592d50984SMatthew G. Knepley   if (useFEM) {
40369566063dSJacob Faibussowitsch     PetscCall(DMGetCoordinateField(dm, &coordField));
40379566063dSJacob Faibussowitsch     PetscCall(DMFieldGetDegree(coordField, cellIS, NULL, &maxDegree));
403892d50984SMatthew G. Knepley     if (maxDegree <= 1) {
40399566063dSJacob Faibussowitsch       PetscCall(DMFieldCreateDefaultQuadrature(coordField, cellIS, &affineQuad));
404048a46eb9SPierre Jolivet       if (affineQuad) PetscCall(DMSNESGetFEGeom(coordField, cellIS, affineQuad, PETSC_FALSE, &affineGeom));
404192d50984SMatthew G. Knepley     } else {
40429566063dSJacob Faibussowitsch       PetscCall(PetscCalloc2(Nf, &quads, Nf, &geoms));
404392d50984SMatthew G. Knepley       for (f = 0; f < Nf; ++f) {
404492d50984SMatthew G. Knepley         PetscObject  obj;
404592d50984SMatthew G. Knepley         PetscClassId id;
404692d50984SMatthew G. Knepley         PetscBool    fimp;
404792d50984SMatthew G. Knepley 
40489566063dSJacob Faibussowitsch         PetscCall(PetscDSGetImplicit(prob, f, &fimp));
404992d50984SMatthew G. Knepley         if (isImplicit != fimp) continue;
40509566063dSJacob Faibussowitsch         PetscCall(PetscDSGetDiscretization(prob, f, &obj));
40519566063dSJacob Faibussowitsch         PetscCall(PetscObjectGetClassId(obj, &id));
405292d50984SMatthew G. Knepley         if (id == PETSCFE_CLASSID) {
405392d50984SMatthew G. Knepley           PetscFE fe = (PetscFE)obj;
405492d50984SMatthew G. Knepley 
40559566063dSJacob Faibussowitsch           PetscCall(PetscFEGetQuadrature(fe, &quads[f]));
40569566063dSJacob Faibussowitsch           PetscCall(PetscObjectReference((PetscObject)quads[f]));
40579566063dSJacob Faibussowitsch           PetscCall(DMSNESGetFEGeom(coordField, cellIS, quads[f], PETSC_FALSE, &geoms[f]));
405892d50984SMatthew G. Knepley         }
405992d50984SMatthew G. Knepley       }
406092d50984SMatthew G. Knepley     }
406192d50984SMatthew G. Knepley   }
406292d50984SMatthew G. Knepley   /* Loop over chunks */
40639566063dSJacob Faibussowitsch   PetscCall(ISGetPointRange(cellIS, &cStart, &cEnd, &cells));
40649566063dSJacob Faibussowitsch   PetscCall(DMPlexGetHeightStratum(dm, 1, &fStart, &fEnd));
40659566063dSJacob Faibussowitsch   if (useFEM) PetscCall(ISCreate(PETSC_COMM_SELF, &chunkIS));
406692d50984SMatthew G. Knepley   numCells      = cEnd - cStart;
406792d50984SMatthew G. Knepley   numChunks     = 1;
406892d50984SMatthew G. Knepley   cellChunkSize = numCells / numChunks;
406992d50984SMatthew G. Knepley   numChunks     = PetscMin(1, numCells);
40706528b96dSMatthew G. Knepley   key.label     = NULL;
40716528b96dSMatthew G. Knepley   key.value     = 0;
407206ad1575SMatthew G. Knepley   key.part      = 0;
407392d50984SMatthew G. Knepley   for (chunk = 0; chunk < numChunks; ++chunk) {
4074c0006e53SPatrick Farrell     PetscScalar     *elemVec, *fluxL = NULL, *fluxR = NULL;
4075c0006e53SPatrick Farrell     PetscReal       *vol   = NULL;
4076c0006e53SPatrick Farrell     PetscFVFaceGeom *fgeom = NULL;
407792d50984SMatthew G. Knepley     PetscInt         cS = cStart + chunk * cellChunkSize, cE = PetscMin(cS + cellChunkSize, cEnd), numCells = cE - cS, c;
4078c0006e53SPatrick Farrell     PetscInt         numFaces = 0;
407992d50984SMatthew G. Knepley 
408092d50984SMatthew G. Knepley     /* Extract field coefficients */
408192d50984SMatthew G. Knepley     if (useFEM) {
40829566063dSJacob Faibussowitsch       PetscCall(ISGetPointSubrange(chunkIS, cS, cE, cells));
40839566063dSJacob Faibussowitsch       PetscCall(DMPlexGetCellFields(dm, chunkIS, locX, locX_t, locA, &u, &u_t, &a));
40849566063dSJacob Faibussowitsch       PetscCall(DMGetWorkArray(dm, numCells * totDim, MPIU_SCALAR, &elemVec));
40859566063dSJacob Faibussowitsch       PetscCall(PetscArrayzero(elemVec, numCells * totDim));
408692d50984SMatthew G. Knepley     }
408792d50984SMatthew G. Knepley     /* TODO We will interlace both our field coefficients (u, u_t, uL, uR, etc.) and our output (elemVec, fL, fR). I think this works */
408892d50984SMatthew G. Knepley     /* Loop over fields */
408992d50984SMatthew G. Knepley     for (f = 0; f < Nf; ++f) {
409092d50984SMatthew G. Knepley       PetscObject  obj;
409192d50984SMatthew G. Knepley       PetscClassId id;
409292d50984SMatthew G. Knepley       PetscBool    fimp;
409392d50984SMatthew G. Knepley       PetscInt     numChunks, numBatches, batchSize, numBlocks, blockSize, Ne, Nr, offset;
409492d50984SMatthew G. Knepley 
40956528b96dSMatthew G. Knepley       key.field = f;
40969566063dSJacob Faibussowitsch       PetscCall(PetscDSGetImplicit(prob, f, &fimp));
409792d50984SMatthew G. Knepley       if (isImplicit != fimp) continue;
40989566063dSJacob Faibussowitsch       PetscCall(PetscDSGetDiscretization(prob, f, &obj));
40999566063dSJacob Faibussowitsch       PetscCall(PetscObjectGetClassId(obj, &id));
410092d50984SMatthew G. Knepley       if (id == PETSCFE_CLASSID) {
410192d50984SMatthew G. Knepley         PetscFE         fe        = (PetscFE)obj;
410292d50984SMatthew G. Knepley         PetscFEGeom    *geom      = affineGeom ? affineGeom : geoms[f];
410392d50984SMatthew G. Knepley         PetscFEGeom    *chunkGeom = NULL;
410492d50984SMatthew G. Knepley         PetscQuadrature quad      = affineQuad ? affineQuad : quads[f];
410592d50984SMatthew G. Knepley         PetscInt        Nq, Nb;
410692d50984SMatthew G. Knepley 
41079566063dSJacob Faibussowitsch         PetscCall(PetscFEGetTileSizes(fe, NULL, &numBlocks, NULL, &numBatches));
41089566063dSJacob Faibussowitsch         PetscCall(PetscQuadratureGetData(quad, NULL, NULL, &Nq, NULL, NULL));
41099566063dSJacob Faibussowitsch         PetscCall(PetscFEGetDimension(fe, &Nb));
411092d50984SMatthew G. Knepley         blockSize = Nb;
411192d50984SMatthew G. Knepley         batchSize = numBlocks * blockSize;
41129566063dSJacob Faibussowitsch         PetscCall(PetscFESetTileSizes(fe, blockSize, numBlocks, batchSize, numBatches));
411392d50984SMatthew G. Knepley         numChunks = numCells / (numBatches * batchSize);
411492d50984SMatthew G. Knepley         Ne        = numChunks * numBatches * batchSize;
411592d50984SMatthew G. Knepley         Nr        = numCells % (numBatches * batchSize);
411692d50984SMatthew G. Knepley         offset    = numCells - Nr;
411792d50984SMatthew G. Knepley         /* Integrate FE residual to get elemVec (need fields at quadrature points) */
411892d50984SMatthew G. Knepley         /*   For FV, I think we use a P0 basis and the cell coefficients (for subdivided cells, we can tweak the basis tabulation to be the indicator function) */
41199566063dSJacob Faibussowitsch         PetscCall(PetscFEGeomGetChunk(geom, 0, offset, &chunkGeom));
41209566063dSJacob Faibussowitsch         PetscCall(PetscFEIntegrateResidual(prob, key, Ne, chunkGeom, u, u_t, probAux, a, t, elemVec));
41219566063dSJacob Faibussowitsch         PetscCall(PetscFEGeomGetChunk(geom, offset, numCells, &chunkGeom));
41229566063dSJacob Faibussowitsch         PetscCall(PetscFEIntegrateResidual(prob, key, Nr, chunkGeom, &u[offset * totDim], u_t ? &u_t[offset * totDim] : NULL, probAux, &a[offset * totDimAux], t, &elemVec[offset * totDim]));
41239566063dSJacob Faibussowitsch         PetscCall(PetscFEGeomRestoreChunk(geom, offset, numCells, &chunkGeom));
412492d50984SMatthew G. Knepley       } else if (id == PETSCFV_CLASSID) {
412592d50984SMatthew G. Knepley         PetscFV fv = (PetscFV)obj;
412692d50984SMatthew G. Knepley 
412792d50984SMatthew G. Knepley         Ne = numFaces;
412892d50984SMatthew G. Knepley         /* Riemann solve over faces (need fields at face centroids) */
412992d50984SMatthew G. Knepley         /*   We need to evaluate FE fields at those coordinates */
41309566063dSJacob Faibussowitsch         PetscCall(PetscFVIntegrateRHSFunction(fv, prob, f, Ne, fgeom, vol, uL, uR, fluxL, fluxR));
413163a3b9bcSJacob Faibussowitsch       } else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, f);
413292d50984SMatthew G. Knepley     }
413392d50984SMatthew G. Knepley     /* Loop over domain */
413492d50984SMatthew G. Knepley     if (useFEM) {
413592d50984SMatthew G. Knepley       /* Add elemVec to locX */
413692d50984SMatthew G. Knepley       for (c = cS; c < cE; ++c) {
413792d50984SMatthew G. Knepley         const PetscInt cell = cells ? cells[c] : c;
413892d50984SMatthew G. Knepley         const PetscInt cind = c - cStart;
413992d50984SMatthew G. Knepley 
41409566063dSJacob Faibussowitsch         if (mesh->printFEM > 1) PetscCall(DMPrintCellVector(cell, name, totDim, &elemVec[cind * totDim]));
414192d50984SMatthew G. Knepley         if (ghostLabel) {
414292d50984SMatthew G. Knepley           PetscInt ghostVal;
414392d50984SMatthew G. Knepley 
41449566063dSJacob Faibussowitsch           PetscCall(DMLabelGetValue(ghostLabel, cell, &ghostVal));
414592d50984SMatthew G. Knepley           if (ghostVal > 0) continue;
414692d50984SMatthew G. Knepley         }
41479566063dSJacob Faibussowitsch         PetscCall(DMPlexVecSetClosure(dm, section, locF, cell, &elemVec[cind * totDim], ADD_ALL_VALUES));
414892d50984SMatthew G. Knepley       }
414992d50984SMatthew G. Knepley     }
415092d50984SMatthew G. Knepley     /* Handle time derivative */
415192d50984SMatthew G. Knepley     if (locX_t) {
415292d50984SMatthew G. Knepley       PetscScalar *x_t, *fa;
415392d50984SMatthew G. Knepley 
41549566063dSJacob Faibussowitsch       PetscCall(VecGetArray(locF, &fa));
41559566063dSJacob Faibussowitsch       PetscCall(VecGetArray(locX_t, &x_t));
415692d50984SMatthew G. Knepley       for (f = 0; f < Nf; ++f) {
415792d50984SMatthew G. Knepley         PetscFV      fv;
415892d50984SMatthew G. Knepley         PetscObject  obj;
415992d50984SMatthew G. Knepley         PetscClassId id;
416092d50984SMatthew G. Knepley         PetscInt     pdim, d;
416192d50984SMatthew G. Knepley 
41629566063dSJacob Faibussowitsch         PetscCall(PetscDSGetDiscretization(prob, f, &obj));
41639566063dSJacob Faibussowitsch         PetscCall(PetscObjectGetClassId(obj, &id));
416492d50984SMatthew G. Knepley         if (id != PETSCFV_CLASSID) continue;
416592d50984SMatthew G. Knepley         fv = (PetscFV)obj;
41669566063dSJacob Faibussowitsch         PetscCall(PetscFVGetNumComponents(fv, &pdim));
416792d50984SMatthew G. Knepley         for (c = cS; c < cE; ++c) {
416892d50984SMatthew G. Knepley           const PetscInt cell = cells ? cells[c] : c;
416992d50984SMatthew G. Knepley           PetscScalar   *u_t, *r;
417092d50984SMatthew G. Knepley 
417192d50984SMatthew G. Knepley           if (ghostLabel) {
417292d50984SMatthew G. Knepley             PetscInt ghostVal;
417392d50984SMatthew G. Knepley 
41749566063dSJacob Faibussowitsch             PetscCall(DMLabelGetValue(ghostLabel, cell, &ghostVal));
417592d50984SMatthew G. Knepley             if (ghostVal > 0) continue;
417692d50984SMatthew G. Knepley           }
41779566063dSJacob Faibussowitsch           PetscCall(DMPlexPointLocalFieldRead(dm, cell, f, x_t, &u_t));
41789566063dSJacob Faibussowitsch           PetscCall(DMPlexPointLocalFieldRef(dm, cell, f, fa, &r));
417992d50984SMatthew G. Knepley           for (d = 0; d < pdim; ++d) r[d] += u_t[d];
418092d50984SMatthew G. Knepley         }
418192d50984SMatthew G. Knepley       }
41829566063dSJacob Faibussowitsch       PetscCall(VecRestoreArray(locX_t, &x_t));
41839566063dSJacob Faibussowitsch       PetscCall(VecRestoreArray(locF, &fa));
418492d50984SMatthew G. Knepley     }
418592d50984SMatthew G. Knepley     if (useFEM) {
41869566063dSJacob Faibussowitsch       PetscCall(DMPlexRestoreCellFields(dm, chunkIS, locX, locX_t, locA, &u, &u_t, &a));
41879566063dSJacob Faibussowitsch       PetscCall(DMRestoreWorkArray(dm, numCells * totDim, MPIU_SCALAR, &elemVec));
418892d50984SMatthew G. Knepley     }
418992d50984SMatthew G. Knepley   }
41909566063dSJacob Faibussowitsch   if (useFEM) PetscCall(ISDestroy(&chunkIS));
41919566063dSJacob Faibussowitsch   PetscCall(ISRestorePointRange(cellIS, &cStart, &cEnd, &cells));
419292d50984SMatthew G. Knepley   /* TODO Could include boundary residual here (see DMPlexComputeResidual_Internal) */
419392d50984SMatthew G. Knepley   if (useFEM) {
419492d50984SMatthew G. Knepley     if (maxDegree <= 1) {
41959566063dSJacob Faibussowitsch       PetscCall(DMSNESRestoreFEGeom(coordField, cellIS, affineQuad, PETSC_FALSE, &affineGeom));
41969566063dSJacob Faibussowitsch       PetscCall(PetscQuadratureDestroy(&affineQuad));
419792d50984SMatthew G. Knepley     } else {
419892d50984SMatthew G. Knepley       for (f = 0; f < Nf; ++f) {
41999566063dSJacob Faibussowitsch         PetscCall(DMSNESRestoreFEGeom(coordField, cellIS, quads[f], PETSC_FALSE, &geoms[f]));
42009566063dSJacob Faibussowitsch         PetscCall(PetscQuadratureDestroy(&quads[f]));
420192d50984SMatthew G. Knepley       }
42029566063dSJacob Faibussowitsch       PetscCall(PetscFree2(quads, geoms));
420392d50984SMatthew G. Knepley     }
420492d50984SMatthew G. Knepley   }
42059566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(DMPLEX_ResidualFEM, dm, 0, 0, 0));
42063ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
420792d50984SMatthew G. Knepley }
420892d50984SMatthew G. Knepley 
4209a1cf66bbSMatthew G. Knepley /*
4210a1cf66bbSMatthew G. Knepley   We always assemble JacP, and if the matrix is different from Jac and two different sets of point functions are provided, we also assemble Jac
4211a1cf66bbSMatthew G. Knepley 
4212a1cf66bbSMatthew G. Knepley   X   - The local solution vector
4213a5b23f4aSJose E. Roman   X_t - The local solution time derivative vector, or NULL
4214a1cf66bbSMatthew G. Knepley */
4215d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeJacobian_Patch_Internal(DM dm, PetscSection section, PetscSection globalSection, IS cellIS, PetscReal t, PetscReal X_tShift, Vec X, Vec X_t, Mat Jac, Mat JacP, void *ctx)
4216d71ae5a4SJacob Faibussowitsch {
4217a1cf66bbSMatthew G. Knepley   DM_Plex        *mesh = (DM_Plex *)dm->data;
4218a1cf66bbSMatthew G. Knepley   const char     *name = "Jacobian", *nameP = "JacobianPre";
4219a1cf66bbSMatthew G. Knepley   DM              dmAux = NULL;
4220a1cf66bbSMatthew G. Knepley   PetscDS         prob, probAux = NULL;
4221a1cf66bbSMatthew G. Knepley   PetscSection    sectionAux = NULL;
4222a1cf66bbSMatthew G. Knepley   Vec             A;
4223a1cf66bbSMatthew G. Knepley   DMField         coordField;
4224a1cf66bbSMatthew G. Knepley   PetscFEGeom    *cgeomFEM;
4225a1cf66bbSMatthew G. Knepley   PetscQuadrature qGeom = NULL;
4226a1cf66bbSMatthew G. Knepley   Mat             J = Jac, JP = JacP;
4227a1cf66bbSMatthew G. Knepley   PetscScalar    *work, *u = NULL, *u_t = NULL, *a = NULL, *elemMat = NULL, *elemMatP = NULL, *elemMatD = NULL;
4228e432b41dSStefano Zampini   PetscBool       hasJac, hasPrec, hasDyn, assembleJac, *isFE, hasFV = PETSC_FALSE;
4229a1cf66bbSMatthew G. Knepley   const PetscInt *cells;
423006ad1575SMatthew G. Knepley   PetscFormKey    key;
42319b2fc754SMatthew G. Knepley   PetscInt        Nf, fieldI, fieldJ, maxDegree, numCells, cStart, cEnd, numChunks, chunkSize, chunk, totDim, totDimAux = 0, sz, wsz, off = 0, offCell = 0;
4232a1cf66bbSMatthew G. Knepley 
4233a1cf66bbSMatthew G. Knepley   PetscFunctionBegin;
42349566063dSJacob Faibussowitsch   PetscCall(ISGetLocalSize(cellIS, &numCells));
42359566063dSJacob Faibussowitsch   PetscCall(ISGetPointRange(cellIS, &cStart, &cEnd, &cells));
42369566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(DMPLEX_JacobianFEM, dm, 0, 0, 0));
42379566063dSJacob Faibussowitsch   PetscCall(DMGetDS(dm, &prob));
42389566063dSJacob Faibussowitsch   PetscCall(DMGetAuxiliaryVec(dm, NULL, 0, 0, &A));
42399a2a23afSMatthew G. Knepley   if (A) {
42409566063dSJacob Faibussowitsch     PetscCall(VecGetDM(A, &dmAux));
42419566063dSJacob Faibussowitsch     PetscCall(DMGetLocalSection(dmAux, &sectionAux));
42429566063dSJacob Faibussowitsch     PetscCall(DMGetDS(dmAux, &probAux));
4243a1cf66bbSMatthew G. Knepley   }
4244a1cf66bbSMatthew G. Knepley   /* Get flags */
42459566063dSJacob Faibussowitsch   PetscCall(PetscDSGetNumFields(prob, &Nf));
42469566063dSJacob Faibussowitsch   PetscCall(DMGetWorkArray(dm, Nf, MPIU_BOOL, &isFE));
4247a1cf66bbSMatthew G. Knepley   for (fieldI = 0; fieldI < Nf; ++fieldI) {
4248a1cf66bbSMatthew G. Knepley     PetscObject  disc;
4249a1cf66bbSMatthew G. Knepley     PetscClassId id;
42509566063dSJacob Faibussowitsch     PetscCall(PetscDSGetDiscretization(prob, fieldI, &disc));
42519566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetClassId(disc, &id));
42529371c9d4SSatish Balay     if (id == PETSCFE_CLASSID) {
42539371c9d4SSatish Balay       isFE[fieldI] = PETSC_TRUE;
42549371c9d4SSatish Balay     } else if (id == PETSCFV_CLASSID) {
42559371c9d4SSatish Balay       hasFV        = PETSC_TRUE;
42569371c9d4SSatish Balay       isFE[fieldI] = PETSC_FALSE;
42579371c9d4SSatish Balay     }
4258a1cf66bbSMatthew G. Knepley   }
42599566063dSJacob Faibussowitsch   PetscCall(PetscDSHasJacobian(prob, &hasJac));
42609566063dSJacob Faibussowitsch   PetscCall(PetscDSHasJacobianPreconditioner(prob, &hasPrec));
42619566063dSJacob Faibussowitsch   PetscCall(PetscDSHasDynamicJacobian(prob, &hasDyn));
4262a1cf66bbSMatthew G. Knepley   assembleJac = hasJac && hasPrec && (Jac != JacP) ? PETSC_TRUE : PETSC_FALSE;
4263a1cf66bbSMatthew G. Knepley   hasDyn      = hasDyn && (X_tShift != 0.0) ? PETSC_TRUE : PETSC_FALSE;
42649566063dSJacob Faibussowitsch   if (hasFV) PetscCall(MatSetOption(JP, MAT_IGNORE_ZERO_ENTRIES, PETSC_TRUE)); /* No allocated space for FV stuff, so ignore the zero entries */
42659566063dSJacob Faibussowitsch   PetscCall(PetscDSGetTotalDimension(prob, &totDim));
42669566063dSJacob Faibussowitsch   if (probAux) PetscCall(PetscDSGetTotalDimension(probAux, &totDimAux));
4267a1cf66bbSMatthew G. Knepley   /* Compute batch sizes */
4268a1cf66bbSMatthew G. Knepley   if (isFE[0]) {
4269a1cf66bbSMatthew G. Knepley     PetscFE         fe;
4270a1cf66bbSMatthew G. Knepley     PetscQuadrature q;
4271a1cf66bbSMatthew G. Knepley     PetscInt        numQuadPoints, numBatches, batchSize, numBlocks, blockSize, Nb;
4272a1cf66bbSMatthew G. Knepley 
42739566063dSJacob Faibussowitsch     PetscCall(PetscDSGetDiscretization(prob, 0, (PetscObject *)&fe));
42749566063dSJacob Faibussowitsch     PetscCall(PetscFEGetQuadrature(fe, &q));
42759566063dSJacob Faibussowitsch     PetscCall(PetscQuadratureGetData(q, NULL, NULL, &numQuadPoints, NULL, NULL));
42769566063dSJacob Faibussowitsch     PetscCall(PetscFEGetDimension(fe, &Nb));
42779566063dSJacob Faibussowitsch     PetscCall(PetscFEGetTileSizes(fe, NULL, &numBlocks, NULL, &numBatches));
4278a1cf66bbSMatthew G. Knepley     blockSize = Nb * numQuadPoints;
4279a1cf66bbSMatthew G. Knepley     batchSize = numBlocks * blockSize;
4280a1cf66bbSMatthew G. Knepley     chunkSize = numBatches * batchSize;
4281a1cf66bbSMatthew G. Knepley     numChunks = numCells / chunkSize + numCells % chunkSize;
42829566063dSJacob Faibussowitsch     PetscCall(PetscFESetTileSizes(fe, blockSize, numBlocks, batchSize, numBatches));
4283a1cf66bbSMatthew G. Knepley   } else {
4284a1cf66bbSMatthew G. Knepley     chunkSize = numCells;
4285a1cf66bbSMatthew G. Knepley     numChunks = 1;
4286a1cf66bbSMatthew G. Knepley   }
4287a1cf66bbSMatthew G. Knepley   /* Get work space */
4288a1cf66bbSMatthew G. Knepley   wsz = (((X ? 1 : 0) + (X_t ? 1 : 0) + (dmAux ? 1 : 0)) * totDim + ((hasJac ? 1 : 0) + (hasPrec ? 1 : 0) + (hasDyn ? 1 : 0)) * totDim * totDim) * chunkSize;
42899566063dSJacob Faibussowitsch   PetscCall(DMGetWorkArray(dm, wsz, MPIU_SCALAR, &work));
42909566063dSJacob Faibussowitsch   PetscCall(PetscArrayzero(work, wsz));
4291a1cf66bbSMatthew G. Knepley   off      = 0;
4292a1cf66bbSMatthew G. Knepley   u        = X ? (sz = chunkSize * totDim, off += sz, work + off - sz) : NULL;
4293a1cf66bbSMatthew G. Knepley   u_t      = X_t ? (sz = chunkSize * totDim, off += sz, work + off - sz) : NULL;
4294a1cf66bbSMatthew G. Knepley   a        = dmAux ? (sz = chunkSize * totDimAux, off += sz, work + off - sz) : NULL;
4295a1cf66bbSMatthew G. Knepley   elemMat  = hasJac ? (sz = chunkSize * totDim * totDim, off += sz, work + off - sz) : NULL;
4296a1cf66bbSMatthew G. Knepley   elemMatP = hasPrec ? (sz = chunkSize * totDim * totDim, off += sz, work + off - sz) : NULL;
4297a1cf66bbSMatthew G. Knepley   elemMatD = hasDyn ? (sz = chunkSize * totDim * totDim, off += sz, work + off - sz) : NULL;
429863a3b9bcSJacob Faibussowitsch   PetscCheck(off == wsz, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Error is workspace size %" PetscInt_FMT " should be %" PetscInt_FMT, off, wsz);
4299a1cf66bbSMatthew G. Knepley   /* Setup geometry */
43009566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateField(dm, &coordField));
43019566063dSJacob Faibussowitsch   PetscCall(DMFieldGetDegree(coordField, cellIS, NULL, &maxDegree));
43029566063dSJacob Faibussowitsch   if (maxDegree <= 1) PetscCall(DMFieldCreateDefaultQuadrature(coordField, cellIS, &qGeom));
4303a1cf66bbSMatthew G. Knepley   if (!qGeom) {
4304a1cf66bbSMatthew G. Knepley     PetscFE fe;
4305a1cf66bbSMatthew G. Knepley 
43069566063dSJacob Faibussowitsch     PetscCall(PetscDSGetDiscretization(prob, 0, (PetscObject *)&fe));
43079566063dSJacob Faibussowitsch     PetscCall(PetscFEGetQuadrature(fe, &qGeom));
43089566063dSJacob Faibussowitsch     PetscCall(PetscObjectReference((PetscObject)qGeom));
4309a1cf66bbSMatthew G. Knepley   }
43109566063dSJacob Faibussowitsch   PetscCall(DMSNESGetFEGeom(coordField, cellIS, qGeom, PETSC_FALSE, &cgeomFEM));
4311a1cf66bbSMatthew G. Knepley   /* Compute volume integrals */
43129566063dSJacob Faibussowitsch   if (assembleJac) PetscCall(MatZeroEntries(J));
43139566063dSJacob Faibussowitsch   PetscCall(MatZeroEntries(JP));
43146528b96dSMatthew G. Knepley   key.label = NULL;
43156528b96dSMatthew G. Knepley   key.value = 0;
431606ad1575SMatthew G. Knepley   key.part  = 0;
4317a1cf66bbSMatthew G. Knepley   for (chunk = 0; chunk < numChunks; ++chunk, offCell += chunkSize) {
4318a1cf66bbSMatthew G. Knepley     const PetscInt Ncell = PetscMin(chunkSize, numCells - offCell);
4319a1cf66bbSMatthew G. Knepley     PetscInt       c;
4320a1cf66bbSMatthew G. Knepley 
4321a1cf66bbSMatthew G. Knepley     /* Extract values */
4322a1cf66bbSMatthew G. Knepley     for (c = 0; c < Ncell; ++c) {
4323a1cf66bbSMatthew G. Knepley       const PetscInt cell = cells ? cells[c + offCell] : c + offCell;
4324a1cf66bbSMatthew G. Knepley       PetscScalar   *x = NULL, *x_t = NULL;
4325a1cf66bbSMatthew G. Knepley       PetscInt       i;
4326a1cf66bbSMatthew G. Knepley 
4327a1cf66bbSMatthew G. Knepley       if (X) {
43289566063dSJacob Faibussowitsch         PetscCall(DMPlexVecGetClosure(dm, section, X, cell, NULL, &x));
4329a1cf66bbSMatthew G. Knepley         for (i = 0; i < totDim; ++i) u[c * totDim + i] = x[i];
43309566063dSJacob Faibussowitsch         PetscCall(DMPlexVecRestoreClosure(dm, section, X, cell, NULL, &x));
4331a1cf66bbSMatthew G. Knepley       }
4332a1cf66bbSMatthew G. Knepley       if (X_t) {
43339566063dSJacob Faibussowitsch         PetscCall(DMPlexVecGetClosure(dm, section, X_t, cell, NULL, &x_t));
4334a1cf66bbSMatthew G. Knepley         for (i = 0; i < totDim; ++i) u_t[c * totDim + i] = x_t[i];
43359566063dSJacob Faibussowitsch         PetscCall(DMPlexVecRestoreClosure(dm, section, X_t, cell, NULL, &x_t));
4336a1cf66bbSMatthew G. Knepley       }
4337a1cf66bbSMatthew G. Knepley       if (dmAux) {
43389566063dSJacob Faibussowitsch         PetscCall(DMPlexVecGetClosure(dmAux, sectionAux, A, cell, NULL, &x));
4339a1cf66bbSMatthew G. Knepley         for (i = 0; i < totDimAux; ++i) a[c * totDimAux + i] = x[i];
43409566063dSJacob Faibussowitsch         PetscCall(DMPlexVecRestoreClosure(dmAux, sectionAux, A, cell, NULL, &x));
4341a1cf66bbSMatthew G. Knepley       }
4342a1cf66bbSMatthew G. Knepley     }
4343a1cf66bbSMatthew G. Knepley     for (fieldI = 0; fieldI < Nf; ++fieldI) {
4344a1cf66bbSMatthew G. Knepley       PetscFE fe;
43459566063dSJacob Faibussowitsch       PetscCall(PetscDSGetDiscretization(prob, fieldI, (PetscObject *)&fe));
4346a1cf66bbSMatthew G. Knepley       for (fieldJ = 0; fieldJ < Nf; ++fieldJ) {
43476528b96dSMatthew G. Knepley         key.field = fieldI * Nf + fieldJ;
43489566063dSJacob Faibussowitsch         if (hasJac) PetscCall(PetscFEIntegrateJacobian(prob, PETSCFE_JACOBIAN, key, Ncell, cgeomFEM, u, u_t, probAux, a, t, X_tShift, elemMat));
43499566063dSJacob Faibussowitsch         if (hasPrec) PetscCall(PetscFEIntegrateJacobian(prob, PETSCFE_JACOBIAN_PRE, key, Ncell, cgeomFEM, u, u_t, probAux, a, t, X_tShift, elemMatP));
43509566063dSJacob Faibussowitsch         if (hasDyn) PetscCall(PetscFEIntegrateJacobian(prob, PETSCFE_JACOBIAN_DYN, key, Ncell, cgeomFEM, u, u_t, probAux, a, t, X_tShift, elemMatD));
4351a1cf66bbSMatthew G. Knepley       }
4352a1cf66bbSMatthew G. Knepley       /* For finite volume, add the identity */
4353a1cf66bbSMatthew G. Knepley       if (!isFE[fieldI]) {
4354a1cf66bbSMatthew G. Knepley         PetscFV  fv;
4355a1cf66bbSMatthew G. Knepley         PetscInt eOffset = 0, Nc, fc, foff;
4356a1cf66bbSMatthew G. Knepley 
43579566063dSJacob Faibussowitsch         PetscCall(PetscDSGetFieldOffset(prob, fieldI, &foff));
43589566063dSJacob Faibussowitsch         PetscCall(PetscDSGetDiscretization(prob, fieldI, (PetscObject *)&fv));
43599566063dSJacob Faibussowitsch         PetscCall(PetscFVGetNumComponents(fv, &Nc));
4360a1cf66bbSMatthew G. Knepley         for (c = 0; c < chunkSize; ++c, eOffset += totDim * totDim) {
4361a1cf66bbSMatthew G. Knepley           for (fc = 0; fc < Nc; ++fc) {
4362a1cf66bbSMatthew G. Knepley             const PetscInt i = foff + fc;
4363ad540459SPierre Jolivet             if (hasJac) elemMat[eOffset + i * totDim + i] = 1.0;
4364ad540459SPierre Jolivet             if (hasPrec) elemMatP[eOffset + i * totDim + i] = 1.0;
4365a1cf66bbSMatthew G. Knepley           }
4366a1cf66bbSMatthew G. Knepley         }
4367a1cf66bbSMatthew G. Knepley       }
4368a1cf66bbSMatthew G. Knepley     }
4369a1cf66bbSMatthew G. Knepley     /*   Add contribution from X_t */
43709371c9d4SSatish Balay     if (hasDyn) {
43719371c9d4SSatish Balay       for (c = 0; c < chunkSize * totDim * totDim; ++c) elemMat[c] += X_tShift * elemMatD[c];
43729371c9d4SSatish Balay     }
4373a1cf66bbSMatthew G. Knepley     /* Insert values into matrix */
4374a1cf66bbSMatthew G. Knepley     for (c = 0; c < Ncell; ++c) {
4375a1cf66bbSMatthew G. Knepley       const PetscInt cell = cells ? cells[c + offCell] : c + offCell;
4376a1cf66bbSMatthew G. Knepley       if (mesh->printFEM > 1) {
43779566063dSJacob Faibussowitsch         if (hasJac) PetscCall(DMPrintCellMatrix(cell, name, totDim, totDim, &elemMat[(c - cStart) * totDim * totDim]));
43789566063dSJacob Faibussowitsch         if (hasPrec) PetscCall(DMPrintCellMatrix(cell, nameP, totDim, totDim, &elemMatP[(c - cStart) * totDim * totDim]));
4379a1cf66bbSMatthew G. Knepley       }
43809566063dSJacob Faibussowitsch       if (assembleJac) PetscCall(DMPlexMatSetClosure(dm, section, globalSection, Jac, cell, &elemMat[(c - cStart) * totDim * totDim], ADD_VALUES));
43819566063dSJacob Faibussowitsch       PetscCall(DMPlexMatSetClosure(dm, section, globalSection, JP, cell, &elemMat[(c - cStart) * totDim * totDim], ADD_VALUES));
4382a1cf66bbSMatthew G. Knepley     }
4383a1cf66bbSMatthew G. Knepley   }
4384a1cf66bbSMatthew G. Knepley   /* Cleanup */
43859566063dSJacob Faibussowitsch   PetscCall(DMSNESRestoreFEGeom(coordField, cellIS, qGeom, PETSC_FALSE, &cgeomFEM));
43869566063dSJacob Faibussowitsch   PetscCall(PetscQuadratureDestroy(&qGeom));
43879566063dSJacob Faibussowitsch   if (hasFV) PetscCall(MatSetOption(JacP, MAT_IGNORE_ZERO_ENTRIES, PETSC_FALSE));
43889566063dSJacob Faibussowitsch   PetscCall(DMRestoreWorkArray(dm, Nf, MPIU_BOOL, &isFE));
43899566063dSJacob Faibussowitsch   PetscCall(DMRestoreWorkArray(dm, ((1 + (X_t ? 1 : 0) + (dmAux ? 1 : 0)) * totDim + ((hasJac ? 1 : 0) + (hasPrec ? 1 : 0) + (hasDyn ? 1 : 0)) * totDim * totDim) * chunkSize, MPIU_SCALAR, &work));
4390a1cf66bbSMatthew G. Knepley   /* Compute boundary integrals */
43919566063dSJacob Faibussowitsch   /* PetscCall(DMPlexComputeBdJacobian_Internal(dm, X, X_t, t, X_tShift, Jac, JacP, ctx)); */
4392a1cf66bbSMatthew G. Knepley   /* Assemble matrix */
43939371c9d4SSatish Balay   if (assembleJac) {
43949371c9d4SSatish Balay     PetscCall(MatAssemblyBegin(Jac, MAT_FINAL_ASSEMBLY));
43959371c9d4SSatish Balay     PetscCall(MatAssemblyEnd(Jac, MAT_FINAL_ASSEMBLY));
43969371c9d4SSatish Balay   }
43979371c9d4SSatish Balay   PetscCall(MatAssemblyBegin(JacP, MAT_FINAL_ASSEMBLY));
43989371c9d4SSatish Balay   PetscCall(MatAssemblyEnd(JacP, MAT_FINAL_ASSEMBLY));
43999566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(DMPLEX_JacobianFEM, dm, 0, 0, 0));
44003ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
4401a1cf66bbSMatthew G. Knepley }
44023e9753d6SMatthew G. Knepley 
44033e9753d6SMatthew G. Knepley /******** FEM Assembly Function ********/
44043e9753d6SMatthew G. Knepley 
4405d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMConvertPlex_Internal(DM dm, DM *plex, PetscBool copy)
4406d71ae5a4SJacob Faibussowitsch {
44073e9753d6SMatthew G. Knepley   PetscBool isPlex;
44083e9753d6SMatthew G. Knepley 
44093e9753d6SMatthew G. Knepley   PetscFunctionBegin;
44109566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)dm, DMPLEX, &isPlex));
44113e9753d6SMatthew G. Knepley   if (isPlex) {
44123e9753d6SMatthew G. Knepley     *plex = dm;
44139566063dSJacob Faibussowitsch     PetscCall(PetscObjectReference((PetscObject)dm));
44143e9753d6SMatthew G. Knepley   } else {
44159566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)dm, "dm_plex", (PetscObject *)plex));
44163e9753d6SMatthew G. Knepley     if (!*plex) {
44179566063dSJacob Faibussowitsch       PetscCall(DMConvert(dm, DMPLEX, plex));
44189566063dSJacob Faibussowitsch       PetscCall(PetscObjectCompose((PetscObject)dm, "dm_plex", (PetscObject)*plex));
44191baa6e33SBarry Smith       if (copy) PetscCall(DMCopyAuxiliaryVec(dm, *plex));
44203e9753d6SMatthew G. Knepley     } else {
44219566063dSJacob Faibussowitsch       PetscCall(PetscObjectReference((PetscObject)*plex));
44223e9753d6SMatthew G. Knepley     }
44233e9753d6SMatthew G. Knepley   }
44243ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
44253e9753d6SMatthew G. Knepley }
44263e9753d6SMatthew G. Knepley 
44273e9753d6SMatthew G. Knepley /*@
44283e9753d6SMatthew G. Knepley   DMPlexGetGeometryFVM - Return precomputed geometric data
44293e9753d6SMatthew G. Knepley 
443020f4b53cSBarry Smith   Collective
44313e9753d6SMatthew G. Knepley 
44323e9753d6SMatthew G. Knepley   Input Parameter:
4433a1cb98faSBarry Smith . dm - The `DM`
44343e9753d6SMatthew G. Knepley 
44353e9753d6SMatthew G. Knepley   Output Parameters:
44363e9753d6SMatthew G. Knepley + facegeom  - The values precomputed from face geometry
44373e9753d6SMatthew G. Knepley . cellgeom  - The values precomputed from cell geometry
44383e9753d6SMatthew G. Knepley - minRadius - The minimum radius over the mesh of an inscribed sphere in a cell
44393e9753d6SMatthew G. Knepley 
44403e9753d6SMatthew G. Knepley   Level: developer
44413e9753d6SMatthew G. Knepley 
44421cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMTSSetRHSFunctionLocal()`
44433e9753d6SMatthew G. Knepley @*/
4444d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexGetGeometryFVM(DM dm, Vec *facegeom, Vec *cellgeom, PetscReal *minRadius)
4445d71ae5a4SJacob Faibussowitsch {
44463e9753d6SMatthew G. Knepley   DM plex;
44473e9753d6SMatthew G. Knepley 
44483e9753d6SMatthew G. Knepley   PetscFunctionBegin;
44493e9753d6SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
44509566063dSJacob Faibussowitsch   PetscCall(DMConvertPlex_Internal(dm, &plex, PETSC_TRUE));
44519566063dSJacob Faibussowitsch   PetscCall(DMPlexGetDataFVM(plex, NULL, cellgeom, facegeom, NULL));
44529566063dSJacob Faibussowitsch   if (minRadius) PetscCall(DMPlexGetMinRadius(plex, minRadius));
44539566063dSJacob Faibussowitsch   PetscCall(DMDestroy(&plex));
44543ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
44553e9753d6SMatthew G. Knepley }
44563e9753d6SMatthew G. Knepley 
44573e9753d6SMatthew G. Knepley /*@
44583e9753d6SMatthew G. Knepley   DMPlexGetGradientDM - Return gradient data layout
44593e9753d6SMatthew G. Knepley 
446020f4b53cSBarry Smith   Collective
44613e9753d6SMatthew G. Knepley 
44623e9753d6SMatthew G. Knepley   Input Parameters:
4463a1cb98faSBarry Smith + dm - The `DM`
446420f4b53cSBarry Smith - fv - The `PetscFV`
44653e9753d6SMatthew G. Knepley 
44663e9753d6SMatthew G. Knepley   Output Parameter:
44673e9753d6SMatthew G. Knepley . dmGrad - The layout for gradient values
44683e9753d6SMatthew G. Knepley 
44693e9753d6SMatthew G. Knepley   Level: developer
44703e9753d6SMatthew G. Knepley 
44711cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexGetGeometryFVM()`
44723e9753d6SMatthew G. Knepley @*/
4473d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexGetGradientDM(DM dm, PetscFV fv, DM *dmGrad)
4474d71ae5a4SJacob Faibussowitsch {
44753e9753d6SMatthew G. Knepley   DM        plex;
44763e9753d6SMatthew G. Knepley   PetscBool computeGradients;
44773e9753d6SMatthew G. Knepley 
44783e9753d6SMatthew G. Knepley   PetscFunctionBegin;
44793e9753d6SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
44803e9753d6SMatthew G. Knepley   PetscValidHeaderSpecific(fv, PETSCFV_CLASSID, 2);
44814f572ea9SToby Isaac   PetscAssertPointer(dmGrad, 3);
44829566063dSJacob Faibussowitsch   PetscCall(PetscFVGetComputeGradients(fv, &computeGradients));
44839371c9d4SSatish Balay   if (!computeGradients) {
44849371c9d4SSatish Balay     *dmGrad = NULL;
44853ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
44869371c9d4SSatish Balay   }
44879566063dSJacob Faibussowitsch   PetscCall(DMConvertPlex_Internal(dm, &plex, PETSC_TRUE));
44889566063dSJacob Faibussowitsch   PetscCall(DMPlexGetDataFVM(plex, fv, NULL, NULL, dmGrad));
44899566063dSJacob Faibussowitsch   PetscCall(DMDestroy(&plex));
44903ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
44913e9753d6SMatthew G. Knepley }
44923e9753d6SMatthew G. Knepley 
4493d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexComputeBdResidual_Single_Internal(DM dm, PetscReal t, PetscWeakForm wf, PetscFormKey key, Vec locX, Vec locX_t, Vec locF, DMField coordField, IS facetIS)
4494d71ae5a4SJacob Faibussowitsch {
44953e9753d6SMatthew G. Knepley   DM_Plex        *mesh = (DM_Plex *)dm->data;
44963e9753d6SMatthew G. Knepley   DM              plex = NULL, plexA = NULL;
44973e9753d6SMatthew G. Knepley   DMEnclosureType encAux;
44983e9753d6SMatthew G. Knepley   PetscDS         prob, probAux       = NULL;
44993e9753d6SMatthew G. Knepley   PetscSection    section, sectionAux = NULL;
45003e9753d6SMatthew G. Knepley   Vec             locA = NULL;
45013e9753d6SMatthew G. Knepley   PetscScalar    *u = NULL, *u_t = NULL, *a = NULL, *elemVec = NULL;
45023e9753d6SMatthew G. Knepley   PetscInt        totDim, totDimAux = 0;
45033e9753d6SMatthew G. Knepley 
45043e9753d6SMatthew G. Knepley   PetscFunctionBegin;
45059566063dSJacob Faibussowitsch   PetscCall(DMConvert(dm, DMPLEX, &plex));
45069566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dm, &section));
45079566063dSJacob Faibussowitsch   PetscCall(DMGetDS(dm, &prob));
45089566063dSJacob Faibussowitsch   PetscCall(PetscDSGetTotalDimension(prob, &totDim));
45099566063dSJacob Faibussowitsch   PetscCall(DMGetAuxiliaryVec(dm, key.label, key.value, key.part, &locA));
45103e9753d6SMatthew G. Knepley   if (locA) {
45113e9753d6SMatthew G. Knepley     DM dmAux;
45123e9753d6SMatthew G. Knepley 
45139566063dSJacob Faibussowitsch     PetscCall(VecGetDM(locA, &dmAux));
45149566063dSJacob Faibussowitsch     PetscCall(DMGetEnclosureRelation(dmAux, dm, &encAux));
45159566063dSJacob Faibussowitsch     PetscCall(DMConvert(dmAux, DMPLEX, &plexA));
45169566063dSJacob Faibussowitsch     PetscCall(DMGetDS(plexA, &probAux));
45179566063dSJacob Faibussowitsch     PetscCall(PetscDSGetTotalDimension(probAux, &totDimAux));
45189566063dSJacob Faibussowitsch     PetscCall(DMGetLocalSection(plexA, &sectionAux));
45193e9753d6SMatthew G. Knepley   }
45200c290148SMatthew G. Knepley   {
45213e9753d6SMatthew G. Knepley     PetscFEGeom    *fgeom;
45223e9753d6SMatthew G. Knepley     PetscInt        maxDegree;
45233e9753d6SMatthew G. Knepley     PetscQuadrature qGeom = NULL;
45243e9753d6SMatthew G. Knepley     IS              pointIS;
45253e9753d6SMatthew G. Knepley     const PetscInt *points;
45263e9753d6SMatthew G. Knepley     PetscInt        numFaces, face, Nq;
45273e9753d6SMatthew G. Knepley 
45289566063dSJacob Faibussowitsch     PetscCall(DMLabelGetStratumIS(key.label, key.value, &pointIS));
45290c290148SMatthew G. Knepley     if (!pointIS) goto end; /* No points with that id on this process */
45303e9753d6SMatthew G. Knepley     {
45313e9753d6SMatthew G. Knepley       IS isectIS;
45323e9753d6SMatthew G. Knepley 
45333e9753d6SMatthew G. Knepley       /* TODO: Special cases of ISIntersect where it is quick to check a priori if one is a superset of the other */
45349566063dSJacob Faibussowitsch       PetscCall(ISIntersect_Caching_Internal(facetIS, pointIS, &isectIS));
45359566063dSJacob Faibussowitsch       PetscCall(ISDestroy(&pointIS));
45363e9753d6SMatthew G. Knepley       pointIS = isectIS;
45373e9753d6SMatthew G. Knepley     }
45389566063dSJacob Faibussowitsch     PetscCall(ISGetLocalSize(pointIS, &numFaces));
45399566063dSJacob Faibussowitsch     PetscCall(ISGetIndices(pointIS, &points));
45409566063dSJacob Faibussowitsch     PetscCall(PetscMalloc4(numFaces * totDim, &u, locX_t ? numFaces * totDim : 0, &u_t, numFaces * totDim, &elemVec, locA ? numFaces * totDimAux : 0, &a));
45419566063dSJacob Faibussowitsch     PetscCall(DMFieldGetDegree(coordField, pointIS, NULL, &maxDegree));
454248a46eb9SPierre Jolivet     if (maxDegree <= 1) PetscCall(DMFieldCreateDefaultQuadrature(coordField, pointIS, &qGeom));
45433e9753d6SMatthew G. Knepley     if (!qGeom) {
45443e9753d6SMatthew G. Knepley       PetscFE fe;
45453e9753d6SMatthew G. Knepley 
45469566063dSJacob Faibussowitsch       PetscCall(PetscDSGetDiscretization(prob, key.field, (PetscObject *)&fe));
45479566063dSJacob Faibussowitsch       PetscCall(PetscFEGetFaceQuadrature(fe, &qGeom));
45489566063dSJacob Faibussowitsch       PetscCall(PetscObjectReference((PetscObject)qGeom));
45493e9753d6SMatthew G. Knepley     }
45509566063dSJacob Faibussowitsch     PetscCall(PetscQuadratureGetData(qGeom, NULL, NULL, &Nq, NULL, NULL));
45519566063dSJacob Faibussowitsch     PetscCall(DMSNESGetFEGeom(coordField, pointIS, qGeom, PETSC_TRUE, &fgeom));
45523e9753d6SMatthew G. Knepley     for (face = 0; face < numFaces; ++face) {
4553f15274beSMatthew Knepley       const PetscInt point = points[face], *support;
45543e9753d6SMatthew G. Knepley       PetscScalar   *x     = NULL;
4555f15274beSMatthew Knepley       PetscInt       i;
45563e9753d6SMatthew G. Knepley 
45579566063dSJacob Faibussowitsch       PetscCall(DMPlexGetSupport(dm, point, &support));
45589566063dSJacob Faibussowitsch       PetscCall(DMPlexVecGetClosure(plex, section, locX, support[0], NULL, &x));
45593e9753d6SMatthew G. Knepley       for (i = 0; i < totDim; ++i) u[face * totDim + i] = x[i];
45609566063dSJacob Faibussowitsch       PetscCall(DMPlexVecRestoreClosure(plex, section, locX, support[0], NULL, &x));
45613e9753d6SMatthew G. Knepley       if (locX_t) {
45629566063dSJacob Faibussowitsch         PetscCall(DMPlexVecGetClosure(plex, section, locX_t, support[0], NULL, &x));
45633e9753d6SMatthew G. Knepley         for (i = 0; i < totDim; ++i) u_t[face * totDim + i] = x[i];
45649566063dSJacob Faibussowitsch         PetscCall(DMPlexVecRestoreClosure(plex, section, locX_t, support[0], NULL, &x));
45653e9753d6SMatthew G. Knepley       }
45663e9753d6SMatthew G. Knepley       if (locA) {
45673e9753d6SMatthew G. Knepley         PetscInt subp;
45683e9753d6SMatthew G. Knepley 
45699566063dSJacob Faibussowitsch         PetscCall(DMGetEnclosurePoint(plexA, dm, encAux, support[0], &subp));
45709566063dSJacob Faibussowitsch         PetscCall(DMPlexVecGetClosure(plexA, sectionAux, locA, subp, NULL, &x));
45713e9753d6SMatthew G. Knepley         for (i = 0; i < totDimAux; ++i) a[face * totDimAux + i] = x[i];
45729566063dSJacob Faibussowitsch         PetscCall(DMPlexVecRestoreClosure(plexA, sectionAux, locA, subp, NULL, &x));
45733e9753d6SMatthew G. Knepley       }
45743e9753d6SMatthew G. Knepley     }
45759566063dSJacob Faibussowitsch     PetscCall(PetscArrayzero(elemVec, numFaces * totDim));
45763e9753d6SMatthew G. Knepley     {
45773e9753d6SMatthew G. Knepley       PetscFE      fe;
45783e9753d6SMatthew G. Knepley       PetscInt     Nb;
45793e9753d6SMatthew G. Knepley       PetscFEGeom *chunkGeom = NULL;
45803e9753d6SMatthew G. Knepley       /* Conforming batches */
45813e9753d6SMatthew G. Knepley       PetscInt numChunks, numBatches, numBlocks, Ne, blockSize, batchSize;
45823e9753d6SMatthew G. Knepley       /* Remainder */
45833e9753d6SMatthew G. Knepley       PetscInt Nr, offset;
45843e9753d6SMatthew G. Knepley 
45859566063dSJacob Faibussowitsch       PetscCall(PetscDSGetDiscretization(prob, key.field, (PetscObject *)&fe));
45869566063dSJacob Faibussowitsch       PetscCall(PetscFEGetDimension(fe, &Nb));
45879566063dSJacob Faibussowitsch       PetscCall(PetscFEGetTileSizes(fe, NULL, &numBlocks, NULL, &numBatches));
45883e9753d6SMatthew G. Knepley       /* TODO: documentation is unclear about what is going on with these numbers: how should Nb / Nq factor in ? */
45893e9753d6SMatthew G. Knepley       blockSize = Nb;
45903e9753d6SMatthew G. Knepley       batchSize = numBlocks * blockSize;
45919566063dSJacob Faibussowitsch       PetscCall(PetscFESetTileSizes(fe, blockSize, numBlocks, batchSize, numBatches));
45923e9753d6SMatthew G. Knepley       numChunks = numFaces / (numBatches * batchSize);
45933e9753d6SMatthew G. Knepley       Ne        = numChunks * numBatches * batchSize;
45943e9753d6SMatthew G. Knepley       Nr        = numFaces % (numBatches * batchSize);
45953e9753d6SMatthew G. Knepley       offset    = numFaces - Nr;
45969566063dSJacob Faibussowitsch       PetscCall(PetscFEGeomGetChunk(fgeom, 0, offset, &chunkGeom));
45979566063dSJacob Faibussowitsch       PetscCall(PetscFEIntegrateBdResidual(prob, wf, key, Ne, chunkGeom, u, u_t, probAux, a, t, elemVec));
45989566063dSJacob Faibussowitsch       PetscCall(PetscFEGeomRestoreChunk(fgeom, 0, offset, &chunkGeom));
45999566063dSJacob Faibussowitsch       PetscCall(PetscFEGeomGetChunk(fgeom, offset, numFaces, &chunkGeom));
46009566063dSJacob Faibussowitsch       PetscCall(PetscFEIntegrateBdResidual(prob, wf, key, Nr, chunkGeom, &u[offset * totDim], u_t ? &u_t[offset * totDim] : NULL, probAux, a ? &a[offset * totDimAux] : NULL, t, &elemVec[offset * totDim]));
46019566063dSJacob Faibussowitsch       PetscCall(PetscFEGeomRestoreChunk(fgeom, offset, numFaces, &chunkGeom));
46023e9753d6SMatthew G. Knepley     }
46033e9753d6SMatthew G. Knepley     for (face = 0; face < numFaces; ++face) {
46043e9753d6SMatthew G. Knepley       const PetscInt point = points[face], *support;
46053e9753d6SMatthew G. Knepley 
46069566063dSJacob Faibussowitsch       if (mesh->printFEM > 1) PetscCall(DMPrintCellVector(point, "BdResidual", totDim, &elemVec[face * totDim]));
46079566063dSJacob Faibussowitsch       PetscCall(DMPlexGetSupport(plex, point, &support));
46089566063dSJacob Faibussowitsch       PetscCall(DMPlexVecSetClosure(plex, NULL, locF, support[0], &elemVec[face * totDim], ADD_ALL_VALUES));
46093e9753d6SMatthew G. Knepley     }
46109566063dSJacob Faibussowitsch     PetscCall(DMSNESRestoreFEGeom(coordField, pointIS, qGeom, PETSC_TRUE, &fgeom));
46119566063dSJacob Faibussowitsch     PetscCall(PetscQuadratureDestroy(&qGeom));
46129566063dSJacob Faibussowitsch     PetscCall(ISRestoreIndices(pointIS, &points));
46139566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&pointIS));
46149566063dSJacob Faibussowitsch     PetscCall(PetscFree4(u, u_t, elemVec, a));
46153e9753d6SMatthew G. Knepley   }
46160c290148SMatthew G. Knepley end:
46179566063dSJacob Faibussowitsch   PetscCall(DMDestroy(&plex));
46189566063dSJacob Faibussowitsch   PetscCall(DMDestroy(&plexA));
46193ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
46203e9753d6SMatthew G. Knepley }
