1af0996ceSBarry Smith #include <petsc/private/dmpleximpl.h> /*I "petscdmplex.h" I*/ 2da97024aSMatthew G. Knepley #include <petscsf.h> 3cb1e1211SMatthew G Knepley 48e3a2eefSMatthew G. Knepley #include <petscblaslapack.h> 5e8f14785SLisandro Dalcin #include <petsc/private/hashsetij.h> 6af0996ceSBarry Smith #include <petsc/private/petscfeimpl.h> 7af0996ceSBarry Smith #include <petsc/private/petscfvimpl.h> 8a0845e3aSMatthew G. Knepley 95f0b18bfSMatthew G. Knepley PetscBool Clementcite = PETSC_FALSE; 105f0b18bfSMatthew G. Knepley const char ClementCitation[] = "@article{clement1975approximation,\n" 115f0b18bfSMatthew G. Knepley " title = {Approximation by finite element functions using local regularization},\n" 125f0b18bfSMatthew G. Knepley " author = {Philippe Cl{\\'e}ment},\n" 135f0b18bfSMatthew G. Knepley " journal = {Revue fran{\\c{c}}aise d'automatique, informatique, recherche op{\\'e}rationnelle. Analyse num{\\'e}rique},\n" 145f0b18bfSMatthew G. Knepley " volume = {9},\n" 155f0b18bfSMatthew G. Knepley " number = {R2},\n" 165f0b18bfSMatthew G. Knepley " pages = {77--84},\n" 175f0b18bfSMatthew G. Knepley " year = {1975}\n}\n"; 185f0b18bfSMatthew G. Knepley 19d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexConvertPlex(DM dm, DM *plex, PetscBool copy) 20d71ae5a4SJacob Faibussowitsch { 212f856554SMatthew G. Knepley PetscBool isPlex; 222f856554SMatthew G. Knepley 232f856554SMatthew G. Knepley PetscFunctionBegin; 249566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)dm, DMPLEX, &isPlex)); 252f856554SMatthew G. Knepley if (isPlex) { 262f856554SMatthew G. Knepley *plex = dm; 279566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)dm)); 282f856554SMatthew G. Knepley } else { 299566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)dm, "dm_plex", (PetscObject *)plex)); 302f856554SMatthew G. Knepley if (!*plex) { 319566063dSJacob Faibussowitsch PetscCall(DMConvert(dm, DMPLEX, plex)); 329566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)dm, "dm_plex", (PetscObject)*plex)); 33cbf8eb3cSStefano Zampini } else { 34cbf8eb3cSStefano Zampini PetscCall(PetscObjectReference((PetscObject)*plex)); 35cbf8eb3cSStefano Zampini } 362f856554SMatthew G. Knepley if (copy) { 372f856554SMatthew G. Knepley DMSubDomainHookLink link; 389a2a23afSMatthew G. Knepley 39*bb4b53efSMatthew G. Knepley PetscCall(DMCopyDS(dm, PETSC_DETERMINE, PETSC_DETERMINE, *plex)); 409566063dSJacob Faibussowitsch PetscCall(DMCopyAuxiliaryVec(dm, *plex)); 419a2a23afSMatthew G. Knepley /* Run the subdomain hook (this will copy the DMSNES/DMTS) */ 422f856554SMatthew G. Knepley for (link = dm->subdomainhook; link; link = link->next) { 439566063dSJacob Faibussowitsch if (link->ddhook) PetscCall((*link->ddhook)(dm, *plex, link->ctx)); 442f856554SMatthew G. Knepley } 452f856554SMatthew G. Knepley } 462f856554SMatthew G. Knepley } 473ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 482f856554SMatthew G. Knepley } 492f856554SMatthew G. Knepley 50d71ae5a4SJacob Faibussowitsch static PetscErrorCode PetscContainerUserDestroy_PetscFEGeom(void *ctx) 51d71ae5a4SJacob Faibussowitsch { 529b6f715bSMatthew G. Knepley PetscFEGeom *geom = (PetscFEGeom *)ctx; 539b6f715bSMatthew G. Knepley 549b6f715bSMatthew G. Knepley PetscFunctionBegin; 559566063dSJacob Faibussowitsch PetscCall(PetscFEGeomDestroy(&geom)); 563ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 579b6f715bSMatthew G. Knepley } 589b6f715bSMatthew G. Knepley 59d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexGetFEGeom(DMField coordField, IS pointIS, PetscQuadrature quad, PetscBool faceData, PetscFEGeom **geom) 60d71ae5a4SJacob Faibussowitsch { 619b6f715bSMatthew G. Knepley char composeStr[33] = {0}; 629b6f715bSMatthew G. Knepley PetscObjectId id; 639b6f715bSMatthew G. Knepley PetscContainer container; 649b6f715bSMatthew G. Knepley 659b6f715bSMatthew G. Knepley PetscFunctionBegin; 669566063dSJacob Faibussowitsch PetscCall(PetscObjectGetId((PetscObject)quad, &id)); 6763a3b9bcSJacob Faibussowitsch PetscCall(PetscSNPrintf(composeStr, 32, "DMPlexGetFEGeom_%" PetscInt64_FMT "\n", id)); 689566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)pointIS, composeStr, (PetscObject *)&container)); 699b6f715bSMatthew G. Knepley if (container) { 709566063dSJacob Faibussowitsch PetscCall(PetscContainerGetPointer(container, (void **)geom)); 719b6f715bSMatthew G. Knepley } else { 729566063dSJacob Faibussowitsch PetscCall(DMFieldCreateFEGeom(coordField, pointIS, quad, faceData, geom)); 739566063dSJacob Faibussowitsch PetscCall(PetscContainerCreate(PETSC_COMM_SELF, &container)); 749566063dSJacob Faibussowitsch PetscCall(PetscContainerSetPointer(container, (void *)*geom)); 759566063dSJacob Faibussowitsch PetscCall(PetscContainerSetUserDestroy(container, PetscContainerUserDestroy_PetscFEGeom)); 769566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)pointIS, composeStr, (PetscObject)container)); 779566063dSJacob Faibussowitsch PetscCall(PetscContainerDestroy(&container)); 789b6f715bSMatthew G. Knepley } 793ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 809b6f715bSMatthew G. Knepley } 819b6f715bSMatthew G. Knepley 82d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexRestoreFEGeom(DMField coordField, IS pointIS, PetscQuadrature quad, PetscBool faceData, PetscFEGeom **geom) 83d71ae5a4SJacob Faibussowitsch { 849b6f715bSMatthew G. Knepley PetscFunctionBegin; 859b6f715bSMatthew G. Knepley *geom = NULL; 863ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 879b6f715bSMatthew G. Knepley } 889b6f715bSMatthew G. Knepley 8946fa42a0SMatthew G. Knepley /*@ 9046fa42a0SMatthew G. Knepley DMPlexGetScale - Get the scale for the specified fundamental unit 9146fa42a0SMatthew G. Knepley 9220f4b53cSBarry Smith Not Collective 9346fa42a0SMatthew G. Knepley 944165533cSJose E. Roman Input Parameters: 95a1cb98faSBarry Smith + dm - the `DM` 9646fa42a0SMatthew G. Knepley - unit - The SI unit 9746fa42a0SMatthew G. Knepley 984165533cSJose E. Roman Output Parameter: 9946fa42a0SMatthew G. Knepley . scale - The value used to scale all quantities with this unit 10046fa42a0SMatthew G. Knepley 10146fa42a0SMatthew G. Knepley Level: advanced 10246fa42a0SMatthew G. Knepley 1031cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexSetScale()`, `PetscUnit` 10446fa42a0SMatthew G. Knepley @*/ 105d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexGetScale(DM dm, PetscUnit unit, PetscReal *scale) 106d71ae5a4SJacob Faibussowitsch { 107cb1e1211SMatthew G Knepley DM_Plex *mesh = (DM_Plex *)dm->data; 108cb1e1211SMatthew G Knepley 109cb1e1211SMatthew G Knepley PetscFunctionBegin; 110cb1e1211SMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 1114f572ea9SToby Isaac PetscAssertPointer(scale, 3); 112cb1e1211SMatthew G Knepley *scale = mesh->scale[unit]; 1133ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 114cb1e1211SMatthew G Knepley } 115cb1e1211SMatthew G Knepley 11646fa42a0SMatthew G. Knepley /*@ 11746fa42a0SMatthew G. Knepley DMPlexSetScale - Set the scale for the specified fundamental unit 11846fa42a0SMatthew G. Knepley 11920f4b53cSBarry Smith Not Collective 12046fa42a0SMatthew G. Knepley 1214165533cSJose E. Roman Input Parameters: 122a1cb98faSBarry Smith + dm - the `DM` 12346fa42a0SMatthew G. Knepley . unit - The SI unit 12446fa42a0SMatthew G. Knepley - scale - The value used to scale all quantities with this unit 12546fa42a0SMatthew G. Knepley 12646fa42a0SMatthew G. Knepley Level: advanced 12746fa42a0SMatthew G. Knepley 1281cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexGetScale()`, `PetscUnit` 12946fa42a0SMatthew G. Knepley @*/ 130d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexSetScale(DM dm, PetscUnit unit, PetscReal scale) 131d71ae5a4SJacob Faibussowitsch { 132cb1e1211SMatthew G Knepley DM_Plex *mesh = (DM_Plex *)dm->data; 133cb1e1211SMatthew G Knepley 134cb1e1211SMatthew G Knepley PetscFunctionBegin; 135cb1e1211SMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 136cb1e1211SMatthew G Knepley mesh->scale[unit] = scale; 1373ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 138cb1e1211SMatthew G Knepley } 139cb1e1211SMatthew G Knepley 140d2b2dc1eSMatthew G. Knepley PetscErrorCode DMPlexGetUseCeed_Plex(DM dm, PetscBool *useCeed) 141d2b2dc1eSMatthew G. Knepley { 142d2b2dc1eSMatthew G. Knepley DM_Plex *mesh = (DM_Plex *)dm->data; 143d2b2dc1eSMatthew G. Knepley 144d2b2dc1eSMatthew G. Knepley PetscFunctionBegin; 145d2b2dc1eSMatthew G. Knepley *useCeed = mesh->useCeed; 146d2b2dc1eSMatthew G. Knepley PetscFunctionReturn(PETSC_SUCCESS); 147d2b2dc1eSMatthew G. Knepley } 148d2b2dc1eSMatthew G. Knepley PetscErrorCode DMPlexSetUseCeed_Plex(DM dm, PetscBool useCeed) 149d2b2dc1eSMatthew G. Knepley { 150d2b2dc1eSMatthew G. Knepley DM_Plex *mesh = (DM_Plex *)dm->data; 151d2b2dc1eSMatthew G. Knepley 152d2b2dc1eSMatthew G. Knepley PetscFunctionBegin; 153d2b2dc1eSMatthew G. Knepley mesh->useCeed = useCeed; 154d2b2dc1eSMatthew G. Knepley PetscFunctionReturn(PETSC_SUCCESS); 155d2b2dc1eSMatthew G. Knepley } 156d2b2dc1eSMatthew G. Knepley 157d2b2dc1eSMatthew G. Knepley /*@ 158d2b2dc1eSMatthew G. Knepley DMPlexGetUseCeed - Get flag for using the LibCEED backend 159d2b2dc1eSMatthew G. Knepley 160d2b2dc1eSMatthew G. Knepley Not collective 161d2b2dc1eSMatthew G. Knepley 162d2b2dc1eSMatthew G. Knepley Input Parameter: 163d2b2dc1eSMatthew G. Knepley . dm - The `DM` 164d2b2dc1eSMatthew G. Knepley 165d2b2dc1eSMatthew G. Knepley Output Parameter: 166d2b2dc1eSMatthew G. Knepley . useCeed - The flag 167d2b2dc1eSMatthew G. Knepley 168d2b2dc1eSMatthew G. Knepley Level: intermediate 169d2b2dc1eSMatthew G. Knepley 170d2b2dc1eSMatthew G. Knepley .seealso: `DMPlexSetUseCeed()` 171d2b2dc1eSMatthew G. Knepley @*/ 172d2b2dc1eSMatthew G. Knepley PetscErrorCode DMPlexGetUseCeed(DM dm, PetscBool *useCeed) 173d2b2dc1eSMatthew G. Knepley { 174d2b2dc1eSMatthew G. Knepley PetscFunctionBegin; 175d2b2dc1eSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 176d2b2dc1eSMatthew G. Knepley PetscAssertPointer(useCeed, 2); 177d2b2dc1eSMatthew G. Knepley *useCeed = PETSC_FALSE; 178d2b2dc1eSMatthew G. Knepley PetscTryMethod(dm, "DMPlexGetUseCeed_C", (DM, PetscBool *), (dm, useCeed)); 179d2b2dc1eSMatthew G. Knepley PetscFunctionReturn(PETSC_SUCCESS); 180d2b2dc1eSMatthew G. Knepley } 181d2b2dc1eSMatthew G. Knepley 182d2b2dc1eSMatthew G. Knepley /*@ 183d2b2dc1eSMatthew G. Knepley DMPlexSetUseCeed - Set flag for using the LibCEED backend 184d2b2dc1eSMatthew G. Knepley 185d2b2dc1eSMatthew G. Knepley Not collective 186d2b2dc1eSMatthew G. Knepley 187d2b2dc1eSMatthew G. Knepley Input Parameters: 188d2b2dc1eSMatthew G. Knepley + dm - The `DM` 189d2b2dc1eSMatthew G. Knepley - useCeed - The flag 190d2b2dc1eSMatthew G. Knepley 191d2b2dc1eSMatthew G. Knepley Level: intermediate 192d2b2dc1eSMatthew G. Knepley 193fe8e7dddSPierre Jolivet .seealso: `DMPlexGetUseCeed()` 194d2b2dc1eSMatthew G. Knepley @*/ 195d2b2dc1eSMatthew G. Knepley PetscErrorCode DMPlexSetUseCeed(DM dm, PetscBool useCeed) 196d2b2dc1eSMatthew G. Knepley { 197d2b2dc1eSMatthew G. Knepley PetscFunctionBegin; 198d2b2dc1eSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 199d2b2dc1eSMatthew G. Knepley PetscValidLogicalCollectiveBool(dm, useCeed, 2); 200d2b2dc1eSMatthew G. Knepley PetscUseMethod(dm, "DMPlexSetUseCeed_C", (DM, PetscBool), (dm, useCeed)); 201d2b2dc1eSMatthew G. Knepley PetscFunctionReturn(PETSC_SUCCESS); 202d2b2dc1eSMatthew G. Knepley } 203d2b2dc1eSMatthew G. Knepley 204e8e188d2SZach Atkins /*@ 205e8e188d2SZach Atkins DMPlexGetUseMatClosurePermutation - Get flag for using a closure permutation for matrix insertion 206e8e188d2SZach Atkins 207e8e188d2SZach Atkins Not collective 208e8e188d2SZach Atkins 209e8e188d2SZach Atkins Input Parameter: 210e8e188d2SZach Atkins . dm - The `DM` 211e8e188d2SZach Atkins 212e8e188d2SZach Atkins Output Parameter: 213e8e188d2SZach Atkins . useClPerm - The flag 214e8e188d2SZach Atkins 215e8e188d2SZach Atkins Level: intermediate 216e8e188d2SZach Atkins 217e8e188d2SZach Atkins .seealso: `DMPlexSetUseMatClosurePermutation()` 218e8e188d2SZach Atkins @*/ 219e8e188d2SZach Atkins PetscErrorCode DMPlexGetUseMatClosurePermutation(DM dm, PetscBool *useClPerm) 220e8e188d2SZach Atkins { 221e8e188d2SZach Atkins DM_Plex *mesh = (DM_Plex *)dm->data; 222e8e188d2SZach Atkins 223e8e188d2SZach Atkins PetscFunctionBegin; 224e8e188d2SZach Atkins PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 225e8e188d2SZach Atkins PetscAssertPointer(useClPerm, 2); 226e8e188d2SZach Atkins *useClPerm = mesh->useMatClPerm; 227e8e188d2SZach Atkins PetscFunctionReturn(PETSC_SUCCESS); 228e8e188d2SZach Atkins } 229e8e188d2SZach Atkins 230e8e188d2SZach Atkins /*@ 231e8e188d2SZach Atkins DMPlexSetUseMatClosurePermutation - Set flag for using a closure permutation for matrix insertion 232e8e188d2SZach Atkins 233e8e188d2SZach Atkins Not collective 234e8e188d2SZach Atkins 235e8e188d2SZach Atkins Input Parameters: 236e8e188d2SZach Atkins + dm - The `DM` 237e8e188d2SZach Atkins - useClPerm - The flag 238e8e188d2SZach Atkins 239e8e188d2SZach Atkins Level: intermediate 240e8e188d2SZach Atkins 241e8e188d2SZach Atkins .seealso: `DMPlexGetUseMatClosurePermutation()` 242e8e188d2SZach Atkins @*/ 243e8e188d2SZach Atkins PetscErrorCode DMPlexSetUseMatClosurePermutation(DM dm, PetscBool useClPerm) 244e8e188d2SZach Atkins { 245e8e188d2SZach Atkins DM_Plex *mesh = (DM_Plex *)dm->data; 246e8e188d2SZach Atkins 247e8e188d2SZach Atkins PetscFunctionBegin; 248e8e188d2SZach Atkins PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 249e8e188d2SZach Atkins PetscValidLogicalCollectiveBool(dm, useClPerm, 2); 250e8e188d2SZach Atkins mesh->useMatClPerm = useClPerm; 251e8e188d2SZach Atkins PetscFunctionReturn(PETSC_SUCCESS); 252e8e188d2SZach Atkins } 253e8e188d2SZach Atkins 254d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexProjectRigidBody_Private(PetscInt dim, PetscReal t, const PetscReal X[], PetscInt Nc, PetscScalar *mode, void *ctx) 255d71ae5a4SJacob Faibussowitsch { 2569371c9d4SSatish Balay const PetscInt eps[3][3][3] = { 2579371c9d4SSatish Balay {{0, 0, 0}, {0, 0, 1}, {0, -1, 0}}, 2589371c9d4SSatish Balay {{0, 0, -1}, {0, 0, 0}, {1, 0, 0} }, 2599371c9d4SSatish Balay {{0, 1, 0}, {-1, 0, 0}, {0, 0, 0} } 2609371c9d4SSatish Balay }; 261026175e5SToby Isaac PetscInt *ctxInt = (PetscInt *)ctx; 262ad917190SMatthew G. Knepley PetscInt dim2 = ctxInt[0]; 263026175e5SToby Isaac PetscInt d = ctxInt[1]; 264026175e5SToby Isaac PetscInt i, j, k = dim > 2 ? d - dim : d; 265026175e5SToby Isaac 266ad917190SMatthew G. Knepley PetscFunctionBegin; 26763a3b9bcSJacob Faibussowitsch PetscCheck(dim == dim2, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Input dimension %" PetscInt_FMT " does not match context dimension %" PetscInt_FMT, dim, dim2); 268026175e5SToby Isaac for (i = 0; i < dim; i++) mode[i] = 0.; 269026175e5SToby Isaac if (d < dim) { 27012adca46SMatthew G. Knepley mode[d] = 1.; /* Translation along axis d */ 271ad917190SMatthew G. Knepley } else { 272026175e5SToby Isaac for (i = 0; i < dim; i++) { 2739371c9d4SSatish Balay for (j = 0; j < dim; j++) { mode[j] += eps[i][j][k] * X[i]; /* Rotation about axis d */ } 274026175e5SToby Isaac } 275026175e5SToby Isaac } 2763ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 277026175e5SToby Isaac } 278026175e5SToby Isaac 279cc4e42d9SMartin Diehl /*@ 28012adca46SMatthew G. Knepley DMPlexCreateRigidBody - For the default global section, create rigid body modes by function space interpolation 281cb1e1211SMatthew G Knepley 28220f4b53cSBarry Smith Collective 283cb1e1211SMatthew G Knepley 2844165533cSJose E. Roman Input Parameters: 285a1cb98faSBarry Smith + dm - the `DM` 28656cf3b9cSMatthew G. Knepley - field - The field number for the rigid body space, or 0 for the default 287cb1e1211SMatthew G Knepley 2884165533cSJose E. Roman Output Parameter: 289cb1e1211SMatthew G Knepley . sp - the null space 290cb1e1211SMatthew G Knepley 291cb1e1211SMatthew G Knepley Level: advanced 292cb1e1211SMatthew G Knepley 293a1cb98faSBarry Smith Note: 294a1cb98faSBarry Smith This is necessary to provide a suitable coarse space for algebraic multigrid 295a1cb98faSBarry Smith 2961cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `MatNullSpaceCreate()`, `PCGAMG` 297cb1e1211SMatthew G Knepley @*/ 298d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexCreateRigidBody(DM dm, PetscInt field, MatNullSpace *sp) 299d71ae5a4SJacob Faibussowitsch { 30056cf3b9cSMatthew G. Knepley PetscErrorCode (**func)(PetscInt, PetscReal, const PetscReal *, PetscInt, PetscScalar *, void *); 301cb1e1211SMatthew G Knepley MPI_Comm comm; 302026175e5SToby Isaac Vec mode[6]; 303026175e5SToby Isaac PetscSection section, globalSection; 30456cf3b9cSMatthew G. Knepley PetscInt dim, dimEmbed, Nf, n, m, mmin, d, i, j; 305db14aad5SMatthew G. Knepley void **ctxs; 306cb1e1211SMatthew G Knepley 307cb1e1211SMatthew G Knepley PetscFunctionBegin; 3089566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)dm, &comm)); 3099566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 3109566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDim(dm, &dimEmbed)); 3119566063dSJacob Faibussowitsch PetscCall(DMGetNumFields(dm, &Nf)); 31263a3b9bcSJacob Faibussowitsch PetscCheck(!Nf || !(field < 0 || field >= Nf), comm, PETSC_ERR_ARG_OUTOFRANGE, "Field %" PetscInt_FMT " is not in [0, %" PetscInt_FMT ")", field, Nf); 31356cf3b9cSMatthew G. Knepley if (dim == 1 && Nf < 2) { 3149566063dSJacob Faibussowitsch PetscCall(MatNullSpaceCreate(comm, PETSC_TRUE, 0, NULL, sp)); 3153ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 316cb1e1211SMatthew G Knepley } 3179566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, §ion)); 3189566063dSJacob Faibussowitsch PetscCall(DMGetGlobalSection(dm, &globalSection)); 3199566063dSJacob Faibussowitsch PetscCall(PetscSectionGetConstrainedStorageSize(globalSection, &n)); 320db14aad5SMatthew G. Knepley PetscCall(PetscCalloc2(Nf, &func, Nf, &ctxs)); 321b247467aSMatthew G. Knepley m = (dim * (dim + 1)) / 2; 3229566063dSJacob Faibussowitsch PetscCall(VecCreate(comm, &mode[0])); 3239566063dSJacob Faibussowitsch PetscCall(VecSetType(mode[0], dm->vectype)); 3249566063dSJacob Faibussowitsch PetscCall(VecSetSizes(mode[0], n, PETSC_DETERMINE)); 3259566063dSJacob Faibussowitsch PetscCall(VecSetUp(mode[0])); 3269566063dSJacob Faibussowitsch PetscCall(VecGetSize(mode[0], &n)); 327b247467aSMatthew G. Knepley mmin = PetscMin(m, n); 32856cf3b9cSMatthew G. Knepley func[field] = DMPlexProjectRigidBody_Private; 3299566063dSJacob Faibussowitsch for (i = 1; i < m; ++i) PetscCall(VecDuplicate(mode[0], &mode[i])); 330026175e5SToby Isaac for (d = 0; d < m; d++) { 331330485fdSToby Isaac PetscInt ctx[2]; 332cb1e1211SMatthew G Knepley 333db14aad5SMatthew G. Knepley ctxs[field] = (void *)(&ctx[0]); 3349d8fbdeaSMatthew G. Knepley ctx[0] = dimEmbed; 335330485fdSToby Isaac ctx[1] = d; 336db14aad5SMatthew G. Knepley PetscCall(DMProjectFunction(dm, 0.0, func, ctxs, INSERT_VALUES, mode[d])); 337cb1e1211SMatthew G Knepley } 3383b2202bfSJacob Faibussowitsch /* Orthonormalize system */ 339b50a2c0aSJacob Faibussowitsch for (i = 0; i < mmin; ++i) { 340b77f2eeeSJacob Faibussowitsch PetscScalar dots[6]; 341b50a2c0aSJacob Faibussowitsch 3429566063dSJacob Faibussowitsch PetscCall(VecNormalize(mode[i], NULL)); 3439566063dSJacob Faibussowitsch PetscCall(VecMDot(mode[i], mmin - i - 1, mode + i + 1, dots + i + 1)); 344b50a2c0aSJacob Faibussowitsch for (j = i + 1; j < mmin; ++j) { 345b77f2eeeSJacob Faibussowitsch dots[j] *= -1.0; 3469566063dSJacob Faibussowitsch PetscCall(VecAXPY(mode[j], dots[j], mode[i])); 347b50a2c0aSJacob Faibussowitsch } 348cb1e1211SMatthew G Knepley } 3499566063dSJacob Faibussowitsch PetscCall(MatNullSpaceCreate(comm, PETSC_FALSE, mmin, mode, sp)); 3509566063dSJacob Faibussowitsch for (i = 0; i < m; ++i) PetscCall(VecDestroy(&mode[i])); 351db14aad5SMatthew G. Knepley PetscCall(PetscFree2(func, ctxs)); 3523ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 353cb1e1211SMatthew G Knepley } 354cb1e1211SMatthew G Knepley 355cc4e42d9SMartin Diehl /*@ 35612adca46SMatthew G. Knepley DMPlexCreateRigidBodies - For the default global section, create rigid body modes by function space interpolation 35712adca46SMatthew G. Knepley 35820f4b53cSBarry Smith Collective 35912adca46SMatthew G. Knepley 3604165533cSJose E. Roman Input Parameters: 361a1cb98faSBarry Smith + dm - the `DM` 36212adca46SMatthew G. Knepley . nb - The number of bodies 363a1cb98faSBarry Smith . label - The `DMLabel` marking each domain 36412adca46SMatthew G. Knepley . nids - The number of ids per body 36512adca46SMatthew G. Knepley - ids - An array of the label ids in sequence for each domain 36612adca46SMatthew G. Knepley 3674165533cSJose E. Roman Output Parameter: 36812adca46SMatthew G. Knepley . sp - the null space 36912adca46SMatthew G. Knepley 37012adca46SMatthew G. Knepley Level: advanced 37112adca46SMatthew G. Knepley 372a1cb98faSBarry Smith Note: 373a1cb98faSBarry Smith This is necessary to provide a suitable coarse space for algebraic multigrid 374a1cb98faSBarry Smith 3751cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `MatNullSpaceCreate()` 37612adca46SMatthew G. Knepley @*/ 377d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexCreateRigidBodies(DM dm, PetscInt nb, DMLabel label, const PetscInt nids[], const PetscInt ids[], MatNullSpace *sp) 378d71ae5a4SJacob Faibussowitsch { 37912adca46SMatthew G. Knepley MPI_Comm comm; 38012adca46SMatthew G. Knepley PetscSection section, globalSection; 38112adca46SMatthew G. Knepley Vec *mode; 38212adca46SMatthew G. Knepley PetscScalar *dots; 38312adca46SMatthew G. Knepley PetscInt dim, dimEmbed, n, m, b, d, i, j, off; 38412adca46SMatthew G. Knepley 38512adca46SMatthew G. Knepley PetscFunctionBegin; 3869566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)dm, &comm)); 3879566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 3889566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDim(dm, &dimEmbed)); 3899566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, §ion)); 3909566063dSJacob Faibussowitsch PetscCall(DMGetGlobalSection(dm, &globalSection)); 3919566063dSJacob Faibussowitsch PetscCall(PetscSectionGetConstrainedStorageSize(globalSection, &n)); 39212adca46SMatthew G. Knepley m = nb * (dim * (dim + 1)) / 2; 3939566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(m, &mode, m, &dots)); 3949566063dSJacob Faibussowitsch PetscCall(VecCreate(comm, &mode[0])); 3959566063dSJacob Faibussowitsch PetscCall(VecSetSizes(mode[0], n, PETSC_DETERMINE)); 3969566063dSJacob Faibussowitsch PetscCall(VecSetUp(mode[0])); 3979566063dSJacob Faibussowitsch for (i = 1; i < m; ++i) PetscCall(VecDuplicate(mode[0], &mode[i])); 39812adca46SMatthew G. Knepley for (b = 0, off = 0; b < nb; ++b) { 39912adca46SMatthew G. Knepley for (d = 0; d < m / nb; ++d) { 40012adca46SMatthew G. Knepley PetscInt ctx[2]; 40112adca46SMatthew G. Knepley PetscErrorCode (*func)(PetscInt, PetscReal, const PetscReal *, PetscInt, PetscScalar *, void *) = DMPlexProjectRigidBody_Private; 40212adca46SMatthew G. Knepley void *voidctx = (void *)(&ctx[0]); 40312adca46SMatthew G. Knepley 40412adca46SMatthew G. Knepley ctx[0] = dimEmbed; 40512adca46SMatthew G. Knepley ctx[1] = d; 4069566063dSJacob Faibussowitsch PetscCall(DMProjectFunctionLabel(dm, 0.0, label, nids[b], &ids[off], 0, NULL, &func, &voidctx, INSERT_VALUES, mode[d])); 40712adca46SMatthew G. Knepley off += nids[b]; 40812adca46SMatthew G. Knepley } 40912adca46SMatthew G. Knepley } 4103b2202bfSJacob Faibussowitsch /* Orthonormalize system */ 411606c1a1cSJacob Faibussowitsch for (i = 0; i < m; ++i) { 412b77f2eeeSJacob Faibussowitsch PetscScalar dots[6]; 4135a0e29b9SJacob Faibussowitsch 4149566063dSJacob Faibussowitsch PetscCall(VecNormalize(mode[i], NULL)); 4159566063dSJacob Faibussowitsch PetscCall(VecMDot(mode[i], m - i - 1, mode + i + 1, dots + i + 1)); 4165a0e29b9SJacob Faibussowitsch for (j = i + 1; j < m; ++j) { 417b77f2eeeSJacob Faibussowitsch dots[j] *= -1.0; 4189566063dSJacob Faibussowitsch PetscCall(VecAXPY(mode[j], dots[j], mode[i])); 4195a0e29b9SJacob Faibussowitsch } 42012adca46SMatthew G. Knepley } 4219566063dSJacob Faibussowitsch PetscCall(MatNullSpaceCreate(comm, PETSC_FALSE, m, mode, sp)); 4229566063dSJacob Faibussowitsch for (i = 0; i < m; ++i) PetscCall(VecDestroy(&mode[i])); 4239566063dSJacob Faibussowitsch PetscCall(PetscFree2(mode, dots)); 4243ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 42512adca46SMatthew G. Knepley } 42612adca46SMatthew G. Knepley 427b29cfa1cSToby Isaac /*@ 428b29cfa1cSToby Isaac DMPlexSetMaxProjectionHeight - In DMPlexProjectXXXLocal() functions, the projected values of a basis function's dofs 429b29cfa1cSToby Isaac are computed by associating the basis function with one of the mesh points in its transitively-closed support, and 430a4e35b19SJacob Faibussowitsch evaluating the dual space basis of that point. 431b29cfa1cSToby Isaac 432b29cfa1cSToby Isaac Input Parameters: 433a1cb98faSBarry Smith + dm - the `DMPLEX` object 434b29cfa1cSToby Isaac - height - the maximum projection height >= 0 435b29cfa1cSToby Isaac 436b29cfa1cSToby Isaac Level: advanced 437b29cfa1cSToby Isaac 438a4e35b19SJacob Faibussowitsch Notes: 439a4e35b19SJacob Faibussowitsch A basis function is associated with the point in its transitively-closed support whose mesh 440a4e35b19SJacob Faibussowitsch height is highest (w.r.t. DAG height), but not greater than the maximum projection height, 441a4e35b19SJacob Faibussowitsch which is set with this function. By default, the maximum projection height is zero, which 442a4e35b19SJacob Faibussowitsch means that only mesh cells are used to project basis functions. A height of one, for 443a4e35b19SJacob Faibussowitsch example, evaluates a cell-interior basis functions using its cells dual space basis, but all 444a4e35b19SJacob Faibussowitsch other basis functions with the dual space basis of a face. 445a4e35b19SJacob Faibussowitsch 4461cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexGetMaxProjectionHeight()`, `DMProjectFunctionLocal()`, `DMProjectFunctionLabelLocal()` 447b29cfa1cSToby Isaac @*/ 448d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexSetMaxProjectionHeight(DM dm, PetscInt height) 449d71ae5a4SJacob Faibussowitsch { 450b29cfa1cSToby Isaac DM_Plex *plex = (DM_Plex *)dm->data; 451b29cfa1cSToby Isaac 452b29cfa1cSToby Isaac PetscFunctionBegin; 453b29cfa1cSToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 454b29cfa1cSToby Isaac plex->maxProjectionHeight = height; 4553ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 456b29cfa1cSToby Isaac } 457b29cfa1cSToby Isaac 458b29cfa1cSToby Isaac /*@ 459b29cfa1cSToby Isaac DMPlexGetMaxProjectionHeight - Get the maximum height (w.r.t. DAG) of mesh points used to evaluate dual bases in 460b29cfa1cSToby Isaac DMPlexProjectXXXLocal() functions. 461b29cfa1cSToby Isaac 4622fe279fdSBarry Smith Input Parameter: 463a1cb98faSBarry Smith . dm - the `DMPLEX` object 464b29cfa1cSToby Isaac 4652fe279fdSBarry Smith Output Parameter: 466b29cfa1cSToby Isaac . height - the maximum projection height 467b29cfa1cSToby Isaac 468b29cfa1cSToby Isaac Level: intermediate 469b29cfa1cSToby Isaac 4701cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexSetMaxProjectionHeight()`, `DMProjectFunctionLocal()`, `DMProjectFunctionLabelLocal()` 471b29cfa1cSToby Isaac @*/ 472d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexGetMaxProjectionHeight(DM dm, PetscInt *height) 473d71ae5a4SJacob Faibussowitsch { 474b29cfa1cSToby Isaac DM_Plex *plex = (DM_Plex *)dm->data; 475b29cfa1cSToby Isaac 476b29cfa1cSToby Isaac PetscFunctionBegin; 477b29cfa1cSToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 478b29cfa1cSToby Isaac *height = plex->maxProjectionHeight; 4793ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 480b29cfa1cSToby Isaac } 481b29cfa1cSToby Isaac 482ca3d3a14SMatthew G. Knepley typedef struct { 483ca3d3a14SMatthew G. Knepley PetscReal alpha; /* The first Euler angle, and in 2D the only one */ 484ca3d3a14SMatthew G. Knepley PetscReal beta; /* The second Euler angle */ 485ca3d3a14SMatthew G. Knepley PetscReal gamma; /* The third Euler angle */ 486ca3d3a14SMatthew G. Knepley PetscInt dim; /* The dimension of R */ 487ca3d3a14SMatthew G. Knepley PetscScalar *R; /* The rotation matrix, transforming a vector in the local basis to the global basis */ 488ca3d3a14SMatthew G. Knepley PetscScalar *RT; /* The transposed rotation matrix, transforming a vector in the global basis to the local basis */ 489ca3d3a14SMatthew G. Knepley } RotCtx; 490ca3d3a14SMatthew G. Knepley 491ca3d3a14SMatthew G. Knepley /* 492ca3d3a14SMatthew G. Knepley Note: Following https://en.wikipedia.org/wiki/Euler_angles, we will specify Euler angles by extrinsic rotations, meaning that 493ca3d3a14SMatthew G. Knepley we rotate with respect to a fixed initial coordinate system, the local basis (x-y-z). The global basis (X-Y-Z) is reached as follows: 494ca3d3a14SMatthew G. Knepley $ The XYZ system rotates about the z axis by alpha. The X axis is now at angle alpha with respect to the x axis. 495ca3d3a14SMatthew G. Knepley $ The XYZ system rotates again about the x axis by beta. The Z axis is now at angle beta with respect to the z axis. 496ca3d3a14SMatthew G. Knepley $ The XYZ system rotates a third time about the z axis by gamma. 497ca3d3a14SMatthew G. Knepley */ 498d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexBasisTransformSetUp_Rotation_Internal(DM dm, void *ctx) 499d71ae5a4SJacob Faibussowitsch { 500ca3d3a14SMatthew G. Knepley RotCtx *rc = (RotCtx *)ctx; 501ca3d3a14SMatthew G. Knepley PetscInt dim = rc->dim; 502ca3d3a14SMatthew G. Knepley PetscReal c1, s1, c2, s2, c3, s3; 503ca3d3a14SMatthew G. Knepley 504ca3d3a14SMatthew G. Knepley PetscFunctionBegin; 5059566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(PetscSqr(dim), &rc->R, PetscSqr(dim), &rc->RT)); 506ca3d3a14SMatthew G. Knepley switch (dim) { 507ca3d3a14SMatthew G. Knepley case 2: 5089371c9d4SSatish Balay c1 = PetscCosReal(rc->alpha); 5099371c9d4SSatish Balay s1 = PetscSinReal(rc->alpha); 5109371c9d4SSatish Balay rc->R[0] = c1; 5119371c9d4SSatish Balay rc->R[1] = s1; 5129371c9d4SSatish Balay rc->R[2] = -s1; 5139371c9d4SSatish Balay rc->R[3] = c1; 5149566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(rc->RT, rc->R, PetscSqr(dim))); 515b458e8f1SJose E. Roman DMPlex_Transpose2D_Internal(rc->RT); 516ca3d3a14SMatthew G. Knepley break; 517ca3d3a14SMatthew G. Knepley case 3: 5189371c9d4SSatish Balay c1 = PetscCosReal(rc->alpha); 5199371c9d4SSatish Balay s1 = PetscSinReal(rc->alpha); 5209371c9d4SSatish Balay c2 = PetscCosReal(rc->beta); 5219371c9d4SSatish Balay s2 = PetscSinReal(rc->beta); 5229371c9d4SSatish Balay c3 = PetscCosReal(rc->gamma); 5239371c9d4SSatish Balay s3 = PetscSinReal(rc->gamma); 5249371c9d4SSatish Balay rc->R[0] = c1 * c3 - c2 * s1 * s3; 5259371c9d4SSatish Balay rc->R[1] = c3 * s1 + c1 * c2 * s3; 5269371c9d4SSatish Balay rc->R[2] = s2 * s3; 5279371c9d4SSatish Balay rc->R[3] = -c1 * s3 - c2 * c3 * s1; 5289371c9d4SSatish Balay rc->R[4] = c1 * c2 * c3 - s1 * s3; 5299371c9d4SSatish Balay rc->R[5] = c3 * s2; 5309371c9d4SSatish Balay rc->R[6] = s1 * s2; 5319371c9d4SSatish Balay rc->R[7] = -c1 * s2; 5329371c9d4SSatish Balay rc->R[8] = c2; 5339566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(rc->RT, rc->R, PetscSqr(dim))); 534b458e8f1SJose E. Roman DMPlex_Transpose3D_Internal(rc->RT); 535ca3d3a14SMatthew G. Knepley break; 536d71ae5a4SJacob Faibussowitsch default: 537d71ae5a4SJacob Faibussowitsch SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Dimension %" PetscInt_FMT " not supported", dim); 538ca3d3a14SMatthew G. Knepley } 5393ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 540ca3d3a14SMatthew G. Knepley } 541ca3d3a14SMatthew G. Knepley 542d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexBasisTransformDestroy_Rotation_Internal(DM dm, void *ctx) 543d71ae5a4SJacob Faibussowitsch { 544ca3d3a14SMatthew G. Knepley RotCtx *rc = (RotCtx *)ctx; 545ca3d3a14SMatthew G. Knepley 546ca3d3a14SMatthew G. Knepley PetscFunctionBegin; 5479566063dSJacob Faibussowitsch PetscCall(PetscFree2(rc->R, rc->RT)); 5489566063dSJacob Faibussowitsch PetscCall(PetscFree(rc)); 5493ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 550ca3d3a14SMatthew G. Knepley } 551ca3d3a14SMatthew G. Knepley 552d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexBasisTransformGetMatrix_Rotation_Internal(DM dm, const PetscReal x[], PetscBool l2g, const PetscScalar **A, void *ctx) 553d71ae5a4SJacob Faibussowitsch { 554ca3d3a14SMatthew G. Knepley RotCtx *rc = (RotCtx *)ctx; 555ca3d3a14SMatthew G. Knepley 556ca3d3a14SMatthew G. Knepley PetscFunctionBeginHot; 5574f572ea9SToby Isaac PetscAssertPointer(ctx, 5); 5589371c9d4SSatish Balay if (l2g) { 5599371c9d4SSatish Balay *A = rc->R; 5609371c9d4SSatish Balay } else { 5619371c9d4SSatish Balay *A = rc->RT; 5629371c9d4SSatish Balay } 5633ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 564ca3d3a14SMatthew G. Knepley } 565ca3d3a14SMatthew G. Knepley 566d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexBasisTransformApplyReal_Internal(DM dm, const PetscReal x[], PetscBool l2g, PetscInt dim, const PetscReal *y, PetscReal *z, void *ctx) 567d71ae5a4SJacob Faibussowitsch { 568ec277c0fSMatthew G. Knepley PetscFunctionBegin; 569ab6a9622SMatthew G. Knepley #if defined(PETSC_USE_COMPLEX) 570ab6a9622SMatthew G. Knepley switch (dim) { 5719371c9d4SSatish Balay case 2: { 57227104ee2SJacob Faibussowitsch PetscScalar yt[2] = {y[0], y[1]}, zt[2] = {0.0, 0.0}; 573ab6a9622SMatthew G. Knepley 5749566063dSJacob Faibussowitsch PetscCall(DMPlexBasisTransformApply_Internal(dm, x, l2g, dim, yt, zt, ctx)); 5759371c9d4SSatish Balay z[0] = PetscRealPart(zt[0]); 5769371c9d4SSatish Balay z[1] = PetscRealPart(zt[1]); 5779371c9d4SSatish Balay } break; 5789371c9d4SSatish Balay case 3: { 57927104ee2SJacob Faibussowitsch PetscScalar yt[3] = {y[0], y[1], y[2]}, zt[3] = {0.0, 0.0, 0.0}; 580ab6a9622SMatthew G. Knepley 5819566063dSJacob Faibussowitsch PetscCall(DMPlexBasisTransformApply_Internal(dm, x, l2g, dim, yt, zt, ctx)); 5829371c9d4SSatish Balay z[0] = PetscRealPart(zt[0]); 5839371c9d4SSatish Balay z[1] = PetscRealPart(zt[1]); 5849371c9d4SSatish Balay z[2] = PetscRealPart(zt[2]); 5859371c9d4SSatish Balay } break; 586ab6a9622SMatthew G. Knepley } 587ab6a9622SMatthew G. Knepley #else 5889566063dSJacob Faibussowitsch PetscCall(DMPlexBasisTransformApply_Internal(dm, x, l2g, dim, y, z, ctx)); 589ab6a9622SMatthew G. Knepley #endif 5903ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 591ab6a9622SMatthew G. Knepley } 592ab6a9622SMatthew G. Knepley 593d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexBasisTransformApply_Internal(DM dm, const PetscReal x[], PetscBool l2g, PetscInt dim, const PetscScalar *y, PetscScalar *z, void *ctx) 594d71ae5a4SJacob Faibussowitsch { 595ca3d3a14SMatthew G. Knepley const PetscScalar *A; 596ca3d3a14SMatthew G. Knepley 597ca3d3a14SMatthew G. Knepley PetscFunctionBeginHot; 5989566063dSJacob Faibussowitsch PetscCall((*dm->transformGetMatrix)(dm, x, l2g, &A, ctx)); 599ca3d3a14SMatthew G. Knepley switch (dim) { 600d71ae5a4SJacob Faibussowitsch case 2: 601d71ae5a4SJacob Faibussowitsch DMPlex_Mult2D_Internal(A, 1, y, z); 602d71ae5a4SJacob Faibussowitsch break; 603d71ae5a4SJacob Faibussowitsch case 3: 604d71ae5a4SJacob Faibussowitsch DMPlex_Mult3D_Internal(A, 1, y, z); 605d71ae5a4SJacob Faibussowitsch break; 606ca3d3a14SMatthew G. Knepley } 6073ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 608ca3d3a14SMatthew G. Knepley } 609ca3d3a14SMatthew G. Knepley 610d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexBasisTransformField_Internal(DM dm, DM tdm, Vec tv, PetscInt p, PetscInt f, PetscBool l2g, PetscScalar *a) 611d71ae5a4SJacob Faibussowitsch { 612ca3d3a14SMatthew G. Knepley PetscSection ts; 613ca3d3a14SMatthew G. Knepley const PetscScalar *ta, *tva; 614ca3d3a14SMatthew G. Knepley PetscInt dof; 615ca3d3a14SMatthew G. Knepley 616ca3d3a14SMatthew G. Knepley PetscFunctionBeginHot; 6179566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(tdm, &ts)); 6189566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldDof(ts, p, f, &dof)); 6199566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(tv, &ta)); 6209566063dSJacob Faibussowitsch PetscCall(DMPlexPointLocalFieldRead(tdm, p, f, ta, &tva)); 621ca3d3a14SMatthew G. Knepley if (l2g) { 622ca3d3a14SMatthew G. Knepley switch (dof) { 623d71ae5a4SJacob Faibussowitsch case 4: 624d71ae5a4SJacob Faibussowitsch DMPlex_Mult2D_Internal(tva, 1, a, a); 625d71ae5a4SJacob Faibussowitsch break; 626d71ae5a4SJacob Faibussowitsch case 9: 627d71ae5a4SJacob Faibussowitsch DMPlex_Mult3D_Internal(tva, 1, a, a); 628d71ae5a4SJacob Faibussowitsch break; 629ca3d3a14SMatthew G. Knepley } 630ca3d3a14SMatthew G. Knepley } else { 631ca3d3a14SMatthew G. Knepley switch (dof) { 632d71ae5a4SJacob Faibussowitsch case 4: 633d71ae5a4SJacob Faibussowitsch DMPlex_MultTranspose2D_Internal(tva, 1, a, a); 634d71ae5a4SJacob Faibussowitsch break; 635d71ae5a4SJacob Faibussowitsch case 9: 636d71ae5a4SJacob Faibussowitsch DMPlex_MultTranspose3D_Internal(tva, 1, a, a); 637d71ae5a4SJacob Faibussowitsch break; 638ca3d3a14SMatthew G. Knepley } 639ca3d3a14SMatthew G. Knepley } 6409566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(tv, &ta)); 6413ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 642ca3d3a14SMatthew G. Knepley } 643ca3d3a14SMatthew G. Knepley 644d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexBasisTransformFieldTensor_Internal(DM dm, DM tdm, Vec tv, PetscInt pf, PetscInt f, PetscInt pg, PetscInt g, PetscBool l2g, PetscInt lda, PetscScalar *a) 645d71ae5a4SJacob Faibussowitsch { 646ca3d3a14SMatthew G. Knepley PetscSection s, ts; 647ca3d3a14SMatthew G. Knepley const PetscScalar *ta, *tvaf, *tvag; 648ca3d3a14SMatthew G. Knepley PetscInt fdof, gdof, fpdof, gpdof; 649ca3d3a14SMatthew G. Knepley 650ca3d3a14SMatthew G. Knepley PetscFunctionBeginHot; 6519566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, &s)); 6529566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(tdm, &ts)); 6539566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldDof(s, pf, f, &fpdof)); 6549566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldDof(s, pg, g, &gpdof)); 6559566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldDof(ts, pf, f, &fdof)); 6569566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldDof(ts, pg, g, &gdof)); 6579566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(tv, &ta)); 6589566063dSJacob Faibussowitsch PetscCall(DMPlexPointLocalFieldRead(tdm, pf, f, ta, &tvaf)); 6599566063dSJacob Faibussowitsch PetscCall(DMPlexPointLocalFieldRead(tdm, pg, g, ta, &tvag)); 660ca3d3a14SMatthew G. Knepley if (l2g) { 661ca3d3a14SMatthew G. Knepley switch (fdof) { 662d71ae5a4SJacob Faibussowitsch case 4: 663d71ae5a4SJacob Faibussowitsch DMPlex_MatMult2D_Internal(tvaf, gpdof, lda, a, a); 664d71ae5a4SJacob Faibussowitsch break; 665d71ae5a4SJacob Faibussowitsch case 9: 666d71ae5a4SJacob Faibussowitsch DMPlex_MatMult3D_Internal(tvaf, gpdof, lda, a, a); 667d71ae5a4SJacob Faibussowitsch break; 668ca3d3a14SMatthew G. Knepley } 669ca3d3a14SMatthew G. Knepley switch (gdof) { 670d71ae5a4SJacob Faibussowitsch case 4: 671d71ae5a4SJacob Faibussowitsch DMPlex_MatMultTransposeLeft2D_Internal(tvag, fpdof, lda, a, a); 672d71ae5a4SJacob Faibussowitsch break; 673d71ae5a4SJacob Faibussowitsch case 9: 674d71ae5a4SJacob Faibussowitsch DMPlex_MatMultTransposeLeft3D_Internal(tvag, fpdof, lda, a, a); 675d71ae5a4SJacob Faibussowitsch break; 676ca3d3a14SMatthew G. Knepley } 677ca3d3a14SMatthew G. Knepley } else { 678ca3d3a14SMatthew G. Knepley switch (fdof) { 679d71ae5a4SJacob Faibussowitsch case 4: 680d71ae5a4SJacob Faibussowitsch DMPlex_MatMultTranspose2D_Internal(tvaf, gpdof, lda, a, a); 681d71ae5a4SJacob Faibussowitsch break; 682d71ae5a4SJacob Faibussowitsch case 9: 683d71ae5a4SJacob Faibussowitsch DMPlex_MatMultTranspose3D_Internal(tvaf, gpdof, lda, a, a); 684d71ae5a4SJacob Faibussowitsch break; 685ca3d3a14SMatthew G. Knepley } 686ca3d3a14SMatthew G. Knepley switch (gdof) { 687d71ae5a4SJacob Faibussowitsch case 4: 688d71ae5a4SJacob Faibussowitsch DMPlex_MatMultLeft2D_Internal(tvag, fpdof, lda, a, a); 689d71ae5a4SJacob Faibussowitsch break; 690d71ae5a4SJacob Faibussowitsch case 9: 691d71ae5a4SJacob Faibussowitsch DMPlex_MatMultLeft3D_Internal(tvag, fpdof, lda, a, a); 692d71ae5a4SJacob Faibussowitsch break; 693ca3d3a14SMatthew G. Knepley } 694ca3d3a14SMatthew G. Knepley } 6959566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(tv, &ta)); 6963ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 697ca3d3a14SMatthew G. Knepley } 698ca3d3a14SMatthew G. Knepley 699d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexBasisTransformPoint_Internal(DM dm, DM tdm, Vec tv, PetscInt p, PetscBool fieldActive[], PetscBool l2g, PetscScalar *a) 700d71ae5a4SJacob Faibussowitsch { 701ca3d3a14SMatthew G. Knepley PetscSection s; 702ca3d3a14SMatthew G. Knepley PetscSection clSection; 703ca3d3a14SMatthew G. Knepley IS clPoints; 704ca3d3a14SMatthew G. Knepley const PetscInt *clp; 705ca3d3a14SMatthew G. Knepley PetscInt *points = NULL; 706ca3d3a14SMatthew G. Knepley PetscInt Nf, f, Np, cp, dof, d = 0; 707ca3d3a14SMatthew G. Knepley 708ca3d3a14SMatthew G. Knepley PetscFunctionBegin; 7099566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, &s)); 7109566063dSJacob Faibussowitsch PetscCall(PetscSectionGetNumFields(s, &Nf)); 71107218a29SMatthew G. Knepley PetscCall(DMPlexGetCompressedClosure(dm, s, p, 0, &Np, &points, &clSection, &clPoints, &clp)); 712ca3d3a14SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 713ca3d3a14SMatthew G. Knepley for (cp = 0; cp < Np * 2; cp += 2) { 7149566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldDof(s, points[cp], f, &dof)); 715ca3d3a14SMatthew G. Knepley if (!dof) continue; 7169566063dSJacob Faibussowitsch if (fieldActive[f]) PetscCall(DMPlexBasisTransformField_Internal(dm, tdm, tv, points[cp], f, l2g, &a[d])); 717ca3d3a14SMatthew G. Knepley d += dof; 718ca3d3a14SMatthew G. Knepley } 719ca3d3a14SMatthew G. Knepley } 7209566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreCompressedClosure(dm, s, p, &Np, &points, &clSection, &clPoints, &clp)); 7213ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 722ca3d3a14SMatthew G. Knepley } 723ca3d3a14SMatthew G. Knepley 724d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexBasisTransformPointTensor_Internal(DM dm, DM tdm, Vec tv, PetscInt p, PetscBool l2g, PetscInt lda, PetscScalar *a) 725d71ae5a4SJacob Faibussowitsch { 726ca3d3a14SMatthew G. Knepley PetscSection s; 727ca3d3a14SMatthew G. Knepley PetscSection clSection; 728ca3d3a14SMatthew G. Knepley IS clPoints; 729ca3d3a14SMatthew G. Knepley const PetscInt *clp; 730ca3d3a14SMatthew G. Knepley PetscInt *points = NULL; 7318bdb3c71SMatthew G. Knepley PetscInt Nf, f, g, Np, cpf, cpg, fdof, gdof, r, c = 0; 732ca3d3a14SMatthew G. Knepley 733ca3d3a14SMatthew G. Knepley PetscFunctionBegin; 7349566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, &s)); 7359566063dSJacob Faibussowitsch PetscCall(PetscSectionGetNumFields(s, &Nf)); 73607218a29SMatthew G. Knepley PetscCall(DMPlexGetCompressedClosure(dm, s, p, 0, &Np, &points, &clSection, &clPoints, &clp)); 737ca3d3a14SMatthew G. Knepley for (f = 0, r = 0; f < Nf; ++f) { 738ca3d3a14SMatthew G. Knepley for (cpf = 0; cpf < Np * 2; cpf += 2) { 7399566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldDof(s, points[cpf], f, &fdof)); 740ca3d3a14SMatthew G. Knepley for (g = 0, c = 0; g < Nf; ++g) { 741ca3d3a14SMatthew G. Knepley for (cpg = 0; cpg < Np * 2; cpg += 2) { 7429566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldDof(s, points[cpg], g, &gdof)); 7439566063dSJacob Faibussowitsch PetscCall(DMPlexBasisTransformFieldTensor_Internal(dm, tdm, tv, points[cpf], f, points[cpg], g, l2g, lda, &a[r * lda + c])); 744ca3d3a14SMatthew G. Knepley c += gdof; 745ca3d3a14SMatthew G. Knepley } 746ca3d3a14SMatthew G. Knepley } 74763a3b9bcSJacob Faibussowitsch PetscCheck(c == lda, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid number of columns %" PetscInt_FMT " should be %" PetscInt_FMT, c, lda); 748ca3d3a14SMatthew G. Knepley r += fdof; 749ca3d3a14SMatthew G. Knepley } 750ca3d3a14SMatthew G. Knepley } 75163a3b9bcSJacob Faibussowitsch PetscCheck(r == lda, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid number of rows %" PetscInt_FMT " should be %" PetscInt_FMT, c, lda); 7529566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreCompressedClosure(dm, s, p, &Np, &points, &clSection, &clPoints, &clp)); 7533ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 754ca3d3a14SMatthew G. Knepley } 755ca3d3a14SMatthew G. Knepley 756d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexBasisTransform_Internal(DM dm, Vec lv, PetscBool l2g) 757d71ae5a4SJacob Faibussowitsch { 758ca3d3a14SMatthew G. Knepley DM tdm; 759ca3d3a14SMatthew G. Knepley Vec tv; 760ca3d3a14SMatthew G. Knepley PetscSection ts, s; 761ca3d3a14SMatthew G. Knepley const PetscScalar *ta; 762ca3d3a14SMatthew G. Knepley PetscScalar *a, *va; 763ca3d3a14SMatthew G. Knepley PetscInt pStart, pEnd, p, Nf, f; 764ca3d3a14SMatthew G. Knepley 765ca3d3a14SMatthew G. Knepley PetscFunctionBegin; 7669566063dSJacob Faibussowitsch PetscCall(DMGetBasisTransformDM_Internal(dm, &tdm)); 7679566063dSJacob Faibussowitsch PetscCall(DMGetBasisTransformVec_Internal(dm, &tv)); 7689566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(tdm, &ts)); 7699566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, &s)); 7709566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(s, &pStart, &pEnd)); 7719566063dSJacob Faibussowitsch PetscCall(PetscSectionGetNumFields(s, &Nf)); 7729566063dSJacob Faibussowitsch PetscCall(VecGetArray(lv, &a)); 7739566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(tv, &ta)); 774ca3d3a14SMatthew G. Knepley for (p = pStart; p < pEnd; ++p) { 775ca3d3a14SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 7769566063dSJacob Faibussowitsch PetscCall(DMPlexPointLocalFieldRef(dm, p, f, a, &va)); 7779566063dSJacob Faibussowitsch PetscCall(DMPlexBasisTransformField_Internal(dm, tdm, tv, p, f, l2g, va)); 778ca3d3a14SMatthew G. Knepley } 779ca3d3a14SMatthew G. Knepley } 7809566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(lv, &a)); 7819566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(tv, &ta)); 7823ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 783ca3d3a14SMatthew G. Knepley } 784ca3d3a14SMatthew G. Knepley 785ca3d3a14SMatthew G. Knepley /*@ 786ca3d3a14SMatthew G. Knepley DMPlexGlobalToLocalBasis - Transform the values in the given local vector from the global basis to the local basis 787ca3d3a14SMatthew G. Knepley 788ca3d3a14SMatthew G. Knepley Input Parameters: 789a1cb98faSBarry Smith + dm - The `DM` 790ca3d3a14SMatthew G. Knepley - lv - A local vector with values in the global basis 791ca3d3a14SMatthew G. Knepley 7922fe279fdSBarry Smith Output Parameter: 793ca3d3a14SMatthew G. Knepley . lv - A local vector with values in the local basis 794ca3d3a14SMatthew G. Knepley 795ca3d3a14SMatthew G. Knepley Level: developer 796ca3d3a14SMatthew G. Knepley 797a1cb98faSBarry Smith Note: 798a1cb98faSBarry Smith This method is only intended to be called inside `DMGlobalToLocal()`. It is unlikely that a user will have a local vector full of coefficients for the global basis unless they are reimplementing GlobalToLocal. 799a1cb98faSBarry Smith 8001cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexLocalToGlobalBasis()`, `DMGetLocalSection()`, `DMPlexCreateBasisRotation()` 801ca3d3a14SMatthew G. Knepley @*/ 802d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexGlobalToLocalBasis(DM dm, Vec lv) 803d71ae5a4SJacob Faibussowitsch { 804ca3d3a14SMatthew G. Knepley PetscFunctionBegin; 805ca3d3a14SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 806ca3d3a14SMatthew G. Knepley PetscValidHeaderSpecific(lv, VEC_CLASSID, 2); 8079566063dSJacob Faibussowitsch PetscCall(DMPlexBasisTransform_Internal(dm, lv, PETSC_FALSE)); 8083ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 809ca3d3a14SMatthew G. Knepley } 810ca3d3a14SMatthew G. Knepley 811ca3d3a14SMatthew G. Knepley /*@ 812ca3d3a14SMatthew G. Knepley DMPlexLocalToGlobalBasis - Transform the values in the given local vector from the local basis to the global basis 813ca3d3a14SMatthew G. Knepley 814ca3d3a14SMatthew G. Knepley Input Parameters: 815a1cb98faSBarry Smith + dm - The `DM` 816ca3d3a14SMatthew G. Knepley - lv - A local vector with values in the local basis 817ca3d3a14SMatthew G. Knepley 8182fe279fdSBarry Smith Output Parameter: 819ca3d3a14SMatthew G. Knepley . lv - A local vector with values in the global basis 820ca3d3a14SMatthew G. Knepley 821ca3d3a14SMatthew G. Knepley Level: developer 822ca3d3a14SMatthew G. Knepley 823a1cb98faSBarry Smith Note: 824a1cb98faSBarry Smith This method is only intended to be called inside `DMGlobalToLocal()`. It is unlikely that a user would want a local vector full of coefficients for the global basis unless they are reimplementing GlobalToLocal. 825a1cb98faSBarry Smith 8261cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexGlobalToLocalBasis()`, `DMGetLocalSection()`, `DMPlexCreateBasisRotation()` 827ca3d3a14SMatthew G. Knepley @*/ 828d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexLocalToGlobalBasis(DM dm, Vec lv) 829d71ae5a4SJacob Faibussowitsch { 830ca3d3a14SMatthew G. Knepley PetscFunctionBegin; 831ca3d3a14SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 832ca3d3a14SMatthew G. Knepley PetscValidHeaderSpecific(lv, VEC_CLASSID, 2); 8339566063dSJacob Faibussowitsch PetscCall(DMPlexBasisTransform_Internal(dm, lv, PETSC_TRUE)); 8343ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 835ca3d3a14SMatthew G. Knepley } 836ca3d3a14SMatthew G. Knepley 837ca3d3a14SMatthew G. Knepley /*@ 838ca3d3a14SMatthew G. Knepley DMPlexCreateBasisRotation - Create an internal transformation from the global basis, used to specify boundary conditions 839ca3d3a14SMatthew G. Knepley and global solutions, to a local basis, appropriate for discretization integrals and assembly. 840ca3d3a14SMatthew G. Knepley 841ca3d3a14SMatthew G. Knepley Input Parameters: 842a1cb98faSBarry Smith + dm - The `DM` 843ca3d3a14SMatthew G. Knepley . alpha - The first Euler angle, and in 2D the only one 844ca3d3a14SMatthew G. Knepley . beta - The second Euler angle 845f0fc11ceSJed Brown - gamma - The third Euler angle 846ca3d3a14SMatthew G. Knepley 847ca3d3a14SMatthew G. Knepley Level: developer 848ca3d3a14SMatthew G. Knepley 849a1cb98faSBarry Smith Note: 850a1cb98faSBarry Smith Following https://en.wikipedia.org/wiki/Euler_angles, we will specify Euler angles by extrinsic rotations, meaning that 851a1cb98faSBarry Smith we rotate with respect to a fixed initial coordinate system, the local basis (x-y-z). The global basis (X-Y-Z) is reached as follows 852a1cb98faSBarry Smith .vb 853a1cb98faSBarry Smith The XYZ system rotates about the z axis by alpha. The X axis is now at angle alpha with respect to the x axis. 854a1cb98faSBarry Smith The XYZ system rotates again about the x axis by beta. The Z axis is now at angle beta with respect to the z axis. 855a1cb98faSBarry Smith The XYZ system rotates a third time about the z axis by gamma. 