xref: /petsc/src/dm/impls/plex/plexfem.c (revision e91c04dfc8a52dee1965211bb1cc8e5bf775178f)
117314648SMatthew G. Knepley #include "petscdm.h"
217314648SMatthew G. Knepley #include "petscerror.h"
3af0996ceSBarry Smith #include <petsc/private/dmpleximpl.h> /*I      "petscdmplex.h"   I*/
4da97024aSMatthew G. Knepley #include <petscsf.h>
5cb1e1211SMatthew G Knepley 
68e3a2eefSMatthew G. Knepley #include <petscblaslapack.h>
7e8f14785SLisandro Dalcin #include <petsc/private/hashsetij.h>
8af0996ceSBarry Smith #include <petsc/private/petscfeimpl.h>
9af0996ceSBarry Smith #include <petsc/private/petscfvimpl.h>
10a0845e3aSMatthew G. Knepley 
115f0b18bfSMatthew G. Knepley PetscBool  Clementcite       = PETSC_FALSE;
125f0b18bfSMatthew G. Knepley const char ClementCitation[] = "@article{clement1975approximation,\n"
135f0b18bfSMatthew G. Knepley                                "  title   = {Approximation by finite element functions using local regularization},\n"
145f0b18bfSMatthew G. Knepley                                "  author  = {Philippe Cl{\\'e}ment},\n"
155f0b18bfSMatthew G. Knepley                                "  journal = {Revue fran{\\c{c}}aise d'automatique, informatique, recherche op{\\'e}rationnelle. Analyse num{\\'e}rique},\n"
165f0b18bfSMatthew G. Knepley                                "  volume  = {9},\n"
175f0b18bfSMatthew G. Knepley                                "  number  = {R2},\n"
185f0b18bfSMatthew G. Knepley                                "  pages   = {77--84},\n"
195f0b18bfSMatthew G. Knepley                                "  year    = {1975}\n}\n";
205f0b18bfSMatthew G. Knepley 
21d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexConvertPlex(DM dm, DM *plex, PetscBool copy)
22d71ae5a4SJacob Faibussowitsch {
232f856554SMatthew G. Knepley   PetscBool isPlex;
242f856554SMatthew G. Knepley 
252f856554SMatthew G. Knepley   PetscFunctionBegin;
269566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)dm, DMPLEX, &isPlex));
272f856554SMatthew G. Knepley   if (isPlex) {
282f856554SMatthew G. Knepley     *plex = dm;
299566063dSJacob Faibussowitsch     PetscCall(PetscObjectReference((PetscObject)dm));
302f856554SMatthew G. Knepley   } else {
319566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)dm, "dm_plex", (PetscObject *)plex));
322f856554SMatthew G. Knepley     if (!*plex) {
339566063dSJacob Faibussowitsch       PetscCall(DMConvert(dm, DMPLEX, plex));
349566063dSJacob Faibussowitsch       PetscCall(PetscObjectCompose((PetscObject)dm, "dm_plex", (PetscObject)*plex));
35cbf8eb3cSStefano Zampini     } else {
36cbf8eb3cSStefano Zampini       PetscCall(PetscObjectReference((PetscObject)*plex));
37cbf8eb3cSStefano Zampini     }
382f856554SMatthew G. Knepley     if (copy) {
392f856554SMatthew G. Knepley       DMSubDomainHookLink link;
409a2a23afSMatthew G. Knepley 
41bb4b53efSMatthew G. Knepley       PetscCall(DMCopyDS(dm, PETSC_DETERMINE, PETSC_DETERMINE, *plex));
429566063dSJacob Faibussowitsch       PetscCall(DMCopyAuxiliaryVec(dm, *plex));
439a2a23afSMatthew G. Knepley       /* Run the subdomain hook (this will copy the DMSNES/DMTS) */
442f856554SMatthew G. Knepley       for (link = dm->subdomainhook; link; link = link->next) {
459566063dSJacob Faibussowitsch         if (link->ddhook) PetscCall((*link->ddhook)(dm, *plex, link->ctx));
462f856554SMatthew G. Knepley       }
472f856554SMatthew G. Knepley     }
482f856554SMatthew G. Knepley   }
493ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
502f856554SMatthew G. Knepley }
512f856554SMatthew G. Knepley 
5249abdd8aSBarry Smith static PetscErrorCode PetscContainerCtxDestroy_PetscFEGeom(void **ctx)
53d71ae5a4SJacob Faibussowitsch {
5449abdd8aSBarry Smith   PetscFEGeom *geom = (PetscFEGeom *)*ctx;
559b6f715bSMatthew G. Knepley 
569b6f715bSMatthew G. Knepley   PetscFunctionBegin;
579566063dSJacob Faibussowitsch   PetscCall(PetscFEGeomDestroy(&geom));
583ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
599b6f715bSMatthew G. Knepley }
609b6f715bSMatthew G. Knepley 
61d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexGetFEGeom(DMField coordField, IS pointIS, PetscQuadrature quad, PetscBool faceData, PetscFEGeom **geom)
62d71ae5a4SJacob Faibussowitsch {
639b6f715bSMatthew G. Knepley   char           composeStr[33] = {0};
649b6f715bSMatthew G. Knepley   PetscObjectId  id;
659b6f715bSMatthew G. Knepley   PetscContainer container;
669b6f715bSMatthew G. Knepley 
679b6f715bSMatthew G. Knepley   PetscFunctionBegin;
689566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetId((PetscObject)quad, &id));
6963a3b9bcSJacob Faibussowitsch   PetscCall(PetscSNPrintf(composeStr, 32, "DMPlexGetFEGeom_%" PetscInt64_FMT "\n", id));
709566063dSJacob Faibussowitsch   PetscCall(PetscObjectQuery((PetscObject)pointIS, composeStr, (PetscObject *)&container));
719b6f715bSMatthew G. Knepley   if (container) {
729566063dSJacob Faibussowitsch     PetscCall(PetscContainerGetPointer(container, (void **)geom));
739b6f715bSMatthew G. Knepley   } else {
749566063dSJacob Faibussowitsch     PetscCall(DMFieldCreateFEGeom(coordField, pointIS, quad, faceData, geom));
759566063dSJacob Faibussowitsch     PetscCall(PetscContainerCreate(PETSC_COMM_SELF, &container));
769566063dSJacob Faibussowitsch     PetscCall(PetscContainerSetPointer(container, (void *)*geom));
7749abdd8aSBarry Smith     PetscCall(PetscContainerSetCtxDestroy(container, PetscContainerCtxDestroy_PetscFEGeom));
789566063dSJacob Faibussowitsch     PetscCall(PetscObjectCompose((PetscObject)pointIS, composeStr, (PetscObject)container));
799566063dSJacob Faibussowitsch     PetscCall(PetscContainerDestroy(&container));
809b6f715bSMatthew G. Knepley   }
813ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
829b6f715bSMatthew G. Knepley }
839b6f715bSMatthew G. Knepley 
84d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexRestoreFEGeom(DMField coordField, IS pointIS, PetscQuadrature quad, PetscBool faceData, PetscFEGeom **geom)
85d71ae5a4SJacob Faibussowitsch {
869b6f715bSMatthew G. Knepley   PetscFunctionBegin;
879b6f715bSMatthew G. Knepley   *geom = NULL;
883ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
899b6f715bSMatthew G. Knepley }
909b6f715bSMatthew G. Knepley 
9146fa42a0SMatthew G. Knepley /*@
9246fa42a0SMatthew G. Knepley   DMPlexGetScale - Get the scale for the specified fundamental unit
9346fa42a0SMatthew G. Knepley 
9420f4b53cSBarry Smith   Not Collective
9546fa42a0SMatthew G. Knepley 
964165533cSJose E. Roman   Input Parameters:
97a1cb98faSBarry Smith + dm   - the `DM`
9846fa42a0SMatthew G. Knepley - unit - The SI unit
9946fa42a0SMatthew G. Knepley 
1004165533cSJose E. Roman   Output Parameter:
10146fa42a0SMatthew G. Knepley . scale - The value used to scale all quantities with this unit
10246fa42a0SMatthew G. Knepley 
10346fa42a0SMatthew G. Knepley   Level: advanced
10446fa42a0SMatthew G. Knepley 
1051cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexSetScale()`, `PetscUnit`
10646fa42a0SMatthew G. Knepley @*/
107d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexGetScale(DM dm, PetscUnit unit, PetscReal *scale)
108d71ae5a4SJacob Faibussowitsch {
109cb1e1211SMatthew G Knepley   DM_Plex *mesh = (DM_Plex *)dm->data;
110cb1e1211SMatthew G Knepley 
111cb1e1211SMatthew G Knepley   PetscFunctionBegin;
112cb1e1211SMatthew G Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
1134f572ea9SToby Isaac   PetscAssertPointer(scale, 3);
114cb1e1211SMatthew G Knepley   *scale = mesh->scale[unit];
1153ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
116cb1e1211SMatthew G Knepley }
117cb1e1211SMatthew G Knepley 
11846fa42a0SMatthew G. Knepley /*@
11946fa42a0SMatthew G. Knepley   DMPlexSetScale - Set the scale for the specified fundamental unit
12046fa42a0SMatthew G. Knepley 
12120f4b53cSBarry Smith   Not Collective
12246fa42a0SMatthew G. Knepley 
1234165533cSJose E. Roman   Input Parameters:
124a1cb98faSBarry Smith + dm    - the `DM`
12546fa42a0SMatthew G. Knepley . unit  - The SI unit
12646fa42a0SMatthew G. Knepley - scale - The value used to scale all quantities with this unit
12746fa42a0SMatthew G. Knepley 
12846fa42a0SMatthew G. Knepley   Level: advanced
12946fa42a0SMatthew G. Knepley 
1301cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexGetScale()`, `PetscUnit`
13146fa42a0SMatthew G. Knepley @*/
132d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexSetScale(DM dm, PetscUnit unit, PetscReal scale)
133d71ae5a4SJacob Faibussowitsch {
134cb1e1211SMatthew G Knepley   DM_Plex *mesh = (DM_Plex *)dm->data;
135cb1e1211SMatthew G Knepley 
136cb1e1211SMatthew G Knepley   PetscFunctionBegin;
137cb1e1211SMatthew G Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
138cb1e1211SMatthew G Knepley   mesh->scale[unit] = scale;
1393ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
140cb1e1211SMatthew G Knepley }
141cb1e1211SMatthew G Knepley 
142d2b2dc1eSMatthew G. Knepley PetscErrorCode DMPlexGetUseCeed_Plex(DM dm, PetscBool *useCeed)
143d2b2dc1eSMatthew G. Knepley {
144d2b2dc1eSMatthew G. Knepley   DM_Plex *mesh = (DM_Plex *)dm->data;
145d2b2dc1eSMatthew G. Knepley 
146d2b2dc1eSMatthew G. Knepley   PetscFunctionBegin;
147d2b2dc1eSMatthew G. Knepley   *useCeed = mesh->useCeed;
148d2b2dc1eSMatthew G. Knepley   PetscFunctionReturn(PETSC_SUCCESS);
149d2b2dc1eSMatthew G. Knepley }
150d2b2dc1eSMatthew G. Knepley PetscErrorCode DMPlexSetUseCeed_Plex(DM dm, PetscBool useCeed)
151d2b2dc1eSMatthew G. Knepley {
152d2b2dc1eSMatthew G. Knepley   DM_Plex *mesh = (DM_Plex *)dm->data;
153d2b2dc1eSMatthew G. Knepley 
154d2b2dc1eSMatthew G. Knepley   PetscFunctionBegin;
155d2b2dc1eSMatthew G. Knepley   mesh->useCeed = useCeed;
156d2b2dc1eSMatthew G. Knepley   PetscFunctionReturn(PETSC_SUCCESS);
157d2b2dc1eSMatthew G. Knepley }
158d2b2dc1eSMatthew G. Knepley 
159d2b2dc1eSMatthew G. Knepley /*@
160d2b2dc1eSMatthew G. Knepley   DMPlexGetUseCeed - Get flag for using the LibCEED backend
161d2b2dc1eSMatthew G. Knepley 
162d2b2dc1eSMatthew G. Knepley   Not collective
163d2b2dc1eSMatthew G. Knepley 
164d2b2dc1eSMatthew G. Knepley   Input Parameter:
165d2b2dc1eSMatthew G. Knepley . dm - The `DM`
166d2b2dc1eSMatthew G. Knepley 
167d2b2dc1eSMatthew G. Knepley   Output Parameter:
168d2b2dc1eSMatthew G. Knepley . useCeed - The flag
169d2b2dc1eSMatthew G. Knepley 
170d2b2dc1eSMatthew G. Knepley   Level: intermediate
171d2b2dc1eSMatthew G. Knepley 
172d2b2dc1eSMatthew G. Knepley .seealso: `DMPlexSetUseCeed()`
173d2b2dc1eSMatthew G. Knepley @*/
174d2b2dc1eSMatthew G. Knepley PetscErrorCode DMPlexGetUseCeed(DM dm, PetscBool *useCeed)
175d2b2dc1eSMatthew G. Knepley {
176d2b2dc1eSMatthew G. Knepley   PetscFunctionBegin;
177d2b2dc1eSMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
178d2b2dc1eSMatthew G. Knepley   PetscAssertPointer(useCeed, 2);
179d2b2dc1eSMatthew G. Knepley   *useCeed = PETSC_FALSE;
180d2b2dc1eSMatthew G. Knepley   PetscTryMethod(dm, "DMPlexGetUseCeed_C", (DM, PetscBool *), (dm, useCeed));
181d2b2dc1eSMatthew G. Knepley   PetscFunctionReturn(PETSC_SUCCESS);
182d2b2dc1eSMatthew G. Knepley }
183d2b2dc1eSMatthew G. Knepley 
184d2b2dc1eSMatthew G. Knepley /*@
185d2b2dc1eSMatthew G. Knepley   DMPlexSetUseCeed - Set flag for using the LibCEED backend
186d2b2dc1eSMatthew G. Knepley 
187d2b2dc1eSMatthew G. Knepley   Not collective
188d2b2dc1eSMatthew G. Knepley 
189d2b2dc1eSMatthew G. Knepley   Input Parameters:
190d2b2dc1eSMatthew G. Knepley + dm      - The `DM`
191d2b2dc1eSMatthew G. Knepley - useCeed - The flag
192d2b2dc1eSMatthew G. Knepley 
193d2b2dc1eSMatthew G. Knepley   Level: intermediate
194d2b2dc1eSMatthew G. Knepley 
195fe8e7dddSPierre Jolivet .seealso: `DMPlexGetUseCeed()`
196d2b2dc1eSMatthew G. Knepley @*/
197d2b2dc1eSMatthew G. Knepley PetscErrorCode DMPlexSetUseCeed(DM dm, PetscBool useCeed)
198d2b2dc1eSMatthew G. Knepley {
199d2b2dc1eSMatthew G. Knepley   PetscFunctionBegin;
200d2b2dc1eSMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
201d2b2dc1eSMatthew G. Knepley   PetscValidLogicalCollectiveBool(dm, useCeed, 2);
202d2b2dc1eSMatthew G. Knepley   PetscUseMethod(dm, "DMPlexSetUseCeed_C", (DM, PetscBool), (dm, useCeed));
203d2b2dc1eSMatthew G. Knepley   PetscFunctionReturn(PETSC_SUCCESS);
204d2b2dc1eSMatthew G. Knepley }
205d2b2dc1eSMatthew G. Knepley 
206e8e188d2SZach Atkins /*@
207e8e188d2SZach Atkins   DMPlexGetUseMatClosurePermutation - Get flag for using a closure permutation for matrix insertion
208e8e188d2SZach Atkins 
209e8e188d2SZach Atkins   Not collective
210e8e188d2SZach Atkins 
211e8e188d2SZach Atkins   Input Parameter:
212e8e188d2SZach Atkins . dm - The `DM`
213e8e188d2SZach Atkins 
214e8e188d2SZach Atkins   Output Parameter:
215e8e188d2SZach Atkins . useClPerm - The flag
216e8e188d2SZach Atkins 
217e8e188d2SZach Atkins   Level: intermediate
218e8e188d2SZach Atkins 
219e8e188d2SZach Atkins .seealso: `DMPlexSetUseMatClosurePermutation()`
220e8e188d2SZach Atkins @*/
221e8e188d2SZach Atkins PetscErrorCode DMPlexGetUseMatClosurePermutation(DM dm, PetscBool *useClPerm)
222e8e188d2SZach Atkins {
223e8e188d2SZach Atkins   DM_Plex *mesh = (DM_Plex *)dm->data;
224e8e188d2SZach Atkins 
225e8e188d2SZach Atkins   PetscFunctionBegin;
226e8e188d2SZach Atkins   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
227e8e188d2SZach Atkins   PetscAssertPointer(useClPerm, 2);
228e8e188d2SZach Atkins   *useClPerm = mesh->useMatClPerm;
229e8e188d2SZach Atkins   PetscFunctionReturn(PETSC_SUCCESS);
230e8e188d2SZach Atkins }
231e8e188d2SZach Atkins 
232e8e188d2SZach Atkins /*@
233e8e188d2SZach Atkins   DMPlexSetUseMatClosurePermutation - Set flag for using a closure permutation for matrix insertion
234e8e188d2SZach Atkins 
235e8e188d2SZach Atkins   Not collective
236e8e188d2SZach Atkins 
237e8e188d2SZach Atkins   Input Parameters:
238e8e188d2SZach Atkins + dm        - The `DM`
239e8e188d2SZach Atkins - useClPerm - The flag
240e8e188d2SZach Atkins 
241e8e188d2SZach Atkins   Level: intermediate
242e8e188d2SZach Atkins 
243e8e188d2SZach Atkins .seealso: `DMPlexGetUseMatClosurePermutation()`
244e8e188d2SZach Atkins @*/
245e8e188d2SZach Atkins PetscErrorCode DMPlexSetUseMatClosurePermutation(DM dm, PetscBool useClPerm)
246e8e188d2SZach Atkins {
247e8e188d2SZach Atkins   DM_Plex *mesh = (DM_Plex *)dm->data;
248e8e188d2SZach Atkins 
249e8e188d2SZach Atkins   PetscFunctionBegin;
250e8e188d2SZach Atkins   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
251e8e188d2SZach Atkins   PetscValidLogicalCollectiveBool(dm, useClPerm, 2);
252e8e188d2SZach Atkins   mesh->useMatClPerm = useClPerm;
253e8e188d2SZach Atkins   PetscFunctionReturn(PETSC_SUCCESS);
254e8e188d2SZach Atkins }
255e8e188d2SZach Atkins 
256d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexProjectRigidBody_Private(PetscInt dim, PetscReal t, const PetscReal X[], PetscInt Nc, PetscScalar *mode, void *ctx)
257d71ae5a4SJacob Faibussowitsch {
2589371c9d4SSatish Balay   const PetscInt eps[3][3][3] = {
2599371c9d4SSatish Balay     {{0, 0, 0},  {0, 0, 1},  {0, -1, 0}},
2609371c9d4SSatish Balay     {{0, 0, -1}, {0, 0, 0},  {1, 0, 0} },
2619371c9d4SSatish Balay     {{0, 1, 0},  {-1, 0, 0}, {0, 0, 0} }
2629371c9d4SSatish Balay   };
263026175e5SToby Isaac   PetscInt *ctxInt = (PetscInt *)ctx;
264ad917190SMatthew G. Knepley   PetscInt  dim2   = ctxInt[0];
265026175e5SToby Isaac   PetscInt  d      = ctxInt[1];
266026175e5SToby Isaac   PetscInt  i, j, k = dim > 2 ? d - dim : d;
267026175e5SToby Isaac 
268ad917190SMatthew G. Knepley   PetscFunctionBegin;
26963a3b9bcSJacob Faibussowitsch   PetscCheck(dim == dim2, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Input dimension %" PetscInt_FMT " does not match context dimension %" PetscInt_FMT, dim, dim2);
270026175e5SToby Isaac   for (i = 0; i < dim; i++) mode[i] = 0.;
271026175e5SToby Isaac   if (d < dim) {
27212adca46SMatthew G. Knepley     mode[d] = 1.; /* Translation along axis d */
273ad917190SMatthew G. Knepley   } else {
274026175e5SToby Isaac     for (i = 0; i < dim; i++) {
2759371c9d4SSatish Balay       for (j = 0; j < dim; j++) { mode[j] += eps[i][j][k] * X[i]; /* Rotation about axis d */ }
276026175e5SToby Isaac     }
277026175e5SToby Isaac   }
2783ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
279026175e5SToby Isaac }
280026175e5SToby Isaac 
281cc4e42d9SMartin Diehl /*@
28212adca46SMatthew G. Knepley   DMPlexCreateRigidBody - For the default global section, create rigid body modes by function space interpolation
283cb1e1211SMatthew G Knepley 
28420f4b53cSBarry Smith   Collective
285cb1e1211SMatthew G Knepley 
2864165533cSJose E. Roman   Input Parameters:
287a1cb98faSBarry Smith + dm    - the `DM`
28856cf3b9cSMatthew G. Knepley - field - The field number for the rigid body space, or 0 for the default
289cb1e1211SMatthew G Knepley 
2904165533cSJose E. Roman   Output Parameter:
291cb1e1211SMatthew G Knepley . sp - the null space
292cb1e1211SMatthew G Knepley 
293cb1e1211SMatthew G Knepley   Level: advanced
294cb1e1211SMatthew G Knepley 
295a1cb98faSBarry Smith   Note:
296a1cb98faSBarry Smith   This is necessary to provide a suitable coarse space for algebraic multigrid
297a1cb98faSBarry Smith 
2981cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `MatNullSpaceCreate()`, `PCGAMG`
299cb1e1211SMatthew G Knepley @*/
300d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexCreateRigidBody(DM dm, PetscInt field, MatNullSpace *sp)
301d71ae5a4SJacob Faibussowitsch {
30256cf3b9cSMatthew G. Knepley   PetscErrorCode (**func)(PetscInt, PetscReal, const PetscReal *, PetscInt, PetscScalar *, void *);
303cb1e1211SMatthew G Knepley   MPI_Comm     comm;
304026175e5SToby Isaac   Vec          mode[6];
305026175e5SToby Isaac   PetscSection section, globalSection;
30656cf3b9cSMatthew G. Knepley   PetscInt     dim, dimEmbed, Nf, n, m, mmin, d, i, j;
307db14aad5SMatthew G. Knepley   void       **ctxs;
308cb1e1211SMatthew G Knepley 
309cb1e1211SMatthew G Knepley   PetscFunctionBegin;
3109566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)dm, &comm));
3119566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dm, &dim));
3129566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateDim(dm, &dimEmbed));
3139566063dSJacob Faibussowitsch   PetscCall(DMGetNumFields(dm, &Nf));
31463a3b9bcSJacob Faibussowitsch   PetscCheck(!Nf || !(field < 0 || field >= Nf), comm, PETSC_ERR_ARG_OUTOFRANGE, "Field %" PetscInt_FMT " is not in [0, %" PetscInt_FMT ")", field, Nf);
31556cf3b9cSMatthew G. Knepley   if (dim == 1 && Nf < 2) {
3169566063dSJacob Faibussowitsch     PetscCall(MatNullSpaceCreate(comm, PETSC_TRUE, 0, NULL, sp));
3173ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
318cb1e1211SMatthew G Knepley   }
3199566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dm, &section));
3209566063dSJacob Faibussowitsch   PetscCall(DMGetGlobalSection(dm, &globalSection));
3219566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetConstrainedStorageSize(globalSection, &n));
322db14aad5SMatthew G. Knepley   PetscCall(PetscCalloc2(Nf, &func, Nf, &ctxs));
323b247467aSMatthew G. Knepley   m = (dim * (dim + 1)) / 2;
3249566063dSJacob Faibussowitsch   PetscCall(VecCreate(comm, &mode[0]));
3259566063dSJacob Faibussowitsch   PetscCall(VecSetType(mode[0], dm->vectype));
3269566063dSJacob Faibussowitsch   PetscCall(VecSetSizes(mode[0], n, PETSC_DETERMINE));
3279566063dSJacob Faibussowitsch   PetscCall(VecSetUp(mode[0]));
3289566063dSJacob Faibussowitsch   PetscCall(VecGetSize(mode[0], &n));
329b247467aSMatthew G. Knepley   mmin        = PetscMin(m, n);
33056cf3b9cSMatthew G. Knepley   func[field] = DMPlexProjectRigidBody_Private;
3319566063dSJacob Faibussowitsch   for (i = 1; i < m; ++i) PetscCall(VecDuplicate(mode[0], &mode[i]));
332026175e5SToby Isaac   for (d = 0; d < m; d++) {
333330485fdSToby Isaac     PetscInt ctx[2];
334cb1e1211SMatthew G Knepley 
335db14aad5SMatthew G. Knepley     ctxs[field] = (void *)(&ctx[0]);
3369d8fbdeaSMatthew G. Knepley     ctx[0]      = dimEmbed;
337330485fdSToby Isaac     ctx[1]      = d;
338db14aad5SMatthew G. Knepley     PetscCall(DMProjectFunction(dm, 0.0, func, ctxs, INSERT_VALUES, mode[d]));
339cb1e1211SMatthew G Knepley   }
3403b2202bfSJacob Faibussowitsch   /* Orthonormalize system */
341b50a2c0aSJacob Faibussowitsch   for (i = 0; i < mmin; ++i) {
342b77f2eeeSJacob Faibussowitsch     PetscScalar dots[6];
343b50a2c0aSJacob Faibussowitsch 
3449566063dSJacob Faibussowitsch     PetscCall(VecNormalize(mode[i], NULL));
3459566063dSJacob Faibussowitsch     PetscCall(VecMDot(mode[i], mmin - i - 1, mode + i + 1, dots + i + 1));
346b50a2c0aSJacob Faibussowitsch     for (j = i + 1; j < mmin; ++j) {
347b77f2eeeSJacob Faibussowitsch       dots[j] *= -1.0;
3489566063dSJacob Faibussowitsch       PetscCall(VecAXPY(mode[j], dots[j], mode[i]));
349b50a2c0aSJacob Faibussowitsch     }
350cb1e1211SMatthew G Knepley   }
3519566063dSJacob Faibussowitsch   PetscCall(MatNullSpaceCreate(comm, PETSC_FALSE, mmin, mode, sp));
3529566063dSJacob Faibussowitsch   for (i = 0; i < m; ++i) PetscCall(VecDestroy(&mode[i]));
353db14aad5SMatthew G. Knepley   PetscCall(PetscFree2(func, ctxs));
3543ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
355cb1e1211SMatthew G Knepley }
356cb1e1211SMatthew G Knepley 
357cc4e42d9SMartin Diehl /*@
35812adca46SMatthew G. Knepley   DMPlexCreateRigidBodies - For the default global section, create rigid body modes by function space interpolation
35912adca46SMatthew G. Knepley 
36020f4b53cSBarry Smith   Collective
36112adca46SMatthew G. Knepley 
3624165533cSJose E. Roman   Input Parameters:
363a1cb98faSBarry Smith + dm    - the `DM`
36412adca46SMatthew G. Knepley . nb    - The number of bodies
365a1cb98faSBarry Smith . label - The `DMLabel` marking each domain
36612adca46SMatthew G. Knepley . nids  - The number of ids per body
36712adca46SMatthew G. Knepley - ids   - An array of the label ids in sequence for each domain
36812adca46SMatthew G. Knepley 
3694165533cSJose E. Roman   Output Parameter:
37012adca46SMatthew G. Knepley . sp - the null space
37112adca46SMatthew G. Knepley 
37212adca46SMatthew G. Knepley   Level: advanced
37312adca46SMatthew G. Knepley 
374a1cb98faSBarry Smith   Note:
375a1cb98faSBarry Smith   This is necessary to provide a suitable coarse space for algebraic multigrid
376a1cb98faSBarry Smith 
3771cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `MatNullSpaceCreate()`
37812adca46SMatthew G. Knepley @*/
379d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexCreateRigidBodies(DM dm, PetscInt nb, DMLabel label, const PetscInt nids[], const PetscInt ids[], MatNullSpace *sp)
380d71ae5a4SJacob Faibussowitsch {
38112adca46SMatthew G. Knepley   MPI_Comm     comm;
38212adca46SMatthew G. Knepley   PetscSection section, globalSection;
38312adca46SMatthew G. Knepley   Vec         *mode;
38412adca46SMatthew G. Knepley   PetscScalar *dots;
38512adca46SMatthew G. Knepley   PetscInt     dim, dimEmbed, n, m, b, d, i, j, off;
38612adca46SMatthew G. Knepley 
38712adca46SMatthew G. Knepley   PetscFunctionBegin;
3889566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)dm, &comm));
3899566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dm, &dim));
3909566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateDim(dm, &dimEmbed));
3919566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dm, &section));
3929566063dSJacob Faibussowitsch   PetscCall(DMGetGlobalSection(dm, &globalSection));
3939566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetConstrainedStorageSize(globalSection, &n));
39412adca46SMatthew G. Knepley   m = nb * (dim * (dim + 1)) / 2;
3959566063dSJacob Faibussowitsch   PetscCall(PetscMalloc2(m, &mode, m, &dots));
3969566063dSJacob Faibussowitsch   PetscCall(VecCreate(comm, &mode[0]));
3979566063dSJacob Faibussowitsch   PetscCall(VecSetSizes(mode[0], n, PETSC_DETERMINE));
3989566063dSJacob Faibussowitsch   PetscCall(VecSetUp(mode[0]));
3999566063dSJacob Faibussowitsch   for (i = 1; i < m; ++i) PetscCall(VecDuplicate(mode[0], &mode[i]));
40012adca46SMatthew G. Knepley   for (b = 0, off = 0; b < nb; ++b) {
40112adca46SMatthew G. Knepley     for (d = 0; d < m / nb; ++d) {
40212adca46SMatthew G. Knepley       PetscInt ctx[2];
40312adca46SMatthew G. Knepley       PetscErrorCode (*func)(PetscInt, PetscReal, const PetscReal *, PetscInt, PetscScalar *, void *) = DMPlexProjectRigidBody_Private;
40412adca46SMatthew G. Knepley       void *voidctx                                                                                   = (void *)(&ctx[0]);
40512adca46SMatthew G. Knepley 
40612adca46SMatthew G. Knepley       ctx[0] = dimEmbed;
40712adca46SMatthew G. Knepley       ctx[1] = d;
4089566063dSJacob Faibussowitsch       PetscCall(DMProjectFunctionLabel(dm, 0.0, label, nids[b], &ids[off], 0, NULL, &func, &voidctx, INSERT_VALUES, mode[d]));
40912adca46SMatthew G. Knepley       off += nids[b];
41012adca46SMatthew G. Knepley     }
41112adca46SMatthew G. Knepley   }
4123b2202bfSJacob Faibussowitsch   /* Orthonormalize system */
413606c1a1cSJacob Faibussowitsch   for (i = 0; i < m; ++i) {
414b77f2eeeSJacob Faibussowitsch     PetscScalar dots[6];
4155a0e29b9SJacob Faibussowitsch 
4169566063dSJacob Faibussowitsch     PetscCall(VecNormalize(mode[i], NULL));
4179566063dSJacob Faibussowitsch     PetscCall(VecMDot(mode[i], m - i - 1, mode + i + 1, dots + i + 1));
4185a0e29b9SJacob Faibussowitsch     for (j = i + 1; j < m; ++j) {
419b77f2eeeSJacob Faibussowitsch       dots[j] *= -1.0;
4209566063dSJacob Faibussowitsch       PetscCall(VecAXPY(mode[j], dots[j], mode[i]));
4215a0e29b9SJacob Faibussowitsch     }
42212adca46SMatthew G. Knepley   }
4239566063dSJacob Faibussowitsch   PetscCall(MatNullSpaceCreate(comm, PETSC_FALSE, m, mode, sp));
4249566063dSJacob Faibussowitsch   for (i = 0; i < m; ++i) PetscCall(VecDestroy(&mode[i]));
4259566063dSJacob Faibussowitsch   PetscCall(PetscFree2(mode, dots));
4263ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
42712adca46SMatthew G. Knepley }
42812adca46SMatthew G. Knepley 
429b29cfa1cSToby Isaac /*@
430b29cfa1cSToby Isaac   DMPlexSetMaxProjectionHeight - In DMPlexProjectXXXLocal() functions, the projected values of a basis function's dofs
431b29cfa1cSToby Isaac   are computed by associating the basis function with one of the mesh points in its transitively-closed support, and
432a4e35b19SJacob Faibussowitsch   evaluating the dual space basis of that point.
433b29cfa1cSToby Isaac 
434b29cfa1cSToby Isaac   Input Parameters:
435a1cb98faSBarry Smith + dm     - the `DMPLEX` object
436b29cfa1cSToby Isaac - height - the maximum projection height >= 0
437b29cfa1cSToby Isaac 
438b29cfa1cSToby Isaac   Level: advanced
439b29cfa1cSToby Isaac 
440a4e35b19SJacob Faibussowitsch   Notes:
441a4e35b19SJacob Faibussowitsch   A basis function is associated with the point in its transitively-closed support whose mesh
442a4e35b19SJacob Faibussowitsch   height is highest (w.r.t. DAG height), but not greater than the maximum projection height,
443a4e35b19SJacob Faibussowitsch   which is set with this function.  By default, the maximum projection height is zero, which
444a4e35b19SJacob Faibussowitsch   means that only mesh cells are used to project basis functions.  A height of one, for
445a4e35b19SJacob Faibussowitsch   example, evaluates a cell-interior basis functions using its cells dual space basis, but all
446a4e35b19SJacob Faibussowitsch   other basis functions with the dual space basis of a face.
447a4e35b19SJacob Faibussowitsch 
4481cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexGetMaxProjectionHeight()`, `DMProjectFunctionLocal()`, `DMProjectFunctionLabelLocal()`
449b29cfa1cSToby Isaac @*/
450d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexSetMaxProjectionHeight(DM dm, PetscInt height)
451d71ae5a4SJacob Faibussowitsch {
452b29cfa1cSToby Isaac   DM_Plex *plex = (DM_Plex *)dm->data;
453b29cfa1cSToby Isaac 
454b29cfa1cSToby Isaac   PetscFunctionBegin;
455b29cfa1cSToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
456b29cfa1cSToby Isaac   plex->maxProjectionHeight = height;
4573ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
458b29cfa1cSToby Isaac }
459b29cfa1cSToby Isaac 
460b29cfa1cSToby Isaac /*@
461b29cfa1cSToby Isaac   DMPlexGetMaxProjectionHeight - Get the maximum height (w.r.t. DAG) of mesh points used to evaluate dual bases in
462b29cfa1cSToby Isaac   DMPlexProjectXXXLocal() functions.
463b29cfa1cSToby Isaac 
4642fe279fdSBarry Smith   Input Parameter:
465a1cb98faSBarry Smith . dm - the `DMPLEX` object
466b29cfa1cSToby Isaac 
4672fe279fdSBarry Smith   Output Parameter:
468b29cfa1cSToby Isaac . height - the maximum projection height
469b29cfa1cSToby Isaac 
470b29cfa1cSToby Isaac   Level: intermediate
471b29cfa1cSToby Isaac 
4721cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexSetMaxProjectionHeight()`, `DMProjectFunctionLocal()`, `DMProjectFunctionLabelLocal()`
473b29cfa1cSToby Isaac @*/
474d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexGetMaxProjectionHeight(DM dm, PetscInt *height)
475d71ae5a4SJacob Faibussowitsch {
476b29cfa1cSToby Isaac   DM_Plex *plex = (DM_Plex *)dm->data;
477b29cfa1cSToby Isaac 
478b29cfa1cSToby Isaac   PetscFunctionBegin;
479b29cfa1cSToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
480b29cfa1cSToby Isaac   *height = plex->maxProjectionHeight;
4813ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
482b29cfa1cSToby Isaac }
483b29cfa1cSToby Isaac 
484ca3d3a14SMatthew G. Knepley typedef struct {
485ca3d3a14SMatthew G. Knepley   PetscReal    alpha; /* The first Euler angle, and in 2D the only one */
486ca3d3a14SMatthew G. Knepley   PetscReal    beta;  /* The second Euler angle */
487ca3d3a14SMatthew G. Knepley   PetscReal    gamma; /* The third Euler angle */
488ca3d3a14SMatthew G. Knepley   PetscInt     dim;   /* The dimension of R */
489ca3d3a14SMatthew G. Knepley   PetscScalar *R;     /* The rotation matrix, transforming a vector in the local basis to the global basis */
490ca3d3a14SMatthew G. Knepley   PetscScalar *RT;    /* The transposed rotation matrix, transforming a vector in the global basis to the local basis */
491ca3d3a14SMatthew G. Knepley } RotCtx;
492ca3d3a14SMatthew G. Knepley 
493ca3d3a14SMatthew G. Knepley /*
494ca3d3a14SMatthew G. Knepley   Note: Following https://en.wikipedia.org/wiki/Euler_angles, we will specify Euler angles by extrinsic rotations, meaning that
495ca3d3a14SMatthew G. Knepley   we rotate with respect to a fixed initial coordinate system, the local basis (x-y-z). The global basis (X-Y-Z) is reached as follows:
496ca3d3a14SMatthew G. Knepley   $ The XYZ system rotates about the z axis by alpha. The X axis is now at angle alpha with respect to the x axis.
497ca3d3a14SMatthew G. Knepley   $ The XYZ system rotates again about the x axis by beta. The Z axis is now at angle beta with respect to the z axis.
498ca3d3a14SMatthew G. Knepley   $ The XYZ system rotates a third time about the z axis by gamma.
499ca3d3a14SMatthew G. Knepley */
500d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexBasisTransformSetUp_Rotation_Internal(DM dm, void *ctx)
501d71ae5a4SJacob Faibussowitsch {
502ca3d3a14SMatthew G. Knepley   RotCtx   *rc  = (RotCtx *)ctx;
503ca3d3a14SMatthew G. Knepley   PetscInt  dim = rc->dim;
504ca3d3a14SMatthew G. Knepley   PetscReal c1, s1, c2, s2, c3, s3;
505ca3d3a14SMatthew G. Knepley 
506ca3d3a14SMatthew G. Knepley   PetscFunctionBegin;
5079566063dSJacob Faibussowitsch   PetscCall(PetscMalloc2(PetscSqr(dim), &rc->R, PetscSqr(dim), &rc->RT));
508ca3d3a14SMatthew G. Knepley   switch (dim) {
509ca3d3a14SMatthew G. Knepley   case 2:
5109371c9d4SSatish Balay     c1       = PetscCosReal(rc->alpha);
5119371c9d4SSatish Balay     s1       = PetscSinReal(rc->alpha);
5129371c9d4SSatish Balay     rc->R[0] = c1;
5139371c9d4SSatish Balay     rc->R[1] = s1;
5149371c9d4SSatish Balay     rc->R[2] = -s1;
5159371c9d4SSatish Balay     rc->R[3] = c1;
5169566063dSJacob Faibussowitsch     PetscCall(PetscArraycpy(rc->RT, rc->R, PetscSqr(dim)));
517b458e8f1SJose E. Roman     DMPlex_Transpose2D_Internal(rc->RT);
518ca3d3a14SMatthew G. Knepley     break;
519ca3d3a14SMatthew G. Knepley   case 3:
5209371c9d4SSatish Balay     c1       = PetscCosReal(rc->alpha);
5219371c9d4SSatish Balay     s1       = PetscSinReal(rc->alpha);
5229371c9d4SSatish Balay     c2       = PetscCosReal(rc->beta);
5239371c9d4SSatish Balay     s2       = PetscSinReal(rc->beta);
5249371c9d4SSatish Balay     c3       = PetscCosReal(rc->gamma);
5259371c9d4SSatish Balay     s3       = PetscSinReal(rc->gamma);
5269371c9d4SSatish Balay     rc->R[0] = c1 * c3 - c2 * s1 * s3;
5279371c9d4SSatish Balay     rc->R[1] = c3 * s1 + c1 * c2 * s3;
5289371c9d4SSatish Balay     rc->R[2] = s2 * s3;
5299371c9d4SSatish Balay     rc->R[3] = -c1 * s3 - c2 * c3 * s1;
5309371c9d4SSatish Balay     rc->R[4] = c1 * c2 * c3 - s1 * s3;
5319371c9d4SSatish Balay     rc->R[5] = c3 * s2;
5329371c9d4SSatish Balay     rc->R[6] = s1 * s2;
5339371c9d4SSatish Balay     rc->R[7] = -c1 * s2;
5349371c9d4SSatish Balay     rc->R[8] = c2;
5359566063dSJacob Faibussowitsch     PetscCall(PetscArraycpy(rc->RT, rc->R, PetscSqr(dim)));
536b458e8f1SJose E. Roman     DMPlex_Transpose3D_Internal(rc->RT);
537ca3d3a14SMatthew G. Knepley     break;
538d71ae5a4SJacob Faibussowitsch   default:
539d71ae5a4SJacob Faibussowitsch     SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Dimension %" PetscInt_FMT " not supported", dim);
540ca3d3a14SMatthew G. Knepley   }
5413ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
542ca3d3a14SMatthew G. Knepley }
543ca3d3a14SMatthew G. Knepley 
544d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexBasisTransformDestroy_Rotation_Internal(DM dm, void *ctx)
545d71ae5a4SJacob Faibussowitsch {
546ca3d3a14SMatthew G. Knepley   RotCtx *rc = (RotCtx *)ctx;
547ca3d3a14SMatthew G. Knepley 
548ca3d3a14SMatthew G. Knepley   PetscFunctionBegin;
5499566063dSJacob Faibussowitsch   PetscCall(PetscFree2(rc->R, rc->RT));
5509566063dSJacob Faibussowitsch   PetscCall(PetscFree(rc));
5513ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
552ca3d3a14SMatthew G. Knepley }
553ca3d3a14SMatthew G. Knepley 
554d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexBasisTransformGetMatrix_Rotation_Internal(DM dm, const PetscReal x[], PetscBool l2g, const PetscScalar **A, void *ctx)
555d71ae5a4SJacob Faibussowitsch {
556ca3d3a14SMatthew G. Knepley   RotCtx *rc = (RotCtx *)ctx;
557ca3d3a14SMatthew G. Knepley 
558ca3d3a14SMatthew G. Knepley   PetscFunctionBeginHot;
5594f572ea9SToby Isaac   PetscAssertPointer(ctx, 5);
5609371c9d4SSatish Balay   if (l2g) {
5619371c9d4SSatish Balay     *A = rc->R;
5629371c9d4SSatish Balay   } else {
5639371c9d4SSatish Balay     *A = rc->RT;
5649371c9d4SSatish Balay   }
5653ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
566ca3d3a14SMatthew G. Knepley }
567ca3d3a14SMatthew G. Knepley 
568d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexBasisTransformApplyReal_Internal(DM dm, const PetscReal x[], PetscBool l2g, PetscInt dim, const PetscReal *y, PetscReal *z, void *ctx)
569d71ae5a4SJacob Faibussowitsch {
570ec277c0fSMatthew G. Knepley   PetscFunctionBegin;
571ab6a9622SMatthew G. Knepley #if defined(PETSC_USE_COMPLEX)
572ab6a9622SMatthew G. Knepley   switch (dim) {
5739371c9d4SSatish Balay   case 2: {
57427104ee2SJacob Faibussowitsch     PetscScalar yt[2] = {y[0], y[1]}, zt[2] = {0.0, 0.0};
575ab6a9622SMatthew G. Knepley 
5769566063dSJacob Faibussowitsch     PetscCall(DMPlexBasisTransformApply_Internal(dm, x, l2g, dim, yt, zt, ctx));
5779371c9d4SSatish Balay     z[0] = PetscRealPart(zt[0]);
5789371c9d4SSatish Balay     z[1] = PetscRealPart(zt[1]);
5799371c9d4SSatish Balay   } break;
5809371c9d4SSatish Balay   case 3: {
58127104ee2SJacob Faibussowitsch     PetscScalar yt[3] = {y[0], y[1], y[2]}, zt[3] = {0.0, 0.0, 0.0};
582ab6a9622SMatthew G. Knepley 
5839566063dSJacob Faibussowitsch     PetscCall(DMPlexBasisTransformApply_Internal(dm, x, l2g, dim, yt, zt, ctx));
5849371c9d4SSatish Balay     z[0] = PetscRealPart(zt[0]);
5859371c9d4SSatish Balay     z[1] = PetscRealPart(zt[1]);
5869371c9d4SSatish Balay     z[2] = PetscRealPart(zt[2]);
5879371c9d4SSatish Balay   } break;
588ab6a9622SMatthew G. Knepley   }
589ab6a9622SMatthew G. Knepley #else
5909566063dSJacob Faibussowitsch   PetscCall(DMPlexBasisTransformApply_Internal(dm, x, l2g, dim, y, z, ctx));
591ab6a9622SMatthew G. Knepley #endif
5923ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
593ab6a9622SMatthew G. Knepley }
594ab6a9622SMatthew G. Knepley 
595d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexBasisTransformApply_Internal(DM dm, const PetscReal x[], PetscBool l2g, PetscInt dim, const PetscScalar *y, PetscScalar *z, void *ctx)
596d71ae5a4SJacob Faibussowitsch {
597ca3d3a14SMatthew G. Knepley   const PetscScalar *A;
598ca3d3a14SMatthew G. Knepley 
599ca3d3a14SMatthew G. Knepley   PetscFunctionBeginHot;
6009566063dSJacob Faibussowitsch   PetscCall((*dm->transformGetMatrix)(dm, x, l2g, &A, ctx));
601ca3d3a14SMatthew G. Knepley   switch (dim) {
602d71ae5a4SJacob Faibussowitsch   case 2:
603d71ae5a4SJacob Faibussowitsch     DMPlex_Mult2D_Internal(A, 1, y, z);
604d71ae5a4SJacob Faibussowitsch     break;
605d71ae5a4SJacob Faibussowitsch   case 3:
606d71ae5a4SJacob Faibussowitsch     DMPlex_Mult3D_Internal(A, 1, y, z);
607d71ae5a4SJacob Faibussowitsch     break;
608ca3d3a14SMatthew G. Knepley   }
6093ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
610ca3d3a14SMatthew G. Knepley }
611ca3d3a14SMatthew G. Knepley 
612d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexBasisTransformField_Internal(DM dm, DM tdm, Vec tv, PetscInt p, PetscInt f, PetscBool l2g, PetscScalar *a)
613d71ae5a4SJacob Faibussowitsch {
614ca3d3a14SMatthew G. Knepley   PetscSection       ts;
615ca3d3a14SMatthew G. Knepley   const PetscScalar *ta, *tva;
616ca3d3a14SMatthew G. Knepley   PetscInt           dof;
617ca3d3a14SMatthew G. Knepley 
618ca3d3a14SMatthew G. Knepley   PetscFunctionBeginHot;
6199566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(tdm, &ts));
6209566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetFieldDof(ts, p, f, &dof));
6219566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(tv, &ta));
6229566063dSJacob Faibussowitsch   PetscCall(DMPlexPointLocalFieldRead(tdm, p, f, ta, &tva));
623ca3d3a14SMatthew G. Knepley   if (l2g) {
624ca3d3a14SMatthew G. Knepley     switch (dof) {
625d71ae5a4SJacob Faibussowitsch     case 4:
626d71ae5a4SJacob Faibussowitsch       DMPlex_Mult2D_Internal(tva, 1, a, a);
627d71ae5a4SJacob Faibussowitsch       break;
628d71ae5a4SJacob Faibussowitsch     case 9:
629d71ae5a4SJacob Faibussowitsch       DMPlex_Mult3D_Internal(tva, 1, a, a);
630d71ae5a4SJacob Faibussowitsch       break;
631ca3d3a14SMatthew G. Knepley     }
632ca3d3a14SMatthew G. Knepley   } else {
633ca3d3a14SMatthew G. Knepley     switch (dof) {
634d71ae5a4SJacob Faibussowitsch     case 4:
635d71ae5a4SJacob Faibussowitsch       DMPlex_MultTranspose2D_Internal(tva, 1, a, a);
636d71ae5a4SJacob Faibussowitsch       break;
637d71ae5a4SJacob Faibussowitsch     case 9:
638d71ae5a4SJacob Faibussowitsch       DMPlex_MultTranspose3D_Internal(tva, 1, a, a);
639d71ae5a4SJacob Faibussowitsch       break;
640ca3d3a14SMatthew G. Knepley     }
641ca3d3a14SMatthew G. Knepley   }
6429566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(tv, &ta));
6433ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
644ca3d3a14SMatthew G. Knepley }
645ca3d3a14SMatthew G. Knepley 
646d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexBasisTransformFieldTensor_Internal(DM dm, DM tdm, Vec tv, PetscInt pf, PetscInt f, PetscInt pg, PetscInt g, PetscBool l2g, PetscInt lda, PetscScalar *a)
647d71ae5a4SJacob Faibussowitsch {
648ca3d3a14SMatthew G. Knepley   PetscSection       s, ts;
649ca3d3a14SMatthew G. Knepley   const PetscScalar *ta, *tvaf, *tvag;
650ca3d3a14SMatthew G. Knepley   PetscInt           fdof, gdof, fpdof, gpdof;
651ca3d3a14SMatthew G. Knepley 
652ca3d3a14SMatthew G. Knepley   PetscFunctionBeginHot;
6539566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dm, &s));
6549566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(tdm, &ts));
6559566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetFieldDof(s, pf, f, &fpdof));
6569566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetFieldDof(s, pg, g, &gpdof));
6579566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetFieldDof(ts, pf, f, &fdof));
6589566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetFieldDof(ts, pg, g, &gdof));
6599566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(tv, &ta));
6609566063dSJacob Faibussowitsch   PetscCall(DMPlexPointLocalFieldRead(tdm, pf, f, ta, &tvaf));
6619566063dSJacob Faibussowitsch   PetscCall(DMPlexPointLocalFieldRead(tdm, pg, g, ta, &tvag));
662ca3d3a14SMatthew G. Knepley   if (l2g) {
663ca3d3a14SMatthew G. Knepley     switch (fdof) {
664d71ae5a4SJacob Faibussowitsch     case 4:
665d71ae5a4SJacob Faibussowitsch       DMPlex_MatMult2D_Internal(tvaf, gpdof, lda, a, a);
666d71ae5a4SJacob Faibussowitsch       break;
667d71ae5a4SJacob Faibussowitsch     case 9:
668d71ae5a4SJacob Faibussowitsch       DMPlex_MatMult3D_Internal(tvaf, gpdof, lda, a, a);
669d71ae5a4SJacob Faibussowitsch       break;
670ca3d3a14SMatthew G. Knepley     }
671ca3d3a14SMatthew G. Knepley     switch (gdof) {
672d71ae5a4SJacob Faibussowitsch     case 4:
673d71ae5a4SJacob Faibussowitsch       DMPlex_MatMultTransposeLeft2D_Internal(tvag, fpdof, lda, a, a);
674d71ae5a4SJacob Faibussowitsch       break;
675d71ae5a4SJacob Faibussowitsch     case 9:
676d71ae5a4SJacob Faibussowitsch       DMPlex_MatMultTransposeLeft3D_Internal(tvag, fpdof, lda, a, a);
677d71ae5a4SJacob Faibussowitsch       break;
678ca3d3a14SMatthew G. Knepley     }
679ca3d3a14SMatthew G. Knepley   } else {
680ca3d3a14SMatthew G. Knepley     switch (fdof) {
681d71ae5a4SJacob Faibussowitsch     case 4:
682d71ae5a4SJacob Faibussowitsch       DMPlex_MatMultTranspose2D_Internal(tvaf, gpdof, lda, a, a);
683d71ae5a4SJacob Faibussowitsch       break;
684d71ae5a4SJacob Faibussowitsch     case 9:
685d71ae5a4SJacob Faibussowitsch       DMPlex_MatMultTranspose3D_Internal(tvaf, gpdof, lda, a, a);
686d71ae5a4SJacob Faibussowitsch       break;
687ca3d3a14SMatthew G. Knepley     }
688ca3d3a14SMatthew G. Knepley     switch (gdof) {
689d71ae5a4SJacob Faibussowitsch     case 4:
690d71ae5a4SJacob Faibussowitsch       DMPlex_MatMultLeft2D_Internal(tvag, fpdof, lda, a, a);
691d71ae5a4SJacob Faibussowitsch       break;
692d71ae5a4SJacob Faibussowitsch     case 9:
693d71ae5a4SJacob Faibussowitsch       DMPlex_MatMultLeft3D_Internal(tvag, fpdof, lda, a, a);
694d71ae5a4SJacob Faibussowitsch       break;
695ca3d3a14SMatthew G. Knepley     }
696ca3d3a14SMatthew G. Knepley   }
6979566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(tv, &ta));
6983ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
699ca3d3a14SMatthew G. Knepley }
700ca3d3a14SMatthew G. Knepley 
701d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexBasisTransformPoint_Internal(DM dm, DM tdm, Vec tv, PetscInt p, PetscBool fieldActive[], PetscBool l2g, PetscScalar *a)
702d71ae5a4SJacob Faibussowitsch {
703ca3d3a14SMatthew G. Knepley   PetscSection    s;
704ca3d3a14SMatthew G. Knepley   PetscSection    clSection;
705ca3d3a14SMatthew G. Knepley   IS              clPoints;
706ca3d3a14SMatthew G. Knepley   const PetscInt *clp;
707ca3d3a14SMatthew G. Knepley   PetscInt       *points = NULL;
708ca3d3a14SMatthew G. Knepley   PetscInt        Nf, f, Np, cp, dof, d = 0;
709ca3d3a14SMatthew G. Knepley 
710ca3d3a14SMatthew G. Knepley   PetscFunctionBegin;
7119566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dm, &s));
7129566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetNumFields(s, &Nf));
71307218a29SMatthew G. Knepley   PetscCall(DMPlexGetCompressedClosure(dm, s, p, 0, &Np, &points, &clSection, &clPoints, &clp));
714ca3d3a14SMatthew G. Knepley   for (f = 0; f < Nf; ++f) {
715ca3d3a14SMatthew G. Knepley     for (cp = 0; cp < Np * 2; cp += 2) {
7169566063dSJacob Faibussowitsch       PetscCall(PetscSectionGetFieldDof(s, points[cp], f, &dof));
717ca3d3a14SMatthew G. Knepley       if (!dof) continue;
7189566063dSJacob Faibussowitsch       if (fieldActive[f]) PetscCall(DMPlexBasisTransformField_Internal(dm, tdm, tv, points[cp], f, l2g, &a[d]));
719ca3d3a14SMatthew G. Knepley       d += dof;
720ca3d3a14SMatthew G. Knepley     }
721ca3d3a14SMatthew G. Knepley   }
7229566063dSJacob Faibussowitsch   PetscCall(DMPlexRestoreCompressedClosure(dm, s, p, &Np, &points, &clSection, &clPoints, &clp));
7233ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
724ca3d3a14SMatthew G. Knepley }
725ca3d3a14SMatthew G. Knepley 
726d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexBasisTransformPointTensor_Internal(DM dm, DM tdm, Vec tv, PetscInt p, PetscBool l2g, PetscInt lda, PetscScalar *a)
727d71ae5a4SJacob Faibussowitsch {
728ca3d3a14SMatthew G. Knepley   PetscSection    s;
729ca3d3a14SMatthew G. Knepley   PetscSection    clSection;
730ca3d3a14SMatthew G. Knepley   IS              clPoints;
731ca3d3a14SMatthew G. Knepley   const PetscInt *clp;
732ca3d3a14SMatthew G. Knepley   PetscInt       *points = NULL;
7338bdb3c71SMatthew G. Knepley   PetscInt        Nf, f, g, Np, cpf, cpg, fdof, gdof, r, c = 0;
734ca3d3a14SMatthew G. Knepley 
735ca3d3a14SMatthew G. Knepley   PetscFunctionBegin;
7369566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dm, &s));
7379566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetNumFields(s, &Nf));
73807218a29SMatthew G. Knepley   PetscCall(DMPlexGetCompressedClosure(dm, s, p, 0, &Np, &points, &clSection, &clPoints, &clp));
739ca3d3a14SMatthew G. Knepley   for (f = 0, r = 0; f < Nf; ++f) {
740ca3d3a14SMatthew G. Knepley     for (cpf = 0; cpf < Np * 2; cpf += 2) {
7419566063dSJacob Faibussowitsch       PetscCall(PetscSectionGetFieldDof(s, points[cpf], f, &fdof));
742ca3d3a14SMatthew G. Knepley       for (g = 0, c = 0; g < Nf; ++g) {
743ca3d3a14SMatthew G. Knepley         for (cpg = 0; cpg < Np * 2; cpg += 2) {
7449566063dSJacob Faibussowitsch           PetscCall(PetscSectionGetFieldDof(s, points[cpg], g, &gdof));
7459566063dSJacob Faibussowitsch           PetscCall(DMPlexBasisTransformFieldTensor_Internal(dm, tdm, tv, points[cpf], f, points[cpg], g, l2g, lda, &a[r * lda + c]));
746ca3d3a14SMatthew G. Knepley           c += gdof;
747ca3d3a14SMatthew G. Knepley         }
748ca3d3a14SMatthew G. Knepley       }
74963a3b9bcSJacob Faibussowitsch       PetscCheck(c == lda, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid number of columns %" PetscInt_FMT " should be %" PetscInt_FMT, c, lda);
750ca3d3a14SMatthew G. Knepley       r += fdof;
751ca3d3a14SMatthew G. Knepley     }
752ca3d3a14SMatthew G. Knepley   }
75363a3b9bcSJacob Faibussowitsch   PetscCheck(r == lda, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid number of rows %" PetscInt_FMT " should be %" PetscInt_FMT, c, lda);
7549566063dSJacob Faibussowitsch   PetscCall(DMPlexRestoreCompressedClosure(dm, s, p, &Np, &points, &clSection, &clPoints, &clp));
7553ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
756ca3d3a14SMatthew G. Knepley }
757ca3d3a14SMatthew G. Knepley 
758d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexBasisTransform_Internal(DM dm, Vec lv, PetscBool l2g)
759d71ae5a4SJacob Faibussowitsch {
760ca3d3a14SMatthew G. Knepley   DM                 tdm;
761ca3d3a14SMatthew G. Knepley   Vec                tv;
762ca3d3a14SMatthew G. Knepley   PetscSection       ts, s;
763ca3d3a14SMatthew G. Knepley   const PetscScalar *ta;
764ca3d3a14SMatthew G. Knepley   PetscScalar       *a, *va;
765ca3d3a14SMatthew G. Knepley   PetscInt           pStart, pEnd, p, Nf, f;
766ca3d3a14SMatthew G. Knepley 
767ca3d3a14SMatthew G. Knepley   PetscFunctionBegin;
7689566063dSJacob Faibussowitsch   PetscCall(DMGetBasisTransformDM_Internal(dm, &tdm));
7699566063dSJacob Faibussowitsch   PetscCall(DMGetBasisTransformVec_Internal(dm, &tv));
7709566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(tdm, &ts));
7719566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dm, &s));
7729566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetChart(s, &pStart, &pEnd));
7739566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetNumFields(s, &Nf));
7749566063dSJacob Faibussowitsch   PetscCall(VecGetArray(lv, &a));
7759566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(tv, &ta));
776ca3d3a14SMatthew G. Knepley   for (p = pStart; p < pEnd; ++p) {
777ca3d3a14SMatthew G. Knepley     for (f = 0; f < Nf; ++f) {
7789566063dSJacob Faibussowitsch       PetscCall(DMPlexPointLocalFieldRef(dm, p, f, a, &va));
7799566063dSJacob Faibussowitsch       PetscCall(DMPlexBasisTransformField_Internal(dm, tdm, tv, p, f, l2g, va));
780ca3d3a14SMatthew G. Knepley     }
781ca3d3a14SMatthew G. Knepley   }
7829566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(lv, &a));
7839566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(tv, &ta));
7843ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
785ca3d3a14SMatthew G. Knepley }
786ca3d3a14SMatthew G. Knepley 
787ca3d3a14SMatthew G. Knepley /*@
788ca3d3a14SMatthew G. Knepley   DMPlexGlobalToLocalBasis - Transform the values in the given local vector from the global basis to the local basis
789ca3d3a14SMatthew G. Knepley 
790ca3d3a14SMatthew G. Knepley   Input Parameters:
791a1cb98faSBarry Smith + dm - The `DM`
792ca3d3a14SMatthew G. Knepley - lv - A local vector with values in the global basis
793ca3d3a14SMatthew G. Knepley 
7942fe279fdSBarry Smith   Output Parameter:
795ca3d3a14SMatthew G. Knepley . lv - A local vector with values in the local basis
796ca3d3a14SMatthew G. Knepley 
797ca3d3a14SMatthew G. Knepley   Level: developer
798ca3d3a14SMatthew G. Knepley 
799a1cb98faSBarry Smith   Note:
800a1cb98faSBarry Smith   This method is only intended to be called inside `DMGlobalToLocal()`. It is unlikely that a user will have a local vector full of coefficients for the global basis unless they are reimplementing GlobalToLocal.
801a1cb98faSBarry Smith 
8021cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexLocalToGlobalBasis()`, `DMGetLocalSection()`, `DMPlexCreateBasisRotation()`
803ca3d3a14SMatthew G. Knepley @*/
804d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexGlobalToLocalBasis(DM dm, Vec lv)
805d71ae5a4SJacob Faibussowitsch {
806ca3d3a14SMatthew G. Knepley   PetscFunctionBegin;
807ca3d3a14SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
808ca3d3a14SMatthew G. Knepley   PetscValidHeaderSpecific(lv, VEC_CLASSID, 2);
8099566063dSJacob Faibussowitsch   PetscCall(DMPlexBasisTransform_Internal(dm, lv, PETSC_FALSE));
8103ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
811ca3d3a14SMatthew G. Knepley }
812ca3d3a14SMatthew G. Knepley 
813ca3d3a14SMatthew G. Knepley /*@
814ca3d3a14SMatthew G. Knepley   DMPlexLocalToGlobalBasis - Transform the values in the given local vector from the local basis to the global basis
815ca3d3a14SMatthew G. Knepley 
816ca3d3a14SMatthew G. Knepley   Input Parameters:
817a1cb98faSBarry Smith + dm - The `DM`
818ca3d3a14SMatthew G. Knepley - lv - A local vector with values in the local basis
819ca3d3a14SMatthew G. Knepley 
8202fe279fdSBarry Smith   Output Parameter:
821ca3d3a14SMatthew G. Knepley . lv - A local vector with values in the global basis
822ca3d3a14SMatthew G. Knepley 
823ca3d3a14SMatthew G. Knepley   Level: developer
824ca3d3a14SMatthew G. Knepley 
825a1cb98faSBarry Smith   Note:
826a1cb98faSBarry Smith   This method is only intended to be called inside `DMGlobalToLocal()`. It is unlikely that a user would want a local vector full of coefficients for the global basis unless they are reimplementing GlobalToLocal.
827a1cb98faSBarry Smith 
8281cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexGlobalToLocalBasis()`, `DMGetLocalSection()`, `DMPlexCreateBasisRotation()`
829ca3d3a14SMatthew G. Knepley @*/
830d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexLocalToGlobalBasis(DM dm, Vec lv)
831d71ae5a4SJacob Faibussowitsch {
832ca3d3a14SMatthew G. Knepley   PetscFunctionBegin;
833ca3d3a14SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
834ca3d3a14SMatthew G. Knepley   PetscValidHeaderSpecific(lv, VEC_CLASSID, 2);
8359566063dSJacob Faibussowitsch   PetscCall(DMPlexBasisTransform_Internal(dm, lv, PETSC_TRUE));
8363ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
837ca3d3a14SMatthew G. Knepley }
838ca3d3a14SMatthew G. Knepley 
839ca3d3a14SMatthew G. Knepley /*@
840ca3d3a14SMatthew G. Knepley   DMPlexCreateBasisRotation - Create an internal transformation from the global basis, used to specify boundary conditions
841ca3d3a14SMatthew G. Knepley   and global solutions, to a local basis, appropriate for discretization integrals and assembly.
842ca3d3a14SMatthew G. Knepley 
843ca3d3a14SMatthew G. Knepley   Input Parameters:
844a1cb98faSBarry Smith + dm    - The `DM`
845ca3d3a14SMatthew G. Knepley . alpha - The first Euler angle, and in 2D the only one
846ca3d3a14SMatthew G. Knepley . beta  - The second Euler angle
847f0fc11ceSJed Brown - gamma - The third Euler angle
848ca3d3a14SMatthew G. Knepley 
849ca3d3a14SMatthew G. Knepley   Level: developer
850ca3d3a14SMatthew G. Knepley 
851a1cb98faSBarry Smith   Note:
852a1cb98faSBarry Smith   Following https://en.wikipedia.org/wiki/Euler_angles, we will specify Euler angles by extrinsic rotations, meaning that
853a1cb98faSBarry Smith   we rotate with respect to a fixed initial coordinate system, the local basis (x-y-z). The global basis (X-Y-Z) is reached as follows
854a1cb98faSBarry Smith .vb
855a1cb98faSBarry Smith    The XYZ system rotates about the z axis by alpha. The X axis is now at angle alpha with respect to the x axis.
856a1cb98faSBarry Smith    The XYZ system rotates again about the x axis by beta. The Z axis is now at angle beta with respect to the z axis.
857a1cb98faSBarry Smith    The XYZ system rotates a third time about the z axis by gamma.
