xref: /petsc/src/dm/impls/plex/plexfem.c (revision b278463c75a5b8ac875b14677d038afbbdf00aab)
1af0996ceSBarry Smith #include <petsc/private/dmpleximpl.h>   /*I      "petscdmplex.h"   I*/
2da97024aSMatthew G. Knepley #include <petscsf.h>
3cb1e1211SMatthew G Knepley 
4af0996ceSBarry Smith #include <petsc/private/petscfeimpl.h>
5af0996ceSBarry Smith #include <petsc/private/petscfvimpl.h>
6a0845e3aSMatthew G. Knepley 
746fa42a0SMatthew G. Knepley /*@
846fa42a0SMatthew G. Knepley   DMPlexGetScale - Get the scale for the specified fundamental unit
946fa42a0SMatthew G. Knepley 
1046fa42a0SMatthew G. Knepley   Not collective
1146fa42a0SMatthew G. Knepley 
1246fa42a0SMatthew G. Knepley   Input Arguments:
1346fa42a0SMatthew G. Knepley + dm   - the DM
1446fa42a0SMatthew G. Knepley - unit - The SI unit
1546fa42a0SMatthew G. Knepley 
1646fa42a0SMatthew G. Knepley   Output Argument:
1746fa42a0SMatthew G. Knepley . scale - The value used to scale all quantities with this unit
1846fa42a0SMatthew G. Knepley 
1946fa42a0SMatthew G. Knepley   Level: advanced
2046fa42a0SMatthew G. Knepley 
2146fa42a0SMatthew G. Knepley .seealso: DMPlexSetScale(), PetscUnit
2246fa42a0SMatthew G. Knepley @*/
23cb1e1211SMatthew G Knepley PetscErrorCode DMPlexGetScale(DM dm, PetscUnit unit, PetscReal *scale)
24cb1e1211SMatthew G Knepley {
25cb1e1211SMatthew G Knepley   DM_Plex *mesh = (DM_Plex*) dm->data;
26cb1e1211SMatthew G Knepley 
27cb1e1211SMatthew G Knepley   PetscFunctionBegin;
28cb1e1211SMatthew G Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
29cb1e1211SMatthew G Knepley   PetscValidPointer(scale, 3);
30cb1e1211SMatthew G Knepley   *scale = mesh->scale[unit];
31cb1e1211SMatthew G Knepley   PetscFunctionReturn(0);
32cb1e1211SMatthew G Knepley }
33cb1e1211SMatthew G Knepley 
3446fa42a0SMatthew G. Knepley /*@
3546fa42a0SMatthew G. Knepley   DMPlexSetScale - Set the scale for the specified fundamental unit
3646fa42a0SMatthew G. Knepley 
3746fa42a0SMatthew G. Knepley   Not collective
3846fa42a0SMatthew G. Knepley 
3946fa42a0SMatthew G. Knepley   Input Arguments:
4046fa42a0SMatthew G. Knepley + dm   - the DM
4146fa42a0SMatthew G. Knepley . unit - The SI unit
4246fa42a0SMatthew G. Knepley - scale - The value used to scale all quantities with this unit
4346fa42a0SMatthew G. Knepley 
4446fa42a0SMatthew G. Knepley   Level: advanced
4546fa42a0SMatthew G. Knepley 
4646fa42a0SMatthew G. Knepley .seealso: DMPlexGetScale(), PetscUnit
4746fa42a0SMatthew G. Knepley @*/
48cb1e1211SMatthew G Knepley PetscErrorCode DMPlexSetScale(DM dm, PetscUnit unit, PetscReal scale)
49cb1e1211SMatthew G Knepley {
50cb1e1211SMatthew G Knepley   DM_Plex *mesh = (DM_Plex*) dm->data;
51cb1e1211SMatthew G Knepley 
52cb1e1211SMatthew G Knepley   PetscFunctionBegin;
53cb1e1211SMatthew G Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
54cb1e1211SMatthew G Knepley   mesh->scale[unit] = scale;
55cb1e1211SMatthew G Knepley   PetscFunctionReturn(0);
56cb1e1211SMatthew G Knepley }
57cb1e1211SMatthew G Knepley 
58cb1e1211SMatthew G Knepley PETSC_STATIC_INLINE PetscInt epsilon(PetscInt i, PetscInt j, PetscInt k)
59cb1e1211SMatthew G Knepley {
60cb1e1211SMatthew G Knepley   switch (i) {
61cb1e1211SMatthew G Knepley   case 0:
62cb1e1211SMatthew G Knepley     switch (j) {
63cb1e1211SMatthew G Knepley     case 0: return 0;
64cb1e1211SMatthew G Knepley     case 1:
65cb1e1211SMatthew G Knepley       switch (k) {
66cb1e1211SMatthew G Knepley       case 0: return 0;
67cb1e1211SMatthew G Knepley       case 1: return 0;
68cb1e1211SMatthew G Knepley       case 2: return 1;
69cb1e1211SMatthew G Knepley       }
70cb1e1211SMatthew G Knepley     case 2:
71cb1e1211SMatthew G Knepley       switch (k) {
72cb1e1211SMatthew G Knepley       case 0: return 0;
73cb1e1211SMatthew G Knepley       case 1: return -1;
74cb1e1211SMatthew G Knepley       case 2: return 0;
75cb1e1211SMatthew G Knepley       }
76cb1e1211SMatthew G Knepley     }
77cb1e1211SMatthew G Knepley   case 1:
78cb1e1211SMatthew G Knepley     switch (j) {
79cb1e1211SMatthew G Knepley     case 0:
80cb1e1211SMatthew G Knepley       switch (k) {
81cb1e1211SMatthew G Knepley       case 0: return 0;
82cb1e1211SMatthew G Knepley       case 1: return 0;
83cb1e1211SMatthew G Knepley       case 2: return -1;
84cb1e1211SMatthew G Knepley       }
85cb1e1211SMatthew G Knepley     case 1: return 0;
86cb1e1211SMatthew G Knepley     case 2:
87cb1e1211SMatthew G Knepley       switch (k) {
88cb1e1211SMatthew G Knepley       case 0: return 1;
89cb1e1211SMatthew G Knepley       case 1: return 0;
90cb1e1211SMatthew G Knepley       case 2: return 0;
91cb1e1211SMatthew G Knepley       }
92cb1e1211SMatthew G Knepley     }
93cb1e1211SMatthew G Knepley   case 2:
94cb1e1211SMatthew G Knepley     switch (j) {
95cb1e1211SMatthew G Knepley     case 0:
96cb1e1211SMatthew G Knepley       switch (k) {
97cb1e1211SMatthew G Knepley       case 0: return 0;
98cb1e1211SMatthew G Knepley       case 1: return 1;
99cb1e1211SMatthew G Knepley       case 2: return 0;
100cb1e1211SMatthew G Knepley       }
101cb1e1211SMatthew G Knepley     case 1:
102cb1e1211SMatthew G Knepley       switch (k) {
103cb1e1211SMatthew G Knepley       case 0: return -1;
104cb1e1211SMatthew G Knepley       case 1: return 0;
105cb1e1211SMatthew G Knepley       case 2: return 0;
106cb1e1211SMatthew G Knepley       }
107cb1e1211SMatthew G Knepley     case 2: return 0;
108cb1e1211SMatthew G Knepley     }
109cb1e1211SMatthew G Knepley   }
110cb1e1211SMatthew G Knepley   return 0;
111cb1e1211SMatthew G Knepley }
112cb1e1211SMatthew G Knepley 
113d1828a1cSMatthew G. Knepley static PetscErrorCode DMPlexProjectRigidBody_Private(PetscInt dim, PetscReal t, const PetscReal X[], PetscInt Nf, PetscScalar *mode, void *ctx)
114026175e5SToby Isaac {
115026175e5SToby Isaac   PetscInt *ctxInt  = (PetscInt *) ctx;
116ad917190SMatthew G. Knepley   PetscInt  dim2    = ctxInt[0];
117026175e5SToby Isaac   PetscInt  d       = ctxInt[1];
118026175e5SToby Isaac   PetscInt  i, j, k = dim > 2 ? d - dim : d;
119026175e5SToby Isaac 
120ad917190SMatthew G. Knepley   PetscFunctionBegin;
121ad917190SMatthew G. Knepley   if (dim != dim2) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Input dimension %d does not match context dimension %d", dim, dim2);
122026175e5SToby Isaac   for (i = 0; i < dim; i++) mode[i] = 0.;
123026175e5SToby Isaac   if (d < dim) {
124026175e5SToby Isaac     mode[d] = 1.;
125ad917190SMatthew G. Knepley   } else {
126026175e5SToby Isaac     for (i = 0; i < dim; i++) {
127026175e5SToby Isaac       for (j = 0; j < dim; j++) {
128026175e5SToby Isaac         mode[j] += epsilon(i, j, k)*X[i];
129026175e5SToby Isaac       }
130026175e5SToby Isaac     }
131026175e5SToby Isaac   }
132ad917190SMatthew G. Knepley   PetscFunctionReturn(0);
133026175e5SToby Isaac }
134026175e5SToby Isaac 
135cb1e1211SMatthew G Knepley /*@C
136026175e5SToby Isaac   DMPlexCreateRigidBody - for the default global section, create rigid body modes from coordinates
137cb1e1211SMatthew G Knepley 
138cb1e1211SMatthew G Knepley   Collective on DM
139cb1e1211SMatthew G Knepley 
140cb1e1211SMatthew G Knepley   Input Arguments:
141026175e5SToby Isaac . dm - the DM
142cb1e1211SMatthew G Knepley 
143cb1e1211SMatthew G Knepley   Output Argument:
144cb1e1211SMatthew G Knepley . sp - the null space
145cb1e1211SMatthew G Knepley 
146cb1e1211SMatthew G Knepley   Note: This is necessary to take account of Dirichlet conditions on the displacements
147cb1e1211SMatthew G Knepley 
148cb1e1211SMatthew G Knepley   Level: advanced
149cb1e1211SMatthew G Knepley 
150cb1e1211SMatthew G Knepley .seealso: MatNullSpaceCreate()
151cb1e1211SMatthew G Knepley @*/
152026175e5SToby Isaac PetscErrorCode DMPlexCreateRigidBody(DM dm, MatNullSpace *sp)
153cb1e1211SMatthew G Knepley {
154cb1e1211SMatthew G Knepley   MPI_Comm       comm;
155026175e5SToby Isaac   Vec            mode[6];
156026175e5SToby Isaac   PetscSection   section, globalSection;
1579d8fbdeaSMatthew G. Knepley   PetscInt       dim, dimEmbed, n, m, d, i, j;
158cb1e1211SMatthew G Knepley   PetscErrorCode ierr;
159cb1e1211SMatthew G Knepley 
160cb1e1211SMatthew G Knepley   PetscFunctionBegin;
161cb1e1211SMatthew G Knepley   ierr = PetscObjectGetComm((PetscObject)dm,&comm);CHKERRQ(ierr);
162c73cfb54SMatthew G. Knepley   ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr);
1639d8fbdeaSMatthew G. Knepley   ierr = DMGetCoordinateDim(dm, &dimEmbed);CHKERRQ(ierr);
164cb1e1211SMatthew G Knepley   if (dim == 1) {
165cb1e1211SMatthew G Knepley     ierr = MatNullSpaceCreate(comm, PETSC_TRUE, 0, NULL, sp);CHKERRQ(ierr);
166cb1e1211SMatthew G Knepley     PetscFunctionReturn(0);
167cb1e1211SMatthew G Knepley   }
168026175e5SToby Isaac   ierr = DMGetDefaultSection(dm, &section);CHKERRQ(ierr);
169026175e5SToby Isaac   ierr = DMGetDefaultGlobalSection(dm, &globalSection);CHKERRQ(ierr);
170cb1e1211SMatthew G Knepley   ierr = PetscSectionGetConstrainedStorageSize(globalSection, &n);CHKERRQ(ierr);
171cb1e1211SMatthew G Knepley   m    = (dim*(dim+1))/2;
172cb1e1211SMatthew G Knepley   ierr = VecCreate(comm, &mode[0]);CHKERRQ(ierr);
173cb1e1211SMatthew G Knepley   ierr = VecSetSizes(mode[0], n, PETSC_DETERMINE);CHKERRQ(ierr);
174cb1e1211SMatthew G Knepley   ierr = VecSetUp(mode[0]);CHKERRQ(ierr);
175cb1e1211SMatthew G Knepley   for (i = 1; i < m; ++i) {ierr = VecDuplicate(mode[0], &mode[i]);CHKERRQ(ierr);}
176026175e5SToby Isaac   for (d = 0; d < m; d++) {
177330485fdSToby Isaac     PetscInt         ctx[2];
178d1828a1cSMatthew G. Knepley     PetscErrorCode (*func)(PetscInt, PetscReal, const PetscReal *, PetscInt, PetscScalar *, void *) = DMPlexProjectRigidBody_Private;
179026175e5SToby Isaac     void            *voidctx = (void *) (&ctx[0]);
180cb1e1211SMatthew G Knepley 
1819d8fbdeaSMatthew G. Knepley     ctx[0] = dimEmbed;
182330485fdSToby Isaac     ctx[1] = d;
1830709b2feSToby Isaac     ierr = DMProjectFunction(dm, 0.0, &func, &voidctx, INSERT_VALUES, mode[d]);CHKERRQ(ierr);
184cb1e1211SMatthew G Knepley   }
185cb1e1211SMatthew G Knepley   for (i = 0; i < dim; ++i) {ierr = VecNormalize(mode[i], NULL);CHKERRQ(ierr);}
186cb1e1211SMatthew G Knepley   /* Orthonormalize system */
187cb1e1211SMatthew G Knepley   for (i = dim; i < m; ++i) {
188cb1e1211SMatthew G Knepley     PetscScalar dots[6];
189cb1e1211SMatthew G Knepley 
190cb1e1211SMatthew G Knepley     ierr = VecMDot(mode[i], i, mode, dots);CHKERRQ(ierr);
191cb1e1211SMatthew G Knepley     for (j = 0; j < i; ++j) dots[j] *= -1.0;
192cb1e1211SMatthew G Knepley     ierr = VecMAXPY(mode[i], i, dots, mode);CHKERRQ(ierr);
193cb1e1211SMatthew G Knepley     ierr = VecNormalize(mode[i], NULL);CHKERRQ(ierr);
194cb1e1211SMatthew G Knepley   }
195cb1e1211SMatthew G Knepley   ierr = MatNullSpaceCreate(comm, PETSC_FALSE, m, mode, sp);CHKERRQ(ierr);
196cb1e1211SMatthew G Knepley   for (i = 0; i< m; ++i) {ierr = VecDestroy(&mode[i]);CHKERRQ(ierr);}
197cb1e1211SMatthew G Knepley   PetscFunctionReturn(0);
198cb1e1211SMatthew G Knepley }
199cb1e1211SMatthew G Knepley 
200b29cfa1cSToby Isaac /*@
201b29cfa1cSToby Isaac   DMPlexSetMaxProjectionHeight - In DMPlexProjectXXXLocal() functions, the projected values of a basis function's dofs
202b29cfa1cSToby Isaac   are computed by associating the basis function with one of the mesh points in its transitively-closed support, and
203b29cfa1cSToby Isaac   evaluating the dual space basis of that point.  A basis function is associated with the point in its
204b29cfa1cSToby Isaac   transitively-closed support whose mesh height is highest (w.r.t. DAG height), but not greater than the maximum
205b29cfa1cSToby Isaac   projection height, which is set with this function.  By default, the maximum projection height is zero, which means
206b29cfa1cSToby Isaac   that only mesh cells are used to project basis functions.  A height of one, for example, evaluates a cell-interior
207b29cfa1cSToby Isaac   basis functions using its cells dual space basis, but all other basis functions with the dual space basis of a face.
208b29cfa1cSToby Isaac 
209b29cfa1cSToby Isaac   Input Parameters:
210b29cfa1cSToby Isaac + dm - the DMPlex object
211b29cfa1cSToby Isaac - height - the maximum projection height >= 0
212b29cfa1cSToby Isaac 
213b29cfa1cSToby Isaac   Level: advanced
214b29cfa1cSToby Isaac 
2154d6f44ffSToby Isaac .seealso: DMPlexGetMaxProjectionHeight(), DMProjectFunctionLocal(), DMProjectFunctionLabelLocal()
216b29cfa1cSToby Isaac @*/
217b29cfa1cSToby Isaac PetscErrorCode DMPlexSetMaxProjectionHeight(DM dm, PetscInt height)
218b29cfa1cSToby Isaac {
219b29cfa1cSToby Isaac   DM_Plex *plex = (DM_Plex *) dm->data;
220b29cfa1cSToby Isaac 
221b29cfa1cSToby Isaac   PetscFunctionBegin;
222b29cfa1cSToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
223b29cfa1cSToby Isaac   plex->maxProjectionHeight = height;
224b29cfa1cSToby Isaac   PetscFunctionReturn(0);
225b29cfa1cSToby Isaac }
226b29cfa1cSToby Isaac 
227b29cfa1cSToby Isaac /*@
228b29cfa1cSToby Isaac   DMPlexGetMaxProjectionHeight - Get the maximum height (w.r.t. DAG) of mesh points used to evaluate dual bases in
229b29cfa1cSToby Isaac   DMPlexProjectXXXLocal() functions.
