xref: /petsc/src/dm/impls/plex/plexfem.c (revision eae3dc7d82c4e75c6efc83af6cf84b0783a1b49f)
1af0996ceSBarry Smith #include <petsc/private/dmpleximpl.h> /*I      "petscdmplex.h"   I*/
2da97024aSMatthew G. Knepley #include <petscsf.h>
3cb1e1211SMatthew G Knepley 
48e3a2eefSMatthew G. Knepley #include <petscblaslapack.h>
5e8f14785SLisandro Dalcin #include <petsc/private/hashsetij.h>
6af0996ceSBarry Smith #include <petsc/private/petscfeimpl.h>
7af0996ceSBarry Smith #include <petsc/private/petscfvimpl.h>
8a0845e3aSMatthew G. Knepley 
95f0b18bfSMatthew G. Knepley PetscBool  Clementcite       = PETSC_FALSE;
105f0b18bfSMatthew G. Knepley const char ClementCitation[] = "@article{clement1975approximation,\n"
115f0b18bfSMatthew G. Knepley                                "  title   = {Approximation by finite element functions using local regularization},\n"
125f0b18bfSMatthew G. Knepley                                "  author  = {Philippe Cl{\\'e}ment},\n"
135f0b18bfSMatthew G. Knepley                                "  journal = {Revue fran{\\c{c}}aise d'automatique, informatique, recherche op{\\'e}rationnelle. Analyse num{\\'e}rique},\n"
145f0b18bfSMatthew G. Knepley                                "  volume  = {9},\n"
155f0b18bfSMatthew G. Knepley                                "  number  = {R2},\n"
165f0b18bfSMatthew G. Knepley                                "  pages   = {77--84},\n"
175f0b18bfSMatthew G. Knepley                                "  year    = {1975}\n}\n";
185f0b18bfSMatthew G. Knepley 
19d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexConvertPlex(DM dm, DM *plex, PetscBool copy)
20d71ae5a4SJacob Faibussowitsch {
212f856554SMatthew G. Knepley   PetscBool isPlex;
222f856554SMatthew G. Knepley 
232f856554SMatthew G. Knepley   PetscFunctionBegin;
249566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)dm, DMPLEX, &isPlex));
252f856554SMatthew G. Knepley   if (isPlex) {
262f856554SMatthew G. Knepley     *plex = dm;
279566063dSJacob Faibussowitsch     PetscCall(PetscObjectReference((PetscObject)dm));
282f856554SMatthew G. Knepley   } else {
299566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)dm, "dm_plex", (PetscObject *)plex));
302f856554SMatthew G. Knepley     if (!*plex) {
319566063dSJacob Faibussowitsch       PetscCall(DMConvert(dm, DMPLEX, plex));
329566063dSJacob Faibussowitsch       PetscCall(PetscObjectCompose((PetscObject)dm, "dm_plex", (PetscObject)*plex));
332f856554SMatthew G. Knepley       if (copy) {
342f856554SMatthew G. Knepley         DMSubDomainHookLink link;
359a2a23afSMatthew G. Knepley 
369566063dSJacob Faibussowitsch         PetscCall(DMCopyAuxiliaryVec(dm, *plex));
379a2a23afSMatthew G. Knepley         /* Run the subdomain hook (this will copy the DMSNES/DMTS) */
382f856554SMatthew G. Knepley         for (link = dm->subdomainhook; link; link = link->next) {
399566063dSJacob Faibussowitsch           if (link->ddhook) PetscCall((*link->ddhook)(dm, *plex, link->ctx));
402f856554SMatthew G. Knepley         }
412f856554SMatthew G. Knepley       }
422f856554SMatthew G. Knepley     } else {
439566063dSJacob Faibussowitsch       PetscCall(PetscObjectReference((PetscObject)*plex));
442f856554SMatthew G. Knepley     }
452f856554SMatthew G. Knepley   }
463ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
472f856554SMatthew G. Knepley }
482f856554SMatthew G. Knepley 
49d71ae5a4SJacob Faibussowitsch static PetscErrorCode PetscContainerUserDestroy_PetscFEGeom(void *ctx)
50d71ae5a4SJacob Faibussowitsch {
519b6f715bSMatthew G. Knepley   PetscFEGeom *geom = (PetscFEGeom *)ctx;
529b6f715bSMatthew G. Knepley 
539b6f715bSMatthew G. Knepley   PetscFunctionBegin;
549566063dSJacob Faibussowitsch   PetscCall(PetscFEGeomDestroy(&geom));
553ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
569b6f715bSMatthew G. Knepley }
579b6f715bSMatthew G. Knepley 
58d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexGetFEGeom(DMField coordField, IS pointIS, PetscQuadrature quad, PetscBool faceData, PetscFEGeom **geom)
59d71ae5a4SJacob Faibussowitsch {
609b6f715bSMatthew G. Knepley   char           composeStr[33] = {0};
619b6f715bSMatthew G. Knepley   PetscObjectId  id;
629b6f715bSMatthew G. Knepley   PetscContainer container;
639b6f715bSMatthew G. Knepley 
649b6f715bSMatthew G. Knepley   PetscFunctionBegin;
659566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetId((PetscObject)quad, &id));
6663a3b9bcSJacob Faibussowitsch   PetscCall(PetscSNPrintf(composeStr, 32, "DMPlexGetFEGeom_%" PetscInt64_FMT "\n", id));
679566063dSJacob Faibussowitsch   PetscCall(PetscObjectQuery((PetscObject)pointIS, composeStr, (PetscObject *)&container));
689b6f715bSMatthew G. Knepley   if (container) {
699566063dSJacob Faibussowitsch     PetscCall(PetscContainerGetPointer(container, (void **)geom));
709b6f715bSMatthew G. Knepley   } else {
719566063dSJacob Faibussowitsch     PetscCall(DMFieldCreateFEGeom(coordField, pointIS, quad, faceData, geom));
729566063dSJacob Faibussowitsch     PetscCall(PetscContainerCreate(PETSC_COMM_SELF, &container));
739566063dSJacob Faibussowitsch     PetscCall(PetscContainerSetPointer(container, (void *)*geom));
749566063dSJacob Faibussowitsch     PetscCall(PetscContainerSetUserDestroy(container, PetscContainerUserDestroy_PetscFEGeom));
759566063dSJacob Faibussowitsch     PetscCall(PetscObjectCompose((PetscObject)pointIS, composeStr, (PetscObject)container));
769566063dSJacob Faibussowitsch     PetscCall(PetscContainerDestroy(&container));
779b6f715bSMatthew G. Knepley   }
783ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
799b6f715bSMatthew G. Knepley }
809b6f715bSMatthew G. Knepley 
81d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexRestoreFEGeom(DMField coordField, IS pointIS, PetscQuadrature quad, PetscBool faceData, PetscFEGeom **geom)
82d71ae5a4SJacob Faibussowitsch {
839b6f715bSMatthew G. Knepley   PetscFunctionBegin;
849b6f715bSMatthew G. Knepley   *geom = NULL;
853ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
869b6f715bSMatthew G. Knepley }
879b6f715bSMatthew G. Knepley 
8846fa42a0SMatthew G. Knepley /*@
8946fa42a0SMatthew G. Knepley   DMPlexGetScale - Get the scale for the specified fundamental unit
9046fa42a0SMatthew G. Knepley 
9146fa42a0SMatthew G. Knepley   Not collective
9246fa42a0SMatthew G. Knepley 
934165533cSJose E. Roman   Input Parameters:
94a1cb98faSBarry Smith + dm   - the `DM`
9546fa42a0SMatthew G. Knepley - unit - The SI unit
9646fa42a0SMatthew G. Knepley 
974165533cSJose E. Roman   Output Parameter:
9846fa42a0SMatthew G. Knepley . scale - The value used to scale all quantities with this unit
9946fa42a0SMatthew G. Knepley 
10046fa42a0SMatthew G. Knepley   Level: advanced
10146fa42a0SMatthew G. Knepley 
102a1cb98faSBarry Smith .seealso: [](chapter_unstructured), `DM`, `DMPLEX`, `DMPlexSetScale()`, `PetscUnit`
10346fa42a0SMatthew G. Knepley @*/
104d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexGetScale(DM dm, PetscUnit unit, PetscReal *scale)
105d71ae5a4SJacob Faibussowitsch {
106cb1e1211SMatthew G Knepley   DM_Plex *mesh = (DM_Plex *)dm->data;
107cb1e1211SMatthew G Knepley 
108cb1e1211SMatthew G Knepley   PetscFunctionBegin;
109cb1e1211SMatthew G Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
110dadcf809SJacob Faibussowitsch   PetscValidRealPointer(scale, 3);
111cb1e1211SMatthew G Knepley   *scale = mesh->scale[unit];
1123ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
113cb1e1211SMatthew G Knepley }
114cb1e1211SMatthew G Knepley 
11546fa42a0SMatthew G. Knepley /*@
11646fa42a0SMatthew G. Knepley   DMPlexSetScale - Set the scale for the specified fundamental unit
11746fa42a0SMatthew G. Knepley 
11846fa42a0SMatthew G. Knepley   Not collective
11946fa42a0SMatthew G. Knepley 
1204165533cSJose E. Roman   Input Parameters:
121a1cb98faSBarry Smith + dm   - the `DM`
12246fa42a0SMatthew G. Knepley . unit - The SI unit
12346fa42a0SMatthew G. Knepley - scale - The value used to scale all quantities with this unit
12446fa42a0SMatthew G. Knepley 
12546fa42a0SMatthew G. Knepley   Level: advanced
12646fa42a0SMatthew G. Knepley 
127a1cb98faSBarry Smith .seealso: [](chapter_unstructured), `DM`, `DMPLEX`, `DMPlexGetScale()`, `PetscUnit`
12846fa42a0SMatthew G. Knepley @*/
129d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexSetScale(DM dm, PetscUnit unit, PetscReal scale)
130d71ae5a4SJacob Faibussowitsch {
131cb1e1211SMatthew G Knepley   DM_Plex *mesh = (DM_Plex *)dm->data;
132cb1e1211SMatthew G Knepley 
133cb1e1211SMatthew G Knepley   PetscFunctionBegin;
134cb1e1211SMatthew G Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
135cb1e1211SMatthew G Knepley   mesh->scale[unit] = scale;
1363ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
137cb1e1211SMatthew G Knepley }
138cb1e1211SMatthew G Knepley 
139d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexProjectRigidBody_Private(PetscInt dim, PetscReal t, const PetscReal X[], PetscInt Nc, PetscScalar *mode, void *ctx)
140d71ae5a4SJacob Faibussowitsch {
1419371c9d4SSatish Balay   const PetscInt eps[3][3][3] = {
1429371c9d4SSatish Balay     {{0, 0, 0},  {0, 0, 1},  {0, -1, 0}},
1439371c9d4SSatish Balay     {{0, 0, -1}, {0, 0, 0},  {1, 0, 0} },
1449371c9d4SSatish Balay     {{0, 1, 0},  {-1, 0, 0}, {0, 0, 0} }
1459371c9d4SSatish Balay   };
146026175e5SToby Isaac   PetscInt *ctxInt = (PetscInt *)ctx;
147ad917190SMatthew G. Knepley   PetscInt  dim2   = ctxInt[0];
148026175e5SToby Isaac   PetscInt  d      = ctxInt[1];
149026175e5SToby Isaac   PetscInt  i, j, k = dim > 2 ? d - dim : d;
150026175e5SToby Isaac 
151ad917190SMatthew G. Knepley   PetscFunctionBegin;
15263a3b9bcSJacob Faibussowitsch   PetscCheck(dim == dim2, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Input dimension %" PetscInt_FMT " does not match context dimension %" PetscInt_FMT, dim, dim2);
153026175e5SToby Isaac   for (i = 0; i < dim; i++) mode[i] = 0.;
154026175e5SToby Isaac   if (d < dim) {
15512adca46SMatthew G. Knepley     mode[d] = 1.; /* Translation along axis d */
156ad917190SMatthew G. Knepley   } else {
157026175e5SToby Isaac     for (i = 0; i < dim; i++) {
1589371c9d4SSatish Balay       for (j = 0; j < dim; j++) { mode[j] += eps[i][j][k] * X[i]; /* Rotation about axis d */ }
159026175e5SToby Isaac     }
160026175e5SToby Isaac   }
1613ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
162026175e5SToby Isaac }
163026175e5SToby Isaac 
164cc4e42d9SMartin Diehl /*@
16512adca46SMatthew G. Knepley   DMPlexCreateRigidBody - For the default global section, create rigid body modes by function space interpolation
166cb1e1211SMatthew G Knepley 
167d083f849SBarry Smith   Collective on dm
168cb1e1211SMatthew G Knepley 
1694165533cSJose E. Roman   Input Parameters:
170a1cb98faSBarry Smith + dm - the `DM`
17156cf3b9cSMatthew G. Knepley - field - The field number for the rigid body space, or 0 for the default
172cb1e1211SMatthew G Knepley 
1734165533cSJose E. Roman   Output Parameter:
174cb1e1211SMatthew G Knepley . sp - the null space
175cb1e1211SMatthew G Knepley 
176cb1e1211SMatthew G Knepley   Level: advanced
177cb1e1211SMatthew G Knepley 
178a1cb98faSBarry Smith   Note:
179a1cb98faSBarry Smith   This is necessary to provide a suitable coarse space for algebraic multigrid
180a1cb98faSBarry Smith 
181a1cb98faSBarry Smith .seealso: [](chapter_unstructured), `DM`, `DMPLEX`, `MatNullSpaceCreate()`, `PCGAMG`
182cb1e1211SMatthew G Knepley @*/
183d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexCreateRigidBody(DM dm, PetscInt field, MatNullSpace *sp)
184d71ae5a4SJacob Faibussowitsch {
18556cf3b9cSMatthew G. Knepley   PetscErrorCode (**func)(PetscInt, PetscReal, const PetscReal *, PetscInt, PetscScalar *, void *);
186cb1e1211SMatthew G Knepley   MPI_Comm     comm;
187026175e5SToby Isaac   Vec          mode[6];
188026175e5SToby Isaac   PetscSection section, globalSection;
18956cf3b9cSMatthew G. Knepley   PetscInt     dim, dimEmbed, Nf, n, m, mmin, d, i, j;
190db14aad5SMatthew G. Knepley   void       **ctxs;
191cb1e1211SMatthew G Knepley 
192cb1e1211SMatthew G Knepley   PetscFunctionBegin;
1939566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)dm, &comm));
1949566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dm, &dim));
1959566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateDim(dm, &dimEmbed));
1969566063dSJacob Faibussowitsch   PetscCall(DMGetNumFields(dm, &Nf));
19763a3b9bcSJacob Faibussowitsch   PetscCheck(!Nf || !(field < 0 || field >= Nf), comm, PETSC_ERR_ARG_OUTOFRANGE, "Field %" PetscInt_FMT " is not in [0, %" PetscInt_FMT ")", field, Nf);
19856cf3b9cSMatthew G. Knepley   if (dim == 1 && Nf < 2) {
1999566063dSJacob Faibussowitsch     PetscCall(MatNullSpaceCreate(comm, PETSC_TRUE, 0, NULL, sp));
2003ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
201cb1e1211SMatthew G Knepley   }
2029566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dm, &section));
2039566063dSJacob Faibussowitsch   PetscCall(DMGetGlobalSection(dm, &globalSection));
2049566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetConstrainedStorageSize(globalSection, &n));
205db14aad5SMatthew G. Knepley   PetscCall(PetscCalloc2(Nf, &func, Nf, &ctxs));
206b247467aSMatthew G. Knepley   m = (dim * (dim + 1)) / 2;
2079566063dSJacob Faibussowitsch   PetscCall(VecCreate(comm, &mode[0]));
2089566063dSJacob Faibussowitsch   PetscCall(VecSetType(mode[0], dm->vectype));
2099566063dSJacob Faibussowitsch   PetscCall(VecSetSizes(mode[0], n, PETSC_DETERMINE));
2109566063dSJacob Faibussowitsch   PetscCall(VecSetUp(mode[0]));
2119566063dSJacob Faibussowitsch   PetscCall(VecGetSize(mode[0], &n));
212b247467aSMatthew G. Knepley   mmin        = PetscMin(m, n);
21356cf3b9cSMatthew G. Knepley   func[field] = DMPlexProjectRigidBody_Private;
2149566063dSJacob Faibussowitsch   for (i = 1; i < m; ++i) PetscCall(VecDuplicate(mode[0], &mode[i]));
215026175e5SToby Isaac   for (d = 0; d < m; d++) {
216330485fdSToby Isaac     PetscInt ctx[2];
217cb1e1211SMatthew G Knepley 
218db14aad5SMatthew G. Knepley     ctxs[field] = (void *)(&ctx[0]);
2199d8fbdeaSMatthew G. Knepley     ctx[0]      = dimEmbed;
220330485fdSToby Isaac     ctx[1]      = d;
221db14aad5SMatthew G. Knepley     PetscCall(DMProjectFunction(dm, 0.0, func, ctxs, INSERT_VALUES, mode[d]));
222cb1e1211SMatthew G Knepley   }
2233b2202bfSJacob Faibussowitsch   /* Orthonormalize system */
224b50a2c0aSJacob Faibussowitsch   for (i = 0; i < mmin; ++i) {
225b77f2eeeSJacob Faibussowitsch     PetscScalar dots[6];
226b50a2c0aSJacob Faibussowitsch 
2279566063dSJacob Faibussowitsch     PetscCall(VecNormalize(mode[i], NULL));
2289566063dSJacob Faibussowitsch     PetscCall(VecMDot(mode[i], mmin - i - 1, mode + i + 1, dots + i + 1));
229b50a2c0aSJacob Faibussowitsch     for (j = i + 1; j < mmin; ++j) {
230b77f2eeeSJacob Faibussowitsch       dots[j] *= -1.0;
2319566063dSJacob Faibussowitsch       PetscCall(VecAXPY(mode[j], dots[j], mode[i]));
232b50a2c0aSJacob Faibussowitsch     }
233cb1e1211SMatthew G Knepley   }
2349566063dSJacob Faibussowitsch   PetscCall(MatNullSpaceCreate(comm, PETSC_FALSE, mmin, mode, sp));
2359566063dSJacob Faibussowitsch   for (i = 0; i < m; ++i) PetscCall(VecDestroy(&mode[i]));
236db14aad5SMatthew G. Knepley   PetscCall(PetscFree2(func, ctxs));
2373ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
238cb1e1211SMatthew G Knepley }
239cb1e1211SMatthew G Knepley 
240cc4e42d9SMartin Diehl /*@
24112adca46SMatthew G. Knepley   DMPlexCreateRigidBodies - For the default global section, create rigid body modes by function space interpolation
24212adca46SMatthew G. Knepley 
243d083f849SBarry Smith   Collective on dm
24412adca46SMatthew G. Knepley 
2454165533cSJose E. Roman   Input Parameters:
246a1cb98faSBarry Smith + dm    - the `DM`
24712adca46SMatthew G. Knepley . nb    - The number of bodies
248a1cb98faSBarry Smith . label - The `DMLabel` marking each domain
24912adca46SMatthew G. Knepley . nids  - The number of ids per body
25012adca46SMatthew G. Knepley - ids   - An array of the label ids in sequence for each domain
25112adca46SMatthew G. Knepley 
2524165533cSJose E. Roman   Output Parameter:
25312adca46SMatthew G. Knepley . sp - the null space
25412adca46SMatthew G. Knepley 
25512adca46SMatthew G. Knepley   Level: advanced
25612adca46SMatthew G. Knepley 
257a1cb98faSBarry Smith   Note:
258a1cb98faSBarry Smith   This is necessary to provide a suitable coarse space for algebraic multigrid
259a1cb98faSBarry Smith 
260a1cb98faSBarry Smith .seealso: [](chapter_unstructured), `DM`, `DMPLEX`, `MatNullSpaceCreate()`
26112adca46SMatthew G. Knepley @*/
262d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexCreateRigidBodies(DM dm, PetscInt nb, DMLabel label, const PetscInt nids[], const PetscInt ids[], MatNullSpace *sp)
263d71ae5a4SJacob Faibussowitsch {
26412adca46SMatthew G. Knepley   MPI_Comm     comm;
26512adca46SMatthew G. Knepley   PetscSection section, globalSection;
26612adca46SMatthew G. Knepley   Vec         *mode;
26712adca46SMatthew G. Knepley   PetscScalar *dots;
26812adca46SMatthew G. Knepley   PetscInt     dim, dimEmbed, n, m, b, d, i, j, off;
26912adca46SMatthew G. Knepley 
27012adca46SMatthew G. Knepley   PetscFunctionBegin;
2719566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)dm, &comm));
2729566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dm, &dim));
2739566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateDim(dm, &dimEmbed));
2749566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dm, &section));
2759566063dSJacob Faibussowitsch   PetscCall(DMGetGlobalSection(dm, &globalSection));
2769566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetConstrainedStorageSize(globalSection, &n));
27712adca46SMatthew G. Knepley   m = nb * (dim * (dim + 1)) / 2;
2789566063dSJacob Faibussowitsch   PetscCall(PetscMalloc2(m, &mode, m, &dots));
2799566063dSJacob Faibussowitsch   PetscCall(VecCreate(comm, &mode[0]));
2809566063dSJacob Faibussowitsch   PetscCall(VecSetSizes(mode[0], n, PETSC_DETERMINE));
2819566063dSJacob Faibussowitsch   PetscCall(VecSetUp(mode[0]));
2829566063dSJacob Faibussowitsch   for (i = 1; i < m; ++i) PetscCall(VecDuplicate(mode[0], &mode[i]));
28312adca46SMatthew G. Knepley   for (b = 0, off = 0; b < nb; ++b) {
28412adca46SMatthew G. Knepley     for (d = 0; d < m / nb; ++d) {
28512adca46SMatthew G. Knepley       PetscInt ctx[2];
28612adca46SMatthew G. Knepley       PetscErrorCode (*func)(PetscInt, PetscReal, const PetscReal *, PetscInt, PetscScalar *, void *) = DMPlexProjectRigidBody_Private;
28712adca46SMatthew G. Knepley       void *voidctx                                                                                   = (void *)(&ctx[0]);
28812adca46SMatthew G. Knepley 
28912adca46SMatthew G. Knepley       ctx[0] = dimEmbed;
29012adca46SMatthew G. Knepley       ctx[1] = d;
2919566063dSJacob Faibussowitsch       PetscCall(DMProjectFunctionLabel(dm, 0.0, label, nids[b], &ids[off], 0, NULL, &func, &voidctx, INSERT_VALUES, mode[d]));
29212adca46SMatthew G. Knepley       off += nids[b];
29312adca46SMatthew G. Knepley     }
29412adca46SMatthew G. Knepley   }
2953b2202bfSJacob Faibussowitsch   /* Orthonormalize system */
296606c1a1cSJacob Faibussowitsch   for (i = 0; i < m; ++i) {
297b77f2eeeSJacob Faibussowitsch     PetscScalar dots[6];
2985a0e29b9SJacob Faibussowitsch 
2999566063dSJacob Faibussowitsch     PetscCall(VecNormalize(mode[i], NULL));
3009566063dSJacob Faibussowitsch     PetscCall(VecMDot(mode[i], m - i - 1, mode + i + 1, dots + i + 1));
3015a0e29b9SJacob Faibussowitsch     for (j = i + 1; j < m; ++j) {
302b77f2eeeSJacob Faibussowitsch       dots[j] *= -1.0;
3039566063dSJacob Faibussowitsch       PetscCall(VecAXPY(mode[j], dots[j], mode[i]));
3045a0e29b9SJacob Faibussowitsch     }
30512adca46SMatthew G. Knepley   }
3069566063dSJacob Faibussowitsch   PetscCall(MatNullSpaceCreate(comm, PETSC_FALSE, m, mode, sp));
3079566063dSJacob Faibussowitsch   for (i = 0; i < m; ++i) PetscCall(VecDestroy(&mode[i]));
3089566063dSJacob Faibussowitsch   PetscCall(PetscFree2(mode, dots));
3093ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
31012adca46SMatthew G. Knepley }
31112adca46SMatthew G. Knepley 
312b29cfa1cSToby Isaac /*@
313b29cfa1cSToby Isaac   DMPlexSetMaxProjectionHeight - In DMPlexProjectXXXLocal() functions, the projected values of a basis function's dofs
314b29cfa1cSToby Isaac   are computed by associating the basis function with one of the mesh points in its transitively-closed support, and
315b29cfa1cSToby Isaac   evaluating the dual space basis of that point.  A basis function is associated with the point in its
316b29cfa1cSToby Isaac   transitively-closed support whose mesh height is highest (w.r.t. DAG height), but not greater than the maximum
317b29cfa1cSToby Isaac   projection height, which is set with this function.  By default, the maximum projection height is zero, which means
318b29cfa1cSToby Isaac   that only mesh cells are used to project basis functions.  A height of one, for example, evaluates a cell-interior
319b29cfa1cSToby Isaac   basis functions using its cells dual space basis, but all other basis functions with the dual space basis of a face.
320b29cfa1cSToby Isaac 
321b29cfa1cSToby Isaac   Input Parameters:
322a1cb98faSBarry Smith + dm - the `DMPLEX` object
323b29cfa1cSToby Isaac - height - the maximum projection height >= 0
324b29cfa1cSToby Isaac 
325b29cfa1cSToby Isaac   Level: advanced
326b29cfa1cSToby Isaac 
327a1cb98faSBarry Smith .seealso: [](chapter_unstructured), `DM`, `DMPLEX`, `DMPlexGetMaxProjectionHeight()`, `DMProjectFunctionLocal()`, `DMProjectFunctionLabelLocal()`
328b29cfa1cSToby Isaac @*/
329d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexSetMaxProjectionHeight(DM dm, PetscInt height)
330d71ae5a4SJacob Faibussowitsch {
331b29cfa1cSToby Isaac   DM_Plex *plex = (DM_Plex *)dm->data;
332b29cfa1cSToby Isaac 
333b29cfa1cSToby Isaac   PetscFunctionBegin;
334b29cfa1cSToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
335b29cfa1cSToby Isaac   plex->maxProjectionHeight = height;
3363ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
337b29cfa1cSToby Isaac }
338b29cfa1cSToby Isaac 
339b29cfa1cSToby Isaac /*@
340b29cfa1cSToby Isaac   DMPlexGetMaxProjectionHeight - Get the maximum height (w.r.t. DAG) of mesh points used to evaluate dual bases in
341b29cfa1cSToby Isaac   DMPlexProjectXXXLocal() functions.
342b29cfa1cSToby Isaac 
343b29cfa1cSToby Isaac   Input Parameters:
344a1cb98faSBarry Smith . dm - the `DMPLEX` object
345b29cfa1cSToby Isaac 
346b29cfa1cSToby Isaac   Output Parameters:
347b29cfa1cSToby Isaac . height - the maximum projection height
348b29cfa1cSToby Isaac 
349b29cfa1cSToby Isaac   Level: intermediate
350b29cfa1cSToby Isaac 
351a1cb98faSBarry Smith .seealso: [](chapter_unstructured), `DM`, `DMPLEX`, `DMPlexSetMaxProjectionHeight()`, `DMProjectFunctionLocal()`, `DMProjectFunctionLabelLocal()`
352b29cfa1cSToby Isaac @*/
353d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexGetMaxProjectionHeight(DM dm, PetscInt *height)
354d71ae5a4SJacob Faibussowitsch {
355b29cfa1cSToby Isaac   DM_Plex *plex = (DM_Plex *)dm->data;
356b29cfa1cSToby Isaac 
357b29cfa1cSToby Isaac   PetscFunctionBegin;
358b29cfa1cSToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
359b29cfa1cSToby Isaac   *height = plex->maxProjectionHeight;
3603ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
361b29cfa1cSToby Isaac }
362b29cfa1cSToby Isaac 
363ca3d3a14SMatthew G. Knepley typedef struct {
364ca3d3a14SMatthew G. Knepley   PetscReal    alpha; /* The first Euler angle, and in 2D the only one */
365ca3d3a14SMatthew G. Knepley   PetscReal    beta;  /* The second Euler angle */
366ca3d3a14SMatthew G. Knepley   PetscReal    gamma; /* The third Euler angle */
367ca3d3a14SMatthew G. Knepley   PetscInt     dim;   /* The dimension of R */
368ca3d3a14SMatthew G. Knepley   PetscScalar *R;     /* The rotation matrix, transforming a vector in the local basis to the global basis */
369ca3d3a14SMatthew G. Knepley   PetscScalar *RT;    /* The transposed rotation matrix, transforming a vector in the global basis to the local basis */
370ca3d3a14SMatthew G. Knepley } RotCtx;
371ca3d3a14SMatthew G. Knepley 
372ca3d3a14SMatthew G. Knepley /*
373ca3d3a14SMatthew G. Knepley   Note: Following https://en.wikipedia.org/wiki/Euler_angles, we will specify Euler angles by extrinsic rotations, meaning that
374ca3d3a14SMatthew G. Knepley   we rotate with respect to a fixed initial coordinate system, the local basis (x-y-z). The global basis (X-Y-Z) is reached as follows:
375ca3d3a14SMatthew G. Knepley   $ The XYZ system rotates about the z axis by alpha. The X axis is now at angle alpha with respect to the x axis.
376ca3d3a14SMatthew G. Knepley   $ The XYZ system rotates again about the x axis by beta. The Z axis is now at angle beta with respect to the z axis.
377ca3d3a14SMatthew G. Knepley   $ The XYZ system rotates a third time about the z axis by gamma.
378ca3d3a14SMatthew G. Knepley */
379d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexBasisTransformSetUp_Rotation_Internal(DM dm, void *ctx)
380d71ae5a4SJacob Faibussowitsch {
381ca3d3a14SMatthew G. Knepley   RotCtx   *rc  = (RotCtx *)ctx;
382ca3d3a14SMatthew G. Knepley   PetscInt  dim = rc->dim;
383ca3d3a14SMatthew G. Knepley   PetscReal c1, s1, c2, s2, c3, s3;
384ca3d3a14SMatthew G. Knepley 
385ca3d3a14SMatthew G. Knepley   PetscFunctionBegin;
3869566063dSJacob Faibussowitsch   PetscCall(PetscMalloc2(PetscSqr(dim), &rc->R, PetscSqr(dim), &rc->RT));
387ca3d3a14SMatthew G. Knepley   switch (dim) {
388ca3d3a14SMatthew G. Knepley   case 2:
3899371c9d4SSatish Balay     c1       = PetscCosReal(rc->alpha);
3909371c9d4SSatish Balay     s1       = PetscSinReal(rc->alpha);
3919371c9d4SSatish Balay     rc->R[0] = c1;
3929371c9d4SSatish Balay     rc->R[1] = s1;
3939371c9d4SSatish Balay     rc->R[2] = -s1;
3949371c9d4SSatish Balay     rc->R[3] = c1;
3959566063dSJacob Faibussowitsch     PetscCall(PetscArraycpy(rc->RT, rc->R, PetscSqr(dim)));
396b458e8f1SJose E. Roman     DMPlex_Transpose2D_Internal(rc->RT);
397ca3d3a14SMatthew G. Knepley     break;
398ca3d3a14SMatthew G. Knepley   case 3:
3999371c9d4SSatish Balay     c1       = PetscCosReal(rc->alpha);
4009371c9d4SSatish Balay     s1       = PetscSinReal(rc->alpha);
4019371c9d4SSatish Balay     c2       = PetscCosReal(rc->beta);
4029371c9d4SSatish Balay     s2       = PetscSinReal(rc->beta);
4039371c9d4SSatish Balay     c3       = PetscCosReal(rc->gamma);
4049371c9d4SSatish Balay     s3       = PetscSinReal(rc->gamma);
4059371c9d4SSatish Balay     rc->R[0] = c1 * c3 - c2 * s1 * s3;
4069371c9d4SSatish Balay     rc->R[1] = c3 * s1 + c1 * c2 * s3;
4079371c9d4SSatish Balay     rc->R[2] = s2 * s3;
4089371c9d4SSatish Balay     rc->R[3] = -c1 * s3 - c2 * c3 * s1;
4099371c9d4SSatish Balay     rc->R[4] = c1 * c2 * c3 - s1 * s3;
4109371c9d4SSatish Balay     rc->R[5] = c3 * s2;
4119371c9d4SSatish Balay     rc->R[6] = s1 * s2;
4129371c9d4SSatish Balay     rc->R[7] = -c1 * s2;
4139371c9d4SSatish Balay     rc->R[8] = c2;
4149566063dSJacob Faibussowitsch     PetscCall(PetscArraycpy(rc->RT, rc->R, PetscSqr(dim)));
415b458e8f1SJose E. Roman     DMPlex_Transpose3D_Internal(rc->RT);
416ca3d3a14SMatthew G. Knepley     break;
417d71ae5a4SJacob Faibussowitsch   default:
418d71ae5a4SJacob Faibussowitsch     SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Dimension %" PetscInt_FMT " not supported", dim);
419ca3d3a14SMatthew G. Knepley   }
4203ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
421ca3d3a14SMatthew G. Knepley }
422ca3d3a14SMatthew G. Knepley 
423d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexBasisTransformDestroy_Rotation_Internal(DM dm, void *ctx)
424d71ae5a4SJacob Faibussowitsch {
425ca3d3a14SMatthew G. Knepley   RotCtx *rc = (RotCtx *)ctx;
426ca3d3a14SMatthew G. Knepley 
427ca3d3a14SMatthew G. Knepley   PetscFunctionBegin;
4289566063dSJacob Faibussowitsch   PetscCall(PetscFree2(rc->R, rc->RT));
4299566063dSJacob Faibussowitsch   PetscCall(PetscFree(rc));
4303ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
431ca3d3a14SMatthew G. Knepley }
432ca3d3a14SMatthew G. Knepley 
433d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexBasisTransformGetMatrix_Rotation_Internal(DM dm, const PetscReal x[], PetscBool l2g, const PetscScalar **A, void *ctx)
434d71ae5a4SJacob Faibussowitsch {
435ca3d3a14SMatthew G. Knepley   RotCtx *rc = (RotCtx *)ctx;
436ca3d3a14SMatthew G. Knepley 
437ca3d3a14SMatthew G. Knepley   PetscFunctionBeginHot;
438ca3d3a14SMatthew G. Knepley   PetscValidPointer(ctx, 5);
4399371c9d4SSatish Balay   if (l2g) {
4409371c9d4SSatish Balay     *A = rc->R;
4419371c9d4SSatish Balay   } else {
4429371c9d4SSatish Balay     *A = rc->RT;
4439371c9d4SSatish Balay   }
4443ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
445ca3d3a14SMatthew G. Knepley }
446ca3d3a14SMatthew G. Knepley 
447d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexBasisTransformApplyReal_Internal(DM dm, const PetscReal x[], PetscBool l2g, PetscInt dim, const PetscReal *y, PetscReal *z, void *ctx)
448d71ae5a4SJacob Faibussowitsch {
449ec277c0fSMatthew G. Knepley   PetscFunctionBegin;
450ab6a9622SMatthew G. Knepley #if defined(PETSC_USE_COMPLEX)
451ab6a9622SMatthew G. Knepley   switch (dim) {
4529371c9d4SSatish Balay   case 2: {
45327104ee2SJacob Faibussowitsch     PetscScalar yt[2] = {y[0], y[1]}, zt[2] = {0.0, 0.0};
454ab6a9622SMatthew G. Knepley 
4559566063dSJacob Faibussowitsch     PetscCall(DMPlexBasisTransformApply_Internal(dm, x, l2g, dim, yt, zt, ctx));
4569371c9d4SSatish Balay     z[0] = PetscRealPart(zt[0]);
4579371c9d4SSatish Balay     z[1] = PetscRealPart(zt[1]);
4589371c9d4SSatish Balay   } break;
4599371c9d4SSatish Balay   case 3: {
46027104ee2SJacob Faibussowitsch     PetscScalar yt[3] = {y[0], y[1], y[2]}, zt[3] = {0.0, 0.0, 0.0};
461ab6a9622SMatthew G. Knepley 
4629566063dSJacob Faibussowitsch     PetscCall(DMPlexBasisTransformApply_Internal(dm, x, l2g, dim, yt, zt, ctx));
4639371c9d4SSatish Balay     z[0] = PetscRealPart(zt[0]);
4649371c9d4SSatish Balay     z[1] = PetscRealPart(zt[1]);
4659371c9d4SSatish Balay     z[2] = PetscRealPart(zt[2]);
4669371c9d4SSatish Balay   } break;
467ab6a9622SMatthew G. Knepley   }
468ab6a9622SMatthew G. Knepley #else
4699566063dSJacob Faibussowitsch   PetscCall(DMPlexBasisTransformApply_Internal(dm, x, l2g, dim, y, z, ctx));
470ab6a9622SMatthew G. Knepley #endif
4713ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
472ab6a9622SMatthew G. Knepley }
473ab6a9622SMatthew G. Knepley 
474d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexBasisTransformApply_Internal(DM dm, const PetscReal x[], PetscBool l2g, PetscInt dim, const PetscScalar *y, PetscScalar *z, void *ctx)
475d71ae5a4SJacob Faibussowitsch {
476ca3d3a14SMatthew G. Knepley   const PetscScalar *A;
477ca3d3a14SMatthew G. Knepley 
478ca3d3a14SMatthew G. Knepley   PetscFunctionBeginHot;
4799566063dSJacob Faibussowitsch   PetscCall((*dm->transformGetMatrix)(dm, x, l2g, &A, ctx));
480ca3d3a14SMatthew G. Knepley   switch (dim) {
481d71ae5a4SJacob Faibussowitsch   case 2:
482d71ae5a4SJacob Faibussowitsch     DMPlex_Mult2D_Internal(A, 1, y, z);
483d71ae5a4SJacob Faibussowitsch     break;
484d71ae5a4SJacob Faibussowitsch   case 3:
485d71ae5a4SJacob Faibussowitsch     DMPlex_Mult3D_Internal(A, 1, y, z);
486d71ae5a4SJacob Faibussowitsch     break;
487ca3d3a14SMatthew G. Knepley   }
4883ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
489ca3d3a14SMatthew G. Knepley }
490ca3d3a14SMatthew G. Knepley 
491d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexBasisTransformField_Internal(DM dm, DM tdm, Vec tv, PetscInt p, PetscInt f, PetscBool l2g, PetscScalar *a)
492d71ae5a4SJacob Faibussowitsch {
493ca3d3a14SMatthew G. Knepley   PetscSection       ts;
494ca3d3a14SMatthew G. Knepley   const PetscScalar *ta, *tva;
495ca3d3a14SMatthew G. Knepley   PetscInt           dof;
496ca3d3a14SMatthew G. Knepley 
497ca3d3a14SMatthew G. Knepley   PetscFunctionBeginHot;
4989566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(tdm, &ts));
4999566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetFieldDof(ts, p, f, &dof));
5009566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(tv, &ta));
5019566063dSJacob Faibussowitsch   PetscCall(DMPlexPointLocalFieldRead(tdm, p, f, ta, &tva));
502ca3d3a14SMatthew G. Knepley   if (l2g) {
503ca3d3a14SMatthew G. Knepley     switch (dof) {
504d71ae5a4SJacob Faibussowitsch     case 4:
505d71ae5a4SJacob Faibussowitsch       DMPlex_Mult2D_Internal(tva, 1, a, a);
506d71ae5a4SJacob Faibussowitsch       break;
507d71ae5a4SJacob Faibussowitsch     case 9:
508d71ae5a4SJacob Faibussowitsch       DMPlex_Mult3D_Internal(tva, 1, a, a);
509d71ae5a4SJacob Faibussowitsch       break;
510ca3d3a14SMatthew G. Knepley     }
511ca3d3a14SMatthew G. Knepley   } else {
512ca3d3a14SMatthew G. Knepley     switch (dof) {
513d71ae5a4SJacob Faibussowitsch     case 4:
514d71ae5a4SJacob Faibussowitsch       DMPlex_MultTranspose2D_Internal(tva, 1, a, a);
515d71ae5a4SJacob Faibussowitsch       break;
516d71ae5a4SJacob Faibussowitsch     case 9:
517d71ae5a4SJacob Faibussowitsch       DMPlex_MultTranspose3D_Internal(tva, 1, a, a);
518d71ae5a4SJacob Faibussowitsch       break;
519ca3d3a14SMatthew G. Knepley     }
520ca3d3a14SMatthew G. Knepley   }
5219566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(tv, &ta));
5223ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
523ca3d3a14SMatthew G. Knepley }
524ca3d3a14SMatthew G. Knepley 
525d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexBasisTransformFieldTensor_Internal(DM dm, DM tdm, Vec tv, PetscInt pf, PetscInt f, PetscInt pg, PetscInt g, PetscBool l2g, PetscInt lda, PetscScalar *a)
526d71ae5a4SJacob Faibussowitsch {
527ca3d3a14SMatthew G. Knepley   PetscSection       s, ts;
528ca3d3a14SMatthew G. Knepley   const PetscScalar *ta, *tvaf, *tvag;
529ca3d3a14SMatthew G. Knepley   PetscInt           fdof, gdof, fpdof, gpdof;
530ca3d3a14SMatthew G. Knepley 
531ca3d3a14SMatthew G. Knepley   PetscFunctionBeginHot;
5329566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dm, &s));
5339566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(tdm, &ts));
5349566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetFieldDof(s, pf, f, &fpdof));
5359566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetFieldDof(s, pg, g, &gpdof));
5369566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetFieldDof(ts, pf, f, &fdof));
5379566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetFieldDof(ts, pg, g, &gdof));
5389566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(tv, &ta));
5399566063dSJacob Faibussowitsch   PetscCall(DMPlexPointLocalFieldRead(tdm, pf, f, ta, &tvaf));
5409566063dSJacob Faibussowitsch   PetscCall(DMPlexPointLocalFieldRead(tdm, pg, g, ta, &tvag));
541ca3d3a14SMatthew G. Knepley   if (l2g) {
542ca3d3a14SMatthew G. Knepley     switch (fdof) {
543d71ae5a4SJacob Faibussowitsch     case 4:
544d71ae5a4SJacob Faibussowitsch       DMPlex_MatMult2D_Internal(tvaf, gpdof, lda, a, a);
545d71ae5a4SJacob Faibussowitsch       break;
546d71ae5a4SJacob Faibussowitsch     case 9:
547d71ae5a4SJacob Faibussowitsch       DMPlex_MatMult3D_Internal(tvaf, gpdof, lda, a, a);
548d71ae5a4SJacob Faibussowitsch       break;
549ca3d3a14SMatthew G. Knepley     }
550ca3d3a14SMatthew G. Knepley     switch (gdof) {
551d71ae5a4SJacob Faibussowitsch     case 4:
552d71ae5a4SJacob Faibussowitsch       DMPlex_MatMultTransposeLeft2D_Internal(tvag, fpdof, lda, a, a);
553d71ae5a4SJacob Faibussowitsch       break;
554d71ae5a4SJacob Faibussowitsch     case 9:
555d71ae5a4SJacob Faibussowitsch       DMPlex_MatMultTransposeLeft3D_Internal(tvag, fpdof, lda, a, a);
556d71ae5a4SJacob Faibussowitsch       break;
557ca3d3a14SMatthew G. Knepley     }
558ca3d3a14SMatthew G. Knepley   } else {
559ca3d3a14SMatthew G. Knepley     switch (fdof) {
560d71ae5a4SJacob Faibussowitsch     case 4:
561d71ae5a4SJacob Faibussowitsch       DMPlex_MatMultTranspose2D_Internal(tvaf, gpdof, lda, a, a);
562d71ae5a4SJacob Faibussowitsch       break;
563d71ae5a4SJacob Faibussowitsch     case 9:
564d71ae5a4SJacob Faibussowitsch       DMPlex_MatMultTranspose3D_Internal(tvaf, gpdof, lda, a, a);
565d71ae5a4SJacob Faibussowitsch       break;
566ca3d3a14SMatthew G. Knepley     }
567ca3d3a14SMatthew G. Knepley     switch (gdof) {
568d71ae5a4SJacob Faibussowitsch     case 4:
569d71ae5a4SJacob Faibussowitsch       DMPlex_MatMultLeft2D_Internal(tvag, fpdof, lda, a, a);
570d71ae5a4SJacob Faibussowitsch       break;
571d71ae5a4SJacob Faibussowitsch     case 9:
572d71ae5a4SJacob Faibussowitsch       DMPlex_MatMultLeft3D_Internal(tvag, fpdof, lda, a, a);
573d71ae5a4SJacob Faibussowitsch       break;
574ca3d3a14SMatthew G. Knepley     }
575ca3d3a14SMatthew G. Knepley   }
5769566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(tv, &ta));
5773ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
578ca3d3a14SMatthew G. Knepley }
579ca3d3a14SMatthew G. Knepley 
580d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexBasisTransformPoint_Internal(DM dm, DM tdm, Vec tv, PetscInt p, PetscBool fieldActive[], PetscBool l2g, PetscScalar *a)
581d71ae5a4SJacob Faibussowitsch {
582ca3d3a14SMatthew G. Knepley   PetscSection    s;
583ca3d3a14SMatthew G. Knepley   PetscSection    clSection;
584ca3d3a14SMatthew G. Knepley   IS              clPoints;
585ca3d3a14SMatthew G. Knepley   const PetscInt *clp;
586ca3d3a14SMatthew G. Knepley   PetscInt       *points = NULL;
587ca3d3a14SMatthew G. Knepley   PetscInt        Nf, f, Np, cp, dof, d = 0;
588ca3d3a14SMatthew G. Knepley 
589ca3d3a14SMatthew G. Knepley   PetscFunctionBegin;
5909566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dm, &s));
5919566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetNumFields(s, &Nf));
5929566063dSJacob Faibussowitsch   PetscCall(DMPlexGetCompressedClosure(dm, s, p, &Np, &points, &clSection, &clPoints, &clp));
593ca3d3a14SMatthew G. Knepley   for (f = 0; f < Nf; ++f) {
594ca3d3a14SMatthew G. Knepley     for (cp = 0; cp < Np * 2; cp += 2) {
5959566063dSJacob Faibussowitsch       PetscCall(PetscSectionGetFieldDof(s, points[cp], f, &dof));
596ca3d3a14SMatthew G. Knepley       if (!dof) continue;
5979566063dSJacob Faibussowitsch       if (fieldActive[f]) PetscCall(DMPlexBasisTransformField_Internal(dm, tdm, tv, points[cp], f, l2g, &a[d]));
598ca3d3a14SMatthew G. Knepley       d += dof;
599ca3d3a14SMatthew G. Knepley     }
600ca3d3a14SMatthew G. Knepley   }
6019566063dSJacob Faibussowitsch   PetscCall(DMPlexRestoreCompressedClosure(dm, s, p, &Np, &points, &clSection, &clPoints, &clp));
6023ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
603ca3d3a14SMatthew G. Knepley }
604ca3d3a14SMatthew G. Knepley 
605d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexBasisTransformPointTensor_Internal(DM dm, DM tdm, Vec tv, PetscInt p, PetscBool l2g, PetscInt lda, PetscScalar *a)
606d71ae5a4SJacob Faibussowitsch {
607ca3d3a14SMatthew G. Knepley   PetscSection    s;
608ca3d3a14SMatthew G. Knepley   PetscSection    clSection;
609ca3d3a14SMatthew G. Knepley   IS              clPoints;
610ca3d3a14SMatthew G. Knepley   const PetscInt *clp;
611ca3d3a14SMatthew G. Knepley   PetscInt       *points = NULL;
6128bdb3c71SMatthew G. Knepley   PetscInt        Nf, f, g, Np, cpf, cpg, fdof, gdof, r, c = 0;
613ca3d3a14SMatthew G. Knepley 
614ca3d3a14SMatthew G. Knepley   PetscFunctionBegin;
6159566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dm, &s));
6169566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetNumFields(s, &Nf));
6179566063dSJacob Faibussowitsch   PetscCall(DMPlexGetCompressedClosure(dm, s, p, &Np, &points, &clSection, &clPoints, &clp));
618ca3d3a14SMatthew G. Knepley   for (f = 0, r = 0; f < Nf; ++f) {
619ca3d3a14SMatthew G. Knepley     for (cpf = 0; cpf < Np * 2; cpf += 2) {
6209566063dSJacob Faibussowitsch       PetscCall(PetscSectionGetFieldDof(s, points[cpf], f, &fdof));
621ca3d3a14SMatthew G. Knepley       for (g = 0, c = 0; g < Nf; ++g) {
622ca3d3a14SMatthew G. Knepley         for (cpg = 0; cpg < Np * 2; cpg += 2) {
6239566063dSJacob Faibussowitsch           PetscCall(PetscSectionGetFieldDof(s, points[cpg], g, &gdof));
6249566063dSJacob Faibussowitsch           PetscCall(DMPlexBasisTransformFieldTensor_Internal(dm, tdm, tv, points[cpf], f, points[cpg], g, l2g, lda, &a[r * lda + c]));
625ca3d3a14SMatthew G. Knepley           c += gdof;
626ca3d3a14SMatthew G. Knepley         }
627ca3d3a14SMatthew G. Knepley       }
62863a3b9bcSJacob Faibussowitsch       PetscCheck(c == lda, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid number of columns %" PetscInt_FMT " should be %" PetscInt_FMT, c, lda);
629ca3d3a14SMatthew G. Knepley       r += fdof;
630ca3d3a14SMatthew G. Knepley     }
631ca3d3a14SMatthew G. Knepley   }
63263a3b9bcSJacob Faibussowitsch   PetscCheck(r == lda, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid number of rows %" PetscInt_FMT " should be %" PetscInt_FMT, c, lda);
6339566063dSJacob Faibussowitsch   PetscCall(DMPlexRestoreCompressedClosure(dm, s, p, &Np, &points, &clSection, &clPoints, &clp));
6343ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
635ca3d3a14SMatthew G. Knepley }
636ca3d3a14SMatthew G. Knepley 
637d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexBasisTransform_Internal(DM dm, Vec lv, PetscBool l2g)
638d71ae5a4SJacob Faibussowitsch {
639ca3d3a14SMatthew G. Knepley   DM                 tdm;
640ca3d3a14SMatthew G. Knepley   Vec                tv;
641ca3d3a14SMatthew G. Knepley   PetscSection       ts, s;
642ca3d3a14SMatthew G. Knepley   const PetscScalar *ta;
643ca3d3a14SMatthew G. Knepley   PetscScalar       *a, *va;
644ca3d3a14SMatthew G. Knepley   PetscInt           pStart, pEnd, p, Nf, f;
645ca3d3a14SMatthew G. Knepley 
646ca3d3a14SMatthew G. Knepley   PetscFunctionBegin;
6479566063dSJacob Faibussowitsch   PetscCall(DMGetBasisTransformDM_Internal(dm, &tdm));
6489566063dSJacob Faibussowitsch   PetscCall(DMGetBasisTransformVec_Internal(dm, &tv));
6499566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(tdm, &ts));
6509566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dm, &s));
6519566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetChart(s, &pStart, &pEnd));
6529566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetNumFields(s, &Nf));
6539566063dSJacob Faibussowitsch   PetscCall(VecGetArray(lv, &a));
6549566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(tv, &ta));
655ca3d3a14SMatthew G. Knepley   for (p = pStart; p < pEnd; ++p) {
656ca3d3a14SMatthew G. Knepley     for (f = 0; f < Nf; ++f) {
6579566063dSJacob Faibussowitsch       PetscCall(DMPlexPointLocalFieldRef(dm, p, f, a, &va));
6589566063dSJacob Faibussowitsch       PetscCall(DMPlexBasisTransformField_Internal(dm, tdm, tv, p, f, l2g, va));
659ca3d3a14SMatthew G. Knepley     }
660ca3d3a14SMatthew G. Knepley   }
6619566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(lv, &a));
6629566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(tv, &ta));
6633ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
664ca3d3a14SMatthew G. Knepley }
665ca3d3a14SMatthew G. Knepley 
666ca3d3a14SMatthew G. Knepley /*@
667ca3d3a14SMatthew G. Knepley   DMPlexGlobalToLocalBasis - Transform the values in the given local vector from the global basis to the local basis
668ca3d3a14SMatthew G. Knepley 
669ca3d3a14SMatthew G. Knepley   Input Parameters:
670a1cb98faSBarry Smith + dm - The `DM`
671ca3d3a14SMatthew G. Knepley - lv - A local vector with values in the global basis
672ca3d3a14SMatthew G. Knepley 
673ca3d3a14SMatthew G. Knepley   Output Parameters:
674ca3d3a14SMatthew G. Knepley . lv - A local vector with values in the local basis
675ca3d3a14SMatthew G. Knepley 
676ca3d3a14SMatthew G. Knepley   Level: developer
677ca3d3a14SMatthew G. Knepley 
678a1cb98faSBarry Smith   Note:
679a1cb98faSBarry Smith   This method is only intended to be called inside `DMGlobalToLocal()`. It is unlikely that a user will have a local vector full of coefficients for the global basis unless they are reimplementing GlobalToLocal.
680a1cb98faSBarry Smith 
681a1cb98faSBarry Smith .seealso: [](chapter_unstructured), `DM`, `DMPLEX`, `DMPlexLocalToGlobalBasis()`, `DMGetLocalSection()`, `DMPlexCreateBasisRotation()`
682ca3d3a14SMatthew G. Knepley @*/
683d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexGlobalToLocalBasis(DM dm, Vec lv)
684d71ae5a4SJacob Faibussowitsch {
685ca3d3a14SMatthew G. Knepley   PetscFunctionBegin;
686ca3d3a14SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
687ca3d3a14SMatthew G. Knepley   PetscValidHeaderSpecific(lv, VEC_CLASSID, 2);
6889566063dSJacob Faibussowitsch   PetscCall(DMPlexBasisTransform_Internal(dm, lv, PETSC_FALSE));
6893ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
690ca3d3a14SMatthew G. Knepley }
691ca3d3a14SMatthew G. Knepley 
692ca3d3a14SMatthew G. Knepley /*@
693ca3d3a14SMatthew G. Knepley   DMPlexLocalToGlobalBasis - Transform the values in the given local vector from the local basis to the global basis
694ca3d3a14SMatthew G. Knepley 
695ca3d3a14SMatthew G. Knepley   Input Parameters:
696a1cb98faSBarry Smith + dm - The `DM`
697ca3d3a14SMatthew G. Knepley - lv - A local vector with values in the local basis
698ca3d3a14SMatthew G. Knepley 
699ca3d3a14SMatthew G. Knepley   Output Parameters:
700ca3d3a14SMatthew G. Knepley . lv - A local vector with values in the global basis
701ca3d3a14SMatthew G. Knepley 
702ca3d3a14SMatthew G. Knepley   Level: developer
703ca3d3a14SMatthew G. Knepley 
704a1cb98faSBarry Smith   Note:
705a1cb98faSBarry Smith   This method is only intended to be called inside `DMGlobalToLocal()`. It is unlikely that a user would want a local vector full of coefficients for the global basis unless they are reimplementing GlobalToLocal.
706a1cb98faSBarry Smith 
707a1cb98faSBarry Smith .seealso: [](chapter_unstructured), `DM`, `DMPLEX`, `DMPlexGlobalToLocalBasis()`, `DMGetLocalSection()`, `DMPlexCreateBasisRotation()`
708ca3d3a14SMatthew G. Knepley @*/
709d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexLocalToGlobalBasis(DM dm, Vec lv)
710d71ae5a4SJacob Faibussowitsch {
711ca3d3a14SMatthew G. Knepley   PetscFunctionBegin;
712ca3d3a14SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
713ca3d3a14SMatthew G. Knepley   PetscValidHeaderSpecific(lv, VEC_CLASSID, 2);
7149566063dSJacob Faibussowitsch   PetscCall(DMPlexBasisTransform_Internal(dm, lv, PETSC_TRUE));
7153ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
716ca3d3a14SMatthew G. Knepley }
717ca3d3a14SMatthew G. Knepley 
718ca3d3a14SMatthew G. Knepley /*@
719ca3d3a14SMatthew G. Knepley   DMPlexCreateBasisRotation - Create an internal transformation from the global basis, used to specify boundary conditions
720ca3d3a14SMatthew G. Knepley     and global solutions, to a local basis, appropriate for discretization integrals and assembly.
721ca3d3a14SMatthew G. Knepley 
722ca3d3a14SMatthew G. Knepley   Input Parameters:
723a1cb98faSBarry Smith + dm    - The `DM`
724ca3d3a14SMatthew G. Knepley . alpha - The first Euler angle, and in 2D the only one
725ca3d3a14SMatthew G. Knepley . beta  - The second Euler angle
726f0fc11ceSJed Brown - gamma - The third Euler angle
727ca3d3a14SMatthew G. