1af0996ceSBarry Smith #include <petsc/private/dmpleximpl.h> /*I "petscdmplex.h" I*/ 2da97024aSMatthew G. Knepley #include <petscsf.h> 3cb1e1211SMatthew G Knepley 4af0996ceSBarry Smith #include <petsc/private/petscfeimpl.h> 5af0996ceSBarry Smith #include <petsc/private/petscfvimpl.h> 6a0845e3aSMatthew G. Knepley 746fa42a0SMatthew G. Knepley /*@ 846fa42a0SMatthew G. Knepley DMPlexGetScale - Get the scale for the specified fundamental unit 946fa42a0SMatthew G. Knepley 1046fa42a0SMatthew G. Knepley Not collective 1146fa42a0SMatthew G. Knepley 1246fa42a0SMatthew G. Knepley Input Arguments: 1346fa42a0SMatthew G. Knepley + dm - the DM 1446fa42a0SMatthew G. Knepley - unit - The SI unit 1546fa42a0SMatthew G. Knepley 1646fa42a0SMatthew G. Knepley Output Argument: 1746fa42a0SMatthew G. Knepley . scale - The value used to scale all quantities with this unit 1846fa42a0SMatthew G. Knepley 1946fa42a0SMatthew G. Knepley Level: advanced 2046fa42a0SMatthew G. Knepley 2146fa42a0SMatthew G. Knepley .seealso: DMPlexSetScale(), PetscUnit 2246fa42a0SMatthew G. Knepley @*/ 23cb1e1211SMatthew G Knepley PetscErrorCode DMPlexGetScale(DM dm, PetscUnit unit, PetscReal *scale) 24cb1e1211SMatthew G Knepley { 25cb1e1211SMatthew G Knepley DM_Plex *mesh = (DM_Plex*) dm->data; 26cb1e1211SMatthew G Knepley 27cb1e1211SMatthew G Knepley PetscFunctionBegin; 28cb1e1211SMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 29cb1e1211SMatthew G Knepley PetscValidPointer(scale, 3); 30cb1e1211SMatthew G Knepley *scale = mesh->scale[unit]; 31cb1e1211SMatthew G Knepley PetscFunctionReturn(0); 32cb1e1211SMatthew G Knepley } 33cb1e1211SMatthew G Knepley 3446fa42a0SMatthew G. Knepley /*@ 3546fa42a0SMatthew G. Knepley DMPlexSetScale - Set the scale for the specified fundamental unit 3646fa42a0SMatthew G. Knepley 3746fa42a0SMatthew G. Knepley Not collective 3846fa42a0SMatthew G. Knepley 3946fa42a0SMatthew G. Knepley Input Arguments: 4046fa42a0SMatthew G. Knepley + dm - the DM 4146fa42a0SMatthew G. Knepley . unit - The SI unit 4246fa42a0SMatthew G. Knepley - scale - The value used to scale all quantities with this unit 4346fa42a0SMatthew G. Knepley 4446fa42a0SMatthew G. Knepley Level: advanced 4546fa42a0SMatthew G. Knepley 4646fa42a0SMatthew G. Knepley .seealso: DMPlexGetScale(), PetscUnit 4746fa42a0SMatthew G. Knepley @*/ 48cb1e1211SMatthew G Knepley PetscErrorCode DMPlexSetScale(DM dm, PetscUnit unit, PetscReal scale) 49cb1e1211SMatthew G Knepley { 50cb1e1211SMatthew G Knepley DM_Plex *mesh = (DM_Plex*) dm->data; 51cb1e1211SMatthew G Knepley 52cb1e1211SMatthew G Knepley PetscFunctionBegin; 53cb1e1211SMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 54cb1e1211SMatthew G Knepley mesh->scale[unit] = scale; 55cb1e1211SMatthew G Knepley PetscFunctionReturn(0); 56cb1e1211SMatthew G Knepley } 57cb1e1211SMatthew G Knepley 58cb1e1211SMatthew G Knepley PETSC_STATIC_INLINE PetscInt epsilon(PetscInt i, PetscInt j, PetscInt k) 59cb1e1211SMatthew G Knepley { 60cb1e1211SMatthew G Knepley switch (i) { 61cb1e1211SMatthew G Knepley case 0: 62cb1e1211SMatthew G Knepley switch (j) { 63cb1e1211SMatthew G Knepley case 0: return 0; 64cb1e1211SMatthew G Knepley case 1: 65cb1e1211SMatthew G Knepley switch (k) { 66cb1e1211SMatthew G Knepley case 0: return 0; 67cb1e1211SMatthew G Knepley case 1: return 0; 68cb1e1211SMatthew G Knepley case 2: return 1; 69cb1e1211SMatthew G Knepley } 70cb1e1211SMatthew G Knepley case 2: 71cb1e1211SMatthew G Knepley switch (k) { 72cb1e1211SMatthew G Knepley case 0: return 0; 73cb1e1211SMatthew G Knepley case 1: return -1; 74cb1e1211SMatthew G Knepley case 2: return 0; 75cb1e1211SMatthew G Knepley } 76cb1e1211SMatthew G Knepley } 77cb1e1211SMatthew G Knepley case 1: 78cb1e1211SMatthew G Knepley switch (j) { 79cb1e1211SMatthew G Knepley case 0: 80cb1e1211SMatthew G Knepley switch (k) { 81cb1e1211SMatthew G Knepley case 0: return 0; 82cb1e1211SMatthew G Knepley case 1: return 0; 83cb1e1211SMatthew G Knepley case 2: return -1; 84cb1e1211SMatthew G Knepley } 85cb1e1211SMatthew G Knepley case 1: return 0; 86cb1e1211SMatthew G Knepley case 2: 87cb1e1211SMatthew G Knepley switch (k) { 88cb1e1211SMatthew G Knepley case 0: return 1; 89cb1e1211SMatthew G Knepley case 1: return 0; 90cb1e1211SMatthew G Knepley case 2: return 0; 91cb1e1211SMatthew G Knepley } 92cb1e1211SMatthew G Knepley } 93cb1e1211SMatthew G Knepley case 2: 94cb1e1211SMatthew G Knepley switch (j) { 95cb1e1211SMatthew G Knepley case 0: 96cb1e1211SMatthew G Knepley switch (k) { 97cb1e1211SMatthew G Knepley case 0: return 0; 98cb1e1211SMatthew G Knepley case 1: return 1; 99cb1e1211SMatthew G Knepley case 2: return 0; 100cb1e1211SMatthew G Knepley } 101cb1e1211SMatthew G Knepley case 1: 102cb1e1211SMatthew G Knepley switch (k) { 103cb1e1211SMatthew G Knepley case 0: return -1; 104cb1e1211SMatthew G Knepley case 1: return 0; 105cb1e1211SMatthew G Knepley case 2: return 0; 106cb1e1211SMatthew G Knepley } 107cb1e1211SMatthew G Knepley case 2: return 0; 108cb1e1211SMatthew G Knepley } 109cb1e1211SMatthew G Knepley } 110cb1e1211SMatthew G Knepley return 0; 111cb1e1211SMatthew G Knepley } 112cb1e1211SMatthew G Knepley 113d1828a1cSMatthew G. Knepley static PetscErrorCode DMPlexProjectRigidBody_Private(PetscInt dim, PetscReal t, const PetscReal X[], PetscInt Nf, PetscScalar *mode, void *ctx) 114026175e5SToby Isaac { 115026175e5SToby Isaac PetscInt *ctxInt = (PetscInt *) ctx; 116ad917190SMatthew G. Knepley PetscInt dim2 = ctxInt[0]; 117026175e5SToby Isaac PetscInt d = ctxInt[1]; 118026175e5SToby Isaac PetscInt i, j, k = dim > 2 ? d - dim : d; 119026175e5SToby Isaac 120ad917190SMatthew G. Knepley PetscFunctionBegin; 121ad917190SMatthew G. Knepley if (dim != dim2) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Input dimension %d does not match context dimension %d", dim, dim2); 122026175e5SToby Isaac for (i = 0; i < dim; i++) mode[i] = 0.; 123026175e5SToby Isaac if (d < dim) { 124026175e5SToby Isaac mode[d] = 1.; 125ad917190SMatthew G. Knepley } else { 126026175e5SToby Isaac for (i = 0; i < dim; i++) { 127026175e5SToby Isaac for (j = 0; j < dim; j++) { 128026175e5SToby Isaac mode[j] += epsilon(i, j, k)*X[i]; 129026175e5SToby Isaac } 130026175e5SToby Isaac } 131026175e5SToby Isaac } 132ad917190SMatthew G. Knepley PetscFunctionReturn(0); 133026175e5SToby Isaac } 134026175e5SToby Isaac 135cb1e1211SMatthew G Knepley /*@C 136026175e5SToby Isaac DMPlexCreateRigidBody - for the default global section, create rigid body modes from coordinates 137cb1e1211SMatthew G Knepley 138cb1e1211SMatthew G Knepley Collective on DM 139cb1e1211SMatthew G Knepley 140cb1e1211SMatthew G Knepley Input Arguments: 141026175e5SToby Isaac . dm - the DM 142cb1e1211SMatthew G Knepley 143cb1e1211SMatthew G Knepley Output Argument: 144cb1e1211SMatthew G Knepley . sp - the null space 145cb1e1211SMatthew G Knepley 146cb1e1211SMatthew G Knepley Note: This is necessary to take account of Dirichlet conditions on the displacements 147cb1e1211SMatthew G Knepley 148cb1e1211SMatthew G Knepley Level: advanced 149cb1e1211SMatthew G Knepley 150cb1e1211SMatthew G Knepley .seealso: MatNullSpaceCreate() 151cb1e1211SMatthew G Knepley @*/ 152026175e5SToby Isaac PetscErrorCode DMPlexCreateRigidBody(DM dm, MatNullSpace *sp) 153cb1e1211SMatthew G Knepley { 154cb1e1211SMatthew G Knepley MPI_Comm comm; 155026175e5SToby Isaac Vec mode[6]; 156026175e5SToby Isaac PetscSection section, globalSection; 1579d8fbdeaSMatthew G. Knepley PetscInt dim, dimEmbed, n, m, d, i, j; 158cb1e1211SMatthew G Knepley PetscErrorCode ierr; 159cb1e1211SMatthew G Knepley 160cb1e1211SMatthew G Knepley PetscFunctionBegin; 161cb1e1211SMatthew G Knepley ierr = PetscObjectGetComm((PetscObject)dm,&comm);CHKERRQ(ierr); 162c73cfb54SMatthew G. Knepley ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr); 1639d8fbdeaSMatthew G. Knepley ierr = DMGetCoordinateDim(dm, &dimEmbed);CHKERRQ(ierr); 164cb1e1211SMatthew G Knepley if (dim == 1) { 165cb1e1211SMatthew G Knepley ierr = MatNullSpaceCreate(comm, PETSC_TRUE, 0, NULL, sp);CHKERRQ(ierr); 166cb1e1211SMatthew G Knepley PetscFunctionReturn(0); 167cb1e1211SMatthew G Knepley } 168026175e5SToby Isaac ierr = DMGetDefaultSection(dm, §ion);CHKERRQ(ierr); 169026175e5SToby Isaac ierr = DMGetDefaultGlobalSection(dm, &globalSection);CHKERRQ(ierr); 170cb1e1211SMatthew G Knepley ierr = PetscSectionGetConstrainedStorageSize(globalSection, &n);CHKERRQ(ierr); 171cb1e1211SMatthew G Knepley m = (dim*(dim+1))/2; 172cb1e1211SMatthew G Knepley ierr = VecCreate(comm, &mode[0]);CHKERRQ(ierr); 173cb1e1211SMatthew G Knepley ierr = VecSetSizes(mode[0], n, PETSC_DETERMINE);CHKERRQ(ierr); 174cb1e1211SMatthew G Knepley ierr = VecSetUp(mode[0]);CHKERRQ(ierr); 175cb1e1211SMatthew G Knepley for (i = 1; i < m; ++i) {ierr = VecDuplicate(mode[0], &mode[i]);CHKERRQ(ierr);} 176026175e5SToby Isaac for (d = 0; d < m; d++) { 177330485fdSToby Isaac PetscInt ctx[2]; 178d1828a1cSMatthew G. Knepley PetscErrorCode (*func)(PetscInt, PetscReal, const PetscReal *, PetscInt, PetscScalar *, void *) = DMPlexProjectRigidBody_Private; 179026175e5SToby Isaac void *voidctx = (void *) (&ctx[0]); 180cb1e1211SMatthew G Knepley 1819d8fbdeaSMatthew G. Knepley ctx[0] = dimEmbed; 182330485fdSToby Isaac ctx[1] = d; 1830709b2feSToby Isaac ierr = DMProjectFunction(dm, 0.0, &func, &voidctx, INSERT_VALUES, mode[d]);CHKERRQ(ierr); 184cb1e1211SMatthew G Knepley } 185cb1e1211SMatthew G Knepley for (i = 0; i < dim; ++i) {ierr = VecNormalize(mode[i], NULL);CHKERRQ(ierr);} 186cb1e1211SMatthew G Knepley /* Orthonormalize system */ 187cb1e1211SMatthew G Knepley for (i = dim; i < m; ++i) { 188cb1e1211SMatthew G Knepley PetscScalar dots[6]; 189cb1e1211SMatthew G Knepley 190cb1e1211SMatthew G Knepley ierr = VecMDot(mode[i], i, mode, dots);CHKERRQ(ierr); 191cb1e1211SMatthew G Knepley for (j = 0; j < i; ++j) dots[j] *= -1.0; 192cb1e1211SMatthew G Knepley ierr = VecMAXPY(mode[i], i, dots, mode);CHKERRQ(ierr); 193cb1e1211SMatthew G Knepley ierr = VecNormalize(mode[i], NULL);CHKERRQ(ierr); 194cb1e1211SMatthew G Knepley } 195cb1e1211SMatthew G Knepley ierr = MatNullSpaceCreate(comm, PETSC_FALSE, m, mode, sp);CHKERRQ(ierr); 196cb1e1211SMatthew G Knepley for (i = 0; i< m; ++i) {ierr = VecDestroy(&mode[i]);CHKERRQ(ierr);} 197cb1e1211SMatthew G Knepley PetscFunctionReturn(0); 198cb1e1211SMatthew G Knepley } 199cb1e1211SMatthew G Knepley 200b29cfa1cSToby Isaac /*@ 201b29cfa1cSToby Isaac DMPlexSetMaxProjectionHeight - In DMPlexProjectXXXLocal() functions, the projected values of a basis function's dofs 202b29cfa1cSToby Isaac are computed by associating the basis function with one of the mesh points in its transitively-closed support, and 203b29cfa1cSToby Isaac evaluating the dual space basis of that point. A basis function is associated with the point in its 204b29cfa1cSToby Isaac transitively-closed support whose mesh height is highest (w.r.t. DAG height), but not greater than the maximum 205b29cfa1cSToby Isaac projection height, which is set with this function. By default, the maximum projection height is zero, which means 206b29cfa1cSToby Isaac that only mesh cells are used to project basis functions. A height of one, for example, evaluates a cell-interior 207b29cfa1cSToby Isaac basis functions using its cells dual space basis, but all other basis functions with the dual space basis of a face. 208b29cfa1cSToby Isaac 209b29cfa1cSToby Isaac Input Parameters: 210b29cfa1cSToby Isaac + dm - the DMPlex object 211b29cfa1cSToby Isaac - height - the maximum projection height >= 0 212b29cfa1cSToby Isaac 213b29cfa1cSToby Isaac Level: advanced 214b29cfa1cSToby Isaac 2154d6f44ffSToby Isaac .seealso: DMPlexGetMaxProjectionHeight(), DMProjectFunctionLocal(), DMProjectFunctionLabelLocal() 216b29cfa1cSToby Isaac @*/ 217b29cfa1cSToby Isaac PetscErrorCode DMPlexSetMaxProjectionHeight(DM dm, PetscInt height) 218b29cfa1cSToby Isaac { 219b29cfa1cSToby Isaac DM_Plex *plex = (DM_Plex *) dm->data; 220b29cfa1cSToby Isaac 221b29cfa1cSToby Isaac PetscFunctionBegin; 222b29cfa1cSToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 223b29cfa1cSToby Isaac plex->maxProjectionHeight = height; 224b29cfa1cSToby Isaac PetscFunctionReturn(0); 225b29cfa1cSToby Isaac } 226b29cfa1cSToby Isaac 227b29cfa1cSToby Isaac /*@ 228b29cfa1cSToby Isaac DMPlexGetMaxProjectionHeight - Get the maximum height (w.r.t. DAG) of mesh points used to evaluate dual bases in 229b29cfa1cSToby Isaac DMPlexProjectXXXLocal() functions. 230b29cfa1cSToby Isaac 231b29cfa1cSToby Isaac Input Parameters: 232b29cfa1cSToby Isaac . dm - the DMPlex object 233b29cfa1cSToby Isaac 234b29cfa1cSToby Isaac Output Parameters: 235b29cfa1cSToby Isaac . height - the maximum projection height 236b29cfa1cSToby Isaac 237b29cfa1cSToby Isaac Level: intermediate 238b29cfa1cSToby Isaac 2394d6f44ffSToby Isaac .seealso: DMPlexSetMaxProjectionHeight(), DMProjectFunctionLocal(), DMProjectFunctionLabelLocal() 240b29cfa1cSToby Isaac @*/ 241b29cfa1cSToby Isaac PetscErrorCode DMPlexGetMaxProjectionHeight(DM dm, PetscInt *height) 242b29cfa1cSToby Isaac { 243b29cfa1cSToby Isaac DM_Plex *plex = (DM_Plex *) dm->data; 244b29cfa1cSToby Isaac 245b29cfa1cSToby Isaac PetscFunctionBegin; 246b29cfa1cSToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 247b29cfa1cSToby Isaac *height = plex->maxProjectionHeight; 248b29cfa1cSToby Isaac PetscFunctionReturn(0); 249b29cfa1cSToby Isaac } 250b29cfa1cSToby Isaac 251*b278463cSMatthew G. Knepley /*@C 252*b278463cSMatthew G. Knepley DMPlexInsertBoundaryValuesEssential - Insert boundary values into a local vector 253*b278463cSMatthew G. Knepley 254*b278463cSMatthew G. Knepley Input Parameters: 255*b278463cSMatthew G. Knepley + dm - The DM, with a PetscDS that matches the problem being constrained 256*b278463cSMatthew G. Knepley . time - The time 257*b278463cSMatthew G. Knepley . field - The field to constrain 258*b278463cSMatthew G. Knepley . label - The DMLabel defining constrained points 259*b278463cSMatthew G. Knepley . numids - The number of DMLabel ids for constrained points 260*b278463cSMatthew G. Knepley . ids - An array of ids for constrained points 261*b278463cSMatthew G. Knepley . func - A pointwise function giving boundary values 262*b278463cSMatthew G. Knepley - ctx - An optional user context for bcFunc 263*b278463cSMatthew G. Knepley 264*b278463cSMatthew G. Knepley Output Parameter: 265*b278463cSMatthew G. Knepley . locX - A local vector to receives the boundary values 266*b278463cSMatthew G. Knepley 267*b278463cSMatthew G. Knepley Level: developer 268*b278463cSMatthew G. Knepley 269*b278463cSMatthew G. Knepley .seealso: DMPlexInsertBoundaryValuesEssentialField(), DMAddBoundary() 270*b278463cSMatthew G. Knepley @*/ 271*b278463cSMatthew G. Knepley PetscErrorCode DMPlexInsertBoundaryValuesEssential(DM dm, PetscReal time, PetscInt field, DMLabel label, PetscInt numids, const PetscInt ids[], PetscErrorCode (*func)(PetscInt, PetscReal, const PetscReal[], PetscInt, PetscScalar *, void *), void *ctx, Vec locX) 27255f2e967SMatthew G. Knepley { 2730163fd50SMatthew G. Knepley PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal x[], PetscInt, PetscScalar *u, void *ctx); 27455f2e967SMatthew G. Knepley void **ctxs; 275d7ddef95SMatthew G. Knepley PetscInt numFields; 276d7ddef95SMatthew G. Knepley PetscErrorCode ierr; 277d7ddef95SMatthew G. Knepley 278d7ddef95SMatthew G. Knepley PetscFunctionBegin; 279d7ddef95SMatthew G. Knepley ierr = DMGetNumFields(dm, &numFields);CHKERRQ(ierr); 280d7ddef95SMatthew G. Knepley ierr = PetscCalloc2(numFields,&funcs,numFields,&ctxs);CHKERRQ(ierr); 281d7ddef95SMatthew G. Knepley funcs[field] = func; 282d7ddef95SMatthew G. Knepley ctxs[field] = ctx; 2830709b2feSToby Isaac ierr = DMProjectFunctionLabelLocal(dm, time, label, numids, ids, funcs, ctxs, INSERT_BC_VALUES, locX);CHKERRQ(ierr); 284d7ddef95SMatthew G. Knepley ierr = PetscFree2(funcs,ctxs);CHKERRQ(ierr); 285d7ddef95SMatthew G. Knepley PetscFunctionReturn(0); 286d7ddef95SMatthew G. Knepley } 287d7ddef95SMatthew G. Knepley 288*b278463cSMatthew G. Knepley /*@C 289*b278463cSMatthew G. Knepley DMPlexInsertBoundaryValuesEssentialField - Insert boundary values into a local vector 290*b278463cSMatthew G. Knepley 291*b278463cSMatthew G. Knepley Input Parameters: 292*b278463cSMatthew G. Knepley + dm - The DM, with a PetscDS that matches the problem being constrained 293*b278463cSMatthew G. Knepley . time - The time 294*b278463cSMatthew G. Knepley . locU - A local vector with the input solution values 295*b278463cSMatthew G. Knepley . field - The field to constrain 296*b278463cSMatthew G. Knepley . label - The DMLabel defining constrained points 297*b278463cSMatthew G. Knepley . numids - The number of DMLabel ids for constrained points 298*b278463cSMatthew G. Knepley . ids - An array of ids for constrained points 299*b278463cSMatthew G. Knepley . func - A pointwise function giving boundary values 300*b278463cSMatthew G. Knepley - ctx - An optional user context for bcFunc 301*b278463cSMatthew G. Knepley 302*b278463cSMatthew G. Knepley Output Parameter: 303*b278463cSMatthew G. Knepley . locX - A local vector to receives the boundary values 304*b278463cSMatthew G. Knepley 305*b278463cSMatthew G. Knepley Level: developer 306*b278463cSMatthew G. Knepley 307*b278463cSMatthew G. Knepley .seealso: DMPlexInsertBoundaryValuesEssential(), DMAddBoundary() 308*b278463cSMatthew G. Knepley @*/ 309*b278463cSMatthew G. Knepley PetscErrorCode DMPlexInsertBoundaryValuesEssentialField(DM dm, PetscReal time, Vec locU, PetscInt field, DMLabel label, PetscInt numids, const PetscInt ids[], 310c60e475cSMatthew G. Knepley void (*func)(PetscInt, PetscInt, PetscInt, 311c60e475cSMatthew G. Knepley const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], 312c60e475cSMatthew G. Knepley const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], 313*b278463cSMatthew G. Knepley PetscReal, const PetscReal[], 314*b278463cSMatthew G. Knepley PetscScalar[]), 315*b278463cSMatthew G. Knepley void *ctx, Vec locX) 316c60e475cSMatthew G. Knepley { 317c60e475cSMatthew G. Knepley void (**funcs)(PetscInt, PetscInt, PetscInt, 318c60e475cSMatthew G. Knepley const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], 319c60e475cSMatthew G. Knepley const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], 320c60e475cSMatthew G. Knepley PetscReal, const PetscReal[], PetscScalar[]); 321c60e475cSMatthew G. Knepley void **ctxs; 322c60e475cSMatthew G. Knepley PetscInt numFields; 323c60e475cSMatthew G. Knepley PetscErrorCode ierr; 324c60e475cSMatthew G. Knepley 325c60e475cSMatthew G. Knepley PetscFunctionBegin; 326c60e475cSMatthew G. Knepley ierr = DMGetNumFields(dm, &numFields);CHKERRQ(ierr); 327c60e475cSMatthew G. Knepley ierr = PetscCalloc2(numFields,&funcs,numFields,&ctxs);CHKERRQ(ierr); 328c60e475cSMatthew G. Knepley funcs[field] = func; 329c60e475cSMatthew G. Knepley ctxs[field] = ctx; 330c60e475cSMatthew G. Knepley ierr = DMProjectFieldLabelLocal(dm, time, label, numids, ids, locU, funcs, INSERT_BC_VALUES, locX);CHKERRQ(ierr); 331c60e475cSMatthew G. Knepley ierr = PetscFree2(funcs,ctxs);CHKERRQ(ierr); 332c60e475cSMatthew G. Knepley PetscFunctionReturn(0); 333c60e475cSMatthew G. Knepley } 334c60e475cSMatthew G. Knepley 335*b278463cSMatthew G. Knepley /*@C 336*b278463cSMatthew G. Knepley DMPlexInsertBoundaryValuesRiemann - Insert boundary values into a local vector 337*b278463cSMatthew G. Knepley 338*b278463cSMatthew G. Knepley Input Parameters: 339*b278463cSMatthew G. Knepley + dm - The DM, with a PetscDS that matches the problem being constrained 340*b278463cSMatthew G. Knepley . time - The time 341*b278463cSMatthew G. Knepley . faceGeometry - A vector with the FVM face geometry information 342*b278463cSMatthew G. Knepley . cellGeometry - A vector with the FVM cell geometry information 343*b278463cSMatthew G. Knepley . Grad - A vector with the FVM cell gradient information 344*b278463cSMatthew G. Knepley . field - The field to constrain 345*b278463cSMatthew G. Knepley . label - The DMLabel defining constrained points 346*b278463cSMatthew G. Knepley . numids - The number of DMLabel ids for constrained points 347*b278463cSMatthew G. Knepley . ids - An array of ids for constrained points 348*b278463cSMatthew G. Knepley . func - A pointwise function giving boundary values 349*b278463cSMatthew G. Knepley - ctx - An optional user context for bcFunc 350*b278463cSMatthew G. Knepley 351*b278463cSMatthew G. Knepley Output Parameter: 352*b278463cSMatthew G. Knepley . locX - A local vector to receives the boundary values 353*b278463cSMatthew G. Knepley 354*b278463cSMatthew G. Knepley Note: This implementation currently ignores the numcomps/comps argument from DMAddBoundary() 355*b278463cSMatthew G. Knepley 356*b278463cSMatthew G. Knepley Level: developer 357*b278463cSMatthew G. Knepley 358*b278463cSMatthew G. Knepley .seealso: DMPlexInsertBoundaryValuesEssential(), DMPlexInsertBoundaryValuesEssentialField(), DMAddBoundary() 359*b278463cSMatthew G. Knepley @*/ 360*b278463cSMatthew G. Knepley PetscErrorCode DMPlexInsertBoundaryValuesRiemann(DM dm, PetscReal time, Vec faceGeometry, Vec cellGeometry, Vec Grad, PetscInt field, DMLabel label, PetscInt numids, const PetscInt ids[], 361*b278463cSMatthew G. Knepley PetscErrorCode (*func)(PetscReal,const PetscReal*,const PetscReal*,const PetscScalar*,PetscScalar*,void*), void *ctx, Vec locX) 362d7ddef95SMatthew G. Knepley { 36361f58d28SMatthew G. Knepley PetscDS prob; 364da97024aSMatthew G. Knepley PetscSF sf; 365d7ddef95SMatthew G. Knepley DM dmFace, dmCell, dmGrad; 36620369375SToby Isaac const PetscScalar *facegeom, *cellgeom = NULL, *grad; 367da97024aSMatthew G. Knepley const PetscInt *leaves; 368d7ddef95SMatthew G. Knepley PetscScalar *x, *fx; 369520b3818SMatthew G. Knepley PetscInt dim, nleaves, loc, fStart, fEnd, pdim, i; 370e735a8a9SMatthew G. Knepley PetscErrorCode ierr, ierru = 0; 371d7ddef95SMatthew G. Knepley 372d7ddef95SMatthew G. Knepley PetscFunctionBegin; 373da97024aSMatthew G. Knepley ierr = DMGetPointSF(dm, &sf);CHKERRQ(ierr); 374da97024aSMatthew G. Knepley ierr = PetscSFGetGraph(sf, NULL, &nleaves, &leaves, NULL);CHKERRQ(ierr); 375da97024aSMatthew G. Knepley nleaves = PetscMax(0, nleaves); 376d7ddef95SMatthew G. Knepley ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr); 377d7ddef95SMatthew G. Knepley ierr = DMPlexGetHeightStratum(dm, 1, &fStart, &fEnd);CHKERRQ(ierr); 37861f58d28SMatthew G. Knepley ierr = DMGetDS(dm, &prob);CHKERRQ(ierr); 379d7ddef95SMatthew G. Knepley ierr = VecGetDM(faceGeometry, &dmFace);CHKERRQ(ierr); 380d7ddef95SMatthew G. Knepley ierr = VecGetArrayRead(faceGeometry, &facegeom);CHKERRQ(ierr); 38120369375SToby Isaac if (cellGeometry) { 382d7ddef95SMatthew G. Knepley ierr = VecGetDM(cellGeometry, &dmCell);CHKERRQ(ierr); 383d7ddef95SMatthew G. Knepley ierr = VecGetArrayRead(cellGeometry, &cellgeom);CHKERRQ(ierr); 38420369375SToby Isaac } 385d7ddef95SMatthew G. Knepley if (Grad) { 386c0a6632aSMatthew G. Knepley PetscFV fv; 387c0a6632aSMatthew G. Knepley 388c0a6632aSMatthew G. Knepley ierr = PetscDSGetDiscretization(prob, field, (PetscObject *) &fv);CHKERRQ(ierr); 389d7ddef95SMatthew G. Knepley ierr = VecGetDM(Grad, &dmGrad);CHKERRQ(ierr); 390d7ddef95SMatthew G. Knepley ierr = VecGetArrayRead(Grad, &grad);CHKERRQ(ierr); 391d7ddef95SMatthew G. Knepley ierr = PetscFVGetNumComponents(fv, &pdim);CHKERRQ(ierr); 392d7ddef95SMatthew G. Knepley ierr = DMGetWorkArray(dm, pdim, PETSC_SCALAR, &fx);CHKERRQ(ierr); 393d7ddef95SMatthew G. Knepley } 394d7ddef95SMatthew G. Knepley ierr = VecGetArray(locX, &x);CHKERRQ(ierr); 395d7ddef95SMatthew G. Knepley for (i = 0; i < numids; ++i) { 396d7ddef95SMatthew G. Knepley IS faceIS; 397d7ddef95SMatthew G. Knepley const PetscInt *faces; 398d7ddef95SMatthew G. Knepley PetscInt numFaces, f; 399d7ddef95SMatthew G. Knepley 400d7ddef95SMatthew G. Knepley ierr = DMLabelGetStratumIS(label, ids[i], &faceIS);CHKERRQ(ierr); 401d7ddef95SMatthew G. Knepley if (!faceIS) continue; /* No points with that id on this process */ 402d7ddef95SMatthew G. Knepley ierr = ISGetLocalSize(faceIS, &numFaces);CHKERRQ(ierr); 403d7ddef95SMatthew G. Knepley ierr = ISGetIndices(faceIS, &faces);CHKERRQ(ierr); 404d7ddef95SMatthew G. Knepley for (f = 0; f < numFaces; ++f) { 405d7ddef95SMatthew G. Knepley const PetscInt face = faces[f], *cells; 406640bce14SSatish Balay PetscFVFaceGeom *fg; 407d7ddef95SMatthew G. Knepley 408d7ddef95SMatthew G. Knepley if ((face < fStart) || (face >= fEnd)) continue; /* Refinement adds non-faces to labels */ 409da97024aSMatthew G. Knepley ierr = PetscFindInt(face, nleaves, (PetscInt *) leaves, &loc);CHKERRQ(ierr); 410da97024aSMatthew G. Knepley if (loc >= 0) continue; 411d7ddef95SMatthew G. Knepley ierr = DMPlexPointLocalRead(dmFace, face, facegeom, &fg);CHKERRQ(ierr); 412d7ddef95SMatthew G. Knepley ierr = DMPlexGetSupport(dm, face, &cells);CHKERRQ(ierr); 413d7ddef95SMatthew G. Knepley if (Grad) { 414640bce14SSatish Balay PetscFVCellGeom *cg; 415640bce14SSatish Balay PetscScalar *cx, *cgrad; 416d7ddef95SMatthew G. Knepley PetscScalar *xG; 417d7ddef95SMatthew G. Knepley PetscReal dx[3]; 418d7ddef95SMatthew G. Knepley PetscInt d; 419d7ddef95SMatthew G. Knepley 420d7ddef95SMatthew G. Knepley ierr = DMPlexPointLocalRead(dmCell, cells[0], cellgeom, &cg);CHKERRQ(ierr); 421d7ddef95SMatthew G. Knepley ierr = DMPlexPointLocalRead(dm, cells[0], x, &cx);CHKERRQ(ierr); 422d7ddef95SMatthew G. Knepley ierr = DMPlexPointLocalRead(dmGrad, cells[0], grad, &cgrad);CHKERRQ(ierr); 423520b3818SMatthew G. Knepley ierr = DMPlexPointLocalFieldRef(dm, cells[1], field, x, &xG);CHKERRQ(ierr); 424d7ddef95SMatthew G. Knepley DMPlex_WaxpyD_Internal(dim, -1, cg->centroid, fg->centroid, dx); 425d7ddef95SMatthew G. Knepley for (d = 0; d < pdim; ++d) fx[d] = cx[d] + DMPlex_DotD_Internal(dim, &cgrad[d*dim], dx); 426e735a8a9SMatthew G. Knepley ierru = (*func)(time, fg->centroid, fg->normal, fx, xG, ctx); 427e735a8a9SMatthew G. Knepley if (ierru) { 428e735a8a9SMatthew G. Knepley ierr = ISRestoreIndices(faceIS, &faces);CHKERRQ(ierr); 429e735a8a9SMatthew G. Knepley ierr = ISDestroy(&faceIS);CHKERRQ(ierr); 430e735a8a9SMatthew G. Knepley goto cleanup; 431e735a8a9SMatthew G. Knepley } 432d7ddef95SMatthew G. Knepley } else { 433640bce14SSatish Balay PetscScalar *xI; 434d7ddef95SMatthew G. Knepley PetscScalar *xG; 435d7ddef95SMatthew G. Knepley 436d7ddef95SMatthew G. Knepley ierr = DMPlexPointLocalRead(dm, cells[0], x, &xI);CHKERRQ(ierr); 437520b3818SMatthew G. Knepley ierr = DMPlexPointLocalFieldRef(dm, cells[1], field, x, &xG);CHKERRQ(ierr); 438e735a8a9SMatthew G. Knepley ierru = (*func)(time, fg->centroid, fg->normal, xI, xG, ctx); 439e735a8a9SMatthew G. Knepley if (ierru) { 440e735a8a9SMatthew G. Knepley ierr = ISRestoreIndices(faceIS, &faces);CHKERRQ(ierr); 441e735a8a9SMatthew G. Knepley ierr = ISDestroy(&faceIS);CHKERRQ(ierr); 442e735a8a9SMatthew G. Knepley goto cleanup; 443e735a8a9SMatthew G. Knepley } 444d7ddef95SMatthew G. Knepley } 445d7ddef95SMatthew G. Knepley } 446d7ddef95SMatthew G. Knepley ierr = ISRestoreIndices(faceIS, &faces);CHKERRQ(ierr); 447d7ddef95SMatthew G. Knepley ierr = ISDestroy(&faceIS);CHKERRQ(ierr); 448d7ddef95SMatthew G. Knepley } 449e735a8a9SMatthew G. Knepley cleanup: 450d7ddef95SMatthew G. Knepley ierr = VecRestoreArray(locX, &x);CHKERRQ(ierr); 451d7ddef95SMatthew G. Knepley if (Grad) { 452d7ddef95SMatthew G. Knepley ierr = DMRestoreWorkArray(dm, pdim, PETSC_SCALAR, &fx);CHKERRQ(ierr); 453d7ddef95SMatthew G. Knepley ierr = VecRestoreArrayRead(Grad, &grad);CHKERRQ(ierr); 454d7ddef95SMatthew G. Knepley } 455e735a8a9SMatthew G. Knepley if (cellGeometry) {ierr = VecRestoreArrayRead(cellGeometry, &cellgeom);CHKERRQ(ierr);} 456d7ddef95SMatthew G. Knepley ierr = VecRestoreArrayRead(faceGeometry, &facegeom);CHKERRQ(ierr); 457e735a8a9SMatthew G. Knepley CHKERRQ(ierru); 458d7ddef95SMatthew G. Knepley PetscFunctionReturn(0); 459d7ddef95SMatthew G. Knepley } 460d7ddef95SMatthew G. Knepley 4619d24f7bbSMatthew G. Knepley /*@ 4629d24f7bbSMatthew G. Knepley DMPlexInsertBoundaryValues - Puts coefficients which represent boundary values into the local solution vector 4639d24f7bbSMatthew G. Knepley 4649d24f7bbSMatthew G. Knepley Input Parameters: 4659d24f7bbSMatthew G. Knepley + dm - The DM 4669d24f7bbSMatthew G. Knepley . insertEssential - Should I insert essential (e.g. Dirichlet) or inessential (e.g. Neumann) boundary conditions 4679d24f7bbSMatthew G. Knepley . time - The time 4689d24f7bbSMatthew G. Knepley . faceGeomFVM - Face geometry data for FV discretizations 4699d24f7bbSMatthew G. Knepley . cellGeomFVM - Cell geometry data for FV discretizations 4709d24f7bbSMatthew G. Knepley - gradFVM - Gradient reconstruction data for FV discretizations 4719d24f7bbSMatthew G. Knepley 4729d24f7bbSMatthew G. Knepley Output Parameters: 4739d24f7bbSMatthew G. Knepley . locX - Solution updated with boundary values 4749d24f7bbSMatthew G. Knepley 4759d24f7bbSMatthew G. Knepley Level: developer 4769d24f7bbSMatthew G. Knepley 4779d24f7bbSMatthew G. Knepley .seealso: DMProjectFunctionLabelLocal() 4789d24f7bbSMatthew G. Knepley @*/ 479bdd6f66aSToby Isaac PetscErrorCode DMPlexInsertBoundaryValues(DM dm, PetscBool insertEssential, Vec locX, PetscReal time, Vec faceGeomFVM, Vec cellGeomFVM, Vec gradFVM) 480d7ddef95SMatthew G. Knepley { 481d7ddef95SMatthew G. Knepley PetscInt numBd, b; 48255f2e967SMatthew G. Knepley PetscErrorCode ierr; 48355f2e967SMatthew G. Knepley 48455f2e967SMatthew G. Knepley PetscFunctionBegin; 48555f2e967SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 486d7ddef95SMatthew G. Knepley PetscValidHeaderSpecific(locX, VEC_CLASSID, 2); 487d7ddef95SMatthew G. Knepley if (faceGeomFVM) {PetscValidHeaderSpecific(faceGeomFVM, VEC_CLASSID, 4);} 488d7ddef95SMatthew G. Knepley if (cellGeomFVM) {PetscValidHeaderSpecific(cellGeomFVM, VEC_CLASSID, 5);} 489d7ddef95SMatthew G. Knepley if (gradFVM) {PetscValidHeaderSpecific(gradFVM, VEC_CLASSID, 6);} 490dff059c6SToby Isaac ierr = PetscDSGetNumBoundary(dm->prob, &numBd);CHKERRQ(ierr); 49155f2e967SMatthew G. Knepley for (b = 0; b < numBd; ++b) { 492f971fd6bSMatthew G. Knepley DMBoundaryConditionType type; 493d7ddef95SMatthew G. Knepley const char *labelname; 494d7ddef95SMatthew G. Knepley DMLabel label; 495d7ddef95SMatthew G. Knepley PetscInt field; 496d7ddef95SMatthew G. Knepley PetscObject obj; 497d7ddef95SMatthew G. Knepley PetscClassId id; 49855f2e967SMatthew G. Knepley void (*func)(); 499d7ddef95SMatthew G. Knepley PetscInt numids; 500d7ddef95SMatthew G. Knepley const PetscInt *ids; 50155f2e967SMatthew G. Knepley void *ctx; 50255f2e967SMatthew G. Knepley 503f971fd6bSMatthew G. Knepley ierr = DMGetBoundary(dm, b, &type, NULL, &labelname, &field, NULL, NULL, &func, &numids, &ids, &ctx);CHKERRQ(ierr); 504f971fd6bSMatthew G. Knepley if (insertEssential != (type & DM_BC_ESSENTIAL)) continue; 505c58f1c22SToby Isaac ierr = DMGetLabel(dm, labelname, &label);CHKERRQ(ierr); 506d7ddef95SMatthew G. Knepley ierr = DMGetField(dm, field, &obj);CHKERRQ(ierr); 