230b29cfa1cSToby Isaac 
231b29cfa1cSToby Isaac   Input Parameters:
232b29cfa1cSToby Isaac . dm - the DMPlex object
233b29cfa1cSToby Isaac 
234b29cfa1cSToby Isaac   Output Parameters:
235b29cfa1cSToby Isaac . height - the maximum projection height
236b29cfa1cSToby Isaac 
237b29cfa1cSToby Isaac   Level: intermediate
238b29cfa1cSToby Isaac 
2394d6f44ffSToby Isaac .seealso: DMPlexSetMaxProjectionHeight(), DMProjectFunctionLocal(), DMProjectFunctionLabelLocal()
240b29cfa1cSToby Isaac @*/
241b29cfa1cSToby Isaac PetscErrorCode DMPlexGetMaxProjectionHeight(DM dm, PetscInt *height)
242b29cfa1cSToby Isaac {
243b29cfa1cSToby Isaac   DM_Plex *plex = (DM_Plex *) dm->data;
244b29cfa1cSToby Isaac 
245b29cfa1cSToby Isaac   PetscFunctionBegin;
246b29cfa1cSToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
247b29cfa1cSToby Isaac   *height = plex->maxProjectionHeight;
248b29cfa1cSToby Isaac   PetscFunctionReturn(0);
249b29cfa1cSToby Isaac }
250b29cfa1cSToby Isaac 
251*b278463cSMatthew G. Knepley /*@C
252*b278463cSMatthew G. Knepley   DMPlexInsertBoundaryValuesEssential - Insert boundary values into a local vector
253*b278463cSMatthew G. Knepley 
254*b278463cSMatthew G. Knepley   Input Parameters:
255*b278463cSMatthew G. Knepley + dm     - The DM, with a PetscDS that matches the problem being constrained
256*b278463cSMatthew G. Knepley . time   - The time
257*b278463cSMatthew G. Knepley . field  - The field to constrain
258*b278463cSMatthew G. Knepley . label  - The DMLabel defining constrained points
259*b278463cSMatthew G. Knepley . numids - The number of DMLabel ids for constrained points
260*b278463cSMatthew G. Knepley . ids    - An array of ids for constrained points
261*b278463cSMatthew G. Knepley . func   - A pointwise function giving boundary values
262*b278463cSMatthew G. Knepley - ctx    - An optional user context for bcFunc
263*b278463cSMatthew G. Knepley 
264*b278463cSMatthew G. Knepley   Output Parameter:
265*b278463cSMatthew G. Knepley . locX   - A local vector to receives the boundary values
266*b278463cSMatthew G. Knepley 
267*b278463cSMatthew G. Knepley   Level: developer
268*b278463cSMatthew G. Knepley 
269*b278463cSMatthew G. Knepley .seealso: DMPlexInsertBoundaryValuesEssentialField(), DMAddBoundary()
270*b278463cSMatthew G. Knepley @*/
271*b278463cSMatthew G. Knepley PetscErrorCode DMPlexInsertBoundaryValuesEssential(DM dm, PetscReal time, PetscInt field, DMLabel label, PetscInt numids, const PetscInt ids[], PetscErrorCode (*func)(PetscInt, PetscReal, const PetscReal[], PetscInt, PetscScalar *, void *), void *ctx, Vec locX)
27255f2e967SMatthew G. Knepley {
2730163fd50SMatthew G. Knepley   PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal x[], PetscInt, PetscScalar *u, void *ctx);
27455f2e967SMatthew G. Knepley   void            **ctxs;
275d7ddef95SMatthew G. Knepley   PetscInt          numFields;
276d7ddef95SMatthew G. Knepley   PetscErrorCode    ierr;
277d7ddef95SMatthew G. Knepley 
278d7ddef95SMatthew G. Knepley   PetscFunctionBegin;
279d7ddef95SMatthew G. Knepley   ierr = DMGetNumFields(dm, &numFields);CHKERRQ(ierr);
280d7ddef95SMatthew G. Knepley   ierr = PetscCalloc2(numFields,&funcs,numFields,&ctxs);CHKERRQ(ierr);
281d7ddef95SMatthew G. Knepley   funcs[field] = func;
282d7ddef95SMatthew G. Knepley   ctxs[field]  = ctx;
2830709b2feSToby Isaac   ierr = DMProjectFunctionLabelLocal(dm, time, label, numids, ids, funcs, ctxs, INSERT_BC_VALUES, locX);CHKERRQ(ierr);
284d7ddef95SMatthew G. Knepley   ierr = PetscFree2(funcs,ctxs);CHKERRQ(ierr);
285d7ddef95SMatthew G. Knepley   PetscFunctionReturn(0);
286d7ddef95SMatthew G. Knepley }
287d7ddef95SMatthew G. Knepley 
288*b278463cSMatthew G. Knepley /*@C
289*b278463cSMatthew G. Knepley   DMPlexInsertBoundaryValuesEssentialField - Insert boundary values into a local vector
290*b278463cSMatthew G. Knepley 
291*b278463cSMatthew G. Knepley   Input Parameters:
292*b278463cSMatthew G. Knepley + dm     - The DM, with a PetscDS that matches the problem being constrained
293*b278463cSMatthew G. Knepley . time   - The time
294*b278463cSMatthew G. Knepley . locU   - A local vector with the input solution values
295*b278463cSMatthew G. Knepley . field  - The field to constrain
296*b278463cSMatthew G. Knepley . label  - The DMLabel defining constrained points
297*b278463cSMatthew G. Knepley . numids - The number of DMLabel ids for constrained points
298*b278463cSMatthew G. Knepley . ids    - An array of ids for constrained points
299*b278463cSMatthew G. Knepley . func   - A pointwise function giving boundary values
300*b278463cSMatthew G. Knepley - ctx    - An optional user context for bcFunc
301*b278463cSMatthew G. Knepley 
302*b278463cSMatthew G. Knepley   Output Parameter:
303*b278463cSMatthew G. Knepley . locX   - A local vector to receives the boundary values
304*b278463cSMatthew G. Knepley 
305*b278463cSMatthew G. Knepley   Level: developer
306*b278463cSMatthew G. Knepley 
307*b278463cSMatthew G. Knepley .seealso: DMPlexInsertBoundaryValuesEssential(), DMAddBoundary()
308*b278463cSMatthew G. Knepley @*/
309*b278463cSMatthew G. Knepley PetscErrorCode DMPlexInsertBoundaryValuesEssentialField(DM dm, PetscReal time, Vec locU, PetscInt field, DMLabel label, PetscInt numids, const PetscInt ids[],
310c60e475cSMatthew G. Knepley                                                         void (*func)(PetscInt, PetscInt, PetscInt,
311c60e475cSMatthew G. Knepley                                                                      const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[],
312c60e475cSMatthew G. Knepley                                                                      const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[],
313*b278463cSMatthew G. Knepley                                                                      PetscReal, const PetscReal[],
314*b278463cSMatthew G. Knepley                                                                      PetscScalar[]),
315*b278463cSMatthew G. Knepley                                                         void *ctx, Vec locX)
316c60e475cSMatthew G. Knepley {
317c60e475cSMatthew G. Knepley   void (**funcs)(PetscInt, PetscInt, PetscInt,
318c60e475cSMatthew G. Knepley                  const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[],
319c60e475cSMatthew G. Knepley                  const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[],
320c60e475cSMatthew G. Knepley                  PetscReal, const PetscReal[], PetscScalar[]);
321c60e475cSMatthew G. Knepley   void            **ctxs;
322c60e475cSMatthew G. Knepley   PetscInt          numFields;
323c60e475cSMatthew G. Knepley   PetscErrorCode    ierr;
324c60e475cSMatthew G. Knepley 
325c60e475cSMatthew G. Knepley   PetscFunctionBegin;
326c60e475cSMatthew G. Knepley   ierr = DMGetNumFields(dm, &numFields);CHKERRQ(ierr);
327c60e475cSMatthew G. Knepley   ierr = PetscCalloc2(numFields,&funcs,numFields,&ctxs);CHKERRQ(ierr);
328c60e475cSMatthew G. Knepley   funcs[field] = func;
329c60e475cSMatthew G. Knepley   ctxs[field]  = ctx;
330c60e475cSMatthew G. Knepley   ierr = DMProjectFieldLabelLocal(dm, time, label, numids, ids, locU, funcs, INSERT_BC_VALUES, locX);CHKERRQ(ierr);
331c60e475cSMatthew G. Knepley   ierr = PetscFree2(funcs,ctxs);CHKERRQ(ierr);
332c60e475cSMatthew G. Knepley   PetscFunctionReturn(0);
333c60e475cSMatthew G. Knepley }
334c60e475cSMatthew G. Knepley 
335*b278463cSMatthew G. Knepley /*@C
336*b278463cSMatthew G. Knepley   DMPlexInsertBoundaryValuesRiemann - Insert boundary values into a local vector
337*b278463cSMatthew G. Knepley 
338*b278463cSMatthew G. Knepley   Input Parameters:
339*b278463cSMatthew G. Knepley + dm     - The DM, with a PetscDS that matches the problem being constrained
340*b278463cSMatthew G. Knepley . time   - The time
341*b278463cSMatthew G. Knepley . faceGeometry - A vector with the FVM face geometry information
342*b278463cSMatthew G. Knepley . cellGeometry - A vector with the FVM cell geometry information
343*b278463cSMatthew G. Knepley . Grad         - A vector with the FVM cell gradient information
344*b278463cSMatthew G. Knepley . field  - The field to constrain
345*b278463cSMatthew G. Knepley . label  - The DMLabel defining constrained points
346*b278463cSMatthew G. Knepley . numids - The number of DMLabel ids for constrained points
347*b278463cSMatthew G. Knepley . ids    - An array of ids for constrained points
348*b278463cSMatthew G. Knepley . func   - A pointwise function giving boundary values
349*b278463cSMatthew G. Knepley - ctx    - An optional user context for bcFunc
350*b278463cSMatthew G. Knepley 
351*b278463cSMatthew G. Knepley   Output Parameter:
352*b278463cSMatthew G. Knepley . locX   - A local vector to receives the boundary values
353*b278463cSMatthew G. Knepley 
354*b278463cSMatthew G. Knepley   Note: This implementation currently ignores the numcomps/comps argument from DMAddBoundary()
355*b278463cSMatthew G. Knepley 
356*b278463cSMatthew G. Knepley   Level: developer
357*b278463cSMatthew G. Knepley 
358*b278463cSMatthew G. Knepley .seealso: DMPlexInsertBoundaryValuesEssential(), DMPlexInsertBoundaryValuesEssentialField(), DMAddBoundary()
359*b278463cSMatthew G. Knepley @*/
360*b278463cSMatthew G. Knepley PetscErrorCode DMPlexInsertBoundaryValuesRiemann(DM dm, PetscReal time, Vec faceGeometry, Vec cellGeometry, Vec Grad, PetscInt field, DMLabel label, PetscInt numids, const PetscInt ids[],
361*b278463cSMatthew G. Knepley                                                  PetscErrorCode (*func)(PetscReal,const PetscReal*,const PetscReal*,const PetscScalar*,PetscScalar*,void*), void *ctx, Vec locX)
362d7ddef95SMatthew G. Knepley {
36361f58d28SMatthew G. Knepley   PetscDS            prob;
364da97024aSMatthew G. Knepley   PetscSF            sf;
365d7ddef95SMatthew G. Knepley   DM                 dmFace, dmCell, dmGrad;
36620369375SToby Isaac   const PetscScalar *facegeom, *cellgeom = NULL, *grad;
367da97024aSMatthew G. Knepley   const PetscInt    *leaves;
368d7ddef95SMatthew G. Knepley   PetscScalar       *x, *fx;
369520b3818SMatthew G. Knepley   PetscInt           dim, nleaves, loc, fStart, fEnd, pdim, i;
370e735a8a9SMatthew G. Knepley   PetscErrorCode     ierr, ierru = 0;
371d7ddef95SMatthew G. Knepley 
372d7ddef95SMatthew G. Knepley   PetscFunctionBegin;
373da97024aSMatthew G. Knepley   ierr = DMGetPointSF(dm, &sf);CHKERRQ(ierr);
374da97024aSMatthew G. Knepley   ierr = PetscSFGetGraph(sf, NULL, &nleaves, &leaves, NULL);CHKERRQ(ierr);
375da97024aSMatthew G. Knepley   nleaves = PetscMax(0, nleaves);
376d7ddef95SMatthew G. Knepley   ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr);
377d7ddef95SMatthew G. Knepley   ierr = DMPlexGetHeightStratum(dm, 1, &fStart, &fEnd);CHKERRQ(ierr);
37861f58d28SMatthew G. Knepley   ierr = DMGetDS(dm, &prob);CHKERRQ(ierr);
379d7ddef95SMatthew G. Knepley   ierr = VecGetDM(faceGeometry, &dmFace);CHKERRQ(ierr);
380d7ddef95SMatthew G. Knepley   ierr = VecGetArrayRead(faceGeometry, &facegeom);CHKERRQ(ierr);
38120369375SToby Isaac   if (cellGeometry) {
382d7ddef95SMatthew G. Knepley     ierr = VecGetDM(cellGeometry, &dmCell);CHKERRQ(ierr);
383d7ddef95SMatthew G. Knepley     ierr = VecGetArrayRead(cellGeometry, &cellgeom);CHKERRQ(ierr);
38420369375SToby Isaac   }
385d7ddef95SMatthew G. Knepley   if (Grad) {
386c0a6632aSMatthew G. Knepley     PetscFV fv;
387c0a6632aSMatthew G. Knepley 
388c0a6632aSMatthew G. Knepley     ierr = PetscDSGetDiscretization(prob, field, (PetscObject *) &fv);CHKERRQ(ierr);
389d7ddef95SMatthew G. Knepley     ierr = VecGetDM(Grad, &dmGrad);CHKERRQ(ierr);
390d7ddef95SMatthew G. Knepley     ierr = VecGetArrayRead(Grad, &grad);CHKERRQ(ierr);
391d7ddef95SMatthew G. Knepley     ierr = PetscFVGetNumComponents(fv, &pdim);CHKERRQ(ierr);
392d7ddef95SMatthew G. Knepley     ierr = DMGetWorkArray(dm, pdim, PETSC_SCALAR, &fx);CHKERRQ(ierr);
393d7ddef95SMatthew G. Knepley   }
394d7ddef95SMatthew G. Knepley   ierr = VecGetArray(locX, &x);CHKERRQ(ierr);
395d7ddef95SMatthew G. Knepley   for (i = 0; i < numids; ++i) {
396d7ddef95SMatthew G. Knepley     IS              faceIS;
397d7ddef95SMatthew G. Knepley     const PetscInt *faces;
398d7ddef95SMatthew G. Knepley     PetscInt        numFaces, f;
399d7ddef95SMatthew G. Knepley 
400d7ddef95SMatthew G. Knepley     ierr = DMLabelGetStratumIS(label, ids[i], &faceIS);CHKERRQ(ierr);
401d7ddef95SMatthew G. Knepley     if (!faceIS) continue; /* No points with that id on this process */
402d7ddef95SMatthew G. Knepley     ierr = ISGetLocalSize(faceIS, &numFaces);CHKERRQ(ierr);
403d7ddef95SMatthew G. Knepley     ierr = ISGetIndices(faceIS, &faces);CHKERRQ(ierr);
404d7ddef95SMatthew G. Knepley     for (f = 0; f < numFaces; ++f) {
405d7ddef95SMatthew G. Knepley       const PetscInt         face = faces[f], *cells;
406640bce14SSatish Balay       PetscFVFaceGeom        *fg;
407d7ddef95SMatthew G. Knepley 
408d7ddef95SMatthew G. Knepley       if ((face < fStart) || (face >= fEnd)) continue; /* Refinement adds non-faces to labels */
409da97024aSMatthew G. Knepley       ierr = PetscFindInt(face, nleaves, (PetscInt *) leaves, &loc);CHKERRQ(ierr);
410da97024aSMatthew G. Knepley       if (loc >= 0) continue;
411d7ddef95SMatthew G. Knepley       ierr = DMPlexPointLocalRead(dmFace, face, facegeom, &fg);CHKERRQ(ierr);
412d7ddef95SMatthew G. Knepley       ierr = DMPlexGetSupport(dm, face, &cells);CHKERRQ(ierr);
413d7ddef95SMatthew G. Knepley       if (Grad) {
414640bce14SSatish Balay         PetscFVCellGeom       *cg;
415640bce14SSatish Balay         PetscScalar           *cx, *cgrad;
416d7ddef95SMatthew G. Knepley         PetscScalar           *xG;
417d7ddef95SMatthew G. Knepley         PetscReal              dx[3];
418d7ddef95SMatthew G. Knepley         PetscInt               d;
419d7ddef95SMatthew G. Knepley 
420d7ddef95SMatthew G. Knepley         ierr = DMPlexPointLocalRead(dmCell, cells[0], cellgeom, &cg);CHKERRQ(ierr);
421d7ddef95SMatthew G. Knepley         ierr = DMPlexPointLocalRead(dm, cells[0], x, &cx);CHKERRQ(ierr);
422d7ddef95SMatthew G. Knepley         ierr = DMPlexPointLocalRead(dmGrad, cells[0], grad, &cgrad);CHKERRQ(ierr);
423520b3818SMatthew G. Knepley         ierr = DMPlexPointLocalFieldRef(dm, cells[1], field, x, &xG);CHKERRQ(ierr);
424d7ddef95SMatthew G. Knepley         DMPlex_WaxpyD_Internal(dim, -1, cg->centroid, fg->centroid, dx);
425d7ddef95SMatthew G. Knepley         for (d = 0; d < pdim; ++d) fx[d] = cx[d] + DMPlex_DotD_Internal(dim, &cgrad[d*dim], dx);
426e735a8a9SMatthew G. Knepley         ierru = (*func)(time, fg->centroid, fg->normal, fx, xG, ctx);
427e735a8a9SMatthew G. Knepley         if (ierru) {
428e735a8a9SMatthew G. Knepley           ierr = ISRestoreIndices(faceIS, &faces);CHKERRQ(ierr);
429e735a8a9SMatthew G. Knepley           ierr = ISDestroy(&faceIS);CHKERRQ(ierr);
430e735a8a9SMatthew G. Knepley           goto cleanup;
431e735a8a9SMatthew G. Knepley         }
432d7ddef95SMatthew G. Knepley       } else {
433640bce14SSatish Balay         PetscScalar       *xI;
434d7ddef95SMatthew G. Knepley         PetscScalar       *xG;
435d7ddef95SMatthew G. Knepley 
436d7ddef95SMatthew G. Knepley         ierr = DMPlexPointLocalRead(dm, cells[0], x, &xI);CHKERRQ(ierr);
437520b3818SMatthew G. Knepley         ierr = DMPlexPointLocalFieldRef(dm, cells[1], field, x, &xG);CHKERRQ(ierr);
438e735a8a9SMatthew G. Knepley         ierru = (*func)(time, fg->centroid, fg->normal, xI, xG, ctx);
439e735a8a9SMatthew G. Knepley         if (ierru) {
440e735a8a9SMatthew G. Knepley           ierr = ISRestoreIndices(faceIS, &faces);CHKERRQ(ierr);
441e735a8a9SMatthew G. Knepley           ierr = ISDestroy(&faceIS);CHKERRQ(ierr);
442e735a8a9SMatthew G. Knepley           goto cleanup;
443e735a8a9SMatthew G. Knepley         }
444d7ddef95SMatthew G. Knepley       }
445d7ddef95SMatthew G. Knepley     }
446d7ddef95SMatthew G. Knepley     ierr = ISRestoreIndices(faceIS, &faces);CHKERRQ(ierr);
447d7ddef95SMatthew G. Knepley     ierr = ISDestroy(&faceIS);CHKERRQ(ierr);
448d7ddef95SMatthew G. Knepley   }
449e735a8a9SMatthew G. Knepley   cleanup:
450d7ddef95SMatthew G. Knepley   ierr = VecRestoreArray(locX, &x);CHKERRQ(ierr);
451d7ddef95SMatthew G. Knepley   if (Grad) {
452d7ddef95SMatthew G. Knepley     ierr = DMRestoreWorkArray(dm, pdim, PETSC_SCALAR, &fx);CHKERRQ(ierr);
453d7ddef95SMatthew G. Knepley     ierr = VecRestoreArrayRead(Grad, &grad);CHKERRQ(ierr);
454d7ddef95SMatthew G. Knepley   }
455e735a8a9SMatthew G. Knepley   if (cellGeometry) {ierr = VecRestoreArrayRead(cellGeometry, &cellgeom);CHKERRQ(ierr);}
456d7ddef95SMatthew G. Knepley   ierr = VecRestoreArrayRead(faceGeometry, &facegeom);CHKERRQ(ierr);
457e735a8a9SMatthew G. Knepley   CHKERRQ(ierru);
458d7ddef95SMatthew G. Knepley   PetscFunctionReturn(0);
459d7ddef95SMatthew G. Knepley }
460d7ddef95SMatthew G. Knepley 
4619d24f7bbSMatthew G. Knepley /*@
4629d24f7bbSMatthew G. Knepley   DMPlexInsertBoundaryValues - Puts coefficients which represent boundary values into the local solution vector
4639d24f7bbSMatthew G. Knepley 
4649d24f7bbSMatthew G. Knepley   Input Parameters:
4659d24f7bbSMatthew G. Knepley + dm - The DM
4669d24f7bbSMatthew G. Knepley . insertEssential - Should I insert essential (e.g. Dirichlet) or inessential (e.g. Neumann) boundary conditions
4679d24f7bbSMatthew G. Knepley . time - The time
4689d24f7bbSMatthew G. Knepley . faceGeomFVM - Face geometry data for FV discretizations
4699d24f7bbSMatthew G. Knepley . cellGeomFVM - Cell geometry data for FV discretizations
4709d24f7bbSMatthew G. Knepley - gradFVM - Gradient reconstruction data for FV discretizations
4719d24f7bbSMatthew G. Knepley 
4729d24f7bbSMatthew G. Knepley   Output Parameters:
4739d24f7bbSMatthew G. Knepley . locX - Solution updated with boundary values
4749d24f7bbSMatthew G. Knepley 
4759d24f7bbSMatthew G. Knepley   Level: developer
4769d24f7bbSMatthew G. Knepley 
4779d24f7bbSMatthew G. Knepley .seealso: DMProjectFunctionLabelLocal()