856a1cb98faSBarry Smith .ve 857a1cb98faSBarry Smith 8581cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexGlobalToLocalBasis()`, `DMPlexLocalToGlobalBasis()` 859ca3d3a14SMatthew G. Knepley @*/ 860d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexCreateBasisRotation(DM dm, PetscReal alpha, PetscReal beta, PetscReal gamma) 861d71ae5a4SJacob Faibussowitsch { 862ca3d3a14SMatthew G. Knepley RotCtx *rc; 863ca3d3a14SMatthew G. Knepley PetscInt cdim; 864ca3d3a14SMatthew G. Knepley 865362febeeSStefano Zampini PetscFunctionBegin; 8669566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDim(dm, &cdim)); 8679566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(1, &rc)); 868ca3d3a14SMatthew G. Knepley dm->transformCtx = rc; 869ca3d3a14SMatthew G. Knepley dm->transformSetUp = DMPlexBasisTransformSetUp_Rotation_Internal; 870ca3d3a14SMatthew G. Knepley dm->transformDestroy = DMPlexBasisTransformDestroy_Rotation_Internal; 871ca3d3a14SMatthew G. Knepley dm->transformGetMatrix = DMPlexBasisTransformGetMatrix_Rotation_Internal; 872ca3d3a14SMatthew G. Knepley rc->dim = cdim; 873ca3d3a14SMatthew G. Knepley rc->alpha = alpha; 874ca3d3a14SMatthew G. Knepley rc->beta = beta; 875ca3d3a14SMatthew G. Knepley rc->gamma = gamma; 8769566063dSJacob Faibussowitsch PetscCall((*dm->transformSetUp)(dm, dm->transformCtx)); 8779566063dSJacob Faibussowitsch PetscCall(DMConstructBasisTransform_Internal(dm)); 8783ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 879ca3d3a14SMatthew G. Knepley } 880ca3d3a14SMatthew G. Knepley 881b278463cSMatthew G. Knepley /*@C 882ece3a9fcSMatthew G. Knepley DMPlexInsertBoundaryValuesEssential - Insert boundary values into a local vector using a function of the coordinates 883b278463cSMatthew G. Knepley 884b278463cSMatthew G. Knepley Input Parameters: 885a1cb98faSBarry Smith + dm - The `DM`, with a `PetscDS` that matches the problem being constrained 886b278463cSMatthew G. Knepley . time - The time 887b278463cSMatthew G. Knepley . field - The field to constrain 8881c531cf8SMatthew G. Knepley . Nc - The number of constrained field components, or 0 for all components 88920f4b53cSBarry Smith . comps - An array of constrained component numbers, or `NULL` for all components 890a1cb98faSBarry Smith . label - The `DMLabel` defining constrained points 891a1cb98faSBarry Smith . numids - The number of `DMLabel` ids for constrained points 892b278463cSMatthew G. Knepley . ids - An array of ids for constrained points 893b278463cSMatthew G. Knepley . func - A pointwise function giving boundary values 894b278463cSMatthew G. Knepley - ctx - An optional user context for bcFunc 895b278463cSMatthew G. Knepley 896b278463cSMatthew G. Knepley Output Parameter: 897b278463cSMatthew G. Knepley . locX - A local vector to receives the boundary values 898b278463cSMatthew G. Knepley 899b278463cSMatthew G. Knepley Level: developer 900b278463cSMatthew G. Knepley 9011cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMLabel`, `DMPlexInsertBoundaryValuesEssentialField()`, `DMPlexInsertBoundaryValuesEssentialBdField()`, `DMAddBoundary()` 902b278463cSMatthew G. Knepley @*/ 903d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexInsertBoundaryValuesEssential(DM dm, PetscReal time, PetscInt field, PetscInt Nc, const PetscInt comps[], DMLabel label, PetscInt numids, const PetscInt ids[], PetscErrorCode (*func)(PetscInt, PetscReal, const PetscReal[], PetscInt, PetscScalar *, void *), void *ctx, Vec locX) 904d71ae5a4SJacob Faibussowitsch { 9050163fd50SMatthew G. Knepley PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal x[], PetscInt, PetscScalar *u, void *ctx); 90655f2e967SMatthew G. Knepley void **ctxs; 907d7ddef95SMatthew G. Knepley PetscInt numFields; 908d7ddef95SMatthew G. Knepley 909d7ddef95SMatthew G. Knepley PetscFunctionBegin; 9109566063dSJacob Faibussowitsch PetscCall(DMGetNumFields(dm, &numFields)); 9119566063dSJacob Faibussowitsch PetscCall(PetscCalloc2(numFields, &funcs, numFields, &ctxs)); 912d7ddef95SMatthew G. Knepley funcs[field] = func; 913d7ddef95SMatthew G. Knepley ctxs[field] = ctx; 9149566063dSJacob Faibussowitsch PetscCall(DMProjectFunctionLabelLocal(dm, time, label, numids, ids, Nc, comps, funcs, ctxs, INSERT_BC_VALUES, locX)); 9159566063dSJacob Faibussowitsch PetscCall(PetscFree2(funcs, ctxs)); 9163ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 917d7ddef95SMatthew G. Knepley } 918d7ddef95SMatthew G. Knepley 919b278463cSMatthew G. Knepley /*@C 920ece3a9fcSMatthew G. Knepley DMPlexInsertBoundaryValuesEssentialField - Insert boundary values into a local vector using a function of the coordinates and field data 921b278463cSMatthew G. Knepley 922b278463cSMatthew G. Knepley Input Parameters: 923a1cb98faSBarry Smith + dm - The `DM`, with a `PetscDS` that matches the problem being constrained 924b278463cSMatthew G. Knepley . time - The time 925b278463cSMatthew G. Knepley . locU - A local vector with the input solution values 926b278463cSMatthew G. Knepley . field - The field to constrain 9271c531cf8SMatthew G. Knepley . Nc - The number of constrained field components, or 0 for all components 92820f4b53cSBarry Smith . comps - An array of constrained component numbers, or `NULL` for all components 929a1cb98faSBarry Smith . label - The `DMLabel` defining constrained points 930a1cb98faSBarry Smith . numids - The number of `DMLabel` ids for constrained points 931b278463cSMatthew G. Knepley . ids - An array of ids for constrained points 932b278463cSMatthew G. Knepley . func - A pointwise function giving boundary values 933b278463cSMatthew G. Knepley - ctx - An optional user context for bcFunc 934b278463cSMatthew G. Knepley 935b278463cSMatthew G. Knepley Output Parameter: 936b278463cSMatthew G. Knepley . locX - A local vector to receives the boundary values 937b278463cSMatthew G. Knepley 938b278463cSMatthew G. Knepley Level: developer 939b278463cSMatthew G. Knepley 9401cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexInsertBoundaryValuesEssential()`, `DMPlexInsertBoundaryValuesEssentialBdField()`, `DMAddBoundary()` 941b278463cSMatthew G. Knepley @*/ 942d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexInsertBoundaryValuesEssentialField(DM dm, PetscReal time, Vec locU, PetscInt field, PetscInt Nc, const PetscInt comps[], DMLabel label, PetscInt numids, const PetscInt ids[], void (*func)(PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], PetscReal, const PetscReal[], PetscInt, const PetscScalar[], PetscScalar[]), void *ctx, Vec locX) 943d71ae5a4SJacob Faibussowitsch { 9449371c9d4SSatish Balay void (**funcs)(PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], PetscReal, const PetscReal[], PetscInt, const PetscScalar[], PetscScalar[]); 945c60e475cSMatthew G. Knepley void **ctxs; 946c60e475cSMatthew G. Knepley PetscInt numFields; 947c60e475cSMatthew G. Knepley 948c60e475cSMatthew G. Knepley PetscFunctionBegin; 9499566063dSJacob Faibussowitsch PetscCall(DMGetNumFields(dm, &numFields)); 9509566063dSJacob Faibussowitsch PetscCall(PetscCalloc2(numFields, &funcs, numFields, &ctxs)); 951c60e475cSMatthew G. Knepley funcs[field] = func; 952c60e475cSMatthew G. Knepley ctxs[field] = ctx; 9539566063dSJacob Faibussowitsch PetscCall(DMProjectFieldLabelLocal(dm, time, label, numids, ids, Nc, comps, locU, funcs, INSERT_BC_VALUES, locX)); 9549566063dSJacob Faibussowitsch PetscCall(PetscFree2(funcs, ctxs)); 9553ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 956c60e475cSMatthew G. Knepley } 957c60e475cSMatthew G. Knepley 958b278463cSMatthew G. Knepley /*@C 959d5b43468SJose E. Roman DMPlexInsertBoundaryValuesEssentialBdField - Insert boundary values into a local vector using a function of the coordinates and boundary field data 960ece3a9fcSMatthew G. Knepley 96120f4b53cSBarry Smith Collective 962ece3a9fcSMatthew G. Knepley 963ece3a9fcSMatthew G. Knepley Input Parameters: 964a1cb98faSBarry Smith + dm - The `DM`, with a `PetscDS` that matches the problem being constrained 965ece3a9fcSMatthew G. Knepley . time - The time 966ece3a9fcSMatthew G. Knepley . locU - A local vector with the input solution values 967ece3a9fcSMatthew G. Knepley . field - The field to constrain 968ece3a9fcSMatthew G. Knepley . Nc - The number of constrained field components, or 0 for all components 96920f4b53cSBarry Smith . comps - An array of constrained component numbers, or `NULL` for all components 970a1cb98faSBarry Smith . label - The `DMLabel` defining constrained points 971a1cb98faSBarry Smith . numids - The number of `DMLabel` ids for constrained points 972ece3a9fcSMatthew G. Knepley . ids - An array of ids for constrained points 97320f4b53cSBarry Smith . func - A pointwise function giving boundary values, the calling sequence is given in `DMProjectBdFieldLabelLocal()` 97420f4b53cSBarry Smith - ctx - An optional user context for `func` 975ece3a9fcSMatthew G. Knepley 976ece3a9fcSMatthew G. Knepley Output Parameter: 977ece3a9fcSMatthew G. Knepley . locX - A local vector to receive the boundary values 978ece3a9fcSMatthew G. Knepley 979ece3a9fcSMatthew G. Knepley Level: developer 980ece3a9fcSMatthew G. Knepley 9811cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMProjectBdFieldLabelLocal()`, `DMPlexInsertBoundaryValuesEssential()`, `DMPlexInsertBoundaryValuesEssentialField()`, `DMAddBoundary()` 982ece3a9fcSMatthew G. Knepley @*/ 983d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexInsertBoundaryValuesEssentialBdField(DM dm, PetscReal time, Vec locU, PetscInt field, PetscInt Nc, const PetscInt comps[], DMLabel label, PetscInt numids, const PetscInt ids[], void (*func)(PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], PetscReal, const PetscReal[], const PetscReal[], PetscInt, const PetscScalar[], PetscScalar[]), void *ctx, Vec locX) 984d71ae5a4SJacob Faibussowitsch { 9859371c9d4SSatish Balay void (**funcs)(PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], PetscReal, const PetscReal[], const PetscReal[], PetscInt, const PetscScalar[], PetscScalar[]); 986ece3a9fcSMatthew G. Knepley void **ctxs; 987ece3a9fcSMatthew G. Knepley PetscInt numFields; 988ece3a9fcSMatthew G. Knepley 989ece3a9fcSMatthew G. Knepley PetscFunctionBegin; 9909566063dSJacob Faibussowitsch PetscCall(DMGetNumFields(dm, &numFields)); 9919566063dSJacob Faibussowitsch PetscCall(PetscCalloc2(numFields, &funcs, numFields, &ctxs)); 992ece3a9fcSMatthew G. Knepley funcs[field] = func; 993ece3a9fcSMatthew G. Knepley ctxs[field] = ctx; 9949566063dSJacob Faibussowitsch PetscCall(DMProjectBdFieldLabelLocal(dm, time, label, numids, ids, Nc, comps, locU, funcs, INSERT_BC_VALUES, locX)); 9959566063dSJacob Faibussowitsch PetscCall(PetscFree2(funcs, ctxs)); 9963ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 997ece3a9fcSMatthew G. Knepley } 998ece3a9fcSMatthew G. Knepley 999ece3a9fcSMatthew G. Knepley /*@C 1000b278463cSMatthew G. Knepley DMPlexInsertBoundaryValuesRiemann - Insert boundary values into a local vector 1001b278463cSMatthew G. Knepley 1002b278463cSMatthew G. Knepley Input Parameters: 1003a1cb98faSBarry Smith + dm - The `DM`, with a `PetscDS` that matches the problem being constrained 1004b278463cSMatthew G. Knepley . time - The time 1005b278463cSMatthew G. Knepley . faceGeometry - A vector with the FVM face geometry information 1006b278463cSMatthew G. Knepley . cellGeometry - A vector with the FVM cell geometry information 1007b278463cSMatthew G. Knepley . Grad - A vector with the FVM cell gradient information 1008b278463cSMatthew G. Knepley . field - The field to constrain 10091c531cf8SMatthew G. Knepley . Nc - The number of constrained field components, or 0 for all components 101020f4b53cSBarry Smith . comps - An array of constrained component numbers, or `NULL` for all components 1011a1cb98faSBarry Smith . label - The `DMLabel` defining constrained points 1012a1cb98faSBarry Smith . numids - The number of `DMLabel` ids for constrained points 1013b278463cSMatthew G. Knepley . ids - An array of ids for constrained points 1014b278463cSMatthew G. Knepley . func - A pointwise function giving boundary values 1015b278463cSMatthew G. Knepley - ctx - An optional user context for bcFunc 1016b278463cSMatthew G. Knepley 1017b278463cSMatthew G. Knepley Output Parameter: 1018b278463cSMatthew G. Knepley . locX - A local vector to receives the boundary values 1019b278463cSMatthew G. Knepley 1020b278463cSMatthew G. Knepley Level: developer 1021b278463cSMatthew G. Knepley 1022a1cb98faSBarry Smith Note: 1023a1cb98faSBarry Smith This implementation currently ignores the numcomps/comps argument from `DMAddBoundary()` 1024a1cb98faSBarry Smith 10251cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexInsertBoundaryValuesEssential()`, `DMPlexInsertBoundaryValuesEssentialField()`, `DMAddBoundary()` 1026b278463cSMatthew G. Knepley @*/ 1027d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexInsertBoundaryValuesRiemann(DM dm, PetscReal time, Vec faceGeometry, Vec cellGeometry, Vec Grad, PetscInt field, PetscInt Nc, const PetscInt comps[], DMLabel label, PetscInt numids, const PetscInt ids[], PetscErrorCode (*func)(PetscReal, const PetscReal *, const PetscReal *, const PetscScalar *, PetscScalar *, void *), void *ctx, Vec locX) 1028d71ae5a4SJacob Faibussowitsch { 102961f58d28SMatthew G. Knepley PetscDS prob; 1030da97024aSMatthew G. Knepley PetscSF sf; 1031d7ddef95SMatthew G. Knepley DM dmFace, dmCell, dmGrad; 103220369375SToby Isaac const PetscScalar *facegeom, *cellgeom = NULL, *grad; 1033da97024aSMatthew G. Knepley const PetscInt *leaves; 1034d7ddef95SMatthew G. Knepley PetscScalar *x, *fx; 1035520b3818SMatthew G. Knepley PetscInt dim, nleaves, loc, fStart, fEnd, pdim, i; 10363ba16761SJacob Faibussowitsch PetscErrorCode ierru = PETSC_SUCCESS; 1037d7ddef95SMatthew G. Knepley 1038d7ddef95SMatthew G. Knepley PetscFunctionBegin; 10399566063dSJacob Faibussowitsch PetscCall(DMGetPointSF(dm, &sf)); 10409566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(sf, NULL, &nleaves, &leaves, NULL)); 1041da97024aSMatthew G. Knepley nleaves = PetscMax(0, nleaves); 10429566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 10439566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(dm, 1, &fStart, &fEnd)); 10449566063dSJacob Faibussowitsch PetscCall(DMGetDS(dm, &prob)); 10459566063dSJacob Faibussowitsch PetscCall(VecGetDM(faceGeometry, &dmFace)); 10469566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(faceGeometry, &facegeom)); 104720369375SToby Isaac if (cellGeometry) { 10489566063dSJacob Faibussowitsch PetscCall(VecGetDM(cellGeometry, &dmCell)); 10499566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(cellGeometry, &cellgeom)); 105020369375SToby Isaac } 1051d7ddef95SMatthew G. Knepley if (Grad) { 1052c0a6632aSMatthew G. Knepley PetscFV fv; 1053c0a6632aSMatthew G. Knepley 10549566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(prob, field, (PetscObject *)&fv)); 10559566063dSJacob Faibussowitsch PetscCall(VecGetDM(Grad, &dmGrad)); 10569566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(Grad, &grad)); 10579566063dSJacob Faibussowitsch PetscCall(PetscFVGetNumComponents(fv, &pdim)); 10589566063dSJacob Faibussowitsch PetscCall(DMGetWorkArray(dm, pdim, MPIU_SCALAR, &fx)); 1059d7ddef95SMatthew G. Knepley } 10609566063dSJacob Faibussowitsch PetscCall(VecGetArray(locX, &x)); 1061d7ddef95SMatthew G. Knepley for (i = 0; i < numids; ++i) { 1062d7ddef95SMatthew G. Knepley IS faceIS; 1063d7ddef95SMatthew G. Knepley const PetscInt *faces; 1064d7ddef95SMatthew G. Knepley PetscInt numFaces, f; 1065d7ddef95SMatthew G. Knepley 10669566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(label, ids[i], &faceIS)); 1067d7ddef95SMatthew G. Knepley if (!faceIS) continue; /* No points with that id on this process */ 10689566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(faceIS, &numFaces)); 10699566063dSJacob Faibussowitsch PetscCall(ISGetIndices(faceIS, &faces)); 1070d7ddef95SMatthew G. Knepley for (f = 0; f < numFaces; ++f) { 1071d7ddef95SMatthew G. Knepley const PetscInt face = faces[f], *cells; 1072640bce14SSatish Balay PetscFVFaceGeom *fg; 1073d7ddef95SMatthew G. Knepley 1074d7ddef95SMatthew G. Knepley if ((face < fStart) || (face >= fEnd)) continue; /* Refinement adds non-faces to labels */ 10759566063dSJacob Faibussowitsch PetscCall(PetscFindInt(face, nleaves, (PetscInt *)leaves, &loc)); 1076da97024aSMatthew G. Knepley if (loc >= 0) continue; 10779566063dSJacob Faibussowitsch PetscCall(DMPlexPointLocalRead(dmFace, face, facegeom, &fg)); 10789566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(dm, face, &cells)); 1079d7ddef95SMatthew G. Knepley if (Grad) { 1080640bce14SSatish Balay PetscFVCellGeom *cg; 1081640bce14SSatish Balay PetscScalar *cx, *cgrad; 1082d7ddef95SMatthew G. Knepley PetscScalar *xG; 1083d7ddef95SMatthew G. Knepley PetscReal dx[3]; 1084d7ddef95SMatthew G. Knepley PetscInt d; 1085d7ddef95SMatthew G. Knepley 10869566063dSJacob Faibussowitsch PetscCall(DMPlexPointLocalRead(dmCell, cells[0], cellgeom, &cg)); 10879566063dSJacob Faibussowitsch PetscCall(DMPlexPointLocalRead(dm, cells[0], x, &cx)); 10889566063dSJacob Faibussowitsch PetscCall(DMPlexPointLocalRead(dmGrad, cells[0], grad, &cgrad)); 10899566063dSJacob Faibussowitsch PetscCall(DMPlexPointLocalFieldRef(dm, cells[1], field, x, &xG)); 1090d7ddef95SMatthew G. Knepley DMPlex_WaxpyD_Internal(dim, -1, cg->centroid, fg->centroid, dx); 1091d7ddef95SMatthew G. Knepley for (d = 0; d < pdim; ++d) fx[d] = cx[d] + DMPlex_DotD_Internal(dim, &cgrad[d * dim], dx); 10929566063dSJacob Faibussowitsch PetscCall((*func)(time, fg->centroid, fg->normal, fx, xG, ctx)); 1093d7ddef95SMatthew G. Knepley } else { 1094640bce14SSatish Balay PetscScalar *xI; 1095d7ddef95SMatthew G. Knepley PetscScalar *xG; 1096d7ddef95SMatthew G. Knepley 10979566063dSJacob Faibussowitsch PetscCall(DMPlexPointLocalRead(dm, cells[0], x, &xI)); 10989566063dSJacob Faibussowitsch PetscCall(DMPlexPointLocalFieldRef(dm, cells[1], field, x, &xG)); 1099e735a8a9SMatthew G. Knepley ierru = (*func)(time, fg->centroid, fg->normal, xI, xG, ctx); 1100e735a8a9SMatthew G. Knepley if (ierru) { 11019566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(faceIS, &faces)); 11029566063dSJacob Faibussowitsch PetscCall(ISDestroy(&faceIS)); 1103e735a8a9SMatthew G. Knepley goto cleanup; 1104e735a8a9SMatthew G. Knepley } 1105d7ddef95SMatthew G. Knepley } 1106d7ddef95SMatthew G. Knepley } 11079566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(faceIS, &faces)); 11089566063dSJacob Faibussowitsch PetscCall(ISDestroy(&faceIS)); 1109d7ddef95SMatthew G. Knepley } 1110e735a8a9SMatthew G. Knepley cleanup: 11119566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(locX, &x)); 1112d7ddef95SMatthew G. Knepley if (Grad) { 11139566063dSJacob Faibussowitsch PetscCall(DMRestoreWorkArray(dm, pdim, MPIU_SCALAR, &fx)); 11149566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(Grad, &grad)); 1115d7ddef95SMatthew G. Knepley } 11169566063dSJacob Faibussowitsch if (cellGeometry) PetscCall(VecRestoreArrayRead(cellGeometry, &cellgeom)); 11179566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(faceGeometry, &facegeom)); 11189566063dSJacob Faibussowitsch PetscCall(ierru); 11193ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1120d7ddef95SMatthew G. Knepley } 1121d7ddef95SMatthew G. Knepley 1122d71ae5a4SJacob Faibussowitsch static PetscErrorCode zero(PetscInt dim, PetscReal time, const PetscReal x[], PetscInt Nc, PetscScalar *u, void *ctx) 1123d71ae5a4SJacob Faibussowitsch { 11240c364540SMatthew G. Knepley PetscInt c; 11250c364540SMatthew G. Knepley for (c = 0; c < Nc; ++c) u[c] = 0.0; 11263ba16761SJacob Faibussowitsch return PETSC_SUCCESS; 11270c364540SMatthew G. Knepley } 11280c364540SMatthew G. Knepley 1129d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexInsertBoundaryValues_Plex(DM dm, PetscBool insertEssential, Vec locX, PetscReal time, Vec faceGeomFVM, Vec cellGeomFVM, Vec gradFVM) 1130d71ae5a4SJacob Faibussowitsch { 11310c364540SMatthew G. Knepley PetscObject isZero; 1132e5e52638SMatthew G. Knepley PetscDS prob; 1133d7ddef95SMatthew G. Knepley PetscInt numBd, b; 113455f2e967SMatthew G. Knepley 113555f2e967SMatthew G. Knepley PetscFunctionBegin; 11369566063dSJacob Faibussowitsch PetscCall(DMGetDS(dm, &prob)); 11379566063dSJacob Faibussowitsch PetscCall(PetscDSGetNumBoundary(prob, &numBd)); 11389566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)locX, "__Vec_bc_zero__", &isZero)); 1139450c7a9fSMatthew G. Knepley PetscCall(PetscDSUpdateBoundaryLabels(prob, dm)); 114055f2e967SMatthew G. Knepley for (b = 0; b < numBd; ++b) { 114145480ffeSMatthew G. Knepley PetscWeakForm wf; 1142f971fd6bSMatthew G. Knepley DMBoundaryConditionType type; 114345480ffeSMatthew G. Knepley const char *name; 1144d7ddef95SMatthew G. Knepley DMLabel label; 11451c531cf8SMatthew G. Knepley PetscInt field, Nc; 11461c531cf8SMatthew G. Knepley const PetscInt *comps; 1147d7ddef95SMatthew G. Knepley PetscObject obj; 1148d7ddef95SMatthew G. Knepley PetscClassId id; 114945480ffeSMatthew G. Knepley void (*bvfunc)(void); 1150d7ddef95SMatthew G. Knepley PetscInt numids; 1151d7ddef95SMatthew G. Knepley const PetscInt *ids; 115255f2e967SMatthew G. Knepley void *ctx; 115355f2e967SMatthew G. Knepley 11549566063dSJacob Faibussowitsch PetscCall(PetscDSGetBoundary(prob, b, &wf, &type, &name, &label, &numids, &ids, &field, &Nc, &comps, &bvfunc, NULL, &ctx)); 1155f971fd6bSMatthew G. Knepley if (insertEssential != (type & DM_BC_ESSENTIAL)) continue; 11569566063dSJacob Faibussowitsch PetscCall(DMGetField(dm, field, NULL, &obj)); 11579566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 1158d7ddef95SMatthew G. Knepley if (id == PETSCFE_CLASSID) { 1159c60e475cSMatthew G. Knepley switch (type) { 1160c60e475cSMatthew G. Knepley /* for FEM, there is no insertion to be done for non-essential boundary conditions */ 11619371c9d4SSatish Balay case DM_BC_ESSENTIAL: { 11628434afd1SBarry Smith PetscSimplePointFn *func = (PetscSimplePointFn *)bvfunc; 116345480ffeSMatthew G. Knepley 116445480ffeSMatthew G. Knepley if (isZero) func = zero; 11659566063dSJacob Faibussowitsch PetscCall(DMPlexLabelAddCells(dm, label)); 11669566063dSJacob Faibussowitsch PetscCall(DMPlexInsertBoundaryValuesEssential(dm, time, field, Nc, comps, label, numids, ids, func, ctx, locX)); 11679566063dSJacob Faibussowitsch PetscCall(DMPlexLabelClearCells(dm, label)); 11689371c9d4SSatish Balay } break; 11699371c9d4SSatish Balay case DM_BC_ESSENTIAL_FIELD: { 117045480ffeSMatthew G. Knepley PetscPointFunc func = (PetscPointFunc)bvfunc; 117145480ffeSMatthew G. Knepley 11729566063dSJacob Faibussowitsch PetscCall(DMPlexLabelAddCells(dm, label)); 11739566063dSJacob Faibussowitsch PetscCall(DMPlexInsertBoundaryValuesEssentialField(dm, time, locX, field, Nc, comps, label, numids, ids, func, ctx, locX)); 11749566063dSJacob Faibussowitsch PetscCall(DMPlexLabelClearCells(dm, label)); 11759371c9d4SSatish Balay } break; 1176d71ae5a4SJacob Faibussowitsch default: 1177d71ae5a4SJacob Faibussowitsch break; 1178c60e475cSMatthew G. Knepley } 1179d7ddef95SMatthew G. Knepley } else if (id == PETSCFV_CLASSID) { 118045480ffeSMatthew G. Knepley { 118145480ffeSMatthew G. Knepley PetscErrorCode (*func)(PetscReal, const PetscReal *, const PetscReal *, const PetscScalar *, PetscScalar *, void *) = (PetscErrorCode(*)(PetscReal, const PetscReal *, const PetscReal *, const PetscScalar *, PetscScalar *, void *))bvfunc; 118245480ffeSMatthew G. Knepley 118343ea7facSMatthew G. Knepley if (!faceGeomFVM) continue; 11849566063dSJacob Faibussowitsch PetscCall(DMPlexInsertBoundaryValuesRiemann(dm, time, faceGeomFVM, cellGeomFVM, gradFVM, field, Nc, comps, label, numids, ids, func, ctx, locX)); 118545480ffeSMatthew G. Knepley } 118663a3b9bcSJacob Faibussowitsch } else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, field); 118755f2e967SMatthew G. Knepley } 11883ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 118955f2e967SMatthew G. Knepley } 119055f2e967SMatthew G. Knepley 1191d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexInsertTimeDerivativeBoundaryValues_Plex(DM dm, PetscBool insertEssential, Vec locX, PetscReal time, Vec faceGeomFVM, Vec cellGeomFVM, Vec gradFVM) 1192d71ae5a4SJacob Faibussowitsch { 119356cf3b9cSMatthew G. Knepley PetscObject isZero; 119456cf3b9cSMatthew G. Knepley PetscDS prob; 119556cf3b9cSMatthew G. Knepley PetscInt numBd, b; 119656cf3b9cSMatthew G. Knepley 119756cf3b9cSMatthew G. Knepley PetscFunctionBegin; 11983ba16761SJacob Faibussowitsch if (!locX) PetscFunctionReturn(PETSC_SUCCESS); 11999566063dSJacob Faibussowitsch PetscCall(DMGetDS(dm, &prob)); 12009566063dSJacob Faibussowitsch PetscCall(PetscDSGetNumBoundary(prob, &numBd)); 12019566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)locX, "__Vec_bc_zero__", &isZero)); 120256cf3b9cSMatthew G. Knepley for (b = 0; b < numBd; ++b) { 120345480ffeSMatthew G. Knepley PetscWeakForm wf; 120456cf3b9cSMatthew G. Knepley DMBoundaryConditionType type; 120545480ffeSMatthew G. Knepley const char *name; 120656cf3b9cSMatthew G. Knepley DMLabel label; 120756cf3b9cSMatthew G. Knepley PetscInt field, Nc; 120856cf3b9cSMatthew G. Knepley const PetscInt *comps; 120956cf3b9cSMatthew G. Knepley PetscObject obj; 121056cf3b9cSMatthew G. Knepley PetscClassId id; 121156cf3b9cSMatthew G. Knepley PetscInt numids; 121256cf3b9cSMatthew G. Knepley const PetscInt *ids; 121345480ffeSMatthew G. Knepley void (*bvfunc)(void); 121456cf3b9cSMatthew G. Knepley void *ctx; 121556cf3b9cSMatthew G. Knepley 12169566063dSJacob Faibussowitsch PetscCall(PetscDSGetBoundary(prob, b, &wf, &type, &name, &label, &numids, &ids, &field, &Nc, &comps, NULL, &bvfunc, &ctx)); 121756cf3b9cSMatthew G. Knepley if (insertEssential != (type & DM_BC_ESSENTIAL)) continue; 12189566063dSJacob Faibussowitsch PetscCall(DMGetField(dm, field, NULL, &obj)); 12199566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 122056cf3b9cSMatthew G. Knepley if (id == PETSCFE_CLASSID) { 122156cf3b9cSMatthew G. Knepley switch (type) { 122256cf3b9cSMatthew G. Knepley /* for FEM, there is no insertion to be done for non-essential boundary conditions */ 12239371c9d4SSatish Balay case DM_BC_ESSENTIAL: { 12248434afd1SBarry Smith PetscSimplePointFn *func_t = (PetscSimplePointFn *)bvfunc; 122545480ffeSMatthew G. Knepley 122645480ffeSMatthew G. Knepley if (isZero) func_t = zero; 12279566063dSJacob Faibussowitsch PetscCall(DMPlexLabelAddCells(dm, label)); 12289566063dSJacob Faibussowitsch PetscCall(DMPlexInsertBoundaryValuesEssential(dm, time, field, Nc, comps, label, numids, ids, func_t, ctx, locX)); 12299566063dSJacob Faibussowitsch PetscCall(DMPlexLabelClearCells(dm, label)); 12309371c9d4SSatish Balay } break; 12319371c9d4SSatish Balay case DM_BC_ESSENTIAL_FIELD: { 123245480ffeSMatthew G. Knepley PetscPointFunc func_t = (PetscPointFunc)bvfunc; 123345480ffeSMatthew G. Knepley 12349566063dSJacob Faibussowitsch PetscCall(DMPlexLabelAddCells(dm, label)); 12359566063dSJacob Faibussowitsch PetscCall(DMPlexInsertBoundaryValuesEssentialField(dm, time, locX, field, Nc, comps, label, numids, ids, func_t, ctx, locX)); 12369566063dSJacob Faibussowitsch PetscCall(DMPlexLabelClearCells(dm, label)); 12379371c9d4SSatish Balay } break; 1238d71ae5a4SJacob Faibussowitsch default: 1239d71ae5a4SJacob Faibussowitsch break; 124056cf3b9cSMatthew G. Knepley } 124163a3b9bcSJacob Faibussowitsch } else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, field); 124256cf3b9cSMatthew G. Knepley } 12433ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 124456cf3b9cSMatthew G. Knepley } 124556cf3b9cSMatthew G. Knepley 1246f1d73a7aSMatthew G. Knepley /*@ 1247f1d73a7aSMatthew G. Knepley DMPlexInsertBoundaryValues - Puts coefficients which represent boundary values into the local solution vector 1248f1d73a7aSMatthew G. Knepley 1249ed808b8fSJed Brown Not Collective 1250ed808b8fSJed Brown 1251f1d73a7aSMatthew G. Knepley Input Parameters: 1252a1cb98faSBarry Smith + dm - The `DM` 1253f1d73a7aSMatthew G. Knepley . insertEssential - Should I insert essential (e.g. Dirichlet) or inessential (e.g. Neumann) boundary conditions 1254f1d73a7aSMatthew G. Knepley . time - The time 1255f1d73a7aSMatthew G. Knepley . faceGeomFVM - Face geometry data for FV discretizations 1256f1d73a7aSMatthew G. Knepley . cellGeomFVM - Cell geometry data for FV discretizations 1257f1d73a7aSMatthew G. Knepley - gradFVM - Gradient reconstruction data for FV discretizations 1258f1d73a7aSMatthew G. Knepley 12592fe279fdSBarry Smith Output Parameter: 1260f1d73a7aSMatthew G. Knepley . locX - Solution updated with boundary values 1261f1d73a7aSMatthew G. Knepley 1262ed808b8fSJed Brown Level: intermediate 1263f1d73a7aSMatthew G. Knepley 12641cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMProjectFunctionLabelLocal()`, `DMAddBoundary()` 1265f1d73a7aSMatthew G. Knepley @*/ 1266d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexInsertBoundaryValues(DM dm, PetscBool insertEssential, Vec locX, PetscReal time, Vec faceGeomFVM, Vec cellGeomFVM, Vec gradFVM) 1267d71ae5a4SJacob Faibussowitsch { 1268f1d73a7aSMatthew G. Knepley PetscFunctionBegin; 1269f1d73a7aSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 1270064a246eSJacob Faibussowitsch PetscValidHeaderSpecific(locX, VEC_CLASSID, 3); 1271ad540459SPierre Jolivet if (faceGeomFVM) PetscValidHeaderSpecific(faceGeomFVM, VEC_CLASSID, 5); 1272ad540459SPierre Jolivet if (cellGeomFVM) PetscValidHeaderSpecific(cellGeomFVM, VEC_CLASSID, 6); 1273ad540459SPierre Jolivet if (gradFVM) PetscValidHeaderSpecific(gradFVM, VEC_CLASSID, 7); 1274cac4c232SBarry Smith PetscTryMethod(dm, "DMPlexInsertBoundaryValues_C", (DM, PetscBool, Vec, PetscReal, Vec, Vec, Vec), (dm, insertEssential, locX, time, faceGeomFVM, cellGeomFVM, gradFVM)); 12753ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1276f1d73a7aSMatthew G. Knepley } 1277f1d73a7aSMatthew G. Knepley 127856cf3b9cSMatthew G. Knepley /*@ 1279a5b23f4aSJose E. Roman DMPlexInsertTimeDerivativeBoundaryValues - Puts coefficients which represent boundary values of the time derivative into the local solution vector 128056cf3b9cSMatthew G. Knepley 128156cf3b9cSMatthew G. Knepley Input Parameters: 1282a1cb98faSBarry Smith + dm - The `DM` 128356cf3b9cSMatthew G. Knepley . insertEssential - Should I insert essential (e.g. Dirichlet) or inessential (e.g. Neumann) boundary conditions 128456cf3b9cSMatthew G. Knepley . time - The time 128556cf3b9cSMatthew G. Knepley . faceGeomFVM - Face geometry data for FV discretizations 128656cf3b9cSMatthew G. Knepley . cellGeomFVM - Cell geometry data for FV discretizations 128756cf3b9cSMatthew G. Knepley - gradFVM - Gradient reconstruction data for FV discretizations 128856cf3b9cSMatthew G. Knepley 12892fe279fdSBarry Smith Output Parameter: 129056cf3b9cSMatthew G. Knepley . locX_t - Solution updated with boundary values 129156cf3b9cSMatthew G. Knepley 129256cf3b9cSMatthew G. Knepley Level: developer 129356cf3b9cSMatthew G. Knepley 12941cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMProjectFunctionLabelLocal()` 129556cf3b9cSMatthew G. Knepley @*/ 1296d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexInsertTimeDerivativeBoundaryValues(DM dm, PetscBool insertEssential, Vec locX_t, PetscReal time, Vec faceGeomFVM, Vec cellGeomFVM, Vec gradFVM) 1297d71ae5a4SJacob Faibussowitsch { 129856cf3b9cSMatthew G. Knepley PetscFunctionBegin; 129956cf3b9cSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 1300ad540459SPierre Jolivet if (locX_t) PetscValidHeaderSpecific(locX_t, VEC_CLASSID, 3); 1301ad540459SPierre Jolivet if (faceGeomFVM) PetscValidHeaderSpecific(faceGeomFVM, VEC_CLASSID, 5); 1302ad540459SPierre Jolivet if (cellGeomFVM) PetscValidHeaderSpecific(cellGeomFVM, VEC_CLASSID, 6); 1303ad540459SPierre Jolivet if (gradFVM) PetscValidHeaderSpecific(gradFVM, VEC_CLASSID, 7); 13046c51210dSStefano Zampini PetscTryMethod(dm, "DMPlexInsertTimeDerivativeBoundaryValues_C", (DM, PetscBool, Vec, PetscReal, Vec, Vec, Vec), (dm, insertEssential, locX_t, time, faceGeomFVM, cellGeomFVM, gradFVM)); 13053ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 130656cf3b9cSMatthew G. Knepley } 130756cf3b9cSMatthew G. Knepley 13085962854dSMatthew G. Knepley // Handle non-essential (e.g. outflow) boundary values 13095962854dSMatthew G. Knepley PetscErrorCode DMPlexInsertBoundaryValuesFVM(DM dm, PetscFV fv, Vec locX, PetscReal time, Vec *locGradient) 13105962854dSMatthew G. Knepley { 13115962854dSMatthew G. Knepley DM dmGrad; 13125962854dSMatthew G. Knepley Vec cellGeometryFVM, faceGeometryFVM, locGrad = NULL; 13135962854dSMatthew G. Knepley 13145962854dSMatthew G. Knepley PetscFunctionBegin; 13155962854dSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 13165962854dSMatthew G. Knepley PetscValidHeaderSpecific(fv, PETSCFV_CLASSID, 2); 13175962854dSMatthew G. Knepley PetscValidHeaderSpecific(locX, VEC_CLASSID, 3); 13185962854dSMatthew G. Knepley if (locGradient) { 13195962854dSMatthew G. Knepley PetscAssertPointer(locGradient, 5); 13205962854dSMatthew G. Knepley *locGradient = NULL; 13215962854dSMatthew G. Knepley } 13225962854dSMatthew G. Knepley PetscCall(DMPlexGetGeometryFVM(dm, &faceGeometryFVM, &cellGeometryFVM, NULL)); 13235962854dSMatthew G. Knepley /* Reconstruct and limit cell gradients */ 13245962854dSMatthew G. Knepley PetscCall(DMPlexGetGradientDM(dm, fv, &dmGrad)); 13255962854dSMatthew G. Knepley if (dmGrad) { 13265962854dSMatthew G. Knepley Vec grad; 13275962854dSMatthew G. Knepley PetscInt fStart, fEnd; 13285962854dSMatthew G. Knepley 13295962854dSMatthew G. Knepley PetscCall(DMPlexGetHeightStratum(dm, 1, &fStart, &fEnd)); 13305962854dSMatthew G. Knepley PetscCall(DMGetGlobalVector(dmGrad, &grad)); 13315962854dSMatthew G. Knepley PetscCall(DMPlexReconstructGradients_Internal(dm, fv, fStart, fEnd, faceGeometryFVM, cellGeometryFVM, locX, grad)); 13325962854dSMatthew G. Knepley /* Communicate gradient values */ 13335962854dSMatthew G. Knepley PetscCall(DMGetLocalVector(dmGrad, &locGrad)); 13345962854dSMatthew G. Knepley PetscCall(DMGlobalToLocalBegin(dmGrad, grad, INSERT_VALUES, locGrad)); 13355962854dSMatthew G. Knepley PetscCall(DMGlobalToLocalEnd(dmGrad, grad, INSERT_VALUES, locGrad)); 13365962854dSMatthew G. Knepley PetscCall(DMRestoreGlobalVector(dmGrad, &grad)); 13375962854dSMatthew G. Knepley } 13385962854dSMatthew G. Knepley PetscCall(DMPlexInsertBoundaryValues(dm, PETSC_FALSE, locX, time, faceGeometryFVM, cellGeometryFVM, locGrad)); 13395962854dSMatthew G. Knepley if (locGradient) *locGradient = locGrad; 13405962854dSMatthew G. Knepley else if (locGrad) PetscCall(DMRestoreLocalVector(dmGrad, &locGrad)); 13415962854dSMatthew G. Knepley PetscFunctionReturn(PETSC_SUCCESS); 13425962854dSMatthew G. Knepley } 13435962854dSMatthew G. Knepley 1344d71ae5a4SJacob Faibussowitsch PetscErrorCode DMComputeL2Diff_Plex(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal[], PetscInt, PetscScalar *, void *), void **ctxs, Vec X, PetscReal *diff) 1345d71ae5a4SJacob Faibussowitsch { 1346574a98acSMatthew G. Knepley Vec localX; 1347574a98acSMatthew G. Knepley 1348574a98acSMatthew G. Knepley PetscFunctionBegin; 13499566063dSJacob Faibussowitsch PetscCall(DMGetLocalVector(dm, &localX)); 13509566063dSJacob Faibussowitsch PetscCall(DMPlexInsertBoundaryValues(dm, PETSC_TRUE, localX, time, NULL, NULL, NULL)); 13519566063dSJacob Faibussowitsch PetscCall(DMGlobalToLocalBegin(dm, X, INSERT_VALUES, localX)); 13529566063dSJacob Faibussowitsch PetscCall(DMGlobalToLocalEnd(dm, X, INSERT_VALUES, localX)); 13539566063dSJacob Faibussowitsch PetscCall(DMPlexComputeL2DiffLocal(dm, time, funcs, ctxs, localX, diff)); 13549566063dSJacob Faibussowitsch PetscCall(DMRestoreLocalVector(dm, &localX)); 13553ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1356574a98acSMatthew G. Knepley } 1357574a98acSMatthew G. Knepley 1358574a98acSMatthew G. Knepley /*@C 135960225df5SJacob Faibussowitsch DMPlexComputeL2DiffLocal - This function computes the L_2 difference between a function u and an FEM interpolant solution u_h. 1360574a98acSMatthew G. Knepley 136120f4b53cSBarry Smith Collective 1362c0f8e1fdSMatthew G. Knepley 1363574a98acSMatthew G. Knepley Input Parameters: 1364a1cb98faSBarry Smith + dm - The `DM` 1365574a98acSMatthew G. Knepley . time - The time 1366574a98acSMatthew G. Knepley . funcs - The functions to evaluate for each field component 136720f4b53cSBarry Smith . ctxs - Optional array of contexts to pass to each function, or `NULL`. 1368574a98acSMatthew G. Knepley - localX - The coefficient vector u_h, a local vector 1369574a98acSMatthew G. Knepley 1370574a98acSMatthew G. Knepley Output Parameter: 1371574a98acSMatthew G. Knepley . diff - The diff ||u - u_h||_2 1372574a98acSMatthew G. Knepley 1373574a98acSMatthew G. Knepley Level: developer 1374574a98acSMatthew G. Knepley 13751cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMProjectFunction()`, `DMComputeL2FieldDiff()`, `DMComputeL2GradientDiff()` 1376574a98acSMatthew G. Knepley @*/ 1377d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeL2DiffLocal(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal[], PetscInt, PetscScalar *, void *), void **ctxs, Vec localX, PetscReal *diff) 1378d71ae5a4SJacob Faibussowitsch { 13790f09c10fSMatthew G. Knepley const PetscInt debug = ((DM_Plex *)dm->data)->printL2; 1380ca3d3a14SMatthew G. Knepley DM tdm; 1381ca3d3a14SMatthew G. Knepley Vec tv; 1382cb1e1211SMatthew G Knepley PetscSection section; 1383c5bbbd5bSMatthew G. Knepley PetscQuadrature quad; 13844bee2e38SMatthew G. Knepley PetscFEGeom fegeom; 138515496722SMatthew G. Knepley PetscScalar *funcVal, *interpolant; 13864bee2e38SMatthew G. Knepley PetscReal *coords, *gcoords; 1387cb1e1211SMatthew G Knepley PetscReal localDiff = 0.0; 13887318780aSToby Isaac const PetscReal *quadWeights; 1389412e9a14SMatthew G. Knepley PetscInt dim, coordDim, numFields, numComponents = 0, qNc, Nq, cellHeight, cStart, cEnd, c, field, fieldOffset; 1390ca3d3a14SMatthew G. Knepley PetscBool transform; 1391cb1e1211SMatthew G Knepley 1392cb1e1211SMatthew G Knepley PetscFunctionBegin; 13939566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 13949566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDim(dm, &coordDim)); 13952a4e142eSMatthew G. Knepley fegeom.dimEmbed = coordDim; 13969566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, §ion)); 13979566063dSJacob Faibussowitsch PetscCall(PetscSectionGetNumFields(section, &numFields)); 13989566063dSJacob Faibussowitsch PetscCall(DMGetBasisTransformDM_Internal(dm, &tdm)); 13999566063dSJacob Faibussowitsch PetscCall(DMGetBasisTransformVec_Internal(dm, &tv)); 14009566063dSJacob Faibussowitsch PetscCall(DMHasBasisTransform(dm, &transform)); 1401eae3dc7dSJacob Faibussowitsch PetscCheck(numFields, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of fields is zero!"); 1402cb1e1211SMatthew G Knepley for (field = 0; field < numFields; ++field) { 140315496722SMatthew G. Knepley PetscObject obj; 140415496722SMatthew G. Knepley PetscClassId id; 1405c5bbbd5bSMatthew G. Knepley PetscInt Nc; 1406c5bbbd5bSMatthew G. Knepley 14079566063dSJacob Faibussowitsch PetscCall(DMGetField(dm, field, NULL, &obj)); 14089566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 140915496722SMatthew G. Knepley if (id == PETSCFE_CLASSID) { 141015496722SMatthew G. Knepley PetscFE fe = (PetscFE)obj; 141115496722SMatthew G. Knepley 14129566063dSJacob Faibussowitsch PetscCall(PetscFEGetQuadrature(fe, &quad)); 14139566063dSJacob Faibussowitsch PetscCall(PetscFEGetNumComponents(fe, &Nc)); 141415496722SMatthew G. Knepley } else if (id == PETSCFV_CLASSID) { 141515496722SMatthew G. Knepley PetscFV fv = (PetscFV)obj; 141615496722SMatthew G. Knepley 14179566063dSJacob Faibussowitsch PetscCall(PetscFVGetQuadrature(fv, &quad)); 14189566063dSJacob Faibussowitsch PetscCall(PetscFVGetNumComponents(fv, &Nc)); 141963a3b9bcSJacob Faibussowitsch } else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, field); 1420c5bbbd5bSMatthew G. Knepley numComponents += Nc; 1421cb1e1211SMatthew G Knepley } 14229566063dSJacob Faibussowitsch PetscCall(PetscQuadratureGetData(quad, NULL, &qNc, &Nq, NULL, &quadWeights)); 142363a3b9bcSJacob Faibussowitsch PetscCheck(!(qNc != 1) || !(qNc != numComponents), PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_SIZ, "Quadrature components %" PetscInt_FMT " != %" PetscInt_FMT " field components", qNc, numComponents); 1424c9cb6370SYANG Zongze PetscCall(PetscMalloc6(numComponents, &funcVal, numComponents, &interpolant, coordDim * (Nq + 1), &coords, Nq, &fegeom.detJ, coordDim * coordDim * Nq, &fegeom.J, coordDim * coordDim * Nq, &fegeom.invJ)); 14259566063dSJacob Faibussowitsch PetscCall(DMPlexGetVTKCellHeight(dm, &cellHeight)); 14269566063dSJacob Faibussowitsch PetscCall(DMPlexGetSimplexOrBoxCells(dm, cellHeight, &cStart, &cEnd)); 1427cb1e1211SMatthew G Knepley for (c = cStart; c < cEnd; ++c) { 1428a1e44745SMatthew G. Knepley PetscScalar *x = NULL; 1429cb1e1211SMatthew G Knepley PetscReal elemDiff = 0.0; 14309c3cf19fSMatthew G. Knepley PetscInt qc = 0; 1431cb1e1211SMatthew G Knepley 14329566063dSJacob Faibussowitsch PetscCall(DMPlexComputeCellGeometryFEM(dm, c, quad, coords, fegeom.J, fegeom.invJ, fegeom.detJ)); 1433e8e188d2SZach Atkins PetscCall(DMPlexVecGetOrientedClosure_Internal(dm, NULL, PETSC_FALSE, localX, c, 0, NULL, &x)); 1434cb1e1211SMatthew G Knepley 143515496722SMatthew G. Knepley for (field = 0, fieldOffset = 0; field < numFields; ++field) { 143615496722SMatthew G. Knepley PetscObject obj; 143715496722SMatthew G. Knepley PetscClassId id; 1438c110b1eeSGeoffrey Irving void *const ctx = ctxs ? ctxs[field] : NULL; 143915496722SMatthew G. Knepley PetscInt Nb, Nc, q, fc; 1440cb1e1211SMatthew G Knepley 14419566063dSJacob Faibussowitsch PetscCall(DMGetField(dm, field, NULL, &obj)); 14429566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 14439371c9d4SSatish Balay if (id == PETSCFE_CLASSID) { 14449371c9d4SSatish Balay PetscCall(PetscFEGetNumComponents((PetscFE)obj, &Nc)); 14459371c9d4SSatish Balay PetscCall(PetscFEGetDimension((PetscFE)obj, &Nb)); 14469371c9d4SSatish Balay } else if (id == PETSCFV_CLASSID) { 14479371c9d4SSatish Balay PetscCall(PetscFVGetNumComponents((PetscFV)obj, &Nc)); 14489371c9d4SSatish Balay Nb = 1; 14499371c9d4SSatish Balay } else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, field); 1450cb1e1211SMatthew G Knepley if (debug) { 1451cb1e1211SMatthew G Knepley char title[1024]; 145263a3b9bcSJacob Faibussowitsch PetscCall(PetscSNPrintf(title, 1023, "Solution for Field %" PetscInt_FMT, field)); 14539566063dSJacob Faibussowitsch PetscCall(DMPrintCellVector(c, title, Nb, &x[fieldOffset])); 1454cb1e1211SMatthew G Knepley } 14557318780aSToby Isaac for (q = 0; q < Nq; ++q) { 14562a4e142eSMatthew G. Knepley PetscFEGeom qgeom; 1457d0609cedSBarry Smith PetscErrorCode ierr; 14582a4e142eSMatthew G. Knepley 14592a4e142eSMatthew G. Knepley qgeom.dimEmbed = fegeom.dimEmbed; 14602a4e142eSMatthew G. Knepley qgeom.J = &fegeom.J[q * coordDim * coordDim]; 14612a4e142eSMatthew G. Knepley qgeom.invJ = &fegeom.invJ[q * coordDim * coordDim]; 14622a4e142eSMatthew G. Knepley qgeom.detJ = &fegeom.detJ[q]; 146363a3b9bcSJacob Faibussowitsch PetscCheck(fegeom.detJ[q] > 0.0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Invalid determinant %g for element %" PetscInt_FMT ", point %" PetscInt_FMT, (double)fegeom.detJ[q], c, q); 1464d3a7d86cSMatthew G. Knepley if (transform) { 1465d3a7d86cSMatthew G. Knepley gcoords = &coords[coordDim * Nq]; 14669566063dSJacob Faibussowitsch PetscCall(DMPlexBasisTransformApplyReal_Internal(dm, &coords[coordDim * q], PETSC_TRUE, coordDim, &coords[coordDim * q], gcoords, dm->transformCtx)); 1467d3a7d86cSMatthew G. Knepley } else { 1468d3a7d86cSMatthew G. Knepley gcoords = &coords[coordDim * q]; 1469d3a7d86cSMatthew G. Knepley } 14709566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(funcVal, Nc)); 1471ca3d3a14SMatthew G. Knepley ierr = (*funcs[field])(coordDim, time, gcoords, Nc, funcVal, ctx); 1472e735a8a9SMatthew G. Knepley if (ierr) { 14739566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(dm, NULL, localX, c, NULL, &x)); 14749566063dSJacob Faibussowitsch PetscCall(DMRestoreLocalVector(dm, &localX)); 14759566063dSJacob Faibussowitsch PetscCall(PetscFree6(funcVal, interpolant, coords, fegeom.detJ, fegeom.J, fegeom.invJ)); 1476e735a8a9SMatthew G. Knepley } 14779566063dSJacob Faibussowitsch if (transform) PetscCall(DMPlexBasisTransformApply_Internal(dm, &coords[coordDim * q], PETSC_FALSE, Nc, funcVal, funcVal, dm->transformCtx)); 14789566063dSJacob Faibussowitsch if (id == PETSCFE_CLASSID) PetscCall(PetscFEInterpolate_Static((PetscFE)obj, &x[fieldOffset], &qgeom, q, interpolant)); 14799566063dSJacob Faibussowitsch else if (id == PETSCFV_CLASSID) PetscCall(PetscFVInterpolate_Static((PetscFV)obj, &x[fieldOffset], q, interpolant)); 14802df84da0SMatthew G. Knepley else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, field); 148115496722SMatthew G. Knepley for (fc = 0; fc < Nc; ++fc) { 1482beaa55a6SMatthew G. Knepley const PetscReal wt = quadWeights[q * qNc + (qNc == 1 ? 0 : qc + fc)]; 14839371c9d4SSatish Balay if (debug) 14849371c9d4SSatish Balay PetscCall(PetscPrintf(PETSC_COMM_SELF, " elem %" PetscInt_FMT " field %" PetscInt_FMT ",%" PetscInt_FMT " point %g %g %g diff %g (%g, %g)\n", c, field, fc, (double)(coordDim > 0 ? coords[coordDim * q] : 0.), (double)(coordDim > 1 ? coords[coordDim * q + 1] : 0.), (double)(coordDim > 2 ? coords[coordDim * q + 2] : 0.), 14859371c9d4SSatish Balay (double)(PetscSqr(PetscRealPart(interpolant[fc] - funcVal[fc])) * wt * fegeom.detJ[q]), (double)PetscRealPart(interpolant[fc]), (double)PetscRealPart(funcVal[fc]))); 14864bee2e38SMatthew G. Knepley elemDiff += PetscSqr(PetscRealPart(interpolant[fc] - funcVal[fc])) * wt * fegeom.detJ[q]; 1487cb1e1211SMatthew G Knepley } 1488cb1e1211SMatthew G Knepley } 14899c3cf19fSMatthew G. Knepley fieldOffset += Nb; 1490beaa55a6SMatthew G. Knepley qc += Nc; 1491cb1e1211SMatthew G Knepley } 14929566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(dm, NULL, localX, c, NULL, &x)); 14939566063dSJacob Faibussowitsch if (debug) PetscCall(PetscPrintf(PETSC_COMM_SELF, " elem %" PetscInt_FMT " diff %g\n", c, (double)elemDiff)); 1494cb1e1211SMatthew G Knepley localDiff += elemDiff; 1495cb1e1211SMatthew G Knepley } 14969566063dSJacob Faibussowitsch PetscCall(PetscFree6(funcVal, interpolant, coords, fegeom.detJ, fegeom.J, fegeom.invJ)); 14971c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&localDiff, diff, 1, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)dm))); 1498cb1e1211SMatthew G Knepley *diff = PetscSqrtReal(*diff); 14993ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1500cb1e1211SMatthew G Knepley } 1501cb1e1211SMatthew G Knepley 1502d71ae5a4SJacob Faibussowitsch PetscErrorCode DMComputeL2GradientDiff_Plex(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal[], const PetscReal[], PetscInt, PetscScalar *, void *), void **ctxs, Vec X, const PetscReal n[], PetscReal *diff) 1503d71ae5a4SJacob Faibussowitsch { 15040f09c10fSMatthew G. Knepley const PetscInt debug = ((DM_Plex *)dm->data)->printL2; 1505ca3d3a14SMatthew G. Knepley DM tdm; 1506cb1e1211SMatthew G Knepley PetscSection section; 150740e14135SMatthew G. Knepley PetscQuadrature quad; 1508ca3d3a14SMatthew G. Knepley Vec localX, tv; 15099c3cf19fSMatthew G. Knepley PetscScalar *funcVal, *interpolant; 15102a4e142eSMatthew G. Knepley const PetscReal *quadWeights; 15114bee2e38SMatthew G. Knepley PetscFEGeom fegeom; 15124bee2e38SMatthew G. Knepley PetscReal *coords, *gcoords; 151340e14135SMatthew G. Knepley PetscReal localDiff = 0.0; 1514485ad865SMatthew G. Knepley PetscInt dim, coordDim, qNc = 0, Nq = 0, numFields, numComponents = 0, cStart, cEnd, c, field, fieldOffset; 1515ca3d3a14SMatthew G. Knepley PetscBool transform; 1516cb1e1211SMatthew G Knepley 1517cb1e1211SMatthew G Knepley PetscFunctionBegin; 15189566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 15199566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDim(dm, &coordDim)); 15204bee2e38SMatthew G. Knepley fegeom.dimEmbed = coordDim; 15219566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, §ion)); 15229566063dSJacob Faibussowitsch PetscCall(PetscSectionGetNumFields(section, &numFields)); 15239566063dSJacob Faibussowitsch PetscCall(DMGetLocalVector(dm, &localX)); 15249566063dSJacob Faibussowitsch PetscCall(DMGlobalToLocalBegin(dm, X, INSERT_VALUES, localX)); 15259566063dSJacob Faibussowitsch PetscCall(DMGlobalToLocalEnd(dm, X, INSERT_VALUES, localX)); 15269566063dSJacob Faibussowitsch PetscCall(DMGetBasisTransformDM_Internal(dm, &tdm)); 15279566063dSJacob Faibussowitsch PetscCall(DMGetBasisTransformVec_Internal(dm, &tv)); 15289566063dSJacob Faibussowitsch PetscCall(DMHasBasisTransform(dm, &transform)); 1529652b88e8SMatthew G. Knepley for (field = 0; field < numFields; ++field) { 15300f2d7e86SMatthew G. Knepley PetscFE fe; 153140e14135SMatthew G. Knepley PetscInt Nc; 1532652b88e8SMatthew G. Knepley 15339566063dSJacob Faibussowitsch PetscCall(DMGetField(dm, field, NULL, (PetscObject *)&fe)); 15349566063dSJacob Faibussowitsch PetscCall(PetscFEGetQuadrature(fe, &quad)); 15359566063dSJacob Faibussowitsch PetscCall(PetscFEGetNumComponents(fe, &Nc)); 153640e14135SMatthew G. Knepley numComponents += Nc; 1537652b88e8SMatthew G. Knepley } 15389566063dSJacob Faibussowitsch PetscCall(PetscQuadratureGetData(quad, NULL, &qNc, &Nq, NULL, &quadWeights)); 153963a3b9bcSJacob Faibussowitsch PetscCheck(!(qNc != 1) || !(qNc != numComponents), PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_SIZ, "Quadrature components %" PetscInt_FMT " != %" PetscInt_FMT " field components", qNc, numComponents); 15409566063dSJacob Faibussowitsch /* PetscCall(DMProjectFunctionLocal(dm, fe, funcs, INSERT_BC_VALUES, localX)); */ 1541c9cb6370SYANG Zongze PetscCall(PetscMalloc6(numComponents, &funcVal, coordDim * (Nq + 1), &coords, coordDim * coordDim * Nq, &fegeom.J, coordDim * coordDim * Nq, &fegeom.invJ, numComponents * coordDim, &interpolant, Nq, &fegeom.detJ)); 15429566063dSJacob Faibussowitsch PetscCall(DMPlexGetSimplexOrBoxCells(dm, 0, &cStart, &cEnd)); 154340e14135SMatthew G. Knepley for (c = cStart; c < cEnd; ++c) { 154440e14135SMatthew G. Knepley PetscScalar *x = NULL; 154540e14135SMatthew G. Knepley PetscReal elemDiff = 0.0; 15469c3cf19fSMatthew G. Knepley PetscInt qc = 0; 1547652b88e8SMatthew G. Knepley 15489566063dSJacob Faibussowitsch PetscCall(DMPlexComputeCellGeometryFEM(dm, c, quad, coords, fegeom.J, fegeom.invJ, fegeom.detJ)); 1549e8e188d2SZach Atkins PetscCall(DMPlexVecGetOrientedClosure_Internal(dm, NULL, PETSC_FALSE, localX, c, 0, NULL, &x)); 155040e14135SMatthew G. Knepley 15519c3cf19fSMatthew G. Knepley for (field = 0, fieldOffset = 0; field < numFields; ++field) { 15520f2d7e86SMatthew G. Knepley PetscFE fe; 155351259fa3SMatthew G. Knepley void *const ctx = ctxs ? ctxs[field] : NULL; 15549c3cf19fSMatthew G. Knepley PetscInt Nb, Nc, q, fc; 155540e14135SMatthew G. Knepley 15569566063dSJacob Faibussowitsch PetscCall(DMGetField(dm, field, NULL, (PetscObject *)&fe)); 15579566063dSJacob Faibussowitsch PetscCall(PetscFEGetDimension(fe, &Nb)); 15589566063dSJacob Faibussowitsch PetscCall(PetscFEGetNumComponents(fe, &Nc)); 155940e14135SMatthew G. Knepley if (debug) { 156040e14135SMatthew G. Knepley char title[1024]; 15619566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(title, 1023, "Solution for Field %" PetscInt_FMT, field)); 15629566063dSJacob Faibussowitsch PetscCall(DMPrintCellVector(c, title, Nb, &x[fieldOffset])); 1563652b88e8SMatthew G. Knepley } 15649c3cf19fSMatthew G. Knepley for (q = 0; q < Nq; ++q) { 15652a4e142eSMatthew G. Knepley PetscFEGeom qgeom; 1566d0609cedSBarry Smith PetscErrorCode ierr; 15672a4e142eSMatthew G. Knepley 15682a4e142eSMatthew G. Knepley qgeom.dimEmbed = fegeom.dimEmbed; 15692a4e142eSMatthew G. Knepley qgeom.J = &fegeom.J[q * coordDim * coordDim]; 15702a4e142eSMatthew G. Knepley qgeom.invJ = &fegeom.invJ[q * coordDim * coordDim]; 15712a4e142eSMatthew G. Knepley qgeom.detJ = &fegeom.detJ[q]; 15722df84da0SMatthew G. Knepley PetscCheck(fegeom.detJ[q] > 0.0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Invalid determinant %g for element %" PetscInt_FMT ", quadrature points %" PetscInt_FMT, (double)fegeom.detJ[q], c, q); 1573d3a7d86cSMatthew G. Knepley if (transform) { 1574d3a7d86cSMatthew G. Knepley gcoords = &coords[coordDim * Nq]; 15759566063dSJacob Faibussowitsch PetscCall(DMPlexBasisTransformApplyReal_Internal(dm, &coords[coordDim * q], PETSC_TRUE, coordDim, &coords[coordDim * q], gcoords, dm->transformCtx)); 1576d3a7d86cSMatthew G. Knepley } else { 1577d3a7d86cSMatthew G. Knepley gcoords = &coords[coordDim * q]; 1578d3a7d86cSMatthew G. Knepley } 15799566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(funcVal, Nc)); 15804bee2e38SMatthew G. Knepley ierr = (*funcs[field])(coordDim, time, gcoords, n, Nc, funcVal, ctx); 1581e735a8a9SMatthew G. Knepley if (ierr) { 15829566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(dm, NULL, localX, c, NULL, &x)); 15839566063dSJacob Faibussowitsch PetscCall(DMRestoreLocalVector(dm, &localX)); 15849566063dSJacob Faibussowitsch PetscCall(PetscFree6(funcVal, coords, fegeom.J, fegeom.invJ, interpolant, fegeom.detJ)); 1585e735a8a9SMatthew G. Knepley } 15869566063dSJacob Faibussowitsch if (transform) PetscCall(DMPlexBasisTransformApply_Internal(dm, &coords[coordDim * q], PETSC_FALSE, Nc, funcVal, funcVal, dm->transformCtx)); 15879566063dSJacob Faibussowitsch PetscCall(PetscFEInterpolateGradient_Static(fe, 1, &x[fieldOffset], &qgeom, q, interpolant)); 15884bee2e38SMatthew G. Knepley /* Overwrite with the dot product if the normal is given */ 15894bee2e38SMatthew G. Knepley if (n) { 15904bee2e38SMatthew G. Knepley for (fc = 0; fc < Nc; ++fc) { 15914bee2e38SMatthew G. Knepley PetscScalar sum = 0.0; 15924bee2e38SMatthew G. Knepley PetscInt d; 15934bee2e38SMatthew G. Knepley for (d = 0; d < dim; ++d) sum += interpolant[fc * dim + d] * n[d]; 15944bee2e38SMatthew G. Knepley interpolant[fc] = sum; 15954bee2e38SMatthew G. Knepley } 15964bee2e38SMatthew G. Knepley } 15979c3cf19fSMatthew G. Knepley for (fc = 0; fc < Nc; ++fc) { 1598beaa55a6SMatthew G. Knepley const PetscReal wt = quadWeights[q * qNc + (qNc == 1 ? 0 : qc + fc)]; 159963a3b9bcSJacob Faibussowitsch if (debug) PetscCall(PetscPrintf(PETSC_COMM_SELF, " elem %" PetscInt_FMT " fieldDer %" PetscInt_FMT ",%" PetscInt_FMT " diff %g\n", c, field, fc, (double)(PetscSqr(PetscRealPart(interpolant[fc] - funcVal[fc])) * wt * fegeom.detJ[q]))); 16004bee2e38SMatthew G. Knepley elemDiff += PetscSqr(PetscRealPart(interpolant[fc] - funcVal[fc])) * wt * fegeom.detJ[q]; 160140e14135SMatthew G. Knepley } 160240e14135SMatthew G. Knepley } 16039c3cf19fSMatthew G. Knepley fieldOffset += Nb; 16049c3cf19fSMatthew G. Knepley qc += Nc; 160540e14135SMatthew G. Knepley } 16069566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(dm, NULL, localX, c, NULL, &x)); 160763a3b9bcSJacob Faibussowitsch if (debug) PetscCall(PetscPrintf(PETSC_COMM_SELF, " elem %" PetscInt_FMT " diff %g\n", c, (double)elemDiff)); 160840e14135SMatthew G. Knepley localDiff += elemDiff; 160940e14135SMatthew G. Knepley } 16109566063dSJacob Faibussowitsch PetscCall(PetscFree6(funcVal, coords, fegeom.J, fegeom.invJ, interpolant, fegeom.detJ)); 16119566063dSJacob Faibussowitsch PetscCall(DMRestoreLocalVector(dm, &localX)); 16121c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&localDiff, diff, 1, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)dm))); 161340e14135SMatthew G. Knepley *diff = PetscSqrtReal(*diff); 16143ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1615cb1e1211SMatthew G Knepley } 1616cb1e1211SMatthew G Knepley 1617d71ae5a4SJacob Faibussowitsch PetscErrorCode DMComputeL2FieldDiff_Plex(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal[], PetscInt, PetscScalar *, void *), void **ctxs, Vec X, PetscReal *diff) 1618d71ae5a4SJacob Faibussowitsch { 16190f09c10fSMatthew G. Knepley const PetscInt debug = ((DM_Plex *)dm->data)->printL2; 1620ca3d3a14SMatthew G. Knepley DM tdm; 1621083401c6SMatthew G. Knepley DMLabel depthLabel; 162273d901b8SMatthew G. Knepley PetscSection section; 1623ca3d3a14SMatthew G. Knepley Vec localX, tv; 162473d901b8SMatthew G. Knepley PetscReal *localDiff; 1625083401c6SMatthew G. Knepley PetscInt dim, depth, dE, Nf, f, Nds, s; 1626ca3d3a14SMatthew G. Knepley PetscBool transform; 162773d901b8SMatthew G. Knepley 162873d901b8SMatthew G. Knepley PetscFunctionBegin; 16299566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 16309566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDim(dm, &dE)); 16319566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, §ion)); 16329566063dSJacob Faibussowitsch PetscCall(DMGetLocalVector(dm, &localX)); 16339566063dSJacob Faibussowitsch PetscCall(DMGetBasisTransformDM_Internal(dm, &tdm)); 16349566063dSJacob Faibussowitsch PetscCall(DMGetBasisTransformVec_Internal(dm, &tv)); 16359566063dSJacob Faibussowitsch PetscCall(DMHasBasisTransform(dm, &transform)); 16369566063dSJacob Faibussowitsch PetscCall(DMGetNumFields(dm, &Nf)); 16379566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthLabel(dm, &depthLabel)); 16389566063dSJacob Faibussowitsch PetscCall(DMLabelGetNumValues(depthLabel, &depth)); 1639083401c6SMatthew G. Knepley 16409566063dSJacob Faibussowitsch PetscCall(VecSet(localX, 0.0)); 16419566063dSJacob Faibussowitsch PetscCall(DMGlobalToLocalBegin(dm, X, INSERT_VALUES, localX)); 16429566063dSJacob Faibussowitsch PetscCall(DMGlobalToLocalEnd(dm, X, INSERT_VALUES, localX)); 16439566063dSJacob Faibussowitsch PetscCall(DMProjectFunctionLocal(dm, time, funcs, ctxs, INSERT_BC_VALUES, localX)); 16449566063dSJacob Faibussowitsch PetscCall(DMGetNumDS(dm, &Nds)); 16459566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(Nf, &localDiff)); 1646083401c6SMatthew G. Knepley for (s = 0; s < Nds; ++s) { 1647083401c6SMatthew G. Knepley PetscDS ds; 1648083401c6SMatthew G. Knepley DMLabel label; 1649083401c6SMatthew G. Knepley IS fieldIS, pointIS; 1650083401c6SMatthew G. Knepley const PetscInt *fields, *points = NULL; 1651083401c6SMatthew G. Knepley PetscQuadrature quad; 1652083401c6SMatthew G. Knepley const PetscReal *quadPoints, *quadWeights; 1653083401c6SMatthew G. Knepley PetscFEGeom fegeom; 1654083401c6SMatthew G. Knepley PetscReal *coords, *gcoords; 1655083401c6SMatthew G. Knepley PetscScalar *funcVal, *interpolant; 16565fedec97SMatthew G. Knepley PetscBool isCohesive; 1657083401c6SMatthew G. Knepley PetscInt qNc, Nq, totNc, cStart = 0, cEnd, c, dsNf; 165873d901b8SMatthew G. Knepley 165907218a29SMatthew G. Knepley PetscCall(DMGetRegionNumDS(dm, s, &label, &fieldIS, &ds, NULL)); 16609566063dSJacob Faibussowitsch PetscCall(ISGetIndices(fieldIS, &fields)); 16619566063dSJacob Faibussowitsch PetscCall(PetscDSIsCohesive(ds, &isCohesive)); 16629566063dSJacob Faibussowitsch PetscCall(PetscDSGetNumFields(ds, &dsNf)); 16639566063dSJacob Faibussowitsch PetscCall(PetscDSGetTotalComponents(ds, &totNc)); 16649566063dSJacob Faibussowitsch PetscCall(PetscDSGetQuadrature(ds, &quad)); 16659566063dSJacob Faibussowitsch PetscCall(PetscQuadratureGetData(quad, NULL, &qNc, &Nq, &quadPoints, &quadWeights)); 166663a3b9bcSJacob Faibussowitsch PetscCheck(!(qNc != 1) || !(qNc != totNc), PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Quadrature components %" PetscInt_FMT " != %" PetscInt_FMT " field components", qNc, totNc); 16679566063dSJacob Faibussowitsch PetscCall(PetscCalloc6(totNc, &funcVal, totNc, &interpolant, dE * (Nq + 1), &coords, Nq, &fegeom.detJ, dE * dE * Nq, &fegeom.J, dE * dE * Nq, &fegeom.invJ)); 1668083401c6SMatthew G. Knepley if (!label) { 16699566063dSJacob Faibussowitsch PetscCall(DMPlexGetSimplexOrBoxCells(dm, 0, &cStart, &cEnd)); 1670083401c6SMatthew G. Knepley } else { 16719566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(label, 1, &pointIS)); 16729566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(pointIS, &cEnd)); 16739566063dSJacob Faibussowitsch PetscCall(ISGetIndices(pointIS, &points)); 1674083401c6SMatthew G. Knepley } 167573d901b8SMatthew G. Knepley for (c = cStart; c < cEnd; ++c) { 1676083401c6SMatthew G. Knepley const PetscInt cell = points ? points[c] : c; 167773d901b8SMatthew G. Knepley PetscScalar *x = NULL; 16785fedec97SMatthew G. Knepley const PetscInt *cone; 16795fedec97SMatthew G. Knepley PetscInt qc = 0, fOff = 0, dep; 168073d901b8SMatthew G. Knepley 16819566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(depthLabel, cell, &dep)); 1682083401c6SMatthew G. Knepley if (dep != depth - 1) continue; 16835fedec97SMatthew G. Knepley if (isCohesive) { 16849566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, cell, &cone)); 16859566063dSJacob Faibussowitsch PetscCall(DMPlexComputeCellGeometryFEM(dm, cone[0], quad, coords, fegeom.J, fegeom.invJ, fegeom.detJ)); 168696959cd1SMatthew G. Knepley } else { 16879566063dSJacob Faibussowitsch PetscCall(DMPlexComputeCellGeometryFEM(dm, cell, quad, coords, fegeom.J, fegeom.invJ, fegeom.detJ)); 168896959cd1SMatthew G. Knepley } 1689e8e188d2SZach Atkins PetscCall(DMPlexVecGetOrientedClosure_Internal(dm, NULL, PETSC_FALSE, localX, cell, 0, NULL, &x)); 16905fedec97SMatthew G. Knepley for (f = 0; f < dsNf; ++f) { 169115496722SMatthew G. Knepley PetscObject obj; 169215496722SMatthew G. Knepley PetscClassId id; 1693083401c6SMatthew G. Knepley void *const ctx = ctxs ? ctxs[fields[f]] : NULL; 169415496722SMatthew G. Knepley PetscInt Nb, Nc, q, fc; 169515496722SMatthew G. Knepley PetscReal elemDiff = 0.0; 16965fedec97SMatthew G. Knepley PetscBool cohesive; 169715496722SMatthew G. Knepley 16989566063dSJacob Faibussowitsch PetscCall(PetscDSGetCohesive(ds, f, &cohesive)); 16999566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(ds, f, &obj)); 17009566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 17019371c9d4SSatish Balay if (id == PETSCFE_CLASSID) { 17029371c9d4SSatish Balay PetscCall(PetscFEGetNumComponents((PetscFE)obj, &Nc)); 17039371c9d4SSatish Balay PetscCall(PetscFEGetDimension((PetscFE)obj, &Nb)); 17049371c9d4SSatish Balay } else if (id == PETSCFV_CLASSID) { 17059371c9d4SSatish Balay PetscCall(PetscFVGetNumComponents((PetscFV)obj, &Nc)); 17069371c9d4SSatish Balay Nb = 1; 17079371c9d4SSatish Balay } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, fields[f]); 1708c82db6dbSMatthew G. Knepley if (isCohesive && !cohesive) { 1709c82db6dbSMatthew G. Knepley fOff += Nb * 2; 1710c82db6dbSMatthew G. Knepley qc += Nc; 1711c82db6dbSMatthew G. Knepley continue; 1712c82db6dbSMatthew G. Knepley } 171373d901b8SMatthew G. Knepley if (debug) { 171473d901b8SMatthew G. Knepley char title[1024]; 171563a3b9bcSJacob Faibussowitsch PetscCall(PetscSNPrintf(title, 1023, "Solution for Field %" PetscInt_FMT, fields[f])); 17169566063dSJacob Faibussowitsch PetscCall(DMPrintCellVector(cell, title, Nb, &x[fOff])); 171773d901b8SMatthew G. Knepley } 17187318780aSToby Isaac for (q = 0; q < Nq; ++q) { 17192a4e142eSMatthew G. Knepley PetscFEGeom qgeom; 1720d0609cedSBarry Smith PetscErrorCode ierr; 17212a4e142eSMatthew G. Knepley 17222a4e142eSMatthew G. Knepley qgeom.dimEmbed = fegeom.dimEmbed; 1723083401c6SMatthew G. Knepley qgeom.J = &fegeom.J[q * dE * dE]; 1724083401c6SMatthew G. Knepley qgeom.invJ = &fegeom.invJ[q * dE * dE]; 17252a4e142eSMatthew G. Knepley qgeom.detJ = &fegeom.detJ[q]; 172663a3b9bcSJacob Faibussowitsch PetscCheck(fegeom.detJ[q] > 0.0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Invalid determinant %g for cell %" PetscInt_FMT ", quadrature point %" PetscInt_FMT, (double)fegeom.detJ[q], cell, q); 1727d3a7d86cSMatthew G. Knepley if (transform) { 1728083401c6SMatthew G. Knepley gcoords = &coords[dE * Nq]; 17299566063dSJacob Faibussowitsch PetscCall(DMPlexBasisTransformApplyReal_Internal(dm, &coords[dE * q], PETSC_TRUE, dE, &coords[dE * q], gcoords, dm->transformCtx)); 1730d3a7d86cSMatthew G. Knepley } else { 1731083401c6SMatthew G. Knepley gcoords = &coords[dE * q]; 1732d3a7d86cSMatthew G. Knepley } 17332df84da0SMatthew G. Knepley for (fc = 0; fc < Nc; ++fc) funcVal[fc] = 0.; 1734083401c6SMatthew G. Knepley ierr = (*funcs[fields[f]])(dE, time, gcoords, Nc, funcVal, ctx); 1735e735a8a9SMatthew G. Knepley if (ierr) { 17369566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(dm, NULL, localX, cell, NULL, &x)); 17379566063dSJacob Faibussowitsch PetscCall(DMRestoreLocalVector(dm, &localX)); 17389566063dSJacob Faibussowitsch PetscCall(PetscFree6(funcVal, interpolant, coords, fegeom.detJ, fegeom.J, fegeom.invJ)); 1739e735a8a9SMatthew G. Knepley } 17409566063dSJacob Faibussowitsch if (transform) PetscCall(DMPlexBasisTransformApply_Internal(dm, &coords[dE * q], PETSC_FALSE, Nc, funcVal, funcVal, dm->transformCtx)); 174196959cd1SMatthew G. Knepley /* Call once for each face, except for lagrange field */ 17429566063dSJacob Faibussowitsch if (id == PETSCFE_CLASSID) PetscCall(PetscFEInterpolate_Static((PetscFE)obj, &x[fOff], &qgeom, q, interpolant)); 17439566063dSJacob Faibussowitsch else if (id == PETSCFV_CLASSID) PetscCall(PetscFVInterpolate_Static((PetscFV)obj, &x[fOff], q, interpolant)); 174463a3b9bcSJacob Faibussowitsch else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, fields[f]); 174515496722SMatthew G. Knepley for (fc = 0; fc < Nc; ++fc) { 1746beaa55a6SMatthew G. Knepley const PetscReal wt = quadWeights[q * qNc + (qNc == 1 ? 0 : qc + fc)]; 17479371c9d4SSatish Balay if (debug) 17489371c9d4SSatish Balay PetscCall(PetscPrintf(PETSC_COMM_SELF, " cell %" PetscInt_FMT " field %" PetscInt_FMT ",%" PetscInt_FMT " point %g %g %g diff %g\n", cell, fields[f], fc, (double)(dE > 0 ? coords[dE * q] : 0.), (double)(dE > 1 ? coords[dE * q + 1] : 0.), (double)(dE > 2 ? coords[dE * q + 2] : 0.), 17499371c9d4SSatish Balay (double)(PetscSqr(PetscRealPart(interpolant[fc] - funcVal[fc])) * wt * fegeom.detJ[q]))); 17504bee2e38SMatthew G. Knepley elemDiff += PetscSqr(PetscRealPart(interpolant[fc] - funcVal[fc])) * wt * fegeom.detJ[q]; 175173d901b8SMatthew G. Knepley } 175273d901b8SMatthew G. Knepley } 1753083401c6SMatthew G. Knepley fOff += Nb; 17549c3cf19fSMatthew G. Knepley qc += Nc; 1755083401c6SMatthew G. Knepley localDiff[fields[f]] += elemDiff; 175663a3b9bcSJacob Faibussowitsch if (debug) PetscCall(PetscPrintf(PETSC_COMM_SELF, " cell %" PetscInt_FMT " field %" PetscInt_FMT " cum diff %g\n", cell, fields[f], (double)localDiff[fields[f]])); 175773d901b8SMatthew G. Knepley } 17589566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(dm, NULL, localX, cell, NULL, &x)); 1759083401c6SMatthew G. Knepley } 1760083401c6SMatthew G. Knepley if (label) { 17619566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(pointIS, &points)); 17629566063dSJacob Faibussowitsch PetscCall(ISDestroy(&pointIS)); 1763083401c6SMatthew G. Knepley } 17649566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(fieldIS, &fields)); 17659566063dSJacob Faibussowitsch PetscCall(PetscFree6(funcVal, interpolant, coords, fegeom.detJ, fegeom.J, fegeom.invJ)); 176673d901b8SMatthew G. Knepley } 17679566063dSJacob Faibussowitsch PetscCall(DMRestoreLocalVector(dm, &localX)); 17681c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(localDiff, diff, Nf, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)dm))); 17699566063dSJacob Faibussowitsch PetscCall(PetscFree(localDiff)); 1770083401c6SMatthew G. Knepley for (f = 0; f < Nf; ++f) diff[f] = PetscSqrtReal(diff[f]); 17713ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 177273d901b8SMatthew G. Knepley } 177373d901b8SMatthew G. Knepley 1774e729f68cSMatthew G. Knepley /*@C 1775e729f68cSMatthew G. Knepley DMPlexComputeL2DiffVec - This function computes the cellwise L_2 difference between a function u and an FEM interpolant solution u_h, and stores it in a Vec. 1776e729f68cSMatthew G. Knepley 177720f4b53cSBarry Smith Collective 1778c0f8e1fdSMatthew G. Knepley 1779e729f68cSMatthew G. Knepley Input Parameters: 1780a1cb98faSBarry Smith + dm - The `DM` 17810163fd50SMatthew G. Knepley . time - The time 178220f4b53cSBarry Smith . funcs - The functions to evaluate for each field component: `NULL` means that component does not contribute to error calculation 178320f4b53cSBarry Smith . ctxs - Optional array of contexts to pass to each function, or `NULL`. 