46213e9753d6SMatthew G. Knepley 
4622d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeBdResidualSingle(DM dm, PetscReal t, PetscWeakForm wf, PetscFormKey key, Vec locX, Vec locX_t, Vec locF)
4623d71ae5a4SJacob Faibussowitsch {
46243e9753d6SMatthew G. Knepley   DMField  coordField;
46253e9753d6SMatthew G. Knepley   DMLabel  depthLabel;
46263e9753d6SMatthew G. Knepley   IS       facetIS;
46273e9753d6SMatthew G. Knepley   PetscInt dim;
46283e9753d6SMatthew G. Knepley 
46293e9753d6SMatthew G. Knepley   PetscFunctionBegin;
46309566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dm, &dim));
46319566063dSJacob Faibussowitsch   PetscCall(DMPlexGetDepthLabel(dm, &depthLabel));
46329566063dSJacob Faibussowitsch   PetscCall(DMLabelGetStratumIS(depthLabel, dim - 1, &facetIS));
46339566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateField(dm, &coordField));
46349566063dSJacob Faibussowitsch   PetscCall(DMPlexComputeBdResidual_Single_Internal(dm, t, wf, key, locX, locX_t, locF, coordField, facetIS));
46359566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&facetIS));
46363ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
46373e9753d6SMatthew G. Knepley }
46383e9753d6SMatthew G. Knepley 
4639*a4e35b19SJacob Faibussowitsch static PetscErrorCode DMPlexComputeBdResidual_Internal(DM dm, Vec locX, Vec locX_t, PetscReal t, Vec locF, void *user)
4640d71ae5a4SJacob Faibussowitsch {
46413e9753d6SMatthew G. Knepley   PetscDS  prob;
46423e9753d6SMatthew G. Knepley   PetscInt numBd, bd;
46433e9753d6SMatthew G. Knepley   DMField  coordField = NULL;
46443e9753d6SMatthew G. Knepley   IS       facetIS    = NULL;
46453e9753d6SMatthew G. Knepley   DMLabel  depthLabel;
46463e9753d6SMatthew G. Knepley   PetscInt dim;
46473e9753d6SMatthew G. Knepley 
46483e9753d6SMatthew G. Knepley   PetscFunctionBegin;
46499566063dSJacob Faibussowitsch   PetscCall(DMGetDS(dm, &prob));
46509566063dSJacob Faibussowitsch   PetscCall(DMPlexGetDepthLabel(dm, &depthLabel));
46519566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dm, &dim));
46529566063dSJacob Faibussowitsch   PetscCall(DMLabelGetStratumIS(depthLabel, dim - 1, &facetIS));
46539566063dSJacob Faibussowitsch   PetscCall(PetscDSGetNumBoundary(prob, &numBd));
46543e9753d6SMatthew G. Knepley   for (bd = 0; bd < numBd; ++bd) {
465545480ffeSMatthew G. Knepley     PetscWeakForm           wf;
46563e9753d6SMatthew G. Knepley     DMBoundaryConditionType type;
46573e9753d6SMatthew G. Knepley     DMLabel                 label;
46583e9753d6SMatthew G. Knepley     const PetscInt         *values;
46590c290148SMatthew G. Knepley     PetscInt                field, numValues, v;
46603e9753d6SMatthew G. Knepley     PetscObject             obj;
46613e9753d6SMatthew G. Knepley     PetscClassId            id;
46620c290148SMatthew G. Knepley     PetscFormKey            key;
46633e9753d6SMatthew G. Knepley 
46649566063dSJacob Faibussowitsch     PetscCall(PetscDSGetBoundary(prob, bd, &wf, &type, NULL, &label, &numValues, &values, &field, NULL, NULL, NULL, NULL, NULL));
46653d3e5d66SMatthew G. Knepley     if (type & DM_BC_ESSENTIAL) continue;
46669566063dSJacob Faibussowitsch     PetscCall(PetscDSGetDiscretization(prob, field, &obj));
46679566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetClassId(obj, &id));
46683d3e5d66SMatthew G. Knepley     if (id != PETSCFE_CLASSID) continue;
46693e9753d6SMatthew G. Knepley     if (!facetIS) {
46703e9753d6SMatthew G. Knepley       DMLabel  depthLabel;
46713e9753d6SMatthew G. Knepley       PetscInt dim;
46723e9753d6SMatthew G. Knepley 
46739566063dSJacob Faibussowitsch       PetscCall(DMPlexGetDepthLabel(dm, &depthLabel));
46749566063dSJacob Faibussowitsch       PetscCall(DMGetDimension(dm, &dim));
46759566063dSJacob Faibussowitsch       PetscCall(DMLabelGetStratumIS(depthLabel, dim - 1, &facetIS));
46763e9753d6SMatthew G. Knepley     }
46779566063dSJacob Faibussowitsch     PetscCall(DMGetCoordinateField(dm, &coordField));
46780c290148SMatthew G. Knepley     for (v = 0; v < numValues; ++v) {
46790c290148SMatthew G. Knepley       key.label = label;
46800c290148SMatthew G. Knepley       key.value = values[v];
46810c290148SMatthew G. Knepley       key.field = field;
46820c290148SMatthew G. Knepley       key.part  = 0;
46839566063dSJacob Faibussowitsch       PetscCall(DMPlexComputeBdResidual_Single_Internal(dm, t, wf, key, locX, locX_t, locF, coordField, facetIS));
46840c290148SMatthew G. Knepley     }
46853e9753d6SMatthew G. Knepley   }
46869566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&facetIS));
46873ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
46883e9753d6SMatthew G. Knepley }
46893e9753d6SMatthew G. Knepley 
4690d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeResidual_Internal(DM dm, PetscFormKey key, IS cellIS, PetscReal time, Vec locX, Vec locX_t, PetscReal t, Vec locF, void *user)
4691d71ae5a4SJacob Faibussowitsch {
46923e9753d6SMatthew G. Knepley   DM_Plex         *mesh       = (DM_Plex *)dm->data;
46933e9753d6SMatthew G. Knepley   const char      *name       = "Residual";
46943e9753d6SMatthew G. Knepley   DM               dmAux      = NULL;
46953e9753d6SMatthew G. Knepley   DM               dmGrad     = NULL;
46963e9753d6SMatthew G. Knepley   DMLabel          ghostLabel = NULL;
46976528b96dSMatthew G. Knepley   PetscDS          ds         = NULL;
46986528b96dSMatthew G. Knepley   PetscDS          dsAux      = NULL;
46993e9753d6SMatthew G. Knepley   PetscSection     section    = NULL;
47003e9753d6SMatthew G. Knepley   PetscBool        useFEM     = PETSC_FALSE;
47013e9753d6SMatthew G. Knepley   PetscBool        useFVM     = PETSC_FALSE;
47023e9753d6SMatthew G. Knepley   PetscBool        isImplicit = (locX_t || time == PETSC_MIN_REAL) ? PETSC_TRUE : PETSC_FALSE;
47033e9753d6SMatthew G. Knepley   PetscFV          fvm        = NULL;
47043e9753d6SMatthew G. Knepley   PetscFVCellGeom *cgeomFVM   = NULL;
47053e9753d6SMatthew G. Knepley   PetscFVFaceGeom *fgeomFVM   = NULL;
47063e9753d6SMatthew G. Knepley   DMField          coordField = NULL;
47073e9753d6SMatthew G. Knepley   Vec              locA, cellGeometryFVM = NULL, faceGeometryFVM = NULL, grad, locGrad = NULL;
47083e9753d6SMatthew G. Knepley   PetscScalar     *u = NULL, *u_t, *a, *uL, *uR;
47093e9753d6SMatthew G. Knepley   IS               chunkIS;
47103e9753d6SMatthew G. Knepley   const PetscInt  *cells;
47113e9753d6SMatthew G. Knepley   PetscInt         cStart, cEnd, numCells;
47123e9753d6SMatthew G. Knepley   PetscInt         Nf, f, totDim, totDimAux, numChunks, cellChunkSize, faceChunkSize, chunk, fStart, fEnd;
47133e9753d6SMatthew G. Knepley   PetscInt         maxDegree  = PETSC_MAX_INT;
47143e9753d6SMatthew G. Knepley   PetscQuadrature  affineQuad = NULL, *quads = NULL;
47153e9753d6SMatthew G. Knepley   PetscFEGeom     *affineGeom = NULL, **geoms = NULL;
47163e9753d6SMatthew G. Knepley 
47173e9753d6SMatthew G. Knepley   PetscFunctionBegin;
47183ba16761SJacob Faibussowitsch   if (!cellIS) PetscFunctionReturn(PETSC_SUCCESS);
4719437e83fbSMatthew G. Knepley   PetscCall(ISGetPointRange(cellIS, &cStart, &cEnd, &cells));
47203ba16761SJacob Faibussowitsch   if (cStart >= cEnd) PetscFunctionReturn(PETSC_SUCCESS);
47219566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(DMPLEX_ResidualFEM, dm, 0, 0, 0));
47223e9753d6SMatthew G. Knepley   /* TODO The places where we have to use isFE are probably the member functions for the PetscDisc class */
47233e9753d6SMatthew G. Knepley   /* TODO The FVM geometry is over-manipulated. Make the precalc functions return exactly what we need */
47243e9753d6SMatthew G. Knepley   /* FEM+FVM */
47259566063dSJacob Faibussowitsch   PetscCall(DMPlexGetHeightStratum(dm, 1, &fStart, &fEnd));
47263e9753d6SMatthew G. Knepley   /* 1: Get sizes from dm and dmAux */
47279566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dm, &section));
47289566063dSJacob Faibussowitsch   PetscCall(DMGetLabel(dm, "ghost", &ghostLabel));
472907218a29SMatthew G. Knepley   PetscCall(DMGetCellDS(dm, cells ? cells[cStart] : cStart, &ds, NULL));
47309566063dSJacob Faibussowitsch   PetscCall(PetscDSGetNumFields(ds, &Nf));
47319566063dSJacob Faibussowitsch   PetscCall(PetscDSGetTotalDimension(ds, &totDim));
47329566063dSJacob Faibussowitsch   PetscCall(DMGetAuxiliaryVec(dm, key.label, key.value, key.part, &locA));
47333e9753d6SMatthew G. Knepley   if (locA) {
47343e9753d6SMatthew G. Knepley     PetscInt subcell;
47359566063dSJacob Faibussowitsch     PetscCall(VecGetDM(locA, &dmAux));
47361059d808SMatthew G. Knepley     PetscCall(DMGetEnclosurePoint(dmAux, dm, DM_ENC_UNKNOWN, cells ? cells[cStart] : cStart, &subcell));
473707218a29SMatthew G. Knepley     PetscCall(DMGetCellDS(dmAux, subcell, &dsAux, NULL));
47389566063dSJacob Faibussowitsch     PetscCall(PetscDSGetTotalDimension(dsAux, &totDimAux));
47393e9753d6SMatthew G. Knepley   }
47403e9753d6SMatthew G. Knepley   /* 2: Get geometric data */
47413e9753d6SMatthew G. Knepley   for (f = 0; f < Nf; ++f) {
47423e9753d6SMatthew G. Knepley     PetscObject  obj;
47433e9753d6SMatthew G. Knepley     PetscClassId id;
47443e9753d6SMatthew G. Knepley     PetscBool    fimp;
47453e9753d6SMatthew G. Knepley 
47469566063dSJacob Faibussowitsch     PetscCall(PetscDSGetImplicit(ds, f, &fimp));
47473e9753d6SMatthew G. Knepley     if (isImplicit != fimp) continue;
47489566063dSJacob Faibussowitsch     PetscCall(PetscDSGetDiscretization(ds, f, &obj));
47499566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetClassId(obj, &id));
4750ad540459SPierre Jolivet     if (id == PETSCFE_CLASSID) useFEM = PETSC_TRUE;
47519371c9d4SSatish Balay     if (id == PETSCFV_CLASSID) {
47529371c9d4SSatish Balay       useFVM = PETSC_TRUE;
47539371c9d4SSatish Balay       fvm    = (PetscFV)obj;
47549371c9d4SSatish Balay     }
47553e9753d6SMatthew G. Knepley   }
47563e9753d6SMatthew G. Knepley   if (useFEM) {
47579566063dSJacob Faibussowitsch     PetscCall(DMGetCoordinateField(dm, &coordField));
47589566063dSJacob Faibussowitsch     PetscCall(DMFieldGetDegree(coordField, cellIS, NULL, &maxDegree));
47593e9753d6SMatthew G. Knepley     if (maxDegree <= 1) {
47609566063dSJacob Faibussowitsch       PetscCall(DMFieldCreateDefaultQuadrature(coordField, cellIS, &affineQuad));
476148a46eb9SPierre Jolivet       if (affineQuad) PetscCall(DMSNESGetFEGeom(coordField, cellIS, affineQuad, PETSC_FALSE, &affineGeom));
47623e9753d6SMatthew G. Knepley     } else {
47639566063dSJacob Faibussowitsch       PetscCall(PetscCalloc2(Nf, &quads, Nf, &geoms));
47643e9753d6SMatthew G. Knepley       for (f = 0; f < Nf; ++f) {
47653e9753d6SMatthew G. Knepley         PetscObject  obj;
47663e9753d6SMatthew G. Knepley         PetscClassId id;
47673e9753d6SMatthew G. Knepley         PetscBool    fimp;
47683e9753d6SMatthew G. Knepley 
47699566063dSJacob Faibussowitsch         PetscCall(PetscDSGetImplicit(ds, f, &fimp));
47703e9753d6SMatthew G. Knepley         if (isImplicit != fimp) continue;
47719566063dSJacob Faibussowitsch         PetscCall(PetscDSGetDiscretization(ds, f, &obj));
47729566063dSJacob Faibussowitsch         PetscCall(PetscObjectGetClassId(obj, &id));
47733e9753d6SMatthew G. Knepley         if (id == PETSCFE_CLASSID) {
47743e9753d6SMatthew G. Knepley           PetscFE fe = (PetscFE)obj;
47753e9753d6SMatthew G. Knepley 
47769566063dSJacob Faibussowitsch           PetscCall(PetscFEGetQuadrature(fe, &quads[f]));
47779566063dSJacob Faibussowitsch           PetscCall(PetscObjectReference((PetscObject)quads[f]));
47789566063dSJacob Faibussowitsch           PetscCall(DMSNESGetFEGeom(coordField, cellIS, quads[f], PETSC_FALSE, &geoms[f]));
47793e9753d6SMatthew G. Knepley         }
47803e9753d6SMatthew G. Knepley       }
47813e9753d6SMatthew G. Knepley     }
47823e9753d6SMatthew G. Knepley   }
47833e9753d6SMatthew G. Knepley   if (useFVM) {
47849566063dSJacob Faibussowitsch     PetscCall(DMPlexGetGeometryFVM(dm, &faceGeometryFVM, &cellGeometryFVM, NULL));
47859566063dSJacob Faibussowitsch     PetscCall(VecGetArrayRead(faceGeometryFVM, (const PetscScalar **)&fgeomFVM));
47869566063dSJacob Faibussowitsch     PetscCall(VecGetArrayRead(cellGeometryFVM, (const PetscScalar **)&cgeomFVM));
47873e9753d6SMatthew G. Knepley     /* Reconstruct and limit cell gradients */
47889566063dSJacob Faibussowitsch     PetscCall(DMPlexGetGradientDM(dm, fvm, &dmGrad));
47893e9753d6SMatthew G. Knepley     if (dmGrad) {
47909566063dSJacob Faibussowitsch       PetscCall(DMPlexGetHeightStratum(dm, 1, &fStart, &fEnd));
47919566063dSJacob Faibussowitsch       PetscCall(DMGetGlobalVector(dmGrad, &grad));
47929566063dSJacob Faibussowitsch       PetscCall(DMPlexReconstructGradients_Internal(dm, fvm, fStart, fEnd, faceGeometryFVM, cellGeometryFVM, locX, grad));
47933e9753d6SMatthew G. Knepley       /* Communicate gradient values */
47949566063dSJacob Faibussowitsch       PetscCall(DMGetLocalVector(dmGrad, &locGrad));
47959566063dSJacob Faibussowitsch       PetscCall(DMGlobalToLocalBegin(dmGrad, grad, INSERT_VALUES, locGrad));
47969566063dSJacob Faibussowitsch       PetscCall(DMGlobalToLocalEnd(dmGrad, grad, INSERT_VALUES, locGrad));
47979566063dSJacob Faibussowitsch       PetscCall(DMRestoreGlobalVector(dmGrad, &grad));
47983e9753d6SMatthew G. Knepley     }
47993e9753d6SMatthew G. Knepley     /* Handle non-essential (e.g. outflow) boundary values */
48009566063dSJacob Faibussowitsch     PetscCall(DMPlexInsertBoundaryValues(dm, PETSC_FALSE, locX, time, faceGeometryFVM, cellGeometryFVM, locGrad));
48013e9753d6SMatthew G. Knepley   }
48023e9753d6SMatthew G. Knepley   /* Loop over chunks */
48039566063dSJacob Faibussowitsch   if (useFEM) PetscCall(ISCreate(PETSC_COMM_SELF, &chunkIS));
48043e9753d6SMatthew G. Knepley   numCells      = cEnd - cStart;
48053e9753d6SMatthew G. Knepley   numChunks     = 1;
48063e9753d6SMatthew G. Knepley   cellChunkSize = numCells / numChunks;
48073e9753d6SMatthew G. Knepley   faceChunkSize = (fEnd - fStart) / numChunks;
48083e9753d6SMatthew G. Knepley   numChunks     = PetscMin(1, numCells);
48093e9753d6SMatthew G. Knepley   for (chunk = 0; chunk < numChunks; ++chunk) {
48103e9753d6SMatthew G. Knepley     PetscScalar     *elemVec, *fluxL, *fluxR;
48113e9753d6SMatthew G. Knepley     PetscReal       *vol;
48123e9753d6SMatthew G. Knepley     PetscFVFaceGeom *fgeom;
48133e9753d6SMatthew G. Knepley     PetscInt         cS = cStart + chunk * cellChunkSize, cE = PetscMin(cS + cellChunkSize, cEnd), numCells = cE - cS, c;
48143e9753d6SMatthew G. Knepley     PetscInt         fS = fStart + chunk * faceChunkSize, fE = PetscMin(fS + faceChunkSize, fEnd), numFaces = 0, face;
48153e9753d6SMatthew G. Knepley 
48163e9753d6SMatthew G. Knepley     /* Extract field coefficients */
48173e9753d6SMatthew G. Knepley     if (useFEM) {
48189566063dSJacob Faibussowitsch       PetscCall(ISGetPointSubrange(chunkIS, cS, cE, cells));
48199566063dSJacob Faibussowitsch       PetscCall(DMPlexGetCellFields(dm, chunkIS, locX, locX_t, locA, &u, &u_t, &a));
48209566063dSJacob Faibussowitsch       PetscCall(DMGetWorkArray(dm, numCells * totDim, MPIU_SCALAR, &elemVec));
48219566063dSJacob Faibussowitsch       PetscCall(PetscArrayzero(elemVec, numCells * totDim));
48223e9753d6SMatthew G. Knepley     }
48233e9753d6SMatthew G. Knepley     if (useFVM) {
48249566063dSJacob Faibussowitsch       PetscCall(DMPlexGetFaceFields(dm, fS, fE, locX, locX_t, faceGeometryFVM, cellGeometryFVM, locGrad, &numFaces, &uL, &uR));
48259566063dSJacob Faibussowitsch       PetscCall(DMPlexGetFaceGeometry(dm, fS, fE, faceGeometryFVM, cellGeometryFVM, &numFaces, &fgeom, &vol));
48269566063dSJacob Faibussowitsch       PetscCall(DMGetWorkArray(dm, numFaces * totDim, MPIU_SCALAR, &fluxL));
48279566063dSJacob Faibussowitsch       PetscCall(DMGetWorkArray(dm, numFaces * totDim, MPIU_SCALAR, &fluxR));
48289566063dSJacob Faibussowitsch       PetscCall(PetscArrayzero(fluxL, numFaces * totDim));
48299566063dSJacob Faibussowitsch       PetscCall(PetscArrayzero(fluxR, numFaces * totDim));
48303e9753d6SMatthew G. Knepley     }
48313e9753d6SMatthew G. Knepley     /* TODO We will interlace both our field coefficients (u, u_t, uL, uR, etc.) and our output (elemVec, fL, fR). I think this works */
48323e9753d6SMatthew G. Knepley     /* Loop over fields */
48333e9753d6SMatthew G. Knepley     for (f = 0; f < Nf; ++f) {
48343e9753d6SMatthew G. Knepley       PetscObject  obj;
48353e9753d6SMatthew G. Knepley       PetscClassId id;
48363e9753d6SMatthew G. Knepley       PetscBool    fimp;
48373e9753d6SMatthew G. Knepley       PetscInt     numChunks, numBatches, batchSize, numBlocks, blockSize, Ne, Nr, offset;
48383e9753d6SMatthew G. Knepley 
48396528b96dSMatthew G. Knepley       key.field = f;
48409566063dSJacob Faibussowitsch       PetscCall(PetscDSGetImplicit(ds, f, &fimp));
48413e9753d6SMatthew G. Knepley       if (isImplicit != fimp) continue;
48429566063dSJacob Faibussowitsch       PetscCall(PetscDSGetDiscretization(ds, f, &obj));
48439566063dSJacob Faibussowitsch       PetscCall(PetscObjectGetClassId(obj, &id));
48443e9753d6SMatthew G. Knepley       if (id == PETSCFE_CLASSID) {
48453e9753d6SMatthew G. Knepley         PetscFE         fe        = (PetscFE)obj;
48463e9753d6SMatthew G. Knepley         PetscFEGeom    *geom      = affineGeom ? affineGeom : geoms[f];
48473e9753d6SMatthew G. Knepley         PetscFEGeom    *chunkGeom = NULL;
48483e9753d6SMatthew G. Knepley         PetscQuadrature quad      = affineQuad ? affineQuad : quads[f];
48493e9753d6SMatthew G. Knepley         PetscInt        Nq, Nb;
48503e9753d6SMatthew G. Knepley 
48519566063dSJacob Faibussowitsch         PetscCall(PetscFEGetTileSizes(fe, NULL, &numBlocks, NULL, &numBatches));
48529566063dSJacob Faibussowitsch         PetscCall(PetscQuadratureGetData(quad, NULL, NULL, &Nq, NULL, NULL));
48539566063dSJacob Faibussowitsch         PetscCall(PetscFEGetDimension(fe, &Nb));
48543e9753d6SMatthew G. Knepley         blockSize = Nb;
48553e9753d6SMatthew G. Knepley         batchSize = numBlocks * blockSize;
48569566063dSJacob Faibussowitsch         PetscCall(PetscFESetTileSizes(fe, blockSize, numBlocks, batchSize, numBatches));
48573e9753d6SMatthew G. Knepley         numChunks = numCells / (numBatches * batchSize);
48583e9753d6SMatthew G. Knepley         Ne        = numChunks * numBatches * batchSize;
48593e9753d6SMatthew G. Knepley         Nr        = numCells % (numBatches * batchSize);
48603e9753d6SMatthew G. Knepley         offset    = numCells - Nr;
48613e9753d6SMatthew G. Knepley         /* Integrate FE residual to get elemVec (need fields at quadrature points) */
48623e9753d6SMatthew G. Knepley         /*   For FV, I think we use a P0 basis and the cell coefficients (for subdivided cells, we can tweak the basis tabulation to be the indicator function) */
48639566063dSJacob Faibussowitsch         PetscCall(PetscFEGeomGetChunk(geom, 0, offset, &chunkGeom));
48649566063dSJacob Faibussowitsch         PetscCall(PetscFEIntegrateResidual(ds, key, Ne, chunkGeom, u, u_t, dsAux, a, t, elemVec));
48659566063dSJacob Faibussowitsch         PetscCall(PetscFEGeomGetChunk(geom, offset, numCells, &chunkGeom));
4866072f5ffdSStefano Zampini         PetscCall(PetscFEIntegrateResidual(ds, key, Nr, chunkGeom, &u[offset * totDim], u_t ? &u_t[offset * totDim] : NULL, dsAux, a ? &a[offset * totDimAux] : NULL, t, &elemVec[offset * totDim]));
48679566063dSJacob Faibussowitsch         PetscCall(PetscFEGeomRestoreChunk(geom, offset, numCells, &chunkGeom));
48683e9753d6SMatthew G. Knepley       } else if (id == PETSCFV_CLASSID) {
48693e9753d6SMatthew G. Knepley         PetscFV fv = (PetscFV)obj;
48703e9753d6SMatthew G. Knepley 
48713e9753d6SMatthew G. Knepley         Ne = numFaces;
48723e9753d6SMatthew G. Knepley         /* Riemann solve over faces (need fields at face centroids) */
48733e9753d6SMatthew G. Knepley         /*   We need to evaluate FE fields at those coordinates */
48749566063dSJacob Faibussowitsch         PetscCall(PetscFVIntegrateRHSFunction(fv, ds, f, Ne, fgeom, vol, uL, uR, fluxL, fluxR));
487563a3b9bcSJacob Faibussowitsch       } else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, f);
48763e9753d6SMatthew G. Knepley     }
48773e9753d6SMatthew G. Knepley     /* Loop over domain */
48783e9753d6SMatthew G. Knepley     if (useFEM) {
48793e9753d6SMatthew G. Knepley       /* Add elemVec to locX */
48803e9753d6SMatthew G. Knepley       for (c = cS; c < cE; ++c) {
48813e9753d6SMatthew G. Knepley         const PetscInt cell = cells ? cells[c] : c;
48823e9753d6SMatthew G. Knepley         const PetscInt cind = c - cStart;
48833e9753d6SMatthew G. Knepley 
48849566063dSJacob Faibussowitsch         if (mesh->printFEM > 1) PetscCall(DMPrintCellVector(cell, name, totDim, &elemVec[cind * totDim]));
48853e9753d6SMatthew G. Knepley         if (ghostLabel) {
48863e9753d6SMatthew G. Knepley           PetscInt ghostVal;
48873e9753d6SMatthew G. Knepley 
48889566063dSJacob Faibussowitsch           PetscCall(DMLabelGetValue(ghostLabel, cell, &ghostVal));
48893e9753d6SMatthew G. Knepley           if (ghostVal > 0) continue;
48903e9753d6SMatthew G. Knepley         }
48919566063dSJacob Faibussowitsch         PetscCall(DMPlexVecSetClosure(dm, section, locF, cell, &elemVec[cind * totDim], ADD_ALL_VALUES));
48923e9753d6SMatthew G. Knepley       }
48933e9753d6SMatthew G. Knepley     }
48943e9753d6SMatthew G. Knepley     if (useFVM) {
48953e9753d6SMatthew G. Knepley       PetscScalar *fa;
48963e9753d6SMatthew G. Knepley       PetscInt     iface;
48973e9753d6SMatthew G. Knepley 
48989566063dSJacob Faibussowitsch       PetscCall(VecGetArray(locF, &fa));
48993e9753d6SMatthew G. Knepley       for (f = 0; f < Nf; ++f) {
49003e9753d6SMatthew G. Knepley         PetscFV      fv;
49013e9753d6SMatthew G. Knepley         PetscObject  obj;
49023e9753d6SMatthew G. Knepley         PetscClassId id;
49033e9753d6SMatthew G. Knepley         PetscInt     foff, pdim;
49043e9753d6SMatthew G. Knepley 
49059566063dSJacob Faibussowitsch         PetscCall(PetscDSGetDiscretization(ds, f, &obj));
49069566063dSJacob Faibussowitsch         PetscCall(PetscDSGetFieldOffset(ds, f, &foff));
49079566063dSJacob Faibussowitsch         PetscCall(PetscObjectGetClassId(obj, &id));
49083e9753d6SMatthew G. Knepley         if (id != PETSCFV_CLASSID) continue;
49093e9753d6SMatthew G. Knepley         fv = (PetscFV)obj;
49109566063dSJacob Faibussowitsch         PetscCall(PetscFVGetNumComponents(fv, &pdim));
49113e9753d6SMatthew G. Knepley         /* Accumulate fluxes to cells */
49123e9753d6SMatthew G. Knepley         for (face = fS, iface = 0; face < fE; ++face) {
49133e9753d6SMatthew G. Knepley           const PetscInt *scells;
49143e9753d6SMatthew G. Knepley           PetscScalar    *fL = NULL, *fR = NULL;
49153e9753d6SMatthew G. Knepley           PetscInt        ghost, d, nsupp, nchild;
49163e9753d6SMatthew G. Knepley 
49179566063dSJacob Faibussowitsch           PetscCall(DMLabelGetValue(ghostLabel, face, &ghost));
49189566063dSJacob Faibussowitsch           PetscCall(DMPlexGetSupportSize(dm, face, &nsupp));
49199566063dSJacob Faibussowitsch           PetscCall(DMPlexGetTreeChildren(dm, face, &nchild, NULL));
49203e9753d6SMatthew G. Knepley           if (ghost >= 0 || nsupp > 2 || nchild > 0) continue;
49219566063dSJacob Faibussowitsch           PetscCall(DMPlexGetSupport(dm, face, &scells));
49229566063dSJacob Faibussowitsch           PetscCall(DMLabelGetValue(ghostLabel, scells[0], &ghost));
49239566063dSJacob Faibussowitsch           if (ghost <= 0) PetscCall(DMPlexPointLocalFieldRef(dm, scells[0], f, fa, &fL));
49249566063dSJacob Faibussowitsch           PetscCall(DMLabelGetValue(ghostLabel, scells[1], &ghost));
49259566063dSJacob Faibussowitsch           if (ghost <= 0) PetscCall(DMPlexPointLocalFieldRef(dm, scells[1], f, fa, &fR));
49263e9753d6SMatthew G. Knepley           for (d = 0; d < pdim; ++d) {
49273e9753d6SMatthew G. Knepley             if (fL) fL[d] -= fluxL[iface * totDim + foff + d];
49283e9753d6SMatthew G. Knepley             if (fR) fR[d] += fluxR[iface * totDim + foff + d];
49293e9753d6SMatthew G. Knepley           }
49303e9753d6SMatthew G. Knepley           ++iface;
49313e9753d6SMatthew G. Knepley         }
49323e9753d6SMatthew G. Knepley       }
49339566063dSJacob Faibussowitsch       PetscCall(VecRestoreArray(locF, &fa));
49343e9753d6SMatthew G. Knepley     }
49353e9753d6SMatthew G. Knepley     /* Handle time derivative */
49363e9753d6SMatthew G. Knepley     if (locX_t) {
49373e9753d6SMatthew G. Knepley       PetscScalar *x_t, *fa;
49383e9753d6SMatthew G. Knepley 
49399566063dSJacob Faibussowitsch       PetscCall(VecGetArray(locF, &fa));
49409566063dSJacob Faibussowitsch       PetscCall(VecGetArray(locX_t, &x_t));
49413e9753d6SMatthew G. Knepley       for (f = 0; f < Nf; ++f) {
49423e9753d6SMatthew G. Knepley         PetscFV      fv;
49433e9753d6SMatthew G. Knepley         PetscObject  obj;
49443e9753d6SMatthew G. Knepley         PetscClassId id;
49453e9753d6SMatthew G. Knepley         PetscInt     pdim, d;
49463e9753d6SMatthew G. Knepley 
49479566063dSJacob Faibussowitsch         PetscCall(PetscDSGetDiscretization(ds, f, &obj));
49489566063dSJacob Faibussowitsch         PetscCall(PetscObjectGetClassId(obj, &id));
49493e9753d6SMatthew G. Knepley         if (id != PETSCFV_CLASSID) continue;
49503e9753d6SMatthew G. Knepley         fv = (PetscFV)obj;
49519566063dSJacob Faibussowitsch         PetscCall(PetscFVGetNumComponents(fv, &pdim));
49523e9753d6SMatthew G. Knepley         for (c = cS; c < cE; ++c) {
49533e9753d6SMatthew G. Knepley           const PetscInt cell = cells ? cells[c] : c;
49543e9753d6SMatthew G. Knepley           PetscScalar   *u_t, *r;
49553e9753d6SMatthew G. Knepley 
49563e9753d6SMatthew G. Knepley           if (ghostLabel) {
49573e9753d6SMatthew G. Knepley             PetscInt ghostVal;
49583e9753d6SMatthew G. Knepley 
49599566063dSJacob Faibussowitsch             PetscCall(DMLabelGetValue(ghostLabel, cell, &ghostVal));
49603e9753d6SMatthew G. Knepley             if (ghostVal > 0) continue;
49613e9753d6SMatthew G. Knepley           }
49629566063dSJacob Faibussowitsch           PetscCall(DMPlexPointLocalFieldRead(dm, cell, f, x_t, &u_t));
49639566063dSJacob Faibussowitsch           PetscCall(DMPlexPointLocalFieldRef(dm, cell, f, fa, &r));
49643e9753d6SMatthew G. Knepley           for (d = 0; d < pdim; ++d) r[d] += u_t[d];
49653e9753d6SMatthew G. Knepley         }
49663e9753d6SMatthew G. Knepley       }
49679566063dSJacob Faibussowitsch       PetscCall(VecRestoreArray(locX_t, &x_t));
49689566063dSJacob Faibussowitsch       PetscCall(VecRestoreArray(locF, &fa));
49693e9753d6SMatthew G. Knepley     }
49703e9753d6SMatthew G. Knepley     if (useFEM) {
49719566063dSJacob Faibussowitsch       PetscCall(DMPlexRestoreCellFields(dm, chunkIS, locX, locX_t, locA, &u, &u_t, &a));
49729566063dSJacob Faibussowitsch       PetscCall(DMRestoreWorkArray(dm, numCells * totDim, MPIU_SCALAR, &elemVec));
49733e9753d6SMatthew G. Knepley     }
49743e9753d6SMatthew G. Knepley     if (useFVM) {
49759566063dSJacob Faibussowitsch       PetscCall(DMPlexRestoreFaceFields(dm, fS, fE, locX, locX_t, faceGeometryFVM, cellGeometryFVM, locGrad, &numFaces, &uL, &uR));
49769566063dSJacob Faibussowitsch       PetscCall(DMPlexRestoreFaceGeometry(dm, fS, fE, faceGeometryFVM, cellGeometryFVM, &numFaces, &fgeom, &vol));
49779566063dSJacob Faibussowitsch       PetscCall(DMRestoreWorkArray(dm, numFaces * totDim, MPIU_SCALAR, &fluxL));
49789566063dSJacob Faibussowitsch       PetscCall(DMRestoreWorkArray(dm, numFaces * totDim, MPIU_SCALAR, &fluxR));
49799566063dSJacob Faibussowitsch       if (dmGrad) PetscCall(DMRestoreLocalVector(dmGrad, &locGrad));
49803e9753d6SMatthew G. Knepley     }
49813e9753d6SMatthew G. Knepley   }
49829566063dSJacob Faibussowitsch   if (useFEM) PetscCall(ISDestroy(&chunkIS));
49839566063dSJacob Faibussowitsch   PetscCall(ISRestorePointRange(cellIS, &cStart, &cEnd, &cells));
49843e9753d6SMatthew G. Knepley 
49853e9753d6SMatthew G. Knepley   if (useFEM) {
49869566063dSJacob Faibussowitsch     PetscCall(DMPlexComputeBdResidual_Internal(dm, locX, locX_t, t, locF, user));
49873e9753d6SMatthew G. Knepley 
49883e9753d6SMatthew G. Knepley     if (maxDegree <= 1) {
49899566063dSJacob Faibussowitsch       PetscCall(DMSNESRestoreFEGeom(coordField, cellIS, affineQuad, PETSC_FALSE, &affineGeom));
49909566063dSJacob Faibussowitsch       PetscCall(PetscQuadratureDestroy(&affineQuad));
49913e9753d6SMatthew G. Knepley     } else {
49923e9753d6SMatthew G. Knepley       for (f = 0; f < Nf; ++f) {
49939566063dSJacob Faibussowitsch         PetscCall(DMSNESRestoreFEGeom(coordField, cellIS, quads[f], PETSC_FALSE, &geoms[f]));
49949566063dSJacob Faibussowitsch         PetscCall(PetscQuadratureDestroy(&quads[f]));
49953e9753d6SMatthew G. Knepley       }
49969566063dSJacob Faibussowitsch       PetscCall(PetscFree2(quads, geoms));
49973e9753d6SMatthew G. Knepley     }
49983e9753d6SMatthew G. Knepley   }
49993e9753d6SMatthew G. Knepley 
50003e9753d6SMatthew G. Knepley   /* FEM */
50013e9753d6SMatthew G. Knepley   /* 1: Get sizes from dm and dmAux */
50023e9753d6SMatthew G. Knepley   /* 2: Get geometric data */
50033e9753d6SMatthew G. Knepley   /* 3: Handle boundary values */
50043e9753d6SMatthew G. Knepley   /* 4: Loop over domain */
50053e9753d6SMatthew G. Knepley   /*   Extract coefficients */
50063e9753d6SMatthew G. Knepley   /* Loop over fields */
50073e9753d6SMatthew G. Knepley   /*   Set tiling for FE*/
50083e9753d6SMatthew G. Knepley   /*   Integrate FE residual to get elemVec */
50093e9753d6SMatthew G. Knepley   /*     Loop over subdomain */
50103e9753d6SMatthew G. Knepley   /*       Loop over quad points */
50113e9753d6SMatthew G. Knepley   /*         Transform coords to real space */
50123e9753d6SMatthew G. Knepley   /*         Evaluate field and aux fields at point */
50133e9753d6SMatthew G. Knepley   /*         Evaluate residual at point */
50143e9753d6SMatthew G. Knepley   /*         Transform residual to real space */
50153e9753d6SMatthew G. Knepley   /*       Add residual to elemVec */
50163e9753d6SMatthew G. Knepley   /* Loop over domain */
50173e9753d6SMatthew G. Knepley   /*   Add elemVec to locX */
50183e9753d6SMatthew G. Knepley 
50193e9753d6SMatthew G. Knepley   /* FVM */
50203e9753d6SMatthew G. Knepley   /* Get geometric data */
50213e9753d6SMatthew G. Knepley   /* If using gradients */
50223e9753d6SMatthew G. Knepley   /*   Compute gradient data */
50233e9753d6SMatthew G. Knepley   /*   Loop over domain faces */
50243e9753d6SMatthew G. Knepley   /*     Count computational faces */
50253e9753d6SMatthew G. Knepley   /*     Reconstruct cell gradient */
50263e9753d6SMatthew G. Knepley   /*   Loop over domain cells */
50273e9753d6SMatthew G. Knepley   /*     Limit cell gradients */
50283e9753d6SMatthew G. Knepley   /* Handle boundary values */
50293e9753d6SMatthew G. Knepley   /* Loop over domain faces */
50303e9753d6SMatthew G. Knepley   /*   Read out field, centroid, normal, volume for each side of face */
50313e9753d6SMatthew G. Knepley   /* Riemann solve over faces */
50323e9753d6SMatthew G. Knepley   /* Loop over domain faces */
50333e9753d6SMatthew G. Knepley   /*   Accumulate fluxes to cells */
50343e9753d6SMatthew G. Knepley   /* TODO Change printFEM to printDisc here */
50353e9753d6SMatthew G. Knepley   if (mesh->printFEM) {
50363e9753d6SMatthew G. Knepley     Vec          locFbc;
50373e9753d6SMatthew G. Knepley     PetscInt     pStart, pEnd, p, maxDof;
50383e9753d6SMatthew G. Knepley     PetscScalar *zeroes;
50393e9753d6SMatthew G. Knepley 
50409566063dSJacob Faibussowitsch     PetscCall(VecDuplicate(locF, &locFbc));
50419566063dSJacob Faibussowitsch     PetscCall(VecCopy(locF, locFbc));
50429566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetChart(section, &pStart, &pEnd));
50439566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetMaxDof(section, &maxDof));
50449566063dSJacob Faibussowitsch     PetscCall(PetscCalloc1(maxDof, &zeroes));
504548a46eb9SPierre Jolivet     for (p = pStart; p < pEnd; p++) PetscCall(VecSetValuesSection(locFbc, section, p, zeroes, INSERT_BC_VALUES));
50469566063dSJacob Faibussowitsch     PetscCall(PetscFree(zeroes));
50479566063dSJacob Faibussowitsch     PetscCall(DMPrintLocalVec(dm, name, mesh->printTol, locFbc));
50489566063dSJacob Faibussowitsch     PetscCall(VecDestroy(&locFbc));
50493e9753d6SMatthew G. Knepley   }
50509566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(DMPLEX_ResidualFEM, dm, 0, 0, 0));
50513ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
50523e9753d6SMatthew G. Knepley }
50533e9753d6SMatthew G. Knepley 
50546528b96dSMatthew G. Knepley /*
50556528b96dSMatthew G. Knepley   1) Allow multiple kernels for BdResidual for hybrid DS
50566528b96dSMatthew G. Knepley 
50576528b96dSMatthew G. Knepley   DONE 2) Get out dsAux for either side at the same time as cohesive cell dsAux
50586528b96dSMatthew G. Knepley 
50596528b96dSMatthew G. Knepley   DONE 3) Change DMGetCellFields() to get different aux data a[] for each side
50606528b96dSMatthew G. Knepley      - I think I just need to replace a[] with the closure from each face
50616528b96dSMatthew G. Knepley 
50626528b96dSMatthew G. Knepley   4) Run both kernels for each non-hybrid field with correct dsAux, and then hybrid field as before
50636528b96dSMatthew G. Knepley */
5064d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeResidual_Hybrid_Internal(DM dm, PetscFormKey key[], IS cellIS, PetscReal time, Vec locX, Vec locX_t, PetscReal t, Vec locF, void *user)
5065d71ae5a4SJacob Faibussowitsch {
50663e9753d6SMatthew G. Knepley   DM_Plex        *mesh       = (DM_Plex *)dm->data;
50673e9753d6SMatthew G. Knepley   const char     *name       = "Hybrid Residual";
506804c51a94SMatthew G. Knepley   DM              dmAux[3]   = {NULL, NULL, NULL};
50693e9753d6SMatthew G. Knepley   DMLabel         ghostLabel = NULL;
50706528b96dSMatthew G. Knepley   PetscDS         ds         = NULL;
507107218a29SMatthew G. Knepley   PetscDS         dsIn       = NULL;
50726528b96dSMatthew G. Knepley   PetscDS         dsAux[3]   = {NULL, NULL, NULL};
507304c51a94SMatthew G. Knepley   Vec             locA[3]    = {NULL, NULL, NULL};
507407218a29SMatthew G. Knepley   DM              dmScale[3] = {NULL, NULL, NULL};
507507218a29SMatthew G. Knepley   PetscDS         dsScale[3] = {NULL, NULL, NULL};
507607218a29SMatthew G. Knepley   Vec             locS[3]    = {NULL, NULL, NULL};
50773e9753d6SMatthew G. Knepley   PetscSection    section    = NULL;
50783e9753d6SMatthew G. Knepley   DMField         coordField = NULL;
507907218a29SMatthew G. Knepley   PetscScalar    *a[3]       = {NULL, NULL, NULL};
508007218a29SMatthew G. Knepley   PetscScalar    *s[3]       = {NULL, NULL, NULL};
5081b2ab40e6SMatthew G. Knepley   PetscScalar    *u          = NULL, *u_t;
508207218a29SMatthew G. Knepley   PetscScalar    *elemVecNeg, *elemVecPos, *elemVecCoh;
50833e9753d6SMatthew G. Knepley   IS              chunkIS;
50843e9753d6SMatthew G. Knepley   const PetscInt *cells;
50853e9753d6SMatthew G. Knepley   PetscInt       *faces;
50863e9753d6SMatthew G. Knepley   PetscInt        cStart, cEnd, numCells;
50873e2b0218SMatthew G. Knepley   PetscInt        Nf, f, totDim, totDimIn, totDimAux[3], totDimScale[3], numChunks, cellChunkSize, chunk;
50883e9753d6SMatthew G. Knepley   PetscInt        maxDegree  = PETSC_MAX_INT;
50893e9753d6SMatthew G. Knepley   PetscQuadrature affineQuad = NULL, *quads = NULL;
50903e9753d6SMatthew G. Knepley   PetscFEGeom    *affineGeom = NULL, **geoms = NULL;
50913e9753d6SMatthew G. Knepley 
50923e9753d6SMatthew G. Knepley   PetscFunctionBegin;
50933ba16761SJacob Faibussowitsch   if (!cellIS) PetscFunctionReturn(PETSC_SUCCESS);
5094437e83fbSMatthew G. Knepley   PetscCall(ISGetPointRange(cellIS, &cStart, &cEnd, &cells));
5095437e83fbSMatthew G. Knepley   PetscCall(ISGetLocalSize(cellIS, &numCells));
50963ba16761SJacob Faibussowitsch   if (cStart >= cEnd) PetscFunctionReturn(PETSC_SUCCESS);
50975fedec97SMatthew G. Knepley   if ((key[0].label == key[1].label) && (key[0].value == key[1].value) && (key[0].part == key[1].part)) {
50985fedec97SMatthew G. Knepley     const char *name;
50999566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetName((PetscObject)key[0].label, &name));
510063a3b9bcSJacob Faibussowitsch     SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Form keys for each side of a cohesive surface must be different (%s, %" PetscInt_FMT ", %" PetscInt_FMT ")", name, key[0].value, key[0].part);
51015fedec97SMatthew G. Knepley   }
51029566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(DMPLEX_ResidualFEM, dm, 0, 0, 0));
51033e9753d6SMatthew G. Knepley   /* TODO The places where we have to use isFE are probably the member functions for the PetscDisc class */
51043e9753d6SMatthew G. Knepley   /* FEM */
51053e9753d6SMatthew G. Knepley   /* 1: Get sizes from dm and dmAux */
51069566063dSJacob Faibussowitsch   PetscCall(DMGetSection(dm, &section));
51079566063dSJacob Faibussowitsch   PetscCall(DMGetLabel(dm, "ghost", &ghostLabel));
510807218a29SMatthew G. Knepley   PetscCall(DMGetCellDS(dm, cells ? cells[cStart] : cStart, &ds, &dsIn));
51099566063dSJacob Faibussowitsch   PetscCall(PetscDSGetNumFields(ds, &Nf));
51109566063dSJacob Faibussowitsch   PetscCall(PetscDSGetTotalDimension(ds, &totDim));
511107218a29SMatthew G. Knepley   PetscCall(PetscDSGetTotalDimension(dsIn, &totDimIn));
51129566063dSJacob Faibussowitsch   PetscCall(DMGetAuxiliaryVec(dm, key[2].label, key[2].value, key[2].part, &locA[2]));
511304c51a94SMatthew G. Knepley   if (locA[2]) {
51141059d808SMatthew G. Knepley     const PetscInt cellStart = cells ? cells[cStart] : cStart;
51151059d808SMatthew G. Knepley 
51169566063dSJacob Faibussowitsch     PetscCall(VecGetDM(locA[2], &dmAux[2]));
511707218a29SMatthew G. Knepley     PetscCall(DMGetCellDS(dmAux[2], cellStart, &dsAux[2], NULL));
51189566063dSJacob Faibussowitsch     PetscCall(PetscDSGetTotalDimension(dsAux[2], &totDimAux[2]));
51196528b96dSMatthew G. Knepley     {
51206528b96dSMatthew G. Knepley       const PetscInt *cone;
51216528b96dSMatthew G. Knepley       PetscInt        c;
51226528b96dSMatthew G. Knepley 
51231059d808SMatthew G. Knepley       PetscCall(DMPlexGetCone(dm, cellStart, &cone));
51246528b96dSMatthew G. Knepley       for (c = 0; c < 2; ++c) {
51256528b96dSMatthew G. Knepley         const PetscInt *support;
51266528b96dSMatthew G. Knepley         PetscInt        ssize, s;
51276528b96dSMatthew G. Knepley 
51289566063dSJacob Faibussowitsch         PetscCall(DMPlexGetSupport(dm, cone[c], &support));
51299566063dSJacob Faibussowitsch         PetscCall(DMPlexGetSupportSize(dm, cone[c], &ssize));
51301059d808SMatthew G. Knepley         PetscCheck(ssize == 2, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Face %" PetscInt_FMT " from cell %" PetscInt_FMT " has support size %" PetscInt_FMT " != 2", cone[c], cellStart, ssize);
51311059d808SMatthew G. Knepley         if (support[0] == cellStart) s = 1;
51321059d808SMatthew G. Knepley         else if (support[1] == cellStart) s = 0;
51331059d808SMatthew G. Knepley         else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Face %" PetscInt_FMT " does not have cell %" PetscInt_FMT " in its support", cone[c], cellStart);
51349566063dSJacob Faibussowitsch         PetscCall(DMGetAuxiliaryVec(dm, key[c].label, key[c].value, key[c].part, &locA[c]));
5135c75bfeddSPierre Jolivet         PetscCheck(locA[c], PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Must have auxiliary vector for (%p, %" PetscInt_FMT ", %" PetscInt_FMT ")", (void *)key[c].label, key[c].value, key[c].part);
51369566063dSJacob Faibussowitsch         if (locA[c]) PetscCall(VecGetDM(locA[c], &dmAux[c]));
5137ad540459SPierre Jolivet         else dmAux[c] = dmAux[2];
513807218a29SMatthew G. Knepley         PetscCall(DMGetCellDS(dmAux[c], support[s], &dsAux[c], NULL));
51399566063dSJacob Faibussowitsch         PetscCall(PetscDSGetTotalDimension(dsAux[c], &totDimAux[c]));
51406528b96dSMatthew G. Knepley       }
51416528b96dSMatthew G. Knepley     }
51423e9753d6SMatthew G. Knepley   }
514307218a29SMatthew G. Knepley   /* Handle mass matrix scaling
514407218a29SMatthew G. Knepley        The field in key[2] is the field to be scaled, and the scaling field is the first in the dsScale */
514507218a29SMatthew G. Knepley   PetscCall(DMGetAuxiliaryVec(dm, key[2].label, -key[2].value, key[2].part, &locS[2]));
514607218a29SMatthew G. Knepley   if (locS[2]) {
51473e2b0218SMatthew G. Knepley     const PetscInt cellStart = cells ? cells[cStart] : cStart;
514807218a29SMatthew G. Knepley     PetscInt       Nb, Nbs;
514907218a29SMatthew G. Knepley 
515007218a29SMatthew G. Knepley     PetscCall(VecGetDM(locS[2], &dmScale[2]));
51513e2b0218SMatthew G. Knepley     PetscCall(DMGetCellDS(dmScale[2], cellStart, &dsScale[2], NULL));
51523e2b0218SMatthew G. Knepley     PetscCall(PetscDSGetTotalDimension(dsScale[2], &totDimScale[2]));
515307218a29SMatthew G. Knepley     // BRAD: This is not set correctly
515407218a29SMatthew G. Knepley     key[2].field = 2;
515507218a29SMatthew G. Knepley     PetscCall(PetscDSGetFieldSize(ds, key[2].field, &Nb));
515607218a29SMatthew G. Knepley     PetscCall(PetscDSGetFieldSize(dsScale[2], 0, &Nbs));
515707218a29SMatthew G. Knepley     PetscCheck(Nb == Nbs, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "Field %" PetscInt_FMT " of size %" PetscInt_FMT " cannot be scaled by field of size %" PetscInt_FMT, key[2].field, Nb, Nbs);
51583e2b0218SMatthew G. Knepley     {
51593e2b0218SMatthew G. Knepley       const PetscInt *cone;
51603e2b0218SMatthew G. Knepley       PetscInt        c;
51613e2b0218SMatthew G. Knepley 
51623e2b0218SMatthew G. Knepley       locS[1] = locS[0] = locS[2];
51633e2b0218SMatthew G. Knepley       dmScale[1] = dmScale[0] = dmScale[2];
51643e2b0218SMatthew G. Knepley       PetscCall(DMPlexGetCone(dm, cellStart, &cone));
51653e2b0218SMatthew G. Knepley       for (c = 0; c < 2; ++c) {
51663e2b0218SMatthew G. Knepley         const PetscInt *support;
51673e2b0218SMatthew G. Knepley         PetscInt        ssize, s;
51683e2b0218SMatthew G. Knepley 
51693e2b0218SMatthew G. Knepley         PetscCall(DMPlexGetSupport(dm, cone[c], &support));
51703e2b0218SMatthew G. Knepley         PetscCall(DMPlexGetSupportSize(dm, cone[c], &ssize));
51713e2b0218SMatthew G. Knepley         PetscCheck(ssize == 2, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Face %" PetscInt_FMT " from cell %" PetscInt_FMT " has support size %" PetscInt_FMT " != 2", cone[c], cellStart, ssize);
51723e2b0218SMatthew G. Knepley         if (support[0] == cellStart) s = 1;
51733e2b0218SMatthew G. Knepley         else if (support[1] == cellStart) s = 0;
51743e2b0218SMatthew G. Knepley         else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Face %" PetscInt_FMT " does not have cell %" PetscInt_FMT " in its support", cone[c], cellStart);
51753e2b0218SMatthew G. Knepley         PetscCall(DMGetCellDS(dmScale[c], support[s], &dsScale[c], NULL));
51763e2b0218SMatthew G. Knepley         PetscCall(PetscDSGetTotalDimension(dsScale[c], &totDimScale[c]));
51773e2b0218SMatthew G. Knepley       }
51783e2b0218SMatthew G. Knepley     }
517907218a29SMatthew G. Knepley   }
51803e9753d6SMatthew G. Knepley   /* 2: Setup geometric data */
51819566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateField(dm, &coordField));
51829566063dSJacob Faibussowitsch   PetscCall(DMFieldGetDegree(coordField, cellIS, NULL, &maxDegree));
51833e9753d6SMatthew G. Knepley   if (maxDegree > 1) {
51849566063dSJacob Faibussowitsch     PetscCall(PetscCalloc2(Nf, &quads, Nf, &geoms));
51853e9753d6SMatthew G. Knepley     for (f = 0; f < Nf; ++f) {
51863e9753d6SMatthew G. Knepley       PetscFE fe;
51873e9753d6SMatthew G. Knepley 
51889566063dSJacob Faibussowitsch       PetscCall(PetscDSGetDiscretization(ds, f, (PetscObject *)&fe));
51893e9753d6SMatthew G. Knepley       if (fe) {
51909566063dSJacob Faibussowitsch         PetscCall(PetscFEGetQuadrature(fe, &quads[f]));
51919566063dSJacob Faibussowitsch         PetscCall(PetscObjectReference((PetscObject)quads[f]));
51923e9753d6SMatthew G. Knepley       }
51933e9753d6SMatthew G. Knepley     }
51943e9753d6SMatthew G. Knepley   }
51953e9753d6SMatthew G. Knepley   /* Loop over chunks */
51963e9753d6SMatthew G. Knepley   cellChunkSize = numCells;