4789d24f7bbSMatthew G. Knepley @*/
479bdd6f66aSToby Isaac PetscErrorCode DMPlexInsertBoundaryValues(DM dm, PetscBool insertEssential, Vec locX, PetscReal time, Vec faceGeomFVM, Vec cellGeomFVM, Vec gradFVM)
480d7ddef95SMatthew G. Knepley {
481d7ddef95SMatthew G. Knepley   PetscInt       numBd, b;
48255f2e967SMatthew G. Knepley   PetscErrorCode ierr;
48355f2e967SMatthew G. Knepley 
48455f2e967SMatthew G. Knepley   PetscFunctionBegin;
48555f2e967SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
486d7ddef95SMatthew G. Knepley   PetscValidHeaderSpecific(locX, VEC_CLASSID, 2);
487d7ddef95SMatthew G. Knepley   if (faceGeomFVM) {PetscValidHeaderSpecific(faceGeomFVM, VEC_CLASSID, 4);}
488d7ddef95SMatthew G. Knepley   if (cellGeomFVM) {PetscValidHeaderSpecific(cellGeomFVM, VEC_CLASSID, 5);}
489d7ddef95SMatthew G. Knepley   if (gradFVM)     {PetscValidHeaderSpecific(gradFVM, VEC_CLASSID, 6);}
490dff059c6SToby Isaac   ierr = PetscDSGetNumBoundary(dm->prob, &numBd);CHKERRQ(ierr);
49155f2e967SMatthew G. Knepley   for (b = 0; b < numBd; ++b) {
492f971fd6bSMatthew G. Knepley     DMBoundaryConditionType type;
493d7ddef95SMatthew G. Knepley     const char             *labelname;
494d7ddef95SMatthew G. Knepley     DMLabel                 label;
495d7ddef95SMatthew G. Knepley     PetscInt                field;
496d7ddef95SMatthew G. Knepley     PetscObject             obj;
497d7ddef95SMatthew G. Knepley     PetscClassId            id;
49855f2e967SMatthew G. Knepley     void                  (*func)();
499d7ddef95SMatthew G. Knepley     PetscInt                numids;
500d7ddef95SMatthew G. Knepley     const PetscInt         *ids;
50155f2e967SMatthew G. Knepley     void                   *ctx;
50255f2e967SMatthew G. Knepley 
503f971fd6bSMatthew G. Knepley     ierr = DMGetBoundary(dm, b, &type, NULL, &labelname, &field, NULL, NULL, &func, &numids, &ids, &ctx);CHKERRQ(ierr);
504f971fd6bSMatthew G. Knepley     if (insertEssential != (type & DM_BC_ESSENTIAL)) continue;
505c58f1c22SToby Isaac     ierr = DMGetLabel(dm, labelname, &label);CHKERRQ(ierr);
506d7ddef95SMatthew G. Knepley     ierr = DMGetField(dm, field, &obj);CHKERRQ(ierr);
507d7ddef95SMatthew G. Knepley     ierr = PetscObjectGetClassId(obj, &id);CHKERRQ(ierr);
508d7ddef95SMatthew G. Knepley     if (id == PETSCFE_CLASSID) {
509c60e475cSMatthew G. Knepley       switch (type) {
510c60e475cSMatthew G. Knepley         /* for FEM, there is no insertion to be done for non-essential boundary conditions */
511c60e475cSMatthew G. Knepley       case DM_BC_ESSENTIAL:
512092e5057SToby Isaac         ierr = DMPlexLabelAddCells(dm,label);CHKERRQ(ierr);
513*b278463cSMatthew G. Knepley         ierr = DMPlexInsertBoundaryValuesEssential(dm, time, field, label, numids, ids, (PetscErrorCode (*)(PetscInt, PetscReal, const PetscReal[], PetscInt, PetscScalar *, void *)) func, ctx, locX);CHKERRQ(ierr);
514092e5057SToby Isaac         ierr = DMPlexLabelClearCells(dm,label);CHKERRQ(ierr);
515c60e475cSMatthew G. Knepley         break;
516c60e475cSMatthew G. Knepley       case DM_BC_ESSENTIAL_FIELD:
517c60e475cSMatthew G. Knepley         ierr = DMPlexLabelAddCells(dm,label);CHKERRQ(ierr);
518*b278463cSMatthew G. Knepley         ierr = DMPlexInsertBoundaryValuesEssentialField(dm, time, locX, field, label, numids, ids,
519*b278463cSMatthew G. Knepley                                                         (void (*)(PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[],
520c60e475cSMatthew G. Knepley                                                                   const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[],
521c60e475cSMatthew G. Knepley                                                                   PetscReal, const PetscReal[], PetscScalar[])) func, ctx, locX);CHKERRQ(ierr);
522c60e475cSMatthew G. Knepley         ierr = DMPlexLabelClearCells(dm,label);CHKERRQ(ierr);
523c60e475cSMatthew G. Knepley         break;
524c60e475cSMatthew G. Knepley       default: break;
525c60e475cSMatthew G. Knepley       }
526d7ddef95SMatthew G. Knepley     } else if (id == PETSCFV_CLASSID) {
52743ea7facSMatthew G. Knepley       if (!faceGeomFVM) continue;
528*b278463cSMatthew G. Knepley       ierr = DMPlexInsertBoundaryValuesRiemann(dm, time, faceGeomFVM, cellGeomFVM, gradFVM, field, label, numids, ids,
529*b278463cSMatthew G. Knepley                                                (PetscErrorCode (*)(PetscReal,const PetscReal*,const PetscReal*,const PetscScalar*,PetscScalar*,void*)) func, ctx, locX);CHKERRQ(ierr);
530d7ddef95SMatthew G. Knepley     } else SETERRQ1(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %d", field);
53155f2e967SMatthew G. Knepley   }
53255f2e967SMatthew G. Knepley   PetscFunctionReturn(0);
53355f2e967SMatthew G. Knepley }
53455f2e967SMatthew G. Knepley 
5350709b2feSToby Isaac PetscErrorCode DMComputeL2Diff_Plex(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal [], PetscInt, PetscScalar *, void *), void **ctxs, Vec X, PetscReal *diff)
536cb1e1211SMatthew G Knepley {
537cb1e1211SMatthew G Knepley   const PetscInt   debug = 0;
538cb1e1211SMatthew G Knepley   PetscSection     section;
539c5bbbd5bSMatthew G. Knepley   PetscQuadrature  quad;
540cb1e1211SMatthew G Knepley   Vec              localX;
54115496722SMatthew G. Knepley   PetscScalar     *funcVal, *interpolant;
5427318780aSToby Isaac   PetscReal       *coords, *detJ, *J;
543cb1e1211SMatthew G Knepley   PetscReal        localDiff = 0.0;
5447318780aSToby Isaac   const PetscReal *quadWeights;
5457318780aSToby Isaac   PetscInt         dim, coordDim, numFields, numComponents = 0, Nq, cStart, cEnd, cEndInterior, c, field, fieldOffset;
546cb1e1211SMatthew G Knepley   PetscErrorCode   ierr;
547cb1e1211SMatthew G Knepley 
548cb1e1211SMatthew G Knepley   PetscFunctionBegin;
549c73cfb54SMatthew G. Knepley   ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr);
5507318780aSToby Isaac   ierr = DMGetCoordinateDim(dm, &coordDim);CHKERRQ(ierr);
551cb1e1211SMatthew G Knepley   ierr = DMGetDefaultSection(dm, &section);CHKERRQ(ierr);
552cb1e1211SMatthew G Knepley   ierr = PetscSectionGetNumFields(section, &numFields);CHKERRQ(ierr);
553cb1e1211SMatthew G Knepley   ierr = DMGetLocalVector(dm, &localX);CHKERRQ(ierr);
554bdd6f66aSToby Isaac   ierr = DMProjectFunctionLocal(dm, time, funcs, ctxs, INSERT_BC_VALUES, localX);CHKERRQ(ierr);
555cb1e1211SMatthew G Knepley   ierr = DMGlobalToLocalBegin(dm, X, INSERT_VALUES, localX);CHKERRQ(ierr);
556cb1e1211SMatthew G Knepley   ierr = DMGlobalToLocalEnd(dm, X, INSERT_VALUES, localX);CHKERRQ(ierr);
557cb1e1211SMatthew G Knepley   for (field = 0; field < numFields; ++field) {
55815496722SMatthew G. Knepley     PetscObject  obj;
55915496722SMatthew G. Knepley     PetscClassId id;
560c5bbbd5bSMatthew G. Knepley     PetscInt     Nc;
561c5bbbd5bSMatthew G. Knepley 
56215496722SMatthew G. Knepley     ierr = DMGetField(dm, field, &obj);CHKERRQ(ierr);
56315496722SMatthew G. Knepley     ierr = PetscObjectGetClassId(obj, &id);CHKERRQ(ierr);
56415496722SMatthew G. Knepley     if (id == PETSCFE_CLASSID) {
56515496722SMatthew G. Knepley       PetscFE fe = (PetscFE) obj;
56615496722SMatthew G. Knepley 
5670f2d7e86SMatthew G. Knepley       ierr = PetscFEGetQuadrature(fe, &quad);CHKERRQ(ierr);
5680f2d7e86SMatthew G. Knepley       ierr = PetscFEGetNumComponents(fe, &Nc);CHKERRQ(ierr);
56915496722SMatthew G. Knepley     } else if (id == PETSCFV_CLASSID) {
57015496722SMatthew G. Knepley       PetscFV fv = (PetscFV) obj;
57115496722SMatthew G. Knepley 
57215496722SMatthew G. Knepley       ierr = PetscFVGetQuadrature(fv, &quad);CHKERRQ(ierr);
57315496722SMatthew G. Knepley       ierr = PetscFVGetNumComponents(fv, &Nc);CHKERRQ(ierr);
57415496722SMatthew G. Knepley     } else SETERRQ1(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %d", field);
575c5bbbd5bSMatthew G. Knepley     numComponents += Nc;
576cb1e1211SMatthew G Knepley   }
5777318780aSToby Isaac   ierr = PetscQuadratureGetData(quad, NULL, &Nq, NULL, &quadWeights);CHKERRQ(ierr);
5787318780aSToby Isaac   ierr = PetscMalloc5(numComponents,&funcVal,numComponents,&interpolant,coordDim*Nq,&coords,Nq,&detJ,coordDim*coordDim*Nq,&J);CHKERRQ(ierr);
579cb1e1211SMatthew G Knepley   ierr = DMPlexGetHeightStratum(dm, 0, &cStart, &cEnd);CHKERRQ(ierr);
5809ac3fadcSMatthew G. Knepley   ierr = DMPlexGetHybridBounds(dm, &cEndInterior, NULL, NULL, NULL);CHKERRQ(ierr);
5819ac3fadcSMatthew G. Knepley   cEnd = cEndInterior < 0 ? cEnd : cEndInterior;
582cb1e1211SMatthew G Knepley   for (c = cStart; c < cEnd; ++c) {
583a1e44745SMatthew G. Knepley     PetscScalar *x = NULL;
584cb1e1211SMatthew G Knepley     PetscReal    elemDiff = 0.0;
585cb1e1211SMatthew G Knepley 
5867318780aSToby Isaac     ierr = DMPlexComputeCellGeometryFEM(dm, c, quad, coords, J, NULL, detJ);CHKERRQ(ierr);
587cb1e1211SMatthew G Knepley     ierr = DMPlexVecGetClosure(dm, NULL, localX, c, NULL, &x);CHKERRQ(ierr);
588cb1e1211SMatthew G Knepley 
58915496722SMatthew G. Knepley     for (field = 0, fieldOffset = 0; field < numFields; ++field) {
59015496722SMatthew G. Knepley       PetscObject  obj;
59115496722SMatthew G. Knepley       PetscClassId id;
592c110b1eeSGeoffrey Irving       void * const ctx = ctxs ? ctxs[field] : NULL;
59315496722SMatthew G. Knepley       PetscInt     Nb, Nc, q, fc;
594cb1e1211SMatthew G Knepley 
59515496722SMatthew G. Knepley       ierr = DMGetField(dm, field, &obj);CHKERRQ(ierr);
59615496722SMatthew G. Knepley       ierr = PetscObjectGetClassId(obj, &id);CHKERRQ(ierr);
59715496722SMatthew G. Knepley       if (id == PETSCFE_CLASSID)      {ierr = PetscFEGetNumComponents((PetscFE) obj, &Nc);CHKERRQ(ierr);ierr = PetscFEGetDimension((PetscFE) obj, &Nb);CHKERRQ(ierr);}
59815496722SMatthew G. Knepley       else if (id == PETSCFV_CLASSID) {ierr = PetscFVGetNumComponents((PetscFV) obj, &Nc);CHKERRQ(ierr);Nb = 1;}
59915496722SMatthew G. Knepley       else SETERRQ1(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %d", field);
600cb1e1211SMatthew G Knepley       if (debug) {
601cb1e1211SMatthew G Knepley         char title[1024];
602cb1e1211SMatthew G Knepley         ierr = PetscSNPrintf(title, 1023, "Solution for Field %d", field);CHKERRQ(ierr);
60315496722SMatthew G. Knepley         ierr = DMPrintCellVector(c, title, Nb*Nc, &x[fieldOffset]);CHKERRQ(ierr);
604cb1e1211SMatthew G Knepley       }
6057318780aSToby Isaac       for (q = 0; q < Nq; ++q) {
6067318780aSToby Isaac         if (detJ[q] <= 0.0) SETERRQ3(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Invalid determinant %g for element %D, point %D", detJ[q], c, q);
6077318780aSToby Isaac         ierr = (*funcs[field])(coordDim, time, &coords[coordDim * q], Nc, funcVal, ctx);
608e735a8a9SMatthew G. Knepley         if (ierr) {
609e735a8a9SMatthew G. Knepley           PetscErrorCode ierr2;
610e735a8a9SMatthew G. Knepley           ierr2 = DMPlexVecRestoreClosure(dm, NULL, localX, c, NULL, &x);CHKERRQ(ierr2);
611e735a8a9SMatthew G. Knepley           ierr2 = DMRestoreLocalVector(dm, &localX);CHKERRQ(ierr2);
6127318780aSToby Isaac           ierr2 = PetscFree5(funcVal,interpolant,coords,detJ,J);CHKERRQ(ierr2);
613e735a8a9SMatthew G. Knepley           CHKERRQ(ierr);
614e735a8a9SMatthew G. Knepley         }
61515496722SMatthew G. Knepley         if (id == PETSCFE_CLASSID)      {ierr = PetscFEInterpolate_Static((PetscFE) obj, &x[fieldOffset], q, interpolant);CHKERRQ(ierr);}
61615496722SMatthew G. Knepley         else if (id == PETSCFV_CLASSID) {ierr = PetscFVInterpolate_Static((PetscFV) obj, &x[fieldOffset], q, interpolant);CHKERRQ(ierr);}
61715496722SMatthew G. Knepley         else SETERRQ1(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %d", field);
61815496722SMatthew G. Knepley         for (fc = 0; fc < Nc; ++fc) {
6197318780aSToby Isaac           if (debug) {ierr = PetscPrintf(PETSC_COMM_SELF, "    elem %d field %d diff %g\n", c, field, PetscSqr(PetscRealPart(interpolant[fc] - funcVal[fc]))*quadWeights[q]*detJ[q]);CHKERRQ(ierr);}
6207318780aSToby Isaac           elemDiff += PetscSqr(PetscRealPart(interpolant[fc] - funcVal[fc]))*quadWeights[q]*detJ[q];
621cb1e1211SMatthew G Knepley         }
622cb1e1211SMatthew G Knepley       }
62315496722SMatthew G. Knepley       fieldOffset += Nb*Nc;
624cb1e1211SMatthew G Knepley     }
625cb1e1211SMatthew G Knepley     ierr = DMPlexVecRestoreClosure(dm, NULL, localX, c, NULL, &x);CHKERRQ(ierr);
626cb1e1211SMatthew G Knepley     if (debug) {ierr = PetscPrintf(PETSC_COMM_SELF, "  elem %d diff %g\n", c, elemDiff);CHKERRQ(ierr);}
627cb1e1211SMatthew G Knepley     localDiff += elemDiff;
628cb1e1211SMatthew G Knepley   }
6297318780aSToby Isaac   ierr  = PetscFree5(funcVal,interpolant,coords,detJ,J);CHKERRQ(ierr);
630cb1e1211SMatthew G Knepley   ierr  = DMRestoreLocalVector(dm, &localX);CHKERRQ(ierr);
631b2566f29SBarry Smith   ierr  = MPIU_Allreduce(&localDiff, diff, 1, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)dm));CHKERRQ(ierr);
632cb1e1211SMatthew G Knepley   *diff = PetscSqrtReal(*diff);
633cb1e1211SMatthew G Knepley   PetscFunctionReturn(0);
634cb1e1211SMatthew G Knepley }
635cb1e1211SMatthew G Knepley 
636b698f381SToby Isaac PetscErrorCode DMComputeL2GradientDiff_Plex(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal [], const PetscReal [], PetscInt, PetscScalar *, void *), void **ctxs, Vec X, const PetscReal n[], PetscReal *diff)
637cb1e1211SMatthew G Knepley {
63840e14135SMatthew G. Knepley   const PetscInt  debug = 0;
639cb1e1211SMatthew G Knepley   PetscSection    section;
64040e14135SMatthew G. Knepley   PetscQuadrature quad;
64140e14135SMatthew G. Knepley   Vec             localX;
64240e14135SMatthew G. Knepley   PetscScalar    *funcVal, *interpolantVec;
6437318780aSToby Isaac   PetscReal      *coords, *realSpaceDer, *J, *invJ, *detJ;
64440e14135SMatthew G. Knepley   PetscReal       localDiff = 0.0;
6457318780aSToby Isaac   PetscInt        dim, coordDim, Nq = 0, numFields, numComponents = 0, cStart, cEnd, cEndInterior, c, field, fieldOffset, comp;
646cb1e1211SMatthew G Knepley   PetscErrorCode  ierr;
647cb1e1211SMatthew G Knepley 
648cb1e1211SMatthew G Knepley   PetscFunctionBegin;
649c73cfb54SMatthew G. Knepley   ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr);
6507318780aSToby Isaac   ierr = DMGetCoordinateDim(dm, &coordDim);CHKERRQ(ierr);
65140e14135SMatthew G. Knepley   ierr = DMGetDefaultSection(dm, &section);CHKERRQ(ierr);
65240e14135SMatthew G. Knepley   ierr = PetscSectionGetNumFields(section, &numFields);CHKERRQ(ierr);
65340e14135SMatthew G. Knepley   ierr = DMGetLocalVector(dm, &localX);CHKERRQ(ierr);
65440e14135SMatthew G. Knepley   ierr = DMGlobalToLocalBegin(dm, X, INSERT_VALUES, localX);CHKERRQ(ierr);
65540e14135SMatthew G. Knepley   ierr = DMGlobalToLocalEnd(dm, X, INSERT_VALUES, localX);CHKERRQ(ierr);
656652b88e8SMatthew G. Knepley   for (field = 0; field < numFields; ++field) {
6570f2d7e86SMatthew G. Knepley     PetscFE  fe;
65840e14135SMatthew G. Knepley     PetscInt Nc;
659652b88e8SMatthew G. Knepley 
6600f2d7e86SMatthew G. Knepley     ierr = DMGetField(dm, field, (PetscObject *) &fe);CHKERRQ(ierr);
6610f2d7e86SMatthew G. Knepley     ierr = PetscFEGetQuadrature(fe, &quad);CHKERRQ(ierr);
6627318780aSToby Isaac     ierr = PetscQuadratureGetData(quad, NULL, &Nq, NULL, NULL);CHKERRQ(ierr);
6630f2d7e86SMatthew G. Knepley     ierr = PetscFEGetNumComponents(fe, &Nc);CHKERRQ(ierr);
66440e14135SMatthew G. Knepley     numComponents += Nc;
665652b88e8SMatthew G. Knepley   }
6664d6f44ffSToby Isaac   /* ierr = DMProjectFunctionLocal(dm, fe, funcs, INSERT_BC_VALUES, localX);CHKERRQ(ierr); */
6677318780aSToby Isaac   ierr = PetscMalloc7(numComponents,&funcVal,coordDim*Nq,&coords,coordDim*Nq,&realSpaceDer,coordDim*coordDim*Nq,&J,coordDim*coordDim*Nq,&invJ,coordDim,&interpolantVec,Nq,&detJ);CHKERRQ(ierr);
66840e14135SMatthew G. Knepley   ierr = DMPlexGetHeightStratum(dm, 0, &cStart, &cEnd);CHKERRQ(ierr);
6699ac3fadcSMatthew G. Knepley   ierr = DMPlexGetHybridBounds(dm, &cEndInterior, NULL, NULL, NULL);CHKERRQ(ierr);
6709ac3fadcSMatthew G. Knepley   cEnd = cEndInterior < 0 ? cEnd : cEndInterior;
67140e14135SMatthew G. Knepley   for (c = cStart; c < cEnd; ++c) {
67240e14135SMatthew G. Knepley     PetscScalar *x = NULL;
67340e14135SMatthew G. Knepley     PetscReal    elemDiff = 0.0;
674652b88e8SMatthew G. Knepley 
6757318780aSToby Isaac     ierr = DMPlexComputeCellGeometryFEM(dm, c, quad, coords, J, invJ, detJ);CHKERRQ(ierr);
67640e14135SMatthew G. Knepley     ierr = DMPlexVecGetClosure(dm, NULL, localX, c, NULL, &x);CHKERRQ(ierr);
67740e14135SMatthew G. Knepley 
67840e14135SMatthew G. Knepley     for (field = 0, comp = 0, fieldOffset = 0; field < numFields; ++field) {
6790f2d7e86SMatthew G. Knepley       PetscFE          fe;
68051259fa3SMatthew G. Knepley       void * const     ctx = ctxs ? ctxs[field] : NULL;
68121454ff5SMatthew G. Knepley       const PetscReal *quadPoints, *quadWeights;
68240e14135SMatthew G. Knepley       PetscReal       *basisDer;
6837318780aSToby Isaac       PetscInt         numQuadPoints, Nb, Ncomp, q, d, fc, f, g;
68440e14135SMatthew G. Knepley 
6850f2d7e86SMatthew G. Knepley       ierr = DMGetField(dm, field, (PetscObject *) &fe);CHKERRQ(ierr);
68621454ff5SMatthew G. Knepley       ierr = PetscQuadratureGetData(quad, NULL, &numQuadPoints, &quadPoints, &quadWeights);CHKERRQ(ierr);
6870f2d7e86SMatthew G. Knepley       ierr = PetscFEGetDimension(fe, &Nb);CHKERRQ(ierr);
6880f2d7e86SMatthew G. Knepley       ierr = PetscFEGetNumComponents(fe, &Ncomp);CHKERRQ(ierr);
6890f2d7e86SMatthew G. Knepley       ierr = PetscFEGetDefaultTabulation(fe, NULL, &basisDer, NULL);CHKERRQ(ierr);
69040e14135SMatthew G. Knepley       if (debug) {
69140e14135SMatthew G. Knepley         char title[1024];
69240e14135SMatthew G. Knepley         ierr = PetscSNPrintf(title, 1023, "Solution for Field %d", field);CHKERRQ(ierr);
69340e14135SMatthew G. Knepley         ierr = DMPrintCellVector(c, title, Nb*Ncomp, &x[fieldOffset]);CHKERRQ(ierr);