1784e729f68cSMatthew G. Knepley - X - The coefficient vector u_h 1785e729f68cSMatthew G. Knepley 1786e729f68cSMatthew G. Knepley Output Parameter: 178720f4b53cSBarry Smith . D - A `Vec` which holds the difference ||u - u_h||_2 for each cell 1788e729f68cSMatthew G. Knepley 1789e729f68cSMatthew G. Knepley Level: developer 1790e729f68cSMatthew G. Knepley 17911cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMProjectFunction()`, `DMComputeL2Diff()`, `DMPlexComputeL2FieldDiff()`, `DMComputeL2GradientDiff()` 1792e729f68cSMatthew G. Knepley @*/ 1793d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeL2DiffVec(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal[], PetscInt, PetscScalar *, void *), void **ctxs, Vec X, Vec D) 1794d71ae5a4SJacob Faibussowitsch { 1795e729f68cSMatthew G. Knepley PetscSection section; 1796e729f68cSMatthew G. Knepley PetscQuadrature quad; 1797e729f68cSMatthew G. Knepley Vec localX; 17984bee2e38SMatthew G. Knepley PetscFEGeom fegeom; 1799e729f68cSMatthew G. Knepley PetscScalar *funcVal, *interpolant; 18004bee2e38SMatthew G. Knepley PetscReal *coords; 1801e729f68cSMatthew G. Knepley const PetscReal *quadPoints, *quadWeights; 1802485ad865SMatthew G. Knepley PetscInt dim, coordDim, numFields, numComponents = 0, qNc, Nq, cStart, cEnd, c, field, fieldOffset; 1803e729f68cSMatthew G. Knepley 1804e729f68cSMatthew G. Knepley PetscFunctionBegin; 18059566063dSJacob Faibussowitsch PetscCall(VecSet(D, 0.0)); 18069566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 18079566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDim(dm, &coordDim)); 18089566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, §ion)); 18099566063dSJacob Faibussowitsch PetscCall(PetscSectionGetNumFields(section, &numFields)); 18109566063dSJacob Faibussowitsch PetscCall(DMGetLocalVector(dm, &localX)); 18119566063dSJacob Faibussowitsch PetscCall(DMProjectFunctionLocal(dm, time, funcs, ctxs, INSERT_BC_VALUES, localX)); 18129566063dSJacob Faibussowitsch PetscCall(DMGlobalToLocalBegin(dm, X, INSERT_VALUES, localX)); 18139566063dSJacob Faibussowitsch PetscCall(DMGlobalToLocalEnd(dm, X, INSERT_VALUES, localX)); 1814e729f68cSMatthew G. Knepley for (field = 0; field < numFields; ++field) { 1815e729f68cSMatthew G. Knepley PetscObject obj; 1816e729f68cSMatthew G. Knepley PetscClassId id; 1817e729f68cSMatthew G. Knepley PetscInt Nc; 1818e729f68cSMatthew G. Knepley 18199566063dSJacob Faibussowitsch PetscCall(DMGetField(dm, field, NULL, &obj)); 18209566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 1821e729f68cSMatthew G. Knepley if (id == PETSCFE_CLASSID) { 1822e729f68cSMatthew G. Knepley PetscFE fe = (PetscFE)obj; 1823e729f68cSMatthew G. Knepley 18249566063dSJacob Faibussowitsch PetscCall(PetscFEGetQuadrature(fe, &quad)); 18259566063dSJacob Faibussowitsch PetscCall(PetscFEGetNumComponents(fe, &Nc)); 1826e729f68cSMatthew G. Knepley } else if (id == PETSCFV_CLASSID) { 1827e729f68cSMatthew G. Knepley PetscFV fv = (PetscFV)obj; 1828e729f68cSMatthew G. Knepley 18299566063dSJacob Faibussowitsch PetscCall(PetscFVGetQuadrature(fv, &quad)); 18309566063dSJacob Faibussowitsch PetscCall(PetscFVGetNumComponents(fv, &Nc)); 183163a3b9bcSJacob Faibussowitsch } else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, field); 1832e729f68cSMatthew G. Knepley numComponents += Nc; 1833e729f68cSMatthew G. Knepley } 18349566063dSJacob Faibussowitsch PetscCall(PetscQuadratureGetData(quad, NULL, &qNc, &Nq, &quadPoints, &quadWeights)); 183563a3b9bcSJacob Faibussowitsch PetscCheck(!(qNc != 1) || !(qNc != numComponents), PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_SIZ, "Quadrature components %" PetscInt_FMT " != %" PetscInt_FMT " field components", qNc, numComponents); 18369566063dSJacob Faibussowitsch PetscCall(PetscMalloc6(numComponents, &funcVal, numComponents, &interpolant, coordDim * Nq, &coords, Nq, &fegeom.detJ, coordDim * coordDim * Nq, &fegeom.J, coordDim * coordDim * Nq, &fegeom.invJ)); 18379566063dSJacob Faibussowitsch PetscCall(DMPlexGetSimplexOrBoxCells(dm, 0, &cStart, &cEnd)); 1838e729f68cSMatthew G. Knepley for (c = cStart; c < cEnd; ++c) { 1839e729f68cSMatthew G. Knepley PetscScalar *x = NULL; 18406f288a59SMatthew G. Knepley PetscScalar elemDiff = 0.0; 18419c3cf19fSMatthew G. Knepley PetscInt qc = 0; 1842e729f68cSMatthew G. Knepley 18439566063dSJacob Faibussowitsch PetscCall(DMPlexComputeCellGeometryFEM(dm, c, quad, coords, fegeom.J, fegeom.invJ, fegeom.detJ)); 1844e8e188d2SZach Atkins PetscCall(DMPlexVecGetOrientedClosure_Internal(dm, NULL, PETSC_FALSE, localX, c, 0, NULL, &x)); 1845e729f68cSMatthew G. Knepley 1846e729f68cSMatthew G. Knepley for (field = 0, fieldOffset = 0; field < numFields; ++field) { 1847e729f68cSMatthew G. Knepley PetscObject obj; 1848e729f68cSMatthew G. Knepley PetscClassId id; 1849e729f68cSMatthew G. Knepley void *const ctx = ctxs ? ctxs[field] : NULL; 1850e729f68cSMatthew G. Knepley PetscInt Nb, Nc, q, fc; 1851e729f68cSMatthew G. Knepley 18529566063dSJacob Faibussowitsch PetscCall(DMGetField(dm, field, NULL, &obj)); 18539566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 18549371c9d4SSatish Balay if (id == PETSCFE_CLASSID) { 18559371c9d4SSatish Balay PetscCall(PetscFEGetNumComponents((PetscFE)obj, &Nc)); 18569371c9d4SSatish Balay PetscCall(PetscFEGetDimension((PetscFE)obj, &Nb)); 18579371c9d4SSatish Balay } else if (id == PETSCFV_CLASSID) { 18589371c9d4SSatish Balay PetscCall(PetscFVGetNumComponents((PetscFV)obj, &Nc)); 18599371c9d4SSatish Balay Nb = 1; 18609371c9d4SSatish Balay } else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, field); 186123f34ed2SToby Isaac if (funcs[field]) { 18627318780aSToby Isaac for (q = 0; q < Nq; ++q) { 18632a4e142eSMatthew G. Knepley PetscFEGeom qgeom; 18642a4e142eSMatthew G. Knepley 18652a4e142eSMatthew G. Knepley qgeom.dimEmbed = fegeom.dimEmbed; 18662a4e142eSMatthew G. Knepley qgeom.J = &fegeom.J[q * coordDim * coordDim]; 18672a4e142eSMatthew G. Knepley qgeom.invJ = &fegeom.invJ[q * coordDim * coordDim]; 18682a4e142eSMatthew G. Knepley qgeom.detJ = &fegeom.detJ[q]; 186963a3b9bcSJacob Faibussowitsch PetscCheck(fegeom.detJ[q] > 0.0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Invalid determinant %g for element %" PetscInt_FMT ", quadrature points %" PetscInt_FMT, (double)fegeom.detJ[q], c, q); 18709566063dSJacob Faibussowitsch PetscCall((*funcs[field])(coordDim, time, &coords[q * coordDim], Nc, funcVal, ctx)); 1871c3e24edfSBarry Smith #if defined(needs_fix_with_return_code_argument) 1872e735a8a9SMatthew G. Knepley if (ierr) { 18739566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(dm, NULL, localX, c, NULL, &x)); 18749566063dSJacob Faibussowitsch PetscCall(PetscFree6(funcVal, interpolant, coords, fegeom.detJ, fegeom.J, fegeom.invJ)); 18759566063dSJacob Faibussowitsch PetscCall(DMRestoreLocalVector(dm, &localX)); 1876e735a8a9SMatthew G. Knepley } 1877c3e24edfSBarry Smith #endif 18789566063dSJacob Faibussowitsch if (id == PETSCFE_CLASSID) PetscCall(PetscFEInterpolate_Static((PetscFE)obj, &x[fieldOffset], &qgeom, q, interpolant)); 18799566063dSJacob Faibussowitsch else if (id == PETSCFV_CLASSID) PetscCall(PetscFVInterpolate_Static((PetscFV)obj, &x[fieldOffset], q, interpolant)); 188063a3b9bcSJacob Faibussowitsch else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, field); 1881e729f68cSMatthew G. Knepley for (fc = 0; fc < Nc; ++fc) { 1882beaa55a6SMatthew G. Knepley const PetscReal wt = quadWeights[q * qNc + (qNc == 1 ? 0 : qc + fc)]; 18834bee2e38SMatthew G. Knepley elemDiff += PetscSqr(PetscRealPart(interpolant[fc] - funcVal[fc])) * wt * fegeom.detJ[q]; 1884e729f68cSMatthew G. Knepley } 1885e729f68cSMatthew G. Knepley } 188623f34ed2SToby Isaac } 1887beaa55a6SMatthew G. Knepley fieldOffset += Nb; 18889c3cf19fSMatthew G. Knepley qc += Nc; 1889e729f68cSMatthew G. Knepley } 18909566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(dm, NULL, localX, c, NULL, &x)); 18919566063dSJacob Faibussowitsch PetscCall(VecSetValue(D, c - cStart, elemDiff, INSERT_VALUES)); 1892e729f68cSMatthew G. Knepley } 18939566063dSJacob Faibussowitsch PetscCall(PetscFree6(funcVal, interpolant, coords, fegeom.detJ, fegeom.J, fegeom.invJ)); 18949566063dSJacob Faibussowitsch PetscCall(DMRestoreLocalVector(dm, &localX)); 18959566063dSJacob Faibussowitsch PetscCall(VecSqrtAbs(D)); 18963ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1897e729f68cSMatthew G. Knepley } 1898e729f68cSMatthew G. Knepley 18995f0b18bfSMatthew G. Knepley /*@ 19002353bfffSMatthew G. Knepley DMPlexComputeL2FluxDiffVecLocal - This function computes the integral of the difference between the gradient of field `f`in `u` and field `mf` in `mu` 19012353bfffSMatthew G. Knepley 19022353bfffSMatthew G. Knepley Collective 19032353bfffSMatthew G. Knepley 19042353bfffSMatthew G. Knepley Input Parameters: 19052353bfffSMatthew G. Knepley + lu - The local `Vec` containing the primal solution 19062353bfffSMatthew G. Knepley . f - The field number for the potential 19072353bfffSMatthew G. Knepley . lmu - The local `Vec` containing the mixed solution 19082353bfffSMatthew G. Knepley - mf - The field number for the flux 19092353bfffSMatthew G. Knepley 19102353bfffSMatthew G. Knepley Output Parameter: 19112353bfffSMatthew G. Knepley . eFlux - A global `Vec` which holds $||\nabla u_f - \mu_{mf}||$ 19122353bfffSMatthew G. Knepley 19132353bfffSMatthew G. Knepley Level: advanced 19142353bfffSMatthew G. Knepley 19152353bfffSMatthew G. Knepley Notes: 19162353bfffSMatthew G. Knepley We assume that the `DM` for each solution has the same topology, geometry, and quadrature. 19172353bfffSMatthew G. Knepley 19182353bfffSMatthew G. Knepley This is usually used to get an error estimate for the primal solution, using the flux from a mixed solution. 19192353bfffSMatthew G. Knepley 19202353bfffSMatthew G. Knepley .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexComputeL2FluxDiffVec()`, `DMProjectFunction()`, `DMComputeL2Diff()`, `DMPlexComputeL2FieldDiff()`, `DMComputeL2GradientDiff()` 19212353bfffSMatthew G. Knepley @*/ 19222353bfffSMatthew G. Knepley PetscErrorCode DMPlexComputeL2FluxDiffVecLocal(Vec lu, PetscInt f, Vec lmu, PetscInt mf, Vec eFlux) 19232353bfffSMatthew G. Knepley { 19242353bfffSMatthew G. Knepley DM dm, mdm, edm; 19252353bfffSMatthew G. Knepley PetscFE fe, mfe; 19262353bfffSMatthew G. Knepley PetscFEGeom fegeom; 19272353bfffSMatthew G. Knepley PetscQuadrature quad; 19282353bfffSMatthew G. Knepley const PetscReal *quadWeights; 19292353bfffSMatthew G. Knepley PetscReal *coords; 19302353bfffSMatthew G. Knepley PetscScalar *interpolant, *minterpolant, *earray; 19312353bfffSMatthew G. Knepley PetscInt cdim, mcdim, cStart, cEnd, Nc, mNc, qNc, Nq; 19322353bfffSMatthew G. Knepley MPI_Comm comm; 19332353bfffSMatthew G. Knepley 19342353bfffSMatthew G. Knepley PetscFunctionBegin; 19352353bfffSMatthew G. Knepley PetscCall(VecGetDM(lu, &dm)); 19362353bfffSMatthew G. Knepley PetscCall(VecGetDM(lmu, &mdm)); 19372353bfffSMatthew G. Knepley PetscCall(VecGetDM(eFlux, &edm)); 19382353bfffSMatthew G. Knepley PetscCall(PetscObjectGetComm((PetscObject)dm, &comm)); 19392353bfffSMatthew G. Knepley PetscCall(VecSet(eFlux, 0.0)); 19402353bfffSMatthew G. Knepley 19412353bfffSMatthew G. Knepley // Check if the both problems are on the same mesh 19422353bfffSMatthew G. Knepley PetscCall(DMGetCoordinateDim(dm, &cdim)); 19432353bfffSMatthew G. Knepley PetscCall(DMGetCoordinateDim(mdm, &mcdim)); 19442353bfffSMatthew G. Knepley PetscCheck(cdim == mcdim, comm, PETSC_ERR_ARG_SIZ, "primal coordinate Dim %" PetscInt_FMT " != %" PetscInt_FMT " mixed coordinate Dim", cdim, mcdim); 19452353bfffSMatthew G. Knepley fegeom.dimEmbed = cdim; 19462353bfffSMatthew G. Knepley 19472353bfffSMatthew G. Knepley PetscCall(DMGetField(dm, f, NULL, (PetscObject *)&fe)); 19482353bfffSMatthew G. Knepley PetscCall(DMGetField(mdm, mf, NULL, (PetscObject *)&mfe)); 19492353bfffSMatthew G. Knepley PetscCall(PetscFEGetNumComponents(fe, &Nc)); 19502353bfffSMatthew G. Knepley PetscCall(PetscFEGetNumComponents(mfe, &mNc)); 19512353bfffSMatthew G. Knepley PetscCall(PetscFEGetQuadrature(fe, &quad)); 19522353bfffSMatthew G. Knepley PetscCall(PetscQuadratureGetData(quad, NULL, &qNc, &Nq, NULL, &quadWeights)); 19532353bfffSMatthew G. Knepley PetscCheck(qNc == 1 || qNc == mNc, comm, PETSC_ERR_ARG_SIZ, "Quadrature components %" PetscInt_FMT " != %" PetscInt_FMT " field components", qNc, mNc); 19542353bfffSMatthew G. Knepley 19552353bfffSMatthew G. Knepley PetscCall(DMPlexGetSimplexOrBoxCells(dm, 0, &cStart, &cEnd)); 19562353bfffSMatthew G. Knepley PetscCall(VecGetArrayWrite(eFlux, &earray)); 19572353bfffSMatthew G. Knepley PetscCall(PetscMalloc6(Nc * cdim, &interpolant, mNc * cdim, &minterpolant, cdim * (Nq + 1), &coords, cdim * cdim * Nq, &fegeom.J, cdim * cdim * Nq, &fegeom.invJ, Nq, &fegeom.detJ)); 19582353bfffSMatthew G. Knepley for (PetscInt c = cStart; c < cEnd; ++c) { 19592353bfffSMatthew G. Knepley PetscScalar *x = NULL; 19602353bfffSMatthew G. Knepley PetscScalar *mx = NULL; 19612353bfffSMatthew G. Knepley PetscScalar *eval = NULL; 19622353bfffSMatthew G. Knepley PetscReal fluxElemDiff = 0.0; 19632353bfffSMatthew G. Knepley 19642353bfffSMatthew G. Knepley PetscCall(DMPlexComputeCellGeometryFEM(dm, c, quad, coords, fegeom.J, fegeom.invJ, fegeom.detJ)); 19652353bfffSMatthew G. Knepley PetscCall(DMPlexVecGetClosure(dm, NULL, lu, c, NULL, &x)); 19662353bfffSMatthew G. Knepley PetscCall(DMPlexVecGetClosure(mdm, NULL, lmu, c, NULL, &mx)); 19672353bfffSMatthew G. Knepley 19682353bfffSMatthew G. Knepley for (PetscInt q = 0; q < Nq; ++q) { 19692353bfffSMatthew G. Knepley PetscFEGeom qgeom; 19702353bfffSMatthew G. Knepley 19712353bfffSMatthew G. Knepley qgeom.dimEmbed = fegeom.dimEmbed; 19722353bfffSMatthew G. Knepley qgeom.J = &fegeom.J[q * cdim * cdim]; 19732353bfffSMatthew G. Knepley qgeom.invJ = &fegeom.invJ[q * cdim * cdim]; 19742353bfffSMatthew G. Knepley qgeom.detJ = &fegeom.detJ[q]; 19752353bfffSMatthew G. Knepley 19762353bfffSMatthew G. Knepley PetscCheck(fegeom.detJ[q] > 0.0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Invalid determinant %g for element %" PetscInt_FMT ", quadrature points %" PetscInt_FMT, (double)fegeom.detJ[q], c, q); 19772353bfffSMatthew G. Knepley 19782353bfffSMatthew G. Knepley PetscCall(PetscFEInterpolate_Static(mfe, &mx[0], &qgeom, q, minterpolant)); 19792353bfffSMatthew G. Knepley PetscCall(PetscFEInterpolateGradient_Static(fe, 1, &x[0], &qgeom, q, interpolant)); 19802353bfffSMatthew G. Knepley 19812353bfffSMatthew G. Knepley /* Now take the elementwise difference and store that in a vector. */ 19822353bfffSMatthew G. Knepley for (PetscInt fc = 0; fc < mNc; ++fc) { 19832353bfffSMatthew G. Knepley const PetscReal wt = quadWeights[q * qNc + (qNc == 1 ? 0 : fc)]; 19842353bfffSMatthew G. Knepley fluxElemDiff += PetscSqr(PetscRealPart(interpolant[fc] - minterpolant[fc])) * wt * fegeom.detJ[q]; 19852353bfffSMatthew G. Knepley } 19862353bfffSMatthew G. Knepley } 19872353bfffSMatthew G. Knepley PetscCall(DMPlexVecRestoreClosure(dm, NULL, lu, c, NULL, &x)); 19882353bfffSMatthew G. Knepley PetscCall(DMPlexVecRestoreClosure(mdm, NULL, lmu, c, NULL, &mx)); 19892353bfffSMatthew G. Knepley PetscCall(DMPlexPointGlobalRef(edm, c, earray, (void *)&eval)); 19902353bfffSMatthew G. Knepley if (eval) eval[0] = fluxElemDiff; 19912353bfffSMatthew G. Knepley } 19922353bfffSMatthew G. Knepley PetscCall(PetscFree6(interpolant, minterpolant, coords, fegeom.detJ, fegeom.J, fegeom.invJ)); 19932353bfffSMatthew G. Knepley PetscCall(VecRestoreArrayWrite(eFlux, &earray)); 19942353bfffSMatthew G. Knepley 19952353bfffSMatthew G. Knepley PetscCall(VecAssemblyBegin(eFlux)); 19962353bfffSMatthew G. Knepley PetscCall(VecAssemblyEnd(eFlux)); 19972353bfffSMatthew G. Knepley PetscCall(VecSqrtAbs(eFlux)); 19982353bfffSMatthew G. Knepley PetscFunctionReturn(PETSC_SUCCESS); 19992353bfffSMatthew G. Knepley } 20002353bfffSMatthew G. Knepley 20012353bfffSMatthew G. Knepley /*@ 20022353bfffSMatthew G. Knepley DMPlexComputeL2FluxDiffVec - This function computes the integral of the difference between the gradient of field `f`in `u` and field `mf` in `mu` 20032353bfffSMatthew G. Knepley 20042353bfffSMatthew G. Knepley Collective 20052353bfffSMatthew G. Knepley 20062353bfffSMatthew G. Knepley Input Parameters: 20072353bfffSMatthew G. Knepley + u - The global `Vec` containing the primal solution 20082353bfffSMatthew G. Knepley . f - The field number for the potential 20092353bfffSMatthew G. Knepley . mu - The global `Vec` containing the mixed solution 20102353bfffSMatthew G. Knepley - mf - The field number for the flux 20112353bfffSMatthew G. Knepley 20122353bfffSMatthew G. Knepley Output Parameter: 20132353bfffSMatthew G. Knepley . eFlux - A global `Vec` which holds $||\nabla u_f - \mu_{mf}||$ 20142353bfffSMatthew G. Knepley 20152353bfffSMatthew G. Knepley Level: advanced 20162353bfffSMatthew G. Knepley 20172353bfffSMatthew G. Knepley Notes: 20182353bfffSMatthew G. Knepley We assume that the `DM` for each solution has the same topology, geometry, and quadrature. 20192353bfffSMatthew G. Knepley 20202353bfffSMatthew G. Knepley This is usually used to get an error estimate for the primal solution, using the flux from a mixed solution. 20212353bfffSMatthew G. Knepley 20222353bfffSMatthew G. Knepley .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexComputeL2FluxDiffVecLocal()`, `DMProjectFunction()`, `DMComputeL2Diff()`, `DMPlexComputeL2FieldDiff()`, `DMComputeL2GradientDiff()` 20232353bfffSMatthew G. Knepley @*/ 20242353bfffSMatthew G. Knepley PetscErrorCode DMPlexComputeL2FluxDiffVec(Vec u, PetscInt f, Vec mu, PetscInt mf, Vec eFlux) 20252353bfffSMatthew G. Knepley { 20262353bfffSMatthew G. Knepley DM dm, mdm; 20272353bfffSMatthew G. Knepley Vec lu, lmu; 20282353bfffSMatthew G. Knepley 20292353bfffSMatthew G. Knepley PetscFunctionBegin; 20302353bfffSMatthew G. Knepley PetscCall(VecGetDM(u, &dm)); 20312353bfffSMatthew G. Knepley PetscCall(DMGetLocalVector(dm, &lu)); 20322353bfffSMatthew G. Knepley PetscCall(DMGlobalToLocal(dm, u, INSERT_VALUES, lu)); 20332353bfffSMatthew G. Knepley PetscCall(DMPlexInsertBoundaryValues(dm, PETSC_TRUE, lu, 0.0, NULL, NULL, NULL)); 20342353bfffSMatthew G. Knepley 20352353bfffSMatthew G. Knepley PetscCall(VecGetDM(mu, &mdm)); 20362353bfffSMatthew G. Knepley PetscCall(DMGetLocalVector(mdm, &lmu)); 20372353bfffSMatthew G. Knepley PetscCall(DMGlobalToLocal(mdm, mu, INSERT_VALUES, lmu)); 20382353bfffSMatthew G. Knepley PetscCall(DMPlexInsertBoundaryValues(mdm, PETSC_TRUE, lmu, 0.0, NULL, NULL, NULL)); 20392353bfffSMatthew G. Knepley 20402353bfffSMatthew G. Knepley PetscCall(DMPlexComputeL2FluxDiffVecLocal(lu, f, lmu, mf, eFlux)); 20412353bfffSMatthew G. Knepley 20422353bfffSMatthew G. Knepley PetscCall(DMRestoreLocalVector(dm, &lu)); 20432353bfffSMatthew G. Knepley PetscCall(DMRestoreLocalVector(mdm, &lmu)); 20442353bfffSMatthew G. Knepley PetscFunctionReturn(PETSC_SUCCESS); 20452353bfffSMatthew G. Knepley } 20462353bfffSMatthew G. Knepley 20472353bfffSMatthew G. Knepley /*@ 204820f4b53cSBarry Smith DMPlexComputeClementInterpolant - This function computes the L2 projection of the cellwise values of a function u onto P1 20495f0b18bfSMatthew G. Knepley 205020f4b53cSBarry Smith Collective 20515f0b18bfSMatthew G. Knepley 20525f0b18bfSMatthew G. Knepley Input Parameters: 2053a1cb98faSBarry Smith + dm - The `DM` 20545f0b18bfSMatthew G. Knepley - locX - The coefficient vector u_h 20555f0b18bfSMatthew G. Knepley 20565f0b18bfSMatthew G. Knepley Output Parameter: 2057a1cb98faSBarry Smith . locC - A `Vec` which holds the Clement interpolant of the function 20585f0b18bfSMatthew G. Knepley 20595f0b18bfSMatthew G. Knepley Level: developer 20605f0b18bfSMatthew G. Knepley 2061a1cb98faSBarry Smith Note: 2062a1cb98faSBarry Smith $ u_h(v_i) = \sum_{T_i \in support(v_i)} |T_i| u_h(T_i) / \sum_{T_i \in support(v_i)} |T_i| $ where $ |T_i| $ is the cell volume 2063a1cb98faSBarry Smith 20641cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMProjectFunction()`, `DMComputeL2Diff()`, `DMPlexComputeL2FieldDiff()`, `DMComputeL2GradientDiff()` 20655f0b18bfSMatthew G. Knepley @*/ 2066d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeClementInterpolant(DM dm, Vec locX, Vec locC) 2067d71ae5a4SJacob Faibussowitsch { 20685f0b18bfSMatthew G. Knepley PetscInt debug = ((DM_Plex *)dm->data)->printFEM; 20695f0b18bfSMatthew G. Knepley DM dmc; 20705f0b18bfSMatthew G. Knepley PetscQuadrature quad; 20715f0b18bfSMatthew G. Knepley PetscScalar *interpolant, *valsum; 20725f0b18bfSMatthew G. Knepley PetscFEGeom fegeom; 20735f0b18bfSMatthew G. Knepley PetscReal *coords; 20745f0b18bfSMatthew G. Knepley const PetscReal *quadPoints, *quadWeights; 20755f0b18bfSMatthew G. Knepley PetscInt dim, cdim, Nf, f, Nc = 0, Nq, qNc, cStart, cEnd, vStart, vEnd, v; 20765f0b18bfSMatthew G. Knepley 20775f0b18bfSMatthew G. Knepley PetscFunctionBegin; 20789566063dSJacob Faibussowitsch PetscCall(PetscCitationsRegister(ClementCitation, &Clementcite)); 20799566063dSJacob Faibussowitsch PetscCall(VecGetDM(locC, &dmc)); 20809566063dSJacob Faibussowitsch PetscCall(VecSet(locC, 0.0)); 20819566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 20829566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDim(dm, &cdim)); 20835f0b18bfSMatthew G. Knepley fegeom.dimEmbed = cdim; 20849566063dSJacob Faibussowitsch PetscCall(DMGetNumFields(dm, &Nf)); 20855f0b18bfSMatthew G. Knepley PetscCheck(Nf > 0, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of fields is zero!"); 20865f0b18bfSMatthew G. Knepley for (f = 0; f < Nf; ++f) { 20875f0b18bfSMatthew G. Knepley PetscObject obj; 20885f0b18bfSMatthew G. Knepley PetscClassId id; 20895f0b18bfSMatthew G. Knepley PetscInt fNc; 20905f0b18bfSMatthew G. Knepley 20919566063dSJacob Faibussowitsch PetscCall(DMGetField(dm, f, NULL, &obj)); 20929566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 20935f0b18bfSMatthew G. Knepley if (id == PETSCFE_CLASSID) { 20945f0b18bfSMatthew G. Knepley PetscFE fe = (PetscFE)obj; 20955f0b18bfSMatthew G. Knepley 20969566063dSJacob Faibussowitsch PetscCall(PetscFEGetQuadrature(fe, &quad)); 20979566063dSJacob Faibussowitsch PetscCall(PetscFEGetNumComponents(fe, &fNc)); 20985f0b18bfSMatthew G. Knepley } else if (id == PETSCFV_CLASSID) { 20995f0b18bfSMatthew G. Knepley PetscFV fv = (PetscFV)obj; 21005f0b18bfSMatthew G. Knepley 21019566063dSJacob Faibussowitsch PetscCall(PetscFVGetQuadrature(fv, &quad)); 21029566063dSJacob Faibussowitsch PetscCall(PetscFVGetNumComponents(fv, &fNc)); 210363a3b9bcSJacob Faibussowitsch } else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, f); 21045f0b18bfSMatthew G. Knepley Nc += fNc; 21055f0b18bfSMatthew G. Knepley } 21069566063dSJacob Faibussowitsch PetscCall(PetscQuadratureGetData(quad, NULL, &qNc, &Nq, &quadPoints, &quadWeights)); 210763a3b9bcSJacob Faibussowitsch PetscCheck(qNc == 1, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_SIZ, "Quadrature components %" PetscInt_FMT " > 1", qNc); 21089566063dSJacob Faibussowitsch PetscCall(PetscMalloc6(Nc * 2, &valsum, Nc, &interpolant, cdim * Nq, &coords, Nq, &fegeom.detJ, cdim * cdim * Nq, &fegeom.J, cdim * cdim * Nq, &fegeom.invJ)); 21099566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthStratum(dm, 0, &vStart, &vEnd)); 21109566063dSJacob Faibussowitsch PetscCall(DMPlexGetSimplexOrBoxCells(dm, 0, &cStart, &cEnd)); 21115f0b18bfSMatthew G. Knepley for (v = vStart; v < vEnd; ++v) { 21125f0b18bfSMatthew G. Knepley PetscScalar volsum = 0.0; 21135f0b18bfSMatthew G. Knepley PetscInt *star = NULL; 21145f0b18bfSMatthew G. Knepley PetscInt starSize, st, fc; 21155f0b18bfSMatthew G. Knepley 21169566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(valsum, Nc)); 21179566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(dm, v, PETSC_FALSE, &starSize, &star)); 21185f0b18bfSMatthew G. Knepley for (st = 0; st < starSize * 2; st += 2) { 21195f0b18bfSMatthew G. Knepley const PetscInt cell = star[st]; 21205f0b18bfSMatthew G. Knepley PetscScalar *val = &valsum[Nc]; 21215f0b18bfSMatthew G. Knepley PetscScalar *x = NULL; 21225f0b18bfSMatthew G. Knepley PetscReal vol = 0.0; 21235f0b18bfSMatthew G. Knepley PetscInt foff = 0; 21245f0b18bfSMatthew G. Knepley 21255f0b18bfSMatthew G. Knepley if ((cell < cStart) || (cell >= cEnd)) continue; 21269566063dSJacob Faibussowitsch PetscCall(DMPlexComputeCellGeometryFEM(dm, cell, quad, coords, fegeom.J, fegeom.invJ, fegeom.detJ)); 21279566063dSJacob Faibussowitsch PetscCall(DMPlexVecGetClosure(dm, NULL, locX, cell, NULL, &x)); 21285f0b18bfSMatthew G. Knepley for (f = 0; f < Nf; ++f) { 21295f0b18bfSMatthew G. Knepley PetscObject obj; 21305f0b18bfSMatthew G. Knepley PetscClassId id; 21315f0b18bfSMatthew G. Knepley PetscInt Nb, fNc, q; 21325f0b18bfSMatthew G. Knepley 21339566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(val, Nc)); 21349566063dSJacob Faibussowitsch PetscCall(DMGetField(dm, f, NULL, &obj)); 21359566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 21369371c9d4SSatish Balay if (id == PETSCFE_CLASSID) { 21379371c9d4SSatish Balay PetscCall(PetscFEGetNumComponents((PetscFE)obj, &fNc)); 21389371c9d4SSatish Balay PetscCall(PetscFEGetDimension((PetscFE)obj, &Nb)); 21399371c9d4SSatish Balay } else if (id == PETSCFV_CLASSID) { 21409371c9d4SSatish Balay PetscCall(PetscFVGetNumComponents((PetscFV)obj, &fNc)); 21419371c9d4SSatish Balay Nb = 1; 21429371c9d4SSatish Balay } else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, f); 21435f0b18bfSMatthew G. Knepley for (q = 0; q < Nq; ++q) { 21445f0b18bfSMatthew G. Knepley const PetscReal wt = quadWeights[q] * fegeom.detJ[q]; 21455f0b18bfSMatthew G. Knepley PetscFEGeom qgeom; 21465f0b18bfSMatthew G. Knepley 21475f0b18bfSMatthew G. Knepley qgeom.dimEmbed = fegeom.dimEmbed; 21485f0b18bfSMatthew G. Knepley qgeom.J = &fegeom.J[q * cdim * cdim]; 21495f0b18bfSMatthew G. Knepley qgeom.invJ = &fegeom.invJ[q * cdim * cdim]; 21505f0b18bfSMatthew G. Knepley qgeom.detJ = &fegeom.detJ[q]; 215163a3b9bcSJacob Faibussowitsch PetscCheck(fegeom.detJ[q] > 0.0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Invalid determinant %g for element %" PetscInt_FMT ", quadrature points %" PetscInt_FMT, (double)fegeom.detJ[q], cell, q); 21529566063dSJacob Faibussowitsch if (id == PETSCFE_CLASSID) PetscCall(PetscFEInterpolate_Static((PetscFE)obj, &x[foff], &qgeom, q, interpolant)); 215363a3b9bcSJacob Faibussowitsch else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, f); 21545f0b18bfSMatthew G. Knepley for (fc = 0; fc < fNc; ++fc) val[foff + fc] += interpolant[fc] * wt; 21555f0b18bfSMatthew G. Knepley vol += wt; 21565f0b18bfSMatthew G. Knepley } 21575f0b18bfSMatthew G. Knepley foff += Nb; 21585f0b18bfSMatthew G. Knepley } 21599566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(dm, NULL, locX, cell, NULL, &x)); 21605f0b18bfSMatthew G. Knepley for (fc = 0; fc < Nc; ++fc) valsum[fc] += val[fc]; 21615f0b18bfSMatthew G. Knepley volsum += vol; 21625f0b18bfSMatthew G. Knepley if (debug) { 21639566063dSJacob Faibussowitsch PetscCall(PetscPrintf(PETSC_COMM_SELF, "Vertex %" PetscInt_FMT " Cell %" PetscInt_FMT " value: [", v, cell)); 21645f0b18bfSMatthew G. Knepley for (fc = 0; fc < Nc; ++fc) { 21659566063dSJacob Faibussowitsch if (fc) PetscCall(PetscPrintf(PETSC_COMM_SELF, ", ")); 21669566063dSJacob Faibussowitsch PetscCall(PetscPrintf(PETSC_COMM_SELF, "%g", (double)PetscRealPart(val[fc]))); 21675f0b18bfSMatthew G. Knepley } 21689566063dSJacob Faibussowitsch PetscCall(PetscPrintf(PETSC_COMM_SELF, "]\n")); 21695f0b18bfSMatthew G. Knepley } 21705f0b18bfSMatthew G. Knepley } 21715f0b18bfSMatthew G. Knepley for (fc = 0; fc < Nc; ++fc) valsum[fc] /= volsum; 21729566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dm, v, PETSC_FALSE, &starSize, &star)); 21739566063dSJacob Faibussowitsch PetscCall(DMPlexVecSetClosure(dmc, NULL, locC, v, valsum, INSERT_VALUES)); 21745f0b18bfSMatthew G. Knepley } 21759566063dSJacob Faibussowitsch PetscCall(PetscFree6(valsum, interpolant, coords, fegeom.detJ, fegeom.J, fegeom.invJ)); 21763ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 21775f0b18bfSMatthew G. Knepley } 21785f0b18bfSMatthew G. Knepley 21795f0b18bfSMatthew G. Knepley /*@ 218020f4b53cSBarry Smith DMPlexComputeGradientClementInterpolant - This function computes the L2 projection of the cellwise gradient of a function u onto P1 21811555c271SMatthew G. Knepley 218220f4b53cSBarry Smith Collective 2183c0f8e1fdSMatthew G. Knepley 21841555c271SMatthew G. Knepley Input Parameters: 2185a1cb98faSBarry Smith + dm - The `DM` 21865f0b18bfSMatthew G. Knepley - locX - The coefficient vector u_h 21871555c271SMatthew G. Knepley 21881555c271SMatthew G. Knepley Output Parameter: 2189a1cb98faSBarry Smith . locC - A `Vec` which holds the Clement interpolant of the gradient 21901555c271SMatthew G. Knepley 21911555c271SMatthew G. Knepley Level: developer 21921555c271SMatthew G. Knepley 2193a1cb98faSBarry Smith Note: 2194a1cb98faSBarry Smith $\nabla u_h(v_i) = \sum_{T_i \in support(v_i)} |T_i| \nabla u_h(T_i) / \sum_{T_i \in support(v_i)} |T_i| $ where $ |T_i| $ is the cell volume 2195a1cb98faSBarry Smith 21961cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMProjectFunction()`, `DMComputeL2Diff()`, `DMPlexComputeL2FieldDiff()`, `DMComputeL2GradientDiff()` 21971555c271SMatthew G. Knepley @*/ 2198d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeGradientClementInterpolant(DM dm, Vec locX, Vec locC) 2199d71ae5a4SJacob Faibussowitsch { 2200db1066baSMatthew G. Knepley DM_Plex *mesh = (DM_Plex *)dm->data; 2201db1066baSMatthew G. Knepley PetscInt debug = mesh->printFEM; 22021555c271SMatthew G. Knepley DM dmC; 22031555c271SMatthew G. Knepley PetscQuadrature quad; 22041555c271SMatthew G. Knepley PetscScalar *interpolant, *gradsum; 22054bee2e38SMatthew G. Knepley PetscFEGeom fegeom; 22064bee2e38SMatthew G. Knepley PetscReal *coords; 22071555c271SMatthew G. Knepley const PetscReal *quadPoints, *quadWeights; 2208485ad865SMatthew G. Knepley PetscInt dim, coordDim, numFields, numComponents = 0, qNc, Nq, cStart, cEnd, vStart, vEnd, v, field, fieldOffset; 22091555c271SMatthew G. Knepley 22101555c271SMatthew G. Knepley PetscFunctionBegin; 22119566063dSJacob Faibussowitsch PetscCall(PetscCitationsRegister(ClementCitation, &Clementcite)); 22129566063dSJacob Faibussowitsch PetscCall(VecGetDM(locC, &dmC)); 22139566063dSJacob Faibussowitsch PetscCall(VecSet(locC, 0.0)); 22149566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 22159566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDim(dm, &coordDim)); 22164bee2e38SMatthew G. Knepley fegeom.dimEmbed = coordDim; 22179566063dSJacob Faibussowitsch PetscCall(DMGetNumFields(dm, &numFields)); 22185f80ce2aSJacob Faibussowitsch PetscCheck(numFields, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of fields is zero!"); 22191555c271SMatthew G. Knepley for (field = 0; field < numFields; ++field) { 22201555c271SMatthew G. Knepley PetscObject obj; 22211555c271SMatthew G. Knepley PetscClassId id; 22221555c271SMatthew G. Knepley PetscInt Nc; 22231555c271SMatthew G. Knepley 22249566063dSJacob Faibussowitsch PetscCall(DMGetField(dm, field, NULL, &obj)); 22259566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 22261555c271SMatthew G. Knepley if (id == PETSCFE_CLASSID) { 22271555c271SMatthew G. Knepley PetscFE fe = (PetscFE)obj; 22281555c271SMatthew G. Knepley 22299566063dSJacob Faibussowitsch PetscCall(PetscFEGetQuadrature(fe, &quad)); 22309566063dSJacob Faibussowitsch PetscCall(PetscFEGetNumComponents(fe, &Nc)); 22311555c271SMatthew G. Knepley } else if (id == PETSCFV_CLASSID) { 22321555c271SMatthew G. Knepley PetscFV fv = (PetscFV)obj; 22331555c271SMatthew G. Knepley 22349566063dSJacob Faibussowitsch PetscCall(PetscFVGetQuadrature(fv, &quad)); 22359566063dSJacob Faibussowitsch PetscCall(PetscFVGetNumComponents(fv, &Nc)); 223663a3b9bcSJacob Faibussowitsch } else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, field); 22371555c271SMatthew G. Knepley numComponents += Nc; 22381555c271SMatthew G. Knepley } 22399566063dSJacob Faibussowitsch PetscCall(PetscQuadratureGetData(quad, NULL, &qNc, &Nq, &quadPoints, &quadWeights)); 224063a3b9bcSJacob Faibussowitsch PetscCheck(!(qNc != 1) || !(qNc != numComponents), PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_SIZ, "Quadrature components %" PetscInt_FMT " != %" PetscInt_FMT " field components", qNc, numComponents); 22419566063dSJacob Faibussowitsch PetscCall(PetscMalloc6(coordDim * numComponents * 2, &gradsum, coordDim * numComponents, &interpolant, coordDim * Nq, &coords, Nq, &fegeom.detJ, coordDim * coordDim * Nq, &fegeom.J, coordDim * coordDim * Nq, &fegeom.invJ)); 22429566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthStratum(dm, 0, &vStart, &vEnd)); 22439566063dSJacob Faibussowitsch PetscCall(DMPlexGetSimplexOrBoxCells(dm, 0, &cStart, &cEnd)); 22441555c271SMatthew G. Knepley for (v = vStart; v < vEnd; ++v) { 22451555c271SMatthew G. Knepley PetscScalar volsum = 0.0; 22461555c271SMatthew G. Knepley PetscInt *star = NULL; 22471555c271SMatthew G. Knepley PetscInt starSize, st, d, fc; 22481555c271SMatthew G. Knepley 22499566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(gradsum, coordDim * numComponents)); 22509566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(dm, v, PETSC_FALSE, &starSize, &star)); 22511555c271SMatthew G. Knepley for (st = 0; st < starSize * 2; st += 2) { 22521555c271SMatthew G. Knepley const PetscInt cell = star[st]; 22531555c271SMatthew G. Knepley PetscScalar *grad = &gradsum[coordDim * numComponents]; 22541555c271SMatthew G. Knepley PetscScalar *x = NULL; 22551555c271SMatthew G. Knepley PetscReal vol = 0.0; 22561555c271SMatthew G. Knepley 22571555c271SMatthew G. Knepley if ((cell < cStart) || (cell >= cEnd)) continue; 22589566063dSJacob Faibussowitsch PetscCall(DMPlexComputeCellGeometryFEM(dm, cell, quad, coords, fegeom.J, fegeom.invJ, fegeom.detJ)); 22599566063dSJacob Faibussowitsch PetscCall(DMPlexVecGetClosure(dm, NULL, locX, cell, NULL, &x)); 22601555c271SMatthew G. Knepley for (field = 0, fieldOffset = 0; field < numFields; ++field) { 22611555c271SMatthew G. Knepley PetscObject obj; 22621555c271SMatthew G. Knepley PetscClassId id; 22631555c271SMatthew G. Knepley PetscInt Nb, Nc, q, qc = 0; 22641555c271SMatthew G. Knepley 22659566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(grad, coordDim * numComponents)); 22669566063dSJacob Faibussowitsch PetscCall(DMGetField(dm, field, NULL, &obj)); 22679566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 22689371c9d4SSatish Balay if (id == PETSCFE_CLASSID) { 22699371c9d4SSatish Balay PetscCall(PetscFEGetNumComponents((PetscFE)obj, &Nc)); 22709371c9d4SSatish Balay PetscCall(PetscFEGetDimension((PetscFE)obj, &Nb)); 22719371c9d4SSatish Balay } else if (id == PETSCFV_CLASSID) { 22729371c9d4SSatish Balay PetscCall(PetscFVGetNumComponents((PetscFV)obj, &Nc)); 22739371c9d4SSatish Balay Nb = 1; 22749371c9d4SSatish Balay } else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, field); 22751555c271SMatthew G. Knepley for (q = 0; q < Nq; ++q) { 22762a4e142eSMatthew G. Knepley PetscFEGeom qgeom; 22772a4e142eSMatthew G. Knepley 22782a4e142eSMatthew G. Knepley qgeom.dimEmbed = fegeom.dimEmbed; 22792a4e142eSMatthew G. Knepley qgeom.J = &fegeom.J[q * coordDim * coordDim]; 22802a4e142eSMatthew G. Knepley qgeom.invJ = &fegeom.invJ[q * coordDim * coordDim]; 22812a4e142eSMatthew G. Knepley qgeom.detJ = &fegeom.detJ[q]; 228263a3b9bcSJacob Faibussowitsch PetscCheck(fegeom.detJ[q] > 0.0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Invalid determinant %g for element %" PetscInt_FMT ", quadrature points %" PetscInt_FMT, (double)fegeom.detJ[q], cell, q); 22839566063dSJacob Faibussowitsch if (id == PETSCFE_CLASSID) PetscCall(PetscFEInterpolateGradient_Static((PetscFE)obj, 1, &x[fieldOffset], &qgeom, q, interpolant)); 228463a3b9bcSJacob Faibussowitsch else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, field); 22851555c271SMatthew G. Knepley for (fc = 0; fc < Nc; ++fc) { 228653d2db2dSJoe Wallwork const PetscReal wt = quadWeights[q * qNc + qc]; 22871555c271SMatthew G. Knepley 22884bee2e38SMatthew G. Knepley for (d = 0; d < coordDim; ++d) grad[fc * coordDim + d] += interpolant[fc * dim + d] * wt * fegeom.detJ[q]; 22891555c271SMatthew G. Knepley } 22904bee2e38SMatthew G. Knepley vol += quadWeights[q * qNc] * fegeom.detJ[q]; 22911555c271SMatthew G. Knepley } 22921555c271SMatthew G. Knepley fieldOffset += Nb; 22931555c271SMatthew G. Knepley qc += Nc; 22941555c271SMatthew G. Knepley } 22959566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(dm, NULL, locX, cell, NULL, &x)); 2296f8527842SMatthew G. Knepley for (fc = 0; fc < numComponents; ++fc) { 2297ad540459SPierre Jolivet for (d = 0; d < coordDim; ++d) gradsum[fc * coordDim + d] += grad[fc * coordDim + d]; 2298f8527842SMatthew G. Knepley } 2299f8527842SMatthew G. Knepley volsum += vol; 2300db1066baSMatthew G. Knepley if (debug) { 23019566063dSJacob Faibussowitsch PetscCall(PetscPrintf(PETSC_COMM_SELF, "Vertex %" PetscInt_FMT " Cell %" PetscInt_FMT " gradient: [", v, cell)); 23021555c271SMatthew G. Knepley for (fc = 0; fc < numComponents; ++fc) { 23031555c271SMatthew G. Knepley for (d = 0; d < coordDim; ++d) { 23049566063dSJacob Faibussowitsch if (fc || d > 0) PetscCall(PetscPrintf(PETSC_COMM_SELF, ", ")); 23059566063dSJacob Faibussowitsch PetscCall(PetscPrintf(PETSC_COMM_SELF, "%g", (double)PetscRealPart(grad[fc * coordDim + d]))); 23061555c271SMatthew G. Knepley } 23071555c271SMatthew G. Knepley } 23089566063dSJacob Faibussowitsch PetscCall(PetscPrintf(PETSC_COMM_SELF, "]\n")); 2309db1066baSMatthew G. Knepley } 23101555c271SMatthew G. Knepley } 23111555c271SMatthew G. Knepley for (fc = 0; fc < numComponents; ++fc) { 23121555c271SMatthew G. Knepley for (d = 0; d < coordDim; ++d) gradsum[fc * coordDim + d] /= volsum; 23131555c271SMatthew G. Knepley } 23149566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dm, v, PETSC_FALSE, &starSize, &star)); 23159566063dSJacob Faibussowitsch PetscCall(DMPlexVecSetClosure(dmC, NULL, locC, v, gradsum, INSERT_VALUES)); 23161555c271SMatthew G. Knepley } 23179566063dSJacob Faibussowitsch PetscCall(PetscFree6(gradsum, interpolant, coords, fegeom.detJ, fegeom.J, fegeom.invJ)); 23183ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 23191555c271SMatthew G. Knepley } 23201555c271SMatthew G. Knepley 23216493148fSStefano Zampini PetscErrorCode DMPlexComputeIntegral_Internal(DM dm, Vec locX, PetscInt cStart, PetscInt cEnd, PetscScalar *cintegral, void *user) 2322d71ae5a4SJacob Faibussowitsch { 2323cbf8eb3cSStefano Zampini DM dmAux = NULL, plexA = NULL; 232461aaff12SToby Isaac PetscDS prob, probAux = NULL; 232573d901b8SMatthew G. Knepley PetscSection section, sectionAux; 23266493148fSStefano Zampini Vec locA; 2327c330f8ffSToby Isaac PetscInt dim, numCells = cEnd - cStart, c, f; 2328c330f8ffSToby Isaac PetscBool useFVM = PETSC_FALSE; 2329338f77d5SMatthew G. Knepley /* DS */ 2330338f77d5SMatthew G. Knepley PetscInt Nf, totDim, *uOff, *uOff_x, numConstants; 2331338f77d5SMatthew G. Knepley PetscInt NfAux, totDimAux, *aOff; 23328e3a54c0SPierre Jolivet PetscScalar *u, *a = NULL; 2333338f77d5SMatthew G. Knepley const PetscScalar *constants; 2334338f77d5SMatthew G. Knepley /* Geometry */ 2335c330f8ffSToby Isaac PetscFEGeom *cgeomFEM; 2336338f77d5SMatthew G. Knepley DM dmGrad; 2337c330f8ffSToby Isaac PetscQuadrature affineQuad = NULL; 2338338f77d5SMatthew G. Knepley Vec cellGeometryFVM = NULL, faceGeometryFVM = NULL, locGrad = NULL; 2339b5a3613cSMatthew G. Knepley PetscFVCellGeom *cgeomFVM; 2340338f77d5SMatthew G. Knepley const PetscScalar *lgrad; 2341b7260050SToby Isaac PetscInt maxDegree; 2342c330f8ffSToby Isaac DMField coordField; 2343c330f8ffSToby Isaac IS cellIS; 234473d901b8SMatthew G. Knepley 234573d901b8SMatthew G. Knepley PetscFunctionBegin; 23469566063dSJacob Faibussowitsch PetscCall(DMGetDS(dm, &prob)); 23479566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 23489566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, §ion)); 23499566063dSJacob Faibussowitsch PetscCall(DMGetNumFields(dm, &Nf)); 2350338f77d5SMatthew G. Knepley /* Determine which discretizations we have */ 2351b5a3613cSMatthew G. Knepley for (f = 0; f < Nf; ++f) { 2352b5a3613cSMatthew G. Knepley PetscObject obj; 2353b5a3613cSMatthew G. Knepley PetscClassId id; 2354b5a3613cSMatthew G. Knepley 23559566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(prob, f, &obj)); 23569566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 2357338f77d5SMatthew G. Knepley if (id == PETSCFV_CLASSID) useFVM = PETSC_TRUE; 2358338f77d5SMatthew G. Knepley } 2359338f77d5SMatthew G. Knepley /* Read DS information */ 23609566063dSJacob Faibussowitsch PetscCall(PetscDSGetTotalDimension(prob, &totDim)); 23619566063dSJacob Faibussowitsch PetscCall(PetscDSGetComponentOffsets(prob, &uOff)); 23629566063dSJacob Faibussowitsch PetscCall(PetscDSGetComponentDerivativeOffsets(prob, &uOff_x)); 23639566063dSJacob Faibussowitsch PetscCall(ISCreateStride(PETSC_COMM_SELF, numCells, cStart, 1, &cellIS)); 23649566063dSJacob Faibussowitsch PetscCall(PetscDSGetConstants(prob, &numConstants, &constants)); 2365338f77d5SMatthew G. Knepley /* Read Auxiliary DS information */ 23669566063dSJacob Faibussowitsch PetscCall(DMGetAuxiliaryVec(dm, NULL, 0, 0, &locA)); 23679a2a23afSMatthew G. Knepley if (locA) { 23689566063dSJacob Faibussowitsch PetscCall(VecGetDM(locA, &dmAux)); 2369cbf8eb3cSStefano Zampini PetscCall(DMConvert(dmAux, DMPLEX, &plexA)); 23709566063dSJacob Faibussowitsch PetscCall(DMGetDS(dmAux, &probAux)); 23719566063dSJacob Faibussowitsch PetscCall(PetscDSGetNumFields(probAux, &NfAux)); 23729566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dmAux, §ionAux)); 23739566063dSJacob Faibussowitsch PetscCall(PetscDSGetTotalDimension(probAux, &totDimAux)); 23749566063dSJacob Faibussowitsch PetscCall(PetscDSGetComponentOffsets(probAux, &aOff)); 2375338f77d5SMatthew G. Knepley } 2376338f77d5SMatthew G. Knepley /* Allocate data arrays */ 23779566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(numCells * totDim, &u)); 23789566063dSJacob Faibussowitsch if (dmAux) PetscCall(PetscMalloc1(numCells * totDimAux, &a)); 2379338f77d5SMatthew G. Knepley /* Read out geometry */ 23809566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateField(dm, &coordField)); 23819566063dSJacob Faibussowitsch PetscCall(DMFieldGetDegree(coordField, cellIS, NULL, &maxDegree)); 2382b7260050SToby Isaac if (maxDegree <= 1) { 23839566063dSJacob Faibussowitsch PetscCall(DMFieldCreateDefaultQuadrature(coordField, cellIS, &affineQuad)); 238448a46eb9SPierre Jolivet if (affineQuad) PetscCall(DMFieldCreateFEGeom(coordField, cellIS, affineQuad, PETSC_FALSE, &cgeomFEM)); 2385b5a3613cSMatthew G. Knepley } 2386b5a3613cSMatthew G. Knepley if (useFVM) { 2387338f77d5SMatthew G. Knepley PetscFV fv = NULL; 2388b5a3613cSMatthew G. Knepley Vec grad; 2389b5a3613cSMatthew G. Knepley PetscInt fStart, fEnd; 2390b5a3613cSMatthew G. Knepley PetscBool compGrad; 2391b5a3613cSMatthew G. Knepley 2392338f77d5SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 2393338f77d5SMatthew G. Knepley PetscObject obj; 2394338f77d5SMatthew G. Knepley PetscClassId id; 2395338f77d5SMatthew G. Knepley 23969566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(prob, f, &obj)); 23979566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 23989371c9d4SSatish Balay if (id == PETSCFV_CLASSID) { 23999371c9d4SSatish Balay fv = (PetscFV)obj; 24009371c9d4SSatish Balay break; 24019371c9d4SSatish Balay } 2402338f77d5SMatthew G. Knepley } 24039566063dSJacob Faibussowitsch PetscCall(PetscFVGetComputeGradients(fv, &compGrad)); 24049566063dSJacob Faibussowitsch PetscCall(PetscFVSetComputeGradients(fv, PETSC_TRUE)); 24059566063dSJacob Faibussowitsch PetscCall(DMPlexComputeGeometryFVM(dm, &cellGeometryFVM, &faceGeometryFVM)); 24069566063dSJacob Faibussowitsch PetscCall(DMPlexComputeGradientFVM(dm, fv, faceGeometryFVM, cellGeometryFVM, &dmGrad)); 24079566063dSJacob Faibussowitsch PetscCall(PetscFVSetComputeGradients(fv, compGrad)); 24089566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(cellGeometryFVM, (const PetscScalar **)&cgeomFVM)); 2409b5a3613cSMatthew G. Knepley /* Reconstruct and limit cell gradients */ 24109566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(dm, 1, &fStart, &fEnd)); 24119566063dSJacob Faibussowitsch PetscCall(DMGetGlobalVector(dmGrad, &grad)); 24129566063dSJacob Faibussowitsch PetscCall(DMPlexReconstructGradients_Internal(dm, fv, fStart, fEnd, faceGeometryFVM, cellGeometryFVM, locX, grad)); 2413b5a3613cSMatthew G. Knepley /* Communicate gradient values */ 24149566063dSJacob Faibussowitsch PetscCall(DMGetLocalVector(dmGrad, &locGrad)); 24159566063dSJacob Faibussowitsch PetscCall(DMGlobalToLocalBegin(dmGrad, grad, INSERT_VALUES, locGrad)); 24169566063dSJacob Faibussowitsch PetscCall(DMGlobalToLocalEnd(dmGrad, grad, INSERT_VALUES, locGrad)); 24179566063dSJacob Faibussowitsch PetscCall(DMRestoreGlobalVector(dmGrad, &grad)); 2418b5a3613cSMatthew G. Knepley /* Handle non-essential (e.g. outflow) boundary values */ 24199566063dSJacob Faibussowitsch PetscCall(DMPlexInsertBoundaryValues(dm, PETSC_FALSE, locX, 0.0, faceGeometryFVM, cellGeometryFVM, locGrad)); 24209566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(locGrad, &lgrad)); 2421b5a3613cSMatthew G. Knepley } 2422338f77d5SMatthew G. Knepley /* Read out data from inputs */ 242373d901b8SMatthew G. Knepley for (c = cStart; c < cEnd; ++c) { 242473d901b8SMatthew G. Knepley PetscScalar *x = NULL; 242573d901b8SMatthew G. Knepley PetscInt i; 242673d901b8SMatthew G. Knepley 24279566063dSJacob Faibussowitsch PetscCall(DMPlexVecGetClosure(dm, section, locX, c, NULL, &x)); 24280f2d7e86SMatthew G. Knepley for (i = 0; i < totDim; ++i) u[c * totDim + i] = x[i]; 24299566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(dm, section, locX, c, NULL, &x)); 243073d901b8SMatthew G. Knepley if (dmAux) { 2431cbf8eb3cSStefano Zampini PetscCall(DMPlexVecGetClosure(plexA, sectionAux, locA, c, NULL, &x)); 24320f2d7e86SMatthew G. Knepley for (i = 0; i < totDimAux; ++i) a[c * totDimAux + i] = x[i]; 2433cbf8eb3cSStefano Zampini PetscCall(DMPlexVecRestoreClosure(plexA, sectionAux, locA, c, NULL, &x)); 243473d901b8SMatthew G. Knepley } 243573d901b8SMatthew G. Knepley } 2436338f77d5SMatthew G. Knepley /* Do integration for each field */ 243773d901b8SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 2438c1f031eeSMatthew G. Knepley PetscObject obj; 2439c1f031eeSMatthew G. Knepley PetscClassId id; 2440c1f031eeSMatthew G. Knepley PetscInt numChunks, numBatches, batchSize, numBlocks, blockSize, Ne, Nr, offset; 244173d901b8SMatthew G. Knepley 24429566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(prob, f, &obj)); 24439566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 2444c1f031eeSMatthew G. Knepley if (id == PETSCFE_CLASSID) { 2445c1f031eeSMatthew G. Knepley PetscFE fe = (PetscFE)obj; 2446c1f031eeSMatthew G. Knepley PetscQuadrature q; 2447c330f8ffSToby Isaac PetscFEGeom *chunkGeom = NULL; 2448c1f031eeSMatthew G. Knepley PetscInt Nq, Nb; 2449c1f031eeSMatthew G. Knepley 24509566063dSJacob Faibussowitsch PetscCall(PetscFEGetTileSizes(fe, NULL, &numBlocks, NULL, &numBatches)); 24519566063dSJacob Faibussowitsch PetscCall(PetscFEGetQuadrature(fe, &q)); 24529566063dSJacob Faibussowitsch PetscCall(PetscQuadratureGetData(q, NULL, NULL, &Nq, NULL, NULL)); 24539566063dSJacob Faibussowitsch PetscCall(PetscFEGetDimension(fe, &Nb)); 2454c1f031eeSMatthew G. Knepley blockSize = Nb * Nq; 245573d901b8SMatthew G. Knepley batchSize = numBlocks * blockSize; 24569566063dSJacob Faibussowitsch PetscCall(PetscFESetTileSizes(fe, blockSize, numBlocks, batchSize, numBatches)); 245773d901b8SMatthew G. Knepley numChunks = numCells / (numBatches * batchSize); 245873d901b8SMatthew G. Knepley Ne = numChunks * numBatches * batchSize; 245973d901b8SMatthew G. Knepley Nr = numCells % (numBatches * batchSize); 246073d901b8SMatthew G. Knepley offset = numCells - Nr; 246148a46eb9SPierre Jolivet if (!affineQuad) PetscCall(DMFieldCreateFEGeom(coordField, cellIS, q, PETSC_FALSE, &cgeomFEM)); 24629566063dSJacob Faibussowitsch PetscCall(PetscFEGeomGetChunk(cgeomFEM, 0, offset, &chunkGeom)); 24639566063dSJacob Faibussowitsch PetscCall(PetscFEIntegrate(prob, f, Ne, chunkGeom, u, probAux, a, cintegral)); 24649566063dSJacob Faibussowitsch PetscCall(PetscFEGeomGetChunk(cgeomFEM, offset, numCells, &chunkGeom)); 24658e3a54c0SPierre Jolivet PetscCall(PetscFEIntegrate(prob, f, Nr, chunkGeom, &u[offset * totDim], probAux, PetscSafePointerPlusOffset(a, offset * totDimAux), &cintegral[offset * Nf])); 24669566063dSJacob Faibussowitsch PetscCall(PetscFEGeomRestoreChunk(cgeomFEM, offset, numCells, &chunkGeom)); 246748a46eb9SPierre Jolivet if (!affineQuad) PetscCall(PetscFEGeomDestroy(&cgeomFEM)); 2468c1f031eeSMatthew G. Knepley } else if (id == PETSCFV_CLASSID) { 2469c1f031eeSMatthew G. Knepley PetscInt foff; 2470420e96edSMatthew G. Knepley PetscPointFunc obj_func; 2471c1f031eeSMatthew G. Knepley 24729566063dSJacob Faibussowitsch PetscCall(PetscDSGetObjective(prob, f, &obj_func)); 24739566063dSJacob Faibussowitsch PetscCall(PetscDSGetFieldOffset(prob, f, &foff)); 2474c1f031eeSMatthew G. Knepley if (obj_func) { 2475c1f031eeSMatthew G. Knepley for (c = 0; c < numCells; ++c) { 2476b5a3613cSMatthew G. Knepley PetscScalar *u_x; 2477d627b919SMatthew G. Knepley PetscScalar lint = 0.; 2478b5a3613cSMatthew G. Knepley 24799566063dSJacob Faibussowitsch PetscCall(DMPlexPointLocalRead(dmGrad, c, lgrad, &u_x)); 248055bffe1bSPierre Jolivet obj_func(dim, Nf, NfAux, uOff, uOff_x, &u[totDim * c + foff], NULL, u_x, aOff, NULL, PetscSafePointerPlusOffset(a, totDimAux * c), NULL, NULL, 0.0, cgeomFVM[c].centroid, numConstants, constants, &lint); 2481338f77d5SMatthew G. Knepley cintegral[c * Nf + f] += PetscRealPart(lint) * cgeomFVM[c].volume; 248273d901b8SMatthew G. Knepley } 2483c1f031eeSMatthew G. Knepley } 248463a3b9bcSJacob Faibussowitsch } else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, f); 2485c1f031eeSMatthew G. Knepley } 2486338f77d5SMatthew G. Knepley /* Cleanup data arrays */ 2487b5a3613cSMatthew G. Knepley if (useFVM) { 24889566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(locGrad, &lgrad)); 24899566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(cellGeometryFVM, (const PetscScalar **)&cgeomFVM)); 24909566063dSJacob Faibussowitsch PetscCall(DMRestoreLocalVector(dmGrad, &locGrad)); 24919566063dSJacob Faibussowitsch PetscCall(VecDestroy(&faceGeometryFVM)); 24929566063dSJacob Faibussowitsch PetscCall(VecDestroy(&cellGeometryFVM)); 24939566063dSJacob Faibussowitsch PetscCall(DMDestroy(&dmGrad)); 2494b5a3613cSMatthew G. Knepley } 24959566063dSJacob Faibussowitsch if (dmAux) PetscCall(PetscFree(a)); 2496cbf8eb3cSStefano Zampini PetscCall(DMDestroy(&plexA)); 24979566063dSJacob Faibussowitsch PetscCall(PetscFree(u)); 2498338f77d5SMatthew G. Knepley /* Cleanup */ 249948a46eb9SPierre Jolivet if (affineQuad) PetscCall(PetscFEGeomDestroy(&cgeomFEM)); 25009566063dSJacob Faibussowitsch PetscCall(PetscQuadratureDestroy(&affineQuad)); 25019566063dSJacob Faibussowitsch PetscCall(ISDestroy(&cellIS)); 25023ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2503338f77d5SMatthew G. Knepley } 2504338f77d5SMatthew G. Knepley 2505338f77d5SMatthew G. Knepley /*@ 2506338f77d5SMatthew G. Knepley DMPlexComputeIntegralFEM - Form the integral over the domain from the global input X using pointwise functions specified by the user 2507338f77d5SMatthew G. Knepley 2508338f77d5SMatthew G. Knepley Input Parameters: 2509338f77d5SMatthew G. Knepley + dm - The mesh 2510338f77d5SMatthew G. Knepley . X - Global input vector 2511338f77d5SMatthew G. Knepley - user - The user context 2512338f77d5SMatthew G. Knepley 2513338f77d5SMatthew G. Knepley Output Parameter: 2514338f77d5SMatthew G. Knepley . integral - Integral for each field 2515338f77d5SMatthew G. Knepley 2516338f77d5SMatthew G. Knepley Level: developer 2517338f77d5SMatthew G. Knepley 25181cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexSNESComputeResidualFEM()` 2519338f77d5SMatthew G. Knepley @*/ 2520d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeIntegralFEM(DM dm, Vec X, PetscScalar *integral, void *user) 2521d71ae5a4SJacob Faibussowitsch { 2522cbf8eb3cSStefano Zampini PetscInt printFEM; 2523b8feb594SMatthew G. Knepley PetscScalar *cintegral, *lintegral; 2524412e9a14SMatthew G. Knepley PetscInt Nf, f, cellHeight, cStart, cEnd, cell; 25256493148fSStefano Zampini Vec locX; 2526338f77d5SMatthew G. Knepley 2527338f77d5SMatthew G. Knepley PetscFunctionBegin; 2528338f77d5SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 2529338f77d5SMatthew G. Knepley PetscValidHeaderSpecific(X, VEC_CLASSID, 2); 25304f572ea9SToby Isaac PetscAssertPointer(integral, 3); 25319566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DMPLEX_IntegralFEM, dm, 0, 0, 0)); 2532cbf8eb3cSStefano Zampini PetscCall(DMPlexConvertPlex(dm, &dm, PETSC_TRUE)); 25339566063dSJacob Faibussowitsch PetscCall(DMGetNumFields(dm, &Nf)); 25349566063dSJacob Faibussowitsch PetscCall(DMPlexGetVTKCellHeight(dm, &cellHeight)); 25359566063dSJacob Faibussowitsch PetscCall(DMPlexGetSimplexOrBoxCells(dm, cellHeight, &cStart, &cEnd)); 2536338f77d5SMatthew G. Knepley /* TODO Introduce a loop over large chunks (right now this is a single chunk) */ 25379566063dSJacob Faibussowitsch PetscCall(PetscCalloc2(Nf, &lintegral, (cEnd - cStart) * Nf, &cintegral)); 25386493148fSStefano Zampini /* Get local solution with boundary values */ 25396493148fSStefano Zampini PetscCall(DMGetLocalVector(dm, &locX)); 25406493148fSStefano Zampini PetscCall(DMPlexInsertBoundaryValues(dm, PETSC_TRUE, locX, 0.0, NULL, NULL, NULL)); 25416493148fSStefano Zampini PetscCall(DMGlobalToLocalBegin(dm, X, INSERT_VALUES, locX)); 25426493148fSStefano Zampini PetscCall(DMGlobalToLocalEnd(dm, X, INSERT_VALUES, locX)); 25436493148fSStefano Zampini PetscCall(DMPlexComputeIntegral_Internal(dm, locX, cStart, cEnd, cintegral, user)); 25446493148fSStefano Zampini PetscCall(DMRestoreLocalVector(dm, &locX)); 2545cbf8eb3cSStefano Zampini printFEM = ((DM_Plex *)dm->data)->printFEM; 2546338f77d5SMatthew G. Knepley /* Sum up values */ 2547338f77d5SMatthew G. Knepley for (cell = cStart; cell < cEnd; ++cell) { 2548338f77d5SMatthew G. Knepley const PetscInt c = cell - cStart; 2549338f77d5SMatthew G. Knepley 2550cbf8eb3cSStefano Zampini if (printFEM > 1) PetscCall(DMPrintCellVector(cell, "Cell Integral", Nf, &cintegral[c * Nf])); 2551b8feb594SMatthew G. Knepley for (f = 0; f < Nf; ++f) lintegral[f] += cintegral[c * Nf + f]; 2552338f77d5SMatthew G. Knepley } 25531c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(lintegral, integral, Nf, MPIU_SCALAR, MPIU_SUM, PetscObjectComm((PetscObject)dm))); 2554cbf8eb3cSStefano Zampini if (printFEM) { 25559566063dSJacob Faibussowitsch PetscCall(PetscPrintf(PetscObjectComm((PetscObject)dm), "Integral:")); 25569566063dSJacob Faibussowitsch for (f = 0; f < Nf; ++f) PetscCall(PetscPrintf(PetscObjectComm((PetscObject)dm), " %g", (double)PetscRealPart(integral[f]))); 25579566063dSJacob Faibussowitsch PetscCall(PetscPrintf(PetscObjectComm((PetscObject)dm), "\n")); 255873d901b8SMatthew G. Knepley } 25599566063dSJacob Faibussowitsch PetscCall(PetscFree2(lintegral, cintegral)); 25609566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DMPLEX_IntegralFEM, dm, 0, 0, 0)); 2561cbf8eb3cSStefano Zampini PetscCall(DMDestroy(&dm)); 25623ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2563338f77d5SMatthew G. Knepley } 2564338f77d5SMatthew G. Knepley 2565338f77d5SMatthew G. Knepley /*@ 2566338f77d5SMatthew G. Knepley DMPlexComputeCellwiseIntegralFEM - Form the vector of cellwise integrals F from the global input X using pointwise functions specified by the user 2567338f77d5SMatthew G. Knepley 2568338f77d5SMatthew G. Knepley Input Parameters: 2569338f77d5SMatthew G. Knepley + dm - The mesh 2570338f77d5SMatthew G. Knepley . X - Global input vector 2571338f77d5SMatthew G. Knepley - user - The user context 2572338f77d5SMatthew G. Knepley 2573338f77d5SMatthew G. Knepley Output Parameter: 257460225df5SJacob Faibussowitsch . F - Cellwise integrals for each field 2575338f77d5SMatthew G. Knepley 2576338f77d5SMatthew G. Knepley Level: developer 2577338f77d5SMatthew G. Knepley 25781cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexSNESComputeResidualFEM()` 2579338f77d5SMatthew G. Knepley @*/ 2580d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeCellwiseIntegralFEM(DM dm, Vec X, Vec F, void *user) 2581d71ae5a4SJacob Faibussowitsch { 2582cbf8eb3cSStefano Zampini PetscInt printFEM; 2583338f77d5SMatthew G. Knepley DM dmF; 25849c8ab049SStefano Zampini PetscSection sectionF = NULL; 2585338f77d5SMatthew G. Knepley PetscScalar *cintegral, *af; 25869c8ab049SStefano Zampini PetscInt Nf, f, cellHeight, cStart, cEnd, cell, n; 25876493148fSStefano Zampini Vec locX; 2588338f77d5SMatthew G. Knepley 2589338f77d5SMatthew G. Knepley PetscFunctionBegin; 2590338f77d5SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 2591338f77d5SMatthew G. Knepley PetscValidHeaderSpecific(X, VEC_CLASSID, 2); 2592338f77d5SMatthew G. Knepley PetscValidHeaderSpecific(F, VEC_CLASSID, 3); 25939566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DMPLEX_IntegralFEM, dm, 0, 0, 0)); 2594cbf8eb3cSStefano Zampini PetscCall(DMPlexConvertPlex(dm, &dm, PETSC_TRUE)); 25959566063dSJacob Faibussowitsch PetscCall(DMGetNumFields(dm, &Nf)); 25969566063dSJacob Faibussowitsch PetscCall(DMPlexGetVTKCellHeight(dm, &cellHeight)); 25979566063dSJacob Faibussowitsch PetscCall(DMPlexGetSimplexOrBoxCells(dm, cellHeight, &cStart, &cEnd)); 2598338f77d5SMatthew G. Knepley /* TODO Introduce a loop over large chunks (right now this is a single chunk) */ 25999566063dSJacob Faibussowitsch PetscCall(PetscCalloc1((cEnd - cStart) * Nf, &cintegral)); 26006493148fSStefano Zampini /* Get local solution with boundary values */ 26016493148fSStefano Zampini PetscCall(DMGetLocalVector(dm, &locX)); 26026493148fSStefano Zampini PetscCall(DMPlexInsertBoundaryValues(dm, PETSC_TRUE, locX, 0.0, NULL, NULL, NULL)); 26036493148fSStefano Zampini PetscCall(DMGlobalToLocalBegin(dm, X, INSERT_VALUES, locX)); 26046493148fSStefano Zampini PetscCall(DMGlobalToLocalEnd(dm, X, INSERT_VALUES, locX)); 26056493148fSStefano Zampini PetscCall(DMPlexComputeIntegral_Internal(dm, locX, cStart, cEnd, cintegral, user)); 26066493148fSStefano Zampini PetscCall(DMRestoreLocalVector(dm, &locX)); 2607338f77d5SMatthew G. Knepley /* Put values in F */ 26089566063dSJacob Faibussowitsch PetscCall(VecGetArray(F, &af)); 26099c8ab049SStefano Zampini PetscCall(VecGetDM(F, &dmF)); 26109c8ab049SStefano Zampini if (dmF) PetscCall(DMGetLocalSection(dmF, §ionF)); 26119c8ab049SStefano Zampini PetscCall(VecGetLocalSize(F, &n)); 26129c8ab049SStefano Zampini PetscCheck(n >= (cEnd - cStart) * Nf, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Vector size %" PetscInt_FMT " < %" PetscInt_FMT, n, (cEnd - cStart) * Nf); 2613cbf8eb3cSStefano Zampini printFEM = ((DM_Plex *)dm->data)->printFEM; 2614338f77d5SMatthew G. Knepley for (cell = cStart; cell < cEnd; ++cell) { 2615338f77d5SMatthew G. Knepley const PetscInt c = cell - cStart; 26169c8ab049SStefano Zampini PetscInt dof = Nf, off = c * Nf; 2617338f77d5SMatthew G. Knepley 2618cbf8eb3cSStefano Zampini if (printFEM > 1) PetscCall(DMPrintCellVector(cell, "Cell Integral", Nf, &cintegral[c * Nf])); 26199c8ab049SStefano Zampini if (sectionF) { 26209566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(sectionF, cell, &dof)); 26219566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(sectionF, cell, &off)); 26229c8ab049SStefano Zampini } 262363a3b9bcSJacob Faibussowitsch PetscCheck(dof == Nf, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "The number of cell dofs %" PetscInt_FMT " != %" PetscInt_FMT, dof, Nf); 2624338f77d5SMatthew G. Knepley for (f = 0; f < Nf; ++f) af[off + f] = cintegral[c * Nf + f]; 2625338f77d5SMatthew G. Knepley } 26269566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(F, &af)); 26279566063dSJacob Faibussowitsch PetscCall(PetscFree(cintegral)); 26289566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DMPLEX_IntegralFEM, dm, 0, 0, 0)); 2629cbf8eb3cSStefano Zampini PetscCall(DMDestroy(&dm)); 26303ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 263173d901b8SMatthew G. Knepley } 263273d901b8SMatthew G. Knepley 263379ab67a3SMatthew G. Knepley static PetscErrorCode DMPlexComputeBdIntegral_Internal(DM dm, Vec locX, IS pointIS, void (**funcs)(PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], PetscReal, const PetscReal[], const PetscReal[], PetscInt, const PetscScalar[], PetscScalar[]), PetscScalar *fintegral, void *user) 2634d71ae5a4SJacob Faibussowitsch { 26359b6f715bSMatthew G. Knepley DM plex = NULL, plexA = NULL; 2636a6e0b375SMatthew G. Knepley DMEnclosureType encAux; 26379b6f715bSMatthew G. Knepley PetscDS prob, probAux = NULL; 26389b6f715bSMatthew G. Knepley PetscSection section, sectionAux = NULL; 26399b6f715bSMatthew G. Knepley Vec locA = NULL; 26409b6f715bSMatthew G. Knepley DMField coordField; 26419b6f715bSMatthew G. Knepley PetscInt Nf, totDim, *uOff, *uOff_x; 26429b6f715bSMatthew G. Knepley PetscInt NfAux = 0, totDimAux = 0, *aOff = NULL; 26439b6f715bSMatthew G. Knepley PetscScalar *u, *a = NULL; 264464c72086SMatthew G. Knepley const PetscScalar *constants; 26459b6f715bSMatthew G. Knepley PetscInt numConstants, f; 264664c72086SMatthew G. Knepley 264764c72086SMatthew G. Knepley PetscFunctionBegin; 26489566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateField(dm, &coordField)); 26499566063dSJacob Faibussowitsch PetscCall(DMConvert(dm, DMPLEX, &plex)); 26509566063dSJacob Faibussowitsch PetscCall(DMGetDS(dm, &prob)); 26519566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, §ion)); 26529566063dSJacob Faibussowitsch PetscCall(PetscSectionGetNumFields(section, &Nf)); 265364c72086SMatthew G. Knepley /* Determine which discretizations we have */ 26549b6f715bSMatthew G. Knepley for (f = 0; f < Nf; ++f) { 265564c72086SMatthew G. Knepley PetscObject obj; 265664c72086SMatthew G. Knepley PetscClassId id; 265764c72086SMatthew G. Knepley 26589566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(prob, f, &obj)); 26599566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 266063a3b9bcSJacob Faibussowitsch PetscCheck(id != PETSCFV_CLASSID, PetscObjectComm((PetscObject)dm), PETSC_ERR_SUP, "Not supported for FVM (field %" PetscInt_FMT ")", f); 266164c72086SMatthew G. Knepley } 266264c72086SMatthew G. Knepley /* Read DS information */ 26639566063dSJacob Faibussowitsch PetscCall(PetscDSGetTotalDimension(prob, &totDim)); 26649566063dSJacob Faibussowitsch PetscCall(PetscDSGetComponentOffsets(prob, &uOff)); 26659566063dSJacob Faibussowitsch PetscCall(PetscDSGetComponentDerivativeOffsets(prob, &uOff_x)); 26669566063dSJacob Faibussowitsch PetscCall(PetscDSGetConstants(prob, &numConstants, &constants)); 266764c72086SMatthew G. Knepley /* Read Auxiliary DS information */ 26689566063dSJacob Faibussowitsch PetscCall(DMGetAuxiliaryVec(dm, NULL, 0, 0, &locA)); 26699b6f715bSMatthew G. Knepley if (locA) { 26709b6f715bSMatthew G. Knepley DM dmAux; 26719b6f715bSMatthew G. Knepley 26729566063dSJacob Faibussowitsch PetscCall(VecGetDM(locA, &dmAux)); 26739566063dSJacob Faibussowitsch PetscCall(DMGetEnclosureRelation(dmAux, dm, &encAux)); 26749566063dSJacob Faibussowitsch PetscCall(DMConvert(dmAux, DMPLEX, &plexA)); 26759566063dSJacob Faibussowitsch PetscCall(DMGetDS(dmAux, &probAux)); 26769566063dSJacob Faibussowitsch PetscCall(PetscDSGetNumFields(probAux, &NfAux)); 26779566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dmAux, §ionAux)); 26789566063dSJacob Faibussowitsch PetscCall(PetscDSGetTotalDimension(probAux, &totDimAux)); 26799566063dSJacob Faibussowitsch PetscCall(PetscDSGetComponentOffsets(probAux, &aOff)); 268064c72086SMatthew G. Knepley } 26819b6f715bSMatthew G. Knepley /* Integrate over points */ 26829b6f715bSMatthew G. Knepley { 26839b6f715bSMatthew G. Knepley PetscFEGeom *fgeom, *chunkGeom = NULL; 2684b7260050SToby Isaac PetscInt maxDegree; 26859b6f715bSMatthew G. Knepley PetscQuadrature qGeom = NULL; 26869b6f715bSMatthew G. Knepley const PetscInt *points; 26879b6f715bSMatthew G. Knepley PetscInt numFaces, face, Nq, field; 26889b6f715bSMatthew G. Knepley PetscInt numChunks, chunkSize, chunk, Nr, offset; 268964c72086SMatthew G. Knepley 26909566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(pointIS, &numFaces)); 26919566063dSJacob Faibussowitsch PetscCall(ISGetIndices(pointIS, &points)); 26929566063dSJacob Faibussowitsch PetscCall(PetscCalloc2(numFaces * totDim, &u, locA ? numFaces * totDimAux : 0, &a)); 26939566063dSJacob Faibussowitsch PetscCall(DMFieldGetDegree(coordField, pointIS, NULL, &maxDegree)); 269479ab67a3SMatthew G. Knepley for (face = 0; face < numFaces; ++face) { 269579ab67a3SMatthew G. Knepley const PetscInt point = points[face], *support; 269679ab67a3SMatthew G. Knepley PetscScalar *x = NULL; 269779ab67a3SMatthew G. Knepley 269879ab67a3SMatthew G. Knepley PetscCall(DMPlexGetSupport(dm, point, &support)); 269979ab67a3SMatthew G. Knepley PetscCall(DMPlexVecGetClosure(plex, section, locX, support[0], NULL, &x)); 270079ab67a3SMatthew G. Knepley for (PetscInt i = 0; i < totDim; ++i) u[face * totDim + i] = x[i]; 270179ab67a3SMatthew G. Knepley PetscCall(DMPlexVecRestoreClosure(plex, section, locX, support[0], NULL, &x)); 270279ab67a3SMatthew G. Knepley if (locA) { 270379ab67a3SMatthew G. Knepley PetscInt subp; 270479ab67a3SMatthew G. Knepley PetscCall(DMGetEnclosurePoint(plexA, dm, encAux, support[0], &subp)); 270579ab67a3SMatthew G. Knepley PetscCall(DMPlexVecGetClosure(plexA, sectionAux, locA, subp, NULL, &x)); 270679ab67a3SMatthew G. Knepley for (PetscInt i = 0; i < totDimAux; ++i) a[f * totDimAux + i] = x[i]; 270779ab67a3SMatthew G. Knepley PetscCall(DMPlexVecRestoreClosure(plexA, sectionAux, locA, subp, NULL, &x)); 270879ab67a3SMatthew G. Knepley } 270979ab67a3SMatthew G. Knepley } 271064c72086SMatthew G. Knepley for (field = 0; field < Nf; ++field) { 271164c72086SMatthew G. Knepley PetscFE fe; 271264c72086SMatthew G. Knepley 27139566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(prob, field, (PetscObject *)&fe)); 27149566063dSJacob Faibussowitsch if (maxDegree <= 1) PetscCall(DMFieldCreateDefaultQuadrature(coordField, pointIS, &qGeom)); 27159b6f715bSMatthew G. Knepley if (!qGeom) { 27169566063dSJacob Faibussowitsch PetscCall(PetscFEGetFaceQuadrature(fe, &qGeom)); 27179566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)qGeom)); 27189b6f715bSMatthew G. Knepley } 27199566063dSJacob Faibussowitsch PetscCall(PetscQuadratureGetData(qGeom, NULL, NULL, &Nq, NULL, NULL)); 27209566063dSJacob Faibussowitsch PetscCall(DMPlexGetFEGeom(coordField, pointIS, qGeom, PETSC_TRUE, &fgeom)); 27219b6f715bSMatthew G. Knepley /* Get blocking */ 27229b6f715bSMatthew G. Knepley { 27239b6f715bSMatthew G. Knepley PetscQuadrature q; 27249b6f715bSMatthew G. Knepley PetscInt numBatches, batchSize, numBlocks, blockSize; 27259b6f715bSMatthew G. Knepley PetscInt Nq, Nb; 27269b6f715bSMatthew G. Knepley 27279566063dSJacob Faibussowitsch PetscCall(PetscFEGetTileSizes(fe, NULL, &numBlocks, NULL, &numBatches)); 27289566063dSJacob Faibussowitsch PetscCall(PetscFEGetQuadrature(fe, &q)); 27299566063dSJacob Faibussowitsch PetscCall(PetscQuadratureGetData(q, NULL, NULL, &Nq, NULL, NULL)); 27309566063dSJacob Faibussowitsch PetscCall(PetscFEGetDimension(fe, &Nb)); 273164c72086SMatthew G. Knepley blockSize = Nb * Nq; 273264c72086SMatthew G. Knepley batchSize = numBlocks * blockSize; 27339b6f715bSMatthew G. Knepley chunkSize = numBatches * batchSize; 27349566063dSJacob Faibussowitsch PetscCall(PetscFESetTileSizes(fe, blockSize, numBlocks, batchSize, numBatches)); 27359b6f715bSMatthew G. Knepley numChunks = numFaces / chunkSize; 27369b6f715bSMatthew G. Knepley Nr = numFaces % chunkSize; 273764c72086SMatthew G. Knepley offset = numFaces - Nr; 273864c72086SMatthew G. Knepley } 27399b6f715bSMatthew G. Knepley /* Do integration for each field */ 27409b6f715bSMatthew G. Knepley for (chunk = 0; chunk < numChunks; ++chunk) { 27419566063dSJacob Faibussowitsch PetscCall(PetscFEGeomGetChunk(fgeom, chunk * chunkSize, (chunk + 1) * chunkSize, &chunkGeom)); 274279ab67a3SMatthew G. Knepley PetscCall(PetscFEIntegrateBd(prob, field, funcs[field], chunkSize, chunkGeom, &u[chunk * chunkSize * totDim], probAux, PetscSafePointerPlusOffset(a, chunk * chunkSize * totDimAux), &fintegral[chunk * chunkSize * Nf])); 27439566063dSJacob Faibussowitsch PetscCall(PetscFEGeomRestoreChunk(fgeom, 0, offset, &chunkGeom)); 274464c72086SMatthew G. Knepley } 27459566063dSJacob Faibussowitsch PetscCall(PetscFEGeomGetChunk(fgeom, offset, numFaces, &chunkGeom)); 274679ab67a3SMatthew G. Knepley PetscCall(PetscFEIntegrateBd(prob, field, funcs[field], Nr, chunkGeom, &u[offset * totDim], probAux, PetscSafePointerPlusOffset(a, offset * totDimAux), &fintegral[offset * Nf])); 27479566063dSJacob Faibussowitsch PetscCall(PetscFEGeomRestoreChunk(fgeom, offset, numFaces, &chunkGeom)); 274864c72086SMatthew G. Knepley /* Cleanup data arrays */ 27499566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreFEGeom(coordField, pointIS, qGeom, PETSC_TRUE, &fgeom)); 27509566063dSJacob Faibussowitsch PetscCall(PetscQuadratureDestroy(&qGeom)); 275179ab67a3SMatthew G. Knepley } 27529566063dSJacob Faibussowitsch PetscCall(PetscFree2(u, a)); 27539566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(pointIS, &points)); 275464c72086SMatthew G. Knepley } 27559566063dSJacob Faibussowitsch if (plex) PetscCall(DMDestroy(&plex)); 27569566063dSJacob Faibussowitsch if (plexA) PetscCall(DMDestroy(&plexA)); 27573ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 27589b6f715bSMatthew G. Knepley } 27599b6f715bSMatthew G. Knepley 276060225df5SJacob Faibussowitsch /*@C 27619b6f715bSMatthew G. Knepley DMPlexComputeBdIntegral - Form the integral over the specified boundary from the global input X using pointwise functions specified by the user 27629b6f715bSMatthew G. Knepley 27639b6f715bSMatthew G. Knepley Input Parameters: 27649b6f715bSMatthew G. Knepley + dm - The mesh 27659b6f715bSMatthew G. Knepley . X - Global input vector 2766a1cb98faSBarry Smith . label - The boundary `DMLabel` 2767a1cb98faSBarry Smith . numVals - The number of label values to use, or `PETSC_DETERMINE` for all values 2768a1cb98faSBarry Smith . vals - The label values to use, or NULL for all values 276979ab67a3SMatthew G. Knepley . funcs - The functions to integrate along the boundary for each field 27709b6f715bSMatthew G. Knepley - user - The user context 27719b6f715bSMatthew G. Knepley 27729b6f715bSMatthew G. Knepley Output Parameter: 27739b6f715bSMatthew G. Knepley . integral - Integral for each field 27749b6f715bSMatthew G. Knepley 27759b6f715bSMatthew G. Knepley Level: developer 27769b6f715bSMatthew G. Knepley 27771cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexComputeIntegralFEM()`, `DMPlexComputeBdResidualFEM()` 27789b6f715bSMatthew G. Knepley @*/ 277979ab67a3SMatthew G. Knepley PetscErrorCode DMPlexComputeBdIntegral(DM dm, Vec X, DMLabel label, PetscInt numVals, const PetscInt vals[], void (**funcs)(PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], PetscReal, const PetscReal[], const PetscReal[], PetscInt, const PetscScalar[], PetscScalar[]), PetscScalar *integral, void *user) 2780d71ae5a4SJacob Faibussowitsch { 27819b6f715bSMatthew G. Knepley Vec locX; 27829b6f715bSMatthew G. Knepley PetscSection section; 27839b6f715bSMatthew G. Knepley DMLabel depthLabel; 27849b6f715bSMatthew G. Knepley IS facetIS; 27859b6f715bSMatthew G. Knepley PetscInt dim, Nf, f, v; 27869b6f715bSMatthew G. Knepley 27879b6f715bSMatthew G. Knepley PetscFunctionBegin; 27889b6f715bSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 27899b6f715bSMatthew G. Knepley PetscValidHeaderSpecific(X, VEC_CLASSID, 2); 2790292bffcbSToby Isaac PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 3); 27914f572ea9SToby Isaac if (vals) PetscAssertPointer(vals, 5); 27924f572ea9SToby Isaac PetscAssertPointer(integral, 7); 27939566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DMPLEX_IntegralFEM, dm, 0, 0, 0)); 27949566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthLabel(dm, &depthLabel)); 27959566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 27969566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(depthLabel, dim - 1, &facetIS)); 27979566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, §ion)); 27989566063dSJacob Faibussowitsch PetscCall(PetscSectionGetNumFields(section, &Nf)); 27999b6f715bSMatthew G. Knepley /* Get local solution with boundary values */ 28009566063dSJacob Faibussowitsch PetscCall(DMGetLocalVector(dm, &locX)); 28019566063dSJacob Faibussowitsch PetscCall(DMPlexInsertBoundaryValues(dm, PETSC_TRUE, locX, 0.0, NULL, NULL, NULL)); 28029566063dSJacob Faibussowitsch PetscCall(DMGlobalToLocalBegin(dm, X, INSERT_VALUES, locX)); 28039566063dSJacob Faibussowitsch PetscCall(DMGlobalToLocalEnd(dm, X, INSERT_VALUES, locX)); 28049b6f715bSMatthew G. Knepley /* Loop over label values */ 28059566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(integral, Nf)); 28069b6f715bSMatthew G. Knepley for (v = 0; v < numVals; ++v) { 28079b6f715bSMatthew G. Knepley IS pointIS; 28089b6f715bSMatthew G. Knepley PetscInt numFaces, face; 28099b6f715bSMatthew G. Knepley PetscScalar *fintegral; 28109b6f715bSMatthew G. Knepley 28119566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(label, vals[v], &pointIS)); 28129b6f715bSMatthew G. Knepley if (!pointIS) continue; /* No points with that id on this process */ 28139b6f715bSMatthew G. Knepley { 28149b6f715bSMatthew G. Knepley IS isectIS; 28159b6f715bSMatthew G. Knepley 28169b6f715bSMatthew G. Knepley /* TODO: Special cases of ISIntersect where it is quick to check a priori if one is a superset of the other */ 28179566063dSJacob Faibussowitsch PetscCall(ISIntersect_Caching_Internal(facetIS, pointIS, &isectIS)); 28189566063dSJacob Faibussowitsch PetscCall(ISDestroy(&pointIS)); 28199b6f715bSMatthew G. Knepley pointIS = isectIS; 28209b6f715bSMatthew G. Knepley } 28219566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(pointIS, &numFaces)); 28229566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(numFaces * Nf, &fintegral)); 282379ab67a3SMatthew G. Knepley PetscCall(DMPlexComputeBdIntegral_Internal(dm, locX, pointIS, funcs, fintegral, user)); 28249b6f715bSMatthew G. Knepley /* Sum point contributions into integral */ 28259371c9d4SSatish Balay for (f = 0; f < Nf; ++f) 28269371c9d4SSatish Balay for (face = 0; face < numFaces; ++face) integral[f] += fintegral[face * Nf + f]; 28279566063dSJacob Faibussowitsch PetscCall(PetscFree(fintegral)); 28289566063dSJacob Faibussowitsch PetscCall(ISDestroy(&pointIS)); 28299b6f715bSMatthew G. Knepley } 28309566063dSJacob Faibussowitsch PetscCall(DMRestoreLocalVector(dm, &locX)); 28319566063dSJacob Faibussowitsch PetscCall(ISDestroy(&facetIS)); 28329566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DMPLEX_IntegralFEM, dm, 0, 0, 0)); 28333ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 283464c72086SMatthew G. Knepley } 283564c72086SMatthew G. Knepley 2836d69c5d34SMatthew G. Knepley /*@ 28370318f8a0SStefano Zampini DMPlexComputeInterpolatorNested - Form the local portion of the interpolation matrix from the coarse `DM` to a uniformly refined `DM`. 2838d69c5d34SMatthew G. Knepley 2839d69c5d34SMatthew G. Knepley Input Parameters: 2840cf51de39SMatthew G. Knepley + dmc - The coarse mesh 2841cf51de39SMatthew G. Knepley . dmf - The fine mesh 2842cf51de39SMatthew G. Knepley . isRefined - Flag indicating regular refinement, rather than the same topology 2843d69c5d34SMatthew G. Knepley - user - The user context 2844d69c5d34SMatthew G. Knepley 2845d69c5d34SMatthew G. Knepley Output Parameter: 2846934789fcSMatthew G. Knepley . In - The interpolation matrix 2847d69c5d34SMatthew G. Knepley 2848d69c5d34SMatthew G. Knepley Level: developer 2849d69c5d34SMatthew G. Knepley 2850ae3cf2c1SStefano Zampini .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexComputeInterpolatorGeneral()` 2851d69c5d34SMatthew G. Knepley @*/ 2852d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeInterpolatorNested(DM dmc, DM dmf, PetscBool isRefined, Mat In, void *user) 2853d71ae5a4SJacob Faibussowitsch { 2854d69c5d34SMatthew G. Knepley DM_Plex *mesh = (DM_Plex *)dmc->data; 2855d69c5d34SMatthew G. Knepley const char *name = "Interpolator"; 2856d69c5d34SMatthew G. Knepley PetscFE *feRef; 285797c42addSMatthew G. Knepley PetscFV *fvRef; 2858d69c5d34SMatthew G. Knepley PetscSection fsection, fglobalSection; 2859d69c5d34SMatthew G. Knepley PetscSection csection, cglobalSection; 2860d69c5d34SMatthew G. Knepley PetscScalar *elemMat; 2861485ad865SMatthew G. Knepley PetscInt dim, Nf, f, fieldI, fieldJ, offsetI, offsetJ, cStart, cEnd, c; 28622ea9c922SToby Isaac PetscInt cTotDim = 0, rTotDim = 0; 2863d69c5d34SMatthew G. Knepley 2864d69c5d34SMatthew G. Knepley PetscFunctionBegin; 28659566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DMPLEX_InterpolatorFEM, dmc, dmf, 0, 0)); 28669566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dmf, &dim)); 28679566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dmf, &fsection)); 28689566063dSJacob Faibussowitsch PetscCall(DMGetGlobalSection(dmf, &fglobalSection)); 28699566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dmc, &csection)); 28709566063dSJacob Faibussowitsch PetscCall(DMGetGlobalSection(dmc, &cglobalSection)); 28719566063dSJacob Faibussowitsch PetscCall(PetscSectionGetNumFields(fsection, &Nf)); 28729566063dSJacob Faibussowitsch PetscCall(DMPlexGetSimplexOrBoxCells(dmc, 0, &cStart, &cEnd)); 28739566063dSJacob Faibussowitsch PetscCall(PetscCalloc2(Nf, &feRef, Nf, &fvRef)); 2874d69c5d34SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 28752ea9c922SToby Isaac PetscObject obj, objc; 28762ea9c922SToby Isaac PetscClassId id, idc; 28772ea9c922SToby Isaac PetscInt rNb = 0, Nc = 0, cNb = 0; 2878d69c5d34SMatthew G. Knepley 28799566063dSJacob Faibussowitsch PetscCall(DMGetField(dmf, f, NULL, &obj)); 28809566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 288197c42addSMatthew G. Knepley if (id == PETSCFE_CLASSID) { 288297c42addSMatthew G. Knepley PetscFE fe = (PetscFE)obj; 288397c42addSMatthew G. Knepley 2884cf51de39SMatthew G. Knepley if (isRefined) { 28859566063dSJacob Faibussowitsch PetscCall(PetscFERefine(fe, &feRef[f])); 2886cf51de39SMatthew G. Knepley } else { 28879566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)fe)); 2888cf51de39SMatthew G. Knepley feRef[f] = fe; 2889cf51de39SMatthew G. Knepley } 28909566063dSJacob Faibussowitsch PetscCall(PetscFEGetDimension(feRef[f], &rNb)); 28919566063dSJacob Faibussowitsch PetscCall(PetscFEGetNumComponents(fe, &Nc)); 289297c42addSMatthew G. Knepley } else if (id == PETSCFV_CLASSID) { 289397c42addSMatthew G. Knepley PetscFV fv = (PetscFV)obj; 289497c42addSMatthew G. Knepley PetscDualSpace Q; 289597c42addSMatthew G. Knepley 2896cf51de39SMatthew G. Knepley if (isRefined) { 28979566063dSJacob Faibussowitsch PetscCall(PetscFVRefine(fv, &fvRef[f])); 2898cf51de39SMatthew G. Knepley } else { 28999566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)fv)); 2900cf51de39SMatthew G. Knepley fvRef[f] = fv; 2901cf51de39SMatthew G. Knepley } 29029566063dSJacob Faibussowitsch PetscCall(PetscFVGetDualSpace(fvRef[f], &Q)); 29039566063dSJacob Faibussowitsch PetscCall(PetscDualSpaceGetDimension(Q, &rNb)); 29049566063dSJacob Faibussowitsch PetscCall(PetscFVGetDualSpace(fv, &Q)); 29059566063dSJacob Faibussowitsch PetscCall(PetscFVGetNumComponents(fv, &Nc)); 290697c42addSMatthew G. Knepley } 29079566063dSJacob Faibussowitsch PetscCall(DMGetField(dmc, f, NULL, &objc)); 29089566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(objc, &idc)); 29092ea9c922SToby Isaac if (idc == PETSCFE_CLASSID) { 29102ea9c922SToby Isaac PetscFE fe = (PetscFE)objc; 29112ea9c922SToby Isaac 29129566063dSJacob Faibussowitsch PetscCall(PetscFEGetDimension(fe, &cNb)); 29132ea9c922SToby Isaac } else if (id == PETSCFV_CLASSID) { 29142ea9c922SToby Isaac PetscFV fv = (PetscFV)obj; 29152ea9c922SToby Isaac PetscDualSpace Q; 29162ea9c922SToby Isaac 29179566063dSJacob Faibussowitsch PetscCall(PetscFVGetDualSpace(fv, &Q)); 29189566063dSJacob Faibussowitsch PetscCall(PetscDualSpaceGetDimension(Q, &cNb)); 2919d69c5d34SMatthew G. Knepley } 29202ea9c922SToby Isaac rTotDim += rNb; 29212ea9c922SToby Isaac cTotDim += cNb; 29222ea9c922SToby Isaac } 29239566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(rTotDim * cTotDim, &elemMat)); 29249566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(elemMat, rTotDim * cTotDim)); 2925d69c5d34SMatthew G. Knepley for (fieldI = 0, offsetI = 0; fieldI < Nf; ++fieldI) { 2926d69c5d34SMatthew G. Knepley PetscDualSpace Qref; 2927d69c5d34SMatthew G. Knepley PetscQuadrature f; 2928d69c5d34SMatthew G. Knepley const PetscReal *qpoints, *qweights; 2929d69c5d34SMatthew G. Knepley PetscReal *points; 2930d69c5d34SMatthew G. Knepley PetscInt npoints = 0, Nc, Np, fpdim, i, k, p, d; 2931d69c5d34SMatthew G. Knepley 2932d69c5d34SMatthew G. Knepley /* Compose points from all dual basis functionals */ 293397c42addSMatthew G. Knepley if (feRef[fieldI]) { 29349566063dSJacob Faibussowitsch PetscCall(PetscFEGetDualSpace(feRef[fieldI], &Qref)); 29359566063dSJacob Faibussowitsch PetscCall(PetscFEGetNumComponents(feRef[fieldI], &Nc)); 293697c42addSMatthew G. Knepley } else { 29379566063dSJacob Faibussowitsch PetscCall(PetscFVGetDualSpace(fvRef[fieldI], &Qref)); 29389566063dSJacob Faibussowitsch PetscCall(PetscFVGetNumComponents(fvRef[fieldI], &Nc)); 293997c42addSMatthew G. Knepley } 29409566063dSJacob Faibussowitsch PetscCall(PetscDualSpaceGetDimension(Qref, &fpdim)); 2941d69c5d34SMatthew G. Knepley for (i = 0; i < fpdim; ++i) { 29429566063dSJacob Faibussowitsch PetscCall(PetscDualSpaceGetFunctional(Qref, i, &f)); 29439566063dSJacob Faibussowitsch PetscCall(PetscQuadratureGetData(f, NULL, NULL, &Np, NULL, NULL)); 2944d69c5d34SMatthew G. Knepley npoints += Np; 2945d69c5d34SMatthew G. Knepley } 29469566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(npoints * dim, &points)); 2947d69c5d34SMatthew G. Knepley for (i = 0, k = 0; i < fpdim; ++i) { 29489566063dSJacob Faibussowitsch PetscCall(PetscDualSpaceGetFunctional(Qref, i, &f)); 29499566063dSJacob Faibussowitsch PetscCall(PetscQuadratureGetData(f, NULL, NULL, &Np, &qpoints, NULL)); 29509371c9d4SSatish Balay for (p = 0; p < Np; ++p, ++k) 29519371c9d4SSatish Balay for (d = 0; d < dim; ++d) points[k * dim + d] = qpoints[p * dim + d]; 2952d69c5d34SMatthew G. Knepley } 2953d69c5d34SMatthew G. Knepley 2954d69c5d34SMatthew G. Knepley for (fieldJ = 0, offsetJ = 0; fieldJ < Nf; ++fieldJ) { 295597c42addSMatthew G. Knepley PetscObject obj; 295697c42addSMatthew G. Knepley PetscClassId id; 29579c3cf19fSMatthew G. Knepley PetscInt NcJ = 0, cpdim = 0, j, qNc; 2958d69c5d34SMatthew G. Knepley 29599566063dSJacob Faibussowitsch PetscCall(DMGetField(dmc, fieldJ, NULL, &obj)); 29609566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 296197c42addSMatthew G. Knepley if (id == PETSCFE_CLASSID) { 296297c42addSMatthew G. Knepley PetscFE fe = (PetscFE)obj; 2963ef0bb6c7SMatthew G. Knepley PetscTabulation T = NULL; 2964d69c5d34SMatthew G. Knepley 2965d69c5d34SMatthew G. Knepley /* Evaluate basis at points */ 29669566063dSJacob Faibussowitsch PetscCall(PetscFEGetNumComponents(fe, &NcJ)); 29679566063dSJacob Faibussowitsch PetscCall(PetscFEGetDimension(fe, &cpdim)); 2968ffe73a53SMatthew G. Knepley /* For now, fields only interpolate themselves */ 2969ffe73a53SMatthew G. Knepley if (fieldI == fieldJ) { 297063a3b9bcSJacob Faibussowitsch PetscCheck(Nc == NcJ, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of components in fine space field %" PetscInt_FMT " does not match coarse field %" PetscInt_FMT, Nc, NcJ); 29719566063dSJacob Faibussowitsch PetscCall(PetscFECreateTabulation(fe, 1, npoints, points, 0, &T)); 2972d69c5d34SMatthew G. Knepley for (i = 0, k = 0; i < fpdim; ++i) { 29739566063dSJacob Faibussowitsch PetscCall(PetscDualSpaceGetFunctional(Qref, i, &f)); 29749566063dSJacob Faibussowitsch PetscCall(PetscQuadratureGetData(f, NULL, &qNc, &Np, NULL, &qweights)); 297563a3b9bcSJacob Faibussowitsch PetscCheck(qNc == NcJ, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of components in quadrature %" PetscInt_FMT " does not match coarse field %" PetscInt_FMT, qNc, NcJ); 2976d69c5d34SMatthew G. Knepley for (p = 0; p < Np; ++p, ++k) { 297736a6d9c0SMatthew G. Knepley for (j = 0; j < cpdim; ++j) { 2978d172c84bSMatthew G. Knepley /* 2979d172c84bSMatthew G. Knepley cTotDim: Total columns in element interpolation matrix, sum of number of dual basis functionals in each field 2980d172c84bSMatthew G. Knepley offsetI, offsetJ: Offsets into the larger element interpolation matrix for different fields 2981d172c84bSMatthew G. Knepley fpdim, i, cpdim, j: Dofs for fine and coarse grids, correspond to dual space basis functionals 2982d172c84bSMatthew G. Knepley qNC, Nc, Ncj, c: Number of components in this field 2983d172c84bSMatthew G. Knepley Np, p: Number of quad points in the fine grid functional i 2984d172c84bSMatthew G. Knepley k: i*Np + p, overall point number for the interpolation 2985d172c84bSMatthew G. Knepley */ 2986ef0bb6c7SMatthew G. Knepley for (c = 0; c < Nc; ++c) elemMat[(offsetI + i) * cTotDim + offsetJ + j] += T->T[0][k * cpdim * NcJ + j * Nc + c] * qweights[p * qNc + c]; 298736a6d9c0SMatthew G. Knepley } 2988d69c5d34SMatthew G. Knepley } 2989d69c5d34SMatthew G. Knepley } 29909566063dSJacob Faibussowitsch PetscCall(PetscTabulationDestroy(&T)); 2991ffe73a53SMatthew G. Knepley } 299297c42addSMatthew G. Knepley } else if (id == PETSCFV_CLASSID) { 299397c42addSMatthew G. Knepley PetscFV fv = (PetscFV)obj; 299497c42addSMatthew G. Knepley 299597c42addSMatthew G. Knepley /* Evaluate constant function at points */ 29969566063dSJacob Faibussowitsch PetscCall(PetscFVGetNumComponents(fv, &NcJ)); 299797c42addSMatthew G. Knepley cpdim = 1; 299897c42addSMatthew G. Knepley /* For now, fields only interpolate themselves */ 299997c42addSMatthew G. Knepley if (fieldI == fieldJ) { 300063a3b9bcSJacob Faibussowitsch PetscCheck(Nc == NcJ, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of components in fine space field %" PetscInt_FMT " does not match coarse field %" PetscInt_FMT, Nc, NcJ); 300197c42addSMatthew G. Knepley for (i = 0, k = 0; i < fpdim; ++i) { 30029566063dSJacob Faibussowitsch PetscCall(PetscDualSpaceGetFunctional(Qref, i, &f)); 30039566063dSJacob Faibussowitsch PetscCall(PetscQuadratureGetData(f, NULL, &qNc, &Np, NULL, &qweights)); 300463a3b9bcSJacob Faibussowitsch PetscCheck(qNc == NcJ, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of components in quadrature %" PetscInt_FMT " does not match coarse field %" PetscInt_FMT, qNc, NcJ); 300597c42addSMatthew G. Knepley for (p = 0; p < Np; ++p, ++k) { 300697c42addSMatthew G. Knepley for (j = 0; j < cpdim; ++j) { 3007458eb97cSMatthew G. Knepley for (c = 0; c < Nc; ++c) elemMat[(offsetI + i) * cTotDim + offsetJ + j] += 1.0 * qweights[p * qNc + c]; 300897c42addSMatthew G. Knepley } 300997c42addSMatthew G. Knepley } 301097c42addSMatthew G. Knepley } 301197c42addSMatthew G. Knepley } 301297c42addSMatthew G. Knepley } 3013d172c84bSMatthew G. Knepley offsetJ += cpdim; 3014d69c5d34SMatthew G. Knepley } 3015d172c84bSMatthew G. Knepley offsetI += fpdim; 30169566063dSJacob Faibussowitsch PetscCall(PetscFree(points)); 3017d69c5d34SMatthew G. Knepley } 30189566063dSJacob Faibussowitsch if (mesh->printFEM > 1) PetscCall(DMPrintCellMatrix(0, name, rTotDim, cTotDim, elemMat)); 30197f5b169aSMatthew G. Knepley /* Preallocate matrix */ 30207f5b169aSMatthew G. Knepley { 3021c094ef40SMatthew G. Knepley Mat preallocator; 3022c094ef40SMatthew G. Knepley PetscScalar *vals; 3023c094ef40SMatthew G. Knepley PetscInt *cellCIndices, *cellFIndices; 3024c094ef40SMatthew G. Knepley PetscInt locRows, locCols, cell; 30257f5b169aSMatthew G. Knepley 30269566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(In, &locRows, &locCols)); 30279566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)In), &preallocator)); 30289566063dSJacob Faibussowitsch PetscCall(MatSetType(preallocator, MATPREALLOCATOR)); 30299566063dSJacob Faibussowitsch PetscCall(MatSetSizes(preallocator, locRows, locCols, PETSC_DETERMINE, PETSC_DETERMINE)); 30309566063dSJacob Faibussowitsch PetscCall(MatSetUp(preallocator)); 30319566063dSJacob Faibussowitsch PetscCall(PetscCalloc3(rTotDim * cTotDim, &vals, cTotDim, &cellCIndices, rTotDim, &cellFIndices)); 30327f5b169aSMatthew G. Knepley for (cell = cStart; cell < cEnd; ++cell) { 3033cf51de39SMatthew G. Knepley if (isRefined) { 30349566063dSJacob Faibussowitsch PetscCall(DMPlexMatGetClosureIndicesRefined(dmf, fsection, fglobalSection, dmc, csection, cglobalSection, cell, cellCIndices, cellFIndices)); 30359566063dSJacob Faibussowitsch PetscCall(MatSetValues(preallocator, rTotDim, cellFIndices, cTotDim, cellCIndices, vals, INSERT_VALUES)); 3036cf51de39SMatthew G. Knepley } else { 3037e8e188d2SZach Atkins PetscCall(DMPlexMatSetClosureGeneral(dmf, fsection, fglobalSection, PETSC_FALSE, dmc, csection, cglobalSection, PETSC_FALSE, preallocator, cell, vals, INSERT_VALUES)); 3038cf51de39SMatthew G. Knepley } 30397f5b169aSMatthew G. Knepley } 30409566063dSJacob Faibussowitsch PetscCall(PetscFree3(vals, cellCIndices, cellFIndices)); 30419566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(preallocator, MAT_FINAL_ASSEMBLY)); 30429566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(preallocator, MAT_FINAL_ASSEMBLY)); 30439566063dSJacob Faibussowitsch PetscCall(MatPreallocatorPreallocate(preallocator, PETSC_TRUE, In)); 30449566063dSJacob Faibussowitsch PetscCall(MatDestroy(&preallocator)); 30457f5b169aSMatthew G. Knepley } 30467f5b169aSMatthew G. Knepley /* Fill matrix */ 30479566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(In)); 3048d69c5d34SMatthew G. Knepley for (c = cStart; c < cEnd; ++c) { 3049cf51de39SMatthew G. Knepley if (isRefined) { 30509566063dSJacob Faibussowitsch PetscCall(DMPlexMatSetClosureRefined(dmf, fsection, fglobalSection, dmc, csection, cglobalSection, In, c, elemMat, INSERT_VALUES)); 3051cf51de39SMatthew G. Knepley } else { 3052e8e188d2SZach Atkins PetscCall(DMPlexMatSetClosureGeneral(dmf, fsection, fglobalSection, PETSC_FALSE, dmc, csection, cglobalSection, PETSC_FALSE, In, c, elemMat, INSERT_VALUES)); 3053cf51de39SMatthew G. Knepley } 3054d69c5d34SMatthew G. Knepley } 30559566063dSJacob Faibussowitsch for (f = 0; f < Nf; ++f) PetscCall(PetscFEDestroy(&feRef[f])); 30569566063dSJacob Faibussowitsch PetscCall(PetscFree2(feRef, fvRef)); 30579566063dSJacob Faibussowitsch PetscCall(PetscFree(elemMat)); 30589566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(In, MAT_FINAL_ASSEMBLY)); 30599566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(In, MAT_FINAL_ASSEMBLY)); 30609318fe57SMatthew G. Knepley if (mesh->printFEM > 1) { 30619566063dSJacob Faibussowitsch PetscCall(PetscPrintf(PetscObjectComm((PetscObject)In), "%s:\n", name)); 30622ce66baaSPierre Jolivet PetscCall(MatFilter(In, 1.0e-10, PETSC_FALSE, PETSC_FALSE)); 30639566063dSJacob Faibussowitsch PetscCall(MatView(In, NULL)); 3064d69c5d34SMatthew G. Knepley } 30659566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DMPLEX_InterpolatorFEM, dmc, dmf, 0, 0)); 30663ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3067d69c5d34SMatthew G. Knepley } 30686c73c22cSMatthew G. Knepley 3069d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeMassMatrixNested(DM dmc, DM dmf, Mat mass, void *user) 3070d71ae5a4SJacob Faibussowitsch { 3071bd041c0cSMatthew G. Knepley SETERRQ(PetscObjectComm((PetscObject)dmc), PETSC_ERR_SUP, "Laziness"); 3072bd041c0cSMatthew G. Knepley } 3073bd041c0cSMatthew G. Knepley 307468132eb9SMatthew G. Knepley /*@ 30750318f8a0SStefano Zampini DMPlexComputeInterpolatorGeneral - Form the local portion of the interpolation matrix from the coarse `DM` to a non-nested fine `DM`. 307668132eb9SMatthew G. Knepley 307768132eb9SMatthew G. Knepley Input Parameters: 307868132eb9SMatthew G. Knepley + dmf - The fine mesh 307968132eb9SMatthew G. Knepley . dmc - The coarse mesh 308068132eb9SMatthew G. Knepley - user - The user context 308168132eb9SMatthew G. Knepley 308268132eb9SMatthew G. Knepley Output Parameter: 308368132eb9SMatthew G. Knepley . In - The interpolation matrix 308468132eb9SMatthew G. Knepley 308568132eb9SMatthew G. Knepley Level: developer 308668132eb9SMatthew G. Knepley 3087ae3cf2c1SStefano Zampini .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexComputeInterpolatorNested()` 308868132eb9SMatthew G. Knepley @*/ 3089d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeInterpolatorGeneral(DM dmc, DM dmf, Mat In, void *user) 3090d71ae5a4SJacob Faibussowitsch { 309164e98e1dSMatthew G. Knepley DM_Plex *mesh = (DM_Plex *)dmf->data; 309264e98e1dSMatthew G. Knepley const char *name = "Interpolator"; 30934ef9d792SMatthew G. Knepley PetscDS prob; 3094a0806964SMatthew G. Knepley Mat interp; 3095a0806964SMatthew G. Knepley PetscSection fsection, globalFSection; 3096a0806964SMatthew G. Knepley PetscSection csection, globalCSection; 3097a0806964SMatthew G. Knepley PetscInt locRows, locCols; 30984ef9d792SMatthew G. Knepley PetscReal *x, *v0, *J, *invJ, detJ; 30994ef9d792SMatthew G. Knepley PetscReal *v0c, *Jc, *invJc, detJc; 31004ef9d792SMatthew G. Knepley PetscScalar *elemMat; 3101a0806964SMatthew G. Knepley PetscInt dim, Nf, field, totDim, cStart, cEnd, cell, ccell, s; 31024ef9d792SMatthew G. Knepley 31034ef9d792SMatthew G. Knepley PetscFunctionBegin; 31049566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DMPLEX_InterpolatorFEM, dmc, dmf, 0, 0)); 31059566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDim(dmc, &dim)); 31069566063dSJacob Faibussowitsch PetscCall(DMGetDS(dmc, &prob)); 31079566063dSJacob Faibussowitsch PetscCall(PetscDSGetWorkspace(prob, &x, NULL, NULL, NULL, NULL)); 31089566063dSJacob Faibussowitsch PetscCall(PetscDSGetNumFields(prob, &Nf)); 31099566063dSJacob Faibussowitsch PetscCall(PetscMalloc3(dim, &v0, dim * dim, &J, dim * dim, &invJ)); 31109566063dSJacob Faibussowitsch PetscCall(PetscMalloc3(dim, &v0c, dim * dim, &Jc, dim * dim, &invJc)); 31119566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dmf, &fsection)); 31129566063dSJacob Faibussowitsch PetscCall(DMGetGlobalSection(dmf, &globalFSection)); 31139566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dmc, &csection)); 31149566063dSJacob Faibussowitsch PetscCall(DMGetGlobalSection(dmc, &globalCSection)); 3115a0806964SMatthew G. Knepley PetscCall(DMPlexGetSimplexOrBoxCells(dmf, 0, &cStart, &cEnd)); 31169566063dSJacob Faibussowitsch PetscCall(PetscDSGetTotalDimension(prob, &totDim)); 31179566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(totDim, &elemMat)); 31184ef9d792SMatthew G. Knepley 3119a0806964SMatthew G. Knepley PetscCall(MatGetLocalSize(In, &locRows, &locCols)); 3120a0806964SMatthew G. Knepley PetscCall(MatCreate(PetscObjectComm((PetscObject)In), &interp)); 3121a0806964SMatthew G. Knepley PetscCall(MatSetType(interp, MATPREALLOCATOR)); 3122a0806964SMatthew G. Knepley PetscCall(MatSetSizes(interp, locRows, locCols, PETSC_DETERMINE, PETSC_DETERMINE)); 3123a0806964SMatthew G. Knepley PetscCall(MatSetUp(interp)); 3124a0806964SMatthew G. Knepley for (s = 0; s < 2; ++s) { 31254ef9d792SMatthew G. Knepley for (field = 0; field < Nf; ++field) { 31264ef9d792SMatthew G. Knepley PetscObject obj; 31274ef9d792SMatthew G. Knepley PetscClassId id; 3128c0d7054bSMatthew G. Knepley PetscDualSpace Q = NULL; 3129ef0bb6c7SMatthew G. Knepley PetscTabulation T = NULL; 31304ef9d792SMatthew G. Knepley PetscQuadrature f; 31314ef9d792SMatthew G. Knepley const PetscReal *qpoints, *qweights; 3132d0f6233fSMatthew G. Knepley PetscInt Nc, qNc, Np, fpdim, off, i, d; 31334ef9d792SMatthew G. Knepley 3134d0f6233fSMatthew G. Knepley PetscCall(PetscDSGetFieldOffset(prob, field, &off)); 31359566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(prob, field, &obj)); 31369566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 31374ef9d792SMatthew G. Knepley if (id == PETSCFE_CLASSID) { 31384ef9d792SMatthew G. Knepley PetscFE fe = (PetscFE)obj; 31394ef9d792SMatthew G. Knepley 31409566063dSJacob Faibussowitsch PetscCall(PetscFEGetDualSpace(fe, &Q)); 31419566063dSJacob Faibussowitsch PetscCall(PetscFEGetNumComponents(fe, &Nc)); 3142a0806964SMatthew G. Knepley if (s) PetscCall(PetscFECreateTabulation(fe, 1, 1, x, 0, &T)); 31434ef9d792SMatthew G. Knepley } else if (id == PETSCFV_CLASSID) { 31444ef9d792SMatthew G. Knepley PetscFV fv = (PetscFV)obj; 31454ef9d792SMatthew G. Knepley 31469566063dSJacob Faibussowitsch PetscCall(PetscFVGetDualSpace(fv, &Q)); 31474ef9d792SMatthew G. Knepley Nc = 1; 314863a3b9bcSJacob Faibussowitsch } else SETERRQ(PetscObjectComm((PetscObject)dmc), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, field); 31499566063dSJacob Faibussowitsch PetscCall(PetscDualSpaceGetDimension(Q, &fpdim)); 31504ef9d792SMatthew G. Knepley /* For each fine grid cell */ 31514ef9d792SMatthew G. Knepley for (cell = cStart; cell < cEnd; ++cell) { 31524ef9d792SMatthew G. Knepley PetscInt *findices, *cindices; 31534ef9d792SMatthew G. Knepley PetscInt numFIndices, numCIndices; 31544ef9d792SMatthew G. Knepley 31559566063dSJacob Faibussowitsch PetscCall(DMPlexGetClosureIndices(dmf, fsection, globalFSection, cell, PETSC_FALSE, &numFIndices, &findices, NULL, NULL)); 31569566063dSJacob Faibussowitsch PetscCall(DMPlexComputeCellGeometryFEM(dmf, cell, NULL, v0, J, invJ, &detJ)); 3157d0f6233fSMatthew G. Knepley PetscCheck(numFIndices == totDim, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of fine indices %" PetscInt_FMT " != %" PetscInt_FMT " dual basis vecs", numFIndices, totDim); 31584ef9d792SMatthew G. Knepley for (i = 0; i < fpdim; ++i) { 31594ef9d792SMatthew G. Knepley Vec pointVec; 31604ef9d792SMatthew G. Knepley PetscScalar *pV; 316112111d7cSToby Isaac PetscSF coarseCellSF = NULL; 31623a93e3b7SToby Isaac const PetscSFNode *coarseCells; 3163d0f6233fSMatthew G. Knepley PetscInt numCoarseCells, cpdim, row = findices[i + off], q, c, j; 31644ef9d792SMatthew G. Knepley 31654ef9d792SMatthew G. Knepley /* Get points from the dual basis functional quadrature */ 31669566063dSJacob Faibussowitsch PetscCall(PetscDualSpaceGetFunctional(Q, i, &f)); 31679566063dSJacob Faibussowitsch PetscCall(PetscQuadratureGetData(f, NULL, &qNc, &Np, &qpoints, &qweights)); 316863a3b9bcSJacob Faibussowitsch PetscCheck(qNc == Nc, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of components in quadrature %" PetscInt_FMT " does not match coarse field %" PetscInt_FMT, qNc, Nc); 31699566063dSJacob Faibussowitsch PetscCall(VecCreateSeq(PETSC_COMM_SELF, Np * dim, &pointVec)); 31709566063dSJacob Faibussowitsch PetscCall(VecSetBlockSize(pointVec, dim)); 31719566063dSJacob Faibussowitsch PetscCall(VecGetArray(pointVec, &pV)); 31724ef9d792SMatthew G. Knepley for (q = 0; q < Np; ++q) { 3173c330f8ffSToby Isaac const PetscReal xi0[3] = {-1., -1., -1.}; 3174c330f8ffSToby Isaac 31754ef9d792SMatthew G. Knepley /* Transform point to real space */ 3176c330f8ffSToby Isaac CoordinatesRefToReal(dim, dim, xi0, v0, J, &qpoints[q * dim], x); 31774ef9d792SMatthew G. Knepley for (d = 0; d < dim; ++d) pV[q * dim + d] = x[d]; 31784ef9d792SMatthew G. Knepley } 31799566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(pointVec, &pV)); 31804ef9d792SMatthew G. Knepley /* Get set of coarse cells that overlap points (would like to group points by coarse cell) */ 31811555c271SMatthew G. Knepley /* OPT: Read this out from preallocation information */ 31829566063dSJacob Faibussowitsch PetscCall(DMLocatePoints(dmc, pointVec, DM_POINTLOCATION_NEAREST, &coarseCellSF)); 31834ef9d792SMatthew G. Knepley /* Update preallocation info */ 31849566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(coarseCellSF, NULL, &numCoarseCells, NULL, &coarseCells)); 31855f80ce2aSJacob Faibussowitsch PetscCheck(numCoarseCells == Np, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Not all closure points located"); 31869566063dSJacob Faibussowitsch PetscCall(VecGetArray(pointVec, &pV)); 31874ef9d792SMatthew G. Knepley for (ccell = 0; ccell < numCoarseCells; ++ccell) { 3188826eb36dSMatthew G. Knepley PetscReal pVReal[3]; 3189c330f8ffSToby Isaac const PetscReal xi0[3] = {-1., -1., -1.}; 3190826eb36dSMatthew G. Knepley 31919566063dSJacob Faibussowitsch PetscCall(DMPlexGetClosureIndices(dmc, csection, globalCSection, coarseCells[ccell].index, PETSC_FALSE, &numCIndices, &cindices, NULL, NULL)); 3192a0806964SMatthew G. Knepley if (id == PETSCFE_CLASSID) PetscCall(PetscFEGetDimension((PetscFE)obj, &cpdim)); 3193a0806964SMatthew G. Knepley else cpdim = 1; 3194a0806964SMatthew G. Knepley 3195a0806964SMatthew G. Knepley if (s) { 31964ef9d792SMatthew G. Knepley /* Transform points from real space to coarse reference space */ 31979566063dSJacob Faibussowitsch PetscCall(DMPlexComputeCellGeometryFEM(dmc, coarseCells[ccell].index, NULL, v0c, Jc, invJc, &detJc)); 3198e2d86523SMatthew G. Knepley for (d = 0; d < dim; ++d) pVReal[d] = PetscRealPart(pV[ccell * dim + d]); 3199c330f8ffSToby Isaac CoordinatesRealToRef(dim, dim, xi0, v0c, invJc, pVReal, x); 32004ef9d792SMatthew G. Knepley 32014ef9d792SMatthew G. Knepley if (id == PETSCFE_CLASSID) { 32024ef9d792SMatthew G. Knepley /* Evaluate coarse basis on contained point */ 3203a0806964SMatthew G. Knepley PetscCall(PetscFEComputeTabulation((PetscFE)obj, 1, x, 0, T)); 32049566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(elemMat, cpdim)); 32054ef9d792SMatthew G. Knepley /* Get elemMat entries by multiplying by weight */ 32064ef9d792SMatthew G. Knepley for (j = 0; j < cpdim; ++j) { 3207ef0bb6c7SMatthew G. Knepley for (c = 0; c < Nc; ++c) elemMat[j] += T->T[0][j * Nc + c] * qweights[ccell * qNc + c]; 32084ef9d792SMatthew G. Knepley } 32094ef9d792SMatthew G. Knepley } else { 32104ef9d792SMatthew G. Knepley for (j = 0; j < cpdim; ++j) { 32119c3cf19fSMatthew G. Knepley for (c = 0; c < Nc; ++c) elemMat[j] += 1.0 * qweights[ccell * qNc + c]; 32124ef9d792SMatthew G. Knepley } 32134ef9d792SMatthew G. Knepley } 32149566063dSJacob Faibussowitsch if (mesh->printFEM > 1) PetscCall(DMPrintCellMatrix(cell, name, 1, numCIndices, elemMat)); 3215a0806964SMatthew G. Knepley } 3216a0806964SMatthew G. Knepley /* Update interpolator */ 3217d0f6233fSMatthew G. Knepley PetscCheck(numCIndices == totDim, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Number of element matrix columns %" PetscInt_FMT " != %" PetscInt_FMT, numCIndices, totDim); 3218a0806964SMatthew G. Knepley PetscCall(MatSetValues(interp, 1, &row, cpdim, &cindices[off], elemMat, INSERT_VALUES)); 32199566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreClosureIndices(dmc, csection, globalCSection, coarseCells[ccell].index, PETSC_FALSE, &numCIndices, &cindices, NULL, NULL)); 32204ef9d792SMatthew G. Knepley } 32219566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(pointVec, &pV)); 32229566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&coarseCellSF)); 32239566063dSJacob Faibussowitsch PetscCall(VecDestroy(&pointVec)); 32244ef9d792SMatthew G. Knepley } 32259566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreClosureIndices(dmf, fsection, globalFSection, cell, PETSC_FALSE, &numFIndices, &findices, NULL, NULL)); 32264ef9d792SMatthew G. Knepley } 3227a0806964SMatthew G. Knepley if (s && id == PETSCFE_CLASSID) PetscCall(PetscTabulationDestroy(&T)); 3228a0806964SMatthew G. Knepley } 3229a0806964SMatthew G. Knepley if (!s) { 3230a0806964SMatthew G. Knepley PetscCall(MatAssemblyBegin(interp, MAT_FINAL_ASSEMBLY)); 3231a0806964SMatthew G. Knepley PetscCall(MatAssemblyEnd(interp, MAT_FINAL_ASSEMBLY)); 3232a0806964SMatthew G. Knepley PetscCall(MatPreallocatorPreallocate(interp, PETSC_TRUE, In)); 3233a0806964SMatthew G. Knepley PetscCall(MatDestroy(&interp)); 3234a0806964SMatthew G. Knepley interp = In; 3235a0806964SMatthew G. Knepley } 32364ef9d792SMatthew G. Knepley } 32379566063dSJacob Faibussowitsch PetscCall(PetscFree3(v0, J, invJ)); 32389566063dSJacob Faibussowitsch PetscCall(PetscFree3(v0c, Jc, invJc)); 32399566063dSJacob Faibussowitsch PetscCall(PetscFree(elemMat)); 32409566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(In, MAT_FINAL_ASSEMBLY)); 32419566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(In, MAT_FINAL_ASSEMBLY)); 32429566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DMPLEX_InterpolatorFEM, dmc, dmf, 0, 0)); 32433ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 32444ef9d792SMatthew G. Knepley } 32454ef9d792SMatthew G. Knepley 324646fa42a0SMatthew G. Knepley /*@ 32470318f8a0SStefano Zampini DMPlexComputeMassMatrixGeneral - Form the local portion of the mass matrix from the coarse `DM` to a non-nested fine `DM`. 3248bd041c0cSMatthew G. Knepley 3249bd041c0cSMatthew G. Knepley Input Parameters: 3250bd041c0cSMatthew G. Knepley + dmf - The fine mesh 3251bd041c0cSMatthew G. Knepley . dmc - The coarse mesh 3252bd041c0cSMatthew G. Knepley - user - The user context 3253bd041c0cSMatthew G. Knepley 3254bd041c0cSMatthew G. Knepley Output Parameter: 3255bd041c0cSMatthew G. Knepley . mass - The mass matrix 3256bd041c0cSMatthew G. Knepley 3257bd041c0cSMatthew G. Knepley Level: developer 3258bd041c0cSMatthew G. Knepley 3259ae3cf2c1SStefano Zampini .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexComputeMassMatrixNested()`, `DMPlexComputeInterpolatorNested()`, `DMPlexComputeInterpolatorGeneral()` 3260bd041c0cSMatthew G. Knepley @*/ 3261d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeMassMatrixGeneral(DM dmc, DM dmf, Mat mass, void *user) 3262d71ae5a4SJacob Faibussowitsch { 3263bd041c0cSMatthew G. Knepley DM_Plex *mesh = (DM_Plex *)dmf->data; 3264bd041c0cSMatthew G. Knepley const char *name = "Mass Matrix"; 3265bd041c0cSMatthew G. Knepley PetscDS prob; 3266bd041c0cSMatthew G. Knepley PetscSection fsection, csection, globalFSection, globalCSection; 3267e8f14785SLisandro Dalcin PetscHSetIJ ht; 3268bd041c0cSMatthew G. Knepley PetscLayout rLayout; 3269bd041c0cSMatthew G. Knepley PetscInt *dnz, *onz; 3270bd041c0cSMatthew G. Knepley PetscInt locRows, rStart, rEnd; 3271bd041c0cSMatthew G. Knepley PetscReal *x, *v0, *J, *invJ, detJ; 3272bd041c0cSMatthew G. Knepley PetscReal *v0c, *Jc, *invJc, detJc; 3273bd041c0cSMatthew G. Knepley PetscScalar *elemMat; 3274bd041c0cSMatthew G. Knepley PetscInt dim, Nf, field, totDim, cStart, cEnd, cell, ccell; 3275bd041c0cSMatthew G. Knepley 3276bd041c0cSMatthew G. Knepley PetscFunctionBegin; 32779566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDim(dmc, &dim)); 32789566063dSJacob Faibussowitsch PetscCall(DMGetDS(dmc, &prob)); 32799566063dSJacob Faibussowitsch PetscCall(PetscDSGetWorkspace(prob, &x, NULL, NULL, NULL, NULL)); 32809566063dSJacob Faibussowitsch PetscCall(PetscDSGetNumFields(prob, &Nf)); 32819566063dSJacob Faibussowitsch PetscCall(PetscMalloc3(dim, &v0, dim * dim, &J, dim * dim, &invJ)); 32829566063dSJacob Faibussowitsch PetscCall(PetscMalloc3(dim, &v0c, dim * dim, &Jc, dim * dim, &invJc)); 32839566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dmf, &fsection)); 32849566063dSJacob Faibussowitsch PetscCall(DMGetGlobalSection(dmf, &globalFSection)); 32859566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dmc, &csection)); 32869566063dSJacob Faibussowitsch PetscCall(DMGetGlobalSection(dmc, &globalCSection)); 32879566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(dmf, 0, &cStart, &cEnd)); 32889566063dSJacob Faibussowitsch PetscCall(PetscDSGetTotalDimension(prob, &totDim)); 32899566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(totDim, &elemMat)); 3290bd041c0cSMatthew G. Knepley 32919566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(mass, &locRows, NULL)); 32929566063dSJacob Faibussowitsch PetscCall(PetscLayoutCreate(PetscObjectComm((PetscObject)mass), &rLayout)); 32939566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetLocalSize(rLayout, locRows)); 32949566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetBlockSize(rLayout, 1)); 32959566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(rLayout)); 32969566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetRange(rLayout, &rStart, &rEnd)); 32979566063dSJacob Faibussowitsch PetscCall(PetscLayoutDestroy(&rLayout)); 32989566063dSJacob Faibussowitsch PetscCall(PetscCalloc2(locRows, &dnz, locRows, &onz)); 32999566063dSJacob Faibussowitsch PetscCall(PetscHSetIJCreate(&ht)); 3300bd041c0cSMatthew G. Knepley for (field = 0; field < Nf; ++field) { 3301bd041c0cSMatthew G. Knepley PetscObject obj; 3302bd041c0cSMatthew G. Knepley PetscClassId id; 3303bd041c0cSMatthew G. Knepley PetscQuadrature quad; 3304bd041c0cSMatthew G. Knepley const PetscReal *qpoints; 3305bd041c0cSMatthew G. Knepley PetscInt Nq, Nc, i, d; 3306bd041c0cSMatthew G. Knepley 33079566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(prob, field, &obj)); 33089566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 33099566063dSJacob Faibussowitsch if (id == PETSCFE_CLASSID) PetscCall(PetscFEGetQuadrature((PetscFE)obj, &quad)); 33109566063dSJacob Faibussowitsch else PetscCall(PetscFVGetQuadrature((PetscFV)obj, &quad)); 33119566063dSJacob Faibussowitsch PetscCall(PetscQuadratureGetData(quad, NULL, &Nc, &Nq, &qpoints, NULL)); 3312bd041c0cSMatthew G. Knepley /* For each fine grid cell */ 3313bd041c0cSMatthew G. Knepley for (cell = cStart; cell < cEnd; ++cell) { 3314bd041c0cSMatthew G. Knepley Vec pointVec; 3315bd041c0cSMatthew G. Knepley PetscScalar *pV; 3316bd041c0cSMatthew G. Knepley PetscSF coarseCellSF = NULL; 3317bd041c0cSMatthew G. Knepley const PetscSFNode *coarseCells; 3318bd041c0cSMatthew G. Knepley PetscInt numCoarseCells, q, c; 3319bd041c0cSMatthew G. Knepley PetscInt *findices, *cindices; 3320bd041c0cSMatthew G. Knepley PetscInt numFIndices, numCIndices; 3321bd041c0cSMatthew G. Knepley 33229566063dSJacob Faibussowitsch PetscCall(DMPlexGetClosureIndices(dmf, fsection, globalFSection, cell, PETSC_FALSE, &numFIndices, &findices, NULL, NULL)); 33239566063dSJacob Faibussowitsch PetscCall(DMPlexComputeCellGeometryFEM(dmf, cell, NULL, v0, J, invJ, &detJ)); 3324bd041c0cSMatthew G. Knepley /* Get points from the quadrature */ 33259566063dSJacob Faibussowitsch PetscCall(VecCreateSeq(PETSC_COMM_SELF, Nq * dim, &pointVec)); 33269566063dSJacob Faibussowitsch PetscCall(VecSetBlockSize(pointVec, dim)); 33279566063dSJacob Faibussowitsch PetscCall(VecGetArray(pointVec, &pV)); 3328bd041c0cSMatthew G. Knepley for (q = 0; q < Nq; ++q) { 3329c330f8ffSToby Isaac const PetscReal xi0[3] = {-1., -1., -1.}; 3330c330f8ffSToby Isaac 3331bd041c0cSMatthew G. Knepley /* Transform point to real space */ 3332c330f8ffSToby Isaac CoordinatesRefToReal(dim, dim, xi0, v0, J, &qpoints[q * dim], x); 3333bd041c0cSMatthew G. Knepley for (d = 0; d < dim; ++d) pV[q * dim + d] = x[d]; 3334bd041c0cSMatthew G. Knepley } 33359566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(pointVec, &pV)); 3336bd041c0cSMatthew G. Knepley /* Get set of coarse cells that overlap points (would like to group points by coarse cell) */ 33379566063dSJacob Faibussowitsch PetscCall(DMLocatePoints(dmc, pointVec, DM_POINTLOCATION_NEAREST, &coarseCellSF)); 33389566063dSJacob Faibussowitsch PetscCall(PetscSFViewFromOptions(coarseCellSF, NULL, "-interp_sf_view")); 3339bd041c0cSMatthew G. Knepley /* Update preallocation info */ 33409566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(coarseCellSF, NULL, &numCoarseCells, NULL, &coarseCells)); 33415f80ce2aSJacob Faibussowitsch PetscCheck(numCoarseCells == Nq, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Not all closure points located"); 3342bd041c0cSMatthew G. Knepley { 3343e8f14785SLisandro Dalcin PetscHashIJKey key; 3344e8f14785SLisandro Dalcin PetscBool missing; 3345bd041c0cSMatthew G. Knepley 3346bd041c0cSMatthew G. Knepley for (i = 0; i < numFIndices; ++i) { 3347e8f14785SLisandro Dalcin key.i = findices[i]; 3348e8f14785SLisandro Dalcin if (key.i >= 0) { 3349bd041c0cSMatthew G. Knepley /* Get indices for coarse elements */ 3350bd041c0cSMatthew G. Knepley for (ccell = 0; ccell < numCoarseCells; ++ccell) { 33519566063dSJacob Faibussowitsch PetscCall(DMPlexGetClosureIndices(dmc, csection, globalCSection, coarseCells[ccell].index, PETSC_FALSE, &numCIndices, &cindices, NULL, NULL)); 3352bd041c0cSMatthew G. Knepley for (c = 0; c < numCIndices; ++c) { 3353e8f14785SLisandro Dalcin key.j = cindices[c]; 3354e8f14785SLisandro Dalcin if (key.j < 0) continue; 33559566063dSJacob Faibussowitsch PetscCall(PetscHSetIJQueryAdd(ht, key, &missing)); 3356bd041c0cSMatthew G. Knepley if (missing) { 3357e8f14785SLisandro Dalcin if ((key.j >= rStart) && (key.j < rEnd)) ++dnz[key.i - rStart]; 3358e8f14785SLisandro Dalcin else ++onz[key.i - rStart]; 3359bd041c0cSMatthew G. Knepley } 3360bd041c0cSMatthew G. Knepley } 33619566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreClosureIndices(dmc, csection, globalCSection, coarseCells[ccell].index, PETSC_FALSE, &numCIndices, &cindices, NULL, NULL)); 3362bd041c0cSMatthew G. Knepley } 3363bd041c0cSMatthew G. Knepley } 3364bd041c0cSMatthew G. Knepley } 3365bd041c0cSMatthew G. Knepley } 33669566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&coarseCellSF)); 33679566063dSJacob Faibussowitsch PetscCall(VecDestroy(&pointVec)); 33689566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreClosureIndices(dmf, fsection, globalFSection, cell, PETSC_FALSE, &numFIndices, &findices, NULL, NULL)); 3369bd041c0cSMatthew G. Knepley } 3370bd041c0cSMatthew G. Knepley } 33719566063dSJacob Faibussowitsch PetscCall(PetscHSetIJDestroy(&ht)); 33729566063dSJacob Faibussowitsch PetscCall(MatXAIJSetPreallocation(mass, 1, dnz, onz, NULL, NULL)); 33739566063dSJacob Faibussowitsch PetscCall(MatSetOption(mass, MAT_NEW_NONZERO_ALLOCATION_ERR, PETSC_TRUE)); 33749566063dSJacob Faibussowitsch PetscCall(PetscFree2(dnz, onz)); 3375bd041c0cSMatthew G. Knepley for (field = 0; field < Nf; ++field) { 3376bd041c0cSMatthew G. Knepley PetscObject obj; 3377bd041c0cSMatthew G. Knepley PetscClassId id; 3378ef0bb6c7SMatthew G. Knepley PetscTabulation T, Tfine; 3379bd041c0cSMatthew G. Knepley PetscQuadrature quad; 3380bd041c0cSMatthew G. Knepley const PetscReal *qpoints, *qweights; 3381bd041c0cSMatthew G. Knepley PetscInt Nq, Nc, i, d; 3382bd041c0cSMatthew G. Knepley 33839566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(prob, field, &obj)); 33849566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 3385ef0bb6c7SMatthew G. Knepley if (id == PETSCFE_CLASSID) { 33869566063dSJacob Faibussowitsch PetscCall(PetscFEGetQuadrature((PetscFE)obj, &quad)); 33879566063dSJacob Faibussowitsch PetscCall(PetscFEGetCellTabulation((PetscFE)obj, 1, &Tfine)); 33889566063dSJacob Faibussowitsch PetscCall(PetscFECreateTabulation((PetscFE)obj, 1, 1, x, 0, &T)); 3389ef0bb6c7SMatthew G. Knepley } else { 33909566063dSJacob Faibussowitsch PetscCall(PetscFVGetQuadrature((PetscFV)obj, &quad)); 3391ef0bb6c7SMatthew G. Knepley } 33929566063dSJacob Faibussowitsch PetscCall(PetscQuadratureGetData(quad, NULL, &Nc, &Nq, &qpoints, &qweights)); 3393bd041c0cSMatthew G. Knepley /* For each fine grid cell */ 3394bd041c0cSMatthew G. Knepley for (cell = cStart; cell < cEnd; ++cell) { 3395bd041c0cSMatthew G. Knepley Vec pointVec; 3396bd041c0cSMatthew G. Knepley PetscScalar *pV; 3397bd041c0cSMatthew G. Knepley PetscSF coarseCellSF = NULL; 3398bd041c0cSMatthew G. Knepley const PetscSFNode *coarseCells; 3399bd041c0cSMatthew G. Knepley PetscInt numCoarseCells, cpdim, q, c, j; 3400bd041c0cSMatthew G. Knepley PetscInt *findices, *cindices; 3401bd041c0cSMatthew G. Knepley PetscInt numFIndices, numCIndices; 3402bd041c0cSMatthew G. Knepley 34039566063dSJacob Faibussowitsch PetscCall(DMPlexGetClosureIndices(dmf, fsection, globalFSection, cell, PETSC_FALSE, &numFIndices, &findices, NULL, NULL)); 34049566063dSJacob Faibussowitsch PetscCall(DMPlexComputeCellGeometryFEM(dmf, cell, NULL, v0, J, invJ, &detJ)); 3405bd041c0cSMatthew G. Knepley /* Get points from the quadrature */ 34069566063dSJacob Faibussowitsch PetscCall(VecCreateSeq(PETSC_COMM_SELF, Nq * dim, &pointVec)); 34079566063dSJacob Faibussowitsch PetscCall(VecSetBlockSize(pointVec, dim)); 34089566063dSJacob Faibussowitsch PetscCall(VecGetArray(pointVec, &pV)); 3409bd041c0cSMatthew G. Knepley for (q = 0; q < Nq; ++q) { 3410c330f8ffSToby Isaac const PetscReal xi0[3] = {-1., -1., -1.