858a1cb98faSBarry Smith .ve
859a1cb98faSBarry Smith 
8601cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexGlobalToLocalBasis()`, `DMPlexLocalToGlobalBasis()`
861ca3d3a14SMatthew G. Knepley @*/
862d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexCreateBasisRotation(DM dm, PetscReal alpha, PetscReal beta, PetscReal gamma)
863d71ae5a4SJacob Faibussowitsch {
864ca3d3a14SMatthew G. Knepley   RotCtx  *rc;
865ca3d3a14SMatthew G. Knepley   PetscInt cdim;
866ca3d3a14SMatthew G. Knepley 
867362febeeSStefano Zampini   PetscFunctionBegin;
8689566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateDim(dm, &cdim));
8699566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(1, &rc));
870ca3d3a14SMatthew G. Knepley   dm->transformCtx       = rc;
871ca3d3a14SMatthew G. Knepley   dm->transformSetUp     = DMPlexBasisTransformSetUp_Rotation_Internal;
872ca3d3a14SMatthew G. Knepley   dm->transformDestroy   = DMPlexBasisTransformDestroy_Rotation_Internal;
873ca3d3a14SMatthew G. Knepley   dm->transformGetMatrix = DMPlexBasisTransformGetMatrix_Rotation_Internal;
874ca3d3a14SMatthew G. Knepley   rc->dim                = cdim;
875ca3d3a14SMatthew G. Knepley   rc->alpha              = alpha;
876ca3d3a14SMatthew G. Knepley   rc->beta               = beta;
877ca3d3a14SMatthew G. Knepley   rc->gamma              = gamma;
8789566063dSJacob Faibussowitsch   PetscCall((*dm->transformSetUp)(dm, dm->transformCtx));
8799566063dSJacob Faibussowitsch   PetscCall(DMConstructBasisTransform_Internal(dm));
8803ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
881ca3d3a14SMatthew G. Knepley }
882ca3d3a14SMatthew G. Knepley 
883b278463cSMatthew G. Knepley /*@C
884ece3a9fcSMatthew G. Knepley   DMPlexInsertBoundaryValuesEssential - Insert boundary values into a local vector using a function of the coordinates
885b278463cSMatthew G. Knepley 
886b278463cSMatthew G. Knepley   Input Parameters:
887a1cb98faSBarry Smith + dm     - The `DM`, with a `PetscDS` that matches the problem being constrained
888b278463cSMatthew G. Knepley . time   - The time
889b278463cSMatthew G. Knepley . field  - The field to constrain
8901c531cf8SMatthew G. Knepley . Nc     - The number of constrained field components, or 0 for all components
89120f4b53cSBarry Smith . comps  - An array of constrained component numbers, or `NULL` for all components
892a1cb98faSBarry Smith . label  - The `DMLabel` defining constrained points
893a1cb98faSBarry Smith . numids - The number of `DMLabel` ids for constrained points
894b278463cSMatthew G. Knepley . ids    - An array of ids for constrained points
895b278463cSMatthew G. Knepley . func   - A pointwise function giving boundary values
896b278463cSMatthew G. Knepley - ctx    - An optional user context for bcFunc
897b278463cSMatthew G. Knepley 
898b278463cSMatthew G. Knepley   Output Parameter:
899b278463cSMatthew G. Knepley . locX - A local vector to receives the boundary values
900b278463cSMatthew G. Knepley 
901b278463cSMatthew G. Knepley   Level: developer
902b278463cSMatthew G. Knepley 
9031cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMLabel`, `DMPlexInsertBoundaryValuesEssentialField()`, `DMPlexInsertBoundaryValuesEssentialBdField()`, `DMAddBoundary()`
904b278463cSMatthew G. Knepley @*/
905d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexInsertBoundaryValuesEssential(DM dm, PetscReal time, PetscInt field, PetscInt Nc, const PetscInt comps[], DMLabel label, PetscInt numids, const PetscInt ids[], PetscErrorCode (*func)(PetscInt, PetscReal, const PetscReal[], PetscInt, PetscScalar *, void *), void *ctx, Vec locX)
906d71ae5a4SJacob Faibussowitsch {
9070163fd50SMatthew G. Knepley   PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal x[], PetscInt, PetscScalar *u, void *ctx);
90855f2e967SMatthew G. Knepley   void   **ctxs;
909d7ddef95SMatthew G. Knepley   PetscInt numFields;
910d7ddef95SMatthew G. Knepley 
911d7ddef95SMatthew G. Knepley   PetscFunctionBegin;
9129566063dSJacob Faibussowitsch   PetscCall(DMGetNumFields(dm, &numFields));
9139566063dSJacob Faibussowitsch   PetscCall(PetscCalloc2(numFields, &funcs, numFields, &ctxs));
914d7ddef95SMatthew G. Knepley   funcs[field] = func;
915d7ddef95SMatthew G. Knepley   ctxs[field]  = ctx;
9169566063dSJacob Faibussowitsch   PetscCall(DMProjectFunctionLabelLocal(dm, time, label, numids, ids, Nc, comps, funcs, ctxs, INSERT_BC_VALUES, locX));
9179566063dSJacob Faibussowitsch   PetscCall(PetscFree2(funcs, ctxs));
9183ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
919d7ddef95SMatthew G. Knepley }
920d7ddef95SMatthew G. Knepley 
921b278463cSMatthew G. Knepley /*@C
922ece3a9fcSMatthew G. Knepley   DMPlexInsertBoundaryValuesEssentialField - Insert boundary values into a local vector using a function of the coordinates and field data
923b278463cSMatthew G. Knepley 
924b278463cSMatthew G. Knepley   Input Parameters:
925a1cb98faSBarry Smith + dm     - The `DM`, with a `PetscDS` that matches the problem being constrained
926b278463cSMatthew G. Knepley . time   - The time
927b278463cSMatthew G. Knepley . locU   - A local vector with the input solution values
928b278463cSMatthew G. Knepley . field  - The field to constrain
9291c531cf8SMatthew G. Knepley . Nc     - The number of constrained field components, or 0 for all components
93020f4b53cSBarry Smith . comps  - An array of constrained component numbers, or `NULL` for all components
931a1cb98faSBarry Smith . label  - The `DMLabel` defining constrained points
932a1cb98faSBarry Smith . numids - The number of `DMLabel` ids for constrained points
933b278463cSMatthew G. Knepley . ids    - An array of ids for constrained points
934b278463cSMatthew G. Knepley . func   - A pointwise function giving boundary values
935b278463cSMatthew G. Knepley - ctx    - An optional user context for bcFunc
936b278463cSMatthew G. Knepley 
937b278463cSMatthew G. Knepley   Output Parameter:
938b278463cSMatthew G. Knepley . locX - A local vector to receives the boundary values
939b278463cSMatthew G. Knepley 
940b278463cSMatthew G. Knepley   Level: developer
941b278463cSMatthew G. Knepley 
9421cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexInsertBoundaryValuesEssential()`, `DMPlexInsertBoundaryValuesEssentialBdField()`, `DMAddBoundary()`
943b278463cSMatthew G. Knepley @*/
944d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexInsertBoundaryValuesEssentialField(DM dm, PetscReal time, Vec locU, PetscInt field, PetscInt Nc, const PetscInt comps[], DMLabel label, PetscInt numids, const PetscInt ids[], void (*func)(PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], PetscReal, const PetscReal[], PetscInt, const PetscScalar[], PetscScalar[]), void *ctx, Vec locX)
945d71ae5a4SJacob Faibussowitsch {
9469371c9d4SSatish Balay   void (**funcs)(PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], PetscReal, const PetscReal[], PetscInt, const PetscScalar[], PetscScalar[]);
947c60e475cSMatthew G. Knepley   void   **ctxs;
948c60e475cSMatthew G. Knepley   PetscInt numFields;
949c60e475cSMatthew G. Knepley 
950c60e475cSMatthew G. Knepley   PetscFunctionBegin;
9519566063dSJacob Faibussowitsch   PetscCall(DMGetNumFields(dm, &numFields));
9529566063dSJacob Faibussowitsch   PetscCall(PetscCalloc2(numFields, &funcs, numFields, &ctxs));
953c60e475cSMatthew G. Knepley   funcs[field] = func;
954c60e475cSMatthew G. Knepley   ctxs[field]  = ctx;
9559566063dSJacob Faibussowitsch   PetscCall(DMProjectFieldLabelLocal(dm, time, label, numids, ids, Nc, comps, locU, funcs, INSERT_BC_VALUES, locX));
9569566063dSJacob Faibussowitsch   PetscCall(PetscFree2(funcs, ctxs));
9573ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
958c60e475cSMatthew G. Knepley }
959c60e475cSMatthew G. Knepley 
960b278463cSMatthew G. Knepley /*@C
961d5b43468SJose E. Roman   DMPlexInsertBoundaryValuesEssentialBdField - Insert boundary values into a local vector using a function of the coordinates and boundary field data
962ece3a9fcSMatthew G. Knepley 
96320f4b53cSBarry Smith   Collective
964ece3a9fcSMatthew G. Knepley 
965ece3a9fcSMatthew G. Knepley   Input Parameters:
966a1cb98faSBarry Smith + dm     - The `DM`, with a `PetscDS` that matches the problem being constrained
967ece3a9fcSMatthew G. Knepley . time   - The time
968ece3a9fcSMatthew G. Knepley . locU   - A local vector with the input solution values
969ece3a9fcSMatthew G. Knepley . field  - The field to constrain
970ece3a9fcSMatthew G. Knepley . Nc     - The number of constrained field components, or 0 for all components
97120f4b53cSBarry Smith . comps  - An array of constrained component numbers, or `NULL` for all components
972a1cb98faSBarry Smith . label  - The `DMLabel` defining constrained points
973a1cb98faSBarry Smith . numids - The number of `DMLabel` ids for constrained points
974ece3a9fcSMatthew G. Knepley . ids    - An array of ids for constrained points
97520f4b53cSBarry Smith . func   - A pointwise function giving boundary values, the calling sequence is given in `DMProjectBdFieldLabelLocal()`
97620f4b53cSBarry Smith - ctx    - An optional user context for `func`
977ece3a9fcSMatthew G. Knepley 
978ece3a9fcSMatthew G. Knepley   Output Parameter:
979ece3a9fcSMatthew G. Knepley . locX - A local vector to receive the boundary values
980ece3a9fcSMatthew G. Knepley 
981ece3a9fcSMatthew G. Knepley   Level: developer
982ece3a9fcSMatthew G. Knepley 
9831cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMProjectBdFieldLabelLocal()`, `DMPlexInsertBoundaryValuesEssential()`, `DMPlexInsertBoundaryValuesEssentialField()`, `DMAddBoundary()`
984ece3a9fcSMatthew G. Knepley @*/
985d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexInsertBoundaryValuesEssentialBdField(DM dm, PetscReal time, Vec locU, PetscInt field, PetscInt Nc, const PetscInt comps[], DMLabel label, PetscInt numids, const PetscInt ids[], void (*func)(PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], PetscReal, const PetscReal[], const PetscReal[], PetscInt, const PetscScalar[], PetscScalar[]), void *ctx, Vec locX)
986d71ae5a4SJacob Faibussowitsch {
9879371c9d4SSatish Balay   void (**funcs)(PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], PetscReal, const PetscReal[], const PetscReal[], PetscInt, const PetscScalar[], PetscScalar[]);
988ece3a9fcSMatthew G. Knepley   void   **ctxs;
989ece3a9fcSMatthew G. Knepley   PetscInt numFields;
990ece3a9fcSMatthew G. Knepley 
991ece3a9fcSMatthew G. Knepley   PetscFunctionBegin;
9929566063dSJacob Faibussowitsch   PetscCall(DMGetNumFields(dm, &numFields));
9939566063dSJacob Faibussowitsch   PetscCall(PetscCalloc2(numFields, &funcs, numFields, &ctxs));
994ece3a9fcSMatthew G. Knepley   funcs[field] = func;
995ece3a9fcSMatthew G. Knepley   ctxs[field]  = ctx;
9969566063dSJacob Faibussowitsch   PetscCall(DMProjectBdFieldLabelLocal(dm, time, label, numids, ids, Nc, comps, locU, funcs, INSERT_BC_VALUES, locX));
9979566063dSJacob Faibussowitsch   PetscCall(PetscFree2(funcs, ctxs));
9983ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
999ece3a9fcSMatthew G. Knepley }
1000ece3a9fcSMatthew G. Knepley 
1001ece3a9fcSMatthew G. Knepley /*@C
1002b278463cSMatthew G. Knepley   DMPlexInsertBoundaryValuesRiemann - Insert boundary values into a local vector
1003b278463cSMatthew G. Knepley 
1004b278463cSMatthew G. Knepley   Input Parameters:
1005a1cb98faSBarry Smith + dm           - The `DM`, with a `PetscDS` that matches the problem being constrained
1006b278463cSMatthew G. Knepley . time         - The time
1007b278463cSMatthew G. Knepley . faceGeometry - A vector with the FVM face geometry information
1008b278463cSMatthew G. Knepley . cellGeometry - A vector with the FVM cell geometry information
1009b278463cSMatthew G. Knepley . Grad         - A vector with the FVM cell gradient information
1010b278463cSMatthew G. Knepley . field        - The field to constrain
10111c531cf8SMatthew G. Knepley . Nc           - The number of constrained field components, or 0 for all components
101220f4b53cSBarry Smith . comps        - An array of constrained component numbers, or `NULL` for all components
1013a1cb98faSBarry Smith . label        - The `DMLabel` defining constrained points
1014a1cb98faSBarry Smith . numids       - The number of `DMLabel` ids for constrained points
1015b278463cSMatthew G. Knepley . ids          - An array of ids for constrained points
1016b278463cSMatthew G. Knepley . func         - A pointwise function giving boundary values
1017b278463cSMatthew G. Knepley - ctx          - An optional user context for bcFunc
1018b278463cSMatthew G. Knepley 
1019b278463cSMatthew G. Knepley   Output Parameter:
1020b278463cSMatthew G. Knepley . locX - A local vector to receives the boundary values
1021b278463cSMatthew G. Knepley 
1022b278463cSMatthew G. Knepley   Level: developer
1023b278463cSMatthew G. Knepley 
1024a1cb98faSBarry Smith   Note:
1025a1cb98faSBarry Smith   This implementation currently ignores the numcomps/comps argument from `DMAddBoundary()`
1026a1cb98faSBarry Smith 
10271cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexInsertBoundaryValuesEssential()`, `DMPlexInsertBoundaryValuesEssentialField()`, `DMAddBoundary()`
1028b278463cSMatthew G. Knepley @*/
1029d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexInsertBoundaryValuesRiemann(DM dm, PetscReal time, Vec faceGeometry, Vec cellGeometry, Vec Grad, PetscInt field, PetscInt Nc, const PetscInt comps[], DMLabel label, PetscInt numids, const PetscInt ids[], PetscErrorCode (*func)(PetscReal, const PetscReal *, const PetscReal *, const PetscScalar *, PetscScalar *, void *), void *ctx, Vec locX)
1030d71ae5a4SJacob Faibussowitsch {
103161f58d28SMatthew G. Knepley   PetscDS            prob;
1032da97024aSMatthew G. Knepley   PetscSF            sf;
1033d7ddef95SMatthew G. Knepley   DM                 dmFace, dmCell, dmGrad;
103420369375SToby Isaac   const PetscScalar *facegeom, *cellgeom = NULL, *grad;
1035da97024aSMatthew G. Knepley   const PetscInt    *leaves;
1036d7ddef95SMatthew G. Knepley   PetscScalar       *x, *fx;
1037520b3818SMatthew G. Knepley   PetscInt           dim, nleaves, loc, fStart, fEnd, pdim, i;
10383ba16761SJacob Faibussowitsch   PetscErrorCode     ierru = PETSC_SUCCESS;
1039d7ddef95SMatthew G. Knepley 
1040d7ddef95SMatthew G. Knepley   PetscFunctionBegin;
10419566063dSJacob Faibussowitsch   PetscCall(DMGetPointSF(dm, &sf));
10429566063dSJacob Faibussowitsch   PetscCall(PetscSFGetGraph(sf, NULL, &nleaves, &leaves, NULL));
1043da97024aSMatthew G. Knepley   nleaves = PetscMax(0, nleaves);
10449566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dm, &dim));
10459566063dSJacob Faibussowitsch   PetscCall(DMPlexGetHeightStratum(dm, 1, &fStart, &fEnd));
10469566063dSJacob Faibussowitsch   PetscCall(DMGetDS(dm, &prob));
10479566063dSJacob Faibussowitsch   PetscCall(VecGetDM(faceGeometry, &dmFace));
10489566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(faceGeometry, &facegeom));
104920369375SToby Isaac   if (cellGeometry) {
10509566063dSJacob Faibussowitsch     PetscCall(VecGetDM(cellGeometry, &dmCell));
10519566063dSJacob Faibussowitsch     PetscCall(VecGetArrayRead(cellGeometry, &cellgeom));
105220369375SToby Isaac   }
1053d7ddef95SMatthew G. Knepley   if (Grad) {
1054c0a6632aSMatthew G. Knepley     PetscFV fv;
1055c0a6632aSMatthew G. Knepley 
10569566063dSJacob Faibussowitsch     PetscCall(PetscDSGetDiscretization(prob, field, (PetscObject *)&fv));
10579566063dSJacob Faibussowitsch     PetscCall(VecGetDM(Grad, &dmGrad));
10589566063dSJacob Faibussowitsch     PetscCall(VecGetArrayRead(Grad, &grad));
10599566063dSJacob Faibussowitsch     PetscCall(PetscFVGetNumComponents(fv, &pdim));
10609566063dSJacob Faibussowitsch     PetscCall(DMGetWorkArray(dm, pdim, MPIU_SCALAR, &fx));
1061d7ddef95SMatthew G. Knepley   }
10629566063dSJacob Faibussowitsch   PetscCall(VecGetArray(locX, &x));
1063d7ddef95SMatthew G. Knepley   for (i = 0; i < numids; ++i) {
1064d7ddef95SMatthew G. Knepley     IS              faceIS;
1065d7ddef95SMatthew G. Knepley     const PetscInt *faces;
1066d7ddef95SMatthew G. Knepley     PetscInt        numFaces, f;
1067d7ddef95SMatthew G. Knepley 
10689566063dSJacob Faibussowitsch     PetscCall(DMLabelGetStratumIS(label, ids[i], &faceIS));
1069d7ddef95SMatthew G. Knepley     if (!faceIS) continue; /* No points with that id on this process */
10709566063dSJacob Faibussowitsch     PetscCall(ISGetLocalSize(faceIS, &numFaces));
10719566063dSJacob Faibussowitsch     PetscCall(ISGetIndices(faceIS, &faces));
1072d7ddef95SMatthew G. Knepley     for (f = 0; f < numFaces; ++f) {
1073d7ddef95SMatthew G. Knepley       const PetscInt   face = faces[f], *cells;
1074640bce14SSatish Balay       PetscFVFaceGeom *fg;
1075d7ddef95SMatthew G. Knepley 
1076d7ddef95SMatthew G. Knepley       if ((face < fStart) || (face >= fEnd)) continue; /* Refinement adds non-faces to labels */
10779566063dSJacob Faibussowitsch       PetscCall(PetscFindInt(face, nleaves, (PetscInt *)leaves, &loc));
1078da97024aSMatthew G. Knepley       if (loc >= 0) continue;
10799566063dSJacob Faibussowitsch       PetscCall(DMPlexPointLocalRead(dmFace, face, facegeom, &fg));
10809566063dSJacob Faibussowitsch       PetscCall(DMPlexGetSupport(dm, face, &cells));
1081d7ddef95SMatthew G. Knepley       if (Grad) {
1082640bce14SSatish Balay         PetscFVCellGeom *cg;
1083640bce14SSatish Balay         PetscScalar     *cx, *cgrad;
1084d7ddef95SMatthew G. Knepley         PetscScalar     *xG;
1085d7ddef95SMatthew G. Knepley         PetscReal        dx[3];
1086d7ddef95SMatthew G. Knepley         PetscInt         d;
1087d7ddef95SMatthew G. Knepley 
10889566063dSJacob Faibussowitsch         PetscCall(DMPlexPointLocalRead(dmCell, cells[0], cellgeom, &cg));
10899566063dSJacob Faibussowitsch         PetscCall(DMPlexPointLocalRead(dm, cells[0], x, &cx));
10909566063dSJacob Faibussowitsch         PetscCall(DMPlexPointLocalRead(dmGrad, cells[0], grad, &cgrad));
10919566063dSJacob Faibussowitsch         PetscCall(DMPlexPointLocalFieldRef(dm, cells[1], field, x, &xG));
1092d7ddef95SMatthew G. Knepley         DMPlex_WaxpyD_Internal(dim, -1, cg->centroid, fg->centroid, dx);
1093d7ddef95SMatthew G. Knepley         for (d = 0; d < pdim; ++d) fx[d] = cx[d] + DMPlex_DotD_Internal(dim, &cgrad[d * dim], dx);
10949566063dSJacob Faibussowitsch         PetscCall((*func)(time, fg->centroid, fg->normal, fx, xG, ctx));
1095d7ddef95SMatthew G. Knepley       } else {
1096640bce14SSatish Balay         PetscScalar *xI;
1097d7ddef95SMatthew G. Knepley         PetscScalar *xG;
1098d7ddef95SMatthew G. Knepley 
10999566063dSJacob Faibussowitsch         PetscCall(DMPlexPointLocalRead(dm, cells[0], x, &xI));
11009566063dSJacob Faibussowitsch         PetscCall(DMPlexPointLocalFieldRef(dm, cells[1], field, x, &xG));
1101e735a8a9SMatthew G. Knepley         ierru = (*func)(time, fg->centroid, fg->normal, xI, xG, ctx);
1102e735a8a9SMatthew G. Knepley         if (ierru) {
11039566063dSJacob Faibussowitsch           PetscCall(ISRestoreIndices(faceIS, &faces));
11049566063dSJacob Faibussowitsch           PetscCall(ISDestroy(&faceIS));
1105e735a8a9SMatthew G. Knepley           goto cleanup;
1106e735a8a9SMatthew G. Knepley         }
1107d7ddef95SMatthew G. Knepley       }
1108d7ddef95SMatthew G. Knepley     }
11099566063dSJacob Faibussowitsch     PetscCall(ISRestoreIndices(faceIS, &faces));
11109566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&faceIS));
1111d7ddef95SMatthew G. Knepley   }
1112e735a8a9SMatthew G. Knepley cleanup:
11139566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(locX, &x));
1114d7ddef95SMatthew G. Knepley   if (Grad) {
11159566063dSJacob Faibussowitsch     PetscCall(DMRestoreWorkArray(dm, pdim, MPIU_SCALAR, &fx));
11169566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayRead(Grad, &grad));
1117d7ddef95SMatthew G. Knepley   }
11189566063dSJacob Faibussowitsch   if (cellGeometry) PetscCall(VecRestoreArrayRead(cellGeometry, &cellgeom));
11199566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(faceGeometry, &facegeom));
11209566063dSJacob Faibussowitsch   PetscCall(ierru);
11213ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1122d7ddef95SMatthew G. Knepley }
1123d7ddef95SMatthew G. Knepley 
1124d71ae5a4SJacob Faibussowitsch static PetscErrorCode zero(PetscInt dim, PetscReal time, const PetscReal x[], PetscInt Nc, PetscScalar *u, void *ctx)
1125d71ae5a4SJacob Faibussowitsch {
11260c364540SMatthew G. Knepley   PetscInt c;
11270c364540SMatthew G. Knepley   for (c = 0; c < Nc; ++c) u[c] = 0.0;
11283ba16761SJacob Faibussowitsch   return PETSC_SUCCESS;
11290c364540SMatthew G. Knepley }
11300c364540SMatthew G. Knepley 
1131d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexInsertBoundaryValues_Plex(DM dm, PetscBool insertEssential, Vec locX, PetscReal time, Vec faceGeomFVM, Vec cellGeomFVM, Vec gradFVM)
1132d71ae5a4SJacob Faibussowitsch {
11330c364540SMatthew G. Knepley   PetscObject isZero;
1134e5e52638SMatthew G. Knepley   PetscDS     prob;
1135d7ddef95SMatthew G. Knepley   PetscInt    numBd, b;
113655f2e967SMatthew G. Knepley 
113755f2e967SMatthew G. Knepley   PetscFunctionBegin;
11389566063dSJacob Faibussowitsch   PetscCall(DMGetDS(dm, &prob));
11399566063dSJacob Faibussowitsch   PetscCall(PetscDSGetNumBoundary(prob, &numBd));
11409566063dSJacob Faibussowitsch   PetscCall(PetscObjectQuery((PetscObject)locX, "__Vec_bc_zero__", &isZero));
1141450c7a9fSMatthew G. Knepley   PetscCall(PetscDSUpdateBoundaryLabels(prob, dm));
114255f2e967SMatthew G. Knepley   for (b = 0; b < numBd; ++b) {
114345480ffeSMatthew G. Knepley     PetscWeakForm           wf;
1144f971fd6bSMatthew G. Knepley     DMBoundaryConditionType type;
114545480ffeSMatthew G. Knepley     const char             *name;
1146d7ddef95SMatthew G. Knepley     DMLabel                 label;
11471c531cf8SMatthew G. Knepley     PetscInt                field, Nc;
11481c531cf8SMatthew G. Knepley     const PetscInt         *comps;
1149d7ddef95SMatthew G. Knepley     PetscObject             obj;
1150d7ddef95SMatthew G. Knepley     PetscClassId            id;
115145480ffeSMatthew G. Knepley     void (*bvfunc)(void);
1152d7ddef95SMatthew G. Knepley     PetscInt        numids;
1153d7ddef95SMatthew G. Knepley     const PetscInt *ids;
115455f2e967SMatthew G. Knepley     void           *ctx;
115555f2e967SMatthew G. Knepley 
11569566063dSJacob Faibussowitsch     PetscCall(PetscDSGetBoundary(prob, b, &wf, &type, &name, &label, &numids, &ids, &field, &Nc, &comps, &bvfunc, NULL, &ctx));
1157f971fd6bSMatthew G. Knepley     if (insertEssential != (type & DM_BC_ESSENTIAL)) continue;
11589566063dSJacob Faibussowitsch     PetscCall(DMGetField(dm, field, NULL, &obj));
11599566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetClassId(obj, &id));
1160d7ddef95SMatthew G. Knepley     if (id == PETSCFE_CLASSID) {
1161c60e475cSMatthew G. Knepley       switch (type) {
1162c60e475cSMatthew G. Knepley         /* for FEM, there is no insertion to be done for non-essential boundary conditions */
11639371c9d4SSatish Balay       case DM_BC_ESSENTIAL: {
11648434afd1SBarry Smith         PetscSimplePointFn *func = (PetscSimplePointFn *)bvfunc;
116545480ffeSMatthew G. Knepley 
116645480ffeSMatthew G. Knepley         if (isZero) func = zero;
11679566063dSJacob Faibussowitsch         PetscCall(DMPlexLabelAddCells(dm, label));
11689566063dSJacob Faibussowitsch         PetscCall(DMPlexInsertBoundaryValuesEssential(dm, time, field, Nc, comps, label, numids, ids, func, ctx, locX));
11699566063dSJacob Faibussowitsch         PetscCall(DMPlexLabelClearCells(dm, label));
11709371c9d4SSatish Balay       } break;
11719371c9d4SSatish Balay       case DM_BC_ESSENTIAL_FIELD: {
117245480ffeSMatthew G. Knepley         PetscPointFunc func = (PetscPointFunc)bvfunc;
117345480ffeSMatthew G. Knepley 
11749566063dSJacob Faibussowitsch         PetscCall(DMPlexLabelAddCells(dm, label));
11759566063dSJacob Faibussowitsch         PetscCall(DMPlexInsertBoundaryValuesEssentialField(dm, time, locX, field, Nc, comps, label, numids, ids, func, ctx, locX));
11769566063dSJacob Faibussowitsch         PetscCall(DMPlexLabelClearCells(dm, label));
11779371c9d4SSatish Balay       } break;
1178d71ae5a4SJacob Faibussowitsch       default:
1179d71ae5a4SJacob Faibussowitsch         break;
1180c60e475cSMatthew G. Knepley       }
1181d7ddef95SMatthew G. Knepley     } else if (id == PETSCFV_CLASSID) {
118245480ffeSMatthew G. Knepley       {
118345480ffeSMatthew G. Knepley         PetscErrorCode (*func)(PetscReal, const PetscReal *, const PetscReal *, const PetscScalar *, PetscScalar *, void *) = (PetscErrorCode (*)(PetscReal, const PetscReal *, const PetscReal *, const PetscScalar *, PetscScalar *, void *))bvfunc;
118445480ffeSMatthew G. Knepley 
118543ea7facSMatthew G. Knepley         if (!faceGeomFVM) continue;
11869566063dSJacob Faibussowitsch         PetscCall(DMPlexInsertBoundaryValuesRiemann(dm, time, faceGeomFVM, cellGeomFVM, gradFVM, field, Nc, comps, label, numids, ids, func, ctx, locX));
118745480ffeSMatthew G. Knepley       }
118863a3b9bcSJacob Faibussowitsch     } else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, field);
118955f2e967SMatthew G. Knepley   }
11903ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
119155f2e967SMatthew G. Knepley }
119255f2e967SMatthew G. Knepley 
1193d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexInsertTimeDerivativeBoundaryValues_Plex(DM dm, PetscBool insertEssential, Vec locX, PetscReal time, Vec faceGeomFVM, Vec cellGeomFVM, Vec gradFVM)
1194d71ae5a4SJacob Faibussowitsch {
119556cf3b9cSMatthew G. Knepley   PetscObject isZero;
119656cf3b9cSMatthew G. Knepley   PetscDS     prob;
119756cf3b9cSMatthew G. Knepley   PetscInt    numBd, b;
119856cf3b9cSMatthew G. Knepley 
119956cf3b9cSMatthew G. Knepley   PetscFunctionBegin;
12003ba16761SJacob Faibussowitsch   if (!locX) PetscFunctionReturn(PETSC_SUCCESS);
12019566063dSJacob Faibussowitsch   PetscCall(DMGetDS(dm, &prob));
12029566063dSJacob Faibussowitsch   PetscCall(PetscDSGetNumBoundary(prob, &numBd));
12039566063dSJacob Faibussowitsch   PetscCall(PetscObjectQuery((PetscObject)locX, "__Vec_bc_zero__", &isZero));
120456cf3b9cSMatthew G. Knepley   for (b = 0; b < numBd; ++b) {
120545480ffeSMatthew G. Knepley     PetscWeakForm           wf;
120656cf3b9cSMatthew G. Knepley     DMBoundaryConditionType type;
120745480ffeSMatthew G. Knepley     const char             *name;
120856cf3b9cSMatthew G. Knepley     DMLabel                 label;
120956cf3b9cSMatthew G. Knepley     PetscInt                field, Nc;
121056cf3b9cSMatthew G. Knepley     const PetscInt         *comps;
121156cf3b9cSMatthew G. Knepley     PetscObject             obj;
121256cf3b9cSMatthew G. Knepley     PetscClassId            id;
121356cf3b9cSMatthew G. Knepley     PetscInt                numids;
121456cf3b9cSMatthew G. Knepley     const PetscInt         *ids;
121545480ffeSMatthew G. Knepley     void (*bvfunc)(void);
121656cf3b9cSMatthew G. Knepley     void *ctx;
121756cf3b9cSMatthew G. Knepley 
12189566063dSJacob Faibussowitsch     PetscCall(PetscDSGetBoundary(prob, b, &wf, &type, &name, &label, &numids, &ids, &field, &Nc, &comps, NULL, &bvfunc, &ctx));
121956cf3b9cSMatthew G. Knepley     if (insertEssential != (type & DM_BC_ESSENTIAL)) continue;
12209566063dSJacob Faibussowitsch     PetscCall(DMGetField(dm, field, NULL, &obj));
12219566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetClassId(obj, &id));
122256cf3b9cSMatthew G. Knepley     if (id == PETSCFE_CLASSID) {
122356cf3b9cSMatthew G. Knepley       switch (type) {
122456cf3b9cSMatthew G. Knepley         /* for FEM, there is no insertion to be done for non-essential boundary conditions */
12259371c9d4SSatish Balay       case DM_BC_ESSENTIAL: {
12268434afd1SBarry Smith         PetscSimplePointFn *func_t = (PetscSimplePointFn *)bvfunc;
122745480ffeSMatthew G. Knepley 
122845480ffeSMatthew G. Knepley         if (isZero) func_t = zero;
12299566063dSJacob Faibussowitsch         PetscCall(DMPlexLabelAddCells(dm, label));
12309566063dSJacob Faibussowitsch         PetscCall(DMPlexInsertBoundaryValuesEssential(dm, time, field, Nc, comps, label, numids, ids, func_t, ctx, locX));
12319566063dSJacob Faibussowitsch         PetscCall(DMPlexLabelClearCells(dm, label));
12329371c9d4SSatish Balay       } break;
12339371c9d4SSatish Balay       case DM_BC_ESSENTIAL_FIELD: {
123445480ffeSMatthew G. Knepley         PetscPointFunc func_t = (PetscPointFunc)bvfunc;
123545480ffeSMatthew G. Knepley 
12369566063dSJacob Faibussowitsch         PetscCall(DMPlexLabelAddCells(dm, label));
12379566063dSJacob Faibussowitsch         PetscCall(DMPlexInsertBoundaryValuesEssentialField(dm, time, locX, field, Nc, comps, label, numids, ids, func_t, ctx, locX));
12389566063dSJacob Faibussowitsch         PetscCall(DMPlexLabelClearCells(dm, label));
12399371c9d4SSatish Balay       } break;
1240d71ae5a4SJacob Faibussowitsch       default:
1241d71ae5a4SJacob Faibussowitsch         break;
124256cf3b9cSMatthew G. Knepley       }
124363a3b9bcSJacob Faibussowitsch     } else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, field);
124456cf3b9cSMatthew G. Knepley   }
12453ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
124656cf3b9cSMatthew G. Knepley }
124756cf3b9cSMatthew G. Knepley 
1248f1d73a7aSMatthew G. Knepley /*@
1249f1d73a7aSMatthew G. Knepley   DMPlexInsertBoundaryValues - Puts coefficients which represent boundary values into the local solution vector
1250f1d73a7aSMatthew G. Knepley 
1251ed808b8fSJed Brown   Not Collective
1252ed808b8fSJed Brown 
1253f1d73a7aSMatthew G. Knepley   Input Parameters:
1254a1cb98faSBarry Smith + dm              - The `DM`
1255f1d73a7aSMatthew G. Knepley . insertEssential - Should I insert essential (e.g. Dirichlet) or inessential (e.g. Neumann) boundary conditions
1256f1d73a7aSMatthew G. Knepley . time            - The time
1257f1d73a7aSMatthew G. Knepley . faceGeomFVM     - Face geometry data for FV discretizations
1258f1d73a7aSMatthew G. Knepley . cellGeomFVM     - Cell geometry data for FV discretizations
1259f1d73a7aSMatthew G. Knepley - gradFVM         - Gradient reconstruction data for FV discretizations
1260f1d73a7aSMatthew G. Knepley 
12612fe279fdSBarry Smith   Output Parameter:
1262f1d73a7aSMatthew G. Knepley . locX - Solution updated with boundary values
1263f1d73a7aSMatthew G. Knepley 
1264ed808b8fSJed Brown   Level: intermediate
1265f1d73a7aSMatthew G. Knepley 
12661cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMProjectFunctionLabelLocal()`, `DMAddBoundary()`
1267f1d73a7aSMatthew G. Knepley @*/
1268d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexInsertBoundaryValues(DM dm, PetscBool insertEssential, Vec locX, PetscReal time, Vec faceGeomFVM, Vec cellGeomFVM, Vec gradFVM)
1269d71ae5a4SJacob Faibussowitsch {
1270f1d73a7aSMatthew G. Knepley   PetscFunctionBegin;
1271f1d73a7aSMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
1272064a246eSJacob Faibussowitsch   PetscValidHeaderSpecific(locX, VEC_CLASSID, 3);
1273ad540459SPierre Jolivet   if (faceGeomFVM) PetscValidHeaderSpecific(faceGeomFVM, VEC_CLASSID, 5);
1274ad540459SPierre Jolivet   if (cellGeomFVM) PetscValidHeaderSpecific(cellGeomFVM, VEC_CLASSID, 6);
1275ad540459SPierre Jolivet   if (gradFVM) PetscValidHeaderSpecific(gradFVM, VEC_CLASSID, 7);
1276cac4c232SBarry Smith   PetscTryMethod(dm, "DMPlexInsertBoundaryValues_C", (DM, PetscBool, Vec, PetscReal, Vec, Vec, Vec), (dm, insertEssential, locX, time, faceGeomFVM, cellGeomFVM, gradFVM));
12773ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1278f1d73a7aSMatthew G. Knepley }
1279f1d73a7aSMatthew G. Knepley 
128056cf3b9cSMatthew G. Knepley /*@
1281a5b23f4aSJose E. Roman   DMPlexInsertTimeDerivativeBoundaryValues - Puts coefficients which represent boundary values of the time derivative into the local solution vector
128256cf3b9cSMatthew G. Knepley 
128356cf3b9cSMatthew G. Knepley   Input Parameters:
1284a1cb98faSBarry Smith + dm              - The `DM`
128556cf3b9cSMatthew G. Knepley . insertEssential - Should I insert essential (e.g. Dirichlet) or inessential (e.g. Neumann) boundary conditions
128656cf3b9cSMatthew G. Knepley . time            - The time
128756cf3b9cSMatthew G. Knepley . faceGeomFVM     - Face geometry data for FV discretizations
128856cf3b9cSMatthew G. Knepley . cellGeomFVM     - Cell geometry data for FV discretizations
128956cf3b9cSMatthew G. Knepley - gradFVM         - Gradient reconstruction data for FV discretizations
129056cf3b9cSMatthew G. Knepley 
12912fe279fdSBarry Smith   Output Parameter:
129256cf3b9cSMatthew G. Knepley . locX_t - Solution updated with boundary values
129356cf3b9cSMatthew G. Knepley 
129456cf3b9cSMatthew G. Knepley   Level: developer
129556cf3b9cSMatthew G. Knepley 
12961cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMProjectFunctionLabelLocal()`
129756cf3b9cSMatthew G. Knepley @*/
1298d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexInsertTimeDerivativeBoundaryValues(DM dm, PetscBool insertEssential, Vec locX_t, PetscReal time, Vec faceGeomFVM, Vec cellGeomFVM, Vec gradFVM)
1299d71ae5a4SJacob Faibussowitsch {
130056cf3b9cSMatthew G. Knepley   PetscFunctionBegin;
130156cf3b9cSMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
1302ad540459SPierre Jolivet   if (locX_t) PetscValidHeaderSpecific(locX_t, VEC_CLASSID, 3);
1303ad540459SPierre Jolivet   if (faceGeomFVM) PetscValidHeaderSpecific(faceGeomFVM, VEC_CLASSID, 5);
1304ad540459SPierre Jolivet   if (cellGeomFVM) PetscValidHeaderSpecific(cellGeomFVM, VEC_CLASSID, 6);
1305ad540459SPierre Jolivet   if (gradFVM) PetscValidHeaderSpecific(gradFVM, VEC_CLASSID, 7);
13066c51210dSStefano Zampini   PetscTryMethod(dm, "DMPlexInsertTimeDerivativeBoundaryValues_C", (DM, PetscBool, Vec, PetscReal, Vec, Vec, Vec), (dm, insertEssential, locX_t, time, faceGeomFVM, cellGeomFVM, gradFVM));
13073ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
130856cf3b9cSMatthew G. Knepley }
130956cf3b9cSMatthew G. Knepley 
13105962854dSMatthew G. Knepley // Handle non-essential (e.g. outflow) boundary values
13115962854dSMatthew G. Knepley PetscErrorCode DMPlexInsertBoundaryValuesFVM(DM dm, PetscFV fv, Vec locX, PetscReal time, Vec *locGradient)
13125962854dSMatthew G. Knepley {
13135962854dSMatthew G. Knepley   DM  dmGrad;
13145962854dSMatthew G. Knepley   Vec cellGeometryFVM, faceGeometryFVM, locGrad = NULL;
13155962854dSMatthew G. Knepley 
13165962854dSMatthew G. Knepley   PetscFunctionBegin;
13175962854dSMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
13185962854dSMatthew G. Knepley   PetscValidHeaderSpecific(fv, PETSCFV_CLASSID, 2);
13195962854dSMatthew G. Knepley   PetscValidHeaderSpecific(locX, VEC_CLASSID, 3);
13205962854dSMatthew G. Knepley   if (locGradient) {
13215962854dSMatthew G. Knepley     PetscAssertPointer(locGradient, 5);
13225962854dSMatthew G. Knepley     *locGradient = NULL;
13235962854dSMatthew G. Knepley   }
13245962854dSMatthew G. Knepley   PetscCall(DMPlexGetGeometryFVM(dm, &faceGeometryFVM, &cellGeometryFVM, NULL));
13255962854dSMatthew G. Knepley   /* Reconstruct and limit cell gradients */
13265962854dSMatthew G. Knepley   PetscCall(DMPlexGetGradientDM(dm, fv, &dmGrad));
13275962854dSMatthew G. Knepley   if (dmGrad) {
13285962854dSMatthew G. Knepley     Vec      grad;
13295962854dSMatthew G. Knepley     PetscInt fStart, fEnd;
13305962854dSMatthew G. Knepley 
13315962854dSMatthew G. Knepley     PetscCall(DMPlexGetHeightStratum(dm, 1, &fStart, &fEnd));
13325962854dSMatthew G. Knepley     PetscCall(DMGetGlobalVector(dmGrad, &grad));
13335962854dSMatthew G. Knepley     PetscCall(DMPlexReconstructGradients_Internal(dm, fv, fStart, fEnd, faceGeometryFVM, cellGeometryFVM, locX, grad));
13345962854dSMatthew G. Knepley     /* Communicate gradient values */
13355962854dSMatthew G. Knepley     PetscCall(DMGetLocalVector(dmGrad, &locGrad));
13365962854dSMatthew G. Knepley     PetscCall(DMGlobalToLocalBegin(dmGrad, grad, INSERT_VALUES, locGrad));
13375962854dSMatthew G. Knepley     PetscCall(DMGlobalToLocalEnd(dmGrad, grad, INSERT_VALUES, locGrad));
13385962854dSMatthew G. Knepley     PetscCall(DMRestoreGlobalVector(dmGrad, &grad));
13395962854dSMatthew G. Knepley   }
13405962854dSMatthew G. Knepley   PetscCall(DMPlexInsertBoundaryValues(dm, PETSC_FALSE, locX, time, faceGeometryFVM, cellGeometryFVM, locGrad));
13415962854dSMatthew G. Knepley   if (locGradient) *locGradient = locGrad;
13425962854dSMatthew G. Knepley   else if (locGrad) PetscCall(DMRestoreLocalVector(dmGrad, &locGrad));
13435962854dSMatthew G. Knepley   PetscFunctionReturn(PETSC_SUCCESS);
13445962854dSMatthew G. Knepley }
13455962854dSMatthew G. Knepley 
1346d71ae5a4SJacob Faibussowitsch PetscErrorCode DMComputeL2Diff_Plex(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal[], PetscInt, PetscScalar *, void *), void **ctxs, Vec X, PetscReal *diff)
1347d71ae5a4SJacob Faibussowitsch {
1348574a98acSMatthew G. Knepley   Vec localX;
1349574a98acSMatthew G. Knepley 
1350574a98acSMatthew G. Knepley   PetscFunctionBegin;
13519566063dSJacob Faibussowitsch   PetscCall(DMGetLocalVector(dm, &localX));
13529566063dSJacob Faibussowitsch   PetscCall(DMPlexInsertBoundaryValues(dm, PETSC_TRUE, localX, time, NULL, NULL, NULL));
13539566063dSJacob Faibussowitsch   PetscCall(DMGlobalToLocalBegin(dm, X, INSERT_VALUES, localX));
13549566063dSJacob Faibussowitsch   PetscCall(DMGlobalToLocalEnd(dm, X, INSERT_VALUES, localX));
13559566063dSJacob Faibussowitsch   PetscCall(DMPlexComputeL2DiffLocal(dm, time, funcs, ctxs, localX, diff));
13569566063dSJacob Faibussowitsch   PetscCall(DMRestoreLocalVector(dm, &localX));
13573ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1358574a98acSMatthew G. Knepley }
1359574a98acSMatthew G. Knepley 
1360574a98acSMatthew G. Knepley /*@C
136160225df5SJacob Faibussowitsch   DMPlexComputeL2DiffLocal - This function computes the L_2 difference between a function u and an FEM interpolant solution u_h.
1362574a98acSMatthew G. Knepley 
136320f4b53cSBarry Smith   Collective
1364c0f8e1fdSMatthew G. Knepley 
1365574a98acSMatthew G. Knepley   Input Parameters:
1366a1cb98faSBarry Smith + dm     - The `DM`
1367574a98acSMatthew G. Knepley . time   - The time
1368574a98acSMatthew G. Knepley . funcs  - The functions to evaluate for each field component
136920f4b53cSBarry Smith . ctxs   - Optional array of contexts to pass to each function, or `NULL`.
1370574a98acSMatthew G. Knepley - localX - The coefficient vector u_h, a local vector
1371574a98acSMatthew G. Knepley 
1372574a98acSMatthew G. Knepley   Output Parameter:
1373574a98acSMatthew G. Knepley . diff - The diff ||u - u_h||_2
1374574a98acSMatthew G. Knepley 
1375574a98acSMatthew G. Knepley   Level: developer
1376574a98acSMatthew G. Knepley 
13771cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMProjectFunction()`, `DMComputeL2FieldDiff()`, `DMComputeL2GradientDiff()`
1378574a98acSMatthew G. Knepley @*/
1379d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeL2DiffLocal(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal[], PetscInt, PetscScalar *, void *), void **ctxs, Vec localX, PetscReal *diff)
1380d71ae5a4SJacob Faibussowitsch {
13810f09c10fSMatthew G. Knepley   const PetscInt   debug = ((DM_Plex *)dm->data)->printL2;
1382ca3d3a14SMatthew G. Knepley   DM               tdm;
1383ca3d3a14SMatthew G. Knepley   Vec              tv;
1384cb1e1211SMatthew G Knepley   PetscSection     section;
1385c5bbbd5bSMatthew G. Knepley   PetscQuadrature  quad;
13864bee2e38SMatthew G. Knepley   PetscFEGeom      fegeom;
138715496722SMatthew G. Knepley   PetscScalar     *funcVal, *interpolant;
13884bee2e38SMatthew G. Knepley   PetscReal       *coords, *gcoords;
1389cb1e1211SMatthew G Knepley   PetscReal        localDiff = 0.0;
13907318780aSToby Isaac   const PetscReal *quadWeights;
1391412e9a14SMatthew G. Knepley   PetscInt         dim, coordDim, numFields, numComponents = 0, qNc, Nq, cellHeight, cStart, cEnd, c, field, fieldOffset;
1392ca3d3a14SMatthew G. Knepley   PetscBool        transform;
1393cb1e1211SMatthew G Knepley 
1394cb1e1211SMatthew G Knepley   PetscFunctionBegin;
13959566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dm, &dim));
13969566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateDim(dm, &coordDim));
13972a4e142eSMatthew G. Knepley   fegeom.dimEmbed = coordDim;
13989566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dm, &section));
13999566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetNumFields(section, &numFields));
14009566063dSJacob Faibussowitsch   PetscCall(DMGetBasisTransformDM_Internal(dm, &tdm));
14019566063dSJacob Faibussowitsch   PetscCall(DMGetBasisTransformVec_Internal(dm, &tv));
14029566063dSJacob Faibussowitsch   PetscCall(DMHasBasisTransform(dm, &transform));
1403eae3dc7dSJacob Faibussowitsch   PetscCheck(numFields, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of fields is zero!");
1404cb1e1211SMatthew G Knepley   for (field = 0; field < numFields; ++field) {
140515496722SMatthew G. Knepley     PetscObject  obj;
140615496722SMatthew G. Knepley     PetscClassId id;
1407c5bbbd5bSMatthew G. Knepley     PetscInt     Nc;
1408c5bbbd5bSMatthew G. Knepley 
14099566063dSJacob Faibussowitsch     PetscCall(DMGetField(dm, field, NULL, &obj));
14109566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetClassId(obj, &id));
141115496722SMatthew G. Knepley     if (id == PETSCFE_CLASSID) {
141215496722SMatthew G. Knepley       PetscFE fe = (PetscFE)obj;
141315496722SMatthew G. Knepley 
14149566063dSJacob Faibussowitsch       PetscCall(PetscFEGetQuadrature(fe, &quad));
14159566063dSJacob Faibussowitsch       PetscCall(PetscFEGetNumComponents(fe, &Nc));
141615496722SMatthew G. Knepley     } else if (id == PETSCFV_CLASSID) {
141715496722SMatthew G. Knepley       PetscFV fv = (PetscFV)obj;
141815496722SMatthew G. Knepley 
14199566063dSJacob Faibussowitsch       PetscCall(PetscFVGetQuadrature(fv, &quad));
14209566063dSJacob Faibussowitsch       PetscCall(PetscFVGetNumComponents(fv, &Nc));
142163a3b9bcSJacob Faibussowitsch     } else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, field);
1422c5bbbd5bSMatthew G. Knepley     numComponents += Nc;
1423cb1e1211SMatthew G Knepley   }
14249566063dSJacob Faibussowitsch   PetscCall(PetscQuadratureGetData(quad, NULL, &qNc, &Nq, NULL, &quadWeights));
142563a3b9bcSJacob Faibussowitsch   PetscCheck(!(qNc != 1) || !(qNc != numComponents), PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_SIZ, "Quadrature components %" PetscInt_FMT " != %" PetscInt_FMT " field components", qNc, numComponents);
1426c9cb6370SYANG Zongze   PetscCall(PetscMalloc6(numComponents, &funcVal, numComponents, &interpolant, coordDim * (Nq + 1), &coords, Nq, &fegeom.detJ, coordDim * coordDim * Nq, &fegeom.J, coordDim * coordDim * Nq, &fegeom.invJ));
14279566063dSJacob Faibussowitsch   PetscCall(DMPlexGetVTKCellHeight(dm, &cellHeight));
14289566063dSJacob Faibussowitsch   PetscCall(DMPlexGetSimplexOrBoxCells(dm, cellHeight, &cStart, &cEnd));
1429cb1e1211SMatthew G Knepley   for (c = cStart; c < cEnd; ++c) {
1430a1e44745SMatthew G. Knepley     PetscScalar *x        = NULL;
1431cb1e1211SMatthew G Knepley     PetscReal    elemDiff = 0.0;
14329c3cf19fSMatthew G. Knepley     PetscInt     qc       = 0;
1433cb1e1211SMatthew G Knepley 
14349566063dSJacob Faibussowitsch     PetscCall(DMPlexComputeCellGeometryFEM(dm, c, quad, coords, fegeom.J, fegeom.invJ, fegeom.detJ));
1435e8e188d2SZach Atkins     PetscCall(DMPlexVecGetOrientedClosure_Internal(dm, NULL, PETSC_FALSE, localX, c, 0, NULL, &x));
1436cb1e1211SMatthew G Knepley 
143715496722SMatthew G. Knepley     for (field = 0, fieldOffset = 0; field < numFields; ++field) {
143815496722SMatthew G. Knepley       PetscObject  obj;
143915496722SMatthew G. Knepley       PetscClassId id;
1440c110b1eeSGeoffrey Irving       void *const  ctx = ctxs ? ctxs[field] : NULL;
144115496722SMatthew G. Knepley       PetscInt     Nb, Nc, q, fc;
1442cb1e1211SMatthew G Knepley 
14439566063dSJacob Faibussowitsch       PetscCall(DMGetField(dm, field, NULL, &obj));
14449566063dSJacob Faibussowitsch       PetscCall(PetscObjectGetClassId(obj, &id));
14459371c9d4SSatish Balay       if (id == PETSCFE_CLASSID) {
14469371c9d4SSatish Balay         PetscCall(PetscFEGetNumComponents((PetscFE)obj, &Nc));
14479371c9d4SSatish Balay         PetscCall(PetscFEGetDimension((PetscFE)obj, &Nb));
14489371c9d4SSatish Balay       } else if (id == PETSCFV_CLASSID) {
14499371c9d4SSatish Balay         PetscCall(PetscFVGetNumComponents((PetscFV)obj, &Nc));
14509371c9d4SSatish Balay         Nb = 1;
14519371c9d4SSatish Balay       } else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, field);
1452cb1e1211SMatthew G Knepley       if (debug) {
1453cb1e1211SMatthew G Knepley         char title[1024];
145463a3b9bcSJacob Faibussowitsch         PetscCall(PetscSNPrintf(title, 1023, "Solution for Field %" PetscInt_FMT, field));
14559566063dSJacob Faibussowitsch         PetscCall(DMPrintCellVector(c, title, Nb, &x[fieldOffset]));
1456cb1e1211SMatthew G Knepley       }
14577318780aSToby Isaac       for (q = 0; q < Nq; ++q) {
14582a4e142eSMatthew G. Knepley         PetscFEGeom    qgeom;
1459d0609cedSBarry Smith         PetscErrorCode ierr;
14602a4e142eSMatthew G. Knepley 
14612a4e142eSMatthew G. Knepley         qgeom.dimEmbed = fegeom.dimEmbed;
14622a4e142eSMatthew G. Knepley         qgeom.J        = &fegeom.J[q * coordDim * coordDim];
14632a4e142eSMatthew G. Knepley         qgeom.invJ     = &fegeom.invJ[q * coordDim * coordDim];
14642a4e142eSMatthew G. Knepley         qgeom.detJ     = &fegeom.detJ[q];
146563a3b9bcSJacob Faibussowitsch         PetscCheck(fegeom.detJ[q] > 0.0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Invalid determinant %g for element %" PetscInt_FMT ", point %" PetscInt_FMT, (double)fegeom.detJ[q], c, q);
1466d3a7d86cSMatthew G. Knepley         if (transform) {
1467d3a7d86cSMatthew G. Knepley           gcoords = &coords[coordDim * Nq];
14689566063dSJacob Faibussowitsch           PetscCall(DMPlexBasisTransformApplyReal_Internal(dm, &coords[coordDim * q], PETSC_TRUE, coordDim, &coords[coordDim * q], gcoords, dm->transformCtx));
1469d3a7d86cSMatthew G. Knepley         } else {
1470d3a7d86cSMatthew G. Knepley           gcoords = &coords[coordDim * q];
1471d3a7d86cSMatthew G. Knepley         }
14729566063dSJacob Faibussowitsch         PetscCall(PetscArrayzero(funcVal, Nc));
1473ca3d3a14SMatthew G. Knepley         ierr = (*funcs[field])(coordDim, time, gcoords, Nc, funcVal, ctx);
1474e735a8a9SMatthew G. Knepley         if (ierr) {
14759566063dSJacob Faibussowitsch           PetscCall(DMPlexVecRestoreClosure(dm, NULL, localX, c, NULL, &x));
14769566063dSJacob Faibussowitsch           PetscCall(DMRestoreLocalVector(dm, &localX));
14779566063dSJacob Faibussowitsch           PetscCall(PetscFree6(funcVal, interpolant, coords, fegeom.detJ, fegeom.J, fegeom.invJ));
1478e735a8a9SMatthew G. Knepley         }
14799566063dSJacob Faibussowitsch         if (transform) PetscCall(DMPlexBasisTransformApply_Internal(dm, &coords[coordDim * q], PETSC_FALSE, Nc, funcVal, funcVal, dm->transformCtx));
14809566063dSJacob Faibussowitsch         if (id == PETSCFE_CLASSID) PetscCall(PetscFEInterpolate_Static((PetscFE)obj, &x[fieldOffset], &qgeom, q, interpolant));
14819566063dSJacob Faibussowitsch         else if (id == PETSCFV_CLASSID) PetscCall(PetscFVInterpolate_Static((PetscFV)obj, &x[fieldOffset], q, interpolant));
14822df84da0SMatthew G. Knepley         else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, field);
148315496722SMatthew G. Knepley         for (fc = 0; fc < Nc; ++fc) {
1484beaa55a6SMatthew G. Knepley           const PetscReal wt = quadWeights[q * qNc + (qNc == 1 ? 0 : qc + fc)];
14859371c9d4SSatish Balay           if (debug)
1486835f2295SStefano Zampini             PetscCall(PetscPrintf(PETSC_COMM_SELF, "    elem %" PetscInt_FMT " field %" PetscInt_FMT ",%" PetscInt_FMT " point %g %g %g diff %g (%g, %g)\n", c, field, fc, (double)(coordDim > 0 ? coords[coordDim * q] : 0), (double)(coordDim > 1 ? coords[coordDim * q + 1] : 0), (double)(coordDim > 2 ? coords[coordDim * q + 2] : 0),
14879371c9d4SSatish Balay                                   (double)(PetscSqr(PetscRealPart(interpolant[fc] - funcVal[fc])) * wt * fegeom.detJ[q]), (double)PetscRealPart(interpolant[fc]), (double)PetscRealPart(funcVal[fc])));
14884bee2e38SMatthew G. Knepley           elemDiff += PetscSqr(PetscRealPart(interpolant[fc] - funcVal[fc])) * wt * fegeom.detJ[q];
1489cb1e1211SMatthew G Knepley         }
1490cb1e1211SMatthew G Knepley       }
14919c3cf19fSMatthew G. Knepley       fieldOffset += Nb;
1492beaa55a6SMatthew G. Knepley       qc += Nc;
1493cb1e1211SMatthew G Knepley     }
14949566063dSJacob Faibussowitsch     PetscCall(DMPlexVecRestoreClosure(dm, NULL, localX, c, NULL, &x));
14959566063dSJacob Faibussowitsch     if (debug) PetscCall(PetscPrintf(PETSC_COMM_SELF, "  elem %" PetscInt_FMT " diff %g\n", c, (double)elemDiff));
1496cb1e1211SMatthew G Knepley     localDiff += elemDiff;
1497cb1e1211SMatthew G Knepley   }
14989566063dSJacob Faibussowitsch   PetscCall(PetscFree6(funcVal, interpolant, coords, fegeom.detJ, fegeom.J, fegeom.invJ));
1499462c564dSBarry Smith   PetscCallMPI(MPIU_Allreduce(&localDiff, diff, 1, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)dm)));
1500cb1e1211SMatthew G Knepley   *diff = PetscSqrtReal(*diff);
15013ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1502cb1e1211SMatthew G Knepley }
1503cb1e1211SMatthew G Knepley 
1504d71ae5a4SJacob Faibussowitsch PetscErrorCode DMComputeL2GradientDiff_Plex(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal[], const PetscReal[], PetscInt, PetscScalar *, void *), void **ctxs, Vec X, const PetscReal n[], PetscReal *diff)
1505d71ae5a4SJacob Faibussowitsch {
15060f09c10fSMatthew G. Knepley   const PetscInt   debug = ((DM_Plex *)dm->data)->printL2;
1507ca3d3a14SMatthew G. Knepley   DM               tdm;
1508cb1e1211SMatthew G Knepley   PetscSection     section;
150940e14135SMatthew G. Knepley   PetscQuadrature  quad;
1510ca3d3a14SMatthew G. Knepley   Vec              localX, tv;
15119c3cf19fSMatthew G. Knepley   PetscScalar     *funcVal, *interpolant;
15122a4e142eSMatthew G. Knepley   const PetscReal *quadWeights;
15134bee2e38SMatthew G. Knepley   PetscFEGeom      fegeom;
15144bee2e38SMatthew G. Knepley   PetscReal       *coords, *gcoords;
151540e14135SMatthew G. Knepley   PetscReal        localDiff = 0.0;
1516485ad865SMatthew G. Knepley   PetscInt         dim, coordDim, qNc = 0, Nq = 0, numFields, numComponents = 0, cStart, cEnd, c, field, fieldOffset;
1517ca3d3a14SMatthew G. Knepley   PetscBool        transform;
1518cb1e1211SMatthew G Knepley 
1519cb1e1211SMatthew G Knepley   PetscFunctionBegin;
15209566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dm, &dim));
15219566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateDim(dm, &coordDim));
15224bee2e38SMatthew G. Knepley   fegeom.dimEmbed = coordDim;
15239566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dm, &section));
15249566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetNumFields(section, &numFields));
15259566063dSJacob Faibussowitsch   PetscCall(DMGetLocalVector(dm, &localX));
15269566063dSJacob Faibussowitsch   PetscCall(DMGlobalToLocalBegin(dm, X, INSERT_VALUES, localX));
15279566063dSJacob Faibussowitsch   PetscCall(DMGlobalToLocalEnd(dm, X, INSERT_VALUES, localX));
15289566063dSJacob Faibussowitsch   PetscCall(DMGetBasisTransformDM_Internal(dm, &tdm));
15299566063dSJacob Faibussowitsch   PetscCall(DMGetBasisTransformVec_Internal(dm, &tv));
15309566063dSJacob Faibussowitsch   PetscCall(DMHasBasisTransform(dm, &transform));
1531652b88e8SMatthew G. Knepley   for (field = 0; field < numFields; ++field) {
15320f2d7e86SMatthew G. Knepley     PetscFE  fe;
153340e14135SMatthew G. Knepley     PetscInt Nc;
1534652b88e8SMatthew G. Knepley 
15359566063dSJacob Faibussowitsch     PetscCall(DMGetField(dm, field, NULL, (PetscObject *)&fe));
15369566063dSJacob Faibussowitsch     PetscCall(PetscFEGetQuadrature(fe, &quad));
15379566063dSJacob Faibussowitsch     PetscCall(PetscFEGetNumComponents(fe, &Nc));
153840e14135SMatthew G. Knepley     numComponents += Nc;
1539652b88e8SMatthew G. Knepley   }
15409566063dSJacob Faibussowitsch   PetscCall(PetscQuadratureGetData(quad, NULL, &qNc, &Nq, NULL, &quadWeights));
154163a3b9bcSJacob Faibussowitsch   PetscCheck(!(qNc != 1) || !(qNc != numComponents), PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_SIZ, "Quadrature components %" PetscInt_FMT " != %" PetscInt_FMT " field components", qNc, numComponents);
15429566063dSJacob Faibussowitsch   /* PetscCall(DMProjectFunctionLocal(dm, fe, funcs, INSERT_BC_VALUES, localX)); */
1543c9cb6370SYANG Zongze   PetscCall(PetscMalloc6(numComponents, &funcVal, coordDim * (Nq + 1), &coords, coordDim * coordDim * Nq, &fegeom.J, coordDim * coordDim * Nq, &fegeom.invJ, numComponents * coordDim, &interpolant, Nq, &fegeom.detJ));
15449566063dSJacob Faibussowitsch   PetscCall(DMPlexGetSimplexOrBoxCells(dm, 0, &cStart, &cEnd));
154540e14135SMatthew G. Knepley   for (c = cStart; c < cEnd; ++c) {
154640e14135SMatthew G. Knepley     PetscScalar *x        = NULL;
154740e14135SMatthew G. Knepley     PetscReal    elemDiff = 0.0;
15489c3cf19fSMatthew G. Knepley     PetscInt     qc       = 0;
1549652b88e8SMatthew G. Knepley 
15509566063dSJacob Faibussowitsch     PetscCall(DMPlexComputeCellGeometryFEM(dm, c, quad, coords, fegeom.J, fegeom.invJ, fegeom.detJ));
1551e8e188d2SZach Atkins     PetscCall(DMPlexVecGetOrientedClosure_Internal(dm, NULL, PETSC_FALSE, localX, c, 0, NULL, &x));
155240e14135SMatthew G. Knepley 
15539c3cf19fSMatthew G. Knepley     for (field = 0, fieldOffset = 0; field < numFields; ++field) {
15540f2d7e86SMatthew G. Knepley       PetscFE     fe;
155551259fa3SMatthew G. Knepley       void *const ctx = ctxs ? ctxs[field] : NULL;
15569c3cf19fSMatthew G. Knepley       PetscInt    Nb, Nc, q, fc;
155740e14135SMatthew G. Knepley 
15589566063dSJacob Faibussowitsch       PetscCall(DMGetField(dm, field, NULL, (PetscObject *)&fe));
15599566063dSJacob Faibussowitsch       PetscCall(PetscFEGetDimension(fe, &Nb));
15609566063dSJacob Faibussowitsch       PetscCall(PetscFEGetNumComponents(fe, &Nc));
156140e14135SMatthew G. Knepley       if (debug) {
156240e14135SMatthew G. Knepley         char title[1024];
15639566063dSJacob Faibussowitsch         PetscCall(PetscSNPrintf(title, 1023, "Solution for Field %" PetscInt_FMT, field));
15649566063dSJacob Faibussowitsch         PetscCall(DMPrintCellVector(c, title, Nb, &x[fieldOffset]));
1565652b88e8SMatthew G. Knepley       }
15669c3cf19fSMatthew G. Knepley       for (q = 0; q < Nq; ++q) {
15672a4e142eSMatthew G. Knepley         PetscFEGeom    qgeom;
1568d0609cedSBarry Smith         PetscErrorCode ierr;
15692a4e142eSMatthew G. Knepley 
15702a4e142eSMatthew G. Knepley         qgeom.dimEmbed = fegeom.dimEmbed;
15712a4e142eSMatthew G. Knepley         qgeom.J        = &fegeom.J[q * coordDim * coordDim];
15722a4e142eSMatthew G. Knepley         qgeom.invJ     = &fegeom.invJ[q * coordDim * coordDim];
15732a4e142eSMatthew G. Knepley         qgeom.detJ     = &fegeom.detJ[q];
15742df84da0SMatthew G. Knepley         PetscCheck(fegeom.detJ[q] > 0.0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Invalid determinant %g for element %" PetscInt_FMT ", quadrature points %" PetscInt_FMT, (double)fegeom.detJ[q], c, q);
1575d3a7d86cSMatthew G. Knepley         if (transform) {
1576d3a7d86cSMatthew G. Knepley           gcoords = &coords[coordDim * Nq];
15779566063dSJacob Faibussowitsch           PetscCall(DMPlexBasisTransformApplyReal_Internal(dm, &coords[coordDim * q], PETSC_TRUE, coordDim, &coords[coordDim * q], gcoords, dm->transformCtx));
1578d3a7d86cSMatthew G. Knepley         } else {
1579d3a7d86cSMatthew G. Knepley           gcoords = &coords[coordDim * q];
1580d3a7d86cSMatthew G. Knepley         }
15819566063dSJacob Faibussowitsch         PetscCall(PetscArrayzero(funcVal, Nc));
15824bee2e38SMatthew G. Knepley         ierr = (*funcs[field])(coordDim, time, gcoords, n, Nc, funcVal, ctx);
1583e735a8a9SMatthew G. Knepley         if (ierr) {
15849566063dSJacob Faibussowitsch           PetscCall(DMPlexVecRestoreClosure(dm, NULL, localX, c, NULL, &x));
15859566063dSJacob Faibussowitsch           PetscCall(DMRestoreLocalVector(dm, &localX));
15869566063dSJacob Faibussowitsch           PetscCall(PetscFree6(funcVal, coords, fegeom.J, fegeom.invJ, interpolant, fegeom.detJ));
1587e735a8a9SMatthew G. Knepley         }
15889566063dSJacob Faibussowitsch         if (transform) PetscCall(DMPlexBasisTransformApply_Internal(dm, &coords[coordDim * q], PETSC_FALSE, Nc, funcVal, funcVal, dm->transformCtx));
15899566063dSJacob Faibussowitsch         PetscCall(PetscFEInterpolateGradient_Static(fe, 1, &x[fieldOffset], &qgeom, q, interpolant));
15904bee2e38SMatthew G. Knepley         /* Overwrite with the dot product if the normal is given */
15914bee2e38SMatthew G. Knepley         if (n) {
15924bee2e38SMatthew G. Knepley           for (fc = 0; fc < Nc; ++fc) {
15934bee2e38SMatthew G. Knepley             PetscScalar sum = 0.0;
15944bee2e38SMatthew G. Knepley             PetscInt    d;
15954bee2e38SMatthew G. Knepley             for (d = 0; d < dim; ++d) sum += interpolant[fc * dim + d] * n[d];
15964bee2e38SMatthew G. Knepley             interpolant[fc] = sum;
15974bee2e38SMatthew G. Knepley           }
15984bee2e38SMatthew G. Knepley         }
15999c3cf19fSMatthew G. Knepley         for (fc = 0; fc < Nc; ++fc) {
1600beaa55a6SMatthew G. Knepley           const PetscReal wt = quadWeights[q * qNc + (qNc == 1 ? 0 : qc + fc)];
160163a3b9bcSJacob Faibussowitsch           if (debug) PetscCall(PetscPrintf(PETSC_COMM_SELF, "    elem %" PetscInt_FMT " fieldDer %" PetscInt_FMT ",%" PetscInt_FMT " diff %g\n", c, field, fc, (double)(PetscSqr(PetscRealPart(interpolant[fc] - funcVal[fc])) * wt * fegeom.detJ[q])));
16024bee2e38SMatthew G. Knepley           elemDiff += PetscSqr(PetscRealPart(interpolant[fc] - funcVal[fc])) * wt * fegeom.detJ[q];
160340e14135SMatthew G. Knepley         }
160440e14135SMatthew G. Knepley       }
16059c3cf19fSMatthew G. Knepley       fieldOffset += Nb;
16069c3cf19fSMatthew G. Knepley       qc += Nc;
160740e14135SMatthew G. Knepley     }
16089566063dSJacob Faibussowitsch     PetscCall(DMPlexVecRestoreClosure(dm, NULL, localX, c, NULL, &x));
160963a3b9bcSJacob Faibussowitsch     if (debug) PetscCall(PetscPrintf(PETSC_COMM_SELF, "  elem %" PetscInt_FMT " diff %g\n", c, (double)elemDiff));
161040e14135SMatthew G. Knepley     localDiff += elemDiff;
161140e14135SMatthew G. Knepley   }
16129566063dSJacob Faibussowitsch   PetscCall(PetscFree6(funcVal, coords, fegeom.J, fegeom.invJ, interpolant, fegeom.detJ));
16139566063dSJacob Faibussowitsch   PetscCall(DMRestoreLocalVector(dm, &localX));
1614462c564dSBarry Smith   PetscCallMPI(MPIU_Allreduce(&localDiff, diff, 1, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)dm)));
161540e14135SMatthew G. Knepley   *diff = PetscSqrtReal(*diff);
16163ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1617cb1e1211SMatthew G Knepley }
1618cb1e1211SMatthew G Knepley 
1619d71ae5a4SJacob Faibussowitsch PetscErrorCode DMComputeL2FieldDiff_Plex(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal[], PetscInt, PetscScalar *, void *), void **ctxs, Vec X, PetscReal *diff)
1620d71ae5a4SJacob Faibussowitsch {
16210f09c10fSMatthew G. Knepley   const PetscInt debug = ((DM_Plex *)dm->data)->printL2;
1622ca3d3a14SMatthew G. Knepley   DM             tdm;
1623083401c6SMatthew G. Knepley   DMLabel        depthLabel;
162473d901b8SMatthew G. Knepley   PetscSection   section;
1625ca3d3a14SMatthew G. Knepley   Vec            localX, tv;
162673d901b8SMatthew G. Knepley   PetscReal     *localDiff;
1627083401c6SMatthew G. Knepley   PetscInt       dim, depth, dE, Nf, f, Nds, s;
1628ca3d3a14SMatthew G. Knepley   PetscBool      transform;
162973d901b8SMatthew G. Knepley 
163073d901b8SMatthew G. Knepley   PetscFunctionBegin;
16319566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dm, &dim));
16329566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateDim(dm, &dE));
16339566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dm, &section));
16349566063dSJacob Faibussowitsch   PetscCall(DMGetLocalVector(dm, &localX));
16359566063dSJacob Faibussowitsch   PetscCall(DMGetBasisTransformDM_Internal(dm, &tdm));
16369566063dSJacob Faibussowitsch   PetscCall(DMGetBasisTransformVec_Internal(dm, &tv));
16379566063dSJacob Faibussowitsch   PetscCall(DMHasBasisTransform(dm, &transform));
16389566063dSJacob Faibussowitsch   PetscCall(DMGetNumFields(dm, &Nf));
16399566063dSJacob Faibussowitsch   PetscCall(DMPlexGetDepthLabel(dm, &depthLabel));
16409566063dSJacob Faibussowitsch   PetscCall(DMLabelGetNumValues(depthLabel, &depth));
1641083401c6SMatthew G. Knepley 
16429566063dSJacob Faibussowitsch   PetscCall(VecSet(localX, 0.0));
16439566063dSJacob Faibussowitsch   PetscCall(DMGlobalToLocalBegin(dm, X, INSERT_VALUES, localX));
16449566063dSJacob Faibussowitsch   PetscCall(DMGlobalToLocalEnd(dm, X, INSERT_VALUES, localX));
16459566063dSJacob Faibussowitsch   PetscCall(DMProjectFunctionLocal(dm, time, funcs, ctxs, INSERT_BC_VALUES, localX));
16469566063dSJacob Faibussowitsch   PetscCall(DMGetNumDS(dm, &Nds));
16479566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(Nf, &localDiff));
1648083401c6SMatthew G. Knepley   for (s = 0; s < Nds; ++s) {
1649083401c6SMatthew G. Knepley     PetscDS          ds;
1650083401c6SMatthew G. Knepley     DMLabel          label;
1651083401c6SMatthew G. Knepley     IS               fieldIS, pointIS;
1652083401c6SMatthew G. Knepley     const PetscInt  *fields, *points = NULL;
1653083401c6SMatthew G. Knepley     PetscQuadrature  quad;
1654083401c6SMatthew G. Knepley     const PetscReal *quadPoints, *quadWeights;
1655083401c6SMatthew G. Knepley     PetscFEGeom      fegeom;
1656083401c6SMatthew G. Knepley     PetscReal       *coords, *gcoords;
1657083401c6SMatthew G. Knepley     PetscScalar     *funcVal, *interpolant;
16585fedec97SMatthew G. Knepley     PetscBool        isCohesive;
1659083401c6SMatthew G. Knepley     PetscInt         qNc, Nq, totNc, cStart = 0, cEnd, c, dsNf;
166073d901b8SMatthew G. Knepley 
166107218a29SMatthew G. Knepley     PetscCall(DMGetRegionNumDS(dm, s, &label, &fieldIS, &ds, NULL));
16629566063dSJacob Faibussowitsch     PetscCall(ISGetIndices(fieldIS, &fields));
16639566063dSJacob Faibussowitsch     PetscCall(PetscDSIsCohesive(ds, &isCohesive));
16649566063dSJacob Faibussowitsch     PetscCall(PetscDSGetNumFields(ds, &dsNf));
16659566063dSJacob Faibussowitsch     PetscCall(PetscDSGetTotalComponents(ds, &totNc));
16669566063dSJacob Faibussowitsch     PetscCall(PetscDSGetQuadrature(ds, &quad));
16679566063dSJacob Faibussowitsch     PetscCall(PetscQuadratureGetData(quad, NULL, &qNc, &Nq, &quadPoints, &quadWeights));
166863a3b9bcSJacob Faibussowitsch     PetscCheck(!(qNc != 1) || !(qNc != totNc), PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Quadrature components %" PetscInt_FMT " != %" PetscInt_FMT " field components", qNc, totNc);
16699566063dSJacob Faibussowitsch     PetscCall(PetscCalloc6(totNc, &funcVal, totNc, &interpolant, dE * (Nq + 1), &coords, Nq, &fegeom.detJ, dE * dE * Nq, &fegeom.J, dE * dE * Nq, &fegeom.invJ));
1670083401c6SMatthew G. Knepley     if (!label) {
16719566063dSJacob Faibussowitsch       PetscCall(DMPlexGetSimplexOrBoxCells(dm, 0, &cStart, &cEnd));
1672083401c6SMatthew G. Knepley     } else {
16739566063dSJacob Faibussowitsch       PetscCall(DMLabelGetStratumIS(label, 1, &pointIS));
16749566063dSJacob Faibussowitsch       PetscCall(ISGetLocalSize(pointIS, &cEnd));
16759566063dSJacob Faibussowitsch       PetscCall(ISGetIndices(pointIS, &points));
1676083401c6SMatthew G. Knepley     }
167773d901b8SMatthew G. Knepley     for (c = cStart; c < cEnd; ++c) {
1678083401c6SMatthew G. Knepley       const PetscInt  cell = points ? points[c] : c;
167973d901b8SMatthew G. Knepley       PetscScalar    *x    = NULL;
16805fedec97SMatthew G. Knepley       const PetscInt *cone;
16815fedec97SMatthew G. Knepley       PetscInt        qc = 0, fOff = 0, dep;
168273d901b8SMatthew G. Knepley 
16839566063dSJacob Faibussowitsch       PetscCall(DMLabelGetValue(depthLabel, cell, &dep));
1684083401c6SMatthew G. Knepley       if (dep != depth - 1) continue;
16855fedec97SMatthew G. Knepley       if (isCohesive) {
16869566063dSJacob Faibussowitsch         PetscCall(DMPlexGetCone(dm, cell, &cone));
16879566063dSJacob Faibussowitsch         PetscCall(DMPlexComputeCellGeometryFEM(dm, cone[0], quad, coords, fegeom.J, fegeom.invJ, fegeom.detJ));
168896959cd1SMatthew G. Knepley       } else {
16899566063dSJacob Faibussowitsch         PetscCall(DMPlexComputeCellGeometryFEM(dm, cell, quad, coords, fegeom.J, fegeom.invJ, fegeom.detJ));
169096959cd1SMatthew G. Knepley       }
1691e8e188d2SZach Atkins       PetscCall(DMPlexVecGetOrientedClosure_Internal(dm, NULL, PETSC_FALSE, localX, cell, 0, NULL, &x));
16925fedec97SMatthew G. Knepley       for (f = 0; f < dsNf; ++f) {
169315496722SMatthew G. Knepley         PetscObject  obj;
169415496722SMatthew G. Knepley         PetscClassId id;
1695083401c6SMatthew G. Knepley         void *const  ctx = ctxs ? ctxs[fields[f]] : NULL;
169615496722SMatthew G. Knepley         PetscInt     Nb, Nc, q, fc;
169715496722SMatthew G. Knepley         PetscReal    elemDiff = 0.0;
16985fedec97SMatthew G. Knepley         PetscBool    cohesive;
169915496722SMatthew G. Knepley 
17009566063dSJacob Faibussowitsch         PetscCall(PetscDSGetCohesive(ds, f, &cohesive));
17019566063dSJacob Faibussowitsch         PetscCall(PetscDSGetDiscretization(ds, f, &obj));
17029566063dSJacob Faibussowitsch         PetscCall(PetscObjectGetClassId(obj, &id));
17039371c9d4SSatish Balay         if (id == PETSCFE_CLASSID) {
17049371c9d4SSatish Balay           PetscCall(PetscFEGetNumComponents((PetscFE)obj, &Nc));
17059371c9d4SSatish Balay           PetscCall(PetscFEGetDimension((PetscFE)obj, &Nb));
17069371c9d4SSatish Balay         } else if (id == PETSCFV_CLASSID) {
17079371c9d4SSatish Balay           PetscCall(PetscFVGetNumComponents((PetscFV)obj, &Nc));
17089371c9d4SSatish Balay           Nb = 1;
17099371c9d4SSatish Balay         } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, fields[f]);
1710c82db6dbSMatthew G. Knepley         if (isCohesive && !cohesive) {
1711c82db6dbSMatthew G. Knepley           fOff += Nb * 2;
1712c82db6dbSMatthew G. Knepley           qc += Nc;
1713c82db6dbSMatthew G. Knepley           continue;
1714c82db6dbSMatthew G. Knepley         }
171573d901b8SMatthew G. Knepley         if (debug) {
171673d901b8SMatthew G. Knepley           char title[1024];
171763a3b9bcSJacob Faibussowitsch           PetscCall(PetscSNPrintf(title, 1023, "Solution for Field %" PetscInt_FMT, fields[f]));
17189566063dSJacob Faibussowitsch           PetscCall(DMPrintCellVector(cell, title, Nb, &x[fOff]));
171973d901b8SMatthew G. Knepley         }
17207318780aSToby Isaac         for (q = 0; q < Nq; ++q) {
17212a4e142eSMatthew G. Knepley           PetscFEGeom    qgeom;
1722d0609cedSBarry Smith           PetscErrorCode ierr;
17232a4e142eSMatthew G. Knepley 
17242a4e142eSMatthew G. Knepley           qgeom.dimEmbed = fegeom.dimEmbed;
1725083401c6SMatthew G. Knepley           qgeom.J        = &fegeom.J[q * dE * dE];
1726083401c6SMatthew G. Knepley           qgeom.invJ     = &fegeom.invJ[q * dE * dE];
17272a4e142eSMatthew G. Knepley           qgeom.detJ     = &fegeom.detJ[q];
172863a3b9bcSJacob Faibussowitsch           PetscCheck(fegeom.detJ[q] > 0.0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Invalid determinant %g for cell %" PetscInt_FMT ", quadrature point %" PetscInt_FMT, (double)fegeom.detJ[q], cell, q);
1729d3a7d86cSMatthew G. Knepley           if (transform) {
1730083401c6SMatthew G. Knepley             gcoords = &coords[dE * Nq];
17319566063dSJacob Faibussowitsch             PetscCall(DMPlexBasisTransformApplyReal_Internal(dm, &coords[dE * q], PETSC_TRUE, dE, &coords[dE * q], gcoords, dm->transformCtx));
1732d3a7d86cSMatthew G. Knepley           } else {
1733083401c6SMatthew G. Knepley             gcoords = &coords[dE * q];
1734d3a7d86cSMatthew G. Knepley           }
17352df84da0SMatthew G. Knepley           for (fc = 0; fc < Nc; ++fc) funcVal[fc] = 0.;
1736083401c6SMatthew G. Knepley           ierr = (*funcs[fields[f]])(dE, time, gcoords, Nc, funcVal, ctx);
1737e735a8a9SMatthew G. Knepley           if (ierr) {
17389566063dSJacob Faibussowitsch             PetscCall(DMPlexVecRestoreClosure(dm, NULL, localX, cell, NULL, &x));
17399566063dSJacob Faibussowitsch             PetscCall(DMRestoreLocalVector(dm, &localX));
17409566063dSJacob Faibussowitsch             PetscCall(PetscFree6(funcVal, interpolant, coords, fegeom.detJ, fegeom.J, fegeom.invJ));
1741e735a8a9SMatthew G. Knepley           }
17429566063dSJacob Faibussowitsch           if (transform) PetscCall(DMPlexBasisTransformApply_Internal(dm, &coords[dE * q], PETSC_FALSE, Nc, funcVal, funcVal, dm->transformCtx));
174396959cd1SMatthew G. Knepley           /* Call once for each face, except for lagrange field */
17449566063dSJacob Faibussowitsch           if (id == PETSCFE_CLASSID) PetscCall(PetscFEInterpolate_Static((PetscFE)obj, &x[fOff], &qgeom, q, interpolant));
17459566063dSJacob Faibussowitsch           else if (id == PETSCFV_CLASSID) PetscCall(PetscFVInterpolate_Static((PetscFV)obj, &x[fOff], q, interpolant));
174663a3b9bcSJacob Faibussowitsch           else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, fields[f]);
174715496722SMatthew G. Knepley           for (fc = 0; fc < Nc; ++fc) {
1748beaa55a6SMatthew G. Knepley             const PetscReal wt = quadWeights[q * qNc + (qNc == 1 ? 0 : qc + fc)];
17499371c9d4SSatish Balay             if (debug)
1750835f2295SStefano Zampini               PetscCall(PetscPrintf(PETSC_COMM_SELF, "    cell %" PetscInt_FMT " field %" PetscInt_FMT ",%" PetscInt_FMT " point %g %g %g diff %g\n", cell, fields[f], fc, (double)(dE > 0 ? coords[dE * q] : 0), (double)(dE > 1 ? coords[dE * q + 1] : 0), (double)(dE > 2 ? coords[dE * q + 2] : 0),
17519371c9d4SSatish Balay                                     (double)(PetscSqr(PetscRealPart(interpolant[fc] - funcVal[fc])) * wt * fegeom.detJ[q])));
17524bee2e38SMatthew G. Knepley             elemDiff += PetscSqr(PetscRealPart(interpolant[fc] - funcVal[fc])) * wt * fegeom.detJ[q];
175373d901b8SMatthew G. Knepley           }
175473d901b8SMatthew G. Knepley         }
1755083401c6SMatthew G. Knepley         fOff += Nb;
17569c3cf19fSMatthew G. Knepley         qc += Nc;
1757083401c6SMatthew G. Knepley         localDiff[fields[f]] += elemDiff;
175863a3b9bcSJacob Faibussowitsch         if (debug) PetscCall(PetscPrintf(PETSC_COMM_SELF, "  cell %" PetscInt_FMT " field %" PetscInt_FMT " cum diff %g\n", cell, fields[f], (double)localDiff[fields[f]]));
175973d901b8SMatthew G. Knepley       }
17609566063dSJacob Faibussowitsch       PetscCall(DMPlexVecRestoreClosure(dm, NULL, localX, cell, NULL, &x));
1761083401c6SMatthew G. Knepley     }
1762083401c6SMatthew G. Knepley     if (label) {
17639566063dSJacob Faibussowitsch       PetscCall(ISRestoreIndices(pointIS, &points));
17649566063dSJacob Faibussowitsch       PetscCall(ISDestroy(&pointIS));
1765083401c6SMatthew G. Knepley     }
17669566063dSJacob Faibussowitsch     PetscCall(ISRestoreIndices(fieldIS, &fields));
17679566063dSJacob Faibussowitsch     PetscCall(PetscFree6(funcVal, interpolant, coords, fegeom.detJ, fegeom.J, fegeom.invJ));
176873d901b8SMatthew G. Knepley   }
17699566063dSJacob Faibussowitsch   PetscCall(DMRestoreLocalVector(dm, &localX));
1770*e91c04dfSPierre Jolivet   PetscCallMPI(MPIU_Allreduce(localDiff, diff, Nf, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)dm)));
17719566063dSJacob Faibussowitsch   PetscCall(PetscFree(localDiff));
1772083401c6SMatthew G. Knepley   for (f = 0; f < Nf; ++f) diff[f] = PetscSqrtReal(diff[f]);
17733ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
177473d901b8SMatthew G. Knepley }
177573d901b8SMatthew G. Knepley 
1776e729f68cSMatthew G. Knepley /*@C
1777e729f68cSMatthew G. Knepley   DMPlexComputeL2DiffVec - This function computes the cellwise L_2 difference between a function u and an FEM interpolant solution u_h, and stores it in a Vec.
1778e729f68cSMatthew G. Knepley 
177920f4b53cSBarry Smith   Collective
1780c0f8e1fdSMatthew G. Knepley 
1781e729f68cSMatthew G. Knepley   Input Parameters:
1782a1cb98faSBarry Smith + dm    - The `DM`
17830163fd50SMatthew G. Knepley . time  - The time
178420f4b53cSBarry Smith . funcs - The functions to evaluate for each field component: `NULL` means that component does not contribute to error calculation
178520f4b53cSBarry Smith . ctxs  - Optional array of contexts to pass to each function, or `NULL`.