507d7ddef95SMatthew G. Knepley ierr = PetscObjectGetClassId(obj, &id);CHKERRQ(ierr); 508d7ddef95SMatthew G. Knepley if (id == PETSCFE_CLASSID) { 509c60e475cSMatthew G. Knepley switch (type) { 510c60e475cSMatthew G. Knepley /* for FEM, there is no insertion to be done for non-essential boundary conditions */ 511c60e475cSMatthew G. Knepley case DM_BC_ESSENTIAL: 512092e5057SToby Isaac ierr = DMPlexLabelAddCells(dm,label);CHKERRQ(ierr); 513*b278463cSMatthew G. Knepley ierr = DMPlexInsertBoundaryValuesEssential(dm, time, field, label, numids, ids, (PetscErrorCode (*)(PetscInt, PetscReal, const PetscReal[], PetscInt, PetscScalar *, void *)) func, ctx, locX);CHKERRQ(ierr); 514092e5057SToby Isaac ierr = DMPlexLabelClearCells(dm,label);CHKERRQ(ierr); 515c60e475cSMatthew G. Knepley break; 516c60e475cSMatthew G. Knepley case DM_BC_ESSENTIAL_FIELD: 517c60e475cSMatthew G. Knepley ierr = DMPlexLabelAddCells(dm,label);CHKERRQ(ierr); 518*b278463cSMatthew G. Knepley ierr = DMPlexInsertBoundaryValuesEssentialField(dm, time, locX, field, label, numids, ids, 519*b278463cSMatthew G. Knepley (void (*)(PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], 520c60e475cSMatthew G. Knepley const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], 521c60e475cSMatthew G. Knepley PetscReal, const PetscReal[], PetscScalar[])) func, ctx, locX);CHKERRQ(ierr); 522c60e475cSMatthew G. Knepley ierr = DMPlexLabelClearCells(dm,label);CHKERRQ(ierr); 523c60e475cSMatthew G. Knepley break; 524c60e475cSMatthew G. Knepley default: break; 525c60e475cSMatthew G. Knepley } 526d7ddef95SMatthew G. Knepley } else if (id == PETSCFV_CLASSID) { 52743ea7facSMatthew G. Knepley if (!faceGeomFVM) continue; 528*b278463cSMatthew G. Knepley ierr = DMPlexInsertBoundaryValuesRiemann(dm, time, faceGeomFVM, cellGeomFVM, gradFVM, field, label, numids, ids, 529*b278463cSMatthew G. Knepley (PetscErrorCode (*)(PetscReal,const PetscReal*,const PetscReal*,const PetscScalar*,PetscScalar*,void*)) func, ctx, locX);CHKERRQ(ierr); 530d7ddef95SMatthew G. Knepley } else SETERRQ1(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %d", field); 53155f2e967SMatthew G. Knepley } 53255f2e967SMatthew G. Knepley PetscFunctionReturn(0); 53355f2e967SMatthew G. Knepley } 53455f2e967SMatthew G. Knepley 5350709b2feSToby Isaac PetscErrorCode DMComputeL2Diff_Plex(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal [], PetscInt, PetscScalar *, void *), void **ctxs, Vec X, PetscReal *diff) 536cb1e1211SMatthew G Knepley { 537cb1e1211SMatthew G Knepley const PetscInt debug = 0; 538cb1e1211SMatthew G Knepley PetscSection section; 539c5bbbd5bSMatthew G. Knepley PetscQuadrature quad; 540cb1e1211SMatthew G Knepley Vec localX; 54115496722SMatthew G. Knepley PetscScalar *funcVal, *interpolant; 5427318780aSToby Isaac PetscReal *coords, *detJ, *J; 543cb1e1211SMatthew G Knepley PetscReal localDiff = 0.0; 5447318780aSToby Isaac const PetscReal *quadWeights; 5457318780aSToby Isaac PetscInt dim, coordDim, numFields, numComponents = 0, Nq, cStart, cEnd, cEndInterior, c, field, fieldOffset; 546cb1e1211SMatthew G Knepley PetscErrorCode ierr; 547cb1e1211SMatthew G Knepley 548cb1e1211SMatthew G Knepley PetscFunctionBegin; 549c73cfb54SMatthew G. Knepley ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr); 5507318780aSToby Isaac ierr = DMGetCoordinateDim(dm, &coordDim);CHKERRQ(ierr); 551cb1e1211SMatthew G Knepley ierr = DMGetDefaultSection(dm, §ion);CHKERRQ(ierr); 552cb1e1211SMatthew G Knepley ierr = PetscSectionGetNumFields(section, &numFields);CHKERRQ(ierr); 553cb1e1211SMatthew G Knepley ierr = DMGetLocalVector(dm, &localX);CHKERRQ(ierr); 554bdd6f66aSToby Isaac ierr = DMProjectFunctionLocal(dm, time, funcs, ctxs, INSERT_BC_VALUES, localX);CHKERRQ(ierr); 555cb1e1211SMatthew G Knepley ierr = DMGlobalToLocalBegin(dm, X, INSERT_VALUES, localX);CHKERRQ(ierr); 556cb1e1211SMatthew G Knepley ierr = DMGlobalToLocalEnd(dm, X, INSERT_VALUES, localX);CHKERRQ(ierr); 557cb1e1211SMatthew G Knepley for (field = 0; field < numFields; ++field) { 55815496722SMatthew G. Knepley PetscObject obj; 55915496722SMatthew G. Knepley PetscClassId id; 560c5bbbd5bSMatthew G. Knepley PetscInt Nc; 561c5bbbd5bSMatthew G. Knepley 56215496722SMatthew G. Knepley ierr = DMGetField(dm, field, &obj);CHKERRQ(ierr); 56315496722SMatthew G. Knepley ierr = PetscObjectGetClassId(obj, &id);CHKERRQ(ierr); 56415496722SMatthew G. Knepley if (id == PETSCFE_CLASSID) { 56515496722SMatthew G. Knepley PetscFE fe = (PetscFE) obj; 56615496722SMatthew G. Knepley 5670f2d7e86SMatthew G. Knepley ierr = PetscFEGetQuadrature(fe, &quad);CHKERRQ(ierr); 5680f2d7e86SMatthew G. Knepley ierr = PetscFEGetNumComponents(fe, &Nc);CHKERRQ(ierr); 56915496722SMatthew G. Knepley } else if (id == PETSCFV_CLASSID) { 57015496722SMatthew G. Knepley PetscFV fv = (PetscFV) obj; 57115496722SMatthew G. Knepley 57215496722SMatthew G. Knepley ierr = PetscFVGetQuadrature(fv, &quad);CHKERRQ(ierr); 57315496722SMatthew G. Knepley ierr = PetscFVGetNumComponents(fv, &Nc);CHKERRQ(ierr); 57415496722SMatthew G. Knepley } else SETERRQ1(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %d", field); 575c5bbbd5bSMatthew G. Knepley numComponents += Nc; 576cb1e1211SMatthew G Knepley } 5777318780aSToby Isaac ierr = PetscQuadratureGetData(quad, NULL, &Nq, NULL, &quadWeights);CHKERRQ(ierr); 5787318780aSToby Isaac ierr = PetscMalloc5(numComponents,&funcVal,numComponents,&interpolant,coordDim*Nq,&coords,Nq,&detJ,coordDim*coordDim*Nq,&J);CHKERRQ(ierr); 579cb1e1211SMatthew G Knepley ierr = DMPlexGetHeightStratum(dm, 0, &cStart, &cEnd);CHKERRQ(ierr); 5809ac3fadcSMatthew G. Knepley ierr = DMPlexGetHybridBounds(dm, &cEndInterior, NULL, NULL, NULL);CHKERRQ(ierr); 5819ac3fadcSMatthew G. Knepley cEnd = cEndInterior < 0 ? cEnd : cEndInterior; 582cb1e1211SMatthew G Knepley for (c = cStart; c < cEnd; ++c) { 583a1e44745SMatthew G. Knepley PetscScalar *x = NULL; 584cb1e1211SMatthew G Knepley PetscReal elemDiff = 0.0; 585cb1e1211SMatthew G Knepley 5867318780aSToby Isaac ierr = DMPlexComputeCellGeometryFEM(dm, c, quad, coords, J, NULL, detJ);CHKERRQ(ierr); 587cb1e1211SMatthew G Knepley ierr = DMPlexVecGetClosure(dm, NULL, localX, c, NULL, &x);CHKERRQ(ierr); 588cb1e1211SMatthew G Knepley 58915496722SMatthew G. Knepley for (field = 0, fieldOffset = 0; field < numFields; ++field) { 59015496722SMatthew G. Knepley PetscObject obj; 59115496722SMatthew G. Knepley PetscClassId id; 592c110b1eeSGeoffrey Irving void * const ctx = ctxs ? ctxs[field] : NULL; 59315496722SMatthew G. Knepley PetscInt Nb, Nc, q, fc; 594cb1e1211SMatthew G Knepley 59515496722SMatthew G. Knepley ierr = DMGetField(dm, field, &obj);CHKERRQ(ierr); 59615496722SMatthew G. Knepley ierr = PetscObjectGetClassId(obj, &id);CHKERRQ(ierr); 59715496722SMatthew G. Knepley if (id == PETSCFE_CLASSID) {ierr = PetscFEGetNumComponents((PetscFE) obj, &Nc);CHKERRQ(ierr);ierr = PetscFEGetDimension((PetscFE) obj, &Nb);CHKERRQ(ierr);} 59815496722SMatthew G. Knepley else if (id == PETSCFV_CLASSID) {ierr = PetscFVGetNumComponents((PetscFV) obj, &Nc);CHKERRQ(ierr);Nb = 1;} 59915496722SMatthew G. Knepley else SETERRQ1(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %d", field); 600cb1e1211SMatthew G Knepley if (debug) { 601cb1e1211SMatthew G Knepley char title[1024]; 602cb1e1211SMatthew G Knepley ierr = PetscSNPrintf(title, 1023, "Solution for Field %d", field);CHKERRQ(ierr); 60315496722SMatthew G. Knepley ierr = DMPrintCellVector(c, title, Nb*Nc, &x[fieldOffset]);CHKERRQ(ierr); 604cb1e1211SMatthew G Knepley } 6057318780aSToby Isaac for (q = 0; q < Nq; ++q) { 6067318780aSToby Isaac if (detJ[q] <= 0.0) SETERRQ3(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Invalid determinant %g for element %D, point %D", detJ[q], c, q); 6077318780aSToby Isaac ierr = (*funcs[field])(coordDim, time, &coords[coordDim * q], Nc, funcVal, ctx); 608e735a8a9SMatthew G. Knepley if (ierr) { 609e735a8a9SMatthew G. Knepley PetscErrorCode ierr2; 610e735a8a9SMatthew G. Knepley ierr2 = DMPlexVecRestoreClosure(dm, NULL, localX, c, NULL, &x);CHKERRQ(ierr2); 611e735a8a9SMatthew G. Knepley ierr2 = DMRestoreLocalVector(dm, &localX);CHKERRQ(ierr2); 6127318780aSToby Isaac ierr2 = PetscFree5(funcVal,interpolant,coords,detJ,J);CHKERRQ(ierr2); 613e735a8a9SMatthew G. Knepley CHKERRQ(ierr); 614e735a8a9SMatthew G. Knepley } 61515496722SMatthew G. Knepley if (id == PETSCFE_CLASSID) {ierr = PetscFEInterpolate_Static((PetscFE) obj, &x[fieldOffset], q, interpolant);CHKERRQ(ierr);} 61615496722SMatthew G. Knepley else if (id == PETSCFV_CLASSID) {ierr = PetscFVInterpolate_Static((PetscFV) obj, &x[fieldOffset], q, interpolant);CHKERRQ(ierr);} 61715496722SMatthew G. Knepley else SETERRQ1(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %d", field); 61815496722SMatthew G. Knepley for (fc = 0; fc < Nc; ++fc) { 6197318780aSToby Isaac if (debug) {ierr = PetscPrintf(PETSC_COMM_SELF, " elem %d field %d diff %g\n", c, field, PetscSqr(PetscRealPart(interpolant[fc] - funcVal[fc]))*quadWeights[q]*detJ[q]);CHKERRQ(ierr);} 6207318780aSToby Isaac elemDiff += PetscSqr(PetscRealPart(interpolant[fc] - funcVal[fc]))*quadWeights[q]*detJ[q]; 621cb1e1211SMatthew G Knepley } 622cb1e1211SMatthew G Knepley } 62315496722SMatthew G. Knepley fieldOffset += Nb*Nc; 624cb1e1211SMatthew G Knepley } 625cb1e1211SMatthew G Knepley ierr = DMPlexVecRestoreClosure(dm, NULL, localX, c, NULL, &x);CHKERRQ(ierr); 626cb1e1211SMatthew G Knepley if (debug) {ierr = PetscPrintf(PETSC_COMM_SELF, " elem %d diff %g\n", c, elemDiff);CHKERRQ(ierr);} 627cb1e1211SMatthew G Knepley localDiff += elemDiff; 628cb1e1211SMatthew G Knepley } 6297318780aSToby Isaac ierr = PetscFree5(funcVal,interpolant,coords,detJ,J);CHKERRQ(ierr); 630cb1e1211SMatthew G Knepley ierr = DMRestoreLocalVector(dm, &localX);CHKERRQ(ierr); 631b2566f29SBarry Smith ierr = MPIU_Allreduce(&localDiff, diff, 1, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)dm));CHKERRQ(ierr); 632cb1e1211SMatthew G Knepley *diff = PetscSqrtReal(*diff); 633cb1e1211SMatthew G Knepley PetscFunctionReturn(0); 634cb1e1211SMatthew G Knepley } 635cb1e1211SMatthew G Knepley 636b698f381SToby Isaac PetscErrorCode DMComputeL2GradientDiff_Plex(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal [], const PetscReal [], PetscInt, PetscScalar *, void *), void **ctxs, Vec X, const PetscReal n[], PetscReal *diff) 637cb1e1211SMatthew G Knepley { 63840e14135SMatthew G. Knepley const PetscInt debug = 0; 639cb1e1211SMatthew G Knepley PetscSection section; 64040e14135SMatthew G. Knepley PetscQuadrature quad; 64140e14135SMatthew G. Knepley Vec localX; 64240e14135SMatthew G. Knepley PetscScalar *funcVal, *interpolantVec; 6437318780aSToby Isaac PetscReal *coords, *realSpaceDer, *J, *invJ, *detJ; 64440e14135SMatthew G. Knepley PetscReal localDiff = 0.0; 6457318780aSToby Isaac PetscInt dim, coordDim, Nq = 0, numFields, numComponents = 0, cStart, cEnd, cEndInterior, c, field, fieldOffset, comp; 646cb1e1211SMatthew G Knepley PetscErrorCode ierr; 647cb1e1211SMatthew G Knepley 648cb1e1211SMatthew G Knepley PetscFunctionBegin; 649c73cfb54SMatthew G. Knepley ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr); 6507318780aSToby Isaac ierr = DMGetCoordinateDim(dm, &coordDim);CHKERRQ(ierr); 65140e14135SMatthew G. Knepley ierr = DMGetDefaultSection(dm, §ion);CHKERRQ(ierr); 65240e14135SMatthew G. Knepley ierr = PetscSectionGetNumFields(section, &numFields);CHKERRQ(ierr); 65340e14135SMatthew G. Knepley ierr = DMGetLocalVector(dm, &localX);CHKERRQ(ierr); 65440e14135SMatthew G. Knepley ierr = DMGlobalToLocalBegin(dm, X, INSERT_VALUES, localX);CHKERRQ(ierr); 65540e14135SMatthew G. Knepley ierr = DMGlobalToLocalEnd(dm, X, INSERT_VALUES, localX);CHKERRQ(ierr); 656652b88e8SMatthew G. Knepley for (field = 0; field < numFields; ++field) { 6570f2d7e86SMatthew G. Knepley PetscFE fe; 65840e14135SMatthew G. Knepley PetscInt Nc; 659652b88e8SMatthew G. Knepley 6600f2d7e86SMatthew G. Knepley ierr = DMGetField(dm, field, (PetscObject *) &fe);CHKERRQ(ierr); 6610f2d7e86SMatthew G. Knepley ierr = PetscFEGetQuadrature(fe, &quad);CHKERRQ(ierr); 6627318780aSToby Isaac ierr = PetscQuadratureGetData(quad, NULL, &Nq, NULL, NULL);CHKERRQ(ierr); 6630f2d7e86SMatthew G. Knepley ierr = PetscFEGetNumComponents(fe, &Nc);CHKERRQ(ierr); 66440e14135SMatthew G. Knepley numComponents += Nc; 665652b88e8SMatthew G. Knepley } 6664d6f44ffSToby Isaac /* ierr = DMProjectFunctionLocal(dm, fe, funcs, INSERT_BC_VALUES, localX);CHKERRQ(ierr); */ 6677318780aSToby Isaac ierr = PetscMalloc7(numComponents,&funcVal,coordDim*Nq,&coords,coordDim*Nq,&realSpaceDer,coordDim*coordDim*Nq,&J,coordDim*coordDim*Nq,&invJ,coordDim,&interpolantVec,Nq,&detJ);CHKERRQ(ierr); 66840e14135SMatthew G. Knepley ierr = DMPlexGetHeightStratum(dm, 0, &cStart, &cEnd);CHKERRQ(ierr); 6699ac3fadcSMatthew G. Knepley ierr = DMPlexGetHybridBounds(dm, &cEndInterior, NULL, NULL, NULL);CHKERRQ(ierr); 6709ac3fadcSMatthew G. Knepley cEnd = cEndInterior < 0 ? cEnd : cEndInterior; 67140e14135SMatthew G. Knepley for (c = cStart; c < cEnd; ++c) { 67240e14135SMatthew G. Knepley PetscScalar *x = NULL; 67340e14135SMatthew G. Knepley PetscReal elemDiff = 0.0; 674652b88e8SMatthew G. Knepley 6757318780aSToby Isaac ierr = DMPlexComputeCellGeometryFEM(dm, c, quad, coords, J, invJ, detJ);CHKERRQ(ierr); 67640e14135SMatthew G. Knepley ierr = DMPlexVecGetClosure(dm, NULL, localX, c, NULL, &x);CHKERRQ(ierr); 67740e14135SMatthew G. Knepley 67840e14135SMatthew G. Knepley for (field = 0, comp = 0, fieldOffset = 0; field < numFields; ++field) { 6790f2d7e86SMatthew G. Knepley PetscFE fe; 68051259fa3SMatthew G. Knepley void * const ctx = ctxs ? ctxs[field] : NULL; 68121454ff5SMatthew G. Knepley const PetscReal *quadPoints, *quadWeights; 68240e14135SMatthew G. Knepley PetscReal *basisDer; 6837318780aSToby Isaac PetscInt numQuadPoints, Nb, Ncomp, q, d, fc, f, g; 68440e14135SMatthew G. Knepley 6850f2d7e86SMatthew G. Knepley ierr = DMGetField(dm, field, (PetscObject *) &fe);CHKERRQ(ierr); 68621454ff5SMatthew G. Knepley ierr = PetscQuadratureGetData(quad, NULL, &numQuadPoints, &quadPoints, &quadWeights);CHKERRQ(ierr); 6870f2d7e86SMatthew G. Knepley ierr = PetscFEGetDimension(fe, &Nb);CHKERRQ(ierr); 6880f2d7e86SMatthew G. Knepley ierr = PetscFEGetNumComponents(fe, &Ncomp);CHKERRQ(ierr); 6890f2d7e86SMatthew G. Knepley ierr = PetscFEGetDefaultTabulation(fe, NULL, &basisDer, NULL);CHKERRQ(ierr); 69040e14135SMatthew G. Knepley if (debug) { 69140e14135SMatthew G. Knepley char title[1024]; 69240e14135SMatthew G. Knepley ierr = PetscSNPrintf(title, 1023, "Solution for Field %d", field);CHKERRQ(ierr); 69340e14135SMatthew G. Knepley ierr = DMPrintCellVector(c, title, Nb*Ncomp, &x[fieldOffset]);CHKERRQ(ierr); 694652b88e8SMatthew G. Knepley } 69540e14135SMatthew G. Knepley for (q = 0; q < numQuadPoints; ++q) { 6967318780aSToby Isaac if (detJ[q] <= 0.0) SETERRQ3(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Invalid determinant %g for element %D, quadrature points %D", detJ[q], c, q); 6977318780aSToby Isaac ierr = (*funcs[field])(coordDim, time, &coords[q*coordDim], n, numFields, funcVal, ctx); 698e735a8a9SMatthew G. Knepley if (ierr) { 699e735a8a9SMatthew G. Knepley PetscErrorCode ierr2; 700e735a8a9SMatthew G. Knepley ierr2 = DMPlexVecRestoreClosure(dm, NULL, localX, c, NULL, &x);CHKERRQ(ierr2); 701e735a8a9SMatthew G. Knepley ierr2 = DMRestoreLocalVector(dm, &localX);CHKERRQ(ierr2); 7027318780aSToby Isaac ierr2 = PetscFree7(funcVal,coords,realSpaceDer,J,invJ,interpolantVec,detJ);CHKERRQ(ierr2); 703e735a8a9SMatthew G. Knepley CHKERRQ(ierr); 704e735a8a9SMatthew G. Knepley } 70540e14135SMatthew G. Knepley for (fc = 0; fc < Ncomp; ++fc) { 70640e14135SMatthew G. Knepley PetscScalar interpolant = 0.0; 70740e14135SMatthew G. Knepley 7087318780aSToby Isaac for (d = 0; d < coordDim; ++d) interpolantVec[d] = 0.0; 70940e14135SMatthew G. Knepley for (f = 0; f < Nb; ++f) { 71040e14135SMatthew G. Knepley const PetscInt fidx = f*Ncomp+fc; 71140e14135SMatthew G. Knepley 7127318780aSToby Isaac for (d = 0; d < coordDim; ++d) { 71340e14135SMatthew G. Knepley realSpaceDer[d] = 0.0; 71440e14135SMatthew G. Knepley for (g = 0; g < dim; ++g) { 7157318780aSToby Isaac realSpaceDer[d] += invJ[coordDim * coordDim * q + g*coordDim+d]*basisDer[(q*Nb*Ncomp+fidx)*dim+g]; 71640e14135SMatthew G. Knepley } 71740e14135SMatthew G. Knepley interpolantVec[d] += x[fieldOffset+fidx]*realSpaceDer[d]; 71840e14135SMatthew G. Knepley } 71940e14135SMatthew G. Knepley } 7207318780aSToby Isaac for (d = 0; d < coordDim; ++d) interpolant += interpolantVec[d]*n[d]; 7217318780aSToby Isaac if (debug) {ierr = PetscPrintf(PETSC_COMM_SELF, " elem %d fieldDer %d diff %g\n", c, field, PetscSqr(PetscRealPart(interpolant - funcVal[fc]))*quadWeights[q]*detJ[q]);CHKERRQ(ierr);} 7227318780aSToby Isaac elemDiff += PetscSqr(PetscRealPart(interpolant - funcVal[fc]))*quadWeights[q]*detJ[q]; 72340e14135SMatthew G. Knepley } 72440e14135SMatthew G. Knepley } 72540e14135SMatthew G. Knepley comp += Ncomp; 72640e14135SMatthew G. Knepley fieldOffset += Nb*Ncomp; 72740e14135SMatthew G. Knepley } 72840e14135SMatthew G. Knepley ierr = DMPlexVecRestoreClosure(dm, NULL, localX, c, NULL, &x);CHKERRQ(ierr); 72940e14135SMatthew G. Knepley if (debug) {ierr = PetscPrintf(PETSC_COMM_SELF, " elem %d diff %g\n", c, elemDiff);CHKERRQ(ierr);} 73040e14135SMatthew G. Knepley localDiff += elemDiff; 73140e14135SMatthew G. Knepley } 7327318780aSToby Isaac ierr = PetscFree7(funcVal,coords,realSpaceDer,J,invJ,interpolantVec,detJ);CHKERRQ(ierr); 73340e14135SMatthew G. Knepley ierr = DMRestoreLocalVector(dm, &localX);CHKERRQ(ierr); 734b2566f29SBarry Smith ierr = MPIU_Allreduce(&localDiff, diff, 1, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)dm));CHKERRQ(ierr); 73540e14135SMatthew G. Knepley *diff = PetscSqrtReal(*diff); 736cb1e1211SMatthew G Knepley PetscFunctionReturn(0); 737cb1e1211SMatthew G Knepley } 738cb1e1211SMatthew G Knepley 739c6eecec3SToby Isaac PetscErrorCode DMComputeL2FieldDiff_Plex(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal [], PetscInt, PetscScalar *, void *), void **ctxs, Vec X, PetscReal *diff) 74073d901b8SMatthew G. Knepley { 74173d901b8SMatthew G. Knepley const PetscInt debug = 0; 74273d901b8SMatthew G. Knepley PetscSection section; 74373d901b8SMatthew G. Knepley PetscQuadrature quad; 74473d901b8SMatthew G. Knepley Vec localX; 74515496722SMatthew G. Knepley PetscScalar *funcVal, *interpolant; 7467318780aSToby Isaac PetscReal *coords, *detJ, *J; 74773d901b8SMatthew G. Knepley PetscReal *localDiff; 74815496722SMatthew G. Knepley const PetscReal *quadPoints, *quadWeights; 7497318780aSToby Isaac PetscInt dim, coordDim, numFields, numComponents = 0, Nq, cStart, cEnd, cEndInterior, c, field, fieldOffset; 75073d901b8SMatthew G. Knepley PetscErrorCode ierr; 75173d901b8SMatthew G. Knepley 75273d901b8SMatthew G. Knepley PetscFunctionBegin; 753c73cfb54SMatthew G. Knepley ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr); 7547318780aSToby Isaac ierr = DMGetCoordinateDim(dm, &coordDim);CHKERRQ(ierr); 75573d901b8SMatthew G. Knepley ierr = DMGetDefaultSection(dm, §ion);CHKERRQ(ierr); 75673d901b8SMatthew G. Knepley ierr = PetscSectionGetNumFields(section, &numFields);CHKERRQ(ierr); 75773d901b8SMatthew G. Knepley ierr = DMGetLocalVector(dm, &localX);CHKERRQ(ierr); 758bdd6f66aSToby Isaac ierr = DMProjectFunctionLocal(dm, time, funcs, ctxs, INSERT_BC_VALUES, localX);CHKERRQ(ierr); 75973d901b8SMatthew G. Knepley ierr = DMGlobalToLocalBegin(dm, X, INSERT_VALUES, localX);CHKERRQ(ierr); 76073d901b8SMatthew G. Knepley ierr = DMGlobalToLocalEnd(dm, X, INSERT_VALUES, localX);CHKERRQ(ierr); 76173d901b8SMatthew G. Knepley for (field = 0; field < numFields; ++field) { 76215496722SMatthew G. Knepley PetscObject obj; 76315496722SMatthew G. Knepley PetscClassId id; 76473d901b8SMatthew G. Knepley PetscInt Nc; 76573d901b8SMatthew G. Knepley 76615496722SMatthew G. Knepley ierr = DMGetField(dm, field, &obj);CHKERRQ(ierr); 76715496722SMatthew G. Knepley ierr = PetscObjectGetClassId(obj, &id);CHKERRQ(ierr); 76815496722SMatthew G. Knepley if (id == PETSCFE_CLASSID) { 76915496722SMatthew G. Knepley PetscFE fe = (PetscFE) obj; 77015496722SMatthew G. Knepley 7710f2d7e86SMatthew G. Knepley ierr = PetscFEGetQuadrature(fe, &quad);CHKERRQ(ierr); 7720f2d7e86SMatthew G. Knepley ierr = PetscFEGetNumComponents(fe, &Nc);CHKERRQ(ierr); 77315496722SMatthew G. Knepley } else if (id == PETSCFV_CLASSID) { 77415496722SMatthew G. Knepley PetscFV fv = (PetscFV) obj; 77515496722SMatthew G. Knepley 77615496722SMatthew G. Knepley ierr = PetscFVGetQuadrature(fv, &quad);CHKERRQ(ierr); 77715496722SMatthew G. Knepley ierr = PetscFVGetNumComponents(fv, &Nc);CHKERRQ(ierr); 77815496722SMatthew G. Knepley } else SETERRQ1(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %d", field); 77973d901b8SMatthew G. Knepley numComponents += Nc; 78073d901b8SMatthew G. Knepley } 7817318780aSToby Isaac ierr = PetscQuadratureGetData(quad, NULL, &Nq, &quadPoints, &quadWeights);CHKERRQ(ierr); 7827318780aSToby Isaac ierr = PetscCalloc6(numFields,&localDiff,numComponents,&funcVal,numComponents,&interpolant,coordDim*Nq,&coords,Nq,&detJ,coordDim*coordDim*Nq,&J);CHKERRQ(ierr); 78373d901b8SMatthew G. Knepley ierr = DMPlexGetHeightStratum(dm, 0, &cStart, &cEnd);CHKERRQ(ierr); 7849ac3fadcSMatthew G. Knepley ierr = DMPlexGetHybridBounds(dm, &cEndInterior, NULL, NULL, NULL);CHKERRQ(ierr); 7859ac3fadcSMatthew G. Knepley cEnd = cEndInterior < 0 ? cEnd : cEndInterior; 78673d901b8SMatthew G. Knepley for (c = cStart; c < cEnd; ++c) { 78773d901b8SMatthew G. Knepley PetscScalar *x = NULL; 78873d901b8SMatthew G. Knepley 7897318780aSToby Isaac ierr = DMPlexComputeCellGeometryFEM(dm, c, quad, coords, J, NULL, detJ);CHKERRQ(ierr); 79073d901b8SMatthew G. Knepley ierr = DMPlexVecGetClosure(dm, NULL, localX, c, NULL, &x);CHKERRQ(ierr); 79173d901b8SMatthew G. Knepley 79215496722SMatthew G. Knepley for (field = 0, fieldOffset = 0; field < numFields; ++field) { 79315496722SMatthew G. Knepley PetscObject obj; 79415496722SMatthew G. Knepley PetscClassId id; 79573d901b8SMatthew G. Knepley void * const ctx = ctxs ? ctxs[field] : NULL; 79615496722SMatthew G. Knepley PetscInt Nb, Nc, q, fc; 79773d901b8SMatthew G. Knepley 79815496722SMatthew G. Knepley PetscReal elemDiff = 0.0; 79915496722SMatthew G. Knepley 80015496722SMatthew G. Knepley ierr = DMGetField(dm, field, &obj);CHKERRQ(ierr); 80115496722SMatthew G. Knepley ierr = PetscObjectGetClassId(obj, &id);CHKERRQ(ierr); 80215496722SMatthew G. Knepley if (id == PETSCFE_CLASSID) {ierr = PetscFEGetNumComponents((PetscFE) obj, &Nc);CHKERRQ(ierr);ierr = PetscFEGetDimension((PetscFE) obj, &Nb);CHKERRQ(ierr);} 80315496722SMatthew G. Knepley else if (id == PETSCFV_CLASSID) {ierr = PetscFVGetNumComponents((PetscFV) obj, &Nc);CHKERRQ(ierr);Nb = 1;} 80415496722SMatthew G. Knepley else SETERRQ1(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %d", field); 80573d901b8SMatthew G. Knepley if (debug) { 80673d901b8SMatthew G. Knepley char title[1024]; 80773d901b8SMatthew G. Knepley ierr = PetscSNPrintf(title, 1023, "Solution for Field %d", field);CHKERRQ(ierr); 80815496722SMatthew G. Knepley ierr = DMPrintCellVector(c, title, Nb*Nc, &x[fieldOffset]);CHKERRQ(ierr); 80973d901b8SMatthew G. Knepley } 8107318780aSToby Isaac for (q = 0; q < Nq; ++q) { 8117318780aSToby Isaac if (detJ[q] <= 0.0) SETERRQ3(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Invalid determinant %g for element %D, quadrature point %D", detJ, c, q); 8127318780aSToby Isaac ierr = (*funcs[field])(coordDim, time, &coords[coordDim*q], numFields, funcVal, ctx); 813e735a8a9SMatthew G. Knepley if (ierr) { 814e735a8a9SMatthew G. Knepley PetscErrorCode ierr2; 815e735a8a9SMatthew G. Knepley ierr2 = DMPlexVecRestoreClosure(dm, NULL, localX, c, NULL, &x);CHKERRQ(ierr2); 816e735a8a9SMatthew G. Knepley ierr2 = DMRestoreLocalVector(dm, &localX);CHKERRQ(ierr2); 8177318780aSToby Isaac ierr2 = PetscFree6(localDiff,funcVal,interpolant,coords,detJ,J);CHKERRQ(ierr2); 818e735a8a9SMatthew G. Knepley CHKERRQ(ierr); 819e735a8a9SMatthew G. Knepley } 82015496722SMatthew G. Knepley if (id == PETSCFE_CLASSID) {ierr = PetscFEInterpolate_Static((PetscFE) obj, &x[fieldOffset], q, interpolant);CHKERRQ(ierr);} 82115496722SMatthew G. Knepley else if (id == PETSCFV_CLASSID) {ierr = PetscFVInterpolate_Static((PetscFV) obj, &x[fieldOffset], q, interpolant);CHKERRQ(ierr);} 82215496722SMatthew G. Knepley else SETERRQ1(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %d", field); 82315496722SMatthew G. Knepley for (fc = 0; fc < Nc; ++fc) { 8247318780aSToby Isaac if (debug) {ierr = PetscPrintf(PETSC_COMM_SELF, " elem %d field %d point %g %g %g diff %g\n", c, field, coordDim > 0 ? coords[0] : 0., coordDim > 1 ? coords[1] : 0., coordDim > 2 ? coords[2] : 0., PetscSqr(PetscRealPart(interpolant[fc] - funcVal[fc]))*quadWeights[q]*detJ[q]);CHKERRQ(ierr);} 8257318780aSToby Isaac elemDiff += PetscSqr(PetscRealPart(interpolant[fc] - funcVal[fc]))*quadWeights[q]*detJ[q]; 82673d901b8SMatthew G. Knepley } 82773d901b8SMatthew G. Knepley } 82815496722SMatthew G. Knepley fieldOffset += Nb*Nc; 82973d901b8SMatthew G. Knepley localDiff[field] += elemDiff; 83073d901b8SMatthew G. Knepley } 83173d901b8SMatthew G. Knepley ierr = DMPlexVecRestoreClosure(dm, NULL, localX, c, NULL, &x);CHKERRQ(ierr); 83273d901b8SMatthew G. Knepley } 83373d901b8SMatthew G. Knepley ierr = DMRestoreLocalVector(dm, &localX);CHKERRQ(ierr); 834b2566f29SBarry Smith ierr = MPIU_Allreduce(localDiff, diff, numFields, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)dm));CHKERRQ(ierr); 83573d901b8SMatthew G. Knepley for (field = 0; field < numFields; ++field) diff[field] = PetscSqrtReal(diff[field]); 8367318780aSToby Isaac ierr = PetscFree6(localDiff,funcVal,interpolant,coords,detJ,J);CHKERRQ(ierr); 83773d901b8SMatthew G. Knepley PetscFunctionReturn(0); 83873d901b8SMatthew G. Knepley } 83973d901b8SMatthew G. Knepley 840e729f68cSMatthew G. Knepley /*@C 841e729f68cSMatthew G. Knepley DMPlexComputeL2DiffVec - This function computes the cellwise L_2 difference between a function u and an FEM interpolant solution u_h, and stores it in a Vec. 842e729f68cSMatthew G. Knepley 843e729f68cSMatthew G. Knepley Input Parameters: 844e729f68cSMatthew G. Knepley + dm - The DM 8450163fd50SMatthew G. Knepley . time - The time 846ca3eba1bSToby Isaac . funcs - The functions to evaluate for each field component: NULL means that component does not contribute to error calculation 847e729f68cSMatthew G. Knepley . ctxs - Optional array of contexts to pass to each function, or NULL. 848e729f68cSMatthew G. Knepley - X - The coefficient vector u_h 849e729f68cSMatthew G. Knepley 850e729f68cSMatthew G. Knepley Output Parameter: 851e729f68cSMatthew G. Knepley . D - A Vec which holds the difference ||u - u_h||_2 for each cell 852e729f68cSMatthew G. Knepley 853e729f68cSMatthew G. Knepley Level: developer 854e729f68cSMatthew G. Knepley 855b698f381SToby Isaac .seealso: DMProjectFunction(), DMComputeL2Diff(), DMPlexComputeL2FieldDiff(), DMComputeL2GradientDiff() 856e729f68cSMatthew G. Knepley @*/ 8570163fd50SMatthew G. Knepley PetscErrorCode DMPlexComputeL2DiffVec(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal [], PetscInt, PetscScalar *, void *), void **ctxs, Vec X, Vec D) 858e729f68cSMatthew G. Knepley { 859e729f68cSMatthew G. Knepley PetscSection section; 860e729f68cSMatthew G. Knepley PetscQuadrature quad; 861e729f68cSMatthew G. Knepley Vec localX; 862e729f68cSMatthew G. Knepley PetscScalar *funcVal, *interpolant; 8637318780aSToby Isaac PetscReal *coords, *detJ, *J; 864e729f68cSMatthew G. Knepley const PetscReal *quadPoints, *quadWeights; 8657318780aSToby Isaac PetscInt dim, coordDim, numFields, numComponents = 0, Nq, cStart, cEnd, cEndInterior, c, field, fieldOffset; 866e729f68cSMatthew G. Knepley PetscErrorCode ierr; 867e729f68cSMatthew G. Knepley 868e729f68cSMatthew G. Knepley PetscFunctionBegin; 869e729f68cSMatthew G. Knepley ierr = VecSet(D, 0.0);CHKERRQ(ierr); 870e729f68cSMatthew G. Knepley ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr); 8717318780aSToby Isaac ierr = DMGetCoordinateDim(dm, &coordDim);CHKERRQ(ierr); 872e729f68cSMatthew G. Knepley ierr = DMGetDefaultSection(dm, §ion);CHKERRQ(ierr); 873e729f68cSMatthew G. Knepley ierr = PetscSectionGetNumFields(section, &numFields);CHKERRQ(ierr); 874e729f68cSMatthew G. Knepley ierr = DMGetLocalVector(dm, &localX);CHKERRQ(ierr); 875bdd6f66aSToby Isaac ierr = DMProjectFunctionLocal(dm, time, funcs, ctxs, INSERT_BC_VALUES, localX);CHKERRQ(ierr); 876e729f68cSMatthew G. Knepley ierr = DMGlobalToLocalBegin(dm, X, INSERT_VALUES, localX);CHKERRQ(ierr); 877e729f68cSMatthew G. Knepley ierr = DMGlobalToLocalEnd(dm, X, INSERT_VALUES, localX);CHKERRQ(ierr); 878e729f68cSMatthew G. Knepley for (field = 0; field < numFields; ++field) { 879e729f68cSMatthew G. Knepley PetscObject obj; 880e729f68cSMatthew G. Knepley PetscClassId id; 881e729f68cSMatthew G. Knepley PetscInt Nc; 882e729f68cSMatthew G. Knepley 883e729f68cSMatthew G. Knepley ierr = DMGetField(dm, field, &obj);CHKERRQ(ierr); 884e729f68cSMatthew G. Knepley ierr = PetscObjectGetClassId(obj, &id);CHKERRQ(ierr); 885e729f68cSMatthew G. Knepley if (id == PETSCFE_CLASSID) { 886e729f68cSMatthew G. Knepley PetscFE fe = (PetscFE) obj; 887e729f68cSMatthew G. Knepley 888e729f68cSMatthew G. Knepley ierr = PetscFEGetQuadrature(fe, &quad);CHKERRQ(ierr); 889e729f68cSMatthew G. Knepley ierr = PetscFEGetNumComponents(fe, &Nc);CHKERRQ(ierr); 890e729f68cSMatthew G. Knepley } else if (id == PETSCFV_CLASSID) { 891e729f68cSMatthew G. Knepley PetscFV fv = (PetscFV) obj; 892e729f68cSMatthew G. Knepley 893e729f68cSMatthew G. Knepley ierr = PetscFVGetQuadrature(fv, &quad);CHKERRQ(ierr); 894e729f68cSMatthew G. Knepley ierr = PetscFVGetNumComponents(fv, &Nc);CHKERRQ(ierr); 895e729f68cSMatthew G. Knepley } else SETERRQ1(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %d", field); 896e729f68cSMatthew G. Knepley numComponents += Nc; 897e729f68cSMatthew G. Knepley } 8987318780aSToby Isaac ierr = PetscQuadratureGetData(quad, NULL, &Nq, &quadPoints, &quadWeights);CHKERRQ(ierr); 8997318780aSToby Isaac ierr = PetscMalloc5(numComponents,&funcVal,numComponents,&interpolant,coordDim*Nq,&coords,Nq,&detJ,coordDim*coordDim*Nq,&J);CHKERRQ(ierr); 900e729f68cSMatthew G. Knepley ierr = DMPlexGetHeightStratum(dm, 0, &cStart, &cEnd);CHKERRQ(ierr); 901e729f68cSMatthew G. Knepley ierr = DMPlexGetHybridBounds(dm, &cEndInterior, NULL, NULL, NULL);CHKERRQ(ierr); 902e729f68cSMatthew G. Knepley cEnd = cEndInterior < 0 ? cEnd : cEndInterior; 903e729f68cSMatthew G. Knepley for (c = cStart; c < cEnd; ++c) { 904e729f68cSMatthew G. Knepley PetscScalar *x = NULL; 9056f288a59SMatthew G. Knepley PetscScalar elemDiff = 0.0; 906e729f68cSMatthew G. Knepley 9077318780aSToby Isaac ierr = DMPlexComputeCellGeometryFEM(dm, c, quad, coords, J, NULL, detJ);CHKERRQ(ierr); 908e729f68cSMatthew G. Knepley ierr = DMPlexVecGetClosure(dm, NULL, localX, c, NULL, &x);CHKERRQ(ierr); 909e729f68cSMatthew