51973e9753d6SMatthew G. Knepley   numChunks     = !numCells ? 0 : PetscCeilReal(((PetscReal)numCells) / cellChunkSize);
519807218a29SMatthew G. Knepley   PetscCall(PetscCalloc1(2 * cellChunkSize, &faces));
519907218a29SMatthew G. Knepley   PetscCall(ISCreateGeneral(PETSC_COMM_SELF, 2 * cellChunkSize, faces, PETSC_USE_POINTER, &chunkIS));
52003e9753d6SMatthew G. Knepley   /* Extract field coefficients */
52013e9753d6SMatthew G. Knepley   /* NOTE This needs the end cap faces to have identical orientations */
520207218a29SMatthew G. Knepley   PetscCall(DMPlexGetHybridCellFields(dm, cellIS, locX, locX_t, locA[2], &u, &u_t, &a[2]));
520307218a29SMatthew G. Knepley   PetscCall(DMPlexGetHybridFields(dm, dmAux, dsAux, cellIS, locA, PETSC_TRUE, a));
52043e2b0218SMatthew G. Knepley   PetscCall(DMPlexGetHybridFields(dm, dmScale, dsScale, cellIS, locS, PETSC_TRUE, s));
520507218a29SMatthew G. Knepley   PetscCall(DMGetWorkArray(dm, cellChunkSize * totDim, MPIU_SCALAR, &elemVecNeg));
520607218a29SMatthew G. Knepley   PetscCall(DMGetWorkArray(dm, cellChunkSize * totDim, MPIU_SCALAR, &elemVecPos));
520707218a29SMatthew G. Knepley   PetscCall(DMGetWorkArray(dm, cellChunkSize * totDim, MPIU_SCALAR, &elemVecCoh));
52083e9753d6SMatthew G. Knepley   for (chunk = 0; chunk < numChunks; ++chunk) {
52093e9753d6SMatthew G. Knepley     PetscInt cS = cStart + chunk * cellChunkSize, cE = PetscMin(cS + cellChunkSize, cEnd), numCells = cE - cS, c;
52103e9753d6SMatthew G. Knepley 
521107218a29SMatthew G. Knepley     PetscCall(PetscArrayzero(elemVecNeg, cellChunkSize * totDim));
521207218a29SMatthew G. Knepley     PetscCall(PetscArrayzero(elemVecPos, cellChunkSize * totDim));
521307218a29SMatthew G. Knepley     PetscCall(PetscArrayzero(elemVecCoh, cellChunkSize * totDim));
52143e9753d6SMatthew G. Knepley     /* Get faces */
52153e9753d6SMatthew G. Knepley     for (c = cS; c < cE; ++c) {
52163e9753d6SMatthew G. Knepley       const PetscInt  cell = cells ? cells[c] : c;
52173e9753d6SMatthew G. Knepley       const PetscInt *cone;
52189566063dSJacob Faibussowitsch       PetscCall(DMPlexGetCone(dm, cell, &cone));
521907218a29SMatthew G. Knepley       faces[(c - cS) * 2 + 0] = cone[0];
522007218a29SMatthew G. Knepley       faces[(c - cS) * 2 + 1] = cone[1];
52213e9753d6SMatthew G. Knepley     }
522207218a29SMatthew G. Knepley     PetscCall(ISGeneralSetIndices(chunkIS, 2 * cellChunkSize, faces, PETSC_USE_POINTER));
52233e9753d6SMatthew G. Knepley     /* Get geometric data */
52243e9753d6SMatthew G. Knepley     if (maxDegree <= 1) {
52259566063dSJacob Faibussowitsch       if (!affineQuad) PetscCall(DMFieldCreateDefaultQuadrature(coordField, chunkIS, &affineQuad));
52269566063dSJacob Faibussowitsch       if (affineQuad) PetscCall(DMSNESGetFEGeom(coordField, chunkIS, affineQuad, PETSC_TRUE, &affineGeom));
52273e9753d6SMatthew G. Knepley     } else {
52283e9753d6SMatthew G. Knepley       for (f = 0; f < Nf; ++f) {
52299566063dSJacob Faibussowitsch         if (quads[f]) PetscCall(DMSNESGetFEGeom(coordField, chunkIS, quads[f], PETSC_TRUE, &geoms[f]));
52303e9753d6SMatthew G. Knepley       }
52313e9753d6SMatthew G. Knepley     }
52323e9753d6SMatthew G. Knepley     /* Loop over fields */
52333e9753d6SMatthew G. Knepley     for (f = 0; f < Nf; ++f) {
52343e9753d6SMatthew G. Knepley       PetscFE         fe;
52353e9753d6SMatthew G. Knepley       PetscFEGeom    *geom      = affineGeom ? affineGeom : geoms[f];
5236148442b3SMatthew G. Knepley       PetscFEGeom    *chunkGeom = NULL, *remGeom = NULL;
52373e9753d6SMatthew G. Knepley       PetscQuadrature quad = affineQuad ? affineQuad : quads[f];
52383e9753d6SMatthew G. Knepley       PetscInt        numChunks, numBatches, batchSize, numBlocks, blockSize, Ne, Nr, offset, Nq, Nb;
52395fedec97SMatthew G. Knepley       PetscBool       isCohesiveField;
52403e9753d6SMatthew G. Knepley 
52419566063dSJacob Faibussowitsch       PetscCall(PetscDSGetDiscretization(ds, f, (PetscObject *)&fe));
52423e9753d6SMatthew G. Knepley       if (!fe) continue;
52439566063dSJacob Faibussowitsch       PetscCall(PetscFEGetTileSizes(fe, NULL, &numBlocks, NULL, &numBatches));
52449566063dSJacob Faibussowitsch       PetscCall(PetscQuadratureGetData(quad, NULL, NULL, &Nq, NULL, NULL));
52459566063dSJacob Faibussowitsch       PetscCall(PetscFEGetDimension(fe, &Nb));
52463e9753d6SMatthew G. Knepley       blockSize = Nb;
52473e9753d6SMatthew G. Knepley       batchSize = numBlocks * blockSize;
52489566063dSJacob Faibussowitsch       PetscCall(PetscFESetTileSizes(fe, blockSize, numBlocks, batchSize, numBatches));
52493e9753d6SMatthew G. Knepley       numChunks = numCells / (numBatches * batchSize);
52503e9753d6SMatthew G. Knepley       Ne        = numChunks * numBatches * batchSize;
52513e9753d6SMatthew G. Knepley       Nr        = numCells % (numBatches * batchSize);
52523e9753d6SMatthew G. Knepley       offset    = numCells - Nr;
525307218a29SMatthew G. Knepley       PetscCall(PetscFEGeomGetChunk(geom, 0, offset * 2, &chunkGeom));
525407218a29SMatthew G. Knepley       PetscCall(PetscFEGeomGetChunk(geom, offset * 2, numCells * 2, &remGeom));
52559566063dSJacob Faibussowitsch       PetscCall(PetscDSGetCohesive(ds, f, &isCohesiveField));
52565fedec97SMatthew G. Knepley       chunkGeom->isCohesive = remGeom->isCohesive = PETSC_TRUE;
52576528b96dSMatthew G. Knepley       key[0].field                                = f;
52586528b96dSMatthew G. Knepley       key[1].field                                = f;
52595fedec97SMatthew G. Knepley       key[2].field                                = f;
526007218a29SMatthew G. Knepley       PetscCall(PetscFEIntegrateHybridResidual(ds, dsIn, key[0], 0, Ne, chunkGeom, u, u_t, dsAux[0], a[0], t, elemVecNeg));
526107218a29SMatthew G. Knepley       PetscCall(PetscFEIntegrateHybridResidual(ds, dsIn, key[0], 0, Nr, remGeom, &u[offset * totDimIn], u_t ? &u_t[offset * totDimIn] : NULL, dsAux[0], &a[0][offset * totDimAux[0]], t, &elemVecNeg[offset * totDim]));
526207218a29SMatthew G. Knepley       PetscCall(PetscFEIntegrateHybridResidual(ds, dsIn, key[1], 1, Ne, chunkGeom, u, u_t, dsAux[1], a[1], t, elemVecPos));
526307218a29SMatthew G. Knepley       PetscCall(PetscFEIntegrateHybridResidual(ds, dsIn, key[1], 1, Nr, remGeom, &u[offset * totDimIn], u_t ? &u_t[offset * totDimIn] : NULL, dsAux[1], &a[1][offset * totDimAux[1]], t, &elemVecPos[offset * totDim]));
526407218a29SMatthew G. Knepley       PetscCall(PetscFEIntegrateHybridResidual(ds, dsIn, key[2], 2, Ne, chunkGeom, u, u_t, dsAux[2], a[2], t, elemVecCoh));
526507218a29SMatthew G. Knepley       PetscCall(PetscFEIntegrateHybridResidual(ds, dsIn, key[2], 2, Nr, remGeom, &u[offset * totDimIn], u_t ? &u_t[offset * totDimIn] : NULL, dsAux[2], &a[2][offset * totDimAux[2]], t, &elemVecCoh[offset * totDim]));
52669566063dSJacob Faibussowitsch       PetscCall(PetscFEGeomRestoreChunk(geom, offset, numCells, &remGeom));
52679566063dSJacob Faibussowitsch       PetscCall(PetscFEGeomRestoreChunk(geom, 0, offset, &chunkGeom));
52683e9753d6SMatthew G. Knepley     }
52693e9753d6SMatthew G. Knepley     /* Add elemVec to locX */
52703e9753d6SMatthew G. Knepley     for (c = cS; c < cE; ++c) {
52713e9753d6SMatthew G. Knepley       const PetscInt cell = cells ? cells[c] : c;
52723e9753d6SMatthew G. Knepley       const PetscInt cind = c - cStart;
527307218a29SMatthew G. Knepley       PetscInt       i;
52743e9753d6SMatthew G. Knepley 
527507218a29SMatthew G. Knepley       /* Scale element values */
527607218a29SMatthew G. Knepley       if (locS[0]) {
52773e2b0218SMatthew G. Knepley         PetscInt  Nb, off = cind * totDim, soff = cind * totDimScale[0];
527807218a29SMatthew G. Knepley         PetscBool cohesive;
527907218a29SMatthew G. Knepley 
528007218a29SMatthew G. Knepley         for (f = 0; f < Nf; ++f) {
528107218a29SMatthew G. Knepley           PetscCall(PetscDSGetFieldSize(ds, f, &Nb));
528207218a29SMatthew G. Knepley           PetscCall(PetscDSGetCohesive(ds, f, &cohesive));
528307218a29SMatthew G. Knepley           if (f == key[2].field) {
528407218a29SMatthew G. Knepley             PetscCheck(cohesive, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Scaling should not happen for face fields");
528507218a29SMatthew G. Knepley             // No cohesive scaling field is currently input
528607218a29SMatthew G. Knepley             for (i = 0; i < Nb; ++i) elemVecCoh[off + i] += s[0][soff + i] * elemVecNeg[off + i] + s[1][soff + i] * elemVecPos[off + i];
528707218a29SMatthew G. Knepley             off += Nb;
528807218a29SMatthew G. Knepley           } else {
528907218a29SMatthew G. Knepley             const PetscInt N = cohesive ? Nb : Nb * 2;
529007218a29SMatthew G. Knepley 
529107218a29SMatthew G. Knepley             for (i = 0; i < N; ++i) elemVecCoh[off + i] += elemVecNeg[off + i] + elemVecPos[off + i];
529207218a29SMatthew G. Knepley             off += N;
529307218a29SMatthew G. Knepley           }
529407218a29SMatthew G. Knepley         }
529507218a29SMatthew G. Knepley       } else {
529607218a29SMatthew G. Knepley         for (i = cind * totDim; i < (cind + 1) * totDim; ++i) elemVecCoh[i] += elemVecNeg[i] + elemVecPos[i];
529707218a29SMatthew G. Knepley       }
529807218a29SMatthew G. Knepley       if (mesh->printFEM > 1) PetscCall(DMPrintCellVector(cell, name, totDim, &elemVecCoh[cind * totDim]));
52993e9753d6SMatthew G. Knepley       if (ghostLabel) {
53003e9753d6SMatthew G. Knepley         PetscInt ghostVal;
53013e9753d6SMatthew G. Knepley 
53029566063dSJacob Faibussowitsch         PetscCall(DMLabelGetValue(ghostLabel, cell, &ghostVal));
53033e9753d6SMatthew G. Knepley         if (ghostVal > 0) continue;
53043e9753d6SMatthew G. Knepley       }
530507218a29SMatthew G. Knepley       PetscCall(DMPlexVecSetClosure(dm, section, locF, cell, &elemVecCoh[cind * totDim], ADD_ALL_VALUES));
53063e9753d6SMatthew G. Knepley     }
53073e9753d6SMatthew G. Knepley   }
53089566063dSJacob Faibussowitsch   PetscCall(DMPlexRestoreCellFields(dm, cellIS, locX, locX_t, locA[2], &u, &u_t, &a[2]));
530907218a29SMatthew G. Knepley   PetscCall(DMPlexRestoreHybridFields(dm, dmAux, dsAux, cellIS, locA, PETSC_TRUE, a));
53103e2b0218SMatthew G. Knepley   PetscCall(DMPlexRestoreHybridFields(dm, dmScale, dsScale, cellIS, locS, PETSC_TRUE, s));
531107218a29SMatthew G. Knepley   PetscCall(DMRestoreWorkArray(dm, numCells * totDim, MPIU_SCALAR, &elemVecNeg));
531207218a29SMatthew G. Knepley   PetscCall(DMRestoreWorkArray(dm, numCells * totDim, MPIU_SCALAR, &elemVecPos));
531307218a29SMatthew G. Knepley   PetscCall(DMRestoreWorkArray(dm, numCells * totDim, MPIU_SCALAR, &elemVecCoh));
53149566063dSJacob Faibussowitsch   PetscCall(PetscFree(faces));
53159566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&chunkIS));
53169566063dSJacob Faibussowitsch   PetscCall(ISRestorePointRange(cellIS, &cStart, &cEnd, &cells));
53173e9753d6SMatthew G. Knepley   if (maxDegree <= 1) {
53189566063dSJacob Faibussowitsch     PetscCall(DMSNESRestoreFEGeom(coordField, cellIS, affineQuad, PETSC_FALSE, &affineGeom));
53199566063dSJacob Faibussowitsch     PetscCall(PetscQuadratureDestroy(&affineQuad));
53203e9753d6SMatthew G. Knepley   } else {
53213e9753d6SMatthew G. Knepley     for (f = 0; f < Nf; ++f) {
53229566063dSJacob Faibussowitsch       if (geoms) PetscCall(DMSNESRestoreFEGeom(coordField, cellIS, quads[f], PETSC_FALSE, &geoms[f]));
53239566063dSJacob Faibussowitsch       if (quads) PetscCall(PetscQuadratureDestroy(&quads[f]));
53243e9753d6SMatthew G. Knepley     }
53259566063dSJacob Faibussowitsch     PetscCall(PetscFree2(quads, geoms));
53263e9753d6SMatthew G. Knepley   }
532785cc2951SMatthew G. Knepley   if (mesh->printFEM) {
532885cc2951SMatthew G. Knepley     Vec          locFbc;
532985cc2951SMatthew G. Knepley     PetscInt     pStart, pEnd, p, maxDof;
533085cc2951SMatthew G. Knepley     PetscScalar *zeroes;
533185cc2951SMatthew G. Knepley 
533285cc2951SMatthew G. Knepley     PetscCall(VecDuplicate(locF, &locFbc));
533385cc2951SMatthew G. Knepley     PetscCall(VecCopy(locF, locFbc));
533485cc2951SMatthew G. Knepley     PetscCall(PetscSectionGetChart(section, &pStart, &pEnd));
533585cc2951SMatthew G. Knepley     PetscCall(PetscSectionGetMaxDof(section, &maxDof));
533685cc2951SMatthew G. Knepley     PetscCall(PetscCalloc1(maxDof, &zeroes));
533785cc2951SMatthew G. Knepley     for (p = pStart; p < pEnd; p++) PetscCall(VecSetValuesSection(locFbc, section, p, zeroes, INSERT_BC_VALUES));
533885cc2951SMatthew G. Knepley     PetscCall(PetscFree(zeroes));
533985cc2951SMatthew G. Knepley     PetscCall(DMPrintLocalVec(dm, name, mesh->printTol, locFbc));
534085cc2951SMatthew G. Knepley     PetscCall(VecDestroy(&locFbc));
534185cc2951SMatthew G. Knepley   }
53429566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(DMPLEX_ResidualFEM, dm, 0, 0, 0));
53433ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
53443e9753d6SMatthew G. Knepley }
53453e9753d6SMatthew G. Knepley 
5346*a4e35b19SJacob Faibussowitsch static PetscErrorCode DMPlexComputeBdJacobian_Single_Internal(DM dm, PetscReal t, PetscWeakForm wf, DMLabel label, PetscInt numValues, const PetscInt values[], PetscInt fieldI, Vec locX, Vec locX_t, PetscReal X_tShift, Mat Jac, Mat JacP, DMField coordField, IS facetIS)
5347d71ae5a4SJacob Faibussowitsch {
53483e9753d6SMatthew G. Knepley   DM_Plex        *mesh = (DM_Plex *)dm->data;
53493e9753d6SMatthew G. Knepley   DM              plex = NULL, plexA = NULL, tdm;
53503e9753d6SMatthew G. Knepley   DMEnclosureType encAux;
53513e9753d6SMatthew G. Knepley   PetscDS         prob, probAux       = NULL;
53523e9753d6SMatthew G. Knepley   PetscSection    section, sectionAux = NULL;
5353e432b41dSStefano Zampini   PetscSection    globalSection;
53543e9753d6SMatthew G. Knepley   Vec             locA = NULL, tv;
53553e9753d6SMatthew G. Knepley   PetscScalar    *u = NULL, *u_t = NULL, *a = NULL, *elemMat = NULL;
53563e9753d6SMatthew G. Knepley   PetscInt        v;
53573e9753d6SMatthew G. Knepley   PetscInt        Nf, totDim, totDimAux = 0;
5358e432b41dSStefano Zampini   PetscBool       transform;
53593e9753d6SMatthew G. Knepley 
53603e9753d6SMatthew G. Knepley   PetscFunctionBegin;
53619566063dSJacob Faibussowitsch   PetscCall(DMConvert(dm, DMPLEX, &plex));
53629566063dSJacob Faibussowitsch   PetscCall(DMHasBasisTransform(dm, &transform));
53639566063dSJacob Faibussowitsch   PetscCall(DMGetBasisTransformDM_Internal(dm, &tdm));
53649566063dSJacob Faibussowitsch   PetscCall(DMGetBasisTransformVec_Internal(dm, &tv));
53659566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dm, &section));
53669566063dSJacob Faibussowitsch   PetscCall(DMGetDS(dm, &prob));
53679566063dSJacob Faibussowitsch   PetscCall(PetscDSGetNumFields(prob, &Nf));
53689566063dSJacob Faibussowitsch   PetscCall(PetscDSGetTotalDimension(prob, &totDim));
53699566063dSJacob Faibussowitsch   PetscCall(DMGetAuxiliaryVec(dm, label, values[0], 0, &locA));
53703e9753d6SMatthew G. Knepley   if (locA) {
53713e9753d6SMatthew G. Knepley     DM dmAux;
53723e9753d6SMatthew G. Knepley 
53739566063dSJacob Faibussowitsch     PetscCall(VecGetDM(locA, &dmAux));
53749566063dSJacob Faibussowitsch     PetscCall(DMGetEnclosureRelation(dmAux, dm, &encAux));
53759566063dSJacob Faibussowitsch     PetscCall(DMConvert(dmAux, DMPLEX, &plexA));
53769566063dSJacob Faibussowitsch     PetscCall(DMGetDS(plexA, &probAux));
53779566063dSJacob Faibussowitsch     PetscCall(PetscDSGetTotalDimension(probAux, &totDimAux));
53789566063dSJacob Faibussowitsch     PetscCall(DMGetLocalSection(plexA, &sectionAux));
53793e9753d6SMatthew G. Knepley   }
53803e9753d6SMatthew G. Knepley 
53819566063dSJacob Faibussowitsch   PetscCall(DMGetGlobalSection(dm, &globalSection));
53823e9753d6SMatthew G. Knepley   for (v = 0; v < numValues; ++v) {
53833e9753d6SMatthew G. Knepley     PetscFEGeom    *fgeom;
53843e9753d6SMatthew G. Knepley     PetscInt        maxDegree;
53853e9753d6SMatthew G. Knepley     PetscQuadrature qGeom = NULL;
53863e9753d6SMatthew G. Knepley     IS              pointIS;
53873e9753d6SMatthew G. Knepley     const PetscInt *points;
538806ad1575SMatthew G. Knepley     PetscFormKey    key;
53893e9753d6SMatthew G. Knepley     PetscInt        numFaces, face, Nq;
53903e9753d6SMatthew G. Knepley 
539145480ffeSMatthew G. Knepley     key.label = label;
539245480ffeSMatthew G. Knepley     key.value = values[v];
539306ad1575SMatthew G. Knepley     key.part  = 0;
53949566063dSJacob Faibussowitsch     PetscCall(DMLabelGetStratumIS(label, values[v], &pointIS));
53953e9753d6SMatthew G. Knepley     if (!pointIS) continue; /* No points with that id on this process */
53963e9753d6SMatthew G. Knepley     {
53973e9753d6SMatthew G. Knepley       IS isectIS;
53983e9753d6SMatthew G. Knepley 
53993e9753d6SMatthew G. Knepley       /* TODO: Special cases of ISIntersect where it is quick to check a prior if one is a superset of the other */
54009566063dSJacob Faibussowitsch       PetscCall(ISIntersect_Caching_Internal(facetIS, pointIS, &isectIS));
54019566063dSJacob Faibussowitsch       PetscCall(ISDestroy(&pointIS));
54023e9753d6SMatthew G. Knepley       pointIS = isectIS;
54033e9753d6SMatthew G. Knepley     }
54049566063dSJacob Faibussowitsch     PetscCall(ISGetLocalSize(pointIS, &numFaces));
54059566063dSJacob Faibussowitsch     PetscCall(ISGetIndices(pointIS, &points));
54069566063dSJacob Faibussowitsch     PetscCall(PetscMalloc4(numFaces * totDim, &u, locX_t ? numFaces * totDim : 0, &u_t, numFaces * totDim * totDim, &elemMat, locA ? numFaces * totDimAux : 0, &a));
54079566063dSJacob Faibussowitsch     PetscCall(DMFieldGetDegree(coordField, pointIS, NULL, &maxDegree));
540848a46eb9SPierre Jolivet     if (maxDegree <= 1) PetscCall(DMFieldCreateDefaultQuadrature(coordField, pointIS, &qGeom));
54093e9753d6SMatthew G. Knepley     if (!qGeom) {
54103e9753d6SMatthew G. Knepley       PetscFE fe;
54113e9753d6SMatthew G. Knepley 
54129566063dSJacob Faibussowitsch       PetscCall(PetscDSGetDiscretization(prob, fieldI, (PetscObject *)&fe));
54139566063dSJacob Faibussowitsch       PetscCall(PetscFEGetFaceQuadrature(fe, &qGeom));
54149566063dSJacob Faibussowitsch       PetscCall(PetscObjectReference((PetscObject)qGeom));
54153e9753d6SMatthew G. Knepley     }
54169566063dSJacob Faibussowitsch     PetscCall(PetscQuadratureGetData(qGeom, NULL, NULL, &Nq, NULL, NULL));
54179566063dSJacob Faibussowitsch     PetscCall(DMSNESGetFEGeom(coordField, pointIS, qGeom, PETSC_TRUE, &fgeom));
54183e9753d6SMatthew G. Knepley     for (face = 0; face < numFaces; ++face) {
5419f15274beSMatthew Knepley       const PetscInt point = points[face], *support;
54203e9753d6SMatthew G. Knepley       PetscScalar   *x     = NULL;
5421f15274beSMatthew Knepley       PetscInt       i;
54223e9753d6SMatthew G. Knepley 
54239566063dSJacob Faibussowitsch       PetscCall(DMPlexGetSupport(dm, point, &support));
54249566063dSJacob Faibussowitsch       PetscCall(DMPlexVecGetClosure(plex, section, locX, support[0], NULL, &x));
54253e9753d6SMatthew G. Knepley       for (i = 0; i < totDim; ++i) u[face * totDim + i] = x[i];
54269566063dSJacob Faibussowitsch       PetscCall(DMPlexVecRestoreClosure(plex, section, locX, support[0], NULL, &x));
54273e9753d6SMatthew G. Knepley       if (locX_t) {
54289566063dSJacob Faibussowitsch         PetscCall(DMPlexVecGetClosure(plex, section, locX_t, support[0], NULL, &x));
54293e9753d6SMatthew G. Knepley         for (i = 0; i < totDim; ++i) u_t[face * totDim + i] = x[i];
54309566063dSJacob Faibussowitsch         PetscCall(DMPlexVecRestoreClosure(plex, section, locX_t, support[0], NULL, &x));
54313e9753d6SMatthew G. Knepley       }
54323e9753d6SMatthew G. Knepley       if (locA) {
54333e9753d6SMatthew G. Knepley         PetscInt subp;
54349566063dSJacob Faibussowitsch         PetscCall(DMGetEnclosurePoint(plexA, dm, encAux, support[0], &subp));
54359566063dSJacob Faibussowitsch         PetscCall(DMPlexVecGetClosure(plexA, sectionAux, locA, subp, NULL, &x));
54363e9753d6SMatthew G. Knepley         for (i = 0; i < totDimAux; ++i) a[face * totDimAux + i] = x[i];
54379566063dSJacob Faibussowitsch         PetscCall(DMPlexVecRestoreClosure(plexA, sectionAux, locA, subp, NULL, &x));
54383e9753d6SMatthew G. Knepley       }
54393e9753d6SMatthew G. Knepley     }
54409566063dSJacob Faibussowitsch     PetscCall(PetscArrayzero(elemMat, numFaces * totDim * totDim));
54413e9753d6SMatthew G. Knepley     {
54423e9753d6SMatthew G. Knepley       PetscFE  fe;
54433e9753d6SMatthew G. Knepley       PetscInt Nb;
54443e9753d6SMatthew G. Knepley       /* Conforming batches */
54453e9753d6SMatthew G. Knepley       PetscInt numChunks, numBatches, numBlocks, Ne, blockSize, batchSize;
54463e9753d6SMatthew G. Knepley       /* Remainder */
54473e9753d6SMatthew G. Knepley       PetscFEGeom *chunkGeom = NULL;
54483e9753d6SMatthew G. Knepley       PetscInt     fieldJ, Nr, offset;
54493e9753d6SMatthew G. Knepley 
54509566063dSJacob Faibussowitsch       PetscCall(PetscDSGetDiscretization(prob, fieldI, (PetscObject *)&fe));
54519566063dSJacob Faibussowitsch       PetscCall(PetscFEGetDimension(fe, &Nb));
54529566063dSJacob Faibussowitsch       PetscCall(PetscFEGetTileSizes(fe, NULL, &numBlocks, NULL, &numBatches));
54533e9753d6SMatthew G. Knepley       blockSize = Nb;
54543e9753d6SMatthew G. Knepley       batchSize = numBlocks * blockSize;
54559566063dSJacob Faibussowitsch       PetscCall(PetscFESetTileSizes(fe, blockSize, numBlocks, batchSize, numBatches));
54563e9753d6SMatthew G. Knepley       numChunks = numFaces / (numBatches * batchSize);
54573e9753d6SMatthew G. Knepley       Ne        = numChunks * numBatches * batchSize;
54583e9753d6SMatthew G. Knepley       Nr        = numFaces % (numBatches * batchSize);
54593e9753d6SMatthew G. Knepley       offset    = numFaces - Nr;
54609566063dSJacob Faibussowitsch       PetscCall(PetscFEGeomGetChunk(fgeom, 0, offset, &chunkGeom));
54613e9753d6SMatthew G. Knepley       for (fieldJ = 0; fieldJ < Nf; ++fieldJ) {
546245480ffeSMatthew G. Knepley         key.field = fieldI * Nf + fieldJ;
54639566063dSJacob Faibussowitsch         PetscCall(PetscFEIntegrateBdJacobian(prob, wf, key, Ne, chunkGeom, u, u_t, probAux, a, t, X_tShift, elemMat));
54643e9753d6SMatthew G. Knepley       }