1786e729f68cSMatthew G. Knepley - X     - The coefficient vector u_h
1787e729f68cSMatthew G. Knepley 
1788e729f68cSMatthew G. Knepley   Output Parameter:
178920f4b53cSBarry Smith . D - A `Vec` which holds the difference ||u - u_h||_2 for each cell
1790e729f68cSMatthew G. Knepley 
1791e729f68cSMatthew G. Knepley   Level: developer
1792e729f68cSMatthew G. Knepley 
17931cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMProjectFunction()`, `DMComputeL2Diff()`, `DMPlexComputeL2FieldDiff()`, `DMComputeL2GradientDiff()`
1794e729f68cSMatthew G. Knepley @*/
1795d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeL2DiffVec(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal[], PetscInt, PetscScalar *, void *), void **ctxs, Vec X, Vec D)
1796d71ae5a4SJacob Faibussowitsch {
1797e729f68cSMatthew G. Knepley   PetscSection     section;
1798e729f68cSMatthew G. Knepley   PetscQuadrature  quad;
1799e729f68cSMatthew G. Knepley   Vec              localX;
18004bee2e38SMatthew G. Knepley   PetscFEGeom      fegeom;
1801e729f68cSMatthew G. Knepley   PetscScalar     *funcVal, *interpolant;
18024bee2e38SMatthew G. Knepley   PetscReal       *coords;
1803e729f68cSMatthew G. Knepley   const PetscReal *quadPoints, *quadWeights;
1804485ad865SMatthew G. Knepley   PetscInt         dim, coordDim, numFields, numComponents = 0, qNc, Nq, cStart, cEnd, c, field, fieldOffset;
1805e729f68cSMatthew G. Knepley 
1806e729f68cSMatthew G. Knepley   PetscFunctionBegin;
18079566063dSJacob Faibussowitsch   PetscCall(VecSet(D, 0.0));
18089566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dm, &dim));
18099566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateDim(dm, &coordDim));
18109566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dm, &section));
18119566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetNumFields(section, &numFields));
18129566063dSJacob Faibussowitsch   PetscCall(DMGetLocalVector(dm, &localX));
18139566063dSJacob Faibussowitsch   PetscCall(DMProjectFunctionLocal(dm, time, funcs, ctxs, INSERT_BC_VALUES, localX));
18149566063dSJacob Faibussowitsch   PetscCall(DMGlobalToLocalBegin(dm, X, INSERT_VALUES, localX));
18159566063dSJacob Faibussowitsch   PetscCall(DMGlobalToLocalEnd(dm, X, INSERT_VALUES, localX));
1816e729f68cSMatthew G. Knepley   for (field = 0; field < numFields; ++field) {
1817e729f68cSMatthew G. Knepley     PetscObject  obj;
1818e729f68cSMatthew G. Knepley     PetscClassId id;
1819e729f68cSMatthew G. Knepley     PetscInt     Nc;
1820e729f68cSMatthew G. Knepley 
18219566063dSJacob Faibussowitsch     PetscCall(DMGetField(dm, field, NULL, &obj));
18229566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetClassId(obj, &id));
1823e729f68cSMatthew G. Knepley     if (id == PETSCFE_CLASSID) {
1824e729f68cSMatthew G. Knepley       PetscFE fe = (PetscFE)obj;
1825e729f68cSMatthew G. Knepley 
18269566063dSJacob Faibussowitsch       PetscCall(PetscFEGetQuadrature(fe, &quad));
18279566063dSJacob Faibussowitsch       PetscCall(PetscFEGetNumComponents(fe, &Nc));
1828e729f68cSMatthew G. Knepley     } else if (id == PETSCFV_CLASSID) {
1829e729f68cSMatthew G. Knepley       PetscFV fv = (PetscFV)obj;
1830e729f68cSMatthew G. Knepley 
18319566063dSJacob Faibussowitsch       PetscCall(PetscFVGetQuadrature(fv, &quad));
18329566063dSJacob Faibussowitsch       PetscCall(PetscFVGetNumComponents(fv, &Nc));
183363a3b9bcSJacob Faibussowitsch     } else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, field);
1834e729f68cSMatthew G. Knepley     numComponents += Nc;
1835e729f68cSMatthew G. Knepley   }
18369566063dSJacob Faibussowitsch   PetscCall(PetscQuadratureGetData(quad, NULL, &qNc, &Nq, &quadPoints, &quadWeights));
183763a3b9bcSJacob Faibussowitsch   PetscCheck(!(qNc != 1) || !(qNc != numComponents), PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_SIZ, "Quadrature components %" PetscInt_FMT " != %" PetscInt_FMT " field components", qNc, numComponents);
18389566063dSJacob Faibussowitsch   PetscCall(PetscMalloc6(numComponents, &funcVal, numComponents, &interpolant, coordDim * Nq, &coords, Nq, &fegeom.detJ, coordDim * coordDim * Nq, &fegeom.J, coordDim * coordDim * Nq, &fegeom.invJ));
18399566063dSJacob Faibussowitsch   PetscCall(DMPlexGetSimplexOrBoxCells(dm, 0, &cStart, &cEnd));
1840e729f68cSMatthew G. Knepley   for (c = cStart; c < cEnd; ++c) {
1841e729f68cSMatthew G. Knepley     PetscScalar *x        = NULL;
18426f288a59SMatthew G. Knepley     PetscScalar  elemDiff = 0.0;
18439c3cf19fSMatthew G. Knepley     PetscInt     qc       = 0;
1844e729f68cSMatthew G. Knepley 
18459566063dSJacob Faibussowitsch     PetscCall(DMPlexComputeCellGeometryFEM(dm, c, quad, coords, fegeom.J, fegeom.invJ, fegeom.detJ));
1846e8e188d2SZach Atkins     PetscCall(DMPlexVecGetOrientedClosure_Internal(dm, NULL, PETSC_FALSE, localX, c, 0, NULL, &x));
1847e729f68cSMatthew G. Knepley 
1848e729f68cSMatthew G. Knepley     for (field = 0, fieldOffset = 0; field < numFields; ++field) {
1849e729f68cSMatthew G. Knepley       PetscObject  obj;
1850e729f68cSMatthew G. Knepley       PetscClassId id;
1851e729f68cSMatthew G. Knepley       void *const  ctx = ctxs ? ctxs[field] : NULL;
1852e729f68cSMatthew G. Knepley       PetscInt     Nb, Nc, q, fc;
1853e729f68cSMatthew G. Knepley 
18549566063dSJacob Faibussowitsch       PetscCall(DMGetField(dm, field, NULL, &obj));
18559566063dSJacob Faibussowitsch       PetscCall(PetscObjectGetClassId(obj, &id));
18569371c9d4SSatish Balay       if (id == PETSCFE_CLASSID) {
18579371c9d4SSatish Balay         PetscCall(PetscFEGetNumComponents((PetscFE)obj, &Nc));
18589371c9d4SSatish Balay         PetscCall(PetscFEGetDimension((PetscFE)obj, &Nb));
18599371c9d4SSatish Balay       } else if (id == PETSCFV_CLASSID) {
18609371c9d4SSatish Balay         PetscCall(PetscFVGetNumComponents((PetscFV)obj, &Nc));
18619371c9d4SSatish Balay         Nb = 1;
18629371c9d4SSatish Balay       } else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, field);
186323f34ed2SToby Isaac       if (funcs[field]) {
18647318780aSToby Isaac         for (q = 0; q < Nq; ++q) {
18652a4e142eSMatthew G. Knepley           PetscFEGeom qgeom;
18662a4e142eSMatthew G. Knepley 
18672a4e142eSMatthew G. Knepley           qgeom.dimEmbed = fegeom.dimEmbed;
18682a4e142eSMatthew G. Knepley           qgeom.J        = &fegeom.J[q * coordDim * coordDim];
18692a4e142eSMatthew G. Knepley           qgeom.invJ     = &fegeom.invJ[q * coordDim * coordDim];
18702a4e142eSMatthew G. Knepley           qgeom.detJ     = &fegeom.detJ[q];
187163a3b9bcSJacob Faibussowitsch           PetscCheck(fegeom.detJ[q] > 0.0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Invalid determinant %g for element %" PetscInt_FMT ", quadrature points %" PetscInt_FMT, (double)fegeom.detJ[q], c, q);
18729566063dSJacob Faibussowitsch           PetscCall((*funcs[field])(coordDim, time, &coords[q * coordDim], Nc, funcVal, ctx));
1873c3e24edfSBarry Smith #if defined(needs_fix_with_return_code_argument)
1874e735a8a9SMatthew G. Knepley           if (ierr) {
18759566063dSJacob Faibussowitsch             PetscCall(DMPlexVecRestoreClosure(dm, NULL, localX, c, NULL, &x));
18769566063dSJacob Faibussowitsch             PetscCall(PetscFree6(funcVal, interpolant, coords, fegeom.detJ, fegeom.J, fegeom.invJ));
18779566063dSJacob Faibussowitsch             PetscCall(DMRestoreLocalVector(dm, &localX));
1878e735a8a9SMatthew G. Knepley           }
1879c3e24edfSBarry Smith #endif
18809566063dSJacob Faibussowitsch           if (id == PETSCFE_CLASSID) PetscCall(PetscFEInterpolate_Static((PetscFE)obj, &x[fieldOffset], &qgeom, q, interpolant));
18819566063dSJacob Faibussowitsch           else if (id == PETSCFV_CLASSID) PetscCall(PetscFVInterpolate_Static((PetscFV)obj, &x[fieldOffset], q, interpolant));
188263a3b9bcSJacob Faibussowitsch           else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, field);
1883e729f68cSMatthew G. Knepley           for (fc = 0; fc < Nc; ++fc) {
1884beaa55a6SMatthew G. Knepley             const PetscReal wt = quadWeights[q * qNc + (qNc == 1 ? 0 : qc + fc)];
18854bee2e38SMatthew G. Knepley             elemDiff += PetscSqr(PetscRealPart(interpolant[fc] - funcVal[fc])) * wt * fegeom.detJ[q];
1886e729f68cSMatthew G. Knepley           }
1887e729f68cSMatthew G. Knepley         }
188823f34ed2SToby Isaac       }
1889beaa55a6SMatthew G. Knepley       fieldOffset += Nb;
18909c3cf19fSMatthew G. Knepley       qc += Nc;
1891e729f68cSMatthew G. Knepley     }
18929566063dSJacob Faibussowitsch     PetscCall(DMPlexVecRestoreClosure(dm, NULL, localX, c, NULL, &x));
18939566063dSJacob Faibussowitsch     PetscCall(VecSetValue(D, c - cStart, elemDiff, INSERT_VALUES));
1894e729f68cSMatthew G. Knepley   }
18959566063dSJacob Faibussowitsch   PetscCall(PetscFree6(funcVal, interpolant, coords, fegeom.detJ, fegeom.J, fegeom.invJ));
18969566063dSJacob Faibussowitsch   PetscCall(DMRestoreLocalVector(dm, &localX));
18979566063dSJacob Faibussowitsch   PetscCall(VecSqrtAbs(D));
18983ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1899e729f68cSMatthew G. Knepley }
1900e729f68cSMatthew G. Knepley 
19015f0b18bfSMatthew G. Knepley /*@
19022353bfffSMatthew G. Knepley   DMPlexComputeL2FluxDiffVecLocal - This function computes the integral of the difference between the gradient of field `f`in `u` and field `mf` in `mu`
19032353bfffSMatthew G. Knepley 
19042353bfffSMatthew G. Knepley   Collective
19052353bfffSMatthew G. Knepley 
19062353bfffSMatthew G. Knepley   Input Parameters:
19072353bfffSMatthew G. Knepley + lu  - The local `Vec` containing the primal solution
19082353bfffSMatthew G. Knepley . f   - The field number for the potential
19092353bfffSMatthew G. Knepley . lmu - The local `Vec` containing the mixed solution
19102353bfffSMatthew G. Knepley - mf  - The field number for the flux
19112353bfffSMatthew G. Knepley 
19122353bfffSMatthew G. Knepley   Output Parameter:
19132353bfffSMatthew G. Knepley . eFlux - A global `Vec` which holds $||\nabla u_f - \mu_{mf}||$
19142353bfffSMatthew G. Knepley 
19152353bfffSMatthew G. Knepley   Level: advanced
19162353bfffSMatthew G. Knepley 
19172353bfffSMatthew G. Knepley   Notes:
19182353bfffSMatthew G. Knepley   We assume that the `DM` for each solution has the same topology, geometry, and quadrature.
19192353bfffSMatthew G. Knepley 
19202353bfffSMatthew G. Knepley   This is usually used to get an error estimate for the primal solution, using the flux from a mixed solution.
19212353bfffSMatthew G. Knepley 
19222353bfffSMatthew G. Knepley .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexComputeL2FluxDiffVec()`, `DMProjectFunction()`, `DMComputeL2Diff()`, `DMPlexComputeL2FieldDiff()`, `DMComputeL2GradientDiff()`
19232353bfffSMatthew G. Knepley @*/
19242353bfffSMatthew G. Knepley PetscErrorCode DMPlexComputeL2FluxDiffVecLocal(Vec lu, PetscInt f, Vec lmu, PetscInt mf, Vec eFlux)
19252353bfffSMatthew G. Knepley {
19262353bfffSMatthew G. Knepley   DM               dm, mdm, edm;
19272353bfffSMatthew G. Knepley   PetscFE          fe, mfe;
19282353bfffSMatthew G. Knepley   PetscFEGeom      fegeom;
19292353bfffSMatthew G. Knepley   PetscQuadrature  quad;
19302353bfffSMatthew G. Knepley   const PetscReal *quadWeights;
19312353bfffSMatthew G. Knepley   PetscReal       *coords;
19322353bfffSMatthew G. Knepley   PetscScalar     *interpolant, *minterpolant, *earray;
19332353bfffSMatthew G. Knepley   PetscInt         cdim, mcdim, cStart, cEnd, Nc, mNc, qNc, Nq;
19342353bfffSMatthew G. Knepley   MPI_Comm         comm;
19352353bfffSMatthew G. Knepley 
19362353bfffSMatthew G. Knepley   PetscFunctionBegin;
19372353bfffSMatthew G. Knepley   PetscCall(VecGetDM(lu, &dm));
19382353bfffSMatthew G. Knepley   PetscCall(VecGetDM(lmu, &mdm));
19392353bfffSMatthew G. Knepley   PetscCall(VecGetDM(eFlux, &edm));
19402353bfffSMatthew G. Knepley   PetscCall(PetscObjectGetComm((PetscObject)dm, &comm));
19412353bfffSMatthew G. Knepley   PetscCall(VecSet(eFlux, 0.0));
19422353bfffSMatthew G. Knepley 
19432353bfffSMatthew G. Knepley   // Check if the both problems are on the same mesh
19442353bfffSMatthew G. Knepley   PetscCall(DMGetCoordinateDim(dm, &cdim));
19452353bfffSMatthew G. Knepley   PetscCall(DMGetCoordinateDim(mdm, &mcdim));
19462353bfffSMatthew G. Knepley   PetscCheck(cdim == mcdim, comm, PETSC_ERR_ARG_SIZ, "primal coordinate Dim %" PetscInt_FMT " != %" PetscInt_FMT " mixed coordinate Dim", cdim, mcdim);
19472353bfffSMatthew G. Knepley   fegeom.dimEmbed = cdim;
19482353bfffSMatthew G. Knepley 
19492353bfffSMatthew G. Knepley   PetscCall(DMGetField(dm, f, NULL, (PetscObject *)&fe));
19502353bfffSMatthew G. Knepley   PetscCall(DMGetField(mdm, mf, NULL, (PetscObject *)&mfe));
19512353bfffSMatthew G. Knepley   PetscCall(PetscFEGetNumComponents(fe, &Nc));
19522353bfffSMatthew G. Knepley   PetscCall(PetscFEGetNumComponents(mfe, &mNc));
19532353bfffSMatthew G. Knepley   PetscCall(PetscFEGetQuadrature(fe, &quad));
19542353bfffSMatthew G. Knepley   PetscCall(PetscQuadratureGetData(quad, NULL, &qNc, &Nq, NULL, &quadWeights));
19552353bfffSMatthew G. Knepley   PetscCheck(qNc == 1 || qNc == mNc, comm, PETSC_ERR_ARG_SIZ, "Quadrature components %" PetscInt_FMT " != %" PetscInt_FMT " field components", qNc, mNc);
19562353bfffSMatthew G. Knepley 
19572353bfffSMatthew G. Knepley   PetscCall(DMPlexGetSimplexOrBoxCells(dm, 0, &cStart, &cEnd));
19582353bfffSMatthew G. Knepley   PetscCall(VecGetArrayWrite(eFlux, &earray));
19592353bfffSMatthew G. Knepley   PetscCall(PetscMalloc6(Nc * cdim, &interpolant, mNc * cdim, &minterpolant, cdim * (Nq + 1), &coords, cdim * cdim * Nq, &fegeom.J, cdim * cdim * Nq, &fegeom.invJ, Nq, &fegeom.detJ));
19602353bfffSMatthew G. Knepley   for (PetscInt c = cStart; c < cEnd; ++c) {
19612353bfffSMatthew G. Knepley     PetscScalar *x            = NULL;
19622353bfffSMatthew G. Knepley     PetscScalar *mx           = NULL;
19632353bfffSMatthew G. Knepley     PetscScalar *eval         = NULL;
19642353bfffSMatthew G. Knepley     PetscReal    fluxElemDiff = 0.0;
19652353bfffSMatthew G. Knepley 
19662353bfffSMatthew G. Knepley     PetscCall(DMPlexComputeCellGeometryFEM(dm, c, quad, coords, fegeom.J, fegeom.invJ, fegeom.detJ));
19672353bfffSMatthew G. Knepley     PetscCall(DMPlexVecGetClosure(dm, NULL, lu, c, NULL, &x));
19682353bfffSMatthew G. Knepley     PetscCall(DMPlexVecGetClosure(mdm, NULL, lmu, c, NULL, &mx));
19692353bfffSMatthew G. Knepley 
19702353bfffSMatthew G. Knepley     for (PetscInt q = 0; q < Nq; ++q) {
19712353bfffSMatthew G. Knepley       PetscFEGeom qgeom;
19722353bfffSMatthew G. Knepley 
19732353bfffSMatthew G. Knepley       qgeom.dimEmbed = fegeom.dimEmbed;
19742353bfffSMatthew G. Knepley       qgeom.J        = &fegeom.J[q * cdim * cdim];
19752353bfffSMatthew G. Knepley       qgeom.invJ     = &fegeom.invJ[q * cdim * cdim];
19762353bfffSMatthew G. Knepley       qgeom.detJ     = &fegeom.detJ[q];
19772353bfffSMatthew G. Knepley 
19782353bfffSMatthew G. Knepley       PetscCheck(fegeom.detJ[q] > 0.0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Invalid determinant %g for element %" PetscInt_FMT ", quadrature points %" PetscInt_FMT, (double)fegeom.detJ[q], c, q);
19792353bfffSMatthew G. Knepley 
19802353bfffSMatthew G. Knepley       PetscCall(PetscFEInterpolate_Static(mfe, &mx[0], &qgeom, q, minterpolant));
19812353bfffSMatthew G. Knepley       PetscCall(PetscFEInterpolateGradient_Static(fe, 1, &x[0], &qgeom, q, interpolant));
19822353bfffSMatthew G. Knepley 
19832353bfffSMatthew G. Knepley       /* Now take the elementwise difference and store that in a vector. */
19842353bfffSMatthew G. Knepley       for (PetscInt fc = 0; fc < mNc; ++fc) {
19852353bfffSMatthew G. Knepley         const PetscReal wt = quadWeights[q * qNc + (qNc == 1 ? 0 : fc)];
19862353bfffSMatthew G. Knepley         fluxElemDiff += PetscSqr(PetscRealPart(interpolant[fc] - minterpolant[fc])) * wt * fegeom.detJ[q];
19872353bfffSMatthew G. Knepley       }
19882353bfffSMatthew G. Knepley     }
19892353bfffSMatthew G. Knepley     PetscCall(DMPlexVecRestoreClosure(dm, NULL, lu, c, NULL, &x));
19902353bfffSMatthew G. Knepley     PetscCall(DMPlexVecRestoreClosure(mdm, NULL, lmu, c, NULL, &mx));
19912353bfffSMatthew G. Knepley     PetscCall(DMPlexPointGlobalRef(edm, c, earray, (void *)&eval));
19922353bfffSMatthew G. Knepley     if (eval) eval[0] = fluxElemDiff;
19932353bfffSMatthew G. Knepley   }
19942353bfffSMatthew G. Knepley   PetscCall(PetscFree6(interpolant, minterpolant, coords, fegeom.detJ, fegeom.J, fegeom.invJ));
19952353bfffSMatthew G. Knepley   PetscCall(VecRestoreArrayWrite(eFlux, &earray));
19962353bfffSMatthew G. Knepley 
19972353bfffSMatthew G. Knepley   PetscCall(VecAssemblyBegin(eFlux));
19982353bfffSMatthew G. Knepley   PetscCall(VecAssemblyEnd(eFlux));
19992353bfffSMatthew G. Knepley   PetscCall(VecSqrtAbs(eFlux));
20002353bfffSMatthew G. Knepley   PetscFunctionReturn(PETSC_SUCCESS);
20012353bfffSMatthew G. Knepley }
20022353bfffSMatthew G. Knepley 
20032353bfffSMatthew G. Knepley /*@
20042353bfffSMatthew G. Knepley   DMPlexComputeL2FluxDiffVec - This function computes the integral of the difference between the gradient of field `f`in `u` and field `mf` in `mu`
20052353bfffSMatthew G. Knepley 
20062353bfffSMatthew G. Knepley   Collective
20072353bfffSMatthew G. Knepley 
20082353bfffSMatthew G. Knepley   Input Parameters:
20092353bfffSMatthew G. Knepley + u  - The global `Vec` containing the primal solution
20102353bfffSMatthew G. Knepley . f  - The field number for the potential
20112353bfffSMatthew G. Knepley . mu - The global `Vec` containing the mixed solution
20122353bfffSMatthew G. Knepley - mf - The field number for the flux
20132353bfffSMatthew G. Knepley 
20142353bfffSMatthew G. Knepley   Output Parameter:
20152353bfffSMatthew G. Knepley . eFlux - A global `Vec` which holds $||\nabla u_f - \mu_{mf}||$
20162353bfffSMatthew G. Knepley 
20172353bfffSMatthew G. Knepley   Level: advanced
20182353bfffSMatthew G. Knepley 
20192353bfffSMatthew G. Knepley   Notes:
20202353bfffSMatthew G. Knepley   We assume that the `DM` for each solution has the same topology, geometry, and quadrature.
20212353bfffSMatthew G. Knepley 
20222353bfffSMatthew G. Knepley   This is usually used to get an error estimate for the primal solution, using the flux from a mixed solution.
20232353bfffSMatthew G. Knepley 
20242353bfffSMatthew G. Knepley .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexComputeL2FluxDiffVecLocal()`, `DMProjectFunction()`, `DMComputeL2Diff()`, `DMPlexComputeL2FieldDiff()`, `DMComputeL2GradientDiff()`
20252353bfffSMatthew G. Knepley @*/
20262353bfffSMatthew G. Knepley PetscErrorCode DMPlexComputeL2FluxDiffVec(Vec u, PetscInt f, Vec mu, PetscInt mf, Vec eFlux)
20272353bfffSMatthew G. Knepley {
20282353bfffSMatthew G. Knepley   DM  dm, mdm;
20292353bfffSMatthew G. Knepley   Vec lu, lmu;
20302353bfffSMatthew G. Knepley 
20312353bfffSMatthew G. Knepley   PetscFunctionBegin;
20322353bfffSMatthew G. Knepley   PetscCall(VecGetDM(u, &dm));
20332353bfffSMatthew G. Knepley   PetscCall(DMGetLocalVector(dm, &lu));
20342353bfffSMatthew G. Knepley   PetscCall(DMGlobalToLocal(dm, u, INSERT_VALUES, lu));
20352353bfffSMatthew G. Knepley   PetscCall(DMPlexInsertBoundaryValues(dm, PETSC_TRUE, lu, 0.0, NULL, NULL, NULL));
20362353bfffSMatthew G. Knepley 
20372353bfffSMatthew G. Knepley   PetscCall(VecGetDM(mu, &mdm));
20382353bfffSMatthew G. Knepley   PetscCall(DMGetLocalVector(mdm, &lmu));
20392353bfffSMatthew G. Knepley   PetscCall(DMGlobalToLocal(mdm, mu, INSERT_VALUES, lmu));
20402353bfffSMatthew G. Knepley   PetscCall(DMPlexInsertBoundaryValues(mdm, PETSC_TRUE, lmu, 0.0, NULL, NULL, NULL));
20412353bfffSMatthew G. Knepley 
20422353bfffSMatthew G. Knepley   PetscCall(DMPlexComputeL2FluxDiffVecLocal(lu, f, lmu, mf, eFlux));
20432353bfffSMatthew G. Knepley 
20442353bfffSMatthew G. Knepley   PetscCall(DMRestoreLocalVector(dm, &lu));
20452353bfffSMatthew G. Knepley   PetscCall(DMRestoreLocalVector(mdm, &lmu));
20462353bfffSMatthew G. Knepley   PetscFunctionReturn(PETSC_SUCCESS);
20472353bfffSMatthew G. Knepley }
20482353bfffSMatthew G. Knepley 
20492353bfffSMatthew G. Knepley /*@
205020f4b53cSBarry Smith   DMPlexComputeClementInterpolant - This function computes the L2 projection of the cellwise values of a function u onto P1
20515f0b18bfSMatthew G. Knepley 
205220f4b53cSBarry Smith   Collective
20535f0b18bfSMatthew G. Knepley 
20545f0b18bfSMatthew G. Knepley   Input Parameters:
2055a1cb98faSBarry Smith + dm   - The `DM`
20565f0b18bfSMatthew G. Knepley - locX - The coefficient vector u_h
20575f0b18bfSMatthew G. Knepley 
20585f0b18bfSMatthew G. Knepley   Output Parameter:
2059a1cb98faSBarry Smith . locC - A `Vec` which holds the Clement interpolant of the function
20605f0b18bfSMatthew G. Knepley 
20615f0b18bfSMatthew G. Knepley   Level: developer
20625f0b18bfSMatthew G. Knepley 
2063a1cb98faSBarry Smith   Note:
2064a1cb98faSBarry Smith   $ u_h(v_i) = \sum_{T_i \in support(v_i)} |T_i| u_h(T_i) / \sum_{T_i \in support(v_i)} |T_i| $ where $ |T_i| $ is the cell volume
2065a1cb98faSBarry Smith 
20661cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMProjectFunction()`, `DMComputeL2Diff()`, `DMPlexComputeL2FieldDiff()`, `DMComputeL2GradientDiff()`
20675f0b18bfSMatthew G. Knepley @*/
2068d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeClementInterpolant(DM dm, Vec locX, Vec locC)
2069d71ae5a4SJacob Faibussowitsch {
20705f0b18bfSMatthew G. Knepley   PetscInt         debug = ((DM_Plex *)dm->data)->printFEM;
20715f0b18bfSMatthew G. Knepley   DM               dmc;
20725f0b18bfSMatthew G. Knepley   PetscQuadrature  quad;
20735f0b18bfSMatthew G. Knepley   PetscScalar     *interpolant, *valsum;
20745f0b18bfSMatthew G. Knepley   PetscFEGeom      fegeom;
20755f0b18bfSMatthew G. Knepley   PetscReal       *coords;
20765f0b18bfSMatthew G. Knepley   const PetscReal *quadPoints, *quadWeights;
20775f0b18bfSMatthew G. Knepley   PetscInt         dim, cdim, Nf, f, Nc = 0, Nq, qNc, cStart, cEnd, vStart, vEnd, v;
20785f0b18bfSMatthew G. Knepley 
20795f0b18bfSMatthew G. Knepley   PetscFunctionBegin;
20809566063dSJacob Faibussowitsch   PetscCall(PetscCitationsRegister(ClementCitation, &Clementcite));
20819566063dSJacob Faibussowitsch   PetscCall(VecGetDM(locC, &dmc));
20829566063dSJacob Faibussowitsch   PetscCall(VecSet(locC, 0.0));
20839566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dm, &dim));
20849566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateDim(dm, &cdim));
20855f0b18bfSMatthew G. Knepley   fegeom.dimEmbed = cdim;
20869566063dSJacob Faibussowitsch   PetscCall(DMGetNumFields(dm, &Nf));
20875f0b18bfSMatthew G. Knepley   PetscCheck(Nf > 0, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of fields is zero!");
20885f0b18bfSMatthew G. Knepley   for (f = 0; f < Nf; ++f) {
20895f0b18bfSMatthew G. Knepley     PetscObject  obj;
20905f0b18bfSMatthew G. Knepley     PetscClassId id;
20915f0b18bfSMatthew G. Knepley     PetscInt     fNc;
20925f0b18bfSMatthew G. Knepley 
20939566063dSJacob Faibussowitsch     PetscCall(DMGetField(dm, f, NULL, &obj));
20949566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetClassId(obj, &id));
20955f0b18bfSMatthew G. Knepley     if (id == PETSCFE_CLASSID) {
20965f0b18bfSMatthew G. Knepley       PetscFE fe = (PetscFE)obj;
20975f0b18bfSMatthew G. Knepley 
20989566063dSJacob Faibussowitsch       PetscCall(PetscFEGetQuadrature(fe, &quad));
20999566063dSJacob Faibussowitsch       PetscCall(PetscFEGetNumComponents(fe, &fNc));
21005f0b18bfSMatthew G. Knepley     } else if (id == PETSCFV_CLASSID) {
21015f0b18bfSMatthew G. Knepley       PetscFV fv = (PetscFV)obj;
21025f0b18bfSMatthew G. Knepley 
21039566063dSJacob Faibussowitsch       PetscCall(PetscFVGetQuadrature(fv, &quad));
21049566063dSJacob Faibussowitsch       PetscCall(PetscFVGetNumComponents(fv, &fNc));
210563a3b9bcSJacob Faibussowitsch     } else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, f);
21065f0b18bfSMatthew G. Knepley     Nc += fNc;
21075f0b18bfSMatthew G. Knepley   }
21089566063dSJacob Faibussowitsch   PetscCall(PetscQuadratureGetData(quad, NULL, &qNc, &Nq, &quadPoints, &quadWeights));
210963a3b9bcSJacob Faibussowitsch   PetscCheck(qNc == 1, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_SIZ, "Quadrature components %" PetscInt_FMT " > 1", qNc);
21109566063dSJacob Faibussowitsch   PetscCall(PetscMalloc6(Nc * 2, &valsum, Nc, &interpolant, cdim * Nq, &coords, Nq, &fegeom.detJ, cdim * cdim * Nq, &fegeom.J, cdim * cdim * Nq, &fegeom.invJ));
21119566063dSJacob Faibussowitsch   PetscCall(DMPlexGetDepthStratum(dm, 0, &vStart, &vEnd));
21129566063dSJacob Faibussowitsch   PetscCall(DMPlexGetSimplexOrBoxCells(dm, 0, &cStart, &cEnd));
21135f0b18bfSMatthew G. Knepley   for (v = vStart; v < vEnd; ++v) {
21145f0b18bfSMatthew G. Knepley     PetscScalar volsum = 0.0;
21155f0b18bfSMatthew G. Knepley     PetscInt   *star   = NULL;
21165f0b18bfSMatthew G. Knepley     PetscInt    starSize, st, fc;
21175f0b18bfSMatthew G. Knepley 
21189566063dSJacob Faibussowitsch     PetscCall(PetscArrayzero(valsum, Nc));
21199566063dSJacob Faibussowitsch     PetscCall(DMPlexGetTransitiveClosure(dm, v, PETSC_FALSE, &starSize, &star));
21205f0b18bfSMatthew G. Knepley     for (st = 0; st < starSize * 2; st += 2) {
21215f0b18bfSMatthew G. Knepley       const PetscInt cell = star[st];
21225f0b18bfSMatthew G. Knepley       PetscScalar   *val  = &valsum[Nc];
21235f0b18bfSMatthew G. Knepley       PetscScalar   *x    = NULL;
21245f0b18bfSMatthew G. Knepley       PetscReal      vol  = 0.0;
21255f0b18bfSMatthew G. Knepley       PetscInt       foff = 0;
21265f0b18bfSMatthew G. Knepley 
21275f0b18bfSMatthew G. Knepley       if ((cell < cStart) || (cell >= cEnd)) continue;
21289566063dSJacob Faibussowitsch       PetscCall(DMPlexComputeCellGeometryFEM(dm, cell, quad, coords, fegeom.J, fegeom.invJ, fegeom.detJ));
21299566063dSJacob Faibussowitsch       PetscCall(DMPlexVecGetClosure(dm, NULL, locX, cell, NULL, &x));
21305f0b18bfSMatthew G. Knepley       for (f = 0; f < Nf; ++f) {
21315f0b18bfSMatthew G. Knepley         PetscObject  obj;
21325f0b18bfSMatthew G. Knepley         PetscClassId id;
21335f0b18bfSMatthew G. Knepley         PetscInt     Nb, fNc, q;
21345f0b18bfSMatthew G. Knepley 
21359566063dSJacob Faibussowitsch         PetscCall(PetscArrayzero(val, Nc));
21369566063dSJacob Faibussowitsch         PetscCall(DMGetField(dm, f, NULL, &obj));
21379566063dSJacob Faibussowitsch         PetscCall(PetscObjectGetClassId(obj, &id));
21389371c9d4SSatish Balay         if (id == PETSCFE_CLASSID) {
21399371c9d4SSatish Balay           PetscCall(PetscFEGetNumComponents((PetscFE)obj, &fNc));
21409371c9d4SSatish Balay           PetscCall(PetscFEGetDimension((PetscFE)obj, &Nb));
21419371c9d4SSatish Balay         } else if (id == PETSCFV_CLASSID) {
21429371c9d4SSatish Balay           PetscCall(PetscFVGetNumComponents((PetscFV)obj, &fNc));
21439371c9d4SSatish Balay           Nb = 1;
21449371c9d4SSatish Balay         } else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, f);
21455f0b18bfSMatthew G. Knepley         for (q = 0; q < Nq; ++q) {
21465f0b18bfSMatthew G. Knepley           const PetscReal wt = quadWeights[q] * fegeom.detJ[q];
21475f0b18bfSMatthew G. Knepley           PetscFEGeom     qgeom;
21485f0b18bfSMatthew G. Knepley 
21495f0b18bfSMatthew G. Knepley           qgeom.dimEmbed = fegeom.dimEmbed;
21505f0b18bfSMatthew G. Knepley           qgeom.J        = &fegeom.J[q * cdim * cdim];
21515f0b18bfSMatthew G. Knepley           qgeom.invJ     = &fegeom.invJ[q * cdim * cdim];
21525f0b18bfSMatthew G. Knepley           qgeom.detJ     = &fegeom.detJ[q];
215363a3b9bcSJacob Faibussowitsch           PetscCheck(fegeom.detJ[q] > 0.0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Invalid determinant %g for element %" PetscInt_FMT ", quadrature points %" PetscInt_FMT, (double)fegeom.detJ[q], cell, q);
21549566063dSJacob Faibussowitsch           if (id == PETSCFE_CLASSID) PetscCall(PetscFEInterpolate_Static((PetscFE)obj, &x[foff], &qgeom, q, interpolant));
215563a3b9bcSJacob Faibussowitsch           else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, f);
21565f0b18bfSMatthew G. Knepley           for (fc = 0; fc < fNc; ++fc) val[foff + fc] += interpolant[fc] * wt;
21575f0b18bfSMatthew G. Knepley           vol += wt;
21585f0b18bfSMatthew G. Knepley         }
21595f0b18bfSMatthew G. Knepley         foff += Nb;
21605f0b18bfSMatthew G. Knepley       }
21619566063dSJacob Faibussowitsch       PetscCall(DMPlexVecRestoreClosure(dm, NULL, locX, cell, NULL, &x));
21625f0b18bfSMatthew G. Knepley       for (fc = 0; fc < Nc; ++fc) valsum[fc] += val[fc];
21635f0b18bfSMatthew G. Knepley       volsum += vol;
21645f0b18bfSMatthew G. Knepley       if (debug) {
21659566063dSJacob Faibussowitsch         PetscCall(PetscPrintf(PETSC_COMM_SELF, "Vertex %" PetscInt_FMT " Cell %" PetscInt_FMT " value: [", v, cell));
21665f0b18bfSMatthew G. Knepley         for (fc = 0; fc < Nc; ++fc) {
21679566063dSJacob Faibussowitsch           if (fc) PetscCall(PetscPrintf(PETSC_COMM_SELF, ", "));
21689566063dSJacob Faibussowitsch           PetscCall(PetscPrintf(PETSC_COMM_SELF, "%g", (double)PetscRealPart(val[fc])));
21695f0b18bfSMatthew G. Knepley         }
21709566063dSJacob Faibussowitsch         PetscCall(PetscPrintf(PETSC_COMM_SELF, "]\n"));
21715f0b18bfSMatthew G. Knepley       }
21725f0b18bfSMatthew G. Knepley     }
21735f0b18bfSMatthew G. Knepley     for (fc = 0; fc < Nc; ++fc) valsum[fc] /= volsum;
21749566063dSJacob Faibussowitsch     PetscCall(DMPlexRestoreTransitiveClosure(dm, v, PETSC_FALSE, &starSize, &star));
21759566063dSJacob Faibussowitsch     PetscCall(DMPlexVecSetClosure(dmc, NULL, locC, v, valsum, INSERT_VALUES));
21765f0b18bfSMatthew G. Knepley   }
21779566063dSJacob Faibussowitsch   PetscCall(PetscFree6(valsum, interpolant, coords, fegeom.detJ, fegeom.J, fegeom.invJ));
21783ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
21795f0b18bfSMatthew G. Knepley }
21805f0b18bfSMatthew G. Knepley 
21815f0b18bfSMatthew G. Knepley /*@
218220f4b53cSBarry Smith   DMPlexComputeGradientClementInterpolant - This function computes the L2 projection of the cellwise gradient of a function u onto P1
21831555c271SMatthew G. Knepley 
218420f4b53cSBarry Smith   Collective
2185c0f8e1fdSMatthew G. Knepley 
21861555c271SMatthew G. Knepley   Input Parameters:
2187a1cb98faSBarry Smith + dm   - The `DM`
21885f0b18bfSMatthew G. Knepley - locX - The coefficient vector u_h
21891555c271SMatthew G. Knepley 
21901555c271SMatthew G. Knepley   Output Parameter:
2191a1cb98faSBarry Smith . locC - A `Vec` which holds the Clement interpolant of the gradient
21921555c271SMatthew G. Knepley 
21931555c271SMatthew G. Knepley   Level: developer
21941555c271SMatthew G. Knepley 
2195a1cb98faSBarry Smith   Note:
2196a1cb98faSBarry Smith   $\nabla u_h(v_i) = \sum_{T_i \in support(v_i)} |T_i| \nabla u_h(T_i) / \sum_{T_i \in support(v_i)} |T_i| $ where $ |T_i| $ is the cell volume
2197a1cb98faSBarry Smith 
21981cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMProjectFunction()`, `DMComputeL2Diff()`, `DMPlexComputeL2FieldDiff()`, `DMComputeL2GradientDiff()`
21991555c271SMatthew G. Knepley @*/
2200d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeGradientClementInterpolant(DM dm, Vec locX, Vec locC)
2201d71ae5a4SJacob Faibussowitsch {
2202db1066baSMatthew G. Knepley   DM_Plex         *mesh  = (DM_Plex *)dm->data;
2203db1066baSMatthew G. Knepley   PetscInt         debug = mesh->printFEM;
22041555c271SMatthew G. Knepley   DM               dmC;
22051555c271SMatthew G. Knepley   PetscQuadrature  quad;
22061555c271SMatthew G. Knepley   PetscScalar     *interpolant, *gradsum;
22074bee2e38SMatthew G. Knepley   PetscFEGeom      fegeom;
22084bee2e38SMatthew G. Knepley   PetscReal       *coords;
22091555c271SMatthew G. Knepley   const PetscReal *quadPoints, *quadWeights;
2210485ad865SMatthew G. Knepley   PetscInt         dim, coordDim, numFields, numComponents = 0, qNc, Nq, cStart, cEnd, vStart, vEnd, v, field, fieldOffset;
22111555c271SMatthew G. Knepley 
22121555c271SMatthew G. Knepley   PetscFunctionBegin;
22139566063dSJacob Faibussowitsch   PetscCall(PetscCitationsRegister(ClementCitation, &Clementcite));
22149566063dSJacob Faibussowitsch   PetscCall(VecGetDM(locC, &dmC));
22159566063dSJacob Faibussowitsch   PetscCall(VecSet(locC, 0.0));
22169566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dm, &dim));
22179566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateDim(dm, &coordDim));
22184bee2e38SMatthew G. Knepley   fegeom.dimEmbed = coordDim;
22199566063dSJacob Faibussowitsch   PetscCall(DMGetNumFields(dm, &numFields));
22205f80ce2aSJacob Faibussowitsch   PetscCheck(numFields, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of fields is zero!");
22211555c271SMatthew G. Knepley   for (field = 0; field < numFields; ++field) {
22221555c271SMatthew G. Knepley     PetscObject  obj;
22231555c271SMatthew G. Knepley     PetscClassId id;
22241555c271SMatthew G. Knepley     PetscInt     Nc;
22251555c271SMatthew G. Knepley 
22269566063dSJacob Faibussowitsch     PetscCall(DMGetField(dm, field, NULL, &obj));
22279566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetClassId(obj, &id));
22281555c271SMatthew G. Knepley     if (id == PETSCFE_CLASSID) {
22291555c271SMatthew G. Knepley       PetscFE fe = (PetscFE)obj;
22301555c271SMatthew G. Knepley 
22319566063dSJacob Faibussowitsch       PetscCall(PetscFEGetQuadrature(fe, &quad));
22329566063dSJacob Faibussowitsch       PetscCall(PetscFEGetNumComponents(fe, &Nc));
22331555c271SMatthew G. Knepley     } else if (id == PETSCFV_CLASSID) {
22341555c271SMatthew G. Knepley       PetscFV fv = (PetscFV)obj;
22351555c271SMatthew G. Knepley 
22369566063dSJacob Faibussowitsch       PetscCall(PetscFVGetQuadrature(fv, &quad));
22379566063dSJacob Faibussowitsch       PetscCall(PetscFVGetNumComponents(fv, &Nc));
223863a3b9bcSJacob Faibussowitsch     } else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, field);
22391555c271SMatthew G. Knepley     numComponents += Nc;
22401555c271SMatthew G. Knepley   }
22419566063dSJacob Faibussowitsch   PetscCall(PetscQuadratureGetData(quad, NULL, &qNc, &Nq, &quadPoints, &quadWeights));
224263a3b9bcSJacob Faibussowitsch   PetscCheck(!(qNc != 1) || !(qNc != numComponents), PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_SIZ, "Quadrature components %" PetscInt_FMT " != %" PetscInt_FMT " field components", qNc, numComponents);
22439566063dSJacob Faibussowitsch   PetscCall(PetscMalloc6(coordDim * numComponents * 2, &gradsum, coordDim * numComponents, &interpolant, coordDim * Nq, &coords, Nq, &fegeom.detJ, coordDim * coordDim * Nq, &fegeom.J, coordDim * coordDim * Nq, &fegeom.invJ));
22449566063dSJacob Faibussowitsch   PetscCall(DMPlexGetDepthStratum(dm, 0, &vStart, &vEnd));
22459566063dSJacob Faibussowitsch   PetscCall(DMPlexGetSimplexOrBoxCells(dm, 0, &cStart, &cEnd));
22461555c271SMatthew G. Knepley   for (v = vStart; v < vEnd; ++v) {
22471555c271SMatthew G. Knepley     PetscScalar volsum = 0.0;
22481555c271SMatthew G. Knepley     PetscInt   *star   = NULL;
22491555c271SMatthew G. Knepley     PetscInt    starSize, st, d, fc;
22501555c271SMatthew G. Knepley 
22519566063dSJacob Faibussowitsch     PetscCall(PetscArrayzero(gradsum, coordDim * numComponents));
22529566063dSJacob Faibussowitsch     PetscCall(DMPlexGetTransitiveClosure(dm, v, PETSC_FALSE, &starSize, &star));
22531555c271SMatthew G. Knepley     for (st = 0; st < starSize * 2; st += 2) {
22541555c271SMatthew G. Knepley       const PetscInt cell = star[st];
22551555c271SMatthew G. Knepley       PetscScalar   *grad = &gradsum[coordDim * numComponents];
22561555c271SMatthew G. Knepley       PetscScalar   *x    = NULL;
22571555c271SMatthew G. Knepley       PetscReal      vol  = 0.0;
22581555c271SMatthew G. Knepley 
22591555c271SMatthew G. Knepley       if ((cell < cStart) || (cell >= cEnd)) continue;
22609566063dSJacob Faibussowitsch       PetscCall(DMPlexComputeCellGeometryFEM(dm, cell, quad, coords, fegeom.J, fegeom.invJ, fegeom.detJ));
22619566063dSJacob Faibussowitsch       PetscCall(DMPlexVecGetClosure(dm, NULL, locX, cell, NULL, &x));
22621555c271SMatthew G. Knepley       for (field = 0, fieldOffset = 0; field < numFields; ++field) {
22631555c271SMatthew G. Knepley         PetscObject  obj;
22641555c271SMatthew G. Knepley         PetscClassId id;
22651555c271SMatthew G. Knepley         PetscInt     Nb, Nc, q, qc = 0;
22661555c271SMatthew G. Knepley 
22679566063dSJacob Faibussowitsch         PetscCall(PetscArrayzero(grad, coordDim * numComponents));
22689566063dSJacob Faibussowitsch         PetscCall(DMGetField(dm, field, NULL, &obj));
22699566063dSJacob Faibussowitsch         PetscCall(PetscObjectGetClassId(obj, &id));
22709371c9d4SSatish Balay         if (id == PETSCFE_CLASSID) {
22719371c9d4SSatish Balay           PetscCall(PetscFEGetNumComponents((PetscFE)obj, &Nc));
22729371c9d4SSatish Balay           PetscCall(PetscFEGetDimension((PetscFE)obj, &Nb));
22739371c9d4SSatish Balay         } else if (id == PETSCFV_CLASSID) {
22749371c9d4SSatish Balay           PetscCall(PetscFVGetNumComponents((PetscFV)obj, &Nc));
22759371c9d4SSatish Balay           Nb = 1;
22769371c9d4SSatish Balay         } else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, field);
22771555c271SMatthew G. Knepley         for (q = 0; q < Nq; ++q) {
22782a4e142eSMatthew G. Knepley           PetscFEGeom qgeom;
22792a4e142eSMatthew G. Knepley 
22802a4e142eSMatthew G. Knepley           qgeom.dimEmbed = fegeom.dimEmbed;
22812a4e142eSMatthew G. Knepley           qgeom.J        = &fegeom.J[q * coordDim * coordDim];
22822a4e142eSMatthew G. Knepley           qgeom.invJ     = &fegeom.invJ[q * coordDim * coordDim];
22832a4e142eSMatthew G. Knepley           qgeom.detJ     = &fegeom.detJ[q];
228463a3b9bcSJacob Faibussowitsch           PetscCheck(fegeom.detJ[q] > 0.0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Invalid determinant %g for element %" PetscInt_FMT ", quadrature points %" PetscInt_FMT, (double)fegeom.detJ[q], cell, q);
22859566063dSJacob Faibussowitsch           if (id == PETSCFE_CLASSID) PetscCall(PetscFEInterpolateGradient_Static((PetscFE)obj, 1, &x[fieldOffset], &qgeom, q, interpolant));
228663a3b9bcSJacob Faibussowitsch           else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, field);
22871555c271SMatthew G. Knepley           for (fc = 0; fc < Nc; ++fc) {
228853d2db2dSJoe Wallwork             const PetscReal wt = quadWeights[q * qNc + qc];
22891555c271SMatthew G. Knepley 
22904bee2e38SMatthew G. Knepley             for (d = 0; d < coordDim; ++d) grad[fc * coordDim + d] += interpolant[fc * dim + d] * wt * fegeom.detJ[q];
22911555c271SMatthew G. Knepley           }
22924bee2e38SMatthew G. Knepley           vol += quadWeights[q * qNc] * fegeom.detJ[q];
22931555c271SMatthew G. Knepley         }
22941555c271SMatthew G. Knepley         fieldOffset += Nb;
22951555c271SMatthew G. Knepley         qc += Nc;
22961555c271SMatthew G. Knepley       }
22979566063dSJacob Faibussowitsch       PetscCall(DMPlexVecRestoreClosure(dm, NULL, locX, cell, NULL, &x));
2298f8527842SMatthew G. Knepley       for (fc = 0; fc < numComponents; ++fc) {
2299ad540459SPierre Jolivet         for (d = 0; d < coordDim; ++d) gradsum[fc * coordDim + d] += grad[fc * coordDim + d];
2300f8527842SMatthew G. Knepley       }
2301f8527842SMatthew G. Knepley       volsum += vol;
2302db1066baSMatthew G. Knepley       if (debug) {
23039566063dSJacob Faibussowitsch         PetscCall(PetscPrintf(PETSC_COMM_SELF, "Vertex %" PetscInt_FMT " Cell %" PetscInt_FMT " gradient: [", v, cell));
23041555c271SMatthew G. Knepley         for (fc = 0; fc < numComponents; ++fc) {
23051555c271SMatthew G. Knepley           for (d = 0; d < coordDim; ++d) {
23069566063dSJacob Faibussowitsch             if (fc || d > 0) PetscCall(PetscPrintf(PETSC_COMM_SELF, ", "));
23079566063dSJacob Faibussowitsch             PetscCall(PetscPrintf(PETSC_COMM_SELF, "%g", (double)PetscRealPart(grad[fc * coordDim + d])));
23081555c271SMatthew G. Knepley           }
23091555c271SMatthew G. Knepley         }
23109566063dSJacob Faibussowitsch         PetscCall(PetscPrintf(PETSC_COMM_SELF, "]\n"));
2311db1066baSMatthew G. Knepley       }
23121555c271SMatthew G. Knepley     }
23131555c271SMatthew G. Knepley     for (fc = 0; fc < numComponents; ++fc) {
23141555c271SMatthew G. Knepley       for (d = 0; d < coordDim; ++d) gradsum[fc * coordDim + d] /= volsum;
23151555c271SMatthew G. Knepley     }
23169566063dSJacob Faibussowitsch     PetscCall(DMPlexRestoreTransitiveClosure(dm, v, PETSC_FALSE, &starSize, &star));
23179566063dSJacob Faibussowitsch     PetscCall(DMPlexVecSetClosure(dmC, NULL, locC, v, gradsum, INSERT_VALUES));
23181555c271SMatthew G. Knepley   }
23199566063dSJacob Faibussowitsch   PetscCall(PetscFree6(gradsum, interpolant, coords, fegeom.detJ, fegeom.J, fegeom.invJ));
23203ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
23211555c271SMatthew G. Knepley }
23221555c271SMatthew G. Knepley 
23236493148fSStefano Zampini PetscErrorCode DMPlexComputeIntegral_Internal(DM dm, Vec locX, PetscInt cStart, PetscInt cEnd, PetscScalar *cintegral, void *user)
2324d71ae5a4SJacob Faibussowitsch {
2325cbf8eb3cSStefano Zampini   DM           dmAux = NULL, plexA = NULL;
232661aaff12SToby Isaac   PetscDS      prob, probAux       = NULL;
232773d901b8SMatthew G. Knepley   PetscSection section, sectionAux;
23286493148fSStefano Zampini   Vec          locA;
2329c330f8ffSToby Isaac   PetscInt     dim, numCells = cEnd - cStart, c, f;
2330c330f8ffSToby Isaac   PetscBool    useFVM = PETSC_FALSE;
2331338f77d5SMatthew G. Knepley   /* DS */
2332338f77d5SMatthew G. Knepley   PetscInt           Nf, totDim, *uOff, *uOff_x, numConstants;
2333338f77d5SMatthew G. Knepley   PetscInt           NfAux, totDimAux, *aOff;
23348e3a54c0SPierre Jolivet   PetscScalar       *u, *a = NULL;
2335338f77d5SMatthew G. Knepley   const PetscScalar *constants;
2336338f77d5SMatthew G. Knepley   /* Geometry */
2337c330f8ffSToby Isaac   PetscFEGeom       *cgeomFEM;
2338338f77d5SMatthew G. Knepley   DM                 dmGrad;
2339c330f8ffSToby Isaac   PetscQuadrature    affineQuad      = NULL;
2340338f77d5SMatthew G. Knepley   Vec                cellGeometryFVM = NULL, faceGeometryFVM = NULL, locGrad = NULL;
2341b5a3613cSMatthew G. Knepley   PetscFVCellGeom   *cgeomFVM;
2342338f77d5SMatthew G. Knepley   const PetscScalar *lgrad;
2343b7260050SToby Isaac   PetscInt           maxDegree;
2344c330f8ffSToby Isaac   DMField            coordField;
2345c330f8ffSToby Isaac   IS                 cellIS;
234673d901b8SMatthew G. Knepley 
234773d901b8SMatthew G. Knepley   PetscFunctionBegin;
23489566063dSJacob Faibussowitsch   PetscCall(DMGetDS(dm, &prob));
23499566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dm, &dim));
23509566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dm, &section));
23519566063dSJacob Faibussowitsch   PetscCall(DMGetNumFields(dm, &Nf));
2352338f77d5SMatthew G. Knepley   /* Determine which discretizations we have */
2353b5a3613cSMatthew G. Knepley   for (f = 0; f < Nf; ++f) {
2354b5a3613cSMatthew G. Knepley     PetscObject  obj;
2355b5a3613cSMatthew G. Knepley     PetscClassId id;
2356b5a3613cSMatthew G. Knepley 
23579566063dSJacob Faibussowitsch     PetscCall(PetscDSGetDiscretization(prob, f, &obj));
23589566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetClassId(obj, &id));
2359338f77d5SMatthew G. Knepley     if (id == PETSCFV_CLASSID) useFVM = PETSC_TRUE;
2360338f77d5SMatthew G. Knepley   }
2361338f77d5SMatthew G. Knepley   /* Read DS information */
23629566063dSJacob Faibussowitsch   PetscCall(PetscDSGetTotalDimension(prob, &totDim));
23639566063dSJacob Faibussowitsch   PetscCall(PetscDSGetComponentOffsets(prob, &uOff));
23649566063dSJacob Faibussowitsch   PetscCall(PetscDSGetComponentDerivativeOffsets(prob, &uOff_x));
23659566063dSJacob Faibussowitsch   PetscCall(ISCreateStride(PETSC_COMM_SELF, numCells, cStart, 1, &cellIS));
23669566063dSJacob Faibussowitsch   PetscCall(PetscDSGetConstants(prob, &numConstants, &constants));
2367338f77d5SMatthew G. Knepley   /* Read Auxiliary DS information */
23689566063dSJacob Faibussowitsch   PetscCall(DMGetAuxiliaryVec(dm, NULL, 0, 0, &locA));
23699a2a23afSMatthew G. Knepley   if (locA) {
23709566063dSJacob Faibussowitsch     PetscCall(VecGetDM(locA, &dmAux));
2371cbf8eb3cSStefano Zampini     PetscCall(DMConvert(dmAux, DMPLEX, &plexA));
23729566063dSJacob Faibussowitsch     PetscCall(DMGetDS(dmAux, &probAux));
23739566063dSJacob Faibussowitsch     PetscCall(PetscDSGetNumFields(probAux, &NfAux));
23749566063dSJacob Faibussowitsch     PetscCall(DMGetLocalSection(dmAux, &sectionAux));
23759566063dSJacob Faibussowitsch     PetscCall(PetscDSGetTotalDimension(probAux, &totDimAux));
23769566063dSJacob Faibussowitsch     PetscCall(PetscDSGetComponentOffsets(probAux, &aOff));
2377338f77d5SMatthew G. Knepley   }
2378338f77d5SMatthew G. Knepley   /* Allocate data  arrays */
23799566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(numCells * totDim, &u));
23809566063dSJacob Faibussowitsch   if (dmAux) PetscCall(PetscMalloc1(numCells * totDimAux, &a));
2381338f77d5SMatthew G. Knepley   /* Read out geometry */
23829566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateField(dm, &coordField));
23839566063dSJacob Faibussowitsch   PetscCall(DMFieldGetDegree(coordField, cellIS, NULL, &maxDegree));
2384b7260050SToby Isaac   if (maxDegree <= 1) {
23859566063dSJacob Faibussowitsch     PetscCall(DMFieldCreateDefaultQuadrature(coordField, cellIS, &affineQuad));
238648a46eb9SPierre Jolivet     if (affineQuad) PetscCall(DMFieldCreateFEGeom(coordField, cellIS, affineQuad, PETSC_FALSE, &cgeomFEM));
2387b5a3613cSMatthew G. Knepley   }
2388b5a3613cSMatthew G. Knepley   if (useFVM) {
2389338f77d5SMatthew G. Knepley     PetscFV   fv = NULL;
2390b5a3613cSMatthew G. Knepley     Vec       grad;
2391b5a3613cSMatthew G. Knepley     PetscInt  fStart, fEnd;
2392b5a3613cSMatthew G. Knepley     PetscBool compGrad;
2393b5a3613cSMatthew G. Knepley 
2394338f77d5SMatthew G. Knepley     for (f = 0; f < Nf; ++f) {
2395338f77d5SMatthew G. Knepley       PetscObject  obj;
2396338f77d5SMatthew G. Knepley       PetscClassId id;
2397338f77d5SMatthew G. Knepley 
23989566063dSJacob Faibussowitsch       PetscCall(PetscDSGetDiscretization(prob, f, &obj));
23999566063dSJacob Faibussowitsch       PetscCall(PetscObjectGetClassId(obj, &id));
24009371c9d4SSatish Balay       if (id == PETSCFV_CLASSID) {
24019371c9d4SSatish Balay         fv = (PetscFV)obj;
24029371c9d4SSatish Balay         break;
24039371c9d4SSatish Balay       }
2404338f77d5SMatthew G. Knepley     }
24059566063dSJacob Faibussowitsch     PetscCall(PetscFVGetComputeGradients(fv, &compGrad));
24069566063dSJacob Faibussowitsch     PetscCall(PetscFVSetComputeGradients(fv, PETSC_TRUE));
24079566063dSJacob Faibussowitsch     PetscCall(DMPlexComputeGeometryFVM(dm, &cellGeometryFVM, &faceGeometryFVM));
24089566063dSJacob Faibussowitsch     PetscCall(DMPlexComputeGradientFVM(dm, fv, faceGeometryFVM, cellGeometryFVM, &dmGrad));
24099566063dSJacob Faibussowitsch     PetscCall(PetscFVSetComputeGradients(fv, compGrad));
24109566063dSJacob Faibussowitsch     PetscCall(VecGetArrayRead(cellGeometryFVM, (const PetscScalar **)&cgeomFVM));
2411b5a3613cSMatthew G. Knepley     /* Reconstruct and limit cell gradients */
24129566063dSJacob Faibussowitsch     PetscCall(DMPlexGetHeightStratum(dm, 1, &fStart, &fEnd));
24139566063dSJacob Faibussowitsch     PetscCall(DMGetGlobalVector(dmGrad, &grad));
24149566063dSJacob Faibussowitsch     PetscCall(DMPlexReconstructGradients_Internal(dm, fv, fStart, fEnd, faceGeometryFVM, cellGeometryFVM, locX, grad));
2415b5a3613cSMatthew G. Knepley     /* Communicate gradient values */
24169566063dSJacob Faibussowitsch     PetscCall(DMGetLocalVector(dmGrad, &locGrad));
24179566063dSJacob Faibussowitsch     PetscCall(DMGlobalToLocalBegin(dmGrad, grad, INSERT_VALUES, locGrad));
24189566063dSJacob Faibussowitsch     PetscCall(DMGlobalToLocalEnd(dmGrad, grad, INSERT_VALUES, locGrad));
24199566063dSJacob Faibussowitsch     PetscCall(DMRestoreGlobalVector(dmGrad, &grad));
2420b5a3613cSMatthew G. Knepley     /* Handle non-essential (e.g. outflow) boundary values */
24219566063dSJacob Faibussowitsch     PetscCall(DMPlexInsertBoundaryValues(dm, PETSC_FALSE, locX, 0.0, faceGeometryFVM, cellGeometryFVM, locGrad));
24229566063dSJacob Faibussowitsch     PetscCall(VecGetArrayRead(locGrad, &lgrad));
2423b5a3613cSMatthew G. Knepley   }
2424338f77d5SMatthew G. Knepley   /* Read out data from inputs */
242573d901b8SMatthew G. Knepley   for (c = cStart; c < cEnd; ++c) {
242673d901b8SMatthew G. Knepley     PetscScalar *x = NULL;
242773d901b8SMatthew G. Knepley     PetscInt     i;
242873d901b8SMatthew G. Knepley 
24299566063dSJacob Faibussowitsch     PetscCall(DMPlexVecGetClosure(dm, section, locX, c, NULL, &x));
24300f2d7e86SMatthew G. Knepley     for (i = 0; i < totDim; ++i) u[c * totDim + i] = x[i];
24319566063dSJacob Faibussowitsch     PetscCall(DMPlexVecRestoreClosure(dm, section, locX, c, NULL, &x));
243273d901b8SMatthew G. Knepley     if (dmAux) {
2433cbf8eb3cSStefano Zampini       PetscCall(DMPlexVecGetClosure(plexA, sectionAux, locA, c, NULL, &x));
24340f2d7e86SMatthew G. Knepley       for (i = 0; i < totDimAux; ++i) a[c * totDimAux + i] = x[i];
2435cbf8eb3cSStefano Zampini       PetscCall(DMPlexVecRestoreClosure(plexA, sectionAux, locA, c, NULL, &x));
243673d901b8SMatthew G. Knepley     }
243773d901b8SMatthew G. Knepley   }
2438338f77d5SMatthew G. Knepley   /* Do integration for each field */
243973d901b8SMatthew G. Knepley   for (f = 0; f < Nf; ++f) {
2440c1f031eeSMatthew G. Knepley     PetscObject  obj;
2441c1f031eeSMatthew G. Knepley     PetscClassId id;
2442c1f031eeSMatthew G. Knepley     PetscInt     numChunks, numBatches, batchSize, numBlocks, blockSize, Ne, Nr, offset;
244373d901b8SMatthew G. Knepley 
24449566063dSJacob Faibussowitsch     PetscCall(PetscDSGetDiscretization(prob, f, &obj));
24459566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetClassId(obj, &id));
2446c1f031eeSMatthew G. Knepley     if (id == PETSCFE_CLASSID) {
2447c1f031eeSMatthew G. Knepley       PetscFE         fe = (PetscFE)obj;
2448c1f031eeSMatthew G. Knepley       PetscQuadrature q;
2449c330f8ffSToby Isaac       PetscFEGeom    *chunkGeom = NULL;
2450c1f031eeSMatthew G. Knepley       PetscInt        Nq, Nb;
2451c1f031eeSMatthew G. Knepley 
24529566063dSJacob Faibussowitsch       PetscCall(PetscFEGetTileSizes(fe, NULL, &numBlocks, NULL, &numBatches));
24539566063dSJacob Faibussowitsch       PetscCall(PetscFEGetQuadrature(fe, &q));
24549566063dSJacob Faibussowitsch       PetscCall(PetscQuadratureGetData(q, NULL, NULL, &Nq, NULL, NULL));
24559566063dSJacob Faibussowitsch       PetscCall(PetscFEGetDimension(fe, &Nb));
2456c1f031eeSMatthew G. Knepley       blockSize = Nb * Nq;
245773d901b8SMatthew G. Knepley       batchSize = numBlocks * blockSize;
24589566063dSJacob Faibussowitsch       PetscCall(PetscFESetTileSizes(fe, blockSize, numBlocks, batchSize, numBatches));
245973d901b8SMatthew G. Knepley       numChunks = numCells / (numBatches * batchSize);
246073d901b8SMatthew G. Knepley       Ne        = numChunks * numBatches * batchSize;
246173d901b8SMatthew G. Knepley       Nr        = numCells % (numBatches * batchSize);
246273d901b8SMatthew G. Knepley       offset    = numCells - Nr;
246348a46eb9SPierre Jolivet       if (!affineQuad) PetscCall(DMFieldCreateFEGeom(coordField, cellIS, q, PETSC_FALSE, &cgeomFEM));
24649566063dSJacob Faibussowitsch       PetscCall(PetscFEGeomGetChunk(cgeomFEM, 0, offset, &chunkGeom));
24659566063dSJacob Faibussowitsch       PetscCall(PetscFEIntegrate(prob, f, Ne, chunkGeom, u, probAux, a, cintegral));
24669566063dSJacob Faibussowitsch       PetscCall(PetscFEGeomGetChunk(cgeomFEM, offset, numCells, &chunkGeom));
24678e3a54c0SPierre Jolivet       PetscCall(PetscFEIntegrate(prob, f, Nr, chunkGeom, &u[offset * totDim], probAux, PetscSafePointerPlusOffset(a, offset * totDimAux), &cintegral[offset * Nf]));
24689566063dSJacob Faibussowitsch       PetscCall(PetscFEGeomRestoreChunk(cgeomFEM, offset, numCells, &chunkGeom));
246948a46eb9SPierre Jolivet       if (!affineQuad) PetscCall(PetscFEGeomDestroy(&cgeomFEM));
2470c1f031eeSMatthew G. Knepley     } else if (id == PETSCFV_CLASSID) {
2471c1f031eeSMatthew G. Knepley       PetscInt       foff;
2472420e96edSMatthew G. Knepley       PetscPointFunc obj_func;
2473c1f031eeSMatthew G. Knepley 
24749566063dSJacob Faibussowitsch       PetscCall(PetscDSGetObjective(prob, f, &obj_func));
24759566063dSJacob Faibussowitsch       PetscCall(PetscDSGetFieldOffset(prob, f, &foff));
2476c1f031eeSMatthew G. Knepley       if (obj_func) {
2477c1f031eeSMatthew G. Knepley         for (c = 0; c < numCells; ++c) {
2478b5a3613cSMatthew G. Knepley           PetscScalar *u_x;
2479d627b919SMatthew G. Knepley           PetscScalar  lint = 0.;
2480b5a3613cSMatthew G. Knepley 
24819566063dSJacob Faibussowitsch           PetscCall(DMPlexPointLocalRead(dmGrad, c, lgrad, &u_x));
248255bffe1bSPierre Jolivet           obj_func(dim, Nf, NfAux, uOff, uOff_x, &u[totDim * c + foff], NULL, u_x, aOff, NULL, PetscSafePointerPlusOffset(a, totDimAux * c), NULL, NULL, 0.0, cgeomFVM[c].centroid, numConstants, constants, &lint);
2483338f77d5SMatthew G. Knepley           cintegral[c * Nf + f] += PetscRealPart(lint) * cgeomFVM[c].volume;
248473d901b8SMatthew G. Knepley         }
2485c1f031eeSMatthew G. Knepley       }
248663a3b9bcSJacob Faibussowitsch     } else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, f);
2487c1f031eeSMatthew G. Knepley   }
2488338f77d5SMatthew G. Knepley   /* Cleanup data arrays */
2489b5a3613cSMatthew G. Knepley   if (useFVM) {
24909566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayRead(locGrad, &lgrad));
24919566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayRead(cellGeometryFVM, (const PetscScalar **)&cgeomFVM));
24929566063dSJacob Faibussowitsch     PetscCall(DMRestoreLocalVector(dmGrad, &locGrad));
24939566063dSJacob Faibussowitsch     PetscCall(VecDestroy(&faceGeometryFVM));
24949566063dSJacob Faibussowitsch     PetscCall(VecDestroy(&cellGeometryFVM));
24959566063dSJacob Faibussowitsch     PetscCall(DMDestroy(&dmGrad));
2496b5a3613cSMatthew G. Knepley   }
24979566063dSJacob Faibussowitsch   if (dmAux) PetscCall(PetscFree(a));
2498cbf8eb3cSStefano Zampini   PetscCall(DMDestroy(&plexA));
24999566063dSJacob Faibussowitsch   PetscCall(PetscFree(u));
2500338f77d5SMatthew G. Knepley   /* Cleanup */
250148a46eb9SPierre Jolivet   if (affineQuad) PetscCall(PetscFEGeomDestroy(&cgeomFEM));
25029566063dSJacob Faibussowitsch   PetscCall(PetscQuadratureDestroy(&affineQuad));
25039566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&cellIS));
25043ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2505338f77d5SMatthew G. Knepley }
2506338f77d5SMatthew G. Knepley 
2507338f77d5SMatthew G. Knepley /*@
2508338f77d5SMatthew G. Knepley   DMPlexComputeIntegralFEM - Form the integral over the domain from the global input X using pointwise functions specified by the user
2509338f77d5SMatthew G. Knepley 
2510338f77d5SMatthew G. Knepley   Input Parameters:
2511338f77d5SMatthew G. Knepley + dm   - The mesh
2512338f77d5SMatthew G. Knepley . X    - Global input vector
2513338f77d5SMatthew G. Knepley - user - The user context
2514338f77d5SMatthew G. Knepley 
2515338f77d5SMatthew G. Knepley   Output Parameter:
2516338f77d5SMatthew G. Knepley . integral - Integral for each field
2517338f77d5SMatthew G. Knepley 
2518338f77d5SMatthew G. Knepley   Level: developer
2519338f77d5SMatthew G. Knepley 
25201cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexSNESComputeResidualFEM()`
2521338f77d5SMatthew G. Knepley @*/
2522d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeIntegralFEM(DM dm, Vec X, PetscScalar *integral, void *user)
2523d71ae5a4SJacob Faibussowitsch {
2524cbf8eb3cSStefano Zampini   PetscInt     printFEM;
2525b8feb594SMatthew G. Knepley   PetscScalar *cintegral, *lintegral;
2526412e9a14SMatthew G. Knepley   PetscInt     Nf, f, cellHeight, cStart, cEnd, cell;
25276493148fSStefano Zampini   Vec          locX;
2528338f77d5SMatthew G. Knepley 
2529338f77d5SMatthew G. Knepley   PetscFunctionBegin;
2530338f77d5SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
2531338f77d5SMatthew G. Knepley   PetscValidHeaderSpecific(X, VEC_CLASSID, 2);
25324f572ea9SToby Isaac   PetscAssertPointer(integral, 3);
25339566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(DMPLEX_IntegralFEM, dm, 0, 0, 0));
2534cbf8eb3cSStefano Zampini   PetscCall(DMPlexConvertPlex(dm, &dm, PETSC_TRUE));
25359566063dSJacob Faibussowitsch   PetscCall(DMGetNumFields(dm, &Nf));
25369566063dSJacob Faibussowitsch   PetscCall(DMPlexGetVTKCellHeight(dm, &cellHeight));
25379566063dSJacob Faibussowitsch   PetscCall(DMPlexGetSimplexOrBoxCells(dm, cellHeight, &cStart, &cEnd));
2538338f77d5SMatthew G. Knepley   /* TODO Introduce a loop over large chunks (right now this is a single chunk) */
25399566063dSJacob Faibussowitsch   PetscCall(PetscCalloc2(Nf, &lintegral, (cEnd - cStart) * Nf, &cintegral));
25406493148fSStefano Zampini   /* Get local solution with boundary values */
25416493148fSStefano Zampini   PetscCall(DMGetLocalVector(dm, &locX));
25426493148fSStefano Zampini   PetscCall(DMPlexInsertBoundaryValues(dm, PETSC_TRUE, locX, 0.0, NULL, NULL, NULL));
25436493148fSStefano Zampini   PetscCall(DMGlobalToLocalBegin(dm, X, INSERT_VALUES, locX));
25446493148fSStefano Zampini   PetscCall(DMGlobalToLocalEnd(dm, X, INSERT_VALUES, locX));
25456493148fSStefano Zampini   PetscCall(DMPlexComputeIntegral_Internal(dm, locX, cStart, cEnd, cintegral, user));
25466493148fSStefano Zampini   PetscCall(DMRestoreLocalVector(dm, &locX));
2547cbf8eb3cSStefano Zampini   printFEM = ((DM_Plex *)dm->data)->printFEM;
2548338f77d5SMatthew G. Knepley   /* Sum up values */
2549338f77d5SMatthew G. Knepley   for (cell = cStart; cell < cEnd; ++cell) {
2550338f77d5SMatthew G. Knepley     const PetscInt c = cell - cStart;
2551338f77d5SMatthew G. Knepley 
2552cbf8eb3cSStefano Zampini     if (printFEM > 1) PetscCall(DMPrintCellVector(cell, "Cell Integral", Nf, &cintegral[c * Nf]));
2553b8feb594SMatthew G. Knepley     for (f = 0; f < Nf; ++f) lintegral[f] += cintegral[c * Nf + f];
2554338f77d5SMatthew G. Knepley   }
2555*e91c04dfSPierre Jolivet   PetscCallMPI(MPIU_Allreduce(lintegral, integral, Nf, MPIU_SCALAR, MPIU_SUM, PetscObjectComm((PetscObject)dm)));
2556cbf8eb3cSStefano Zampini   if (printFEM) {
25579566063dSJacob Faibussowitsch     PetscCall(PetscPrintf(PetscObjectComm((PetscObject)dm), "Integral:"));
25589566063dSJacob Faibussowitsch     for (f = 0; f < Nf; ++f) PetscCall(PetscPrintf(PetscObjectComm((PetscObject)dm), " %g", (double)PetscRealPart(integral[f])));
25599566063dSJacob Faibussowitsch     PetscCall(PetscPrintf(PetscObjectComm((PetscObject)dm), "\n"));
256073d901b8SMatthew G. Knepley   }
25619566063dSJacob Faibussowitsch   PetscCall(PetscFree2(lintegral, cintegral));
25629566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(DMPLEX_IntegralFEM, dm, 0, 0, 0));
2563cbf8eb3cSStefano Zampini   PetscCall(DMDestroy(&dm));
25643ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2565338f77d5SMatthew G. Knepley }
2566338f77d5SMatthew G. Knepley 
2567338f77d5SMatthew G. Knepley /*@
2568338f77d5SMatthew G. Knepley   DMPlexComputeCellwiseIntegralFEM - Form the vector of cellwise integrals F from the global input X using pointwise functions specified by the user
2569338f77d5SMatthew G. Knepley 
2570338f77d5SMatthew G. Knepley   Input Parameters:
2571338f77d5SMatthew G. Knepley + dm   - The mesh
2572338f77d5SMatthew G. Knepley . X    - Global input vector
2573338f77d5SMatthew G. Knepley - user - The user context
2574338f77d5SMatthew G. Knepley 
2575338f77d5SMatthew G. Knepley   Output Parameter:
257660225df5SJacob Faibussowitsch . F - Cellwise integrals for each field
2577338f77d5SMatthew G. Knepley 
2578338f77d5SMatthew G. Knepley   Level: developer
2579338f77d5SMatthew G. Knepley 
25801cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexSNESComputeResidualFEM()`
2581338f77d5SMatthew G. Knepley @*/
2582d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeCellwiseIntegralFEM(DM dm, Vec X, Vec F, void *user)
2583d71ae5a4SJacob Faibussowitsch {
2584cbf8eb3cSStefano Zampini   PetscInt     printFEM;
2585338f77d5SMatthew G. Knepley   DM           dmF;
25869c8ab049SStefano Zampini   PetscSection sectionF = NULL;
2587338f77d5SMatthew G. Knepley   PetscScalar *cintegral, *af;
25889c8ab049SStefano Zampini   PetscInt     Nf, f, cellHeight, cStart, cEnd, cell, n;
25896493148fSStefano Zampini   Vec          locX;
2590338f77d5SMatthew G. Knepley 
2591338f77d5SMatthew G. Knepley   PetscFunctionBegin;
2592338f77d5SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
2593338f77d5SMatthew G. Knepley   PetscValidHeaderSpecific(X, VEC_CLASSID, 2);
2594338f77d5SMatthew G. Knepley   PetscValidHeaderSpecific(F, VEC_CLASSID, 3);
25959566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(DMPLEX_IntegralFEM, dm, 0, 0, 0));
2596cbf8eb3cSStefano Zampini   PetscCall(DMPlexConvertPlex(dm, &dm, PETSC_TRUE));
25979566063dSJacob Faibussowitsch   PetscCall(DMGetNumFields(dm, &Nf));
25989566063dSJacob Faibussowitsch   PetscCall(DMPlexGetVTKCellHeight(dm, &cellHeight));
25999566063dSJacob Faibussowitsch   PetscCall(DMPlexGetSimplexOrBoxCells(dm, cellHeight, &cStart, &cEnd));
2600338f77d5SMatthew G. Knepley   /* TODO Introduce a loop over large chunks (right now this is a single chunk) */
26019566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1((cEnd - cStart) * Nf, &cintegral));
26026493148fSStefano Zampini   /* Get local solution with boundary values */
26036493148fSStefano Zampini   PetscCall(DMGetLocalVector(dm, &locX));
26046493148fSStefano Zampini   PetscCall(DMPlexInsertBoundaryValues(dm, PETSC_TRUE, locX, 0.0, NULL, NULL, NULL));
26056493148fSStefano Zampini   PetscCall(DMGlobalToLocalBegin(dm, X, INSERT_VALUES, locX));
26066493148fSStefano Zampini   PetscCall(DMGlobalToLocalEnd(dm, X, INSERT_VALUES, locX));
26076493148fSStefano Zampini   PetscCall(DMPlexComputeIntegral_Internal(dm, locX, cStart, cEnd, cintegral, user));
26086493148fSStefano Zampini   PetscCall(DMRestoreLocalVector(dm, &locX));
2609338f77d5SMatthew G. Knepley   /* Put values in F */
26109566063dSJacob Faibussowitsch   PetscCall(VecGetArray(F, &af));
26119c8ab049SStefano Zampini   PetscCall(VecGetDM(F, &dmF));
26129c8ab049SStefano Zampini   if (dmF) PetscCall(DMGetLocalSection(dmF, &sectionF));
26139c8ab049SStefano Zampini   PetscCall(VecGetLocalSize(F, &n));
26149c8ab049SStefano Zampini   PetscCheck(n >= (cEnd - cStart) * Nf, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Vector size %" PetscInt_FMT " < %" PetscInt_FMT, n, (cEnd - cStart) * Nf);
2615cbf8eb3cSStefano Zampini   printFEM = ((DM_Plex *)dm->data)->printFEM;
2616338f77d5SMatthew G. Knepley   for (cell = cStart; cell < cEnd; ++cell) {
2617338f77d5SMatthew G. Knepley     const PetscInt c   = cell - cStart;
26189c8ab049SStefano Zampini     PetscInt       dof = Nf, off = c * Nf;
2619338f77d5SMatthew G. Knepley 
2620cbf8eb3cSStefano Zampini     if (printFEM > 1) PetscCall(DMPrintCellVector(cell, "Cell Integral", Nf, &cintegral[c * Nf]));
26219c8ab049SStefano Zampini     if (sectionF) {
26229566063dSJacob Faibussowitsch       PetscCall(PetscSectionGetDof(sectionF, cell, &dof));
26239566063dSJacob Faibussowitsch       PetscCall(PetscSectionGetOffset(sectionF, cell, &off));
26249c8ab049SStefano Zampini     }
262563a3b9bcSJacob Faibussowitsch     PetscCheck(dof == Nf, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "The number of cell dofs %" PetscInt_FMT " != %" PetscInt_FMT, dof, Nf);
2626338f77d5SMatthew G. Knepley     for (f = 0; f < Nf; ++f) af[off + f] = cintegral[c * Nf + f];
2627338f77d5SMatthew G. Knepley   }
26289566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(F, &af));
26299566063dSJacob Faibussowitsch   PetscCall(PetscFree(cintegral));
26309566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(DMPLEX_IntegralFEM, dm, 0, 0, 0));
2631cbf8eb3cSStefano Zampini   PetscCall(DMDestroy(&dm));
26323ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
263373d901b8SMatthew G. Knepley }
263473d901b8SMatthew G. Knepley 
263579ab67a3SMatthew G. Knepley static PetscErrorCode DMPlexComputeBdIntegral_Internal(DM dm, Vec locX, IS pointIS, void (**funcs)(PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], PetscReal, const PetscReal[], const PetscReal[], PetscInt, const PetscScalar[], PetscScalar[]), PetscScalar *fintegral, void *user)
2636d71ae5a4SJacob Faibussowitsch {
26379b6f715bSMatthew G. Knepley   DM                 plex = NULL, plexA = NULL;
2638a6e0b375SMatthew G. Knepley   DMEnclosureType    encAux;
26399b6f715bSMatthew G. Knepley   PetscDS            prob, probAux       = NULL;
26409b6f715bSMatthew G. Knepley   PetscSection       section, sectionAux = NULL;
26419b6f715bSMatthew G. Knepley   Vec                locA = NULL;
26429b6f715bSMatthew G. Knepley   DMField            coordField;
26439b6f715bSMatthew G. Knepley   PetscInt           Nf, totDim, *uOff, *uOff_x;
26449b6f715bSMatthew G. Knepley   PetscInt           NfAux = 0, totDimAux = 0, *aOff = NULL;
26459b6f715bSMatthew G. Knepley   PetscScalar       *u, *a = NULL;
264664c72086SMatthew G. Knepley   const PetscScalar *constants;
26479b6f715bSMatthew G. Knepley   PetscInt           numConstants, f;
264864c72086SMatthew G. Knepley 
264964c72086SMatthew G. Knepley   PetscFunctionBegin;
26509566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateField(dm, &coordField));
26519566063dSJacob Faibussowitsch   PetscCall(DMConvert(dm, DMPLEX, &plex));
26529566063dSJacob Faibussowitsch   PetscCall(DMGetDS(dm, &prob));
26539566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dm, &section));
26549566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetNumFields(section, &Nf));
265564c72086SMatthew G. Knepley   /* Determine which discretizations we have */
26569b6f715bSMatthew G. Knepley   for (f = 0; f < Nf; ++f) {
265764c72086SMatthew G. Knepley     PetscObject  obj;
265864c72086SMatthew G. Knepley     PetscClassId id;
265964c72086SMatthew G. Knepley 
26609566063dSJacob Faibussowitsch     PetscCall(PetscDSGetDiscretization(prob, f, &obj));
26619566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetClassId(obj, &id));
266263a3b9bcSJacob Faibussowitsch     PetscCheck(id != PETSCFV_CLASSID, PetscObjectComm((PetscObject)dm), PETSC_ERR_SUP, "Not supported for FVM (field %" PetscInt_FMT ")", f);
266364c72086SMatthew G. Knepley   }
266464c72086SMatthew G. Knepley   /* Read DS information */
26659566063dSJacob Faibussowitsch   PetscCall(PetscDSGetTotalDimension(prob, &totDim));
26669566063dSJacob Faibussowitsch   PetscCall(PetscDSGetComponentOffsets(prob, &uOff));
26679566063dSJacob Faibussowitsch   PetscCall(PetscDSGetComponentDerivativeOffsets(prob, &uOff_x));
26689566063dSJacob Faibussowitsch   PetscCall(PetscDSGetConstants(prob, &numConstants, &constants));
266964c72086SMatthew G. Knepley   /* Read Auxiliary DS information */
26709566063dSJacob Faibussowitsch   PetscCall(DMGetAuxiliaryVec(dm, NULL, 0, 0, &locA));
26719b6f715bSMatthew G. Knepley   if (locA) {
26729b6f715bSMatthew G. Knepley     DM dmAux;
26739b6f715bSMatthew G. Knepley 
26749566063dSJacob Faibussowitsch     PetscCall(VecGetDM(locA, &dmAux));
26759566063dSJacob Faibussowitsch     PetscCall(DMGetEnclosureRelation(dmAux, dm, &encAux));
26769566063dSJacob Faibussowitsch     PetscCall(DMConvert(dmAux, DMPLEX, &plexA));
26779566063dSJacob Faibussowitsch     PetscCall(DMGetDS(dmAux, &probAux));
26789566063dSJacob Faibussowitsch     PetscCall(PetscDSGetNumFields(probAux, &NfAux));
26799566063dSJacob Faibussowitsch     PetscCall(DMGetLocalSection(dmAux, &sectionAux));
26809566063dSJacob Faibussowitsch     PetscCall(PetscDSGetTotalDimension(probAux, &totDimAux));
26819566063dSJacob Faibussowitsch     PetscCall(PetscDSGetComponentOffsets(probAux, &aOff));
268264c72086SMatthew G. Knepley   }
26839b6f715bSMatthew G. Knepley   /* Integrate over points */
26849b6f715bSMatthew G. Knepley   {
26859b6f715bSMatthew G. Knepley     PetscFEGeom    *fgeom, *chunkGeom = NULL;
2686b7260050SToby Isaac     PetscInt        maxDegree;
26879b6f715bSMatthew G. Knepley     PetscQuadrature qGeom = NULL;
26889b6f715bSMatthew G. Knepley     const PetscInt *points;
26899b6f715bSMatthew G. Knepley     PetscInt        numFaces, face, Nq, field;
26909b6f715bSMatthew G. Knepley     PetscInt        numChunks, chunkSize, chunk, Nr, offset;
269164c72086SMatthew G. Knepley 
26929566063dSJacob Faibussowitsch     PetscCall(ISGetLocalSize(pointIS, &numFaces));
26939566063dSJacob Faibussowitsch     PetscCall(ISGetIndices(pointIS, &points));
269432603206SJames Wright     PetscCall(PetscCalloc2(numFaces * totDim, &u, (locA ? (size_t)numFaces * totDimAux : 0), &a));
26959566063dSJacob Faibussowitsch     PetscCall(DMFieldGetDegree(coordField, pointIS, NULL, &maxDegree));
269679ab67a3SMatthew G. Knepley     for (face = 0; face < numFaces; ++face) {
269779ab67a3SMatthew G. Knepley       const PetscInt point = points[face], *support;
269879ab67a3SMatthew G. Knepley       PetscScalar   *x     = NULL;
269979ab67a3SMatthew G. Knepley 
270079ab67a3SMatthew G. Knepley       PetscCall(DMPlexGetSupport(dm, point, &support));
270179ab67a3SMatthew G. Knepley       PetscCall(DMPlexVecGetClosure(plex, section, locX, support[0], NULL, &x));
270279ab67a3SMatthew G. Knepley       for (PetscInt i = 0; i < totDim; ++i) u[face * totDim + i] = x[i];
270379ab67a3SMatthew G. Knepley       PetscCall(DMPlexVecRestoreClosure(plex, section, locX, support[0], NULL, &x));
270479ab67a3SMatthew G. Knepley       if (locA) {
270579ab67a3SMatthew G. Knepley         PetscInt subp;
270679ab67a3SMatthew G. Knepley         PetscCall(DMGetEnclosurePoint(plexA, dm, encAux, support[0], &subp));
270779ab67a3SMatthew G. Knepley         PetscCall(DMPlexVecGetClosure(plexA, sectionAux, locA, subp, NULL, &x));
270879ab67a3SMatthew G. Knepley         for (PetscInt i = 0; i < totDimAux; ++i) a[f * totDimAux + i] = x[i];
270979ab67a3SMatthew G. Knepley         PetscCall(DMPlexVecRestoreClosure(plexA, sectionAux, locA, subp, NULL, &x));
271079ab67a3SMatthew G. Knepley       }
271179ab67a3SMatthew G. Knepley     }
271264c72086SMatthew G. Knepley     for (field = 0; field < Nf; ++field) {
271364c72086SMatthew G. Knepley       PetscFE fe;
271464c72086SMatthew G. Knepley 
27159566063dSJacob Faibussowitsch       PetscCall(PetscDSGetDiscretization(prob, field, (PetscObject *)&fe));
27169566063dSJacob Faibussowitsch       if (maxDegree <= 1) PetscCall(DMFieldCreateDefaultQuadrature(coordField, pointIS, &qGeom));
27179b6f715bSMatthew G. Knepley       if (!qGeom) {
27189566063dSJacob Faibussowitsch         PetscCall(PetscFEGetFaceQuadrature(fe, &qGeom));
27199566063dSJacob Faibussowitsch         PetscCall(PetscObjectReference((PetscObject)qGeom));
27209b6f715bSMatthew G. Knepley       }
27219566063dSJacob Faibussowitsch       PetscCall(PetscQuadratureGetData(qGeom, NULL, NULL, &Nq, NULL, NULL));
27229566063dSJacob Faibussowitsch       PetscCall(DMPlexGetFEGeom(coordField, pointIS, qGeom, PETSC_TRUE, &fgeom));
27239b6f715bSMatthew G. Knepley       /* Get blocking */
27249b6f715bSMatthew G. Knepley       {
27259b6f715bSMatthew G. Knepley         PetscQuadrature q;
27269b6f715bSMatthew G. Knepley         PetscInt        numBatches, batchSize, numBlocks, blockSize;
27279b6f715bSMatthew G. Knepley         PetscInt        Nq, Nb;
27289b6f715bSMatthew G. Knepley 
27299566063dSJacob Faibussowitsch         PetscCall(PetscFEGetTileSizes(fe, NULL, &numBlocks, NULL, &numBatches));
27309566063dSJacob Faibussowitsch         PetscCall(PetscFEGetQuadrature(fe, &q));
27319566063dSJacob Faibussowitsch         PetscCall(PetscQuadratureGetData(q, NULL, NULL, &Nq, NULL, NULL));
27329566063dSJacob Faibussowitsch         PetscCall(PetscFEGetDimension(fe, &Nb));
273364c72086SMatthew G. Knepley         blockSize = Nb * Nq;
273464c72086SMatthew G. Knepley         batchSize = numBlocks * blockSize;
27359b6f715bSMatthew G. Knepley         chunkSize = numBatches * batchSize;
27369566063dSJacob Faibussowitsch         PetscCall(PetscFESetTileSizes(fe, blockSize, numBlocks, batchSize, numBatches));
27379b6f715bSMatthew G. Knepley         numChunks = numFaces / chunkSize;
27389b6f715bSMatthew G. Knepley         Nr        = numFaces % chunkSize;
273964c72086SMatthew G. Knepley         offset    = numFaces - Nr;
274064c72086SMatthew G. Knepley       }
27419b6f715bSMatthew G. Knepley       /* Do integration for each field */
27429b6f715bSMatthew G. Knepley       for (chunk = 0; chunk < numChunks; ++chunk) {
27439566063dSJacob Faibussowitsch         PetscCall(PetscFEGeomGetChunk(fgeom, chunk * chunkSize, (chunk + 1) * chunkSize, &chunkGeom));
274479ab67a3SMatthew G. Knepley         PetscCall(PetscFEIntegrateBd(prob, field, funcs[field], chunkSize, chunkGeom, &u[chunk * chunkSize * totDim], probAux, PetscSafePointerPlusOffset(a, chunk * chunkSize * totDimAux), &fintegral[chunk * chunkSize * Nf]));
27459566063dSJacob Faibussowitsch         PetscCall(PetscFEGeomRestoreChunk(fgeom, 0, offset, &chunkGeom));
274664c72086SMatthew G. Knepley       }
27479566063dSJacob Faibussowitsch       PetscCall(PetscFEGeomGetChunk(fgeom, offset, numFaces, &chunkGeom));
274879ab67a3SMatthew G. Knepley       PetscCall(PetscFEIntegrateBd(prob, field, funcs[field], Nr, chunkGeom, &u[offset * totDim], probAux, PetscSafePointerPlusOffset(a, offset * totDimAux), &fintegral[offset * Nf]));
27499566063dSJacob Faibussowitsch       PetscCall(PetscFEGeomRestoreChunk(fgeom, offset, numFaces, &chunkGeom));
275064c72086SMatthew G. Knepley       /* Cleanup data arrays */
27519566063dSJacob Faibussowitsch       PetscCall(DMPlexRestoreFEGeom(coordField, pointIS, qGeom, PETSC_TRUE, &fgeom));
27529566063dSJacob Faibussowitsch       PetscCall(PetscQuadratureDestroy(&qGeom));
275379ab67a3SMatthew G. Knepley     }
27549566063dSJacob Faibussowitsch     PetscCall(PetscFree2(u, a));
27559566063dSJacob Faibussowitsch     PetscCall(ISRestoreIndices(pointIS, &points));
275664c72086SMatthew G. Knepley   }
27579566063dSJacob Faibussowitsch   if (plex) PetscCall(DMDestroy(&plex));
27589566063dSJacob Faibussowitsch   if (plexA) PetscCall(DMDestroy(&plexA));
27593ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
27609b6f715bSMatthew G. Knepley }
27619b6f715bSMatthew G. Knepley 
276260225df5SJacob Faibussowitsch /*@C
27639b6f715bSMatthew G. Knepley   DMPlexComputeBdIntegral - Form the integral over the specified boundary from the global input X using pointwise functions specified by the user
27649b6f715bSMatthew G. Knepley 
27659b6f715bSMatthew G. Knepley   Input Parameters:
27669b6f715bSMatthew G. Knepley + dm      - The mesh
27679b6f715bSMatthew G. Knepley . X       - Global input vector
2768a1cb98faSBarry Smith . label   - The boundary `DMLabel`
2769a1cb98faSBarry Smith . numVals - The number of label values to use, or `PETSC_DETERMINE` for all values
2770a1cb98faSBarry Smith . vals    - The label values to use, or NULL for all values
277179ab67a3SMatthew G. Knepley . funcs   - The functions to integrate along the boundary for each field
27729b6f715bSMatthew G. Knepley - user    - The user context
27739b6f715bSMatthew G. Knepley 
27749b6f715bSMatthew G. Knepley   Output Parameter:
27759b6f715bSMatthew G. Knepley . integral - Integral for each field
27769b6f715bSMatthew G. Knepley 
27779b6f715bSMatthew G. Knepley   Level: developer
27789b6f715bSMatthew G. Knepley 
27791cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexComputeIntegralFEM()`, `DMPlexComputeBdResidualFEM()`
27809b6f715bSMatthew G. Knepley @*/
278179ab67a3SMatthew G. Knepley PetscErrorCode DMPlexComputeBdIntegral(DM dm, Vec X, DMLabel label, PetscInt numVals, const PetscInt vals[], void (**funcs)(PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], PetscReal, const PetscReal[], const PetscReal[], PetscInt, const PetscScalar[], PetscScalar[]), PetscScalar *integral, void *user)
2782d71ae5a4SJacob Faibussowitsch {
27839b6f715bSMatthew G. Knepley   Vec          locX;
27849b6f715bSMatthew G. Knepley   PetscSection section;
27859b6f715bSMatthew G. Knepley   DMLabel      depthLabel;
27869b6f715bSMatthew G. Knepley   IS           facetIS;
27879b6f715bSMatthew G. Knepley   PetscInt     dim, Nf, f, v;
27889b6f715bSMatthew G. Knepley 
27899b6f715bSMatthew G. Knepley   PetscFunctionBegin;
27909b6f715bSMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
27919b6f715bSMatthew G. Knepley   PetscValidHeaderSpecific(X, VEC_CLASSID, 2);
2792292bffcbSToby Isaac   PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 3);
27934f572ea9SToby Isaac   if (vals) PetscAssertPointer(vals, 5);
27944f572ea9SToby Isaac   PetscAssertPointer(integral, 7);
27959566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(DMPLEX_IntegralFEM, dm, 0, 0, 0));
27969566063dSJacob Faibussowitsch   PetscCall(DMPlexGetDepthLabel(dm, &depthLabel));
27979566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dm, &dim));
27989566063dSJacob Faibussowitsch   PetscCall(DMLabelGetStratumIS(depthLabel, dim - 1, &facetIS));
27999566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dm, &section));
28009566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetNumFields(section, &Nf));
28019b6f715bSMatthew G. Knepley   /* Get local solution with boundary values */
28029566063dSJacob Faibussowitsch   PetscCall(DMGetLocalVector(dm, &locX));
28039566063dSJacob Faibussowitsch   PetscCall(DMPlexInsertBoundaryValues(dm, PETSC_TRUE, locX, 0.0, NULL, NULL, NULL));
28049566063dSJacob Faibussowitsch   PetscCall(DMGlobalToLocalBegin(dm, X, INSERT_VALUES, locX));
28059566063dSJacob Faibussowitsch   PetscCall(DMGlobalToLocalEnd(dm, X, INSERT_VALUES, locX));
28069b6f715bSMatthew G. Knepley   /* Loop over label values */
28079566063dSJacob Faibussowitsch   PetscCall(PetscArrayzero(integral, Nf));
28089b6f715bSMatthew G. Knepley   for (v = 0; v < numVals; ++v) {
28099b6f715bSMatthew G. Knepley     IS           pointIS;
28109b6f715bSMatthew G. Knepley     PetscInt     numFaces, face;
28119b6f715bSMatthew G. Knepley     PetscScalar *fintegral;
28129b6f715bSMatthew G. Knepley 
28139566063dSJacob Faibussowitsch     PetscCall(DMLabelGetStratumIS(label, vals[v], &pointIS));
28149b6f715bSMatthew G. Knepley     if (!pointIS) continue; /* No points with that id on this process */
28159b6f715bSMatthew G. Knepley     {
28169b6f715bSMatthew G. Knepley       IS isectIS;
28179b6f715bSMatthew G. Knepley 
28189b6f715bSMatthew G. Knepley       /* TODO: Special cases of ISIntersect where it is quick to check a priori if one is a superset of the other */
28199566063dSJacob Faibussowitsch       PetscCall(ISIntersect_Caching_Internal(facetIS, pointIS, &isectIS));
28209566063dSJacob Faibussowitsch       PetscCall(ISDestroy(&pointIS));
28219b6f715bSMatthew G. Knepley       pointIS = isectIS;
28229b6f715bSMatthew G. Knepley     }
28239566063dSJacob Faibussowitsch     PetscCall(ISGetLocalSize(pointIS, &numFaces));
28249566063dSJacob Faibussowitsch     PetscCall(PetscCalloc1(numFaces * Nf, &fintegral));
282579ab67a3SMatthew G. Knepley     PetscCall(DMPlexComputeBdIntegral_Internal(dm, locX, pointIS, funcs, fintegral, user));
28269b6f715bSMatthew G. Knepley     /* Sum point contributions into integral */
28279371c9d4SSatish Balay     for (f = 0; f < Nf; ++f)
28289371c9d4SSatish Balay       for (face = 0; face < numFaces; ++face) integral[f] += fintegral[face * Nf + f];
28299566063dSJacob Faibussowitsch     PetscCall(PetscFree(fintegral));
28309566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&pointIS));
28319b6f715bSMatthew G. Knepley   }
28329566063dSJacob Faibussowitsch   PetscCall(DMRestoreLocalVector(dm, &locX));
28339566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&facetIS));
28349566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(DMPLEX_IntegralFEM, dm, 0, 0, 0));
28353ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
283664c72086SMatthew G. Knepley }
283764c72086SMatthew G. Knepley 
2838d69c5d34SMatthew G. Knepley /*@
28390318f8a0SStefano Zampini   DMPlexComputeInterpolatorNested - Form the local portion of the interpolation matrix from the coarse `DM` to a uniformly refined `DM`.