694652b88e8SMatthew G. Knepley       }
69540e14135SMatthew G. Knepley       for (q = 0; q < numQuadPoints; ++q) {
6967318780aSToby Isaac         if (detJ[q] <= 0.0) SETERRQ3(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Invalid determinant %g for element %D, quadrature points %D", detJ[q], c, q);
6977318780aSToby Isaac         ierr = (*funcs[field])(coordDim, time, &coords[q*coordDim], n, numFields, funcVal, ctx);
698e735a8a9SMatthew G. Knepley         if (ierr) {
699e735a8a9SMatthew G. Knepley           PetscErrorCode ierr2;
700e735a8a9SMatthew G. Knepley           ierr2 = DMPlexVecRestoreClosure(dm, NULL, localX, c, NULL, &x);CHKERRQ(ierr2);
701e735a8a9SMatthew G. Knepley           ierr2 = DMRestoreLocalVector(dm, &localX);CHKERRQ(ierr2);
7027318780aSToby Isaac           ierr2 = PetscFree7(funcVal,coords,realSpaceDer,J,invJ,interpolantVec,detJ);CHKERRQ(ierr2);
703e735a8a9SMatthew G. Knepley           CHKERRQ(ierr);
704e735a8a9SMatthew G. Knepley         }
70540e14135SMatthew G. Knepley         for (fc = 0; fc < Ncomp; ++fc) {
70640e14135SMatthew G. Knepley           PetscScalar interpolant = 0.0;
70740e14135SMatthew G. Knepley 
7087318780aSToby Isaac           for (d = 0; d < coordDim; ++d) interpolantVec[d] = 0.0;
70940e14135SMatthew G. Knepley           for (f = 0; f < Nb; ++f) {
71040e14135SMatthew G. Knepley             const PetscInt fidx = f*Ncomp+fc;
71140e14135SMatthew G. Knepley 
7127318780aSToby Isaac             for (d = 0; d < coordDim; ++d) {
71340e14135SMatthew G. Knepley               realSpaceDer[d] = 0.0;
71440e14135SMatthew G. Knepley               for (g = 0; g < dim; ++g) {
7157318780aSToby Isaac                 realSpaceDer[d] += invJ[coordDim * coordDim * q + g*coordDim+d]*basisDer[(q*Nb*Ncomp+fidx)*dim+g];
71640e14135SMatthew G. Knepley               }
71740e14135SMatthew G. Knepley               interpolantVec[d] += x[fieldOffset+fidx]*realSpaceDer[d];
71840e14135SMatthew G. Knepley             }
71940e14135SMatthew G. Knepley           }
7207318780aSToby Isaac           for (d = 0; d < coordDim; ++d) interpolant += interpolantVec[d]*n[d];
7217318780aSToby Isaac           if (debug) {ierr = PetscPrintf(PETSC_COMM_SELF, "    elem %d fieldDer %d diff %g\n", c, field, PetscSqr(PetscRealPart(interpolant - funcVal[fc]))*quadWeights[q]*detJ[q]);CHKERRQ(ierr);}
7227318780aSToby Isaac           elemDiff += PetscSqr(PetscRealPart(interpolant - funcVal[fc]))*quadWeights[q]*detJ[q];
72340e14135SMatthew G. Knepley         }
72440e14135SMatthew G. Knepley       }
72540e14135SMatthew G. Knepley       comp        += Ncomp;
72640e14135SMatthew G. Knepley       fieldOffset += Nb*Ncomp;
72740e14135SMatthew G. Knepley     }
72840e14135SMatthew G. Knepley     ierr = DMPlexVecRestoreClosure(dm, NULL, localX, c, NULL, &x);CHKERRQ(ierr);
72940e14135SMatthew G. Knepley     if (debug) {ierr = PetscPrintf(PETSC_COMM_SELF, "  elem %d diff %g\n", c, elemDiff);CHKERRQ(ierr);}
73040e14135SMatthew G. Knepley     localDiff += elemDiff;
73140e14135SMatthew G. Knepley   }
7327318780aSToby Isaac   ierr  = PetscFree7(funcVal,coords,realSpaceDer,J,invJ,interpolantVec,detJ);CHKERRQ(ierr);
73340e14135SMatthew G. Knepley   ierr  = DMRestoreLocalVector(dm, &localX);CHKERRQ(ierr);
734b2566f29SBarry Smith   ierr  = MPIU_Allreduce(&localDiff, diff, 1, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)dm));CHKERRQ(ierr);
73540e14135SMatthew G. Knepley   *diff = PetscSqrtReal(*diff);
736cb1e1211SMatthew G Knepley   PetscFunctionReturn(0);
737cb1e1211SMatthew G Knepley }
738cb1e1211SMatthew G Knepley 
739c6eecec3SToby Isaac PetscErrorCode DMComputeL2FieldDiff_Plex(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal [], PetscInt, PetscScalar *, void *), void **ctxs, Vec X, PetscReal *diff)
74073d901b8SMatthew G. Knepley {
74173d901b8SMatthew G. Knepley   const PetscInt   debug = 0;
74273d901b8SMatthew G. Knepley   PetscSection     section;
74373d901b8SMatthew G. Knepley   PetscQuadrature  quad;
74473d901b8SMatthew G. Knepley   Vec              localX;
74515496722SMatthew G. Knepley   PetscScalar     *funcVal, *interpolant;
7467318780aSToby Isaac   PetscReal       *coords, *detJ, *J;
74773d901b8SMatthew G. Knepley   PetscReal       *localDiff;
74815496722SMatthew G. Knepley   const PetscReal *quadPoints, *quadWeights;
7497318780aSToby Isaac   PetscInt         dim, coordDim, numFields, numComponents = 0, Nq, cStart, cEnd, cEndInterior, c, field, fieldOffset;
75073d901b8SMatthew G. Knepley   PetscErrorCode   ierr;
75173d901b8SMatthew G. Knepley 
75273d901b8SMatthew G. Knepley   PetscFunctionBegin;
753c73cfb54SMatthew G. Knepley   ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr);
7547318780aSToby Isaac   ierr = DMGetCoordinateDim(dm, &coordDim);CHKERRQ(ierr);
75573d901b8SMatthew G. Knepley   ierr = DMGetDefaultSection(dm, &section);CHKERRQ(ierr);
75673d901b8SMatthew G. Knepley   ierr = PetscSectionGetNumFields(section, &numFields);CHKERRQ(ierr);
75773d901b8SMatthew G. Knepley   ierr = DMGetLocalVector(dm, &localX);CHKERRQ(ierr);
758bdd6f66aSToby Isaac   ierr = DMProjectFunctionLocal(dm, time, funcs, ctxs, INSERT_BC_VALUES, localX);CHKERRQ(ierr);
75973d901b8SMatthew G. Knepley   ierr = DMGlobalToLocalBegin(dm, X, INSERT_VALUES, localX);CHKERRQ(ierr);
76073d901b8SMatthew G. Knepley   ierr = DMGlobalToLocalEnd(dm, X, INSERT_VALUES, localX);CHKERRQ(ierr);
76173d901b8SMatthew G. Knepley   for (field = 0; field < numFields; ++field) {
76215496722SMatthew G. Knepley     PetscObject  obj;
76315496722SMatthew G. Knepley     PetscClassId id;
76473d901b8SMatthew G. Knepley     PetscInt     Nc;
76573d901b8SMatthew G. Knepley 
76615496722SMatthew G. Knepley     ierr = DMGetField(dm, field, &obj);CHKERRQ(ierr);
76715496722SMatthew G. Knepley     ierr = PetscObjectGetClassId(obj, &id);CHKERRQ(ierr);
76815496722SMatthew G. Knepley     if (id == PETSCFE_CLASSID) {
76915496722SMatthew G. Knepley       PetscFE fe = (PetscFE) obj;
77015496722SMatthew G. Knepley 
7710f2d7e86SMatthew G. Knepley       ierr = PetscFEGetQuadrature(fe, &quad);CHKERRQ(ierr);
7720f2d7e86SMatthew G. Knepley       ierr = PetscFEGetNumComponents(fe, &Nc);CHKERRQ(ierr);
77315496722SMatthew G. Knepley     } else if (id == PETSCFV_CLASSID) {
77415496722SMatthew G. Knepley       PetscFV fv = (PetscFV) obj;
77515496722SMatthew G. Knepley 
77615496722SMatthew G. Knepley       ierr = PetscFVGetQuadrature(fv, &quad);CHKERRQ(ierr);
77715496722SMatthew G. Knepley       ierr = PetscFVGetNumComponents(fv, &Nc);CHKERRQ(ierr);
77815496722SMatthew G. Knepley     } else SETERRQ1(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %d", field);
77973d901b8SMatthew G. Knepley     numComponents += Nc;
78073d901b8SMatthew G. Knepley   }
7817318780aSToby Isaac   ierr = PetscQuadratureGetData(quad, NULL, &Nq, &quadPoints, &quadWeights);CHKERRQ(ierr);
7827318780aSToby Isaac   ierr = PetscCalloc6(numFields,&localDiff,numComponents,&funcVal,numComponents,&interpolant,coordDim*Nq,&coords,Nq,&detJ,coordDim*coordDim*Nq,&J);CHKERRQ(ierr);
78373d901b8SMatthew G. Knepley   ierr = DMPlexGetHeightStratum(dm, 0, &cStart, &cEnd);CHKERRQ(ierr);
7849ac3fadcSMatthew G. Knepley   ierr = DMPlexGetHybridBounds(dm, &cEndInterior, NULL, NULL, NULL);CHKERRQ(ierr);
7859ac3fadcSMatthew G. Knepley   cEnd = cEndInterior < 0 ? cEnd : cEndInterior;
78673d901b8SMatthew G. Knepley   for (c = cStart; c < cEnd; ++c) {
78773d901b8SMatthew G. Knepley     PetscScalar *x = NULL;
78873d901b8SMatthew G. Knepley 
7897318780aSToby Isaac     ierr = DMPlexComputeCellGeometryFEM(dm, c, quad, coords, J, NULL, detJ);CHKERRQ(ierr);
79073d901b8SMatthew G. Knepley     ierr = DMPlexVecGetClosure(dm, NULL, localX, c, NULL, &x);CHKERRQ(ierr);
79173d901b8SMatthew G. Knepley 
79215496722SMatthew G. Knepley     for (field = 0, fieldOffset = 0; field < numFields; ++field) {
79315496722SMatthew G. Knepley       PetscObject  obj;
79415496722SMatthew G. Knepley       PetscClassId id;
79573d901b8SMatthew G. Knepley       void * const ctx = ctxs ? ctxs[field] : NULL;
79615496722SMatthew G. Knepley       PetscInt     Nb, Nc, q, fc;
79773d901b8SMatthew G. Knepley 
79815496722SMatthew G. Knepley       PetscReal       elemDiff = 0.0;
79915496722SMatthew G. Knepley 
80015496722SMatthew G. Knepley       ierr = DMGetField(dm, field, &obj);CHKERRQ(ierr);
80115496722SMatthew G. Knepley       ierr = PetscObjectGetClassId(obj, &id);CHKERRQ(ierr);
80215496722SMatthew G. Knepley       if (id == PETSCFE_CLASSID)      {ierr = PetscFEGetNumComponents((PetscFE) obj, &Nc);CHKERRQ(ierr);ierr = PetscFEGetDimension((PetscFE) obj, &Nb);CHKERRQ(ierr);}
80315496722SMatthew G. Knepley       else if (id == PETSCFV_CLASSID) {ierr = PetscFVGetNumComponents((PetscFV) obj, &Nc);CHKERRQ(ierr);Nb = 1;}
80415496722SMatthew G. Knepley       else SETERRQ1(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %d", field);
80573d901b8SMatthew G. Knepley       if (debug) {
80673d901b8SMatthew G. Knepley         char title[1024];
80773d901b8SMatthew G. Knepley         ierr = PetscSNPrintf(title, 1023, "Solution for Field %d", field);CHKERRQ(ierr);
80815496722SMatthew G. Knepley         ierr = DMPrintCellVector(c, title, Nb*Nc, &x[fieldOffset]);CHKERRQ(ierr);
80973d901b8SMatthew G. Knepley       }
8107318780aSToby Isaac       for (q = 0; q < Nq; ++q) {
8117318780aSToby Isaac         if (detJ[q] <= 0.0) SETERRQ3(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Invalid determinant %g for element %D, quadrature point %D", detJ, c, q);
8127318780aSToby Isaac         ierr = (*funcs[field])(coordDim, time, &coords[coordDim*q], numFields, funcVal, ctx);
813e735a8a9SMatthew G. Knepley         if (ierr) {
814e735a8a9SMatthew G. Knepley           PetscErrorCode ierr2;
815e735a8a9SMatthew G. Knepley           ierr2 = DMPlexVecRestoreClosure(dm, NULL, localX, c, NULL, &x);CHKERRQ(ierr2);
816e735a8a9SMatthew G. Knepley           ierr2 = DMRestoreLocalVector(dm, &localX);CHKERRQ(ierr2);
8177318780aSToby Isaac           ierr2 = PetscFree6(localDiff,funcVal,interpolant,coords,detJ,J);CHKERRQ(ierr2);
818e735a8a9SMatthew G. Knepley           CHKERRQ(ierr);
819e735a8a9SMatthew G. Knepley         }
82015496722SMatthew G. Knepley         if (id == PETSCFE_CLASSID)      {ierr = PetscFEInterpolate_Static((PetscFE) obj, &x[fieldOffset], q, interpolant);CHKERRQ(ierr);}
82115496722SMatthew G. Knepley         else if (id == PETSCFV_CLASSID) {ierr = PetscFVInterpolate_Static((PetscFV) obj, &x[fieldOffset], q, interpolant);CHKERRQ(ierr);}
82215496722SMatthew G. Knepley         else SETERRQ1(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %d", field);
82315496722SMatthew G. Knepley         for (fc = 0; fc < Nc; ++fc) {
8247318780aSToby Isaac           if (debug) {ierr = PetscPrintf(PETSC_COMM_SELF, "    elem %d field %d point %g %g %g diff %g\n", c, field, coordDim > 0 ? coords[0] : 0., coordDim > 1 ? coords[1] : 0., coordDim > 2 ? coords[2] : 0., PetscSqr(PetscRealPart(interpolant[fc] - funcVal[fc]))*quadWeights[q]*detJ[q]);CHKERRQ(ierr);}
8257318780aSToby Isaac           elemDiff += PetscSqr(PetscRealPart(interpolant[fc] - funcVal[fc]))*quadWeights[q]*detJ[q];
82673d901b8SMatthew G. Knepley         }
82773d901b8SMatthew G. Knepley       }
82815496722SMatthew G. Knepley       fieldOffset += Nb*Nc;
82973d901b8SMatthew G. Knepley       localDiff[field] += elemDiff;
83073d901b8SMatthew G. Knepley     }
83173d901b8SMatthew G. Knepley     ierr = DMPlexVecRestoreClosure(dm, NULL, localX, c, NULL, &x);CHKERRQ(ierr);
83273d901b8SMatthew G. Knepley   }
83373d901b8SMatthew G. Knepley   ierr = DMRestoreLocalVector(dm, &localX);CHKERRQ(ierr);
834b2566f29SBarry Smith   ierr = MPIU_Allreduce(localDiff, diff, numFields, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)dm));CHKERRQ(ierr);
83573d901b8SMatthew G. Knepley   for (field = 0; field < numFields; ++field) diff[field] = PetscSqrtReal(diff[field]);
8367318780aSToby Isaac   ierr = PetscFree6(localDiff,funcVal,interpolant,coords,detJ,J);CHKERRQ(ierr);
83773d901b8SMatthew G. Knepley   PetscFunctionReturn(0);
83873d901b8SMatthew G. Knepley }
83973d901b8SMatthew G. Knepley 
840e729f68cSMatthew G. Knepley /*@C
841e729f68cSMatthew G. Knepley   DMPlexComputeL2DiffVec - This function computes the cellwise L_2 difference between a function u and an FEM interpolant solution u_h, and stores it in a Vec.
842e729f68cSMatthew G. Knepley 
843e729f68cSMatthew G. Knepley   Input Parameters:
844e729f68cSMatthew G. Knepley + dm    - The DM
8450163fd50SMatthew G. Knepley . time  - The time
846ca3eba1bSToby Isaac . funcs - The functions to evaluate for each field component: NULL means that component does not contribute to error calculation
847e729f68cSMatthew G. Knepley . ctxs  - Optional array of contexts to pass to each function, or NULL.
848e729f68cSMatthew G. Knepley - X     - The coefficient vector u_h
849e729f68cSMatthew G. Knepley 
850e729f68cSMatthew G. Knepley   Output Parameter:
851e729f68cSMatthew G. Knepley . D - A Vec which holds the difference ||u - u_h||_2 for each cell
852e729f68cSMatthew G. Knepley 
853e729f68cSMatthew G. Knepley   Level: developer
854e729f68cSMatthew G. Knepley 
855b698f381SToby Isaac .seealso: DMProjectFunction(), DMComputeL2Diff(), DMPlexComputeL2FieldDiff(), DMComputeL2GradientDiff()
856e729f68cSMatthew G. Knepley @*/
8570163fd50SMatthew G. Knepley PetscErrorCode DMPlexComputeL2DiffVec(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal [], PetscInt, PetscScalar *, void *), void **ctxs, Vec X, Vec D)
858e729f68cSMatthew G. Knepley {
859e729f68cSMatthew G. Knepley   PetscSection     section;
860e729f68cSMatthew G. Knepley   PetscQuadrature  quad;
861e729f68cSMatthew G. Knepley   Vec              localX;
862e729f68cSMatthew G. Knepley   PetscScalar     *funcVal, *interpolant;
8637318780aSToby Isaac   PetscReal       *coords, *detJ, *J;
864e729f68cSMatthew G. Knepley   const PetscReal *quadPoints, *quadWeights;
8657318780aSToby Isaac   PetscInt         dim, coordDim, numFields, numComponents = 0, Nq, cStart, cEnd, cEndInterior, c, field, fieldOffset;
866e729f68cSMatthew G. Knepley   PetscErrorCode   ierr;
867e729f68cSMatthew G. Knepley 
868e729f68cSMatthew G. Knepley   PetscFunctionBegin;
869e729f68cSMatthew G. Knepley   ierr = VecSet(D, 0.0);CHKERRQ(ierr);
870e729f68cSMatthew G. Knepley   ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr);
8717318780aSToby Isaac   ierr = DMGetCoordinateDim(dm, &coordDim);CHKERRQ(ierr);
872e729f68cSMatthew G. Knepley   ierr = DMGetDefaultSection(dm, &section);CHKERRQ(ierr);
873e729f68cSMatthew G. Knepley   ierr = PetscSectionGetNumFields(section, &numFields);CHKERRQ(ierr);
874e729f68cSMatthew G. Knepley   ierr = DMGetLocalVector(dm, &localX);CHKERRQ(ierr);
875bdd6f66aSToby Isaac   ierr = DMProjectFunctionLocal(dm, time, funcs, ctxs, INSERT_BC_VALUES, localX);CHKERRQ(ierr);
876e729f68cSMatthew G. Knepley   ierr = DMGlobalToLocalBegin(dm, X, INSERT_VALUES, localX);CHKERRQ(ierr);
877e729f68cSMatthew G. Knepley   ierr = DMGlobalToLocalEnd(dm, X, INSERT_VALUES, localX);CHKERRQ(ierr);
878e729f68cSMatthew G. Knepley   for (field = 0; field < numFields; ++field) {
879e729f68cSMatthew G. Knepley     PetscObject  obj;
880e729f68cSMatthew G. Knepley     PetscClassId id;
881e729f68cSMatthew G. Knepley     PetscInt     Nc;
882e729f68cSMatthew G. Knepley 
883e729f68cSMatthew G. Knepley     ierr = DMGetField(dm, field, &obj);CHKERRQ(ierr);
884e729f68cSMatthew G. Knepley     ierr = PetscObjectGetClassId(obj, &id);CHKERRQ(ierr);
885e729f68cSMatthew G. Knepley     if (id == PETSCFE_CLASSID) {
886e729f68cSMatthew G. Knepley       PetscFE fe = (PetscFE) obj;
887e729f68cSMatthew G. Knepley 
888e729f68cSMatthew G. Knepley       ierr = PetscFEGetQuadrature(fe, &quad);CHKERRQ(ierr);
889e729f68cSMatthew G. Knepley       ierr = PetscFEGetNumComponents(fe, &Nc);CHKERRQ(ierr);
890e729f68cSMatthew G. Knepley     } else if (id == PETSCFV_CLASSID) {
891e729f68cSMatthew G. Knepley       PetscFV fv = (PetscFV) obj;
892e729f68cSMatthew G. Knepley 
893e729f68cSMatthew G. Knepley       ierr = PetscFVGetQuadrature(fv, &quad);CHKERRQ(ierr);
894e729f68cSMatthew G. Knepley       ierr = PetscFVGetNumComponents(fv, &Nc);CHKERRQ(ierr);
895e729f68cSMatthew G. Knepley     } else SETERRQ1(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %d", field);
896e729f68cSMatthew G. Knepley     numComponents += Nc;
897e729f68cSMatthew G. Knepley   }
8987318780aSToby Isaac   ierr = PetscQuadratureGetData(quad, NULL, &Nq, &quadPoints, &quadWeights);CHKERRQ(ierr);
8997318780aSToby Isaac   ierr = PetscMalloc5(numComponents,&funcVal,numComponents,&interpolant,coordDim*Nq,&coords,Nq,&detJ,coordDim*coordDim*Nq,&J);CHKERRQ(ierr);
900e729f68cSMatthew G. Knepley   ierr = DMPlexGetHeightStratum(dm, 0, &cStart, &cEnd);CHKERRQ(ierr);
901e729f68cSMatthew G. Knepley   ierr = DMPlexGetHybridBounds(dm, &cEndInterior, NULL, NULL, NULL);CHKERRQ(ierr);
902e729f68cSMatthew G. Knepley   cEnd = cEndInterior < 0 ? cEnd : cEndInterior;
903e729f68cSMatthew G. Knepley   for (c = cStart; c < cEnd; ++c) {
904e729f68cSMatthew G. Knepley     PetscScalar *x = NULL;
9056f288a59SMatthew G. Knepley     PetscScalar  elemDiff = 0.0;
906e729f68cSMatthew G. Knepley 
9077318780aSToby Isaac     ierr = DMPlexComputeCellGeometryFEM(dm, c, quad, coords, J, NULL, detJ);CHKERRQ(ierr);
908e729f68cSMatthew G. Knepley     ierr = DMPlexVecGetClosure(dm, NULL, localX, c, NULL, &x);CHKERRQ(ierr);
909e729f68cSMatthew G. Knepley 
910e729f68cSMatthew G. Knepley     for (field = 0, fieldOffset = 0; field < numFields; ++field) {
911e729f68cSMatthew G. Knepley       PetscObject  obj;
912e729f68cSMatthew G. Knepley       PetscClassId id;
913e729f68cSMatthew G. Knepley       void * const ctx = ctxs ? ctxs[field] : NULL;
914e729f68cSMatthew G. Knepley       PetscInt     Nb, Nc, q, fc;
915e729f68cSMatthew G. Knepley 
916e729f68cSMatthew G. Knepley       ierr = DMGetField(dm, field, &obj);CHKERRQ(ierr);