54659566063dSJacob Faibussowitsch       PetscCall(PetscFEGeomGetChunk(fgeom, offset, numFaces, &chunkGeom));
54663e9753d6SMatthew G. Knepley       for (fieldJ = 0; fieldJ < Nf; ++fieldJ) {
546745480ffeSMatthew G. Knepley         key.field = fieldI * Nf + fieldJ;
54689566063dSJacob Faibussowitsch         PetscCall(PetscFEIntegrateBdJacobian(prob, wf, key, Nr, chunkGeom, &u[offset * totDim], u_t ? &u_t[offset * totDim] : NULL, probAux, a ? &a[offset * totDimAux] : NULL, t, X_tShift, &elemMat[offset * totDim * totDim]));
54693e9753d6SMatthew G. Knepley       }
54709566063dSJacob Faibussowitsch       PetscCall(PetscFEGeomRestoreChunk(fgeom, offset, numFaces, &chunkGeom));
54713e9753d6SMatthew G. Knepley     }
54723e9753d6SMatthew G. Knepley     for (face = 0; face < numFaces; ++face) {
54733e9753d6SMatthew G. Knepley       const PetscInt point = points[face], *support;
54743e9753d6SMatthew G. Knepley 
54753e9753d6SMatthew G. Knepley       /* Transform to global basis before insertion in Jacobian */
54769566063dSJacob Faibussowitsch       PetscCall(DMPlexGetSupport(plex, point, &support));
54779566063dSJacob Faibussowitsch       if (transform) PetscCall(DMPlexBasisTransformPointTensor_Internal(dm, tdm, tv, support[0], PETSC_TRUE, totDim, &elemMat[face * totDim * totDim]));
54789566063dSJacob Faibussowitsch       if (mesh->printFEM > 1) PetscCall(DMPrintCellMatrix(point, "BdJacobian", totDim, totDim, &elemMat[face * totDim * totDim]));
54799566063dSJacob Faibussowitsch       PetscCall(DMPlexMatSetClosure(plex, section, globalSection, JacP, support[0], &elemMat[face * totDim * totDim], ADD_VALUES));
54803e9753d6SMatthew G. Knepley     }
54819566063dSJacob Faibussowitsch     PetscCall(DMSNESRestoreFEGeom(coordField, pointIS, qGeom, PETSC_TRUE, &fgeom));
54829566063dSJacob Faibussowitsch     PetscCall(PetscQuadratureDestroy(&qGeom));
54839566063dSJacob Faibussowitsch     PetscCall(ISRestoreIndices(pointIS, &points));
54849566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&pointIS));
54859566063dSJacob Faibussowitsch     PetscCall(PetscFree4(u, u_t, elemMat, a));
54863e9753d6SMatthew G. Knepley   }
54879566063dSJacob Faibussowitsch   if (plex) PetscCall(DMDestroy(&plex));
54889566063dSJacob Faibussowitsch   if (plexA) PetscCall(DMDestroy(&plexA));
54893ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
54903e9753d6SMatthew G. Knepley }
54913e9753d6SMatthew G. Knepley 
5492d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeBdJacobianSingle(DM dm, PetscReal t, PetscWeakForm wf, DMLabel label, PetscInt numValues, const PetscInt values[], PetscInt field, Vec locX, Vec locX_t, PetscReal X_tShift, Mat Jac, Mat JacP)
5493d71ae5a4SJacob Faibussowitsch {
54943e9753d6SMatthew G. Knepley   DMField  coordField;
54953e9753d6SMatthew G. Knepley   DMLabel  depthLabel;
54963e9753d6SMatthew G. Knepley   IS       facetIS;
54973e9753d6SMatthew G. Knepley   PetscInt dim;
54983e9753d6SMatthew G. Knepley 
54993e9753d6SMatthew G. Knepley   PetscFunctionBegin;
55009566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dm, &dim));
55019566063dSJacob Faibussowitsch   PetscCall(DMPlexGetDepthLabel(dm, &depthLabel));
55029566063dSJacob Faibussowitsch   PetscCall(DMLabelGetStratumIS(depthLabel, dim - 1, &facetIS));
55039566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateField(dm, &coordField));
55049566063dSJacob Faibussowitsch   PetscCall(DMPlexComputeBdJacobian_Single_Internal(dm, t, wf, label, numValues, values, field, locX, locX_t, X_tShift, Jac, JacP, coordField, facetIS));
55059566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&facetIS));
55063ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
55073e9753d6SMatthew G. Knepley }
55083e9753d6SMatthew G. Knepley 
5509*a4e35b19SJacob Faibussowitsch static PetscErrorCode DMPlexComputeBdJacobian_Internal(DM dm, Vec locX, Vec locX_t, PetscReal t, PetscReal X_tShift, Mat Jac, Mat JacP, void *user)
5510d71ae5a4SJacob Faibussowitsch {
55113e9753d6SMatthew G. Knepley   PetscDS  prob;
55123e9753d6SMatthew G. Knepley   PetscInt dim, numBd, bd;
55133e9753d6SMatthew G. Knepley   DMLabel  depthLabel;
55143e9753d6SMatthew G. Knepley   DMField  coordField = NULL;
55153e9753d6SMatthew G. Knepley   IS       facetIS;
55163e9753d6SMatthew G. Knepley 
55173e9753d6SMatthew G. Knepley   PetscFunctionBegin;
55189566063dSJacob Faibussowitsch   PetscCall(DMGetDS(dm, &prob));
55199566063dSJacob Faibussowitsch   PetscCall(DMPlexGetDepthLabel(dm, &depthLabel));
55209566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dm, &dim));
55219566063dSJacob Faibussowitsch   PetscCall(DMLabelGetStratumIS(depthLabel, dim - 1, &facetIS));
55229566063dSJacob Faibussowitsch   PetscCall(PetscDSGetNumBoundary(prob, &numBd));
55239566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateField(dm, &coordField));
55243e9753d6SMatthew G. Knepley   for (bd = 0; bd < numBd; ++bd) {
552545480ffeSMatthew G. Knepley     PetscWeakForm           wf;
55263e9753d6SMatthew G. Knepley     DMBoundaryConditionType type;
55273e9753d6SMatthew G. Knepley     DMLabel                 label;
55283e9753d6SMatthew G. Knepley     const PetscInt         *values;
55293e9753d6SMatthew G. Knepley     PetscInt                fieldI, numValues;
55303e9753d6SMatthew G. Knepley     PetscObject             obj;
55313e9753d6SMatthew G. Knepley     PetscClassId            id;
55323e9753d6SMatthew G. Knepley 
55339566063dSJacob Faibussowitsch     PetscCall(PetscDSGetBoundary(prob, bd, &wf, &type, NULL, &label, &numValues, &values, &fieldI, NULL, NULL, NULL, NULL, NULL));
55343d3e5d66SMatthew G. Knepley     if (type & DM_BC_ESSENTIAL) continue;
55359566063dSJacob Faibussowitsch     PetscCall(PetscDSGetDiscretization(prob, fieldI, &obj));
55369566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetClassId(obj, &id));
55373d3e5d66SMatthew G. Knepley     if (id != PETSCFE_CLASSID) continue;
55389566063dSJacob Faibussowitsch     PetscCall(DMPlexComputeBdJacobian_Single_Internal(dm, t, wf, label, numValues, values, fieldI, locX, locX_t, X_tShift, Jac, JacP, coordField, facetIS));
55393e9753d6SMatthew G. Knepley   }
55409566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&facetIS));
55413ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
55423e9753d6SMatthew G. Knepley }
55433e9753d6SMatthew G. Knepley 
5544d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeJacobian_Internal(DM dm, PetscFormKey key, IS cellIS, PetscReal t, PetscReal X_tShift, Vec X, Vec X_t, Mat Jac, Mat JacP, void *user)
5545d71ae5a4SJacob Faibussowitsch {
55463e9753d6SMatthew G. Knepley   DM_Plex        *mesh  = (DM_Plex *)dm->data;
55473e9753d6SMatthew G. Knepley   const char     *name  = "Jacobian";
55489a2a23afSMatthew G. Knepley   DM              dmAux = NULL, plex, tdm;
55493e9753d6SMatthew G. Knepley   DMEnclosureType encAux;
55503e9753d6SMatthew G. Knepley   Vec             A, tv;
55513e9753d6SMatthew G. Knepley   DMField         coordField;
55523e9753d6SMatthew G. Knepley   PetscDS         prob, probAux = NULL;
5553e432b41dSStefano Zampini   PetscSection    section, globalSection, sectionAux;
55543e9753d6SMatthew G. Knepley   PetscScalar    *elemMat, *elemMatP, *elemMatD, *u, *u_t, *a = NULL;
55553e9753d6SMatthew G. Knepley   const PetscInt *cells;
55563e9753d6SMatthew G. Knepley   PetscInt        Nf, fieldI, fieldJ;
555728351e22SJed Brown   PetscInt        totDim, totDimAux = 0, cStart, cEnd, numCells, c;
5558e04ae0b4SMatthew G. Knepley   PetscBool       hasJac = PETSC_FALSE, hasPrec = PETSC_FALSE, hasDyn, hasFV = PETSC_FALSE, transform;
55593e9753d6SMatthew G. Knepley 
55603e9753d6SMatthew G. Knepley   PetscFunctionBegin;
5561af18b51aSmarkadams4   PetscCall(PetscLogEventBegin(DMPLEX_JacobianFEM, dm, 0, 0, 0));
5562e04ae0b4SMatthew G. Knepley   if (!cellIS) goto end;
55639566063dSJacob Faibussowitsch   PetscCall(ISGetPointRange(cellIS, &cStart, &cEnd, &cells));
5564437e83fbSMatthew G. Knepley   PetscCall(ISGetLocalSize(cellIS, &numCells));
5565437e83fbSMatthew G. Knepley   if (cStart >= cEnd) goto end;
55669566063dSJacob Faibussowitsch   PetscCall(DMHasBasisTransform(dm, &transform));
55679566063dSJacob Faibussowitsch   PetscCall(DMGetBasisTransformDM_Internal(dm, &tdm));
55689566063dSJacob Faibussowitsch   PetscCall(DMGetBasisTransformVec_Internal(dm, &tv));
55699566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dm, &section));
55709566063dSJacob Faibussowitsch   PetscCall(DMGetGlobalSection(dm, &globalSection));
557107218a29SMatthew G. Knepley   PetscCall(DMGetCellDS(dm, cells ? cells[cStart] : cStart, &prob, NULL));
55729566063dSJacob Faibussowitsch   PetscCall(PetscDSGetNumFields(prob, &Nf));
55739566063dSJacob Faibussowitsch   PetscCall(PetscDSGetTotalDimension(prob, &totDim));
55749566063dSJacob Faibussowitsch   PetscCall(PetscDSHasJacobian(prob, &hasJac));
55759566063dSJacob Faibussowitsch   PetscCall(PetscDSHasJacobianPreconditioner(prob, &hasPrec));
55763e9753d6SMatthew G. Knepley   /* user passed in the same matrix, avoid double contributions and
55773e9753d6SMatthew G. Knepley      only assemble the Jacobian */
55783e9753d6SMatthew G. Knepley   if (hasJac && Jac == JacP) hasPrec = PETSC_FALSE;
55799566063dSJacob Faibussowitsch   PetscCall(PetscDSHasDynamicJacobian(prob, &hasDyn));
55803e9753d6SMatthew G. Knepley   hasDyn = hasDyn && (X_tShift != 0.0) ? PETSC_TRUE : PETSC_FALSE;
55819566063dSJacob Faibussowitsch   PetscCall(DMGetAuxiliaryVec(dm, key.label, key.value, key.part, &A));
55829a2a23afSMatthew G. Knepley   if (A) {
55839566063dSJacob Faibussowitsch     PetscCall(VecGetDM(A, &dmAux));
55849566063dSJacob Faibussowitsch     PetscCall(DMGetEnclosureRelation(dmAux, dm, &encAux));
55859566063dSJacob Faibussowitsch     PetscCall(DMConvert(dmAux, DMPLEX, &plex));
55869566063dSJacob Faibussowitsch     PetscCall(DMGetLocalSection(plex, &sectionAux));
55879566063dSJacob Faibussowitsch     PetscCall(DMGetDS(dmAux, &probAux));
55889566063dSJacob Faibussowitsch     PetscCall(PetscDSGetTotalDimension(probAux, &totDimAux));
55893e9753d6SMatthew G. Knepley   }
55909566063dSJacob Faibussowitsch   PetscCall(PetscMalloc5(numCells * totDim, &u, X_t ? numCells * totDim : 0, &u_t, hasJac ? numCells * totDim * totDim : 0, &elemMat, hasPrec ? numCells * totDim * totDim : 0, &elemMatP, hasDyn ? numCells * totDim * totDim : 0, &elemMatD));
55919566063dSJacob Faibussowitsch   if (dmAux) PetscCall(PetscMalloc1(numCells * totDimAux, &a));
55929566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateField(dm, &coordField));
55933e9753d6SMatthew G. Knepley   for (c = cStart; c < cEnd; ++c) {
55943e9753d6SMatthew G. Knepley     const PetscInt cell = cells ? cells[c] : c;
55953e9753d6SMatthew G. Knepley     const PetscInt cind = c - cStart;
55963e9753d6SMatthew G. Knepley     PetscScalar   *x = NULL, *x_t = NULL;
55973e9753d6SMatthew G. Knepley     PetscInt       i;
55983e9753d6SMatthew G. Knepley 
55999566063dSJacob Faibussowitsch     PetscCall(DMPlexVecGetClosure(dm, section, X, cell, NULL, &x));
56003e9753d6SMatthew G. Knepley     for (i = 0; i < totDim; ++i) u[cind * totDim + i] = x[i];
56019566063dSJacob Faibussowitsch     PetscCall(DMPlexVecRestoreClosure(dm, section, X, cell, NULL, &x));
56023e9753d6SMatthew G. Knepley     if (X_t) {
56039566063dSJacob Faibussowitsch       PetscCall(DMPlexVecGetClosure(dm, section, X_t, cell, NULL, &x_t));
56043e9753d6SMatthew G. Knepley       for (i = 0; i < totDim; ++i) u_t[cind * totDim + i] = x_t[i];
56059566063dSJacob Faibussowitsch       PetscCall(DMPlexVecRestoreClosure(dm, section, X_t, cell, NULL, &x_t));
56063e9753d6SMatthew G. Knepley     }
56073e9753d6SMatthew G. Knepley     if (dmAux) {
56083e9753d6SMatthew G. Knepley       PetscInt subcell;
56099566063dSJacob Faibussowitsch       PetscCall(DMGetEnclosurePoint(dmAux, dm, encAux, cell, &subcell));
56109566063dSJacob Faibussowitsch       PetscCall(DMPlexVecGetClosure(plex, sectionAux, A, subcell, NULL, &x));
56113e9753d6SMatthew G. Knepley       for (i = 0; i < totDimAux; ++i) a[cind * totDimAux + i] = x[i];
56129566063dSJacob Faibussowitsch       PetscCall(DMPlexVecRestoreClosure(plex, sectionAux, A, subcell, NULL, &x));
56133e9753d6SMatthew G. Knepley     }
56143e9753d6SMatthew G. Knepley   }
56159566063dSJacob Faibussowitsch   if (hasJac) PetscCall(PetscArrayzero(elemMat, numCells * totDim * totDim));
56169566063dSJacob Faibussowitsch   if (hasPrec) PetscCall(PetscArrayzero(elemMatP, numCells * totDim * totDim));
56179566063dSJacob Faibussowitsch   if (hasDyn) PetscCall(PetscArrayzero(elemMatD, numCells * totDim * totDim));
56183e9753d6SMatthew G. Knepley   for (fieldI = 0; fieldI < Nf; ++fieldI) {
56193e9753d6SMatthew G. Knepley     PetscClassId    id;
56203e9753d6SMatthew G. Knepley     PetscFE         fe;
56213e9753d6SMatthew G. Knepley     PetscQuadrature qGeom = NULL;
56223e9753d6SMatthew G. Knepley     PetscInt        Nb;
56233e9753d6SMatthew G. Knepley     /* Conforming batches */
56243e9753d6SMatthew G. Knepley     PetscInt numChunks, numBatches, numBlocks, Ne, blockSize, batchSize;
56253e9753d6SMatthew G. Knepley     /* Remainder */
56263e9753d6SMatthew G. Knepley     PetscInt     Nr, offset, Nq;
56273e9753d6SMatthew G. Knepley     PetscInt     maxDegree;
56283e9753d6SMatthew G. Knepley     PetscFEGeom *cgeomFEM, *chunkGeom = NULL, *remGeom = NULL;
56293e9753d6SMatthew G. Knepley 
56309566063dSJacob Faibussowitsch     PetscCall(PetscDSGetDiscretization(prob, fieldI, (PetscObject *)&fe));
56319566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetClassId((PetscObject)fe, &id));
56329371c9d4SSatish Balay     if (id == PETSCFV_CLASSID) {
56339371c9d4SSatish Balay       hasFV = PETSC_TRUE;
56349371c9d4SSatish Balay       continue;
56359371c9d4SSatish Balay     }
56369566063dSJacob Faibussowitsch     PetscCall(PetscFEGetDimension(fe, &Nb));
56379566063dSJacob Faibussowitsch     PetscCall(PetscFEGetTileSizes(fe, NULL, &numBlocks, NULL, &numBatches));
56389566063dSJacob Faibussowitsch     PetscCall(DMFieldGetDegree(coordField, cellIS, NULL, &maxDegree));
563948a46eb9SPierre Jolivet     if (maxDegree <= 1) PetscCall(DMFieldCreateDefaultQuadrature(coordField, cellIS, &qGeom));
56403e9753d6SMatthew G. Knepley     if (!qGeom) {
56419566063dSJacob Faibussowitsch       PetscCall(PetscFEGetQuadrature(fe, &qGeom));
56429566063dSJacob Faibussowitsch       PetscCall(PetscObjectReference((PetscObject)qGeom));
56433e9753d6SMatthew G. Knepley     }
56449566063dSJacob Faibussowitsch     PetscCall(PetscQuadratureGetData(qGeom, NULL, NULL, &Nq, NULL, NULL));
56459566063dSJacob Faibussowitsch     PetscCall(DMSNESGetFEGeom(coordField, cellIS, qGeom, PETSC_FALSE, &cgeomFEM));
56463e9753d6SMatthew G. Knepley     blockSize = Nb;
56473e9753d6SMatthew G. Knepley     batchSize = numBlocks * blockSize;
56489566063dSJacob Faibussowitsch     PetscCall(PetscFESetTileSizes(fe, blockSize, numBlocks, batchSize, numBatches));
56493e9753d6SMatthew G. Knepley     numChunks = numCells / (numBatches * batchSize);
56503e9753d6SMatthew G. Knepley     Ne        = numChunks * numBatches * batchSize;
56513e9753d6SMatthew G. Knepley     Nr        = numCells % (numBatches * batchSize);
56523e9753d6SMatthew G. Knepley     offset    = numCells - Nr;
56539566063dSJacob Faibussowitsch     PetscCall(PetscFEGeomGetChunk(cgeomFEM, 0, offset, &chunkGeom));
56549566063dSJacob Faibussowitsch     PetscCall(PetscFEGeomGetChunk(cgeomFEM, offset, numCells, &remGeom));
56553e9753d6SMatthew G. Knepley     for (fieldJ = 0; fieldJ < Nf; ++fieldJ) {
56566528b96dSMatthew G. Knepley       key.field = fieldI * Nf + fieldJ;
56573e9753d6SMatthew G. Knepley       if (hasJac) {
56589566063dSJacob Faibussowitsch         PetscCall(PetscFEIntegrateJacobian(prob, PETSCFE_JACOBIAN, key, Ne, chunkGeom, u, u_t, probAux, a, t, X_tShift, elemMat));
5659072f5ffdSStefano Zampini         PetscCall(PetscFEIntegrateJacobian(prob, PETSCFE_JACOBIAN, key, Nr, remGeom, &u[offset * totDim], u_t ? &u_t[offset * totDim] : NULL, probAux, a ? &a[offset * totDimAux] : NULL, t, X_tShift, &elemMat[offset * totDim * totDim]));
56603e9753d6SMatthew G. Knepley       }
56613e9753d6SMatthew G. Knepley       if (hasPrec) {
56629566063dSJacob Faibussowitsch         PetscCall(PetscFEIntegrateJacobian(prob, PETSCFE_JACOBIAN_PRE, key, Ne, chunkGeom, u, u_t, probAux, a, t, X_tShift, elemMatP));
5663072f5ffdSStefano Zampini         PetscCall(PetscFEIntegrateJacobian(prob, PETSCFE_JACOBIAN_PRE, key, Nr, remGeom, &u[offset * totDim], u_t ? &u_t[offset * totDim] : NULL, probAux, a ? &a[offset * totDimAux] : NULL, t, X_tShift, &elemMatP[offset * totDim * totDim]));
56643e9753d6SMatthew G. Knepley       }
56653e9753d6SMatthew G. Knepley       if (hasDyn) {
56669566063dSJacob Faibussowitsch         PetscCall(PetscFEIntegrateJacobian(prob, PETSCFE_JACOBIAN_DYN, key, Ne, chunkGeom, u, u_t, probAux, a, t, X_tShift, elemMatD));
5667072f5ffdSStefano Zampini         PetscCall(PetscFEIntegrateJacobian(prob, PETSCFE_JACOBIAN_DYN, key, Nr, remGeom, &u[offset * totDim], u_t ? &u_t[offset * totDim] : NULL, probAux, a ? &a[offset * totDimAux] : NULL, t, X_tShift, &elemMatD[offset * totDim * totDim]));
56683e9753d6SMatthew G. Knepley       }
56693e9753d6SMatthew G. Knepley     }
56709566063dSJacob Faibussowitsch     PetscCall(PetscFEGeomRestoreChunk(cgeomFEM, offset, numCells, &remGeom));
56719566063dSJacob Faibussowitsch     PetscCall(PetscFEGeomRestoreChunk(cgeomFEM, 0, offset, &chunkGeom));
56729566063dSJacob Faibussowitsch     PetscCall(DMSNESRestoreFEGeom(coordField, cellIS, qGeom, PETSC_FALSE, &cgeomFEM));
56739566063dSJacob Faibussowitsch     PetscCall(PetscQuadratureDestroy(&qGeom));
56743e9753d6SMatthew G. Knepley   }
56753e9753d6SMatthew G. Knepley   /*   Add contribution from X_t */
56769371c9d4SSatish Balay   if (hasDyn) {
56779371c9d4SSatish Balay     for (c = 0; c < numCells * totDim * totDim; ++c) elemMat[c] += X_tShift * elemMatD[c];
56789371c9d4SSatish Balay   }
56793e9753d6SMatthew G. Knepley   if (hasFV) {
56803e9753d6SMatthew G. Knepley     PetscClassId id;
56813e9753d6SMatthew G. Knepley     PetscFV      fv;
56823e9753d6SMatthew G. Knepley     PetscInt     offsetI, NcI, NbI = 1, fc, f;
56833e9753d6SMatthew G. Knepley 
56843e9753d6SMatthew G. Knepley     for (fieldI = 0; fieldI < Nf; ++fieldI) {
56859566063dSJacob Faibussowitsch       PetscCall(PetscDSGetDiscretization(prob, fieldI, (PetscObject *)&fv));
56869566063dSJacob Faibussowitsch       PetscCall(PetscDSGetFieldOffset(prob, fieldI, &offsetI));
56879566063dSJacob Faibussowitsch       PetscCall(PetscObjectGetClassId((PetscObject)fv, &id));
56883e9753d6SMatthew G. Knepley       if (id != PETSCFV_CLASSID) continue;
56893e9753d6SMatthew G. Knepley       /* Put in the identity */
56909566063dSJacob Faibussowitsch       PetscCall(PetscFVGetNumComponents(fv, &NcI));
56913e9753d6SMatthew G. Knepley       for (c = cStart; c < cEnd; ++c) {
56923e9753d6SMatthew G. Knepley         const PetscInt cind    = c - cStart;
56933e9753d6SMatthew G. Knepley         const PetscInt eOffset = cind * totDim * totDim;
56943e9753d6SMatthew G. Knepley         for (fc = 0; fc < NcI; ++fc) {
56953e9753d6SMatthew G. Knepley           for (f = 0; f < NbI; ++f) {
56963e9753d6SMatthew G. Knepley             const PetscInt i = offsetI + f * NcI + fc;
56973e9753d6SMatthew G. Knepley             if (hasPrec) {
5698ad540459SPierre Jolivet               if (hasJac) elemMat[eOffset + i * totDim + i] = 1.0;
56993e9753d6SMatthew G. Knepley               elemMatP[eOffset + i * totDim + i] = 1.0;
57009371c9d4SSatish Balay             } else {
57019371c9d4SSatish Balay               elemMat[eOffset + i * totDim + i] = 1.0;
57029371c9d4SSatish Balay             }
57033e9753d6SMatthew G. Knepley           }
57043e9753d6SMatthew G. Knepley         }
57053e9753d6SMatthew G. Knepley       }
57063e9753d6SMatthew G. Knepley     }
57073e9753d6SMatthew G. Knepley     /* No allocated space for FV stuff, so ignore the zero entries */
57089566063dSJacob Faibussowitsch     PetscCall(MatSetOption(JacP, MAT_IGNORE_ZERO_ENTRIES, PETSC_TRUE));
57093e9753d6SMatthew G. Knepley   }
57103e9753d6SMatthew G. Knepley   /* Insert values into matrix */
57113e9753d6SMatthew G. Knepley   for (c = cStart; c < cEnd; ++c) {
57123e9753d6SMatthew G. Knepley     const PetscInt cell = cells ? cells[c] : c;
57133e9753d6SMatthew G. Knepley     const PetscInt cind = c - cStart;
57143e9753d6SMatthew G. Knepley 
57153e9753d6SMatthew G. Knepley     /* Transform to global basis before insertion in Jacobian */
57169566063dSJacob Faibussowitsch     if (transform) PetscCall(DMPlexBasisTransformPointTensor_Internal(dm, tdm, tv, cell, PETSC_TRUE, totDim, &elemMat[cind * totDim * totDim]));
57173e9753d6SMatthew G. Knepley     if (hasPrec) {
57183e9753d6SMatthew G. Knepley       if (hasJac) {
57199566063dSJacob Faibussowitsch         if (mesh->printFEM > 1) PetscCall(DMPrintCellMatrix(cell, name, totDim, totDim, &elemMat[cind * totDim * totDim]));
57209566063dSJacob Faibussowitsch         PetscCall(DMPlexMatSetClosure(dm, section, globalSection, Jac, cell, &elemMat[cind * totDim * totDim], ADD_VALUES));
57213e9753d6SMatthew G. Knepley       }
57229566063dSJacob Faibussowitsch       if (mesh->printFEM > 1) PetscCall(DMPrintCellMatrix(cell, name, totDim, totDim, &elemMatP[cind * totDim * totDim]));
57239566063dSJacob Faibussowitsch       PetscCall(DMPlexMatSetClosure(dm, section, globalSection, JacP, cell, &elemMatP[cind * totDim * totDim], ADD_VALUES));
57243e9753d6SMatthew G. Knepley     } else {
57253e9753d6SMatthew G. Knepley       if (hasJac) {
57269566063dSJacob Faibussowitsch         if (mesh->printFEM > 1) PetscCall(DMPrintCellMatrix(cell, name, totDim, totDim, &elemMat[cind * totDim * totDim]));
57279566063dSJacob Faibussowitsch         PetscCall(DMPlexMatSetClosure(dm, section, globalSection, JacP, cell, &elemMat[cind * totDim * totDim], ADD_VALUES));
57283e9753d6SMatthew G. Knepley       }
57293e9753d6SMatthew G. Knepley     }
57303e9753d6SMatthew G. Knepley   }
57319566063dSJacob Faibussowitsch   PetscCall(ISRestorePointRange(cellIS, &cStart, &cEnd, &cells));
57329566063dSJacob Faibussowitsch   if (hasFV) PetscCall(MatSetOption(JacP, MAT_IGNORE_ZERO_ENTRIES, PETSC_FALSE));
57339566063dSJacob Faibussowitsch   PetscCall(PetscFree5(u, u_t, elemMat, elemMatP, elemMatD));