2840d69c5d34SMatthew G. Knepley 
2841d69c5d34SMatthew G. Knepley   Input Parameters:
2842cf51de39SMatthew G. Knepley + dmc       - The coarse mesh
2843cf51de39SMatthew G. Knepley . dmf       - The fine mesh
2844cf51de39SMatthew G. Knepley . isRefined - Flag indicating regular refinement, rather than the same topology
2845d69c5d34SMatthew G. Knepley - user      - The user context
2846d69c5d34SMatthew G. Knepley 
2847d69c5d34SMatthew G. Knepley   Output Parameter:
2848934789fcSMatthew G. Knepley . In - The interpolation matrix
2849d69c5d34SMatthew G. Knepley 
2850d69c5d34SMatthew G. Knepley   Level: developer
2851d69c5d34SMatthew G. Knepley 
2852ae3cf2c1SStefano Zampini .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexComputeInterpolatorGeneral()`
2853d69c5d34SMatthew G. Knepley @*/
2854d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeInterpolatorNested(DM dmc, DM dmf, PetscBool isRefined, Mat In, void *user)
2855d71ae5a4SJacob Faibussowitsch {
2856d69c5d34SMatthew G. Knepley   DM_Plex     *mesh = (DM_Plex *)dmc->data;
2857d69c5d34SMatthew G. Knepley   const char  *name = "Interpolator";
2858d69c5d34SMatthew G. Knepley   PetscFE     *feRef;
285997c42addSMatthew G. Knepley   PetscFV     *fvRef;
2860d69c5d34SMatthew G. Knepley   PetscSection fsection, fglobalSection;
2861d69c5d34SMatthew G. Knepley   PetscSection csection, cglobalSection;
2862d69c5d34SMatthew G. Knepley   PetscScalar *elemMat;
2863485ad865SMatthew G. Knepley   PetscInt     dim, Nf, f, fieldI, fieldJ, offsetI, offsetJ, cStart, cEnd, c;
28642ea9c922SToby Isaac   PetscInt     cTotDim = 0, rTotDim = 0;
2865d69c5d34SMatthew G. Knepley 
2866d69c5d34SMatthew G. Knepley   PetscFunctionBegin;
28679566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(DMPLEX_InterpolatorFEM, dmc, dmf, 0, 0));
28689566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dmf, &dim));
28699566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dmf, &fsection));
28709566063dSJacob Faibussowitsch   PetscCall(DMGetGlobalSection(dmf, &fglobalSection));
28719566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dmc, &csection));
28729566063dSJacob Faibussowitsch   PetscCall(DMGetGlobalSection(dmc, &cglobalSection));
28739566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetNumFields(fsection, &Nf));
28749566063dSJacob Faibussowitsch   PetscCall(DMPlexGetSimplexOrBoxCells(dmc, 0, &cStart, &cEnd));
28759566063dSJacob Faibussowitsch   PetscCall(PetscCalloc2(Nf, &feRef, Nf, &fvRef));
2876d69c5d34SMatthew G. Knepley   for (f = 0; f < Nf; ++f) {
28772ea9c922SToby Isaac     PetscObject  obj, objc;
28782ea9c922SToby Isaac     PetscClassId id, idc;
28792ea9c922SToby Isaac     PetscInt     rNb = 0, Nc = 0, cNb = 0;
2880d69c5d34SMatthew G. Knepley 
28819566063dSJacob Faibussowitsch     PetscCall(DMGetField(dmf, f, NULL, &obj));
28829566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetClassId(obj, &id));
288397c42addSMatthew G. Knepley     if (id == PETSCFE_CLASSID) {
288497c42addSMatthew G. Knepley       PetscFE fe = (PetscFE)obj;
288597c42addSMatthew G. Knepley 
2886cf51de39SMatthew G. Knepley       if (isRefined) {
28879566063dSJacob Faibussowitsch         PetscCall(PetscFERefine(fe, &feRef[f]));
2888cf51de39SMatthew G. Knepley       } else {
28899566063dSJacob Faibussowitsch         PetscCall(PetscObjectReference((PetscObject)fe));
2890cf51de39SMatthew G. Knepley         feRef[f] = fe;
2891cf51de39SMatthew G. Knepley       }
28929566063dSJacob Faibussowitsch       PetscCall(PetscFEGetDimension(feRef[f], &rNb));
28939566063dSJacob Faibussowitsch       PetscCall(PetscFEGetNumComponents(fe, &Nc));
289497c42addSMatthew G. Knepley     } else if (id == PETSCFV_CLASSID) {
289597c42addSMatthew G. Knepley       PetscFV        fv = (PetscFV)obj;
289697c42addSMatthew G. Knepley       PetscDualSpace Q;
289797c42addSMatthew G. Knepley 
2898cf51de39SMatthew G. Knepley       if (isRefined) {
28999566063dSJacob Faibussowitsch         PetscCall(PetscFVRefine(fv, &fvRef[f]));
2900cf51de39SMatthew G. Knepley       } else {
29019566063dSJacob Faibussowitsch         PetscCall(PetscObjectReference((PetscObject)fv));
2902cf51de39SMatthew G. Knepley         fvRef[f] = fv;
2903cf51de39SMatthew G. Knepley       }
29049566063dSJacob Faibussowitsch       PetscCall(PetscFVGetDualSpace(fvRef[f], &Q));
29059566063dSJacob Faibussowitsch       PetscCall(PetscDualSpaceGetDimension(Q, &rNb));
29069566063dSJacob Faibussowitsch       PetscCall(PetscFVGetDualSpace(fv, &Q));
29079566063dSJacob Faibussowitsch       PetscCall(PetscFVGetNumComponents(fv, &Nc));
290897c42addSMatthew G. Knepley     }
29099566063dSJacob Faibussowitsch     PetscCall(DMGetField(dmc, f, NULL, &objc));
29109566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetClassId(objc, &idc));
29112ea9c922SToby Isaac     if (idc == PETSCFE_CLASSID) {
29122ea9c922SToby Isaac       PetscFE fe = (PetscFE)objc;
29132ea9c922SToby Isaac 
29149566063dSJacob Faibussowitsch       PetscCall(PetscFEGetDimension(fe, &cNb));
29152ea9c922SToby Isaac     } else if (id == PETSCFV_CLASSID) {
29162ea9c922SToby Isaac       PetscFV        fv = (PetscFV)obj;
29172ea9c922SToby Isaac       PetscDualSpace Q;
29182ea9c922SToby Isaac 
29199566063dSJacob Faibussowitsch       PetscCall(PetscFVGetDualSpace(fv, &Q));
29209566063dSJacob Faibussowitsch       PetscCall(PetscDualSpaceGetDimension(Q, &cNb));
2921d69c5d34SMatthew G. Knepley     }
29222ea9c922SToby Isaac     rTotDim += rNb;
29232ea9c922SToby Isaac     cTotDim += cNb;
29242ea9c922SToby Isaac   }
29259566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(rTotDim * cTotDim, &elemMat));
29269566063dSJacob Faibussowitsch   PetscCall(PetscArrayzero(elemMat, rTotDim * cTotDim));
2927d69c5d34SMatthew G. Knepley   for (fieldI = 0, offsetI = 0; fieldI < Nf; ++fieldI) {
2928d69c5d34SMatthew G. Knepley     PetscDualSpace   Qref;
2929d69c5d34SMatthew G. Knepley     PetscQuadrature  f;
2930d69c5d34SMatthew G. Knepley     const PetscReal *qpoints, *qweights;
2931d69c5d34SMatthew G. Knepley     PetscReal       *points;
2932d69c5d34SMatthew G. Knepley     PetscInt         npoints = 0, Nc, Np, fpdim, i, k, p, d;
2933d69c5d34SMatthew G. Knepley 
2934d69c5d34SMatthew G. Knepley     /* Compose points from all dual basis functionals */
293597c42addSMatthew G. Knepley     if (feRef[fieldI]) {
29369566063dSJacob Faibussowitsch       PetscCall(PetscFEGetDualSpace(feRef[fieldI], &Qref));
29379566063dSJacob Faibussowitsch       PetscCall(PetscFEGetNumComponents(feRef[fieldI], &Nc));
293897c42addSMatthew G. Knepley     } else {
29399566063dSJacob Faibussowitsch       PetscCall(PetscFVGetDualSpace(fvRef[fieldI], &Qref));
29409566063dSJacob Faibussowitsch       PetscCall(PetscFVGetNumComponents(fvRef[fieldI], &Nc));
294197c42addSMatthew G. Knepley     }
29429566063dSJacob Faibussowitsch     PetscCall(PetscDualSpaceGetDimension(Qref, &fpdim));
2943d69c5d34SMatthew G. Knepley     for (i = 0; i < fpdim; ++i) {
29449566063dSJacob Faibussowitsch       PetscCall(PetscDualSpaceGetFunctional(Qref, i, &f));
29459566063dSJacob Faibussowitsch       PetscCall(PetscQuadratureGetData(f, NULL, NULL, &Np, NULL, NULL));
2946d69c5d34SMatthew G. Knepley       npoints += Np;
2947d69c5d34SMatthew G. Knepley     }
29489566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(npoints * dim, &points));
2949d69c5d34SMatthew G. Knepley     for (i = 0, k = 0; i < fpdim; ++i) {
29509566063dSJacob Faibussowitsch       PetscCall(PetscDualSpaceGetFunctional(Qref, i, &f));
29519566063dSJacob Faibussowitsch       PetscCall(PetscQuadratureGetData(f, NULL, NULL, &Np, &qpoints, NULL));
29529371c9d4SSatish Balay       for (p = 0; p < Np; ++p, ++k)
29539371c9d4SSatish Balay         for (d = 0; d < dim; ++d) points[k * dim + d] = qpoints[p * dim + d];
2954d69c5d34SMatthew G. Knepley     }
2955d69c5d34SMatthew G. Knepley 
2956d69c5d34SMatthew G. Knepley     for (fieldJ = 0, offsetJ = 0; fieldJ < Nf; ++fieldJ) {
295797c42addSMatthew G. Knepley       PetscObject  obj;
295897c42addSMatthew G. Knepley       PetscClassId id;
29599c3cf19fSMatthew G. Knepley       PetscInt     NcJ = 0, cpdim = 0, j, qNc;
2960d69c5d34SMatthew G. Knepley 
29619566063dSJacob Faibussowitsch       PetscCall(DMGetField(dmc, fieldJ, NULL, &obj));
29629566063dSJacob Faibussowitsch       PetscCall(PetscObjectGetClassId(obj, &id));
296397c42addSMatthew G. Knepley       if (id == PETSCFE_CLASSID) {
296497c42addSMatthew G. Knepley         PetscFE         fe = (PetscFE)obj;
2965ef0bb6c7SMatthew G. Knepley         PetscTabulation T  = NULL;
2966d69c5d34SMatthew G. Knepley 
2967d69c5d34SMatthew G. Knepley         /* Evaluate basis at points */
29689566063dSJacob Faibussowitsch         PetscCall(PetscFEGetNumComponents(fe, &NcJ));
29699566063dSJacob Faibussowitsch         PetscCall(PetscFEGetDimension(fe, &cpdim));
2970ffe73a53SMatthew G. Knepley         /* For now, fields only interpolate themselves */
2971ffe73a53SMatthew G. Knepley         if (fieldI == fieldJ) {
297263a3b9bcSJacob Faibussowitsch           PetscCheck(Nc == NcJ, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of components in fine space field %" PetscInt_FMT " does not match coarse field %" PetscInt_FMT, Nc, NcJ);
29739566063dSJacob Faibussowitsch           PetscCall(PetscFECreateTabulation(fe, 1, npoints, points, 0, &T));
2974d69c5d34SMatthew G. Knepley           for (i = 0, k = 0; i < fpdim; ++i) {
29759566063dSJacob Faibussowitsch             PetscCall(PetscDualSpaceGetFunctional(Qref, i, &f));
29769566063dSJacob Faibussowitsch             PetscCall(PetscQuadratureGetData(f, NULL, &qNc, &Np, NULL, &qweights));
297763a3b9bcSJacob Faibussowitsch             PetscCheck(qNc == NcJ, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of components in quadrature %" PetscInt_FMT " does not match coarse field %" PetscInt_FMT, qNc, NcJ);
2978d69c5d34SMatthew G. Knepley             for (p = 0; p < Np; ++p, ++k) {
297936a6d9c0SMatthew G. Knepley               for (j = 0; j < cpdim; ++j) {
2980d172c84bSMatthew G. Knepley                 /*
2981d172c84bSMatthew G. Knepley                    cTotDim:            Total columns in element interpolation matrix, sum of number of dual basis functionals in each field
2982d172c84bSMatthew G. Knepley                    offsetI, offsetJ:   Offsets into the larger element interpolation matrix for different fields
2983d172c84bSMatthew G. Knepley                    fpdim, i, cpdim, j: Dofs for fine and coarse grids, correspond to dual space basis functionals
2984d172c84bSMatthew G. Knepley                    qNC, Nc, Ncj, c:    Number of components in this field
2985d172c84bSMatthew G. Knepley                    Np, p:              Number of quad points in the fine grid functional i
2986d172c84bSMatthew G. Knepley                    k:                  i*Np + p, overall point number for the interpolation
2987d172c84bSMatthew G. Knepley                 */
2988ef0bb6c7SMatthew G. Knepley                 for (c = 0; c < Nc; ++c) elemMat[(offsetI + i) * cTotDim + offsetJ + j] += T->T[0][k * cpdim * NcJ + j * Nc + c] * qweights[p * qNc + c];
298936a6d9c0SMatthew G. Knepley               }
2990d69c5d34SMatthew G. Knepley             }
2991d69c5d34SMatthew G. Knepley           }
29929566063dSJacob Faibussowitsch           PetscCall(PetscTabulationDestroy(&T));
2993ffe73a53SMatthew G. Knepley         }
299497c42addSMatthew G. Knepley       } else if (id == PETSCFV_CLASSID) {
299597c42addSMatthew G. Knepley         PetscFV fv = (PetscFV)obj;
299697c42addSMatthew G. Knepley 
299797c42addSMatthew G. Knepley         /* Evaluate constant function at points */
29989566063dSJacob Faibussowitsch         PetscCall(PetscFVGetNumComponents(fv, &NcJ));
299997c42addSMatthew G. Knepley         cpdim = 1;
300097c42addSMatthew G. Knepley         /* For now, fields only interpolate themselves */
300197c42addSMatthew G. Knepley         if (fieldI == fieldJ) {
300263a3b9bcSJacob Faibussowitsch           PetscCheck(Nc == NcJ, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of components in fine space field %" PetscInt_FMT " does not match coarse field %" PetscInt_FMT, Nc, NcJ);
300397c42addSMatthew G. Knepley           for (i = 0, k = 0; i < fpdim; ++i) {
30049566063dSJacob Faibussowitsch             PetscCall(PetscDualSpaceGetFunctional(Qref, i, &f));
30059566063dSJacob Faibussowitsch             PetscCall(PetscQuadratureGetData(f, NULL, &qNc, &Np, NULL, &qweights));
300663a3b9bcSJacob Faibussowitsch             PetscCheck(qNc == NcJ, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of components in quadrature %" PetscInt_FMT " does not match coarse field %" PetscInt_FMT, qNc, NcJ);
300797c42addSMatthew G. Knepley             for (p = 0; p < Np; ++p, ++k) {
300897c42addSMatthew G. Knepley               for (j = 0; j < cpdim; ++j) {
3009458eb97cSMatthew G. Knepley                 for (c = 0; c < Nc; ++c) elemMat[(offsetI + i) * cTotDim + offsetJ + j] += 1.0 * qweights[p * qNc + c];
301097c42addSMatthew G. Knepley               }
301197c42addSMatthew G. Knepley             }
301297c42addSMatthew G. Knepley           }
301397c42addSMatthew G. Knepley         }
301497c42addSMatthew G. Knepley       }
3015d172c84bSMatthew G. Knepley       offsetJ += cpdim;
3016d69c5d34SMatthew G. Knepley     }
3017d172c84bSMatthew G. Knepley     offsetI += fpdim;
30189566063dSJacob Faibussowitsch     PetscCall(PetscFree(points));
3019d69c5d34SMatthew G. Knepley   }
30209566063dSJacob Faibussowitsch   if (mesh->printFEM > 1) PetscCall(DMPrintCellMatrix(0, name, rTotDim, cTotDim, elemMat));
30217f5b169aSMatthew G. Knepley   /* Preallocate matrix */
30227f5b169aSMatthew G. Knepley   {
3023c094ef40SMatthew G. Knepley     Mat          preallocator;
3024c094ef40SMatthew G. Knepley     PetscScalar *vals;
3025c094ef40SMatthew G. Knepley     PetscInt    *cellCIndices, *cellFIndices;
3026c094ef40SMatthew G. Knepley     PetscInt     locRows, locCols, cell;
30277f5b169aSMatthew G. Knepley 
30289566063dSJacob Faibussowitsch     PetscCall(MatGetLocalSize(In, &locRows, &locCols));
30299566063dSJacob Faibussowitsch     PetscCall(MatCreate(PetscObjectComm((PetscObject)In), &preallocator));
30309566063dSJacob Faibussowitsch     PetscCall(MatSetType(preallocator, MATPREALLOCATOR));
30319566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(preallocator, locRows, locCols, PETSC_DETERMINE, PETSC_DETERMINE));
30329566063dSJacob Faibussowitsch     PetscCall(MatSetUp(preallocator));
30339566063dSJacob Faibussowitsch     PetscCall(PetscCalloc3(rTotDim * cTotDim, &vals, cTotDim, &cellCIndices, rTotDim, &cellFIndices));
30347f5b169aSMatthew G. Knepley     for (cell = cStart; cell < cEnd; ++cell) {
3035cf51de39SMatthew G. Knepley       if (isRefined) {
30369566063dSJacob Faibussowitsch         PetscCall(DMPlexMatGetClosureIndicesRefined(dmf, fsection, fglobalSection, dmc, csection, cglobalSection, cell, cellCIndices, cellFIndices));
30379566063dSJacob Faibussowitsch         PetscCall(MatSetValues(preallocator, rTotDim, cellFIndices, cTotDim, cellCIndices, vals, INSERT_VALUES));
3038cf51de39SMatthew G. Knepley       } else {
3039e8e188d2SZach Atkins         PetscCall(DMPlexMatSetClosureGeneral(dmf, fsection, fglobalSection, PETSC_FALSE, dmc, csection, cglobalSection, PETSC_FALSE, preallocator, cell, vals, INSERT_VALUES));
3040cf51de39SMatthew G. Knepley       }
30417f5b169aSMatthew G. Knepley     }
30429566063dSJacob Faibussowitsch     PetscCall(PetscFree3(vals, cellCIndices, cellFIndices));
30439566063dSJacob Faibussowitsch     PetscCall(MatAssemblyBegin(preallocator, MAT_FINAL_ASSEMBLY));
30449566063dSJacob Faibussowitsch     PetscCall(MatAssemblyEnd(preallocator, MAT_FINAL_ASSEMBLY));
30459566063dSJacob Faibussowitsch     PetscCall(MatPreallocatorPreallocate(preallocator, PETSC_TRUE, In));
30469566063dSJacob Faibussowitsch     PetscCall(MatDestroy(&preallocator));
30477f5b169aSMatthew G. Knepley   }
30487f5b169aSMatthew G. Knepley   /* Fill matrix */
30499566063dSJacob Faibussowitsch   PetscCall(MatZeroEntries(In));
3050d69c5d34SMatthew G. Knepley   for (c = cStart; c < cEnd; ++c) {
3051cf51de39SMatthew G. Knepley     if (isRefined) {
30529566063dSJacob Faibussowitsch       PetscCall(DMPlexMatSetClosureRefined(dmf, fsection, fglobalSection, dmc, csection, cglobalSection, In, c, elemMat, INSERT_VALUES));
3053cf51de39SMatthew G. Knepley     } else {
3054e8e188d2SZach Atkins       PetscCall(DMPlexMatSetClosureGeneral(dmf, fsection, fglobalSection, PETSC_FALSE, dmc, csection, cglobalSection, PETSC_FALSE, In, c, elemMat, INSERT_VALUES));
3055cf51de39SMatthew G. Knepley     }
3056d69c5d34SMatthew G. Knepley   }
30579566063dSJacob Faibussowitsch   for (f = 0; f < Nf; ++f) PetscCall(PetscFEDestroy(&feRef[f]));
30589566063dSJacob Faibussowitsch   PetscCall(PetscFree2(feRef, fvRef));
30599566063dSJacob Faibussowitsch   PetscCall(PetscFree(elemMat));
30609566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(In, MAT_FINAL_ASSEMBLY));
30619566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(In, MAT_FINAL_ASSEMBLY));
30629318fe57SMatthew G. Knepley   if (mesh->printFEM > 1) {
30639566063dSJacob Faibussowitsch     PetscCall(PetscPrintf(PetscObjectComm((PetscObject)In), "%s:\n", name));
30642ce66baaSPierre Jolivet     PetscCall(MatFilter(In, 1.0e-10, PETSC_FALSE, PETSC_FALSE));
30659566063dSJacob Faibussowitsch     PetscCall(MatView(In, NULL));
3066d69c5d34SMatthew G. Knepley   }
30679566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(DMPLEX_InterpolatorFEM, dmc, dmf, 0, 0));
30683ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3069d69c5d34SMatthew G. Knepley }
30706c73c22cSMatthew G. Knepley 
3071d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeMassMatrixNested(DM dmc, DM dmf, Mat mass, void *user)
3072d71ae5a4SJacob Faibussowitsch {
3073bd041c0cSMatthew G. Knepley   SETERRQ(PetscObjectComm((PetscObject)dmc), PETSC_ERR_SUP, "Laziness");
3074bd041c0cSMatthew G. Knepley }
3075bd041c0cSMatthew G. Knepley 
307668132eb9SMatthew G. Knepley /*@
30770318f8a0SStefano Zampini   DMPlexComputeInterpolatorGeneral - Form the local portion of the interpolation matrix from the coarse `DM` to a non-nested fine `DM`.
307868132eb9SMatthew G. Knepley 
307968132eb9SMatthew G. Knepley   Input Parameters:
308068132eb9SMatthew G. Knepley + dmf  - The fine mesh
308168132eb9SMatthew G. Knepley . dmc  - The coarse mesh
308268132eb9SMatthew G. Knepley - user - The user context
308368132eb9SMatthew G. Knepley 
308468132eb9SMatthew G. Knepley   Output Parameter:
308568132eb9SMatthew G. Knepley . In - The interpolation matrix
308668132eb9SMatthew G. Knepley 
308768132eb9SMatthew G. Knepley   Level: developer
308868132eb9SMatthew G. Knepley 
3089ae3cf2c1SStefano Zampini .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexComputeInterpolatorNested()`
309068132eb9SMatthew G. Knepley @*/
3091d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeInterpolatorGeneral(DM dmc, DM dmf, Mat In, void *user)
3092d71ae5a4SJacob Faibussowitsch {
309364e98e1dSMatthew G. Knepley   DM_Plex     *mesh = (DM_Plex *)dmf->data;
309464e98e1dSMatthew G. Knepley   const char  *name = "Interpolator";
30954ef9d792SMatthew G. Knepley   PetscDS      prob;
3096a0806964SMatthew G. Knepley   Mat          interp;
3097a0806964SMatthew G. Knepley   PetscSection fsection, globalFSection;
3098a0806964SMatthew G. Knepley   PetscSection csection, globalCSection;
3099a0806964SMatthew G. Knepley   PetscInt     locRows, locCols;
31004ef9d792SMatthew G. Knepley   PetscReal   *x, *v0, *J, *invJ, detJ;
31014ef9d792SMatthew G. Knepley   PetscReal   *v0c, *Jc, *invJc, detJc;
31024ef9d792SMatthew G. Knepley   PetscScalar *elemMat;
3103a0806964SMatthew G. Knepley   PetscInt     dim, Nf, field, totDim, cStart, cEnd, cell, ccell, s;
31044ef9d792SMatthew G. Knepley 
31054ef9d792SMatthew G. Knepley   PetscFunctionBegin;
31069566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(DMPLEX_InterpolatorFEM, dmc, dmf, 0, 0));
31079566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateDim(dmc, &dim));
31089566063dSJacob Faibussowitsch   PetscCall(DMGetDS(dmc, &prob));
31099566063dSJacob Faibussowitsch   PetscCall(PetscDSGetWorkspace(prob, &x, NULL, NULL, NULL, NULL));
31109566063dSJacob Faibussowitsch   PetscCall(PetscDSGetNumFields(prob, &Nf));
31119566063dSJacob Faibussowitsch   PetscCall(PetscMalloc3(dim, &v0, dim * dim, &J, dim * dim, &invJ));
31129566063dSJacob Faibussowitsch   PetscCall(PetscMalloc3(dim, &v0c, dim * dim, &Jc, dim * dim, &invJc));
31139566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dmf, &fsection));
31149566063dSJacob Faibussowitsch   PetscCall(DMGetGlobalSection(dmf, &globalFSection));
31159566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dmc, &csection));
31169566063dSJacob Faibussowitsch   PetscCall(DMGetGlobalSection(dmc, &globalCSection));
3117a0806964SMatthew G. Knepley   PetscCall(DMPlexGetSimplexOrBoxCells(dmf, 0, &cStart, &cEnd));
31189566063dSJacob Faibussowitsch   PetscCall(PetscDSGetTotalDimension(prob, &totDim));
31199566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(totDim, &elemMat));
31204ef9d792SMatthew G. Knepley 
3121a0806964SMatthew G. Knepley   PetscCall(MatGetLocalSize(In, &locRows, &locCols));
3122a0806964SMatthew G. Knepley   PetscCall(MatCreate(PetscObjectComm((PetscObject)In), &interp));
3123a0806964SMatthew G. Knepley   PetscCall(MatSetType(interp, MATPREALLOCATOR));
3124a0806964SMatthew G. Knepley   PetscCall(MatSetSizes(interp, locRows, locCols, PETSC_DETERMINE, PETSC_DETERMINE));
3125a0806964SMatthew G. Knepley   PetscCall(MatSetUp(interp));
3126a0806964SMatthew G. Knepley   for (s = 0; s < 2; ++s) {
31274ef9d792SMatthew G. Knepley     for (field = 0; field < Nf; ++field) {
31284ef9d792SMatthew G. Knepley       PetscObject      obj;
31294ef9d792SMatthew G. Knepley       PetscClassId     id;
3130c0d7054bSMatthew G. Knepley       PetscDualSpace   Q = NULL;
3131ef0bb6c7SMatthew G. Knepley       PetscTabulation  T = NULL;
31324ef9d792SMatthew G. Knepley       PetscQuadrature  f;
31334ef9d792SMatthew G. Knepley       const PetscReal *qpoints, *qweights;
3134d0f6233fSMatthew G. Knepley       PetscInt         Nc, qNc, Np, fpdim, off, i, d;
31354ef9d792SMatthew G. Knepley 
3136d0f6233fSMatthew G. Knepley       PetscCall(PetscDSGetFieldOffset(prob, field, &off));
31379566063dSJacob Faibussowitsch       PetscCall(PetscDSGetDiscretization(prob, field, &obj));
31389566063dSJacob Faibussowitsch       PetscCall(PetscObjectGetClassId(obj, &id));
31394ef9d792SMatthew G. Knepley       if (id == PETSCFE_CLASSID) {
31404ef9d792SMatthew G. Knepley         PetscFE fe = (PetscFE)obj;
31414ef9d792SMatthew G. Knepley 
31429566063dSJacob Faibussowitsch         PetscCall(PetscFEGetDualSpace(fe, &Q));
31439566063dSJacob Faibussowitsch         PetscCall(PetscFEGetNumComponents(fe, &Nc));
3144a0806964SMatthew G. Knepley         if (s) PetscCall(PetscFECreateTabulation(fe, 1, 1, x, 0, &T));
31454ef9d792SMatthew G. Knepley       } else if (id == PETSCFV_CLASSID) {
31464ef9d792SMatthew G. Knepley         PetscFV fv = (PetscFV)obj;
31474ef9d792SMatthew G. Knepley 
31489566063dSJacob Faibussowitsch         PetscCall(PetscFVGetDualSpace(fv, &Q));
31494ef9d792SMatthew G. Knepley         Nc = 1;
315063a3b9bcSJacob Faibussowitsch       } else SETERRQ(PetscObjectComm((PetscObject)dmc), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, field);
31519566063dSJacob Faibussowitsch       PetscCall(PetscDualSpaceGetDimension(Q, &fpdim));
31524ef9d792SMatthew G. Knepley       /* For each fine grid cell */
31534ef9d792SMatthew G. Knepley       for (cell = cStart; cell < cEnd; ++cell) {
31544ef9d792SMatthew G. Knepley         PetscInt *findices, *cindices;
31554ef9d792SMatthew G. Knepley         PetscInt  numFIndices, numCIndices;
31564ef9d792SMatthew G. Knepley 
31579566063dSJacob Faibussowitsch         PetscCall(DMPlexGetClosureIndices(dmf, fsection, globalFSection, cell, PETSC_FALSE, &numFIndices, &findices, NULL, NULL));
31589566063dSJacob Faibussowitsch         PetscCall(DMPlexComputeCellGeometryFEM(dmf, cell, NULL, v0, J, invJ, &detJ));
3159d0f6233fSMatthew G. Knepley         PetscCheck(numFIndices == totDim, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of fine indices %" PetscInt_FMT " != %" PetscInt_FMT " dual basis vecs", numFIndices, totDim);
31604ef9d792SMatthew G. Knepley         for (i = 0; i < fpdim; ++i) {
31614ef9d792SMatthew G. Knepley           Vec                pointVec;
31624ef9d792SMatthew G. Knepley           PetscScalar       *pV;
316312111d7cSToby Isaac           PetscSF            coarseCellSF = NULL;
31643a93e3b7SToby Isaac           const PetscSFNode *coarseCells;
3165d0f6233fSMatthew G. Knepley           PetscInt           numCoarseCells, cpdim, row = findices[i + off], q, c, j;
31664ef9d792SMatthew G. Knepley 
31674ef9d792SMatthew G. Knepley           /* Get points from the dual basis functional quadrature */
31689566063dSJacob Faibussowitsch           PetscCall(PetscDualSpaceGetFunctional(Q, i, &f));
31699566063dSJacob Faibussowitsch           PetscCall(PetscQuadratureGetData(f, NULL, &qNc, &Np, &qpoints, &qweights));
317063a3b9bcSJacob Faibussowitsch           PetscCheck(qNc == Nc, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of components in quadrature %" PetscInt_FMT " does not match coarse field %" PetscInt_FMT, qNc, Nc);
31719566063dSJacob Faibussowitsch           PetscCall(VecCreateSeq(PETSC_COMM_SELF, Np * dim, &pointVec));
31729566063dSJacob Faibussowitsch           PetscCall(VecSetBlockSize(pointVec, dim));
31739566063dSJacob Faibussowitsch           PetscCall(VecGetArray(pointVec, &pV));
31744ef9d792SMatthew G. Knepley           for (q = 0; q < Np; ++q) {
3175c330f8ffSToby Isaac             const PetscReal xi0[3] = {-1., -1., -1.};
3176c330f8ffSToby Isaac 
31774ef9d792SMatthew G. Knepley             /* Transform point to real space */
3178c330f8ffSToby Isaac             CoordinatesRefToReal(dim, dim, xi0, v0, J, &qpoints[q * dim], x);
31794ef9d792SMatthew G. Knepley             for (d = 0; d < dim; ++d) pV[q * dim + d] = x[d];
31804ef9d792SMatthew G. Knepley           }
31819566063dSJacob Faibussowitsch           PetscCall(VecRestoreArray(pointVec, &pV));
31824ef9d792SMatthew G. Knepley           /* Get set of coarse cells that overlap points (would like to group points by coarse cell) */
31831555c271SMatthew G. Knepley           /* OPT: Read this out from preallocation information */
31849566063dSJacob Faibussowitsch           PetscCall(DMLocatePoints(dmc, pointVec, DM_POINTLOCATION_NEAREST, &coarseCellSF));
31854ef9d792SMatthew G. Knepley           /* Update preallocation info */
31869566063dSJacob Faibussowitsch           PetscCall(PetscSFGetGraph(coarseCellSF, NULL, &numCoarseCells, NULL, &coarseCells));
31875f80ce2aSJacob Faibussowitsch           PetscCheck(numCoarseCells == Np, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Not all closure points located");
31889566063dSJacob Faibussowitsch           PetscCall(VecGetArray(pointVec, &pV));
31894ef9d792SMatthew G. Knepley           for (ccell = 0; ccell < numCoarseCells; ++ccell) {
3190826eb36dSMatthew G. Knepley             PetscReal       pVReal[3];
3191c330f8ffSToby Isaac             const PetscReal xi0[3] = {-1., -1., -1.};
3192826eb36dSMatthew G. Knepley 
31939566063dSJacob Faibussowitsch             PetscCall(DMPlexGetClosureIndices(dmc, csection, globalCSection, coarseCells[ccell].index, PETSC_FALSE, &numCIndices, &cindices, NULL, NULL));
3194a0806964SMatthew G. Knepley             if (id == PETSCFE_CLASSID) PetscCall(PetscFEGetDimension((PetscFE)obj, &cpdim));
3195a0806964SMatthew G. Knepley             else cpdim = 1;
3196a0806964SMatthew G. Knepley 
3197a0806964SMatthew G. Knepley             if (s) {
31984ef9d792SMatthew G. Knepley               /* Transform points from real space to coarse reference space */
31999566063dSJacob Faibussowitsch               PetscCall(DMPlexComputeCellGeometryFEM(dmc, coarseCells[ccell].index, NULL, v0c, Jc, invJc, &detJc));
3200e2d86523SMatthew G. Knepley               for (d = 0; d < dim; ++d) pVReal[d] = PetscRealPart(pV[ccell * dim + d]);
3201c330f8ffSToby Isaac               CoordinatesRealToRef(dim, dim, xi0, v0c, invJc, pVReal, x);
32024ef9d792SMatthew G. Knepley 
32034ef9d792SMatthew G. Knepley               if (id == PETSCFE_CLASSID) {
32044ef9d792SMatthew G. Knepley                 /* Evaluate coarse basis on contained point */
3205a0806964SMatthew G. Knepley                 PetscCall(PetscFEComputeTabulation((PetscFE)obj, 1, x, 0, T));
32069566063dSJacob Faibussowitsch                 PetscCall(PetscArrayzero(elemMat, cpdim));
32074ef9d792SMatthew G. Knepley                 /* Get elemMat entries by multiplying by weight */
32084ef9d792SMatthew G. Knepley                 for (j = 0; j < cpdim; ++j) {
3209ef0bb6c7SMatthew G. Knepley                   for (c = 0; c < Nc; ++c) elemMat[j] += T->T[0][j * Nc + c] * qweights[ccell * qNc + c];
32104ef9d792SMatthew G. Knepley                 }
32114ef9d792SMatthew G. Knepley               } else {
32124ef9d792SMatthew G. Knepley                 for (j = 0; j < cpdim; ++j) {
32139c3cf19fSMatthew G. Knepley                   for (c = 0; c < Nc; ++c) elemMat[j] += 1.0 * qweights[ccell * qNc + c];
32144ef9d792SMatthew G. Knepley                 }
32154ef9d792SMatthew G. Knepley               }
32169566063dSJacob Faibussowitsch               if (mesh->printFEM > 1) PetscCall(DMPrintCellMatrix(cell, name, 1, numCIndices, elemMat));
3217a0806964SMatthew G. Knepley             }
3218a0806964SMatthew G. Knepley             /* Update interpolator */
3219d0f6233fSMatthew G. Knepley             PetscCheck(numCIndices == totDim, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Number of element matrix columns %" PetscInt_FMT " != %" PetscInt_FMT, numCIndices, totDim);
3220a0806964SMatthew G. Knepley             PetscCall(MatSetValues(interp, 1, &row, cpdim, &cindices[off], elemMat, INSERT_VALUES));
32219566063dSJacob Faibussowitsch             PetscCall(DMPlexRestoreClosureIndices(dmc, csection, globalCSection, coarseCells[ccell].index, PETSC_FALSE, &numCIndices, &cindices, NULL, NULL));
32224ef9d792SMatthew G. Knepley           }
32239566063dSJacob Faibussowitsch           PetscCall(VecRestoreArray(pointVec, &pV));
32249566063dSJacob Faibussowitsch           PetscCall(PetscSFDestroy(&coarseCellSF));
32259566063dSJacob Faibussowitsch           PetscCall(VecDestroy(&pointVec));
32264ef9d792SMatthew G. Knepley         }
32279566063dSJacob Faibussowitsch         PetscCall(DMPlexRestoreClosureIndices(dmf, fsection, globalFSection, cell, PETSC_FALSE, &numFIndices, &findices, NULL, NULL));
32284ef9d792SMatthew G. Knepley       }
3229a0806964SMatthew G. Knepley       if (s && id == PETSCFE_CLASSID) PetscCall(PetscTabulationDestroy(&T));
3230a0806964SMatthew G. Knepley     }
3231a0806964SMatthew G. Knepley     if (!s) {
3232a0806964SMatthew G. Knepley       PetscCall(MatAssemblyBegin(interp, MAT_FINAL_ASSEMBLY));
3233a0806964SMatthew G. Knepley       PetscCall(MatAssemblyEnd(interp, MAT_FINAL_ASSEMBLY));
3234a0806964SMatthew G. Knepley       PetscCall(MatPreallocatorPreallocate(interp, PETSC_TRUE, In));
3235a0806964SMatthew G. Knepley       PetscCall(MatDestroy(&interp));
3236a0806964SMatthew G. Knepley       interp = In;
3237a0806964SMatthew G. Knepley     }
32384ef9d792SMatthew G. Knepley   }
32399566063dSJacob Faibussowitsch   PetscCall(PetscFree3(v0, J, invJ));
32409566063dSJacob Faibussowitsch   PetscCall(PetscFree3(v0c, Jc, invJc));
32419566063dSJacob Faibussowitsch   PetscCall(PetscFree(elemMat));
32429566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(In, MAT_FINAL_ASSEMBLY));
32439566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(In, MAT_FINAL_ASSEMBLY));
32449566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(DMPLEX_InterpolatorFEM, dmc, dmf, 0, 0));
32453ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
32464ef9d792SMatthew G. Knepley }
32474ef9d792SMatthew G. Knepley 
324846fa42a0SMatthew G. Knepley /*@
32490318f8a0SStefano Zampini   DMPlexComputeMassMatrixGeneral - Form the local portion of the mass matrix from the coarse `DM` to a non-nested fine `DM`.
3250bd041c0cSMatthew G. Knepley 
3251bd041c0cSMatthew G. Knepley   Input Parameters:
3252bd041c0cSMatthew G. Knepley + dmf  - The fine mesh
3253bd041c0cSMatthew G. Knepley . dmc  - The coarse mesh
3254bd041c0cSMatthew G. Knepley - user - The user context
3255bd041c0cSMatthew G. Knepley 
3256bd041c0cSMatthew G. Knepley   Output Parameter:
3257bd041c0cSMatthew G. Knepley . mass - The mass matrix
3258bd041c0cSMatthew G. Knepley 
3259bd041c0cSMatthew G. Knepley   Level: developer
3260bd041c0cSMatthew G. Knepley 
3261ae3cf2c1SStefano Zampini .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexComputeMassMatrixNested()`, `DMPlexComputeInterpolatorNested()`, `DMPlexComputeInterpolatorGeneral()`
3262bd041c0cSMatthew G. Knepley @*/
3263d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeMassMatrixGeneral(DM dmc, DM dmf, Mat mass, void *user)
3264d71ae5a4SJacob Faibussowitsch {
3265bd041c0cSMatthew G. Knepley   DM_Plex     *mesh = (DM_Plex *)dmf->data;
3266bd041c0cSMatthew G. Knepley   const char  *name = "Mass Matrix";
3267bd041c0cSMatthew G. Knepley   PetscDS      prob;
3268bd041c0cSMatthew G. Knepley   PetscSection fsection, csection, globalFSection, globalCSection;
3269e8f14785SLisandro Dalcin   PetscHSetIJ  ht;
3270bd041c0cSMatthew G. Knepley   PetscLayout  rLayout;
3271bd041c0cSMatthew G. Knepley   PetscInt    *dnz, *onz;
3272bd041c0cSMatthew G. Knepley   PetscInt     locRows, rStart, rEnd;
3273bd041c0cSMatthew G. Knepley   PetscReal   *x, *v0, *J, *invJ, detJ;
3274bd041c0cSMatthew G. Knepley   PetscReal   *v0c, *Jc, *invJc, detJc;
3275bd041c0cSMatthew G. Knepley   PetscScalar *elemMat;
3276bd041c0cSMatthew G. Knepley   PetscInt     dim, Nf, field, totDim, cStart, cEnd, cell, ccell;
3277bd041c0cSMatthew G. Knepley 
3278bd041c0cSMatthew G. Knepley   PetscFunctionBegin;
32799566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateDim(dmc, &dim));
32809566063dSJacob Faibussowitsch   PetscCall(DMGetDS(dmc, &prob));
32819566063dSJacob Faibussowitsch   PetscCall(PetscDSGetWorkspace(prob, &x, NULL, NULL, NULL, NULL));
32829566063dSJacob Faibussowitsch   PetscCall(PetscDSGetNumFields(prob, &Nf));
32839566063dSJacob Faibussowitsch   PetscCall(PetscMalloc3(dim, &v0, dim * dim, &J, dim * dim, &invJ));
32849566063dSJacob Faibussowitsch   PetscCall(PetscMalloc3(dim, &v0c, dim * dim, &Jc, dim * dim, &invJc));
32859566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dmf, &fsection));
32869566063dSJacob Faibussowitsch   PetscCall(DMGetGlobalSection(dmf, &globalFSection));
32879566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dmc, &csection));
32889566063dSJacob Faibussowitsch   PetscCall(DMGetGlobalSection(dmc, &globalCSection));
32899566063dSJacob Faibussowitsch   PetscCall(DMPlexGetHeightStratum(dmf, 0, &cStart, &cEnd));
32909566063dSJacob Faibussowitsch   PetscCall(PetscDSGetTotalDimension(prob, &totDim));
32919566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(totDim, &elemMat));
3292bd041c0cSMatthew G. Knepley 
32939566063dSJacob Faibussowitsch   PetscCall(MatGetLocalSize(mass, &locRows, NULL));
32949566063dSJacob Faibussowitsch   PetscCall(PetscLayoutCreate(PetscObjectComm((PetscObject)mass), &rLayout));
32959566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetLocalSize(rLayout, locRows));
32969566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetBlockSize(rLayout, 1));
32979566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(rLayout));
32989566063dSJacob Faibussowitsch   PetscCall(PetscLayoutGetRange(rLayout, &rStart, &rEnd));
32999566063dSJacob Faibussowitsch   PetscCall(PetscLayoutDestroy(&rLayout));
33009566063dSJacob Faibussowitsch   PetscCall(PetscCalloc2(locRows, &dnz, locRows, &onz));
33019566063dSJacob Faibussowitsch   PetscCall(PetscHSetIJCreate(&ht));
3302bd041c0cSMatthew G. Knepley   for (field = 0; field < Nf; ++field) {
3303bd041c0cSMatthew G. Knepley     PetscObject      obj;
3304bd041c0cSMatthew G. Knepley     PetscClassId     id;
3305bd041c0cSMatthew G. Knepley     PetscQuadrature  quad;
3306bd041c0cSMatthew G. Knepley     const PetscReal *qpoints;
3307bd041c0cSMatthew G. Knepley     PetscInt         Nq, Nc, i, d;
3308bd041c0cSMatthew G. Knepley 
33099566063dSJacob Faibussowitsch     PetscCall(PetscDSGetDiscretization(prob, field, &obj));
33109566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetClassId(obj, &id));
33119566063dSJacob Faibussowitsch     if (id == PETSCFE_CLASSID) PetscCall(PetscFEGetQuadrature((PetscFE)obj, &quad));
33129566063dSJacob Faibussowitsch     else PetscCall(PetscFVGetQuadrature((PetscFV)obj, &quad));
33139566063dSJacob Faibussowitsch     PetscCall(PetscQuadratureGetData(quad, NULL, &Nc, &Nq, &qpoints, NULL));
3314bd041c0cSMatthew G. Knepley     /* For each fine grid cell */
3315bd041c0cSMatthew G. Knepley     for (cell = cStart; cell < cEnd; ++cell) {
3316bd041c0cSMatthew G. Knepley       Vec                pointVec;
3317bd041c0cSMatthew G. Knepley       PetscScalar       *pV;
3318bd041c0cSMatthew G. Knepley       PetscSF            coarseCellSF = NULL;
3319bd041c0cSMatthew G. Knepley       const PetscSFNode *coarseCells;
3320bd041c0cSMatthew G. Knepley       PetscInt           numCoarseCells, q, c;
3321bd041c0cSMatthew G. Knepley       PetscInt          *findices, *cindices;
3322bd041c0cSMatthew G. Knepley       PetscInt           numFIndices, numCIndices;
3323bd041c0cSMatthew G. Knepley 
33249566063dSJacob Faibussowitsch       PetscCall(DMPlexGetClosureIndices(dmf, fsection, globalFSection, cell, PETSC_FALSE, &numFIndices, &findices, NULL, NULL));
33259566063dSJacob Faibussowitsch       PetscCall(DMPlexComputeCellGeometryFEM(dmf, cell, NULL, v0, J, invJ, &detJ));
3326bd041c0cSMatthew G. Knepley       /* Get points from the quadrature */
33279566063dSJacob Faibussowitsch       PetscCall(VecCreateSeq(PETSC_COMM_SELF, Nq * dim, &pointVec));
33289566063dSJacob Faibussowitsch       PetscCall(VecSetBlockSize(pointVec, dim));
33299566063dSJacob Faibussowitsch       PetscCall(VecGetArray(pointVec, &pV));
3330bd041c0cSMatthew G. Knepley       for (q = 0; q < Nq; ++q) {
3331c330f8ffSToby Isaac         const PetscReal xi0[3] = {-1., -1., -1.};
3332c330f8ffSToby Isaac 
3333bd041c0cSMatthew G. Knepley         /* Transform point to real space */
3334c330f8ffSToby Isaac         CoordinatesRefToReal(dim, dim, xi0, v0, J, &qpoints[q * dim], x);
3335bd041c0cSMatthew G. Knepley         for (d = 0; d < dim; ++d) pV[q * dim + d] = x[d];
3336bd041c0cSMatthew G. Knepley       }
33379566063dSJacob Faibussowitsch       PetscCall(VecRestoreArray(pointVec, &pV));
3338bd041c0cSMatthew G. Knepley       /* Get set of coarse cells that overlap points (would like to group points by coarse cell) */
33399566063dSJacob Faibussowitsch       PetscCall(DMLocatePoints(dmc, pointVec, DM_POINTLOCATION_NEAREST, &coarseCellSF));
33409566063dSJacob Faibussowitsch       PetscCall(PetscSFViewFromOptions(coarseCellSF, NULL, "-interp_sf_view"));
3341bd041c0cSMatthew G. Knepley       /* Update preallocation info */
33429566063dSJacob Faibussowitsch       PetscCall(PetscSFGetGraph(coarseCellSF, NULL, &numCoarseCells, NULL, &coarseCells));
33435f80ce2aSJacob Faibussowitsch       PetscCheck(numCoarseCells == Nq, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Not all closure points located");
3344bd041c0cSMatthew G. Knepley       {
3345e8f14785SLisandro Dalcin         PetscHashIJKey key;
3346e8f14785SLisandro Dalcin         PetscBool      missing;
3347bd041c0cSMatthew G. Knepley 
3348bd041c0cSMatthew G. Knepley         for (i = 0; i < numFIndices; ++i) {
3349e8f14785SLisandro Dalcin           key.i = findices[i];
3350e8f14785SLisandro Dalcin           if (key.i >= 0) {
3351bd041c0cSMatthew G. Knepley             /* Get indices for coarse elements */
3352bd041c0cSMatthew G. Knepley             for (ccell = 0; ccell < numCoarseCells; ++ccell) {
33539566063dSJacob Faibussowitsch               PetscCall(DMPlexGetClosureIndices(dmc, csection, globalCSection, coarseCells[ccell].index, PETSC_FALSE, &numCIndices, &cindices, NULL, NULL));
3354bd041c0cSMatthew G. Knepley               for (c = 0; c < numCIndices; ++c) {
3355e8f14785SLisandro Dalcin                 key.j = cindices[c];
3356e8f14785SLisandro Dalcin                 if (key.j < 0) continue;
33579566063dSJacob Faibussowitsch                 PetscCall(PetscHSetIJQueryAdd(ht, key, &missing));
3358bd041c0cSMatthew G. Knepley                 if (missing) {
3359e8f14785SLisandro Dalcin                   if ((key.j >= rStart) && (key.j < rEnd)) ++dnz[key.i - rStart];
3360e8f14785SLisandro Dalcin                   else ++onz[key.i - rStart];
3361bd041c0cSMatthew G. Knepley                 }
3362bd041c0cSMatthew G. Knepley               }
33639566063dSJacob Faibussowitsch               PetscCall(DMPlexRestoreClosureIndices(dmc, csection, globalCSection, coarseCells[ccell].index, PETSC_FALSE, &numCIndices, &cindices, NULL, NULL));
3364bd041c0cSMatthew G. Knepley             }
3365bd041c0cSMatthew G. Knepley           }
3366bd041c0cSMatthew G. Knepley         }
3367bd041c0cSMatthew G. Knepley       }
33689566063dSJacob Faibussowitsch       PetscCall(PetscSFDestroy(&coarseCellSF));
33699566063dSJacob Faibussowitsch       PetscCall(VecDestroy(&pointVec));
33709566063dSJacob Faibussowitsch       PetscCall(DMPlexRestoreClosureIndices(dmf, fsection, globalFSection, cell, PETSC_FALSE, &numFIndices, &findices, NULL, NULL));
3371bd041c0cSMatthew G. Knepley     }
3372bd041c0cSMatthew G. Knepley   }
33739566063dSJacob Faibussowitsch   PetscCall(PetscHSetIJDestroy(&ht));
33749566063dSJacob Faibussowitsch   PetscCall(MatXAIJSetPreallocation(mass, 1, dnz, onz, NULL, NULL));
33759566063dSJacob Faibussowitsch   PetscCall(MatSetOption(mass, MAT_NEW_NONZERO_ALLOCATION_ERR, PETSC_TRUE));
33769566063dSJacob Faibussowitsch   PetscCall(PetscFree2(dnz, onz));
3377bd041c0cSMatthew G. Knepley   for (field = 0; field < Nf; ++field) {
3378bd041c0cSMatthew G. Knepley     PetscObject      obj;
3379bd041c0cSMatthew G. Knepley     PetscClassId     id;
3380ef0bb6c7SMatthew G. Knepley     PetscTabulation  T, Tfine;
3381bd041c0cSMatthew G. Knepley     PetscQuadrature  quad;
3382bd041c0cSMatthew G. Knepley     const PetscReal *qpoints, *qweights;
3383bd041c0cSMatthew G. Knepley     PetscInt         Nq, Nc, i, d;
3384bd041c0cSMatthew G. Knepley 
33859566063dSJacob Faibussowitsch     PetscCall(PetscDSGetDiscretization(prob, field, &obj));
33869566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetClassId(obj, &id));
3387ef0bb6c7SMatthew G. Knepley     if (id == PETSCFE_CLASSID) {
33889566063dSJacob Faibussowitsch       PetscCall(PetscFEGetQuadrature((PetscFE)obj, &quad));
33899566063dSJacob Faibussowitsch       PetscCall(PetscFEGetCellTabulation((PetscFE)obj, 1, &Tfine));
33909566063dSJacob Faibussowitsch       PetscCall(PetscFECreateTabulation((PetscFE)obj, 1, 1, x, 0, &T));
3391ef0bb6c7SMatthew G. Knepley     } else {
33929566063dSJacob Faibussowitsch       PetscCall(PetscFVGetQuadrature((PetscFV)obj, &quad));
3393ef0bb6c7SMatthew G. Knepley     }
33949566063dSJacob Faibussowitsch     PetscCall(PetscQuadratureGetData(quad, NULL, &Nc, &Nq, &qpoints, &qweights));
3395bd041c0cSMatthew G. Knepley     /* For each fine grid cell */
3396bd041c0cSMatthew G. Knepley     for (cell = cStart; cell < cEnd; ++cell) {
3397bd041c0cSMatthew G. Knepley       Vec                pointVec;
3398bd041c0cSMatthew G. Knepley       PetscScalar       *pV;
3399bd041c0cSMatthew G. Knepley       PetscSF            coarseCellSF = NULL;
3400bd041c0cSMatthew G. Knepley       const PetscSFNode *coarseCells;
3401bd041c0cSMatthew G. Knepley       PetscInt           numCoarseCells, cpdim, q, c, j;
3402bd041c0cSMatthew G. Knepley       PetscInt          *findices, *cindices;
3403bd041c0cSMatthew G. Knepley       PetscInt           numFIndices, numCIndices;
3404bd041c0cSMatthew G. Knepley 
34059566063dSJacob Faibussowitsch       PetscCall(DMPlexGetClosureIndices(dmf, fsection, globalFSection, cell, PETSC_FALSE, &numFIndices, &findices, NULL, NULL));
34069566063dSJacob Faibussowitsch       PetscCall(DMPlexComputeCellGeometryFEM(dmf, cell, NULL, v0, J, invJ, &detJ));
3407bd041c0cSMatthew G. Knepley       /* Get points from the quadrature */
34089566063dSJacob Faibussowitsch       PetscCall(VecCreateSeq(PETSC_COMM_SELF, Nq * dim, &pointVec));
34099566063dSJacob Faibussowitsch       PetscCall(VecSetBlockSize(pointVec, dim));
34109566063dSJacob Faibussowitsch       PetscCall(VecGetArray(pointVec, &pV));
3411bd041c0cSMatthew G. Knepley       for (q = 0; q < Nq; ++q) {
3412c330f8ffSToby Isaac         const PetscReal xi0[3] = {-1., -1., -1.};
3413c330f8ffSToby Isaac 
3414bd041c0cSMatthew G. Knepley         /* Transform point to real space */
3415c330f8ffSToby Isaac         CoordinatesRefToReal(dim, dim, xi0, v0, J, &qpoints[q * dim], x);
3416bd041c0cSMatthew G. Knepley         for (d = 0; d < dim; ++d) pV[q * dim + d] = x[d];
3417bd041c0cSMatthew G. Knepley       }
34189566063dSJacob Faibussowitsch       PetscCall(VecRestoreArray(pointVec, &pV));
3419bd041c0cSMatthew G. Knepley       /* Get set of coarse cells that overlap points (would like to group points by coarse cell) */
34209566063dSJacob Faibussowitsch       PetscCall(DMLocatePoints(dmc, pointVec, DM_POINTLOCATION_NEAREST, &coarseCellSF));
3421bd041c0cSMatthew G. Knepley       /* Update matrix */
34229566063dSJacob Faibussowitsch       PetscCall(PetscSFGetGraph(coarseCellSF, NULL, &numCoarseCells, NULL, &coarseCells));
34235f80ce2aSJacob Faibussowitsch       PetscCheck(numCoarseCells == Nq, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Not all closure points located");
34249566063dSJacob Faibussowitsch       PetscCall(VecGetArray(pointVec, &pV));
3425bd041c0cSMatthew G. Knepley       for (ccell = 0; ccell < numCoarseCells; ++ccell) {
3426bd041c0cSMatthew G. Knepley         PetscReal       pVReal[3];
3427c330f8ffSToby Isaac         const PetscReal xi0[3] = {-1., -1., -1.};
3428c330f8ffSToby Isaac 
34299566063dSJacob Faibussowitsch         PetscCall(DMPlexGetClosureIndices(dmc, csection, globalCSection, coarseCells[ccell].index, PETSC_FALSE, &numCIndices, &cindices, NULL, NULL));
3430bd041c0cSMatthew G. Knepley         /* Transform points from real space to coarse reference space */
34319566063dSJacob Faibussowitsch         PetscCall(DMPlexComputeCellGeometryFEM(dmc, coarseCells[ccell].index, NULL, v0c, Jc, invJc, &detJc));
3432bd041c0cSMatthew G. Knepley         for (d = 0; d < dim; ++d) pVReal[d] = PetscRealPart(pV[ccell * dim + d]);
3433c330f8ffSToby Isaac         CoordinatesRealToRef(dim, dim, xi0, v0c, invJc, pVReal, x);
3434bd041c0cSMatthew G. Knepley 
3435bd041c0cSMatthew G. Knepley         if (id == PETSCFE_CLASSID) {
3436bd041c0cSMatthew G. Knepley           PetscFE fe = (PetscFE)obj;
3437bd041c0cSMatthew G. Knepley 
3438bd041c0cSMatthew G. Knepley           /* Evaluate coarse basis on contained point */
34399566063dSJacob Faibussowitsch           PetscCall(PetscFEGetDimension(fe, &cpdim));
34409566063dSJacob Faibussowitsch           PetscCall(PetscFEComputeTabulation(fe, 1, x, 0, T));
3441bd041c0cSMatthew G. Knepley           /* Get elemMat entries by multiplying by weight */
3442bd041c0cSMatthew G. Knepley           for (i = 0; i < numFIndices; ++i) {
34439566063dSJacob Faibussowitsch             PetscCall(PetscArrayzero(elemMat, cpdim));
3444bd041c0cSMatthew G. Knepley             for (j = 0; j < cpdim; ++j) {
3445ef0bb6c7SMatthew G. Knepley               for (c = 0; c < Nc; ++c) elemMat[j] += T->T[0][j * Nc + c] * Tfine->T[0][(ccell * numFIndices + i) * Nc + c] * qweights[ccell * Nc + c] * detJ;
3446bd041c0cSMatthew G. Knepley             }
3447bd041c0cSMatthew G. Knepley             /* Update interpolator */
34489566063dSJacob Faibussowitsch             if (mesh->printFEM > 1) PetscCall(DMPrintCellMatrix(cell, name, 1, numCIndices, elemMat));
344963a3b9bcSJacob Faibussowitsch             PetscCheck(numCIndices == cpdim, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Number of element matrix columns %" PetscInt_FMT " != %" PetscInt_FMT, numCIndices, cpdim);
34509566063dSJacob Faibussowitsch             PetscCall(MatSetValues(mass, 1, &findices[i], numCIndices, cindices, elemMat, ADD_VALUES));
3451bd041c0cSMatthew G. Knepley           }
3452bd041c0cSMatthew G. Knepley         } else {
3453bd041c0cSMatthew G. Knepley           cpdim = 1;
3454bd041c0cSMatthew G. Knepley           for (i = 0; i < numFIndices; ++i) {
34559566063dSJacob Faibussowitsch             PetscCall(PetscArrayzero(elemMat, cpdim));
3456bd041c0cSMatthew G. Knepley             for (j = 0; j < cpdim; ++j) {
3457bd041c0cSMatthew G. Knepley               for (c = 0; c < Nc; ++c) elemMat[j] += 1.0 * 1.0 * qweights[ccell * Nc + c] * detJ;
3458bd041c0cSMatthew G. Knepley             }
3459bd041c0cSMatthew G. Knepley             /* Update interpolator */
34609566063dSJacob Faibussowitsch             if (mesh->printFEM > 1) PetscCall(DMPrintCellMatrix(cell, name, 1, numCIndices, elemMat));
346163a3b9bcSJacob Faibussowitsch             PetscCall(PetscPrintf(PETSC_COMM_SELF, "Nq: %" PetscInt_FMT " %" PetscInt_FMT " Nf: %" PetscInt_FMT " %" PetscInt_FMT " Nc: %" PetscInt_FMT " %" PetscInt_FMT "\n", ccell, Nq, i, numFIndices, j, numCIndices));
346263a3b9bcSJacob Faibussowitsch             PetscCheck(numCIndices == cpdim, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Number of element matrix columns %" PetscInt_FMT " != %" PetscInt_FMT, numCIndices, cpdim);
34639566063dSJacob Faibussowitsch             PetscCall(MatSetValues(mass, 1, &findices[i], numCIndices, cindices, elemMat, ADD_VALUES));
3464bd041c0cSMatthew G. Knepley           }
3465bd041c0cSMatthew G. Knepley         }
34669566063dSJacob Faibussowitsch         PetscCall(DMPlexRestoreClosureIndices(dmc, csection, globalCSection, coarseCells[ccell].index, PETSC_FALSE, &numCIndices, &cindices, NULL, NULL));
3467bd041c0cSMatthew G. Knepley       }
34689566063dSJacob Faibussowitsch       PetscCall(VecRestoreArray(pointVec, &pV));
34699566063dSJacob Faibussowitsch       PetscCall(PetscSFDestroy(&coarseCellSF));
34709566063dSJacob Faibussowitsch       PetscCall(VecDestroy(&pointVec));
34719566063dSJacob Faibussowitsch       PetscCall(DMPlexRestoreClosureIndices(dmf, fsection, globalFSection, cell, PETSC_FALSE, &numFIndices, &findices, NULL, NULL));
3472bd041c0cSMatthew G. Knepley     }
34739566063dSJacob Faibussowitsch     if (id == PETSCFE_CLASSID) PetscCall(PetscTabulationDestroy(&T));
3474bd041c0cSMatthew G. Knepley   }
34759566063dSJacob Faibussowitsch   PetscCall(PetscFree3(v0, J, invJ));
34769566063dSJacob Faibussowitsch   PetscCall(PetscFree3(v0c, Jc, invJc));
34779566063dSJacob Faibussowitsch   PetscCall(PetscFree(elemMat));
34789566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(mass, MAT_FINAL_ASSEMBLY));
34799566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(mass, MAT_FINAL_ASSEMBLY));
34803ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3481bd041c0cSMatthew G. Knepley }
3482bd041c0cSMatthew G. Knepley 
3483bd041c0cSMatthew G. Knepley /*@
348446fa42a0SMatthew G. Knepley   DMPlexComputeInjectorFEM - Compute a mapping from coarse unknowns to fine unknowns
348546fa42a0SMatthew G. Knepley 
348646fa42a0SMatthew G. Knepley   Input Parameters:
348746fa42a0SMatthew G. Knepley + dmc  - The coarse mesh
348860225df5SJacob Faibussowitsch . dmf  - The fine mesh
348946fa42a0SMatthew G. Knepley - user - The user context
349046fa42a0SMatthew G. Knepley 
349146fa42a0SMatthew G. Knepley   Output Parameter:
349246fa42a0SMatthew G. Knepley . sc - The mapping
349346fa42a0SMatthew G. Knepley 
349446fa42a0SMatthew G. Knepley   Level: developer
349546fa42a0SMatthew G. Knepley 
3496ae3cf2c1SStefano Zampini .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexComputeInterpolatorNested()`
349746fa42a0SMatthew G. Knepley @*/
3498d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeInjectorFEM(DM dmc, DM dmf, VecScatter *sc, void *user)
3499d71ae5a4SJacob Faibussowitsch {
3500e9d4ef1bSMatthew G. Knepley   PetscDS      prob;
35017c927364SMatthew G. Knepley   PetscFE     *feRef;
350297c42addSMatthew G. Knepley   PetscFV     *fvRef;
35037c927364SMatthew G. Knepley   Vec          fv, cv;
35047c927364SMatthew G. Knepley   IS           fis, cis;
35057c927364SMatthew G. Knepley   PetscSection fsection, fglobalSection, csection, cglobalSection;
35067c927364SMatthew G. Knepley   PetscInt    *cmap, *cellCIndices, *cellFIndices, *cindices, *findices;
3507485ad865SMatthew G. Knepley   PetscInt     cTotDim, fTotDim = 0, Nf, f, field, cStart, cEnd, c, dim, d, startC, endC, offsetC, offsetF, m;
35086f3d3cbcSMatthew G. Knepley   PetscBool   *needAvg;
35097c927364SMatthew G. Knepley 
35107c927364SMatthew G. Knepley   PetscFunctionBegin;
35119566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(DMPLEX_InjectorFEM, dmc, dmf, 0, 0));
35129566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dmf, &dim));
35139566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dmf, &fsection));
35149566063dSJacob Faibussowitsch   PetscCall(DMGetGlobalSection(dmf, &fglobalSection));
35159566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dmc, &csection));
35169566063dSJacob Faibussowitsch   PetscCall(DMGetGlobalSection(dmc, &cglobalSection));
35179566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetNumFields(fsection, &Nf));
35189566063dSJacob Faibussowitsch   PetscCall(DMPlexGetSimplexOrBoxCells(dmc, 0, &cStart, &cEnd));
35199566063dSJacob Faibussowitsch   PetscCall(DMGetDS(dmc, &prob));
35209566063dSJacob Faibussowitsch   PetscCall(PetscCalloc3(Nf, &feRef, Nf, &fvRef, Nf, &needAvg));
35217c927364SMatthew G. Knepley   for (f = 0; f < Nf; ++f) {
352297c42addSMatthew G. Knepley     PetscObject  obj;
352397c42addSMatthew G. Knepley     PetscClassId id;
3524aa7890ccSMatthew G. Knepley     PetscInt     fNb = 0, Nc = 0;
35257c927364SMatthew G. Knepley 
35269566063dSJacob Faibussowitsch     PetscCall(PetscDSGetDiscretization(prob, f, &obj));
35279566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetClassId(obj, &id));
352897c42addSMatthew G. Knepley     if (id == PETSCFE_CLASSID) {
352997c42addSMatthew G. Knepley       PetscFE    fe = (PetscFE)obj;
35306f3d3cbcSMatthew G. Knepley       PetscSpace sp;
35319b2fc754SMatthew G. Knepley       PetscInt   maxDegree;
353297c42addSMatthew G. Knepley 
35339566063dSJacob Faibussowitsch       PetscCall(PetscFERefine(fe, &feRef[f]));
35349566063dSJacob Faibussowitsch       PetscCall(PetscFEGetDimension(feRef[f], &fNb));
35359566063dSJacob Faibussowitsch       PetscCall(PetscFEGetNumComponents(fe, &Nc));
35369566063dSJacob Faibussowitsch       PetscCall(PetscFEGetBasisSpace(fe, &sp));
35379566063dSJacob Faibussowitsch       PetscCall(PetscSpaceGetDegree(sp, NULL, &maxDegree));
35389b2fc754SMatthew G. Knepley       if (!maxDegree) needAvg[f] = PETSC_TRUE;
353997c42addSMatthew G. Knepley     } else if (id == PETSCFV_CLASSID) {
354097c42addSMatthew G. Knepley       PetscFV        fv = (PetscFV)obj;
354197c42addSMatthew G. Knepley       PetscDualSpace Q;
354297c42addSMatthew G. Knepley 
35439566063dSJacob Faibussowitsch       PetscCall(PetscFVRefine(fv, &fvRef[f]));
35449566063dSJacob Faibussowitsch       PetscCall(PetscFVGetDualSpace(fvRef[f], &Q));
35459566063dSJacob Faibussowitsch       PetscCall(PetscDualSpaceGetDimension(Q, &fNb));
35469566063dSJacob Faibussowitsch       PetscCall(PetscFVGetNumComponents(fv, &Nc));
35476f3d3cbcSMatthew G. Knepley       needAvg[f] = PETSC_TRUE;
354897c42addSMatthew G. Knepley     }
3549d172c84bSMatthew G. Knepley     fTotDim += fNb;
35507c927364SMatthew G. Knepley   }
35519566063dSJacob Faibussowitsch   PetscCall(PetscDSGetTotalDimension(prob, &cTotDim));
35529566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(cTotDim, &cmap));
35537c927364SMatthew G. Knepley   for (field = 0, offsetC = 0, offsetF = 0; field < Nf; ++field) {
35547c927364SMatthew G. Knepley     PetscFE        feC;
355597c42addSMatthew G. Knepley     PetscFV        fvC;
35567c927364SMatthew G. Knepley     PetscDualSpace QF, QC;
3557d172c84bSMatthew G. Knepley     PetscInt       order = -1, NcF, NcC, fpdim, cpdim;
35587c927364SMatthew G. Knepley 
355997c42addSMatthew G. Knepley     if (feRef[field]) {
35609566063dSJacob Faibussowitsch       PetscCall(PetscDSGetDiscretization(prob, field, (PetscObject *)&feC));
35619566063dSJacob Faibussowitsch       PetscCall(PetscFEGetNumComponents(feC, &NcC));
35629566063dSJacob Faibussowitsch       PetscCall(PetscFEGetNumComponents(feRef[field], &NcF));
35639566063dSJacob Faibussowitsch       PetscCall(PetscFEGetDualSpace(feRef[field], &QF));
35649566063dSJacob Faibussowitsch       PetscCall(PetscDualSpaceGetOrder(QF, &order));
35659566063dSJacob Faibussowitsch       PetscCall(PetscDualSpaceGetDimension(QF, &fpdim));
35669566063dSJacob Faibussowitsch       PetscCall(PetscFEGetDualSpace(feC, &QC));
35679566063dSJacob Faibussowitsch       PetscCall(PetscDualSpaceGetDimension(QC, &cpdim));
356897c42addSMatthew G. Knepley     } else {
35699566063dSJacob Faibussowitsch       PetscCall(PetscDSGetDiscretization(prob, field, (PetscObject *)&fvC));
35709566063dSJacob Faibussowitsch       PetscCall(PetscFVGetNumComponents(fvC, &NcC));
35719566063dSJacob Faibussowitsch       PetscCall(PetscFVGetNumComponents(fvRef[field], &NcF));
35729566063dSJacob Faibussowitsch       PetscCall(PetscFVGetDualSpace(fvRef[field], &QF));
35739566063dSJacob Faibussowitsch       PetscCall(PetscDualSpaceGetDimension(QF, &fpdim));
35749566063dSJacob Faibussowitsch       PetscCall(PetscFVGetDualSpace(fvC, &QC));
35759566063dSJacob Faibussowitsch       PetscCall(PetscDualSpaceGetDimension(QC, &cpdim));
357697c42addSMatthew G. Knepley     }
357763a3b9bcSJacob Faibussowitsch     PetscCheck(NcF == NcC, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of components in fine space field %" PetscInt_FMT " does not match coarse field %" PetscInt_FMT, NcF, NcC);
35787c927364SMatthew G. Knepley     for (c = 0; c < cpdim; ++c) {
35797c927364SMatthew G. Knepley       PetscQuadrature  cfunc;
3580d172c84bSMatthew G. Knepley       const PetscReal *cqpoints, *cqweights;
3581d172c84bSMatthew G. Knepley       PetscInt         NqcC, NpC;
358297c42addSMatthew G. Knepley       PetscBool        found = PETSC_FALSE;
35837c927364SMatthew G. Knepley 
35849566063dSJacob Faibussowitsch       PetscCall(PetscDualSpaceGetFunctional(QC, c, &cfunc));
35859566063dSJacob Faibussowitsch       PetscCall(PetscQuadratureGetData(cfunc, NULL, &NqcC, &NpC, &cqpoints, &cqweights));
358663a3b9bcSJacob Faibussowitsch       PetscCheck(NqcC == NcC, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of quadrature components %" PetscInt_FMT " must match number of field components %" PetscInt_FMT, NqcC, NcC);
35871dca8a05SBarry Smith       PetscCheck(NpC == 1 || !feRef[field], PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Do not know how to do injection for moments");
35887c927364SMatthew G. Knepley       for (f = 0; f < fpdim; ++f) {
35897c927364SMatthew G. Knepley         PetscQuadrature  ffunc;
3590d172c84bSMatthew G. Knepley         const PetscReal *fqpoints, *fqweights;
35917c927364SMatthew G. Knepley         PetscReal        sum = 0.0;
3592d172c84bSMatthew G. Knepley         PetscInt         NqcF, NpF;
35937c927364SMatthew G. Knepley 
35949566063dSJacob Faibussowitsch         PetscCall(PetscDualSpaceGetFunctional(QF, f, &ffunc));
35959566063dSJacob Faibussowitsch         PetscCall(PetscQuadratureGetData(ffunc, NULL, &NqcF, &NpF, &fqpoints, &fqweights));
359663a3b9bcSJacob Faibussowitsch         PetscCheck(NqcF == NcF, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of quadrature components %" PetscInt_FMT " must match number of field components %" PetscInt_FMT, NqcF, NcF);
35977c927364SMatthew G. Knepley         if (NpC != NpF) continue;
35987c927364SMatthew G. Knepley         for (d = 0; d < dim; ++d) sum += PetscAbsReal(cqpoints[d] - fqpoints[d]);
35997c927364SMatthew G. Knepley         if (sum > 1.0e-9) continue;
3600d172c84bSMatthew G. Knepley         for (d = 0; d < NcC; ++d) sum += PetscAbsReal(cqweights[d] * fqweights[d]);
3601d172c84bSMatthew G. Knepley         if (sum < 1.0e-9) continue;
3602d172c84bSMatthew G. Knepley         cmap[offsetC + c] = offsetF + f;
360397c42addSMatthew G. Knepley         found             = PETSC_TRUE;
36047c927364SMatthew G. Knepley         break;
36057c927364SMatthew G. Knepley       }
360697c42addSMatthew G. Knepley       if (!found) {
360797c42addSMatthew G. Knepley         /* TODO We really want the average here, but some asshole put VecScatter in the interface */