}; 3411c330f8ffSToby Isaac 3412bd041c0cSMatthew G. Knepley /* Transform point to real space */ 3413c330f8ffSToby Isaac CoordinatesRefToReal(dim, dim, xi0, v0, J, &qpoints[q * dim], x); 3414bd041c0cSMatthew G. Knepley for (d = 0; d < dim; ++d) pV[q * dim + d] = x[d]; 3415bd041c0cSMatthew G. Knepley } 34169566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(pointVec, &pV)); 3417bd041c0cSMatthew G. Knepley /* Get set of coarse cells that overlap points (would like to group points by coarse cell) */ 34189566063dSJacob Faibussowitsch PetscCall(DMLocatePoints(dmc, pointVec, DM_POINTLOCATION_NEAREST, &coarseCellSF)); 3419bd041c0cSMatthew G. Knepley /* Update matrix */ 34209566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(coarseCellSF, NULL, &numCoarseCells, NULL, &coarseCells)); 34215f80ce2aSJacob Faibussowitsch PetscCheck(numCoarseCells == Nq, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Not all closure points located"); 34229566063dSJacob Faibussowitsch PetscCall(VecGetArray(pointVec, &pV)); 3423bd041c0cSMatthew G. Knepley for (ccell = 0; ccell < numCoarseCells; ++ccell) { 3424bd041c0cSMatthew G. Knepley PetscReal pVReal[3]; 3425c330f8ffSToby Isaac const PetscReal xi0[3] = {-1., -1., -1.}; 3426c330f8ffSToby Isaac 34279566063dSJacob Faibussowitsch PetscCall(DMPlexGetClosureIndices(dmc, csection, globalCSection, coarseCells[ccell].index, PETSC_FALSE, &numCIndices, &cindices, NULL, NULL)); 3428bd041c0cSMatthew G. Knepley /* Transform points from real space to coarse reference space */ 34299566063dSJacob Faibussowitsch PetscCall(DMPlexComputeCellGeometryFEM(dmc, coarseCells[ccell].index, NULL, v0c, Jc, invJc, &detJc)); 3430bd041c0cSMatthew G. Knepley for (d = 0; d < dim; ++d) pVReal[d] = PetscRealPart(pV[ccell * dim + d]); 3431c330f8ffSToby Isaac CoordinatesRealToRef(dim, dim, xi0, v0c, invJc, pVReal, x); 3432bd041c0cSMatthew G. Knepley 3433bd041c0cSMatthew G. Knepley if (id == PETSCFE_CLASSID) { 3434bd041c0cSMatthew G. Knepley PetscFE fe = (PetscFE)obj; 3435bd041c0cSMatthew G. Knepley 3436bd041c0cSMatthew G. Knepley /* Evaluate coarse basis on contained point */ 34379566063dSJacob Faibussowitsch PetscCall(PetscFEGetDimension(fe, &cpdim)); 34389566063dSJacob Faibussowitsch PetscCall(PetscFEComputeTabulation(fe, 1, x, 0, T)); 3439bd041c0cSMatthew G. Knepley /* Get elemMat entries by multiplying by weight */ 3440bd041c0cSMatthew G. Knepley for (i = 0; i < numFIndices; ++i) { 34419566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(elemMat, cpdim)); 3442bd041c0cSMatthew G. Knepley for (j = 0; j < cpdim; ++j) { 3443ef0bb6c7SMatthew G. Knepley for (c = 0; c < Nc; ++c) elemMat[j] += T->T[0][j * Nc + c] * Tfine->T[0][(ccell * numFIndices + i) * Nc + c] * qweights[ccell * Nc + c] * detJ; 3444bd041c0cSMatthew G. Knepley } 3445bd041c0cSMatthew G. Knepley /* Update interpolator */ 34469566063dSJacob Faibussowitsch if (mesh->printFEM > 1) PetscCall(DMPrintCellMatrix(cell, name, 1, numCIndices, elemMat)); 344763a3b9bcSJacob Faibussowitsch PetscCheck(numCIndices == cpdim, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Number of element matrix columns %" PetscInt_FMT " != %" PetscInt_FMT, numCIndices, cpdim); 34489566063dSJacob Faibussowitsch PetscCall(MatSetValues(mass, 1, &findices[i], numCIndices, cindices, elemMat, ADD_VALUES)); 3449bd041c0cSMatthew G. Knepley } 3450bd041c0cSMatthew G. Knepley } else { 3451bd041c0cSMatthew G. Knepley cpdim = 1; 3452bd041c0cSMatthew G. Knepley for (i = 0; i < numFIndices; ++i) { 34539566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(elemMat, cpdim)); 3454bd041c0cSMatthew G. Knepley for (j = 0; j < cpdim; ++j) { 3455bd041c0cSMatthew G. Knepley for (c = 0; c < Nc; ++c) elemMat[j] += 1.0 * 1.0 * qweights[ccell * Nc + c] * detJ; 3456bd041c0cSMatthew G. Knepley } 3457bd041c0cSMatthew G. Knepley /* Update interpolator */ 34589566063dSJacob Faibussowitsch if (mesh->printFEM > 1) PetscCall(DMPrintCellMatrix(cell, name, 1, numCIndices, elemMat)); 345963a3b9bcSJacob Faibussowitsch PetscCall(PetscPrintf(PETSC_COMM_SELF, "Nq: %" PetscInt_FMT " %" PetscInt_FMT " Nf: %" PetscInt_FMT " %" PetscInt_FMT " Nc: %" PetscInt_FMT " %" PetscInt_FMT "\n", ccell, Nq, i, numFIndices, j, numCIndices)); 346063a3b9bcSJacob Faibussowitsch PetscCheck(numCIndices == cpdim, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Number of element matrix columns %" PetscInt_FMT " != %" PetscInt_FMT, numCIndices, cpdim); 34619566063dSJacob Faibussowitsch PetscCall(MatSetValues(mass, 1, &findices[i], numCIndices, cindices, elemMat, ADD_VALUES)); 3462bd041c0cSMatthew G. Knepley } 3463bd041c0cSMatthew G. Knepley } 34649566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreClosureIndices(dmc, csection, globalCSection, coarseCells[ccell].index, PETSC_FALSE, &numCIndices, &cindices, NULL, NULL)); 3465bd041c0cSMatthew G. Knepley } 34669566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(pointVec, &pV)); 34679566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&coarseCellSF)); 34689566063dSJacob Faibussowitsch PetscCall(VecDestroy(&pointVec)); 34699566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreClosureIndices(dmf, fsection, globalFSection, cell, PETSC_FALSE, &numFIndices, &findices, NULL, NULL)); 3470bd041c0cSMatthew G. Knepley } 34719566063dSJacob Faibussowitsch if (id == PETSCFE_CLASSID) PetscCall(PetscTabulationDestroy(&T)); 3472bd041c0cSMatthew G. Knepley } 34739566063dSJacob Faibussowitsch PetscCall(PetscFree3(v0, J, invJ)); 34749566063dSJacob Faibussowitsch PetscCall(PetscFree3(v0c, Jc, invJc)); 34759566063dSJacob Faibussowitsch PetscCall(PetscFree(elemMat)); 34769566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(mass, MAT_FINAL_ASSEMBLY)); 34779566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(mass, MAT_FINAL_ASSEMBLY)); 34783ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3479bd041c0cSMatthew G. Knepley } 3480bd041c0cSMatthew G. Knepley 3481bd041c0cSMatthew G. Knepley /*@ 348246fa42a0SMatthew G. Knepley DMPlexComputeInjectorFEM - Compute a mapping from coarse unknowns to fine unknowns 348346fa42a0SMatthew G. Knepley 348446fa42a0SMatthew G. Knepley Input Parameters: 348546fa42a0SMatthew G. Knepley + dmc - The coarse mesh 348660225df5SJacob Faibussowitsch . dmf - The fine mesh 348746fa42a0SMatthew G. Knepley - user - The user context 348846fa42a0SMatthew G. Knepley 348946fa42a0SMatthew G. Knepley Output Parameter: 349046fa42a0SMatthew G. Knepley . sc - The mapping 349146fa42a0SMatthew G. Knepley 349246fa42a0SMatthew G. Knepley Level: developer 349346fa42a0SMatthew G. Knepley 3494ae3cf2c1SStefano Zampini .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexComputeInterpolatorNested()` 349546fa42a0SMatthew G. Knepley @*/ 3496d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeInjectorFEM(DM dmc, DM dmf, VecScatter *sc, void *user) 3497d71ae5a4SJacob Faibussowitsch { 3498e9d4ef1bSMatthew G. Knepley PetscDS prob; 34997c927364SMatthew G. Knepley PetscFE *feRef; 350097c42addSMatthew G. Knepley PetscFV *fvRef; 35017c927364SMatthew G. Knepley Vec fv, cv; 35027c927364SMatthew G. Knepley IS fis, cis; 35037c927364SMatthew G. Knepley PetscSection fsection, fglobalSection, csection, cglobalSection; 35047c927364SMatthew G. Knepley PetscInt *cmap, *cellCIndices, *cellFIndices, *cindices, *findices; 3505485ad865SMatthew G. Knepley PetscInt cTotDim, fTotDim = 0, Nf, f, field, cStart, cEnd, c, dim, d, startC, endC, offsetC, offsetF, m; 35066f3d3cbcSMatthew G. Knepley PetscBool *needAvg; 35077c927364SMatthew G. Knepley 35087c927364SMatthew G. Knepley PetscFunctionBegin; 35099566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DMPLEX_InjectorFEM, dmc, dmf, 0, 0)); 35109566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dmf, &dim)); 35119566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dmf, &fsection)); 35129566063dSJacob Faibussowitsch PetscCall(DMGetGlobalSection(dmf, &fglobalSection)); 35139566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dmc, &csection)); 35149566063dSJacob Faibussowitsch PetscCall(DMGetGlobalSection(dmc, &cglobalSection)); 35159566063dSJacob Faibussowitsch PetscCall(PetscSectionGetNumFields(fsection, &Nf)); 35169566063dSJacob Faibussowitsch PetscCall(DMPlexGetSimplexOrBoxCells(dmc, 0, &cStart, &cEnd)); 35179566063dSJacob Faibussowitsch PetscCall(DMGetDS(dmc, &prob)); 35189566063dSJacob Faibussowitsch PetscCall(PetscCalloc3(Nf, &feRef, Nf, &fvRef, Nf, &needAvg)); 35197c927364SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 352097c42addSMatthew G. Knepley PetscObject obj; 352197c42addSMatthew G. Knepley PetscClassId id; 3522aa7890ccSMatthew G. Knepley PetscInt fNb = 0, Nc = 0; 35237c927364SMatthew G. Knepley 35249566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(prob, f, &obj)); 35259566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 352697c42addSMatthew G. Knepley if (id == PETSCFE_CLASSID) { 352797c42addSMatthew G. Knepley PetscFE fe = (PetscFE)obj; 35286f3d3cbcSMatthew G. Knepley PetscSpace sp; 35299b2fc754SMatthew G. Knepley PetscInt maxDegree; 353097c42addSMatthew G. Knepley 35319566063dSJacob Faibussowitsch PetscCall(PetscFERefine(fe, &feRef[f])); 35329566063dSJacob Faibussowitsch PetscCall(PetscFEGetDimension(feRef[f], &fNb)); 35339566063dSJacob Faibussowitsch PetscCall(PetscFEGetNumComponents(fe, &Nc)); 35349566063dSJacob Faibussowitsch PetscCall(PetscFEGetBasisSpace(fe, &sp)); 35359566063dSJacob Faibussowitsch PetscCall(PetscSpaceGetDegree(sp, NULL, &maxDegree)); 35369b2fc754SMatthew G. Knepley if (!maxDegree) needAvg[f] = PETSC_TRUE; 353797c42addSMatthew G. Knepley } else if (id == PETSCFV_CLASSID) { 353897c42addSMatthew G. Knepley PetscFV fv = (PetscFV)obj; 353997c42addSMatthew G. Knepley PetscDualSpace Q; 354097c42addSMatthew G. Knepley 35419566063dSJacob Faibussowitsch PetscCall(PetscFVRefine(fv, &fvRef[f])); 35429566063dSJacob Faibussowitsch PetscCall(PetscFVGetDualSpace(fvRef[f], &Q)); 35439566063dSJacob Faibussowitsch PetscCall(PetscDualSpaceGetDimension(Q, &fNb)); 35449566063dSJacob Faibussowitsch PetscCall(PetscFVGetNumComponents(fv, &Nc)); 35456f3d3cbcSMatthew G. Knepley needAvg[f] = PETSC_TRUE; 354697c42addSMatthew G. Knepley } 3547d172c84bSMatthew G. Knepley fTotDim += fNb; 35487c927364SMatthew G. Knepley } 35499566063dSJacob Faibussowitsch PetscCall(PetscDSGetTotalDimension(prob, &cTotDim)); 35509566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(cTotDim, &cmap)); 35517c927364SMatthew G. Knepley for (field = 0, offsetC = 0, offsetF = 0; field < Nf; ++field) { 35527c927364SMatthew G. Knepley PetscFE feC; 355397c42addSMatthew G. Knepley PetscFV fvC; 35547c927364SMatthew G. Knepley PetscDualSpace QF, QC; 3555d172c84bSMatthew G. Knepley PetscInt order = -1, NcF, NcC, fpdim, cpdim; 35567c927364SMatthew G. Knepley 355797c42addSMatthew G. Knepley if (feRef[field]) { 35589566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(prob, field, (PetscObject *)&feC)); 35599566063dSJacob Faibussowitsch PetscCall(PetscFEGetNumComponents(feC, &NcC)); 35609566063dSJacob Faibussowitsch PetscCall(PetscFEGetNumComponents(feRef[field], &NcF)); 35619566063dSJacob Faibussowitsch PetscCall(PetscFEGetDualSpace(feRef[field], &QF)); 35629566063dSJacob Faibussowitsch PetscCall(PetscDualSpaceGetOrder(QF, &order)); 35639566063dSJacob Faibussowitsch PetscCall(PetscDualSpaceGetDimension(QF, &fpdim)); 35649566063dSJacob Faibussowitsch PetscCall(PetscFEGetDualSpace(feC, &QC)); 35659566063dSJacob Faibussowitsch PetscCall(PetscDualSpaceGetDimension(QC, &cpdim)); 356697c42addSMatthew G. Knepley } else { 35679566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(prob, field, (PetscObject *)&fvC)); 35689566063dSJacob Faibussowitsch PetscCall(PetscFVGetNumComponents(fvC, &NcC)); 35699566063dSJacob Faibussowitsch PetscCall(PetscFVGetNumComponents(fvRef[field], &NcF)); 35709566063dSJacob Faibussowitsch PetscCall(PetscFVGetDualSpace(fvRef[field], &QF)); 35719566063dSJacob Faibussowitsch PetscCall(PetscDualSpaceGetDimension(QF, &fpdim)); 35729566063dSJacob Faibussowitsch PetscCall(PetscFVGetDualSpace(fvC, &QC)); 35739566063dSJacob Faibussowitsch PetscCall(PetscDualSpaceGetDimension(QC, &cpdim)); 357497c42addSMatthew G. Knepley } 357563a3b9bcSJacob Faibussowitsch PetscCheck(NcF == NcC, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of components in fine space field %" PetscInt_FMT " does not match coarse field %" PetscInt_FMT, NcF, NcC); 35767c927364SMatthew G. Knepley for (c = 0; c < cpdim; ++c) { 35777c927364SMatthew G. Knepley PetscQuadrature cfunc; 3578d172c84bSMatthew G. Knepley const PetscReal *cqpoints, *cqweights; 3579d172c84bSMatthew G. Knepley PetscInt NqcC, NpC; 358097c42addSMatthew G. Knepley PetscBool found = PETSC_FALSE; 35817c927364SMatthew G. Knepley 35829566063dSJacob Faibussowitsch PetscCall(PetscDualSpaceGetFunctional(QC, c, &cfunc)); 35839566063dSJacob Faibussowitsch PetscCall(PetscQuadratureGetData(cfunc, NULL, &NqcC, &NpC, &cqpoints, &cqweights)); 358463a3b9bcSJacob Faibussowitsch PetscCheck(NqcC == NcC, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of quadrature components %" PetscInt_FMT " must match number of field components %" PetscInt_FMT, NqcC, NcC); 35851dca8a05SBarry Smith PetscCheck(NpC == 1 || !feRef[field], PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Do not know how to do injection for moments"); 35867c927364SMatthew G. Knepley for (f = 0; f < fpdim; ++f) { 35877c927364SMatthew G. Knepley PetscQuadrature ffunc; 3588d172c84bSMatthew G. Knepley const PetscReal *fqpoints, *fqweights; 35897c927364SMatthew G. Knepley PetscReal sum = 0.0; 3590d172c84bSMatthew G. Knepley PetscInt NqcF, NpF; 35917c927364SMatthew G. Knepley 35929566063dSJacob Faibussowitsch PetscCall(PetscDualSpaceGetFunctional(QF, f, &ffunc)); 35939566063dSJacob Faibussowitsch PetscCall(PetscQuadratureGetData(ffunc, NULL, &NqcF, &NpF, &fqpoints, &fqweights)); 359463a3b9bcSJacob Faibussowitsch PetscCheck(NqcF == NcF, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of quadrature components %" PetscInt_FMT " must match number of field components %" PetscInt_FMT, NqcF, NcF); 35957c927364SMatthew G. Knepley if (NpC != NpF) continue; 35967c927364SMatthew G. Knepley for (d = 0; d < dim; ++d) sum += PetscAbsReal(cqpoints[d] - fqpoints[d]); 35977c927364SMatthew G. Knepley if (sum > 1.0e-9) continue; 3598d172c84bSMatthew G. Knepley for (d = 0; d < NcC; ++d) sum += PetscAbsReal(cqweights[d] * fqweights[d]); 3599d172c84bSMatthew G. Knepley if (sum < 1.0e-9) continue; 3600d172c84bSMatthew G. Knepley cmap[offsetC + c] = offsetF + f; 360197c42addSMatthew G. Knepley found = PETSC_TRUE; 36027c927364SMatthew G. Knepley break; 36037c927364SMatthew G. Knepley } 360497c42addSMatthew G. Knepley if (!found) { 360597c42addSMatthew G. Knepley /* TODO We really want the average here, but some asshole put VecScatter in the interface */ 3606d172c84bSMatthew G. Knepley if (fvRef[field] || (feRef[field] && order == 0)) { 3607d172c84bSMatthew G. Knepley cmap[offsetC + c] = offsetF + 0; 360897c42addSMatthew G. Knepley } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Could not locate matching functional for injection"); 360997c42addSMatthew G. Knepley } 36107c927364SMatthew G. Knepley } 3611d172c84bSMatthew G. Knepley offsetC += cpdim; 3612d172c84bSMatthew G. Knepley offsetF += fpdim; 36137c927364SMatthew G. Knepley } 36149371c9d4SSatish Balay for (f = 0; f < Nf; ++f) { 36159371c9d4SSatish Balay PetscCall(PetscFEDestroy(&feRef[f])); 36169371c9d4SSatish Balay PetscCall(PetscFVDestroy(&fvRef[f])); 36179371c9d4SSatish Balay } 36189566063dSJacob Faibussowitsch PetscCall(PetscFree3(feRef, fvRef, needAvg)); 36197c927364SMatthew G. Knepley 36209566063dSJacob Faibussowitsch PetscCall(DMGetGlobalVector(dmf, &fv)); 36219566063dSJacob Faibussowitsch PetscCall(DMGetGlobalVector(dmc, &cv)); 36229566063dSJacob Faibussowitsch PetscCall(VecGetOwnershipRange(cv, &startC, &endC)); 36239566063dSJacob Faibussowitsch PetscCall(PetscSectionGetConstrainedStorageSize(cglobalSection, &m)); 36249566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(cTotDim, &cellCIndices, fTotDim, &cellFIndices)); 36259566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m, &cindices)); 36269566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m, &findices)); 36277c927364SMatthew G. Knepley for (d = 0; d < m; ++d) cindices[d] = findices[d] = -1; 36287c927364SMatthew G. Knepley for (c = cStart; c < cEnd; ++c) { 36299566063dSJacob Faibussowitsch PetscCall(DMPlexMatGetClosureIndicesRefined(dmf, fsection, fglobalSection, dmc, csection, cglobalSection, c, cellCIndices, cellFIndices)); 36307c927364SMatthew G. Knepley for (d = 0; d < cTotDim; ++d) { 36310bd915a7SMatthew G. Knepley if ((cellCIndices[d] < startC) || (cellCIndices[d] >= endC)) continue; 3632d2457c26SMatthew G. Knepley PetscCheck(!(findices[cellCIndices[d] - startC] >= 0) || !(findices[cellCIndices[d] - startC] != cellFIndices[cmap[d]]), PETSC_COMM_SELF, PETSC_ERR_PLIB, "Cell %" PetscInt_FMT " Coarse dof %" PetscInt_FMT " maps to both %" PetscInt_FMT " and %" PetscInt_FMT, c, cindices[cellCIndices[d] - startC], findices[cellCIndices[d] - startC], cellFIndices[cmap[d]]); 36337c927364SMatthew G. Knepley cindices[cellCIndices[d] - startC] = cellCIndices[d]; 36347c927364SMatthew G. Knepley findices[cellCIndices[d] - startC] = cellFIndices[cmap[d]]; 36357c927364SMatthew G. Knepley } 36367c927364SMatthew G. Knepley } 36379566063dSJacob Faibussowitsch PetscCall(PetscFree(cmap)); 36389566063dSJacob Faibussowitsch PetscCall(PetscFree2(cellCIndices, cellFIndices)); 36397c927364SMatthew G. Knepley 36409566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, m, cindices, PETSC_OWN_POINTER, &cis)); 36419566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, m, findices, PETSC_OWN_POINTER, &fis)); 36429566063dSJacob Faibussowitsch PetscCall(VecScatterCreate(cv, cis, fv, fis, sc)); 36439566063dSJacob Faibussowitsch PetscCall(ISDestroy(&cis)); 36449566063dSJacob Faibussowitsch PetscCall(ISDestroy(&fis)); 36459566063dSJacob Faibussowitsch PetscCall(DMRestoreGlobalVector(dmf, &fv)); 36469566063dSJacob Faibussowitsch PetscCall(DMRestoreGlobalVector(dmc, &cv)); 36479566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DMPLEX_InjectorFEM, dmc, dmf, 0, 0)); 36483ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3649cb1e1211SMatthew G Knepley } 3650a1cf66bbSMatthew G. Knepley 36512f856554SMatthew G. Knepley /*@C 36522f856554SMatthew G. Knepley DMPlexGetCellFields - Retrieve the field values values for a chunk of cells 36532f856554SMatthew G. Knepley 36542f856554SMatthew G. Knepley Input Parameters: 3655a1cb98faSBarry Smith + dm - The `DM` 36562f856554SMatthew G. Knepley . cellIS - The cells to include 36572f856554SMatthew G. Knepley . locX - A local vector with the solution fields 36582f856554SMatthew G. Knepley . locX_t - A local vector with solution field time derivatives, or NULL 36592f856554SMatthew G. Knepley - locA - A local vector with auxiliary fields, or NULL 36602f856554SMatthew G. Knepley 36612f856554SMatthew G. Knepley Output Parameters: 36622f856554SMatthew G. Knepley + u - The field coefficients 36632f856554SMatthew G. Knepley . u_t - The fields derivative coefficients 36642f856554SMatthew G. Knepley - a - The auxiliary field coefficients 36652f856554SMatthew G. Knepley 36662f856554SMatthew G. Knepley Level: developer 36672f856554SMatthew G. Knepley 36681cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexGetFaceFields()` 36692f856554SMatthew G. Knepley @*/ 3670d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexGetCellFields(DM dm, IS cellIS, Vec locX, Vec locX_t, Vec locA, PetscScalar **u, PetscScalar **u_t, PetscScalar **a) 3671d71ae5a4SJacob Faibussowitsch { 36722f856554SMatthew G. Knepley DM plex, plexA = NULL; 3673a6e0b375SMatthew G. Knepley DMEnclosureType encAux; 36742f856554SMatthew G. Knepley PetscSection section, sectionAux; 36752f856554SMatthew G. Knepley PetscDS prob; 36762f856554SMatthew G. Knepley const PetscInt *cells; 36772f856554SMatthew G. Knepley PetscInt cStart, cEnd, numCells, totDim, totDimAux, c; 36782f856554SMatthew G. Knepley 36792f856554SMatthew G. Knepley PetscFunctionBegin; 36802f856554SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 3681064a246eSJacob Faibussowitsch PetscValidHeaderSpecific(locX, VEC_CLASSID, 3); 3682ad540459SPierre Jolivet if (locX_t) PetscValidHeaderSpecific(locX_t, VEC_CLASSID, 4); 3683ad540459SPierre Jolivet if (locA) PetscValidHeaderSpecific(locA, VEC_CLASSID, 5); 36844f572ea9SToby Isaac PetscAssertPointer(u, 6); 36854f572ea9SToby Isaac PetscAssertPointer(u_t, 7); 36864f572ea9SToby Isaac PetscAssertPointer(a, 8); 36879566063dSJacob Faibussowitsch PetscCall(DMPlexConvertPlex(dm, &plex, PETSC_FALSE)); 36889566063dSJacob Faibussowitsch PetscCall(ISGetPointRange(cellIS, &cStart, &cEnd, &cells)); 36899566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, §ion)); 369007218a29SMatthew G. Knepley PetscCall(DMGetCellDS(dm, cells ? cells[cStart] : cStart, &prob, NULL)); 36919566063dSJacob Faibussowitsch PetscCall(PetscDSGetTotalDimension(prob, &totDim)); 36922f856554SMatthew G. Knepley if (locA) { 36932f856554SMatthew G. Knepley DM dmAux; 36942f856554SMatthew G. Knepley PetscDS probAux; 36952f856554SMatthew G. Knepley 36969566063dSJacob Faibussowitsch PetscCall(VecGetDM(locA, &dmAux)); 36979566063dSJacob Faibussowitsch PetscCall(DMGetEnclosureRelation(dmAux, dm, &encAux)); 36989566063dSJacob Faibussowitsch PetscCall(DMPlexConvertPlex(dmAux, &plexA, PETSC_FALSE)); 36999566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dmAux, §ionAux)); 37009566063dSJacob Faibussowitsch PetscCall(DMGetDS(dmAux, &probAux)); 37019566063dSJacob Faibussowitsch PetscCall(PetscDSGetTotalDimension(probAux, &totDimAux)); 37022f856554SMatthew G. Knepley } 37032f856554SMatthew G. Knepley numCells = cEnd - cStart; 37049566063dSJacob Faibussowitsch PetscCall(DMGetWorkArray(dm, numCells * totDim, MPIU_SCALAR, u)); 37059371c9d4SSatish Balay if (locX_t) PetscCall(DMGetWorkArray(dm, numCells * totDim, MPIU_SCALAR, u_t)); 3706ad540459SPierre Jolivet else *u_t = NULL; 37079371c9d4SSatish Balay if (locA) PetscCall(DMGetWorkArray(dm, numCells * totDimAux, MPIU_SCALAR, a)); 3708ad540459SPierre Jolivet else *a = NULL; 37092f856554SMatthew G. Knepley for (c = cStart; c < cEnd; ++c) { 37102f856554SMatthew G. Knepley const PetscInt cell = cells ? cells[c] : c; 37112f856554SMatthew G. Knepley const PetscInt cind = c - cStart; 37122f856554SMatthew G. Knepley PetscScalar *x = NULL, *x_t = NULL, *ul = *u, *ul_t = *u_t, *al = *a; 37132f856554SMatthew G. Knepley PetscInt i; 37142f856554SMatthew G. Knepley 37159566063dSJacob Faibussowitsch PetscCall(DMPlexVecGetClosure(plex, section, locX, cell, NULL, &x)); 37162f856554SMatthew G. Knepley for (i = 0; i < totDim; ++i) ul[cind * totDim + i] = x[i]; 37179566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(plex, section, locX, cell, NULL, &x)); 37182f856554SMatthew G. Knepley if (locX_t) { 37199566063dSJacob Faibussowitsch PetscCall(DMPlexVecGetClosure(plex, section, locX_t, cell, NULL, &x_t)); 37202f856554SMatthew G. Knepley for (i = 0; i < totDim; ++i) ul_t[cind * totDim + i] = x_t[i]; 37219566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(plex, section, locX_t, cell, NULL, &x_t)); 37222f856554SMatthew G. Knepley } 37232f856554SMatthew G. Knepley if (locA) { 37242f856554SMatthew G. Knepley PetscInt subcell; 37259566063dSJacob Faibussowitsch PetscCall(DMGetEnclosurePoint(plexA, dm, encAux, cell, &subcell)); 37269566063dSJacob Faibussowitsch PetscCall(DMPlexVecGetClosure(plexA, sectionAux, locA, subcell, NULL, &x)); 37272f856554SMatthew G. Knepley for (i = 0; i < totDimAux; ++i) al[cind * totDimAux + i] = x[i]; 37289566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(plexA, sectionAux, locA, subcell, NULL, &x)); 37292f856554SMatthew G. Knepley } 37302f856554SMatthew G. Knepley } 37319566063dSJacob Faibussowitsch PetscCall(DMDestroy(&plex)); 37329566063dSJacob Faibussowitsch if (locA) PetscCall(DMDestroy(&plexA)); 37339566063dSJacob Faibussowitsch PetscCall(ISRestorePointRange(cellIS, &cStart, &cEnd, &cells)); 37343ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 37352f856554SMatthew G. Knepley } 37362f856554SMatthew G. Knepley 37372f856554SMatthew G. Knepley /*@C 37382f856554SMatthew G. Knepley DMPlexRestoreCellFields - Restore the field values values for a chunk of cells 37392f856554SMatthew G. Knepley 37402f856554SMatthew G. Knepley Input Parameters: 3741a1cb98faSBarry Smith + dm - The `DM` 37422f856554SMatthew G. Knepley . cellIS - The cells to include 37432f856554SMatthew G. Knepley . locX - A local vector with the solution fields 37442f856554SMatthew G. Knepley . locX_t - A local vector with solution field time derivatives, or NULL 37452f856554SMatthew G. Knepley - locA - A local vector with auxiliary fields, or NULL 37462f856554SMatthew G. Knepley 37472f856554SMatthew G. Knepley Output Parameters: 37482f856554SMatthew G. Knepley + u - The field coefficients 37492f856554SMatthew G. Knepley . u_t - The fields derivative coefficients 37502f856554SMatthew G. Knepley - a - The auxiliary field coefficients 37512f856554SMatthew G. Knepley 37522f856554SMatthew G. Knepley Level: developer 37532f856554SMatthew G. Knepley 37541cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexGetFaceFields()` 37552f856554SMatthew G. Knepley @*/ 3756d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexRestoreCellFields(DM dm, IS cellIS, Vec locX, Vec locX_t, Vec locA, PetscScalar **u, PetscScalar **u_t, PetscScalar **a) 3757d71ae5a4SJacob Faibussowitsch { 37582f856554SMatthew G. Knepley PetscFunctionBegin; 37599566063dSJacob Faibussowitsch PetscCall(DMRestoreWorkArray(dm, 0, MPIU_SCALAR, u)); 37609566063dSJacob Faibussowitsch if (locX_t) PetscCall(DMRestoreWorkArray(dm, 0, MPIU_SCALAR, u_t)); 37619566063dSJacob Faibussowitsch if (locA) PetscCall(DMRestoreWorkArray(dm, 0, MPIU_SCALAR, a)); 37623ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 37632f856554SMatthew G. Knepley } 37642f856554SMatthew G. Knepley 3765a4e35b19SJacob Faibussowitsch static PetscErrorCode DMPlexGetHybridCellFields(DM dm, IS cellIS, Vec locX, Vec locX_t, Vec locA, PetscScalar **u, PetscScalar **u_t, PetscScalar **a) 3766d71ae5a4SJacob Faibussowitsch { 376707218a29SMatthew G. Knepley DM plex, plexA = NULL; 376807218a29SMatthew G. Knepley DMEnclosureType encAux; 376907218a29SMatthew G. Knepley PetscSection section, sectionAux; 377007218a29SMatthew G. Knepley PetscDS ds, dsIn; 37716528b96dSMatthew G. Knepley const PetscInt *cells; 377207218a29SMatthew G. Knepley PetscInt cStart, cEnd, numCells, c, totDim, totDimAux, Nf, f; 37736528b96dSMatthew G. Knepley 37746528b96dSMatthew G. Knepley PetscFunctionBegin; 377507218a29SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 377607218a29SMatthew G. Knepley PetscValidHeaderSpecific(cellIS, IS_CLASSID, 2); 377707218a29SMatthew G. Knepley PetscValidHeaderSpecific(locX, VEC_CLASSID, 3); 377807218a29SMatthew G. Knepley if (locX_t) { PetscValidHeaderSpecific(locX_t, VEC_CLASSID, 4); } 377907218a29SMatthew G. Knepley if (locA) { PetscValidHeaderSpecific(locA, VEC_CLASSID, 5); } 37804f572ea9SToby Isaac PetscAssertPointer(u, 6); 37814f572ea9SToby Isaac PetscAssertPointer(u_t, 7); 37824f572ea9SToby Isaac PetscAssertPointer(a, 8); 378307218a29SMatthew G. Knepley PetscCall(ISGetPointRange(cellIS, &cStart, &cEnd, &cells)); 378407218a29SMatthew G. Knepley numCells = cEnd - cStart; 378507218a29SMatthew G. Knepley PetscCall(DMPlexConvertPlex(dm, &plex, PETSC_FALSE)); 378607218a29SMatthew G. Knepley PetscCall(DMGetLocalSection(dm, §ion)); 378707218a29SMatthew G. Knepley PetscCall(DMGetCellDS(dm, cells ? cells[cStart] : cStart, &ds, &dsIn)); 378807218a29SMatthew G. Knepley PetscCall(PetscDSGetNumFields(dsIn, &Nf)); 378907218a29SMatthew G. Knepley PetscCall(PetscDSGetTotalDimension(dsIn, &totDim)); 379007218a29SMatthew G. Knepley if (locA) { 379107218a29SMatthew G. Knepley DM dmAux; 379207218a29SMatthew G. Knepley PetscDS probAux; 379307218a29SMatthew G. Knepley 379407218a29SMatthew G. Knepley PetscCall(VecGetDM(locA, &dmAux)); 379507218a29SMatthew G. Knepley PetscCall(DMGetEnclosureRelation(dmAux, dm, &encAux)); 379607218a29SMatthew G. Knepley PetscCall(DMPlexConvertPlex(dmAux, &plexA, PETSC_FALSE)); 379707218a29SMatthew G. Knepley PetscCall(DMGetLocalSection(dmAux, §ionAux)); 379807218a29SMatthew G. Knepley PetscCall(DMGetDS(dmAux, &probAux)); 379907218a29SMatthew G. Knepley PetscCall(PetscDSGetTotalDimension(probAux, &totDimAux)); 380007218a29SMatthew G. Knepley } 380107218a29SMatthew G. Knepley PetscCall(DMGetWorkArray(dm, numCells * totDim, MPIU_SCALAR, u)); 380207218a29SMatthew G. Knepley if (locX_t) PetscCall(DMGetWorkArray(dm, numCells * totDim, MPIU_SCALAR, u_t)); 380307218a29SMatthew G. Knepley else { 380407218a29SMatthew G. Knepley *u_t = NULL; 380507218a29SMatthew G. Knepley } 380607218a29SMatthew G. Knepley if (locA) PetscCall(DMGetWorkArray(dm, numCells * totDimAux, MPIU_SCALAR, a)); 380707218a29SMatthew G. Knepley else { 380807218a29SMatthew G. Knepley *a = NULL; 380907218a29SMatthew G. Knepley } 381007218a29SMatthew G. Knepley // Loop over cohesive cells 381107218a29SMatthew G. Knepley for (c = cStart; c < cEnd; ++c) { 381207218a29SMatthew G. Knepley const PetscInt cell = cells ? cells[c] : c; 381307218a29SMatthew G. Knepley const PetscInt cind = c - cStart; 381474a0c561SMatthew G. Knepley PetscScalar *xf = NULL, *xc = NULL, *x = NULL, *xf_t = NULL, *xc_t = NULL; 38158e3a54c0SPierre Jolivet PetscScalar *ul = &(*u)[cind * totDim], *ul_t = PetscSafePointerPlusOffset(*u_t, cind * totDim); 381607218a29SMatthew G. Knepley const PetscInt *cone, *ornt; 381707218a29SMatthew G. Knepley PetscInt Nx = 0, Nxf, s; 381807218a29SMatthew G. Knepley 381907218a29SMatthew G. Knepley PetscCall(DMPlexGetCone(dm, cell, &cone)); 382007218a29SMatthew G. Knepley PetscCall(DMPlexGetConeOrientation(dm, cell, &ornt)); 382107218a29SMatthew G. Knepley // Put in cohesive unknowns 382207218a29SMatthew G. Knepley PetscCall(DMPlexVecGetClosure(plex, section, locX, cell, &Nxf, &xf)); 382374a0c561SMatthew G. Knepley if (locX_t) PetscCall(DMPlexVecGetClosure(plex, section, locX_t, cell, NULL, &xf_t)); 382407218a29SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 382507218a29SMatthew G. Knepley PetscInt fdofIn, foff, foffIn; 382607218a29SMatthew G. Knepley PetscBool cohesive; 382707218a29SMatthew G. Knepley 382807218a29SMatthew G. Knepley PetscCall(PetscDSGetCohesive(dsIn, f, &cohesive)); 382907218a29SMatthew G. Knepley if (!cohesive) continue; 383007218a29SMatthew G. Knepley PetscCall(PetscDSGetFieldSize(dsIn, f, &fdofIn)); 383107218a29SMatthew G. Knepley PetscCall(PetscDSGetFieldOffsetCohesive(ds, f, &foff)); 383207218a29SMatthew G. Knepley PetscCall(PetscDSGetFieldOffsetCohesive(dsIn, f, &foffIn)); 383307218a29SMatthew G. Knepley for (PetscInt i = 0; i < fdofIn; ++i) ul[foffIn + i] = xf[foff + i]; 383474a0c561SMatthew G. Knepley if (locX_t) 383574a0c561SMatthew G. Knepley for (PetscInt i = 0; i < fdofIn; ++i) ul_t[foffIn + i] = xf_t[foff + i]; 383607218a29SMatthew G. Knepley Nx += fdofIn; 383707218a29SMatthew G. Knepley } 383807218a29SMatthew G. Knepley PetscCall(DMPlexVecRestoreClosure(plex, section, locX, cell, &Nxf, &xf)); 383974a0c561SMatthew G. Knepley if (locX_t) PetscCall(DMPlexVecRestoreClosure(plex, section, locX_t, cell, NULL, &xf_t)); 384007218a29SMatthew G. Knepley // Loop over sides of surface 384107218a29SMatthew G. Knepley for (s = 0; s < 2; ++s) { 384207218a29SMatthew G. Knepley const PetscInt *support; 384307218a29SMatthew G. Knepley const PetscInt face = cone[s]; 384407218a29SMatthew G. Knepley PetscInt ssize, ncell, Nxc; 384507218a29SMatthew G. Knepley 384607218a29SMatthew G. Knepley // I don't think I need the face to have 0 orientation in the hybrid cell 384707218a29SMatthew G. Knepley //PetscCheck(!ornt[s], PETSC_COMM_SELF, PETSC_ERR_SUP, "Face %" PetscInt_FMT " in hybrid cell %" PetscInt_FMT " has orientation %" PetscInt_FMT " != 0", face, cell, ornt[s]); 384807218a29SMatthew G. Knepley PetscCall(DMPlexGetSupport(dm, face, &support)); 384907218a29SMatthew G. Knepley PetscCall(DMPlexGetSupportSize(dm, face, &ssize)); 385007218a29SMatthew G. Knepley if (support[0] == cell) ncell = support[1]; 385107218a29SMatthew G. Knepley else if (support[1] == cell) ncell = support[0]; 385207218a29SMatthew G. Knepley else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Face %" PetscInt_FMT " does not have cell %" PetscInt_FMT " in its support", face, cell); 385307218a29SMatthew G. Knepley // Get closure of both face and cell, stick in cell for normal fields and face for cohesive fields 385407218a29SMatthew G. Knepley PetscCall(DMPlexVecGetClosure(plex, section, locX, ncell, &Nxc, &xc)); 385574a0c561SMatthew G. Knepley if (locX_t) PetscCall(DMPlexVecGetClosure(plex, section, locX_t, ncell, NULL, &xc_t)); 385607218a29SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 385707218a29SMatthew G. Knepley PetscInt fdofIn, foffIn; 385807218a29SMatthew G. Knepley PetscBool cohesive; 385907218a29SMatthew G. Knepley 386007218a29SMatthew G. Knepley PetscCall(PetscDSGetCohesive(dsIn, f, &cohesive)); 386107218a29SMatthew G. Knepley if (cohesive) continue; 386207218a29SMatthew G. Knepley PetscCall(PetscDSGetFieldSize(dsIn, f, &fdofIn)); 386307218a29SMatthew G. Knepley PetscCall(PetscDSGetFieldOffsetCohesive(dsIn, f, &foffIn)); 386407218a29SMatthew G. Knepley for (PetscInt i = 0; i < fdofIn; ++i) ul[foffIn + s * fdofIn + i] = xc[foffIn + i]; 386574a0c561SMatthew G. Knepley if (locX_t) 386674a0c561SMatthew G. Knepley for (PetscInt i = 0; i < fdofIn; ++i) ul_t[foffIn + s * fdofIn + i] = xc_t[foffIn + i]; 386707218a29SMatthew G. Knepley Nx += fdofIn; 386807218a29SMatthew G. Knepley } 386907218a29SMatthew G. Knepley PetscCall(DMPlexVecRestoreClosure(plex, section, locX, ncell, &Nxc, &xc)); 387074a0c561SMatthew G. Knepley if (locX_t) PetscCall(DMPlexVecRestoreClosure(plex, section, locX_t, ncell, NULL, &xc_t)); 387107218a29SMatthew G. Knepley } 387207218a29SMatthew G. Knepley PetscCheck(Nx == totDim, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "Closure size %" PetscInt_FMT " for cell %" PetscInt_FMT " does not match DS size %" PetscInt_FMT, Nx, cell, totDim); 387307218a29SMatthew G. Knepley 387407218a29SMatthew G. Knepley if (locA) { 387507218a29SMatthew G. Knepley PetscScalar *al = &(*a)[cind * totDimAux]; 387607218a29SMatthew G. Knepley PetscInt subcell; 387707218a29SMatthew G. Knepley 387807218a29SMatthew G. Knepley PetscCall(DMGetEnclosurePoint(plexA, dm, encAux, cell, &subcell)); 387907218a29SMatthew G. Knepley PetscCall(DMPlexVecGetClosure(plexA, sectionAux, locA, subcell, &Nx, &x)); 388007218a29SMatthew G. Knepley PetscCheck(Nx == totDimAux, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "Closure size %" PetscInt_FMT " for subcell %" PetscInt_FMT "does not match DS size %" PetscInt_FMT, Nx, subcell, totDimAux); 388107218a29SMatthew G. Knepley for (PetscInt i = 0; i < totDimAux; ++i) al[i] = x[i]; 388207218a29SMatthew G. Knepley PetscCall(DMPlexVecRestoreClosure(plexA, sectionAux, locA, subcell, &Nx, &x)); 388307218a29SMatthew G. Knepley } 388407218a29SMatthew G. Knepley } 388507218a29SMatthew G. Knepley PetscCall(DMDestroy(&plex)); 388607218a29SMatthew G. Knepley PetscCall(DMDestroy(&plexA)); 388707218a29SMatthew G. Knepley PetscCall(ISRestorePointRange(cellIS, &cStart, &cEnd, &cells)); 388807218a29SMatthew G. Knepley PetscFunctionReturn(PETSC_SUCCESS); 388907218a29SMatthew G. Knepley } 389007218a29SMatthew G. Knepley 389107218a29SMatthew G. Knepley /* 38923e2b0218SMatthew G. Knepley DMPlexGetHybridFields - Get the field values for the negative side (s = 0) and positive side (s = 1) of the interface 389307218a29SMatthew G. Knepley 389407218a29SMatthew G. Knepley Input Parameters: 389507218a29SMatthew G. Knepley + dm - The full domain DM 389607218a29SMatthew G. Knepley . dmX - An array of DM for the field, say an auxiliary DM, indexed by s 389707218a29SMatthew G. Knepley . dsX - An array of PetscDS for the field, indexed by s 389807218a29SMatthew G. Knepley . cellIS - The interface cells for which we want values 389907218a29SMatthew G. Knepley . locX - An array of local vectors with the field values, indexed by s 390007218a29SMatthew G. Knepley - useCell - Flag to have values come from neighboring cell rather than endcap face 390107218a29SMatthew G. Knepley 390207218a29SMatthew G. Knepley Output Parameter: 390307218a29SMatthew G. Knepley . x - An array of field values, indexed by s 390407218a29SMatthew G. Knepley 390507218a29SMatthew G. Knepley Note: 390676fbde31SPierre Jolivet The arrays in `x` will be allocated using `DMGetWorkArray()`, and must be returned using `DMPlexRestoreHybridFields()`. 390707218a29SMatthew G. Knepley 390807218a29SMatthew G. Knepley Level: advanced 390907218a29SMatthew G. Knepley 391076fbde31SPierre Jolivet .seealso: `DMPlexRestoreHybridFields()`, `DMGetWorkArray()` 391107218a29SMatthew G. Knepley */ 391207218a29SMatthew G. Knepley static PetscErrorCode DMPlexGetHybridFields(DM dm, DM dmX[], PetscDS dsX[], IS cellIS, Vec locX[], PetscBool useCell, PetscScalar *x[]) 391307218a29SMatthew G. Knepley { 391407218a29SMatthew G. Knepley DM plexX[2]; 391507218a29SMatthew G. Knepley DMEnclosureType encX[2]; 391607218a29SMatthew G. Knepley PetscSection sectionX[2]; 391707218a29SMatthew G. Knepley const PetscInt *cells; 391807218a29SMatthew G. Knepley PetscInt cStart, cEnd, numCells, c, s, totDimX[2]; 391907218a29SMatthew G. Knepley 392007218a29SMatthew G. Knepley PetscFunctionBegin; 39214f572ea9SToby Isaac PetscAssertPointer(locX, 5); 392207218a29SMatthew G. Knepley if (!locX[0] || !locX[1]) PetscFunctionReturn(PETSC_SUCCESS); 39234f572ea9SToby Isaac PetscAssertPointer(dmX, 2); 39244f572ea9SToby Isaac PetscAssertPointer(dsX, 3); 392507218a29SMatthew G. Knepley PetscValidHeaderSpecific(cellIS, IS_CLASSID, 4); 39264f572ea9SToby Isaac PetscAssertPointer(x, 7); 39279566063dSJacob Faibussowitsch PetscCall(ISGetPointRange(cellIS, &cStart, &cEnd, &cells)); 39286528b96dSMatthew G. Knepley numCells = cEnd - cStart; 3929148442b3SMatthew G. Knepley for (s = 0; s < 2; ++s) { 393007218a29SMatthew G. Knepley PetscValidHeaderSpecific(dmX[s], DM_CLASSID, 2); 393107218a29SMatthew G. Knepley PetscValidHeaderSpecific(dsX[s], PETSCDS_CLASSID, 3); 393207218a29SMatthew G. Knepley PetscValidHeaderSpecific(locX[s], VEC_CLASSID, 5); 393307218a29SMatthew G. Knepley PetscCall(DMPlexConvertPlex(dmX[s], &plexX[s], PETSC_FALSE)); 393407218a29SMatthew G. Knepley PetscCall(DMGetEnclosureRelation(dmX[s], dm, &encX[s])); 393507218a29SMatthew G. Knepley PetscCall(DMGetLocalSection(dmX[s], §ionX[s])); 393607218a29SMatthew G. Knepley PetscCall(PetscDSGetTotalDimension(dsX[s], &totDimX[s])); 393707218a29SMatthew G. Knepley PetscCall(DMGetWorkArray(dmX[s], numCells * totDimX[s], MPIU_SCALAR, &x[s])); 393804c51a94SMatthew G. Knepley } 3939148442b3SMatthew G. Knepley for (c = cStart; c < cEnd; ++c) { 39406528b96dSMatthew G. Knepley const PetscInt cell = cells ? cells[c] : c; 39416528b96dSMatthew G. Knepley const PetscInt cind = c - cStart; 39426528b96dSMatthew G. Knepley const PetscInt *cone, *ornt; 39436528b96dSMatthew G. Knepley 39449566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, cell, &cone)); 39459566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeOrientation(dm, cell, &ornt)); 394607218a29SMatthew G. Knepley //PetscCheck(!ornt[0], PETSC_COMM_SELF, PETSC_ERR_SUP, "Face %" PetscInt_FMT " in hybrid cell %" PetscInt_FMT " has orientation %" PetscInt_FMT " != 0", cone[0], cell, ornt[0]); 3947148442b3SMatthew G. Knepley for (s = 0; s < 2; ++s) { 394807218a29SMatthew G. Knepley const PetscInt tdX = totDimX[s]; 394907218a29SMatthew G. Knepley PetscScalar *closure = NULL, *xl = &x[s][cind * tdX]; 395007218a29SMatthew G. Knepley PetscInt face = cone[s], point = face, subpoint, Nx, i; 395107218a29SMatthew G. Knepley 395207218a29SMatthew G. Knepley if (useCell) { 39535fedec97SMatthew G. Knepley const PetscInt *support; 395407218a29SMatthew G. Knepley PetscInt ssize; 39556528b96dSMatthew G. Knepley 395607218a29SMatthew G. Knepley PetscCall(DMPlexGetSupport(dm, face, &support)); 395707218a29SMatthew G. Knepley PetscCall(DMPlexGetSupportSize(dm, face, &ssize)); 395807218a29SMatthew G. Knepley PetscCheck(ssize == 2, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Face %" PetscInt_FMT " from cell %" PetscInt_FMT " has support size %" PetscInt_FMT " != 2", face, cell, ssize); 395907218a29SMatthew G. Knepley if (support[0] == cell) point = support[1]; 396007218a29SMatthew G. Knepley else if (support[1] == cell) point = support[0]; 396107218a29SMatthew G. Knepley else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Face %" PetscInt_FMT " does not have cell %" PetscInt_FMT " in its support", face, cell); 396207218a29SMatthew G. Knepley } 396307218a29SMatthew G. Knepley PetscCall(DMGetEnclosurePoint(plexX[s], dm, encX[s], point, &subpoint)); 3964e8e188d2SZach Atkins PetscCall(DMPlexVecGetOrientedClosure_Internal(plexX[s], sectionX[s], PETSC_FALSE, locX[s], subpoint, ornt[s], &Nx, &closure)); 396507218a29SMatthew G. Knepley PetscCheck(Nx == tdX, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "Closure size %" PetscInt_FMT " for subpoint %" PetscInt_FMT " does not match DS size %" PetscInt_FMT, Nx, subpoint, tdX); 396607218a29SMatthew G. Knepley for (i = 0; i < Nx; ++i) xl[i] = closure[i]; 396707218a29SMatthew G. Knepley PetscCall(DMPlexVecRestoreClosure(plexX[s], sectionX[s], locX[s], subpoint, &Nx, &closure)); 39686528b96dSMatthew G. Knepley } 39696528b96dSMatthew G. Knepley } 397007218a29SMatthew G. Knepley for (s = 0; s < 2; ++s) PetscCall(DMDestroy(&plexX[s])); 39719566063dSJacob Faibussowitsch PetscCall(ISRestorePointRange(cellIS, &cStart, &cEnd, &cells)); 39723ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 39736528b96dSMatthew G. Knepley } 39746528b96dSMatthew G. Knepley 397507218a29SMatthew G. Knepley static PetscErrorCode DMPlexRestoreHybridFields(DM dm, DM dmX[], PetscDS dsX[], IS cellIS, Vec locX[], PetscBool useCell, PetscScalar *x[]) 3976d71ae5a4SJacob Faibussowitsch { 39776528b96dSMatthew G. Knepley PetscFunctionBegin; 397807218a29SMatthew G. Knepley if (!locX[0] || !locX[1]) PetscFunctionReturn(PETSC_SUCCESS); 397907218a29SMatthew G. Knepley PetscCall(DMRestoreWorkArray(dmX[0], 0, MPIU_SCALAR, &x[0])); 398007218a29SMatthew G. Knepley PetscCall(DMRestoreWorkArray(dmX[1], 0, MPIU_SCALAR, &x[1])); 39813ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 39826528b96dSMatthew G. Knepley } 39836528b96dSMatthew G. Knepley 39842f856554SMatthew G. Knepley /*@C 39852f856554SMatthew G. Knepley DMPlexGetFaceFields - Retrieve the field values values for a chunk of faces 39862f856554SMatthew G. Knepley 39872f856554SMatthew G. Knepley Input Parameters: 3988a1cb98faSBarry Smith + dm - The `DM` 39892f856554SMatthew G. Knepley . fStart - The first face to include 39902f856554SMatthew G. Knepley . fEnd - The first face to exclude 39912f856554SMatthew G. Knepley . locX - A local vector with the solution fields 39922f856554SMatthew G. Knepley . locX_t - A local vector with solution field time derivatives, or NULL 39932f856554SMatthew G. Knepley . faceGeometry - A local vector with face geometry 39942f856554SMatthew G. Knepley . cellGeometry - A local vector with cell geometry 399560225df5SJacob Faibussowitsch - locGrad - A local vector with field gradients, or NULL 39962f856554SMatthew G. Knepley 39972f856554SMatthew G. Knepley Output Parameters: 39982f856554SMatthew G. Knepley + Nface - The number of faces with field values 39992f856554SMatthew G. Knepley . uL - The field values at the left side of the face 40002f856554SMatthew G. Knepley - uR - The field values at the right side of the face 40012f856554SMatthew G. Knepley 40022f856554SMatthew G. Knepley Level: developer 40032f856554SMatthew G. Knepley 40041cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexGetCellFields()` 40052f856554SMatthew G. Knepley @*/ 4006d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexGetFaceFields(DM dm, PetscInt fStart, PetscInt fEnd, Vec locX, Vec locX_t, Vec faceGeometry, Vec cellGeometry, Vec locGrad, PetscInt *Nface, PetscScalar **uL, PetscScalar **uR) 4007d71ae5a4SJacob Faibussowitsch { 40082f856554SMatthew G. Knepley DM dmFace, dmCell, dmGrad = NULL; 40092f856554SMatthew G. Knepley PetscSection section; 40102f856554SMatthew G. Knepley PetscDS prob; 40112f856554SMatthew G. Knepley DMLabel ghostLabel; 40122f856554SMatthew G. Knepley const PetscScalar *facegeom, *cellgeom, *x, *lgrad; 40132f856554SMatthew G. Knepley PetscBool *isFE; 40142f856554SMatthew G. Knepley PetscInt dim, Nf, f, Nc, numFaces = fEnd - fStart, iface, face; 40152f856554SMatthew G. Knepley 40162f856554SMatthew G. Knepley PetscFunctionBegin; 40172f856554SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 40182f856554SMatthew G. Knepley PetscValidHeaderSpecific(locX, VEC_CLASSID, 4); 4019ad540459SPierre Jolivet if (locX_t) PetscValidHeaderSpecific(locX_t, VEC_CLASSID, 5); 40202f856554SMatthew G. Knepley PetscValidHeaderSpecific(faceGeometry, VEC_CLASSID, 6); 40212f856554SMatthew G. Knepley PetscValidHeaderSpecific(cellGeometry, VEC_CLASSID, 7); 4022ad540459SPierre Jolivet if (locGrad) PetscValidHeaderSpecific(locGrad, VEC_CLASSID, 8); 40234f572ea9SToby Isaac PetscAssertPointer(uL, 10); 40244f572ea9SToby Isaac PetscAssertPointer(uR, 11); 40259566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 40269566063dSJacob Faibussowitsch PetscCall(DMGetDS(dm, &prob)); 40279566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, §ion)); 40289566063dSJacob Faibussowitsch PetscCall(PetscDSGetNumFields(prob, &Nf)); 40299566063dSJacob Faibussowitsch PetscCall(PetscDSGetTotalComponents(prob, &Nc)); 40309566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(Nf, &isFE)); 40312f856554SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 40322f856554SMatthew G. Knepley PetscObject obj; 40332f856554SMatthew G. Knepley PetscClassId id; 40342f856554SMatthew G. Knepley 40359566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(prob, f, &obj)); 40369566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 40379371c9d4SSatish Balay if (id == PETSCFE_CLASSID) { 40389371c9d4SSatish Balay isFE[f] = PETSC_TRUE; 40399371c9d4SSatish Balay } else if (id == PETSCFV_CLASSID) { 40409371c9d4SSatish Balay isFE[f] = PETSC_FALSE; 40419371c9d4SSatish Balay } else { 40429371c9d4SSatish Balay isFE[f] = PETSC_FALSE; 40439371c9d4SSatish Balay } 40442f856554SMatthew G. Knepley } 40459566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, "ghost", &ghostLabel)); 40469566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(locX, &x)); 40479566063dSJacob Faibussowitsch PetscCall(VecGetDM(faceGeometry, &dmFace)); 40489566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(faceGeometry, &facegeom)); 40499566063dSJacob Faibussowitsch PetscCall(VecGetDM(cellGeometry, &dmCell)); 40509566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(cellGeometry, &cellgeom)); 40512f856554SMatthew G. Knepley if (locGrad) { 40529566063dSJacob Faibussowitsch PetscCall(VecGetDM(locGrad, &dmGrad)); 40539566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(locGrad, &lgrad)); 40542f856554SMatthew G. Knepley } 40559566063dSJacob Faibussowitsch PetscCall(DMGetWorkArray(dm, numFaces * Nc, MPIU_SCALAR, uL)); 40569566063dSJacob Faibussowitsch PetscCall(DMGetWorkArray(dm, numFaces * Nc, MPIU_SCALAR, uR)); 40572f856554SMatthew G. Knepley /* Right now just eat the extra work for FE (could make a cell loop) */ 40582f856554SMatthew G. Knepley for (face = fStart, iface = 0; face < fEnd; ++face) { 40592f856554SMatthew G. Knepley const PetscInt *cells; 40602f856554SMatthew G. Knepley PetscFVFaceGeom *fg; 40612f856554SMatthew G. Knepley PetscFVCellGeom *cgL, *cgR; 40622f856554SMatthew G. Knepley PetscScalar *xL, *xR, *gL, *gR; 40632f856554SMatthew G. Knepley PetscScalar *uLl = *uL, *uRl = *uR; 40642f856554SMatthew G. Knepley PetscInt ghost, nsupp, nchild; 40652f856554SMatthew G. Knepley 40669566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(ghostLabel, face, &ghost)); 40679566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dm, face, &nsupp)); 40689566063dSJacob Faibussowitsch PetscCall(DMPlexGetTreeChildren(dm, face, &nchild, NULL)); 40692f856554SMatthew G. Knepley if (ghost >= 0 || nsupp > 2 || nchild > 0) continue; 40709566063dSJacob Faibussowitsch PetscCall(DMPlexPointLocalRead(dmFace, face, facegeom, &fg)); 40719566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(dm, face, &cells)); 40729566063dSJacob Faibussowitsch PetscCall(DMPlexPointLocalRead(dmCell, cells[0], cellgeom, &cgL)); 40739566063dSJacob Faibussowitsch PetscCall(DMPlexPointLocalRead(dmCell, cells[1], cellgeom, &cgR)); 40742f856554SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 40752f856554SMatthew G. Knepley PetscInt off; 40762f856554SMatthew G. Knepley 40779566063dSJacob Faibussowitsch PetscCall(PetscDSGetComponentOffset(prob, f, &off)); 40782f856554SMatthew G. Knepley if (isFE[f]) { 40792f856554SMatthew G. Knepley const PetscInt *cone; 40802f856554SMatthew G. Knepley PetscInt comp, coneSizeL, coneSizeR, faceLocL, faceLocR, ldof, rdof, d; 40812f856554SMatthew G. Knepley 40822f856554SMatthew G. Knepley xL = xR = NULL; 40839566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldComponents(section, f, &comp)); 40849566063dSJacob Faibussowitsch PetscCall(DMPlexVecGetClosure(dm, section, locX, cells[0], &ldof, (PetscScalar **)&xL)); 40859566063dSJacob Faibussowitsch PetscCall(DMPlexVecGetClosure(dm, section, locX, cells[1], &rdof, (PetscScalar **)&xR)); 40869566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, cells[0], &cone)); 40879566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, cells[0], &coneSizeL)); 40889371c9d4SSatish Balay for (faceLocL = 0; faceLocL < coneSizeL; ++faceLocL) 40899371c9d4SSatish Balay if (cone[faceLocL] == face) break; 40909566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, cells[1], &cone)); 40919566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, cells[1], &coneSizeR)); 40929371c9d4SSatish Balay for (faceLocR = 0; faceLocR < coneSizeR; ++faceLocR) 40939371c9d4SSatish Balay if (cone[faceLocR] == face) break; 40941dca8a05SBarry Smith PetscCheck(faceLocL != coneSizeL || faceLocR != coneSizeR, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Could not find face %" PetscInt_FMT " in cone of cell %" PetscInt_FMT " or cell %" PetscInt_FMT, face, cells[0], cells[1]); 40952f856554SMatthew G. Knepley /* Check that FEM field has values in the right cell (sometimes its an FV ghost cell) */ 40962f856554SMatthew G. Knepley /* TODO: this is a hack that might not be right for nonconforming */ 40972f856554SMatthew G. Knepley if (faceLocL < coneSizeL) { 40989566063dSJacob Faibussowitsch PetscCall(PetscFEEvaluateFaceFields_Internal(prob, f, faceLocL, xL, &uLl[iface * Nc + off])); 40999566063dSJacob Faibussowitsch if (rdof == ldof && faceLocR < coneSizeR) PetscCall(PetscFEEvaluateFaceFields_Internal(prob, f, faceLocR, xR, &uRl[iface * Nc + off])); 41002f856554SMatthew G. Knepley else { 41019371c9d4SSatish Balay for (d = 0; d < comp; ++d) uRl[iface * Nc + off + d] = uLl[iface * Nc + off + d]; 41029371c9d4SSatish Balay } 41039371c9d4SSatish Balay } else { 41049566063dSJacob Faibussowitsch PetscCall(PetscFEEvaluateFaceFields_Internal(prob, f, faceLocR, xR, &uRl[iface * Nc + off])); 41059566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldComponents(section, f, &comp)); 41062f856554SMatthew G. Knepley for (d = 0; d < comp; ++d) uLl[iface * Nc + off + d] = uRl[iface * Nc + off + d]; 41072f856554SMatthew G. Knepley } 41089566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(dm, section, locX, cells[0], &ldof, (PetscScalar **)&xL)); 41099566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(dm, section, locX, cells[1], &rdof, (PetscScalar **)&xR)); 41102f856554SMatthew G. Knepley } else { 41112f856554SMatthew G. Knepley PetscFV fv; 41122f856554SMatthew G. Knepley PetscInt numComp, c; 41132f856554SMatthew G. Knepley 41149566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(prob, f, (PetscObject *)&fv)); 41159566063dSJacob Faibussowitsch PetscCall(PetscFVGetNumComponents(fv, &numComp)); 41169566063dSJacob Faibussowitsch PetscCall(DMPlexPointLocalFieldRead(dm, cells[0], f, x, &xL)); 41179566063dSJacob Faibussowitsch PetscCall(DMPlexPointLocalFieldRead(dm, cells[1], f, x, &xR)); 41182f856554SMatthew G. Knepley if (dmGrad) { 41192f856554SMatthew G. Knepley PetscReal dxL[3], dxR[3]; 41202f856554SMatthew G. Knepley 41219566063dSJacob Faibussowitsch PetscCall(DMPlexPointLocalRead(dmGrad, cells[0], lgrad, &gL)); 41229566063dSJacob Faibussowitsch PetscCall(DMPlexPointLocalRead(dmGrad, cells[1], lgrad, &gR)); 41232f856554SMatthew G. Knepley DMPlex_WaxpyD_Internal(dim, -1, cgL->centroid, fg->centroid, dxL); 41242f856554SMatthew G. Knepley DMPlex_WaxpyD_Internal(dim, -1, cgR->centroid, fg->centroid, dxR); 41252f856554SMatthew G. Knepley for (c = 0; c < numComp; ++c) { 41262f856554SMatthew G. Knepley uLl[iface * Nc + off + c] = xL[c] + DMPlex_DotD_Internal(dim, &gL[c * dim], dxL); 41272f856554SMatthew G. Knepley uRl[iface * Nc + off + c] = xR[c] + DMPlex_DotD_Internal(dim, &gR[c * dim], dxR); 41282f856554SMatthew G. Knepley } 41292f856554SMatthew G. Knepley } else { 41302f856554SMatthew G. Knepley for (c = 0; c < numComp; ++c) { 41312f856554SMatthew G. Knepley uLl[iface * Nc + off + c] = xL[c]; 41322f856554SMatthew G. Knepley uRl[iface * Nc + off + c] = xR[c]; 41332f856554SMatthew G. Knepley } 41342f856554SMatthew G. Knepley } 41352f856554SMatthew G. Knepley } 41362f856554SMatthew G. Knepley } 41372f856554SMatthew G. Knepley ++iface; 41382f856554SMatthew G. Knepley } 41392f856554SMatthew G. Knepley *Nface = iface; 41409566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(locX, &x)); 41419566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(faceGeometry, &facegeom)); 41429566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(cellGeometry, &cellgeom)); 414348a46eb9SPierre Jolivet if (locGrad) PetscCall(VecRestoreArrayRead(locGrad, &lgrad)); 41449566063dSJacob Faibussowitsch PetscCall(PetscFree(isFE)); 41453ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 41462f856554SMatthew G. Knepley } 41472f856554SMatthew G. Knepley 41482f856554SMatthew G. Knepley /*@C 41492f856554SMatthew G. Knepley DMPlexRestoreFaceFields - Restore the field values values for a chunk of faces 41502f856554SMatthew G. Knepley 41512f856554SMatthew G. Knepley Input Parameters: 4152a1cb98faSBarry Smith + dm - The `DM` 41532f856554SMatthew G. Knepley . fStart - The first face to include 41542f856554SMatthew G. Knepley . fEnd - The first face to exclude 41552f856554SMatthew G. Knepley . locX - A local vector with the solution fields 41562f856554SMatthew G. Knepley . locX_t - A local vector with solution field time derivatives, or NULL 41572f856554SMatthew G. Knepley . faceGeometry - A local vector with face geometry 41582f856554SMatthew G. Knepley . cellGeometry - A local vector with cell geometry 415960225df5SJacob Faibussowitsch - locGrad - A local vector with field gradients, or NULL 41602f856554SMatthew G. Knepley 41612f856554SMatthew G. Knepley Output Parameters: 41622f856554SMatthew G. Knepley + Nface - The number of faces with field values 41632f856554SMatthew G. Knepley . uL - The field values at the left side of the face 41642f856554SMatthew G. Knepley - uR - The field values at the right side of the face 41652f856554SMatthew G. Knepley 41662f856554SMatthew G. Knepley Level: developer 41672f856554SMatthew G. Knepley 41681cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexGetFaceFields()` 41692f856554SMatthew G. Knepley @*/ 4170d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexRestoreFaceFields(DM dm, PetscInt fStart, PetscInt fEnd, Vec locX, Vec locX_t, Vec faceGeometry, Vec cellGeometry, Vec locGrad, PetscInt *Nface, PetscScalar **uL, PetscScalar **uR) 4171d71ae5a4SJacob Faibussowitsch { 41722f856554SMatthew G. Knepley PetscFunctionBegin; 41739566063dSJacob Faibussowitsch PetscCall(DMRestoreWorkArray(dm, 0, MPIU_SCALAR, uL)); 41749566063dSJacob Faibussowitsch PetscCall(DMRestoreWorkArray(dm, 0, MPIU_SCALAR, uR)); 41753ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 41762f856554SMatthew G. Knepley } 41772f856554SMatthew G. Knepley 41782f856554SMatthew G. Knepley /*@C 41792f856554SMatthew G. Knepley DMPlexGetFaceGeometry - Retrieve the geometric values for a chunk of faces 41802f856554SMatthew G. Knepley 41812f856554SMatthew G. Knepley Input Parameters: 4182a1cb98faSBarry Smith + dm - The `DM` 41832f856554SMatthew G. Knepley . fStart - The first face to include 41842f856554SMatthew G. Knepley . fEnd - The first face to exclude 41852f856554SMatthew G. Knepley . faceGeometry - A local vector with face geometry 41862f856554SMatthew G. Knepley - cellGeometry - A local vector with cell geometry 41872f856554SMatthew G. Knepley 41882f856554SMatthew G. Knepley Output Parameters: 41892f856554SMatthew G. Knepley + Nface - The number of faces with field values 41902f856554SMatthew G. Knepley . fgeom - The extract the face centroid and normal 41912f856554SMatthew G. Knepley - vol - The cell volume 41922f856554SMatthew G. Knepley 41932f856554SMatthew G. Knepley Level: developer 41942f856554SMatthew G. Knepley 41951cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexGetCellFields()` 41962f856554SMatthew G. Knepley @*/ 4197d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexGetFaceGeometry(DM dm, PetscInt fStart, PetscInt fEnd, Vec faceGeometry, Vec cellGeometry, PetscInt *Nface, PetscFVFaceGeom **fgeom, PetscReal **vol) 4198d71ae5a4SJacob Faibussowitsch { 41992f856554SMatthew G. Knepley DM dmFace, dmCell; 42002f856554SMatthew G. Knepley DMLabel ghostLabel; 42012f856554SMatthew G. Knepley const PetscScalar *facegeom, *cellgeom; 42022f856554SMatthew G. Knepley PetscInt dim, numFaces = fEnd - fStart, iface, face; 42032f856554SMatthew G. Knepley 42042f856554SMatthew G. Knepley PetscFunctionBegin; 42052f856554SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 42062f856554SMatthew G. Knepley PetscValidHeaderSpecific(faceGeometry, VEC_CLASSID, 4); 42072f856554SMatthew G. Knepley PetscValidHeaderSpecific(cellGeometry, VEC_CLASSID, 5); 42084f572ea9SToby Isaac PetscAssertPointer(fgeom, 7); 42094f572ea9SToby Isaac PetscAssertPointer(vol, 8); 42109566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 42119566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, "ghost", &ghostLabel)); 42129566063dSJacob Faibussowitsch PetscCall(VecGetDM(faceGeometry, &dmFace)); 42139566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(faceGeometry, &facegeom)); 42149566063dSJacob Faibussowitsch PetscCall(VecGetDM(cellGeometry, &dmCell)); 42159566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(cellGeometry, &cellgeom)); 42169566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(numFaces, fgeom)); 42179566063dSJacob Faibussowitsch PetscCall(DMGetWorkArray(dm, numFaces * 2, MPIU_SCALAR, vol)); 42182f856554SMatthew G. Knepley for (face = fStart, iface = 0; face < fEnd; ++face) { 42192f856554SMatthew G. Knepley const PetscInt *cells; 42202f856554SMatthew G. Knepley PetscFVFaceGeom *fg; 42212f856554SMatthew G. Knepley PetscFVCellGeom *cgL, *cgR; 42222f856554SMatthew G. Knepley PetscFVFaceGeom *fgeoml = *fgeom; 42232f856554SMatthew G. Knepley PetscReal *voll = *vol; 42242f856554SMatthew G. Knepley PetscInt ghost, d, nchild, nsupp; 42252f856554SMatthew G. Knepley 42269566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(ghostLabel, face, &ghost)); 42279566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dm, face, &nsupp)); 42289566063dSJacob Faibussowitsch PetscCall(DMPlexGetTreeChildren(dm, face, &nchild, NULL)); 42292f856554SMatthew G. Knepley if (ghost >= 0 || nsupp > 2 || nchild > 0) continue; 42309566063dSJacob Faibussowitsch PetscCall(DMPlexPointLocalRead(dmFace, face, facegeom, &fg)); 42319566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(dm, face, &cells)); 42329566063dSJacob Faibussowitsch PetscCall(DMPlexPointLocalRead(dmCell, cells[0], cellgeom, &cgL)); 42339566063dSJacob Faibussowitsch PetscCall(DMPlexPointLocalRead(dmCell, cells[1], cellgeom, &cgR)); 42342f856554SMatthew G. Knepley for (d = 0; d < dim; ++d) { 42352f856554SMatthew G. Knepley fgeoml[iface].centroid[d] = fg->centroid[d]; 42362f856554SMatthew G. Knepley fgeoml[iface].normal[d] = fg->normal[d]; 42372f856554SMatthew G. Knepley } 42382f856554SMatthew G. Knepley voll[iface * 2 + 0] = cgL->volume; 42392f856554SMatthew G. Knepley voll[iface * 2 + 1] = cgR->volume; 42402f856554SMatthew G. Knepley ++iface; 42412f856554SMatthew G. Knepley } 42422f856554SMatthew G. Knepley *Nface = iface; 42439566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(faceGeometry, &facegeom)); 42449566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(cellGeometry, &cellgeom)); 42453ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 42462f856554SMatthew G. Knepley } 42472f856554SMatthew G. Knepley 42482f856554SMatthew G. Knepley /*@C 42492f856554SMatthew G. Knepley DMPlexRestoreFaceGeometry - Restore the field values values for a chunk of faces 42502f856554SMatthew G. Knepley 42512f856554SMatthew G. Knepley Input Parameters: 4252a1cb98faSBarry Smith + dm - The `DM` 42532f856554SMatthew G. Knepley . fStart - The first face to include 42542f856554SMatthew G. Knepley . fEnd - The first face to exclude 42552f856554SMatthew G. Knepley . faceGeometry - A local vector with face geometry 42562f856554SMatthew G. Knepley - cellGeometry - A local vector with cell geometry 42572f856554SMatthew G. Knepley 42582f856554SMatthew G. Knepley Output Parameters: 42592f856554SMatthew G. Knepley + Nface - The number of faces with field values 42602f856554SMatthew G. Knepley . fgeom - The extract the face centroid and normal 42612f856554SMatthew G. Knepley - vol - The cell volume 42622f856554SMatthew G. Knepley 42632f856554SMatthew G. Knepley Level: developer 42642f856554SMatthew G. Knepley 42651cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexGetFaceFields()` 42662f856554SMatthew G. Knepley @*/ 4267d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexRestoreFaceGeometry(DM dm, PetscInt fStart, PetscInt fEnd, Vec faceGeometry, Vec cellGeometry, PetscInt *Nface, PetscFVFaceGeom **fgeom, PetscReal **vol) 4268d71ae5a4SJacob Faibussowitsch { 42692f856554SMatthew G. Knepley PetscFunctionBegin; 42709566063dSJacob Faibussowitsch PetscCall(PetscFree(*fgeom)); 42719566063dSJacob Faibussowitsch PetscCall(DMRestoreWorkArray(dm, 0, MPIU_REAL, vol)); 42723ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 42732f856554SMatthew G. Knepley } 42742f856554SMatthew G. Knepley 4275d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSNESGetFEGeom(DMField coordField, IS pointIS, PetscQuadrature quad, PetscBool faceData, PetscFEGeom **geom) 4276d71ae5a4SJacob Faibussowitsch { 4277a1cf66bbSMatthew G. Knepley char composeStr[33] = {0}; 4278a1cf66bbSMatthew G. Knepley PetscObjectId id; 4279a1cf66bbSMatthew G. Knepley PetscContainer container; 4280a1cf66bbSMatthew G. Knepley 4281a1cf66bbSMatthew G. Knepley PetscFunctionBegin; 42829566063dSJacob Faibussowitsch PetscCall(PetscObjectGetId((PetscObject)quad, &id)); 428363a3b9bcSJacob Faibussowitsch PetscCall(PetscSNPrintf(composeStr, 32, "DMSNESGetFEGeom_%" PetscInt64_FMT "\n", id)); 42849566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)pointIS, composeStr, (PetscObject *)&container)); 4285a1cf66bbSMatthew G. Knepley if (container) { 42869566063dSJacob Faibussowitsch PetscCall(PetscContainerGetPointer(container, (void **)geom)); 4287a1cf66bbSMatthew G. Knepley } else { 42889566063dSJacob Faibussowitsch PetscCall(DMFieldCreateFEGeom(coordField, pointIS, quad, faceData, geom)); 42899566063dSJacob Faibussowitsch PetscCall(PetscContainerCreate(PETSC_COMM_SELF, &container)); 42909566063dSJacob Faibussowitsch PetscCall(PetscContainerSetPointer(container, (void *)*geom)); 42919566063dSJacob Faibussowitsch PetscCall(PetscContainerSetUserDestroy(container, PetscContainerUserDestroy_PetscFEGeom)); 42929566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)pointIS, composeStr, (PetscObject)container)); 42939566063dSJacob Faibussowitsch PetscCall(PetscContainerDestroy(&container)); 4294a1cf66bbSMatthew G. Knepley } 42953ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4296a1cf66bbSMatthew G. Knepley } 4297a1cf66bbSMatthew G. Knepley 4298d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSNESRestoreFEGeom(DMField coordField, IS pointIS, PetscQuadrature quad, PetscBool faceData, PetscFEGeom **geom) 4299d71ae5a4SJacob Faibussowitsch { 4300a1cf66bbSMatthew G. Knepley PetscFunctionBegin; 4301a1cf66bbSMatthew G. Knepley *geom = NULL; 43023ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4303a1cf66bbSMatthew G. Knepley } 4304a1cf66bbSMatthew G. Knepley 4305d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeResidual_Patch_Internal(DM dm, PetscSection section, IS cellIS, PetscReal t, Vec locX, Vec locX_t, Vec locF, void *user) 4306d71ae5a4SJacob Faibussowitsch { 430792d50984SMatthew G. Knepley DM_Plex *mesh = (DM_Plex *)dm->data; 430892d50984SMatthew G. Knepley const char *name = "Residual"; 430992d50984SMatthew G. Knepley DM dmAux = NULL; 431092d50984SMatthew G. Knepley DMLabel ghostLabel = NULL; 431192d50984SMatthew G. Knepley PetscDS prob = NULL; 431292d50984SMatthew G. Knepley PetscDS probAux = NULL; 431392d50984SMatthew G. Knepley PetscBool useFEM = PETSC_FALSE; 431492d50984SMatthew G. Knepley PetscBool isImplicit = (locX_t || t == PETSC_MIN_REAL) ? PETSC_TRUE : PETSC_FALSE; 431592d50984SMatthew G. Knepley DMField coordField = NULL; 4316c0006e53SPatrick Farrell Vec locA; 4317c0006e53SPatrick Farrell PetscScalar *u = NULL, *u_t, *a, *uL = NULL, *uR = NULL; 431892d50984SMatthew G. Knepley IS chunkIS; 431992d50984SMatthew G. Knepley const PetscInt *cells; 432092d50984SMatthew G. Knepley PetscInt cStart, cEnd, numCells; 4321364207b6SKarl Rupp PetscInt Nf, f, totDim, totDimAux, numChunks, cellChunkSize, chunk, fStart, fEnd; 432292d50984SMatthew G. Knepley PetscInt maxDegree = PETSC_MAX_INT; 432306ad1575SMatthew G. Knepley PetscFormKey key; 432492d50984SMatthew G. Knepley PetscQuadrature affineQuad = NULL, *quads = NULL; 432592d50984SMatthew G. Knepley PetscFEGeom *affineGeom = NULL, **geoms = NULL; 432692d50984SMatthew G. Knepley 432792d50984SMatthew G. Knepley PetscFunctionBegin; 43289566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DMPLEX_ResidualFEM, dm, 0, 0, 0)); 432992d50984SMatthew G. Knepley /* FEM+FVM */ 433092d50984SMatthew G. Knepley /* 1: Get sizes from dm and dmAux */ 43319566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, "ghost", &ghostLabel)); 43329566063dSJacob Faibussowitsch PetscCall(DMGetDS(dm, &prob)); 43339566063dSJacob Faibussowitsch PetscCall(PetscDSGetNumFields(prob, &Nf)); 43349566063dSJacob Faibussowitsch PetscCall(PetscDSGetTotalDimension(prob, &totDim)); 43359566063dSJacob Faibussowitsch PetscCall(DMGetAuxiliaryVec(dm, NULL, 0, 0, &locA)); 433692d50984SMatthew G. Knepley if (locA) { 43379566063dSJacob Faibussowitsch PetscCall(VecGetDM(locA, &dmAux)); 43389566063dSJacob Faibussowitsch PetscCall(DMGetDS(dmAux, &probAux)); 43399566063dSJacob Faibussowitsch PetscCall(PetscDSGetTotalDimension(probAux, &totDimAux)); 434092d50984SMatthew G. Knepley } 434192d50984SMatthew G. Knepley /* 2: Get geometric data */ 434292d50984SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 434392d50984SMatthew G. Knepley PetscObject obj; 434492d50984SMatthew G. Knepley PetscClassId id; 434592d50984SMatthew G. Knepley PetscBool fimp; 434692d50984SMatthew G. Knepley 43479566063dSJacob Faibussowitsch PetscCall(PetscDSGetImplicit(prob, f, &fimp)); 434892d50984SMatthew G. Knepley if (isImplicit != fimp) continue; 43499566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(prob, f, &obj)); 43509566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 4351ad540459SPierre Jolivet if (id == PETSCFE_CLASSID) useFEM = PETSC_TRUE; 43525f80ce2aSJacob Faibussowitsch PetscCheck(id != PETSCFV_CLASSID, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Use of FVM with PCPATCH not yet implemented"); 435392d50984SMatthew G. Knepley } 435492d50984SMatthew G. Knepley if (useFEM) { 43559566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateField(dm, &coordField)); 43569566063dSJacob Faibussowitsch PetscCall(DMFieldGetDegree(coordField, cellIS, NULL, &maxDegree)); 435792d50984SMatthew G. Knepley if (maxDegree <= 1) { 43589566063dSJacob Faibussowitsch PetscCall(DMFieldCreateDefaultQuadrature(coordField, cellIS, &affineQuad)); 435948a46eb9SPierre Jolivet if (affineQuad) PetscCall(DMSNESGetFEGeom(coordField, cellIS, affineQuad, PETSC_FALSE, &affineGeom)); 436092d50984SMatthew G. Knepley } else { 43619566063dSJacob Faibussowitsch PetscCall(PetscCalloc2(Nf, &quads, Nf, &geoms)); 436292d50984SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 436392d50984SMatthew G. Knepley PetscObject obj; 436492d50984SMatthew G. Knepley PetscClassId id; 436592d50984SMatthew G. Knepley PetscBool fimp; 436692d50984SMatthew G. Knepley 43679566063dSJacob Faibussowitsch PetscCall(PetscDSGetImplicit(prob, f, &fimp)); 436892d50984SMatthew G. Knepley if (isImplicit != fimp) continue; 43699566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(prob, f, &obj)); 43709566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 437192d50984SMatthew G. Knepley if (id == PETSCFE_CLASSID) { 437292d50984SMatthew G. Knepley PetscFE fe = (PetscFE)obj; 437392d50984SMatthew G. Knepley 43749566063dSJacob Faibussowitsch PetscCall(PetscFEGetQuadrature(fe, &quads[f])); 43759566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)quads[f])); 43769566063dSJacob Faibussowitsch PetscCall(DMSNESGetFEGeom(coordField, cellIS, quads[f], PETSC_FALSE, &geoms[f])); 437792d50984SMatthew G. Knepley } 437892d50984SMatthew G. Knepley } 437992d50984SMatthew G. Knepley } 438092d50984SMatthew G. Knepley } 438192d50984SMatthew G. Knepley /* Loop over chunks */ 43829566063dSJacob Faibussowitsch PetscCall(ISGetPointRange(cellIS, &cStart, &cEnd, &cells)); 43839566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(dm, 1, &fStart, &fEnd)); 43849566063dSJacob Faibussowitsch if (useFEM) PetscCall(ISCreate(PETSC_COMM_SELF, &chunkIS)); 438592d50984SMatthew G. Knepley numCells = cEnd - cStart; 438692d50984SMatthew G. Knepley numChunks = 1; 438792d50984SMatthew G. Knepley cellChunkSize = numCells / numChunks; 438892d50984SMatthew G. Knepley numChunks = PetscMin(1, numCells); 43896528b96dSMatthew G. Knepley key.label = NULL; 43906528b96dSMatthew G. Knepley key.value = 0; 439106ad1575SMatthew G. Knepley key.part = 0; 439292d50984SMatthew G. Knepley for (chunk = 0; chunk < numChunks; ++chunk) { 4393c0006e53SPatrick Farrell PetscScalar *elemVec, *fluxL = NULL, *fluxR = NULL; 4394c0006e53SPatrick Farrell PetscReal *vol = NULL; 4395c0006e53SPatrick Farrell PetscFVFaceGeom *fgeom = NULL; 439692d50984SMatthew G. Knepley PetscInt cS = cStart + chunk * cellChunkSize, cE = PetscMin(cS + cellChunkSize, cEnd), numCells = cE - cS, c; 4397c0006e53SPatrick Farrell PetscInt numFaces = 0; 439892d50984SMatthew G. Knepley 439992d50984SMatthew G. Knepley /* Extract field coefficients */ 440092d50984SMatthew G. Knepley if (useFEM) { 44019566063dSJacob Faibussowitsch PetscCall(ISGetPointSubrange(chunkIS, cS, cE, cells)); 44029566063dSJacob Faibussowitsch PetscCall(DMPlexGetCellFields(dm, chunkIS, locX, locX_t, locA, &u, &u_t, &a)); 44039566063dSJacob Faibussowitsch PetscCall(DMGetWorkArray(dm, numCells * totDim, MPIU_SCALAR, &elemVec)); 44049566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(elemVec, numCells * totDim)); 440592d50984SMatthew G. Knepley } 440692d50984SMatthew G. Knepley /* TODO We will interlace both our field coefficients (u, u_t, uL, uR, etc.) and our output (elemVec, fL, fR). I think this works */ 440792d50984SMatthew G. Knepley /* Loop over fields */ 440892d50984SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 440992d50984SMatthew G. Knepley PetscObject obj; 441092d50984SMatthew G. Knepley PetscClassId id; 441192d50984SMatthew G. Knepley PetscBool fimp; 441292d50984SMatthew G. Knepley PetscInt numChunks, numBatches, batchSize, numBlocks, blockSize, Ne, Nr, offset; 441392d50984SMatthew G. Knepley 44146528b96dSMatthew G. Knepley key.field = f; 44159566063dSJacob Faibussowitsch PetscCall(PetscDSGetImplicit(prob, f, &fimp)); 441692d50984SMatthew G. Knepley if (isImplicit != fimp) continue; 44179566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(prob, f, &obj)); 44189566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 441992d50984SMatthew G. Knepley if (id == PETSCFE_CLASSID) { 442092d50984SMatthew G. Knepley PetscFE fe = (PetscFE)obj; 442192d50984SMatthew G. Knepley PetscFEGeom *geom = affineGeom ? affineGeom : geoms[f]; 442292d50984SMatthew G. Knepley PetscFEGeom *chunkGeom = NULL; 442392d50984SMatthew G. Knepley PetscQuadrature quad = affineQuad ? affineQuad : quads[f]; 442492d50984SMatthew G. Knepley PetscInt Nq, Nb; 442592d50984SMatthew G. Knepley 44269566063dSJacob Faibussowitsch PetscCall(PetscFEGetTileSizes(fe, NULL, &numBlocks, NULL, &numBatches)); 44279566063dSJacob Faibussowitsch PetscCall(PetscQuadratureGetData(quad, NULL, NULL, &Nq, NULL, NULL)); 44289566063dSJacob Faibussowitsch PetscCall(PetscFEGetDimension(fe, &Nb)); 442992d50984SMatthew G. Knepley blockSize = Nb; 443092d50984SMatthew G. Knepley batchSize = numBlocks * blockSize; 44319566063dSJacob Faibussowitsch PetscCall(PetscFESetTileSizes(fe, blockSize, numBlocks, batchSize, numBatches)); 443292d50984SMatthew G. Knepley numChunks = numCells / (numBatches * batchSize); 443392d50984SMatthew G. Knepley Ne = numChunks * numBatches * batchSize; 443492d50984SMatthew G. Knepley Nr = numCells % (numBatches * batchSize); 443592d50984SMatthew G. Knepley offset = numCells - Nr; 443692d50984SMatthew G. Knepley /* Integrate FE residual to get elemVec (need fields at quadrature points) */ 443792d50984SMatthew G. Knepley /* For FV, I think we use a P0 basis and the cell coefficients (for subdivided cells, we can tweak the basis tabulation to be the indicator function) */ 44389566063dSJacob Faibussowitsch PetscCall(PetscFEGeomGetChunk(geom, 0, offset, &chunkGeom)); 44399566063dSJacob Faibussowitsch PetscCall(PetscFEIntegrateResidual(prob, key, Ne, chunkGeom, u, u_t, probAux, a, t, elemVec)); 44409566063dSJacob Faibussowitsch PetscCall(PetscFEGeomGetChunk(geom, offset, numCells, &chunkGeom)); 44418e3a54c0SPierre Jolivet PetscCall(PetscFEIntegrateResidual(prob, key, Nr, chunkGeom, &u[offset * totDim], PetscSafePointerPlusOffset(u_t, offset * totDim), probAux, &a[offset * totDimAux], t, &elemVec[offset * totDim])); 44429566063dSJacob Faibussowitsch PetscCall(PetscFEGeomRestoreChunk(geom, offset, numCells, &chunkGeom)); 444392d50984SMatthew G. Knepley } else if (id == PETSCFV_CLASSID) { 444492d50984SMatthew G. Knepley PetscFV fv = (PetscFV)obj; 444592d50984SMatthew G. Knepley 444692d50984SMatthew G. Knepley Ne = numFaces; 444792d50984SMatthew G. Knepley /* Riemann solve over faces (need fields at face centroids) */ 444892d50984SMatthew G. Knepley /* We need to evaluate FE fields at those coordinates */ 44499566063dSJacob Faibussowitsch PetscCall(PetscFVIntegrateRHSFunction(fv, prob, f, Ne, fgeom, vol, uL, uR, fluxL, fluxR)); 445063a3b9bcSJacob Faibussowitsch } else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, f); 445192d50984SMatthew G. Knepley } 445292d50984SMatthew G. Knepley /* Loop over domain */ 445392d50984SMatthew G. Knepley if (useFEM) { 445492d50984SMatthew G. Knepley /* Add elemVec to locX */ 445592d50984SMatthew G. Knepley for (c = cS; c < cE; ++c) { 445692d50984SMatthew G. Knepley const PetscInt cell = cells ? cells[c] : c; 445792d50984SMatthew G. Knepley const PetscInt cind = c - cStart; 445892d50984SMatthew G. Knepley 44599566063dSJacob Faibussowitsch if (mesh->printFEM > 1) PetscCall(DMPrintCellVector(cell, name, totDim, &elemVec[cind * totDim])); 446092d50984SMatthew G. Knepley if (ghostLabel) { 446192d50984SMatthew G. Knepley PetscInt ghostVal; 446292d50984SMatthew G. Knepley 44639566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(ghostLabel, cell, &ghostVal)); 446492d50984SMatthew G. Knepley if (ghostVal > 0) continue; 446592d50984SMatthew G. Knepley } 44669566063dSJacob Faibussowitsch PetscCall(DMPlexVecSetClosure(dm, section, locF, cell, &elemVec[cind * totDim], ADD_ALL_VALUES)); 446792d50984SMatthew G. Knepley } 446892d50984SMatthew G. Knepley } 446992d50984SMatthew G. Knepley /* Handle time derivative */ 447092d50984SMatthew G. Knepley if (locX_t) { 447192d50984SMatthew G. Knepley PetscScalar *x_t, *fa; 447292d50984SMatthew G. Knepley 44739566063dSJacob Faibussowitsch PetscCall(VecGetArray(locF, &fa)); 44749566063dSJacob Faibussowitsch PetscCall(VecGetArray(locX_t, &x_t)); 447592d50984SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 447692d50984SMatthew G. Knepley PetscFV fv; 447792d50984SMatthew G. Knepley PetscObject obj; 447892d50984SMatthew G. Knepley PetscClassId id; 447992d50984SMatthew G. Knepley PetscInt pdim, d; 448092d50984SMatthew G. Knepley 44819566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(prob, f, &obj)); 44829566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 448392d50984SMatthew G. Knepley if (id != PETSCFV_CLASSID) continue; 448492d50984SMatthew G. Knepley fv = (PetscFV)obj; 44859566063dSJacob Faibussowitsch PetscCall(PetscFVGetNumComponents(fv, &pdim)); 448692d50984SMatthew G. Knepley for (c = cS; c < cE; ++c) { 448792d50984SMatthew G. Knepley const PetscInt cell = cells ? cells[c] : c; 448892d50984SMatthew G. Knepley PetscScalar *u_t, *r; 448992d50984SMatthew G. Knepley 449092d50984SMatthew G. Knepley if (ghostLabel) { 449192d50984SMatthew G. Knepley PetscInt ghostVal; 449292d50984SMatthew G. Knepley 44939566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(ghostLabel, cell, &ghostVal)); 449492d50984SMatthew G. Knepley if (ghostVal > 0) continue; 449592d50984SMatthew G. Knepley } 44969566063dSJacob Faibussowitsch PetscCall(DMPlexPointLocalFieldRead(dm, cell, f, x_t, &u_t)); 44979566063dSJacob Faibussowitsch PetscCall(DMPlexPointLocalFieldRef(dm, cell, f, fa, &r)); 449892d50984SMatthew G. Knepley for (d = 0; d < pdim; ++d) r[d] += u_t[d]; 449992d50984SMatthew G. Knepley } 450092d50984SMatthew G. Knepley } 45019566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(locX_t, &x_t)); 45029566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(locF, &fa)); 450392d50984SMatthew G. Knepley } 450492d50984SMatthew G. Knepley if (useFEM) { 45059566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreCellFields(dm, chunkIS, locX, locX_t, locA, &u, &u_t, &a)); 45069566063dSJacob Faibussowitsch PetscCall(DMRestoreWorkArray(dm, numCells * totDim, MPIU_SCALAR, &elemVec)); 450792d50984SMatthew G. Knepley } 450892d50984SMatthew G. Knepley } 45099566063dSJacob Faibussowitsch if (useFEM) PetscCall(ISDestroy(&chunkIS)); 45109566063dSJacob Faibussowitsch PetscCall(ISRestorePointRange(cellIS, &cStart, &cEnd, &cells)); 451192d50984SMatthew G. Knepley /* TODO Could include boundary residual here (see DMPlexComputeResidual_Internal) */ 451292d50984SMatthew G. Knepley if (useFEM) { 451392d50984SMatthew G. Knepley if (maxDegree <= 1) { 45149566063dSJacob Faibussowitsch PetscCall(DMSNESRestoreFEGeom(coordField, cellIS, affineQuad, PETSC_FALSE, &affineGeom)); 45159566063dSJacob Faibussowitsch PetscCall(PetscQuadratureDestroy(&affineQuad)); 451692d50984SMatthew G. Knepley } else { 451792d50984SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 45189566063dSJacob Faibussowitsch PetscCall(DMSNESRestoreFEGeom(coordField, cellIS, quads[f], PETSC_FALSE, &geoms[f])); 45199566063dSJacob Faibussowitsch PetscCall(PetscQuadratureDestroy(&quads[f])); 452092d50984SMatthew G. Knepley } 45219566063dSJacob Faibussowitsch PetscCall(PetscFree2(quads, geoms)); 452292d50984SMatthew G. Knepley } 452392d50984SMatthew G. Knepley } 45249566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DMPLEX_ResidualFEM, dm, 0, 0, 0)); 45253ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 452692d50984SMatthew G. Knepley } 452792d50984SMatthew G. Knepley 4528a1cf66bbSMatthew G. Knepley /* 4529a1cf66bbSMatthew G. Knepley We always assemble JacP, and if the matrix is different from Jac and two different sets of point functions are provided, we also assemble Jac 4530a1cf66bbSMatthew G. Knepley 4531a1cf66bbSMatthew G. Knepley X - The local solution vector 4532a5b23f4aSJose E. Roman X_t - The local solution time derivative vector, or NULL 4533a1cf66bbSMatthew G. Knepley */ 4534d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeJacobian_Patch_Internal(DM dm, PetscSection section, PetscSection globalSection, IS cellIS, PetscReal t, PetscReal X_tShift, Vec X, Vec X_t, Mat Jac, Mat JacP, void *ctx) 4535d71ae5a4SJacob Faibussowitsch { 4536a1cf66bbSMatthew G. Knepley DM_Plex *mesh = (DM_Plex *)dm->data; 4537a1cf66bbSMatthew G. Knepley const char *name = "Jacobian", *nameP = "JacobianPre"; 4538a1cf66bbSMatthew G. Knepley DM dmAux = NULL; 4539a1cf66bbSMatthew G. Knepley PetscDS prob, probAux = NULL; 4540a1cf66bbSMatthew G. Knepley PetscSection sectionAux = NULL; 4541a1cf66bbSMatthew G. Knepley Vec A; 4542a1cf66bbSMatthew G. Knepley DMField coordField; 4543a1cf66bbSMatthew G. Knepley PetscFEGeom *cgeomFEM; 4544a1cf66bbSMatthew G. Knepley PetscQuadrature qGeom = NULL; 4545a1cf66bbSMatthew G. Knepley Mat J = Jac, JP = JacP; 4546a1cf66bbSMatthew G. Knepley PetscScalar *work, *u = NULL, *u_t = NULL, *a = NULL, *elemMat = NULL, *elemMatP = NULL, *elemMatD = NULL; 4547e432b41dSStefano Zampini PetscBool hasJac, hasPrec, hasDyn, assembleJac, *isFE, hasFV = PETSC_FALSE; 4548a1cf66bbSMatthew G. Knepley const PetscInt *cells; 454906ad1575SMatthew G. Knepley PetscFormKey key; 45509b2fc754SMatthew G. Knepley PetscInt Nf, fieldI, fieldJ, maxDegree, numCells, cStart, cEnd, numChunks, chunkSize, chunk, totDim, totDimAux = 0, sz, wsz, off = 0, offCell = 0; 4551a1cf66bbSMatthew G. Knepley 4552a1cf66bbSMatthew G. Knepley PetscFunctionBegin; 45539566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(cellIS, &numCells)); 45549566063dSJacob Faibussowitsch PetscCall(ISGetPointRange(cellIS, &cStart, &cEnd, &cells)); 45559566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DMPLEX_JacobianFEM, dm, 0, 0, 0)); 45569566063dSJacob Faibussowitsch PetscCall(DMGetDS(dm, &prob)); 45579566063dSJacob Faibussowitsch PetscCall(DMGetAuxiliaryVec(dm, NULL, 0, 0, &A)); 45589a2a23afSMatthew G. Knepley if (A) { 45599566063dSJacob Faibussowitsch PetscCall(VecGetDM(A, &dmAux)); 45609566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dmAux, §ionAux)); 45619566063dSJacob Faibussowitsch PetscCall(DMGetDS(dmAux, &probAux)); 4562a1cf66bbSMatthew G. Knepley } 4563a1cf66bbSMatthew G. Knepley /* Get flags */ 45649566063dSJacob Faibussowitsch PetscCall(PetscDSGetNumFields(prob, &Nf)); 45659566063dSJacob Faibussowitsch PetscCall(DMGetWorkArray(dm, Nf, MPIU_BOOL, &isFE)); 4566a1cf66bbSMatthew G. Knepley for (fieldI = 0; fieldI < Nf; ++fieldI) { 4567a1cf66bbSMatthew G. Knepley PetscObject disc; 4568a1cf66bbSMatthew G. Knepley PetscClassId id; 45699566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(prob, fieldI, &disc)); 45709566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(disc, &id)); 45719371c9d4SSatish Balay if (id == PETSCFE_CLASSID) { 45729371c9d4SSatish Balay isFE[fieldI] = PETSC_TRUE; 45739371c9d4SSatish Balay } else if (id == PETSCFV_CLASSID) { 45749371c9d4SSatish Balay hasFV = PETSC_TRUE; 45759371c9d4SSatish Balay isFE[fieldI] = PETSC_FALSE; 45769371c9d4SSatish Balay } 4577a1cf66bbSMatthew G. Knepley } 45789566063dSJacob Faibussowitsch PetscCall(PetscDSHasJacobian(prob, &hasJac)); 45799566063dSJacob Faibussowitsch PetscCall(PetscDSHasJacobianPreconditioner(prob, &hasPrec)); 45809566063dSJacob Faibussowitsch PetscCall(PetscDSHasDynamicJacobian(prob, &hasDyn)); 4581a1cf66bbSMatthew G. Knepley assembleJac = hasJac && hasPrec && (Jac != JacP) ? PETSC_TRUE : PETSC_FALSE; 4582a1cf66bbSMatthew G. Knepley hasDyn = hasDyn && (X_tShift != 0.0) ? PETSC_TRUE : PETSC_FALSE; 45839566063dSJacob Faibussowitsch if (hasFV) PetscCall(MatSetOption(JP, MAT_IGNORE_ZERO_ENTRIES, PETSC_TRUE)); /* No allocated space for FV stuff, so ignore the zero entries */ 45849566063dSJacob Faibussowitsch PetscCall(PetscDSGetTotalDimension(prob, &totDim)); 45859566063dSJacob Faibussowitsch if (probAux) PetscCall(PetscDSGetTotalDimension(probAux, &totDimAux)); 4586a1cf66bbSMatthew G. Knepley /* Compute batch sizes */ 4587a1cf66bbSMatthew G. Knepley if (isFE[0]) { 4588a1cf66bbSMatthew G. Knepley PetscFE fe; 4589a1cf66bbSMatthew G. Knepley PetscQuadrature q; 4590a1cf66bbSMatthew G. Knepley PetscInt numQuadPoints, numBatches, batchSize, numBlocks, blockSize, Nb; 4591a1cf66bbSMatthew G. Knepley 45929566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(prob, 0, (PetscObject *)&fe)); 45939566063dSJacob Faibussowitsch PetscCall(PetscFEGetQuadrature(fe, &q)); 45949566063dSJacob Faibussowitsch PetscCall(PetscQuadratureGetData(q, NULL, NULL, &numQuadPoints, NULL, NULL)); 45959566063dSJacob Faibussowitsch PetscCall(PetscFEGetDimension(fe, &Nb)); 45969566063dSJacob Faibussowitsch PetscCall(PetscFEGetTileSizes(fe, NULL, &numBlocks, NULL, &numBatches)); 4597a1cf66bbSMatthew G. Knepley blockSize = Nb * numQuadPoints; 4598a1cf66bbSMatthew G. Knepley batchSize = numBlocks * blockSize; 4599a1cf66bbSMatthew G. Knepley chunkSize = numBatches * batchSize; 4600a1cf66bbSMatthew G. Knepley numChunks = numCells / chunkSize + numCells % chunkSize; 46019566063dSJacob Faibussowitsch PetscCall(PetscFESetTileSizes(fe, blockSize, numBlocks, batchSize, numBatches)); 4602a1cf66bbSMatthew G. Knepley } else { 4603a1cf66bbSMatthew G. Knepley chunkSize = numCells; 4604a1cf66bbSMatthew G. Knepley numChunks = 1; 4605a1cf66bbSMatthew G. Knepley } 4606a1cf66bbSMatthew G. Knepley /* Get work space */ 4607a1cf66bbSMatthew G. Knepley wsz = (((X ? 1 : 0) + (X_t ? 1 : 0) + (dmAux ? 1 : 0)) * totDim + ((hasJac ? 1 : 0) + (hasPrec ? 1 : 0) + (hasDyn ? 1 : 0)) * totDim * totDim) * chunkSize; 46089566063dSJacob Faibussowitsch PetscCall(DMGetWorkArray(dm, wsz, MPIU_SCALAR, &work)); 46099566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(work, wsz)); 4610a1cf66bbSMatthew G. Knepley off = 0; 4611a1cf66bbSMatthew G. Knepley u = X ? (sz = chunkSize * totDim, off += sz, work + off - sz) : NULL; 4612a1cf66bbSMatthew G. Knepley u_t = X_t ? (sz = chunkSize * totDim, off += sz, work + off - sz) : NULL; 4613a1cf66bbSMatthew G. Knepley a = dmAux ? (sz = chunkSize * totDimAux, off += sz, work + off - sz) : NULL; 4614a1cf66bbSMatthew G. Knepley elemMat = hasJac ? (sz = chunkSize * totDim * totDim, off += sz, work + off - sz) : NULL; 4615a1cf66bbSMatthew G. Knepley elemMatP = hasPrec ? (sz = chunkSize * totDim * totDim, off += sz, work + off - sz) : NULL; 4616a1cf66bbSMatthew G. Knepley elemMatD = hasDyn ? (sz = chunkSize * totDim * totDim, off += sz, work + off - sz) : NULL; 461763a3b9bcSJacob Faibussowitsch PetscCheck(off == wsz, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Error is workspace size %" PetscInt_FMT " should be %" PetscInt_FMT, off, wsz); 4618a1cf66bbSMatthew G. Knepley /* Setup geometry */ 46199566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateField(dm, &coordField)); 46209566063dSJacob Faibussowitsch PetscCall(DMFieldGetDegree(coordField, cellIS, NULL, &maxDegree)); 46219566063dSJacob Faibussowitsch if (maxDegree <= 1) PetscCall(DMFieldCreateDefaultQuadrature(coordField, cellIS, &qGeom)); 4622a1cf66bbSMatthew G. Knepley if (!qGeom) { 4623a1cf66bbSMatthew G. Knepley PetscFE fe; 4624a1cf66bbSMatthew G. Knepley 46259566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(prob, 0, (PetscObject *)&fe)); 46269566063dSJacob Faibussowitsch PetscCall(PetscFEGetQuadrature(fe, &qGeom)); 46279566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)qGeom)); 4628a1cf66bbSMatthew G. Knepley } 46299566063dSJacob Faibussowitsch PetscCall(DMSNESGetFEGeom(coordField, cellIS, qGeom, PETSC_FALSE, &cgeomFEM)); 4630a1cf66bbSMatthew G. Knepley /* Compute volume integrals */ 46319566063dSJacob Faibussowitsch if (assembleJac) PetscCall(MatZeroEntries(J)); 46329566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(JP)); 46336528b96dSMatthew G. Knepley key.label = NULL; 46346528b96dSMatthew G. Knepley key.value = 0; 463506ad1575SMatthew G. Knepley key.part = 0; 4636a1cf66bbSMatthew G. Knepley for (chunk = 0; chunk < numChunks; ++chunk, offCell += chunkSize) { 4637a1cf66bbSMatthew G. Knepley const PetscInt Ncell = PetscMin(chunkSize, numCells - offCell); 4638a1cf66bbSMatthew G. Knepley PetscInt c; 4639a1cf66bbSMatthew G. Knepley 4640a1cf66bbSMatthew G. Knepley /* Extract values */ 4641a1cf66bbSMatthew G. Knepley for (c = 0; c < Ncell; ++c) { 4642a1cf66bbSMatthew G. Knepley const PetscInt cell = cells ? cells[c + offCell] : c + offCell; 4643a1cf66bbSMatthew G. Knepley PetscScalar *x = NULL, *x_t = NULL; 4644a1cf66bbSMatthew G. Knepley PetscInt i; 4645a1cf66bbSMatthew G. Knepley 4646a1cf66bbSMatthew G. Knepley if (X) { 46479566063dSJacob Faibussowitsch PetscCall(DMPlexVecGetClosure(dm, section, X, cell, NULL, &x)); 4648a1cf66bbSMatthew G. Knepley for (i = 0; i < totDim; ++i) u[c * totDim + i] = x[i]; 46499566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(dm, section, X, cell, NULL, &x)); 4650a1cf66bbSMatthew G. Knepley } 4651a1cf66bbSMatthew G. Knepley if (X_t) { 46529566063dSJacob Faibussowitsch PetscCall(DMPlexVecGetClosure(dm, section, X_t, cell, NULL, &x_t)); 4653a1cf66bbSMatthew G. Knepley for (i = 0; i < totDim; ++i) u_t[c * totDim + i] = x_t[i]; 46549566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(dm, section, X_t, cell, NULL, &x_t)); 4655a1cf66bbSMatthew G. Knepley } 4656a1cf66bbSMatthew G. Knepley if (dmAux) { 46579566063dSJacob Faibussowitsch PetscCall(DMPlexVecGetClosure(dmAux, sectionAux, A, cell, NULL, &x)); 4658a1cf66bbSMatthew G. Knepley for (i = 0; i < totDimAux; ++i) a[c * totDimAux + i] = x[i]; 46599566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(dmAux, sectionAux, A, cell, NULL, &x)); 4660a1cf66bbSMatthew G. Knepley } 4661a1cf66bbSMatthew G. Knepley } 4662a1cf66bbSMatthew G. Knepley for (fieldI = 0; fieldI < Nf; ++fieldI) { 4663a1cf66bbSMatthew G. Knepley PetscFE fe; 46649566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(prob, fieldI, (PetscObject *)&fe)); 4665a1cf66bbSMatthew G. Knepley for (fieldJ = 0; fieldJ < Nf; ++fieldJ) { 46666528b96dSMatthew G. Knepley key.field = fieldI * Nf + fieldJ; 46679566063dSJacob Faibussowitsch if (hasJac) PetscCall(PetscFEIntegrateJacobian(prob, PETSCFE_JACOBIAN, key, Ncell, cgeomFEM, u, u_t, probAux, a, t, X_tShift, elemMat)); 46689566063dSJacob Faibussowitsch if (hasPrec) PetscCall(PetscFEIntegrateJacobian(prob, PETSCFE_JACOBIAN_PRE, key, Ncell, cgeomFEM, u, u_t, probAux, a, t, X_tShift, elemMatP)); 46699566063dSJacob Faibussowitsch if (hasDyn) PetscCall(PetscFEIntegrateJacobian(prob, PETSCFE_JACOBIAN_DYN, key, Ncell, cgeomFEM, u, u_t, probAux, a, t, X_tShift, elemMatD)); 4670a1cf66bbSMatthew G. Knepley } 4671a1cf66bbSMatthew G. Knepley /* For finite volume, add the identity */ 4672a1cf66bbSMatthew G. Knepley if (!isFE[fieldI]) { 4673a1cf66bbSMatthew G. Knepley PetscFV fv; 4674a1cf66bbSMatthew G. Knepley PetscInt eOffset = 0, Nc, fc, foff; 4675a1cf66bbSMatthew G. Knepley 46769566063dSJacob Faibussowitsch PetscCall(PetscDSGetFieldOffset(prob, fieldI, &foff)); 46779566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(prob, fieldI, (PetscObject *)&fv)); 46789566063dSJacob Faibussowitsch PetscCall(PetscFVGetNumComponents(fv, &Nc)); 4679a1cf66bbSMatthew G. Knepley for (c = 0; c < chunkSize; ++c, eOffset += totDim * totDim) { 4680a1cf66bbSMatthew G. Knepley for (fc = 0; fc < Nc; ++fc) { 4681a1cf66bbSMatthew G. Knepley const PetscInt i = foff + fc; 4682ad540459SPierre Jolivet if (hasJac) elemMat[eOffset + i * totDim + i] = 1.0; 4683ad540459SPierre Jolivet if (hasPrec) elemMatP[eOffset + i * totDim + i] = 1.0; 4684a1cf66bbSMatthew G. Knepley } 4685a1cf66bbSMatthew G. Knepley } 4686a1cf66bbSMatthew G. Knepley } 4687a1cf66bbSMatthew G. Knepley } 4688a1cf66bbSMatthew G. Knepley /* Add contribution from X_t */ 46899371c9d4SSatish Balay if (hasDyn) { 46909371c9d4SSatish Balay for (c = 0; c < chunkSize * totDim * totDim; ++c) elemMat[c] += X_tShift * elemMatD[c]; 46919371c9d4SSatish Balay } 4692a1cf66bbSMatthew G. Knepley /* Insert values into matrix */ 4693a1cf66bbSMatthew G. Knepley for (c = 0; c < Ncell; ++c) { 4694a1cf66bbSMatthew G. Knepley const PetscInt cell = cells ? cells[c + offCell] : c + offCell; 4695a1cf66bbSMatthew G. Knepley if (mesh->printFEM > 1) { 46969566063dSJacob Faibussowitsch if (hasJac) PetscCall(DMPrintCellMatrix(cell, name, totDim, totDim, &elemMat[(c - cStart) * totDim * totDim])); 46979566063dSJacob Faibussowitsch if (hasPrec) PetscCall(DMPrintCellMatrix(cell, nameP, totDim, totDim, &elemMatP[(c - cStart) * totDim * totDim])); 4698a1cf66bbSMatthew G. Knepley } 4699e8e188d2SZach Atkins if (assembleJac) PetscCall(DMPlexMatSetClosure_Internal(dm, section, globalSection, mesh->useMatClPerm, Jac, cell, &elemMat[(c - cStart) * totDim * totDim], ADD_VALUES)); 4700e8e188d2SZach Atkins PetscCall(DMPlexMatSetClosure_Internal(dm, section, globalSection, mesh->useMatClPerm, JP, cell, &elemMat[(c - cStart) * totDim * totDim], ADD_VALUES)); 4701a1cf66bbSMatthew G. Knepley } 4702a1cf66bbSMatthew G. Knepley } 4703a1cf66bbSMatthew G. Knepley /* Cleanup */ 47049566063dSJacob Faibussowitsch PetscCall(DMSNESRestoreFEGeom(coordField, cellIS, qGeom, PETSC_FALSE, &cgeomFEM)); 47059566063dSJacob Faibussowitsch PetscCall(PetscQuadratureDestroy(&qGeom)); 47069566063dSJacob Faibussowitsch if (hasFV) PetscCall(MatSetOption(JacP, MAT_IGNORE_ZERO_ENTRIES, PETSC_FALSE)); 47079566063dSJacob Faibussowitsch PetscCall(DMRestoreWorkArray(dm, Nf, MPIU_BOOL, &isFE)); 47089566063dSJacob Faibussowitsch PetscCall(DMRestoreWorkArray(dm, ((1 + (X_t ? 1 : 0) + (dmAux ? 1 : 0)) * totDim + ((hasJac ? 1 : 0) + (hasPrec ? 1 : 0) + (hasDyn ? 1 : 0)) * totDim * totDim) * chunkSize, MPIU_SCALAR, &work)); 4709a1cf66bbSMatthew G. Knepley /* Compute boundary integrals */ 47109566063dSJacob Faibussowitsch /* PetscCall(DMPlexComputeBdJacobian_Internal(dm, X, X_t, t, X_tShift, Jac, JacP, ctx)); */ 4711a1cf66bbSMatthew G. Knepley /* Assemble matrix */ 47129371c9d4SSatish Balay if (assembleJac) { 47139371c9d4SSatish Balay PetscCall(MatAssemblyBegin(Jac, MAT_FINAL_ASSEMBLY)); 47149371c9d4SSatish Balay PetscCall(MatAssemblyEnd(Jac, MAT_FINAL_ASSEMBLY)); 47159371c9d4SSatish Balay } 47169371c9d4SSatish Balay PetscCall(MatAssemblyBegin(JacP, MAT_FINAL_ASSEMBLY)); 47179371c9d4SSatish Balay PetscCall(MatAssemblyEnd(JacP, MAT_FINAL_ASSEMBLY)); 47189566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DMPLEX_JacobianFEM, dm, 0, 0, 0)); 47193ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4720a1cf66bbSMatthew G. Knepley } 47213e9753d6SMatthew G. Knepley 47223e9753d6SMatthew G. Knepley /******** FEM Assembly Function ********/ 47233e9753d6SMatthew G. Knepley 4724d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMConvertPlex_Internal(DM dm, DM *plex, PetscBool copy) 4725d71ae5a4SJacob Faibussowitsch { 47263e9753d6SMatthew G. Knepley PetscBool isPlex; 47273e9753d6SMatthew G. Knepley 47283e9753d6SMatthew G. Knepley PetscFunctionBegin; 47299566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)dm, DMPLEX, &isPlex)); 47303e9753d6SMatthew G. Knepley if (isPlex) { 47313e9753d6SMatthew G. Knepley *plex = dm; 47329566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)dm)); 47333e9753d6SMatthew G. Knepley } else { 47349566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)dm, "dm_plex", (PetscObject *)plex)); 47353e9753d6SMatthew G. Knepley if (!*plex) { 47369566063dSJacob Faibussowitsch PetscCall(DMConvert(dm, DMPLEX, plex)); 47379566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)dm, "dm_plex", (PetscObject)*plex)); 47383e9753d6SMatthew G. Knepley } else { 47399566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)*plex)); 47403e9753d6SMatthew G. Knepley } 4741cbf8eb3cSStefano Zampini if (copy) PetscCall(DMCopyAuxiliaryVec(dm, *plex)); 47423e9753d6SMatthew G. Knepley } 47433ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 47443e9753d6SMatthew G. Knepley } 47453e9753d6SMatthew G. Knepley 47463e9753d6SMatthew G. Knepley /*@ 47473e9753d6SMatthew G. Knepley DMPlexGetGeometryFVM - Return precomputed geometric data 47483e9753d6SMatthew G. Knepley 474920f4b53cSBarry Smith Collective 47503e9753d6SMatthew G. Knepley 47513e9753d6SMatthew G. Knepley Input Parameter: 4752a1cb98faSBarry Smith . dm - The `DM` 47533e9753d6SMatthew G. Knepley 47543e9753d6SMatthew G. Knepley Output Parameters: 47553e9753d6SMatthew G. Knepley + facegeom - The values precomputed from face geometry 47563e9753d6SMatthew G. Knepley . cellgeom - The values precomputed from cell geometry 47573e9753d6SMatthew G. Knepley - minRadius - The minimum radius over the mesh of an inscribed sphere in a cell 47583e9753d6SMatthew G. Knepley 47593e9753d6SMatthew G. Knepley Level: developer 47603e9753d6SMatthew G. Knepley 47611cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMTSSetRHSFunctionLocal()` 47623e9753d6SMatthew G. Knepley @*/ 4763d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexGetGeometryFVM(DM dm, Vec *facegeom, Vec *cellgeom, PetscReal *minRadius) 4764d71ae5a4SJacob Faibussowitsch { 47653e9753d6SMatthew G. Knepley DM plex; 47663e9753d6SMatthew G. Knepley 47673e9753d6SMatthew G. Knepley PetscFunctionBegin; 47683e9753d6SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 47699566063dSJacob Faibussowitsch PetscCall(DMConvertPlex_Internal(dm, &plex, PETSC_TRUE)); 47709566063dSJacob Faibussowitsch PetscCall(DMPlexGetDataFVM(plex, NULL, cellgeom, facegeom, NULL)); 47719566063dSJacob Faibussowitsch if (minRadius) PetscCall(DMPlexGetMinRadius(plex, minRadius)); 47729566063dSJacob Faibussowitsch PetscCall(DMDestroy(&plex)); 47733ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 47743e9753d6SMatthew G. Knepley } 47753e9753d6SMatthew G. Knepley 47763e9753d6SMatthew G. Knepley /*@ 47773e9753d6SMatthew G. Knepley DMPlexGetGradientDM - Return gradient data layout 47783e9753d6SMatthew G. Knepley 477920f4b53cSBarry Smith Collective 47803e9753d6SMatthew G. Knepley 47813e9753d6SMatthew G. Knepley Input Parameters: 4782a1cb98faSBarry Smith + dm - The `DM` 478320f4b53cSBarry Smith - fv - The `PetscFV` 47843e9753d6SMatthew G. Knepley 47853e9753d6SMatthew G. Knepley Output Parameter: 47863e9753d6SMatthew G. Knepley . dmGrad - The layout for gradient values 47873e9753d6SMatthew G. Knepley 47883e9753d6SMatthew G. Knepley Level: developer 47893e9753d6SMatthew G. Knepley 47901cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexGetGeometryFVM()` 47913e9753d6SMatthew G. Knepley @*/ 4792d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexGetGradientDM(DM dm, PetscFV fv, DM *dmGrad) 4793d71ae5a4SJacob Faibussowitsch { 47943e9753d6SMatthew G. Knepley DM plex; 47953e9753d6SMatthew G. Knepley PetscBool computeGradients; 47963e9753d6SMatthew G. Knepley 47973e9753d6SMatthew G. Knepley PetscFunctionBegin; 47983e9753d6SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 47993e9753d6SMatthew G. Knepley PetscValidHeaderSpecific(fv, PETSCFV_CLASSID, 2); 48004f572ea9SToby Isaac PetscAssertPointer(dmGrad, 3); 48019566063dSJacob Faibussowitsch PetscCall(PetscFVGetComputeGradients(fv, &computeGradients)); 48029371c9d4SSatish Balay if (!computeGradients) { 48039371c9d4SSatish Balay *dmGrad = NULL; 48043ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 48059371c9d4SSatish Balay } 48069566063dSJacob Faibussowitsch PetscCall(DMConvertPlex_Internal(dm, &plex, PETSC_TRUE)); 48079566063dSJacob Faibussowitsch PetscCall(DMPlexGetDataFVM(plex, fv, NULL, NULL, dmGrad)); 48089566063dSJacob Faibussowitsch PetscCall(DMDestroy(&plex)); 48093ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 48103e9753d6SMatthew G. Knepley } 48113e9753d6SMatthew G. Knepley 4812d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexComputeBdResidual_Single_Internal(DM dm, PetscReal t, PetscWeakForm wf, PetscFormKey key, Vec locX, Vec locX_t, Vec locF, DMField coordField, IS facetIS) 4813d71ae5a4SJacob Faibussowitsch { 48143e9753d6SMatthew G. Knepley DM_Plex *mesh = (DM_Plex *)dm->data; 48153e9753d6SMatthew G. Knepley DM plex = NULL, plexA = NULL; 4816673019faSMatthew G. Knepley const char *name = "BdResidual"; 48173e9753d6SMatthew G. Knepley DMEnclosureType encAux; 48183e9753d6SMatthew G. Knepley PetscDS prob, probAux = NULL; 48193e9753d6SMatthew G. Knepley PetscSection section, sectionAux = NULL; 48203e9753d6SMatthew G. Knepley Vec locA = NULL; 48213e9753d6SMatthew G. Knepley PetscScalar *u = NULL, *u_t = NULL, *a = NULL, *elemVec = NULL; 48223e9753d6SMatthew G. Knepley PetscInt totDim, totDimAux = 0; 48233e9753d6SMatthew G. Knepley 48243e9753d6SMatthew G. Knepley PetscFunctionBegin; 48259566063dSJacob Faibussowitsch PetscCall(DMConvert(dm, DMPLEX, &plex)); 48269566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, §ion)); 48279566063dSJacob Faibussowitsch PetscCall(DMGetDS(dm, &prob)); 48289566063dSJacob Faibussowitsch PetscCall(PetscDSGetTotalDimension(prob, &totDim)); 48299566063dSJacob Faibussowitsch PetscCall(DMGetAuxiliaryVec(dm, key.label, key.value, key.part, &locA)); 48303e9753d6SMatthew G. Knepley if (locA) { 48313e9753d6SMatthew G. Knepley DM dmAux; 48323e9753d6SMatthew G. Knepley 48339566063dSJacob Faibussowitsch PetscCall(VecGetDM(locA, &dmAux)); 48349566063dSJacob Faibussowitsch PetscCall(DMGetEnclosureRelation(dmAux, dm, &encAux)); 48359566063dSJacob Faibussowitsch PetscCall(DMConvert(dmAux, DMPLEX, &plexA)); 48369566063dSJacob Faibussowitsch PetscCall(DMGetDS(plexA, &probAux)); 48379566063dSJacob Faibussowitsch PetscCall(PetscDSGetTotalDimension(probAux, &totDimAux)); 48389566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(plexA, §ionAux)); 48393e9753d6SMatthew G. Knepley } 48400c290148SMatthew G. Knepley { 48413e9753d6SMatthew G. Knepley PetscFEGeom *fgeom; 48423e9753d6SMatthew G. Knepley PetscInt maxDegree; 48433e9753d6SMatthew G. Knepley PetscQuadrature qGeom = NULL; 48443e9753d6SMatthew G. Knepley IS pointIS; 48453e9753d6SMatthew G. Knepley const PetscInt *points; 48463e9753d6SMatthew G. Knepley PetscInt numFaces, face, Nq; 48473e9753d6SMatthew G. Knepley 48489566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(key.label, key.value, &pointIS)); 48490c290148SMatthew G. Knepley if (!pointIS) goto end; /* No points with that id on this process */ 48503e9753d6SMatthew G. Knepley { 48513e9753d6SMatthew G. Knepley IS isectIS; 48523e9753d6SMatthew G. Knepley 48533e9753d6SMatthew G. Knepley /* TODO: Special cases of ISIntersect where it is quick to check a priori if one is a superset of the other */ 48549566063dSJacob Faibussowitsch PetscCall(ISIntersect_Caching_Internal(facetIS, pointIS, &isectIS)); 48559566063dSJacob Faibussowitsch PetscCall(ISDestroy(&pointIS)); 48563e9753d6SMatthew G. Knepley pointIS = isectIS; 48573e9753d6SMatthew G. Knepley } 48589566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(pointIS, &numFaces)); 48599566063dSJacob Faibussowitsch PetscCall(ISGetIndices(pointIS, &points)); 48609566063dSJacob Faibussowitsch PetscCall(PetscMalloc4(numFaces * totDim, &u, locX_t ? numFaces * totDim : 0, &u_t, numFaces * totDim, &elemVec, locA ? numFaces * totDimAux : 0, &a)); 48619566063dSJacob Faibussowitsch PetscCall(DMFieldGetDegree(coordField, pointIS, NULL, &maxDegree)); 486248a46eb9SPierre Jolivet if (maxDegree <= 1) PetscCall(DMFieldCreateDefaultQuadrature(coordField, pointIS, &qGeom)); 48633e9753d6SMatthew G. Knepley if (!qGeom) { 48643e9753d6SMatthew G. Knepley PetscFE fe; 48653e9753d6SMatthew G. Knepley 48669566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(prob, key.field, (PetscObject *)&fe)); 48679566063dSJacob Faibussowitsch PetscCall(PetscFEGetFaceQuadrature(fe, &qGeom)); 48689566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)qGeom)); 48693e9753d6SMatthew G. Knepley } 48709566063dSJacob Faibussowitsch PetscCall(PetscQuadratureGetData(qGeom, NULL, NULL, &Nq, NULL, NULL)); 48719566063dSJacob Faibussowitsch PetscCall(DMSNESGetFEGeom(coordField, pointIS, qGeom, PETSC_TRUE, &fgeom)); 48723e9753d6SMatthew G. Knepley for (face = 0; face < numFaces; ++face) { 4873f15274beSMatthew Knepley const PetscInt point = points[face], *support; 48743e9753d6SMatthew G. Knepley PetscScalar *x = NULL; 4875f15274beSMatthew Knepley PetscInt i; 48763e9753d6SMatthew G. Knepley 48779566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(dm, point, &support)); 48789566063dSJacob Faibussowitsch PetscCall(DMPlexVecGetClosure(plex, section, locX, support[0], NULL, &x)); 48793e9753d6SMatthew G. Knepley for (i = 0; i < totDim; ++i) u[face * totDim + i] = x[i]; 48809566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(plex, section, locX, support[0], NULL, &x)); 48813e9753d6SMatthew G. Knepley if (locX_t) { 48829566063dSJacob Faibussowitsch PetscCall(DMPlexVecGetClosure(plex, section, locX_t, support[0], NULL, &x)); 48833e9753d6SMatthew G. Knepley for (i = 0; i < totDim; ++i) u_t[face * totDim + i] = x[i]; 48849566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(plex, section, locX_t, support[0], NULL, &x)); 48853e9753d6SMatthew G. Knepley } 48863e9753d6SMatthew G. Knepley if (locA) { 48873e9753d6SMatthew G. Knepley PetscInt subp; 48883e9753d6SMatthew G. Knepley 48899566063dSJacob Faibussowitsch PetscCall(DMGetEnclosurePoint(plexA, dm, encAux, support[0], &subp)); 48909566063dSJacob Faibussowitsch PetscCall(DMPlexVecGetClosure(plexA, sectionAux, locA, subp, NULL, &x)); 48913e9753d6SMatthew G. Knepley for (i = 0; i < totDimAux; ++i) a[face * totDimAux + i] = x[i]; 48929566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(plexA, sectionAux, locA, subp, NULL, &x)); 48933e9753d6SMatthew G. Knepley } 48943e9753d6SMatthew G. Knepley } 48959566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(elemVec, numFaces * totDim)); 48963e9753d6SMatthew G. Knepley { 48973e9753d6SMatthew G. Knepley PetscFE fe; 48983e9753d6SMatthew G. Knepley PetscInt Nb; 48993e9753d6SMatthew G. Knepley PetscFEGeom *chunkGeom = NULL; 49003e9753d6SMatthew G. Knepley /* Conforming batches */ 49013e9753d6SMatthew G. Knepley PetscInt numChunks, numBatches, numBlocks, Ne, blockSize, batchSize; 49023e9753d6SMatthew G. Knepley /* Remainder */ 49033e9753d6SMatthew G. Knepley PetscInt Nr, offset; 49043e9753d6SMatthew G. Knepley 49059566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(prob, key.field, (PetscObject *)&fe)); 49069566063dSJacob Faibussowitsch PetscCall(PetscFEGetDimension(fe, &Nb)); 49079566063dSJacob Faibussowitsch PetscCall(PetscFEGetTileSizes(fe, NULL, &numBlocks, NULL, &numBatches)); 49083e9753d6SMatthew G. Knepley /* TODO: documentation is unclear about what is going on with these numbers: how should Nb / Nq factor in ? */ 49093e9753d6SMatthew G. Knepley blockSize = Nb; 49103e9753d6SMatthew G. Knepley batchSize = numBlocks * blockSize; 49119566063dSJacob Faibussowitsch PetscCall(PetscFESetTileSizes(fe, blockSize, numBlocks, batchSize, numBatches)); 49123e9753d6SMatthew G. Knepley numChunks = numFaces / (numBatches * batchSize); 49133e9753d6SMatthew G. Knepley Ne = numChunks * numBatches * batchSize; 49143e9753d6SMatthew G. Knepley Nr = numFaces % (numBatches * batchSize); 49153e9753d6SMatthew G. Knepley offset = numFaces - Nr; 49169566063dSJacob Faibussowitsch PetscCall(PetscFEGeomGetChunk(fgeom, 0, offset, &chunkGeom)); 49179566063dSJacob Faibussowitsch PetscCall(PetscFEIntegrateBdResidual(prob, wf, key, Ne, chunkGeom, u, u_t, probAux, a, t, elemVec)); 49189566063dSJacob Faibussowitsch PetscCall(PetscFEGeomRestoreChunk(fgeom, 0, offset, &chunkGeom)); 49199566063dSJacob Faibussowitsch PetscCall(PetscFEGeomGetChunk(fgeom, offset, numFaces, &chunkGeom)); 49208e3a54c0SPierre Jolivet PetscCall(PetscFEIntegrateBdResidual(prob, wf, key, Nr, chunkGeom, &u[offset * totDim], PetscSafePointerPlusOffset(u_t, offset * totDim), probAux, PetscSafePointerPlusOffset(a, offset * totDimAux), t, &elemVec[offset * totDim])); 49219566063dSJacob Faibussowitsch PetscCall(PetscFEGeomRestoreChunk(fgeom, offset, numFaces, &chunkGeom)); 49223e9753d6SMatthew G. Knepley } 49233e9753d6SMatthew G. Knepley for (face = 0; face < numFaces; ++face) { 49243e9753d6SMatthew G. Knepley const PetscInt point = points[face], *support; 49253e9753d6SMatthew G. Knepley 4926673019faSMatthew G. Knepley if (mesh->printFEM > 1) PetscCall(DMPrintCellVector(point, name, totDim, &elemVec[face * totDim])); 49279566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(plex, point, &support)); 49289566063dSJacob Faibussowitsch PetscCall(DMPlexVecSetClosure(plex, NULL, locF, support[0], &elemVec[face * totDim], ADD_ALL_VALUES)); 49293e9753d6SMatthew G. Knepley } 49309566063dSJacob Faibussowitsch PetscCall(DMSNESRestoreFEGeom(coordField, pointIS, qGeom, PETSC_TRUE, &fgeom)); 49319566063dSJacob Faibussowitsch PetscCall(PetscQuadratureDestroy(&qGeom)); 49329566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(pointIS, &points)); 49339566063dSJacob Faibussowitsch PetscCall(ISDestroy(&pointIS)); 49349566063dSJacob Faibussowitsch PetscCall(PetscFree4(u, u_t, elemVec, a)); 49353e9753d6SMatthew G. Knepley } 49360c290148SMatthew G. Knepley end: 4937673019faSMatthew G. Knepley if (mesh->printFEM) { 4938673019faSMatthew G. Knepley PetscSection s; 4939673019faSMatthew G. Knepley Vec locFbc; 4940673019faSMatthew G. Knepley PetscInt pStart, pEnd, maxDof; 4941673019faSMatthew G. Knepley PetscScalar *zeroes; 4942673019faSMatthew G. Knepley 4943673019faSMatthew G. Knepley PetscCall(DMGetLocalSection(dm, &s)); 4944673019faSMatthew G. Knepley PetscCall(VecDuplicate(locF, &locFbc)); 4945673019faSMatthew G. Knepley PetscCall(VecCopy(locF, locFbc)); 4946673019faSMatthew G. Knepley PetscCall(PetscSectionGetChart(s, &pStart, &pEnd)); 4947673019faSMatthew G. Knepley PetscCall(PetscSectionGetMaxDof(s, &maxDof)); 4948673019faSMatthew G. Knepley PetscCall(PetscCalloc1(maxDof, &zeroes)); 4949673019faSMatthew G. Knepley for (PetscInt p = pStart; p < pEnd; p++) PetscCall(VecSetValuesSection(locFbc, s, p, zeroes, INSERT_BC_VALUES)); 4950673019faSMatthew G. Knepley PetscCall(PetscFree(zeroes)); 4951673019faSMatthew G. Knepley PetscCall(DMPrintLocalVec(dm, name, mesh->printTol, locFbc)); 4952673019faSMatthew G. Knepley PetscCall(VecDestroy(&locFbc)); 4953673019faSMatthew G. Knepley } 49549566063dSJacob Faibussowitsch PetscCall(DMDestroy(&plex)); 49559566063dSJacob Faibussowitsch PetscCall(DMDestroy(&plexA)); 49563ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 49573e9753d6SMatthew G. Knepley } 49583e9753d6SMatthew G. Knepley 4959d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeBdResidualSingle(DM dm, PetscReal t, PetscWeakForm wf, PetscFormKey key, Vec locX, Vec locX_t, Vec locF) 4960d71ae5a4SJacob Faibussowitsch { 49613e9753d6SMatthew G. Knepley DMField coordField; 49623e9753d6SMatthew G. Knepley DMLabel depthLabel; 49633e9753d6SMatthew G. Knepley IS facetIS; 49643e9753d6SMatthew G. Knepley PetscInt dim; 49653e9753d6SMatthew G. Knepley 49663e9753d6SMatthew G. Knepley PetscFunctionBegin; 49679566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 49689566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthLabel(dm, &depthLabel)); 49699566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(depthLabel, dim - 1, &facetIS)); 49709566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateField(dm, &coordField)); 49719566063dSJacob Faibussowitsch PetscCall(DMPlexComputeBdResidual_Single_Internal(dm, t, wf, key, locX, locX_t, locF, coordField, facetIS)); 49729566063dSJacob Faibussowitsch PetscCall(ISDestroy(&facetIS)); 49733ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 49743e9753d6SMatthew G. Knepley } 49753e9753d6SMatthew G. Knepley 4976a4e35b19SJacob Faibussowitsch static PetscErrorCode DMPlexComputeBdResidual_Internal(DM dm, Vec locX, Vec locX_t, PetscReal t, Vec locF, void *user) 4977d71ae5a4SJacob Faibussowitsch { 49783e9753d6SMatthew G. Knepley PetscDS prob; 49793e9753d6SMatthew G. Knepley PetscInt numBd, bd; 49803e9753d6SMatthew G. Knepley DMField coordField = NULL; 49813e9753d6SMatthew G. Knepley IS facetIS = NULL; 49823e9753d6SMatthew G. Knepley DMLabel depthLabel; 49833e9753d6SMatthew G. Knepley PetscInt dim; 49843e9753d6SMatthew G. Knepley 49853e9753d6SMatthew G. Knepley PetscFunctionBegin; 49869566063dSJacob Faibussowitsch PetscCall(DMGetDS(dm, &prob)); 49879566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthLabel(dm, &depthLabel)); 49889566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 49899566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(depthLabel, dim - 1, &facetIS)); 49909566063dSJacob Faibussowitsch PetscCall(PetscDSGetNumBoundary(prob, &numBd)); 49913e9753d6SMatthew G. Knepley for (bd = 0; bd < numBd; ++bd) { 499245480ffeSMatthew G. Knepley PetscWeakForm wf; 49933e9753d6SMatthew G. Knepley DMBoundaryConditionType type; 49943e9753d6SMatthew G. Knepley DMLabel label; 49953e9753d6SMatthew G. Knepley const PetscInt *values; 49960c290148SMatthew G. Knepley PetscInt field, numValues, v; 49973e9753d6SMatthew G. Knepley PetscObject obj; 49983e9753d6SMatthew G. Knepley PetscClassId id; 49990c290148SMatthew G. Knepley PetscFormKey key; 50003e9753d6SMatthew G. Knepley 50019566063dSJacob Faibussowitsch PetscCall(PetscDSGetBoundary(prob, bd, &wf, &type, NULL, &label, &numValues, &values, &field, NULL, NULL, NULL, NULL, NULL)); 50023d3e5d66SMatthew G. Knepley if (type & DM_BC_ESSENTIAL) continue; 50039566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(prob, field, &obj)); 50049566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 50053d3e5d66SMatthew G. Knepley if (id != PETSCFE_CLASSID) continue; 50063e9753d6SMatthew G. Knepley if (!facetIS) { 50073e9753d6SMatthew G. Knepley DMLabel depthLabel; 50083e9753d6SMatthew G. Knepley PetscInt dim; 50093e9753d6SMatthew G. Knepley 50109566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthLabel(dm, &depthLabel)); 50119566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 50129566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(depthLabel, dim - 1, &facetIS)); 50133e9753d6SMatthew G. Knepley } 50149566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateField(dm, &coordField)); 50150c290148SMatthew G. Knepley for (v = 0; v < numValues; ++v) { 50160c290148SMatthew G. Knepley key.label = label; 50170c290148SMatthew G. Knepley key.value = values[v]; 50180c290148SMatthew G. Knepley key.field = field; 50190c290148SMatthew G. Knepley key.part = 0; 50209566063dSJacob Faibussowitsch PetscCall(DMPlexComputeBdResidual_Single_Internal(dm, t, wf, key, locX, locX_t, locF, coordField, facetIS)); 50210c290148SMatthew G. Knepley } 50223e9753d6SMatthew G. Knepley } 50239566063dSJacob Faibussowitsch PetscCall(ISDestroy(&facetIS)); 50243ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 50253e9753d6SMatthew G. Knepley } 50263e9753d6SMatthew G. Knepley 5027d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeResidual_Internal(DM dm, PetscFormKey key, IS cellIS, PetscReal time, Vec locX, Vec locX_t, PetscReal t, Vec locF, void *user) 5028d71ae5a4SJacob Faibussowitsch { 50293e9753d6SMatthew G. Knepley DM_Plex *mesh = (DM_Plex *)dm->data; 50303e9753d6SMatthew G. Knepley const char *name = "Residual"; 50313e9753d6SMatthew G. Knepley DM dmAux = NULL; 50323e9753d6SMatthew G. Knepley DM dmGrad = NULL; 50333e9753d6SMatthew G. Knepley DMLabel ghostLabel = NULL; 50346528b96dSMatthew G. Knepley PetscDS ds = NULL; 50356528b96dSMatthew G. Knepley PetscDS dsAux = NULL; 50363e9753d6SMatthew G. Knepley PetscSection section = NULL; 50373e9753d6SMatthew G. Knepley PetscBool useFEM = PETSC_FALSE; 50383e9753d6SMatthew G. Knepley PetscBool useFVM = PETSC_FALSE; 50393e9753d6SMatthew G. Knepley PetscBool isImplicit = (locX_t || time == PETSC_MIN_REAL) ? PETSC_TRUE : PETSC_FALSE; 50403e9753d6SMatthew G. Knepley PetscFV fvm = NULL; 50413e9753d6SMatthew G. Knepley DMField coordField = NULL; 50425962854dSMatthew G. Knepley Vec locA, cellGeometryFVM = NULL, faceGeometryFVM = NULL, locGrad = NULL; 50433e9753d6SMatthew G. Knepley PetscScalar *u = NULL, *u_t, *a, *uL, *uR; 50443e9753d6SMatthew G. Knepley IS chunkIS; 50453e9753d6SMatthew G. Knepley const PetscInt *cells; 50463e9753d6SMatthew G. Knepley PetscInt cStart, cEnd, numCells; 50473e9753d6SMatthew G. Knepley PetscInt Nf, f, totDim, totDimAux, numChunks, cellChunkSize, faceChunkSize, chunk, fStart, fEnd; 50483e9753d6SMatthew G. Knepley PetscInt maxDegree = PETSC_MAX_INT; 50493e9753d6SMatthew G. Knepley PetscQuadrature affineQuad = NULL, *quads = NULL; 50503e9753d6SMatthew G. Knepley PetscFEGeom *affineGeom = NULL, **geoms = NULL; 50513e9753d6SMatthew G. Knepley 50523e9753d6SMatthew G. Knepley PetscFunctionBegin; 50539566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DMPLEX_ResidualFEM, dm, 0, 0, 0)); 50543cc88e6aSStefano Zampini if (!cellIS) goto end; 50553cc88e6aSStefano Zampini PetscCall(ISGetPointRange(cellIS, &cStart, &cEnd, &cells)); 50563cc88e6aSStefano Zampini if (cStart >= cEnd) goto end; 50573e9753d6SMatthew G. Knepley /* TODO The places where we have to use isFE are probably the member functions for the PetscDisc class */ 50583e9753d6SMatthew G. Knepley /* TODO The FVM geometry is over-manipulated. Make the precalc functions return exactly what we need */ 50593e9753d6SMatthew G. Knepley /* FEM+FVM */ 50609566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(dm, 1, &fStart, &fEnd)); 50613e9753d6SMatthew G. Knepley /* 1: Get sizes from dm and dmAux */ 50629566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, §ion)); 50639566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, "ghost", &ghostLabel)); 506407218a29SMatthew G. Knepley PetscCall(DMGetCellDS(dm, cells ? cells[cStart] : cStart, &ds, NULL)); 50659566063dSJacob Faibussowitsch PetscCall(PetscDSGetNumFields(ds, &Nf)); 50669566063dSJacob Faibussowitsch PetscCall(PetscDSGetTotalDimension(ds, &totDim)); 50679566063dSJacob Faibussowitsch PetscCall(DMGetAuxiliaryVec(dm, key.label, key.value, key.part, &locA)); 50683e9753d6SMatthew G. Knepley if (locA) { 50693e9753d6SMatthew G. Knepley PetscInt subcell; 50709566063dSJacob Faibussowitsch PetscCall(VecGetDM(locA, &dmAux)); 50711059d808SMatthew G. Knepley PetscCall(DMGetEnclosurePoint(dmAux, dm, DM_ENC_UNKNOWN, cells ? cells[cStart] : cStart, &subcell)); 507207218a29SMatthew G. Knepley PetscCall(DMGetCellDS(dmAux, subcell, &dsAux, NULL)); 