917e729f68cSMatthew G. Knepley       ierr = PetscObjectGetClassId(obj, &id);CHKERRQ(ierr);
918e729f68cSMatthew G. Knepley       if (id == PETSCFE_CLASSID)      {ierr = PetscFEGetNumComponents((PetscFE) obj, &Nc);CHKERRQ(ierr);ierr = PetscFEGetDimension((PetscFE) obj, &Nb);CHKERRQ(ierr);}
919e729f68cSMatthew G. Knepley       else if (id == PETSCFV_CLASSID) {ierr = PetscFVGetNumComponents((PetscFV) obj, &Nc);CHKERRQ(ierr);Nb = 1;}
920e729f68cSMatthew G. Knepley       else SETERRQ1(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %d", field);
92123f34ed2SToby Isaac       if (funcs[field]) {
9227318780aSToby Isaac         for (q = 0; q < Nq; ++q) {
9237318780aSToby Isaac           if (detJ[q] <= 0.0) SETERRQ3(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Invalid determinant %g for element %D, quadrature points %D", detJ[q], c, q);
9247318780aSToby Isaac           ierr = (*funcs[field])(dim, time, &coords[q*coordDim], Nc, funcVal, ctx);
925e735a8a9SMatthew G. Knepley           if (ierr) {
926e735a8a9SMatthew G. Knepley             PetscErrorCode ierr2;
927e735a8a9SMatthew G. Knepley             ierr2 = DMPlexVecRestoreClosure(dm, NULL, localX, c, NULL, &x);CHKERRQ(ierr2);
9287318780aSToby Isaac             ierr2 = PetscFree5(funcVal,interpolant,coords,detJ,J);CHKERRQ(ierr);
929e735a8a9SMatthew G. Knepley             ierr2 = DMRestoreLocalVector(dm, &localX);CHKERRQ(ierr2);
930e735a8a9SMatthew G. Knepley             CHKERRQ(ierr);
931e735a8a9SMatthew G. Knepley           }
932e729f68cSMatthew G. Knepley           if (id == PETSCFE_CLASSID)      {ierr = PetscFEInterpolate_Static((PetscFE) obj, &x[fieldOffset], q, interpolant);CHKERRQ(ierr);}
933e729f68cSMatthew G. Knepley           else if (id == PETSCFV_CLASSID) {ierr = PetscFVInterpolate_Static((PetscFV) obj, &x[fieldOffset], q, interpolant);CHKERRQ(ierr);}
934e729f68cSMatthew G. Knepley           else SETERRQ1(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %d", field);
935e729f68cSMatthew G. Knepley           for (fc = 0; fc < Nc; ++fc) {
9367318780aSToby Isaac             elemDiff += PetscSqr(PetscRealPart(interpolant[fc] - funcVal[fc]))*quadWeights[q]*detJ[q];
937e729f68cSMatthew G. Knepley           }
938e729f68cSMatthew G. Knepley         }
93923f34ed2SToby Isaac       }
940e729f68cSMatthew G. Knepley       fieldOffset += Nb*Nc;
941e729f68cSMatthew G. Knepley     }
942e729f68cSMatthew G. Knepley     ierr = DMPlexVecRestoreClosure(dm, NULL, localX, c, NULL, &x);CHKERRQ(ierr);
94323f34ed2SToby Isaac     ierr = VecSetValue(D, c - cStart, elemDiff, INSERT_VALUES);CHKERRQ(ierr);
944e729f68cSMatthew G. Knepley   }
9457318780aSToby Isaac   ierr = PetscFree5(funcVal,interpolant,coords,detJ,J);CHKERRQ(ierr);
946e729f68cSMatthew G. Knepley   ierr = DMRestoreLocalVector(dm, &localX);CHKERRQ(ierr);
947e729f68cSMatthew G. Knepley   ierr = VecSqrtAbs(D);CHKERRQ(ierr);
948e729f68cSMatthew G. Knepley   PetscFunctionReturn(0);
949e729f68cSMatthew G. Knepley }
950e729f68cSMatthew G. Knepley 
95173d901b8SMatthew G. Knepley /*@
95273d901b8SMatthew G. Knepley   DMPlexComputeIntegralFEM - Form the local integral F from the local input X using pointwise functions specified by the user
95373d901b8SMatthew G. Knepley 
95473d901b8SMatthew G. Knepley   Input Parameters:
95573d901b8SMatthew G. Knepley + dm - The mesh
95673d901b8SMatthew G. Knepley . X  - Local input vector
95773d901b8SMatthew G. Knepley - user - The user context
95873d901b8SMatthew G. Knepley 
95973d901b8SMatthew G. Knepley   Output Parameter:
96073d901b8SMatthew G. Knepley . integral - Local integral for each field
96173d901b8SMatthew G. Knepley 
96273d901b8SMatthew G. Knepley   Level: developer
96373d901b8SMatthew G. Knepley 
96473d901b8SMatthew G. Knepley .seealso: DMPlexComputeResidualFEM()
96573d901b8SMatthew G. Knepley @*/
9660f2d7e86SMatthew G. Knepley PetscErrorCode DMPlexComputeIntegralFEM(DM dm, Vec X, PetscReal *integral, void *user)
96773d901b8SMatthew G. Knepley {
96873d901b8SMatthew G. Knepley   DM_Plex           *mesh  = (DM_Plex *) dm->data;
969b5a3613cSMatthew G. Knepley   DM                 dmAux, dmGrad;
970425f1808SMatthew G. Knepley   Vec                localX, A, cellGeometryFVM = NULL, faceGeometryFVM = NULL, locGrad = NULL;
9712764a2aaSMatthew G. Knepley   PetscDS            prob, probAux = NULL;
97273d901b8SMatthew G. Knepley   PetscSection       section, sectionAux;
973b5a3613cSMatthew G. Knepley   PetscFV            fvm = NULL;
974b5a3613cSMatthew G. Knepley   PetscFECellGeom   *cgeomFEM;
975b5a3613cSMatthew G. Knepley   PetscFVFaceGeom   *fgeomFVM;
976b5a3613cSMatthew G. Knepley   PetscFVCellGeom   *cgeomFVM;
97773d901b8SMatthew G. Knepley   PetscScalar       *u, *a = NULL;
978b5a3613cSMatthew G. Knepley   const PetscScalar *lgrad;
979b5a3613cSMatthew G. Knepley   PetscReal         *lintegral;
980b5a3613cSMatthew G. Knepley   PetscInt          *uOff, *uOff_x, *aOff = NULL;
981b5a3613cSMatthew G. Knepley   PetscInt           dim, Nf, NfAux = 0, f, numCells, cStart, cEnd, cEndInterior, c;
9820f2d7e86SMatthew G. Knepley   PetscInt           totDim, totDimAux;
983425f1808SMatthew G. Knepley   PetscBool          useFVM = PETSC_FALSE;
98473d901b8SMatthew G. Knepley   PetscErrorCode     ierr;
98573d901b8SMatthew G. Knepley 
98673d901b8SMatthew G. Knepley   PetscFunctionBegin;
987c1f031eeSMatthew G. Knepley   ierr = PetscLogEventBegin(DMPLEX_IntegralFEM,dm,0,0,0);CHKERRQ(ierr);
98873d901b8SMatthew G. Knepley   ierr = DMGetLocalVector(dm, &localX);CHKERRQ(ierr);
989bdd6f66aSToby Isaac   ierr = DMPlexInsertBoundaryValues(dm, PETSC_TRUE, localX, 0.0, NULL, NULL, NULL);CHKERRQ(ierr);
99073d901b8SMatthew G. Knepley   ierr = DMGlobalToLocalBegin(dm, X, INSERT_VALUES, localX);CHKERRQ(ierr);
99173d901b8SMatthew G. Knepley   ierr = DMGlobalToLocalEnd(dm, X, INSERT_VALUES, localX);CHKERRQ(ierr);
992c73cfb54SMatthew G. Knepley   ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr);
99373d901b8SMatthew G. Knepley   ierr = DMGetDefaultSection(dm, &section);CHKERRQ(ierr);
9942764a2aaSMatthew G. Knepley   ierr = DMGetDS(dm, &prob);CHKERRQ(ierr);
9952764a2aaSMatthew G. Knepley   ierr = PetscDSGetTotalDimension(prob, &totDim);CHKERRQ(ierr);
996b5a3613cSMatthew G. Knepley   ierr = PetscDSGetComponentOffsets(prob, &uOff);CHKERRQ(ierr);
997b5a3613cSMatthew G. Knepley   ierr = PetscDSGetComponentDerivativeOffsets(prob, &uOff_x);CHKERRQ(ierr);
99873d901b8SMatthew G. Knepley   ierr = PetscSectionGetNumFields(section, &Nf);CHKERRQ(ierr);
99973d901b8SMatthew G. Knepley   ierr = DMPlexGetHeightStratum(dm, 0, &cStart, &cEnd);CHKERRQ(ierr);
10009ac3fadcSMatthew G. Knepley   ierr = DMPlexGetHybridBounds(dm, &cEndInterior, NULL, NULL, NULL);CHKERRQ(ierr);
10019ac3fadcSMatthew G. Knepley   cEnd = cEndInterior < 0 ? cEnd : cEndInterior;
100273d901b8SMatthew G. Knepley   numCells = cEnd - cStart;
100373d901b8SMatthew G. Knepley   ierr = PetscObjectQuery((PetscObject) dm, "dmAux", (PetscObject *) &dmAux);CHKERRQ(ierr);
100473d901b8SMatthew G. Knepley   ierr = PetscObjectQuery((PetscObject) dm, "A", (PetscObject *) &A);CHKERRQ(ierr);
100573d901b8SMatthew G. Knepley   if (dmAux) {
10062764a2aaSMatthew G. Knepley     ierr = DMGetDS(dmAux, &probAux);CHKERRQ(ierr);
1007b5a3613cSMatthew G. Knepley     ierr = PetscDSGetNumFields(probAux, &NfAux);CHKERRQ(ierr);
1008b5a3613cSMatthew G. Knepley     ierr = DMGetDefaultSection(dmAux, &sectionAux);CHKERRQ(ierr);
10092764a2aaSMatthew G. Knepley     ierr = PetscDSGetTotalDimension(probAux, &totDimAux);CHKERRQ(ierr);
1010b5a3613cSMatthew G. Knepley     ierr = PetscDSGetComponentOffsets(probAux, &aOff);CHKERRQ(ierr);
1011b5a3613cSMatthew G. Knepley     ierr = PetscDSGetEvaluationArrays(probAux, &a, NULL, NULL);CHKERRQ(ierr);
101273d901b8SMatthew G. Knepley   }
1013b5a3613cSMatthew G. Knepley   for (f = 0; f < Nf; ++f) {
1014b5a3613cSMatthew G. Knepley     PetscObject  obj;
1015b5a3613cSMatthew G. Knepley     PetscClassId id;
1016b5a3613cSMatthew G. Knepley 
1017b5a3613cSMatthew G. Knepley     ierr = PetscDSGetDiscretization(prob, f, &obj);CHKERRQ(ierr);
1018b5a3613cSMatthew G. Knepley     ierr = PetscObjectGetClassId(obj, &id);CHKERRQ(ierr);
1019b5a3613cSMatthew G. Knepley     if (id == PETSCFV_CLASSID) {useFVM = PETSC_TRUE; fvm = (PetscFV) obj;}
1020b5a3613cSMatthew G. Knepley   }
1021b5a3613cSMatthew G. Knepley   if (useFVM) {
1022b5a3613cSMatthew G. Knepley     Vec       grad;
1023b5a3613cSMatthew G. Knepley     PetscInt  fStart, fEnd;
1024b5a3613cSMatthew G. Knepley     PetscBool compGrad;
1025b5a3613cSMatthew G. Knepley 
1026b5a3613cSMatthew G. Knepley     ierr = PetscFVGetComputeGradients(fvm, &compGrad);CHKERRQ(ierr);
1027b5a3613cSMatthew G. Knepley     ierr = PetscFVSetComputeGradients(fvm, PETSC_TRUE);CHKERRQ(ierr);
1028b5a3613cSMatthew G. Knepley     ierr = DMPlexComputeGeometryFVM(dm, &cellGeometryFVM, &faceGeometryFVM);CHKERRQ(ierr);
1029b5a3613cSMatthew G. Knepley     ierr = DMPlexComputeGradientFVM(dm, fvm, faceGeometryFVM, cellGeometryFVM, &dmGrad);CHKERRQ(ierr);
1030b5a3613cSMatthew G. Knepley     ierr = PetscFVSetComputeGradients(fvm, compGrad);CHKERRQ(ierr);
1031b5a3613cSMatthew G. Knepley     ierr = VecGetArrayRead(faceGeometryFVM, (const PetscScalar **) &fgeomFVM);CHKERRQ(ierr);
1032b5a3613cSMatthew G. Knepley     ierr = VecGetArrayRead(cellGeometryFVM, (const PetscScalar **) &cgeomFVM);CHKERRQ(ierr);
1033b5a3613cSMatthew G. Knepley     /* Reconstruct and limit cell gradients */
1034b5a3613cSMatthew G. Knepley     ierr = DMPlexGetHeightStratum(dm, 1, &fStart, &fEnd);CHKERRQ(ierr);
1035b5a3613cSMatthew G. Knepley     ierr = DMGetGlobalVector(dmGrad, &grad);CHKERRQ(ierr);
1036b5a3613cSMatthew G. Knepley     ierr = DMPlexReconstructGradients_Internal(dm, fvm, fStart, fEnd, faceGeometryFVM, cellGeometryFVM, localX, grad);CHKERRQ(ierr);
1037b5a3613cSMatthew G. Knepley     /* Communicate gradient values */
1038b5a3613cSMatthew G. Knepley     ierr = DMGetLocalVector(dmGrad, &locGrad);CHKERRQ(ierr);
1039b5a3613cSMatthew G. Knepley     ierr = DMGlobalToLocalBegin(dmGrad, grad, INSERT_VALUES, locGrad);CHKERRQ(ierr);
1040b5a3613cSMatthew G. Knepley     ierr = DMGlobalToLocalEnd(dmGrad, grad, INSERT_VALUES, locGrad);CHKERRQ(ierr);
1041b5a3613cSMatthew G. Knepley     ierr = DMRestoreGlobalVector(dmGrad, &grad);CHKERRQ(ierr);
1042b5a3613cSMatthew G. Knepley     /* Handle non-essential (e.g. outflow) boundary values */
1043b5a3613cSMatthew G. Knepley     ierr = DMPlexInsertBoundaryValues(dm, PETSC_FALSE, localX, 0.0, faceGeometryFVM, cellGeometryFVM, locGrad);CHKERRQ(ierr);
1044b5a3613cSMatthew G. Knepley     ierr = VecGetArrayRead(locGrad, &lgrad);CHKERRQ(ierr);
1045b5a3613cSMatthew G. Knepley   }
1046b5a3613cSMatthew G. Knepley   ierr = PetscMalloc3(Nf,&lintegral,numCells*totDim,&u,numCells,&cgeomFEM);CHKERRQ(ierr);
10470f2d7e86SMatthew G. Knepley   if (dmAux) {ierr = PetscMalloc1(numCells*totDimAux, &a);CHKERRQ(ierr);}
1048c1f031eeSMatthew G. Knepley   for (f = 0; f < Nf; ++f) {lintegral[f] = 0.0;}
104973d901b8SMatthew G. Knepley   for (c = cStart; c < cEnd; ++c) {
105073d901b8SMatthew G. Knepley     PetscScalar *x = NULL;
105173d901b8SMatthew G. Knepley     PetscInt     i;
105273d901b8SMatthew G. Knepley 
1053b5a3613cSMatthew G. Knepley     ierr = DMPlexComputeCellGeometryFEM(dm, c, NULL, cgeomFEM[c].v0, cgeomFEM[c].J, cgeomFEM[c].invJ, &cgeomFEM[c].detJ);CHKERRQ(ierr);
1054b5a3613cSMatthew G. Knepley     if (cgeomFEM[c].detJ <= 0.0) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Invalid determinant %g for element %d", cgeomFEM[c].detJ, c);
105573d901b8SMatthew G. Knepley     ierr = DMPlexVecGetClosure(dm, section, localX, c, NULL, &x);CHKERRQ(ierr);
10560f2d7e86SMatthew G. Knepley     for (i = 0; i < totDim; ++i) u[c*totDim+i] = x[i];
105773d901b8SMatthew G. Knepley     ierr = DMPlexVecRestoreClosure(dm, section, localX, c, NULL, &x);CHKERRQ(ierr);
105873d901b8SMatthew G. Knepley     if (dmAux) {
105973d901b8SMatthew G. Knepley       ierr = DMPlexVecGetClosure(dmAux, sectionAux, A, c, NULL, &x);CHKERRQ(ierr);
10600f2d7e86SMatthew G. Knepley       for (i = 0; i < totDimAux; ++i) a[c*totDimAux+i] = x[i];
106173d901b8SMatthew G. Knepley       ierr = DMPlexVecRestoreClosure(dmAux, sectionAux, A, c, NULL, &x);CHKERRQ(ierr);
106273d901b8SMatthew G. Knepley     }
106373d901b8SMatthew G. Knepley   }
106473d901b8SMatthew G. Knepley   for (f = 0; f < Nf; ++f) {
1065c1f031eeSMatthew G. Knepley     PetscObject  obj;
1066c1f031eeSMatthew G. Knepley     PetscClassId id;
1067c1f031eeSMatthew G. Knepley     PetscInt     numChunks, numBatches, batchSize, numBlocks, blockSize, Ne, Nr, offset;
106873d901b8SMatthew G. Knepley 
1069c1f031eeSMatthew G. Knepley     ierr = PetscDSGetDiscretization(prob, f, &obj);CHKERRQ(ierr);
1070c1f031eeSMatthew G. Knepley     ierr = PetscObjectGetClassId(obj, &id);CHKERRQ(ierr);
1071c1f031eeSMatthew G. Knepley     if (id == PETSCFE_CLASSID) {
1072c1f031eeSMatthew G. Knepley       PetscFE         fe = (PetscFE) obj;
1073c1f031eeSMatthew G. Knepley       PetscQuadrature q;
1074c1f031eeSMatthew G. Knepley       PetscInt        Nq, Nb;
1075c1f031eeSMatthew G. Knepley 
10760f2d7e86SMatthew G. Knepley       ierr = PetscFEGetTileSizes(fe, NULL, &numBlocks, NULL, &numBatches);CHKERRQ(ierr);
1077c1f031eeSMatthew G. Knepley       ierr = PetscFEGetQuadrature(fe, &q);CHKERRQ(ierr);
1078c1f031eeSMatthew G. Knepley       ierr = PetscQuadratureGetData(q, NULL, &Nq, NULL, NULL);CHKERRQ(ierr);
1079c1f031eeSMatthew G. Knepley       ierr = PetscFEGetDimension(fe, &Nb);CHKERRQ(ierr);
1080c1f031eeSMatthew G. Knepley       blockSize = Nb*Nq;
108173d901b8SMatthew G. Knepley       batchSize = numBlocks * blockSize;
10820f2d7e86SMatthew G. Knepley       ierr = PetscFESetTileSizes(fe, blockSize, numBlocks, batchSize, numBatches);CHKERRQ(ierr);
108373d901b8SMatthew G. Knepley       numChunks = numCells / (numBatches*batchSize);
108473d901b8SMatthew G. Knepley       Ne        = numChunks*numBatches*batchSize;
108573d901b8SMatthew G. Knepley       Nr        = numCells % (numBatches*batchSize);
108673d901b8SMatthew G. Knepley       offset    = numCells - Nr;
1087b5a3613cSMatthew G. Knepley       ierr = PetscFEIntegrate(fe, prob, f, Ne, cgeomFEM, u, probAux, a, lintegral);CHKERRQ(ierr);
1088b5a3613cSMatthew G. Knepley       ierr = PetscFEIntegrate(fe, prob, f, Nr, &cgeomFEM[offset], &u[offset*totDim], probAux, &a[offset*totDimAux], lintegral);CHKERRQ(ierr);
1089c1f031eeSMatthew G. Knepley     } else if (id == PETSCFV_CLASSID) {
1090b69edc29SMatthew G. Knepley       /* PetscFV  fv = (PetscFV) obj; */
1091c1f031eeSMatthew G. Knepley       PetscInt       foff;
1092420e96edSMatthew G. Knepley       PetscPointFunc obj_func;
1093b69edc29SMatthew G. Knepley       PetscScalar    lint;
1094c1f031eeSMatthew G. Knepley 
1095c1f031eeSMatthew G. Knepley       ierr = PetscDSGetObjective(prob, f, &obj_func);CHKERRQ(ierr);
1096c1f031eeSMatthew G. Knepley       ierr = PetscDSGetFieldOffset(prob, f, &foff);CHKERRQ(ierr);
1097c1f031eeSMatthew G. Knepley       if (obj_func) {
1098c1f031eeSMatthew G. Knepley         for (c = 0; c < numCells; ++c) {
1099b5a3613cSMatthew G. Knepley           PetscScalar *u_x;
1100b5a3613cSMatthew G. Knepley 
1101b5a3613cSMatthew G. Knepley           ierr = DMPlexPointLocalRead(dmGrad, c, lgrad, &u_x);CHKERRQ(ierr);
1102b5a3613cSMatthew G. Knepley           obj_func(dim, Nf, NfAux, uOff, uOff_x, &u[totDim*c+foff], NULL, u_x, aOff, NULL, a, NULL, NULL, 0.0, cgeomFVM[c].centroid, &lint);
1103b5a3613cSMatthew G. Knepley           lintegral[f] += PetscRealPart(lint)*cgeomFVM[c].volume;
110473d901b8SMatthew G. Knepley         }
1105c1f031eeSMatthew G. Knepley       }
1106c1f031eeSMatthew G. Knepley     } else SETERRQ1(PetscObjectComm((PetscObject) dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %d", f);
1107c1f031eeSMatthew G. Knepley   }
1108b5a3613cSMatthew G. Knepley   if (useFVM) {
1109b5a3613cSMatthew G. Knepley     ierr = VecRestoreArrayRead(locGrad, &lgrad);CHKERRQ(ierr);
1110b5a3613cSMatthew G. Knepley     ierr = VecRestoreArrayRead(faceGeometryFVM, (const PetscScalar **) &fgeomFVM);CHKERRQ(ierr);
1111b5a3613cSMatthew G. Knepley     ierr = VecRestoreArrayRead(cellGeometryFVM, (const PetscScalar **) &cgeomFVM);CHKERRQ(ierr);
1112b5a3613cSMatthew G. Knepley     ierr = DMRestoreLocalVector(dmGrad, &locGrad);CHKERRQ(ierr);
1113b5a3613cSMatthew G. Knepley     ierr = VecDestroy(&faceGeometryFVM);CHKERRQ(ierr);
1114b5a3613cSMatthew G. Knepley     ierr = VecDestroy(&cellGeometryFVM);CHKERRQ(ierr);
1115b5a3613cSMatthew G. Knepley     ierr = DMDestroy(&dmGrad);CHKERRQ(ierr);
1116b5a3613cSMatthew G. Knepley   }
111773d901b8SMatthew G. Knepley   if (dmAux) {ierr = PetscFree(a);CHKERRQ(ierr);}
111873d901b8SMatthew G. Knepley   if (mesh->printFEM) {
111973d901b8SMatthew G. Knepley     ierr = PetscPrintf(PetscObjectComm((PetscObject) dm), "Local integral:");CHKERRQ(ierr);
1120c1f031eeSMatthew G. Knepley     for (f = 0; f < Nf; ++f) {ierr = PetscPrintf(PetscObjectComm((PetscObject) dm), " %g", lintegral[f]);CHKERRQ(ierr);}
112173d901b8SMatthew G. Knepley     ierr = PetscPrintf(PetscObjectComm((PetscObject) dm), "\n");CHKERRQ(ierr);
112273d901b8SMatthew G. Knepley   }
112373d901b8SMatthew G. Knepley   ierr = DMRestoreLocalVector(dm, &localX);CHKERRQ(ierr);
1124b2566f29SBarry Smith   ierr = MPIU_Allreduce(lintegral, integral, Nf, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject) dm));CHKERRQ(ierr);
1125b5a3613cSMatthew G. Knepley   ierr = PetscFree3(lintegral,u,cgeomFEM);CHKERRQ(ierr);
1126c1f031eeSMatthew G. Knepley   ierr = PetscLogEventEnd(DMPLEX_IntegralFEM,dm,0,0,0);CHKERRQ(ierr);
112773d901b8SMatthew G. Knepley   PetscFunctionReturn(0);
112873d901b8SMatthew G. Knepley }
112973d901b8SMatthew G. Knepley 
1130d69c5d34SMatthew G. Knepley /*@
113168132eb9SMatthew G. Knepley   DMPlexComputeInterpolatorNested - Form the local portion of the interpolation matrix I from the coarse DM to the uniformly refined DM.