3608d172c84bSMatthew G. Knepley         if (fvRef[field] || (feRef[field] && order == 0)) {
3609d172c84bSMatthew G. Knepley           cmap[offsetC + c] = offsetF + 0;
361097c42addSMatthew G. Knepley         } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Could not locate matching functional for injection");
361197c42addSMatthew G. Knepley       }
36127c927364SMatthew G. Knepley     }
3613d172c84bSMatthew G. Knepley     offsetC += cpdim;
3614d172c84bSMatthew G. Knepley     offsetF += fpdim;
36157c927364SMatthew G. Knepley   }
36169371c9d4SSatish Balay   for (f = 0; f < Nf; ++f) {
36179371c9d4SSatish Balay     PetscCall(PetscFEDestroy(&feRef[f]));
36189371c9d4SSatish Balay     PetscCall(PetscFVDestroy(&fvRef[f]));
36199371c9d4SSatish Balay   }
36209566063dSJacob Faibussowitsch   PetscCall(PetscFree3(feRef, fvRef, needAvg));
36217c927364SMatthew G. Knepley 
36229566063dSJacob Faibussowitsch   PetscCall(DMGetGlobalVector(dmf, &fv));
36239566063dSJacob Faibussowitsch   PetscCall(DMGetGlobalVector(dmc, &cv));
36249566063dSJacob Faibussowitsch   PetscCall(VecGetOwnershipRange(cv, &startC, &endC));
36259566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetConstrainedStorageSize(cglobalSection, &m));
36269566063dSJacob Faibussowitsch   PetscCall(PetscMalloc2(cTotDim, &cellCIndices, fTotDim, &cellFIndices));
36279566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(m, &cindices));
36289566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(m, &findices));
36297c927364SMatthew G. Knepley   for (d = 0; d < m; ++d) cindices[d] = findices[d] = -1;
36307c927364SMatthew G. Knepley   for (c = cStart; c < cEnd; ++c) {
36319566063dSJacob Faibussowitsch     PetscCall(DMPlexMatGetClosureIndicesRefined(dmf, fsection, fglobalSection, dmc, csection, cglobalSection, c, cellCIndices, cellFIndices));
36327c927364SMatthew G. Knepley     for (d = 0; d < cTotDim; ++d) {
36330bd915a7SMatthew G. Knepley       if ((cellCIndices[d] < startC) || (cellCIndices[d] >= endC)) continue;
3634d2457c26SMatthew G. Knepley       PetscCheck(!(findices[cellCIndices[d] - startC] >= 0) || !(findices[cellCIndices[d] - startC] != cellFIndices[cmap[d]]), PETSC_COMM_SELF, PETSC_ERR_PLIB, "Cell %" PetscInt_FMT " Coarse dof %" PetscInt_FMT " maps to both %" PetscInt_FMT " and %" PetscInt_FMT, c, cindices[cellCIndices[d] - startC], findices[cellCIndices[d] - startC], cellFIndices[cmap[d]]);
36357c927364SMatthew G. Knepley       cindices[cellCIndices[d] - startC] = cellCIndices[d];
36367c927364SMatthew G. Knepley       findices[cellCIndices[d] - startC] = cellFIndices[cmap[d]];
36377c927364SMatthew G. Knepley     }
36387c927364SMatthew G. Knepley   }
36399566063dSJacob Faibussowitsch   PetscCall(PetscFree(cmap));
36409566063dSJacob Faibussowitsch   PetscCall(PetscFree2(cellCIndices, cellFIndices));
36417c927364SMatthew G. Knepley 
36429566063dSJacob Faibussowitsch   PetscCall(ISCreateGeneral(PETSC_COMM_SELF, m, cindices, PETSC_OWN_POINTER, &cis));
36439566063dSJacob Faibussowitsch   PetscCall(ISCreateGeneral(PETSC_COMM_SELF, m, findices, PETSC_OWN_POINTER, &fis));
36449566063dSJacob Faibussowitsch   PetscCall(VecScatterCreate(cv, cis, fv, fis, sc));
36459566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&cis));
36469566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&fis));
36479566063dSJacob Faibussowitsch   PetscCall(DMRestoreGlobalVector(dmf, &fv));
36489566063dSJacob Faibussowitsch   PetscCall(DMRestoreGlobalVector(dmc, &cv));
36499566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(DMPLEX_InjectorFEM, dmc, dmf, 0, 0));
36503ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3651cb1e1211SMatthew G Knepley }
3652a1cf66bbSMatthew G. Knepley 
36532f856554SMatthew G. Knepley /*@C
36542f856554SMatthew G. Knepley   DMPlexGetCellFields - Retrieve the field values values for a chunk of cells
36552f856554SMatthew G. Knepley 
36562f856554SMatthew G. Knepley   Input Parameters:
3657a1cb98faSBarry Smith + dm     - The `DM`
36582f856554SMatthew G. Knepley . cellIS - The cells to include
36592f856554SMatthew G. Knepley . locX   - A local vector with the solution fields
36602f856554SMatthew G. Knepley . locX_t - A local vector with solution field time derivatives, or NULL
36612f856554SMatthew G. Knepley - locA   - A local vector with auxiliary fields, or NULL
36622f856554SMatthew G. Knepley 
36632f856554SMatthew G. Knepley   Output Parameters:
36642f856554SMatthew G. Knepley + u   - The field coefficients
36652f856554SMatthew G. Knepley . u_t - The fields derivative coefficients
36662f856554SMatthew G. Knepley - a   - The auxiliary field coefficients
36672f856554SMatthew G. Knepley 
36682f856554SMatthew G. Knepley   Level: developer
36692f856554SMatthew G. Knepley 
36701cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexGetFaceFields()`
36712f856554SMatthew G. Knepley @*/
3672d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexGetCellFields(DM dm, IS cellIS, Vec locX, Vec locX_t, Vec locA, PetscScalar **u, PetscScalar **u_t, PetscScalar **a)
3673d71ae5a4SJacob Faibussowitsch {
36742f856554SMatthew G. Knepley   DM              plex, plexA = NULL;
3675a6e0b375SMatthew G. Knepley   DMEnclosureType encAux;
36762f856554SMatthew G. Knepley   PetscSection    section, sectionAux;
36772f856554SMatthew G. Knepley   PetscDS         prob;
36782f856554SMatthew G. Knepley   const PetscInt *cells;
36792f856554SMatthew G. Knepley   PetscInt        cStart, cEnd, numCells, totDim, totDimAux, c;
36802f856554SMatthew G. Knepley 
36812f856554SMatthew G. Knepley   PetscFunctionBegin;
36822f856554SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
3683064a246eSJacob Faibussowitsch   PetscValidHeaderSpecific(locX, VEC_CLASSID, 3);
3684ad540459SPierre Jolivet   if (locX_t) PetscValidHeaderSpecific(locX_t, VEC_CLASSID, 4);
3685ad540459SPierre Jolivet   if (locA) PetscValidHeaderSpecific(locA, VEC_CLASSID, 5);
36864f572ea9SToby Isaac   PetscAssertPointer(u, 6);
36874f572ea9SToby Isaac   PetscAssertPointer(u_t, 7);
36884f572ea9SToby Isaac   PetscAssertPointer(a, 8);
36899566063dSJacob Faibussowitsch   PetscCall(DMPlexConvertPlex(dm, &plex, PETSC_FALSE));
36909566063dSJacob Faibussowitsch   PetscCall(ISGetPointRange(cellIS, &cStart, &cEnd, &cells));
36919566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dm, &section));
369207218a29SMatthew G. Knepley   PetscCall(DMGetCellDS(dm, cells ? cells[cStart] : cStart, &prob, NULL));
36939566063dSJacob Faibussowitsch   PetscCall(PetscDSGetTotalDimension(prob, &totDim));
36942f856554SMatthew G. Knepley   if (locA) {
36952f856554SMatthew G. Knepley     DM      dmAux;
36962f856554SMatthew G. Knepley     PetscDS probAux;
36972f856554SMatthew G. Knepley 
36989566063dSJacob Faibussowitsch     PetscCall(VecGetDM(locA, &dmAux));
36999566063dSJacob Faibussowitsch     PetscCall(DMGetEnclosureRelation(dmAux, dm, &encAux));
37009566063dSJacob Faibussowitsch     PetscCall(DMPlexConvertPlex(dmAux, &plexA, PETSC_FALSE));
37019566063dSJacob Faibussowitsch     PetscCall(DMGetLocalSection(dmAux, &sectionAux));
37029566063dSJacob Faibussowitsch     PetscCall(DMGetDS(dmAux, &probAux));
37039566063dSJacob Faibussowitsch     PetscCall(PetscDSGetTotalDimension(probAux, &totDimAux));
37042f856554SMatthew G. Knepley   }
37052f856554SMatthew G. Knepley   numCells = cEnd - cStart;
37069566063dSJacob Faibussowitsch   PetscCall(DMGetWorkArray(dm, numCells * totDim, MPIU_SCALAR, u));
37079371c9d4SSatish Balay   if (locX_t) PetscCall(DMGetWorkArray(dm, numCells * totDim, MPIU_SCALAR, u_t));
3708ad540459SPierre Jolivet   else *u_t = NULL;
37099371c9d4SSatish Balay   if (locA) PetscCall(DMGetWorkArray(dm, numCells * totDimAux, MPIU_SCALAR, a));
3710ad540459SPierre Jolivet   else *a = NULL;
37112f856554SMatthew G. Knepley   for (c = cStart; c < cEnd; ++c) {
37122f856554SMatthew G. Knepley     const PetscInt cell = cells ? cells[c] : c;
37132f856554SMatthew G. Knepley     const PetscInt cind = c - cStart;
37142f856554SMatthew G. Knepley     PetscScalar   *x = NULL, *x_t = NULL, *ul = *u, *ul_t = *u_t, *al = *a;
37152f856554SMatthew G. Knepley     PetscInt       i;
37162f856554SMatthew G. Knepley 
37179566063dSJacob Faibussowitsch     PetscCall(DMPlexVecGetClosure(plex, section, locX, cell, NULL, &x));
37182f856554SMatthew G. Knepley     for (i = 0; i < totDim; ++i) ul[cind * totDim + i] = x[i];
37199566063dSJacob Faibussowitsch     PetscCall(DMPlexVecRestoreClosure(plex, section, locX, cell, NULL, &x));
37202f856554SMatthew G. Knepley     if (locX_t) {
37219566063dSJacob Faibussowitsch       PetscCall(DMPlexVecGetClosure(plex, section, locX_t, cell, NULL, &x_t));
37222f856554SMatthew G. Knepley       for (i = 0; i < totDim; ++i) ul_t[cind * totDim + i] = x_t[i];
37239566063dSJacob Faibussowitsch       PetscCall(DMPlexVecRestoreClosure(plex, section, locX_t, cell, NULL, &x_t));
37242f856554SMatthew G. Knepley     }
37252f856554SMatthew G. Knepley     if (locA) {
37262f856554SMatthew G. Knepley       PetscInt subcell;
37279566063dSJacob Faibussowitsch       PetscCall(DMGetEnclosurePoint(plexA, dm, encAux, cell, &subcell));
37289566063dSJacob Faibussowitsch       PetscCall(DMPlexVecGetClosure(plexA, sectionAux, locA, subcell, NULL, &x));
37292f856554SMatthew G. Knepley       for (i = 0; i < totDimAux; ++i) al[cind * totDimAux + i] = x[i];
37309566063dSJacob Faibussowitsch       PetscCall(DMPlexVecRestoreClosure(plexA, sectionAux, locA, subcell, NULL, &x));
37312f856554SMatthew G. Knepley     }
37322f856554SMatthew G. Knepley   }
37339566063dSJacob Faibussowitsch   PetscCall(DMDestroy(&plex));
37349566063dSJacob Faibussowitsch   if (locA) PetscCall(DMDestroy(&plexA));
37359566063dSJacob Faibussowitsch   PetscCall(ISRestorePointRange(cellIS, &cStart, &cEnd, &cells));
37363ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
37372f856554SMatthew G. Knepley }
37382f856554SMatthew G. Knepley 
37392f856554SMatthew G. Knepley /*@C
37402f856554SMatthew G. Knepley   DMPlexRestoreCellFields - Restore the field values values for a chunk of cells
37412f856554SMatthew G. Knepley 
37422f856554SMatthew G. Knepley   Input Parameters:
3743a1cb98faSBarry Smith + dm     - The `DM`
37442f856554SMatthew G. Knepley . cellIS - The cells to include
37452f856554SMatthew G. Knepley . locX   - A local vector with the solution fields
37462f856554SMatthew G. Knepley . locX_t - A local vector with solution field time derivatives, or NULL
37472f856554SMatthew G. Knepley - locA   - A local vector with auxiliary fields, or NULL
37482f856554SMatthew G. Knepley 
37492f856554SMatthew G. Knepley   Output Parameters:
37502f856554SMatthew G. Knepley + u   - The field coefficients
37512f856554SMatthew G. Knepley . u_t - The fields derivative coefficients
37522f856554SMatthew G. Knepley - a   - The auxiliary field coefficients
37532f856554SMatthew G. Knepley 
37542f856554SMatthew G. Knepley   Level: developer
37552f856554SMatthew G. Knepley 
37561cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexGetFaceFields()`
37572f856554SMatthew G. Knepley @*/
3758d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexRestoreCellFields(DM dm, IS cellIS, Vec locX, Vec locX_t, Vec locA, PetscScalar **u, PetscScalar **u_t, PetscScalar **a)
3759d71ae5a4SJacob Faibussowitsch {
37602f856554SMatthew G. Knepley   PetscFunctionBegin;
37619566063dSJacob Faibussowitsch   PetscCall(DMRestoreWorkArray(dm, 0, MPIU_SCALAR, u));
37629566063dSJacob Faibussowitsch   if (locX_t) PetscCall(DMRestoreWorkArray(dm, 0, MPIU_SCALAR, u_t));
37639566063dSJacob Faibussowitsch   if (locA) PetscCall(DMRestoreWorkArray(dm, 0, MPIU_SCALAR, a));
37643ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
37652f856554SMatthew G. Knepley }
37662f856554SMatthew G. Knepley 
3767a4e35b19SJacob Faibussowitsch static PetscErrorCode DMPlexGetHybridCellFields(DM dm, IS cellIS, Vec locX, Vec locX_t, Vec locA, PetscScalar **u, PetscScalar **u_t, PetscScalar **a)
3768d71ae5a4SJacob Faibussowitsch {
376907218a29SMatthew G. Knepley   DM              plex, plexA = NULL;
377007218a29SMatthew G. Knepley   DMEnclosureType encAux;
377107218a29SMatthew G. Knepley   PetscSection    section, sectionAux;
377207218a29SMatthew G. Knepley   PetscDS         ds, dsIn;
37736528b96dSMatthew G. Knepley   const PetscInt *cells;
377407218a29SMatthew G. Knepley   PetscInt        cStart, cEnd, numCells, c, totDim, totDimAux, Nf, f;
37756528b96dSMatthew G. Knepley 
37766528b96dSMatthew G. Knepley   PetscFunctionBegin;
377707218a29SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
377807218a29SMatthew G. Knepley   PetscValidHeaderSpecific(cellIS, IS_CLASSID, 2);
377907218a29SMatthew G. Knepley   PetscValidHeaderSpecific(locX, VEC_CLASSID, 3);
378007218a29SMatthew G. Knepley   if (locX_t) { PetscValidHeaderSpecific(locX_t, VEC_CLASSID, 4); }
378107218a29SMatthew G. Knepley   if (locA) { PetscValidHeaderSpecific(locA, VEC_CLASSID, 5); }
37824f572ea9SToby Isaac   PetscAssertPointer(u, 6);
37834f572ea9SToby Isaac   PetscAssertPointer(u_t, 7);
37844f572ea9SToby Isaac   PetscAssertPointer(a, 8);
378507218a29SMatthew G. Knepley   PetscCall(ISGetPointRange(cellIS, &cStart, &cEnd, &cells));
378607218a29SMatthew G. Knepley   numCells = cEnd - cStart;
378707218a29SMatthew G. Knepley   PetscCall(DMPlexConvertPlex(dm, &plex, PETSC_FALSE));
378807218a29SMatthew G. Knepley   PetscCall(DMGetLocalSection(dm, &section));
378907218a29SMatthew G. Knepley   PetscCall(DMGetCellDS(dm, cells ? cells[cStart] : cStart, &ds, &dsIn));
379007218a29SMatthew G. Knepley   PetscCall(PetscDSGetNumFields(dsIn, &Nf));
379107218a29SMatthew G. Knepley   PetscCall(PetscDSGetTotalDimension(dsIn, &totDim));
379207218a29SMatthew G. Knepley   if (locA) {
379307218a29SMatthew G. Knepley     DM      dmAux;
379407218a29SMatthew G. Knepley     PetscDS probAux;
379507218a29SMatthew G. Knepley 
379607218a29SMatthew G. Knepley     PetscCall(VecGetDM(locA, &dmAux));
379707218a29SMatthew G. Knepley     PetscCall(DMGetEnclosureRelation(dmAux, dm, &encAux));
379807218a29SMatthew G. Knepley     PetscCall(DMPlexConvertPlex(dmAux, &plexA, PETSC_FALSE));
379907218a29SMatthew G. Knepley     PetscCall(DMGetLocalSection(dmAux, &sectionAux));
380007218a29SMatthew G. Knepley     PetscCall(DMGetDS(dmAux, &probAux));
380107218a29SMatthew G. Knepley     PetscCall(PetscDSGetTotalDimension(probAux, &totDimAux));
380207218a29SMatthew G. Knepley   }
380307218a29SMatthew G. Knepley   PetscCall(DMGetWorkArray(dm, numCells * totDim, MPIU_SCALAR, u));
380407218a29SMatthew G. Knepley   if (locX_t) PetscCall(DMGetWorkArray(dm, numCells * totDim, MPIU_SCALAR, u_t));
380507218a29SMatthew G. Knepley   else {
380607218a29SMatthew G. Knepley     *u_t = NULL;
380707218a29SMatthew G. Knepley   }
380807218a29SMatthew G. Knepley   if (locA) PetscCall(DMGetWorkArray(dm, numCells * totDimAux, MPIU_SCALAR, a));
380907218a29SMatthew G. Knepley   else {
381007218a29SMatthew G. Knepley     *a = NULL;
381107218a29SMatthew G. Knepley   }
381207218a29SMatthew G. Knepley   // Loop over cohesive cells
381307218a29SMatthew G. Knepley   for (c = cStart; c < cEnd; ++c) {
381407218a29SMatthew G. Knepley     const PetscInt  cell = cells ? cells[c] : c;
381507218a29SMatthew G. Knepley     const PetscInt  cind = c - cStart;
381674a0c561SMatthew G. Knepley     PetscScalar    *xf = NULL, *xc = NULL, *x = NULL, *xf_t = NULL, *xc_t = NULL;
38178e3a54c0SPierre Jolivet     PetscScalar    *ul = &(*u)[cind * totDim], *ul_t = PetscSafePointerPlusOffset(*u_t, cind * totDim);
381807218a29SMatthew G. Knepley     const PetscInt *cone, *ornt;
381907218a29SMatthew G. Knepley     PetscInt        Nx = 0, Nxf, s;
382007218a29SMatthew G. Knepley 
382107218a29SMatthew G. Knepley     PetscCall(DMPlexGetCone(dm, cell, &cone));
382207218a29SMatthew G. Knepley     PetscCall(DMPlexGetConeOrientation(dm, cell, &ornt));
382307218a29SMatthew G. Knepley     // Put in cohesive unknowns
382407218a29SMatthew G. Knepley     PetscCall(DMPlexVecGetClosure(plex, section, locX, cell, &Nxf, &xf));
382574a0c561SMatthew G. Knepley     if (locX_t) PetscCall(DMPlexVecGetClosure(plex, section, locX_t, cell, NULL, &xf_t));
382607218a29SMatthew G. Knepley     for (f = 0; f < Nf; ++f) {
382707218a29SMatthew G. Knepley       PetscInt  fdofIn, foff, foffIn;
382807218a29SMatthew G. Knepley       PetscBool cohesive;
382907218a29SMatthew G. Knepley 
383007218a29SMatthew G. Knepley       PetscCall(PetscDSGetCohesive(dsIn, f, &cohesive));
383107218a29SMatthew G. Knepley       if (!cohesive) continue;
383207218a29SMatthew G. Knepley       PetscCall(PetscDSGetFieldSize(dsIn, f, &fdofIn));
383307218a29SMatthew G. Knepley       PetscCall(PetscDSGetFieldOffsetCohesive(ds, f, &foff));
383407218a29SMatthew G. Knepley       PetscCall(PetscDSGetFieldOffsetCohesive(dsIn, f, &foffIn));
383507218a29SMatthew G. Knepley       for (PetscInt i = 0; i < fdofIn; ++i) ul[foffIn + i] = xf[foff + i];
383674a0c561SMatthew G. Knepley       if (locX_t)
383774a0c561SMatthew G. Knepley         for (PetscInt i = 0; i < fdofIn; ++i) ul_t[foffIn + i] = xf_t[foff + i];
383807218a29SMatthew G. Knepley       Nx += fdofIn;
383907218a29SMatthew G. Knepley     }
384007218a29SMatthew G. Knepley     PetscCall(DMPlexVecRestoreClosure(plex, section, locX, cell, &Nxf, &xf));
384174a0c561SMatthew G. Knepley     if (locX_t) PetscCall(DMPlexVecRestoreClosure(plex, section, locX_t, cell, NULL, &xf_t));
384207218a29SMatthew G. Knepley     // Loop over sides of surface
384307218a29SMatthew G. Knepley     for (s = 0; s < 2; ++s) {
384407218a29SMatthew G. Knepley       const PetscInt *support;
384507218a29SMatthew G. Knepley       const PetscInt  face = cone[s];
384607218a29SMatthew G. Knepley       PetscInt        ssize, ncell, Nxc;
384707218a29SMatthew G. Knepley 
384807218a29SMatthew G. Knepley       // I don't think I need the face to have 0 orientation in the hybrid cell
384907218a29SMatthew G. Knepley       //PetscCheck(!ornt[s], PETSC_COMM_SELF, PETSC_ERR_SUP, "Face %" PetscInt_FMT " in hybrid cell %" PetscInt_FMT " has orientation %" PetscInt_FMT " != 0", face, cell, ornt[s]);
385007218a29SMatthew G. Knepley       PetscCall(DMPlexGetSupport(dm, face, &support));
385107218a29SMatthew G. Knepley       PetscCall(DMPlexGetSupportSize(dm, face, &ssize));
385207218a29SMatthew G. Knepley       if (support[0] == cell) ncell = support[1];
385307218a29SMatthew G. Knepley       else if (support[1] == cell) ncell = support[0];
385407218a29SMatthew G. Knepley       else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Face %" PetscInt_FMT " does not have cell %" PetscInt_FMT " in its support", face, cell);
385507218a29SMatthew G. Knepley       // Get closure of both face and cell, stick in cell for normal fields and face for cohesive fields
385607218a29SMatthew G. Knepley       PetscCall(DMPlexVecGetClosure(plex, section, locX, ncell, &Nxc, &xc));
385774a0c561SMatthew G. Knepley       if (locX_t) PetscCall(DMPlexVecGetClosure(plex, section, locX_t, ncell, NULL, &xc_t));
385807218a29SMatthew G. Knepley       for (f = 0; f < Nf; ++f) {
385907218a29SMatthew G. Knepley         PetscInt  fdofIn, foffIn;
386007218a29SMatthew G. Knepley         PetscBool cohesive;
386107218a29SMatthew G. Knepley 
386207218a29SMatthew G. Knepley         PetscCall(PetscDSGetCohesive(dsIn, f, &cohesive));
386307218a29SMatthew G. Knepley         if (cohesive) continue;
386407218a29SMatthew G. Knepley         PetscCall(PetscDSGetFieldSize(dsIn, f, &fdofIn));
386507218a29SMatthew G. Knepley         PetscCall(PetscDSGetFieldOffsetCohesive(dsIn, f, &foffIn));
386607218a29SMatthew G. Knepley         for (PetscInt i = 0; i < fdofIn; ++i) ul[foffIn + s * fdofIn + i] = xc[foffIn + i];
386774a0c561SMatthew G. Knepley         if (locX_t)
386874a0c561SMatthew G. Knepley           for (PetscInt i = 0; i < fdofIn; ++i) ul_t[foffIn + s * fdofIn + i] = xc_t[foffIn + i];
386907218a29SMatthew G. Knepley         Nx += fdofIn;
387007218a29SMatthew G. Knepley       }
387107218a29SMatthew G. Knepley       PetscCall(DMPlexVecRestoreClosure(plex, section, locX, ncell, &Nxc, &xc));
387274a0c561SMatthew G. Knepley       if (locX_t) PetscCall(DMPlexVecRestoreClosure(plex, section, locX_t, ncell, NULL, &xc_t));
387307218a29SMatthew G. Knepley     }
387407218a29SMatthew G. Knepley     PetscCheck(Nx == totDim, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "Closure size %" PetscInt_FMT " for cell %" PetscInt_FMT " does not match DS size %" PetscInt_FMT, Nx, cell, totDim);
387507218a29SMatthew G. Knepley 
387607218a29SMatthew G. Knepley     if (locA) {
387707218a29SMatthew G. Knepley       PetscScalar *al = &(*a)[cind * totDimAux];
387807218a29SMatthew G. Knepley       PetscInt     subcell;
387907218a29SMatthew G. Knepley 
388007218a29SMatthew G. Knepley       PetscCall(DMGetEnclosurePoint(plexA, dm, encAux, cell, &subcell));
388107218a29SMatthew G. Knepley       PetscCall(DMPlexVecGetClosure(plexA, sectionAux, locA, subcell, &Nx, &x));
388207218a29SMatthew G. Knepley       PetscCheck(Nx == totDimAux, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "Closure size %" PetscInt_FMT " for subcell %" PetscInt_FMT "does not match DS size %" PetscInt_FMT, Nx, subcell, totDimAux);
388307218a29SMatthew G. Knepley       for (PetscInt i = 0; i < totDimAux; ++i) al[i] = x[i];
388407218a29SMatthew G. Knepley       PetscCall(DMPlexVecRestoreClosure(plexA, sectionAux, locA, subcell, &Nx, &x));
388507218a29SMatthew G. Knepley     }
388607218a29SMatthew G. Knepley   }
388707218a29SMatthew G. Knepley   PetscCall(DMDestroy(&plex));
388807218a29SMatthew G. Knepley   PetscCall(DMDestroy(&plexA));
388907218a29SMatthew G. Knepley   PetscCall(ISRestorePointRange(cellIS, &cStart, &cEnd, &cells));
389007218a29SMatthew G. Knepley   PetscFunctionReturn(PETSC_SUCCESS);
389107218a29SMatthew G. Knepley }
389207218a29SMatthew G. Knepley 
389307218a29SMatthew G. Knepley /*
38943e2b0218SMatthew G. Knepley   DMPlexGetHybridFields - Get the field values for the negative side (s = 0) and positive side (s = 1) of the interface
389507218a29SMatthew G. Knepley 
389607218a29SMatthew G. Knepley   Input Parameters:
389707218a29SMatthew G. Knepley + dm      - The full domain DM
389807218a29SMatthew G. Knepley . dmX     - An array of DM for the field, say an auxiliary DM, indexed by s
389907218a29SMatthew G. Knepley . dsX     - An array of PetscDS for the field, indexed by s
390007218a29SMatthew G. Knepley . cellIS  - The interface cells for which we want values
390107218a29SMatthew G. Knepley . locX    - An array of local vectors with the field values, indexed by s
390207218a29SMatthew G. Knepley - useCell - Flag to have values come from neighboring cell rather than endcap face
390307218a29SMatthew G. Knepley 
390407218a29SMatthew G. Knepley   Output Parameter:
390507218a29SMatthew G. Knepley . x       - An array of field values, indexed by s
390607218a29SMatthew G. Knepley 
390707218a29SMatthew G. Knepley   Note:
390876fbde31SPierre Jolivet   The arrays in `x` will be allocated using `DMGetWorkArray()`, and must be returned using `DMPlexRestoreHybridFields()`.
390907218a29SMatthew G. Knepley 
391007218a29SMatthew G. Knepley   Level: advanced
391107218a29SMatthew G. Knepley 
391276fbde31SPierre Jolivet .seealso: `DMPlexRestoreHybridFields()`, `DMGetWorkArray()`
391307218a29SMatthew G. Knepley */
391407218a29SMatthew G. Knepley static PetscErrorCode DMPlexGetHybridFields(DM dm, DM dmX[], PetscDS dsX[], IS cellIS, Vec locX[], PetscBool useCell, PetscScalar *x[])
391507218a29SMatthew G. Knepley {
391607218a29SMatthew G. Knepley   DM              plexX[2];
391707218a29SMatthew G. Knepley   DMEnclosureType encX[2];
391807218a29SMatthew G. Knepley   PetscSection    sectionX[2];
391907218a29SMatthew G. Knepley   const PetscInt *cells;
392007218a29SMatthew G. Knepley   PetscInt        cStart, cEnd, numCells, c, s, totDimX[2];
392107218a29SMatthew G. Knepley 
392207218a29SMatthew G. Knepley   PetscFunctionBegin;
39234f572ea9SToby Isaac   PetscAssertPointer(locX, 5);
392407218a29SMatthew G. Knepley   if (!locX[0] || !locX[1]) PetscFunctionReturn(PETSC_SUCCESS);
39254f572ea9SToby Isaac   PetscAssertPointer(dmX, 2);
39264f572ea9SToby Isaac   PetscAssertPointer(dsX, 3);
392707218a29SMatthew G. Knepley   PetscValidHeaderSpecific(cellIS, IS_CLASSID, 4);
39284f572ea9SToby Isaac   PetscAssertPointer(x, 7);
39299566063dSJacob Faibussowitsch   PetscCall(ISGetPointRange(cellIS, &cStart, &cEnd, &cells));
39306528b96dSMatthew G. Knepley   numCells = cEnd - cStart;
3931148442b3SMatthew G. Knepley   for (s = 0; s < 2; ++s) {
393207218a29SMatthew G. Knepley     PetscValidHeaderSpecific(dmX[s], DM_CLASSID, 2);
393307218a29SMatthew G. Knepley     PetscValidHeaderSpecific(dsX[s], PETSCDS_CLASSID, 3);
393407218a29SMatthew G. Knepley     PetscValidHeaderSpecific(locX[s], VEC_CLASSID, 5);
393507218a29SMatthew G. Knepley     PetscCall(DMPlexConvertPlex(dmX[s], &plexX[s], PETSC_FALSE));
393607218a29SMatthew G. Knepley     PetscCall(DMGetEnclosureRelation(dmX[s], dm, &encX[s]));
393707218a29SMatthew G. Knepley     PetscCall(DMGetLocalSection(dmX[s], &sectionX[s]));
393807218a29SMatthew G. Knepley     PetscCall(PetscDSGetTotalDimension(dsX[s], &totDimX[s]));
393907218a29SMatthew G. Knepley     PetscCall(DMGetWorkArray(dmX[s], numCells * totDimX[s], MPIU_SCALAR, &x[s]));
394004c51a94SMatthew G. Knepley   }
3941148442b3SMatthew G. Knepley   for (c = cStart; c < cEnd; ++c) {
39426528b96dSMatthew G. Knepley     const PetscInt  cell = cells ? cells[c] : c;
39436528b96dSMatthew G. Knepley     const PetscInt  cind = c - cStart;
39446528b96dSMatthew G. Knepley     const PetscInt *cone, *ornt;
39456528b96dSMatthew G. Knepley 
39469566063dSJacob Faibussowitsch     PetscCall(DMPlexGetCone(dm, cell, &cone));
39479566063dSJacob Faibussowitsch     PetscCall(DMPlexGetConeOrientation(dm, cell, &ornt));
394807218a29SMatthew G. Knepley     //PetscCheck(!ornt[0], PETSC_COMM_SELF, PETSC_ERR_SUP, "Face %" PetscInt_FMT " in hybrid cell %" PetscInt_FMT " has orientation %" PetscInt_FMT " != 0", cone[0], cell, ornt[0]);
3949148442b3SMatthew G. Knepley     for (s = 0; s < 2; ++s) {
395007218a29SMatthew G. Knepley       const PetscInt tdX     = totDimX[s];
395107218a29SMatthew G. Knepley       PetscScalar   *closure = NULL, *xl = &x[s][cind * tdX];
395207218a29SMatthew G. Knepley       PetscInt       face = cone[s], point = face, subpoint, Nx, i;
395307218a29SMatthew G. Knepley 
395407218a29SMatthew G. Knepley       if (useCell) {
39555fedec97SMatthew G. Knepley         const PetscInt *support;
395607218a29SMatthew G. Knepley         PetscInt        ssize;
39576528b96dSMatthew G. Knepley 
395807218a29SMatthew G. Knepley         PetscCall(DMPlexGetSupport(dm, face, &support));
395907218a29SMatthew G. Knepley         PetscCall(DMPlexGetSupportSize(dm, face, &ssize));
396007218a29SMatthew G. Knepley         PetscCheck(ssize == 2, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Face %" PetscInt_FMT " from cell %" PetscInt_FMT " has support size %" PetscInt_FMT " != 2", face, cell, ssize);
396107218a29SMatthew G. Knepley         if (support[0] == cell) point = support[1];
396207218a29SMatthew G. Knepley         else if (support[1] == cell) point = support[0];
396307218a29SMatthew G. Knepley         else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Face %" PetscInt_FMT " does not have cell %" PetscInt_FMT " in its support", face, cell);
396407218a29SMatthew G. Knepley       }
396507218a29SMatthew G. Knepley       PetscCall(DMGetEnclosurePoint(plexX[s], dm, encX[s], point, &subpoint));
3966e8e188d2SZach Atkins       PetscCall(DMPlexVecGetOrientedClosure_Internal(plexX[s], sectionX[s], PETSC_FALSE, locX[s], subpoint, ornt[s], &Nx, &closure));
396707218a29SMatthew G. Knepley       PetscCheck(Nx == tdX, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "Closure size %" PetscInt_FMT " for subpoint %" PetscInt_FMT " does not match DS size %" PetscInt_FMT, Nx, subpoint, tdX);
396807218a29SMatthew G. Knepley       for (i = 0; i < Nx; ++i) xl[i] = closure[i];
396907218a29SMatthew G. Knepley       PetscCall(DMPlexVecRestoreClosure(plexX[s], sectionX[s], locX[s], subpoint, &Nx, &closure));
39706528b96dSMatthew G. Knepley     }
39716528b96dSMatthew G. Knepley   }
397207218a29SMatthew G. Knepley   for (s = 0; s < 2; ++s) PetscCall(DMDestroy(&plexX[s]));
39739566063dSJacob Faibussowitsch   PetscCall(ISRestorePointRange(cellIS, &cStart, &cEnd, &cells));
39743ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
39756528b96dSMatthew G. Knepley }
39766528b96dSMatthew G. Knepley 
397707218a29SMatthew G. Knepley static PetscErrorCode DMPlexRestoreHybridFields(DM dm, DM dmX[], PetscDS dsX[], IS cellIS, Vec locX[], PetscBool useCell, PetscScalar *x[])
3978d71ae5a4SJacob Faibussowitsch {
39796528b96dSMatthew G. Knepley   PetscFunctionBegin;
398007218a29SMatthew G. Knepley   if (!locX[0] || !locX[1]) PetscFunctionReturn(PETSC_SUCCESS);
398107218a29SMatthew G. Knepley   PetscCall(DMRestoreWorkArray(dmX[0], 0, MPIU_SCALAR, &x[0]));
398207218a29SMatthew G. Knepley   PetscCall(DMRestoreWorkArray(dmX[1], 0, MPIU_SCALAR, &x[1]));
39833ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
39846528b96dSMatthew G. Knepley }
39856528b96dSMatthew G. Knepley 
39862f856554SMatthew G. Knepley /*@C
39872f856554SMatthew G. Knepley   DMPlexGetFaceFields - Retrieve the field values values for a chunk of faces
39882f856554SMatthew G. Knepley 
39892f856554SMatthew G. Knepley   Input Parameters:
3990a1cb98faSBarry Smith + dm           - The `DM`
39912f856554SMatthew G. Knepley . fStart       - The first face to include
39922f856554SMatthew G. Knepley . fEnd         - The first face to exclude
39932f856554SMatthew G. Knepley . locX         - A local vector with the solution fields
39942f856554SMatthew G. Knepley . locX_t       - A local vector with solution field time derivatives, or NULL
39952f856554SMatthew G. Knepley . faceGeometry - A local vector with face geometry
39962f856554SMatthew G. Knepley . cellGeometry - A local vector with cell geometry
399760225df5SJacob Faibussowitsch - locGrad      - A local vector with field gradients, or NULL
39982f856554SMatthew G. Knepley 
39992f856554SMatthew G. Knepley   Output Parameters:
40002f856554SMatthew G. Knepley + Nface - The number of faces with field values
40012f856554SMatthew G. Knepley . uL    - The field values at the left side of the face
40022f856554SMatthew G. Knepley - uR    - The field values at the right side of the face
40032f856554SMatthew G. Knepley 
40042f856554SMatthew G. Knepley   Level: developer
40052f856554SMatthew G. Knepley 
40061cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexGetCellFields()`
40072f856554SMatthew G. Knepley @*/
4008d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexGetFaceFields(DM dm, PetscInt fStart, PetscInt fEnd, Vec locX, Vec locX_t, Vec faceGeometry, Vec cellGeometry, Vec locGrad, PetscInt *Nface, PetscScalar **uL, PetscScalar **uR)
4009d71ae5a4SJacob Faibussowitsch {
40102f856554SMatthew G. Knepley   DM                 dmFace, dmCell, dmGrad = NULL;
40112f856554SMatthew G. Knepley   PetscSection       section;
40122f856554SMatthew G. Knepley   PetscDS            prob;
40132f856554SMatthew G. Knepley   DMLabel            ghostLabel;
40142f856554SMatthew G. Knepley   const PetscScalar *facegeom, *cellgeom, *x, *lgrad;
40152f856554SMatthew G. Knepley   PetscBool         *isFE;
40162f856554SMatthew G. Knepley   PetscInt           dim, Nf, f, Nc, numFaces = fEnd - fStart, iface, face;
40172f856554SMatthew G. Knepley 
40182f856554SMatthew G. Knepley   PetscFunctionBegin;
40192f856554SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
40202f856554SMatthew G. Knepley   PetscValidHeaderSpecific(locX, VEC_CLASSID, 4);
4021ad540459SPierre Jolivet   if (locX_t) PetscValidHeaderSpecific(locX_t, VEC_CLASSID, 5);
40222f856554SMatthew G. Knepley   PetscValidHeaderSpecific(faceGeometry, VEC_CLASSID, 6);
40232f856554SMatthew G. Knepley   PetscValidHeaderSpecific(cellGeometry, VEC_CLASSID, 7);
4024ad540459SPierre Jolivet   if (locGrad) PetscValidHeaderSpecific(locGrad, VEC_CLASSID, 8);
40254f572ea9SToby Isaac   PetscAssertPointer(uL, 10);
40264f572ea9SToby Isaac   PetscAssertPointer(uR, 11);
40279566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dm, &dim));
40289566063dSJacob Faibussowitsch   PetscCall(DMGetDS(dm, &prob));
40299566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dm, &section));
40309566063dSJacob Faibussowitsch   PetscCall(PetscDSGetNumFields(prob, &Nf));
40319566063dSJacob Faibussowitsch   PetscCall(PetscDSGetTotalComponents(prob, &Nc));
40329566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(Nf, &isFE));
40332f856554SMatthew G. Knepley   for (f = 0; f < Nf; ++f) {
40342f856554SMatthew G. Knepley     PetscObject  obj;
40352f856554SMatthew G. Knepley     PetscClassId id;
40362f856554SMatthew G. Knepley 
40379566063dSJacob Faibussowitsch     PetscCall(PetscDSGetDiscretization(prob, f, &obj));
40389566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetClassId(obj, &id));
40399371c9d4SSatish Balay     if (id == PETSCFE_CLASSID) {
40409371c9d4SSatish Balay       isFE[f] = PETSC_TRUE;
40419371c9d4SSatish Balay     } else if (id == PETSCFV_CLASSID) {
40429371c9d4SSatish Balay       isFE[f] = PETSC_FALSE;
40439371c9d4SSatish Balay     } else {
40449371c9d4SSatish Balay       isFE[f] = PETSC_FALSE;
40459371c9d4SSatish Balay     }
40462f856554SMatthew G. Knepley   }
40479566063dSJacob Faibussowitsch   PetscCall(DMGetLabel(dm, "ghost", &ghostLabel));
40489566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(locX, &x));
40499566063dSJacob Faibussowitsch   PetscCall(VecGetDM(faceGeometry, &dmFace));
40509566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(faceGeometry, &facegeom));
40519566063dSJacob Faibussowitsch   PetscCall(VecGetDM(cellGeometry, &dmCell));
40529566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(cellGeometry, &cellgeom));
40532f856554SMatthew G. Knepley   if (locGrad) {
40549566063dSJacob Faibussowitsch     PetscCall(VecGetDM(locGrad, &dmGrad));
40559566063dSJacob Faibussowitsch     PetscCall(VecGetArrayRead(locGrad, &lgrad));
40562f856554SMatthew G. Knepley   }
40579566063dSJacob Faibussowitsch   PetscCall(DMGetWorkArray(dm, numFaces * Nc, MPIU_SCALAR, uL));
40589566063dSJacob Faibussowitsch   PetscCall(DMGetWorkArray(dm, numFaces * Nc, MPIU_SCALAR, uR));
40592f856554SMatthew G. Knepley   /* Right now just eat the extra work for FE (could make a cell loop) */
40602f856554SMatthew G. Knepley   for (face = fStart, iface = 0; face < fEnd; ++face) {
40612f856554SMatthew G. Knepley     const PetscInt  *cells;
40622f856554SMatthew G. Knepley     PetscFVFaceGeom *fg;
40632f856554SMatthew G. Knepley     PetscFVCellGeom *cgL, *cgR;
40642f856554SMatthew G. Knepley     PetscScalar     *xL, *xR, *gL, *gR;
40652f856554SMatthew G. Knepley     PetscScalar     *uLl = *uL, *uRl = *uR;
40662f856554SMatthew G. Knepley     PetscInt         ghost, nsupp, nchild;
40672f856554SMatthew G. Knepley 
40689566063dSJacob Faibussowitsch     PetscCall(DMLabelGetValue(ghostLabel, face, &ghost));
40699566063dSJacob Faibussowitsch     PetscCall(DMPlexGetSupportSize(dm, face, &nsupp));
40709566063dSJacob Faibussowitsch     PetscCall(DMPlexGetTreeChildren(dm, face, &nchild, NULL));
40712f856554SMatthew G. Knepley     if (ghost >= 0 || nsupp > 2 || nchild > 0) continue;
40729566063dSJacob Faibussowitsch     PetscCall(DMPlexPointLocalRead(dmFace, face, facegeom, &fg));
40739566063dSJacob Faibussowitsch     PetscCall(DMPlexGetSupport(dm, face, &cells));
40749566063dSJacob Faibussowitsch     PetscCall(DMPlexPointLocalRead(dmCell, cells[0], cellgeom, &cgL));
40759566063dSJacob Faibussowitsch     PetscCall(DMPlexPointLocalRead(dmCell, cells[1], cellgeom, &cgR));
40762f856554SMatthew G. Knepley     for (f = 0; f < Nf; ++f) {
40772f856554SMatthew G. Knepley       PetscInt off;
40782f856554SMatthew G. Knepley 
40799566063dSJacob Faibussowitsch       PetscCall(PetscDSGetComponentOffset(prob, f, &off));
40802f856554SMatthew G. Knepley       if (isFE[f]) {
40812f856554SMatthew G. Knepley         const PetscInt *cone;
40822f856554SMatthew G. Knepley         PetscInt        comp, coneSizeL, coneSizeR, faceLocL, faceLocR, ldof, rdof, d;
40832f856554SMatthew G. Knepley 
40842f856554SMatthew G. Knepley         xL = xR = NULL;
40859566063dSJacob Faibussowitsch         PetscCall(PetscSectionGetFieldComponents(section, f, &comp));
4086835f2295SStefano Zampini         PetscCall(DMPlexVecGetClosure(dm, section, locX, cells[0], &ldof, &xL));
4087835f2295SStefano Zampini         PetscCall(DMPlexVecGetClosure(dm, section, locX, cells[1], &rdof, &xR));
40889566063dSJacob Faibussowitsch         PetscCall(DMPlexGetCone(dm, cells[0], &cone));
40899566063dSJacob Faibussowitsch         PetscCall(DMPlexGetConeSize(dm, cells[0], &coneSizeL));
40909371c9d4SSatish Balay         for (faceLocL = 0; faceLocL < coneSizeL; ++faceLocL)
40919371c9d4SSatish Balay           if (cone[faceLocL] == face) break;
40929566063dSJacob Faibussowitsch         PetscCall(DMPlexGetCone(dm, cells[1], &cone));
40939566063dSJacob Faibussowitsch         PetscCall(DMPlexGetConeSize(dm, cells[1], &coneSizeR));
40949371c9d4SSatish Balay         for (faceLocR = 0; faceLocR < coneSizeR; ++faceLocR)
40959371c9d4SSatish Balay           if (cone[faceLocR] == face) break;
40961dca8a05SBarry Smith         PetscCheck(faceLocL != coneSizeL || faceLocR != coneSizeR, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Could not find face %" PetscInt_FMT " in cone of cell %" PetscInt_FMT " or cell %" PetscInt_FMT, face, cells[0], cells[1]);
40972f856554SMatthew G. Knepley         /* Check that FEM field has values in the right cell (sometimes its an FV ghost cell) */
40982f856554SMatthew G. Knepley         /* TODO: this is a hack that might not be right for nonconforming */
40992f856554SMatthew G. Knepley         if (faceLocL < coneSizeL) {
41009566063dSJacob Faibussowitsch           PetscCall(PetscFEEvaluateFaceFields_Internal(prob, f, faceLocL, xL, &uLl[iface * Nc + off]));
41019566063dSJacob Faibussowitsch           if (rdof == ldof && faceLocR < coneSizeR) PetscCall(PetscFEEvaluateFaceFields_Internal(prob, f, faceLocR, xR, &uRl[iface * Nc + off]));
41022f856554SMatthew G. Knepley           else {
41039371c9d4SSatish Balay             for (d = 0; d < comp; ++d) uRl[iface * Nc + off + d] = uLl[iface * Nc + off + d];
41049371c9d4SSatish Balay           }
41059371c9d4SSatish Balay         } else {
41069566063dSJacob Faibussowitsch           PetscCall(PetscFEEvaluateFaceFields_Internal(prob, f, faceLocR, xR, &uRl[iface * Nc + off]));
41079566063dSJacob Faibussowitsch           PetscCall(PetscSectionGetFieldComponents(section, f, &comp));
41082f856554SMatthew G. Knepley           for (d = 0; d < comp; ++d) uLl[iface * Nc + off + d] = uRl[iface * Nc + off + d];
41092f856554SMatthew G. Knepley         }
4110835f2295SStefano Zampini         PetscCall(DMPlexVecRestoreClosure(dm, section, locX, cells[0], &ldof, &xL));
4111835f2295SStefano Zampini         PetscCall(DMPlexVecRestoreClosure(dm, section, locX, cells[1], &rdof, &xR));
41122f856554SMatthew G. Knepley       } else {
41132f856554SMatthew G. Knepley         PetscFV  fv;
41142f856554SMatthew G. Knepley         PetscInt numComp, c;
41152f856554SMatthew G. Knepley 
41169566063dSJacob Faibussowitsch         PetscCall(PetscDSGetDiscretization(prob, f, (PetscObject *)&fv));
41179566063dSJacob Faibussowitsch         PetscCall(PetscFVGetNumComponents(fv, &numComp));
41189566063dSJacob Faibussowitsch         PetscCall(DMPlexPointLocalFieldRead(dm, cells[0], f, x, &xL));
41199566063dSJacob Faibussowitsch         PetscCall(DMPlexPointLocalFieldRead(dm, cells[1], f, x, &xR));
41202f856554SMatthew G. Knepley         if (dmGrad) {
41212f856554SMatthew G. Knepley           PetscReal dxL[3], dxR[3];
41222f856554SMatthew G. Knepley 
41239566063dSJacob Faibussowitsch           PetscCall(DMPlexPointLocalRead(dmGrad, cells[0], lgrad, &gL));
41249566063dSJacob Faibussowitsch           PetscCall(DMPlexPointLocalRead(dmGrad, cells[1], lgrad, &gR));
41252f856554SMatthew G. Knepley           DMPlex_WaxpyD_Internal(dim, -1, cgL->centroid, fg->centroid, dxL);
41262f856554SMatthew G. Knepley           DMPlex_WaxpyD_Internal(dim, -1, cgR->centroid, fg->centroid, dxR);
41272f856554SMatthew G. Knepley           for (c = 0; c < numComp; ++c) {
41282f856554SMatthew G. Knepley             uLl[iface * Nc + off + c] = xL[c] + DMPlex_DotD_Internal(dim, &gL[c * dim], dxL);
41292f856554SMatthew G. Knepley             uRl[iface * Nc + off + c] = xR[c] + DMPlex_DotD_Internal(dim, &gR[c * dim], dxR);
41302f856554SMatthew G. Knepley           }
41312f856554SMatthew G. Knepley         } else {
41322f856554SMatthew G. Knepley           for (c = 0; c < numComp; ++c) {
41332f856554SMatthew G. Knepley             uLl[iface * Nc + off + c] = xL[c];
41342f856554SMatthew G. Knepley             uRl[iface * Nc + off + c] = xR[c];
41352f856554SMatthew G. Knepley           }
41362f856554SMatthew G. Knepley         }
41372f856554SMatthew G. Knepley       }
41382f856554SMatthew G. Knepley     }
41392f856554SMatthew G. Knepley     ++iface;
41402f856554SMatthew G. Knepley   }
41412f856554SMatthew G. Knepley   *Nface = iface;
41429566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(locX, &x));
41439566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(faceGeometry, &facegeom));
41449566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(cellGeometry, &cellgeom));
414548a46eb9SPierre Jolivet   if (locGrad) PetscCall(VecRestoreArrayRead(locGrad, &lgrad));
41469566063dSJacob Faibussowitsch   PetscCall(PetscFree(isFE));
41473ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
41482f856554SMatthew G. Knepley }
41492f856554SMatthew G. Knepley 
41502f856554SMatthew G. Knepley /*@C
41512f856554SMatthew G. Knepley   DMPlexRestoreFaceFields - Restore the field values values for a chunk of faces
41522f856554SMatthew G. Knepley 
41532f856554SMatthew G. Knepley   Input Parameters:
4154a1cb98faSBarry Smith + dm           - The `DM`
41552f856554SMatthew G. Knepley . fStart       - The first face to include
41562f856554SMatthew G. Knepley . fEnd         - The first face to exclude
41572f856554SMatthew G. Knepley . locX         - A local vector with the solution fields
41582f856554SMatthew G. Knepley . locX_t       - A local vector with solution field time derivatives, or NULL
41592f856554SMatthew G. Knepley . faceGeometry - A local vector with face geometry
41602f856554SMatthew G. Knepley . cellGeometry - A local vector with cell geometry
416160225df5SJacob Faibussowitsch - locGrad      - A local vector with field gradients, or NULL
41622f856554SMatthew G. Knepley 
41632f856554SMatthew G. Knepley   Output Parameters:
41642f856554SMatthew G. Knepley + Nface - The number of faces with field values
41652f856554SMatthew G. Knepley . uL    - The field values at the left side of the face
41662f856554SMatthew G. Knepley - uR    - The field values at the right side of the face
41672f856554SMatthew G. Knepley 
41682f856554SMatthew G. Knepley   Level: developer
41692f856554SMatthew G. Knepley 
41701cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexGetFaceFields()`
41712f856554SMatthew G. Knepley @*/
4172d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexRestoreFaceFields(DM dm, PetscInt fStart, PetscInt fEnd, Vec locX, Vec locX_t, Vec faceGeometry, Vec cellGeometry, Vec locGrad, PetscInt *Nface, PetscScalar **uL, PetscScalar **uR)
4173d71ae5a4SJacob Faibussowitsch {
41742f856554SMatthew G. Knepley   PetscFunctionBegin;
41759566063dSJacob Faibussowitsch   PetscCall(DMRestoreWorkArray(dm, 0, MPIU_SCALAR, uL));
41769566063dSJacob Faibussowitsch   PetscCall(DMRestoreWorkArray(dm, 0, MPIU_SCALAR, uR));
41773ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
41782f856554SMatthew G. Knepley }
41792f856554SMatthew G. Knepley 
41802f856554SMatthew G. Knepley /*@C
41812f856554SMatthew G. Knepley   DMPlexGetFaceGeometry - Retrieve the geometric values for a chunk of faces
41822f856554SMatthew G. Knepley 
41832f856554SMatthew G. Knepley   Input Parameters:
4184a1cb98faSBarry Smith + dm           - The `DM`
41852f856554SMatthew G. Knepley . fStart       - The first face to include
41862f856554SMatthew G. Knepley . fEnd         - The first face to exclude
41872f856554SMatthew G. Knepley . faceGeometry - A local vector with face geometry
41882f856554SMatthew G. Knepley - cellGeometry - A local vector with cell geometry
41892f856554SMatthew G. Knepley 
41902f856554SMatthew G. Knepley   Output Parameters:
41912f856554SMatthew G. Knepley + Nface - The number of faces with field values
41922f856554SMatthew G. Knepley . fgeom - The extract the face centroid and normal
41932f856554SMatthew G. Knepley - vol   - The cell volume
41942f856554SMatthew G. Knepley 
41952f856554SMatthew G. Knepley   Level: developer
41962f856554SMatthew G. Knepley 
41971cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexGetCellFields()`
41982f856554SMatthew G. Knepley @*/
4199d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexGetFaceGeometry(DM dm, PetscInt fStart, PetscInt fEnd, Vec faceGeometry, Vec cellGeometry, PetscInt *Nface, PetscFVFaceGeom **fgeom, PetscReal **vol)
4200d71ae5a4SJacob Faibussowitsch {
42012f856554SMatthew G. Knepley   DM                 dmFace, dmCell;
42022f856554SMatthew G. Knepley   DMLabel            ghostLabel;
42032f856554SMatthew G. Knepley   const PetscScalar *facegeom, *cellgeom;
42042f856554SMatthew G. Knepley   PetscInt           dim, numFaces = fEnd - fStart, iface, face;
42052f856554SMatthew G. Knepley 
42062f856554SMatthew G. Knepley   PetscFunctionBegin;
42072f856554SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
42082f856554SMatthew G. Knepley   PetscValidHeaderSpecific(faceGeometry, VEC_CLASSID, 4);
42092f856554SMatthew G. Knepley   PetscValidHeaderSpecific(cellGeometry, VEC_CLASSID, 5);
42104f572ea9SToby Isaac   PetscAssertPointer(fgeom, 7);
42114f572ea9SToby Isaac   PetscAssertPointer(vol, 8);
42129566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dm, &dim));
42139566063dSJacob Faibussowitsch   PetscCall(DMGetLabel(dm, "ghost", &ghostLabel));
42149566063dSJacob Faibussowitsch   PetscCall(VecGetDM(faceGeometry, &dmFace));
42159566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(faceGeometry, &facegeom));
42169566063dSJacob Faibussowitsch   PetscCall(VecGetDM(cellGeometry, &dmCell));
42179566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(cellGeometry, &cellgeom));
42189566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(numFaces, fgeom));
42199566063dSJacob Faibussowitsch   PetscCall(DMGetWorkArray(dm, numFaces * 2, MPIU_SCALAR, vol));
42202f856554SMatthew G. Knepley   for (face = fStart, iface = 0; face < fEnd; ++face) {
42212f856554SMatthew G. Knepley     const PetscInt  *cells;
42222f856554SMatthew G. Knepley     PetscFVFaceGeom *fg;
42232f856554SMatthew G. Knepley     PetscFVCellGeom *cgL, *cgR;
42242f856554SMatthew G. Knepley     PetscFVFaceGeom *fgeoml = *fgeom;
42252f856554SMatthew G. Knepley     PetscReal       *voll   = *vol;
42262f856554SMatthew G. Knepley     PetscInt         ghost, d, nchild, nsupp;
42272f856554SMatthew G. Knepley 
42289566063dSJacob Faibussowitsch     PetscCall(DMLabelGetValue(ghostLabel, face, &ghost));
42299566063dSJacob Faibussowitsch     PetscCall(DMPlexGetSupportSize(dm, face, &nsupp));
42309566063dSJacob Faibussowitsch     PetscCall(DMPlexGetTreeChildren(dm, face, &nchild, NULL));
42312f856554SMatthew G. Knepley     if (ghost >= 0 || nsupp > 2 || nchild > 0) continue;
42329566063dSJacob Faibussowitsch     PetscCall(DMPlexPointLocalRead(dmFace, face, facegeom, &fg));
42339566063dSJacob Faibussowitsch     PetscCall(DMPlexGetSupport(dm, face, &cells));
42349566063dSJacob Faibussowitsch     PetscCall(DMPlexPointLocalRead(dmCell, cells[0], cellgeom, &cgL));
42359566063dSJacob Faibussowitsch     PetscCall(DMPlexPointLocalRead(dmCell, cells[1], cellgeom, &cgR));
42362f856554SMatthew G. Knepley     for (d = 0; d < dim; ++d) {
42372f856554SMatthew G. Knepley       fgeoml[iface].centroid[d] = fg->centroid[d];
42382f856554SMatthew G. Knepley       fgeoml[iface].normal[d]   = fg->normal[d];
42392f856554SMatthew G. Knepley     }
42402f856554SMatthew G. Knepley     voll[iface * 2 + 0] = cgL->volume;
42412f856554SMatthew G. Knepley     voll[iface * 2 + 1] = cgR->volume;
42422f856554SMatthew G. Knepley     ++iface;
42432f856554SMatthew G. Knepley   }
42442f856554SMatthew G. Knepley   *Nface = iface;
42459566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(faceGeometry, &facegeom));
42469566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(cellGeometry, &cellgeom));
42473ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
42482f856554SMatthew G. Knepley }
42492f856554SMatthew G. Knepley 
42502f856554SMatthew G. Knepley /*@C
42512f856554SMatthew G. Knepley   DMPlexRestoreFaceGeometry - Restore the field values values for a chunk of faces
42522f856554SMatthew G. Knepley 
42532f856554SMatthew G. Knepley   Input Parameters:
4254a1cb98faSBarry Smith + dm           - The `DM`
42552f856554SMatthew G. Knepley . fStart       - The first face to include
42562f856554SMatthew G. Knepley . fEnd         - The first face to exclude
42572f856554SMatthew G. Knepley . faceGeometry - A local vector with face geometry
42582f856554SMatthew G. Knepley - cellGeometry - A local vector with cell geometry
42592f856554SMatthew G. Knepley 
42602f856554SMatthew G. Knepley   Output Parameters:
42612f856554SMatthew G. Knepley + Nface - The number of faces with field values
42622f856554SMatthew G. Knepley . fgeom - The extract the face centroid and normal
42632f856554SMatthew G. Knepley - vol   - The cell volume
42642f856554SMatthew G. Knepley 
42652f856554SMatthew G. Knepley   Level: developer
42662f856554SMatthew G. Knepley 
42671cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexGetFaceFields()`
42682f856554SMatthew G. Knepley @*/
4269d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexRestoreFaceGeometry(DM dm, PetscInt fStart, PetscInt fEnd, Vec faceGeometry, Vec cellGeometry, PetscInt *Nface, PetscFVFaceGeom **fgeom, PetscReal **vol)
4270d71ae5a4SJacob Faibussowitsch {
42712f856554SMatthew G. Knepley   PetscFunctionBegin;
42729566063dSJacob Faibussowitsch   PetscCall(PetscFree(*fgeom));
42739566063dSJacob Faibussowitsch   PetscCall(DMRestoreWorkArray(dm, 0, MPIU_REAL, vol));
42743ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
42752f856554SMatthew G. Knepley }
42762f856554SMatthew G. Knepley 
4277d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSNESGetFEGeom(DMField coordField, IS pointIS, PetscQuadrature quad, PetscBool faceData, PetscFEGeom **geom)
4278d71ae5a4SJacob Faibussowitsch {
4279a1cf66bbSMatthew G. Knepley   char           composeStr[33] = {0};
4280a1cf66bbSMatthew G. Knepley   PetscObjectId  id;
4281a1cf66bbSMatthew G. Knepley   PetscContainer container;
4282a1cf66bbSMatthew G. Knepley 
4283a1cf66bbSMatthew G. Knepley   PetscFunctionBegin;
42849566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetId((PetscObject)quad, &id));
428563a3b9bcSJacob Faibussowitsch   PetscCall(PetscSNPrintf(composeStr, 32, "DMSNESGetFEGeom_%" PetscInt64_FMT "\n", id));
42869566063dSJacob Faibussowitsch   PetscCall(PetscObjectQuery((PetscObject)pointIS, composeStr, (PetscObject *)&container));
4287a1cf66bbSMatthew G. Knepley   if (container) {
42889566063dSJacob Faibussowitsch     PetscCall(PetscContainerGetPointer(container, (void **)geom));
4289a1cf66bbSMatthew G. Knepley   } else {
42909566063dSJacob Faibussowitsch     PetscCall(DMFieldCreateFEGeom(coordField, pointIS, quad, faceData, geom));
42919566063dSJacob Faibussowitsch     PetscCall(PetscContainerCreate(PETSC_COMM_SELF, &container));
42929566063dSJacob Faibussowitsch     PetscCall(PetscContainerSetPointer(container, (void *)*geom));
429349abdd8aSBarry Smith     PetscCall(PetscContainerSetCtxDestroy(container, PetscContainerCtxDestroy_PetscFEGeom));
42949566063dSJacob Faibussowitsch     PetscCall(PetscObjectCompose((PetscObject)pointIS, composeStr, (PetscObject)container));
42959566063dSJacob Faibussowitsch     PetscCall(PetscContainerDestroy(&container));
4296a1cf66bbSMatthew G. Knepley   }
42973ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
4298a1cf66bbSMatthew G. Knepley }
4299a1cf66bbSMatthew G. Knepley 
4300d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSNESRestoreFEGeom(DMField coordField, IS pointIS, PetscQuadrature quad, PetscBool faceData, PetscFEGeom **geom)
4301d71ae5a4SJacob Faibussowitsch {
4302a1cf66bbSMatthew G. Knepley   PetscFunctionBegin;
4303a1cf66bbSMatthew G. Knepley   *geom = NULL;
43043ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
4305a1cf66bbSMatthew G. Knepley }
4306a1cf66bbSMatthew G. Knepley 
4307d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeResidual_Patch_Internal(DM dm, PetscSection section, IS cellIS, PetscReal t, Vec locX, Vec locX_t, Vec locF, void *user)
4308d71ae5a4SJacob Faibussowitsch {
430992d50984SMatthew G. Knepley   DM_Plex        *mesh       = (DM_Plex *)dm->data;
431092d50984SMatthew G. Knepley   const char     *name       = "Residual";
431192d50984SMatthew G. Knepley   DM              dmAux      = NULL;
431292d50984SMatthew G. Knepley   DMLabel         ghostLabel = NULL;
431392d50984SMatthew G. Knepley   PetscDS         prob       = NULL;
431492d50984SMatthew G. Knepley   PetscDS         probAux    = NULL;
431592d50984SMatthew G. Knepley   PetscBool       useFEM     = PETSC_FALSE;
431692d50984SMatthew G. Knepley   PetscBool       isImplicit = (locX_t || t == PETSC_MIN_REAL) ? PETSC_TRUE : PETSC_FALSE;
431792d50984SMatthew G. Knepley   DMField         coordField = NULL;
4318c0006e53SPatrick Farrell   Vec             locA;
4319c0006e53SPatrick Farrell   PetscScalar    *u = NULL, *u_t, *a, *uL = NULL, *uR = NULL;
432092d50984SMatthew G. Knepley   IS              chunkIS;
432192d50984SMatthew G. Knepley   const PetscInt *cells;
432292d50984SMatthew G. Knepley   PetscInt        cStart, cEnd, numCells;
4323364207b6SKarl Rupp   PetscInt        Nf, f, totDim, totDimAux, numChunks, cellChunkSize, chunk, fStart, fEnd;
43241690c2aeSBarry Smith   PetscInt        maxDegree = PETSC_INT_MAX;
432506ad1575SMatthew G. Knepley   PetscFormKey    key;
432692d50984SMatthew G. Knepley   PetscQuadrature affineQuad = NULL, *quads = NULL;
432792d50984SMatthew G. Knepley   PetscFEGeom    *affineGeom = NULL, **geoms = NULL;
432892d50984SMatthew G. Knepley 
432992d50984SMatthew G. Knepley   PetscFunctionBegin;
43309566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(DMPLEX_ResidualFEM, dm, 0, 0, 0));
433192d50984SMatthew G. Knepley   /* FEM+FVM */
433292d50984SMatthew G. Knepley   /* 1: Get sizes from dm and dmAux */
43339566063dSJacob Faibussowitsch   PetscCall(DMGetLabel(dm, "ghost", &ghostLabel));
43349566063dSJacob Faibussowitsch   PetscCall(DMGetDS(dm, &prob));
43359566063dSJacob Faibussowitsch   PetscCall(PetscDSGetNumFields(prob, &Nf));
43369566063dSJacob Faibussowitsch   PetscCall(PetscDSGetTotalDimension(prob, &totDim));
43379566063dSJacob Faibussowitsch   PetscCall(DMGetAuxiliaryVec(dm, NULL, 0, 0, &locA));
433892d50984SMatthew G. Knepley   if (locA) {
43399566063dSJacob Faibussowitsch     PetscCall(VecGetDM(locA, &dmAux));
43409566063dSJacob Faibussowitsch     PetscCall(DMGetDS(dmAux, &probAux));
43419566063dSJacob Faibussowitsch     PetscCall(PetscDSGetTotalDimension(probAux, &totDimAux));
434292d50984SMatthew G. Knepley   }
434392d50984SMatthew G. Knepley   /* 2: Get geometric data */
434492d50984SMatthew G. Knepley   for (f = 0; f < Nf; ++f) {
434592d50984SMatthew G. Knepley     PetscObject  obj;
434692d50984SMatthew G. Knepley     PetscClassId id;
434792d50984SMatthew G. Knepley     PetscBool    fimp;
434892d50984SMatthew G. Knepley 
43499566063dSJacob Faibussowitsch     PetscCall(PetscDSGetImplicit(prob, f, &fimp));
435092d50984SMatthew G. Knepley     if (isImplicit != fimp) continue;
43519566063dSJacob Faibussowitsch     PetscCall(PetscDSGetDiscretization(prob, f, &obj));
43529566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetClassId(obj, &id));
4353ad540459SPierre Jolivet     if (id == PETSCFE_CLASSID) useFEM = PETSC_TRUE;
43545f80ce2aSJacob Faibussowitsch     PetscCheck(id != PETSCFV_CLASSID, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Use of FVM with PCPATCH not yet implemented");
435592d50984SMatthew G. Knepley   }
435692d50984SMatthew G. Knepley   if (useFEM) {
43579566063dSJacob Faibussowitsch     PetscCall(DMGetCoordinateField(dm, &coordField));
43589566063dSJacob Faibussowitsch     PetscCall(DMFieldGetDegree(coordField, cellIS, NULL, &maxDegree));
435992d50984SMatthew G. Knepley     if (maxDegree <= 1) {
43609566063dSJacob Faibussowitsch       PetscCall(DMFieldCreateDefaultQuadrature(coordField, cellIS, &affineQuad));
436148a46eb9SPierre Jolivet       if (affineQuad) PetscCall(DMSNESGetFEGeom(coordField, cellIS, affineQuad, PETSC_FALSE, &affineGeom));
436292d50984SMatthew G. Knepley     } else {
43639566063dSJacob Faibussowitsch       PetscCall(PetscCalloc2(Nf, &quads, Nf, &geoms));
436492d50984SMatthew G. Knepley       for (f = 0; f < Nf; ++f) {
436592d50984SMatthew G. Knepley         PetscObject  obj;
436692d50984SMatthew G. Knepley         PetscClassId id;
436792d50984SMatthew G. Knepley         PetscBool    fimp;
436892d50984SMatthew G. Knepley 
43699566063dSJacob Faibussowitsch         PetscCall(PetscDSGetImplicit(prob, f, &fimp));
437092d50984SMatthew G. Knepley         if (isImplicit != fimp) continue;
43719566063dSJacob Faibussowitsch         PetscCall(PetscDSGetDiscretization(prob, f, &obj));
43729566063dSJacob Faibussowitsch         PetscCall(PetscObjectGetClassId(obj, &id));
437392d50984SMatthew G. Knepley         if (id == PETSCFE_CLASSID) {
437492d50984SMatthew G. Knepley           PetscFE fe = (PetscFE)obj;
437592d50984SMatthew G. Knepley 
43769566063dSJacob Faibussowitsch           PetscCall(PetscFEGetQuadrature(fe, &quads[f]));
43779566063dSJacob Faibussowitsch           PetscCall(PetscObjectReference((PetscObject)quads[f]));
43789566063dSJacob Faibussowitsch           PetscCall(DMSNESGetFEGeom(coordField, cellIS, quads[f], PETSC_FALSE, &geoms[f]));
437992d50984SMatthew G. Knepley         }
438092d50984SMatthew G. Knepley       }
438192d50984SMatthew G. Knepley     }
438292d50984SMatthew G. Knepley   }
438392d50984SMatthew G. Knepley   /* Loop over chunks */
43849566063dSJacob Faibussowitsch   PetscCall(ISGetPointRange(cellIS, &cStart, &cEnd, &cells));
43859566063dSJacob Faibussowitsch   PetscCall(DMPlexGetHeightStratum(dm, 1, &fStart, &fEnd));
43869566063dSJacob Faibussowitsch   if (useFEM) PetscCall(ISCreate(PETSC_COMM_SELF, &chunkIS));
438792d50984SMatthew G. Knepley   numCells      = cEnd - cStart;
438892d50984SMatthew G. Knepley   numChunks     = 1;
438992d50984SMatthew G. Knepley   cellChunkSize = numCells / numChunks;
439092d50984SMatthew G. Knepley   numChunks     = PetscMin(1, numCells);
43916528b96dSMatthew G. Knepley   key.label     = NULL;
43926528b96dSMatthew G. Knepley   key.value     = 0;
439306ad1575SMatthew G. Knepley   key.part      = 0;
439492d50984SMatthew G. Knepley   for (chunk = 0; chunk < numChunks; ++chunk) {
4395c0006e53SPatrick Farrell     PetscScalar     *elemVec, *fluxL = NULL, *fluxR = NULL;
4396c0006e53SPatrick Farrell     PetscReal       *vol   = NULL;
4397c0006e53SPatrick Farrell     PetscFVFaceGeom *fgeom = NULL;
439892d50984SMatthew G. Knepley     PetscInt         cS = cStart + chunk * cellChunkSize, cE = PetscMin(cS + cellChunkSize, cEnd), numCells = cE - cS, c;
4399c0006e53SPatrick Farrell     PetscInt         numFaces = 0;
440092d50984SMatthew G. Knepley 
440192d50984SMatthew G. Knepley     /* Extract field coefficients */
440292d50984SMatthew G. Knepley     if (useFEM) {
44039566063dSJacob Faibussowitsch       PetscCall(ISGetPointSubrange(chunkIS, cS, cE, cells));
44049566063dSJacob Faibussowitsch       PetscCall(DMPlexGetCellFields(dm, chunkIS, locX, locX_t, locA, &u, &u_t, &a));
44059566063dSJacob Faibussowitsch       PetscCall(DMGetWorkArray(dm, numCells * totDim, MPIU_SCALAR, &elemVec));
44069566063dSJacob Faibussowitsch       PetscCall(PetscArrayzero(elemVec, numCells * totDim));
440792d50984SMatthew G. Knepley     }
440892d50984SMatthew G. Knepley     /* TODO We will interlace both our field coefficients (u, u_t, uL, uR, etc.) and our output (elemVec, fL, fR). I think this works */
440992d50984SMatthew G. Knepley     /* Loop over fields */
441092d50984SMatthew G. Knepley     for (f = 0; f < Nf; ++f) {
441192d50984SMatthew G. Knepley       PetscObject  obj;
441292d50984SMatthew G. Knepley       PetscClassId id;
441392d50984SMatthew G. Knepley       PetscBool    fimp;