57343e9753d6SMatthew G. Knepley   if (dmAux) {
57359566063dSJacob Faibussowitsch     PetscCall(PetscFree(a));
57369566063dSJacob Faibussowitsch     PetscCall(DMDestroy(&plex));
57373e9753d6SMatthew G. Knepley   }
57383e9753d6SMatthew G. Knepley   /* Compute boundary integrals */
57399566063dSJacob Faibussowitsch   PetscCall(DMPlexComputeBdJacobian_Internal(dm, X, X_t, t, X_tShift, Jac, JacP, user));
57403e9753d6SMatthew G. Knepley   /* Assemble matrix */
57419371c9d4SSatish Balay end : {
5742e04ae0b4SMatthew G. Knepley   PetscBool assOp = hasJac && hasPrec ? PETSC_TRUE : PETSC_FALSE, gassOp;
5743e04ae0b4SMatthew G. Knepley 
5744712fec58SPierre Jolivet   PetscCall(MPIU_Allreduce(&assOp, &gassOp, 1, MPIU_BOOL, MPI_LOR, PetscObjectComm((PetscObject)dm)));
57453e9753d6SMatthew G. Knepley   if (hasJac && hasPrec) {
57469566063dSJacob Faibussowitsch     PetscCall(MatAssemblyBegin(Jac, MAT_FINAL_ASSEMBLY));
57479566063dSJacob Faibussowitsch     PetscCall(MatAssemblyEnd(Jac, MAT_FINAL_ASSEMBLY));
57483e9753d6SMatthew G. Knepley   }
5749e04ae0b4SMatthew G. Knepley }
57509566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(JacP, MAT_FINAL_ASSEMBLY));
57519566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(JacP, MAT_FINAL_ASSEMBLY));
57529566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(DMPLEX_JacobianFEM, dm, 0, 0, 0));
57533ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
57543e9753d6SMatthew G. Knepley }
57553e9753d6SMatthew G. Knepley 
5756d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeJacobian_Hybrid_Internal(DM dm, PetscFormKey key[], IS cellIS, PetscReal t, PetscReal X_tShift, Vec locX, Vec locX_t, Mat Jac, Mat JacP, void *user)
5757d71ae5a4SJacob Faibussowitsch {
57583e9753d6SMatthew G. Knepley   DM_Plex        *mesh          = (DM_Plex *)dm->data;
57593e9753d6SMatthew G. Knepley   const char     *name          = "Hybrid Jacobian";
5760148442b3SMatthew G. Knepley   DM              dmAux[3]      = {NULL, NULL, NULL};
5761148442b3SMatthew G. Knepley   DMLabel         ghostLabel    = NULL;
57623e9753d6SMatthew G. Knepley   DM              plex          = NULL;
57633e9753d6SMatthew G. Knepley   DM              plexA         = NULL;
5764148442b3SMatthew G. Knepley   PetscDS         ds            = NULL;
576507218a29SMatthew G. Knepley   PetscDS         dsIn          = NULL;
5766148442b3SMatthew G. Knepley   PetscDS         dsAux[3]      = {NULL, NULL, NULL};
5767148442b3SMatthew G. Knepley   Vec             locA[3]       = {NULL, NULL, NULL};
576807218a29SMatthew G. Knepley   DM              dmScale[3]    = {NULL, NULL, NULL};
576907218a29SMatthew G. Knepley   PetscDS         dsScale[3]    = {NULL, NULL, NULL};
577007218a29SMatthew G. Knepley   Vec             locS[3]       = {NULL, NULL, NULL};
57713e9753d6SMatthew G. Knepley   PetscSection    section       = NULL;
5772148442b3SMatthew G. Knepley   PetscSection    sectionAux[3] = {NULL, NULL, NULL};
57733e9753d6SMatthew G. Knepley   DMField         coordField    = NULL;
577407218a29SMatthew G. Knepley   PetscScalar    *a[3]          = {NULL, NULL, NULL};
577507218a29SMatthew G. Knepley   PetscScalar    *s[3]          = {NULL, NULL, NULL};
577607218a29SMatthew G. Knepley   PetscScalar    *u             = NULL, *u_t;
577707218a29SMatthew G. Knepley   PetscScalar    *elemMatNeg, *elemMatPos, *elemMatCoh;
577807218a29SMatthew G. Knepley   PetscScalar    *elemMatNegP, *elemMatPosP, *elemMatCohP;
5779e432b41dSStefano Zampini   PetscSection    globalSection;
57803e9753d6SMatthew G. Knepley   IS              chunkIS;
57813e9753d6SMatthew G. Knepley   const PetscInt *cells;
57823e9753d6SMatthew G. Knepley   PetscInt       *faces;
57833e9753d6SMatthew G. Knepley   PetscInt        cStart, cEnd, numCells;
57843e2b0218SMatthew G. Knepley   PetscInt        Nf, fieldI, fieldJ, totDim, totDimIn, totDimAux[3], totDimScale[3], numChunks, cellChunkSize, chunk;
57853e9753d6SMatthew G. Knepley   PetscInt        maxDegree  = PETSC_MAX_INT;
57863e9753d6SMatthew G. Knepley   PetscQuadrature affineQuad = NULL, *quads = NULL;
57873e9753d6SMatthew G. Knepley   PetscFEGeom    *affineGeom = NULL, **geoms = NULL;
5788e432b41dSStefano Zampini   PetscBool       hasBdJac, hasBdPrec;
57893e9753d6SMatthew G. Knepley 
57903e9753d6SMatthew G. Knepley   PetscFunctionBegin;
57913ba16761SJacob Faibussowitsch   if (!cellIS) PetscFunctionReturn(PETSC_SUCCESS);
5792437e83fbSMatthew G. Knepley   PetscCall(ISGetPointRange(cellIS, &cStart, &cEnd, &cells));
5793437e83fbSMatthew G. Knepley   PetscCall(ISGetLocalSize(cellIS, &numCells));
57943ba16761SJacob Faibussowitsch   if (cStart >= cEnd) PetscFunctionReturn(PETSC_SUCCESS);
57955fedec97SMatthew G. Knepley   if ((key[0].label == key[1].label) && (key[0].value == key[1].value) && (key[0].part == key[1].part)) {
57965fedec97SMatthew G. Knepley     const char *name;
57979566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetName((PetscObject)key[0].label, &name));
579863a3b9bcSJacob Faibussowitsch     SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Form keys for each side of a cohesive surface must be different (%s, %" PetscInt_FMT ", %" PetscInt_FMT ")", name, key[0].value, key[0].part);
57995fedec97SMatthew G. Knepley   }
58009566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(DMPLEX_JacobianFEM, dm, 0, 0, 0));
58019566063dSJacob Faibussowitsch   PetscCall(DMConvert(dm, DMPLEX, &plex));
58029566063dSJacob Faibussowitsch   PetscCall(DMGetSection(dm, &section));
58039566063dSJacob Faibussowitsch   PetscCall(DMGetGlobalSection(dm, &globalSection));
58049566063dSJacob Faibussowitsch   PetscCall(DMGetLabel(dm, "ghost", &ghostLabel));
580507218a29SMatthew G. Knepley   PetscCall(DMGetCellDS(dm, cells ? cells[cStart] : cStart, &ds, &dsIn));
58069566063dSJacob Faibussowitsch   PetscCall(PetscDSGetNumFields(ds, &Nf));
58079566063dSJacob Faibussowitsch   PetscCall(PetscDSGetTotalDimension(ds, &totDim));
580807218a29SMatthew G. Knepley   PetscCall(PetscDSGetTotalDimension(dsIn, &totDimIn));
58099566063dSJacob Faibussowitsch   PetscCall(PetscDSHasBdJacobian(ds, &hasBdJac));
58109566063dSJacob Faibussowitsch   PetscCall(PetscDSHasBdJacobianPreconditioner(ds, &hasBdPrec));
58119566063dSJacob Faibussowitsch   PetscCall(DMGetAuxiliaryVec(dm, key[2].label, key[2].value, key[2].part, &locA[2]));
5812148442b3SMatthew G. Knepley   if (locA[2]) {
58131059d808SMatthew G. Knepley     const PetscInt cellStart = cells ? cells[cStart] : cStart;
58141059d808SMatthew G. Knepley 
58159566063dSJacob Faibussowitsch     PetscCall(VecGetDM(locA[2], &dmAux[2]));
58169566063dSJacob Faibussowitsch     PetscCall(DMConvert(dmAux[2], DMPLEX, &plexA));
58179566063dSJacob Faibussowitsch     PetscCall(DMGetSection(dmAux[2], &sectionAux[2]));
581807218a29SMatthew G. Knepley     PetscCall(DMGetCellDS(dmAux[2], cellStart, &dsAux[2], NULL));
58199566063dSJacob Faibussowitsch     PetscCall(PetscDSGetTotalDimension(dsAux[2], &totDimAux[2]));
5820148442b3SMatthew G. Knepley     {
5821148442b3SMatthew G. Knepley       const PetscInt *cone;
5822148442b3SMatthew G. Knepley       PetscInt        c;
5823148442b3SMatthew G. Knepley 
58241059d808SMatthew G. Knepley       PetscCall(DMPlexGetCone(dm, cellStart, &cone));
5825148442b3SMatthew G. Knepley       for (c = 0; c < 2; ++c) {
5826148442b3SMatthew G. Knepley         const PetscInt *support;
5827148442b3SMatthew G. Knepley         PetscInt        ssize, s;
5828148442b3SMatthew G. Knepley 
58299566063dSJacob Faibussowitsch         PetscCall(DMPlexGetSupport(dm, cone[c], &support));
58309566063dSJacob Faibussowitsch         PetscCall(DMPlexGetSupportSize(dm, cone[c], &ssize));
58311059d808SMatthew G. Knepley         PetscCheck(ssize == 2, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Face %" PetscInt_FMT " from cell %" PetscInt_FMT " has support size %" PetscInt_FMT " != 2", cone[c], cellStart, ssize);
58321059d808SMatthew G. Knepley         if (support[0] == cellStart) s = 1;
58331059d808SMatthew G. Knepley         else if (support[1] == cellStart) s = 0;
58341059d808SMatthew G. Knepley         else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Face %" PetscInt_FMT " does not have cell %" PetscInt_FMT " in its support", cone[c], cellStart);
58359566063dSJacob Faibussowitsch         PetscCall(DMGetAuxiliaryVec(dm, key[c].label, key[c].value, key[c].part, &locA[c]));
58369566063dSJacob Faibussowitsch         if (locA[c]) PetscCall(VecGetDM(locA[c], &dmAux[c]));
5837ad540459SPierre Jolivet         else dmAux[c] = dmAux[2];
583807218a29SMatthew G. Knepley         PetscCall(DMGetCellDS(dmAux[c], support[s], &dsAux[c], NULL));
58399566063dSJacob Faibussowitsch         PetscCall(PetscDSGetTotalDimension(dsAux[c], &totDimAux[c]));
5840148442b3SMatthew G. Knepley       }
5841148442b3SMatthew G. Knepley     }
58423e9753d6SMatthew G. Knepley   }
584307218a29SMatthew G. Knepley   /* Handle mass matrix scaling
584407218a29SMatthew G. Knepley        The field in key[2] is the field to be scaled, and the scaling field is the first in the dsScale */
584507218a29SMatthew G. Knepley   PetscCall(DMGetAuxiliaryVec(dm, key[2].label, -key[2].value, key[2].part, &locS[2]));
584607218a29SMatthew G. Knepley   if (locS[2]) {
58473e2b0218SMatthew G. Knepley     const PetscInt cellStart = cells ? cells[cStart] : cStart;
584807218a29SMatthew G. Knepley     PetscInt       Nb, Nbs;
584907218a29SMatthew G. Knepley 
585007218a29SMatthew G. Knepley     PetscCall(VecGetDM(locS[2], &dmScale[2]));
585107218a29SMatthew G. Knepley     PetscCall(DMGetCellDS(dmScale[2], cells ? cells[cStart] : cStart, &dsScale[2], NULL));
58523e2b0218SMatthew G. Knepley     PetscCall(PetscDSGetTotalDimension(dsScale[2], &totDimScale[2]));
585307218a29SMatthew G. Knepley     // BRAD: This is not set correctly
585407218a29SMatthew G. Knepley     key[2].field = 2;
585507218a29SMatthew G. Knepley     PetscCall(PetscDSGetFieldSize(ds, key[2].field, &Nb));
585607218a29SMatthew G. Knepley     PetscCall(PetscDSGetFieldSize(dsScale[2], 0, &Nbs));
585707218a29SMatthew G. Knepley     PetscCheck(Nb == Nbs, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "Field %" PetscInt_FMT " of size %" PetscInt_FMT " cannot be scaled by field of size %" PetscInt_FMT, key[2].field, Nb, Nbs);
58583e2b0218SMatthew G. Knepley     {
58593e2b0218SMatthew G. Knepley       const PetscInt *cone;
58603e2b0218SMatthew G. Knepley       PetscInt        c;
58613e2b0218SMatthew G. Knepley 
58623e2b0218SMatthew G. Knepley       locS[1] = locS[0] = locS[2];
58633e2b0218SMatthew G. Knepley       dmScale[1] = dmScale[0] = dmScale[2];
58643e2b0218SMatthew G. Knepley       PetscCall(DMPlexGetCone(dm, cellStart, &cone));
58653e2b0218SMatthew G. Knepley       for (c = 0; c < 2; ++c) {
58663e2b0218SMatthew G. Knepley         const PetscInt *support;
58673e2b0218SMatthew G. Knepley         PetscInt        ssize, s;
58683e2b0218SMatthew G. Knepley 
58693e2b0218SMatthew G. Knepley         PetscCall(DMPlexGetSupport(dm, cone[c], &support));
58703e2b0218SMatthew G. Knepley         PetscCall(DMPlexGetSupportSize(dm, cone[c], &ssize));
58713e2b0218SMatthew G. Knepley         PetscCheck(ssize == 2, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Face %" PetscInt_FMT " from cell %" PetscInt_FMT " has support size %" PetscInt_FMT " != 2", cone[c], cellStart, ssize);
58723e2b0218SMatthew G. Knepley         if (support[0] == cellStart) s = 1;
58733e2b0218SMatthew G. Knepley         else if (support[1] == cellStart) s = 0;
58743e2b0218SMatthew G. Knepley         else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Face %" PetscInt_FMT " does not have cell %" PetscInt_FMT " in its support", cone[c], cellStart);
58753e2b0218SMatthew G. Knepley         PetscCall(DMGetCellDS(dmScale[c], support[s], &dsScale[c], NULL));
58763e2b0218SMatthew G. Knepley         PetscCall(PetscDSGetTotalDimension(dsScale[c], &totDimScale[c]));
58773e2b0218SMatthew G. Knepley       }
58783e2b0218SMatthew G. Knepley     }
587907218a29SMatthew G. Knepley   }
588007218a29SMatthew G. Knepley   /* 2: Setup geometric data */
58819566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateField(dm, &coordField));
58829566063dSJacob Faibussowitsch   PetscCall(DMFieldGetDegree(coordField, cellIS, NULL, &maxDegree));
58833e9753d6SMatthew G. Knepley   if (maxDegree > 1) {
58843e9753d6SMatthew G. Knepley     PetscInt f;
58859566063dSJacob Faibussowitsch     PetscCall(PetscCalloc2(Nf, &quads, Nf, &geoms));
58863e9753d6SMatthew G. Knepley     for (f = 0; f < Nf; ++f) {
58873e9753d6SMatthew G. Knepley       PetscFE fe;
58883e9753d6SMatthew G. Knepley 
58899566063dSJacob Faibussowitsch       PetscCall(PetscDSGetDiscretization(ds, f, (PetscObject *)&fe));
58903e9753d6SMatthew G. Knepley       if (fe) {
58919566063dSJacob Faibussowitsch         PetscCall(PetscFEGetQuadrature(fe, &quads[f]));
58929566063dSJacob Faibussowitsch         PetscCall(PetscObjectReference((PetscObject)quads[f]));
58933e9753d6SMatthew G. Knepley       }
58943e9753d6SMatthew G. Knepley     }
58953e9753d6SMatthew G. Knepley   }
589607218a29SMatthew G. Knepley   /* Loop over chunks */
58973e9753d6SMatthew G. Knepley   cellChunkSize = numCells;
58983e9753d6SMatthew G. Knepley   numChunks     = !numCells ? 0 : PetscCeilReal(((PetscReal)numCells) / cellChunkSize);
589907218a29SMatthew G. Knepley   PetscCall(PetscCalloc1(2 * cellChunkSize, &faces));
5900a4158a15SMatthew G. Knepley   PetscCall(ISCreateGeneral(PETSC_COMM_SELF, 1 * cellChunkSize, faces, PETSC_USE_POINTER, &chunkIS));
590107218a29SMatthew G. Knepley   /* Extract field coefficients */
590207218a29SMatthew G. Knepley   /* NOTE This needs the end cap faces to have identical orientations */
590307218a29SMatthew G. Knepley   PetscCall(DMPlexGetHybridCellFields(dm, cellIS, locX, locX_t, locA[2], &u, &u_t, &a[2]));
590407218a29SMatthew G. Knepley   PetscCall(DMPlexGetHybridFields(dm, dmAux, dsAux, cellIS, locA, PETSC_TRUE, a));
59058bf0a22dSMatthew G. Knepley   PetscCall(DMPlexGetHybridFields(dm, dmScale, dsScale, cellIS, locS, PETSC_TRUE, s));
590607218a29SMatthew G. Knepley   PetscCall(DMGetWorkArray(dm, hasBdJac ? cellChunkSize * totDim * totDim : 0, MPIU_SCALAR, &elemMatNeg));
590707218a29SMatthew G. Knepley   PetscCall(DMGetWorkArray(dm, hasBdJac ? cellChunkSize * totDim * totDim : 0, MPIU_SCALAR, &elemMatPos));
590807218a29SMatthew G. Knepley   PetscCall(DMGetWorkArray(dm, hasBdJac ? cellChunkSize * totDim * totDim : 0, MPIU_SCALAR, &elemMatCoh));
590907218a29SMatthew G. Knepley   PetscCall(DMGetWorkArray(dm, hasBdPrec ? cellChunkSize * totDim * totDim : 0, MPIU_SCALAR, &elemMatNegP));
591007218a29SMatthew G. Knepley   PetscCall(DMGetWorkArray(dm, hasBdPrec ? cellChunkSize * totDim * totDim : 0, MPIU_SCALAR, &elemMatPosP));
591107218a29SMatthew G. Knepley   PetscCall(DMGetWorkArray(dm, hasBdPrec ? cellChunkSize * totDim * totDim : 0, MPIU_SCALAR, &elemMatCohP));
59123e9753d6SMatthew G. Knepley   for (chunk = 0; chunk < numChunks; ++chunk) {
59133e9753d6SMatthew G. Knepley     PetscInt cS = cStart + chunk * cellChunkSize, cE = PetscMin(cS + cellChunkSize, cEnd), numCells = cE - cS, c;
59143e9753d6SMatthew G. Knepley 
591507218a29SMatthew G. Knepley     if (hasBdJac) {
591607218a29SMatthew G. Knepley       PetscCall(PetscArrayzero(elemMatNeg, cellChunkSize * totDim * totDim));
591707218a29SMatthew G. Knepley       PetscCall(PetscArrayzero(elemMatPos, cellChunkSize * totDim * totDim));
591807218a29SMatthew G. Knepley       PetscCall(PetscArrayzero(elemMatCoh, cellChunkSize * totDim * totDim));
591907218a29SMatthew G. Knepley     }
592007218a29SMatthew G. Knepley     if (hasBdPrec) {
592107218a29SMatthew G. Knepley       PetscCall(PetscArrayzero(elemMatNegP, cellChunkSize * totDim * totDim));
592207218a29SMatthew G. Knepley       PetscCall(PetscArrayzero(elemMatPosP, cellChunkSize * totDim * totDim));
592307218a29SMatthew G. Knepley       PetscCall(PetscArrayzero(elemMatCohP, cellChunkSize * totDim * totDim));
592407218a29SMatthew G. Knepley     }
59253e9753d6SMatthew G. Knepley     /* Get faces */
59263e9753d6SMatthew G. Knepley     for (c = cS; c < cE; ++c) {
59273e9753d6SMatthew G. Knepley       const PetscInt  cell = cells ? cells[c] : c;
59283e9753d6SMatthew G. Knepley       const PetscInt *cone;
59299566063dSJacob Faibussowitsch       PetscCall(DMPlexGetCone(plex, cell, &cone));
593007218a29SMatthew G. Knepley       faces[(c - cS) * 2 + 0] = cone[0];
593107218a29SMatthew G. Knepley       faces[(c - cS) * 2 + 1] = cone[1];
59323e9753d6SMatthew G. Knepley     }
593307218a29SMatthew G. Knepley     PetscCall(ISGeneralSetIndices(chunkIS, 2 * cellChunkSize, faces, PETSC_USE_POINTER));
59343e9753d6SMatthew G. Knepley     if (maxDegree <= 1) {
59359566063dSJacob Faibussowitsch       if (!affineQuad) PetscCall(DMFieldCreateDefaultQuadrature(coordField, chunkIS, &affineQuad));
59369566063dSJacob Faibussowitsch       if (affineQuad) PetscCall(DMSNESGetFEGeom(coordField, chunkIS, affineQuad, PETSC_TRUE, &affineGeom));
59373e9753d6SMatthew G. Knepley     } else {
59383e9753d6SMatthew G. Knepley       PetscInt f;
59393e9753d6SMatthew G. Knepley       for (f = 0; f < Nf; ++f) {
59409566063dSJacob Faibussowitsch         if (quads[f]) PetscCall(DMSNESGetFEGeom(coordField, chunkIS, quads[f], PETSC_TRUE, &geoms[f]));
59413e9753d6SMatthew G. Knepley       }
59423e9753d6SMatthew G. Knepley     }
59433e9753d6SMatthew G. Knepley 
59443e9753d6SMatthew G. Knepley     for (fieldI = 0; fieldI < Nf; ++fieldI) {
59453e9753d6SMatthew G. Knepley       PetscFE         feI;
59463e9753d6SMatthew G. Knepley       PetscFEGeom    *geom      = affineGeom ? affineGeom : geoms[fieldI];
59473e9753d6SMatthew G. Knepley       PetscFEGeom    *chunkGeom = NULL, *remGeom = NULL;
59483e9753d6SMatthew G. Knepley       PetscQuadrature quad = affineQuad ? affineQuad : quads[fieldI];
59493e9753d6SMatthew G. Knepley       PetscInt        numChunks, numBatches, batchSize, numBlocks, blockSize, Ne, Nr, offset, Nq, Nb;
59505fedec97SMatthew G. Knepley       PetscBool       isCohesiveField;
59513e9753d6SMatthew G. Knepley 
59529566063dSJacob Faibussowitsch       PetscCall(PetscDSGetDiscretization(ds, fieldI, (PetscObject *)&feI));
59533e9753d6SMatthew G. Knepley       if (!feI) continue;
59549566063dSJacob Faibussowitsch       PetscCall(PetscFEGetTileSizes(feI, NULL, &numBlocks, NULL, &numBatches));
59559566063dSJacob Faibussowitsch       PetscCall(PetscQuadratureGetData(quad, NULL, NULL, &Nq, NULL, NULL));
59569566063dSJacob Faibussowitsch       PetscCall(PetscFEGetDimension(feI, &Nb));
59573e9753d6SMatthew G. Knepley       blockSize = Nb;
59583e9753d6SMatthew G. Knepley       batchSize = numBlocks * blockSize;
59599566063dSJacob Faibussowitsch       PetscCall(PetscFESetTileSizes(feI, blockSize, numBlocks, batchSize, numBatches));
59603e9753d6SMatthew G. Knepley       numChunks = numCells / (numBatches * batchSize);
59613e9753d6SMatthew G. Knepley       Ne        = numChunks * numBatches * batchSize;
59623e9753d6SMatthew G. Knepley       Nr        = numCells % (numBatches * batchSize);
59633e9753d6SMatthew G. Knepley       offset    = numCells - Nr;
596407218a29SMatthew G. Knepley       PetscCall(PetscFEGeomGetChunk(geom, 0, offset * 2, &chunkGeom));
596507218a29SMatthew G. Knepley       PetscCall(PetscFEGeomGetChunk(geom, offset * 2, numCells * 2, &remGeom));
59669566063dSJacob Faibussowitsch       PetscCall(PetscDSGetCohesive(ds, fieldI, &isCohesiveField));
59673e9753d6SMatthew G. Knepley       for (fieldJ = 0; fieldJ < Nf; ++fieldJ) {
59683e9753d6SMatthew G. Knepley         PetscFE feJ;
59693e9753d6SMatthew G. Knepley 
59709566063dSJacob Faibussowitsch         PetscCall(PetscDSGetDiscretization(ds, fieldJ, (PetscObject *)&feJ));
59713e9753d6SMatthew G. Knepley         if (!feJ) continue;
5972148442b3SMatthew G. Knepley         key[0].field = fieldI * Nf + fieldJ;
5973148442b3SMatthew G. Knepley         key[1].field = fieldI * Nf + fieldJ;
59745fedec97SMatthew G. Knepley         key[2].field = fieldI * Nf + fieldJ;
5975148442b3SMatthew G. Knepley         if (hasBdJac) {
597607218a29SMatthew G. Knepley           PetscCall(PetscFEIntegrateHybridJacobian(ds, dsIn, PETSCFE_JACOBIAN, key[0], 0, Ne, chunkGeom, u, u_t, dsAux[0], a[0], t, X_tShift, elemMatNeg));
597707218a29SMatthew G. Knepley           PetscCall(PetscFEIntegrateHybridJacobian(ds, dsIn, PETSCFE_JACOBIAN, key[0], 0, Nr, remGeom, &u[offset * totDimIn], u_t ? &u_t[offset * totDimIn] : NULL, dsAux[0], &a[0][offset * totDimAux[0]], t, X_tShift, &elemMatNeg[offset * totDim * totDim]));
597807218a29SMatthew G. Knepley           PetscCall(PetscFEIntegrateHybridJacobian(ds, dsIn, PETSCFE_JACOBIAN, key[1], 1, Ne, chunkGeom, u, u_t, dsAux[1], a[1], t, X_tShift, elemMatPos));
597907218a29SMatthew G. Knepley           PetscCall(PetscFEIntegrateHybridJacobian(ds, dsIn, PETSCFE_JACOBIAN, key[1], 1, Nr, remGeom, &u[offset * totDimIn], u_t ? &u_t[offset * totDimIn] : NULL, dsAux[1], &a[1][offset * totDimAux[1]], t, X_tShift, &elemMatPos[offset * totDim * totDim]));
5980148442b3SMatthew G. Knepley         }
5981148442b3SMatthew G. Knepley         if (hasBdPrec) {
598207218a29SMatthew G. Knepley           PetscCall(PetscFEIntegrateHybridJacobian(ds, dsIn, PETSCFE_JACOBIAN_PRE, key[0], 0, Ne, chunkGeom, u, u_t, dsAux[0], a[0], t, X_tShift, elemMatNegP));
598307218a29SMatthew G. Knepley           PetscCall(PetscFEIntegrateHybridJacobian(ds, dsIn, PETSCFE_JACOBIAN_PRE, key[0], 0, Nr, remGeom, &u[offset * totDimIn], u_t ? &u_t[offset * totDimIn] : NULL, dsAux[0], &a[0][offset * totDimAux[0]], t, X_tShift, &elemMatNegP[offset * totDim * totDim]));
598407218a29SMatthew G. Knepley           PetscCall(PetscFEIntegrateHybridJacobian(ds, dsIn, PETSCFE_JACOBIAN_PRE, key[1], 1, Ne, chunkGeom, u, u_t, dsAux[1], a[1], t, X_tShift, elemMatPosP));
598507218a29SMatthew G. Knepley           PetscCall(PetscFEIntegrateHybridJacobian(ds, dsIn, PETSCFE_JACOBIAN_PRE, key[1], 1, Nr, remGeom, &u[offset * totDimIn], u_t ? &u_t[offset * totDimIn] : NULL, dsAux[1], &a[1][offset * totDimAux[1]], t, X_tShift, &elemMatPosP[offset * totDim * totDim]));
5986148442b3SMatthew G. Knepley         }
59875fedec97SMatthew G. Knepley         if (hasBdJac) {
598807218a29SMatthew G. Knepley           PetscCall(PetscFEIntegrateHybridJacobian(ds, dsIn, PETSCFE_JACOBIAN, key[2], 2, Ne, chunkGeom, u, u_t, dsAux[2], a[2], t, X_tShift, elemMatCoh));
598907218a29SMatthew G. Knepley           PetscCall(PetscFEIntegrateHybridJacobian(ds, dsIn, PETSCFE_JACOBIAN, key[2], 2, Nr, remGeom, &u[offset * totDimIn], u_t ? &u_t[offset * totDimIn] : NULL, dsAux[2], &a[2][offset * totDimAux[2]], t, X_tShift, &elemMatCoh[offset * totDim * totDim]));
5990148442b3SMatthew G. Knepley         }
59915fedec97SMatthew G. Knepley         if (hasBdPrec) {
599207218a29SMatthew G. Knepley           PetscCall(PetscFEIntegrateHybridJacobian(ds, dsIn, PETSCFE_JACOBIAN_PRE, key[2], 2, Ne, chunkGeom, u, u_t, dsAux[2], a[2], t, X_tShift, elemMatCohP));
599307218a29SMatthew G. Knepley           PetscCall(PetscFEIntegrateHybridJacobian(ds, dsIn, PETSCFE_JACOBIAN_PRE, key[2], 2, Nr, remGeom, &u[offset * totDimIn], u_t ? &u_t[offset * totDimIn] : NULL, dsAux[2], &a[2][offset * totDimAux[2]], t, X_tShift, &elemMatCohP[offset * totDim * totDim]));
59943e9753d6SMatthew G. Knepley         }
59953e9753d6SMatthew G. Knepley       }
59969566063dSJacob Faibussowitsch       PetscCall(PetscFEGeomRestoreChunk(geom, offset, numCells, &remGeom));
59979566063dSJacob Faibussowitsch       PetscCall(PetscFEGeomRestoreChunk(geom, 0, offset, &chunkGeom));
59983e9753d6SMatthew G. Knepley     }
59993e9753d6SMatthew G. Knepley     /* Insert values into matrix */
60003e9753d6SMatthew G. Knepley     for (c = cS; c < cE; ++c) {
60013e9753d6SMatthew G. Knepley       const PetscInt cell = cells ? cells[c] : c;
600207218a29SMatthew G. Knepley       const PetscInt cind = c - cS, coff = cind * totDim * totDim;
600307218a29SMatthew G. Knepley       PetscInt       i, j;
60043e9753d6SMatthew G. Knepley 
600507218a29SMatthew G. Knepley       /* Scale element values */
600607218a29SMatthew G. Knepley       if (locS[0]) {
60073e2b0218SMatthew G. Knepley         PetscInt  Nb, soff = cind * totDimScale[0], off = 0;
600807218a29SMatthew G. Knepley         PetscBool cohesive;
600907218a29SMatthew G. Knepley 
601007218a29SMatthew G. Knepley         for (fieldI = 0; fieldI < Nf; ++fieldI) {
601107218a29SMatthew G. Knepley           PetscCall(PetscDSGetFieldSize(ds, fieldI, &Nb));
601207218a29SMatthew G. Knepley           PetscCall(PetscDSGetCohesive(ds, fieldI, &cohesive));
601307218a29SMatthew G. Knepley 
601407218a29SMatthew G. Knepley           if (fieldI == key[2].field) {
601507218a29SMatthew G. Knepley             PetscCheck(cohesive, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Scaling should not happen for face fields");
60168bf0a22dSMatthew G. Knepley             for (i = 0; i < Nb; ++i) {
601707218a29SMatthew G. Knepley               for (j = 0; j < totDim; ++j) elemMatCoh[coff + (off + i) * totDim + j] += s[0][soff + i] * elemMatNeg[coff + (off + i) * totDim + j] + s[1][soff + i] * elemMatPos[coff + (off + i) * totDim + j];
60188bf0a22dSMatthew G. Knepley               if (hasBdPrec)
60198bf0a22dSMatthew G. Knepley                 for (j = 0; j < totDim; ++j) elemMatCohP[coff + (off + i) * totDim + j] += s[0][soff + i] * elemMatNegP[coff + (off + i) * totDim + j] + s[1][soff + i] * elemMatPosP[coff + (off + i) * totDim + j];
60208bf0a22dSMatthew G. Knepley             }
602107218a29SMatthew G. Knepley             off += Nb;
602207218a29SMatthew G. Knepley           } else {
602307218a29SMatthew G. Knepley             const PetscInt N = cohesive ? Nb : Nb * 2;
602407218a29SMatthew G. Knepley 
60258bf0a22dSMatthew G. Knepley             for (i = 0; i < N; ++i) {
602607218a29SMatthew G. Knepley               for (j = 0; j < totDim; ++j) elemMatCoh[coff + (off + i) * totDim + j] += elemMatNeg[coff + (off + i) * totDim + j] + elemMatPos[coff + (off + i) * totDim + j];
60278bf0a22dSMatthew G. Knepley               if (hasBdPrec)
60288bf0a22dSMatthew G. Knepley                 for (j = 0; j < totDim; ++j) elemMatCohP[coff + (off + i) * totDim + j] += elemMatNegP[coff + (off + i) * totDim + j] + elemMatPosP[coff + (off + i) * totDim + j];
60298bf0a22dSMatthew G. Knepley             }
603007218a29SMatthew G. Knepley             off += N;
603107218a29SMatthew G. Knepley           }
603207218a29SMatthew G. Knepley         }
603307218a29SMatthew G. Knepley       } else {
603407218a29SMatthew G. Knepley         for (i = 0; i < totDim * totDim; ++i) elemMatCoh[coff + i] += elemMatNeg[coff + i] + elemMatPos[coff + i];
60358bf0a22dSMatthew G. Knepley         if (hasBdPrec)
60368bf0a22dSMatthew G. Knepley           for (i = 0; i < totDim * totDim; ++i) elemMatCohP[coff + i] += elemMatNegP[coff + i] + elemMatPosP[coff + i];
603707218a29SMatthew G. Knepley       }
60383e9753d6SMatthew G. Knepley       if (hasBdPrec) {
60393e9753d6SMatthew G. Knepley         if (hasBdJac) {
604007218a29SMatthew G. Knepley           if (mesh->printFEM > 1) PetscCall(DMPrintCellMatrix(cell, name, totDim, totDim, &elemMatCoh[cind * totDim * totDim]));
604107218a29SMatthew G. Knepley           PetscCall(DMPlexMatSetClosure(plex, section, globalSection, Jac, cell, &elemMatCoh[cind * totDim * totDim], ADD_VALUES));
60423e9753d6SMatthew G. Knepley         }
604307218a29SMatthew G. Knepley         if (mesh->printFEM > 1) PetscCall(DMPrintCellMatrix(cell, name, totDim, totDim, &elemMatCohP[cind * totDim * totDim]));
604407218a29SMatthew G. Knepley         PetscCall(DMPlexMatSetClosure(plex, section, globalSection, JacP, cell, &elemMatCohP[cind * totDim * totDim], ADD_VALUES));
60453e9753d6SMatthew G. Knepley       } else if (hasBdJac) {
604607218a29SMatthew G. Knepley         if (mesh->printFEM > 1) PetscCall(DMPrintCellMatrix(cell, name, totDim, totDim, &elemMatCoh[cind * totDim * totDim]));
604707218a29SMatthew G. Knepley         PetscCall(DMPlexMatSetClosure(plex, section, globalSection, JacP, cell, &elemMatCoh[cind * totDim * totDim], ADD_VALUES));
60483e9753d6SMatthew G. Knepley       }
60493e9753d6SMatthew G. Knepley     }
60503e9753d6SMatthew G. Knepley   }
60519566063dSJacob Faibussowitsch   PetscCall(DMPlexRestoreCellFields(dm, cellIS, locX, locX_t, locA[2], &u, &u_t, &a[2]));
605207218a29SMatthew G. Knepley   PetscCall(DMPlexRestoreHybridFields(dm, dmAux, dsAux, cellIS, locA, PETSC_TRUE, a));
605307218a29SMatthew G. Knepley   PetscCall(DMRestoreWorkArray(dm, hasBdJac ? cellChunkSize * totDim * totDim : 0, MPIU_SCALAR, &elemMatNeg));
605407218a29SMatthew G. Knepley   PetscCall(DMRestoreWorkArray(dm, hasBdJac ? cellChunkSize * totDim * totDim : 0, MPIU_SCALAR, &elemMatPos));
605507218a29SMatthew G. Knepley   PetscCall(DMRestoreWorkArray(dm, hasBdJac ? cellChunkSize * totDim * totDim : 0, MPIU_SCALAR, &elemMatCoh));
605607218a29SMatthew G. Knepley   PetscCall(DMRestoreWorkArray(dm, hasBdPrec ? cellChunkSize * totDim * totDim : 0, MPIU_SCALAR, &elemMatNegP));
605707218a29SMatthew G. Knepley   PetscCall(DMRestoreWorkArray(dm, hasBdPrec ? cellChunkSize * totDim * totDim : 0, MPIU_SCALAR, &elemMatPosP));
605807218a29SMatthew G. Knepley   PetscCall(DMRestoreWorkArray(dm, hasBdPrec ? cellChunkSize * totDim * totDim : 0, MPIU_SCALAR, &elemMatCohP));
60599566063dSJacob Faibussowitsch   PetscCall(PetscFree(faces));
60609566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&chunkIS));
60619566063dSJacob Faibussowitsch   PetscCall(ISRestorePointRange(cellIS, &cStart, &cEnd, &cells));
60623e9753d6SMatthew G. Knepley   if (maxDegree <= 1) {
60639566063dSJacob Faibussowitsch     PetscCall(DMSNESRestoreFEGeom(coordField, cellIS, affineQuad, PETSC_FALSE, &affineGeom));
60649566063dSJacob Faibussowitsch     PetscCall(PetscQuadratureDestroy(&affineQuad));
60653e9753d6SMatthew G. Knepley   } else {
60663e9753d6SMatthew G. Knepley     PetscInt f;
60673e9753d6SMatthew G. Knepley     for (f = 0; f < Nf; ++f) {
60689566063dSJacob Faibussowitsch       if (geoms) PetscCall(DMSNESRestoreFEGeom(coordField, cellIS, quads[f], PETSC_FALSE, &geoms[f]));
60699566063dSJacob Faibussowitsch       if (quads) PetscCall(PetscQuadratureDestroy(&quads[f]));
60703e9753d6SMatthew G. Knepley     }
60719566063dSJacob Faibussowitsch     PetscCall(PetscFree2(quads, geoms));
60723e9753d6SMatthew G. Knepley   }
60739566063dSJacob Faibussowitsch   if (dmAux[2]) PetscCall(DMDestroy(&plexA));
60749566063dSJacob Faibussowitsch   PetscCall(DMDestroy(&plex));
60759566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(DMPLEX_JacobianFEM, dm, 0, 0, 0));
60763ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
60773e9753d6SMatthew G. Knepley }
60788e3a2eefSMatthew G. Knepley 
60798e3a2eefSMatthew G. Knepley /*
60808e3a2eefSMatthew G. Knepley   DMPlexComputeJacobian_Action_Internal - Form the local portion of the Jacobian action Z = J(X) Y at the local solution X using pointwise functions specified by the user.
60818e3a2eefSMatthew G. Knepley 
60828e3a2eefSMatthew G. Knepley   Input Parameters:
60838e3a2eefSMatthew G. Knepley + dm     - The mesh
60848e3a2eefSMatthew G. Knepley . key    - The PetscWeakFormKey indcating where integration should happen
608506ad1575SMatthew G. Knepley . cellIS - The cells to integrate over
60868e3a2eefSMatthew G. Knepley . t      - The time
6087145b44c9SPierre Jolivet . X_tShift - The multiplier for the Jacobian with respect to X_t
60888e3a2eefSMatthew G. Knepley . X      - Local solution vector
60898e3a2eefSMatthew G. Knepley . X_t    - Time-derivative of the local solution vector
60908e3a2eefSMatthew G. Knepley . Y      - Local input vector
609106ad1575SMatthew G. Knepley - user   - the user context
60928e3a2eefSMatthew G. Knepley 
60938e3a2eefSMatthew G. Knepley   Output Parameter:
60948e3a2eefSMatthew G. Knepley . Z - Local output vector
60958e3a2eefSMatthew G. Knepley 
60968e3a2eefSMatthew G. Knepley   Note:
60978e3a2eefSMatthew G. Knepley   We form the residual one batch of elements at a time. This allows us to offload work onto an accelerator,
60988e3a2eefSMatthew G. Knepley   like a GPU, or vectorize on a multicore machine.
60998e3a2eefSMatthew G. Knepley */
6100d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeJacobian_Action_Internal(DM dm, PetscFormKey key, IS cellIS, PetscReal t, PetscReal X_tShift, Vec X, Vec X_t, Vec Y, Vec Z, void *user)
6101d71ae5a4SJacob Faibussowitsch {
61028e3a2eefSMatthew G. Knepley   DM_Plex        *mesh  = (DM_Plex *)dm->data;
61038e3a2eefSMatthew G. Knepley   const char     *name  = "Jacobian";
61048e3a2eefSMatthew G. Knepley   DM              dmAux = NULL, plex, plexAux = NULL;
61058e3a2eefSMatthew G. Knepley   DMEnclosureType encAux;
61068e3a2eefSMatthew G. Knepley   Vec             A;
61078e3a2eefSMatthew G. Knepley   DMField         coordField;
61088e3a2eefSMatthew G. Knepley   PetscDS         prob, probAux = NULL;
61098e3a2eefSMatthew G. Knepley   PetscQuadrature quad;
61108e3a2eefSMatthew G. Knepley   PetscSection    section, globalSection, sectionAux;
61118e3a2eefSMatthew G. Knepley   PetscScalar    *elemMat, *elemMatD, *u, *u_t, *a = NULL, *y, *z;
61128e3a2eefSMatthew G. Knepley   const PetscInt *cells;
61138e3a2eefSMatthew G. Knepley   PetscInt        Nf, fieldI, fieldJ;
61148e3a2eefSMatthew G. Knepley   PetscInt        totDim, totDimAux = 0, cStart, cEnd, numCells, c;
61158e3a2eefSMatthew G. Knepley   PetscBool       hasDyn;
61168e3a2eefSMatthew G. Knepley 
61178e3a2eefSMatthew G. Knepley   PetscFunctionBegin;
611821d77094SMatthew G. Knepley   if (!cellIS) PetscFunctionReturn(PETSC_SUCCESS);
61199566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(DMPLEX_JacobianFEM, dm, 0, 0, 0));
61209566063dSJacob Faibussowitsch   PetscCall(DMConvert(dm, DMPLEX, &plex));
61219566063dSJacob Faibussowitsch   PetscCall(ISGetLocalSize(cellIS, &numCells));
61229566063dSJacob Faibussowitsch   PetscCall(ISGetPointRange(cellIS, &cStart, &cEnd, &cells));
61239566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dm, &section));
61249566063dSJacob Faibussowitsch   PetscCall(DMGetGlobalSection(dm, &globalSection));
612507218a29SMatthew G. Knepley   PetscCall(DMGetCellDS(dm, cells ? cells[cStart] : cStart, &prob, NULL));
61269566063dSJacob Faibussowitsch   PetscCall(PetscDSGetNumFields(prob, &Nf));
61279566063dSJacob Faibussowitsch   PetscCall(PetscDSGetTotalDimension(prob, &totDim));
61289566063dSJacob Faibussowitsch   PetscCall(PetscDSHasDynamicJacobian(prob, &hasDyn));
61298e3a2eefSMatthew G. Knepley   hasDyn = hasDyn && (X_tShift != 0.0) ? PETSC_TRUE : PETSC_FALSE;
61309566063dSJacob Faibussowitsch   PetscCall(DMGetAuxiliaryVec(dm, key.label, key.value, key.part, &A));
61318e3a2eefSMatthew G. Knepley   if (A) {
61329566063dSJacob Faibussowitsch     PetscCall(VecGetDM(A, &dmAux));
61339566063dSJacob Faibussowitsch     PetscCall(DMGetEnclosureRelation(dmAux, dm, &encAux));
61349566063dSJacob Faibussowitsch     PetscCall(DMConvert(dmAux, DMPLEX, &plexAux));
61359566063dSJacob Faibussowitsch     PetscCall(DMGetLocalSection(plexAux, &sectionAux));
61369566063dSJacob Faibussowitsch     PetscCall(DMGetDS(dmAux, &probAux));
61379566063dSJacob Faibussowitsch     PetscCall(PetscDSGetTotalDimension(probAux, &totDimAux));
61388e3a2eefSMatthew G. Knepley   }
61399566063dSJacob Faibussowitsch   PetscCall(VecSet(Z, 0.0));
61409566063dSJacob Faibussowitsch   PetscCall(PetscMalloc6(numCells * totDim, &u, X_t ? numCells * totDim : 0, &u_t, numCells * totDim * totDim, &elemMat, hasDyn ? numCells * totDim * totDim : 0, &elemMatD, numCells * totDim, &y, totDim, &z));
61419566063dSJacob Faibussowitsch   if (dmAux) PetscCall(PetscMalloc1(numCells * totDimAux, &a));
61429566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateField(dm, &coordField));
61438e3a2eefSMatthew G. Knepley   for (c = cStart; c < cEnd; ++c) {
61448e3a2eefSMatthew G. Knepley     const PetscInt cell = cells ? cells[c] : c;
61458e3a2eefSMatthew G. Knepley     const PetscInt cind = c - cStart;
61468e3a2eefSMatthew G. Knepley     PetscScalar   *x = NULL, *x_t = NULL;
61478e3a2eefSMatthew G. Knepley     PetscInt       i;
61488e3a2eefSMatthew G. Knepley 
61499566063dSJacob Faibussowitsch     PetscCall(DMPlexVecGetClosure(plex, section, X, cell, NULL, &x));
61508e3a2eefSMatthew G. Knepley     for (i = 0; i < totDim; ++i) u[cind * totDim + i] = x[i];
61519566063dSJacob Faibussowitsch     PetscCall(DMPlexVecRestoreClosure(plex, section, X, cell, NULL, &x));
61528e3a2eefSMatthew G. Knepley     if (X_t) {
61539566063dSJacob Faibussowitsch       PetscCall(DMPlexVecGetClosure(plex, section, X_t, cell, NULL, &x_t));
61548e3a2eefSMatthew G. Knepley       for (i = 0; i < totDim; ++i) u_t[cind * totDim + i] = x_t[i];
61559566063dSJacob Faibussowitsch       PetscCall(DMPlexVecRestoreClosure(plex, section, X_t, cell, NULL, &x_t));
61568e3a2eefSMatthew G. Knepley     }
61578e3a2eefSMatthew G. Knepley     if (dmAux) {
61588e3a2eefSMatthew G. Knepley       PetscInt subcell;
61599566063dSJacob Faibussowitsch       PetscCall(DMGetEnclosurePoint(dmAux, dm, encAux, cell, &subcell));
61609566063dSJacob Faibussowitsch       PetscCall(DMPlexVecGetClosure(plexAux, sectionAux, A, subcell, NULL, &x));
61618e3a2eefSMatthew G. Knepley       for (i = 0; i < totDimAux; ++i) a[cind * totDimAux + i] = x[i];
61629566063dSJacob Faibussowitsch       PetscCall(DMPlexVecRestoreClosure(plexAux, sectionAux, A, subcell, NULL, &x));
61638e3a2eefSMatthew G. Knepley     }
61649566063dSJacob Faibussowitsch     PetscCall(DMPlexVecGetClosure(plex, section, Y, cell, NULL, &x));
61658e3a2eefSMatthew G. Knepley     for (i = 0; i < totDim; ++i) y[cind * totDim + i] = x[i];
61669566063dSJacob Faibussowitsch     PetscCall(DMPlexVecRestoreClosure(plex, section, Y, cell, NULL, &x));
61678e3a2eefSMatthew G. Knepley   }
61689566063dSJacob Faibussowitsch   PetscCall(PetscArrayzero(elemMat, numCells * totDim * totDim));
61699566063dSJacob Faibussowitsch   if (hasDyn) PetscCall(PetscArrayzero(elemMatD, numCells * totDim * totDim));
61708e3a2eefSMatthew G. Knepley   for (fieldI = 0; fieldI < Nf; ++fieldI) {
61718e3a2eefSMatthew G. Knepley     PetscFE  fe;
61728e3a2eefSMatthew G. Knepley     PetscInt Nb;
61738e3a2eefSMatthew G. Knepley     /* Conforming batches */
61748e3a2eefSMatthew G. Knepley     PetscInt numChunks, numBatches, numBlocks, Ne, blockSize, batchSize;
61758e3a2eefSMatthew G. Knepley     /* Remainder */
61768e3a2eefSMatthew G. Knepley     PetscInt        Nr, offset, Nq;
61778e3a2eefSMatthew G. Knepley     PetscQuadrature qGeom = NULL;
61788e3a2eefSMatthew G. Knepley     PetscInt        maxDegree;
61798e3a2eefSMatthew G. Knepley     PetscFEGeom    *cgeomFEM, *chunkGeom = NULL, *remGeom = NULL;
61808e3a2eefSMatthew G. Knepley 
61819566063dSJacob Faibussowitsch     PetscCall(PetscDSGetDiscretization(prob, fieldI, (PetscObject *)&fe));
61829566063dSJacob Faibussowitsch     PetscCall(PetscFEGetQuadrature(fe, &quad));
61839566063dSJacob Faibussowitsch     PetscCall(PetscFEGetDimension(fe, &Nb));
61849566063dSJacob Faibussowitsch     PetscCall(PetscFEGetTileSizes(fe, NULL, &numBlocks, NULL, &numBatches));
61859566063dSJacob Faibussowitsch     PetscCall(DMFieldGetDegree(coordField, cellIS, NULL, &maxDegree));
61869566063dSJacob Faibussowitsch     if (maxDegree <= 1) PetscCall(DMFieldCreateDefaultQuadrature(coordField, cellIS, &qGeom));
61878e3a2eefSMatthew G. Knepley     if (!qGeom) {
61889566063dSJacob Faibussowitsch       PetscCall(PetscFEGetQuadrature(fe, &qGeom));
61899566063dSJacob Faibussowitsch       PetscCall(PetscObjectReference((PetscObject)qGeom));
61908e3a2eefSMatthew G. Knepley     }
61919566063dSJacob Faibussowitsch     PetscCall(PetscQuadratureGetData(qGeom, NULL, NULL, &Nq, NULL, NULL));
61929566063dSJacob Faibussowitsch     PetscCall(DMSNESGetFEGeom(coordField, cellIS, qGeom, PETSC_FALSE, &cgeomFEM));
61938e3a2eefSMatthew G. Knepley     blockSize = Nb;
61948e3a2eefSMatthew G. Knepley     batchSize = numBlocks * blockSize;
61959566063dSJacob Faibussowitsch     PetscCall(PetscFESetTileSizes(fe, blockSize, numBlocks, batchSize, numBatches));
61968e3a2eefSMatthew G. Knepley     numChunks = numCells / (numBatches * batchSize);
61978e3a2eefSMatthew G. Knepley     Ne        = numChunks * numBatches * batchSize;
61988e3a2eefSMatthew G. Knepley     Nr        = numCells % (numBatches * batchSize);
61998e3a2eefSMatthew G. Knepley     offset    = numCells - Nr;
62009566063dSJacob Faibussowitsch     PetscCall(PetscFEGeomGetChunk(cgeomFEM, 0, offset, &chunkGeom));
62019566063dSJacob Faibussowitsch     PetscCall(PetscFEGeomGetChunk(cgeomFEM, offset, numCells, &remGeom));
62028e3a2eefSMatthew G. Knepley     for (fieldJ = 0; fieldJ < Nf; ++fieldJ) {
62038e3a2eefSMatthew G. Knepley       key.field = fieldI * Nf + fieldJ;
62049566063dSJacob Faibussowitsch       PetscCall(PetscFEIntegrateJacobian(prob, PETSCFE_JACOBIAN, key, Ne, chunkGeom, u, u_t, probAux, a, t, X_tShift, elemMat));
62059566063dSJacob Faibussowitsch       PetscCall(PetscFEIntegrateJacobian(prob, PETSCFE_JACOBIAN, key, Nr, remGeom, &u[offset * totDim], u_t ? &u_t[offset * totDim] : NULL, probAux, &a[offset * totDimAux], t, X_tShift, &elemMat[offset * totDim * totDim]));
62068e3a2eefSMatthew G. Knepley       if (hasDyn) {
62079566063dSJacob Faibussowitsch         PetscCall(PetscFEIntegrateJacobian(prob, PETSCFE_JACOBIAN_DYN, key, Ne, chunkGeom, u, u_t, probAux, a, t, X_tShift, elemMatD));
62089566063dSJacob Faibussowitsch         PetscCall(PetscFEIntegrateJacobian(prob, PETSCFE_JACOBIAN_DYN, key, Nr, remGeom, &u[offset * totDim], u_t ? &u_t[offset * totDim] : NULL, probAux, &a[offset * totDimAux], t, X_tShift, &elemMatD[offset * totDim * totDim]));
62098e3a2eefSMatthew G. Knepley       }
62108e3a2eefSMatthew G. Knepley     }
62119566063dSJacob Faibussowitsch     PetscCall(PetscFEGeomRestoreChunk(cgeomFEM, offset, numCells, &remGeom));
62129566063dSJacob Faibussowitsch     PetscCall(PetscFEGeomRestoreChunk(cgeomFEM, 0, offset, &chunkGeom));
62139566063dSJacob Faibussowitsch     PetscCall(DMSNESRestoreFEGeom(coordField, cellIS, qGeom, PETSC_FALSE, &cgeomFEM));
62149566063dSJacob Faibussowitsch     PetscCall(PetscQuadratureDestroy(&qGeom));
62158e3a2eefSMatthew G. Knepley   }
62168e3a2eefSMatthew G. Knepley   if (hasDyn) {
62178e3a2eefSMatthew G. Knepley     for (c = 0; c < numCells * totDim * totDim; ++c) elemMat[c] += X_tShift * elemMatD[c];
62188e3a2eefSMatthew G. Knepley   }
62198e3a2eefSMatthew G. Knepley   for (c = cStart; c < cEnd; ++c) {
62208e3a2eefSMatthew G. Knepley     const PetscInt     cell = cells ? cells[c] : c;
62218e3a2eefSMatthew G. Knepley     const PetscInt     cind = c - cStart;
62228e3a2eefSMatthew G. Knepley     const PetscBLASInt M = totDim, one = 1;
62238e3a2eefSMatthew G. Knepley     const PetscScalar  a = 1.0, b = 0.0;
62248e3a2eefSMatthew G. Knepley 
6225792fecdfSBarry Smith     PetscCallBLAS("BLASgemv", BLASgemv_("N", &M, &M, &a, &elemMat[cind * totDim * totDim], &M, &y[cind * totDim], &one, &b, z, &one));
62268e3a2eefSMatthew G. Knepley     if (mesh->printFEM > 1) {
62279566063dSJacob Faibussowitsch       PetscCall(DMPrintCellMatrix(c, name, totDim, totDim, &elemMat[cind * totDim * totDim]));
62289566063dSJacob Faibussowitsch       PetscCall(DMPrintCellVector(c, "Y", totDim, &y[cind * totDim]));
62299566063dSJacob Faibussowitsch       PetscCall(DMPrintCellVector(c, "Z", totDim, z));
62308e3a2eefSMatthew G. Knepley     }
62319566063dSJacob Faibussowitsch     PetscCall(DMPlexVecSetClosure(dm, section, Z, cell, z, ADD_VALUES));
62328e3a2eefSMatthew G. Knepley   }
62339566063dSJacob Faibussowitsch   PetscCall(PetscFree6(u, u_t, elemMat, elemMatD, y, z));
62348e3a2eefSMatthew G. Knepley   if (mesh->printFEM) {
62359566063dSJacob Faibussowitsch     PetscCall(PetscPrintf(PetscObjectComm((PetscObject)Z), "Z:\n"));
62369566063dSJacob Faibussowitsch     PetscCall(VecView(Z, NULL));
62378e3a2eefSMatthew G. Knepley   }
62381059d808SMatthew G. Knepley   PetscCall(ISRestorePointRange(cellIS, &cStart, &cEnd, &cells));
62399566063dSJacob Faibussowitsch   PetscCall(PetscFree(a));
62409566063dSJacob Faibussowitsch   PetscCall(DMDestroy(&plexAux));
62419566063dSJacob Faibussowitsch   PetscCall(DMDestroy(&plex));
62429566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(DMPLEX_JacobianFEM, dm, 0, 0, 0));
62433ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
62448e3a2eefSMatthew G. Knepley }
6245