1132d69c5d34SMatthew G. Knepley 
1133d69c5d34SMatthew G. Knepley   Input Parameters:
1134d69c5d34SMatthew G. Knepley + dmf  - The fine mesh
1135d69c5d34SMatthew G. Knepley . dmc  - The coarse mesh
1136d69c5d34SMatthew G. Knepley - user - The user context
1137d69c5d34SMatthew G. Knepley 
1138d69c5d34SMatthew G. Knepley   Output Parameter:
1139934789fcSMatthew G. Knepley . In  - The interpolation matrix
1140d69c5d34SMatthew G. Knepley 
1141d69c5d34SMatthew G. Knepley   Level: developer
1142d69c5d34SMatthew G. Knepley 
114368132eb9SMatthew G. Knepley .seealso: DMPlexComputeInterpolatorGeneral(), DMPlexComputeJacobianFEM()
1144d69c5d34SMatthew G. Knepley @*/
114568132eb9SMatthew G. Knepley PetscErrorCode DMPlexComputeInterpolatorNested(DM dmc, DM dmf, Mat In, void *user)
1146d69c5d34SMatthew G. Knepley {
1147d69c5d34SMatthew G. Knepley   DM_Plex          *mesh  = (DM_Plex *) dmc->data;
1148d69c5d34SMatthew G. Knepley   const char       *name  = "Interpolator";
11492764a2aaSMatthew G. Knepley   PetscDS           prob;
1150d69c5d34SMatthew G. Knepley   PetscFE          *feRef;
115197c42addSMatthew G. Knepley   PetscFV          *fvRef;
1152d69c5d34SMatthew G. Knepley   PetscSection      fsection, fglobalSection;
1153d69c5d34SMatthew G. Knepley   PetscSection      csection, cglobalSection;
1154d69c5d34SMatthew G. Knepley   PetscScalar      *elemMat;
11559ac3fadcSMatthew G. Knepley   PetscInt          dim, Nf, f, fieldI, fieldJ, offsetI, offsetJ, cStart, cEnd, cEndInterior, c;
11560f2d7e86SMatthew G. Knepley   PetscInt          cTotDim, rTotDim = 0;
1157d69c5d34SMatthew G. Knepley   PetscErrorCode    ierr;
1158d69c5d34SMatthew G. Knepley 
1159d69c5d34SMatthew G. Knepley   PetscFunctionBegin;
1160d69c5d34SMatthew G. Knepley   ierr = PetscLogEventBegin(DMPLEX_InterpolatorFEM,dmc,dmf,0,0);CHKERRQ(ierr);
1161c73cfb54SMatthew G. Knepley   ierr = DMGetDimension(dmf, &dim);CHKERRQ(ierr);
1162d69c5d34SMatthew G. Knepley   ierr = DMGetDefaultSection(dmf, &fsection);CHKERRQ(ierr);
1163d69c5d34SMatthew G. Knepley   ierr = DMGetDefaultGlobalSection(dmf, &fglobalSection);CHKERRQ(ierr);
1164d69c5d34SMatthew G. Knepley   ierr = DMGetDefaultSection(dmc, &csection);CHKERRQ(ierr);
1165d69c5d34SMatthew G. Knepley   ierr = DMGetDefaultGlobalSection(dmc, &cglobalSection);CHKERRQ(ierr);
1166d69c5d34SMatthew G. Knepley   ierr = PetscSectionGetNumFields(fsection, &Nf);CHKERRQ(ierr);
1167d69c5d34SMatthew G. Knepley   ierr = DMPlexGetHeightStratum(dmc, 0, &cStart, &cEnd);CHKERRQ(ierr);
11689ac3fadcSMatthew G. Knepley   ierr = DMPlexGetHybridBounds(dmc, &cEndInterior, NULL, NULL, NULL);CHKERRQ(ierr);
11699ac3fadcSMatthew G. Knepley   cEnd = cEndInterior < 0 ? cEnd : cEndInterior;
11702764a2aaSMatthew G. Knepley   ierr = DMGetDS(dmf, &prob);CHKERRQ(ierr);
117197c42addSMatthew G. Knepley   ierr = PetscCalloc2(Nf,&feRef,Nf,&fvRef);CHKERRQ(ierr);
1172d69c5d34SMatthew G. Knepley   for (f = 0; f < Nf; ++f) {
117397c42addSMatthew G. Knepley     PetscObject  obj;
117497c42addSMatthew G. Knepley     PetscClassId id;
1175aa7890ccSMatthew G. Knepley     PetscInt     rNb = 0, Nc = 0;
1176d69c5d34SMatthew G. Knepley 
117797c42addSMatthew G. Knepley     ierr = PetscDSGetDiscretization(prob, f, &obj);CHKERRQ(ierr);
117897c42addSMatthew G. Knepley     ierr = PetscObjectGetClassId(obj, &id);CHKERRQ(ierr);
117997c42addSMatthew G. Knepley     if (id == PETSCFE_CLASSID) {
118097c42addSMatthew G. Knepley       PetscFE fe = (PetscFE) obj;
118197c42addSMatthew G. Knepley 
11820f2d7e86SMatthew G. Knepley       ierr = PetscFERefine(fe, &feRef[f]);CHKERRQ(ierr);
1183d69c5d34SMatthew G. Knepley       ierr = PetscFEGetDimension(feRef[f], &rNb);CHKERRQ(ierr);
11840f2d7e86SMatthew G. Knepley       ierr = PetscFEGetNumComponents(fe, &Nc);CHKERRQ(ierr);
118597c42addSMatthew G. Knepley     } else if (id == PETSCFV_CLASSID) {
118697c42addSMatthew G. Knepley       PetscFV        fv = (PetscFV) obj;
118797c42addSMatthew G. Knepley       PetscDualSpace Q;
118897c42addSMatthew G. Knepley 
118997c42addSMatthew G. Knepley       ierr = PetscFVRefine(fv, &fvRef[f]);CHKERRQ(ierr);
119097c42addSMatthew G. Knepley       ierr = PetscFVGetDualSpace(fvRef[f], &Q);CHKERRQ(ierr);
119197c42addSMatthew G. Knepley       ierr = PetscDualSpaceGetDimension(Q, &rNb);CHKERRQ(ierr);
119297c42addSMatthew G. Knepley       ierr = PetscFVGetNumComponents(fv, &Nc);CHKERRQ(ierr);
119397c42addSMatthew G. Knepley     }
11940f2d7e86SMatthew G. Knepley     rTotDim += rNb*Nc;
1195d69c5d34SMatthew G. Knepley   }
11962764a2aaSMatthew G. Knepley   ierr = PetscDSGetTotalDimension(prob, &cTotDim);CHKERRQ(ierr);
11970f2d7e86SMatthew G. Knepley   ierr = PetscMalloc1(rTotDim*cTotDim,&elemMat);CHKERRQ(ierr);
11980f2d7e86SMatthew G. Knepley   ierr = PetscMemzero(elemMat, rTotDim*cTotDim * sizeof(PetscScalar));CHKERRQ(ierr);
1199d69c5d34SMatthew G. Knepley   for (fieldI = 0, offsetI = 0; fieldI < Nf; ++fieldI) {
1200d69c5d34SMatthew G. Knepley     PetscDualSpace   Qref;
1201d69c5d34SMatthew G. Knepley     PetscQuadrature  f;
1202d69c5d34SMatthew G. Knepley     const PetscReal *qpoints, *qweights;
1203d69c5d34SMatthew G. Knepley     PetscReal       *points;
1204d69c5d34SMatthew G. Knepley     PetscInt         npoints = 0, Nc, Np, fpdim, i, k, p, d;
1205d69c5d34SMatthew G. Knepley 
1206d69c5d34SMatthew G. Knepley     /* Compose points from all dual basis functionals */
120797c42addSMatthew G. Knepley     if (feRef[fieldI]) {
1208d69c5d34SMatthew G. Knepley       ierr = PetscFEGetDualSpace(feRef[fieldI], &Qref);CHKERRQ(ierr);
12090f2d7e86SMatthew G. Knepley       ierr = PetscFEGetNumComponents(feRef[fieldI], &Nc);CHKERRQ(ierr);
121097c42addSMatthew G. Knepley     } else {
121197c42addSMatthew G. Knepley       ierr = PetscFVGetDualSpace(fvRef[fieldI], &Qref);CHKERRQ(ierr);
121297c42addSMatthew G. Knepley       ierr = PetscFVGetNumComponents(fvRef[fieldI], &Nc);CHKERRQ(ierr);
121397c42addSMatthew G. Knepley     }
1214d69c5d34SMatthew G. Knepley     ierr = PetscDualSpaceGetDimension(Qref, &fpdim);CHKERRQ(ierr);
1215d69c5d34SMatthew G. Knepley     for (i = 0; i < fpdim; ++i) {
1216d69c5d34SMatthew G. Knepley       ierr = PetscDualSpaceGetFunctional(Qref, i, &f);CHKERRQ(ierr);
1217d69c5d34SMatthew G. Knepley       ierr = PetscQuadratureGetData(f, NULL, &Np, NULL, NULL);CHKERRQ(ierr);
1218d69c5d34SMatthew G. Knepley       npoints += Np;
1219d69c5d34SMatthew G. Knepley     }
1220d69c5d34SMatthew G. Knepley     ierr = PetscMalloc1(npoints*dim,&points);CHKERRQ(ierr);
1221d69c5d34SMatthew G. Knepley     for (i = 0, k = 0; i < fpdim; ++i) {
1222d69c5d34SMatthew G. Knepley       ierr = PetscDualSpaceGetFunctional(Qref, i, &f);CHKERRQ(ierr);
1223d69c5d34SMatthew G. Knepley       ierr = PetscQuadratureGetData(f, NULL, &Np, &qpoints, NULL);CHKERRQ(ierr);
1224d69c5d34SMatthew G. Knepley       for (p = 0; p < Np; ++p, ++k) for (d = 0; d < dim; ++d) points[k*dim+d] = qpoints[p*dim+d];
1225d69c5d34SMatthew G. Knepley     }
1226d69c5d34SMatthew G. Knepley 
1227d69c5d34SMatthew G. Knepley     for (fieldJ = 0, offsetJ = 0; fieldJ < Nf; ++fieldJ) {
122897c42addSMatthew G. Knepley       PetscObject  obj;
122997c42addSMatthew G. Knepley       PetscClassId id;
1230d69c5d34SMatthew G. Knepley       PetscReal   *B;
1231aa7890ccSMatthew G. Knepley       PetscInt     NcJ = 0, cpdim = 0, j;
1232d69c5d34SMatthew G. Knepley 
123397c42addSMatthew G. Knepley       ierr = PetscDSGetDiscretization(prob, fieldJ, &obj);CHKERRQ(ierr);
123497c42addSMatthew G. Knepley       ierr = PetscObjectGetClassId(obj, &id);CHKERRQ(ierr);
123597c42addSMatthew G. Knepley       if (id == PETSCFE_CLASSID) {
123697c42addSMatthew G. Knepley         PetscFE fe = (PetscFE) obj;
1237d69c5d34SMatthew G. Knepley 
1238d69c5d34SMatthew G. Knepley         /* Evaluate basis at points */
12390f2d7e86SMatthew G. Knepley         ierr = PetscFEGetNumComponents(fe, &NcJ);CHKERRQ(ierr);
12400f2d7e86SMatthew G. Knepley         ierr = PetscFEGetDimension(fe, &cpdim);CHKERRQ(ierr);
1241ffe73a53SMatthew G. Knepley         /* For now, fields only interpolate themselves */
1242ffe73a53SMatthew G. Knepley         if (fieldI == fieldJ) {
12437c927364SMatthew G. Knepley           if (Nc != NcJ) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of components in fine space field %d does not match coarse field %d", Nc, NcJ);
12440f2d7e86SMatthew G. Knepley           ierr = PetscFEGetTabulation(fe, npoints, points, &B, NULL, NULL);CHKERRQ(ierr);
1245d69c5d34SMatthew G. Knepley           for (i = 0, k = 0; i < fpdim; ++i) {
1246d69c5d34SMatthew G. Knepley             ierr = PetscDualSpaceGetFunctional(Qref, i, &f);CHKERRQ(ierr);
1247d69c5d34SMatthew G. Knepley             ierr = PetscQuadratureGetData(f, NULL, &Np, NULL, &qweights);CHKERRQ(ierr);
1248d69c5d34SMatthew G. Knepley             for (p = 0; p < Np; ++p, ++k) {
124936a6d9c0SMatthew G. Knepley               for (j = 0; j < cpdim; ++j) {
12500f2d7e86SMatthew G. Knepley                 for (c = 0; c < Nc; ++c) elemMat[(offsetI + i*Nc + c)*cTotDim + offsetJ + j*NcJ + c] += B[k*cpdim*NcJ+j*Nc+c]*qweights[p];
125136a6d9c0SMatthew G. Knepley               }
1252d69c5d34SMatthew G. Knepley             }
1253d69c5d34SMatthew G. Knepley           }
12540f2d7e86SMatthew G. Knepley           ierr = PetscFERestoreTabulation(fe, npoints, points, &B, NULL, NULL);CHKERRQ(ierr);CHKERRQ(ierr);
1255ffe73a53SMatthew G. Knepley         }
125697c42addSMatthew G. Knepley       } else if (id == PETSCFV_CLASSID) {
125797c42addSMatthew G. Knepley         PetscFV        fv = (PetscFV) obj;
125897c42addSMatthew G. Knepley 
125997c42addSMatthew G. Knepley         /* Evaluate constant function at points */
126097c42addSMatthew G. Knepley         ierr = PetscFVGetNumComponents(fv, &NcJ);CHKERRQ(ierr);
126197c42addSMatthew G. Knepley         cpdim = 1;
126297c42addSMatthew G. Knepley         /* For now, fields only interpolate themselves */
126397c42addSMatthew G. Knepley         if (fieldI == fieldJ) {
126497c42addSMatthew G. Knepley           if (Nc != NcJ) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of components in fine space field %d does not match coarse field %d", Nc, NcJ);
126597c42addSMatthew G. Knepley           for (i = 0, k = 0; i < fpdim; ++i) {
126697c42addSMatthew G. Knepley             ierr = PetscDualSpaceGetFunctional(Qref, i, &f);CHKERRQ(ierr);
126797c42addSMatthew G. Knepley             ierr = PetscQuadratureGetData(f, NULL, &Np, NULL, &qweights);CHKERRQ(ierr);
126897c42addSMatthew G. Knepley             for (p = 0; p < Np; ++p, ++k) {
126997c42addSMatthew G. Knepley               for (j = 0; j < cpdim; ++j) {
127097c42addSMatthew G. Knepley                 for (c = 0; c < Nc; ++c) elemMat[(offsetI + i*Nc + c)*cTotDim + offsetJ + j*NcJ + c] += 1.0*qweights[p];
127197c42addSMatthew G. Knepley               }
127297c42addSMatthew G. Knepley             }
127397c42addSMatthew G. Knepley           }
127497c42addSMatthew G. Knepley         }
127597c42addSMatthew G. Knepley       }
127636a6d9c0SMatthew G. Knepley       offsetJ += cpdim*NcJ;
1277d69c5d34SMatthew G. Knepley     }
1278d69c5d34SMatthew G. Knepley     offsetI += fpdim*Nc;
1279549a8adaSMatthew G. Knepley     ierr = PetscFree(points);CHKERRQ(ierr);
1280d69c5d34SMatthew G. Knepley   }
12810f2d7e86SMatthew G. Knepley   if (mesh->printFEM > 1) {ierr = DMPrintCellMatrix(0, name, rTotDim, cTotDim, elemMat);CHKERRQ(ierr);}
12827f5b169aSMatthew G. Knepley   /* Preallocate matrix */
12837f5b169aSMatthew G. Knepley   {
1284c094ef40SMatthew G. Knepley     Mat          preallocator;
1285c094ef40SMatthew G. Knepley     PetscScalar *vals;
1286c094ef40SMatthew G. Knepley     PetscInt    *cellCIndices, *cellFIndices;
1287c094ef40SMatthew G. Knepley     PetscInt     locRows, locCols, cell;
12887f5b169aSMatthew G. Knepley 
1289c094ef40SMatthew G. Knepley     ierr = MatGetLocalSize(In, &locRows, &locCols);CHKERRQ(ierr);
1290c094ef40SMatthew G. Knepley     ierr = MatCreate(PetscObjectComm((PetscObject) In), &preallocator);CHKERRQ(ierr);
1291c094ef40SMatthew G. Knepley     ierr = MatSetType(preallocator, MATPREALLOCATOR);CHKERRQ(ierr);
1292c094ef40SMatthew G. Knepley     ierr = MatSetSizes(preallocator, locRows, locCols, PETSC_DETERMINE, PETSC_DETERMINE);CHKERRQ(ierr);
1293c094ef40SMatthew G. Knepley     ierr = MatSetUp(preallocator);CHKERRQ(ierr);
1294c094ef40SMatthew G. Knepley     ierr = PetscCalloc3(rTotDim*cTotDim, &vals,cTotDim,&cellCIndices,rTotDim,&cellFIndices);CHKERRQ(ierr);
12957f5b169aSMatthew G. Knepley     for (cell = cStart; cell < cEnd; ++cell) {
12967f5b169aSMatthew G. Knepley       ierr = DMPlexMatGetClosureIndicesRefined(dmf, fsection, fglobalSection, dmc, csection, cglobalSection, cell, cellCIndices, cellFIndices);CHKERRQ(ierr);
1297c094ef40SMatthew G. Knepley       ierr = MatSetValues(preallocator, rTotDim, cellFIndices, cTotDim, cellCIndices, vals, INSERT_VALUES);CHKERRQ(ierr);
12987f5b169aSMatthew G. Knepley     }
1299c094ef40SMatthew G. Knepley     ierr = PetscFree3(vals,cellCIndices,cellFIndices);CHKERRQ(ierr);
1300c094ef40SMatthew G. Knepley     ierr = MatAssemblyBegin(preallocator, MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
1301c094ef40SMatthew G. Knepley     ierr = MatAssemblyEnd(preallocator, MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
1302c094ef40SMatthew G. Knepley     ierr = MatPreallocatorPreallocate(preallocator, PETSC_TRUE, In);CHKERRQ(ierr);
1303c094ef40SMatthew G. Knepley     ierr = MatDestroy(&preallocator);CHKERRQ(ierr);
13047f5b169aSMatthew G. Knepley   }
13057f5b169aSMatthew G. Knepley   /* Fill matrix */
13067f5b169aSMatthew G. Knepley   ierr = MatZeroEntries(In);CHKERRQ(ierr);
1307d69c5d34SMatthew G. Knepley   for (c = cStart; c < cEnd; ++c) {
1308934789fcSMatthew G. Knepley     ierr = DMPlexMatSetClosureRefined(dmf, fsection, fglobalSection, dmc, csection, cglobalSection, In, c, elemMat, INSERT_VALUES);CHKERRQ(ierr);
1309d69c5d34SMatthew G. Knepley   }
1310549a8adaSMatthew G. Knepley   for (f = 0; f < Nf; ++f) {ierr = PetscFEDestroy(&feRef[f]);CHKERRQ(ierr);}
131197c42addSMatthew G. Knepley   ierr = PetscFree2(feRef,fvRef);CHKERRQ(ierr);
1312549a8adaSMatthew G. Knepley   ierr = PetscFree(elemMat);CHKERRQ(ierr);
1313934789fcSMatthew G. Knepley   ierr = MatAssemblyBegin(In, MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
1314934789fcSMatthew G. Knepley   ierr = MatAssemblyEnd(In, MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
1315d69c5d34SMatthew G. Knepley   if (mesh->printFEM) {
1316d69c5d34SMatthew G. Knepley     ierr = PetscPrintf(PETSC_COMM_WORLD, "%s:\n", name);CHKERRQ(ierr);
1317934789fcSMatthew G. Knepley     ierr = MatChop(In, 1.0e-10);CHKERRQ(ierr);
1318934789fcSMatthew G. Knepley     ierr = MatView(In, PETSC_VIEWER_STDOUT_WORLD);CHKERRQ(ierr);
1319d69c5d34SMatthew G. Knepley   }
1320d69c5d34SMatthew G. Knepley   ierr = PetscLogEventEnd(DMPLEX_InterpolatorFEM,dmc,dmf,0,0);CHKERRQ(ierr);
1321d69c5d34SMatthew G. Knepley   PetscFunctionReturn(0);
1322d69c5d34SMatthew G. Knepley }
13236c73c22cSMatthew G. Knepley 
132468132eb9SMatthew G. Knepley /*@
132568132eb9SMatthew G. Knepley   DMPlexComputeInterpolatorGeneral - Form the local portion of the interpolation matrix I from the coarse DM to a non-nested fine DM.