441492d50984SMatthew G. Knepley       PetscInt     numChunks, numBatches, batchSize, numBlocks, blockSize, Ne, Nr, offset;
441592d50984SMatthew G. Knepley 
44166528b96dSMatthew G. Knepley       key.field = f;
44179566063dSJacob Faibussowitsch       PetscCall(PetscDSGetImplicit(prob, f, &fimp));
441892d50984SMatthew G. Knepley       if (isImplicit != fimp) continue;
44199566063dSJacob Faibussowitsch       PetscCall(PetscDSGetDiscretization(prob, f, &obj));
44209566063dSJacob Faibussowitsch       PetscCall(PetscObjectGetClassId(obj, &id));
442192d50984SMatthew G. Knepley       if (id == PETSCFE_CLASSID) {
442292d50984SMatthew G. Knepley         PetscFE         fe        = (PetscFE)obj;
442392d50984SMatthew G. Knepley         PetscFEGeom    *geom      = affineGeom ? affineGeom : geoms[f];
442492d50984SMatthew G. Knepley         PetscFEGeom    *chunkGeom = NULL;
442592d50984SMatthew G. Knepley         PetscQuadrature quad      = affineQuad ? affineQuad : quads[f];
442692d50984SMatthew G. Knepley         PetscInt        Nq, Nb;
442792d50984SMatthew G. Knepley 
44289566063dSJacob Faibussowitsch         PetscCall(PetscFEGetTileSizes(fe, NULL, &numBlocks, NULL, &numBatches));
44299566063dSJacob Faibussowitsch         PetscCall(PetscQuadratureGetData(quad, NULL, NULL, &Nq, NULL, NULL));
44309566063dSJacob Faibussowitsch         PetscCall(PetscFEGetDimension(fe, &Nb));
443192d50984SMatthew G. Knepley         blockSize = Nb;
443292d50984SMatthew G. Knepley         batchSize = numBlocks * blockSize;
44339566063dSJacob Faibussowitsch         PetscCall(PetscFESetTileSizes(fe, blockSize, numBlocks, batchSize, numBatches));
443492d50984SMatthew G. Knepley         numChunks = numCells / (numBatches * batchSize);
443592d50984SMatthew G. Knepley         Ne        = numChunks * numBatches * batchSize;
443692d50984SMatthew G. Knepley         Nr        = numCells % (numBatches * batchSize);
443792d50984SMatthew G. Knepley         offset    = numCells - Nr;
443892d50984SMatthew G. Knepley         /* Integrate FE residual to get elemVec (need fields at quadrature points) */
443992d50984SMatthew G. Knepley         /*   For FV, I think we use a P0 basis and the cell coefficients (for subdivided cells, we can tweak the basis tabulation to be the indicator function) */
44409566063dSJacob Faibussowitsch         PetscCall(PetscFEGeomGetChunk(geom, 0, offset, &chunkGeom));
44419566063dSJacob Faibussowitsch         PetscCall(PetscFEIntegrateResidual(prob, key, Ne, chunkGeom, u, u_t, probAux, a, t, elemVec));
44429566063dSJacob Faibussowitsch         PetscCall(PetscFEGeomGetChunk(geom, offset, numCells, &chunkGeom));
44438e3a54c0SPierre Jolivet         PetscCall(PetscFEIntegrateResidual(prob, key, Nr, chunkGeom, &u[offset * totDim], PetscSafePointerPlusOffset(u_t, offset * totDim), probAux, &a[offset * totDimAux], t, &elemVec[offset * totDim]));
44449566063dSJacob Faibussowitsch         PetscCall(PetscFEGeomRestoreChunk(geom, offset, numCells, &chunkGeom));
444592d50984SMatthew G. Knepley       } else if (id == PETSCFV_CLASSID) {
444692d50984SMatthew G. Knepley         PetscFV fv = (PetscFV)obj;
444792d50984SMatthew G. Knepley 
444892d50984SMatthew G. Knepley         Ne = numFaces;
444992d50984SMatthew G. Knepley         /* Riemann solve over faces (need fields at face centroids) */
445092d50984SMatthew G. Knepley         /*   We need to evaluate FE fields at those coordinates */
44519566063dSJacob Faibussowitsch         PetscCall(PetscFVIntegrateRHSFunction(fv, prob, f, Ne, fgeom, vol, uL, uR, fluxL, fluxR));
445263a3b9bcSJacob Faibussowitsch       } else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, f);
445392d50984SMatthew G. Knepley     }
445492d50984SMatthew G. Knepley     /* Loop over domain */
445592d50984SMatthew G. Knepley     if (useFEM) {
445692d50984SMatthew G. Knepley       /* Add elemVec to locX */
445792d50984SMatthew G. Knepley       for (c = cS; c < cE; ++c) {
445892d50984SMatthew G. Knepley         const PetscInt cell = cells ? cells[c] : c;
445992d50984SMatthew G. Knepley         const PetscInt cind = c - cStart;
446092d50984SMatthew G. Knepley 
44619566063dSJacob Faibussowitsch         if (mesh->printFEM > 1) PetscCall(DMPrintCellVector(cell, name, totDim, &elemVec[cind * totDim]));
446292d50984SMatthew G. Knepley         if (ghostLabel) {
446392d50984SMatthew G. Knepley           PetscInt ghostVal;
446492d50984SMatthew G. Knepley 
44659566063dSJacob Faibussowitsch           PetscCall(DMLabelGetValue(ghostLabel, cell, &ghostVal));
446692d50984SMatthew G. Knepley           if (ghostVal > 0) continue;
446792d50984SMatthew G. Knepley         }
44689566063dSJacob Faibussowitsch         PetscCall(DMPlexVecSetClosure(dm, section, locF, cell, &elemVec[cind * totDim], ADD_ALL_VALUES));
446992d50984SMatthew G. Knepley       }
447092d50984SMatthew G. Knepley     }
447192d50984SMatthew G. Knepley     /* Handle time derivative */
447292d50984SMatthew G. Knepley     if (locX_t) {
447392d50984SMatthew G. Knepley       PetscScalar *x_t, *fa;
447492d50984SMatthew G. Knepley 
44759566063dSJacob Faibussowitsch       PetscCall(VecGetArray(locF, &fa));
44769566063dSJacob Faibussowitsch       PetscCall(VecGetArray(locX_t, &x_t));
447792d50984SMatthew G. Knepley       for (f = 0; f < Nf; ++f) {
447892d50984SMatthew G. Knepley         PetscFV      fv;
447992d50984SMatthew G. Knepley         PetscObject  obj;
448092d50984SMatthew G. Knepley         PetscClassId id;
448192d50984SMatthew G. Knepley         PetscInt     pdim, d;
448292d50984SMatthew G. Knepley 
44839566063dSJacob Faibussowitsch         PetscCall(PetscDSGetDiscretization(prob, f, &obj));
44849566063dSJacob Faibussowitsch         PetscCall(PetscObjectGetClassId(obj, &id));
448592d50984SMatthew G. Knepley         if (id != PETSCFV_CLASSID) continue;
448692d50984SMatthew G. Knepley         fv = (PetscFV)obj;
44879566063dSJacob Faibussowitsch         PetscCall(PetscFVGetNumComponents(fv, &pdim));
448892d50984SMatthew G. Knepley         for (c = cS; c < cE; ++c) {
448992d50984SMatthew G. Knepley           const PetscInt cell = cells ? cells[c] : c;
449092d50984SMatthew G. Knepley           PetscScalar   *u_t, *r;
449192d50984SMatthew G. Knepley 
449292d50984SMatthew G. Knepley           if (ghostLabel) {
449392d50984SMatthew G. Knepley             PetscInt ghostVal;
449492d50984SMatthew G. Knepley 
44959566063dSJacob Faibussowitsch             PetscCall(DMLabelGetValue(ghostLabel, cell, &ghostVal));
449692d50984SMatthew G. Knepley             if (ghostVal > 0) continue;
449792d50984SMatthew G. Knepley           }
44989566063dSJacob Faibussowitsch           PetscCall(DMPlexPointLocalFieldRead(dm, cell, f, x_t, &u_t));
44999566063dSJacob Faibussowitsch           PetscCall(DMPlexPointLocalFieldRef(dm, cell, f, fa, &r));
450092d50984SMatthew G. Knepley           for (d = 0; d < pdim; ++d) r[d] += u_t[d];
450192d50984SMatthew G. Knepley         }
450292d50984SMatthew G. Knepley       }
45039566063dSJacob Faibussowitsch       PetscCall(VecRestoreArray(locX_t, &x_t));
45049566063dSJacob Faibussowitsch       PetscCall(VecRestoreArray(locF, &fa));
450592d50984SMatthew G. Knepley     }
450692d50984SMatthew G. Knepley     if (useFEM) {
45079566063dSJacob Faibussowitsch       PetscCall(DMPlexRestoreCellFields(dm, chunkIS, locX, locX_t, locA, &u, &u_t, &a));
45089566063dSJacob Faibussowitsch       PetscCall(DMRestoreWorkArray(dm, numCells * totDim, MPIU_SCALAR, &elemVec));
450992d50984SMatthew G. Knepley     }
451092d50984SMatthew G. Knepley   }
45119566063dSJacob Faibussowitsch   if (useFEM) PetscCall(ISDestroy(&chunkIS));
45129566063dSJacob Faibussowitsch   PetscCall(ISRestorePointRange(cellIS, &cStart, &cEnd, &cells));
451392d50984SMatthew G. Knepley   /* TODO Could include boundary residual here (see DMPlexComputeResidual_Internal) */
451492d50984SMatthew G. Knepley   if (useFEM) {
451592d50984SMatthew G. Knepley     if (maxDegree <= 1) {
45169566063dSJacob Faibussowitsch       PetscCall(DMSNESRestoreFEGeom(coordField, cellIS, affineQuad, PETSC_FALSE, &affineGeom));
45179566063dSJacob Faibussowitsch       PetscCall(PetscQuadratureDestroy(&affineQuad));
451892d50984SMatthew G. Knepley     } else {
451992d50984SMatthew G. Knepley       for (f = 0; f < Nf; ++f) {
45209566063dSJacob Faibussowitsch         PetscCall(DMSNESRestoreFEGeom(coordField, cellIS, quads[f], PETSC_FALSE, &geoms[f]));
45219566063dSJacob Faibussowitsch         PetscCall(PetscQuadratureDestroy(&quads[f]));
452292d50984SMatthew G. Knepley       }
45239566063dSJacob Faibussowitsch       PetscCall(PetscFree2(quads, geoms));
452492d50984SMatthew G. Knepley     }
452592d50984SMatthew G. Knepley   }
45269566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(DMPLEX_ResidualFEM, dm, 0, 0, 0));
45273ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
452892d50984SMatthew G. Knepley }
452992d50984SMatthew G. Knepley 
4530a1cf66bbSMatthew G. Knepley /*
4531a1cf66bbSMatthew G. Knepley   We always assemble JacP, and if the matrix is different from Jac and two different sets of point functions are provided, we also assemble Jac
4532a1cf66bbSMatthew G. Knepley 
4533a1cf66bbSMatthew G. Knepley   X   - The local solution vector
4534a5b23f4aSJose E. Roman   X_t - The local solution time derivative vector, or NULL
4535a1cf66bbSMatthew G. Knepley */
4536d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeJacobian_Patch_Internal(DM dm, PetscSection section, PetscSection globalSection, IS cellIS, PetscReal t, PetscReal X_tShift, Vec X, Vec X_t, Mat Jac, Mat JacP, void *ctx)
4537d71ae5a4SJacob Faibussowitsch {
4538a1cf66bbSMatthew G. Knepley   DM_Plex        *mesh = (DM_Plex *)dm->data;
4539a1cf66bbSMatthew G. Knepley   const char     *name = "Jacobian", *nameP = "JacobianPre";
4540a1cf66bbSMatthew G. Knepley   DM              dmAux = NULL;
4541a1cf66bbSMatthew G. Knepley   PetscDS         prob, probAux = NULL;
4542a1cf66bbSMatthew G. Knepley   PetscSection    sectionAux = NULL;
4543a1cf66bbSMatthew G. Knepley   Vec             A;
4544a1cf66bbSMatthew G. Knepley   DMField         coordField;
4545a1cf66bbSMatthew G. Knepley   PetscFEGeom    *cgeomFEM;
4546a1cf66bbSMatthew G. Knepley   PetscQuadrature qGeom = NULL;
4547a1cf66bbSMatthew G. Knepley   Mat             J = Jac, JP = JacP;
4548a1cf66bbSMatthew G. Knepley   PetscScalar    *work, *u = NULL, *u_t = NULL, *a = NULL, *elemMat = NULL, *elemMatP = NULL, *elemMatD = NULL;
4549e432b41dSStefano Zampini   PetscBool       hasJac, hasPrec, hasDyn, assembleJac, *isFE, hasFV = PETSC_FALSE;
4550a1cf66bbSMatthew G. Knepley   const PetscInt *cells;
455106ad1575SMatthew G. Knepley   PetscFormKey    key;
45529b2fc754SMatthew G. Knepley   PetscInt        Nf, fieldI, fieldJ, maxDegree, numCells, cStart, cEnd, numChunks, chunkSize, chunk, totDim, totDimAux = 0, sz, wsz, off = 0, offCell = 0;
4553a1cf66bbSMatthew G. Knepley 
4554a1cf66bbSMatthew G. Knepley   PetscFunctionBegin;
45559566063dSJacob Faibussowitsch   PetscCall(ISGetLocalSize(cellIS, &numCells));
45569566063dSJacob Faibussowitsch   PetscCall(ISGetPointRange(cellIS, &cStart, &cEnd, &cells));
45579566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(DMPLEX_JacobianFEM, dm, 0, 0, 0));
45589566063dSJacob Faibussowitsch   PetscCall(DMGetDS(dm, &prob));
45599566063dSJacob Faibussowitsch   PetscCall(DMGetAuxiliaryVec(dm, NULL, 0, 0, &A));
45609a2a23afSMatthew G. Knepley   if (A) {
45619566063dSJacob Faibussowitsch     PetscCall(VecGetDM(A, &dmAux));
45629566063dSJacob Faibussowitsch     PetscCall(DMGetLocalSection(dmAux, &sectionAux));
45639566063dSJacob Faibussowitsch     PetscCall(DMGetDS(dmAux, &probAux));
4564a1cf66bbSMatthew G. Knepley   }
4565a1cf66bbSMatthew G. Knepley   /* Get flags */
45669566063dSJacob Faibussowitsch   PetscCall(PetscDSGetNumFields(prob, &Nf));
45679566063dSJacob Faibussowitsch   PetscCall(DMGetWorkArray(dm, Nf, MPIU_BOOL, &isFE));
4568a1cf66bbSMatthew G. Knepley   for (fieldI = 0; fieldI < Nf; ++fieldI) {
4569a1cf66bbSMatthew G. Knepley     PetscObject  disc;
4570a1cf66bbSMatthew G. Knepley     PetscClassId id;
45719566063dSJacob Faibussowitsch     PetscCall(PetscDSGetDiscretization(prob, fieldI, &disc));
45729566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetClassId(disc, &id));
45739371c9d4SSatish Balay     if (id == PETSCFE_CLASSID) {
45749371c9d4SSatish Balay       isFE[fieldI] = PETSC_TRUE;
45759371c9d4SSatish Balay     } else if (id == PETSCFV_CLASSID) {
45769371c9d4SSatish Balay       hasFV        = PETSC_TRUE;
45779371c9d4SSatish Balay       isFE[fieldI] = PETSC_FALSE;
45789371c9d4SSatish Balay     }
4579a1cf66bbSMatthew G. Knepley   }
45809566063dSJacob Faibussowitsch   PetscCall(PetscDSHasJacobian(prob, &hasJac));
45819566063dSJacob Faibussowitsch   PetscCall(PetscDSHasJacobianPreconditioner(prob, &hasPrec));
45829566063dSJacob Faibussowitsch   PetscCall(PetscDSHasDynamicJacobian(prob, &hasDyn));
4583a1cf66bbSMatthew G. Knepley   assembleJac = hasJac && hasPrec && (Jac != JacP) ? PETSC_TRUE : PETSC_FALSE;
4584a1cf66bbSMatthew G. Knepley   hasDyn      = hasDyn && (X_tShift != 0.0) ? PETSC_TRUE : PETSC_FALSE;
45859566063dSJacob Faibussowitsch   if (hasFV) PetscCall(MatSetOption(JP, MAT_IGNORE_ZERO_ENTRIES, PETSC_TRUE)); /* No allocated space for FV stuff, so ignore the zero entries */
45869566063dSJacob Faibussowitsch   PetscCall(PetscDSGetTotalDimension(prob, &totDim));
45879566063dSJacob Faibussowitsch   if (probAux) PetscCall(PetscDSGetTotalDimension(probAux, &totDimAux));
4588a1cf66bbSMatthew G. Knepley   /* Compute batch sizes */
4589a1cf66bbSMatthew G. Knepley   if (isFE[0]) {
4590a1cf66bbSMatthew G. Knepley     PetscFE         fe;
4591a1cf66bbSMatthew G. Knepley     PetscQuadrature q;
4592a1cf66bbSMatthew G. Knepley     PetscInt        numQuadPoints, numBatches, batchSize, numBlocks, blockSize, Nb;
4593a1cf66bbSMatthew G. Knepley 
45949566063dSJacob Faibussowitsch     PetscCall(PetscDSGetDiscretization(prob, 0, (PetscObject *)&fe));
45959566063dSJacob Faibussowitsch     PetscCall(PetscFEGetQuadrature(fe, &q));
45969566063dSJacob Faibussowitsch     PetscCall(PetscQuadratureGetData(q, NULL, NULL, &numQuadPoints, NULL, NULL));
45979566063dSJacob Faibussowitsch     PetscCall(PetscFEGetDimension(fe, &Nb));
45989566063dSJacob Faibussowitsch     PetscCall(PetscFEGetTileSizes(fe, NULL, &numBlocks, NULL, &numBatches));
4599a1cf66bbSMatthew G. Knepley     blockSize = Nb * numQuadPoints;
4600a1cf66bbSMatthew G. Knepley     batchSize = numBlocks * blockSize;
4601a1cf66bbSMatthew G. Knepley     chunkSize = numBatches * batchSize;
4602a1cf66bbSMatthew G. Knepley     numChunks = numCells / chunkSize + numCells % chunkSize;
46039566063dSJacob Faibussowitsch     PetscCall(PetscFESetTileSizes(fe, blockSize, numBlocks, batchSize, numBatches));
4604a1cf66bbSMatthew G. Knepley   } else {
4605a1cf66bbSMatthew G. Knepley     chunkSize = numCells;
4606a1cf66bbSMatthew G. Knepley     numChunks = 1;
4607a1cf66bbSMatthew G. Knepley   }
4608a1cf66bbSMatthew G. Knepley   /* Get work space */
4609a1cf66bbSMatthew G. Knepley   wsz = (((X ? 1 : 0) + (X_t ? 1 : 0) + (dmAux ? 1 : 0)) * totDim + ((hasJac ? 1 : 0) + (hasPrec ? 1 : 0) + (hasDyn ? 1 : 0)) * totDim * totDim) * chunkSize;
46109566063dSJacob Faibussowitsch   PetscCall(DMGetWorkArray(dm, wsz, MPIU_SCALAR, &work));
46119566063dSJacob Faibussowitsch   PetscCall(PetscArrayzero(work, wsz));
4612a1cf66bbSMatthew G. Knepley   off      = 0;
4613a1cf66bbSMatthew G. Knepley   u        = X ? (sz = chunkSize * totDim, off += sz, work + off - sz) : NULL;
4614a1cf66bbSMatthew G. Knepley   u_t      = X_t ? (sz = chunkSize * totDim, off += sz, work + off - sz) : NULL;
4615a1cf66bbSMatthew G. Knepley   a        = dmAux ? (sz = chunkSize * totDimAux, off += sz, work + off - sz) : NULL;
4616a1cf66bbSMatthew G. Knepley   elemMat  = hasJac ? (sz = chunkSize * totDim * totDim, off += sz, work + off - sz) : NULL;
4617a1cf66bbSMatthew G. Knepley   elemMatP = hasPrec ? (sz = chunkSize * totDim * totDim, off += sz, work + off - sz) : NULL;
4618a1cf66bbSMatthew G. Knepley   elemMatD = hasDyn ? (sz = chunkSize * totDim * totDim, off += sz, work + off - sz) : NULL;
461963a3b9bcSJacob Faibussowitsch   PetscCheck(off == wsz, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Error is workspace size %" PetscInt_FMT " should be %" PetscInt_FMT, off, wsz);
4620a1cf66bbSMatthew G. Knepley   /* Setup geometry */
46219566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateField(dm, &coordField));
46229566063dSJacob Faibussowitsch   PetscCall(DMFieldGetDegree(coordField, cellIS, NULL, &maxDegree));
46239566063dSJacob Faibussowitsch   if (maxDegree <= 1) PetscCall(DMFieldCreateDefaultQuadrature(coordField, cellIS, &qGeom));
4624a1cf66bbSMatthew G. Knepley   if (!qGeom) {
4625a1cf66bbSMatthew G. Knepley     PetscFE fe;
4626a1cf66bbSMatthew G. Knepley 
46279566063dSJacob Faibussowitsch     PetscCall(PetscDSGetDiscretization(prob, 0, (PetscObject *)&fe));
46289566063dSJacob Faibussowitsch     PetscCall(PetscFEGetQuadrature(fe, &qGeom));
46299566063dSJacob Faibussowitsch     PetscCall(PetscObjectReference((PetscObject)qGeom));
4630a1cf66bbSMatthew G. Knepley   }
46319566063dSJacob Faibussowitsch   PetscCall(DMSNESGetFEGeom(coordField, cellIS, qGeom, PETSC_FALSE, &cgeomFEM));
4632a1cf66bbSMatthew G. Knepley   /* Compute volume integrals */
46339566063dSJacob Faibussowitsch   if (assembleJac) PetscCall(MatZeroEntries(J));
46349566063dSJacob Faibussowitsch   PetscCall(MatZeroEntries(JP));
46356528b96dSMatthew G. Knepley   key.label = NULL;
46366528b96dSMatthew G. Knepley   key.value = 0;
463706ad1575SMatthew G. Knepley   key.part  = 0;
4638a1cf66bbSMatthew G. Knepley   for (chunk = 0; chunk < numChunks; ++chunk, offCell += chunkSize) {
4639a1cf66bbSMatthew G. Knepley     const PetscInt Ncell = PetscMin(chunkSize, numCells - offCell);
4640a1cf66bbSMatthew G. Knepley     PetscInt       c;
4641a1cf66bbSMatthew G. Knepley 
4642a1cf66bbSMatthew G. Knepley     /* Extract values */
4643a1cf66bbSMatthew G. Knepley     for (c = 0; c < Ncell; ++c) {
4644a1cf66bbSMatthew G. Knepley       const PetscInt cell = cells ? cells[c + offCell] : c + offCell;
4645a1cf66bbSMatthew G. Knepley       PetscScalar   *x = NULL, *x_t = NULL;
4646a1cf66bbSMatthew G. Knepley       PetscInt       i;
4647a1cf66bbSMatthew G. Knepley 
4648a1cf66bbSMatthew G. Knepley       if (X) {
46499566063dSJacob Faibussowitsch         PetscCall(DMPlexVecGetClosure(dm, section, X, cell, NULL, &x));
4650a1cf66bbSMatthew G. Knepley         for (i = 0; i < totDim; ++i) u[c * totDim + i] = x[i];
46519566063dSJacob Faibussowitsch         PetscCall(DMPlexVecRestoreClosure(dm, section, X, cell, NULL, &x));
4652a1cf66bbSMatthew G. Knepley       }
4653a1cf66bbSMatthew G. Knepley       if (X_t) {
46549566063dSJacob Faibussowitsch         PetscCall(DMPlexVecGetClosure(dm, section, X_t, cell, NULL, &x_t));
4655a1cf66bbSMatthew G. Knepley         for (i = 0; i < totDim; ++i) u_t[c * totDim + i] = x_t[i];
46569566063dSJacob Faibussowitsch         PetscCall(DMPlexVecRestoreClosure(dm, section, X_t, cell, NULL, &x_t));
4657a1cf66bbSMatthew G. Knepley       }
4658a1cf66bbSMatthew G. Knepley       if (dmAux) {
46599566063dSJacob Faibussowitsch         PetscCall(DMPlexVecGetClosure(dmAux, sectionAux, A, cell, NULL, &x));
4660a1cf66bbSMatthew G. Knepley         for (i = 0; i < totDimAux; ++i) a[c * totDimAux + i] = x[i];
46619566063dSJacob Faibussowitsch         PetscCall(DMPlexVecRestoreClosure(dmAux, sectionAux, A, cell, NULL, &x));
4662a1cf66bbSMatthew G. Knepley       }
4663a1cf66bbSMatthew G. Knepley     }
4664a1cf66bbSMatthew G. Knepley     for (fieldI = 0; fieldI < Nf; ++fieldI) {
4665a1cf66bbSMatthew G. Knepley       PetscFE fe;
46669566063dSJacob Faibussowitsch       PetscCall(PetscDSGetDiscretization(prob, fieldI, (PetscObject *)&fe));
4667a1cf66bbSMatthew G. Knepley       for (fieldJ = 0; fieldJ < Nf; ++fieldJ) {
46686528b96dSMatthew G. Knepley         key.field = fieldI * Nf + fieldJ;
46699566063dSJacob Faibussowitsch         if (hasJac) PetscCall(PetscFEIntegrateJacobian(prob, PETSCFE_JACOBIAN, key, Ncell, cgeomFEM, u, u_t, probAux, a, t, X_tShift, elemMat));
46709566063dSJacob Faibussowitsch         if (hasPrec) PetscCall(PetscFEIntegrateJacobian(prob, PETSCFE_JACOBIAN_PRE, key, Ncell, cgeomFEM, u, u_t, probAux, a, t, X_tShift, elemMatP));
46719566063dSJacob Faibussowitsch         if (hasDyn) PetscCall(PetscFEIntegrateJacobian(prob, PETSCFE_JACOBIAN_DYN, key, Ncell, cgeomFEM, u, u_t, probAux, a, t, X_tShift, elemMatD));
4672a1cf66bbSMatthew G. Knepley       }
4673a1cf66bbSMatthew G. Knepley       /* For finite volume, add the identity */
4674a1cf66bbSMatthew G. Knepley       if (!isFE[fieldI]) {
4675a1cf66bbSMatthew G. Knepley         PetscFV  fv;
4676a1cf66bbSMatthew G. Knepley         PetscInt eOffset = 0, Nc, fc, foff;
4677a1cf66bbSMatthew G. Knepley 
46789566063dSJacob Faibussowitsch         PetscCall(PetscDSGetFieldOffset(prob, fieldI, &foff));
46799566063dSJacob Faibussowitsch         PetscCall(PetscDSGetDiscretization(prob, fieldI, (PetscObject *)&fv));
46809566063dSJacob Faibussowitsch         PetscCall(PetscFVGetNumComponents(fv, &Nc));
4681a1cf66bbSMatthew G. Knepley         for (c = 0; c < chunkSize; ++c, eOffset += totDim * totDim) {
4682a1cf66bbSMatthew G. Knepley           for (fc = 0; fc < Nc; ++fc) {
4683a1cf66bbSMatthew G. Knepley             const PetscInt i = foff + fc;
4684ad540459SPierre Jolivet             if (hasJac) elemMat[eOffset + i * totDim + i] = 1.0;
4685ad540459SPierre Jolivet             if (hasPrec) elemMatP[eOffset + i * totDim + i] = 1.0;
4686a1cf66bbSMatthew G. Knepley           }
4687a1cf66bbSMatthew G. Knepley         }
4688a1cf66bbSMatthew G. Knepley       }
4689a1cf66bbSMatthew G. Knepley     }
4690a1cf66bbSMatthew G. Knepley     /*   Add contribution from X_t */
46919371c9d4SSatish Balay     if (hasDyn) {
46929371c9d4SSatish Balay       for (c = 0; c < chunkSize * totDim * totDim; ++c) elemMat[c] += X_tShift * elemMatD[c];
46939371c9d4SSatish Balay     }
4694a1cf66bbSMatthew G. Knepley     /* Insert values into matrix */
4695a1cf66bbSMatthew G. Knepley     for (c = 0; c < Ncell; ++c) {
4696a1cf66bbSMatthew G. Knepley       const PetscInt cell = cells ? cells[c + offCell] : c + offCell;
4697a1cf66bbSMatthew G. Knepley       if (mesh->printFEM > 1) {
46989566063dSJacob Faibussowitsch         if (hasJac) PetscCall(DMPrintCellMatrix(cell, name, totDim, totDim, &elemMat[(c - cStart) * totDim * totDim]));
46999566063dSJacob Faibussowitsch         if (hasPrec) PetscCall(DMPrintCellMatrix(cell, nameP, totDim, totDim, &elemMatP[(c - cStart) * totDim * totDim]));
4700a1cf66bbSMatthew G. Knepley       }
4701e8e188d2SZach Atkins       if (assembleJac) PetscCall(DMPlexMatSetClosure_Internal(dm, section, globalSection, mesh->useMatClPerm, Jac, cell, &elemMat[(c - cStart) * totDim * totDim], ADD_VALUES));
4702e8e188d2SZach Atkins       PetscCall(DMPlexMatSetClosure_Internal(dm, section, globalSection, mesh->useMatClPerm, JP, cell, &elemMat[(c - cStart) * totDim * totDim], ADD_VALUES));
4703a1cf66bbSMatthew G. Knepley     }
4704a1cf66bbSMatthew G. Knepley   }
4705a1cf66bbSMatthew G. Knepley   /* Cleanup */
47069566063dSJacob Faibussowitsch   PetscCall(DMSNESRestoreFEGeom(coordField, cellIS, qGeom, PETSC_FALSE, &cgeomFEM));
47079566063dSJacob Faibussowitsch   PetscCall(PetscQuadratureDestroy(&qGeom));
47089566063dSJacob Faibussowitsch   if (hasFV) PetscCall(MatSetOption(JacP, MAT_IGNORE_ZERO_ENTRIES, PETSC_FALSE));
47099566063dSJacob Faibussowitsch   PetscCall(DMRestoreWorkArray(dm, Nf, MPIU_BOOL, &isFE));
47109566063dSJacob Faibussowitsch   PetscCall(DMRestoreWorkArray(dm, ((1 + (X_t ? 1 : 0) + (dmAux ? 1 : 0)) * totDim + ((hasJac ? 1 : 0) + (hasPrec ? 1 : 0) + (hasDyn ? 1 : 0)) * totDim * totDim) * chunkSize, MPIU_SCALAR, &work));
4711a1cf66bbSMatthew G. Knepley   /* Compute boundary integrals */
47129566063dSJacob Faibussowitsch   /* PetscCall(DMPlexComputeBdJacobian_Internal(dm, X, X_t, t, X_tShift, Jac, JacP, ctx)); */
4713a1cf66bbSMatthew G. Knepley   /* Assemble matrix */
47149371c9d4SSatish Balay   if (assembleJac) {
47159371c9d4SSatish Balay     PetscCall(MatAssemblyBegin(Jac, MAT_FINAL_ASSEMBLY));
47169371c9d4SSatish Balay     PetscCall(MatAssemblyEnd(Jac, MAT_FINAL_ASSEMBLY));
47179371c9d4SSatish Balay   }
47189371c9d4SSatish Balay   PetscCall(MatAssemblyBegin(JacP, MAT_FINAL_ASSEMBLY));
47199371c9d4SSatish Balay   PetscCall(MatAssemblyEnd(JacP, MAT_FINAL_ASSEMBLY));
47209566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(DMPLEX_JacobianFEM, dm, 0, 0, 0));
47213ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
4722a1cf66bbSMatthew G. Knepley }
47233e9753d6SMatthew G. Knepley 
47244ee01570SBarry Smith /* FEM Assembly Function */
47253e9753d6SMatthew G. Knepley 
4726d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMConvertPlex_Internal(DM dm, DM *plex, PetscBool copy)
4727d71ae5a4SJacob Faibussowitsch {
47283e9753d6SMatthew G. Knepley   PetscBool isPlex;
47293e9753d6SMatthew G. Knepley 
47303e9753d6SMatthew G. Knepley   PetscFunctionBegin;
47319566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)dm, DMPLEX, &isPlex));
47323e9753d6SMatthew G. Knepley   if (isPlex) {
47333e9753d6SMatthew G. Knepley     *plex = dm;
47349566063dSJacob Faibussowitsch     PetscCall(PetscObjectReference((PetscObject)dm));
47353e9753d6SMatthew G. Knepley   } else {
47369566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)dm, "dm_plex", (PetscObject *)plex));
47373e9753d6SMatthew G. Knepley     if (!*plex) {
47389566063dSJacob Faibussowitsch       PetscCall(DMConvert(dm, DMPLEX, plex));
47399566063dSJacob Faibussowitsch       PetscCall(PetscObjectCompose((PetscObject)dm, "dm_plex", (PetscObject)*plex));
47403e9753d6SMatthew G. Knepley     } else {
47419566063dSJacob Faibussowitsch       PetscCall(PetscObjectReference((PetscObject)*plex));
47423e9753d6SMatthew G. Knepley     }
4743cbf8eb3cSStefano Zampini     if (copy) PetscCall(DMCopyAuxiliaryVec(dm, *plex));
47443e9753d6SMatthew G. Knepley   }
47453ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
47463e9753d6SMatthew G. Knepley }
47473e9753d6SMatthew G. Knepley 
47483e9753d6SMatthew G. Knepley /*@
47493e9753d6SMatthew G. Knepley   DMPlexGetGeometryFVM - Return precomputed geometric data
47503e9753d6SMatthew G. Knepley 
475120f4b53cSBarry Smith   Collective
47523e9753d6SMatthew G. Knepley 
47533e9753d6SMatthew G. Knepley   Input Parameter:
4754a1cb98faSBarry Smith . dm - The `DM`
47553e9753d6SMatthew G. Knepley 
47563e9753d6SMatthew G. Knepley   Output Parameters:
47573e9753d6SMatthew G. Knepley + facegeom  - The values precomputed from face geometry
47583e9753d6SMatthew G. Knepley . cellgeom  - The values precomputed from cell geometry
47593e9753d6SMatthew G. Knepley - minRadius - The minimum radius over the mesh of an inscribed sphere in a cell
47603e9753d6SMatthew G. Knepley 
47613e9753d6SMatthew G. Knepley   Level: developer
47623e9753d6SMatthew G. Knepley 
47631cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMTSSetRHSFunctionLocal()`
47643e9753d6SMatthew G. Knepley @*/
4765d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexGetGeometryFVM(DM dm, Vec *facegeom, Vec *cellgeom, PetscReal *minRadius)
4766d71ae5a4SJacob Faibussowitsch {
47673e9753d6SMatthew G. Knepley   DM plex;
47683e9753d6SMatthew G. Knepley 
47693e9753d6SMatthew G. Knepley   PetscFunctionBegin;
47703e9753d6SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
47719566063dSJacob Faibussowitsch   PetscCall(DMConvertPlex_Internal(dm, &plex, PETSC_TRUE));
47729566063dSJacob Faibussowitsch   PetscCall(DMPlexGetDataFVM(plex, NULL, cellgeom, facegeom, NULL));
47739566063dSJacob Faibussowitsch   if (minRadius) PetscCall(DMPlexGetMinRadius(plex, minRadius));
47749566063dSJacob Faibussowitsch   PetscCall(DMDestroy(&plex));
47753ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
47763e9753d6SMatthew G. Knepley }
47773e9753d6SMatthew G. Knepley 
47783e9753d6SMatthew G. Knepley /*@
47793e9753d6SMatthew G. Knepley   DMPlexGetGradientDM - Return gradient data layout
47803e9753d6SMatthew G. Knepley 
478120f4b53cSBarry Smith   Collective
47823e9753d6SMatthew G. Knepley 
47833e9753d6SMatthew G. Knepley   Input Parameters:
4784a1cb98faSBarry Smith + dm - The `DM`
478520f4b53cSBarry Smith - fv - The `PetscFV`
47863e9753d6SMatthew G. Knepley 
47873e9753d6SMatthew G. Knepley   Output Parameter:
47883e9753d6SMatthew G. Knepley . dmGrad - The layout for gradient values
47893e9753d6SMatthew G. Knepley 
47903e9753d6SMatthew G. Knepley   Level: developer
47913e9753d6SMatthew G. Knepley 
47921cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexGetGeometryFVM()`
47933e9753d6SMatthew G. Knepley @*/
4794d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexGetGradientDM(DM dm, PetscFV fv, DM *dmGrad)
4795d71ae5a4SJacob Faibussowitsch {
47963e9753d6SMatthew G. Knepley   DM        plex;
47973e9753d6SMatthew G. Knepley   PetscBool computeGradients;
47983e9753d6SMatthew G. Knepley 
47993e9753d6SMatthew G. Knepley   PetscFunctionBegin;
48003e9753d6SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
48013e9753d6SMatthew G. Knepley   PetscValidHeaderSpecific(fv, PETSCFV_CLASSID, 2);
48024f572ea9SToby Isaac   PetscAssertPointer(dmGrad, 3);
48039566063dSJacob Faibussowitsch   PetscCall(PetscFVGetComputeGradients(fv, &computeGradients));
48049371c9d4SSatish Balay   if (!computeGradients) {
48059371c9d4SSatish Balay     *dmGrad = NULL;
48063ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
48079371c9d4SSatish Balay   }
48089566063dSJacob Faibussowitsch   PetscCall(DMConvertPlex_Internal(dm, &plex, PETSC_TRUE));
48099566063dSJacob Faibussowitsch   PetscCall(DMPlexGetDataFVM(plex, fv, NULL, NULL, dmGrad));
48109566063dSJacob Faibussowitsch   PetscCall(DMDestroy(&plex));
48113ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
48123e9753d6SMatthew G. Knepley }
48133e9753d6SMatthew G. Knepley 
4814d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexComputeBdResidual_Single_Internal(DM dm, PetscReal t, PetscWeakForm wf, PetscFormKey key, Vec locX, Vec locX_t, Vec locF, DMField coordField, IS facetIS)
4815d71ae5a4SJacob Faibussowitsch {
48163e9753d6SMatthew G. Knepley   DM_Plex        *mesh = (DM_Plex *)dm->data;
48173e9753d6SMatthew G. Knepley   DM              plex = NULL, plexA = NULL;
4818673019faSMatthew G. Knepley   const char     *name = "BdResidual";
48193e9753d6SMatthew G. Knepley   DMEnclosureType encAux;
48203e9753d6SMatthew G. Knepley   PetscDS         prob, probAux       = NULL;
48213e9753d6SMatthew G. Knepley   PetscSection    section, sectionAux = NULL;
48223e9753d6SMatthew G. Knepley   Vec             locA = NULL;
48233e9753d6SMatthew G. Knepley   PetscScalar    *u = NULL, *u_t = NULL, *a = NULL, *elemVec = NULL;
48243e9753d6SMatthew G. Knepley   PetscInt        totDim, totDimAux = 0;
48253e9753d6SMatthew G. Knepley 
48263e9753d6SMatthew G. Knepley   PetscFunctionBegin;
48279566063dSJacob Faibussowitsch   PetscCall(DMConvert(dm, DMPLEX, &plex));
48289566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dm, &section));
48299566063dSJacob Faibussowitsch   PetscCall(DMGetDS(dm, &prob));
48309566063dSJacob Faibussowitsch   PetscCall(PetscDSGetTotalDimension(prob, &totDim));
48319566063dSJacob Faibussowitsch   PetscCall(DMGetAuxiliaryVec(dm, key.label, key.value, key.part, &locA));
48323e9753d6SMatthew G. Knepley   if (locA) {
48333e9753d6SMatthew G. Knepley     DM dmAux;
48343e9753d6SMatthew G. Knepley 
48359566063dSJacob Faibussowitsch     PetscCall(VecGetDM(locA, &dmAux));
48369566063dSJacob Faibussowitsch     PetscCall(DMGetEnclosureRelation(dmAux, dm, &encAux));
48379566063dSJacob Faibussowitsch     PetscCall(DMConvert(dmAux, DMPLEX, &plexA));
48389566063dSJacob Faibussowitsch     PetscCall(DMGetDS(plexA, &probAux));
48399566063dSJacob Faibussowitsch     PetscCall(PetscDSGetTotalDimension(probAux, &totDimAux));
48409566063dSJacob Faibussowitsch     PetscCall(DMGetLocalSection(plexA, &sectionAux));
48413e9753d6SMatthew G. Knepley   }
48420c290148SMatthew G. Knepley   {
48433e9753d6SMatthew G. Knepley     PetscFEGeom    *fgeom;
48443e9753d6SMatthew G. Knepley     PetscInt        maxDegree;
48453e9753d6SMatthew G. Knepley     PetscQuadrature qGeom = NULL;
48463e9753d6SMatthew G. Knepley     IS              pointIS;
48473e9753d6SMatthew G. Knepley     const PetscInt *points;
48483e9753d6SMatthew G. Knepley     PetscInt        numFaces, face, Nq;
48493e9753d6SMatthew G. Knepley 
48509566063dSJacob Faibussowitsch     PetscCall(DMLabelGetStratumIS(key.label, key.value, &pointIS));
48510c290148SMatthew G. Knepley     if (!pointIS) goto end; /* No points with that id on this process */
48523e9753d6SMatthew G. Knepley     {
48533e9753d6SMatthew G. Knepley       IS isectIS;
48543e9753d6SMatthew G. Knepley 
48553e9753d6SMatthew G. Knepley       /* TODO: Special cases of ISIntersect where it is quick to check a priori if one is a superset of the other */
48569566063dSJacob Faibussowitsch       PetscCall(ISIntersect_Caching_Internal(facetIS, pointIS, &isectIS));
48579566063dSJacob Faibussowitsch       PetscCall(ISDestroy(&pointIS));
48583e9753d6SMatthew G. Knepley       pointIS = isectIS;
48593e9753d6SMatthew G. Knepley     }
48609566063dSJacob Faibussowitsch     PetscCall(ISGetLocalSize(pointIS, &numFaces));
48619566063dSJacob Faibussowitsch     PetscCall(ISGetIndices(pointIS, &points));
486232603206SJames Wright     PetscCall(PetscMalloc4(numFaces * totDim, &u, (locX_t ? (size_t)numFaces * totDim : 0), &u_t, numFaces * totDim, &elemVec, (locA ? (size_t)numFaces * totDimAux : 0), &a));
48639566063dSJacob Faibussowitsch     PetscCall(DMFieldGetDegree(coordField, pointIS, NULL, &maxDegree));
486448a46eb9SPierre Jolivet     if (maxDegree <= 1) PetscCall(DMFieldCreateDefaultQuadrature(coordField, pointIS, &qGeom));
48653e9753d6SMatthew G. Knepley     if (!qGeom) {
48663e9753d6SMatthew G. Knepley       PetscFE fe;
48673e9753d6SMatthew G. Knepley 
48689566063dSJacob Faibussowitsch       PetscCall(PetscDSGetDiscretization(prob, key.field, (PetscObject *)&fe));
48699566063dSJacob Faibussowitsch       PetscCall(PetscFEGetFaceQuadrature(fe, &qGeom));
48709566063dSJacob Faibussowitsch       PetscCall(PetscObjectReference((PetscObject)qGeom));
48713e9753d6SMatthew G. Knepley     }
48729566063dSJacob Faibussowitsch     PetscCall(PetscQuadratureGetData(qGeom, NULL, NULL, &Nq, NULL, NULL));
48739566063dSJacob Faibussowitsch     PetscCall(DMSNESGetFEGeom(coordField, pointIS, qGeom, PETSC_TRUE, &fgeom));
48743e9753d6SMatthew G. Knepley     for (face = 0; face < numFaces; ++face) {
4875f15274beSMatthew Knepley       const PetscInt point = points[face], *support;
48763e9753d6SMatthew G. Knepley       PetscScalar   *x     = NULL;
4877f15274beSMatthew Knepley       PetscInt       i;
48783e9753d6SMatthew G. Knepley 
48799566063dSJacob Faibussowitsch       PetscCall(DMPlexGetSupport(dm, point, &support));
48809566063dSJacob Faibussowitsch       PetscCall(DMPlexVecGetClosure(plex, section, locX, support[0], NULL, &x));
48813e9753d6SMatthew G. Knepley       for (i = 0; i < totDim; ++i) u[face * totDim + i] = x[i];
48829566063dSJacob Faibussowitsch       PetscCall(DMPlexVecRestoreClosure(plex, section, locX, support[0], NULL, &x));
48833e9753d6SMatthew G. Knepley       if (locX_t) {
48849566063dSJacob Faibussowitsch         PetscCall(DMPlexVecGetClosure(plex, section, locX_t, support[0], NULL, &x));
48853e9753d6SMatthew G. Knepley         for (i = 0; i < totDim; ++i) u_t[face * totDim + i] = x[i];
48869566063dSJacob Faibussowitsch         PetscCall(DMPlexVecRestoreClosure(plex, section, locX_t, support[0], NULL, &x));
48873e9753d6SMatthew G. Knepley       }
48883e9753d6SMatthew G. Knepley       if (locA) {
48893e9753d6SMatthew G. Knepley         PetscInt subp;
48903e9753d6SMatthew G. Knepley 
48919566063dSJacob Faibussowitsch         PetscCall(DMGetEnclosurePoint(plexA, dm, encAux, support[0], &subp));
48929566063dSJacob Faibussowitsch         PetscCall(DMPlexVecGetClosure(plexA, sectionAux, locA, subp, NULL, &x));
48933e9753d6SMatthew G. Knepley         for (i = 0; i < totDimAux; ++i) a[face * totDimAux + i] = x[i];
48949566063dSJacob Faibussowitsch         PetscCall(DMPlexVecRestoreClosure(plexA, sectionAux, locA, subp, NULL, &x));
48953e9753d6SMatthew G. Knepley       }
48963e9753d6SMatthew G. Knepley     }
48979566063dSJacob Faibussowitsch     PetscCall(PetscArrayzero(elemVec, numFaces * totDim));
48983e9753d6SMatthew G. Knepley     {
48993e9753d6SMatthew G. Knepley       PetscFE      fe;
49003e9753d6SMatthew G. Knepley       PetscInt     Nb;
49013e9753d6SMatthew G. Knepley       PetscFEGeom *chunkGeom = NULL;
49023e9753d6SMatthew G. Knepley       /* Conforming batches */
49033e9753d6SMatthew G. Knepley       PetscInt numChunks, numBatches, numBlocks, Ne, blockSize, batchSize;
49043e9753d6SMatthew G. Knepley       /* Remainder */
49053e9753d6SMatthew G. Knepley       PetscInt Nr, offset;
49063e9753d6SMatthew G. Knepley 
49079566063dSJacob Faibussowitsch       PetscCall(PetscDSGetDiscretization(prob, key.field, (PetscObject *)&fe));
49089566063dSJacob Faibussowitsch       PetscCall(PetscFEGetDimension(fe, &Nb));
49099566063dSJacob Faibussowitsch       PetscCall(PetscFEGetTileSizes(fe, NULL, &numBlocks, NULL, &numBatches));
49103e9753d6SMatthew G. Knepley       /* TODO: documentation is unclear about what is going on with these numbers: how should Nb / Nq factor in ? */
49113e9753d6SMatthew G. Knepley       blockSize = Nb;
49123e9753d6SMatthew G. Knepley       batchSize = numBlocks * blockSize;
49139566063dSJacob Faibussowitsch       PetscCall(PetscFESetTileSizes(fe, blockSize, numBlocks, batchSize, numBatches));
49143e9753d6SMatthew G. Knepley       numChunks = numFaces / (numBatches * batchSize);
49153e9753d6SMatthew G. Knepley       Ne        = numChunks * numBatches * batchSize;
49163e9753d6SMatthew G. Knepley       Nr        = numFaces % (numBatches * batchSize);
49173e9753d6SMatthew G. Knepley       offset    = numFaces - Nr;
49189566063dSJacob Faibussowitsch       PetscCall(PetscFEGeomGetChunk(fgeom, 0, offset, &chunkGeom));
49199566063dSJacob Faibussowitsch       PetscCall(PetscFEIntegrateBdResidual(prob, wf, key, Ne, chunkGeom, u, u_t, probAux, a, t, elemVec));
49209566063dSJacob Faibussowitsch       PetscCall(PetscFEGeomRestoreChunk(fgeom, 0, offset, &chunkGeom));
49219566063dSJacob Faibussowitsch       PetscCall(PetscFEGeomGetChunk(fgeom, offset, numFaces, &chunkGeom));
49228e3a54c0SPierre Jolivet       PetscCall(PetscFEIntegrateBdResidual(prob, wf, key, Nr, chunkGeom, &u[offset * totDim], PetscSafePointerPlusOffset(u_t, offset * totDim), probAux, PetscSafePointerPlusOffset(a, offset * totDimAux), t, &elemVec[offset * totDim]));
49239566063dSJacob Faibussowitsch       PetscCall(PetscFEGeomRestoreChunk(fgeom, offset, numFaces, &chunkGeom));
49243e9753d6SMatthew G. Knepley     }
49253e9753d6SMatthew G. Knepley     for (face = 0; face < numFaces; ++face) {
49263e9753d6SMatthew G. Knepley       const PetscInt point = points[face], *support;
49273e9753d6SMatthew G. Knepley 
4928673019faSMatthew G. Knepley       if (mesh->printFEM > 1) PetscCall(DMPrintCellVector(point, name, totDim, &elemVec[face * totDim]));
49299566063dSJacob Faibussowitsch       PetscCall(DMPlexGetSupport(plex, point, &support));
49309566063dSJacob Faibussowitsch       PetscCall(DMPlexVecSetClosure(plex, NULL, locF, support[0], &elemVec[face * totDim], ADD_ALL_VALUES));
49313e9753d6SMatthew G. Knepley     }
49329566063dSJacob Faibussowitsch     PetscCall(DMSNESRestoreFEGeom(coordField, pointIS, qGeom, PETSC_TRUE, &fgeom));
49339566063dSJacob Faibussowitsch     PetscCall(PetscQuadratureDestroy(&qGeom));
49349566063dSJacob Faibussowitsch     PetscCall(ISRestoreIndices(pointIS, &points));
49359566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&pointIS));
49369566063dSJacob Faibussowitsch     PetscCall(PetscFree4(u, u_t, elemVec, a));
49373e9753d6SMatthew G. Knepley   }
49380c290148SMatthew G. Knepley end:
4939673019faSMatthew G. Knepley   if (mesh->printFEM) {
4940673019faSMatthew G. Knepley     PetscSection s;
4941673019faSMatthew G. Knepley     Vec          locFbc;
4942673019faSMatthew G. Knepley     PetscInt     pStart, pEnd, maxDof;
4943673019faSMatthew G. Knepley     PetscScalar *zeroes;
4944673019faSMatthew G. Knepley 
4945673019faSMatthew G. Knepley     PetscCall(DMGetLocalSection(dm, &s));
4946673019faSMatthew G. Knepley     PetscCall(VecDuplicate(locF, &locFbc));
4947673019faSMatthew G. Knepley     PetscCall(VecCopy(locF, locFbc));
4948673019faSMatthew G. Knepley     PetscCall(PetscSectionGetChart(s, &pStart, &pEnd));
4949673019faSMatthew G. Knepley     PetscCall(PetscSectionGetMaxDof(s, &maxDof));
4950673019faSMatthew G. Knepley     PetscCall(PetscCalloc1(maxDof, &zeroes));
4951673019faSMatthew G. Knepley     for (PetscInt p = pStart; p < pEnd; p++) PetscCall(VecSetValuesSection(locFbc, s, p, zeroes, INSERT_BC_VALUES));
4952673019faSMatthew G. Knepley     PetscCall(PetscFree(zeroes));
4953673019faSMatthew G. Knepley     PetscCall(DMPrintLocalVec(dm, name, mesh->printTol, locFbc));
4954673019faSMatthew G. Knepley     PetscCall(VecDestroy(&locFbc));
4955673019faSMatthew G. Knepley   }
49569566063dSJacob Faibussowitsch   PetscCall(DMDestroy(&plex));
49579566063dSJacob Faibussowitsch   PetscCall(DMDestroy(&plexA));
49583ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
49593e9753d6SMatthew G. Knepley }
49603e9753d6SMatthew G. Knepley 
4961d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeBdResidualSingle(DM dm, PetscReal t, PetscWeakForm wf, PetscFormKey key, Vec locX, Vec locX_t, Vec locF)
4962d71ae5a4SJacob Faibussowitsch {
49633e9753d6SMatthew G. Knepley   DMField  coordField;
49643e9753d6SMatthew G. Knepley   DMLabel  depthLabel;
49653e9753d6SMatthew G. Knepley   IS       facetIS;
49663e9753d6SMatthew G. Knepley   PetscInt dim;
49673e9753d6SMatthew G. Knepley 
49683e9753d6SMatthew G. Knepley   PetscFunctionBegin;
49699566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dm, &dim));
49709566063dSJacob Faibussowitsch   PetscCall(DMPlexGetDepthLabel(dm, &depthLabel));
49719566063dSJacob Faibussowitsch   PetscCall(DMLabelGetStratumIS(depthLabel, dim - 1, &facetIS));
49729566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateField(dm, &coordField));
49739566063dSJacob Faibussowitsch   PetscCall(DMPlexComputeBdResidual_Single_Internal(dm, t, wf, key, locX, locX_t, locF, coordField, facetIS));
49749566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&facetIS));
49753ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
49763e9753d6SMatthew G. Knepley }
49773e9753d6SMatthew G. Knepley 
4978a4e35b19SJacob Faibussowitsch static PetscErrorCode DMPlexComputeBdResidual_Internal(DM dm, Vec locX, Vec locX_t, PetscReal t, Vec locF, void *user)
4979d71ae5a4SJacob Faibussowitsch {
49803e9753d6SMatthew G. Knepley   PetscDS  prob;
49813e9753d6SMatthew G. Knepley   PetscInt numBd, bd;
49823e9753d6SMatthew G. Knepley   DMField  coordField = NULL;
49833e9753d6SMatthew G. Knepley   IS       facetIS    = NULL;
49843e9753d6SMatthew G. Knepley   DMLabel  depthLabel;
49853e9753d6SMatthew G. Knepley   PetscInt dim;
49863e9753d6SMatthew G. Knepley 
49873e9753d6SMatthew G. Knepley   PetscFunctionBegin;
49889566063dSJacob Faibussowitsch   PetscCall(DMGetDS(dm, &prob));
49899566063dSJacob Faibussowitsch   PetscCall(DMPlexGetDepthLabel(dm, &depthLabel));
49909566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dm, &dim));
49919566063dSJacob Faibussowitsch   PetscCall(DMLabelGetStratumIS(depthLabel, dim - 1, &facetIS));
49929566063dSJacob Faibussowitsch   PetscCall(PetscDSGetNumBoundary(prob, &numBd));
49933e9753d6SMatthew G. Knepley   for (bd = 0; bd < numBd; ++bd) {
499445480ffeSMatthew G. Knepley     PetscWeakForm           wf;
49953e9753d6SMatthew G. Knepley     DMBoundaryConditionType type;
49963e9753d6SMatthew G. Knepley     DMLabel                 label;
49973e9753d6SMatthew G. Knepley     const PetscInt         *values;
49980c290148SMatthew G. Knepley     PetscInt                field, numValues, v;
49993e9753d6SMatthew G. Knepley     PetscObject             obj;
50003e9753d6SMatthew G. Knepley     PetscClassId            id;
50010c290148SMatthew G. Knepley     PetscFormKey            key;
50023e9753d6SMatthew G. Knepley 
50039566063dSJacob Faibussowitsch     PetscCall(PetscDSGetBoundary(prob, bd, &wf, &type, NULL, &label, &numValues, &values, &field, NULL, NULL, NULL, NULL, NULL));
50043d3e5d66SMatthew G. Knepley     if (type & DM_BC_ESSENTIAL) continue;
50059566063dSJacob Faibussowitsch     PetscCall(PetscDSGetDiscretization(prob, field, &obj));
50069566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetClassId(obj, &id));
50073d3e5d66SMatthew G. Knepley     if (id != PETSCFE_CLASSID) continue;
50083e9753d6SMatthew G. Knepley     if (!facetIS) {
50093e9753d6SMatthew G. Knepley       DMLabel  depthLabel;
50103e9753d6SMatthew G. Knepley       PetscInt dim;
50113e9753d6SMatthew G. Knepley 
50129566063dSJacob Faibussowitsch       PetscCall(DMPlexGetDepthLabel(dm, &depthLabel));
50139566063dSJacob Faibussowitsch       PetscCall(DMGetDimension(dm, &dim));
50149566063dSJacob Faibussowitsch       PetscCall(DMLabelGetStratumIS(depthLabel, dim - 1, &facetIS));
50153e9753d6SMatthew G. Knepley     }
50169566063dSJacob Faibussowitsch     PetscCall(DMGetCoordinateField(dm, &coordField));
50170c290148SMatthew G. Knepley     for (v = 0; v < numValues; ++v) {
50180c290148SMatthew G. Knepley       key.label = label;
50190c290148SMatthew G. Knepley       key.value = values[v];
50200c290148SMatthew G. Knepley       key.field = field;
50210c290148SMatthew G. Knepley       key.part  = 0;
50229566063dSJacob Faibussowitsch       PetscCall(DMPlexComputeBdResidual_Single_Internal(dm, t, wf, key, locX, locX_t, locF, coordField, facetIS));
50230c290148SMatthew G. Knepley     }
50243e9753d6SMatthew G. Knepley   }
50259566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&facetIS));
50263ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
50273e9753d6SMatthew G. Knepley }
50283e9753d6SMatthew G. Knepley 
5029d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeResidual_Internal(DM dm, PetscFormKey key, IS cellIS, PetscReal time, Vec locX, Vec locX_t, PetscReal t, Vec locF, void *user)
5030d71ae5a4SJacob Faibussowitsch {
50313e9753d6SMatthew G. Knepley   DM_Plex        *mesh       = (DM_Plex *)dm->data;
50323e9753d6SMatthew G. Knepley   const char     *name       = "Residual";
50333e9753d6SMatthew G. Knepley   DM              dmAux      = NULL;
50343e9753d6SMatthew G. Knepley   DM              dmGrad     = NULL;
50353e9753d6SMatthew G. Knepley   DMLabel         ghostLabel = NULL;
50366528b96dSMatthew G. Knepley   PetscDS         ds         = NULL;
50376528b96dSMatthew G. Knepley   PetscDS         dsAux      = NULL;
50383e9753d6SMatthew G. Knepley   PetscSection    section    = NULL;
50393e9753d6SMatthew G. Knepley   PetscBool       useFEM     = PETSC_FALSE;
50403e9753d6SMatthew G. Knepley   PetscBool       useFVM     = PETSC_FALSE;
50413e9753d6SMatthew G. Knepley   PetscBool       isImplicit = (locX_t || time == PETSC_MIN_REAL) ? PETSC_TRUE : PETSC_FALSE;
50423e9753d6SMatthew G. Knepley   PetscFV         fvm        = NULL;
50433e9753d6SMatthew G. Knepley   DMField         coordField = NULL;
50445962854dSMatthew G. Knepley   Vec             locA, cellGeometryFVM = NULL, faceGeometryFVM = NULL, locGrad = NULL;
50453e9753d6SMatthew G. Knepley   PetscScalar    *u = NULL, *u_t, *a, *uL, *uR;
50463e9753d6SMatthew G. Knepley   IS              chunkIS;
50473e9753d6SMatthew G. Knepley   const PetscInt *cells;
50483e9753d6SMatthew G. Knepley   PetscInt        cStart, cEnd, numCells;
50493e9753d6SMatthew G. Knepley   PetscInt        Nf, f, totDim, totDimAux, numChunks, cellChunkSize, faceChunkSize, chunk, fStart, fEnd;
50501690c2aeSBarry Smith   PetscInt        maxDegree  = PETSC_INT_MAX;
50513e9753d6SMatthew G. Knepley   PetscQuadrature affineQuad = NULL, *quads = NULL;
50523e9753d6SMatthew G. Knepley   PetscFEGeom    *affineGeom = NULL, **geoms = NULL;
50533e9753d6SMatthew G. Knepley 
50543e9753d6SMatthew G. Knepley   PetscFunctionBegin;
50559566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(DMPLEX_ResidualFEM, dm, 0, 0, 0));
50563cc88e6aSStefano Zampini   if (!cellIS) goto end;
50573cc88e6aSStefano Zampini   PetscCall(ISGetPointRange(cellIS, &cStart, &cEnd, &cells));
50583cc88e6aSStefano Zampini   if (cStart >= cEnd) goto end;
50593e9753d6SMatthew G. Knepley   /* TODO The places where we have to use isFE are probably the member functions for the PetscDisc class */
50603e9753d6SMatthew G. Knepley   /* TODO The FVM geometry is over-manipulated. Make the precalc functions return exactly what we need */
50613e9753d6SMatthew G. Knepley   /* FEM+FVM */
50629566063dSJacob Faibussowitsch   PetscCall(DMPlexGetHeightStratum(dm, 1, &fStart, &fEnd));
50633e9753d6SMatthew G. Knepley   /* 1: Get sizes from dm and dmAux */
50649566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dm, &section));
50659566063dSJacob Faibussowitsch   PetscCall(DMGetLabel(dm, "ghost", &ghostLabel));
506607218a29SMatthew G. Knepley   PetscCall(DMGetCellDS(dm, cells ? cells[cStart] : cStart, &ds, NULL));
50679566063dSJacob Faibussowitsch   PetscCall(PetscDSGetNumFields(ds, &Nf));
50689566063dSJacob Faibussowitsch   PetscCall(PetscDSGetTotalDimension(ds, &totDim));
50699566063dSJacob Faibussowitsch   PetscCall(DMGetAuxiliaryVec(dm, key.label, key.value, key.part, &locA));
50703e9753d6SMatthew G. Knepley   if (locA) {
50713e9753d6SMatthew G. Knepley     PetscInt subcell;
50729566063dSJacob Faibussowitsch     PetscCall(VecGetDM(locA, &dmAux));
50731059d808SMatthew G. Knepley     PetscCall(DMGetEnclosurePoint(dmAux, dm, DM_ENC_UNKNOWN, cells ? cells[cStart] : cStart, &subcell));
507407218a29SMatthew G. Knepley     PetscCall(DMGetCellDS(dmAux, subcell, &dsAux, NULL));
50759566063dSJacob Faibussowitsch     PetscCall(PetscDSGetTotalDimension(dsAux, &totDimAux));
50763e9753d6SMatthew G. Knepley   }
50773e9753d6SMatthew G. Knepley   /* 2: Get geometric data */
50783e9753d6SMatthew G. Knepley   for (f = 0; f < Nf; ++f) {
50793e9753d6SMatthew G. Knepley     PetscObject  obj;
50803e9753d6SMatthew G. Knepley     PetscClassId id;
50813e9753d6SMatthew G. Knepley     PetscBool    fimp;
50823e9753d6SMatthew G. Knepley 
50839566063dSJacob Faibussowitsch     PetscCall(PetscDSGetImplicit(ds, f, &fimp));
50843e9753d6SMatthew G. Knepley     if (isImplicit != fimp) continue;
50859566063dSJacob Faibussowitsch     PetscCall(PetscDSGetDiscretization(ds, f, &obj));
50869566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetClassId(obj, &id));
5087ad540459SPierre Jolivet     if (id == PETSCFE_CLASSID) useFEM = PETSC_TRUE;
50889371c9d4SSatish Balay     if (id == PETSCFV_CLASSID) {
50899371c9d4SSatish Balay       useFVM = PETSC_TRUE;
50909371c9d4SSatish Balay       fvm    = (PetscFV)obj;
50919371c9d4SSatish Balay     }
50923e9753d6SMatthew G. Knepley   }
50933e9753d6SMatthew G. Knepley   if (useFEM) {
50949566063dSJacob Faibussowitsch     PetscCall(DMGetCoordinateField(dm, &coordField));
50959566063dSJacob Faibussowitsch     PetscCall(DMFieldGetDegree(coordField, cellIS, NULL, &maxDegree));
50963e9753d6SMatthew G. Knepley     if (maxDegree <= 1) {
50979566063dSJacob Faibussowitsch       PetscCall(DMFieldCreateDefaultQuadrature(coordField, cellIS, &affineQuad));
509848a46eb9SPierre Jolivet       if (affineQuad) PetscCall(DMSNESGetFEGeom(coordField, cellIS, affineQuad, PETSC_FALSE, &affineGeom));
50993e9753d6SMatthew G. Knepley     } else {
51009566063dSJacob Faibussowitsch       PetscCall(PetscCalloc2(Nf, &quads, Nf, &geoms));
51013e9753d6SMatthew G. Knepley       for (f = 0; f < Nf; ++f) {
51023e9753d6SMatthew G. Knepley         PetscObject  obj;
51033e9753d6SMatthew G. Knepley         PetscClassId id;
51043e9753d6SMatthew G. Knepley         PetscBool    fimp;
51053e9753d6SMatthew G. Knepley 
51069566063dSJacob Faibussowitsch         PetscCall(PetscDSGetImplicit(ds, f, &fimp));
51073e9753d6SMatthew G. Knepley         if (isImplicit != fimp) continue;
51089566063dSJacob Faibussowitsch         PetscCall(PetscDSGetDiscretization(ds, f, &obj));
51099566063dSJacob Faibussowitsch         PetscCall(PetscObjectGetClassId(obj, &id));
51103e9753d6SMatthew G. Knepley         if (id == PETSCFE_CLASSID) {
51113e9753d6SMatthew G. Knepley           PetscFE fe = (PetscFE)obj;
51123e9753d6SMatthew G. Knepley 
51139566063dSJacob Faibussowitsch           PetscCall(PetscFEGetQuadrature(fe, &quads[f]));
51149566063dSJacob Faibussowitsch           PetscCall(PetscObjectReference((PetscObject)quads[f]));
51159566063dSJacob Faibussowitsch           PetscCall(DMSNESGetFEGeom(coordField, cellIS, quads[f], PETSC_FALSE, &geoms[f]));
51163e9753d6SMatthew G. Knepley         }
51173e9753d6SMatthew G. Knepley       }
51183e9753d6SMatthew G. Knepley     }
51193e9753d6SMatthew G. Knepley   }
51205962854dSMatthew G. Knepley   // Handle non-essential (e.g. outflow) boundary values
51213e9753d6SMatthew G. Knepley   if (useFVM) {
51225962854dSMatthew G. Knepley     PetscCall(DMPlexInsertBoundaryValuesFVM(dm, fvm, locX, time, &locGrad));
51239566063dSJacob Faibussowitsch     PetscCall(DMPlexGetGeometryFVM(dm, &faceGeometryFVM, &cellGeometryFVM, NULL));
51249566063dSJacob Faibussowitsch     PetscCall(DMPlexGetGradientDM(dm, fvm, &dmGrad));
51253e9753d6SMatthew G. Knepley   }
51263e9753d6SMatthew G. Knepley   /* Loop over chunks */
51279566063dSJacob Faibussowitsch   if (useFEM) PetscCall(ISCreate(PETSC_COMM_SELF, &chunkIS));
51283e9753d6SMatthew G. Knepley   numCells      = cEnd - cStart;
51293e9753d6SMatthew G. Knepley   numChunks     = 1;
51303e9753d6SMatthew G. Knepley   cellChunkSize = numCells / numChunks;
51313e9753d6SMatthew G. Knepley   faceChunkSize = (fEnd - fStart) / numChunks;
51323e9753d6SMatthew G. Knepley   numChunks     = PetscMin(1, numCells);
51333e9753d6SMatthew G. Knepley   for (chunk = 0; chunk < numChunks; ++chunk) {
51343e9753d6SMatthew G. Knepley     PetscScalar     *elemVec, *fluxL, *fluxR;
51353e9753d6SMatthew G. Knepley     PetscReal       *vol;
51363e9753d6SMatthew G. Knepley     PetscFVFaceGeom *fgeom;
51373e9753d6SMatthew G. Knepley     PetscInt         cS = cStart + chunk * cellChunkSize, cE = PetscMin(cS + cellChunkSize, cEnd), numCells = cE - cS, c;
51383e9753d6SMatthew G. Knepley     PetscInt         fS = fStart + chunk * faceChunkSize, fE = PetscMin(fS + faceChunkSize, fEnd), numFaces = 0, face;
51393e9753d6SMatthew G. Knepley 
51403e9753d6SMatthew G. Knepley     /* Extract field coefficients */
51413e9753d6SMatthew G. Knepley     if (useFEM) {
51429566063dSJacob Faibussowitsch       PetscCall(ISGetPointSubrange(chunkIS, cS, cE, cells));
51439566063dSJacob Faibussowitsch       PetscCall(DMPlexGetCellFields(dm, chunkIS, locX, locX_t, locA, &u, &u_t, &a));
51449566063dSJacob Faibussowitsch       PetscCall(DMGetWorkArray(dm, numCells * totDim, MPIU_SCALAR, &elemVec));
51459566063dSJacob Faibussowitsch       PetscCall(PetscArrayzero(elemVec, numCells * totDim));
51463e9753d6SMatthew G. Knepley     }
51473e9753d6SMatthew G. Knepley     if (useFVM) {
51489566063dSJacob Faibussowitsch       PetscCall(DMPlexGetFaceFields(dm, fS, fE, locX, locX_t, faceGeometryFVM, cellGeometryFVM, locGrad, &numFaces, &uL, &uR));
51499566063dSJacob Faibussowitsch       PetscCall(DMPlexGetFaceGeometry(dm, fS, fE, faceGeometryFVM, cellGeometryFVM, &numFaces, &fgeom, &vol));
51509566063dSJacob Faibussowitsch       PetscCall(DMGetWorkArray(dm, numFaces * totDim, MPIU_SCALAR, &fluxL));
51519566063dSJacob Faibussowitsch       PetscCall(DMGetWorkArray(dm, numFaces * totDim, MPIU_SCALAR, &fluxR));
51529566063dSJacob Faibussowitsch       PetscCall(PetscArrayzero(fluxL, numFaces * totDim));
51539566063dSJacob Faibussowitsch       PetscCall(PetscArrayzero(fluxR, numFaces * totDim));
51543e9753d6SMatthew G. Knepley     }
51553e9753d6SMatthew G. Knepley     /* TODO We will interlace both our field coefficients (u, u_t, uL, uR, etc.) and our output (elemVec, fL, fR). I think this works */
51563e9753d6SMatthew G. Knepley     /* Loop over fields */
51573e9753d6SMatthew G. Knepley     for (f = 0; f < Nf; ++f) {
51583e9753d6SMatthew G. Knepley       PetscObject  obj;
51593e9753d6SMatthew G. Knepley       PetscClassId id;
51603e9753d6SMatthew G. Knepley       PetscBool    fimp;
51613e9753d6SMatthew G. Knepley       PetscInt     numChunks, numBatches, batchSize, numBlocks, blockSize, Ne, Nr, offset;
51623e9753d6SMatthew G. Knepley 
51636528b96dSMatthew G. Knepley       key.field = f;
51649566063dSJacob Faibussowitsch       PetscCall(PetscDSGetImplicit(ds, f, &fimp));
51653e9753d6SMatthew G. Knepley       if (isImplicit != fimp) continue;
51669566063dSJacob Faibussowitsch       PetscCall(PetscDSGetDiscretization(ds, f, &obj));
51679566063dSJacob Faibussowitsch       PetscCall(PetscObjectGetClassId(obj, &id));
51683e9753d6SMatthew G. Knepley       if (id == PETSCFE_CLASSID) {
51693e9753d6SMatthew G. Knepley         PetscFE         fe        = (PetscFE)obj;
51703e9753d6SMatthew G. Knepley         PetscFEGeom    *geom      = affineGeom ? affineGeom : geoms[f];
51713e9753d6SMatthew G. Knepley         PetscFEGeom    *chunkGeom = NULL;
51723e9753d6SMatthew G. Knepley         PetscQuadrature quad      = affineQuad ? affineQuad : quads[f];
51733e9753d6SMatthew G. Knepley         PetscInt        Nq, Nb;
51743e9753d6SMatthew G. Knepley 
51759566063dSJacob Faibussowitsch         PetscCall(PetscFEGetTileSizes(fe, NULL, &numBlocks, NULL, &numBatches));
51769566063dSJacob Faibussowitsch         PetscCall(PetscQuadratureGetData(quad, NULL, NULL, &Nq, NULL, NULL));
51779566063dSJacob Faibussowitsch         PetscCall(PetscFEGetDimension(fe, &Nb));
51783e9753d6SMatthew G. Knepley         blockSize = Nb;
51793e9753d6SMatthew G. Knepley         batchSize = numBlocks * blockSize;
51809566063dSJacob Faibussowitsch         PetscCall(PetscFESetTileSizes(fe, blockSize, numBlocks, batchSize, numBatches));
51813e9753d6SMatthew G. Knepley         numChunks = numCells / (numBatches * batchSize);
51823e9753d6SMatthew G. Knepley         Ne        = numChunks * numBatches * batchSize;
51833e9753d6SMatthew G. Knepley         Nr        = numCells % (numBatches * batchSize);
51843e9753d6SMatthew G. Knepley         offset    = numCells - Nr;
51853e9753d6SMatthew G. Knepley         /* Integrate FE residual to get elemVec (need fields at quadrature points) */
51863e9753d6SMatthew G. Knepley         /*   For FV, I think we use a P0 basis and the cell coefficients (for subdivided cells, we can tweak the basis tabulation to be the indicator function) */
51879566063dSJacob Faibussowitsch         PetscCall(PetscFEGeomGetChunk(geom, 0, offset, &chunkGeom));
51889566063dSJacob Faibussowitsch         PetscCall(PetscFEIntegrateResidual(ds, key, Ne, chunkGeom, u, u_t, dsAux, a, t, elemVec));
51899566063dSJacob Faibussowitsch         PetscCall(PetscFEGeomGetChunk(geom, offset, numCells, &chunkGeom));
51908e3a54c0SPierre Jolivet         PetscCall(PetscFEIntegrateResidual(ds, key, Nr, chunkGeom, &u[offset * totDim], PetscSafePointerPlusOffset(u_t, offset * totDim), dsAux, PetscSafePointerPlusOffset(a, offset * totDimAux), t, &elemVec[offset * totDim]));
51919566063dSJacob Faibussowitsch         PetscCall(PetscFEGeomRestoreChunk(geom, offset, numCells, &chunkGeom));
51923e9753d6SMatthew G. Knepley       } else if (id == PETSCFV_CLASSID) {
51933e9753d6SMatthew G. Knepley         PetscFV fv = (PetscFV)obj;
51943e9753d6SMatthew G. Knepley 
51953e9753d6SMatthew G. Knepley         Ne = numFaces;
51963e9753d6SMatthew G. Knepley         /* Riemann solve over faces (need fields at face centroids) */
51973e9753d6SMatthew G. Knepley         /*   We need to evaluate FE fields at those coordinates */
51989566063dSJacob Faibussowitsch         PetscCall(PetscFVIntegrateRHSFunction(fv, ds, f, Ne, fgeom, vol, uL, uR, fluxL, fluxR));
519963a3b9bcSJacob Faibussowitsch       } else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, f);
52003e9753d6SMatthew G. Knepley     }
52013e9753d6SMatthew G. Knepley     /* Loop over domain */
52023e9753d6SMatthew G. Knepley     if (useFEM) {
52033e9753d6SMatthew G. Knepley       /* Add elemVec to locX */
52043e9753d6SMatthew G. Knepley       for (c = cS; c < cE; ++c) {
52053e9753d6SMatthew G. Knepley         const PetscInt cell = cells ? cells[c] : c;
52063e9753d6SMatthew G. Knepley         const PetscInt cind = c - cStart;
52073e9753d6SMatthew G. Knepley 
52089566063dSJacob Faibussowitsch         if (mesh->printFEM > 1) PetscCall(DMPrintCellVector(cell, name, totDim, &elemVec[cind * totDim]));
52093e9753d6SMatthew G. Knepley         if (ghostLabel) {
52103e9753d6SMatthew G. Knepley           PetscInt ghostVal;