G. Knepley 910e729f68cSMatthew G. Knepley for (field = 0, fieldOffset = 0; field < numFields; ++field) { 911e729f68cSMatthew G. Knepley PetscObject obj; 912e729f68cSMatthew G. Knepley PetscClassId id; 913e729f68cSMatthew G. Knepley void * const ctx = ctxs ? ctxs[field] : NULL; 914e729f68cSMatthew G. Knepley PetscInt Nb, Nc, q, fc; 915e729f68cSMatthew G. Knepley 916e729f68cSMatthew G. Knepley ierr = DMGetField(dm, field, &obj);CHKERRQ(ierr); 917e729f68cSMatthew G. Knepley ierr = PetscObjectGetClassId(obj, &id);CHKERRQ(ierr); 918e729f68cSMatthew G. Knepley if (id == PETSCFE_CLASSID) {ierr = PetscFEGetNumComponents((PetscFE) obj, &Nc);CHKERRQ(ierr);ierr = PetscFEGetDimension((PetscFE) obj, &Nb);CHKERRQ(ierr);} 919e729f68cSMatthew G. Knepley else if (id == PETSCFV_CLASSID) {ierr = PetscFVGetNumComponents((PetscFV) obj, &Nc);CHKERRQ(ierr);Nb = 1;} 920e729f68cSMatthew G. Knepley else SETERRQ1(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %d", field); 92123f34ed2SToby Isaac if (funcs[field]) { 9227318780aSToby Isaac for (q = 0; q < Nq; ++q) { 9237318780aSToby Isaac if (detJ[q] <= 0.0) SETERRQ3(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Invalid determinant %g for element %D, quadrature points %D", detJ[q], c, q); 9247318780aSToby Isaac ierr = (*funcs[field])(dim, time, &coords[q*coordDim], Nc, funcVal, ctx); 925e735a8a9SMatthew G. Knepley if (ierr) { 926e735a8a9SMatthew G. Knepley PetscErrorCode ierr2; 927e735a8a9SMatthew G. Knepley ierr2 = DMPlexVecRestoreClosure(dm, NULL, localX, c, NULL, &x);CHKERRQ(ierr2); 9287318780aSToby Isaac ierr2 = PetscFree5(funcVal,interpolant,coords,detJ,J);CHKERRQ(ierr); 929e735a8a9SMatthew G. Knepley ierr2 = DMRestoreLocalVector(dm, &localX);CHKERRQ(ierr2); 930e735a8a9SMatthew G. Knepley CHKERRQ(ierr); 931e735a8a9SMatthew G. Knepley } 932e729f68cSMatthew G. Knepley if (id == PETSCFE_CLASSID) {ierr = PetscFEInterpolate_Static((PetscFE) obj, &x[fieldOffset], q, interpolant);CHKERRQ(ierr);} 933e729f68cSMatthew G. Knepley else if (id == PETSCFV_CLASSID) {ierr = PetscFVInterpolate_Static((PetscFV) obj, &x[fieldOffset], q, interpolant);CHKERRQ(ierr);} 934e729f68cSMatthew G. Knepley else SETERRQ1(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %d", field); 935e729f68cSMatthew G. Knepley for (fc = 0; fc < Nc; ++fc) { 9367318780aSToby Isaac elemDiff += PetscSqr(PetscRealPart(interpolant[fc] - funcVal[fc]))*quadWeights[q]*detJ[q]; 937e729f68cSMatthew G. Knepley } 938e729f68cSMatthew G. Knepley } 93923f34ed2SToby Isaac } 940e729f68cSMatthew G. Knepley fieldOffset += Nb*Nc; 941e729f68cSMatthew G. Knepley } 942e729f68cSMatthew G. Knepley ierr = DMPlexVecRestoreClosure(dm, NULL, localX, c, NULL, &x);CHKERRQ(ierr); 94323f34ed2SToby Isaac ierr = VecSetValue(D, c - cStart, elemDiff, INSERT_VALUES);CHKERRQ(ierr); 944e729f68cSMatthew G. Knepley } 9457318780aSToby Isaac ierr = PetscFree5(funcVal,interpolant,coords,detJ,J);CHKERRQ(ierr); 946e729f68cSMatthew G. Knepley ierr = DMRestoreLocalVector(dm, &localX);CHKERRQ(ierr); 947e729f68cSMatthew G. Knepley ierr = VecSqrtAbs(D);CHKERRQ(ierr); 948e729f68cSMatthew G. Knepley PetscFunctionReturn(0); 949e729f68cSMatthew G. Knepley } 950e729f68cSMatthew G. Knepley 95173d901b8SMatthew G. Knepley /*@ 95273d901b8SMatthew G. Knepley DMPlexComputeIntegralFEM - Form the local integral F from the local input X using pointwise functions specified by the user 95373d901b8SMatthew G. Knepley 95473d901b8SMatthew G. Knepley Input Parameters: 95573d901b8SMatthew G. Knepley + dm - The mesh 95673d901b8SMatthew G. Knepley . X - Local input vector 95773d901b8SMatthew G. Knepley - user - The user context 95873d901b8SMatthew G. Knepley 95973d901b8SMatthew G. Knepley Output Parameter: 96073d901b8SMatthew G. Knepley . integral - Local integral for each field 96173d901b8SMatthew G. Knepley 96273d901b8SMatthew G. Knepley Level: developer 96373d901b8SMatthew G. Knepley 96473d901b8SMatthew G. Knepley .seealso: DMPlexComputeResidualFEM() 96573d901b8SMatthew G. Knepley @*/ 9660f2d7e86SMatthew G. Knepley PetscErrorCode DMPlexComputeIntegralFEM(DM dm, Vec X, PetscReal *integral, void *user) 96773d901b8SMatthew G. Knepley { 96873d901b8SMatthew G. Knepley DM_Plex *mesh = (DM_Plex *) dm->data; 969b5a3613cSMatthew G. Knepley DM dmAux, dmGrad; 970425f1808SMatthew G. Knepley Vec localX, A, cellGeometryFVM = NULL, faceGeometryFVM = NULL, locGrad = NULL; 9712764a2aaSMatthew G. Knepley PetscDS prob, probAux = NULL; 97273d901b8SMatthew G. Knepley PetscSection section, sectionAux; 973b5a3613cSMatthew G. Knepley PetscFV fvm = NULL; 974b5a3613cSMatthew G. Knepley PetscFECellGeom *cgeomFEM; 975b5a3613cSMatthew G. Knepley PetscFVFaceGeom *fgeomFVM; 976b5a3613cSMatthew G. Knepley PetscFVCellGeom *cgeomFVM; 97773d901b8SMatthew G. Knepley PetscScalar *u, *a = NULL; 978b5a3613cSMatthew G. Knepley const PetscScalar *lgrad; 979b5a3613cSMatthew G. Knepley PetscReal *lintegral; 980b5a3613cSMatthew G. Knepley PetscInt *uOff, *uOff_x, *aOff = NULL; 981b5a3613cSMatthew G. Knepley PetscInt dim, Nf, NfAux = 0, f, numCells, cStart, cEnd, cEndInterior, c; 9820f2d7e86SMatthew G. Knepley PetscInt totDim, totDimAux; 983425f1808SMatthew G. Knepley PetscBool useFVM = PETSC_FALSE; 98473d901b8SMatthew G. Knepley PetscErrorCode ierr; 98573d901b8SMatthew G. Knepley 98673d901b8SMatthew G. Knepley PetscFunctionBegin; 987c1f031eeSMatthew G. Knepley ierr = PetscLogEventBegin(DMPLEX_IntegralFEM,dm,0,0,0);CHKERRQ(ierr); 98873d901b8SMatthew G. Knepley ierr = DMGetLocalVector(dm, &localX);CHKERRQ(ierr); 989bdd6f66aSToby Isaac ierr = DMPlexInsertBoundaryValues(dm, PETSC_TRUE, localX, 0.0, NULL, NULL, NULL);CHKERRQ(ierr); 99073d901b8SMatthew G. Knepley ierr = DMGlobalToLocalBegin(dm, X, INSERT_VALUES, localX);CHKERRQ(ierr); 99173d901b8SMatthew G. Knepley ierr = DMGlobalToLocalEnd(dm, X, INSERT_VALUES, localX);CHKERRQ(ierr); 992c73cfb54SMatthew G. Knepley ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr); 99373d901b8SMatthew G. Knepley ierr = DMGetDefaultSection(dm, §ion);CHKERRQ(ierr); 9942764a2aaSMatthew G. Knepley ierr = DMGetDS(dm, &prob);CHKERRQ(ierr); 9952764a2aaSMatthew G. Knepley ierr = PetscDSGetTotalDimension(prob, &totDim);CHKERRQ(ierr); 996b5a3613cSMatthew G. Knepley ierr = PetscDSGetComponentOffsets(prob, &uOff);CHKERRQ(ierr); 997b5a3613cSMatthew G. Knepley ierr = PetscDSGetComponentDerivativeOffsets(prob, &uOff_x);CHKERRQ(ierr); 99873d901b8SMatthew G. Knepley ierr = PetscSectionGetNumFields(section, &Nf);CHKERRQ(ierr); 99973d901b8SMatthew G. Knepley ierr = DMPlexGetHeightStratum(dm, 0, &cStart, &cEnd);CHKERRQ(ierr); 10009ac3fadcSMatthew G. Knepley ierr = DMPlexGetHybridBounds(dm, &cEndInterior, NULL, NULL, NULL);CHKERRQ(ierr); 10019ac3fadcSMatthew G. Knepley cEnd = cEndInterior < 0 ? cEnd : cEndInterior; 100273d901b8SMatthew G. Knepley numCells = cEnd - cStart; 100373d901b8SMatthew G. Knepley ierr = PetscObjectQuery((PetscObject) dm, "dmAux", (PetscObject *) &dmAux);CHKERRQ(ierr); 100473d901b8SMatthew G. Knepley ierr = PetscObjectQuery((PetscObject) dm, "A", (PetscObject *) &A);CHKERRQ(ierr); 100573d901b8SMatthew G. Knepley if (dmAux) { 10062764a2aaSMatthew G. Knepley ierr = DMGetDS(dmAux, &probAux);CHKERRQ(ierr); 1007b5a3613cSMatthew G. Knepley ierr = PetscDSGetNumFields(probAux, &NfAux);CHKERRQ(ierr); 1008b5a3613cSMatthew G. Knepley ierr = DMGetDefaultSection(dmAux, §ionAux);CHKERRQ(ierr); 10092764a2aaSMatthew G. Knepley ierr = PetscDSGetTotalDimension(probAux, &totDimAux);CHKERRQ(ierr); 1010b5a3613cSMatthew G. Knepley ierr = PetscDSGetComponentOffsets(probAux, &aOff);CHKERRQ(ierr); 1011b5a3613cSMatthew G. Knepley ierr = PetscDSGetEvaluationArrays(probAux, &a, NULL, NULL);CHKERRQ(ierr); 101273d901b8SMatthew G. Knepley } 1013b5a3613cSMatthew G. Knepley for (f = 0; f < Nf; ++f) { 1014b5a3613cSMatthew G. Knepley PetscObject obj; 1015b5a3613cSMatthew G. Knepley PetscClassId id; 1016b5a3613cSMatthew G. Knepley 1017b5a3613cSMatthew G. Knepley ierr = PetscDSGetDiscretization(prob, f, &obj);CHKERRQ(ierr); 1018b5a3613cSMatthew G. Knepley ierr = PetscObjectGetClassId(obj, &id);CHKERRQ(ierr); 1019b5a3613cSMatthew G. Knepley if (id == PETSCFV_CLASSID) {useFVM = PETSC_TRUE; fvm = (PetscFV) obj;} 1020b5a3613cSMatthew G. Knepley } 1021b5a3613cSMatthew G. Knepley if (useFVM) { 1022b5a3613cSMatthew G. Knepley Vec grad; 1023b5a3613cSMatthew G. Knepley PetscInt fStart, fEnd; 1024b5a3613cSMatthew G. Knepley PetscBool compGrad; 1025b5a3613cSMatthew G. Knepley 1026b5a3613cSMatthew G. Knepley ierr = PetscFVGetComputeGradients(fvm, &compGrad);CHKERRQ(ierr); 1027b5a3613cSMatthew G. Knepley ierr = PetscFVSetComputeGradients(fvm, PETSC_TRUE);CHKERRQ(ierr); 1028b5a3613cSMatthew G. Knepley ierr = DMPlexComputeGeometryFVM(dm, &cellGeometryFVM, &faceGeometryFVM);CHKERRQ(ierr); 1029b5a3613cSMatthew G. Knepley ierr = DMPlexComputeGradientFVM(dm, fvm, faceGeometryFVM, cellGeometryFVM, &dmGrad);CHKERRQ(ierr); 1030b5a3613cSMatthew G. Knepley ierr = PetscFVSetComputeGradients(fvm, compGrad);CHKERRQ(ierr); 1031b5a3613cSMatthew G. Knepley ierr = VecGetArrayRead(faceGeometryFVM, (const PetscScalar **) &fgeomFVM);CHKERRQ(ierr); 1032b5a3613cSMatthew G. Knepley ierr = VecGetArrayRead(cellGeometryFVM, (const PetscScalar **) &cgeomFVM);CHKERRQ(ierr); 1033b5a3613cSMatthew G. Knepley /* Reconstruct and limit cell gradients */ 1034b5a3613cSMatthew G. Knepley ierr = DMPlexGetHeightStratum(dm, 1, &fStart, &fEnd);CHKERRQ(ierr); 1035b5a3613cSMatthew G. Knepley ierr = DMGetGlobalVector(dmGrad, &grad);CHKERRQ(ierr); 1036b5a3613cSMatthew G. Knepley ierr = DMPlexReconstructGradients_Internal(dm, fvm, fStart, fEnd, faceGeometryFVM, cellGeometryFVM, localX, grad);CHKERRQ(ierr); 1037b5a3613cSMatthew G. Knepley /* Communicate gradient values */ 1038b5a3613cSMatthew G. Knepley ierr = DMGetLocalVector(dmGrad, &locGrad);CHKERRQ(ierr); 1039b5a3613cSMatthew G. Knepley ierr = DMGlobalToLocalBegin(dmGrad, grad, INSERT_VALUES, locGrad);CHKERRQ(ierr); 1040b5a3613cSMatthew G. Knepley ierr = DMGlobalToLocalEnd(dmGrad, grad, INSERT_VALUES, locGrad);CHKERRQ(ierr); 1041b5a3613cSMatthew G. Knepley ierr = DMRestoreGlobalVector(dmGrad, &grad);CHKERRQ(ierr); 1042b5a3613cSMatthew G. Knepley /* Handle non-essential (e.g. outflow) boundary values */ 1043b5a3613cSMatthew G. Knepley ierr = DMPlexInsertBoundaryValues(dm, PETSC_FALSE, localX, 0.0, faceGeometryFVM, cellGeometryFVM, locGrad);CHKERRQ(ierr); 1044b5a3613cSMatthew G. Knepley ierr = VecGetArrayRead(locGrad, &lgrad);CHKERRQ(ierr); 1045b5a3613cSMatthew G. Knepley } 1046b5a3613cSMatthew G. Knepley ierr = PetscMalloc3(Nf,&lintegral,numCells*totDim,&u,numCells,&cgeomFEM);CHKERRQ(ierr); 10470f2d7e86SMatthew G. Knepley if (dmAux) {ierr = PetscMalloc1(numCells*totDimAux, &a);CHKERRQ(ierr);} 1048c1f031eeSMatthew G. Knepley for (f = 0; f < Nf; ++f) {lintegral[f] = 0.0;} 104973d901b8SMatthew G. Knepley for (c = cStart; c < cEnd; ++c) { 105073d901b8SMatthew G. Knepley PetscScalar *x = NULL; 105173d901b8SMatthew G. Knepley PetscInt i; 105273d901b8SMatthew G. Knepley 1053b5a3613cSMatthew G. Knepley ierr = DMPlexComputeCellGeometryFEM(dm, c, NULL, cgeomFEM[c].v0, cgeomFEM[c].J, cgeomFEM[c].invJ, &cgeomFEM[c].detJ);CHKERRQ(ierr); 1054b5a3613cSMatthew G. Knepley if (cgeomFEM[c].detJ <= 0.0) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Invalid determinant %g for element %d", cgeomFEM[c].detJ, c); 105573d901b8SMatthew G. Knepley ierr = DMPlexVecGetClosure(dm, section, localX, c, NULL, &x);CHKERRQ(ierr); 10560f2d7e86SMatthew G. Knepley for (i = 0; i < totDim; ++i) u[c*totDim+i] = x[i]; 105773d901b8SMatthew G. Knepley ierr = DMPlexVecRestoreClosure(dm, section, localX, c, NULL, &x);CHKERRQ(ierr); 105873d901b8SMatthew G. Knepley if (dmAux) { 105973d901b8SMatthew G. Knepley ierr = DMPlexVecGetClosure(dmAux, sectionAux, A, c, NULL, &x);CHKERRQ(ierr); 10600f2d7e86SMatthew G. Knepley for (i = 0; i < totDimAux; ++i) a[c*totDimAux+i] = x[i]; 106173d901b8SMatthew G. Knepley ierr = DMPlexVecRestoreClosure(dmAux, sectionAux, A, c, NULL, &x);CHKERRQ(ierr); 106273d901b8SMatthew G. Knepley } 106373d901b8SMatthew G. Knepley } 106473d901b8SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 1065c1f031eeSMatthew G. Knepley PetscObject obj; 1066c1f031eeSMatthew G. Knepley PetscClassId id; 1067c1f031eeSMatthew G. Knepley PetscInt numChunks, numBatches, batchSize, numBlocks, blockSize, Ne, Nr, offset; 106873d901b8SMatthew G. Knepley 1069c1f031eeSMatthew G. Knepley ierr = PetscDSGetDiscretization(prob, f, &obj);CHKERRQ(ierr); 1070c1f031eeSMatthew G. Knepley ierr = PetscObjectGetClassId(obj, &id);CHKERRQ(ierr); 1071c1f031eeSMatthew G. Knepley if (id == PETSCFE_CLASSID) { 1072c1f031eeSMatthew G. Knepley PetscFE fe = (PetscFE) obj; 1073c1f031eeSMatthew G. Knepley PetscQuadrature q; 1074c1f031eeSMatthew G. Knepley PetscInt Nq, Nb; 1075c1f031eeSMatthew G. Knepley 10760f2d7e86SMatthew G. Knepley ierr = PetscFEGetTileSizes(fe, NULL, &numBlocks, NULL, &numBatches);CHKERRQ(ierr); 1077c1f031eeSMatthew G. Knepley ierr = PetscFEGetQuadrature(fe, &q);CHKERRQ(ierr); 1078c1f031eeSMatthew G. Knepley ierr = PetscQuadratureGetData(q, NULL, &Nq, NULL, NULL);CHKERRQ(ierr); 1079c1f031eeSMatthew G. Knepley ierr = PetscFEGetDimension(fe, &Nb);CHKERRQ(ierr); 1080c1f031eeSMatthew G. Knepley blockSize = Nb*Nq; 108173d901b8SMatthew G. Knepley batchSize = numBlocks * blockSize; 10820f2d7e86SMatthew G. Knepley ierr = PetscFESetTileSizes(fe, blockSize, numBlocks, batchSize, numBatches);CHKERRQ(ierr); 108373d901b8SMatthew G. Knepley numChunks = numCells / (numBatches*batchSize); 108473d901b8SMatthew G. Knepley Ne = numChunks*numBatches*batchSize; 108573d901b8SMatthew G. Knepley Nr = numCells % (numBatches*batchSize); 108673d901b8SMatthew G. Knepley offset = numCells - Nr; 1087b5a3613cSMatthew G. Knepley ierr = PetscFEIntegrate(fe, prob, f, Ne, cgeomFEM, u, probAux, a, lintegral);CHKERRQ(ierr); 1088b5a3613cSMatthew G. Knepley ierr = PetscFEIntegrate(fe, prob, f, Nr, &cgeomFEM[offset], &u[offset*totDim], probAux, &a[offset*totDimAux], lintegral);CHKERRQ(ierr); 1089c1f031eeSMatthew G. Knepley } else if (id == PETSCFV_CLASSID) { 1090b69edc29SMatthew G. Knepley /* PetscFV fv = (PetscFV) obj; */ 1091c1f031eeSMatthew G. Knepley PetscInt foff; 1092420e96edSMatthew G. Knepley PetscPointFunc obj_func; 1093b69edc29SMatthew G. Knepley PetscScalar lint; 1094c1f031eeSMatthew G. Knepley 1095c1f031eeSMatthew G. Knepley ierr = PetscDSGetObjective(prob, f, &obj_func);CHKERRQ(ierr); 1096c1f031eeSMatthew G. Knepley ierr = PetscDSGetFieldOffset(prob, f, &foff);CHKERRQ(ierr); 1097c1f031eeSMatthew G. Knepley if (obj_func) { 1098c1f031eeSMatthew G. Knepley for (c = 0; c < numCells; ++c) { 1099b5a3613cSMatthew G. Knepley PetscScalar *u_x; 1100b5a3613cSMatthew G. Knepley 1101b5a3613cSMatthew G. Knepley ierr = DMPlexPointLocalRead(dmGrad, c, lgrad, &u_x);CHKERRQ(ierr); 1102b5a3613cSMatthew G. Knepley obj_func(dim, Nf, NfAux, uOff, uOff_x, &u[totDim*c+foff], NULL, u_x, aOff, NULL, a, NULL, NULL, 0.0, cgeomFVM[c].centroid, &lint); 1103b5a3613cSMatthew G. Knepley lintegral[f] += PetscRealPart(lint)*cgeomFVM[c].volume; 110473d901b8SMatthew G. Knepley } 1105c1f031eeSMatthew G. Knepley } 1106c1f031eeSMatthew G. Knepley } else SETERRQ1(PetscObjectComm((PetscObject) dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %d", f); 1107c1f031eeSMatthew G. Knepley } 1108b5a3613cSMatthew G. Knepley if (useFVM) { 1109b5a3613cSMatthew G. Knepley ierr = VecRestoreArrayRead(locGrad, &lgrad);CHKERRQ(ierr); 1110b5a3613cSMatthew G. Knepley ierr = VecRestoreArrayRead(faceGeometryFVM, (const