50739566063dSJacob Faibussowitsch PetscCall(PetscDSGetTotalDimension(dsAux, &totDimAux)); 50743e9753d6SMatthew G. Knepley } 50753e9753d6SMatthew G. Knepley /* 2: Get geometric data */ 50763e9753d6SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 50773e9753d6SMatthew G. Knepley PetscObject obj; 50783e9753d6SMatthew G. Knepley PetscClassId id; 50793e9753d6SMatthew G. Knepley PetscBool fimp; 50803e9753d6SMatthew G. Knepley 50819566063dSJacob Faibussowitsch PetscCall(PetscDSGetImplicit(ds, f, &fimp)); 50823e9753d6SMatthew G. Knepley if (isImplicit != fimp) continue; 50839566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(ds, f, &obj)); 50849566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 5085ad540459SPierre Jolivet if (id == PETSCFE_CLASSID) useFEM = PETSC_TRUE; 50869371c9d4SSatish Balay if (id == PETSCFV_CLASSID) { 50879371c9d4SSatish Balay useFVM = PETSC_TRUE; 50889371c9d4SSatish Balay fvm = (PetscFV)obj; 50899371c9d4SSatish Balay } 50903e9753d6SMatthew G. Knepley } 50913e9753d6SMatthew G. Knepley if (useFEM) { 50929566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateField(dm, &coordField)); 50939566063dSJacob Faibussowitsch PetscCall(DMFieldGetDegree(coordField, cellIS, NULL, &maxDegree)); 50943e9753d6SMatthew G. Knepley if (maxDegree <= 1) { 50959566063dSJacob Faibussowitsch PetscCall(DMFieldCreateDefaultQuadrature(coordField, cellIS, &affineQuad)); 509648a46eb9SPierre Jolivet if (affineQuad) PetscCall(DMSNESGetFEGeom(coordField, cellIS, affineQuad, PETSC_FALSE, &affineGeom)); 50973e9753d6SMatthew G. Knepley } else { 50989566063dSJacob Faibussowitsch PetscCall(PetscCalloc2(Nf, &quads, Nf, &geoms)); 50993e9753d6SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 51003e9753d6SMatthew G. Knepley PetscObject obj; 51013e9753d6SMatthew G. Knepley PetscClassId id; 51023e9753d6SMatthew G. Knepley PetscBool fimp; 51033e9753d6SMatthew G. Knepley 51049566063dSJacob Faibussowitsch PetscCall(PetscDSGetImplicit(ds, f, &fimp)); 51053e9753d6SMatthew G. Knepley if (isImplicit != fimp) continue; 51069566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(ds, f, &obj)); 51079566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 51083e9753d6SMatthew G. Knepley if (id == PETSCFE_CLASSID) { 51093e9753d6SMatthew G. Knepley PetscFE fe = (PetscFE)obj; 51103e9753d6SMatthew G. Knepley 51119566063dSJacob Faibussowitsch PetscCall(PetscFEGetQuadrature(fe, &quads[f])); 51129566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)quads[f])); 51139566063dSJacob Faibussowitsch PetscCall(DMSNESGetFEGeom(coordField, cellIS, quads[f], PETSC_FALSE, &geoms[f])); 51143e9753d6SMatthew G. Knepley } 51153e9753d6SMatthew G. Knepley } 51163e9753d6SMatthew G. Knepley } 51173e9753d6SMatthew G. Knepley } 51185962854dSMatthew G. Knepley // Handle non-essential (e.g. outflow) boundary values 51193e9753d6SMatthew G. Knepley if (useFVM) { 51205962854dSMatthew G. Knepley PetscCall(DMPlexInsertBoundaryValuesFVM(dm, fvm, locX, time, &locGrad)); 51219566063dSJacob Faibussowitsch PetscCall(DMPlexGetGeometryFVM(dm, &faceGeometryFVM, &cellGeometryFVM, NULL)); 51229566063dSJacob Faibussowitsch PetscCall(DMPlexGetGradientDM(dm, fvm, &dmGrad)); 51233e9753d6SMatthew G. Knepley } 51243e9753d6SMatthew G. Knepley /* Loop over chunks */ 51259566063dSJacob Faibussowitsch if (useFEM) PetscCall(ISCreate(PETSC_COMM_SELF, &chunkIS)); 51263e9753d6SMatthew G. Knepley numCells = cEnd - cStart; 51273e9753d6SMatthew G. Knepley numChunks = 1; 51283e9753d6SMatthew G. Knepley cellChunkSize = numCells / numChunks; 51293e9753d6SMatthew G. Knepley faceChunkSize = (fEnd - fStart) / numChunks; 51303e9753d6SMatthew G. Knepley numChunks = PetscMin(1, numCells); 51313e9753d6SMatthew G. Knepley for (chunk = 0; chunk < numChunks; ++chunk) { 51323e9753d6SMatthew G. Knepley PetscScalar *elemVec, *fluxL, *fluxR; 51333e9753d6SMatthew G. Knepley PetscReal *vol; 51343e9753d6SMatthew G. Knepley PetscFVFaceGeom *fgeom; 51353e9753d6SMatthew G. Knepley PetscInt cS = cStart + chunk * cellChunkSize, cE = PetscMin(cS + cellChunkSize, cEnd), numCells = cE - cS, c; 51363e9753d6SMatthew G. Knepley PetscInt fS = fStart + chunk * faceChunkSize, fE = PetscMin(fS + faceChunkSize, fEnd), numFaces = 0, face; 51373e9753d6SMatthew G. Knepley 51383e9753d6SMatthew G. Knepley /* Extract field coefficients */ 51393e9753d6SMatthew G. Knepley if (useFEM) { 51409566063dSJacob Faibussowitsch PetscCall(ISGetPointSubrange(chunkIS, cS, cE, cells)); 51419566063dSJacob Faibussowitsch PetscCall(DMPlexGetCellFields(dm, chunkIS, locX, locX_t, locA, &u, &u_t, &a)); 51429566063dSJacob Faibussowitsch PetscCall(DMGetWorkArray(dm, numCells * totDim, MPIU_SCALAR, &elemVec)); 51439566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(elemVec, numCells * totDim)); 51443e9753d6SMatthew G. Knepley } 51453e9753d6SMatthew G. Knepley if (useFVM) { 51469566063dSJacob Faibussowitsch PetscCall(DMPlexGetFaceFields(dm, fS, fE, locX, locX_t, faceGeometryFVM, cellGeometryFVM, locGrad, &numFaces, &uL, &uR)); 51479566063dSJacob Faibussowitsch PetscCall(DMPlexGetFaceGeometry(dm, fS, fE, faceGeometryFVM, cellGeometryFVM, &numFaces, &fgeom, &vol)); 51489566063dSJacob Faibussowitsch PetscCall(DMGetWorkArray(dm, numFaces * totDim, MPIU_SCALAR, &fluxL)); 51499566063dSJacob Faibussowitsch PetscCall(DMGetWorkArray(dm, numFaces * totDim, MPIU_SCALAR, &fluxR)); 51509566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(fluxL, numFaces * totDim)); 51519566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(fluxR, numFaces * totDim)); 51523e9753d6SMatthew G. Knepley } 51533e9753d6SMatthew G. Knepley /* TODO We will interlace both our field coefficients (u, u_t, uL, uR, etc.) and our output (elemVec, fL, fR). I think this works */ 51543e9753d6SMatthew G. Knepley /* Loop over fields */ 51553e9753d6SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 51563e9753d6SMatthew G. Knepley PetscObject obj; 51573e9753d6SMatthew G. Knepley PetscClassId id; 51583e9753d6SMatthew G. Knepley PetscBool fimp; 51593e9753d6SMatthew G. Knepley PetscInt numChunks, numBatches, batchSize, numBlocks, blockSize, Ne, Nr, offset; 51603e9753d6SMatthew G. Knepley 51616528b96dSMatthew G. Knepley key.field = f; 51629566063dSJacob Faibussowitsch PetscCall(PetscDSGetImplicit(ds, f, &fimp)); 51633e9753d6SMatthew G. Knepley if (isImplicit != fimp) continue; 51649566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(ds, f, &obj)); 51659566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 51663e9753d6SMatthew G. Knepley if (id == PETSCFE_CLASSID) { 51673e9753d6SMatthew G. Knepley PetscFE fe = (PetscFE)obj; 51683e9753d6SMatthew G. Knepley PetscFEGeom *geom = affineGeom ? affineGeom : geoms[f]; 51693e9753d6SMatthew G. Knepley PetscFEGeom *chunkGeom = NULL; 51703e9753d6SMatthew G. Knepley PetscQuadrature quad = affineQuad ? affineQuad : quads[f]; 51713e9753d6SMatthew G. Knepley PetscInt Nq, Nb; 51723e9753d6SMatthew G. Knepley 51739566063dSJacob Faibussowitsch PetscCall(PetscFEGetTileSizes(fe, NULL, &numBlocks, NULL, &numBatches)); 51749566063dSJacob Faibussowitsch PetscCall(PetscQuadratureGetData(quad, NULL, NULL, &Nq, NULL, NULL)); 51759566063dSJacob Faibussowitsch PetscCall(PetscFEGetDimension(fe, &Nb)); 51763e9753d6SMatthew G. Knepley blockSize = Nb; 51773e9753d6SMatthew G. Knepley batchSize = numBlocks * blockSize; 51789566063dSJacob Faibussowitsch PetscCall(PetscFESetTileSizes(fe, blockSize, numBlocks, batchSize, numBatches)); 51793e9753d6SMatthew G. Knepley numChunks = numCells / (numBatches * batchSize); 51803e9753d6SMatthew G. Knepley Ne = numChunks * numBatches * batchSize; 51813e9753d6SMatthew G. Knepley Nr = numCells % (numBatches * batchSize); 51823e9753d6SMatthew G. Knepley offset = numCells - Nr; 51833e9753d6SMatthew G. Knepley /* Integrate FE residual to get elemVec (need fields at quadrature points) */ 51843e9753d6SMatthew G. Knepley /* For FV, I think we use a P0 basis and the cell coefficients (for subdivided cells, we can tweak the basis tabulation to be the indicator function) */ 51859566063dSJacob Faibussowitsch PetscCall(PetscFEGeomGetChunk(geom, 0, offset, &chunkGeom)); 51869566063dSJacob Faibussowitsch PetscCall(PetscFEIntegrateResidual(ds, key, Ne, chunkGeom, u, u_t, dsAux, a, t, elemVec)); 51879566063dSJacob Faibussowitsch PetscCall(PetscFEGeomGetChunk(geom, offset, numCells, &chunkGeom)); 51888e3a54c0SPierre Jolivet PetscCall(PetscFEIntegrateResidual(ds, key, Nr, chunkGeom, &u[offset * totDim], PetscSafePointerPlusOffset(u_t, offset * totDim), dsAux, PetscSafePointerPlusOffset(a, offset * totDimAux), t, &elemVec[offset * totDim])); 51899566063dSJacob Faibussowitsch PetscCall(PetscFEGeomRestoreChunk(geom, offset, numCells, &chunkGeom)); 51903e9753d6SMatthew G. Knepley } else if (id == PETSCFV_CLASSID) { 51913e9753d6SMatthew G. Knepley PetscFV fv = (PetscFV)obj; 51923e9753d6SMatthew G. Knepley 51933e9753d6SMatthew G. Knepley Ne = numFaces; 51943e9753d6SMatthew G. Knepley /* Riemann solve over faces (need fields at face centroids) */ 51953e9753d6SMatthew G. Knepley /* We need to evaluate FE fields at those coordinates */ 51969566063dSJacob Faibussowitsch PetscCall(PetscFVIntegrateRHSFunction(fv, ds, f, Ne, fgeom, vol, uL, uR, fluxL, fluxR)); 519763a3b9bcSJacob Faibussowitsch } else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, f); 51983e9753d6SMatthew G. Knepley } 51993e9753d6SMatthew G. Knepley /* Loop over domain */ 52003e9753d6SMatthew G. Knepley if (useFEM) { 52013e9753d6SMatthew G. Knepley /* Add elemVec to locX */ 52023e9753d6SMatthew G. Knepley for (c = cS; c < cE; ++c) { 52033e9753d6SMatthew G. Knepley const PetscInt cell = cells ? cells[c] : c; 52043e9753d6SMatthew G. Knepley const PetscInt cind = c - cStart; 52053e9753d6SMatthew G. Knepley 52069566063dSJacob Faibussowitsch if (mesh->printFEM > 1) PetscCall(DMPrintCellVector(cell, name, totDim, &elemVec[cind * totDim])); 52073e9753d6SMatthew G. Knepley if (ghostLabel) { 52083e9753d6SMatthew G. Knepley PetscInt ghostVal; 52093e9753d6SMatthew G. Knepley 52109566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(ghostLabel, cell, &ghostVal)); 52113e9753d6SMatthew G. Knepley if (ghostVal > 0) continue; 52123e9753d6SMatthew G. Knepley } 52139566063dSJacob Faibussowitsch PetscCall(DMPlexVecSetClosure(dm, section, locF, cell, &elemVec[cind * totDim], ADD_ALL_VALUES)); 52143e9753d6SMatthew G. Knepley } 52153e9753d6SMatthew G. Knepley } 52163e9753d6SMatthew G. Knepley if (useFVM) { 52173e9753d6SMatthew G. Knepley PetscScalar *fa; 52183e9753d6SMatthew G. Knepley PetscInt iface; 52193e9753d6SMatthew G. Knepley 52209566063dSJacob Faibussowitsch PetscCall(VecGetArray(locF, &fa)); 52213e9753d6SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 52223e9753d6SMatthew G. Knepley PetscFV fv; 52233e9753d6SMatthew G. Knepley PetscObject obj; 52243e9753d6SMatthew G. Knepley PetscClassId id; 52255962854dSMatthew G. Knepley PetscInt cdim, foff, pdim; 52263e9753d6SMatthew G. Knepley 52275962854dSMatthew G. Knepley PetscCall(DMGetCoordinateDim(dm, &cdim)); 52289566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(ds, f, &obj)); 52299566063dSJacob Faibussowitsch PetscCall(PetscDSGetFieldOffset(ds, f, &foff)); 52309566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 52313e9753d6SMatthew G. Knepley if (id != PETSCFV_CLASSID) continue; 52323e9753d6SMatthew G. Knepley fv = (PetscFV)obj; 52339566063dSJacob Faibussowitsch PetscCall(PetscFVGetNumComponents(fv, &pdim)); 52343e9753d6SMatthew G. Knepley /* Accumulate fluxes to cells */ 52353e9753d6SMatthew G. Knepley for (face = fS, iface = 0; face < fE; ++face) { 52363e9753d6SMatthew G. Knepley const PetscInt *scells; 52373e9753d6SMatthew G. Knepley PetscScalar *fL = NULL, *fR = NULL; 52383e9753d6SMatthew G. Knepley PetscInt ghost, d, nsupp, nchild; 52393e9753d6SMatthew G. Knepley 52409566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(ghostLabel, face, &ghost)); 52419566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dm, face, &nsupp)); 52429566063dSJacob Faibussowitsch PetscCall(DMPlexGetTreeChildren(dm, face, &nchild, NULL)); 52433e9753d6SMatthew G. Knepley if (ghost >= 0 || nsupp > 2 || nchild > 0) continue; 52449566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(dm, face, &scells)); 52459566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(ghostLabel, scells[0], &ghost)); 52469566063dSJacob Faibussowitsch if (ghost <= 0) PetscCall(DMPlexPointLocalFieldRef(dm, scells[0], f, fa, &fL)); 52479566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(ghostLabel, scells[1], &ghost)); 52489566063dSJacob Faibussowitsch if (ghost <= 0) PetscCall(DMPlexPointLocalFieldRef(dm, scells[1], f, fa, &fR)); 52495962854dSMatthew G. Knepley if (mesh->printFVM > 1) { 52505962854dSMatthew G. Knepley PetscCall(DMPrintCellVectorReal(face, "Residual: normal", cdim, fgeom[iface].normal)); 52515962854dSMatthew G. Knepley PetscCall(DMPrintCellVector(face, "Residual: left state", pdim, &uL[iface * totDim + foff])); 52525962854dSMatthew G. Knepley PetscCall(DMPrintCellVector(face, "Residual: right state", pdim, &uR[iface * totDim + foff])); 52535962854dSMatthew G. Knepley PetscCall(DMPrintCellVector(face, "Residual: left flux", pdim, &fluxL[iface * totDim + foff])); 52545962854dSMatthew G. Knepley PetscCall(DMPrintCellVector(face, "Residual: right flux", pdim, &fluxR[iface * totDim + foff])); 52555962854dSMatthew G. Knepley } 52563e9753d6SMatthew G. Knepley for (d = 0; d < pdim; ++d) { 52573e9753d6SMatthew G. Knepley if (fL) fL[d] -= fluxL[iface * totDim + foff + d]; 52583e9753d6SMatthew G. Knepley if (fR) fR[d] += fluxR[iface * totDim + foff + d]; 52593e9753d6SMatthew G. Knepley } 52603e9753d6SMatthew G. Knepley ++iface; 52613e9753d6SMatthew G. Knepley } 52623e9753d6SMatthew G. Knepley } 52639566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(locF, &fa)); 52643e9753d6SMatthew G. Knepley } 52653e9753d6SMatthew G. Knepley /* Handle time derivative */ 52663e9753d6SMatthew G. Knepley if (locX_t) { 52673e9753d6SMatthew G. Knepley PetscScalar *x_t, *fa; 52683e9753d6SMatthew G. Knepley 52699566063dSJacob Faibussowitsch PetscCall(VecGetArray(locF, &fa)); 52709566063dSJacob Faibussowitsch PetscCall(VecGetArray(locX_t, &x_t)); 52713e9753d6SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 52723e9753d6SMatthew G. Knepley PetscFV fv; 52733e9753d6SMatthew G. Knepley PetscObject obj; 52743e9753d6SMatthew G. Knepley PetscClassId id; 52753e9753d6SMatthew G. Knepley PetscInt pdim, d; 52763e9753d6SMatthew G. Knepley 52779566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(ds, f, &obj)); 52789566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 52793e9753d6SMatthew G. Knepley if (id != PETSCFV_CLASSID) continue; 52803e9753d6SMatthew G. Knepley fv = (PetscFV)obj; 52819566063dSJacob Faibussowitsch PetscCall(PetscFVGetNumComponents(fv, &pdim)); 52823e9753d6SMatthew G. Knepley for (c = cS; c < cE; ++c) { 52833e9753d6SMatthew G. Knepley const PetscInt cell = cells ? cells[c] : c; 52843e9753d6SMatthew G. Knepley PetscScalar *u_t, *r; 52853e9753d6SMatthew G. Knepley 52863e9753d6SMatthew G. Knepley if (ghostLabel) { 52873e9753d6SMatthew G. Knepley PetscInt ghostVal; 52883e9753d6SMatthew G. Knepley 52899566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(ghostLabel, cell, &ghostVal)); 52903e9753d6SMatthew G. Knepley if (ghostVal > 0) continue; 52913e9753d6SMatthew G. Knepley } 52929566063dSJacob Faibussowitsch PetscCall(DMPlexPointLocalFieldRead(dm, cell, f, x_t, &u_t)); 52939566063dSJacob Faibussowitsch PetscCall(DMPlexPointLocalFieldRef(dm, cell, f, fa, &r)); 52943e9753d6SMatthew G. Knepley for (d = 0; d < pdim; ++d) r[d] += u_t[d]; 52953e9753d6SMatthew G. Knepley } 52963e9753d6SMatthew G. Knepley } 52979566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(locX_t, &x_t)); 52989566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(locF, &fa)); 52993e9753d6SMatthew G. Knepley } 53003e9753d6SMatthew G. Knepley if (useFEM) { 53019566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreCellFields(dm, chunkIS, locX, locX_t, locA, &u, &u_t, &a)); 53029566063dSJacob Faibussowitsch PetscCall(DMRestoreWorkArray(dm, numCells * totDim, MPIU_SCALAR, &elemVec)); 53033e9753d6SMatthew G. Knepley } 53043e9753d6SMatthew G. Knepley if (useFVM) { 53059566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreFaceFields(dm, fS, fE, locX, locX_t, faceGeometryFVM, cellGeometryFVM, locGrad, &numFaces, &uL, &uR)); 53069566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreFaceGeometry(dm, fS, fE, faceGeometryFVM, cellGeometryFVM, &numFaces, &fgeom, &vol)); 53079566063dSJacob Faibussowitsch PetscCall(DMRestoreWorkArray(dm, numFaces * totDim, MPIU_SCALAR, &fluxL)); 53089566063dSJacob Faibussowitsch PetscCall(DMRestoreWorkArray(dm, numFaces * totDim, MPIU_SCALAR, &fluxR)); 53099566063dSJacob Faibussowitsch if (dmGrad) PetscCall(DMRestoreLocalVector(dmGrad, &locGrad)); 53103e9753d6SMatthew G. Knepley } 53113e9753d6SMatthew G. Knepley } 53129566063dSJacob Faibussowitsch if (useFEM) PetscCall(ISDestroy(&chunkIS)); 53139566063dSJacob Faibussowitsch PetscCall(ISRestorePointRange(cellIS, &cStart, &cEnd, &cells)); 53143e9753d6SMatthew G. Knepley 53153e9753d6SMatthew G. Knepley if (useFEM) { 53169566063dSJacob Faibussowitsch PetscCall(DMPlexComputeBdResidual_Internal(dm, locX, locX_t, t, locF, user)); 53173e9753d6SMatthew G. Knepley 53183e9753d6SMatthew G. Knepley if (maxDegree <= 1) { 53199566063dSJacob Faibussowitsch PetscCall(DMSNESRestoreFEGeom(coordField, cellIS, affineQuad, PETSC_FALSE, &affineGeom)); 53209566063dSJacob Faibussowitsch PetscCall(PetscQuadratureDestroy(&affineQuad)); 53213e9753d6SMatthew G. Knepley } else { 53223e9753d6SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 53239566063dSJacob Faibussowitsch PetscCall(DMSNESRestoreFEGeom(coordField, cellIS, quads[f], PETSC_FALSE, &geoms[f])); 53249566063dSJacob Faibussowitsch PetscCall(PetscQuadratureDestroy(&quads[f])); 53253e9753d6SMatthew G. Knepley } 53269566063dSJacob Faibussowitsch PetscCall(PetscFree2(quads, geoms)); 53273e9753d6SMatthew G. Knepley } 53283e9753d6SMatthew G. Knepley } 53293e9753d6SMatthew G. Knepley 53303e9753d6SMatthew G. Knepley /* FEM */ 53313e9753d6SMatthew G. Knepley /* 1: Get sizes from dm and dmAux */ 53323e9753d6SMatthew G. Knepley /* 2: Get geometric data */ 53333e9753d6SMatthew G. Knepley /* 3: Handle boundary values */ 53343e9753d6SMatthew G. Knepley /* 4: Loop over domain */ 53353e9753d6SMatthew G. Knepley /* Extract coefficients */ 53363e9753d6SMatthew G. Knepley /* Loop over fields */ 53373e9753d6SMatthew G. Knepley /* Set tiling for FE*/ 53383e9753d6SMatthew G. Knepley /* Integrate FE residual to get elemVec */ 53393e9753d6SMatthew G. Knepley /* Loop over subdomain */ 53403e9753d6SMatthew G. Knepley /* Loop over quad points */ 53413e9753d6SMatthew G. Knepley /* Transform coords to real space */ 53423e9753d6SMatthew G. Knepley /* Evaluate field and aux fields at point */ 53433e9753d6SMatthew G. Knepley /* Evaluate residual at point */ 53443e9753d6SMatthew G. Knepley /* Transform residual to real space */ 53453e9753d6SMatthew G. Knepley /* Add residual to elemVec */ 53463e9753d6SMatthew G. Knepley /* Loop over domain */ 53473e9753d6SMatthew G. Knepley /* Add elemVec to locX */ 53483e9753d6SMatthew G. Knepley 53493e9753d6SMatthew G. Knepley /* FVM */ 53503e9753d6SMatthew G. Knepley /* Get geometric data */ 53513e9753d6SMatthew G. Knepley /* If using gradients */ 53523e9753d6SMatthew G. Knepley /* Compute gradient data */ 53533e9753d6SMatthew G. Knepley /* Loop over domain faces */ 53543e9753d6SMatthew G. Knepley /* Count computational faces */ 53553e9753d6SMatthew G. Knepley /* Reconstruct cell gradient */ 53563e9753d6SMatthew G. Knepley /* Loop over domain cells */ 53573e9753d6SMatthew G. Knepley /* Limit cell gradients */ 53583e9753d6SMatthew G. Knepley /* Handle boundary values */ 53593e9753d6SMatthew G. Knepley /* Loop over domain faces */ 53603e9753d6SMatthew G. Knepley /* Read out field, centroid, normal, volume for each side of face */ 53613e9753d6SMatthew G. Knepley /* Riemann solve over faces */ 53623e9753d6SMatthew G. Knepley /* Loop over domain faces */ 53633e9753d6SMatthew G. Knepley /* Accumulate fluxes to cells */ 53643e9753d6SMatthew G. Knepley /* TODO Change printFEM to printDisc here */ 53653e9753d6SMatthew G. Knepley if (mesh->printFEM) { 53663e9753d6SMatthew G. Knepley Vec locFbc; 53673e9753d6SMatthew G. Knepley PetscInt pStart, pEnd, p, maxDof; 53683e9753d6SMatthew G. Knepley PetscScalar *zeroes; 53693e9753d6SMatthew G. Knepley 53709566063dSJacob Faibussowitsch PetscCall(VecDuplicate(locF, &locFbc)); 53719566063dSJacob Faibussowitsch PetscCall(VecCopy(locF, locFbc)); 53729566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(section, &pStart, &pEnd)); 53739566063dSJacob Faibussowitsch PetscCall(PetscSectionGetMaxDof(section, &maxDof)); 53749566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(maxDof, &zeroes)); 537548a46eb9SPierre Jolivet for (p = pStart; p < pEnd; p++) PetscCall(VecSetValuesSection(locFbc, section, p, zeroes, INSERT_BC_VALUES)); 53769566063dSJacob Faibussowitsch PetscCall(PetscFree(zeroes)); 53779566063dSJacob Faibussowitsch PetscCall(DMPrintLocalVec(dm, name, mesh->printTol, locFbc)); 53789566063dSJacob Faibussowitsch PetscCall(VecDestroy(&locFbc)); 53793e9753d6SMatthew G. Knepley } 53803cc88e6aSStefano Zampini end: 53819566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DMPLEX_ResidualFEM, dm, 0, 0, 0)); 53823ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 53833e9753d6SMatthew G. Knepley } 53843e9753d6SMatthew G. Knepley 53856528b96dSMatthew G. Knepley /* 53866528b96dSMatthew G. Knepley 1) Allow multiple kernels for BdResidual for hybrid DS 53876528b96dSMatthew G. Knepley 53886528b96dSMatthew G. Knepley DONE 2) Get out dsAux for either side at the same time as cohesive cell dsAux 53896528b96dSMatthew G. Knepley 53906528b96dSMatthew G. Knepley DONE 3) Change DMGetCellFields() to get different aux data a[] for each side 53916528b96dSMatthew G. Knepley - I think I just need to replace a[] with the closure from each face 53926528b96dSMatthew G. Knepley 53936528b96dSMatthew G. Knepley 4) Run both kernels for each non-hybrid field with correct dsAux, and then hybrid field as before 53946528b96dSMatthew G. Knepley */ 5395d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeResidual_Hybrid_Internal(DM dm, PetscFormKey key[], IS cellIS, PetscReal time, Vec locX, Vec locX_t, PetscReal t, Vec locF, void *user) 5396d71ae5a4SJacob Faibussowitsch { 53973e9753d6SMatthew G. Knepley DM_Plex *mesh = (DM_Plex *)dm->data; 53983e9753d6SMatthew G. Knepley const char *name = "Hybrid Residual"; 539904c51a94SMatthew G. Knepley DM dmAux[3] = {NULL, NULL, NULL}; 54003e9753d6SMatthew G. Knepley DMLabel ghostLabel = NULL; 54016528b96dSMatthew G. Knepley PetscDS ds = NULL; 540207218a29SMatthew G. Knepley PetscDS dsIn = NULL; 54036528b96dSMatthew G. Knepley PetscDS dsAux[3] = {NULL, NULL, NULL}; 540404c51a94SMatthew G. Knepley Vec locA[3] = {NULL, NULL, NULL}; 540507218a29SMatthew G. Knepley DM dmScale[3] = {NULL, NULL, NULL}; 540607218a29SMatthew G. Knepley PetscDS dsScale[3] = {NULL, NULL, NULL}; 540707218a29SMatthew G. Knepley Vec locS[3] = {NULL, NULL, NULL}; 54083e9753d6SMatthew G. Knepley PetscSection section = NULL; 54093e9753d6SMatthew G. Knepley DMField coordField = NULL; 541007218a29SMatthew G. Knepley PetscScalar *a[3] = {NULL, NULL, NULL}; 541107218a29SMatthew G. Knepley PetscScalar *s[3] = {NULL, NULL, NULL}; 5412b2ab40e6SMatthew G. Knepley PetscScalar *u = NULL, *u_t; 541307218a29SMatthew G. Knepley PetscScalar *elemVecNeg, *elemVecPos, *elemVecCoh; 54143e9753d6SMatthew G. Knepley IS chunkIS; 54153e9753d6SMatthew G. Knepley const PetscInt *cells; 54163e9753d6SMatthew G. Knepley PetscInt *faces; 54173e9753d6SMatthew G. Knepley PetscInt cStart, cEnd, numCells; 54183e2b0218SMatthew G. Knepley PetscInt Nf, f, totDim, totDimIn, totDimAux[3], totDimScale[3], numChunks, cellChunkSize, chunk; 54193e9753d6SMatthew G. Knepley PetscInt maxDegree = PETSC_MAX_INT; 54203e9753d6SMatthew G. Knepley PetscQuadrature affineQuad = NULL, *quads = NULL; 54213e9753d6SMatthew G. Knepley PetscFEGeom *affineGeom = NULL, **geoms = NULL; 54223e9753d6SMatthew G. Knepley 54233e9753d6SMatthew G. Knepley PetscFunctionBegin; 54243cc88e6aSStefano Zampini PetscCall(PetscLogEventBegin(DMPLEX_ResidualFEM, dm, 0, 0, 0)); 54253cc88e6aSStefano Zampini if (!cellIS) goto end; 5426437e83fbSMatthew G. Knepley PetscCall(ISGetPointRange(cellIS, &cStart, &cEnd, &cells)); 5427437e83fbSMatthew G. Knepley PetscCall(ISGetLocalSize(cellIS, &numCells)); 54283cc88e6aSStefano Zampini if (cStart >= cEnd) goto end; 54295fedec97SMatthew G. Knepley if ((key[0].label == key[1].label) && (key[0].value == key[1].value) && (key[0].part == key[1].part)) { 54305fedec97SMatthew G. Knepley const char *name; 54319566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)key[0].label, &name)); 543263a3b9bcSJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Form keys for each side of a cohesive surface must be different (%s, %" PetscInt_FMT ", %" PetscInt_FMT ")", name, key[0].value, key[0].part); 54335fedec97SMatthew G. Knepley } 54343e9753d6SMatthew G. Knepley /* TODO The places where we have to use isFE are probably the member functions for the PetscDisc class */ 54353e9753d6SMatthew G. Knepley /* FEM */ 54363e9753d6SMatthew G. Knepley /* 1: Get sizes from dm and dmAux */ 54379566063dSJacob Faibussowitsch PetscCall(DMGetSection(dm, §ion)); 54389566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, "ghost", &ghostLabel)); 543907218a29SMatthew G. Knepley PetscCall(DMGetCellDS(dm, cells ? cells[cStart] : cStart, &ds, &dsIn)); 54409566063dSJacob Faibussowitsch PetscCall(PetscDSGetNumFields(ds, &Nf)); 54419566063dSJacob Faibussowitsch PetscCall(PetscDSGetTotalDimension(ds, &totDim)); 544207218a29SMatthew G. Knepley PetscCall(PetscDSGetTotalDimension(dsIn, &totDimIn)); 54439566063dSJacob Faibussowitsch PetscCall(DMGetAuxiliaryVec(dm, key[2].label, key[2].value, key[2].part, &locA[2])); 544404c51a94SMatthew G. Knepley if (locA[2]) { 54451059d808SMatthew G. Knepley const PetscInt cellStart = cells ? cells[cStart] : cStart; 54461059d808SMatthew G. Knepley 54479566063dSJacob Faibussowitsch PetscCall(VecGetDM(locA[2], &dmAux[2])); 544807218a29SMatthew G. Knepley PetscCall(DMGetCellDS(dmAux[2], cellStart, &dsAux[2], NULL)); 54499566063dSJacob Faibussowitsch PetscCall(PetscDSGetTotalDimension(dsAux[2], &totDimAux[2])); 54506528b96dSMatthew G. Knepley { 54516528b96dSMatthew G. Knepley const PetscInt *cone; 54526528b96dSMatthew G. Knepley PetscInt c; 54536528b96dSMatthew G. Knepley 54541059d808SMatthew G. Knepley PetscCall(DMPlexGetCone(dm, cellStart, &cone)); 54556528b96dSMatthew G. Knepley for (c = 0; c < 2; ++c) { 54566528b96dSMatthew G. Knepley const PetscInt *support; 54576528b96dSMatthew G. Knepley PetscInt ssize, s; 54586528b96dSMatthew G. Knepley 54599566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(dm, cone[c], &support)); 54609566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dm, cone[c], &ssize)); 54611059d808SMatthew G. Knepley PetscCheck(ssize == 2, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Face %" PetscInt_FMT " from cell %" PetscInt_FMT " has support size %" PetscInt_FMT " != 2", cone[c], cellStart, ssize); 54621059d808SMatthew G. Knepley if (support[0] == cellStart) s = 1; 54631059d808SMatthew G. Knepley else if (support[1] == cellStart) s = 0; 54641059d808SMatthew G. Knepley else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Face %" PetscInt_FMT " does not have cell %" PetscInt_FMT " in its support", cone[c], cellStart); 54659566063dSJacob Faibussowitsch PetscCall(DMGetAuxiliaryVec(dm, key[c].label, key[c].value, key[c].part, &locA[c])); 5466c75bfeddSPierre Jolivet PetscCheck(locA[c], PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Must have auxiliary vector for (%p, %" PetscInt_FMT ", %" PetscInt_FMT ")", (void *)key[c].label, key[c].value, key[c].part); 54679566063dSJacob Faibussowitsch if (locA[c]) PetscCall(VecGetDM(locA[c], &dmAux[c])); 5468ad540459SPierre Jolivet else dmAux[c] = dmAux[2]; 546907218a29SMatthew G. Knepley PetscCall(DMGetCellDS(dmAux[c], support[s], &dsAux[c], NULL)); 54709566063dSJacob Faibussowitsch PetscCall(PetscDSGetTotalDimension(dsAux[c], &totDimAux[c])); 54716528b96dSMatthew G. Knepley } 54726528b96dSMatthew G. Knepley } 54733e9753d6SMatthew G. Knepley } 547407218a29SMatthew G. Knepley /* Handle mass matrix scaling 547507218a29SMatthew G. Knepley The field in key[2] is the field to be scaled, and the scaling field is the first in the dsScale */ 547607218a29SMatthew G. Knepley PetscCall(DMGetAuxiliaryVec(dm, key[2].label, -key[2].value, key[2].part, &locS[2])); 547707218a29SMatthew G. Knepley if (locS[2]) { 54783e2b0218SMatthew G. Knepley const PetscInt cellStart = cells ? cells[cStart] : cStart; 547907218a29SMatthew G. Knepley PetscInt Nb, Nbs; 548007218a29SMatthew G. Knepley 548107218a29SMatthew G. Knepley PetscCall(VecGetDM(locS[2], &dmScale[2])); 54823e2b0218SMatthew G. Knepley PetscCall(DMGetCellDS(dmScale[2], cellStart, &dsScale[2], NULL)); 54833e2b0218SMatthew G. Knepley PetscCall(PetscDSGetTotalDimension(dsScale[2], &totDimScale[2])); 548407218a29SMatthew G. Knepley // BRAD: This is not set correctly 548507218a29SMatthew G. Knepley key[2].field = 2; 548607218a29SMatthew G. Knepley PetscCall(PetscDSGetFieldSize(ds, key[2].field, &Nb)); 548707218a29SMatthew G. Knepley PetscCall(PetscDSGetFieldSize(dsScale[2], 0, &Nbs)); 548807218a29SMatthew G. Knepley PetscCheck(Nb == Nbs, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "Field %" PetscInt_FMT " of size %" PetscInt_FMT " cannot be scaled by field of size %" PetscInt_FMT, key[2].field, Nb, Nbs); 54893e2b0218SMatthew G. Knepley { 54903e2b0218SMatthew G. Knepley const PetscInt *cone; 54913e2b0218SMatthew G. Knepley PetscInt c; 54923e2b0218SMatthew G. Knepley 54933e2b0218SMatthew G. Knepley locS[1] = locS[0] = locS[2]; 54943e2b0218SMatthew G. Knepley dmScale[1] = dmScale[0] = dmScale[2]; 54953e2b0218SMatthew G. Knepley PetscCall(DMPlexGetCone(dm, cellStart, &cone)); 54963e2b0218SMatthew G. Knepley for (c = 0; c < 2; ++c) { 54973e2b0218SMatthew G. Knepley const PetscInt *support; 54983e2b0218SMatthew G. Knepley PetscInt ssize, s; 54993e2b0218SMatthew G. Knepley 55003e2b0218SMatthew G. Knepley PetscCall(DMPlexGetSupport(dm, cone[c], &support)); 55013e2b0218SMatthew G. Knepley PetscCall(DMPlexGetSupportSize(dm, cone[c], &ssize)); 55023e2b0218SMatthew G. Knepley PetscCheck(ssize == 2, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Face %" PetscInt_FMT " from cell %" PetscInt_FMT " has support size %" PetscInt_FMT " != 2", cone[c], cellStart, ssize); 55033e2b0218SMatthew G. Knepley if (support[0] == cellStart) s = 1; 55043e2b0218SMatthew G. Knepley else if (support[1] == cellStart) s = 0; 55053e2b0218SMatthew G. Knepley else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Face %" PetscInt_FMT " does not have cell %" PetscInt_FMT " in its support", cone[c], cellStart); 55063e2b0218SMatthew G. Knepley PetscCall(DMGetCellDS(dmScale[c], support[s], &dsScale[c], NULL)); 55073e2b0218SMatthew G. Knepley PetscCall(PetscDSGetTotalDimension(dsScale[c], &totDimScale[c])); 55083e2b0218SMatthew G. Knepley } 55093e2b0218SMatthew G. Knepley } 551007218a29SMatthew G. Knepley } 55113e9753d6SMatthew G. Knepley /* 2: Setup geometric data */ 55129566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateField(dm, &coordField)); 55139566063dSJacob Faibussowitsch PetscCall(DMFieldGetDegree(coordField, cellIS, NULL, &maxDegree)); 55143e9753d6SMatthew G. Knepley if (maxDegree > 1) { 55159566063dSJacob Faibussowitsch PetscCall(PetscCalloc2(Nf, &quads, Nf, &geoms)); 55163e9753d6SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 55173e9753d6SMatthew G. Knepley PetscFE fe; 55183e9753d6SMatthew G. Knepley 55199566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(ds, f, (PetscObject *)&fe)); 55203e9753d6SMatthew G. Knepley if (fe) { 55219566063dSJacob Faibussowitsch PetscCall(PetscFEGetQuadrature(fe, &quads[f])); 55229566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)quads[f])); 55233e9753d6SMatthew G. Knepley } 55243e9753d6SMatthew G. Knepley } 55253e9753d6SMatthew G. Knepley } 55263e9753d6SMatthew G. Knepley /* Loop over chunks */ 55273e9753d6SMatthew G. Knepley cellChunkSize = numCells; 55283e9753d6SMatthew G. Knepley numChunks = !numCells ? 0 : PetscCeilReal(((PetscReal)numCells) / cellChunkSize); 552907218a29SMatthew G. Knepley PetscCall(PetscCalloc1(2 * cellChunkSize, &faces)); 553007218a29SMatthew G. Knepley PetscCall(ISCreateGeneral(PETSC_COMM_SELF, 2 * cellChunkSize, faces, PETSC_USE_POINTER, &chunkIS)); 55313e9753d6SMatthew G. Knepley /* Extract field coefficients */ 55323e9753d6SMatthew G. Knepley /* NOTE This needs the end cap faces to have identical orientations */ 553307218a29SMatthew G. Knepley PetscCall(DMPlexGetHybridCellFields(dm, cellIS, locX, locX_t, locA[2], &u, &u_t, &a[2])); 553407218a29SMatthew G. Knepley PetscCall(DMPlexGetHybridFields(dm, dmAux, dsAux, cellIS, locA, PETSC_TRUE, a)); 55353e2b0218SMatthew G. Knepley PetscCall(DMPlexGetHybridFields(dm, dmScale, dsScale, cellIS, locS, PETSC_TRUE, s)); 553607218a29SMatthew G. Knepley PetscCall(DMGetWorkArray(dm, cellChunkSize * totDim, MPIU_SCALAR, &elemVecNeg)); 553707218a29SMatthew G. Knepley PetscCall(DMGetWorkArray(dm, cellChunkSize * totDim, MPIU_SCALAR, &elemVecPos)); 553807218a29SMatthew G. Knepley PetscCall(DMGetWorkArray(dm, cellChunkSize * totDim, MPIU_SCALAR, &elemVecCoh)); 55393e9753d6SMatthew G. Knepley for (chunk = 0; chunk < numChunks; ++chunk) { 55403e9753d6SMatthew G. Knepley PetscInt cS = cStart + chunk * cellChunkSize, cE = PetscMin(cS + cellChunkSize, cEnd), numCells = cE - cS, c; 55413e9753d6SMatthew G. Knepley 554207218a29SMatthew G. Knepley PetscCall(PetscArrayzero(elemVecNeg, cellChunkSize * totDim)); 554307218a29SMatthew G. Knepley PetscCall(PetscArrayzero(elemVecPos, cellChunkSize * totDim)); 554407218a29SMatthew G. Knepley PetscCall(PetscArrayzero(elemVecCoh, cellChunkSize * totDim)); 55453e9753d6SMatthew G. Knepley /* Get faces */ 55463e9753d6SMatthew G. Knepley for (c = cS; c < cE; ++c) { 55473e9753d6SMatthew G. Knepley const PetscInt cell = cells ? cells[c] : c; 55483e9753d6SMatthew G. Knepley const PetscInt *cone; 55499566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, cell, &cone)); 555007218a29SMatthew G. Knepley faces[(c - cS) * 2 + 0] = cone[0]; 555107218a29SMatthew G. Knepley faces[(c - cS) * 2 + 1] = cone[1]; 55523e9753d6SMatthew G. Knepley } 555307218a29SMatthew G. Knepley PetscCall(ISGeneralSetIndices(chunkIS, 2 * cellChunkSize, faces, PETSC_USE_POINTER)); 55543e9753d6SMatthew G. Knepley /* Get geometric data */ 55553e9753d6SMatthew G. Knepley if (maxDegree <= 1) { 55569566063dSJacob Faibussowitsch if (!affineQuad) PetscCall(DMFieldCreateDefaultQuadrature(coordField, chunkIS, &affineQuad)); 55579566063dSJacob Faibussowitsch if (affineQuad) PetscCall(DMSNESGetFEGeom(coordField, chunkIS, affineQuad, PETSC_TRUE, &affineGeom)); 55583e9753d6SMatthew G. Knepley } else { 55593e9753d6SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 55609566063dSJacob Faibussowitsch if (quads[f]) PetscCall(DMSNESGetFEGeom(coordField, chunkIS, quads[f], PETSC_TRUE, &geoms[f])); 55613e9753d6SMatthew G. Knepley } 55623e9753d6SMatthew G. Knepley } 55633e9753d6SMatthew G. Knepley /* Loop over fields */ 55643e9753d6SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 55653e9753d6SMatthew G. Knepley PetscFE fe; 55663e9753d6SMatthew G. Knepley PetscFEGeom *geom = affineGeom ? affineGeom : geoms[f]; 5567148442b3SMatthew G. Knepley PetscFEGeom *chunkGeom = NULL, *remGeom = NULL; 55683e9753d6SMatthew G. Knepley PetscQuadrature quad = affineQuad ? affineQuad : quads[f]; 55693e9753d6SMatthew G. Knepley PetscInt numChunks, numBatches, batchSize, numBlocks, blockSize, Ne, Nr, offset, Nq, Nb; 55705fedec97SMatthew G. Knepley PetscBool isCohesiveField; 55713e9753d6SMatthew G. Knepley 55729566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(ds, f, (PetscObject *)&fe)); 55733e9753d6SMatthew G. Knepley if (!fe) continue; 55749566063dSJacob Faibussowitsch PetscCall(PetscFEGetTileSizes(fe, NULL, &numBlocks, NULL, &numBatches)); 55759566063dSJacob Faibussowitsch PetscCall(PetscQuadratureGetData(quad, NULL, NULL, &Nq, NULL, NULL)); 55769566063dSJacob Faibussowitsch PetscCall(PetscFEGetDimension(fe, &Nb)); 55773e9753d6SMatthew G. Knepley blockSize = Nb; 55783e9753d6SMatthew G. Knepley batchSize = numBlocks * blockSize; 55799566063dSJacob Faibussowitsch PetscCall(PetscFESetTileSizes(fe, blockSize, numBlocks, batchSize, numBatches)); 55803e9753d6SMatthew G. Knepley numChunks = numCells / (numBatches * batchSize); 55813e9753d6SMatthew G. Knepley Ne = numChunks * numBatches * batchSize; 55823e9753d6SMatthew G. Knepley Nr = numCells % (numBatches * batchSize); 55833e9753d6SMatthew G. Knepley offset = numCells - Nr; 558407218a29SMatthew G. Knepley PetscCall(PetscFEGeomGetChunk(geom, 0, offset * 2, &chunkGeom)); 558507218a29SMatthew G. Knepley PetscCall(PetscFEGeomGetChunk(geom, offset * 2, numCells * 2, &remGeom)); 55869566063dSJacob Faibussowitsch PetscCall(PetscDSGetCohesive(ds, f, &isCohesiveField)); 55875fedec97SMatthew G. Knepley chunkGeom->isCohesive = remGeom->isCohesive = PETSC_TRUE; 55886528b96dSMatthew G. Knepley key[0].field = f; 55896528b96dSMatthew G. Knepley key[1].field = f; 55905fedec97SMatthew G. Knepley key[2].field = f; 559107218a29SMatthew G. Knepley PetscCall(PetscFEIntegrateHybridResidual(ds, dsIn, key[0], 0, Ne, chunkGeom, u, u_t, dsAux[0], a[0], t, elemVecNeg)); 55928e3a54c0SPierre Jolivet PetscCall(PetscFEIntegrateHybridResidual(ds, dsIn, key[0], 0, Nr, remGeom, &u[offset * totDimIn], PetscSafePointerPlusOffset(u_t, offset * totDimIn), dsAux[0], PetscSafePointerPlusOffset(a[0], offset * totDimAux[0]), t, &elemVecNeg[offset * totDim])); 559307218a29SMatthew G. Knepley PetscCall(PetscFEIntegrateHybridResidual(ds, dsIn, key[1], 1, Ne, chunkGeom, u, u_t, dsAux[1], a[1], t, elemVecPos)); 55948e3a54c0SPierre Jolivet PetscCall(PetscFEIntegrateHybridResidual(ds, dsIn, key[1], 1, Nr, remGeom, &u[offset * totDimIn], PetscSafePointerPlusOffset(u_t, offset * totDimIn), dsAux[1], PetscSafePointerPlusOffset(a[1], offset * totDimAux[1]), t, &elemVecPos[offset * totDim])); 559507218a29SMatthew G. Knepley PetscCall(PetscFEIntegrateHybridResidual(ds, dsIn, key[2], 2, Ne, chunkGeom, u, u_t, dsAux[2], a[2], t, elemVecCoh)); 55968e3a54c0SPierre Jolivet PetscCall(PetscFEIntegrateHybridResidual(ds, dsIn, key[2], 2, Nr, remGeom, &u[offset * totDimIn], PetscSafePointerPlusOffset(u_t, offset * totDimIn), dsAux[2], PetscSafePointerPlusOffset(a[2], offset * totDimAux[2]), t, &elemVecCoh[offset * totDim])); 55979566063dSJacob Faibussowitsch PetscCall(PetscFEGeomRestoreChunk(geom, offset, numCells, &remGeom)); 55989566063dSJacob Faibussowitsch PetscCall(PetscFEGeomRestoreChunk(geom, 0, offset, &chunkGeom)); 55993e9753d6SMatthew G. Knepley } 56003e9753d6SMatthew G. Knepley /* Add elemVec to locX */ 56013e9753d6SMatthew G. Knepley for (c = cS; c < cE; ++c) { 56023e9753d6SMatthew G. Knepley const PetscInt cell = cells ? cells[c] : c; 56033e9753d6SMatthew G. Knepley const PetscInt cind = c - cStart; 560407218a29SMatthew G. Knepley PetscInt i; 56053e9753d6SMatthew G. Knepley 560607218a29SMatthew G. Knepley /* Scale element values */ 560707218a29SMatthew G. Knepley if (locS[0]) { 56083e2b0218SMatthew G. Knepley PetscInt Nb, off = cind * totDim, soff = cind * totDimScale[0]; 560907218a29SMatthew G. Knepley PetscBool cohesive; 561007218a29SMatthew G. Knepley 561107218a29SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 561207218a29SMatthew G. Knepley PetscCall(PetscDSGetFieldSize(ds, f, &Nb)); 561307218a29SMatthew G. Knepley PetscCall(PetscDSGetCohesive(ds, f, &cohesive)); 561407218a29SMatthew G. Knepley if (f == key[2].field) { 561507218a29SMatthew G. Knepley PetscCheck(cohesive, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Scaling should not happen for face fields"); 561607218a29SMatthew G. Knepley // No cohesive scaling field is currently input 561707218a29SMatthew G. Knepley for (i = 0; i < Nb; ++i) elemVecCoh[off + i] += s[0][soff + i] * elemVecNeg[off + i] + s[1][soff + i] * elemVecPos[off + i]; 561807218a29SMatthew G. Knepley off += Nb; 561907218a29SMatthew G. Knepley } else { 562007218a29SMatthew G. Knepley const PetscInt N = cohesive ? Nb : Nb * 2; 562107218a29SMatthew G. Knepley 562207218a29SMatthew G. Knepley for (i = 0; i < N; ++i) elemVecCoh[off + i] += elemVecNeg[off + i] + elemVecPos[off + i]; 562307218a29SMatthew G. Knepley off += N; 562407218a29SMatthew G. Knepley } 562507218a29SMatthew G. Knepley } 562607218a29SMatthew G. Knepley } else { 562707218a29SMatthew G. Knepley for (i = cind * totDim; i < (cind + 1) * totDim; ++i) elemVecCoh[i] += elemVecNeg[i] + elemVecPos[i]; 562807218a29SMatthew G. Knepley } 562907218a29SMatthew G. Knepley if (mesh->printFEM > 1) PetscCall(DMPrintCellVector(cell, name, totDim, &elemVecCoh[cind * totDim])); 56303e9753d6SMatthew G. Knepley if (ghostLabel) { 56313e9753d6SMatthew G. Knepley PetscInt ghostVal; 56323e9753d6SMatthew G. Knepley 56339566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(ghostLabel, cell, &ghostVal)); 56343e9753d6SMatthew G. Knepley if (ghostVal > 0) continue; 56353e9753d6SMatthew G. Knepley } 563607218a29SMatthew G. Knepley PetscCall(DMPlexVecSetClosure(dm, section, locF, cell, &elemVecCoh[cind * totDim], ADD_ALL_VALUES)); 56373e9753d6SMatthew G. Knepley } 56383e9753d6SMatthew G. Knepley } 56399566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreCellFields(dm, cellIS, locX, locX_t, locA[2], &u, &u_t, &a[2])); 564007218a29SMatthew G. Knepley PetscCall(DMPlexRestoreHybridFields(dm, dmAux, dsAux, cellIS, locA, PETSC_TRUE, a)); 56413e2b0218SMatthew G. Knepley PetscCall(DMPlexRestoreHybridFields(dm, dmScale, dsScale, cellIS, locS, PETSC_TRUE, s)); 564207218a29SMatthew G. Knepley PetscCall(DMRestoreWorkArray(dm, numCells * totDim, MPIU_SCALAR, &elemVecNeg)); 564307218a29SMatthew G. Knepley PetscCall(DMRestoreWorkArray(dm, numCells * totDim, MPIU_SCALAR, &elemVecPos)); 564407218a29SMatthew G. Knepley PetscCall(DMRestoreWorkArray(dm, numCells * totDim, MPIU_SCALAR, &elemVecCoh)); 56459566063dSJacob Faibussowitsch PetscCall(PetscFree(faces)); 56469566063dSJacob Faibussowitsch PetscCall(ISDestroy(&chunkIS)); 56479566063dSJacob Faibussowitsch PetscCall(ISRestorePointRange(cellIS, &cStart, &cEnd, &cells)); 56483e9753d6SMatthew G. Knepley if (maxDegree <= 1) { 56499566063dSJacob Faibussowitsch PetscCall(DMSNESRestoreFEGeom(coordField, cellIS, affineQuad, PETSC_FALSE, &affineGeom)); 56509566063dSJacob Faibussowitsch PetscCall(PetscQuadratureDestroy(&affineQuad)); 56513e9753d6SMatthew G. Knepley } else { 56523e9753d6SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 56539566063dSJacob Faibussowitsch if (geoms) PetscCall(DMSNESRestoreFEGeom(coordField, cellIS, quads[f], PETSC_FALSE, &geoms[f])); 56549566063dSJacob Faibussowitsch if (quads) PetscCall(PetscQuadratureDestroy(&quads[f])); 56553e9753d6SMatthew G. Knepley } 56569566063dSJacob Faibussowitsch PetscCall(PetscFree2(quads, geoms)); 56573e9753d6SMatthew G. Knepley } 565885cc2951SMatthew G. Knepley if (mesh->printFEM) { 565985cc2951SMatthew G. Knepley Vec locFbc; 566085cc2951SMatthew G. Knepley PetscInt pStart, pEnd, p, maxDof; 566185cc2951SMatthew G. Knepley PetscScalar *zeroes; 566285cc2951SMatthew G. Knepley 566385cc2951SMatthew G. Knepley PetscCall(VecDuplicate(locF, &locFbc)); 566485cc2951SMatthew G. Knepley PetscCall(VecCopy(locF, locFbc)); 566585cc2951SMatthew G. Knepley PetscCall(PetscSectionGetChart(section, &pStart, &pEnd)); 566685cc2951SMatthew G. Knepley PetscCall(PetscSectionGetMaxDof(section, &maxDof)); 566785cc2951SMatthew G. Knepley PetscCall(PetscCalloc1(maxDof, &zeroes)); 566885cc2951SMatthew G. Knepley for (p = pStart; p < pEnd; p++) PetscCall(VecSetValuesSection(locFbc, section, p, zeroes, INSERT_BC_VALUES)); 566985cc2951SMatthew G. Knepley PetscCall(PetscFree(zeroes)); 567085cc2951SMatthew G. Knepley PetscCall(DMPrintLocalVec(dm, name, mesh->printTol, locFbc)); 567185cc2951SMatthew G. Knepley PetscCall(VecDestroy(&locFbc)); 567285cc2951SMatthew G. Knepley } 56733cc88e6aSStefano Zampini end: 56749566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DMPLEX_ResidualFEM, dm, 0, 0, 0)); 56753ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 56763e9753d6SMatthew G. Knepley } 56773e9753d6SMatthew G. Knepley 5678a4e35b19SJacob Faibussowitsch static PetscErrorCode DMPlexComputeBdJacobian_Single_Internal(DM dm, PetscReal t, PetscWeakForm wf, DMLabel label, PetscInt numValues, const PetscInt values[], PetscInt fieldI, Vec locX, Vec locX_t, PetscReal X_tShift, Mat Jac, Mat JacP, DMField coordField, IS facetIS) 5679d71ae5a4SJacob Faibussowitsch { 56803e9753d6SMatthew G. Knepley DM_Plex *mesh = (DM_Plex *)dm->data; 56813e9753d6SMatthew G. Knepley DM plex = NULL, plexA = NULL, tdm; 56823e9753d6SMatthew G. Knepley DMEnclosureType encAux; 5683be62b2b4SMatthew G. Knepley PetscDS ds, dsAux = NULL; 56843e9753d6SMatthew G. Knepley PetscSection section, sectionAux = NULL; 5685e432b41dSStefano Zampini PetscSection globalSection; 56863e9753d6SMatthew G. Knepley Vec locA = NULL, tv; 5687be62b2b4SMatthew G. Knepley PetscScalar *u = NULL, *u_t = NULL, *a = NULL, *elemMat = NULL, *elemMatP = NULL; 56883e9753d6SMatthew G. Knepley PetscInt v; 56893e9753d6SMatthew G. Knepley PetscInt Nf, totDim, totDimAux = 0; 5690be62b2b4SMatthew G. Knepley PetscBool hasJac = PETSC_FALSE, hasPrec = PETSC_FALSE, transform; 56913e9753d6SMatthew G. Knepley 56923e9753d6SMatthew G. Knepley PetscFunctionBegin; 56939566063dSJacob Faibussowitsch PetscCall(DMHasBasisTransform(dm, &transform)); 56949566063dSJacob Faibussowitsch PetscCall(DMGetBasisTransformDM_Internal(dm, &tdm)); 56959566063dSJacob Faibussowitsch PetscCall(DMGetBasisTransformVec_Internal(dm, &tv)); 56969566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, §ion)); 5697be62b2b4SMatthew G. Knepley PetscCall(DMGetDS(dm, &ds)); 5698be62b2b4SMatthew G. Knepley PetscCall(PetscDSGetNumFields(ds, &Nf)); 5699be62b2b4SMatthew G. Knepley PetscCall(PetscDSGetTotalDimension(ds, &totDim)); 570021a4fad8SMatthew G. Knepley PetscCall(PetscWeakFormHasBdJacobian(wf, &hasJac)); 570121a4fad8SMatthew G. Knepley PetscCall(PetscWeakFormHasBdJacobianPreconditioner(wf, &hasPrec)); 570221a4fad8SMatthew G. Knepley if (!hasJac && !hasPrec) PetscFunctionReturn(PETSC_SUCCESS); 570321a4fad8SMatthew G. Knepley PetscCall(DMConvert(dm, DMPLEX, &plex)); 57049566063dSJacob Faibussowitsch PetscCall(DMGetAuxiliaryVec(dm, label, values[0], 0, &locA)); 57053e9753d6SMatthew G. Knepley if (locA) { 57063e9753d6SMatthew G. Knepley DM dmAux; 57073e9753d6SMatthew G. Knepley 57089566063dSJacob Faibussowitsch PetscCall(VecGetDM(locA, &dmAux)); 57099566063dSJacob Faibussowitsch PetscCall(DMGetEnclosureRelation(dmAux, dm, &encAux)); 57109566063dSJacob Faibussowitsch PetscCall(DMConvert(dmAux, DMPLEX, &plexA)); 5711be62b2b4SMatthew G. Knepley PetscCall(DMGetDS(plexA, &dsAux)); 5712be62b2b4SMatthew G. Knepley PetscCall(PetscDSGetTotalDimension(dsAux, &totDimAux)); 57139566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(plexA, §ionAux)); 57143e9753d6SMatthew G. Knepley } 57153e9753d6SMatthew G. Knepley 57169566063dSJacob Faibussowitsch PetscCall(DMGetGlobalSection(dm, &globalSection)); 57173e9753d6SMatthew G. Knepley for (v = 0; v < numValues; ++v) { 57183e9753d6SMatthew G. Knepley PetscFEGeom *fgeom; 57193e9753d6SMatthew G. Knepley PetscInt maxDegree; 57203e9753d6SMatthew G. Knepley PetscQuadrature qGeom = NULL; 57213e9753d6SMatthew G. Knepley IS pointIS; 57223e9753d6SMatthew G. Knepley const PetscInt *points; 572306ad1575SMatthew G. Knepley PetscFormKey key; 57243e9753d6SMatthew G. Knepley PetscInt numFaces, face, Nq; 57253e9753d6SMatthew G. Knepley 572645480ffeSMatthew G. Knepley key.label = label; 572745480ffeSMatthew G. Knepley key.value = values[v]; 572806ad1575SMatthew G. Knepley key.part = 0; 57299566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(label, values[v], &pointIS)); 57303e9753d6SMatthew G. Knepley if (!pointIS) continue; /* No points with that id on this process */ 57313e9753d6SMatthew G. Knepley { 57323e9753d6SMatthew G. Knepley IS isectIS; 57333e9753d6SMatthew G. Knepley 57343e9753d6SMatthew G. Knepley /* TODO: Special cases of ISIntersect where it is quick to check a prior if one is a superset of the other */ 57359566063dSJacob Faibussowitsch PetscCall(ISIntersect_Caching_Internal(facetIS, pointIS, &isectIS)); 57369566063dSJacob Faibussowitsch PetscCall(ISDestroy(&pointIS)); 57373e9753d6SMatthew G. Knepley pointIS = isectIS; 57383e9753d6SMatthew G. Knepley } 57399566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(pointIS, &numFaces)); 57409566063dSJacob Faibussowitsch PetscCall(ISGetIndices(pointIS, &points)); 5741be62b2b4SMatthew G. Knepley PetscCall(PetscMalloc5(numFaces * totDim, &u, locX_t ? numFaces * totDim : 0, &u_t, hasJac ? numFaces * totDim * totDim : 0, &elemMat, hasPrec ? numFaces * totDim * totDim : 0, &elemMatP, locA ? numFaces * totDimAux : 0, &a)); 57429566063dSJacob Faibussowitsch PetscCall(DMFieldGetDegree(coordField, pointIS, NULL, &maxDegree)); 574348a46eb9SPierre Jolivet if (maxDegree <= 1) PetscCall(DMFieldCreateDefaultQuadrature(coordField, pointIS, &qGeom)); 57443e9753d6SMatthew G. Knepley if (!qGeom) { 57453e9753d6SMatthew G. Knepley PetscFE fe; 57463e9753d6SMatthew G. Knepley 5747be62b2b4SMatthew G. Knepley PetscCall(PetscDSGetDiscretization(ds, fieldI, (PetscObject *)&fe)); 57489566063dSJacob Faibussowitsch PetscCall(PetscFEGetFaceQuadrature(fe, &qGeom)); 57499566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)qGeom)); 57503e9753d6SMatthew G. Knepley } 57519566063dSJacob Faibussowitsch PetscCall(PetscQuadratureGetData(qGeom, NULL, NULL, &Nq, NULL, NULL)); 57529566063dSJacob Faibussowitsch PetscCall(DMSNESGetFEGeom(coordField, pointIS, qGeom, PETSC_TRUE, &fgeom)); 57533e9753d6SMatthew G. Knepley for (face = 0; face < numFaces; ++face) { 5754f15274beSMatthew Knepley const PetscInt point = points[face], *support; 57553e9753d6SMatthew G. Knepley PetscScalar *x = NULL; 5756f15274beSMatthew Knepley PetscInt i; 57573e9753d6SMatthew G. Knepley 57589566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(dm, point, &support)); 57599566063dSJacob Faibussowitsch PetscCall(DMPlexVecGetClosure(plex, section, locX, support[0], NULL, &x)); 57603e9753d6SMatthew G. Knepley for (i = 0; i < totDim; ++i) u[face * totDim + i] = x[i]; 57619566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(plex, section, locX, support[0], NULL, &x)); 57623e9753d6SMatthew G. Knepley if (locX_t) { 57639566063dSJacob Faibussowitsch PetscCall(DMPlexVecGetClosure(plex, section, locX_t, support[0], NULL, &x)); 57643e9753d6SMatthew G. Knepley for (i = 0; i < totDim; ++i) u_t[face * totDim + i] = x[i]; 57659566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(plex, section, locX_t, support[0], NULL, &x)); 57663e9753d6SMatthew G. Knepley } 57673e9753d6SMatthew G. Knepley if (locA) { 57683e9753d6SMatthew G. Knepley PetscInt subp; 57699566063dSJacob Faibussowitsch PetscCall(DMGetEnclosurePoint(plexA, dm, encAux, support[0], &subp)); 57709566063dSJacob Faibussowitsch PetscCall(DMPlexVecGetClosure(plexA, sectionAux, locA, subp, NULL, &x)); 57713e9753d6SMatthew G. Knepley for (i = 0; i < totDimAux; ++i) a[face * totDimAux + i] = x[i]; 57729566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(plexA, sectionAux, locA, subp, NULL, &x)); 57733e9753d6SMatthew G. Knepley } 57743e9753d6SMatthew G. Knepley } 577521a4fad8SMatthew G. Knepley if (elemMat) PetscCall(PetscArrayzero(elemMat, numFaces * totDim * totDim)); 577621a4fad8SMatthew G. Knepley if (elemMatP) PetscCall(PetscArrayzero(elemMatP, numFaces * totDim * totDim)); 57773e9753d6SMatthew G. Knepley { 57783e9753d6SMatthew G. Knepley PetscFE fe; 57793e9753d6SMatthew G. Knepley PetscInt Nb; 57803e9753d6SMatthew G. Knepley /* Conforming batches */ 57813e9753d6SMatthew G. Knepley PetscInt numChunks, numBatches, numBlocks, Ne, blockSize, batchSize; 57823e9753d6SMatthew G. Knepley /* Remainder */ 57833e9753d6SMatthew G. Knepley PetscFEGeom *chunkGeom = NULL; 57843e9753d6SMatthew G. Knepley PetscInt fieldJ, Nr, offset; 57853e9753d6SMatthew G. Knepley 5786be62b2b4SMatthew G. Knepley PetscCall(PetscDSGetDiscretization(ds, fieldI, (PetscObject *)&fe)); 57879566063dSJacob Faibussowitsch PetscCall(PetscFEGetDimension(fe, &Nb)); 57889566063dSJacob Faibussowitsch PetscCall(PetscFEGetTileSizes(fe, NULL, &numBlocks, NULL, &numBatches)); 57893e9753d6SMatthew G. Knepley blockSize = Nb; 57903e9753d6SMatthew G. Knepley batchSize = numBlocks * blockSize; 57919566063dSJacob Faibussowitsch PetscCall(PetscFESetTileSizes(fe, blockSize, numBlocks, batchSize, numBatches)); 57923e9753d6SMatthew G. Knepley numChunks = numFaces / (numBatches * batchSize); 57933e9753d6SMatthew G. Knepley Ne = numChunks * numBatches * batchSize; 57943e9753d6SMatthew G. Knepley Nr = numFaces % (numBatches * batchSize); 57953e9753d6SMatthew G. Knepley offset = numFaces - Nr; 57969566063dSJacob Faibussowitsch PetscCall(PetscFEGeomGetChunk(fgeom, 0, offset, &chunkGeom)); 57973e9753d6SMatthew G. Knepley for (fieldJ = 0; fieldJ < Nf; ++fieldJ) { 579845480ffeSMatthew G. Knepley key.field = fieldI * Nf + fieldJ; 5799be62b2b4SMatthew G. Knepley if (hasJac) PetscCall(PetscFEIntegrateBdJacobian(ds, wf, PETSCFE_JACOBIAN, key, Ne, chunkGeom, u, u_t, dsAux, a, t, X_tShift, elemMat)); 5800be62b2b4SMatthew G. Knepley if (hasPrec) PetscCall(PetscFEIntegrateBdJacobian(ds, wf, PETSCFE_JACOBIAN_PRE, key, Ne, chunkGeom, u, u_t, dsAux, a, t, X_tShift, elemMatP)); 58013e9753d6SMatthew G. Knepley } 58029566063dSJacob Faibussowitsch PetscCall(PetscFEGeomGetChunk(fgeom, offset, numFaces, &chunkGeom)); 58033e9753d6SMatthew G. Knepley for (fieldJ = 0; fieldJ < Nf; ++fieldJ) { 580445480ffeSMatthew G. Knepley key.field = fieldI * Nf + fieldJ; 5805be62b2b4SMatthew G. Knepley if (hasJac) 58068e3a54c0SPierre Jolivet PetscCall(PetscFEIntegrateBdJacobian(ds, wf, PETSCFE_JACOBIAN, key, Nr, chunkGeom, &u[offset * totDim], PetscSafePointerPlusOffset(u_t, offset * totDim), dsAux, PetscSafePointerPlusOffset(a, offset * totDimAux), t, X_tShift, &elemMat[offset * totDim * totDim])); 5807be62b2b4SMatthew G. Knepley if (hasPrec) 58088e3a54c0SPierre Jolivet PetscCall(PetscFEIntegrateBdJacobian(ds, wf, PETSCFE_JACOBIAN_PRE, key, Nr, chunkGeom, &u[offset * totDim], PetscSafePointerPlusOffset(u_t, offset * totDim), dsAux, PetscSafePointerPlusOffset(a, offset * totDimAux), t, X_tShift, &elemMatP[offset * totDim * totDim])); 58093e9753d6SMatthew G. Knepley } 58109566063dSJacob Faibussowitsch PetscCall(PetscFEGeomRestoreChunk(fgeom, offset, numFaces, &chunkGeom)); 58113e9753d6SMatthew G. Knepley } 58123e9753d6SMatthew G. Knepley for (face = 0; face < numFaces; ++face) { 58133e9753d6SMatthew G. Knepley const PetscInt point = points[face], *support; 58143e9753d6SMatthew G. Knepley 58153e9753d6SMatthew G. Knepley /* Transform to global basis before insertion in Jacobian */ 58169566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(plex, point, &support)); 581721a4fad8SMatthew G. Knepley if (hasJac && transform) PetscCall(DMPlexBasisTransformPointTensor_Internal(dm, tdm, tv, support[0], PETSC_TRUE, totDim, &elemMat[face * totDim * totDim])); 581821a4fad8SMatthew G. Knepley if (hasPrec && transform) PetscCall(DMPlexBasisTransformPointTensor_Internal(dm, tdm, tv, support[0], PETSC_TRUE, totDim, &elemMatP[face * totDim * totDim])); 5819be62b2b4SMatthew G. Knepley if (hasPrec) { 5820be62b2b4SMatthew G. Knepley if (hasJac) { 58219566063dSJacob Faibussowitsch if (mesh->printFEM > 1) PetscCall(DMPrintCellMatrix(point, "BdJacobian", totDim, totDim, &elemMat[face * totDim * totDim])); 582221a4fad8SMatthew G. Knepley PetscCall(DMPlexMatSetClosure_Internal(plex, section, globalSection, mesh->useMatClPerm, Jac, support[0], &elemMat[face * totDim * totDim], ADD_VALUES)); 58233e9753d6SMatthew G. Knepley } 5824be62b2b4SMatthew G. Knepley if (mesh->printFEM > 1) PetscCall(DMPrintCellMatrix(point, "BdJacobian", totDim, totDim, &elemMatP[face * totDim * totDim])); 5825be62b2b4SMatthew G. Knepley PetscCall(DMPlexMatSetClosure_Internal(plex, section, globalSection, mesh->useMatClPerm, JacP, support[0], &elemMatP[face * totDim * totDim], ADD_VALUES)); 5826be62b2b4SMatthew G. Knepley } else { 5827be62b2b4SMatthew G. Knepley if (hasJac) { 5828be62b2b4SMatthew G. Knepley if (mesh->printFEM > 1) PetscCall(DMPrintCellMatrix(point, "BdJacobian", totDim, totDim, &elemMat[face * totDim * totDim])); 582921a4fad8SMatthew G. Knepley PetscCall(DMPlexMatSetClosure_Internal(plex, section, globalSection, mesh->useMatClPerm, Jac, support[0], &elemMat[face * totDim * totDim], ADD_VALUES)); 5830be62b2b4SMatthew G. Knepley } 5831be62b2b4SMatthew G. Knepley } 5832be62b2b4SMatthew G. Knepley } 58339566063dSJacob Faibussowitsch PetscCall(DMSNESRestoreFEGeom(coordField, pointIS, qGeom, PETSC_TRUE, &fgeom)); 58349566063dSJacob Faibussowitsch PetscCall(PetscQuadratureDestroy(&qGeom)); 58359566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(pointIS, &points)); 58369566063dSJacob Faibussowitsch PetscCall(ISDestroy(&pointIS)); 5837be62b2b4SMatthew G. Knepley PetscCall(PetscFree5(u, u_t, elemMat, elemMatP, a)); 58383e9753d6SMatthew G. Knepley } 58399566063dSJacob Faibussowitsch if (plex) PetscCall(DMDestroy(&plex)); 58409566063dSJacob Faibussowitsch if (plexA) PetscCall(DMDestroy(&plexA)); 58413ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 58423e9753d6SMatthew G. Knepley } 58433e9753d6SMatthew G. Knepley 5844d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeBdJacobianSingle(DM dm, PetscReal t, PetscWeakForm wf, DMLabel label, PetscInt numValues, const PetscInt values[], PetscInt field, Vec locX, Vec locX_t, PetscReal X_tShift, Mat Jac, Mat JacP) 5845d71ae5a4SJacob Faibussowitsch { 58463e9753d6SMatthew G. Knepley DMField coordField; 58473e9753d6SMatthew G. Knepley DMLabel depthLabel; 58483e9753d6SMatthew G. Knepley IS facetIS; 58493e9753d6SMatthew G. Knepley PetscInt dim; 58503e9753d6SMatthew G. Knepley 58513e9753d6SMatthew G. Knepley PetscFunctionBegin; 58529566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 58539566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthLabel(dm, &depthLabel)); 58549566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(depthLabel, dim - 1, &facetIS)); 58559566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateField(dm, &coordField)); 58569566063dSJacob Faibussowitsch PetscCall(DMPlexComputeBdJacobian_Single_Internal(dm, t, wf, label, numValues, values, field, locX, locX_t, X_tShift, Jac, JacP, coordField, facetIS)); 58579566063dSJacob Faibussowitsch PetscCall(ISDestroy(&facetIS)); 58583ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 58593e9753d6SMatthew G. Knepley } 58603e9753d6SMatthew G. Knepley 5861a4e35b19SJacob Faibussowitsch static PetscErrorCode