132668132eb9SMatthew G. Knepley 
132768132eb9SMatthew G. Knepley   Input Parameters:
132868132eb9SMatthew G. Knepley + dmf  - The fine mesh
132968132eb9SMatthew G. Knepley . dmc  - The coarse mesh
133068132eb9SMatthew G. Knepley - user - The user context
133168132eb9SMatthew G. Knepley 
133268132eb9SMatthew G. Knepley   Output Parameter:
133368132eb9SMatthew G. Knepley . In  - The interpolation matrix
133468132eb9SMatthew G. Knepley 
133568132eb9SMatthew G. Knepley   Level: developer
133668132eb9SMatthew G. Knepley 
133768132eb9SMatthew G. Knepley .seealso: DMPlexComputeInterpolatorNested(), DMPlexComputeJacobianFEM()
133868132eb9SMatthew G. Knepley @*/
133968132eb9SMatthew G. Knepley PetscErrorCode DMPlexComputeInterpolatorGeneral(DM dmc, DM dmf, Mat In, void *user)
13404ef9d792SMatthew G. Knepley {
134164e98e1dSMatthew G. Knepley   DM_Plex       *mesh = (DM_Plex *) dmf->data;
134264e98e1dSMatthew G. Knepley   const char    *name = "Interpolator";
13434ef9d792SMatthew G. Knepley   PetscDS        prob;
13444ef9d792SMatthew G. Knepley   PetscSection   fsection, csection, globalFSection, globalCSection;
13454ef9d792SMatthew G. Knepley   PetscHashJK    ht;
13464ef9d792SMatthew G. Knepley   PetscLayout    rLayout;
13474ef9d792SMatthew G. Knepley   PetscInt      *dnz, *onz;
13484ef9d792SMatthew G. Knepley   PetscInt       locRows, rStart, rEnd;
13494ef9d792SMatthew G. Knepley   PetscReal     *x, *v0, *J, *invJ, detJ;
13504ef9d792SMatthew G. Knepley   PetscReal     *v0c, *Jc, *invJc, detJc;
13514ef9d792SMatthew G. Knepley   PetscScalar   *elemMat;
13524ef9d792SMatthew G. Knepley   PetscInt       dim, Nf, field, totDim, cStart, cEnd, cell, ccell;
13534ef9d792SMatthew G. Knepley   PetscErrorCode ierr;
13544ef9d792SMatthew G. Knepley 
13554ef9d792SMatthew G. Knepley   PetscFunctionBegin;
135677711781SMatthew G. Knepley   ierr = PetscLogEventBegin(DMPLEX_InterpolatorFEM,dmc,dmf,0,0);CHKERRQ(ierr);
13574ef9d792SMatthew G. Knepley   ierr = DMGetCoordinateDim(dmc, &dim);CHKERRQ(ierr);
13584ef9d792SMatthew G. Knepley   ierr = DMGetDS(dmc, &prob);CHKERRQ(ierr);
13594ef9d792SMatthew G. Knepley   ierr = PetscDSGetRefCoordArrays(prob, &x, NULL);CHKERRQ(ierr);
13604ef9d792SMatthew G. Knepley   ierr = PetscDSGetNumFields(prob, &Nf);CHKERRQ(ierr);
13614ef9d792SMatthew G. Knepley   ierr = PetscMalloc3(dim,&v0,dim*dim,&J,dim*dim,&invJ);CHKERRQ(ierr);
13624ef9d792SMatthew G. Knepley   ierr = PetscMalloc3(dim,&v0c,dim*dim,&Jc,dim*dim,&invJc);CHKERRQ(ierr);
13634ef9d792SMatthew G. Knepley   ierr = DMGetDefaultSection(dmf, &fsection);CHKERRQ(ierr);
13644ef9d792SMatthew G. Knepley   ierr = DMGetDefaultGlobalSection(dmf, &globalFSection);CHKERRQ(ierr);
13654ef9d792SMatthew G. Knepley   ierr = DMGetDefaultSection(dmc, &csection);CHKERRQ(ierr);
13664ef9d792SMatthew G. Knepley   ierr = DMGetDefaultGlobalSection(dmc, &globalCSection);CHKERRQ(ierr);
13674ef9d792SMatthew G. Knepley   ierr = DMPlexGetHeightStratum(dmf, 0, &cStart, &cEnd);CHKERRQ(ierr);
13684ef9d792SMatthew G. Knepley   ierr = PetscDSGetTotalDimension(prob, &totDim);CHKERRQ(ierr);
13694ef9d792SMatthew G. Knepley   ierr = PetscMalloc1(totDim*totDim, &elemMat);CHKERRQ(ierr);
13704ef9d792SMatthew G. Knepley 
13714ef9d792SMatthew G. Knepley   ierr = MatGetLocalSize(In, &locRows, NULL);CHKERRQ(ierr);
13724ef9d792SMatthew G. Knepley   ierr = PetscLayoutCreate(PetscObjectComm((PetscObject) In), &rLayout);CHKERRQ(ierr);
13734ef9d792SMatthew G. Knepley   ierr = PetscLayoutSetLocalSize(rLayout, locRows);CHKERRQ(ierr);
13744ef9d792SMatthew G. Knepley   ierr = PetscLayoutSetBlockSize(rLayout, 1);CHKERRQ(ierr);
13754ef9d792SMatthew G. Knepley   ierr = PetscLayoutSetUp(rLayout);CHKERRQ(ierr);
13764ef9d792SMatthew G. Knepley   ierr = PetscLayoutGetRange(rLayout, &rStart, &rEnd);CHKERRQ(ierr);
13774ef9d792SMatthew G. Knepley   ierr = PetscLayoutDestroy(&rLayout);CHKERRQ(ierr);
13784ef9d792SMatthew G. Knepley   ierr = PetscCalloc2(locRows,&dnz,locRows,&onz);CHKERRQ(ierr);
13794ef9d792SMatthew G. Knepley   ierr = PetscHashJKCreate(&ht);CHKERRQ(ierr);
13804ef9d792SMatthew G. Knepley   for (field = 0; field < Nf; ++field) {
13814ef9d792SMatthew G. Knepley     PetscObject      obj;
13824ef9d792SMatthew G. Knepley     PetscClassId     id;
1383c0d7054bSMatthew G. Knepley     PetscDualSpace   Q = NULL;
13844ef9d792SMatthew G. Knepley     PetscQuadrature  f;
138517f047d8SMatthew G. Knepley     const PetscReal *qpoints;
138617f047d8SMatthew G. Knepley     PetscInt         Nc, Np, fpdim, i, d;
13874ef9d792SMatthew G. Knepley 
13884ef9d792SMatthew G. Knepley     ierr = PetscDSGetDiscretization(prob, field, &obj);CHKERRQ(ierr);
13894ef9d792SMatthew G. Knepley     ierr = PetscObjectGetClassId(obj, &id);CHKERRQ(ierr);
13904ef9d792SMatthew G. Knepley     if (id == PETSCFE_CLASSID) {
13914ef9d792SMatthew G. Knepley       PetscFE fe = (PetscFE) obj;
13924ef9d792SMatthew G. Knepley 
13934ef9d792SMatthew G. Knepley       ierr = PetscFEGetDualSpace(fe, &Q);CHKERRQ(ierr);
13944ef9d792SMatthew G. Knepley       ierr = PetscFEGetNumComponents(fe, &Nc);CHKERRQ(ierr);
13954ef9d792SMatthew G. Knepley     } else if (id == PETSCFV_CLASSID) {
13964ef9d792SMatthew G. Knepley       PetscFV fv = (PetscFV) obj;
13974ef9d792SMatthew G. Knepley 
13984ef9d792SMatthew G. Knepley       ierr = PetscFVGetDualSpace(fv, &Q);CHKERRQ(ierr);
13994ef9d792SMatthew G. Knepley       Nc   = 1;
14004ef9d792SMatthew G. Knepley     }
14014ef9d792SMatthew G. Knepley     ierr = PetscDualSpaceGetDimension(Q, &fpdim);CHKERRQ(ierr);
14024ef9d792SMatthew G. Knepley     /* For each fine grid cell */
14034ef9d792SMatthew G. Knepley     for (cell = cStart; cell < cEnd; ++cell) {
14044ef9d792SMatthew G. Knepley       PetscInt *findices,   *cindices;
14054ef9d792SMatthew G. Knepley       PetscInt  numFIndices, numCIndices;
14064ef9d792SMatthew G. Knepley 
14076ecaa68aSToby Isaac       ierr = DMPlexGetClosureIndices(dmf, fsection, globalFSection, cell, &numFIndices, &findices, NULL);CHKERRQ(ierr);
14084ef9d792SMatthew G. Knepley       ierr = DMPlexComputeCellGeometryFEM(dmf, cell, NULL, v0, J, invJ, &detJ);CHKERRQ(ierr);
14094ef9d792SMatthew G. Knepley       if (numFIndices != fpdim*Nc) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of fine indices %d != %d dual basis vecs", numFIndices, fpdim*Nc);
14104ef9d792SMatthew G. Knepley       for (i = 0; i < fpdim; ++i) {
14114ef9d792SMatthew G. Knepley         Vec             pointVec;
14124ef9d792SMatthew G. Knepley         PetscScalar    *pV;
14133a93e3b7SToby Isaac         PetscSF         coarseCellSF = NULL;
14143a93e3b7SToby Isaac         const PetscSFNode *coarseCells;
14154ef9d792SMatthew G. Knepley         PetscInt        numCoarseCells, q, r, c;
14164ef9d792SMatthew G. Knepley 
14174ef9d792SMatthew G. Knepley         /* Get points from the dual basis functional quadrature */
14184ef9d792SMatthew G. Knepley         ierr = PetscDualSpaceGetFunctional(Q, i, &f);CHKERRQ(ierr);
14194ef9d792SMatthew G. Knepley         ierr = PetscQuadratureGetData(f, NULL, &Np, &qpoints, NULL);CHKERRQ(ierr);
14204ef9d792SMatthew G. Knepley         ierr = VecCreateSeq(PETSC_COMM_SELF, Np*dim, &pointVec);CHKERRQ(ierr);
14214ef9d792SMatthew G. Knepley         ierr = VecSetBlockSize(pointVec, dim);CHKERRQ(ierr);
14224ef9d792SMatthew G. Knepley         ierr = VecGetArray(pointVec, &pV);CHKERRQ(ierr);
14234ef9d792SMatthew G. Knepley         for (q = 0; q < Np; ++q) {
14244ef9d792SMatthew G. Knepley           /* Transform point to real space */
14254ef9d792SMatthew G. Knepley           CoordinatesRefToReal(dim, dim, v0, J, &qpoints[q*dim], x);
14264ef9d792SMatthew G. Knepley           for (d = 0; d < dim; ++d) pV[q*dim+d] = x[d];
14274ef9d792SMatthew G. Knepley         }
14284ef9d792SMatthew G. Knepley         ierr = VecRestoreArray(pointVec, &pV);CHKERRQ(ierr);
14294ef9d792SMatthew G. Knepley         /* Get set of coarse cells that overlap points (would like to group points by coarse cell) */
143062a38674SMatthew G. Knepley         ierr = DMLocatePoints(dmc, pointVec, DM_POINTLOCATION_NEAREST, &coarseCellSF);CHKERRQ(ierr);
14313a93e3b7SToby Isaac         ierr = PetscSFViewFromOptions(coarseCellSF, NULL, "-interp_sf_view");CHKERRQ(ierr);
14324ef9d792SMatthew G. Knepley         /* Update preallocation info */
14333a93e3b7SToby Isaac         ierr = PetscSFGetGraph(coarseCellSF, NULL, &numCoarseCells, NULL, &coarseCells);CHKERRQ(ierr);
14343a93e3b7SToby Isaac         if (numCoarseCells != Np) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Not all closure points located");
14354ef9d792SMatthew G. Knepley         for (r = 0; r < Nc; ++r) {
14364ef9d792SMatthew G. Knepley           PetscHashJKKey  key;
14374ef9d792SMatthew G. Knepley           PetscHashJKIter missing, iter;
14384ef9d792SMatthew G. Knepley 
14394ef9d792SMatthew G. Knepley           key.j = findices[i*Nc+r];
14404ef9d792SMatthew G. Knepley           if (key.j < 0) continue;
14414ef9d792SMatthew G. Knepley           /* Get indices for coarse elements */
14424ef9d792SMatthew G. Knepley           for (ccell = 0; ccell < numCoarseCells; ++ccell) {
14433a93e3b7SToby Isaac             ierr = DMPlexGetClosureIndices(dmc, csection, globalCSection, coarseCells[ccell].index, &numCIndices, &cindices, NULL);CHKERRQ(ierr);
14444ef9d792SMatthew G. Knepley             for (c = 0; c < numCIndices; ++c) {
14454ef9d792SMatthew G. Knepley               key.k = cindices[c];
14464ef9d792SMatthew G. Knepley               if (key.k < 0) continue;
14474ef9d792SMatthew G. Knepley               ierr = PetscHashJKPut(ht, key, &missing, &iter);CHKERRQ(ierr);
14484ef9d792SMatthew G. Knepley               if (missing) {
14494ef9d792SMatthew G. Knepley                 ierr = PetscHashJKSet(ht, iter, 1);CHKERRQ(ierr);
14504ef9d792SMatthew G. Knepley                 if ((key.k >= rStart) && (key.k < rEnd)) ++dnz[key.j-rStart];
14514ef9d792SMatthew G. Knepley                 else                                     ++onz[key.j-rStart];
14524ef9d792SMatthew G. Knepley               }
14534ef9d792SMatthew G. Knepley             }
14543a93e3b7SToby Isaac             ierr = DMPlexRestoreClosureIndices(dmc, csection, globalCSection, coarseCells[ccell].index, &numCIndices, &cindices, NULL);CHKERRQ(ierr);
14554ef9d792SMatthew G. Knepley           }
14564ef9d792SMatthew G. Knepley         }
14573a93e3b7SToby Isaac         ierr = PetscSFDestroy(&coarseCellSF);CHKERRQ(ierr);
14584ef9d792SMatthew G. Knepley         ierr = VecDestroy(&pointVec);CHKERRQ(ierr);
14594ef9d792SMatthew G. Knepley       }
146046bdb399SToby Isaac       ierr = DMPlexRestoreClosureIndices(dmf, fsection, globalFSection, cell, &numFIndices, &findices, NULL);CHKERRQ(ierr);
14614ef9d792SMatthew G. Knepley     }
14624ef9d792SMatthew G. Knepley   }
14634ef9d792SMatthew G. Knepley   ierr = PetscHashJKDestroy(&ht);CHKERRQ(ierr);
14644ef9d792SMatthew G. Knepley   ierr = MatXAIJSetPreallocation(In, 1, dnz, onz, NULL, NULL);CHKERRQ(ierr);
14654ef9d792SMatthew G. Knepley   ierr = MatSetOption(In, MAT_NEW_NONZERO_ALLOCATION_ERR,PETSC_TRUE);CHKERRQ(ierr);
14664ef9d792SMatthew G. Knepley   ierr = PetscFree2(dnz,onz);CHKERRQ(ierr);
14674ef9d792SMatthew G. Knepley   for (field = 0; field < Nf; ++field) {
14684ef9d792SMatthew G. Knepley     PetscObject      obj;
14694ef9d792SMatthew G. Knepley     PetscClassId     id;
1470c0d7054bSMatthew G. Knepley     PetscDualSpace   Q = NULL;
14714ef9d792SMatthew G. Knepley     PetscQuadrature  f;
14724ef9d792SMatthew G. Knepley     const PetscReal *qpoints, *qweights;
147317f047d8SMatthew G. Knepley     PetscInt         Nc, Np, fpdim, i, d;
14744ef9d792SMatthew G. Knepley 
14754ef9d792SMatthew G. Knepley     ierr = PetscDSGetDiscretization(prob, field, &obj);CHKERRQ(ierr);
14764ef9d792SMatthew G. Knepley     ierr = PetscObjectGetClassId(obj, &id);CHKERRQ(ierr);
14774ef9d792SMatthew G. Knepley     if (id == PETSCFE_CLASSID) {
14784ef9d792SMatthew G. Knepley       PetscFE fe = (PetscFE) obj;
14794ef9d792SMatthew G. Knepley 
14804ef9d792SMatthew G. Knepley       ierr = PetscFEGetDualSpace(fe, &Q);CHKERRQ(ierr);
14814ef9d792SMatthew G. Knepley       ierr = PetscFEGetNumComponents(fe, &Nc);CHKERRQ(ierr);
14824ef9d792SMatthew G. Knepley     } else if (id == PETSCFV_CLASSID) {
14834ef9d792SMatthew G. Knepley       PetscFV fv = (PetscFV) obj;
14844ef9d792SMatthew G. Knepley 
14854ef9d792SMatthew G. Knepley       ierr = PetscFVGetDualSpace(fv, &Q);CHKERRQ(ierr);
14864ef9d792SMatthew G. Knepley       Nc   = 1;
14874ef9d792SMatthew G. Knepley     }
14884ef9d792SMatthew G. Knepley     ierr = PetscDualSpaceGetDimension(Q, &fpdim);CHKERRQ(ierr);
14894ef9d792SMatthew G. Knepley     /* For each fine grid cell */
14904ef9d792SMatthew G. Knepley     for (cell = cStart; cell < cEnd; ++cell) {
14914ef9d792SMatthew G. Knepley       PetscInt *findices,   *cindices;
14924ef9d792SMatthew G. Knepley       PetscInt  numFIndices, numCIndices;
14934ef9d792SMatthew G. Knepley 
14946ecaa68aSToby Isaac       ierr = DMPlexGetClosureIndices(dmf, fsection, globalFSection, cell, &numFIndices, &findices, NULL);CHKERRQ(ierr);
14954ef9d792SMatthew G. Knepley       ierr = DMPlexComputeCellGeometryFEM(dmf, cell, NULL, v0, J, invJ, &detJ);CHKERRQ(ierr);
14964ef9d792SMatthew G. Knepley       if (numFIndices != fpdim*Nc) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of fine indices %d != %d dual basis vecs", numFIndices, fpdim*Nc);
14974ef9d792SMatthew G. Knepley       for (i = 0; i < fpdim; ++i) {
14984ef9d792SMatthew G. Knepley         Vec             pointVec;
14994ef9d792SMatthew G. Knepley         PetscScalar    *pV;
150012111d7cSToby Isaac         PetscSF         coarseCellSF = NULL;
15013a93e3b7SToby Isaac         const PetscSFNode *coarseCells;
150217f047d8SMatthew G. Knepley         PetscInt        numCoarseCells, cpdim, q, c, j;
15034ef9d792SMatthew G. Knepley 
15044ef9d792SMatthew G. Knepley         /* Get points from the dual basis functional quadrature */
15054ef9d792SMatthew G. Knepley         ierr = PetscDualSpaceGetFunctional(Q, i, &f);CHKERRQ(ierr);
15064ef9d792SMatthew G. Knepley         ierr = PetscQuadratureGetData(f, NULL, &Np, &qpoints, &qweights);CHKERRQ(ierr);
15074ef9d792SMatthew G. Knepley         ierr = VecCreateSeq(PETSC_COMM_SELF, Np*dim, &pointVec);CHKERRQ(ierr);
15084ef9d792SMatthew G. Knepley         ierr = VecSetBlockSize(pointVec, dim);CHKERRQ(ierr);
15094ef9d792SMatthew G. Knepley         ierr = VecGetArray(pointVec, &pV);CHKERRQ(ierr);
15104ef9d792SMatthew G. Knepley         for (q = 0; q < Np; ++q) {
15114ef9d792SMatthew G. Knepley           /* Transform point to real space */
15124ef9d792SMatthew G. Knepley           CoordinatesRefToReal(dim, dim, v0, J, &qpoints[q*dim], x);
15134ef9d792SMatthew G. Knepley           for (d = 0; d < dim; ++d) pV[q*dim+d] = x[d];
15144ef9d792SMatthew G. Knepley         }
15154ef9d792SMatthew G. Knepley         ierr = VecRestoreArray(pointVec, &pV);CHKERRQ(ierr);
15164ef9d792SMatthew G. Knepley         /* Get set of coarse cells that overlap points (would like to group points by coarse cell) */
151762a38674SMatthew G. Knepley         ierr = DMLocatePoints(dmc, pointVec, DM_POINTLOCATION_NEAREST, &coarseCellSF);CHKERRQ(ierr);
15184ef9d792SMatthew G. Knepley         /* Update preallocation info */
15193a93e3b7SToby Isaac         ierr = PetscSFGetGraph(coarseCellSF, NULL, &numCoarseCells, NULL, &coarseCells);CHKERRQ(ierr);
15203a93e3b7SToby Isaac         if (numCoarseCells != Np) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Not all closure points located");
15214ef9d792SMatthew G. Knepley         ierr = VecGetArray(pointVec, &pV);CHKERRQ(ierr);
15224ef9d792SMatthew G. Knepley         for (ccell = 0; ccell < numCoarseCells; ++ccell) {
1523826eb36dSMatthew G. Knepley           PetscReal pVReal[3];
1524826eb36dSMatthew G. Knepley 
15253a93e3b7SToby Isaac           ierr = DMPlexGetClosureIndices(dmc, csection, globalCSection, coarseCells[ccell].index, &numCIndices, &cindices, NULL);CHKERRQ(ierr);
15264ef9d792SMatthew G. Knepley           /* Transform points from real space to coarse reference space */
15273a93e3b7SToby Isaac           ierr = DMPlexComputeCellGeometryFEM(dmc, coarseCells[ccell].index, NULL, v0c, Jc, invJc, &detJc);CHKERRQ(ierr);
1528e2d86523SMatthew G. Knepley           for (d = 0; d < dim; ++d) pVReal[d] = PetscRealPart(pV[ccell*dim+d]);
1529826eb36dSMatthew G. Knepley           CoordinatesRealToRef(dim, dim, v0c, invJc, pVReal, x);
15304ef9d792SMatthew G. Knepley 
15314ef9d792SMatthew G. Knepley           if (id == PETSCFE_CLASSID) {
15324ef9d792SMatthew G. Knepley             PetscFE    fe = (PetscFE) obj;
15334ef9d792SMatthew G. Knepley             PetscReal *B;
15344ef9d792SMatthew G. Knepley 
15354ef9d792SMatthew G. Knepley             /* Evaluate coarse basis on contained point */
15364ef9d792SMatthew G. Knepley             ierr = PetscFEGetDimension(fe, &cpdim);CHKERRQ(ierr);
15374ef9d792SMatthew G. Knepley             ierr = PetscFEGetTabulation(fe, 1, x, &B, NULL, NULL);CHKERRQ(ierr);
1538bdeb5f8fSMatthew G. Knepley             ierr = PetscMemzero(elemMat, cpdim*Nc*Nc * sizeof(PetscScalar));CHKERRQ(ierr);
15394ef9d792SMatthew G. Knepley             /* Get elemMat entries by multiplying by weight */
15404ef9d792SMatthew G. Knepley             for (j = 0; j < cpdim; ++j) {
15414ef9d792SMatthew G. Knepley               for (c = 0; c < Nc; ++c) elemMat[(c*cpdim + j)*Nc + c] = B[j*Nc + c]*qweights[ccell];
15424ef9d792SMatthew G. Knepley             }
15434ef9d792SMatthew G. Knepley             ierr = PetscFERestoreTabulation(fe, 1, x, &B, NULL, NULL);CHKERRQ(ierr);CHKERRQ(ierr);
15444ef9d792SMatthew G. Knepley           } else {
15454ef9d792SMatthew G. Knepley             cpdim = 1;
15464ef9d792SMatthew G. Knepley             for (j = 0; j < cpdim; ++j) {
15474ef9d792SMatthew G. Knepley               for (c = 0; c < Nc; ++c) elemMat[(c*cpdim + j)*Nc + c] = 1.0*qweights[ccell];
15484ef9d792SMatthew G. Knepley             }
15494ef9d792SMatthew G. Knepley           }
15504ef9d792SMatthew G. Knepley           /* Update interpolator */
155164e98e1dSMatthew G. Knepley           if (mesh->printFEM > 1) {ierr = DMPrintCellMatrix(cell, name, Nc, numCIndices, elemMat);CHKERRQ(ierr);}
1552bdeb5f8fSMatthew G. Knepley           if (numCIndices != cpdim*Nc) SETERRQ3(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Number of element matrix columns %D != %D*%D", numCIndices, cpdim, Nc);
15534ef9d792SMatthew G. Knepley           ierr = MatSetValues(In, Nc, &findices[i*Nc], numCIndices, cindices, elemMat, INSERT_VALUES);CHKERRQ(ierr);
15543a93e3b7SToby Isaac           ierr = DMPlexRestoreClosureIndices(dmc, csection, globalCSection, coarseCells[ccell].index, &numCIndices, &cindices, NULL);CHKERRQ(ierr);
15554ef9d792SMatthew G. Knepley         }
15564ef9d792SMatthew G. Knepley         ierr = VecRestoreArray(pointVec, &pV);CHKERRQ(ierr);
15573a93e3b7SToby Isaac         ierr = PetscSFDestroy(&coarseCellSF);CHKERRQ(ierr);
15584ef9d792SMatthew G. Knepley         ierr = VecDestroy(&pointVec);CHKERRQ(ierr);
15594ef9d792SMatthew G. Knepley       }
156046bdb399SToby Isaac       ierr = DMPlexRestoreClosureIndices(dmf, fsection, globalFSection, cell, &numFIndices, &findices, NULL);CHKERRQ(ierr);
15614ef9d792SMatthew G. Knepley     }
15624ef9d792SMatthew G. Knepley   }
15634ef9d792SMatthew G. Knepley   ierr = PetscFree3(v0,J,invJ);CHKERRQ(ierr);
15644ef9d792SMatthew G. Knepley   ierr = PetscFree3(v0c,Jc,invJc);CHKERRQ(ierr);
15654ef9d792SMatthew G. Knepley   ierr = PetscFree(elemMat);CHKERRQ(ierr);
15664ef9d792SMatthew G. Knepley   ierr = MatAssemblyBegin(In, MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
15674ef9d792SMatthew G. Knepley   ierr = MatAssemblyEnd(In, MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
156877711781SMatthew G. Knepley   ierr = PetscLogEventEnd(DMPLEX_InterpolatorFEM,dmc,dmf,0,0);CHKERRQ(ierr);
15694ef9d792SMatthew G. Knepley   PetscFunctionReturn(0);
15704ef9d792SMatthew G. Knepley }
15714ef9d792SMatthew G. Knepley 
157246fa42a0SMatthew G. Knepley /*@
157346fa42a0SMatthew G. Knepley   DMPlexComputeInjectorFEM - Compute a mapping from coarse unknowns to fine unknowns
157446fa42a0SMatthew G. Knepley 
157546fa42a0SMatthew G. Knepley   Input Parameters:
157646fa42a0SMatthew G. Knepley + dmc  - The coarse mesh
157746fa42a0SMatthew G. Knepley - dmf  - The fine mesh
157846fa42a0SMatthew G. Knepley - user - The user context
157946fa42a0SMatthew G. Knepley 
158046fa42a0SMatthew G. Knepley   Output Parameter:
158146fa42a0SMatthew G. Knepley . sc   - The mapping
158246fa42a0SMatthew G. Knepley 
158346fa42a0SMatthew G. Knepley   Level: developer
158446fa42a0SMatthew G. Knepley 
158546fa42a0SMatthew G. Knepley .seealso: DMPlexComputeInterpolatorNested(), DMPlexComputeJacobianFEM()
158646fa42a0SMatthew G. Knepley @*/
15877c927364SMatthew G. Knepley PetscErrorCode DMPlexComputeInjectorFEM(DM dmc, DM dmf, VecScatter *sc, void *user)
15887c927364SMatthew G. Knepley {
1589e9d4ef1bSMatthew G. Knepley   PetscDS        prob;
15907c927364SMatthew G. Knepley   PetscFE       *feRef;
159197c42addSMatthew G. Knepley   PetscFV       *fvRef;
15927c927364SMatthew G. Knepley   Vec            fv, cv;
15937c927364SMatthew G. Knepley   IS             fis, cis;
15947c927364SMatthew G. Knepley   PetscSection   fsection, fglobalSection, csection, cglobalSection;
15957c927364SMatthew G. Knepley   PetscInt      *cmap, *cellCIndices, *cellFIndices, *cindices, *findices;
15960bd915a7SMatthew G. Knepley   PetscInt       cTotDim, fTotDim = 0, Nf, f, field, cStart, cEnd, cEndInterior, c, dim, d, startC, endC, offsetC, offsetF, m;
15977c927364SMatthew G. Knepley   PetscErrorCode ierr;
15987c927364SMatthew G. Knepley 
15997c927364SMatthew G. Knepley   PetscFunctionBegin;
160075a69067SMatthew G. Knepley   ierr = PetscLogEventBegin(DMPLEX_InjectorFEM,dmc,dmf,0,0);CHKERRQ(ierr);
1601c73cfb54SMatthew G. Knepley   ierr = DMGetDimension(dmf, &dim);CHKERRQ(ierr);
16027c927364SMatthew G. Knepley   ierr = DMGetDefaultSection(dmf, &fsection);CHKERRQ(ierr);
16037c927364SMatthew G. Knepley   ierr = DMGetDefaultGlobalSection(dmf, &fglobalSection);CHKERRQ(ierr);
16047c927364SMatthew G. Knepley   ierr = DMGetDefaultSection(dmc, &csection);CHKERRQ(ierr);
16057c927364SMatthew G. Knepley   ierr = DMGetDefaultGlobalSection(dmc, &cglobalSection);CHKERRQ(ierr);
16067c927364SMatthew G. Knepley   ierr = PetscSectionGetNumFields(fsection, &Nf);CHKERRQ(ierr);
16077c927364SMatthew G. Knepley   ierr = DMPlexGetHeightStratum(dmc, 0, &cStart, &cEnd);CHKERRQ(ierr);
16089ac3fadcSMatthew G. Knepley   ierr = DMPlexGetHybridBounds(dmc, &cEndInterior, NULL, NULL, NULL);CHKERRQ(ierr);
16099ac3fadcSMatthew G. Knepley   cEnd = cEndInterior < 0 ? cEnd : cEndInterior;
1610e9d4ef1bSMatthew G. Knepley   ierr = DMGetDS(dmc, &prob);CHKERRQ(ierr);
161197c42addSMatthew G. Knepley   ierr = PetscCalloc2(Nf,&feRef,Nf,&fvRef);CHKERRQ(ierr);
16127c927364SMatthew G. Knepley   for (f = 0; f < Nf; ++f) {
161397c42addSMatthew G. Knepley     PetscObject  obj;
161497c42addSMatthew G. Knepley     PetscClassId id;
1615aa7890ccSMatthew G. Knepley     PetscInt     fNb = 0, Nc = 0;
16167c927364SMatthew G. Knepley 
161797c42addSMatthew G. Knepley     ierr = PetscDSGetDiscretization(prob, f, &obj);CHKERRQ(ierr);
161897c42addSMatthew G. Knepley     ierr = PetscObjectGetClassId(obj, &id);CHKERRQ(ierr);
161997c42addSMatthew G. Knepley     if (id == PETSCFE_CLASSID) {
162097c42addSMatthew G. Knepley       PetscFE fe = (PetscFE) obj;
162197c42addSMatthew G. Knepley 
16227c927364SMatthew G. Knepley       ierr = PetscFERefine(fe, &feRef[f]);CHKERRQ(ierr);
16237c927364SMatthew G. Knepley       ierr = PetscFEGetDimension(feRef[f], &fNb);CHKERRQ(ierr);
16247c927364SMatthew G. Knepley       ierr = PetscFEGetNumComponents(fe, &Nc);CHKERRQ(ierr);
162597c42addSMatthew G. Knepley     } else if (id == PETSCFV_CLASSID) {
162697c42addSMatthew G. Knepley       PetscFV        fv = (PetscFV) obj;
162797c42addSMatthew G. Knepley       PetscDualSpace Q;
162897c42addSMatthew G. Knepley 
162997c42addSMatthew G. Knepley       ierr = PetscFVRefine(fv, &fvRef[f]);CHKERRQ(ierr);
163097c42addSMatthew G. Knepley       ierr = PetscFVGetDualSpace(fvRef[f], &Q);CHKERRQ(ierr);
163197c42addSMatthew G. Knepley       ierr = PetscDualSpaceGetDimension(Q, &fNb);CHKERRQ(ierr);
163297c42addSMatthew G. Knepley       ierr = PetscFVGetNumComponents(fv, &Nc);CHKERRQ(ierr);
163397c42addSMatthew G. Knepley     }
16347c927364SMatthew G. Knepley     fTotDim += fNb*Nc;
16357c927364SMatthew G. Knepley   }
1636e9d4ef1bSMatthew G. Knepley   ierr = PetscDSGetTotalDimension(prob, &cTotDim);CHKERRQ(ierr);
16377c927364SMatthew G. Knepley   ierr = PetscMalloc1(cTotDim,&cmap);CHKERRQ(ierr);
16387c927364SMatthew G. Knepley   for (field = 0, offsetC = 0, offsetF = 0; field < Nf; ++field) {
16397c927364SMatthew G. Knepley     PetscFE        feC;
164097c42addSMatthew G. Knepley     PetscFV        fvC;
16417c927364SMatthew G. Knepley     PetscDualSpace QF, QC;
16427c927364SMatthew G. Knepley     PetscInt       NcF, NcC, fpdim, cpdim;
16437c927364SMatthew G. Knepley 
164497c42addSMatthew G. Knepley     if (feRef[field]) {
1645e9d4ef1bSMatthew G. Knepley       ierr = PetscDSGetDiscretization(prob, field, (PetscObject *) &feC);CHKERRQ(ierr);
16467c927364SMatthew G. Knepley       ierr = PetscFEGetNumComponents(feC, &NcC);CHKERRQ(ierr);
16477c927364SMatthew G. Knepley       ierr = PetscFEGetNumComponents(feRef[field], &NcF);CHKERRQ(ierr);
16487c927364SMatthew G. Knepley       ierr = PetscFEGetDualSpace(feRef[field], &QF);CHKERRQ(ierr);
16497c927364SMatthew G. Knepley       ierr = PetscDualSpaceGetDimension(QF, &fpdim);CHKERRQ(ierr);
16507c927364SMatthew G. Knepley       ierr = PetscFEGetDualSpace(feC, &QC);CHKERRQ(ierr);
16517c927364SMatthew G. Knepley       ierr = PetscDualSpaceGetDimension(QC, &cpdim);CHKERRQ(ierr);
165297c42addSMatthew G. Knepley     } else {
165397c42addSMatthew G. Knepley       ierr = PetscDSGetDiscretization(prob, field, (PetscObject *) &fvC);CHKERRQ(ierr);
165497c42addSMatthew G. Knepley       ierr = PetscFVGetNumComponents(fvC, &NcC);CHKERRQ(ierr);
165597c42addSMatthew G. Knepley       ierr = PetscFVGetNumComponents(fvRef[field], &NcF);CHKERRQ(ierr);
165697c42addSMatthew G. Knepley       ierr = PetscFVGetDualSpace(fvRef[field], &QF);CHKERRQ(ierr);
165797c42addSMatthew G. Knepley       ierr = PetscDualSpaceGetDimension(QF, &fpdim);CHKERRQ(ierr);
165897c42addSMatthew G. Knepley       ierr = PetscFVGetDualSpace(fvC, &QC);CHKERRQ(ierr);
165997c42addSMatthew G. Knepley       ierr = PetscDualSpaceGetDimension(QC, &cpdim);CHKERRQ(ierr);
166097c42addSMatthew G. Knepley     }
166197c42addSMatthew G. Knepley     if (NcF != NcC) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of components in fine space field %d does not match coarse field %d", NcF, NcC);
16627c927364SMatthew G. Knepley     for (c = 0; c < cpdim; ++c) {
16637c927364SMatthew G. Knepley       PetscQuadrature  cfunc;
16647c927364SMatthew G. Knepley       const PetscReal *cqpoints;
16657c927364SMatthew G. Knepley       PetscInt         NpC;
166697c42addSMatthew G. Knepley       PetscBool        found = PETSC_FALSE;
16677c927364SMatthew G. Knepley 
16687c927364SMatthew G. Knepley       ierr = PetscDualSpaceGetFunctional(QC, c, &cfunc);CHKERRQ(ierr);
16697c927364SMatthew G. Knepley       ierr = PetscQuadratureGetData(cfunc, NULL, &NpC, &cqpoints, NULL);CHKERRQ(ierr);
167097c42addSMatthew G. Knepley       if (NpC != 1 && feRef[field]) SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Do not know how to do injection for moments");
16717c927364SMatthew G. Knepley       for (f = 0; f < fpdim; ++f) {
16727c927364SMatthew G. Knepley         PetscQuadrature  ffunc;
16737c927364SMatthew G. Knepley         const PetscReal *fqpoints;
16747c927364SMatthew G. Knepley         PetscReal        sum = 0.0;
16757c927364SMatthew G. Knepley         PetscInt         NpF, comp;
16767c927364SMatthew G. Knepley 
16777c927364SMatthew G. Knepley         ierr = PetscDualSpaceGetFunctional(QF, f, &ffunc);CHKERRQ(ierr);
16787c927364SMatthew G. Knepley         ierr = PetscQuadratureGetData(ffunc, NULL, &NpF, &fqpoints, NULL);CHKERRQ(ierr);
16797c927364SMatthew G. Knepley         if (NpC != NpF) continue;
16807c927364SMatthew G. Knepley         for (d = 0; d < dim; ++d) sum += PetscAbsReal(cqpoints[d] - fqpoints[d]);
16817c927364SMatthew G. Knepley         if (sum > 1.0e-9) continue;
16827c927364SMatthew G. Knepley         for (comp = 0; comp < NcC; ++comp) {
16837c927364SMatthew G. Knepley           cmap[(offsetC+c)*NcC+comp] = (offsetF+f)*NcF+comp;
16847c927364SMatthew G. Knepley         }
168597c42addSMatthew G. Knepley         found = PETSC_TRUE;
16867c927364SMatthew G. Knepley         break;
16877c927364SMatthew G. Knepley       }
168897c42addSMatthew G. Knepley       if (!found) {
168997c42addSMatthew G. Knepley         /* TODO We really want the average here, but some asshole put VecScatter in the interface */
169097c42addSMatthew G. Knepley         if (fvRef[field]) {
169197c42addSMatthew G. Knepley           PetscInt comp;
169297c42addSMatthew G. Knepley           for (comp = 0; comp < NcC; ++comp) {
169397c42addSMatthew G. Knepley             cmap[(offsetC+c)*NcC+comp] = (offsetF+0)*NcF+comp;
169497c42addSMatthew G. Knepley           }
169597c42addSMatthew G. Knepley         } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Could not locate matching functional for injection");
169697c42addSMatthew G. Knepley       }
16977c927364SMatthew G. Knepley     }
16987c927364SMatthew G. Knepley     offsetC += cpdim*NcC;
16997c927364SMatthew G. Knepley     offsetF += fpdim*NcF;
17007c927364SMatthew G. Knepley   }
170197c42addSMatthew G. Knepley   for (f = 0; f < Nf; ++f) {ierr = PetscFEDestroy(&feRef[f]);CHKERRQ(ierr);ierr = PetscFVDestroy(&fvRef[f]);CHKERRQ(ierr);}
170297c42addSMatthew G. Knepley   ierr = PetscFree2(feRef,fvRef);CHKERRQ(ierr);
17037c927364SMatthew G. Knepley 
17047c927364SMatthew G. Knepley   ierr = DMGetGlobalVector(dmf, &fv);CHKERRQ(ierr);
17057c927364SMatthew G. Knepley   ierr = DMGetGlobalVector(dmc, &cv);CHKERRQ(ierr);
17060bd915a7SMatthew G. Knepley   ierr = VecGetOwnershipRange(cv, &startC, &endC);CHKERRQ(ierr);
17077c927364SMatthew G. Knepley   ierr = PetscSectionGetConstrainedStorageSize(cglobalSection, &m);CHKERRQ(ierr);
17087c927364SMatthew G. Knepley   ierr = PetscMalloc2(cTotDim,&cellCIndices,fTotDim,&cellFIndices);CHKERRQ(ierr);
1709aa7da3c4SMatthew G. Knepley   ierr = PetscMalloc1(m,&cindices);CHKERRQ(ierr);
1710aa7da3c4SMatthew G. Knepley   ierr = PetscMalloc1(m,&findices);CHKERRQ(ierr);
17117c927364SMatthew G. Knepley   for (d = 0; d < m; ++d) cindices[d] = findices[d] = -1;
17127c927364SMatthew G. Knepley   for (c = cStart; c < cEnd; ++c) {
17137c927364SMatthew G. Knepley     ierr = DMPlexMatGetClosureIndicesRefined(dmf, fsection, fglobalSection, dmc, csection, cglobalSection, c, cellCIndices, cellFIndices);CHKERRQ(ierr);
17147c927364SMatthew G. Knepley     for (d = 0; d < cTotDim; ++d) {
17150bd915a7SMatthew G. Knepley       if ((cellCIndices[d] < startC) || (cellCIndices[d] >= endC)) continue;
17167c927364SMatthew G. Knepley       if ((findices[cellCIndices[d]-startC] >= 0) && (findices[cellCIndices[d]-startC] != cellFIndices[cmap[d]])) SETERRQ3(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Coarse dof %d maps to both %d and %d", cindices[cellCIndices[d]-startC], findices[cellCIndices[d]-startC], cellFIndices[cmap[d]]);
17177c927364SMatthew G. Knepley       cindices[cellCIndices[d]-startC] = cellCIndices[d];
17187c927364SMatthew G. Knepley       findices[cellCIndices[d]-startC] = cellFIndices[cmap[d]];
17197c927364SMatthew G. Knepley     }
17207c927364SMatthew G. Knepley   }
17217c927364SMatthew G. Knepley   ierr = PetscFree(cmap);CHKERRQ(ierr);
17227c927364SMatthew G. Knepley   ierr = PetscFree2(cellCIndices,cellFIndices);CHKERRQ(ierr);
17237c927364SMatthew G. Knepley 
17247c927364SMatthew G. Knepley   ierr = ISCreateGeneral(PETSC_COMM_SELF, m, cindices, PETSC_OWN_POINTER, &cis);CHKERRQ(ierr);
17257c927364SMatthew G. Knepley   ierr = ISCreateGeneral(PETSC_COMM_SELF, m, findices, PETSC_OWN_POINTER, &fis);CHKERRQ(ierr);
17267c927364SMatthew G. Knepley   ierr = VecScatterCreate(cv, cis, fv, fis, sc);CHKERRQ(ierr);
17277c927364SMatthew G. Knepley   ierr = ISDestroy(&cis);CHKERRQ(ierr);
17287c927364SMatthew G. Knepley   ierr = ISDestroy(&fis);CHKERRQ(ierr);
17297c927364SMatthew G. Knepley   ierr = DMRestoreGlobalVector(dmf, &fv);CHKERRQ(ierr);
17307c927364SMatthew G. Knepley   ierr = DMRestoreGlobalVector(dmc, &cv);CHKERRQ(ierr);
173175a69067SMatthew G. Knepley   ierr = PetscLogEventEnd(DMPLEX_InjectorFEM,dmc,dmf,0,0);CHKERRQ(ierr);
1732cb1e1211SMatthew G Knepley   PetscFunctionReturn(0);
1733cb1e1211SMatthew G Knepley }
1734