PetscScalar **) &fgeomFVM);CHKERRQ(ierr); 1111b5a3613cSMatthew G. Knepley ierr = VecRestoreArrayRead(cellGeometryFVM, (const PetscScalar **) &cgeomFVM);CHKERRQ(ierr); 1112b5a3613cSMatthew G. Knepley ierr = DMRestoreLocalVector(dmGrad, &locGrad);CHKERRQ(ierr); 1113b5a3613cSMatthew G. Knepley ierr = VecDestroy(&faceGeometryFVM);CHKERRQ(ierr); 1114b5a3613cSMatthew G. Knepley ierr = VecDestroy(&cellGeometryFVM);CHKERRQ(ierr); 1115b5a3613cSMatthew G. Knepley ierr = DMDestroy(&dmGrad);CHKERRQ(ierr); 1116b5a3613cSMatthew G. Knepley } 111773d901b8SMatthew G. Knepley if (dmAux) {ierr = PetscFree(a);CHKERRQ(ierr);} 111873d901b8SMatthew G. Knepley if (mesh->printFEM) { 111973d901b8SMatthew G. Knepley ierr = PetscPrintf(PetscObjectComm((PetscObject) dm), "Local integral:");CHKERRQ(ierr); 1120c1f031eeSMatthew G. Knepley for (f = 0; f < Nf; ++f) {ierr = PetscPrintf(PetscObjectComm((PetscObject) dm), " %g", lintegral[f]);CHKERRQ(ierr);} 112173d901b8SMatthew G. Knepley ierr = PetscPrintf(PetscObjectComm((PetscObject) dm), "\n");CHKERRQ(ierr); 112273d901b8SMatthew G. Knepley } 112373d901b8SMatthew G. Knepley ierr = DMRestoreLocalVector(dm, &localX);CHKERRQ(ierr); 1124b2566f29SBarry Smith ierr = MPIU_Allreduce(lintegral, integral, Nf, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject) dm));CHKERRQ(ierr); 1125b5a3613cSMatthew G. Knepley ierr = PetscFree3(lintegral,u,cgeomFEM);CHKERRQ(ierr); 1126c1f031eeSMatthew G. Knepley ierr = PetscLogEventEnd(DMPLEX_IntegralFEM,dm,0,0,0);CHKERRQ(ierr); 112773d901b8SMatthew G. Knepley PetscFunctionReturn(0); 112873d901b8SMatthew G. Knepley } 112973d901b8SMatthew G. Knepley 1130d69c5d34SMatthew G. Knepley /*@ 113168132eb9SMatthew G. Knepley DMPlexComputeInterpolatorNested - Form the local portion of the interpolation matrix I from the coarse DM to the uniformly refined DM. 1132d69c5d34SMatthew G. Knepley 1133d69c5d34SMatthew G. Knepley Input Parameters: 1134d69c5d34SMatthew G. Knepley + dmf - The fine mesh 1135d69c5d34SMatthew G. Knepley . dmc - The coarse mesh 1136d69c5d34SMatthew G. Knepley - user - The user context 1137d69c5d34SMatthew G. Knepley 1138d69c5d34SMatthew G. Knepley Output Parameter: 1139934789fcSMatthew G. Knepley . In - The interpolation matrix 1140d69c5d34SMatthew G. Knepley 1141d69c5d34SMatthew G. Knepley Level: developer 1142d69c5d34SMatthew G. Knepley 114368132eb9SMatthew G. Knepley .seealso: DMPlexComputeInterpolatorGeneral(), DMPlexComputeJacobianFEM() 1144d69c5d34SMatthew G. Knepley @*/ 114568132eb9SMatthew G. Knepley PetscErrorCode DMPlexComputeInterpolatorNested(DM dmc, DM dmf, Mat In, void *user) 1146d69c5d34SMatthew G. Knepley { 1147d69c5d34SMatthew G. Knepley DM_Plex *mesh = (DM_Plex *) dmc->data; 1148d69c5d34SMatthew G. Knepley const char *name = "Interpolator"; 11492764a2aaSMatthew G. Knepley PetscDS prob; 1150d69c5d34SMatthew G. Knepley PetscFE *feRef; 115197c42addSMatthew G. Knepley PetscFV *fvRef; 1152d69c5d34SMatthew G. Knepley PetscSection fsection, fglobalSection; 1153d69c5d34SMatthew G. Knepley PetscSection csection, cglobalSection; 1154d69c5d34SMatthew G. Knepley PetscScalar *elemMat; 11559ac3fadcSMatthew G. Knepley PetscInt dim, Nf, f, fieldI, fieldJ, offsetI, offsetJ, cStart, cEnd, cEndInterior, c; 11560f2d7e86SMatthew G. Knepley PetscInt cTotDim, rTotDim = 0; 1157d69c5d34SMatthew G. Knepley PetscErrorCode ierr; 1158d69c5d34SMatthew G. Knepley 1159d69c5d34SMatthew G. Knepley PetscFunctionBegin; 1160d69c5d34SMatthew G. Knepley ierr = PetscLogEventBegin(DMPLEX_InterpolatorFEM,dmc,dmf,0,0);CHKERRQ(ierr); 1161c73cfb54SMatthew G. Knepley ierr = DMGetDimension(dmf, &dim);CHKERRQ(ierr); 1162d69c5d34SMatthew G. Knepley ierr = DMGetDefaultSection(dmf, &fsection);CHKERRQ(ierr); 1163d69c5d34SMatthew G. Knepley ierr = DMGetDefaultGlobalSection(dmf, &fglobalSection);CHKERRQ(ierr); 1164d69c5d34SMatthew G. Knepley ierr = DMGetDefaultSection(dmc, &csection);CHKERRQ(ierr); 1165d69c5d34SMatthew G. Knepley ierr = DMGetDefaultGlobalSection(dmc, &cglobalSection);CHKERRQ(ierr); 1166d69c5d34SMatthew G. Knepley ierr = PetscSectionGetNumFields(fsection, &Nf);CHKERRQ(ierr); 1167d69c5d34SMatthew G. Knepley ierr = DMPlexGetHeightStratum(dmc, 0, &cStart, &cEnd);CHKERRQ(ierr); 11689ac3fadcSMatthew G. Knepley ierr = DMPlexGetHybridBounds(dmc, &cEndInterior, NULL, NULL, NULL);CHKERRQ(ierr); 11699ac3fadcSMatthew G. Knepley cEnd = cEndInterior < 0 ? cEnd : cEndInterior; 11702764a2aaSMatthew G. Knepley ierr = DMGetDS(dmf, &prob);CHKERRQ(ierr); 117197c42addSMatthew G. Knepley ierr = PetscCalloc2(Nf,&feRef,Nf,&fvRef);CHKERRQ(ierr); 1172d69c5d34SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 117397c42addSMatthew G. Knepley PetscObject obj; 117497c42addSMatthew G. Knepley PetscClassId id; 1175aa7890ccSMatthew G. Knepley PetscInt rNb = 0, Nc = 0; 1176d69c5d34SMatthew G. Knepley 117797c42addSMatthew G. Knepley ierr = PetscDSGetDiscretization(prob, f, &obj);CHKERRQ(ierr); 117897c42addSMatthew G. Knepley ierr = PetscObjectGetClassId(obj, &id);CHKERRQ(ierr); 117997c42addSMatthew G. Knepley if (id == PETSCFE_CLASSID) { 118097c42addSMatthew G. Knepley PetscFE fe = (PetscFE) obj; 118197c42addSMatthew G. Knepley 11820f2d7e86SMatthew G. Knepley ierr = PetscFERefine(fe, &feRef[f]);CHKERRQ(ierr); 1183d69c5d34SMatthew G. Knepley ierr = PetscFEGetDimension(feRef[f], &rNb);CHKERRQ(ierr); 11840f2d7e86SMatthew G. Knepley ierr = PetscFEGetNumComponents(fe, &Nc);CHKERRQ(ierr); 118597c42addSMatthew G. Knepley } else if (id == PETSCFV_CLASSID) { 118697c42addSMatthew G. Knepley PetscFV fv = (PetscFV) obj; 118797c42addSMatthew G. Knepley PetscDualSpace Q; 118897c42addSMatthew G. Knepley 118997c42addSMatthew G. Knepley ierr = PetscFVRefine(fv, &fvRef[f]);CHKERRQ(ierr); 119097c42addSMatthew G. Knepley ierr = PetscFVGetDualSpace(fvRef[f], &Q);CHKERRQ(ierr); 119197c42addSMatthew G. Knepley ierr = PetscDualSpaceGetDimension(Q, &rNb);CHKERRQ(ierr); 119297c42addSMatthew G. Knepley ierr = PetscFVGetNumComponents(fv, &Nc);CHKERRQ(ierr); 119397c42addSMatthew G. Knepley } 11940f2d7e86SMatthew G. Knepley rTotDim += rNb*Nc; 1195d69c5d34SMatthew G. Knepley } 11962764a2aaSMatthew G. Knepley ierr = PetscDSGetTotalDimension(prob, &cTotDim);CHKERRQ(ierr); 11970f2d7e86SMatthew G. Knepley ierr = PetscMalloc1(rTotDim*cTotDim,&elemMat);CHKERRQ(ierr); 11980f2d7e86SMatthew G. Knepley ierr = PetscMemzero(elemMat, rTotDim*cTotDim * sizeof(PetscScalar));CHKERRQ(ierr); 1199d69c5d34SMatthew G. Knepley for (fieldI = 0, offsetI = 0; fieldI < Nf; ++fieldI) { 1200d69c5d34SMatthew G. Knepley PetscDualSpace Qref; 1201d69c5d34SMatthew G. Knepley PetscQuadrature f; 1202d69c5d34SMatthew G. Knepley const PetscReal *qpoints, *qweights; 1203d69c5d34SMatthew G. Knepley PetscReal *points; 1204d69c5d34SMatthew G. Knepley PetscInt npoints = 0, Nc, Np, fpdim, i, k, p, d; 1205d69c5d34SMatthew G. Knepley 1206d69c5d34SMatthew G. Knepley /* Compose points from all dual basis functionals */ 120797c42addSMatthew G. Knepley if (feRef[fieldI]) { 1208d69c5d34SMatthew G. Knepley ierr = PetscFEGetDualSpace(feRef[fieldI], &Qref);CHKERRQ(ierr); 12090f2d7e86SMatthew G. Knepley ierr = PetscFEGetNumComponents(feRef[fieldI], &Nc);CHKERRQ(ierr); 121097c42addSMatthew G. Knepley } else { 121197c42addSMatthew G. Knepley ierr = PetscFVGetDualSpace(fvRef[fieldI], &Qref);CHKERRQ(ierr); 121297c42addSMatthew G. Knepley ierr = PetscFVGetNumComponents(fvRef[fieldI], &Nc);CHKERRQ(ierr); 121397c42addSMatthew G. Knepley } 1214d69c5d34SMatthew G. Knepley ierr = PetscDualSpaceGetDimension(Qref, &fpdim);CHKERRQ(ierr); 1215d69c5d34SMatthew G. Knepley for (i = 0; i < fpdim; ++i) { 1216d69c5d34SMatthew G. Knepley ierr = PetscDualSpaceGetFunctional(Qref, i, &f);CHKERRQ(ierr); 1217d69c5d34SMatthew G. Knepley ierr = PetscQuadratureGetData(f, NULL, &Np, NULL, NULL);CHKERRQ(ierr); 1218d69c5d34SMatthew G. Knepley npoints += Np; 1219d69c5d34SMatthew G. Knepley } 1220d69c5d34SMatthew G. Knepley ierr = PetscMalloc1(npoints*dim,&points);CHKERRQ(ierr); 1221d69c5d34SMatthew G. Knepley for (i = 0, k = 0; i < fpdim; ++i) { 1222d69c5d34SMatthew G. Knepley ierr = PetscDualSpaceGetFunctional(Qref, i, &f);CHKERRQ(ierr); 1223d69c5d34SMatthew G. Knepley ierr = PetscQuadratureGetData(f, NULL, &Np, &qpoints, NULL);CHKERRQ(ierr); 1224d69c5d34SMatthew G. Knepley for (p = 0; p < Np; ++p, ++k) for (d = 0; d < dim; ++d) points[k*dim+d] = qpoints[p*dim+d]; 1225d69c5d34SMatthew G. Knepley } 1226d69c5d34SMatthew G. Knepley 1227d69c5d34SMatthew G. Knepley for (fieldJ = 0, offsetJ = 0; fieldJ < Nf; ++fieldJ) { 122897c42addSMatthew G. Knepley PetscObject obj; 122997c42addSMatthew G. Knepley PetscClassId id; 1230d69c5d34SMatthew G. Knepley PetscReal *B; 1231aa7890ccSMatthew G. Knepley PetscInt NcJ = 0, cpdim = 0, j; 1232d69c5d34SMatthew G. Knepley 123397c42addSMatthew G. Knepley ierr = PetscDSGetDiscretization(prob, fieldJ, &obj);CHKERRQ(ierr); 123497c42addSMatthew G. Knepley ierr = PetscObjectGetClassId(obj, &id);CHKERRQ(ierr); 123597c42addSMatthew G. Knepley if (id == PETSCFE_CLASSID) { 123697c42addSMatthew G. Knepley PetscFE fe = (PetscFE) obj; 1237d69c5d34SMatthew G. Knepley 1238d69c5d34SMatthew G. Knepley /* Evaluate basis at points */ 12390f2d7e86SMatthew G. Knepley ierr = PetscFEGetNumComponents(fe, &NcJ);CHKERRQ(ierr); 12400f2d7e86SMatthew G. Knepley ierr = PetscFEGetDimension(fe, &cpdim);CHKERRQ(ierr); 1241ffe73a53SMatthew G. Knepley /* For now, fields only interpolate themselves */ 1242ffe73a53SMatthew G. Knepley if (fieldI == fieldJ) { 12437c927364SMatthew G. Knepley if (Nc != NcJ) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of components in fine space field %d does not match coarse field %d", Nc, NcJ); 12440f2d7e86SMatthew G. Knepley ierr = PetscFEGetTabulation(fe, npoints, points, &B, NULL, NULL);CHKERRQ(ierr); 1245d69c5d34SMatthew G. Knepley for (i = 0, k = 0; i < fpdim; ++i) { 1246d69c5d34SMatthew G. Knepley ierr = PetscDualSpaceGetFunctional(Qref, i, &f);CHKERRQ(ierr); 1247d69c5d34SMatthew G. Knepley ierr = PetscQuadratureGetData(f, NULL, &Np, NULL, &qweights);CHKERRQ(ierr); 1248d69c5d34SMatthew G. Knepley for (p = 0; p < Np; ++p, ++k) { 124936a6d9c0SMatthew G. Knepley for (j = 0; j < cpdim; ++j) { 12500f2d7e86SMatthew G. Knepley for (c = 0; c < Nc; ++c) elemMat[(offsetI + i*Nc + c)*cTotDim + offsetJ + j*NcJ + c] += B[k*cpdim*NcJ+j*Nc+c]*qweights[p]; 125136a6d9c0SMatthew G. Knepley } 1252d69c5d34SMatthew G. Knepley } 1253d69c5d34SMatthew G. Knepley } 12540f2d7e86SMatthew G. Knepley ierr = PetscFERestoreTabulation(fe, npoints, points, &B, NULL, NULL);CHKERRQ(ierr);CHKERRQ(ierr); 1255ffe73a53SMatthew G. Knepley } 125697c42addSMatthew G. Knepley } else if (id == PETSCFV_CLASSID) { 125797c42addSMatthew G. Knepley PetscFV fv = (PetscFV) obj; 125897c42addSMatthew G. Knepley 125997c42addSMatthew G. Knepley /* Evaluate constant function at points */ 126097c42addSMatthew G. Knepley ierr = PetscFVGetNumComponents(fv, &NcJ);CHKERRQ(ierr); 126197c42addSMatthew G. Knepley cpdim = 1; 126297c42addSMatthew G. Knepley /* For now, fields only interpolate themselves */ 126397c42addSMatthew G. Knepley if (fieldI == fieldJ) { 126497c42addSMatthew G. Knepley if (Nc != NcJ) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of components in fine space field %d does not match coarse field %d", Nc, NcJ); 126597c42addSMatthew G. Knepley for (i = 0, k = 0; i < fpdim; ++i) { 126697c42addSMatthew G. Knepley ierr = PetscDualSpaceGetFunctional(Qref, i, &f);CHKERRQ(ierr); 126797c42addSMatthew G. Knepley ierr = PetscQuadratureGetData(f, NULL, &Np, NULL, &qweights);CHKERRQ(ierr); 126897c42addSMatthew G. Knepley for (p = 0; p < Np; ++p, ++k) { 126997c42addSMatthew G. Knepley for (j = 0; j < cpdim; ++j) { 127097c42addSMatthew G. Knepley for (c = 0; c < Nc; ++c) elemMat[(offsetI + i*Nc + c)*cTotDim + offsetJ + j*NcJ + c] += 1.0*qweights[p]; 127197c42addSMatthew G. Knepley } 127297c42addSMatthew G. Knepley } 127397c42addSMatthew G. Knepley } 127497c42addSMatthew G. Knepley } 127597c42addSMatthew G. Knepley } 127636a6d9c0SMatthew G. Knepley offsetJ += cpdim*NcJ; 1277d69c5d34SMatthew G. Knepley } 1278d69c5d34SMatthew G. Knepley offsetI += fpdim*Nc; 1279549a8adaSMatthew G. Knepley ierr = PetscFree(points);CHKERRQ(ierr); 1280d69c5d34SMatthew G. Knepley } 12810f2d7e86SMatthew G. Knepley if (mesh->printFEM > 1) {ierr = DMPrintCellMatrix(0, name, rTotDim, cTotDim, elemMat);CHKERRQ(ierr);} 12827f5b169aSMatthew G. Knepley /* Preallocate matrix */ 12837f5b169aSMatthew G. Knepley { 1284c094ef40SMatthew G. Knepley Mat preallocator; 1285c094ef40SMatthew G. Knepley PetscScalar *vals; 1286c094ef40SMatthew G. Knepley PetscInt *cellCIndices, *cellFIndices; 1287c094ef40SMatthew G. Knepley PetscInt locRows, locCols, cell; 12887f5b169aSMatthew G. Knepley 1289c094ef40SMatthew G. Knepley ierr = MatGetLocalSize(In, &locRows, &locCols);CHKERRQ(ierr); 1290c094ef40SMatthew G. Knepley ierr = MatCreate(PetscObjectComm((PetscObject) In), &preallocator);CHKERRQ(ierr); 1291c094ef40SMatthew G. Knepley ierr = MatSetType(preallocator, MATPREALLOCATOR);CHKERRQ(ierr); 1292c094ef40SMatthew G. Knepley ierr = MatSetSizes(preallocator, locRows, locCols, PETSC_DETERMINE, PETSC_DETERMINE);CHKERRQ(ierr); 1293c094ef40SMatthew G. Knepley ierr = MatSetUp(preallocator);CHKERRQ(ierr); 1294c094ef40SMatthew G. Knepley ierr = PetscCalloc3(rTotDim*cTotDim, &vals,cTotDim,&cellCIndices,rTotDim,&cellFIndices);CHKERRQ(ierr); 12957f5b169aSMatthew G. Knepley for (cell = cStart; cell < cEnd; ++cell) { 12967f5b169aSMatthew G. Knepley ierr = DMPlexMatGetClosureIndicesRefined(dmf, fsection, fglobalSection, dmc, csection, cglobalSection, cell, cellCIndices, cellFIndices);CHKERRQ(ierr); 1297c094ef40SMatthew G. Knepley ierr = MatSetValues(preallocator, rTotDim, cellFIndices, cTotDim, cellCIndices, vals, INSERT_VALUES);CHKERRQ(ierr); 12987f5b169aSMatthew G. Knepley } 1299c094ef40SMatthew G. Knepley ierr = PetscFree3(vals,cellCIndices,cellFIndices);CHKERRQ(ierr); 1300c094ef40SMatthew G. Knepley ierr = MatAssemblyBegin(preallocator, MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 1301c094ef40SMatthew G. Knepley ierr = MatAssemblyEnd(preallocator, MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 1302c094ef40SMatthew G. Knepley ierr = MatPreallocatorPreallocate(preallocator, PETSC_TRUE, In);CHKERRQ(ierr); 1303c094ef40SMatthew G. Knepley ierr = MatDestroy(&preallocator);CHKERRQ(ierr); 13047f5b169aSMatthew G. Knepley } 13057f5b169aSMatthew G. Knepley /* Fill matrix */ 13067f5b169aSMatthew G. Knepley ierr = MatZeroEntries(In);CHKERRQ(ierr); 1307d69c5d34SMatthew G. Knepley for (c = cStart; c < cEnd; ++c) { 1308934789fcSMatthew G. Knepley ierr = DMPlexMatSetClosureRefined(dmf, fsection, fglobalSection, dmc, csection, cglobalSection, In, c, elemMat, INSERT_VALUES);CHKERRQ(ierr); 1309d69c5d34SMatthew G. Knepley } 1310549a8adaSMatthew G. Knepley for (f = 0; f < Nf; ++f) {ierr = PetscFEDestroy(&feRef[f]);CHKERRQ(ierr);} 131197c42addSMatthew G. Knepley ierr = PetscFree2(feRef,fvRef);CHKERRQ(ierr); 1312549a8adaSMatthew G. Knepley ierr = PetscFree(elemMat);CHKERRQ(ierr); 1313934789fcSMatthew G. Knepley ierr = MatAssemblyBegin(In, MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 1314934789fcSMatthew G. Knepley ierr = MatAssemblyEnd(In, MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 1315d69c5d34SMatthew G. Knepley if (mesh->printFEM) { 1316d69c5d34SMatthew G. Knepley ierr = PetscPrintf(PETSC_COMM_WORLD, "%s:\n", name);CHKERRQ(ierr); 1317934789fcSMatthew G. Knepley ierr = MatChop(In, 1.0e-10);CHKERRQ(ierr); 1318934789fcSMatthew G. Knepley ierr = MatView(In, PETSC_VIEWER_STDOUT_WORLD);CHKERRQ(ierr); 1319d69c5d34SMatthew G. Knepley } 1320d69c5d34SMatthew G. Knepley ierr = PetscLogEventEnd(DMPLEX_InterpolatorFEM,dmc,dmf,0,0);CHKERRQ(ierr); 1321d69c5d34SMatthew G. Knepley PetscFunctionReturn(0); 1322d69c5d34SMatthew G. Knepley } 13236c73c22cSMatthew G. Knepley 132468132eb9SMatthew G. Knepley /*@ 132568132eb9SMatthew G. Knepley DMPlexComputeInterpolatorGeneral - Form the local portion of the interpolation matrix I from the coarse DM to a non-nested fine DM. 132668132eb9SMatthew G. Knepley 132768132eb9SMatthew G. Knepley Input Parameters: 132868132eb9SMatthew G. Knepley + dmf - The fine mesh 132968132eb9SMatthew G. Knepley . dmc - The coarse mesh 133068132eb9SMatthew G. Knepley - user - The user context 133168132eb9SMatthew G. Knepley 133268132eb9SMatthew G. Knepley Output Parameter: 133368132eb9SMatthew G. Knepley . In - The interpolation matrix 133468132eb9SMatthew G. Knepley 133568132eb9SMatthew G. Knepley Level: developer 133668132eb9SMatthew G. Knepley 133768132eb9SMatthew G. Knepley .seealso: DMPlexComputeInterpolatorNested(), DMPlexComputeJacobianFEM() 133868132eb9SMatthew G. Knepley @*/ 133968132eb9SMatthew G. Knepley PetscErrorCode DMPlexComputeInterpolatorGeneral(DM dmc, DM dmf, Mat In, void *user) 13404ef9d792SMatthew G. Knepley { 134164e98e1dSMatthew G. Knepley DM_Plex *mesh = (DM_Plex *) dmf->data; 134264e98e1dSMatthew G. Knepley const char *name = "Interpolator"; 13434ef9d792SMatthew G. Knepley PetscDS prob; 13444ef9d792SMatthew G. Knepley PetscSection fsection, csection, globalFSection, globalCSection; 13454ef9d792SMatthew G. Knepley PetscHashJK ht; 13464ef9d792SMatthew G. Knepley PetscLayout rLayout; 13474ef9d792SMatthew G. Knepley PetscInt *dnz, *onz; 13484ef9d792SMatthew G. Knepley PetscInt locRows, rStart, rEnd; 13494ef9d792SMatthew G. Knepley PetscReal *x, *v0, *J, *invJ, detJ; 13504ef9d792SMatthew G. Knepley PetscReal *v0c, *Jc, *invJc, detJc; 13514ef9d792SMatthew G. Knepley PetscScalar *elemMat; 13524ef9d792SMatthew G. Knepley PetscInt dim, Nf, field, totDim, cStart, cEnd, cell, ccell; 13534ef9d792SMatthew G. Knepley PetscErrorCode ierr; 13544ef9d792SMatthew G. Knepley 13554ef9d792SMatthew G. Knepley PetscFunctionBegin; 135677711781SMatthew G. Knepley ierr = PetscLogEventBegin(DMPLEX_InterpolatorFEM,dmc,dmf,0,0);CHKERRQ(ierr); 13574ef9d792SMatthew G. Knepley ierr = DMGetCoordinateDim(dmc, &dim);CHKERRQ(ierr); 13584ef9d792SMatthew G. Knepley ierr = DMGetDS(dmc, &prob);CHKERRQ(ierr); 13594ef9d792SMatthew G. Knepley ierr = PetscDSGetRefCoordArrays(prob, &x, NULL);CHKERRQ(ierr); 13604ef9d792SMatthew G. Knepley ierr = PetscDSGetNumFields(prob, &Nf);CHKERRQ(ierr); 13614ef9d792SMatthew G. Knepley ierr = PetscMalloc3(dim,&v0,dim*dim,&J,dim*dim,&invJ);CHKERRQ(ierr); 13624ef9d792SMatthew G. Knepley ierr = PetscMalloc3(dim,&v0c,dim*dim,&Jc,dim*dim,&invJc);CHKERRQ(ierr); 13634ef9d792SMatthew G. Knepley ierr = DMGetDefaultSection(dmf, &fsection);CHKERRQ(ierr); 13644ef9d792SMatthew G. Knepley ierr = DMGetDefaultGlobalSection(dmf, &globalFSection);CHKERRQ(ierr); 13654ef9d792SMatthew G. Knepley ierr = DMGetDefaultSection(dmc, &csection);CHKERRQ(ierr); 13664ef9d792SMatthew G. Knepley ierr = DMGetDefaultGlobalSection(dmc, &globalCSection);CHKERRQ(ierr); 13674ef9d792SMatthew G. Knepley ierr = DMPlexGetHeightStratum(dmf, 0, &cStart, &cEnd);CHKERRQ(ierr); 13684ef9d792SMatthew G. Knepley ierr = PetscDSGetTotalDimension(prob, &totDim);CHKERRQ(ierr); 13694ef9d792SMatthew G. Knepley ierr = PetscMalloc1(totDim*totDim, &elemMat);CHKERRQ(ierr); 13704ef9d792SMatthew G. Knepley 13714ef9d792SMatthew G. Knepley ierr = MatGetLocalSize(In, &locRows, NULL);CHKERRQ(ierr); 13724ef9d792SMatthew G. Knepley ierr = PetscLayoutCreate(PetscObjectComm((PetscObject) In), &rLayout);CHKERRQ(ierr); 13734ef9d792SMatthew G. Knepley ierr = PetscLayoutSetLocalSize(rLayout, locRows);CHKERRQ(ierr); 13744ef9d792SMatthew G. Knepley ierr = PetscLayoutSetBlockSize(rLayout, 1);CHKERRQ(ierr); 13754ef9d792SMatthew G. Knepley ierr = PetscLayoutSetUp(rLayout);CHKERRQ(ierr); 13764ef9d792SMatthew G. Knepley ierr = PetscLayoutGetRange(rLayout, &rStart, &rEnd);CHKERRQ(ierr); 13774ef9d792SMatthew G. Knepley ierr = PetscLayoutDestroy(&rLayout);CHKERRQ(ierr); 13784ef9d792SMatthew G. Knepley ierr = PetscCalloc2(locRows,&dnz,locRows,&onz);CHKERRQ(ierr); 13794ef9d792SMatthew G. Knepley ierr = PetscHashJKCreate(&ht);CHKERRQ(ierr); 13804ef9d792SMatthew G. Knepley for (field = 0; field < Nf; ++field) { 13814ef9d792SMatthew G. Knepley PetscObject obj; 13824ef9d792SMatthew G. Knepley PetscClassId id; 1383c0d7054bSMatthew G. Knepley PetscDualSpace Q = NULL; 13844ef9d792SMatthew G. Knepley PetscQuadrature f; 138517f047d8SMatthew G. Knepley const PetscReal *qpoints; 138617f047d8SMatthew G. Knepley PetscInt Nc, Np, fpdim, i, d; 13874ef9d792SMatthew G. Knepley 13884ef9d792SMatthew G. Knepley ierr = PetscDSGetDiscretization(prob, field, &obj);CHKERRQ(ierr); 13894ef9d792SMatthew G. Knepley ierr = PetscObjectGetClassId(obj, &id);CHKERRQ(ierr); 13904ef9d792SMatthew G. Knepley if (id == PETSCFE_CLASSID) { 13914ef9d792SMatthew G. Knepley PetscFE fe = (PetscFE) obj; 13924ef9d792SMatthew G. Knepley 13934ef9d792SMatthew G. Knepley ierr = PetscFEGetDualSpace(fe, &Q);CHKERRQ(ierr); 13944ef9d792SMatthew G. Knepley ierr = PetscFEGetNumComponents(fe, &Nc);CHKERRQ(ierr); 13954ef9d792SMatthew G. Knepley } else if (id == PETSCFV_CLASSID) { 13964ef9d792SMatthew G. Knepley PetscFV fv = (PetscFV) obj; 13974ef9d792SMatthew G. Knepley 13984ef9d792SMatthew G. Knepley ierr = PetscFVGetDualSpace(fv, &Q);CHKERRQ(ierr); 13994ef9d792SMatthew G. Knepley Nc = 1; 14004ef9d792SMatthew G. Knepley } 14014ef9d792SMatthew G. Knepley ierr = PetscDualSpaceGetDimension(Q, &fpdim);CHKERRQ(ierr); 14024ef9d792SMatthew G. Knepley /* For each fine grid cell */ 14034ef9d792SMatthew G. Knepley for (cell = cStart; cell < cEnd; ++cell) { 14044ef9d792SMatthew G. Knepley PetscInt *findices, *cindices; 14054ef9d792SMatthew G. Knepley PetscInt numFIndices, numCIndices; 14064ef9d792SMatthew G. Knepley 14076ecaa68aSToby Isaac ierr = DMPlexGetClosureIndices(dmf, fsection, globalFSection, cell, &numFIndices, &findices, NULL);CHKERRQ(ierr); 14084ef9d792SMatthew G. Knepley ierr = DMPlexComputeCellGeometryFEM(dmf, cell, NULL, v0, J, invJ, &detJ);CHKERRQ(ierr); 14094ef9d792SMatthew G. Knepley if (numFIndices != fpdim*Nc) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of fine indices %d != %d dual basis vecs", numFIndices, fpdim*Nc); 14104ef9d792SMatthew G. Knepley for (i = 0; i < fpdim; ++i) { 14114ef9d792SMatthew G. Knepley Vec pointVec; 14124ef9d792SMatthew G. Knepley PetscScalar *pV; 14133a93e3b7SToby Isaac PetscSF coarseCellSF = NULL; 14143a93e3b7SToby Isaac const PetscSFNode *coarseCells; 14154ef9d792SMatthew G. Knepley PetscInt numCoarseCells, q, r, c; 14164ef9d792SMatthew G. Knepley 14174ef9d792SMatthew G. Knepley /* Get points from the dual basis functional quadrature */ 14184ef9d792SMatthew G. Knepley ierr = PetscDualSpaceGetFunctional(Q, i, &f);CHKERRQ(ierr); 14194ef9d792SMatthew G. Knepley ierr = PetscQuadratureGetData(f, NULL, &Np, &qpoints, NULL);CHKERRQ(ierr); 14204ef9d792SMatthew G. Knepley ierr = VecCreateSeq(PETSC_COMM_SELF, Np*dim, &pointVec);CHKERRQ(ierr); 14214ef9d792SMatthew G. Knepley ierr = VecSetBlockSize(pointVec, dim);CHKERRQ(ierr); 14224ef9d792SMatthew G. Knepley ierr = VecGetArray(pointVec, &pV);CHKERRQ(ierr); 14234ef9d792SMatthew G. Knepley for (q = 0; q < Np; ++q) { 14244ef9d792SMatthew G. Knepley /* Transform point to real space */ 14254ef9d792SMatthew G. Knepley CoordinatesRefToReal(dim, dim, v0, J, &qpoints[q*dim], x); 14264ef9d792SMatthew G. Knepley for (d = 0; d < dim; ++d) pV[q*dim+d] = x[d]; 14274ef9d792SMatthew G. Knepley } 14284ef9d792SMatthew G. Knepley ierr = VecRestoreArray(pointVec, &pV);CHKERRQ(ierr); 14294ef9d792SMatthew G. Knepley /* Get set of coarse cells that overlap points (would like to group points by coarse cell) */ 143062a38674SMatthew G. Knepley ierr = DMLocatePoints(dmc, pointVec, DM_POINTLOCATION_NEAREST, &coarseCellSF);CHKERRQ(ierr); 14313a93e3b7SToby Isaac ierr = PetscSFViewFromOptions(coarseCellSF, NULL, "-interp_sf_view");CHKERRQ(ierr); 14324ef9d792SMatthew G. Knepley /* Update preallocation info */ 14333a93e3b7SToby Isaac ierr = PetscSFGetGraph(coarseCellSF, NULL, &numCoarseCells, NULL, &coarseCells);CHKERRQ(ierr); 14343a93e3b7SToby Isaac if (numCoarseCells != Np) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Not all closure points located"); 14354ef9d792SMatthew G. Knepley for (r = 0; r < Nc; ++r) { 14364ef9d792SMatthew G. Knepley PetscHashJKKey key; 14374ef9d792SMatthew G. Knepley PetscHashJKIter missing, iter; 14384ef9d792SMatthew G. Knepley 14394ef9d792SMatthew G. Knepley key.j = findices[i*Nc+r]; 14404ef9d792SMatthew G. Knepley if (key.j < 0) continue; 14414ef9d792SMatthew G. Knepley /* Get indices for coarse elements */ 14424ef9d792SMatthew G. Knepley for (ccell = 0; ccell < numCoarseCells; ++ccell) { 14433a93e3b7SToby Isaac ierr = DMPlexGetClosureIndices(dmc, csection, globalCSection, coarseCells[ccell].index, &numCIndices, &cindices, NULL);CHKERRQ(ierr); 14444ef9d792SMatthew G. Knepley for (c = 0; c < numCIndices; ++c) { 14454ef9d792SMatthew G. Knepley key.k = cindices[c]; 14464ef9d792SMatthew G. Knepley if (key.k < 0) continue; 14474ef9d792SMatthew G. Knepley ierr = PetscHashJKPut(ht, key, &missing, &iter);CHKERRQ(ierr); 14484ef9d792SMatthew G. Knepley if (missing) { 14494ef9d792SMatthew G. Knepley ierr = PetscHashJKSet(ht, iter, 1);CHKERRQ(ierr); 14504ef9d792SMatthew G. Knepley if ((key.k >= rStart) && (key.k < rEnd)) ++dnz[key.j-rStart]; 14514ef9d792SMatthew G. Knepley else ++onz[key.j-rStart]; 14524ef9d792SMatthew G. Knepley } 14534ef9d792SMatthew G. Knepley } 14543a93e3b7SToby Isaac ierr = DMPlexRestoreClosureIndices(dmc, csection, globalCSection, coarseCells[ccell].index, &numCIndices, &cindices, NULL);CHKERRQ(ierr); 14554ef9d792SMatthew G. Knepley } 14564ef9d792SMatthew G. Knepley } 14573a93e3b7SToby Isaac ierr = PetscSFDestroy(&coarseCellSF);CHKERRQ(ierr); 14584ef9d792SMatthew G. Knepley ierr = VecDestroy(&pointVec);CHKERRQ(ierr); 14594ef9d792SMatthew G. Knepley } 146046bdb399SToby Isaac ierr = DMPlexRestoreClosureIndices(dmf, fsection, globalFSection, cell, &numFIndices, &findices, NULL);CHKERRQ(ierr); 14614ef9d792SMatthew G. Knepley } 14624ef9d792SMatthew G. Knepley } 14634ef9d792SMatthew G. Knepley ierr = PetscHashJKDestroy(&ht);CHKERRQ(ierr); 14644ef9d792SMatthew G. Knepley ierr = MatXAIJSetPreallocation(In, 1, dnz, onz, NULL, NULL);CHKERRQ(ierr); 14654ef9d792SMatthew G. Knepley ierr = MatSetOption(In, MAT_NEW_NONZERO_ALLOCATION_ERR,PETSC_TRUE);CHKERRQ(ierr); 14664ef9d792SMatthew G. Knepley ierr = PetscFree2(dnz,onz);CHKERRQ(ierr); 14674ef9d792SMatthew G. Knepley for (field = 0; field < Nf; ++field) { 14684ef9d792SMatthew G. Knepley PetscObject obj; 14694ef9d792SMatthew G. Knepley PetscClassId id; 1470c0d7054bSMatthew G. Knepley PetscDualSpace Q = NULL; 14714ef9d792SMatthew G. Knepley PetscQuadrature f; 14724ef9d792SMatthew G. Knepley const PetscReal *qpoints, *qweights; 147317f047d8SMatthew G. Knepley PetscInt Nc, Np, fpdim, i, d; 14744ef9d792SMatthew G. Knepley 14754ef9d792SMatthew G. Knepley ierr = PetscDSGetDiscretization(prob, field, &obj);CHKERRQ(ierr); 14764ef9d792SMatthew G. Knepley ierr = PetscObjectGetClassId(obj, &id);CHKERRQ(ierr); 14774ef9d792SMatthew G. Knepley if (id == PETSCFE_CLASSID) { 14784ef9d792SMatthew G. Knepley PetscFE fe = (PetscFE) obj; 14794ef9d792SMatthew G. Knepley 14804ef9d792SMatthew G. Knepley ierr = PetscFEGetDualSpace(fe, &Q);CHKERRQ(ierr); 14814ef9d792SMatthew G. Knepley ierr = PetscFEGetNumComponents(fe, &Nc);CHKERRQ(ierr); 14824ef9d792SMatthew G. Knepley } else if (id == PETSCFV_CLASSID) { 14834ef9d792SMatthew G. Knepley PetscFV fv = (PetscFV) obj; 14844ef9d792SMatthew G. Knepley 14854ef9d792SMatthew G. Knepley ierr = PetscFVGetDualSpace(fv, &Q);CHKERRQ(ierr); 14864ef9d792SMatthew G. Knepley Nc = 1; 14874ef9d792SMatthew G. Knepley } 14884ef9d792SMatthew G. Knepley ierr = PetscDualSpaceGetDimension(Q, &fpdim);CHKERRQ(ierr); 14894ef9d792SMatthew G. Knepley /* For each fine grid cell */ 14904ef9d792SMatthew G. Knepley for (cell = cStart; cell < cEnd; ++cell) { 14914ef9d792SMatthew G. Knepley PetscInt *findices, *cindices; 14924ef9d792SMatthew G. Knepley PetscInt numFIndices, numCIndices; 14934ef9d792SMatthew G. Knepley 14946ecaa68aSToby Isaac ierr = DMPlexGetClosureIndices(dmf, fsection, globalFSection, cell, &numFIndices, &findices, NULL);CHKERRQ(ierr); 14954ef9d792SMatthew G. Knepley ierr = DMPlexComputeCellGeometryFEM(dmf, cell, NULL, v0, J, invJ, &detJ);CHKERRQ(ierr); 14964ef9d792SMatthew G. Knepley if (numFIndices != fpdim*Nc) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of fine indices %d != %d dual basis vecs", numFIndices, fpdim*Nc); 14974ef9d792SMatthew G. Knepley for (i = 0; i < fpdim; ++i) { 14984ef9d792SMatthew G. Knepley Vec pointVec; 14994ef9d792SMatthew G. Knepley PetscScalar *pV; 150012111d7cSToby Isaac PetscSF coarseCellSF = NULL; 15013a93e3b7SToby Isaac const PetscSFNode *coarseCells; 150217f047d8SMatthew G. Knepley PetscInt numCoarseCells, cpdim, q, c, j; 15034ef9d792SMatthew G. Knepley 15044ef9d792SMatthew G. Knepley /* Get points from the dual basis functional quadrature */ 15054ef9d792SMatthew G. Knepley ierr = PetscDualSpaceGetFunctional(Q, i, &f);CHKERRQ(ierr); 15064ef9d792SMatthew G. Knepley ierr = PetscQuadratureGetData(f, NULL, &Np, &qpoints, &qweights);CHKERRQ(ierr); 15074ef9d792SMatthew G. Knepley ierr = VecCreateSeq(PETSC_COMM_SELF, Np*dim, &pointVec);CHKERRQ(ierr); 15084ef9d792SMatthew G. Knepley ierr = VecSetBlockSize(pointVec, dim);CHKERRQ(ierr); 15094ef9d792SMatthew G. Knepley ierr = VecGetArray(pointVec, &pV);CHKERRQ(ierr); 15104ef9d792SMatthew G. Knepley for (q = 0; q < Np; ++q) { 15114ef9d792SMatthew G. Knepley /* Transform point to real space */ 15124ef9d792SMatthew G. Knepley CoordinatesRefToReal(dim, dim, v0, J, &qpoints[q*dim], x); 15134ef9d792SMatthew G. Knepley for (d = 0; d < dim; ++d) pV[q*dim+d] = x[d]; 15144ef9d792SMatthew G. Knepley } 15154ef9d792SMatthew G. Knepley ierr = VecRestoreArray(pointVec, &pV);CHKERRQ(ierr); 15164ef9d792SMatthew G. Knepley /* Get set of coarse cells that overlap points (would like to group points by coarse cell) */ 151762a38674SMatthew G. Knepley ierr = DMLocatePoints(dmc, pointVec, DM_POINTLOCATION_NEAREST, &coarseCellSF);CHKERRQ(ierr); 15184ef9d792SMatthew G. Knepley /* Update preallocation info */ 15193a93e3b7SToby Isaac ierr = PetscSFGetGraph(coarseCellSF, NULL, &numCoarseCells, NULL, &coarseCells);CHKERRQ(ierr); 15203a93e3b7SToby Isaac if (numCoarseCells != Np) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Not all closure points located"); 15214ef9d792SMatthew G. Knepley ierr = VecGetArray(pointVec, &pV);CHKERRQ(ierr); 15224ef9d792SMatthew G. Knepley for (ccell = 0; ccell < numCoarseCells; ++ccell) { 1523826eb36dSMatthew G. Knepley PetscReal pVReal[3]; 1524826eb36dSMatthew G. Knepley 15253a93e3b7SToby Isaac ierr = DMPlexGetClosureIndices(dmc, csection, globalCSection, coarseCells[ccell].index, &numCIndices, &cindices, NULL);CHKERRQ(ierr); 15264ef9d792SMatthew G. Knepley /* Transform points from real space to coarse reference space */ 15273a93e3b7SToby Isaac ierr = DMPlexComputeCellGeometryFEM(dmc, coarseCells[ccell].index, NULL, v0c, Jc, invJc, &detJc);CHKERRQ(ierr); 1528e2d86523SMatthew G. Knepley for (d = 0; d < dim; ++d) pVReal[d] = PetscRealPart(pV[ccell*dim+d]); 1529826eb36dSMatthew G. Knepley CoordinatesRealToRef(dim, dim, v0c, invJc, pVReal, x); 15304ef9d792SMatthew G. Knepley 15314ef9d792SMatthew G. Knepley if (id == PETSCFE_CLASSID) { 15324ef9d792SMatthew G. Knepley PetscFE fe = (PetscFE) obj; 15334ef9d792SMatthew G. Knepley PetscReal *B; 15344ef9d792SMatthew G. Knepley 15354ef9d792SMatthew G. Knepley /* Evaluate coarse basis on contained point */ 15364ef9d792SMatthew G. Knepley ierr = PetscFEGetDimension(fe, &cpdim);CHKERRQ(ierr); 15374ef9d792SMatthew G. Knepley ierr = PetscFEGetTabulation(fe, 1, x, &B, NULL, NULL);CHKERRQ(ierr); 1538bdeb5f8fSMatthew G. Knepley ierr = PetscMemzero(elemMat, cpdim*Nc*Nc * sizeof(PetscScalar));CHKERRQ(ierr); 15394ef9d792SMatthew G. Knepley /* Get elemMat entries by multiplying by weight */ 15404ef9d792SMatthew G. Knepley for (j = 0; j < cpdim; ++j) { 15414ef9d792SMatthew G. Knepley for (c = 0; c < Nc; ++c) elemMat[(c*cpdim + j)*Nc + c] = B[j*Nc + c]*qweights[ccell]; 15424ef9d792SMatthew G. Knepley } 15434ef9d792SMatthew G. Knepley ierr = PetscFERestoreTabulation(fe, 1, x, &B, NULL, NULL);CHKERRQ(ierr);CHKERRQ(ierr); 15444ef9d792SMatthew G. Knepley } else { 15454ef9d792SMatthew G. Knepley cpdim = 1; 15464ef9d792SMatthew G. Knepley for (j = 0; j < cpdim; ++j) { 15474ef9d792SMatthew G. Knepley for (c = 0; c < Nc; ++c) elemMat[(c*cpdim + j)*Nc + c] = 1.0*qweights[ccell]; 15484ef9d792SMatthew G. Knepley } 15494ef9d792SMatthew G. Knepley } 15504ef9d792SMatthew G. Knepley /* Update interpolator */ 155164e98e1dSMatthew G. Knepley if (mesh->printFEM > 1) {ierr = DMPrintCellMatrix(cell, name, Nc, numCIndices, elemMat);CHKERRQ(ierr);} 1552bdeb5f8fSMatthew G. Knepley if (numCIndices != cpdim*Nc) SETERRQ3(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Number of element matrix columns %D != %D*%D", numCIndices, cpdim, Nc); 15534ef9d792SMatthew G. Knepley ierr = MatSetValues(In, Nc, &findices[i*Nc], numCIndices, cindices, elemMat, INSERT_VALUES);CHKERRQ(ierr); 15543a93e3b7SToby Isaac ierr = DMPlexRestoreClosureIndices(dmc, csection, globalCSection, coarseCells[ccell].index, &numCIndices, &cindices, NULL);CHKERRQ(ierr); 15554ef9d792SMatthew G. Knepley } 15564ef9d792SMatthew G. Knepley ierr = VecRestoreArray(pointVec, &pV);CHKERRQ(ierr); 15573a93e3b7SToby Isaac ierr = PetscSFDestroy(&coarseCellSF);CHKERRQ(ierr); 15584ef9d792SMatthew G. Knepley ierr = VecDestroy(&pointVec);CHKERRQ(ierr); 15594ef9d792SMatthew G. Knepley } 156046bdb399SToby Isaac ierr = DMPlexRestoreClosureIndices(dmf, fsection, globalFSection, cell, &numFIndices, &findices, NULL);CHKERRQ(ierr); 15614ef9d792SMatthew G. Knepley } 15624ef9d792SMatthew G. Knepley } 15634ef9d792SMatthew G. Knepley ierr = PetscFree3(v0,J,invJ);CHKERRQ(ierr); 15644ef9d792SMatthew G. Knepley ierr = PetscFree3(v0c,Jc,invJc);CHKERRQ(ierr); 15654ef9d792SMatthew G. Knepley ierr = PetscFree(elemMat);CHKERRQ(ierr); 15664ef9d792SMatthew G. Knepley ierr = MatAssemblyBegin(In, MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 15674ef9d792SMatthew G. Knepley ierr = MatAssemblyEnd(In, MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 156877711781SMatthew G. Knepley ierr = PetscLogEventEnd(DMPLEX_InterpolatorFEM,dmc,dmf,0,0);CHKERRQ(ierr); 15694ef9d792SMatthew G. Knepley PetscFunctionReturn(0); 15704ef9d792SMatthew G. Knepley } 15714ef9d792SMatthew G. Knepley 157246fa42a0SMatthew G. Knepley /*@ 157346fa42a0SMatthew G. Knepley DMPlexComputeInjectorFEM - Compute a mapping from coarse unknowns to fine unknowns 157446fa42a0SMatthew G. Knepley 157546fa42a0SMatthew G. Knepley Input Parameters: 157646fa42a0SMatthew G. Knepley + dmc - The coarse mesh 157746fa42a0SMatthew G. Knepley - dmf - The fine mesh 157846fa42a0SMatthew G. Knepley - user - The user context 157946fa42a0SMatthew G. Knepley 158046fa42a0SMatthew G. Knepley Output Parameter: 158146fa42a0SMatthew G. Knepley . sc - The mapping 158246fa42a0SMatthew G. Knepley 158346fa42a0SMatthew G. Knepley Level: developer 158446fa42a0SMatthew G. Knepley 158546fa42a0SMatthew G. Knepley .seealso: DMPlexComputeInterpolatorNested(), DMPlexComputeJacobianFEM() 158646fa42a0SMatthew G. Knepley @*/ 15877c927364SMatthew G. Knepley PetscErrorCode DMPlexComputeInjectorFEM(DM dmc, DM dmf, VecScatter *sc, void *user) 15887c927364SMatthew G. Knepley { 1589e9d4ef1bSMatthew G. Knepley PetscDS prob; 15907c927364SMatthew G. Knepley PetscFE *feRef; 159197c42addSMatthew G. Knepley PetscFV *fvRef; 15927c927364SMatthew G. Knepley Vec fv, cv; 15937c927364SMatthew G. Knepley IS fis, cis; 15947c927364SMatthew G. Knepley PetscSection fsection, fglobalSection, csection, cglobalSection; 15957c927364SMatthew G. Knepley PetscInt *cmap, *cellCIndices, *cellFIndices, *cindices, *findices; 15960bd915a7SMatthew G. Knepley PetscInt cTotDim, fTotDim = 0, Nf, f, field, cStart, cEnd, cEndInterior, c, dim, d, startC, endC, offsetC, offsetF, m; 15977c927364SMatthew G. Knepley PetscErrorCode ierr; 15987c927364SMatthew G. Knepley 15997c927364SMatthew G. Knepley PetscFunctionBegin; 160075a69067SMatthew G. Knepley ierr = PetscLogEventBegin(DMPLEX_InjectorFEM,dmc,dmf,0,0);CHKERRQ(ierr); 1601c73cfb54SMatthew G. Knepley ierr = DMGetDimension(dmf, &dim);CHKERRQ(ierr); 16027c927364SMatthew G. Knepley ierr = DMGetDefaultSection(dmf, &fsection);CHKERRQ(ierr); 16037c927364SMatthew G. Knepley ierr = DMGetDefaultGlobalSection(dmf, &fglobalSection);CHKERRQ(ierr); 16047c927364SMatthew G. Knepley ierr = DMGetDefaultSection(dmc, &csection);CHKERRQ(ierr); 16057c927364SMatthew G. Knepley ierr = DMGetDefaultGlobalSection(dmc, &cglobalSection);CHKERRQ(ierr); 16067c927364SMatthew G. Knepley ierr = PetscSectionGetNumFields(fsection, &Nf);CHKERRQ(ierr); 16077c927364SMatthew G. Knepley ierr = DMPlexGetHeightStratum(dmc, 0, &cStart, &cEnd);CHKERRQ(ierr); 16089ac3fadcSMatthew G. Knepley ierr = DMPlexGetHybridBounds(dmc, &cEndInterior, NULL, NULL, NULL);CHKERRQ(ierr); 16099ac3fadcSMatthew G. Knepley cEnd = cEndInterior < 0 ? cEnd : cEndInterior; 1610e9d4ef1bSMatthew G. Knepley ierr = DMGetDS(dmc, &prob);CHKERRQ(ierr); 161197c42addSMatthew G. Knepley ierr = PetscCalloc2(Nf,&feRef,Nf,&fvRef);CHKERRQ(ierr); 16127c927364SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 161397c42addSMatthew G. Knepley PetscObject obj; 161497c42addSMatthew G. Knepley PetscClassId id; 1615aa7890ccSMatthew G. Knepley PetscInt fNb = 0, Nc = 0; 16167c927364SMatthew G. Knepley 161797c42addSMatthew G. Knepley ierr = PetscDSGetDiscretization(prob, f, &obj);CHKERRQ(ierr); 161897c42addSMatthew G. Knepley ierr = PetscObjectGetClassId(obj, &id);CHKERRQ(ierr); 161997c42addSMatthew G. Knepley if (id == PETSCFE_CLASSID) { 162097c42addSMatthew G. Knepley PetscFE fe = (PetscFE) obj; 162197c42addSMatthew G. Knepley 16227c927364SMatthew G. Knepley ierr = PetscFERefine(fe, &feRef[f]);CHKERRQ(ierr); 16237c927364SMatthew G. Knepley ierr = PetscFEGetDimension(feRef[f], &fNb);CHKERRQ(ierr); 16247c927364SMatthew G. Knepley ierr = PetscFEGetNumComponents(fe, &Nc);CHKERRQ(ierr); 162597c42addSMatthew G. Knepley } else if (id == PETSCFV_CLASSID) { 162697c42addSMatthew G. Knepley PetscFV fv = (PetscFV) obj; 162797c42addSMatthew G. Knepley PetscDualSpace Q; 162897c42addSMatthew G. Knepley 162997c42addSMatthew G. Knepley ierr = PetscFVRefine(fv, &fvRef[f]);CHKERRQ(ierr); 163097c42addSMatthew G. Knepley ierr = PetscFVGetDualSpace(fvRef[f], &Q);CHKERRQ(ierr); 163197c42addSMatthew G. Knepley ierr = PetscDualSpaceGetDimension(Q, &fNb);CHKERRQ(ierr); 163297c42addSMatthew G. Knepley ierr = PetscFVGetNumComponents(fv, &Nc);CHKERRQ(ierr); 163397c42addSMatthew G. Knepley } 16347c927364SMatthew G. Knepley fTotDim += fNb*Nc; 16357c927364SMatthew G. Knepley } 1636e9d4ef1bSMatthew G. Knepley ierr = PetscDSGetTotalDimension(prob, &cTotDim);CHKERRQ(ierr); 16377c927364SMatthew G. Knepley ierr = PetscMalloc1(cTotDim,&cmap);CHKERRQ(ierr); 16387c927364SMatthew G. Knepley for (field = 0, offsetC = 0, offsetF = 0; field < Nf; ++field) { 16397c927364SMatthew G. Knepley PetscFE feC; 164097c42addSMatthew G. Knepley PetscFV fvC; 16417c927364SMatthew G. Knepley PetscDualSpace QF, QC; 16427c927364SMatthew G. Knepley PetscInt NcF, NcC, fpdim, cpdim; 16437c927364SMatthew G. Knepley 164497c42addSMatthew G. Knepley if (feRef[field]) { 1645e9d4ef1bSMatthew G. Knepley ierr = PetscDSGetDiscretization(prob, field, (PetscObject *) &feC);CHKERRQ(ierr); 16467c927364SMatthew G. Knepley ierr = PetscFEGetNumComponents(feC, &NcC);CHKERRQ(ierr); 16477c927364SMatthew G. Knepley ierr = PetscFEGetNumComponents(feRef[field], &NcF);CHKERRQ(ierr); 16487c927364SMatthew G. Knepley ierr = PetscFEGetDualSpace(feRef[field], &QF);CHKERRQ(ierr); 16497c927364SMatthew G. Knepley ierr = PetscDualSpaceGetDimension(QF, &fpdim);CHKERRQ(ierr); 16507c927364SMatthew G. Knepley ierr = PetscFEGetDualSpace(feC, &QC);CHKERRQ(ierr); 16517c927364SMatthew G. Knepley ierr = PetscDualSpaceGetDimension(QC, &cpdim);CHKERRQ(ierr); 165297c42addSMatthew G. Knepley } else { 165397c42addSMatthew G. Knepley ierr = PetscDSGetDiscretization(prob, field, (PetscObject *) &fvC);CHKERRQ(ierr); 165497c42addSMatthew G. Knepley ierr = PetscFVGetNumComponents(fvC, &NcC);CHKERRQ(ierr); 165597c42addSMatthew G. Knepley ierr = PetscFVGetNumComponents(fvRef[field], &NcF);CHKERRQ(ierr); 165697c42addSMatthew G. Knepley ierr = PetscFVGetDualSpace(fvRef[field], &QF);CHKERRQ(ierr); 165797c42addSMatthew G. Knepley ierr = PetscDualSpaceGetDimension(QF, &fpdim);CHKERRQ(ierr); 165897c42addSMatthew G. Knepley ierr = PetscFVGetDualSpace(fvC, &QC);CHKERRQ(ierr); 165997c42addSMatthew G. Knepley ierr = PetscDualSpaceGetDimension(QC, &cpdim);CHKERRQ(ierr); 166097c42addSMatthew G. Knepley } 166197c42addSMatthew G. Knepley if (NcF != NcC) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of components in fine space field %d does not match coarse field %d", NcF, NcC); 16627c927364SMatthew G. Knepley for (c = 0; c < cpdim; ++c) { 16637c927364SMatthew G. Knepley PetscQuadrature cfunc; 16647c927364SMatthew G. Knepley const PetscReal *cqpoints; 16657c927364SMatthew G. Knepley PetscInt NpC; 166697c42addSMatthew G. Knepley PetscBool found = PETSC_FALSE; 16677c927364SMatthew G. Knepley 16687c927364SMatthew G. Knepley ierr = PetscDualSpaceGetFunctional(QC, c, &cfunc);CHKERRQ(ierr); 16697c927364SMatthew G. Knepley ierr = PetscQuadratureGetData(cfunc, NULL, &NpC, &cqpoints, NULL);CHKERRQ(ierr); 167097c42addSMatthew G. Knepley if (NpC != 1 && feRef[field]) SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Do not know how to do injection for moments"); 16717c927364SMatthew G. Knepley for (f = 0; f < fpdim; ++f) { 16727c927364SMatthew G. Knepley PetscQuadrature ffunc; 16737c927364SMatthew G. Knepley const PetscReal *fqpoints; 16747c927364SMatthew G. Knepley PetscReal sum = 0.0; 16757c927364SMatthew G. Knepley PetscInt NpF, comp; 16767c927364SMatthew G. Knepley 16777c927364SMatthew G. Knepley ierr = PetscDualSpaceGetFunctional(QF, f, &ffunc);CHKERRQ(ierr); 16787c927364SMatthew G. Knepley ierr = PetscQuadratureGetData(ffunc, NULL, &NpF, &fqpoints, NULL);CHKERRQ(ierr); 16797c927364SMatthew G. Knepley if (NpC != NpF) continue; 16807c927364SMatthew G. Knepley for (d = 0; d < dim; ++d) sum += PetscAbsReal(cqpoints[d] - fqpoints[d]); 16817c927364SMatthew G. Knepley if (sum > 1.0e-9) continue; 16827c927364SMatthew G. Knepley for (comp = 0; comp < NcC; ++comp) { 16837c927364SMatthew G. Knepley cmap[(offsetC+c)*NcC+comp] = (offsetF+f)*NcF+comp; 16847c927364SMatthew G. Knepley } 168597c42addSMatthew G. Knepley found = PETSC_TRUE; 16867c927364SMatthew G. Knepley break; 16877c927364SMatthew G. Knepley } 168897c42addSMatthew G. Knepley if (!found) { 168997c42addSMatthew G. Knepley /* TODO We really want the average here, but some asshole put VecScatter in the interface */ 169097c42addSMatthew G. Knepley if (fvRef[field]) { 169197c42addSMatthew G. Knepley PetscInt comp; 169297c42addSMatthew G. Knepley for (comp = 0; comp < NcC; ++comp) { 169397c42addSMatthew G. Knepley cmap[(offsetC+c)*NcC+comp] = (offsetF+0)*NcF+comp; 169497c42addSMatthew G. Knepley } 169597c42addSMatthew G. Knepley } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Could not locate matching functional for injection"); 169697c42addSMatthew G. Knepley } 16977c927364SMatthew G. Knepley } 16987c927364SMatthew G. Knepley offsetC += cpdim*NcC; 16997c927364SMatthew G. Knepley offsetF += fpdim*NcF; 17007c927364SMatthew G. Knepley } 170197c42addSMatthew G. Knepley for (f = 0; f < Nf; ++f) {ierr = PetscFEDestroy(&feRef[f]);CHKERRQ(ierr);ierr = PetscFVDestroy(&fvRef[f]);CHKERRQ(ierr);} 170297c42addSMatthew G. Knepley ierr = PetscFree2(feRef,fvRef);CHKERRQ(ierr); 17037c927364SMatthew G. Knepley 17047c927364SMatthew G. Knepley ierr = DMGetGlobalVector(dmf, &fv);CHKERRQ(ierr); 17057c927364SMatthew G. Knepley ierr = DMGetGlobalVector(dmc, &cv);CHKERRQ(ierr); 17060bd915a7SMatthew G. Knepley ierr = VecGetOwnershipRange(cv, &startC, &endC);CHKERRQ(ierr); 17077c927364SMatthew G. Knepley ierr = PetscSectionGetConstrainedStorageSize(cglobalSection, &m);CHKERRQ(ierr); 17087c927364SMatthew G. Knepley ierr = PetscMalloc2(cTotDim,&cellCIndices,fTotDim,&cellFIndices);CHKERRQ(ierr); 1709aa7da3c4SMatthew G. Knepley ierr = PetscMalloc1(m,&cindices);CHKERRQ(ierr); 1710aa7da3c4SMatthew G. Knepley ierr = PetscMalloc1(m,&findices);CHKERRQ(ierr); 17117c927364SMatthew G. Knepley for (d = 0; d < m; ++d) cindices[d] = findices[d] = -1; 17127c927364SMatthew G. Knepley for (c = cStart; c < cEnd; ++c) { 17137c927364SMatthew G. Knepley ierr = DMPlexMatGetClosureIndicesRefined(dmf, fsection, fglobalSection, dmc, csection, cglobalSection, c, cellCIndices, cellFIndices);CHKERRQ(ierr); 17147c927364SMatthew G. Knepley for (d = 0; d < cTotDim; ++d) { 17150bd915a7SMatthew G. Knepley if ((cellCIndices[d] < startC) || (cellCIndices[d] >= endC)) continue; 17167c927364SMatthew G. Knepley if ((findices[cellCIndices[d]-startC] >= 0) && (findices[cellCIndices[d]-startC] != cellFIndices[cmap[d]])) SETERRQ3(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Coarse dof %d maps to both %d and %d", cindices[cellCIndices[d]-startC], findices[cellCIndices[d]-startC], cellFIndices[cmap[d]]); 17177c927364SMatthew G. Knepley cindices[cellCIndices[d]-startC] = cellCIndices[d]; 17187c927364SMatthew G. Knepley findices[cellCIndices[d]-startC] = cellFIndices[cmap[d]]; 17197c927364SMatthew G. Knepley } 17207c927364SMatthew G. Knepley } 17217c927364SMatthew G. Knepley ierr = PetscFree(cmap);CHKERRQ(ierr); 17227c927364SMatthew G. Knepley ierr = PetscFree2(cellCIndices,cellFIndices);CHKERRQ(ierr); 17237c927364SMatthew G. Knepley 17247c927364SMatthew G. Knepley ierr = ISCreateGeneral(PETSC_COMM_SELF, m, cindices, PETSC_OWN_POINTER, &cis);CHKERRQ(ierr); 17257c927364SMatthew G. Knepley ierr = ISCreateGeneral(PETSC_COMM_SELF, m, findices, PETSC_OWN_POINTER, &fis);CHKERRQ(ierr); 17267c927364SMatthew G. Knepley ierr = VecScatterCreate(cv, cis, fv, fis, sc);CHKERRQ(ierr); 17277c927364SMatthew G. Knepley ierr = ISDestroy(&cis);CHKERRQ(ierr); 17287c927364SMatthew G. Knepley ierr = ISDestroy(&fis);CHKERRQ(ierr); 17297c927364SMatthew G. Knepley ierr = DMRestoreGlobalVector(dmf, &fv);CHKERRQ(ierr); 17307c927364SMatthew G. Knepley ierr = DMRestoreGlobalVector(dmc, &cv);CHKERRQ(ierr); 173175a69067SMatthew G. Knepley ierr = PetscLogEventEnd(DMPLEX_InjectorFEM,dmc,dmf,0,0);CHKERRQ(ierr); 1732cb1e1211SMatthew G Knepley PetscFunctionReturn(0); 1733cb1e1211SMatthew G Knepley } 1734