52113e9753d6SMatthew G. Knepley 
52129566063dSJacob Faibussowitsch           PetscCall(DMLabelGetValue(ghostLabel, cell, &ghostVal));
52133e9753d6SMatthew G. Knepley           if (ghostVal > 0) continue;
52143e9753d6SMatthew G. Knepley         }
52159566063dSJacob Faibussowitsch         PetscCall(DMPlexVecSetClosure(dm, section, locF, cell, &elemVec[cind * totDim], ADD_ALL_VALUES));
52163e9753d6SMatthew G. Knepley       }
52173e9753d6SMatthew G. Knepley     }
52183e9753d6SMatthew G. Knepley     if (useFVM) {
52193e9753d6SMatthew G. Knepley       PetscScalar *fa;
52203e9753d6SMatthew G. Knepley       PetscInt     iface;
52213e9753d6SMatthew G. Knepley 
52229566063dSJacob Faibussowitsch       PetscCall(VecGetArray(locF, &fa));
52233e9753d6SMatthew G. Knepley       for (f = 0; f < Nf; ++f) {
52243e9753d6SMatthew G. Knepley         PetscFV      fv;
52253e9753d6SMatthew G. Knepley         PetscObject  obj;
52263e9753d6SMatthew G. Knepley         PetscClassId id;
52275962854dSMatthew G. Knepley         PetscInt     cdim, foff, pdim;
52283e9753d6SMatthew G. Knepley 
52295962854dSMatthew G. Knepley         PetscCall(DMGetCoordinateDim(dm, &cdim));
52309566063dSJacob Faibussowitsch         PetscCall(PetscDSGetDiscretization(ds, f, &obj));
52319566063dSJacob Faibussowitsch         PetscCall(PetscDSGetFieldOffset(ds, f, &foff));
52329566063dSJacob Faibussowitsch         PetscCall(PetscObjectGetClassId(obj, &id));
52333e9753d6SMatthew G. Knepley         if (id != PETSCFV_CLASSID) continue;
52343e9753d6SMatthew G. Knepley         fv = (PetscFV)obj;
52359566063dSJacob Faibussowitsch         PetscCall(PetscFVGetNumComponents(fv, &pdim));
52363e9753d6SMatthew G. Knepley         /* Accumulate fluxes to cells */
52373e9753d6SMatthew G. Knepley         for (face = fS, iface = 0; face < fE; ++face) {
52383e9753d6SMatthew G. Knepley           const PetscInt *scells;
52393e9753d6SMatthew G. Knepley           PetscScalar    *fL = NULL, *fR = NULL;
52403e9753d6SMatthew G. Knepley           PetscInt        ghost, d, nsupp, nchild;
52413e9753d6SMatthew G. Knepley 
52429566063dSJacob Faibussowitsch           PetscCall(DMLabelGetValue(ghostLabel, face, &ghost));
52439566063dSJacob Faibussowitsch           PetscCall(DMPlexGetSupportSize(dm, face, &nsupp));
52449566063dSJacob Faibussowitsch           PetscCall(DMPlexGetTreeChildren(dm, face, &nchild, NULL));
52453e9753d6SMatthew G. Knepley           if (ghost >= 0 || nsupp > 2 || nchild > 0) continue;
52469566063dSJacob Faibussowitsch           PetscCall(DMPlexGetSupport(dm, face, &scells));
52479566063dSJacob Faibussowitsch           PetscCall(DMLabelGetValue(ghostLabel, scells[0], &ghost));
52489566063dSJacob Faibussowitsch           if (ghost <= 0) PetscCall(DMPlexPointLocalFieldRef(dm, scells[0], f, fa, &fL));
52499566063dSJacob Faibussowitsch           PetscCall(DMLabelGetValue(ghostLabel, scells[1], &ghost));
52509566063dSJacob Faibussowitsch           if (ghost <= 0) PetscCall(DMPlexPointLocalFieldRef(dm, scells[1], f, fa, &fR));
52515962854dSMatthew G. Knepley           if (mesh->printFVM > 1) {
52525962854dSMatthew G. Knepley             PetscCall(DMPrintCellVectorReal(face, "Residual: normal", cdim, fgeom[iface].normal));
52535962854dSMatthew G. Knepley             PetscCall(DMPrintCellVector(face, "Residual: left state", pdim, &uL[iface * totDim + foff]));
52545962854dSMatthew G. Knepley             PetscCall(DMPrintCellVector(face, "Residual: right state", pdim, &uR[iface * totDim + foff]));
52555962854dSMatthew G. Knepley             PetscCall(DMPrintCellVector(face, "Residual: left flux", pdim, &fluxL[iface * totDim + foff]));
52565962854dSMatthew G. Knepley             PetscCall(DMPrintCellVector(face, "Residual: right flux", pdim, &fluxR[iface * totDim + foff]));
52575962854dSMatthew G. Knepley           }
52583e9753d6SMatthew G. Knepley           for (d = 0; d < pdim; ++d) {
52593e9753d6SMatthew G. Knepley             if (fL) fL[d] -= fluxL[iface * totDim + foff + d];
52603e9753d6SMatthew G. Knepley             if (fR) fR[d] += fluxR[iface * totDim + foff + d];
52613e9753d6SMatthew G. Knepley           }
52623e9753d6SMatthew G. Knepley           ++iface;
52633e9753d6SMatthew G. Knepley         }
52643e9753d6SMatthew G. Knepley       }
52659566063dSJacob Faibussowitsch       PetscCall(VecRestoreArray(locF, &fa));
52663e9753d6SMatthew G. Knepley     }
52673e9753d6SMatthew G. Knepley     /* Handle time derivative */
52683e9753d6SMatthew G. Knepley     if (locX_t) {
52693e9753d6SMatthew G. Knepley       PetscScalar *x_t, *fa;
52703e9753d6SMatthew G. Knepley 
52719566063dSJacob Faibussowitsch       PetscCall(VecGetArray(locF, &fa));
52729566063dSJacob Faibussowitsch       PetscCall(VecGetArray(locX_t, &x_t));
52733e9753d6SMatthew G. Knepley       for (f = 0; f < Nf; ++f) {
52743e9753d6SMatthew G. Knepley         PetscFV      fv;
52753e9753d6SMatthew G. Knepley         PetscObject  obj;
52763e9753d6SMatthew G. Knepley         PetscClassId id;
52773e9753d6SMatthew G. Knepley         PetscInt     pdim, d;
52783e9753d6SMatthew G. Knepley 
52799566063dSJacob Faibussowitsch         PetscCall(PetscDSGetDiscretization(ds, f, &obj));
52809566063dSJacob Faibussowitsch         PetscCall(PetscObjectGetClassId(obj, &id));
52813e9753d6SMatthew G. Knepley         if (id != PETSCFV_CLASSID) continue;
52823e9753d6SMatthew G. Knepley         fv = (PetscFV)obj;
52839566063dSJacob Faibussowitsch         PetscCall(PetscFVGetNumComponents(fv, &pdim));
52843e9753d6SMatthew G. Knepley         for (c = cS; c < cE; ++c) {
52853e9753d6SMatthew G. Knepley           const PetscInt cell = cells ? cells[c] : c;
52863e9753d6SMatthew G. Knepley           PetscScalar   *u_t, *r;
52873e9753d6SMatthew G. Knepley 
52883e9753d6SMatthew G. Knepley           if (ghostLabel) {
52893e9753d6SMatthew G. Knepley             PetscInt ghostVal;
52903e9753d6SMatthew G. Knepley 
52919566063dSJacob Faibussowitsch             PetscCall(DMLabelGetValue(ghostLabel, cell, &ghostVal));
52923e9753d6SMatthew G. Knepley             if (ghostVal > 0) continue;
52933e9753d6SMatthew G. Knepley           }
52949566063dSJacob Faibussowitsch           PetscCall(DMPlexPointLocalFieldRead(dm, cell, f, x_t, &u_t));
52959566063dSJacob Faibussowitsch           PetscCall(DMPlexPointLocalFieldRef(dm, cell, f, fa, &r));
52963e9753d6SMatthew G. Knepley           for (d = 0; d < pdim; ++d) r[d] += u_t[d];
52973e9753d6SMatthew G. Knepley         }
52983e9753d6SMatthew G. Knepley       }
52999566063dSJacob Faibussowitsch       PetscCall(VecRestoreArray(locX_t, &x_t));
53009566063dSJacob Faibussowitsch       PetscCall(VecRestoreArray(locF, &fa));
53013e9753d6SMatthew G. Knepley     }
53023e9753d6SMatthew G. Knepley     if (useFEM) {
53039566063dSJacob Faibussowitsch       PetscCall(DMPlexRestoreCellFields(dm, chunkIS, locX, locX_t, locA, &u, &u_t, &a));
53049566063dSJacob Faibussowitsch       PetscCall(DMRestoreWorkArray(dm, numCells * totDim, MPIU_SCALAR, &elemVec));
53053e9753d6SMatthew G. Knepley     }
53063e9753d6SMatthew G. Knepley     if (useFVM) {
53079566063dSJacob Faibussowitsch       PetscCall(DMPlexRestoreFaceFields(dm, fS, fE, locX, locX_t, faceGeometryFVM, cellGeometryFVM, locGrad, &numFaces, &uL, &uR));
53089566063dSJacob Faibussowitsch       PetscCall(DMPlexRestoreFaceGeometry(dm, fS, fE, faceGeometryFVM, cellGeometryFVM, &numFaces, &fgeom, &vol));
53099566063dSJacob Faibussowitsch       PetscCall(DMRestoreWorkArray(dm, numFaces * totDim, MPIU_SCALAR, &fluxL));
53109566063dSJacob Faibussowitsch       PetscCall(DMRestoreWorkArray(dm, numFaces * totDim, MPIU_SCALAR, &fluxR));
53119566063dSJacob Faibussowitsch       if (dmGrad) PetscCall(DMRestoreLocalVector(dmGrad, &locGrad));
53123e9753d6SMatthew G. Knepley     }
53133e9753d6SMatthew G. Knepley   }
53149566063dSJacob Faibussowitsch   if (useFEM) PetscCall(ISDestroy(&chunkIS));
53159566063dSJacob Faibussowitsch   PetscCall(ISRestorePointRange(cellIS, &cStart, &cEnd, &cells));
53163e9753d6SMatthew G. Knepley 
53173e9753d6SMatthew G. Knepley   if (useFEM) {
53189566063dSJacob Faibussowitsch     PetscCall(DMPlexComputeBdResidual_Internal(dm, locX, locX_t, t, locF, user));
53193e9753d6SMatthew G. Knepley 
53203e9753d6SMatthew G. Knepley     if (maxDegree <= 1) {
53219566063dSJacob Faibussowitsch       PetscCall(DMSNESRestoreFEGeom(coordField, cellIS, affineQuad, PETSC_FALSE, &affineGeom));
53229566063dSJacob Faibussowitsch       PetscCall(PetscQuadratureDestroy(&affineQuad));
53233e9753d6SMatthew G. Knepley     } else {
53243e9753d6SMatthew G. Knepley       for (f = 0; f < Nf; ++f) {
53259566063dSJacob Faibussowitsch         PetscCall(DMSNESRestoreFEGeom(coordField, cellIS, quads[f], PETSC_FALSE, &geoms[f]));
53269566063dSJacob Faibussowitsch         PetscCall(PetscQuadratureDestroy(&quads[f]));
53273e9753d6SMatthew G. Knepley       }
53289566063dSJacob Faibussowitsch       PetscCall(PetscFree2(quads, geoms));
53293e9753d6SMatthew G. Knepley     }
53303e9753d6SMatthew G. Knepley   }
53313e9753d6SMatthew G. Knepley 
53323e9753d6SMatthew G. Knepley   /* FEM */
53333e9753d6SMatthew G. Knepley   /* 1: Get sizes from dm and dmAux */
53343e9753d6SMatthew G. Knepley   /* 2: Get geometric data */
53353e9753d6SMatthew G. Knepley   /* 3: Handle boundary values */
53363e9753d6SMatthew G. Knepley   /* 4: Loop over domain */
53373e9753d6SMatthew G. Knepley   /*   Extract coefficients */
53383e9753d6SMatthew G. Knepley   /* Loop over fields */
53393e9753d6SMatthew G. Knepley   /*   Set tiling for FE*/
53403e9753d6SMatthew G. Knepley   /*   Integrate FE residual to get elemVec */
53413e9753d6SMatthew G. Knepley   /*     Loop over subdomain */
53423e9753d6SMatthew G. Knepley   /*       Loop over quad points */
53433e9753d6SMatthew G. Knepley   /*         Transform coords to real space */
53443e9753d6SMatthew G. Knepley   /*         Evaluate field and aux fields at point */
53453e9753d6SMatthew G. Knepley   /*         Evaluate residual at point */
53463e9753d6SMatthew G. Knepley   /*         Transform residual to real space */
53473e9753d6SMatthew G. Knepley   /*       Add residual to elemVec */
53483e9753d6SMatthew G. Knepley   /* Loop over domain */
53493e9753d6SMatthew G. Knepley   /*   Add elemVec to locX */
53503e9753d6SMatthew G. Knepley 
53513e9753d6SMatthew G. Knepley   /* FVM */
53523e9753d6SMatthew G. Knepley   /* Get geometric data */
53533e9753d6SMatthew G. Knepley   /* If using gradients */
53543e9753d6SMatthew G. Knepley   /*   Compute gradient data */
53553e9753d6SMatthew G. Knepley   /*   Loop over domain faces */
53563e9753d6SMatthew G. Knepley   /*     Count computational faces */
53573e9753d6SMatthew G. Knepley   /*     Reconstruct cell gradient */
53583e9753d6SMatthew G. Knepley   /*   Loop over domain cells */
53593e9753d6SMatthew G. Knepley   /*     Limit cell gradients */
53603e9753d6SMatthew G. Knepley   /* Handle boundary values */
53613e9753d6SMatthew G. Knepley   /* Loop over domain faces */
53623e9753d6SMatthew G. Knepley   /*   Read out field, centroid, normal, volume for each side of face */
53633e9753d6SMatthew G. Knepley   /* Riemann solve over faces */
53643e9753d6SMatthew G. Knepley   /* Loop over domain faces */
53653e9753d6SMatthew G. Knepley   /*   Accumulate fluxes to cells */
53663e9753d6SMatthew G. Knepley   /* TODO Change printFEM to printDisc here */
53673e9753d6SMatthew G. Knepley   if (mesh->printFEM) {
53683e9753d6SMatthew G. Knepley     Vec          locFbc;
53693e9753d6SMatthew G. Knepley     PetscInt     pStart, pEnd, p, maxDof;
53703e9753d6SMatthew G. Knepley     PetscScalar *zeroes;
53713e9753d6SMatthew G. Knepley 
53729566063dSJacob Faibussowitsch     PetscCall(VecDuplicate(locF, &locFbc));
53739566063dSJacob Faibussowitsch     PetscCall(VecCopy(locF, locFbc));
53749566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetChart(section, &pStart, &pEnd));
53759566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetMaxDof(section, &maxDof));
53769566063dSJacob Faibussowitsch     PetscCall(PetscCalloc1(maxDof, &zeroes));
537748a46eb9SPierre Jolivet     for (p = pStart; p < pEnd; p++) PetscCall(VecSetValuesSection(locFbc, section, p, zeroes, INSERT_BC_VALUES));
53789566063dSJacob Faibussowitsch     PetscCall(PetscFree(zeroes));
53799566063dSJacob Faibussowitsch     PetscCall(DMPrintLocalVec(dm, name, mesh->printTol, locFbc));
53809566063dSJacob Faibussowitsch     PetscCall(VecDestroy(&locFbc));
53813e9753d6SMatthew G. Knepley   }
53823cc88e6aSStefano Zampini end:
53839566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(DMPLEX_ResidualFEM, dm, 0, 0, 0));
53843ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
53853e9753d6SMatthew G. Knepley }
53863e9753d6SMatthew G. Knepley 
53876528b96dSMatthew G. Knepley /*
53886528b96dSMatthew G. Knepley   1) Allow multiple kernels for BdResidual for hybrid DS
53896528b96dSMatthew G. Knepley 
53906528b96dSMatthew G. Knepley   DONE 2) Get out dsAux for either side at the same time as cohesive cell dsAux
53916528b96dSMatthew G. Knepley 
53926528b96dSMatthew G. Knepley   DONE 3) Change DMGetCellFields() to get different aux data a[] for each side
53936528b96dSMatthew G. Knepley      - I think I just need to replace a[] with the closure from each face
53946528b96dSMatthew G. Knepley 
53956528b96dSMatthew G. Knepley   4) Run both kernels for each non-hybrid field with correct dsAux, and then hybrid field as before
53966528b96dSMatthew G. Knepley */
5397d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeResidual_Hybrid_Internal(DM dm, PetscFormKey key[], IS cellIS, PetscReal time, Vec locX, Vec locX_t, PetscReal t, Vec locF, void *user)
5398d71ae5a4SJacob Faibussowitsch {
53993e9753d6SMatthew G. Knepley   DM_Plex        *mesh       = (DM_Plex *)dm->data;
54003e9753d6SMatthew G. Knepley   const char     *name       = "Hybrid Residual";
540104c51a94SMatthew G. Knepley   DM              dmAux[3]   = {NULL, NULL, NULL};
54023e9753d6SMatthew G. Knepley   DMLabel         ghostLabel = NULL;
54036528b96dSMatthew G. Knepley   PetscDS         ds         = NULL;
540407218a29SMatthew G. Knepley   PetscDS         dsIn       = NULL;
54056528b96dSMatthew G. Knepley   PetscDS         dsAux[3]   = {NULL, NULL, NULL};
540604c51a94SMatthew G. Knepley   Vec             locA[3]    = {NULL, NULL, NULL};
540707218a29SMatthew G. Knepley   DM              dmScale[3] = {NULL, NULL, NULL};
540807218a29SMatthew G. Knepley   PetscDS         dsScale[3] = {NULL, NULL, NULL};
540907218a29SMatthew G. Knepley   Vec             locS[3]    = {NULL, NULL, NULL};
54103e9753d6SMatthew G. Knepley   PetscSection    section    = NULL;
54113e9753d6SMatthew G. Knepley   DMField         coordField = NULL;
541207218a29SMatthew G. Knepley   PetscScalar    *a[3]       = {NULL, NULL, NULL};
541307218a29SMatthew G. Knepley   PetscScalar    *s[3]       = {NULL, NULL, NULL};
5414b2ab40e6SMatthew G. Knepley   PetscScalar    *u          = NULL, *u_t;
541507218a29SMatthew G. Knepley   PetscScalar    *elemVecNeg, *elemVecPos, *elemVecCoh;
54163e9753d6SMatthew G. Knepley   IS              chunkIS;
54173e9753d6SMatthew G. Knepley   const PetscInt *cells;
54183e9753d6SMatthew G. Knepley   PetscInt       *faces;
54193e9753d6SMatthew G. Knepley   PetscInt        cStart, cEnd, numCells;
54203e2b0218SMatthew G. Knepley   PetscInt        Nf, f, totDim, totDimIn, totDimAux[3], totDimScale[3], numChunks, cellChunkSize, chunk;
54211690c2aeSBarry Smith   PetscInt        maxDegree  = PETSC_INT_MAX;
54223e9753d6SMatthew G. Knepley   PetscQuadrature affineQuad = NULL, *quads = NULL;
54233e9753d6SMatthew G. Knepley   PetscFEGeom    *affineGeom = NULL, **geoms = NULL;
54243e9753d6SMatthew G. Knepley 
54253e9753d6SMatthew G. Knepley   PetscFunctionBegin;
54263cc88e6aSStefano Zampini   PetscCall(PetscLogEventBegin(DMPLEX_ResidualFEM, dm, 0, 0, 0));
54273cc88e6aSStefano Zampini   if (!cellIS) goto end;
5428437e83fbSMatthew G. Knepley   PetscCall(ISGetPointRange(cellIS, &cStart, &cEnd, &cells));
5429437e83fbSMatthew G. Knepley   PetscCall(ISGetLocalSize(cellIS, &numCells));
54303cc88e6aSStefano Zampini   if (cStart >= cEnd) goto end;
54315fedec97SMatthew G. Knepley   if ((key[0].label == key[1].label) && (key[0].value == key[1].value) && (key[0].part == key[1].part)) {
54325fedec97SMatthew G. Knepley     const char *name;
54339566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetName((PetscObject)key[0].label, &name));
543463a3b9bcSJacob Faibussowitsch     SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Form keys for each side of a cohesive surface must be different (%s, %" PetscInt_FMT ", %" PetscInt_FMT ")", name, key[0].value, key[0].part);
54355fedec97SMatthew G. Knepley   }
54363e9753d6SMatthew G. Knepley   /* TODO The places where we have to use isFE are probably the member functions for the PetscDisc class */
54373e9753d6SMatthew G. Knepley   /* FEM */
54383e9753d6SMatthew G. Knepley   /* 1: Get sizes from dm and dmAux */
5439b98a7184SJames Wright   PetscCall(DMGetLocalSection(dm, &section));
54409566063dSJacob Faibussowitsch   PetscCall(DMGetLabel(dm, "ghost", &ghostLabel));
544107218a29SMatthew G. Knepley   PetscCall(DMGetCellDS(dm, cells ? cells[cStart] : cStart, &ds, &dsIn));
54429566063dSJacob Faibussowitsch   PetscCall(PetscDSGetNumFields(ds, &Nf));
54439566063dSJacob Faibussowitsch   PetscCall(PetscDSGetTotalDimension(ds, &totDim));
544407218a29SMatthew G. Knepley   PetscCall(PetscDSGetTotalDimension(dsIn, &totDimIn));
54459566063dSJacob Faibussowitsch   PetscCall(DMGetAuxiliaryVec(dm, key[2].label, key[2].value, key[2].part, &locA[2]));
544604c51a94SMatthew G. Knepley   if (locA[2]) {
54471059d808SMatthew G. Knepley     const PetscInt cellStart = cells ? cells[cStart] : cStart;
54481059d808SMatthew G. Knepley 
54499566063dSJacob Faibussowitsch     PetscCall(VecGetDM(locA[2], &dmAux[2]));
545007218a29SMatthew G. Knepley     PetscCall(DMGetCellDS(dmAux[2], cellStart, &dsAux[2], NULL));
54519566063dSJacob Faibussowitsch     PetscCall(PetscDSGetTotalDimension(dsAux[2], &totDimAux[2]));
54526528b96dSMatthew G. Knepley     {
54536528b96dSMatthew G. Knepley       const PetscInt *cone;
54546528b96dSMatthew G. Knepley       PetscInt        c;
54556528b96dSMatthew G. Knepley 
54561059d808SMatthew G. Knepley       PetscCall(DMPlexGetCone(dm, cellStart, &cone));
54576528b96dSMatthew G. Knepley       for (c = 0; c < 2; ++c) {
54586528b96dSMatthew G. Knepley         const PetscInt *support;
54596528b96dSMatthew G. Knepley         PetscInt        ssize, s;
54606528b96dSMatthew G. Knepley 
54619566063dSJacob Faibussowitsch         PetscCall(DMPlexGetSupport(dm, cone[c], &support));
54629566063dSJacob Faibussowitsch         PetscCall(DMPlexGetSupportSize(dm, cone[c], &ssize));
54631059d808SMatthew G. Knepley         PetscCheck(ssize == 2, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Face %" PetscInt_FMT " from cell %" PetscInt_FMT " has support size %" PetscInt_FMT " != 2", cone[c], cellStart, ssize);
54641059d808SMatthew G. Knepley         if (support[0] == cellStart) s = 1;
54651059d808SMatthew G. Knepley         else if (support[1] == cellStart) s = 0;
54661059d808SMatthew G. Knepley         else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Face %" PetscInt_FMT " does not have cell %" PetscInt_FMT " in its support", cone[c], cellStart);
54679566063dSJacob Faibussowitsch         PetscCall(DMGetAuxiliaryVec(dm, key[c].label, key[c].value, key[c].part, &locA[c]));
5468c75bfeddSPierre Jolivet         PetscCheck(locA[c], PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Must have auxiliary vector for (%p, %" PetscInt_FMT ", %" PetscInt_FMT ")", (void *)key[c].label, key[c].value, key[c].part);
54699566063dSJacob Faibussowitsch         if (locA[c]) PetscCall(VecGetDM(locA[c], &dmAux[c]));
5470ad540459SPierre Jolivet         else dmAux[c] = dmAux[2];
547107218a29SMatthew G. Knepley         PetscCall(DMGetCellDS(dmAux[c], support[s], &dsAux[c], NULL));
54729566063dSJacob Faibussowitsch         PetscCall(PetscDSGetTotalDimension(dsAux[c], &totDimAux[c]));
54736528b96dSMatthew G. Knepley       }
54746528b96dSMatthew G. Knepley     }
54753e9753d6SMatthew G. Knepley   }
547607218a29SMatthew G. Knepley   /* Handle mass matrix scaling
547707218a29SMatthew G. Knepley        The field in key[2] is the field to be scaled, and the scaling field is the first in the dsScale */
547807218a29SMatthew G. Knepley   PetscCall(DMGetAuxiliaryVec(dm, key[2].label, -key[2].value, key[2].part, &locS[2]));
547907218a29SMatthew G. Knepley   if (locS[2]) {
54803e2b0218SMatthew G. Knepley     const PetscInt cellStart = cells ? cells[cStart] : cStart;
548107218a29SMatthew G. Knepley     PetscInt       Nb, Nbs;
548207218a29SMatthew G. Knepley 
548307218a29SMatthew G. Knepley     PetscCall(VecGetDM(locS[2], &dmScale[2]));
54843e2b0218SMatthew G. Knepley     PetscCall(DMGetCellDS(dmScale[2], cellStart, &dsScale[2], NULL));
54853e2b0218SMatthew G. Knepley     PetscCall(PetscDSGetTotalDimension(dsScale[2], &totDimScale[2]));
548607218a29SMatthew G. Knepley     // BRAD: This is not set correctly
548707218a29SMatthew G. Knepley     key[2].field = 2;
548807218a29SMatthew G. Knepley     PetscCall(PetscDSGetFieldSize(ds, key[2].field, &Nb));
548907218a29SMatthew G. Knepley     PetscCall(PetscDSGetFieldSize(dsScale[2], 0, &Nbs));
549007218a29SMatthew G. Knepley     PetscCheck(Nb == Nbs, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "Field %" PetscInt_FMT " of size %" PetscInt_FMT " cannot be scaled by field of size %" PetscInt_FMT, key[2].field, Nb, Nbs);
54913e2b0218SMatthew G. Knepley     {
54923e2b0218SMatthew G. Knepley       const PetscInt *cone;
54933e2b0218SMatthew G. Knepley       PetscInt        c;
54943e2b0218SMatthew G. Knepley 
54953e2b0218SMatthew G. Knepley       locS[1] = locS[0] = locS[2];
54963e2b0218SMatthew G. Knepley       dmScale[1] = dmScale[0] = dmScale[2];
54973e2b0218SMatthew G. Knepley       PetscCall(DMPlexGetCone(dm, cellStart, &cone));
54983e2b0218SMatthew G. Knepley       for (c = 0; c < 2; ++c) {
54993e2b0218SMatthew G. Knepley         const PetscInt *support;
55003e2b0218SMatthew G. Knepley         PetscInt        ssize, s;
55013e2b0218SMatthew G. Knepley 
55023e2b0218SMatthew G. Knepley         PetscCall(DMPlexGetSupport(dm, cone[c], &support));
55033e2b0218SMatthew G. Knepley         PetscCall(DMPlexGetSupportSize(dm, cone[c], &ssize));
55043e2b0218SMatthew G. Knepley         PetscCheck(ssize == 2, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Face %" PetscInt_FMT " from cell %" PetscInt_FMT " has support size %" PetscInt_FMT " != 2", cone[c], cellStart, ssize);
55053e2b0218SMatthew G. Knepley         if (support[0] == cellStart) s = 1;
55063e2b0218SMatthew G. Knepley         else if (support[1] == cellStart) s = 0;
55073e2b0218SMatthew G. Knepley         else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Face %" PetscInt_FMT " does not have cell %" PetscInt_FMT " in its support", cone[c], cellStart);
55083e2b0218SMatthew G. Knepley         PetscCall(DMGetCellDS(dmScale[c], support[s], &dsScale[c], NULL));
55093e2b0218SMatthew G. Knepley         PetscCall(PetscDSGetTotalDimension(dsScale[c], &totDimScale[c]));
55103e2b0218SMatthew G. Knepley       }
55113e2b0218SMatthew G. Knepley     }
551207218a29SMatthew G. Knepley   }
55133e9753d6SMatthew G. Knepley   /* 2: Setup geometric data */
55149566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateField(dm, &coordField));
55159566063dSJacob Faibussowitsch   PetscCall(DMFieldGetDegree(coordField, cellIS, NULL, &maxDegree));
55163e9753d6SMatthew G. Knepley   if (maxDegree > 1) {
55179566063dSJacob Faibussowitsch     PetscCall(PetscCalloc2(Nf, &quads, Nf, &geoms));
55183e9753d6SMatthew G. Knepley     for (f = 0; f < Nf; ++f) {
55193e9753d6SMatthew G. Knepley       PetscFE fe;
55203e9753d6SMatthew G. Knepley 
55219566063dSJacob Faibussowitsch       PetscCall(PetscDSGetDiscretization(ds, f, (PetscObject *)&fe));
55223e9753d6SMatthew G. Knepley       if (fe) {
55239566063dSJacob Faibussowitsch         PetscCall(PetscFEGetQuadrature(fe, &quads[f]));
55249566063dSJacob Faibussowitsch         PetscCall(PetscObjectReference((PetscObject)quads[f]));
55253e9753d6SMatthew G. Knepley       }
55263e9753d6SMatthew G. Knepley     }
55273e9753d6SMatthew G. Knepley   }
55283e9753d6SMatthew G. Knepley   /* Loop over chunks */
55293e9753d6SMatthew G. Knepley   cellChunkSize = numCells;
55303e9753d6SMatthew G. Knepley   numChunks     = !numCells ? 0 : PetscCeilReal(((PetscReal)numCells) / cellChunkSize);
553107218a29SMatthew G. Knepley   PetscCall(PetscCalloc1(2 * cellChunkSize, &faces));
553207218a29SMatthew G. Knepley   PetscCall(ISCreateGeneral(PETSC_COMM_SELF, 2 * cellChunkSize, faces, PETSC_USE_POINTER, &chunkIS));
55333e9753d6SMatthew G. Knepley   /* Extract field coefficients */
55343e9753d6SMatthew G. Knepley   /* NOTE This needs the end cap faces to have identical orientations */
553507218a29SMatthew G. Knepley   PetscCall(DMPlexGetHybridCellFields(dm, cellIS, locX, locX_t, locA[2], &u, &u_t, &a[2]));
553607218a29SMatthew G. Knepley   PetscCall(DMPlexGetHybridFields(dm, dmAux, dsAux, cellIS, locA, PETSC_TRUE, a));
55373e2b0218SMatthew G. Knepley   PetscCall(DMPlexGetHybridFields(dm, dmScale, dsScale, cellIS, locS, PETSC_TRUE, s));
553807218a29SMatthew G. Knepley   PetscCall(DMGetWorkArray(dm, cellChunkSize * totDim, MPIU_SCALAR, &elemVecNeg));
553907218a29SMatthew G. Knepley   PetscCall(DMGetWorkArray(dm, cellChunkSize * totDim, MPIU_SCALAR, &elemVecPos));
554007218a29SMatthew G. Knepley   PetscCall(DMGetWorkArray(dm, cellChunkSize * totDim, MPIU_SCALAR, &elemVecCoh));
55413e9753d6SMatthew G. Knepley   for (chunk = 0; chunk < numChunks; ++chunk) {
55423e9753d6SMatthew G. Knepley     PetscInt cS = cStart + chunk * cellChunkSize, cE = PetscMin(cS + cellChunkSize, cEnd), numCells = cE - cS, c;
55433e9753d6SMatthew G. Knepley 
554407218a29SMatthew G. Knepley     PetscCall(PetscArrayzero(elemVecNeg, cellChunkSize * totDim));
554507218a29SMatthew G. Knepley     PetscCall(PetscArrayzero(elemVecPos, cellChunkSize * totDim));
554607218a29SMatthew G. Knepley     PetscCall(PetscArrayzero(elemVecCoh, cellChunkSize * totDim));
55473e9753d6SMatthew G. Knepley     /* Get faces */
55483e9753d6SMatthew G. Knepley     for (c = cS; c < cE; ++c) {
55493e9753d6SMatthew G. Knepley       const PetscInt  cell = cells ? cells[c] : c;
55503e9753d6SMatthew G. Knepley       const PetscInt *cone;
55519566063dSJacob Faibussowitsch       PetscCall(DMPlexGetCone(dm, cell, &cone));
555207218a29SMatthew G. Knepley       faces[(c - cS) * 2 + 0] = cone[0];
555307218a29SMatthew G. Knepley       faces[(c - cS) * 2 + 1] = cone[1];
55543e9753d6SMatthew G. Knepley     }
555507218a29SMatthew G. Knepley     PetscCall(ISGeneralSetIndices(chunkIS, 2 * cellChunkSize, faces, PETSC_USE_POINTER));
55563e9753d6SMatthew G. Knepley     /* Get geometric data */
55573e9753d6SMatthew G. Knepley     if (maxDegree <= 1) {
55589566063dSJacob Faibussowitsch       if (!affineQuad) PetscCall(DMFieldCreateDefaultQuadrature(coordField, chunkIS, &affineQuad));
55599566063dSJacob Faibussowitsch       if (affineQuad) PetscCall(DMSNESGetFEGeom(coordField, chunkIS, affineQuad, PETSC_TRUE, &affineGeom));
55603e9753d6SMatthew G. Knepley     } else {
55613e9753d6SMatthew G. Knepley       for (f = 0; f < Nf; ++f) {
55629566063dSJacob Faibussowitsch         if (quads[f]) PetscCall(DMSNESGetFEGeom(coordField, chunkIS, quads[f], PETSC_TRUE, &geoms[f]));
55633e9753d6SMatthew G. Knepley       }
55643e9753d6SMatthew G. Knepley     }
55653e9753d6SMatthew G. Knepley     /* Loop over fields */
55663e9753d6SMatthew G. Knepley     for (f = 0; f < Nf; ++f) {
55673e9753d6SMatthew G. Knepley       PetscFE         fe;
55683e9753d6SMatthew G. Knepley       PetscFEGeom    *geom      = affineGeom ? affineGeom : geoms[f];
5569148442b3SMatthew G. Knepley       PetscFEGeom    *chunkGeom = NULL, *remGeom = NULL;
55703e9753d6SMatthew G. Knepley       PetscQuadrature quad = affineQuad ? affineQuad : quads[f];
55713e9753d6SMatthew G. Knepley       PetscInt        numChunks, numBatches, batchSize, numBlocks, blockSize, Ne, Nr, offset, Nq, Nb;
55725fedec97SMatthew G. Knepley       PetscBool       isCohesiveField;
55733e9753d6SMatthew G. Knepley 
55749566063dSJacob Faibussowitsch       PetscCall(PetscDSGetDiscretization(ds, f, (PetscObject *)&fe));
55753e9753d6SMatthew G. Knepley       if (!fe) continue;
55769566063dSJacob Faibussowitsch       PetscCall(PetscFEGetTileSizes(fe, NULL, &numBlocks, NULL, &numBatches));
55779566063dSJacob Faibussowitsch       PetscCall(PetscQuadratureGetData(quad, NULL, NULL, &Nq, NULL, NULL));
55789566063dSJacob Faibussowitsch       PetscCall(PetscFEGetDimension(fe, &Nb));
55793e9753d6SMatthew G. Knepley       blockSize = Nb;
55803e9753d6SMatthew G. Knepley       batchSize = numBlocks * blockSize;
55819566063dSJacob Faibussowitsch       PetscCall(PetscFESetTileSizes(fe, blockSize, numBlocks, batchSize, numBatches));
55823e9753d6SMatthew G. Knepley       numChunks = numCells / (numBatches * batchSize);
55833e9753d6SMatthew G. Knepley       Ne        = numChunks * numBatches * batchSize;
55843e9753d6SMatthew G. Knepley       Nr        = numCells % (numBatches * batchSize);
55853e9753d6SMatthew G. Knepley       offset    = numCells - Nr;
558607218a29SMatthew G. Knepley       PetscCall(PetscFEGeomGetChunk(geom, 0, offset * 2, &chunkGeom));
558707218a29SMatthew G. Knepley       PetscCall(PetscFEGeomGetChunk(geom, offset * 2, numCells * 2, &remGeom));
55889566063dSJacob Faibussowitsch       PetscCall(PetscDSGetCohesive(ds, f, &isCohesiveField));
55895fedec97SMatthew G. Knepley       chunkGeom->isCohesive = remGeom->isCohesive = PETSC_TRUE;
55906528b96dSMatthew G. Knepley       key[0].field                                = f;
55916528b96dSMatthew G. Knepley       key[1].field                                = f;
55925fedec97SMatthew G. Knepley       key[2].field                                = f;
559307218a29SMatthew G. Knepley       PetscCall(PetscFEIntegrateHybridResidual(ds, dsIn, key[0], 0, Ne, chunkGeom, u, u_t, dsAux[0], a[0], t, elemVecNeg));
55948e3a54c0SPierre Jolivet       PetscCall(PetscFEIntegrateHybridResidual(ds, dsIn, key[0], 0, Nr, remGeom, &u[offset * totDimIn], PetscSafePointerPlusOffset(u_t, offset * totDimIn), dsAux[0], PetscSafePointerPlusOffset(a[0], offset * totDimAux[0]), t, &elemVecNeg[offset * totDim]));
559507218a29SMatthew G. Knepley       PetscCall(PetscFEIntegrateHybridResidual(ds, dsIn, key[1], 1, Ne, chunkGeom, u, u_t, dsAux[1], a[1], t, elemVecPos));
55968e3a54c0SPierre Jolivet       PetscCall(PetscFEIntegrateHybridResidual(ds, dsIn, key[1], 1, Nr, remGeom, &u[offset * totDimIn], PetscSafePointerPlusOffset(u_t, offset * totDimIn), dsAux[1], PetscSafePointerPlusOffset(a[1], offset * totDimAux[1]), t, &elemVecPos[offset * totDim]));
559707218a29SMatthew G. Knepley       PetscCall(PetscFEIntegrateHybridResidual(ds, dsIn, key[2], 2, Ne, chunkGeom, u, u_t, dsAux[2], a[2], t, elemVecCoh));
55988e3a54c0SPierre Jolivet       PetscCall(PetscFEIntegrateHybridResidual(ds, dsIn, key[2], 2, Nr, remGeom, &u[offset * totDimIn], PetscSafePointerPlusOffset(u_t, offset * totDimIn), dsAux[2], PetscSafePointerPlusOffset(a[2], offset * totDimAux[2]), t, &elemVecCoh[offset * totDim]));
55999566063dSJacob Faibussowitsch       PetscCall(PetscFEGeomRestoreChunk(geom, offset, numCells, &remGeom));
56009566063dSJacob Faibussowitsch       PetscCall(PetscFEGeomRestoreChunk(geom, 0, offset, &chunkGeom));
56013e9753d6SMatthew G. Knepley     }
56023e9753d6SMatthew G. Knepley     /* Add elemVec to locX */
56033e9753d6SMatthew G. Knepley     for (c = cS; c < cE; ++c) {
56043e9753d6SMatthew G. Knepley       const PetscInt cell = cells ? cells[c] : c;
56053e9753d6SMatthew G. Knepley       const PetscInt cind = c - cStart;
560607218a29SMatthew G. Knepley       PetscInt       i;
56073e9753d6SMatthew G. Knepley 
560807218a29SMatthew G. Knepley       /* Scale element values */
560907218a29SMatthew G. Knepley       if (locS[0]) {
56103e2b0218SMatthew G. Knepley         PetscInt  Nb, off = cind * totDim, soff = cind * totDimScale[0];
561107218a29SMatthew G. Knepley         PetscBool cohesive;
561207218a29SMatthew G. Knepley 
561307218a29SMatthew G. Knepley         for (f = 0; f < Nf; ++f) {
561407218a29SMatthew G. Knepley           PetscCall(PetscDSGetFieldSize(ds, f, &Nb));
561507218a29SMatthew G. Knepley           PetscCall(PetscDSGetCohesive(ds, f, &cohesive));
561607218a29SMatthew G. Knepley           if (f == key[2].field) {
561707218a29SMatthew G. Knepley             PetscCheck(cohesive, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Scaling should not happen for face fields");
561807218a29SMatthew G. Knepley             // No cohesive scaling field is currently input
561907218a29SMatthew G. Knepley             for (i = 0; i < Nb; ++i) elemVecCoh[off + i] += s[0][soff + i] * elemVecNeg[off + i] + s[1][soff + i] * elemVecPos[off + i];
562007218a29SMatthew G. Knepley             off += Nb;
562107218a29SMatthew G. Knepley           } else {
562207218a29SMatthew G. Knepley             const PetscInt N = cohesive ? Nb : Nb * 2;
562307218a29SMatthew G. Knepley 
562407218a29SMatthew G. Knepley             for (i = 0; i < N; ++i) elemVecCoh[off + i] += elemVecNeg[off + i] + elemVecPos[off + i];
562507218a29SMatthew G. Knepley             off += N;
562607218a29SMatthew G. Knepley           }
562707218a29SMatthew G. Knepley         }
562807218a29SMatthew G. Knepley       } else {
562907218a29SMatthew G. Knepley         for (i = cind * totDim; i < (cind + 1) * totDim; ++i) elemVecCoh[i] += elemVecNeg[i] + elemVecPos[i];
563007218a29SMatthew G. Knepley       }
563107218a29SMatthew G. Knepley       if (mesh->printFEM > 1) PetscCall(DMPrintCellVector(cell, name, totDim, &elemVecCoh[cind * totDim]));
56323e9753d6SMatthew G. Knepley       if (ghostLabel) {
56333e9753d6SMatthew G. Knepley         PetscInt ghostVal;
56343e9753d6SMatthew G. Knepley 
56359566063dSJacob Faibussowitsch         PetscCall(DMLabelGetValue(ghostLabel, cell, &ghostVal));
56363e9753d6SMatthew G. Knepley         if (ghostVal > 0) continue;
56373e9753d6SMatthew G. Knepley       }
563807218a29SMatthew G. Knepley       PetscCall(DMPlexVecSetClosure(dm, section, locF, cell, &elemVecCoh[cind * totDim], ADD_ALL_VALUES));
56393e9753d6SMatthew G. Knepley     }
56403e9753d6SMatthew G. Knepley   }
56419566063dSJacob Faibussowitsch   PetscCall(DMPlexRestoreCellFields(dm, cellIS, locX, locX_t, locA[2], &u, &u_t, &a[2]));
564207218a29SMatthew G. Knepley   PetscCall(DMPlexRestoreHybridFields(dm, dmAux, dsAux, cellIS, locA, PETSC_TRUE, a));
56433e2b0218SMatthew G. Knepley   PetscCall(DMPlexRestoreHybridFields(dm, dmScale, dsScale, cellIS, locS, PETSC_TRUE, s));
564407218a29SMatthew G. Knepley   PetscCall(DMRestoreWorkArray(dm, numCells * totDim, MPIU_SCALAR, &elemVecNeg));
564507218a29SMatthew G. Knepley   PetscCall(DMRestoreWorkArray(dm, numCells * totDim, MPIU_SCALAR, &elemVecPos));
564607218a29SMatthew G. Knepley   PetscCall(DMRestoreWorkArray(dm, numCells * totDim, MPIU_SCALAR, &elemVecCoh));
56479566063dSJacob Faibussowitsch   PetscCall(PetscFree(faces));
56489566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&chunkIS));
56499566063dSJacob Faibussowitsch   PetscCall(ISRestorePointRange(cellIS, &cStart, &cEnd, &cells));
56503e9753d6SMatthew G. Knepley   if (maxDegree <= 1) {
56519566063dSJacob Faibussowitsch     PetscCall(DMSNESRestoreFEGeom(coordField, cellIS, affineQuad, PETSC_FALSE, &affineGeom));
56529566063dSJacob Faibussowitsch     PetscCall(PetscQuadratureDestroy(&affineQuad));
56533e9753d6SMatthew G. Knepley   } else {
56543e9753d6SMatthew G. Knepley     for (f = 0; f < Nf; ++f) {
56559566063dSJacob Faibussowitsch       if (geoms) PetscCall(DMSNESRestoreFEGeom(coordField, cellIS, quads[f], PETSC_FALSE, &geoms[f]));
56569566063dSJacob Faibussowitsch       if (quads) PetscCall(PetscQuadratureDestroy(&quads[f]));
56573e9753d6SMatthew G. Knepley     }
56589566063dSJacob Faibussowitsch     PetscCall(PetscFree2(quads, geoms));
56593e9753d6SMatthew G. Knepley   }
566085cc2951SMatthew G. Knepley   if (mesh->printFEM) {
566185cc2951SMatthew G. Knepley     Vec          locFbc;
566285cc2951SMatthew G. Knepley     PetscInt     pStart, pEnd, p, maxDof;
566385cc2951SMatthew G. Knepley     PetscScalar *zeroes;
566485cc2951SMatthew G. Knepley 
566585cc2951SMatthew G. Knepley     PetscCall(VecDuplicate(locF, &locFbc));
566685cc2951SMatthew G. Knepley     PetscCall(VecCopy(locF, locFbc));
566785cc2951SMatthew G. Knepley     PetscCall(PetscSectionGetChart(section, &pStart, &pEnd));
566885cc2951SMatthew G. Knepley     PetscCall(PetscSectionGetMaxDof(section, &maxDof));
566985cc2951SMatthew G. Knepley     PetscCall(PetscCalloc1(maxDof, &zeroes));
567085cc2951SMatthew G. Knepley     for (p = pStart; p < pEnd; p++) PetscCall(VecSetValuesSection(locFbc, section, p, zeroes, INSERT_BC_VALUES));
567185cc2951SMatthew G. Knepley     PetscCall(PetscFree(zeroes));
567285cc2951SMatthew G. Knepley     PetscCall(DMPrintLocalVec(dm, name, mesh->printTol, locFbc));
567385cc2951SMatthew G. Knepley     PetscCall(VecDestroy(&locFbc));
567485cc2951SMatthew G. Knepley   }
56753cc88e6aSStefano Zampini end:
56769566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(DMPLEX_ResidualFEM, dm, 0, 0, 0));
56773ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
56783e9753d6SMatthew G. Knepley }
56793e9753d6SMatthew G. Knepley 
5680a4e35b19SJacob Faibussowitsch static PetscErrorCode DMPlexComputeBdJacobian_Single_Internal(DM dm, PetscReal t, PetscWeakForm wf, DMLabel label, PetscInt numValues, const PetscInt values[], PetscInt fieldI, Vec locX, Vec locX_t, PetscReal X_tShift, Mat Jac, Mat JacP, DMField coordField, IS facetIS)
5681d71ae5a4SJacob Faibussowitsch {
56823e9753d6SMatthew G. Knepley   DM_Plex        *mesh = (DM_Plex *)dm->data;
56833e9753d6SMatthew G. Knepley   DM              plex = NULL, plexA = NULL, tdm;
56843e9753d6SMatthew G. Knepley   DMEnclosureType encAux;
5685be62b2b4SMatthew G. Knepley   PetscDS         ds, dsAux           = NULL;
56863e9753d6SMatthew G. Knepley   PetscSection    section, sectionAux = NULL;
5687e432b41dSStefano Zampini   PetscSection    globalSection;
56883e9753d6SMatthew G. Knepley   Vec             locA = NULL, tv;
5689be62b2b4SMatthew G. Knepley   PetscScalar    *u = NULL, *u_t = NULL, *a = NULL, *elemMat = NULL, *elemMatP = NULL;
56903e9753d6SMatthew G. Knepley   PetscInt        v;
56913e9753d6SMatthew G. Knepley   PetscInt        Nf, totDim, totDimAux = 0;
5692be62b2b4SMatthew G. Knepley   PetscBool       hasJac = PETSC_FALSE, hasPrec = PETSC_FALSE, transform;
56933e9753d6SMatthew G. Knepley 
56943e9753d6SMatthew G. Knepley   PetscFunctionBegin;
56959566063dSJacob Faibussowitsch   PetscCall(DMHasBasisTransform(dm, &transform));
56969566063dSJacob Faibussowitsch   PetscCall(DMGetBasisTransformDM_Internal(dm, &tdm));
56979566063dSJacob Faibussowitsch   PetscCall(DMGetBasisTransformVec_Internal(dm, &tv));
56989566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dm, &section));
5699be62b2b4SMatthew G. Knepley   PetscCall(DMGetDS(dm, &ds));
5700be62b2b4SMatthew G. Knepley   PetscCall(PetscDSGetNumFields(ds, &Nf));
5701be62b2b4SMatthew G. Knepley   PetscCall(PetscDSGetTotalDimension(ds, &totDim));
570221a4fad8SMatthew G. Knepley   PetscCall(PetscWeakFormHasBdJacobian(wf, &hasJac));
570321a4fad8SMatthew G. Knepley   PetscCall(PetscWeakFormHasBdJacobianPreconditioner(wf, &hasPrec));
570421a4fad8SMatthew G. Knepley   if (!hasJac && !hasPrec) PetscFunctionReturn(PETSC_SUCCESS);
570521a4fad8SMatthew G. Knepley   PetscCall(DMConvert(dm, DMPLEX, &plex));
57069566063dSJacob Faibussowitsch   PetscCall(DMGetAuxiliaryVec(dm, label, values[0], 0, &locA));
57073e9753d6SMatthew G. Knepley   if (locA) {
57083e9753d6SMatthew G. Knepley     DM dmAux;
57093e9753d6SMatthew G. Knepley 
57109566063dSJacob Faibussowitsch     PetscCall(VecGetDM(locA, &dmAux));
57119566063dSJacob Faibussowitsch     PetscCall(DMGetEnclosureRelation(dmAux, dm, &encAux));
57129566063dSJacob Faibussowitsch     PetscCall(DMConvert(dmAux, DMPLEX, &plexA));
5713be62b2b4SMatthew G. Knepley     PetscCall(DMGetDS(plexA, &dsAux));
5714be62b2b4SMatthew G. Knepley     PetscCall(PetscDSGetTotalDimension(dsAux, &totDimAux));
57159566063dSJacob Faibussowitsch     PetscCall(DMGetLocalSection(plexA, &sectionAux));
57163e9753d6SMatthew G. Knepley   }
57173e9753d6SMatthew G. Knepley 
57189566063dSJacob Faibussowitsch   PetscCall(DMGetGlobalSection(dm, &globalSection));
57193e9753d6SMatthew G. Knepley   for (v = 0; v < numValues; ++v) {
57203e9753d6SMatthew G. Knepley     PetscFEGeom    *fgeom;
57213e9753d6SMatthew G. Knepley     PetscInt        maxDegree;
57223e9753d6SMatthew G. Knepley     PetscQuadrature qGeom = NULL;
57233e9753d6SMatthew G. Knepley     IS              pointIS;
57243e9753d6SMatthew G. Knepley     const PetscInt *points;
572506ad1575SMatthew G. Knepley     PetscFormKey    key;
57263e9753d6SMatthew G. Knepley     PetscInt        numFaces, face, Nq;
57273e9753d6SMatthew G. Knepley 
572845480ffeSMatthew G. Knepley     key.label = label;
572945480ffeSMatthew G. Knepley     key.value = values[v];
573006ad1575SMatthew G. Knepley     key.part  = 0;
57319566063dSJacob Faibussowitsch     PetscCall(DMLabelGetStratumIS(label, values[v], &pointIS));
57323e9753d6SMatthew G. Knepley     if (!pointIS) continue; /* No points with that id on this process */
57333e9753d6SMatthew G. Knepley     {
57343e9753d6SMatthew G. Knepley       IS isectIS;
57353e9753d6SMatthew G. Knepley 
57363e9753d6SMatthew G. Knepley       /* TODO: Special cases of ISIntersect where it is quick to check a prior if one is a superset of the other */
57379566063dSJacob Faibussowitsch       PetscCall(ISIntersect_Caching_Internal(facetIS, pointIS, &isectIS));
57389566063dSJacob Faibussowitsch       PetscCall(ISDestroy(&pointIS));
57393e9753d6SMatthew G. Knepley       pointIS = isectIS;
57403e9753d6SMatthew G. Knepley     }
57419566063dSJacob Faibussowitsch     PetscCall(ISGetLocalSize(pointIS, &numFaces));
57429566063dSJacob Faibussowitsch     PetscCall(ISGetIndices(pointIS, &points));
574332603206SJames Wright     PetscCall(PetscMalloc5(numFaces * totDim, &u, (locX_t ? (size_t)numFaces * totDim : 0), &u_t, (hasJac ? (size_t)numFaces * totDim * totDim : 0), &elemMat, (hasPrec ? (size_t)numFaces * totDim * totDim : 0), &elemMatP, (locA ? (size_t)numFaces * totDimAux : 0), &a));
57449566063dSJacob Faibussowitsch     PetscCall(DMFieldGetDegree(coordField, pointIS, NULL, &maxDegree));
574548a46eb9SPierre Jolivet     if (maxDegree <= 1) PetscCall(DMFieldCreateDefaultQuadrature(coordField, pointIS, &qGeom));
57463e9753d6SMatthew G. Knepley     if (!qGeom) {
57473e9753d6SMatthew G. Knepley       PetscFE fe;
57483e9753d6SMatthew G. Knepley 
5749be62b2b4SMatthew G. Knepley       PetscCall(PetscDSGetDiscretization(ds, fieldI, (PetscObject *)&fe));
57509566063dSJacob Faibussowitsch       PetscCall(PetscFEGetFaceQuadrature(fe, &qGeom));
57519566063dSJacob Faibussowitsch       PetscCall(PetscObjectReference((PetscObject)qGeom));
57523e9753d6SMatthew G. Knepley     }
57539566063dSJacob Faibussowitsch     PetscCall(PetscQuadratureGetData(qGeom, NULL, NULL, &Nq, NULL, NULL));
57549566063dSJacob Faibussowitsch     PetscCall(DMSNESGetFEGeom(coordField, pointIS, qGeom, PETSC_TRUE, &fgeom));
57553e9753d6SMatthew G. Knepley     for (face = 0; face < numFaces; ++face) {
5756f15274beSMatthew Knepley       const PetscInt point = points[face], *support;
57573e9753d6SMatthew G. Knepley       PetscScalar   *x     = NULL;
5758f15274beSMatthew Knepley       PetscInt       i;
57593e9753d6SMatthew G. Knepley 
57609566063dSJacob Faibussowitsch       PetscCall(DMPlexGetSupport(dm, point, &support));
57619566063dSJacob Faibussowitsch       PetscCall(DMPlexVecGetClosure(plex, section, locX, support[0], NULL, &x));
57623e9753d6SMatthew G. Knepley       for (i = 0; i < totDim; ++i) u[face * totDim + i] = x[i];
57639566063dSJacob Faibussowitsch       PetscCall(DMPlexVecRestoreClosure(plex, section, locX, support[0], NULL, &x));
57643e9753d6SMatthew G. Knepley       if (locX_t) {
57659566063dSJacob Faibussowitsch         PetscCall(DMPlexVecGetClosure(plex, section, locX_t, support[0], NULL, &x));
57663e9753d6SMatthew G. Knepley         for (i = 0; i < totDim; ++i) u_t[face * totDim + i] = x[i];
57679566063dSJacob Faibussowitsch         PetscCall(DMPlexVecRestoreClosure(plex, section, locX_t, support[0], NULL, &x));
57683e9753d6SMatthew G. Knepley       }
57693e9753d6SMatthew G. Knepley       if (locA) {
57703e9753d6SMatthew G. Knepley         PetscInt subp;
57719566063dSJacob Faibussowitsch         PetscCall(DMGetEnclosurePoint(plexA, dm, encAux, support[0], &subp));
57729566063dSJacob Faibussowitsch         PetscCall(DMPlexVecGetClosure(plexA, sectionAux, locA, subp, NULL, &x));
57733e9753d6SMatthew G. Knepley         for (i = 0; i < totDimAux; ++i) a[face * totDimAux + i] = x[i];
57749566063dSJacob Faibussowitsch         PetscCall(DMPlexVecRestoreClosure(plexA, sectionAux, locA, subp, NULL, &x));
57753e9753d6SMatthew G. Knepley       }
57763e9753d6SMatthew G. Knepley     }
577721a4fad8SMatthew G. Knepley     if (elemMat) PetscCall(PetscArrayzero(elemMat, numFaces * totDim * totDim));
577821a4fad8SMatthew G. Knepley     if (elemMatP) PetscCall(PetscArrayzero(elemMatP, numFaces * totDim * totDim));
57793e9753d6SMatthew G. Knepley     {
57803e9753d6SMatthew G. Knepley       PetscFE  fe;
57813e9753d6SMatthew G. Knepley       PetscInt Nb;
57823e9753d6SMatthew G. Knepley       /* Conforming batches */
57833e9753d6SMatthew G. Knepley       PetscInt numChunks, numBatches, numBlocks, Ne, blockSize, batchSize;
57843e9753d6SMatthew G. Knepley       /* Remainder */
57853e9753d6SMatthew G. Knepley       PetscFEGeom *chunkGeom = NULL;
57863e9753d6SMatthew G. Knepley       PetscInt     fieldJ, Nr, offset;
57873e9753d6SMatthew G. Knepley 
5788be62b2b4SMatthew G. Knepley       PetscCall(PetscDSGetDiscretization(ds, fieldI, (PetscObject *)&fe));
57899566063dSJacob Faibussowitsch       PetscCall(PetscFEGetDimension(fe, &Nb));
57909566063dSJacob Faibussowitsch       PetscCall(PetscFEGetTileSizes(fe, NULL, &numBlocks, NULL, &numBatches));
57913e9753d6SMatthew G. Knepley       blockSize = Nb;
57923e9753d6SMatthew G. Knepley       batchSize = numBlocks * blockSize;
57939566063dSJacob Faibussowitsch       PetscCall(PetscFESetTileSizes(fe, blockSize, numBlocks, batchSize, numBatches));
57943e9753d6SMatthew G. Knepley       numChunks = numFaces / (numBatches * batchSize);
57953e9753d6SMatthew G. Knepley       Ne        = numChunks * numBatches * batchSize;
57963e9753d6SMatthew G. Knepley       Nr        = numFaces % (numBatches * batchSize);
57973e9753d6SMatthew G. Knepley       offset    = numFaces - Nr;
57989566063dSJacob Faibussowitsch       PetscCall(PetscFEGeomGetChunk(fgeom, 0, offset, &chunkGeom));
57993e9753d6SMatthew G. Knepley       for (fieldJ = 0; fieldJ < Nf; ++fieldJ) {
580045480ffeSMatthew G. Knepley         key.field = fieldI * Nf + fieldJ;
5801be62b2b4SMatthew G. Knepley         if (hasJac) PetscCall(PetscFEIntegrateBdJacobian(ds, wf, PETSCFE_JACOBIAN, key, Ne, chunkGeom, u, u_t, dsAux, a, t, X_tShift, elemMat));
5802be62b2b4SMatthew G. Knepley         if (hasPrec) PetscCall(PetscFEIntegrateBdJacobian(ds, wf, PETSCFE_JACOBIAN_PRE, key, Ne, chunkGeom, u, u_t, dsAux, a, t, X_tShift, elemMatP));
58033e9753d6SMatthew G. Knepley       }
58049566063dSJacob Faibussowitsch       PetscCall(PetscFEGeomGetChunk(fgeom, offset, numFaces, &chunkGeom));
58053e9753d6SMatthew G. Knepley       for (fieldJ = 0; fieldJ < Nf; ++fieldJ) {
580645480ffeSMatthew G. Knepley         key.field = fieldI * Nf + fieldJ;
5807be62b2b4SMatthew G. Knepley         if (hasJac)
58088e3a54c0SPierre Jolivet           PetscCall(PetscFEIntegrateBdJacobian(ds, wf, PETSCFE_JACOBIAN, key, Nr, chunkGeom, &u[offset * totDim], PetscSafePointerPlusOffset(u_t, offset * totDim), dsAux, PetscSafePointerPlusOffset(a, offset * totDimAux), t, X_tShift, &elemMat[offset * totDim * totDim]));
5809be62b2b4SMatthew G. Knepley         if (hasPrec)
58108e3a54c0SPierre Jolivet           PetscCall(PetscFEIntegrateBdJacobian(ds, wf, PETSCFE_JACOBIAN_PRE, key, Nr, chunkGeom, &u[offset * totDim], PetscSafePointerPlusOffset(u_t, offset * totDim), dsAux, PetscSafePointerPlusOffset(a, offset * totDimAux), t, X_tShift, &elemMatP[offset * totDim * totDim]));
58113e9753d6SMatthew G. Knepley       }
58129566063dSJacob Faibussowitsch       PetscCall(PetscFEGeomRestoreChunk(fgeom, offset, numFaces, &chunkGeom));
58133e9753d6SMatthew G. Knepley     }
58143e9753d6SMatthew G. Knepley     for (face = 0; face < numFaces; ++face) {
58153e9753d6SMatthew G. Knepley       const PetscInt point = points[face], *support;
58163e9753d6SMatthew G. Knepley 
58173e9753d6SMatthew G. Knepley       /* Transform to global basis before insertion in Jacobian */
58189566063dSJacob Faibussowitsch       PetscCall(DMPlexGetSupport(plex, point, &support));
581921a4fad8SMatthew G. Knepley       if (hasJac && transform) PetscCall(DMPlexBasisTransformPointTensor_Internal(dm, tdm, tv, support[0], PETSC_TRUE, totDim, &elemMat[face * totDim * totDim]));
582021a4fad8SMatthew G. Knepley       if (hasPrec && transform) PetscCall(DMPlexBasisTransformPointTensor_Internal(dm, tdm, tv, support[0], PETSC_TRUE, totDim, &elemMatP[face * totDim * totDim]));
5821be62b2b4SMatthew G. Knepley       if (hasPrec) {
5822be62b2b4SMatthew G. Knepley         if (hasJac) {
58239566063dSJacob Faibussowitsch           if (mesh->printFEM > 1) PetscCall(DMPrintCellMatrix(point, "BdJacobian", totDim, totDim, &elemMat[face * totDim * totDim]));
582421a4fad8SMatthew G. Knepley           PetscCall(DMPlexMatSetClosure_Internal(plex, section, globalSection, mesh->useMatClPerm, Jac, support[0], &elemMat[face * totDim * totDim], ADD_VALUES));
58253e9753d6SMatthew G. Knepley         }
5826be62b2b4SMatthew G. Knepley         if (mesh->printFEM > 1) PetscCall(DMPrintCellMatrix(point, "BdJacobian", totDim, totDim, &elemMatP[face * totDim * totDim]));
5827be62b2b4SMatthew G. Knepley         PetscCall(DMPlexMatSetClosure_Internal(plex, section, globalSection, mesh->useMatClPerm, JacP, support[0], &elemMatP[face * totDim * totDim], ADD_VALUES));
5828be62b2b4SMatthew G. Knepley       } else {
5829be62b2b4SMatthew G. Knepley         if (hasJac) {
5830be62b2b4SMatthew G. Knepley           if (mesh->printFEM > 1) PetscCall(DMPrintCellMatrix(point, "BdJacobian", totDim, totDim, &elemMat[face * totDim * totDim]));
583121a4fad8SMatthew G. Knepley           PetscCall(DMPlexMatSetClosure_Internal(plex, section, globalSection, mesh->useMatClPerm, Jac, support[0], &elemMat[face * totDim * totDim], ADD_VALUES));
5832be62b2b4SMatthew G. Knepley         }
5833be62b2b4SMatthew G. Knepley       }
5834be62b2b4SMatthew G. Knepley     }
58359566063dSJacob Faibussowitsch     PetscCall(DMSNESRestoreFEGeom(coordField, pointIS, qGeom, PETSC_TRUE, &fgeom));
58369566063dSJacob Faibussowitsch     PetscCall(PetscQuadratureDestroy(&qGeom));
58379566063dSJacob Faibussowitsch     PetscCall(ISRestoreIndices(pointIS, &points));
58389566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&pointIS));
5839be62b2b4SMatthew G. Knepley     PetscCall(PetscFree5(u, u_t, elemMat, elemMatP, a));
58403e9753d6SMatthew G. Knepley   }
58419566063dSJacob Faibussowitsch   if (plex) PetscCall(DMDestroy(&plex));
58429566063dSJacob Faibussowitsch   if (plexA) PetscCall(DMDestroy(&plexA));
58433ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
58443e9753d6SMatthew G. Knepley }
58453e9753d6SMatthew G. Knepley 
5846d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeBdJacobianSingle(DM dm, PetscReal t, PetscWeakForm wf, DMLabel label, PetscInt numValues, const PetscInt values[], PetscInt field, Vec locX, Vec locX_t, PetscReal X_tShift, Mat Jac, Mat JacP)
5847d71ae5a4SJacob Faibussowitsch {
58483e9753d6SMatthew G. Knepley   DMField  coordField;
58493e9753d6SMatthew G. Knepley   DMLabel  depthLabel;
58503e9753d6SMatthew G. Knepley   IS       facetIS;
58513e9753d6SMatthew G. Knepley   PetscInt dim;
58523e9753d6SMatthew G. Knepley 
58533e9753d6SMatthew G. Knepley   PetscFunctionBegin;
58549566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dm, &dim));
58559566063dSJacob Faibussowitsch   PetscCall(DMPlexGetDepthLabel(dm, &depthLabel));
58569566063dSJacob Faibussowitsch   PetscCall(DMLabelGetStratumIS(depthLabel, dim - 1, &facetIS));
58579566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateField(dm, &coordField));
58589566063dSJacob Faibussowitsch   PetscCall(DMPlexComputeBdJacobian_Single_Internal(dm, t, wf, label, numValues, values, field, locX, locX_t, X_tShift, Jac, JacP, coordField, facetIS));
58599566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&facetIS));
58603ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
58613e9753d6SMatthew G. Knepley }
58623e9753d6SMatthew G. Knepley 
5863a4e35b19SJacob Faibussowitsch static PetscErrorCode DMPlexComputeBdJacobian_Internal(DM dm, Vec locX, Vec locX_t, PetscReal t, PetscReal X_tShift, Mat Jac, Mat JacP, void *user)
5864d71ae5a4SJacob Faibussowitsch {
58653e9753d6SMatthew G. Knepley   PetscDS  prob;
58663e9753d6SMatthew G. Knepley   PetscInt dim, numBd, bd;
58673e9753d6SMatthew G. Knepley   DMLabel  depthLabel;
58683e9753d6SMatthew G. Knepley   DMField  coordField = NULL;
58693e9753d6SMatthew G. Knepley   IS       facetIS;
58703e9753d6SMatthew G. Knepley 
58713e9753d6SMatthew G. Knepley   PetscFunctionBegin;
58729566063dSJacob Faibussowitsch   PetscCall(DMGetDS(dm, &prob));
58739566063dSJacob Faibussowitsch   PetscCall(DMPlexGetDepthLabel(dm, &depthLabel));
58749566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dm, &dim));
58759566063dSJacob Faibussowitsch   PetscCall(DMLabelGetStratumIS(depthLabel, dim - 1, &facetIS));
58769566063dSJacob Faibussowitsch   PetscCall(PetscDSGetNumBoundary(prob, &numBd));
58779566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateField(dm, &coordField));
58783e9753d6SMatthew G. Knepley   for (bd = 0; bd < numBd; ++bd) {
587945480ffeSMatthew G. Knepley     PetscWeakForm           wf;
58803e9753d6SMatthew G. Knepley     DMBoundaryConditionType type;
58813e9753d6SMatthew G. Knepley     DMLabel                 label;
58823e9753d6SMatthew G. Knepley     const PetscInt         *values;
58833e9753d6SMatthew G. Knepley     PetscInt                fieldI, numValues;
58843e9753d6SMatthew G. Knepley     PetscObject             obj;
58853e9753d6SMatthew G. Knepley     PetscClassId            id;
58863e9753d6SMatthew G. Knepley 
58879566063dSJacob Faibussowitsch     PetscCall(PetscDSGetBoundary(prob, bd, &wf, &type, NULL, &label, &numValues, &values, &fieldI, NULL, NULL, NULL, NULL, NULL));
58883d3e5d66SMatthew G. Knepley     if (type & DM_BC_ESSENTIAL) continue;
58899566063dSJacob Faibussowitsch     PetscCall(PetscDSGetDiscretization(prob, fieldI, &obj));
58909566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetClassId(obj, &id));
58913d3e5d66SMatthew G. Knepley     if (id != PETSCFE_CLASSID) continue;
58929566063dSJacob Faibussowitsch     PetscCall(DMPlexComputeBdJacobian_Single_Internal(dm, t, wf, label, numValues, values, fieldI, locX, locX_t, X_tShift, Jac, JacP, coordField, facetIS));
58933e9753d6SMatthew G. Knepley   }
58949566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&facetIS));
58953ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
58963e9753d6SMatthew G. Knepley }
58973e9753d6SMatthew G. Knepley 
5898d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeJacobian_Internal(DM dm, PetscFormKey key, IS cellIS, PetscReal t, PetscReal X_tShift, Vec X, Vec X_t, Mat Jac, Mat JacP, void *user)
5899d71ae5a4SJacob Faibussowitsch {
59003e9753d6SMatthew G. Knepley   DM_Plex        *mesh  = (DM_Plex *)dm->data;
59013e9753d6SMatthew G. Knepley   const char     *name  = "Jacobian";
59029a2a23afSMatthew G. Knepley   DM              dmAux = NULL, plex, tdm;
59033e9753d6SMatthew G. Knepley   DMEnclosureType encAux;
59043e9753d6SMatthew G. Knepley   Vec             A, tv;
59053e9753d6SMatthew G. Knepley   DMField         coordField;
59063e9753d6SMatthew G. Knepley   PetscDS         prob, probAux = NULL;
5907e432b41dSStefano Zampini   PetscSection    section, globalSection, sectionAux;
59083e9753d6SMatthew G. Knepley   PetscScalar    *elemMat, *elemMatP, *elemMatD, *u, *u_t, *a = NULL;
59093e9753d6SMatthew G. Knepley   const PetscInt *cells;
59103e9753d6SMatthew G. Knepley   PetscInt        Nf, fieldI, fieldJ;
591128351e22SJed Brown   PetscInt        totDim, totDimAux = 0, cStart, cEnd, numCells, c;
5912e04ae0b4SMatthew G. Knepley   PetscBool       hasJac = PETSC_FALSE, hasPrec = PETSC_FALSE, hasDyn, hasFV = PETSC_FALSE, transform;
59133e9753d6SMatthew G. Knepley 
59143e9753d6SMatthew G. Knepley   PetscFunctionBegin;
5915af18b51aSmarkadams4   PetscCall(PetscLogEventBegin(DMPLEX_JacobianFEM, dm, 0, 0, 0));
5916ae3cf2c1SStefano Zampini   PetscCall(DMGetLocalSection(dm, &section));
5917ae3cf2c1SStefano Zampini   PetscCall(DMGetGlobalSection(dm, &globalSection));
5918ae3cf2c1SStefano Zampini   PetscCall(DMGetAuxiliaryVec(dm, key.label, key.value, key.part, &A));
5919ae3cf2c1SStefano Zampini   if (A) {
5920ae3cf2c1SStefano Zampini     PetscCall(VecGetDM(A, &dmAux));
5921ae3cf2c1SStefano Zampini     PetscCall(DMGetEnclosureRelation(dmAux, dm, &encAux));
5922ae3cf2c1SStefano Zampini     PetscCall(DMConvert(dmAux, DMPLEX, &plex));
5923ae3cf2c1SStefano Zampini     PetscCall(DMGetLocalSection(plex, &sectionAux));
5924ae3cf2c1SStefano Zampini     PetscCall(DMGetDS(dmAux, &probAux));
5925ae3cf2c1SStefano Zampini     PetscCall(PetscDSGetTotalDimension(probAux, &totDimAux));
5926ae3cf2c1SStefano Zampini   }
5927ae3cf2c1SStefano Zampini   PetscCall(DMGetCoordinateField(dm, &coordField));
5928e04ae0b4SMatthew G. Knepley   if (!cellIS) goto end;
59299566063dSJacob Faibussowitsch   PetscCall(ISGetPointRange(cellIS, &cStart, &cEnd, &cells));
5930437e83fbSMatthew G. Knepley   PetscCall(ISGetLocalSize(cellIS, &numCells));
5931437e83fbSMatthew G. Knepley   if (cStart >= cEnd) goto end;
59329566063dSJacob Faibussowitsch   PetscCall(DMHasBasisTransform(dm, &transform));
59339566063dSJacob Faibussowitsch   PetscCall(DMGetBasisTransformDM_Internal(dm, &tdm));
59349566063dSJacob Faibussowitsch   PetscCall(DMGetBasisTransformVec_Internal(dm, &tv));
593507218a29SMatthew G. Knepley   PetscCall(DMGetCellDS(dm, cells ? cells[cStart] : cStart, &prob, NULL));
59369566063dSJacob Faibussowitsch   PetscCall(PetscDSGetNumFields(prob, &Nf));
59379566063dSJacob Faibussowitsch   PetscCall(PetscDSGetTotalDimension(prob, &totDim));
59389566063dSJacob Faibussowitsch   PetscCall(PetscDSHasJacobian(prob, &hasJac));
59399566063dSJacob Faibussowitsch   PetscCall(PetscDSHasJacobianPreconditioner(prob, &hasPrec));
59403e9753d6SMatthew G. Knepley   /* user passed in the same matrix, avoid double contributions and
59413e9753d6SMatthew G. Knepley      only assemble the Jacobian */
59423e9753d6SMatthew G. Knepley   if (hasJac && Jac == JacP) hasPrec = PETSC_FALSE;
59439566063dSJacob Faibussowitsch   PetscCall(PetscDSHasDynamicJacobian(prob, &hasDyn));
59443e9753d6SMatthew G. Knepley   hasDyn = hasDyn && (X_tShift != 0.0) ? PETSC_TRUE : PETSC_FALSE;
594532603206SJames Wright   PetscCall(PetscMalloc5(numCells * totDim, &u, (X_t ? (size_t)numCells * totDim : 0), &u_t, (hasJac ? (size_t)numCells * totDim * totDim : 0), &elemMat, (hasPrec ? (size_t)numCells * totDim * totDim : 0), &elemMatP, (hasDyn ? (size_t)numCells * totDim * totDim : 0), &elemMatD));
59469566063dSJacob Faibussowitsch   if (dmAux) PetscCall(PetscMalloc1(numCells * totDimAux, &a));
59473e9753d6SMatthew G. Knepley   for (c = cStart; c < cEnd; ++c) {
59483e9753d6SMatthew G. Knepley     const PetscInt cell = cells ? cells[c] : c;
59493e9753d6SMatthew G. Knepley     const PetscInt cind = c - cStart;
59503e9753d6SMatthew G. Knepley     PetscScalar   *x = NULL, *x_t = NULL;
59513e9753d6SMatthew G. Knepley     PetscInt       i;
59523e9753d6SMatthew G. Knepley 
59539566063dSJacob Faibussowitsch     PetscCall(DMPlexVecGetClosure(dm, section, X, cell, NULL, &x));
59543e9753d6SMatthew G. Knepley     for (i = 0; i < totDim; ++i) u[cind * totDim + i] = x[i];
59559566063dSJacob Faibussowitsch     PetscCall(DMPlexVecRestoreClosure(dm, section, X, cell, NULL, &x));
59563e9753d6SMatthew G. Knepley     if (X_t) {
59579566063dSJacob Faibussowitsch       PetscCall(DMPlexVecGetClosure(dm, section, X_t, cell, NULL, &x_t));
59583e9753d6SMatthew G. Knepley       for (i = 0; i < totDim; ++i) u_t[cind * totDim + i] = x_t[i];
59599566063dSJacob Faibussowitsch       PetscCall(DMPlexVecRestoreClosure(dm, section, X_t, cell, NULL, &x_t));
59603e9753d6SMatthew G. Knepley     }
59613e9753d6SMatthew G. Knepley     if (dmAux) {
59623e9753d6SMatthew G. Knepley       PetscInt subcell;
59639566063dSJacob Faibussowitsch       PetscCall(DMGetEnclosurePoint(dmAux, dm, encAux, cell, &subcell));
59649566063dSJacob Faibussowitsch       PetscCall(DMPlexVecGetClosure(plex, sectionAux, A, subcell, NULL, &x));
59653e9753d6SMatthew G. Knepley       for (i = 0; i < totDimAux; ++i) a[cind * totDimAux + i] = x[i];
59669566063dSJacob Faibussowitsch       PetscCall(DMPlexVecRestoreClosure(plex, sectionAux, A, subcell, NULL, &x));
59673e9753d6SMatthew G. Knepley     }
59683e9753d6SMatthew G. Knepley   }
59699566063dSJacob Faibussowitsch   if (hasJac) PetscCall(PetscArrayzero(elemMat, numCells * totDim * totDim));
59709566063dSJacob Faibussowitsch   if (hasPrec) PetscCall(PetscArrayzero(elemMatP, numCells * totDim * totDim));
59719566063dSJacob Faibussowitsch   if (hasDyn) PetscCall(PetscArrayzero(elemMatD, numCells * totDim * totDim));
59723e9753d6SMatthew G. Knepley   for (fieldI = 0; fieldI < Nf; ++fieldI) {
59733e9753d6SMatthew G. Knepley     PetscClassId    id;
59743e9753d6SMatthew G. Knepley     PetscFE         fe;
59753e9753d6SMatthew G. Knepley     PetscQuadrature qGeom = NULL;
59763e9753d6SMatthew G. Knepley     PetscInt        Nb;
59773e9753d6SMatthew G. Knepley     /* Conforming batches */
59783e9753d6SMatthew G. Knepley     PetscInt numChunks, numBatches, numBlocks, Ne, blockSize, batchSize;
59793e9753d6SMatthew G. Knepley     /* Remainder */
59803e9753d6SMatthew G. Knepley     PetscInt     Nr, offset, Nq;
59813e9753d6SMatthew G. Knepley     PetscInt     maxDegree;
59823e9753d6SMatthew G. Knepley     PetscFEGeom *cgeomFEM, *chunkGeom = NULL, *remGeom = NULL;
59833e9753d6SMatthew G. Knepley 
59849566063dSJacob Faibussowitsch     PetscCall(PetscDSGetDiscretization(prob, fieldI, (PetscObject *)&fe));
59859566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetClassId((PetscObject)fe, &id));
59869371c9d4SSatish Balay     if (id == PETSCFV_CLASSID) {
59879371c9d4SSatish Balay       hasFV = PETSC_TRUE;
59889371c9d4SSatish Balay       continue;
59899371c9d4SSatish Balay     }
59909566063dSJacob Faibussowitsch     PetscCall(PetscFEGetDimension(fe, &Nb));
59919566063dSJacob Faibussowitsch     PetscCall(PetscFEGetTileSizes(fe, NULL, &numBlocks, NULL, &numBatches));
59929566063dSJacob Faibussowitsch     PetscCall(DMFieldGetDegree(coordField, cellIS, NULL, &maxDegree));
599348a46eb9SPierre Jolivet     if (maxDegree <= 1) PetscCall(DMFieldCreateDefaultQuadrature(coordField, cellIS, &qGeom));
59943e9753d6SMatthew G. Knepley     if (!qGeom) {
59959566063dSJacob Faibussowitsch       PetscCall(PetscFEGetQuadrature(fe, &qGeom));
59969566063dSJacob Faibussowitsch       PetscCall(PetscObjectReference((PetscObject)qGeom));
59973e9753d6SMatthew G. Knepley     }
59989566063dSJacob Faibussowitsch     PetscCall(PetscQuadratureGetData(qGeom, NULL, NULL, &Nq, NULL, NULL));
59999566063dSJacob Faibussowitsch     PetscCall(DMSNESGetFEGeom(coordField, cellIS, qGeom, PETSC_FALSE, &cgeomFEM));
60003e9753d6SMatthew G. Knepley     blockSize = Nb;
60013e9753d6SMatthew G. Knepley     batchSize = numBlocks * blockSize;
60029566063dSJacob Faibussowitsch     PetscCall(PetscFESetTileSizes(fe, blockSize, numBlocks, batchSize, numBatches));
60033e9753d6SMatthew G. Knepley     numChunks = numCells / (numBatches * batchSize);
60043e9753d6SMatthew G. Knepley     Ne        = numChunks * numBatches * batchSize;
60053e9753d6SMatthew G. Knepley     Nr        = numCells % (numBatches * batchSize);
60063e9753d6SMatthew G. Knepley     offset    = numCells - Nr;
60079566063dSJacob Faibussowitsch     PetscCall(PetscFEGeomGetChunk(cgeomFEM, 0, offset, &chunkGeom));
60089566063dSJacob Faibussowitsch     PetscCall(PetscFEGeomGetChunk(cgeomFEM, offset, numCells, &remGeom));
60093e9753d6SMatthew G. Knepley     for (fieldJ = 0; fieldJ < Nf; ++fieldJ) {
60106528b96dSMatthew G. Knepley       key.field = fieldI * Nf + fieldJ;
60113e9753d6SMatthew G. Knepley       if (hasJac) {
60129566063dSJacob Faibussowitsch         PetscCall(PetscFEIntegrateJacobian(prob, PETSCFE_JACOBIAN, key, Ne, chunkGeom, u, u_t, probAux, a, t, X_tShift, elemMat));
60138e3a54c0SPierre Jolivet         PetscCall(PetscFEIntegrateJacobian(prob, PETSCFE_JACOBIAN, key, Nr, remGeom, &u[offset * totDim], PetscSafePointerPlusOffset(u_t, offset * totDim), probAux, PetscSafePointerPlusOffset(a, offset * totDimAux), t, X_tShift, &elemMat[offset * totDim * totDim]));
60143e9753d6SMatthew G. Knepley       }
60153e9753d6SMatthew G. Knepley       if (hasPrec) {
60169566063dSJacob Faibussowitsch         PetscCall(PetscFEIntegrateJacobian(prob, PETSCFE_JACOBIAN_PRE, key, Ne, chunkGeom, u, u_t, probAux, a, t, X_tShift, elemMatP));
60178e3a54c0SPierre Jolivet         PetscCall(PetscFEIntegrateJacobian(prob, PETSCFE_JACOBIAN_PRE, key, Nr, remGeom, &u[offset * totDim], PetscSafePointerPlusOffset(u_t, offset * totDim), probAux, PetscSafePointerPlusOffset(a, offset * totDimAux), t, X_tShift, &elemMatP[offset * totDim * totDim]));
60183e9753d6SMatthew G. Knepley       }
60193e9753d6SMatthew G. Knepley       if (hasDyn) {
60209566063dSJacob Faibussowitsch         PetscCall(PetscFEIntegrateJacobian(prob, PETSCFE_JACOBIAN_DYN, key, Ne, chunkGeom, u, u_t, probAux, a, t, X_tShift, elemMatD));
60218e3a54c0SPierre Jolivet         PetscCall(PetscFEIntegrateJacobian(prob, PETSCFE_JACOBIAN_DYN, key, Nr, remGeom, &u[offset * totDim], PetscSafePointerPlusOffset(u_t, offset * totDim), probAux, PetscSafePointerPlusOffset(a, offset * totDimAux), t, X_tShift, &elemMatD[offset * totDim * totDim]));
60223e9753d6SMatthew G. Knepley       }
60233e9753d6SMatthew G. Knepley     }
60249566063dSJacob Faibussowitsch     PetscCall(PetscFEGeomRestoreChunk(cgeomFEM, offset, numCells, &remGeom));
60259566063dSJacob Faibussowitsch     PetscCall(PetscFEGeomRestoreChunk(cgeomFEM, 0, offset, &chunkGeom));
60269566063dSJacob Faibussowitsch     PetscCall(DMSNESRestoreFEGeom(coordField, cellIS, qGeom, PETSC_FALSE, &cgeomFEM));
60279566063dSJacob Faibussowitsch     PetscCall(PetscQuadratureDestroy(&qGeom));
60283e9753d6SMatthew G. Knepley   }
60293e9753d6SMatthew G. Knepley   /*   Add contribution from X_t */
60309371c9d4SSatish Balay   if (hasDyn) {
60319371c9d4SSatish Balay     for (c = 0; c < numCells * totDim * totDim; ++c) elemMat[c] += X_tShift * elemMatD[c];
60329371c9d4SSatish Balay   }
60333e9753d6SMatthew G. Knepley   if (hasFV) {
60343e9753d6SMatthew G. Knepley     PetscClassId id;
60353e9753d6SMatthew G. Knepley     PetscFV      fv;
60363e9753d6SMatthew G. Knepley     PetscInt     offsetI, NcI, NbI = 1, fc, f;
60373e9753d6SMatthew G. Knepley 
60383e9753d6SMatthew G. Knepley     for (fieldI = 0; fieldI < Nf; ++fieldI) {
60399566063dSJacob Faibussowitsch       PetscCall(PetscDSGetDiscretization(prob, fieldI, (PetscObject *)&fv));
60409566063dSJacob Faibussowitsch       PetscCall(PetscDSGetFieldOffset(prob, fieldI, &offsetI));
60419566063dSJacob Faibussowitsch       PetscCall(PetscObjectGetClassId((PetscObject)fv, &id));
60423e9753d6SMatthew G. Knepley       if (id != PETSCFV_CLASSID) continue;
60432f86f8c5SMatthew G. Knepley       /* Put in the weighted identity */
60449566063dSJacob Faibussowitsch       PetscCall(PetscFVGetNumComponents(fv, &NcI));
60453e9753d6SMatthew G. Knepley       for (c = cStart; c < cEnd; ++c) {
60463e9753d6SMatthew G. Knepley         const PetscInt cind    = c - cStart;
60473e9753d6SMatthew G. Knepley         const PetscInt eOffset = cind * totDim * totDim;
60482f86f8c5SMatthew G. Knepley         PetscReal      vol;
60492f86f8c5SMatthew G. Knepley 
60502f86f8c5SMatthew G. Knepley         PetscCall(DMPlexComputeCellGeometryFVM(dm, c, &vol, NULL, NULL));
60513e9753d6SMatthew G. Knepley         for (fc = 0; fc < NcI; ++fc) {
60523e9753d6SMatthew G. Knepley           for (f = 0; f < NbI; ++f) {
60533e9753d6SMatthew G. Knepley             const PetscInt i = offsetI + f * NcI + fc;
60543e9753d6SMatthew G. Knepley             if (hasPrec) {
60552f86f8c5SMatthew G. Knepley               if (hasJac) elemMat[eOffset + i * totDim + i] = vol;
60562f86f8c5SMatthew G. Knepley               elemMatP[eOffset + i * totDim + i] = vol;
60579371c9d4SSatish Balay             } else {
60582f86f8c5SMatthew G. Knepley               elemMat[eOffset + i * totDim + i] = vol;
60599371c9d4SSatish Balay             }
60603e9753d6SMatthew G. Knepley           }
60613e9753d6SMatthew G. Knepley         }
60623e9753d6SMatthew G. Knepley       }
60633e9753d6SMatthew G. Knepley     }
60643e9753d6SMatthew G. Knepley     /* No allocated space for FV stuff, so ignore the zero entries */
60659566063dSJacob Faibussowitsch     PetscCall(MatSetOption(JacP, MAT_IGNORE_ZERO_ENTRIES, PETSC_TRUE));
60663e9753d6SMatthew G. Knepley   }
60673e9753d6SMatthew G. Knepley   /* Insert values into matrix */
60683e9753d6SMatthew G. Knepley   for (c = cStart; c < cEnd; ++c) {
60693e9753d6SMatthew G. Knepley     const PetscInt cell = cells ? cells[c] : c;
60703e9753d6SMatthew G. Knepley     const PetscInt cind = c - cStart;
60713e9753d6SMatthew G. Knepley 
60723e9753d6SMatthew G. Knepley     /* Transform to global basis before insertion in Jacobian */
60739566063dSJacob Faibussowitsch     if (transform) PetscCall(DMPlexBasisTransformPointTensor_Internal(dm, tdm, tv, cell, PETSC_TRUE, totDim, &elemMat[cind * totDim * totDim]));
60743e9753d6SMatthew G. Knepley     if (hasPrec) {
60753e9753d6SMatthew G. Knepley       if (hasJac) {
60769566063dSJacob Faibussowitsch         if (mesh->printFEM > 1) PetscCall(DMPrintCellMatrix(cell, name, totDim, totDim, &elemMat[cind * totDim * totDim]));
6077e8e188d2SZach Atkins         PetscCall(DMPlexMatSetClosure_Internal(dm, section, globalSection, mesh->useMatClPerm, Jac, cell, &elemMat[cind * totDim * totDim], ADD_VALUES));
60783e9753d6SMatthew G. Knepley       }
60799566063dSJacob Faibussowitsch       if (mesh->printFEM > 1) PetscCall(DMPrintCellMatrix(cell, name, totDim, totDim, &elemMatP[cind * totDim * totDim]));
6080be62b2b4SMatthew G. Knepley       PetscCall(DMPlexMatSetClosure_Internal(dm, section, globalSection, mesh->useMatClPerm, JacP, cell, &elemMatP[cind * totDim * totDim], ADD_VALUES));
60813e9753d6SMatthew G. Knepley     } else {
60823e9753d6SMatthew G. Knepley       if (hasJac) {
60839566063dSJacob Faibussowitsch         if (mesh->printFEM > 1) PetscCall(DMPrintCellMatrix(cell, name, totDim, totDim, &elemMat[cind * totDim * totDim]));
6084e8e188d2SZach Atkins         PetscCall(DMPlexMatSetClosure_Internal(dm, section, globalSection, mesh->useMatClPerm, JacP, cell, &elemMat[cind * totDim * totDim], ADD_VALUES));
60853e9753d6SMatthew G. Knepley       }
60863e9753d6SMatthew G. Knepley     }
60873e9753d6SMatthew G. Knepley   }
60889566063dSJacob Faibussowitsch   PetscCall(ISRestorePointRange(cellIS, &cStart, &cEnd, &cells));
60899566063dSJacob Faibussowitsch   if (hasFV) PetscCall(MatSetOption(JacP, MAT_IGNORE_ZERO_ENTRIES, PETSC_FALSE));
60909566063dSJacob Faibussowitsch   PetscCall(PetscFree5(u, u_t, elemMat, elemMatP, elemMatD));
60913e9753d6SMatthew G. Knepley   if (dmAux) {
60929566063dSJacob Faibussowitsch     PetscCall(PetscFree(a));
60939566063dSJacob Faibussowitsch     PetscCall(DMDestroy(&plex));
60943e9753d6SMatthew G. Knepley   }
60953e9753d6SMatthew G. Knepley   /* Compute boundary integrals */
60969566063dSJacob Faibussowitsch   PetscCall(DMPlexComputeBdJacobian_Internal(dm, X, X_t, t, X_tShift, Jac, JacP, user));
60973e9753d6SMatthew G. Knepley   /* Assemble matrix */
60989371c9d4SSatish Balay end: {
6099e04ae0b4SMatthew G. Knepley   PetscBool assOp = hasJac && hasPrec ? PETSC_TRUE : PETSC_FALSE, gassOp;
6100e04ae0b4SMatthew G. Knepley 
6101462c564dSBarry Smith   PetscCallMPI(MPIU_Allreduce(&assOp, &gassOp, 1, MPIU_BOOL, MPI_LOR, PetscObjectComm((PetscObject)dm)));
61023e9753d6SMatthew G. Knepley   if (hasJac && hasPrec) {
61039566063dSJacob Faibussowitsch     PetscCall(MatAssemblyBegin(Jac, MAT_FINAL_ASSEMBLY));
61049566063dSJacob Faibussowitsch     PetscCall(MatAssemblyEnd(Jac, MAT_FINAL_ASSEMBLY));
61053e9753d6SMatthew G. Knepley   }
6106e04ae0b4SMatthew G. Knepley }
61079566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(JacP, MAT_FINAL_ASSEMBLY));
61089566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(JacP, MAT_FINAL_ASSEMBLY));
61099566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(DMPLEX_JacobianFEM, dm, 0, 0, 0));
61103ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
61113e9753d6SMatthew G. Knepley }
61123e9753d6SMatthew G. Knepley 
6113d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeJacobian_Hybrid_Internal(DM dm, PetscFormKey key[], IS cellIS, PetscReal t, PetscReal X_tShift, Vec locX, Vec locX_t, Mat Jac, Mat JacP, void *user)
6114d71ae5a4SJacob Faibussowitsch {
61153e9753d6SMatthew G. Knepley   DM_Plex        *mesh          = (DM_Plex *)dm->data;
61163e9753d6SMatthew G. Knepley   const char     *name          = "Hybrid Jacobian";
6117148442b3SMatthew G. Knepley   DM              dmAux[3]      = {NULL, NULL, NULL};
6118148442b3SMatthew G. Knepley   DMLabel         ghostLabel    = NULL;
61193e9753d6SMatthew G. Knepley   DM              plex          = NULL;
61203e9753d6SMatthew G. Knepley   DM              plexA         = NULL;
6121148442b3SMatthew G. Knepley   PetscDS         ds            = NULL;
612207218a29SMatthew G. Knepley   PetscDS         dsIn          = NULL;
6123148442b3SMatthew G. Knepley   PetscDS         dsAux[3]      = {NULL, NULL, NULL};
6124148442b3SMatthew G. Knepley   Vec             locA[3]       = {NULL, NULL, NULL};
612507218a29SMatthew G. Knepley   DM              dmScale[3]    = {NULL, NULL, NULL};
612607218a29SMatthew G. Knepley   PetscDS         dsScale[3]    = {NULL, NULL, NULL};
612707218a29SMatthew G. Knepley   Vec             locS[3]       = {NULL, NULL, NULL};
61283e9753d6SMatthew G. Knepley   PetscSection    section       = NULL;
6129148442b3SMatthew G. Knepley   PetscSection    sectionAux[3] = {NULL, NULL, NULL};
61303e9753d6SMatthew G. Knepley   DMField         coordField    = NULL;
613107218a29SMatthew G. Knepley   PetscScalar    *a[3]          = {NULL, NULL, NULL};
613207218a29SMatthew G. Knepley   PetscScalar    *s[3]          = {NULL, NULL, NULL};
613307218a29SMatthew G. Knepley   PetscScalar    *u             = NULL, *u_t;
613407218a29SMatthew G. Knepley   PetscScalar    *elemMatNeg, *elemMatPos, *elemMatCoh;
613507218a29SMatthew G. Knepley   PetscScalar    *elemMatNegP, *elemMatPosP, *elemMatCohP;
6136e432b41dSStefano Zampini   PetscSection    globalSection;
61373e9753d6SMatthew G. Knepley   IS              chunkIS;
61383e9753d6SMatthew G. Knepley   const PetscInt *cells;
61393e9753d6SMatthew G. Knepley   PetscInt       *faces;
61403e9753d6SMatthew G. Knepley   PetscInt        cStart, cEnd, numCells;
61413e2b0218SMatthew G. Knepley   PetscInt        Nf, fieldI, fieldJ, totDim, totDimIn, totDimAux[3], totDimScale[3], numChunks, cellChunkSize, chunk;
61421690c2aeSBarry Smith   PetscInt        maxDegree  = PETSC_INT_MAX;
61433e9753d6SMatthew G. Knepley   PetscQuadrature affineQuad = NULL, *quads = NULL;
61443e9753d6SMatthew G. Knepley   PetscFEGeom    *affineGeom = NULL, **geoms = NULL;
6145e432b41dSStefano Zampini   PetscBool       hasBdJac, hasBdPrec;
61463e9753d6SMatthew G. Knepley 
61473e9753d6SMatthew G. Knepley   PetscFunctionBegin;
61483cc88e6aSStefano Zampini   PetscCall(PetscLogEventBegin(DMPLEX_JacobianFEM, dm, 0, 0, 0));
61493cc88e6aSStefano Zampini   if (!cellIS) goto end;
6150437e83fbSMatthew G. Knepley   PetscCall(ISGetPointRange(cellIS, &cStart, &cEnd, &cells));
6151437e83fbSMatthew G. Knepley   PetscCall(ISGetLocalSize(cellIS, &numCells));
61523cc88e6aSStefano Zampini   if (cStart >= cEnd) goto end;
61535fedec97SMatthew G. Knepley   if ((key[0].label == key[1].label) && (key[0].value == key[1].value) && (key[0].part == key[1].part)) {
61545fedec97SMatthew G. Knepley     const char *name;
61559566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetName((PetscObject)key[0].label, &name));
615663a3b9bcSJacob Faibussowitsch     SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Form keys for each side of a cohesive surface must be different (%s, %" PetscInt_FMT ", %" PetscInt_FMT ")", name, key[0].value, key[0].part);
61575fedec97SMatthew G. Knepley   }
61589566063dSJacob Faibussowitsch   PetscCall(DMConvert(dm, DMPLEX, &plex));
6159b98a7184SJames Wright   PetscCall(DMGetLocalSection(dm, &section));
61609566063dSJacob Faibussowitsch   PetscCall(DMGetGlobalSection(dm, &globalSection));
61619566063dSJacob Faibussowitsch   PetscCall(DMGetLabel(dm, "ghost", &ghostLabel));
616207218a29SMatthew G. Knepley   PetscCall(DMGetCellDS(dm, cells ? cells[cStart] : cStart, &ds, &dsIn));
61639566063dSJacob Faibussowitsch   PetscCall(PetscDSGetNumFields(ds, &Nf));
61649566063dSJacob Faibussowitsch   PetscCall(PetscDSGetTotalDimension(ds, &totDim));
616507218a29SMatthew G. Knepley   PetscCall(PetscDSGetTotalDimension(dsIn, &totDimIn));
61669566063dSJacob Faibussowitsch   PetscCall(PetscDSHasBdJacobian(ds, &hasBdJac));
61679566063dSJacob Faibussowitsch   PetscCall(PetscDSHasBdJacobianPreconditioner(ds, &hasBdPrec));
61689566063dSJacob Faibussowitsch   PetscCall(DMGetAuxiliaryVec(dm, key[2].label, key[2].value, key[2].part, &locA[2]));
6169148442b3SMatthew G. Knepley   if (locA[2]) {
61701059d808SMatthew G. Knepley     const PetscInt cellStart = cells ? cells[cStart] : cStart;
61711059d808SMatthew G. Knepley 
61729566063dSJacob Faibussowitsch     PetscCall(VecGetDM(locA[2], &dmAux[2]));
61739566063dSJacob Faibussowitsch     PetscCall(DMConvert(dmAux[2], DMPLEX, &plexA));
6174b98a7184SJames Wright     PetscCall(DMGetLocalSection(dmAux[2], &sectionAux[2]));
617507218a29SMatthew G. Knepley     PetscCall(DMGetCellDS(dmAux[2], cellStart, &dsAux[2], NULL));
61769566063dSJacob Faibussowitsch     PetscCall(PetscDSGetTotalDimension(dsAux[2], &totDimAux[2]));
6177148442b3SMatthew G. Knepley     {
6178148442b3SMatthew G. Knepley       const PetscInt *cone;
6179148442b3SMatthew G. Knepley       PetscInt        c;
6180148442b3SMatthew G. Knepley 
61811059d808SMatthew G. Knepley       PetscCall(DMPlexGetCone(dm, cellStart, &cone));
6182148442b3SMatthew G. Knepley       for (c = 0; c < 2; ++c) {
6183148442b3SMatthew G. Knepley         const PetscInt *support;
6184148442b3SMatthew G. Knepley         PetscInt        ssize, s;
6185148442b3SMatthew G. Knepley 
61869566063dSJacob Faibussowitsch         PetscCall(DMPlexGetSupport(dm, cone[c], &support));
61879566063dSJacob Faibussowitsch         PetscCall(DMPlexGetSupportSize(dm, cone[c], &ssize));
61881059d808SMatthew G. Knepley         PetscCheck(ssize == 2, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Face %" PetscInt_FMT " from cell %" PetscInt_FMT " has support size %" PetscInt_FMT " != 2", cone[c], cellStart, ssize);
61891059d808SMatthew G. Knepley         if (support[0] == cellStart) s = 1;
61901059d808SMatthew G. Knepley         else if (support[1] == cellStart) s = 0;
61911059d808SMatthew G. Knepley         else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Face %" PetscInt_FMT " does not have cell %" PetscInt_FMT " in its support", cone[c], cellStart);
61929566063dSJacob Faibussowitsch         PetscCall(DMGetAuxiliaryVec(dm, key[c].label, key[c].value, key[c].part, &locA[c]));
61939566063dSJacob Faibussowitsch         if (locA[c]) PetscCall(VecGetDM(locA[c], &dmAux[c]));
6194ad540459SPierre Jolivet         else dmAux[c] = dmAux[2];
619507218a29SMatthew G. Knepley         PetscCall(DMGetCellDS(dmAux[c], support[s], &dsAux[c], NULL));
61969566063dSJacob Faibussowitsch         PetscCall(PetscDSGetTotalDimension(dsAux[c], &totDimAux[c]));
6197148442b3SMatthew G. Knepley       }
6198148442b3SMatthew G. Knepley     }
61993e9753d6SMatthew G. Knepley   }
620007218a29SMatthew G. Knepley   /* Handle mass matrix scaling
620107218a29SMatthew G. Knepley        The field in key[2] is the field to be scaled, and the scaling field is the first in the dsScale */
620207218a29SMatthew G. Knepley   PetscCall(DMGetAuxiliaryVec(dm, key[2].label, -key[2].value, key[2].part, &locS[2]));
620307218a29SMatthew G. Knepley   if (locS[2]) {
62043e2b0218SMatthew G. Knepley     const PetscInt cellStart = cells ? cells[cStart] : cStart;
620507218a29SMatthew G. Knepley     PetscInt       Nb, Nbs;
620607218a29SMatthew G. Knepley 
620707218a29SMatthew G. Knepley     PetscCall(VecGetDM(locS[2], &dmScale[2]));
620807218a29SMatthew G. Knepley     PetscCall(DMGetCellDS(dmScale[2], cells ? cells[cStart] : cStart, &dsScale[2], NULL));
62093e2b0218SMatthew G. Knepley     PetscCall(PetscDSGetTotalDimension(dsScale[2], &totDimScale[2]));
621007218a29SMatthew G. Knepley     // BRAD: This is not set correctly
621107218a29SMatthew G. Knepley     key[2].field = 2;
621207218a29SMatthew G. Knepley     PetscCall(PetscDSGetFieldSize(ds, key[2].field, &Nb));
621307218a29SMatthew G. Knepley     PetscCall(PetscDSGetFieldSize(dsScale[2], 0, &Nbs));
621407218a29SMatthew G. Knepley     PetscCheck(Nb == Nbs, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "Field %" PetscInt_FMT " of size %" PetscInt_FMT " cannot be scaled by field of size %" PetscInt_FMT, key[2].field, Nb, Nbs);
62153e2b0218SMatthew G. Knepley     {
62163e2b0218SMatthew G. Knepley       const PetscInt *cone;
62173e2b0218SMatthew G. Knepley       PetscInt        c;
62183e2b0218SMatthew G. Knepley 
62193e2b0218SMatthew G. Knepley       locS[1] = locS[0] = locS[2];
62203e2b0218SMatthew G. Knepley       dmScale[1] = dmScale[0] = dmScale[2];
62213e2b0218SMatthew G. Knepley       PetscCall(DMPlexGetCone(dm, cellStart, &cone));
62223e2b0218SMatthew G. Knepley       for (c = 0; c < 2; ++c) {
62233e2b0218SMatthew G. Knepley         const PetscInt *support;
62243e2b0218SMatthew G. Knepley         PetscInt        ssize, s;
62253e2b0218SMatthew G. Knepley 
62263e2b0218SMatthew G. Knepley         PetscCall(DMPlexGetSupport(dm, cone[c], &support));
62273e2b0218SMatthew G. Knepley         PetscCall(DMPlexGetSupportSize(dm, cone[c], &ssize));
62283e2b0218SMatthew G. Knepley         PetscCheck(ssize == 2, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Face %" PetscInt_FMT " from cell %" PetscInt_FMT " has support size %" PetscInt_FMT " != 2", cone[c], cellStart, ssize);
62293e2b0218SMatthew G. Knepley         if (support[0] == cellStart) s = 1;
62303e2b0218SMatthew G. Knepley         else if (support[1] == cellStart) s = 0;
62313e2b0218SMatthew G. Knepley         else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Face %" PetscInt_FMT " does not have cell %" PetscInt_FMT " in its support", cone[c], cellStart);
62323e2b0218SMatthew G. Knepley         PetscCall(DMGetCellDS(dmScale[c], support[s], &dsScale[c], NULL));
62333e2b0218SMatthew G. Knepley         PetscCall(PetscDSGetTotalDimension(dsScale[c], &totDimScale[c]));
62343e2b0218SMatthew G. Knepley       }
62353e2b0218SMatthew G. Knepley     }
623607218a29SMatthew G. Knepley   }
623707218a29SMatthew G. Knepley   /* 2: Setup geometric data */
62389566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateField(dm, &coordField));
62399566063dSJacob Faibussowitsch   PetscCall(DMFieldGetDegree(coordField, cellIS, NULL, &maxDegree));
62403e9753d6SMatthew G. Knepley   if (maxDegree > 1) {
62413e9753d6SMatthew G. Knepley     PetscInt f;
62429566063dSJacob Faibussowitsch     PetscCall(PetscCalloc2(Nf, &quads, Nf, &geoms));
62433e9753d6SMatthew G. Knepley     for (f = 0; f < Nf; ++f) {
62443e9753d6SMatthew G. Knepley       PetscFE fe;
62453e9753d6SMatthew G. Knepley 
62469566063dSJacob Faibussowitsch       PetscCall(PetscDSGetDiscretization(ds, f, (PetscObject *)&fe));
62473e9753d6SMatthew G. Knepley       if (fe) {
62489566063dSJacob Faibussowitsch         PetscCall(PetscFEGetQuadrature(fe, &quads[f]));
62499566063dSJacob Faibussowitsch         PetscCall(PetscObjectReference((PetscObject)quads[f]));
62503e9753d6SMatthew G. Knepley       }
62513e9753d6SMatthew G. Knepley     }
62523e9753d6SMatthew G. Knepley   }
625307218a29SMatthew G. Knepley   /* Loop over chunks */
62543e9753d6SMatthew G. Knepley   cellChunkSize = numCells;
62553e9753d6SMatthew G. Knepley   numChunks     = !numCells ? 0 : PetscCeilReal(((PetscReal)numCells) / cellChunkSize);
625607218a29SMatthew G. Knepley   PetscCall(PetscCalloc1(2 * cellChunkSize, &faces));
6257a4158a15SMatthew G. Knepley   PetscCall(ISCreateGeneral(PETSC_COMM_SELF, 1 * cellChunkSize, faces, PETSC_USE_POINTER, &chunkIS));
625807218a29SMatthew G. Knepley   /* Extract field coefficients */
625907218a29SMatthew G. Knepley   /* NOTE This needs the end cap faces to have identical orientations */
626007218a29SMatthew G. Knepley   PetscCall(DMPlexGetHybridCellFields(dm, cellIS, locX, locX_t, locA[2], &u, &u_t, &a[2]));
626107218a29SMatthew G. Knepley   PetscCall(DMPlexGetHybridFields(dm, dmAux, dsAux, cellIS, locA, PETSC_TRUE, a));
62628bf0a22dSMatthew G. Knepley   PetscCall(DMPlexGetHybridFields(dm, dmScale, dsScale, cellIS, locS, PETSC_TRUE, s));
626307218a29SMatthew G. Knepley   PetscCall(DMGetWorkArray(dm, hasBdJac ? cellChunkSize * totDim * totDim : 0, MPIU_SCALAR, &elemMatNeg));
626407218a29SMatthew G. Knepley   PetscCall(DMGetWorkArray(dm, hasBdJac ? cellChunkSize * totDim * totDim : 0, MPIU_SCALAR, &elemMatPos));
626507218a29SMatthew G. Knepley   PetscCall(DMGetWorkArray(dm, hasBdJac ? cellChunkSize * totDim * totDim : 0, MPIU_SCALAR, &elemMatCoh));
626607218a29SMatthew G. Knepley   PetscCall(DMGetWorkArray(dm, hasBdPrec ? cellChunkSize * totDim * totDim : 0, MPIU_SCALAR, &elemMatNegP));
626707218a29SMatthew G. Knepley   PetscCall(DMGetWorkArray(dm, hasBdPrec ? cellChunkSize * totDim * totDim : 0, MPIU_SCALAR, &elemMatPosP));
626807218a29SMatthew G. Knepley   PetscCall(DMGetWorkArray(dm, hasBdPrec ? cellChunkSize * totDim * totDim : 0, MPIU_SCALAR, &elemMatCohP));
62693e9753d6SMatthew G. Knepley   for (chunk = 0; chunk < numChunks; ++chunk) {
62703e9753d6SMatthew G. Knepley     PetscInt cS = cStart + chunk * cellChunkSize, cE = PetscMin(cS + cellChunkSize, cEnd), numCells = cE - cS, c;
62713e9753d6SMatthew G. Knepley 
627207218a29SMatthew G. Knepley     if (hasBdJac) {
627307218a29SMatthew G. Knepley       PetscCall(PetscArrayzero(elemMatNeg, cellChunkSize * totDim * totDim));
627407218a29SMatthew G. Knepley       PetscCall(PetscArrayzero(elemMatPos, cellChunkSize * totDim * totDim));
627507218a29SMatthew G. Knepley       PetscCall(PetscArrayzero(elemMatCoh, cellChunkSize * totDim * totDim));
627607218a29SMatthew G. Knepley     }
627707218a29SMatthew G. Knepley     if (hasBdPrec) {
627807218a29SMatthew G. Knepley       PetscCall(PetscArrayzero(elemMatNegP, cellChunkSize * totDim * totDim));
627907218a29SMatthew G. Knepley       PetscCall(PetscArrayzero(elemMatPosP, cellChunkSize * totDim * totDim));
628007218a29SMatthew G. Knepley       PetscCall(PetscArrayzero(elemMatCohP, cellChunkSize * totDim * totDim));
628107218a29SMatthew G. Knepley     }
62823e9753d6SMatthew G. Knepley     /* Get faces */
62833e9753d6SMatthew G. Knepley     for (c = cS; c < cE; ++c) {
62843e9753d6SMatthew G. Knepley       const PetscInt  cell = cells ? cells[c] : c;
62853e9753d6SMatthew G. Knepley       const PetscInt *cone;
62869566063dSJacob Faibussowitsch       PetscCall(DMPlexGetCone(plex, cell, &cone));
628707218a29SMatthew G. Knepley       faces[(c - cS) * 2 + 0] = cone[0];
628807218a29SMatthew G. Knepley       faces[(c - cS) * 2 + 1] = cone[1];
62893e9753d6SMatthew G. Knepley     }
629007218a29SMatthew G. Knepley     PetscCall(ISGeneralSetIndices(chunkIS, 2 * cellChunkSize, faces, PETSC_USE_POINTER));
62913e9753d6SMatthew G. Knepley     if (maxDegree <= 1) {
62929566063dSJacob Faibussowitsch       if (!affineQuad) PetscCall(DMFieldCreateDefaultQuadrature(coordField, chunkIS, &affineQuad));
62939566063dSJacob Faibussowitsch       if (affineQuad) PetscCall(DMSNESGetFEGeom(coordField, chunkIS, affineQuad, PETSC_TRUE, &affineGeom));
62943e9753d6SMatthew G. Knepley     } else {
62953e9753d6SMatthew G. Knepley       PetscInt f;
62963e9753d6SMatthew G. Knepley       for (f = 0; f < Nf; ++f) {
62979566063dSJacob Faibussowitsch         if (quads[f]) PetscCall(DMSNESGetFEGeom(coordField, chunkIS, quads[f], PETSC_TRUE, &geoms[f]));
62983e9753d6SMatthew G. Knepley       }
62993e9753d6SMatthew G. Knepley     }
63003e9753d6SMatthew G. Knepley 
63013e9753d6SMatthew G. Knepley     for (fieldI = 0; fieldI < Nf; ++fieldI) {
63023e9753d6SMatthew G. Knepley       PetscFE         feI;
63033e9753d6SMatthew G. Knepley       PetscFEGeom    *geom      = affineGeom ? affineGeom : geoms[fieldI];
63043e9753d6SMatthew G. Knepley       PetscFEGeom    *chunkGeom = NULL, *remGeom = NULL;
63053e9753d6SMatthew G. Knepley       PetscQuadrature quad = affineQuad ? affineQuad : quads[fieldI];
63063e9753d6SMatthew G. Knepley       PetscInt        numChunks, numBatches, batchSize, numBlocks, blockSize, Ne, Nr, offset, Nq, Nb;
63075fedec97SMatthew G. Knepley       PetscBool       isCohesiveField;
63083e9753d6SMatthew G. Knepley 
63099566063dSJacob Faibussowitsch       PetscCall(PetscDSGetDiscretization(ds, fieldI, (PetscObject *)&feI));
63103e9753d6SMatthew G. Knepley       if (!feI) continue;
63119566063dSJacob Faibussowitsch       PetscCall(PetscFEGetTileSizes(feI, NULL, &numBlocks, NULL, &numBatches));
63129566063dSJacob Faibussowitsch       PetscCall(PetscQuadratureGetData(quad, NULL, NULL, &Nq, NULL, NULL));
63139566063dSJacob Faibussowitsch       PetscCall(PetscFEGetDimension(feI, &Nb));
63143e9753d6SMatthew G. Knepley       blockSize = Nb;
63153e9753d6SMatthew G. Knepley       batchSize = numBlocks * blockSize;
63169566063dSJacob Faibussowitsch       PetscCall(PetscFESetTileSizes(feI, blockSize, numBlocks, batchSize, numBatches));
63173e9753d6SMatthew G. Knepley       numChunks = numCells / (numBatches * batchSize);
63183e9753d6SMatthew G. Knepley       Ne        = numChunks * numBatches * batchSize;
63193e9753d6SMatthew G. Knepley       Nr        = numCells % (numBatches * batchSize);
63203e9753d6SMatthew G. Knepley       offset    = numCells - Nr;
632107218a29SMatthew G. Knepley       PetscCall(PetscFEGeomGetChunk(geom, 0, offset * 2, &chunkGeom));
632207218a29SMatthew G. Knepley       PetscCall(PetscFEGeomGetChunk(geom, offset * 2, numCells * 2, &remGeom));
63239566063dSJacob Faibussowitsch       PetscCall(PetscDSGetCohesive(ds, fieldI, &isCohesiveField));
63243e9753d6SMatthew G. Knepley       for (fieldJ = 0; fieldJ < Nf; ++fieldJ) {
63253e9753d6SMatthew G. Knepley         PetscFE feJ;
63263e9753d6SMatthew G. Knepley 
63279566063dSJacob Faibussowitsch         PetscCall(PetscDSGetDiscretization(ds, fieldJ, (PetscObject *)&feJ));
63283e9753d6SMatthew G. Knepley         if (!feJ) continue;
6329148442b3SMatthew G. Knepley         key[0].field = fieldI * Nf + fieldJ;
6330148442b3SMatthew G. Knepley         key[1].field = fieldI * Nf + fieldJ;
63315fedec97SMatthew G. Knepley         key[2].field = fieldI * Nf + fieldJ;
6332148442b3SMatthew G. Knepley         if (hasBdJac) {
633307218a29SMatthew G. Knepley           PetscCall(PetscFEIntegrateHybridJacobian(ds, dsIn, PETSCFE_JACOBIAN, key[0], 0, Ne, chunkGeom, u, u_t, dsAux[0], a[0], t, X_tShift, elemMatNeg));
63348e3a54c0SPierre Jolivet           PetscCall(PetscFEIntegrateHybridJacobian(ds, dsIn, PETSCFE_JACOBIAN, key[0], 0, Nr, remGeom, &u[offset * totDimIn], PetscSafePointerPlusOffset(u_t, offset * totDimIn), dsAux[0], PetscSafePointerPlusOffset(a[0], offset * totDimAux[0]), t, X_tShift, &elemMatNeg[offset * totDim * totDim]));
633507218a29SMatthew G. Knepley           PetscCall(PetscFEIntegrateHybridJacobian(ds, dsIn, PETSCFE_JACOBIAN, key[1], 1, Ne, chunkGeom, u, u_t, dsAux[1], a[1], t, X_tShift, elemMatPos));
63368e3a54c0SPierre Jolivet           PetscCall(PetscFEIntegrateHybridJacobian(ds, dsIn, PETSCFE_JACOBIAN, key[1], 1, Nr, remGeom, &u[offset * totDimIn], PetscSafePointerPlusOffset(u_t, offset * totDimIn), dsAux[1], PetscSafePointerPlusOffset(a[1], offset * totDimAux[1]), t, X_tShift, &elemMatPos[offset * totDim * totDim]));
6337148442b3SMatthew G. Knepley         }
6338148442b3SMatthew G. Knepley         if (hasBdPrec) {
633907218a29SMatthew G. Knepley           PetscCall(PetscFEIntegrateHybridJacobian(ds, dsIn, PETSCFE_JACOBIAN_PRE, key[0], 0, Ne, chunkGeom, u, u_t, dsAux[0], a[0], t, X_tShift, elemMatNegP));
63408e3a54c0SPierre Jolivet           PetscCall(PetscFEIntegrateHybridJacobian(ds, dsIn, PETSCFE_JACOBIAN_PRE, key[0], 0, Nr, remGeom, &u[offset * totDimIn], PetscSafePointerPlusOffset(u_t, offset * totDimIn), dsAux[0], &a[0][offset * totDimAux[0]], t, X_tShift, &elemMatNegP[offset * totDim * totDim]));
634107218a29SMatthew G. Knepley           PetscCall(PetscFEIntegrateHybridJacobian(ds, dsIn, PETSCFE_JACOBIAN_PRE, key[1], 1, Ne, chunkGeom, u, u_t, dsAux[1], a[1], t, X_tShift, elemMatPosP));
63428e3a54c0SPierre Jolivet           PetscCall(PetscFEIntegrateHybridJacobian(ds, dsIn, PETSCFE_JACOBIAN_PRE, key[1], 1, Nr, remGeom, &u[offset * totDimIn], PetscSafePointerPlusOffset(u_t, offset * totDimIn), dsAux[1], &a[1][offset * totDimAux[1]], t, X_tShift, &elemMatPosP[offset * totDim * totDim]));
6343148442b3SMatthew G. Knepley         }
63445fedec97SMatthew G. Knepley         if (hasBdJac) {
634507218a29SMatthew G. Knepley           PetscCall(PetscFEIntegrateHybridJacobian(ds, dsIn, PETSCFE_JACOBIAN, key[2], 2, Ne, chunkGeom, u, u_t, dsAux[2], a[2], t, X_tShift, elemMatCoh));
63468e3a54c0SPierre Jolivet           PetscCall(PetscFEIntegrateHybridJacobian(ds, dsIn, PETSCFE_JACOBIAN, key[2], 2, Nr, remGeom, &u[offset * totDimIn], PetscSafePointerPlusOffset(u_t, offset * totDimIn), dsAux[2], PetscSafePointerPlusOffset(a[2], offset * totDimAux[2]), t, X_tShift, &elemMatCoh[offset * totDim * totDim]));
6347148442b3SMatthew G. Knepley         }
63485fedec97SMatthew G. Knepley         if (hasBdPrec) {
634907218a29SMatthew G. Knepley           PetscCall(PetscFEIntegrateHybridJacobian(ds, dsIn, PETSCFE_JACOBIAN_PRE, key[2], 2, Ne, chunkGeom, u, u_t, dsAux[2], a[2], t, X_tShift, elemMatCohP));
63508e3a54c0SPierre Jolivet           PetscCall(PetscFEIntegrateHybridJacobian(ds, dsIn, PETSCFE_JACOBIAN_PRE, key[2], 2, Nr, remGeom, &u[offset * totDimIn], PetscSafePointerPlusOffset(u_t, offset * totDimIn), dsAux[2], &a[2][offset * totDimAux[2]], t, X_tShift, &elemMatCohP[offset * totDim * totDim]));
63513e9753d6SMatthew G. Knepley         }
63523e9753d6SMatthew G. Knepley       }
63539566063dSJacob Faibussowitsch       PetscCall(PetscFEGeomRestoreChunk(geom, offset, numCells, &remGeom));
63549566063dSJacob Faibussowitsch       PetscCall(PetscFEGeomRestoreChunk(geom, 0, offset, &chunkGeom));
63553e9753d6SMatthew G. Knepley     }
63563e9753d6SMatthew G. Knepley     /* Insert values into matrix */
63573e9753d6SMatthew G. Knepley     for (c = cS; c < cE; ++c) {
63583e9753d6SMatthew G. Knepley       const PetscInt cell = cells ? cells[c] : c;
635907218a29SMatthew G. Knepley       const PetscInt cind = c - cS, coff = cind * totDim * totDim;
636007218a29SMatthew G. Knepley       PetscInt       i, j;
63613e9753d6SMatthew G. Knepley 
636207218a29SMatthew G. Knepley       /* Scale element values */
636307218a29SMatthew G. Knepley       if (locS[0]) {
63643e2b0218SMatthew G. Knepley         PetscInt  Nb, soff = cind * totDimScale[0], off = 0;
636507218a29SMatthew G. Knepley         PetscBool cohesive;
636607218a29SMatthew G. Knepley 
636707218a29SMatthew G. Knepley         for (fieldI = 0; fieldI < Nf; ++fieldI) {
636807218a29SMatthew G. Knepley           PetscCall(PetscDSGetFieldSize(ds, fieldI, &Nb));
636907218a29SMatthew G. Knepley           PetscCall(PetscDSGetCohesive(ds, fieldI, &cohesive));
637007218a29SMatthew G. Knepley 
637107218a29SMatthew G. Knepley           if (fieldI == key[2].field) {
637207218a29SMatthew G. Knepley             PetscCheck(cohesive, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Scaling should not happen for face fields");
63738bf0a22dSMatthew G. Knepley             for (i = 0; i < Nb; ++i) {
637407218a29SMatthew G. Knepley               for (j = 0; j < totDim; ++j) elemMatCoh[coff + (off + i) * totDim + j] += s[0][soff + i] * elemMatNeg[coff + (off + i) * totDim + j] + s[1][soff + i] * elemMatPos[coff + (off + i) * totDim + j];
63758bf0a22dSMatthew G. Knepley               if (hasBdPrec)
63768bf0a22dSMatthew G. Knepley                 for (j = 0; j < totDim; ++j) elemMatCohP[coff + (off + i) * totDim + j] += s[0][soff + i] * elemMatNegP[coff + (off + i) * totDim + j] + s[1][soff + i] * elemMatPosP[coff + (off + i) * totDim + j];
63778bf0a22dSMatthew G. Knepley             }
637807218a29SMatthew G. Knepley             off += Nb;
637907218a29SMatthew G. Knepley           } else {
638007218a29SMatthew G. Knepley             const PetscInt N = cohesive ? Nb : Nb * 2;
638107218a29SMatthew G. Knepley 
63828bf0a22dSMatthew G. Knepley             for (i = 0; i < N; ++i) {
638307218a29SMatthew G. Knepley               for (j = 0; j < totDim; ++j) elemMatCoh[coff + (off + i) * totDim + j] += elemMatNeg[coff + (off + i) * totDim + j] + elemMatPos[coff + (off + i) * totDim + j];
63848bf0a22dSMatthew G. Knepley               if (hasBdPrec)
63858bf0a22dSMatthew G. Knepley                 for (j = 0; j < totDim; ++j) elemMatCohP[coff + (off + i) * totDim + j] += elemMatNegP[coff + (off + i) * totDim + j] + elemMatPosP[coff + (off + i) * totDim + j];
63868bf0a22dSMatthew G. Knepley             }
638707218a29SMatthew G. Knepley             off += N;
638807218a29SMatthew G. Knepley           }
638907218a29SMatthew G. Knepley         }
639007218a29SMatthew G. Knepley       } else {
639107218a29SMatthew G. Knepley         for (i = 0; i < totDim * totDim; ++i) elemMatCoh[coff + i] += elemMatNeg[coff + i] + elemMatPos[coff + i];
63928bf0a22dSMatthew G. Knepley         if (hasBdPrec)
63938bf0a22dSMatthew G. Knepley           for (i = 0; i < totDim * totDim; ++i) elemMatCohP[coff + i] += elemMatNegP[coff + i] + elemMatPosP[coff + i];
639407218a29SMatthew G. Knepley       }
63953e9753d6SMatthew G. Knepley       if (hasBdPrec) {
63963e9753d6SMatthew G. Knepley         if (hasBdJac) {
639707218a29SMatthew G. Knepley           if (mesh->printFEM > 1) PetscCall(DMPrintCellMatrix(cell, name, totDim, totDim, &elemMatCoh[cind * totDim * totDim]));
6398e8e188d2SZach Atkins           PetscCall(DMPlexMatSetClosure_Internal(plex, section, globalSection, mesh->useMatClPerm, Jac, cell, &elemMatCoh[cind * totDim * totDim], ADD_VALUES));
63993e9753d6SMatthew G. Knepley         }
640007218a29SMatthew G. Knepley         if (mesh->printFEM > 1) PetscCall(DMPrintCellMatrix(cell, name, totDim, totDim, &elemMatCohP[cind * totDim * totDim]));
640107218a29SMatthew G. Knepley         PetscCall(DMPlexMatSetClosure(plex, section, globalSection, JacP, cell, &elemMatCohP[cind * totDim * totDim], ADD_VALUES));
64023e9753d6SMatthew G. Knepley       } else if (hasBdJac) {
640307218a29SMatthew G. Knepley         if (mesh->printFEM > 1) PetscCall(DMPrintCellMatrix(cell, name, totDim, totDim, &elemMatCoh[cind * totDim * totDim]));
6404e8e188d2SZach Atkins         PetscCall(DMPlexMatSetClosure_Internal(plex, section, globalSection, mesh->useMatClPerm, JacP, cell, &elemMatCoh[cind * totDim * totDim], ADD_VALUES));
64053e9753d6SMatthew G. Knepley       }
64063e9753d6SMatthew G. Knepley     }
64073e9753d6SMatthew G. Knepley   }
64089566063dSJacob Faibussowitsch   PetscCall(DMPlexRestoreCellFields(dm, cellIS, locX, locX_t, locA[2], &u, &u_t, &a[2]));
640907218a29SMatthew G. Knepley   PetscCall(DMPlexRestoreHybridFields(dm, dmAux, dsAux, cellIS, locA, PETSC_TRUE, a));
641007218a29SMatthew G. Knepley   PetscCall(DMRestoreWorkArray(dm, hasBdJac ? cellChunkSize * totDim * totDim : 0, MPIU_SCALAR, &elemMatNeg));
641107218a29SMatthew G. Knepley   PetscCall(DMRestoreWorkArray(dm, hasBdJac ? cellChunkSize * totDim * totDim : 0, MPIU_SCALAR, &elemMatPos));
641207218a29SMatthew G. Knepley   PetscCall(DMRestoreWorkArray(dm, hasBdJac ? cellChunkSize * totDim * totDim : 0, MPIU_SCALAR, &elemMatCoh));
641307218a29SMatthew G. Knepley   PetscCall(DMRestoreWorkArray(dm, hasBdPrec ? cellChunkSize * totDim * totDim : 0, MPIU_SCALAR, &elemMatNegP));
641407218a29SMatthew G. Knepley   PetscCall(DMRestoreWorkArray(dm, hasBdPrec ? cellChunkSize * totDim * totDim : 0, MPIU_SCALAR, &elemMatPosP));
641507218a29SMatthew G. Knepley   PetscCall(DMRestoreWorkArray(dm, hasBdPrec ? cellChunkSize * totDim * totDim : 0, MPIU_SCALAR, &elemMatCohP));
64169566063dSJacob Faibussowitsch   PetscCall(PetscFree(faces));
64179566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&chunkIS));
64189566063dSJacob Faibussowitsch   PetscCall(ISRestorePointRange(cellIS, &cStart, &cEnd, &cells));
64193e9753d6SMatthew G. Knepley   if (maxDegree <= 1) {
64209566063dSJacob Faibussowitsch     PetscCall(DMSNESRestoreFEGeom(coordField, cellIS, affineQuad, PETSC_FALSE, &affineGeom));
64219566063dSJacob Faibussowitsch     PetscCall(PetscQuadratureDestroy(&affineQuad));
64223e9753d6SMatthew G. Knepley   } else {
64233e9753d6SMatthew G. Knepley     PetscInt f;
64243e9753d6SMatthew G. Knepley     for (f = 0; f < Nf; ++f) {
64259566063dSJacob Faibussowitsch       if (geoms) PetscCall(DMSNESRestoreFEGeom(coordField, cellIS, quads[f], PETSC_FALSE, &geoms[f]));
64269566063dSJacob Faibussowitsch       if (quads) PetscCall(PetscQuadratureDestroy(&quads[f]));
64273e9753d6SMatthew G. Knepley     }
64289566063dSJacob Faibussowitsch     PetscCall(PetscFree2(quads, geoms));
64293e9753d6SMatthew G. Knepley   }
64309566063dSJacob Faibussowitsch   if (dmAux[2]) PetscCall(DMDestroy(&plexA));
64319566063dSJacob Faibussowitsch   PetscCall(DMDestroy(&plex));
64323cc88e6aSStefano Zampini end:
64339566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(DMPLEX_JacobianFEM, dm, 0, 0, 0));
64343ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
64353e9753d6SMatthew G. Knepley }
64368e3a2eefSMatthew G. Knepley 
64378e3a2eefSMatthew G. Knepley /*
64388e3a2eefSMatthew G. Knepley   DMPlexComputeJacobian_Action_Internal - Form the local portion of the Jacobian action Z = J(X) Y at the local solution X using pointwise functions specified by the user.
64398e3a2eefSMatthew G. Knepley 
64408e3a2eefSMatthew G. Knepley   Input Parameters:
64418e3a2eefSMatthew G. Knepley + dm     - The mesh
6442baca6076SPierre Jolivet . key    - The PetscWeakFormKey indicating where integration should happen
644306ad1575SMatthew G. Knepley . cellIS - The cells to integrate over
64448e3a2eefSMatthew G. Knepley . t      - The time
6445145b44c9SPierre Jolivet . X_tShift - The multiplier for the Jacobian with respect to X_t
64468e3a2eefSMatthew G. Knepley . X      - Local solution vector
64478e3a2eefSMatthew G. Knepley . X_t    - Time-derivative of the local solution vector
64488e3a2eefSMatthew G. Knepley . Y      - Local input vector
644906ad1575SMatthew G. Knepley - user   - the user context
64508e3a2eefSMatthew G. Knepley 
64518e3a2eefSMatthew G. Knepley   Output Parameter:
64528e3a2eefSMatthew G. Knepley . Z - Local output vector
64538e3a2eefSMatthew G. Knepley 
64548e3a2eefSMatthew G. Knepley   Note:
64558e3a2eefSMatthew G. Knepley   We form the residual one batch of elements at a time. This allows us to offload work onto an accelerator,
64568e3a2eefSMatthew G. Knepley   like a GPU, or vectorize on a multicore machine.
64578e3a2eefSMatthew G. Knepley */
6458d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeJacobian_Action_Internal(DM dm, PetscFormKey key, IS cellIS, PetscReal t, PetscReal X_tShift, Vec X, Vec X_t, Vec Y, Vec Z, void *user)
6459d71ae5a4SJacob Faibussowitsch {
64608e3a2eefSMatthew G. Knepley   DM_Plex        *mesh  = (DM_Plex *)dm->data;
64618e3a2eefSMatthew G. Knepley   const char     *name  = "Jacobian";
64628e3a2eefSMatthew G. Knepley   DM              dmAux = NULL, plex, plexAux = NULL;
64638e3a2eefSMatthew G. Knepley   DMEnclosureType encAux;
64648e3a2eefSMatthew G. Knepley   Vec             A;
64658e3a2eefSMatthew G. Knepley   DMField         coordField;
64668e3a2eefSMatthew G. Knepley   PetscDS         prob, probAux = NULL;
64678e3a2eefSMatthew G. Knepley   PetscQuadrature quad;
64688e3a2eefSMatthew G. Knepley   PetscSection    section, globalSection, sectionAux;
64698e3a2eefSMatthew G. Knepley   PetscScalar    *elemMat, *elemMatD, *u, *u_t, *a = NULL, *y, *z;
64708e3a2eefSMatthew G. Knepley   const PetscInt *cells;
64718e3a2eefSMatthew G. Knepley   PetscInt        Nf, fieldI, fieldJ;
64728e3a2eefSMatthew G. Knepley   PetscInt        totDim, totDimAux = 0, cStart, cEnd, numCells, c;
64738e3a2eefSMatthew G. Knepley   PetscBool       hasDyn;
64748e3a2eefSMatthew G. Knepley 
64758e3a2eefSMatthew G. Knepley   PetscFunctionBegin;
64769566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(DMPLEX_JacobianFEM, dm, 0, 0, 0));
64779566063dSJacob Faibussowitsch   PetscCall(DMConvert(dm, DMPLEX, &plex));
64789566063dSJacob Faibussowitsch   PetscCall(ISGetLocalSize(cellIS, &numCells));
64799566063dSJacob Faibussowitsch   PetscCall(ISGetPointRange(cellIS, &cStart, &cEnd, &cells));
64809566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dm, &section));
64819566063dSJacob Faibussowitsch   PetscCall(DMGetGlobalSection(dm, &globalSection));
648207218a29SMatthew G. Knepley   PetscCall(DMGetCellDS(dm, cells ? cells[cStart] : cStart, &prob, NULL));
64839566063dSJacob Faibussowitsch   PetscCall(PetscDSGetNumFields(prob, &Nf));
64849566063dSJacob Faibussowitsch   PetscCall(PetscDSGetTotalDimension(prob, &totDim));
64859566063dSJacob Faibussowitsch   PetscCall(PetscDSHasDynamicJacobian(prob, &hasDyn));
64868e3a2eefSMatthew G. Knepley   hasDyn = hasDyn && (X_tShift != 0.0) ? PETSC_TRUE : PETSC_FALSE;
64879566063dSJacob Faibussowitsch   PetscCall(DMGetAuxiliaryVec(dm, key.label, key.value, key.part, &A));
64888e3a2eefSMatthew G. Knepley   if (A) {
64899566063dSJacob Faibussowitsch     PetscCall(VecGetDM(A, &dmAux));
64909566063dSJacob Faibussowitsch     PetscCall(DMGetEnclosureRelation(dmAux, dm, &encAux));
64919566063dSJacob Faibussowitsch     PetscCall(DMConvert(dmAux, DMPLEX, &plexAux));
64929566063dSJacob Faibussowitsch     PetscCall(DMGetLocalSection(plexAux, &sectionAux));
64939566063dSJacob Faibussowitsch     PetscCall(DMGetDS(dmAux, &probAux));
64949566063dSJacob Faibussowitsch     PetscCall(PetscDSGetTotalDimension(probAux, &totDimAux));
64958e3a2eefSMatthew G. Knepley   }
64969566063dSJacob Faibussowitsch   PetscCall(VecSet(Z, 0.0));
649732603206SJames Wright   PetscCall(PetscMalloc6(numCells * totDim, &u, (X_t ? (size_t)numCells * totDim : 0), &u_t, numCells * totDim * totDim, &elemMat, (hasDyn ? (size_t)numCells * totDim * totDim : 0), &elemMatD, numCells * totDim, &y, totDim, &z));
64989566063dSJacob Faibussowitsch   if (dmAux) PetscCall(PetscMalloc1(numCells * totDimAux, &a));
64999566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateField(dm, &coordField));
65008e3a2eefSMatthew G. Knepley   for (c = cStart; c < cEnd; ++c) {
65018e3a2eefSMatthew G. Knepley     const PetscInt cell = cells ? cells[c] : c;
65028e3a2eefSMatthew G. Knepley     const PetscInt cind = c - cStart;
65038e3a2eefSMatthew G. Knepley     PetscScalar   *x = NULL, *x_t = NULL;
65048e3a2eefSMatthew G. Knepley     PetscInt       i;
65058e3a2eefSMatthew G. Knepley 
65069566063dSJacob Faibussowitsch     PetscCall(DMPlexVecGetClosure(plex, section, X, cell, NULL, &x));
65078e3a2eefSMatthew G. Knepley     for (i = 0; i < totDim; ++i) u[cind * totDim + i] = x[i];
65089566063dSJacob Faibussowitsch     PetscCall(DMPlexVecRestoreClosure(plex, section, X, cell, NULL, &x));
65098e3a2eefSMatthew G. Knepley     if (X_t) {
65109566063dSJacob Faibussowitsch       PetscCall(DMPlexVecGetClosure(plex, section, X_t, cell, NULL, &x_t));
65118e3a2eefSMatthew G. Knepley       for (i = 0; i < totDim; ++i) u_t[cind * totDim + i] = x_t[i];
65129566063dSJacob Faibussowitsch       PetscCall(DMPlexVecRestoreClosure(plex, section, X_t, cell, NULL, &x_t));
65138e3a2eefSMatthew G. Knepley     }
65148e3a2eefSMatthew G. Knepley     if (dmAux) {
65158e3a2eefSMatthew G. Knepley       PetscInt subcell;
65169566063dSJacob Faibussowitsch       PetscCall(DMGetEnclosurePoint(dmAux, dm, encAux, cell, &subcell));
65179566063dSJacob Faibussowitsch       PetscCall(DMPlexVecGetClosure(plexAux, sectionAux, A, subcell, NULL, &x));
65188e3a2eefSMatthew G. Knepley       for (i = 0; i < totDimAux; ++i) a[cind * totDimAux + i] = x[i];
65199566063dSJacob Faibussowitsch       PetscCall(DMPlexVecRestoreClosure(plexAux, sectionAux, A, subcell, NULL, &x));
65208e3a2eefSMatthew G. Knepley     }
65219566063dSJacob Faibussowitsch     PetscCall(DMPlexVecGetClosure(plex, section, Y, cell, NULL, &x));
65228e3a2eefSMatthew G. Knepley     for (i = 0; i < totDim; ++i) y[cind * totDim + i] = x[i];
65239566063dSJacob Faibussowitsch     PetscCall(DMPlexVecRestoreClosure(plex, section, Y, cell, NULL, &x));
65248e3a2eefSMatthew G. Knepley   }
65259566063dSJacob Faibussowitsch   PetscCall(PetscArrayzero(elemMat, numCells * totDim * totDim));
65269566063dSJacob Faibussowitsch   if (hasDyn) PetscCall(PetscArrayzero(elemMatD, numCells * totDim * totDim));
65278e3a2eefSMatthew G. Knepley   for (fieldI = 0; fieldI < Nf; ++fieldI) {
65288e3a2eefSMatthew G. Knepley     PetscFE  fe;
65298e3a2eefSMatthew G. Knepley     PetscInt Nb;
65308e3a2eefSMatthew G. Knepley     /* Conforming batches */
65318e3a2eefSMatthew G. Knepley     PetscInt numChunks, numBatches, numBlocks, Ne, blockSize, batchSize;
65328e3a2eefSMatthew G. Knepley     /* Remainder */
65338e3a2eefSMatthew G. Knepley     PetscInt        Nr, offset, Nq;
65348e3a2eefSMatthew G. Knepley     PetscQuadrature qGeom = NULL;
65358e3a2eefSMatthew G. Knepley     PetscInt        maxDegree;
65368e3a2eefSMatthew G. Knepley     PetscFEGeom    *cgeomFEM, *chunkGeom = NULL, *remGeom = NULL;
65378e3a2eefSMatthew G. Knepley 
65389566063dSJacob Faibussowitsch     PetscCall(PetscDSGetDiscretization(prob, fieldI, (PetscObject *)&fe));
65399566063dSJacob Faibussowitsch     PetscCall(PetscFEGetQuadrature(fe, &quad));
65409566063dSJacob Faibussowitsch     PetscCall(PetscFEGetDimension(fe, &Nb));
65419566063dSJacob Faibussowitsch     PetscCall(PetscFEGetTileSizes(fe, NULL, &numBlocks, NULL, &numBatches));
65429566063dSJacob Faibussowitsch     PetscCall(DMFieldGetDegree(coordField, cellIS, NULL, &maxDegree));
65439566063dSJacob Faibussowitsch     if (maxDegree <= 1) PetscCall(DMFieldCreateDefaultQuadrature(coordField, cellIS, &qGeom));
65448e3a2eefSMatthew G. Knepley     if (!qGeom) {
65459566063dSJacob Faibussowitsch       PetscCall(PetscFEGetQuadrature(fe, &qGeom));
65469566063dSJacob Faibussowitsch       PetscCall(PetscObjectReference((PetscObject)qGeom));
65478e3a2eefSMatthew G. Knepley     }
65489566063dSJacob Faibussowitsch     PetscCall(PetscQuadratureGetData(qGeom, NULL, NULL, &Nq, NULL, NULL));
65499566063dSJacob Faibussowitsch     PetscCall(DMSNESGetFEGeom(coordField, cellIS, qGeom, PETSC_FALSE, &cgeomFEM));
65508e3a2eefSMatthew G. Knepley     blockSize = Nb;
65518e3a2eefSMatthew G. Knepley     batchSize = numBlocks * blockSize;
65529566063dSJacob Faibussowitsch     PetscCall(PetscFESetTileSizes(fe, blockSize, numBlocks, batchSize, numBatches));
65538e3a2eefSMatthew G. Knepley     numChunks = numCells / (numBatches * batchSize);
65548e3a2eefSMatthew G. Knepley     Ne        = numChunks * numBatches * batchSize;
65558e3a2eefSMatthew G. Knepley     Nr        = numCells % (numBatches * batchSize);
65568e3a2eefSMatthew G. Knepley     offset    = numCells - Nr;
65579566063dSJacob Faibussowitsch     PetscCall(PetscFEGeomGetChunk(cgeomFEM, 0, offset, &chunkGeom));
65589566063dSJacob Faibussowitsch     PetscCall(PetscFEGeomGetChunk(cgeomFEM, offset, numCells, &remGeom));
65598e3a2eefSMatthew G. Knepley     for (fieldJ = 0; fieldJ < Nf; ++fieldJ) {
65608e3a2eefSMatthew G. Knepley       key.field = fieldI * Nf + fieldJ;
65619566063dSJacob Faibussowitsch       PetscCall(PetscFEIntegrateJacobian(prob, PETSCFE_JACOBIAN, key, Ne, chunkGeom, u, u_t, probAux, a, t, X_tShift, elemMat));
65628e3a54c0SPierre Jolivet       PetscCall(PetscFEIntegrateJacobian(prob, PETSCFE_JACOBIAN, key, Nr, remGeom, &u[offset * totDim], PetscSafePointerPlusOffset(u_t, offset * totDim), probAux, PetscSafePointerPlusOffset(a, offset * totDimAux), t, X_tShift, &elemMat[offset * totDim * totDim]));
65638e3a2eefSMatthew G. Knepley       if (hasDyn) {
65649566063dSJacob Faibussowitsch         PetscCall(PetscFEIntegrateJacobian(prob, PETSCFE_JACOBIAN_DYN, key, Ne, chunkGeom, u, u_t, probAux, a, t, X_tShift, elemMatD));
65658e3a54c0SPierre Jolivet         PetscCall(PetscFEIntegrateJacobian(prob, PETSCFE_JACOBIAN_DYN, key, Nr, remGeom, &u[offset * totDim], PetscSafePointerPlusOffset(u_t, offset * totDim), probAux, &a[offset * totDimAux], t, X_tShift, &elemMatD[offset * totDim * totDim]));
65668e3a2eefSMatthew G. Knepley       }
65678e3a2eefSMatthew G. Knepley     }
65689566063dSJacob Faibussowitsch     PetscCall(PetscFEGeomRestoreChunk(cgeomFEM, offset, numCells, &remGeom));
65699566063dSJacob Faibussowitsch     PetscCall(PetscFEGeomRestoreChunk(cgeomFEM, 0, offset, &chunkGeom));
65709566063dSJacob Faibussowitsch     PetscCall(DMSNESRestoreFEGeom(coordField, cellIS, qGeom, PETSC_FALSE, &cgeomFEM));
65719566063dSJacob Faibussowitsch     PetscCall(PetscQuadratureDestroy(&qGeom));
65728e3a2eefSMatthew G. Knepley   }
65738e3a2eefSMatthew G. Knepley   if (hasDyn) {
65748e3a2eefSMatthew G. Knepley     for (c = 0; c < numCells * totDim * totDim; ++c) elemMat[c] += X_tShift * elemMatD[c];
65758e3a2eefSMatthew G. Knepley   }
65768e3a2eefSMatthew G. Knepley   for (c = cStart; c < cEnd; ++c) {
65778e3a2eefSMatthew G. Knepley     const PetscInt     cell = cells ? cells[c] : c;
65788e3a2eefSMatthew G. Knepley     const PetscInt     cind = c - cStart;
65796497c311SBarry Smith     const PetscBLASInt one  = 1;
65806497c311SBarry Smith     PetscBLASInt       M;
65818e3a2eefSMatthew G. Knepley     const PetscScalar  a = 1.0, b = 0.0;
65828e3a2eefSMatthew G. Knepley 
65836497c311SBarry Smith     PetscCall(PetscBLASIntCast(totDim, &M));
6584792fecdfSBarry Smith     PetscCallBLAS("BLASgemv", BLASgemv_("N", &M, &M, &a, &elemMat[cind * totDim * totDim], &M, &y[cind * totDim], &one, &b, z, &one));
65858e3a2eefSMatthew G. Knepley     if (mesh->printFEM > 1) {
65869566063dSJacob Faibussowitsch       PetscCall(DMPrintCellMatrix(c, name, totDim, totDim, &elemMat[cind * totDim * totDim]));
65879566063dSJacob Faibussowitsch       PetscCall(DMPrintCellVector(c, "Y", totDim, &y[cind * totDim]));
65889566063dSJacob Faibussowitsch       PetscCall(DMPrintCellVector(c, "Z", totDim, z));
65898e3a2eefSMatthew G. Knepley     }
65909566063dSJacob Faibussowitsch     PetscCall(DMPlexVecSetClosure(dm, section, Z, cell, z, ADD_VALUES));
65918e3a2eefSMatthew G. Knepley   }
65929566063dSJacob Faibussowitsch   PetscCall(PetscFree6(u, u_t, elemMat, elemMatD, y, z));
65938e3a2eefSMatthew G. Knepley   if (mesh->printFEM) {
65949566063dSJacob Faibussowitsch     PetscCall(PetscPrintf(PetscObjectComm((PetscObject)Z), "Z:\n"));
65959566063dSJacob Faibussowitsch     PetscCall(VecView(Z, NULL));
65968e3a2eefSMatthew G. Knepley   }
65971059d808SMatthew G. Knepley   PetscCall(ISRestorePointRange(cellIS, &cStart, &cEnd, &cells));
65989566063dSJacob Faibussowitsch   PetscCall(PetscFree(a));
65999566063dSJacob Faibussowitsch   PetscCall(DMDestroy(&plexAux));
66009566063dSJacob Faibussowitsch   PetscCall(DMDestroy(&plex));
66019566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(DMPLEX_JacobianFEM, dm, 0, 0, 0));
66023ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
66038e3a2eefSMatthew G. Knepley }
6604d52c2f21SMatthew G. Knepley 
6605d52c2f21SMatthew G. Knepley static void f0_1(PetscInt dim, PetscInt Nf, PetscInt NfAux, const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[], const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[], PetscReal t, const PetscReal x[], PetscInt numConstants, const PetscScalar constants[], PetscScalar f0[])
6606d52c2f21SMatthew G. Knepley {
6607d52c2f21SMatthew G. Knepley   f0[0] = u[0];
6608d52c2f21SMatthew G. Knepley }
6609d52c2f21SMatthew G. Knepley 
6610d52c2f21SMatthew G. Knepley static void f0_x(PetscInt dim, PetscInt Nf, PetscInt NfAux, const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[], const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[], PetscReal t, const PetscReal x[], PetscInt numConstants, const PetscScalar constants[], PetscScalar f0[])
6611d52c2f21SMatthew G. Knepley {
6612d52c2f21SMatthew G. Knepley   f0[0] = x[(int)PetscRealPart(constants[0])] * u[0];
6613d52c2f21SMatthew G. Knepley }
6614d52c2f21SMatthew G. Knepley 
6615d52c2f21SMatthew G. Knepley static void f0_x2(PetscInt dim, PetscInt Nf, PetscInt NfAux, const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[], const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[], PetscReal t, const PetscReal x[], PetscInt numConstants, const PetscScalar constants[], PetscScalar f0[])
6616d52c2f21SMatthew G. Knepley {
6617d52c2f21SMatthew G. Knepley   PetscInt d;
6618d52c2f21SMatthew G. Knepley 
6619d52c2f21SMatthew G. Knepley   f0[0] = 0.0;
6620d52c2f21SMatthew G. Knepley   for (d = 0; d < dim; ++d) f0[0] += PetscSqr(x[d]) * u[0];
6621d52c2f21SMatthew G. Knepley }
6622d52c2f21SMatthew G. Knepley 
6623d52c2f21SMatthew G. Knepley /*@
6624d52c2f21SMatthew G. Knepley   DMPlexComputeMoments - Compute the first three moments for a field
6625d52c2f21SMatthew G. Knepley 
6626d52c2f21SMatthew G. Knepley   Noncollective
6627d52c2f21SMatthew G. Knepley 
6628d52c2f21SMatthew G. Knepley   Input Parameters:
6629d52c2f21SMatthew G. Knepley + dm - the `DMPLEX`
6630d52c2f21SMatthew G. Knepley - u  - the field
6631d52c2f21SMatthew G. Knepley 
6632d52c2f21SMatthew G. Knepley   Output Parameter:
6633d52c2f21SMatthew G. Knepley . moments - the field moments
6634d52c2f21SMatthew G. Knepley 
6635d52c2f21SMatthew G. Knepley   Level: intermediate
6636d52c2f21SMatthew G. Knepley 
6637d52c2f21SMatthew G. Knepley   Note:
663817314648SMatthew G. Knepley   The `moments` array should be of length cdim + 2, where cdim is the number of components for the coordinate field.
6639d52c2f21SMatthew G. Knepley 
6640d52c2f21SMatthew G. Knepley .seealso: `DM`, `DMPLEX`, `DMSwarmComputeMoments()`
6641d52c2f21SMatthew G. Knepley @*/
6642d52c2f21SMatthew G. Knepley PetscErrorCode DMPlexComputeMoments(DM dm, Vec u, PetscReal moments[])
6643d52c2f21SMatthew G. Knepley {
6644d52c2f21SMatthew G. Knepley   PetscDS            ds;
6645d52c2f21SMatthew G. Knepley   PetscScalar        mom, constants[1];
6646d52c2f21SMatthew G. Knepley   const PetscScalar *oldConstants;
664717314648SMatthew G. Knepley   PetscInt           cdim, Nf, field = 0, Ncon;
6648d52c2f21SMatthew G. Knepley   MPI_Comm           comm;
6649d52c2f21SMatthew G. Knepley   void              *user;
6650d52c2f21SMatthew G. Knepley 
6651d52c2f21SMatthew G. Knepley   PetscFunctionBeginUser;
6652d52c2f21SMatthew G. Knepley   PetscCall(PetscObjectGetComm((PetscObject)dm, &comm));
665317314648SMatthew G. Knepley   PetscCall(DMGetCoordinateDim(dm, &cdim));
6654d52c2f21SMatthew G. Knepley   PetscCall(DMGetApplicationContext(dm, &user));
6655d52c2f21SMatthew G. Knepley   PetscCall(DMGetDS(dm, &ds));
6656d52c2f21SMatthew G. Knepley   PetscCall(PetscDSGetNumFields(ds, &Nf));
6657d52c2f21SMatthew G. Knepley   PetscCall(PetscDSGetConstants(ds, &Ncon, &oldConstants));
6658d52c2f21SMatthew G. Knepley   PetscCheck(Nf == 1, comm, PETSC_ERR_ARG_WRONG, "We currently only support 1 field, not %" PetscInt_FMT, Nf);
6659d52c2f21SMatthew G. Knepley   PetscCall(PetscDSSetObjective(ds, field, &f0_1));
6660d52c2f21SMatthew G. Knepley   PetscCall(DMPlexComputeIntegralFEM(dm, u, &mom, user));
6661d52c2f21SMatthew G. Knepley   moments[0] = PetscRealPart(mom);
666217314648SMatthew G. Knepley   for (PetscInt c = 0; c < cdim; ++c) {
6663d52c2f21SMatthew G. Knepley     constants[0] = c;
666417314648SMatthew G. Knepley     PetscCall(PetscDSSetConstants(ds, 1, constants));
6665d52c2f21SMatthew G. Knepley     PetscCall(PetscDSSetObjective(ds, field, &f0_x));
6666d52c2f21SMatthew G. Knepley     PetscCall(DMPlexComputeIntegralFEM(dm, u, &mom, user));
6667d52c2f21SMatthew G. Knepley     moments[c + 1] = PetscRealPart(mom);
6668d52c2f21SMatthew G. Knepley   }
6669d52c2f21SMatthew G. Knepley   PetscCall(PetscDSSetObjective(ds, field, &f0_x2));
6670d52c2f21SMatthew G. Knepley   PetscCall(DMPlexComputeIntegralFEM(dm, u, &mom, user));
667117314648SMatthew G. Knepley   moments[cdim + 1] = PetscRealPart(mom);
6672d52c2f21SMatthew G. Knepley   PetscCall(PetscDSSetConstants(ds, Ncon, (PetscScalar *)oldConstants));
6673d52c2f21SMatthew G. Knepley   PetscFunctionReturn(PETSC_SUCCESS);
6674d52c2f21SMatthew G. Knepley }
6675