DMPlexComputeBdJacobian_Internal(DM dm, Vec locX, Vec locX_t, PetscReal t, PetscReal X_tShift, Mat Jac, Mat JacP, void *user) 5862d71ae5a4SJacob Faibussowitsch { 58633e9753d6SMatthew G. Knepley PetscDS prob; 58643e9753d6SMatthew G. Knepley PetscInt dim, numBd, bd; 58653e9753d6SMatthew G. Knepley DMLabel depthLabel; 58663e9753d6SMatthew G. Knepley DMField coordField = NULL; 58673e9753d6SMatthew G. Knepley IS facetIS; 58683e9753d6SMatthew G. Knepley 58693e9753d6SMatthew G. Knepley PetscFunctionBegin; 58709566063dSJacob Faibussowitsch PetscCall(DMGetDS(dm, &prob)); 58719566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthLabel(dm, &depthLabel)); 58729566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 58739566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(depthLabel, dim - 1, &facetIS)); 58749566063dSJacob Faibussowitsch PetscCall(PetscDSGetNumBoundary(prob, &numBd)); 58759566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateField(dm, &coordField)); 58763e9753d6SMatthew G. Knepley for (bd = 0; bd < numBd; ++bd) { 587745480ffeSMatthew G. Knepley PetscWeakForm wf; 58783e9753d6SMatthew G. Knepley DMBoundaryConditionType type; 58793e9753d6SMatthew G. Knepley DMLabel label; 58803e9753d6SMatthew G. Knepley const PetscInt *values; 58813e9753d6SMatthew G. Knepley PetscInt fieldI, numValues; 58823e9753d6SMatthew G. Knepley PetscObject obj; 58833e9753d6SMatthew G. Knepley PetscClassId id; 58843e9753d6SMatthew G. Knepley 58859566063dSJacob Faibussowitsch PetscCall(PetscDSGetBoundary(prob, bd, &wf, &type, NULL, &label, &numValues, &values, &fieldI, NULL, NULL, NULL, NULL, NULL)); 58863d3e5d66SMatthew G. Knepley if (type & DM_BC_ESSENTIAL) continue; 58879566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(prob, fieldI, &obj)); 58889566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 58893d3e5d66SMatthew G. Knepley if (id != PETSCFE_CLASSID) continue; 58909566063dSJacob Faibussowitsch PetscCall(DMPlexComputeBdJacobian_Single_Internal(dm, t, wf, label, numValues, values, fieldI, locX, locX_t, X_tShift, Jac, JacP, coordField, facetIS)); 58913e9753d6SMatthew G. Knepley } 58929566063dSJacob Faibussowitsch PetscCall(ISDestroy(&facetIS)); 58933ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 58943e9753d6SMatthew G. Knepley } 58953e9753d6SMatthew G. Knepley 5896d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeJacobian_Internal(DM dm, PetscFormKey key, IS cellIS, PetscReal t, PetscReal X_tShift, Vec X, Vec X_t, Mat Jac, Mat JacP, void *user) 5897d71ae5a4SJacob Faibussowitsch { 58983e9753d6SMatthew G. Knepley DM_Plex *mesh = (DM_Plex *)dm->data; 58993e9753d6SMatthew G. Knepley const char *name = "Jacobian"; 59009a2a23afSMatthew G. Knepley DM dmAux = NULL, plex, tdm; 59013e9753d6SMatthew G. Knepley DMEnclosureType encAux; 59023e9753d6SMatthew G. Knepley Vec A, tv; 59033e9753d6SMatthew G. Knepley DMField coordField; 59043e9753d6SMatthew G. Knepley PetscDS prob, probAux = NULL; 5905e432b41dSStefano Zampini PetscSection section, globalSection, sectionAux; 59063e9753d6SMatthew G. Knepley PetscScalar *elemMat, *elemMatP, *elemMatD, *u, *u_t, *a = NULL; 59073e9753d6SMatthew G. Knepley const PetscInt *cells; 59083e9753d6SMatthew G. Knepley PetscInt Nf, fieldI, fieldJ; 590928351e22SJed Brown PetscInt totDim, totDimAux = 0, cStart, cEnd, numCells, c; 5910e04ae0b4SMatthew G. Knepley PetscBool hasJac = PETSC_FALSE, hasPrec = PETSC_FALSE, hasDyn, hasFV = PETSC_FALSE, transform; 59113e9753d6SMatthew G. Knepley 59123e9753d6SMatthew G. Knepley PetscFunctionBegin; 5913af18b51aSmarkadams4 PetscCall(PetscLogEventBegin(DMPLEX_JacobianFEM, dm, 0, 0, 0)); 5914ae3cf2c1SStefano Zampini PetscCall(DMGetLocalSection(dm, §ion)); 5915ae3cf2c1SStefano Zampini PetscCall(DMGetGlobalSection(dm, &globalSection)); 5916ae3cf2c1SStefano Zampini PetscCall(DMGetAuxiliaryVec(dm, key.label, key.value, key.part, &A)); 5917ae3cf2c1SStefano Zampini if (A) { 5918ae3cf2c1SStefano Zampini PetscCall(VecGetDM(A, &dmAux)); 5919ae3cf2c1SStefano Zampini PetscCall(DMGetEnclosureRelation(dmAux, dm, &encAux)); 5920ae3cf2c1SStefano Zampini PetscCall(DMConvert(dmAux, DMPLEX, &plex)); 5921ae3cf2c1SStefano Zampini PetscCall(DMGetLocalSection(plex, §ionAux)); 5922ae3cf2c1SStefano Zampini PetscCall(DMGetDS(dmAux, &probAux)); 5923ae3cf2c1SStefano Zampini PetscCall(PetscDSGetTotalDimension(probAux, &totDimAux)); 5924ae3cf2c1SStefano Zampini } 5925ae3cf2c1SStefano Zampini PetscCall(DMGetCoordinateField(dm, &coordField)); 5926e04ae0b4SMatthew G. Knepley if (!cellIS) goto end; 59279566063dSJacob Faibussowitsch PetscCall(ISGetPointRange(cellIS, &cStart, &cEnd, &cells)); 5928437e83fbSMatthew G. Knepley PetscCall(ISGetLocalSize(cellIS, &numCells)); 5929437e83fbSMatthew G. Knepley if (cStart >= cEnd) goto end; 59309566063dSJacob Faibussowitsch PetscCall(DMHasBasisTransform(dm, &transform)); 59319566063dSJacob Faibussowitsch PetscCall(DMGetBasisTransformDM_Internal(dm, &tdm)); 59329566063dSJacob Faibussowitsch PetscCall(DMGetBasisTransformVec_Internal(dm, &tv)); 593307218a29SMatthew G. Knepley PetscCall(DMGetCellDS(dm, cells ? cells[cStart] : cStart, &prob, NULL)); 59349566063dSJacob Faibussowitsch PetscCall(PetscDSGetNumFields(prob, &Nf)); 59359566063dSJacob Faibussowitsch PetscCall(PetscDSGetTotalDimension(prob, &totDim)); 59369566063dSJacob Faibussowitsch PetscCall(PetscDSHasJacobian(prob, &hasJac)); 59379566063dSJacob Faibussowitsch PetscCall(PetscDSHasJacobianPreconditioner(prob, &hasPrec)); 59383e9753d6SMatthew G. Knepley /* user passed in the same matrix, avoid double contributions and 59393e9753d6SMatthew G. Knepley only assemble the Jacobian */ 59403e9753d6SMatthew G. Knepley if (hasJac && Jac == JacP) hasPrec = PETSC_FALSE; 59419566063dSJacob Faibussowitsch PetscCall(PetscDSHasDynamicJacobian(prob, &hasDyn)); 59423e9753d6SMatthew G. Knepley hasDyn = hasDyn && (X_tShift != 0.0) ? PETSC_TRUE : PETSC_FALSE; 59439566063dSJacob Faibussowitsch PetscCall(PetscMalloc5(numCells * totDim, &u, X_t ? numCells * totDim : 0, &u_t, hasJac ? numCells * totDim * totDim : 0, &elemMat, hasPrec ? numCells * totDim * totDim : 0, &elemMatP, hasDyn ? numCells * totDim * totDim : 0, &elemMatD)); 59449566063dSJacob Faibussowitsch if (dmAux) PetscCall(PetscMalloc1(numCells * totDimAux, &a)); 59453e9753d6SMatthew G. Knepley for (c = cStart; c < cEnd; ++c) { 59463e9753d6SMatthew G. Knepley const PetscInt cell = cells ? cells[c] : c; 59473e9753d6SMatthew G. Knepley const PetscInt cind = c - cStart; 59483e9753d6SMatthew G. Knepley PetscScalar *x = NULL, *x_t = NULL; 59493e9753d6SMatthew G. Knepley PetscInt i; 59503e9753d6SMatthew G. Knepley 59519566063dSJacob Faibussowitsch PetscCall(DMPlexVecGetClosure(dm, section, X, cell, NULL, &x)); 59523e9753d6SMatthew G. Knepley for (i = 0; i < totDim; ++i) u[cind * totDim + i] = x[i]; 59539566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(dm, section, X, cell, NULL, &x)); 59543e9753d6SMatthew G. Knepley if (X_t) { 59559566063dSJacob Faibussowitsch PetscCall(DMPlexVecGetClosure(dm, section, X_t, cell, NULL, &x_t)); 59563e9753d6SMatthew G. Knepley for (i = 0; i < totDim; ++i) u_t[cind * totDim + i] = x_t[i]; 59579566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(dm, section, X_t, cell, NULL, &x_t)); 59583e9753d6SMatthew G. Knepley } 59593e9753d6SMatthew G. Knepley if (dmAux) { 59603e9753d6SMatthew G. Knepley PetscInt subcell; 59619566063dSJacob Faibussowitsch PetscCall(DMGetEnclosurePoint(dmAux, dm, encAux, cell, &subcell)); 59629566063dSJacob Faibussowitsch PetscCall(DMPlexVecGetClosure(plex, sectionAux, A, subcell, NULL, &x)); 59633e9753d6SMatthew G. Knepley for (i = 0; i < totDimAux; ++i) a[cind * totDimAux + i] = x[i]; 59649566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(plex, sectionAux, A, subcell, NULL, &x)); 59653e9753d6SMatthew G. Knepley } 59663e9753d6SMatthew G. Knepley } 59679566063dSJacob Faibussowitsch if (hasJac) PetscCall(PetscArrayzero(elemMat, numCells * totDim * totDim)); 59689566063dSJacob Faibussowitsch if (hasPrec) PetscCall(PetscArrayzero(elemMatP, numCells * totDim * totDim)); 59699566063dSJacob Faibussowitsch if (hasDyn) PetscCall(PetscArrayzero(elemMatD, numCells * totDim * totDim)); 59703e9753d6SMatthew G. Knepley for (fieldI = 0; fieldI < Nf; ++fieldI) { 59713e9753d6SMatthew G. Knepley PetscClassId id; 59723e9753d6SMatthew G. Knepley PetscFE fe; 59733e9753d6SMatthew G. Knepley PetscQuadrature qGeom = NULL; 59743e9753d6SMatthew G. Knepley PetscInt Nb; 59753e9753d6SMatthew G. Knepley /* Conforming batches */ 59763e9753d6SMatthew G. Knepley PetscInt numChunks, numBatches, numBlocks, Ne, blockSize, batchSize; 59773e9753d6SMatthew G. Knepley /* Remainder */ 59783e9753d6SMatthew G. Knepley PetscInt Nr, offset, Nq; 59793e9753d6SMatthew G. Knepley PetscInt maxDegree; 59803e9753d6SMatthew G. Knepley PetscFEGeom *cgeomFEM, *chunkGeom = NULL, *remGeom = NULL; 59813e9753d6SMatthew G. Knepley 59829566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(prob, fieldI, (PetscObject *)&fe)); 59839566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId((PetscObject)fe, &id)); 59849371c9d4SSatish Balay if (id == PETSCFV_CLASSID) { 59859371c9d4SSatish Balay hasFV = PETSC_TRUE; 59869371c9d4SSatish Balay continue; 59879371c9d4SSatish Balay } 59889566063dSJacob Faibussowitsch PetscCall(PetscFEGetDimension(fe, &Nb)); 59899566063dSJacob Faibussowitsch PetscCall(PetscFEGetTileSizes(fe, NULL, &numBlocks, NULL, &numBatches)); 59909566063dSJacob Faibussowitsch PetscCall(DMFieldGetDegree(coordField, cellIS, NULL, &maxDegree)); 599148a46eb9SPierre Jolivet if (maxDegree <= 1) PetscCall(DMFieldCreateDefaultQuadrature(coordField, cellIS, &qGeom)); 59923e9753d6SMatthew G. Knepley if (!qGeom) { 59939566063dSJacob Faibussowitsch PetscCall(PetscFEGetQuadrature(fe, &qGeom)); 59949566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)qGeom)); 59953e9753d6SMatthew G. Knepley } 59969566063dSJacob Faibussowitsch PetscCall(PetscQuadratureGetData(qGeom, NULL, NULL, &Nq, NULL, NULL)); 59979566063dSJacob Faibussowitsch PetscCall(DMSNESGetFEGeom(coordField, cellIS, qGeom, PETSC_FALSE, &cgeomFEM)); 59983e9753d6SMatthew G. Knepley blockSize = Nb; 59993e9753d6SMatthew G. Knepley batchSize = numBlocks * blockSize; 60009566063dSJacob Faibussowitsch PetscCall(PetscFESetTileSizes(fe, blockSize, numBlocks, batchSize, numBatches)); 60013e9753d6SMatthew G. Knepley numChunks = numCells / (numBatches * batchSize); 60023e9753d6SMatthew G. Knepley Ne = numChunks * numBatches * batchSize; 60033e9753d6SMatthew G. Knepley Nr = numCells % (numBatches * batchSize); 60043e9753d6SMatthew G. Knepley offset = numCells - Nr; 60059566063dSJacob Faibussowitsch PetscCall(PetscFEGeomGetChunk(cgeomFEM, 0, offset, &chunkGeom)); 60069566063dSJacob Faibussowitsch PetscCall(PetscFEGeomGetChunk(cgeomFEM, offset, numCells, &remGeom)); 60073e9753d6SMatthew G. Knepley for (fieldJ = 0; fieldJ < Nf; ++fieldJ) { 60086528b96dSMatthew G. Knepley key.field = fieldI * Nf + fieldJ; 60093e9753d6SMatthew G. Knepley if (hasJac) { 60109566063dSJacob Faibussowitsch PetscCall(PetscFEIntegrateJacobian(prob, PETSCFE_JACOBIAN, key, Ne, chunkGeom, u, u_t, probAux, a, t, X_tShift, elemMat)); 60118e3a54c0SPierre Jolivet PetscCall(PetscFEIntegrateJacobian(prob, PETSCFE_JACOBIAN, key, Nr, remGeom, &u[offset * totDim], PetscSafePointerPlusOffset(u_t, offset * totDim), probAux, PetscSafePointerPlusOffset(a, offset * totDimAux), t, X_tShift, &elemMat[offset * totDim * totDim])); 60123e9753d6SMatthew G. Knepley } 60133e9753d6SMatthew G. Knepley if (hasPrec) { 60149566063dSJacob Faibussowitsch PetscCall(PetscFEIntegrateJacobian(prob, PETSCFE_JACOBIAN_PRE, key, Ne, chunkGeom, u, u_t, probAux, a, t, X_tShift, elemMatP)); 60158e3a54c0SPierre Jolivet PetscCall(PetscFEIntegrateJacobian(prob, PETSCFE_JACOBIAN_PRE, key, Nr, remGeom, &u[offset * totDim], PetscSafePointerPlusOffset(u_t, offset * totDim), probAux, PetscSafePointerPlusOffset(a, offset * totDimAux), t, X_tShift, &elemMatP[offset * totDim * totDim])); 60163e9753d6SMatthew G. Knepley } 60173e9753d6SMatthew G. Knepley if (hasDyn) { 60189566063dSJacob Faibussowitsch PetscCall(PetscFEIntegrateJacobian(prob, PETSCFE_JACOBIAN_DYN, key, Ne, chunkGeom, u, u_t, probAux, a, t, X_tShift, elemMatD)); 60198e3a54c0SPierre Jolivet PetscCall(PetscFEIntegrateJacobian(prob, PETSCFE_JACOBIAN_DYN, key, Nr, remGeom, &u[offset * totDim], PetscSafePointerPlusOffset(u_t, offset * totDim), probAux, PetscSafePointerPlusOffset(a, offset * totDimAux), t, X_tShift, &elemMatD[offset * totDim * totDim])); 60203e9753d6SMatthew G. Knepley } 60213e9753d6SMatthew G. Knepley } 60229566063dSJacob Faibussowitsch PetscCall(PetscFEGeomRestoreChunk(cgeomFEM, offset, numCells, &remGeom)); 60239566063dSJacob Faibussowitsch PetscCall(PetscFEGeomRestoreChunk(cgeomFEM, 0, offset, &chunkGeom)); 60249566063dSJacob Faibussowitsch PetscCall(DMSNESRestoreFEGeom(coordField, cellIS, qGeom, PETSC_FALSE, &cgeomFEM)); 60259566063dSJacob Faibussowitsch PetscCall(PetscQuadratureDestroy(&qGeom)); 60263e9753d6SMatthew G. Knepley } 60273e9753d6SMatthew G. Knepley /* Add contribution from X_t */ 60289371c9d4SSatish Balay if (hasDyn) { 60299371c9d4SSatish Balay for (c = 0; c < numCells * totDim * totDim; ++c) elemMat[c] += X_tShift * elemMatD[c]; 60309371c9d4SSatish Balay } 60313e9753d6SMatthew G. Knepley if (hasFV) { 60323e9753d6SMatthew G. Knepley PetscClassId id; 60333e9753d6SMatthew G. Knepley PetscFV fv; 60343e9753d6SMatthew G. Knepley PetscInt offsetI, NcI, NbI = 1, fc, f; 60353e9753d6SMatthew G. Knepley 60363e9753d6SMatthew G. Knepley for (fieldI = 0; fieldI < Nf; ++fieldI) { 60379566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(prob, fieldI, (PetscObject *)&fv)); 60389566063dSJacob Faibussowitsch PetscCall(PetscDSGetFieldOffset(prob, fieldI, &offsetI)); 60399566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId((PetscObject)fv, &id)); 60403e9753d6SMatthew G. Knepley if (id != PETSCFV_CLASSID) continue; 60412f86f8c5SMatthew G. Knepley /* Put in the weighted identity */ 60429566063dSJacob Faibussowitsch PetscCall(PetscFVGetNumComponents(fv, &NcI)); 60433e9753d6SMatthew G. Knepley for (c = cStart; c < cEnd; ++c) { 60443e9753d6SMatthew G. Knepley const PetscInt cind = c - cStart; 60453e9753d6SMatthew G. Knepley const PetscInt eOffset = cind * totDim * totDim; 60462f86f8c5SMatthew G. Knepley PetscReal vol; 60472f86f8c5SMatthew G. Knepley 60482f86f8c5SMatthew G. Knepley PetscCall(DMPlexComputeCellGeometryFVM(dm, c, &vol, NULL, NULL)); 60493e9753d6SMatthew G. Knepley for (fc = 0; fc < NcI; ++fc) { 60503e9753d6SMatthew G. Knepley for (f = 0; f < NbI; ++f) { 60513e9753d6SMatthew G. Knepley const PetscInt i = offsetI + f * NcI + fc; 60523e9753d6SMatthew G. Knepley if (hasPrec) { 60532f86f8c5SMatthew G. Knepley if (hasJac) elemMat[eOffset + i * totDim + i] = vol; 60542f86f8c5SMatthew G. Knepley elemMatP[eOffset + i * totDim + i] = vol; 60559371c9d4SSatish Balay } else { 60562f86f8c5SMatthew G. Knepley elemMat[eOffset + i * totDim + i] = vol; 60579371c9d4SSatish Balay } 60583e9753d6SMatthew G. Knepley } 60593e9753d6SMatthew G. Knepley } 60603e9753d6SMatthew G. Knepley } 60613e9753d6SMatthew G. Knepley } 60623e9753d6SMatthew G. Knepley /* No allocated space for FV stuff, so ignore the zero entries */ 60639566063dSJacob Faibussowitsch PetscCall(MatSetOption(JacP, MAT_IGNORE_ZERO_ENTRIES, PETSC_TRUE)); 60643e9753d6SMatthew G. Knepley } 60653e9753d6SMatthew G. Knepley /* Insert values into matrix */ 60663e9753d6SMatthew G. Knepley for (c = cStart; c < cEnd; ++c) { 60673e9753d6SMatthew G. Knepley const PetscInt cell = cells ? cells[c] : c; 60683e9753d6SMatthew G. Knepley const PetscInt cind = c - cStart; 60693e9753d6SMatthew G. Knepley 60703e9753d6SMatthew G. Knepley /* Transform to global basis before insertion in Jacobian */ 60719566063dSJacob Faibussowitsch if (transform) PetscCall(DMPlexBasisTransformPointTensor_Internal(dm, tdm, tv, cell, PETSC_TRUE, totDim, &elemMat[cind * totDim * totDim])); 60723e9753d6SMatthew G. Knepley if (hasPrec) { 60733e9753d6SMatthew G. Knepley if (hasJac) { 60749566063dSJacob Faibussowitsch if (mesh->printFEM > 1) PetscCall(DMPrintCellMatrix(cell, name, totDim, totDim, &elemMat[cind * totDim * totDim])); 6075e8e188d2SZach Atkins PetscCall(DMPlexMatSetClosure_Internal(dm, section, globalSection, mesh->useMatClPerm, Jac, cell, &elemMat[cind * totDim * totDim], ADD_VALUES)); 60763e9753d6SMatthew G. Knepley } 60779566063dSJacob Faibussowitsch if (mesh->printFEM > 1) PetscCall(DMPrintCellMatrix(cell, name, totDim, totDim, &elemMatP[cind * totDim * totDim])); 6078be62b2b4SMatthew G. Knepley PetscCall(DMPlexMatSetClosure_Internal(dm, section, globalSection, mesh->useMatClPerm, JacP, cell, &elemMatP[cind * totDim * totDim], ADD_VALUES)); 60793e9753d6SMatthew G. Knepley } else { 60803e9753d6SMatthew G. Knepley if (hasJac) { 60819566063dSJacob Faibussowitsch if (mesh->printFEM > 1) PetscCall(DMPrintCellMatrix(cell, name, totDim, totDim, &elemMat[cind * totDim * totDim])); 6082e8e188d2SZach Atkins PetscCall(DMPlexMatSetClosure_Internal(dm, section, globalSection, mesh->useMatClPerm, JacP, cell, &elemMat[cind * totDim * totDim], ADD_VALUES)); 60833e9753d6SMatthew G. Knepley } 60843e9753d6SMatthew G. Knepley } 60853e9753d6SMatthew G. Knepley } 60869566063dSJacob Faibussowitsch PetscCall(ISRestorePointRange(cellIS, &cStart, &cEnd, &cells)); 60879566063dSJacob Faibussowitsch if (hasFV) PetscCall(MatSetOption(JacP, MAT_IGNORE_ZERO_ENTRIES, PETSC_FALSE)); 60889566063dSJacob Faibussowitsch PetscCall(PetscFree5(u, u_t, elemMat, elemMatP, elemMatD)); 60893e9753d6SMatthew G. Knepley if (dmAux) { 60909566063dSJacob Faibussowitsch PetscCall(PetscFree(a)); 60919566063dSJacob Faibussowitsch PetscCall(DMDestroy(&plex)); 60923e9753d6SMatthew G. Knepley } 60933e9753d6SMatthew G. Knepley /* Compute boundary integrals */ 60949566063dSJacob Faibussowitsch PetscCall(DMPlexComputeBdJacobian_Internal(dm, X, X_t, t, X_tShift, Jac, JacP, user)); 60953e9753d6SMatthew G. Knepley /* Assemble matrix */ 60969371c9d4SSatish Balay end: { 6097e04ae0b4SMatthew G. Knepley PetscBool assOp = hasJac && hasPrec ? PETSC_TRUE : PETSC_FALSE, gassOp; 6098e04ae0b4SMatthew G. Knepley 6099712fec58SPierre Jolivet PetscCall(MPIU_Allreduce(&assOp, &gassOp, 1, MPIU_BOOL, MPI_LOR, PetscObjectComm((PetscObject)dm))); 61003e9753d6SMatthew G. Knepley if (hasJac && hasPrec) { 61019566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(Jac, MAT_FINAL_ASSEMBLY)); 61029566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(Jac, MAT_FINAL_ASSEMBLY)); 61033e9753d6SMatthew G. Knepley } 6104e04ae0b4SMatthew G. Knepley } 61059566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(JacP, MAT_FINAL_ASSEMBLY)); 61069566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(JacP, MAT_FINAL_ASSEMBLY)); 61079566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DMPLEX_JacobianFEM, dm, 0, 0, 0)); 61083ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 61093e9753d6SMatthew G. Knepley } 61103e9753d6SMatthew G. Knepley 6111d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeJacobian_Hybrid_Internal(DM dm, PetscFormKey key[], IS cellIS, PetscReal t, PetscReal X_tShift, Vec locX, Vec locX_t, Mat Jac, Mat JacP, void *user) 6112d71ae5a4SJacob Faibussowitsch { 61133e9753d6SMatthew G. Knepley DM_Plex *mesh = (DM_Plex *)dm->data; 61143e9753d6SMatthew G. Knepley const char *name = "Hybrid Jacobian"; 6115148442b3SMatthew G. Knepley DM dmAux[3] = {NULL, NULL, NULL}; 6116148442b3SMatthew G. Knepley DMLabel ghostLabel = NULL; 61173e9753d6SMatthew G. Knepley DM plex = NULL; 61183e9753d6SMatthew G. Knepley DM plexA = NULL; 6119148442b3SMatthew G. Knepley PetscDS ds = NULL; 612007218a29SMatthew G. Knepley PetscDS dsIn = NULL; 6121148442b3SMatthew G. Knepley PetscDS dsAux[3] = {NULL, NULL, NULL}; 6122148442b3SMatthew G. Knepley Vec locA[3] = {NULL, NULL, NULL}; 612307218a29SMatthew G. Knepley DM dmScale[3] = {NULL, NULL, NULL}; 612407218a29SMatthew G. Knepley PetscDS dsScale[3] = {NULL, NULL, NULL}; 612507218a29SMatthew G. Knepley Vec locS[3] = {NULL, NULL, NULL}; 61263e9753d6SMatthew G. Knepley PetscSection section = NULL; 6127148442b3SMatthew G. Knepley PetscSection sectionAux[3] = {NULL, NULL, NULL}; 61283e9753d6SMatthew G. Knepley DMField coordField = NULL; 612907218a29SMatthew G. Knepley PetscScalar *a[3] = {NULL, NULL, NULL}; 613007218a29SMatthew G. Knepley PetscScalar *s[3] = {NULL, NULL, NULL}; 613107218a29SMatthew G. Knepley PetscScalar *u = NULL, *u_t; 613207218a29SMatthew G. Knepley PetscScalar *elemMatNeg, *elemMatPos, *elemMatCoh; 613307218a29SMatthew G. Knepley PetscScalar *elemMatNegP, *elemMatPosP, *elemMatCohP; 6134e432b41dSStefano Zampini PetscSection globalSection; 61353e9753d6SMatthew G. Knepley IS chunkIS; 61363e9753d6SMatthew G. Knepley const PetscInt *cells; 61373e9753d6SMatthew G. Knepley PetscInt *faces; 61383e9753d6SMatthew G. Knepley PetscInt cStart, cEnd, numCells; 61393e2b0218SMatthew G. Knepley PetscInt Nf, fieldI, fieldJ, totDim, totDimIn, totDimAux[3], totDimScale[3], numChunks, cellChunkSize, chunk; 61403e9753d6SMatthew G. Knepley PetscInt maxDegree = PETSC_MAX_INT; 61413e9753d6SMatthew G. Knepley PetscQuadrature affineQuad = NULL, *quads = NULL; 61423e9753d6SMatthew G. Knepley PetscFEGeom *affineGeom = NULL, **geoms = NULL; 6143e432b41dSStefano Zampini PetscBool hasBdJac, hasBdPrec; 61443e9753d6SMatthew G. Knepley 61453e9753d6SMatthew G. Knepley PetscFunctionBegin; 61463cc88e6aSStefano Zampini PetscCall(PetscLogEventBegin(DMPLEX_JacobianFEM, dm, 0, 0, 0)); 61473cc88e6aSStefano Zampini if (!cellIS) goto end; 6148437e83fbSMatthew G. Knepley PetscCall(ISGetPointRange(cellIS, &cStart, &cEnd, &cells)); 6149437e83fbSMatthew G. Knepley PetscCall(ISGetLocalSize(cellIS, &numCells)); 61503cc88e6aSStefano Zampini if (cStart >= cEnd) goto end; 61515fedec97SMatthew G. Knepley if ((key[0].label == key[1].label) && (key[0].value == key[1].value) && (key[0].part == key[1].part)) { 61525fedec97SMatthew G. Knepley const char *name; 61539566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)key[0].label, &name)); 615463a3b9bcSJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Form keys for each side of a cohesive surface must be different (%s, %" PetscInt_FMT ", %" PetscInt_FMT ")", name, key[0].value, key[0].part); 61555fedec97SMatthew G. Knepley } 61569566063dSJacob Faibussowitsch PetscCall(DMConvert(dm, DMPLEX, &plex)); 61579566063dSJacob Faibussowitsch PetscCall(DMGetSection(dm, §ion)); 61589566063dSJacob Faibussowitsch PetscCall(DMGetGlobalSection(dm, &globalSection)); 61599566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, "ghost", &ghostLabel)); 616007218a29SMatthew G. Knepley PetscCall(DMGetCellDS(dm, cells ? cells[cStart] : cStart, &ds, &dsIn)); 61619566063dSJacob Faibussowitsch PetscCall(PetscDSGetNumFields(ds, &Nf)); 61629566063dSJacob Faibussowitsch PetscCall(PetscDSGetTotalDimension(ds, &totDim)); 616307218a29SMatthew G. Knepley PetscCall(PetscDSGetTotalDimension(dsIn, &totDimIn)); 61649566063dSJacob Faibussowitsch PetscCall(PetscDSHasBdJacobian(ds, &hasBdJac)); 61659566063dSJacob Faibussowitsch PetscCall(PetscDSHasBdJacobianPreconditioner(ds, &hasBdPrec)); 61669566063dSJacob Faibussowitsch PetscCall(DMGetAuxiliaryVec(dm, key[2].label, key[2].value, key[2].part, &locA[2])); 6167148442b3SMatthew G. Knepley if (locA[2]) { 61681059d808SMatthew G. Knepley const PetscInt cellStart = cells ? cells[cStart] : cStart; 61691059d808SMatthew G. Knepley 61709566063dSJacob Faibussowitsch PetscCall(VecGetDM(locA[2], &dmAux[2])); 61719566063dSJacob Faibussowitsch PetscCall(DMConvert(dmAux[2], DMPLEX, &plexA)); 61729566063dSJacob Faibussowitsch PetscCall(DMGetSection(dmAux[2], §ionAux[2])); 617307218a29SMatthew G. Knepley PetscCall(DMGetCellDS(dmAux[2], cellStart, &dsAux[2], NULL)); 61749566063dSJacob Faibussowitsch PetscCall(PetscDSGetTotalDimension(dsAux[2], &totDimAux[2])); 6175148442b3SMatthew G. Knepley { 6176148442b3SMatthew G. Knepley const PetscInt *cone; 6177148442b3SMatthew G. Knepley PetscInt c; 6178148442b3SMatthew G. Knepley 61791059d808SMatthew G. Knepley PetscCall(DMPlexGetCone(dm, cellStart, &cone)); 6180148442b3SMatthew G. Knepley for (c = 0; c < 2; ++c) { 6181148442b3SMatthew G. Knepley const PetscInt *support; 6182148442b3SMatthew G. Knepley PetscInt ssize, s; 6183148442b3SMatthew G. Knepley 61849566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(dm, cone[c], &support)); 61859566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dm, cone[c], &ssize)); 61861059d808SMatthew G. Knepley PetscCheck(ssize == 2, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Face %" PetscInt_FMT " from cell %" PetscInt_FMT " has support size %" PetscInt_FMT " != 2", cone[c], cellStart, ssize); 61871059d808SMatthew G. Knepley if (support[0] == cellStart) s = 1; 61881059d808SMatthew G. Knepley else if (support[1] == cellStart) s = 0; 61891059d808SMatthew G. Knepley else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Face %" PetscInt_FMT " does not have cell %" PetscInt_FMT " in its support", cone[c], cellStart); 61909566063dSJacob Faibussowitsch PetscCall(DMGetAuxiliaryVec(dm, key[c].label, key[c].value, key[c].part, &locA[c])); 61919566063dSJacob Faibussowitsch if (locA[c]) PetscCall(VecGetDM(locA[c], &dmAux[c])); 6192ad540459SPierre Jolivet else dmAux[c] = dmAux[2]; 619307218a29SMatthew G. Knepley PetscCall(DMGetCellDS(dmAux[c], support[s], &dsAux[c], NULL)); 61949566063dSJacob Faibussowitsch PetscCall(PetscDSGetTotalDimension(dsAux[c], &totDimAux[c])); 6195148442b3SMatthew G. Knepley } 6196148442b3SMatthew G. Knepley } 61973e9753d6SMatthew G. Knepley } 619807218a29SMatthew G. Knepley /* Handle mass matrix scaling 619907218a29SMatthew G. Knepley The field in key[2] is the field to be scaled, and the scaling field is the first in the dsScale */ 620007218a29SMatthew G. Knepley PetscCall(DMGetAuxiliaryVec(dm, key[2].label, -key[2].value, key[2].part, &locS[2])); 620107218a29SMatthew G. Knepley if (locS[2]) { 62023e2b0218SMatthew G. Knepley const PetscInt cellStart = cells ? cells[cStart] : cStart; 620307218a29SMatthew G. Knepley PetscInt Nb, Nbs; 620407218a29SMatthew G. Knepley 620507218a29SMatthew G. Knepley PetscCall(VecGetDM(locS[2], &dmScale[2])); 620607218a29SMatthew G. Knepley PetscCall(DMGetCellDS(dmScale[2], cells ? cells[cStart] : cStart, &dsScale[2], NULL)); 62073e2b0218SMatthew G. Knepley PetscCall(PetscDSGetTotalDimension(dsScale[2], &totDimScale[2])); 620807218a29SMatthew G. Knepley // BRAD: This is not set correctly 620907218a29SMatthew G. Knepley key[2].field = 2; 621007218a29SMatthew G. Knepley PetscCall(PetscDSGetFieldSize(ds, key[2].field, &Nb)); 621107218a29SMatthew G. Knepley PetscCall(PetscDSGetFieldSize(dsScale[2], 0, &Nbs)); 621207218a29SMatthew G. Knepley PetscCheck(Nb == Nbs, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "Field %" PetscInt_FMT " of size %" PetscInt_FMT " cannot be scaled by field of size %" PetscInt_FMT, key[2].field, Nb, Nbs); 62133e2b0218SMatthew G. Knepley { 62143e2b0218SMatthew G. Knepley const PetscInt *cone; 62153e2b0218SMatthew G. Knepley PetscInt c; 62163e2b0218SMatthew G. Knepley 62173e2b0218SMatthew G. Knepley locS[1] = locS[0] = locS[2]; 62183e2b0218SMatthew G. Knepley dmScale[1] = dmScale[0] = dmScale[2]; 62193e2b0218SMatthew G. Knepley PetscCall(DMPlexGetCone(dm, cellStart, &cone)); 62203e2b0218SMatthew G. Knepley for (c = 0; c < 2; ++c) { 62213e2b0218SMatthew G. Knepley const PetscInt *support; 62223e2b0218SMatthew G. Knepley PetscInt ssize, s; 62233e2b0218SMatthew G. Knepley 62243e2b0218SMatthew G. Knepley PetscCall(DMPlexGetSupport(dm, cone[c], &support)); 62253e2b0218SMatthew G. Knepley PetscCall(DMPlexGetSupportSize(dm, cone[c], &ssize)); 62263e2b0218SMatthew G. Knepley PetscCheck(ssize == 2, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Face %" PetscInt_FMT " from cell %" PetscInt_FMT " has support size %" PetscInt_FMT " != 2", cone[c], cellStart, ssize); 62273e2b0218SMatthew G. Knepley if (support[0] == cellStart) s = 1; 62283e2b0218SMatthew G. Knepley else if (support[1] == cellStart) s = 0; 62293e2b0218SMatthew G. Knepley else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Face %" PetscInt_FMT " does not have cell %" PetscInt_FMT " in its support", cone[c], cellStart); 62303e2b0218SMatthew G. Knepley PetscCall(DMGetCellDS(dmScale[c], support[s], &dsScale[c], NULL)); 62313e2b0218SMatthew G. Knepley PetscCall(PetscDSGetTotalDimension(dsScale[c], &totDimScale[c])); 62323e2b0218SMatthew G. Knepley } 62333e2b0218SMatthew G. Knepley } 623407218a29SMatthew G. Knepley } 623507218a29SMatthew G. Knepley /* 2: Setup geometric data */ 62369566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateField(dm, &coordField)); 62379566063dSJacob Faibussowitsch PetscCall(DMFieldGetDegree(coordField, cellIS, NULL, &maxDegree)); 62383e9753d6SMatthew G. Knepley if (maxDegree > 1) { 62393e9753d6SMatthew G. Knepley PetscInt f; 62409566063dSJacob Faibussowitsch PetscCall(PetscCalloc2(Nf, &quads, Nf, &geoms)); 62413e9753d6SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 62423e9753d6SMatthew G. Knepley PetscFE fe; 62433e9753d6SMatthew G. Knepley 62449566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(ds, f, (PetscObject *)&fe)); 62453e9753d6SMatthew G. Knepley if (fe) { 62469566063dSJacob Faibussowitsch PetscCall(PetscFEGetQuadrature(fe, &quads[f])); 62479566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)quads[f])); 62483e9753d6SMatthew G. Knepley } 62493e9753d6SMatthew G. Knepley } 62503e9753d6SMatthew G. Knepley } 625107218a29SMatthew G. Knepley /* Loop over chunks */ 62523e9753d6SMatthew G. Knepley cellChunkSize = numCells; 62533e9753d6SMatthew G. Knepley numChunks = !numCells ? 0 : PetscCeilReal(((PetscReal)numCells) / cellChunkSize); 625407218a29SMatthew G. Knepley PetscCall(PetscCalloc1(2 * cellChunkSize, &faces)); 6255a4158a15SMatthew G. Knepley PetscCall(ISCreateGeneral(PETSC_COMM_SELF, 1 * cellChunkSize, faces, PETSC_USE_POINTER, &chunkIS)); 625607218a29SMatthew G. Knepley /* Extract field coefficients */ 625707218a29SMatthew G. Knepley /* NOTE This needs the end cap faces to have identical orientations */ 625807218a29SMatthew G. Knepley PetscCall(DMPlexGetHybridCellFields(dm, cellIS, locX, locX_t, locA[2], &u, &u_t, &a[2])); 625907218a29SMatthew G. Knepley PetscCall(DMPlexGetHybridFields(dm, dmAux, dsAux, cellIS, locA, PETSC_TRUE, a)); 62608bf0a22dSMatthew G. Knepley PetscCall(DMPlexGetHybridFields(dm, dmScale, dsScale, cellIS, locS, PETSC_TRUE, s)); 626107218a29SMatthew G. Knepley PetscCall(DMGetWorkArray(dm, hasBdJac ? cellChunkSize * totDim * totDim : 0, MPIU_SCALAR, &elemMatNeg)); 626207218a29SMatthew G. Knepley PetscCall(DMGetWorkArray(dm, hasBdJac ? cellChunkSize * totDim * totDim : 0, MPIU_SCALAR, &elemMatPos)); 626307218a29SMatthew G. Knepley PetscCall(DMGetWorkArray(dm, hasBdJac ? cellChunkSize * totDim * totDim : 0, MPIU_SCALAR, &elemMatCoh)); 626407218a29SMatthew G. Knepley PetscCall(DMGetWorkArray(dm, hasBdPrec ? cellChunkSize * totDim * totDim : 0, MPIU_SCALAR, &elemMatNegP)); 626507218a29SMatthew G. Knepley PetscCall(DMGetWorkArray(dm, hasBdPrec ? cellChunkSize * totDim * totDim : 0, MPIU_SCALAR, &elemMatPosP)); 626607218a29SMatthew G. Knepley PetscCall(DMGetWorkArray(dm, hasBdPrec ? cellChunkSize * totDim * totDim : 0, MPIU_SCALAR, &elemMatCohP)); 62673e9753d6SMatthew G. Knepley for (chunk = 0; chunk < numChunks; ++chunk) { 62683e9753d6SMatthew G. Knepley PetscInt cS = cStart + chunk * cellChunkSize, cE = PetscMin(cS + cellChunkSize, cEnd), numCells = cE - cS, c; 62693e9753d6SMatthew G. Knepley 627007218a29SMatthew G. Knepley if (hasBdJac) { 627107218a29SMatthew G. Knepley PetscCall(PetscArrayzero(elemMatNeg, cellChunkSize * totDim * totDim)); 627207218a29SMatthew G. Knepley PetscCall(PetscArrayzero(elemMatPos, cellChunkSize * totDim * totDim)); 627307218a29SMatthew G. Knepley PetscCall(PetscArrayzero(elemMatCoh, cellChunkSize * totDim * totDim)); 627407218a29SMatthew G. Knepley } 627507218a29SMatthew G. Knepley if (hasBdPrec) { 627607218a29SMatthew G. Knepley PetscCall(PetscArrayzero(elemMatNegP, cellChunkSize * totDim * totDim)); 627707218a29SMatthew G. Knepley PetscCall(PetscArrayzero(elemMatPosP, cellChunkSize * totDim * totDim)); 627807218a29SMatthew G. Knepley PetscCall(PetscArrayzero(elemMatCohP, cellChunkSize * totDim * totDim)); 627907218a29SMatthew G. Knepley } 62803e9753d6SMatthew G. Knepley /* Get faces */ 62813e9753d6SMatthew G. Knepley for (c = cS; c < cE; ++c) { 62823e9753d6SMatthew G. Knepley const PetscInt cell = cells ? cells[c] : c; 62833e9753d6SMatthew G. Knepley const PetscInt *cone; 62849566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(plex, cell, &cone)); 628507218a29SMatthew G. Knepley faces[(c - cS) * 2 + 0] = cone[0]; 628607218a29SMatthew G. Knepley faces[(c - cS) * 2 + 1] = cone[1]; 62873e9753d6SMatthew G. Knepley } 628807218a29SMatthew G. Knepley PetscCall(ISGeneralSetIndices(chunkIS, 2 * cellChunkSize, faces, PETSC_USE_POINTER)); 62893e9753d6SMatthew G. Knepley if (maxDegree <= 1) { 62909566063dSJacob Faibussowitsch if (!affineQuad) PetscCall(DMFieldCreateDefaultQuadrature(coordField, chunkIS, &affineQuad)); 62919566063dSJacob Faibussowitsch if (affineQuad) PetscCall(DMSNESGetFEGeom(coordField, chunkIS, affineQuad, PETSC_TRUE, &affineGeom)); 62923e9753d6SMatthew G. Knepley } else { 62933e9753d6SMatthew G. Knepley PetscInt f; 62943e9753d6SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 62959566063dSJacob Faibussowitsch if (quads[f]) PetscCall(DMSNESGetFEGeom(coordField, chunkIS, quads[f], PETSC_TRUE, &geoms[f])); 62963e9753d6SMatthew G. Knepley } 62973e9753d6SMatthew G. Knepley } 62983e9753d6SMatthew G. Knepley 62993e9753d6SMatthew G. Knepley for (fieldI = 0; fieldI < Nf; ++fieldI) { 63003e9753d6SMatthew G. Knepley PetscFE feI; 63013e9753d6SMatthew G. Knepley PetscFEGeom *geom = affineGeom ? affineGeom : geoms[fieldI]; 63023e9753d6SMatthew G. Knepley PetscFEGeom *chunkGeom = NULL, *remGeom = NULL; 63033e9753d6SMatthew G. Knepley PetscQuadrature quad = affineQuad ? affineQuad : quads[fieldI]; 63043e9753d6SMatthew G. Knepley PetscInt numChunks, numBatches, batchSize, numBlocks, blockSize, Ne, Nr, offset, Nq, Nb; 63055fedec97SMatthew G. Knepley PetscBool isCohesiveField; 63063e9753d6SMatthew G. Knepley 63079566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(ds, fieldI, (PetscObject *)&feI)); 63083e9753d6SMatthew G. Knepley if (!feI) continue; 63099566063dSJacob Faibussowitsch PetscCall(PetscFEGetTileSizes(feI, NULL, &numBlocks, NULL, &numBatches)); 63109566063dSJacob Faibussowitsch PetscCall(PetscQuadratureGetData(quad, NULL, NULL, &Nq, NULL, NULL)); 63119566063dSJacob Faibussowitsch PetscCall(PetscFEGetDimension(feI, &Nb)); 63123e9753d6SMatthew G. Knepley blockSize = Nb; 63133e9753d6SMatthew G. Knepley batchSize = numBlocks * blockSize; 63149566063dSJacob Faibussowitsch PetscCall(PetscFESetTileSizes(feI, blockSize, numBlocks, batchSize, numBatches)); 63153e9753d6SMatthew G. Knepley numChunks = numCells / (numBatches * batchSize); 63163e9753d6SMatthew G. Knepley Ne = numChunks * numBatches * batchSize; 63173e9753d6SMatthew G. Knepley Nr = numCells % (numBatches * batchSize); 63183e9753d6SMatthew G. Knepley offset = numCells - Nr; 631907218a29SMatthew G. Knepley PetscCall(PetscFEGeomGetChunk(geom, 0, offset * 2, &chunkGeom)); 632007218a29SMatthew G. Knepley PetscCall(PetscFEGeomGetChunk(geom, offset * 2, numCells * 2, &remGeom)); 63219566063dSJacob Faibussowitsch PetscCall(PetscDSGetCohesive(ds, fieldI, &isCohesiveField)); 63223e9753d6SMatthew G. Knepley for (fieldJ = 0; fieldJ < Nf; ++fieldJ) { 63233e9753d6SMatthew G. Knepley PetscFE feJ; 63243e9753d6SMatthew G. Knepley 63259566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(ds, fieldJ, (PetscObject *)&feJ)); 63263e9753d6SMatthew G. Knepley if (!feJ) continue; 6327148442b3SMatthew G. Knepley key[0].field = fieldI * Nf + fieldJ; 6328148442b3SMatthew G. Knepley key[1].field = fieldI * Nf + fieldJ; 63295fedec97SMatthew G. Knepley key[2].field = fieldI * Nf + fieldJ; 6330148442b3SMatthew G. Knepley if (hasBdJac) { 633107218a29SMatthew G. Knepley PetscCall(PetscFEIntegrateHybridJacobian(ds, dsIn, PETSCFE_JACOBIAN, key[0], 0, Ne, chunkGeom, u, u_t, dsAux[0], a[0], t, X_tShift, elemMatNeg)); 63328e3a54c0SPierre Jolivet PetscCall(PetscFEIntegrateHybridJacobian(ds, dsIn, PETSCFE_JACOBIAN, key[0], 0, Nr, remGeom, &u[offset * totDimIn], PetscSafePointerPlusOffset(u_t, offset * totDimIn), dsAux[0], PetscSafePointerPlusOffset(a[0], offset * totDimAux[0]), t, X_tShift, &elemMatNeg[offset * totDim * totDim])); 633307218a29SMatthew G. Knepley PetscCall(PetscFEIntegrateHybridJacobian(ds, dsIn, PETSCFE_JACOBIAN, key[1], 1, Ne, chunkGeom, u, u_t, dsAux[1], a[1], t, X_tShift, elemMatPos)); 63348e3a54c0SPierre Jolivet PetscCall(PetscFEIntegrateHybridJacobian(ds, dsIn, PETSCFE_JACOBIAN, key[1], 1, Nr, remGeom, &u[offset * totDimIn], PetscSafePointerPlusOffset(u_t, offset * totDimIn), dsAux[1], PetscSafePointerPlusOffset(a[1], offset * totDimAux[1]), t, X_tShift, &elemMatPos[offset * totDim * totDim])); 6335148442b3SMatthew G. Knepley } 6336148442b3SMatthew G. Knepley if (hasBdPrec) { 633707218a29SMatthew G. Knepley PetscCall(PetscFEIntegrateHybridJacobian(ds, dsIn, PETSCFE_JACOBIAN_PRE, key[0], 0, Ne, chunkGeom, u, u_t, dsAux[0], a[0], t, X_tShift, elemMatNegP)); 63388e3a54c0SPierre Jolivet PetscCall(PetscFEIntegrateHybridJacobian(ds, dsIn, PETSCFE_JACOBIAN_PRE, key[0], 0, Nr, remGeom, &u[offset * totDimIn], PetscSafePointerPlusOffset(u_t, offset * totDimIn), dsAux[0], &a[0][offset * totDimAux[0]], t, X_tShift, &elemMatNegP[offset * totDim * totDim])); 633907218a29SMatthew G. Knepley PetscCall(PetscFEIntegrateHybridJacobian(ds, dsIn, PETSCFE_JACOBIAN_PRE, key[1], 1, Ne, chunkGeom, u, u_t, dsAux[1], a[1], t, X_tShift, elemMatPosP)); 63408e3a54c0SPierre Jolivet PetscCall(PetscFEIntegrateHybridJacobian(ds, dsIn, PETSCFE_JACOBIAN_PRE, key[1], 1, Nr, remGeom, &u[offset * totDimIn], PetscSafePointerPlusOffset(u_t, offset * totDimIn), dsAux[1], &a[1][offset * totDimAux[1]], t, X_tShift, &elemMatPosP[offset * totDim * totDim])); 6341148442b3SMatthew G. Knepley } 63425fedec97SMatthew G. Knepley if (hasBdJac) { 634307218a29SMatthew G. Knepley PetscCall(PetscFEIntegrateHybridJacobian(ds, dsIn, PETSCFE_JACOBIAN, key[2], 2, Ne, chunkGeom, u, u_t, dsAux[2], a[2], t, X_tShift, elemMatCoh)); 63448e3a54c0SPierre Jolivet PetscCall(PetscFEIntegrateHybridJacobian(ds, dsIn, PETSCFE_JACOBIAN, key[2], 2, Nr, remGeom, &u[offset * totDimIn], PetscSafePointerPlusOffset(u_t, offset * totDimIn), dsAux[2], PetscSafePointerPlusOffset(a[2], offset * totDimAux[2]), t, X_tShift, &elemMatCoh[offset * totDim * totDim])); 6345148442b3SMatthew G. Knepley } 63465fedec97SMatthew G. Knepley if (hasBdPrec) { 634707218a29SMatthew G. Knepley PetscCall(PetscFEIntegrateHybridJacobian(ds, dsIn, PETSCFE_JACOBIAN_PRE, key[2], 2, Ne, chunkGeom, u, u_t, dsAux[2], a[2], t, X_tShift, elemMatCohP)); 63488e3a54c0SPierre Jolivet PetscCall(PetscFEIntegrateHybridJacobian(ds, dsIn, PETSCFE_JACOBIAN_PRE, key[2], 2, Nr, remGeom, &u[offset * totDimIn], PetscSafePointerPlusOffset(u_t, offset * totDimIn), dsAux[2], &a[2][offset * totDimAux[2]], t, X_tShift, &elemMatCohP[offset * totDim * totDim])); 63493e9753d6SMatthew G. Knepley } 63503e9753d6SMatthew G. Knepley } 63519566063dSJacob Faibussowitsch PetscCall(PetscFEGeomRestoreChunk(geom, offset, numCells, &remGeom)); 63529566063dSJacob Faibussowitsch PetscCall(PetscFEGeomRestoreChunk(geom, 0, offset, &chunkGeom)); 63533e9753d6SMatthew G. Knepley } 63543e9753d6SMatthew G. Knepley /* Insert values into matrix */ 63553e9753d6SMatthew G. Knepley for (c = cS; c < cE; ++c) { 63563e9753d6SMatthew G. Knepley const PetscInt cell = cells ? cells[c] : c; 635707218a29SMatthew G. Knepley const PetscInt cind = c - cS, coff = cind * totDim * totDim; 635807218a29SMatthew G. Knepley PetscInt i, j; 63593e9753d6SMatthew G. Knepley 636007218a29SMatthew G. Knepley /* Scale element values */ 636107218a29SMatthew G. Knepley if (locS[0]) { 63623e2b0218SMatthew G. Knepley PetscInt Nb, soff = cind * totDimScale[0], off = 0; 636307218a29SMatthew G. Knepley PetscBool cohesive; 636407218a29SMatthew G. Knepley 636507218a29SMatthew G. Knepley for (fieldI = 0; fieldI < Nf; ++fieldI) { 636607218a29SMatthew G. Knepley PetscCall(PetscDSGetFieldSize(ds, fieldI, &Nb)); 636707218a29SMatthew G. Knepley PetscCall(PetscDSGetCohesive(ds, fieldI, &cohesive)); 636807218a29SMatthew G. Knepley 636907218a29SMatthew G. Knepley if (fieldI == key[2].field) { 637007218a29SMatthew G. Knepley PetscCheck(cohesive, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Scaling should not happen for face fields"); 63718bf0a22dSMatthew G. Knepley for (i = 0; i < Nb; ++i) { 637207218a29SMatthew G. Knepley for (j = 0; j < totDim; ++j) elemMatCoh[coff + (off + i) * totDim + j] += s[0][soff + i] * elemMatNeg[coff + (off + i) * totDim + j] + s[1][soff + i] * elemMatPos[coff + (off + i) * totDim + j]; 63738bf0a22dSMatthew G. Knepley if (hasBdPrec) 63748bf0a22dSMatthew G. Knepley for (j = 0; j < totDim; ++j) elemMatCohP[coff + (off + i) * totDim + j] += s[0][soff + i] * elemMatNegP[coff + (off + i) * totDim + j] + s[1][soff + i] * elemMatPosP[coff + (off + i) * totDim + j]; 63758bf0a22dSMatthew G. Knepley } 637607218a29SMatthew G. Knepley off += Nb; 637707218a29SMatthew G. Knepley } else { 637807218a29SMatthew G. Knepley const PetscInt N = cohesive ? Nb : Nb * 2; 637907218a29SMatthew G. Knepley 63808bf0a22dSMatthew G. Knepley for (i = 0; i < N; ++i) { 638107218a29SMatthew G. Knepley for (j = 0; j < totDim; ++j) elemMatCoh[coff + (off + i) * totDim + j] += elemMatNeg[coff + (off + i) * totDim + j] + elemMatPos[coff + (off + i) * totDim + j]; 63828bf0a22dSMatthew G. Knepley if (hasBdPrec) 63838bf0a22dSMatthew G. Knepley for (j = 0; j < totDim; ++j) elemMatCohP[coff + (off + i) * totDim + j] += elemMatNegP[coff + (off + i) * totDim + j] + elemMatPosP[coff + (off + i) * totDim + j]; 63848bf0a22dSMatthew G. Knepley } 638507218a29SMatthew G. Knepley off += N; 638607218a29SMatthew G. Knepley } 638707218a29SMatthew G. Knepley } 638807218a29SMatthew G. Knepley } else { 638907218a29SMatthew G. Knepley for (i = 0; i < totDim * totDim; ++i) elemMatCoh[coff + i] += elemMatNeg[coff + i] + elemMatPos[coff + i]; 63908bf0a22dSMatthew G. Knepley if (hasBdPrec) 63918bf0a22dSMatthew G. Knepley for (i = 0; i < totDim * totDim; ++i) elemMatCohP[coff + i] += elemMatNegP[coff + i] + elemMatPosP[coff + i]; 639207218a29SMatthew G. Knepley } 63933e9753d6SMatthew G. Knepley if (hasBdPrec) { 63943e9753d6SMatthew G. Knepley if (hasBdJac) { 639507218a29SMatthew G. Knepley if (mesh->printFEM > 1) PetscCall(DMPrintCellMatrix(cell, name, totDim, totDim, &elemMatCoh[cind * totDim * totDim])); 6396e8e188d2SZach Atkins PetscCall(DMPlexMatSetClosure_Internal(plex, section, globalSection, mesh->useMatClPerm, Jac, cell, &elemMatCoh[cind * totDim * totDim], ADD_VALUES)); 63973e9753d6SMatthew G. Knepley } 639807218a29SMatthew G. Knepley if (mesh->printFEM > 1) PetscCall(DMPrintCellMatrix(cell, name, totDim, totDim, &elemMatCohP[cind * totDim * totDim])); 639907218a29SMatthew G. Knepley PetscCall(DMPlexMatSetClosure(plex, section, globalSection, JacP, cell, &elemMatCohP[cind * totDim * totDim], ADD_VALUES)); 64003e9753d6SMatthew G. Knepley } else if (hasBdJac) { 640107218a29SMatthew G. Knepley if (mesh->printFEM > 1) PetscCall(DMPrintCellMatrix(cell, name, totDim, totDim, &elemMatCoh[cind * totDim * totDim])); 6402e8e188d2SZach Atkins PetscCall(DMPlexMatSetClosure_Internal(plex, section, globalSection, mesh->useMatClPerm, JacP, cell, &elemMatCoh[cind * totDim * totDim], ADD_VALUES)); 64033e9753d6SMatthew G. Knepley } 64043e9753d6SMatthew G. Knepley } 64053e9753d6SMatthew G. Knepley } 64069566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreCellFields(dm, cellIS, locX, locX_t, locA[2], &u, &u_t, &a[2])); 640707218a29SMatthew G. Knepley PetscCall(DMPlexRestoreHybridFields(dm, dmAux, dsAux, cellIS, locA, PETSC_TRUE, a)); 640807218a29SMatthew G. Knepley PetscCall(DMRestoreWorkArray(dm, hasBdJac ? cellChunkSize * totDim * totDim : 0, MPIU_SCALAR, &elemMatNeg)); 640907218a29SMatthew G. Knepley PetscCall(DMRestoreWorkArray(dm, hasBdJac ? cellChunkSize * totDim * totDim : 0, MPIU_SCALAR, &elemMatPos)); 641007218a29SMatthew G. Knepley PetscCall(DMRestoreWorkArray(dm, hasBdJac ? cellChunkSize * totDim * totDim : 0, MPIU_SCALAR, &elemMatCoh)); 641107218a29SMatthew G. Knepley PetscCall(DMRestoreWorkArray(dm, hasBdPrec ? cellChunkSize * totDim * totDim : 0, MPIU_SCALAR, &elemMatNegP)); 641207218a29SMatthew G. Knepley PetscCall(DMRestoreWorkArray(dm, hasBdPrec ? cellChunkSize * totDim * totDim : 0, MPIU_SCALAR, &elemMatPosP)); 641307218a29SMatthew G. Knepley PetscCall(DMRestoreWorkArray(dm, hasBdPrec ? cellChunkSize * totDim * totDim : 0, MPIU_SCALAR, &elemMatCohP)); 64149566063dSJacob Faibussowitsch PetscCall(PetscFree(faces)); 64159566063dSJacob Faibussowitsch PetscCall(ISDestroy(&chunkIS)); 64169566063dSJacob Faibussowitsch PetscCall(ISRestorePointRange(cellIS, &cStart, &cEnd, &cells)); 64173e9753d6SMatthew G. Knepley if (maxDegree <= 1) { 64189566063dSJacob Faibussowitsch PetscCall(DMSNESRestoreFEGeom(coordField, cellIS, affineQuad, PETSC_FALSE, &affineGeom)); 64199566063dSJacob Faibussowitsch PetscCall(PetscQuadratureDestroy(&affineQuad)); 64203e9753d6SMatthew G. Knepley } else { 64213e9753d6SMatthew G. Knepley PetscInt f; 64223e9753d6SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 64239566063dSJacob Faibussowitsch if (geoms) PetscCall(DMSNESRestoreFEGeom(coordField, cellIS, quads[f], PETSC_FALSE, &geoms[f])); 64249566063dSJacob Faibussowitsch if (quads) PetscCall(PetscQuadratureDestroy(&quads[f])); 64253e9753d6SMatthew G. Knepley } 64269566063dSJacob Faibussowitsch PetscCall(PetscFree2(quads, geoms)); 64273e9753d6SMatthew G. Knepley } 64289566063dSJacob Faibussowitsch if (dmAux[2]) PetscCall(DMDestroy(&plexA)); 64299566063dSJacob Faibussowitsch PetscCall(DMDestroy(&plex)); 64303cc88e6aSStefano Zampini end: 64319566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DMPLEX_JacobianFEM, dm, 0, 0, 0)); 64323ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 64333e9753d6SMatthew G. Knepley } 64348e3a2eefSMatthew G. Knepley 64358e3a2eefSMatthew G. Knepley /* 64368e3a2eefSMatthew G. Knepley DMPlexComputeJacobian_Action_Internal - Form the local portion of the Jacobian action Z = J(X) Y at the local solution X using pointwise functions specified by the user. 64378e3a2eefSMatthew G. Knepley 64388e3a2eefSMatthew G. Knepley Input Parameters: 64398e3a2eefSMatthew G. Knepley + dm - The mesh 6440baca6076SPierre Jolivet . key - The PetscWeakFormKey indicating where integration should happen 644106ad1575SMatthew G. Knepley . cellIS - The cells to integrate over 64428e3a2eefSMatthew G. Knepley . t - The time 6443145b44c9SPierre Jolivet . X_tShift - The multiplier for the Jacobian with respect to X_t 64448e3a2eefSMatthew G. Knepley . X - Local solution vector 64458e3a2eefSMatthew G. Knepley . X_t - Time-derivative of the local solution vector 64468e3a2eefSMatthew G. Knepley . Y - Local input vector 644706ad1575SMatthew G. Knepley - user - the user context 64488e3a2eefSMatthew G. Knepley 64498e3a2eefSMatthew G. Knepley Output Parameter: 64508e3a2eefSMatthew G. Knepley . Z - Local output vector 64518e3a2eefSMatthew G. Knepley 64528e3a2eefSMatthew G. Knepley Note: 64538e3a2eefSMatthew G. Knepley We form the residual one batch of elements at a time. This allows us to offload work onto an accelerator, 64548e3a2eefSMatthew G. Knepley like a GPU, or vectorize on a multicore machine. 64558e3a2eefSMatthew G. Knepley */ 6456d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeJacobian_Action_Internal(DM dm, PetscFormKey key, IS cellIS, PetscReal t, PetscReal X_tShift, Vec X, Vec X_t, Vec Y, Vec Z, void *user) 6457d71ae5a4SJacob Faibussowitsch { 64588e3a2eefSMatthew G. Knepley DM_Plex *mesh = (DM_Plex *)dm->data; 64598e3a2eefSMatthew G. Knepley const char *name = "Jacobian"; 64608e3a2eefSMatthew G. Knepley DM dmAux = NULL, plex, plexAux = NULL; 64618e3a2eefSMatthew G. Knepley DMEnclosureType encAux; 64628e3a2eefSMatthew G. Knepley Vec A; 64638e3a2eefSMatthew G. Knepley DMField coordField; 64648e3a2eefSMatthew G. Knepley PetscDS prob, probAux = NULL; 64658e3a2eefSMatthew G. Knepley PetscQuadrature quad; 64668e3a2eefSMatthew G. Knepley PetscSection section, globalSection, sectionAux; 64678e3a2eefSMatthew G. Knepley PetscScalar *elemMat, *elemMatD, *u, *u_t, *a = NULL, *y, *z; 64688e3a2eefSMatthew G. Knepley const PetscInt *cells; 64698e3a2eefSMatthew G. Knepley PetscInt Nf, fieldI, fieldJ; 64708e3a2eefSMatthew G. Knepley PetscInt totDim, totDimAux = 0, cStart, cEnd, numCells, c; 64718e3a2eefSMatthew G. Knepley PetscBool hasDyn; 64728e3a2eefSMatthew G. Knepley 64738e3a2eefSMatthew G. Knepley PetscFunctionBegin; 64749566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DMPLEX_JacobianFEM, dm, 0, 0, 0)); 64759566063dSJacob Faibussowitsch PetscCall(DMConvert(dm, DMPLEX, &plex)); 64769566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(cellIS, &numCells)); 64779566063dSJacob Faibussowitsch PetscCall(ISGetPointRange(cellIS, &cStart, &cEnd, &cells)); 64789566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, §ion)); 64799566063dSJacob Faibussowitsch PetscCall(DMGetGlobalSection(dm, &globalSection)); 648007218a29SMatthew G. Knepley PetscCall(DMGetCellDS(dm, cells ? cells[cStart] : cStart, &prob, NULL)); 64819566063dSJacob Faibussowitsch PetscCall(PetscDSGetNumFields(prob, &Nf)); 64829566063dSJacob Faibussowitsch PetscCall(PetscDSGetTotalDimension(prob, &totDim)); 64839566063dSJacob Faibussowitsch PetscCall(PetscDSHasDynamicJacobian(prob, &hasDyn)); 64848e3a2eefSMatthew G. Knepley hasDyn = hasDyn && (X_tShift != 0.0) ? PETSC_TRUE : PETSC_FALSE; 64859566063dSJacob Faibussowitsch PetscCall(DMGetAuxiliaryVec(dm, key.label, key.value, key.part, &A)); 64868e3a2eefSMatthew G. Knepley if (A) { 64879566063dSJacob Faibussowitsch PetscCall(VecGetDM(A, &dmAux)); 64889566063dSJacob Faibussowitsch PetscCall(DMGetEnclosureRelation(dmAux, dm, &encAux)); 64899566063dSJacob Faibussowitsch PetscCall(DMConvert(dmAux, DMPLEX, &plexAux)); 64909566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(plexAux, §ionAux)); 64919566063dSJacob Faibussowitsch PetscCall(DMGetDS(dmAux, &probAux)); 64929566063dSJacob Faibussowitsch PetscCall(PetscDSGetTotalDimension(probAux, &totDimAux)); 64938e3a2eefSMatthew G. Knepley } 64949566063dSJacob Faibussowitsch PetscCall(VecSet(Z, 0.0)); 64959566063dSJacob Faibussowitsch PetscCall(PetscMalloc6(numCells * totDim, &u, X_t ? numCells * totDim : 0, &u_t, numCells * totDim * totDim, &elemMat, hasDyn ? numCells * totDim * totDim : 0, &elemMatD, numCells * totDim, &y, totDim, &z)); 64969566063dSJacob Faibussowitsch if (dmAux) PetscCall(PetscMalloc1(numCells * totDimAux, &a)); 64979566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateField(dm, &coordField)); 64988e3a2eefSMatthew G. Knepley for (c = cStart; c < cEnd; ++c) { 64998e3a2eefSMatthew G. Knepley const PetscInt cell = cells ? cells[c] : c; 65008e3a2eefSMatthew G. Knepley const PetscInt cind = c - cStart; 65018e3a2eefSMatthew G. Knepley PetscScalar *x = NULL, *x_t = NULL; 65028e3a2eefSMatthew G. Knepley PetscInt i; 65038e3a2eefSMatthew G. Knepley 65049566063dSJacob Faibussowitsch PetscCall(DMPlexVecGetClosure(plex, section, X, cell, NULL, &x)); 65058e3a2eefSMatthew G. Knepley for (i = 0; i < totDim; ++i) u[cind * totDim + i] = x[i]; 65069566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(plex, section, X, cell, NULL, &x)); 65078e3a2eefSMatthew G. Knepley if (X_t) { 65089566063dSJacob Faibussowitsch PetscCall(DMPlexVecGetClosure(plex, section, X_t, cell, NULL, &x_t)); 65098e3a2eefSMatthew G. Knepley for (i = 0; i < totDim; ++i) u_t[cind * totDim + i] = x_t[i]; 65109566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(plex, section, X_t, cell, NULL, &x_t)); 65118e3a2eefSMatthew G. Knepley } 65128e3a2eefSMatthew G. Knepley if (dmAux) { 65138e3a2eefSMatthew G. Knepley PetscInt subcell; 65149566063dSJacob Faibussowitsch PetscCall(DMGetEnclosurePoint(dmAux, dm, encAux, cell, &subcell)); 65159566063dSJacob Faibussowitsch PetscCall(DMPlexVecGetClosure(plexAux, sectionAux, A, subcell, NULL, &x)); 65168e3a2eefSMatthew G. Knepley for (i = 0; i < totDimAux; ++i) a[cind * totDimAux + i] = x[i]; 65179566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(plexAux, sectionAux, A, subcell, NULL, &x)); 65188e3a2eefSMatthew G. Knepley } 65199566063dSJacob Faibussowitsch PetscCall(DMPlexVecGetClosure(plex, section, Y, cell, NULL, &x)); 65208e3a2eefSMatthew G. Knepley for (i = 0; i < totDim; ++i) y[cind * totDim + i] = x[i]; 65219566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(plex, section, Y, cell, NULL, &x)); 65228e3a2eefSMatthew G. Knepley } 65239566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(elemMat, numCells * totDim * totDim)); 65249566063dSJacob Faibussowitsch if (hasDyn) PetscCall(PetscArrayzero(elemMatD, numCells * totDim * totDim)); 65258e3a2eefSMatthew G. Knepley for (fieldI = 0; fieldI < Nf; ++fieldI) { 65268e3a2eefSMatthew G. Knepley PetscFE fe; 65278e3a2eefSMatthew G. Knepley PetscInt Nb; 65288e3a2eefSMatthew G. Knepley /* Conforming batches */ 65298e3a2eefSMatthew G. Knepley PetscInt numChunks, numBatches, numBlocks, Ne, blockSize, batchSize; 65308e3a2eefSMatthew G. Knepley /* Remainder */ 65318e3a2eefSMatthew G. Knepley PetscInt Nr, offset, Nq; 65328e3a2eefSMatthew G. Knepley PetscQuadrature qGeom = NULL; 65338e3a2eefSMatthew G. Knepley PetscInt maxDegree; 65348e3a2eefSMatthew G. Knepley PetscFEGeom *cgeomFEM, *chunkGeom = NULL, *remGeom = NULL; 65358e3a2eefSMatthew G. Knepley 65369566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(prob, fieldI, (PetscObject *)&fe)); 65379566063dSJacob Faibussowitsch PetscCall(PetscFEGetQuadrature(fe, &quad)); 65389566063dSJacob Faibussowitsch PetscCall(PetscFEGetDimension(fe, &Nb)); 65399566063dSJacob Faibussowitsch PetscCall(PetscFEGetTileSizes(fe, NULL, &numBlocks, NULL, &numBatches)); 65409566063dSJacob Faibussowitsch PetscCall(DMFieldGetDegree(coordField, cellIS, NULL, &maxDegree)); 65419566063dSJacob Faibussowitsch if (maxDegree <= 1) PetscCall(DMFieldCreateDefaultQuadrature(coordField, cellIS, &qGeom)); 65428e3a2eefSMatthew G. Knepley if (!qGeom) { 65439566063dSJacob Faibussowitsch PetscCall(PetscFEGetQuadrature(fe, &qGeom)); 65449566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)qGeom)); 65458e3a2eefSMatthew G. Knepley } 65469566063dSJacob Faibussowitsch PetscCall(PetscQuadratureGetData(qGeom, NULL, NULL, &Nq, NULL, NULL)); 65479566063dSJacob Faibussowitsch PetscCall(DMSNESGetFEGeom(coordField, cellIS, qGeom, PETSC_FALSE, &cgeomFEM)); 65488e3a2eefSMatthew G. Knepley blockSize = Nb; 65498e3a2eefSMatthew G. Knepley batchSize = numBlocks * blockSize; 65509566063dSJacob Faibussowitsch PetscCall(PetscFESetTileSizes(fe, blockSize, numBlocks, batchSize, numBatches)); 65518e3a2eefSMatthew G. Knepley numChunks = numCells / (numBatches * batchSize); 65528e3a2eefSMatthew G. Knepley Ne = numChunks * numBatches * batchSize; 65538e3a2eefSMatthew G. Knepley Nr = numCells % (numBatches * batchSize); 65548e3a2eefSMatthew G. Knepley offset = numCells - Nr; 65559566063dSJacob Faibussowitsch PetscCall(PetscFEGeomGetChunk(cgeomFEM, 0, offset, &chunkGeom)); 65569566063dSJacob Faibussowitsch PetscCall(PetscFEGeomGetChunk(cgeomFEM, offset, numCells, &remGeom)); 65578e3a2eefSMatthew G. Knepley for (fieldJ = 0; fieldJ < Nf; ++fieldJ) { 65588e3a2eefSMatthew G. Knepley key.field = fieldI * Nf + fieldJ; 65599566063dSJacob Faibussowitsch PetscCall(PetscFEIntegrateJacobian(prob, PETSCFE_JACOBIAN, key, Ne, chunkGeom, u, u_t, probAux, a, t, X_tShift, elemMat)); 65608e3a54c0SPierre Jolivet PetscCall(PetscFEIntegrateJacobian(prob, PETSCFE_JACOBIAN, key, Nr, remGeom, &u[offset * totDim], PetscSafePointerPlusOffset(u_t, offset * totDim), probAux, PetscSafePointerPlusOffset(a, offset * totDimAux), t, X_tShift, &elemMat[offset * totDim * totDim])); 65618e3a2eefSMatthew G. Knepley if (hasDyn) { 65629566063dSJacob Faibussowitsch PetscCall(PetscFEIntegrateJacobian(prob, PETSCFE_JACOBIAN_DYN, key, Ne, chunkGeom, u, u_t, probAux, a, t, X_tShift, elemMatD)); 65638e3a54c0SPierre Jolivet PetscCall(PetscFEIntegrateJacobian(prob, PETSCFE_JACOBIAN_DYN, key, Nr, remGeom, &u[offset * totDim], PetscSafePointerPlusOffset(u_t, offset * totDim), probAux, &a[offset * totDimAux], t, X_tShift, &elemMatD[offset * totDim * totDim])); 65648e3a2eefSMatthew G. Knepley } 65658e3a2eefSMatthew G. Knepley } 65669566063dSJacob Faibussowitsch PetscCall(PetscFEGeomRestoreChunk(cgeomFEM, offset, numCells, &remGeom)); 65679566063dSJacob Faibussowitsch PetscCall(PetscFEGeomRestoreChunk(cgeomFEM, 0, offset, &chunkGeom)); 65689566063dSJacob Faibussowitsch PetscCall(DMSNESRestoreFEGeom(coordField, cellIS, qGeom, PETSC_FALSE, &cgeomFEM)); 65699566063dSJacob Faibussowitsch PetscCall(PetscQuadratureDestroy(&qGeom)); 65708e3a2eefSMatthew G. Knepley } 65718e3a2eefSMatthew G. Knepley if (hasDyn) { 65728e3a2eefSMatthew G. Knepley for (c = 0; c < numCells * totDim * totDim; ++c) elemMat[c] += X_tShift * elemMatD[c]; 65738e3a2eefSMatthew G. Knepley } 65748e3a2eefSMatthew G. Knepley for (c = cStart; c < cEnd; ++c) { 65758e3a2eefSMatthew G. Knepley const PetscInt cell = cells ? cells[c] : c; 65768e3a2eefSMatthew G. Knepley const PetscInt cind = c - cStart; 65778e3a2eefSMatthew G. Knepley const PetscBLASInt M = totDim, one = 1; 65788e3a2eefSMatthew G. Knepley const PetscScalar a = 1.0, b = 0.0; 65798e3a2eefSMatthew G. Knepley 6580792fecdfSBarry Smith PetscCallBLAS("BLASgemv", BLASgemv_("N", &M, &M, &a, &elemMat[cind * totDim * totDim], &M, &y[cind * totDim], &one, &b, z, &one)); 65818e3a2eefSMatthew G. Knepley if (mesh->printFEM > 1) { 65829566063dSJacob Faibussowitsch PetscCall(DMPrintCellMatrix(c, name, totDim, totDim, &elemMat[cind * totDim * totDim])); 65839566063dSJacob Faibussowitsch PetscCall(DMPrintCellVector(c, "Y", totDim, &y[cind * totDim])); 65849566063dSJacob Faibussowitsch PetscCall(DMPrintCellVector(c, "Z", totDim, z)); 65858e3a2eefSMatthew G. Knepley } 65869566063dSJacob Faibussowitsch PetscCall(DMPlexVecSetClosure(dm, section, Z, cell, z, ADD_VALUES)); 65878e3a2eefSMatthew G. Knepley } 65889566063dSJacob Faibussowitsch PetscCall(PetscFree6(u, u_t, elemMat, elemMatD, y, z)); 65898e3a2eefSMatthew G. Knepley if (mesh->printFEM) { 65909566063dSJacob Faibussowitsch PetscCall(PetscPrintf(PetscObjectComm((PetscObject)Z), "Z:\n")); 65919566063dSJacob Faibussowitsch PetscCall(VecView(Z, NULL)); 65928e3a2eefSMatthew G. Knepley } 65931059d808SMatthew G. Knepley PetscCall(ISRestorePointRange(cellIS, &cStart, &cEnd, &cells)); 65949566063dSJacob Faibussowitsch PetscCall(PetscFree(a)); 65959566063dSJacob Faibussowitsch PetscCall(DMDestroy(&plexAux)); 65969566063dSJacob Faibussowitsch PetscCall(DMDestroy(&plex)); 65979566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DMPLEX_JacobianFEM, dm, 0, 0, 0)); 65983ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 65998e3a2eefSMatthew G. Knepley } 6600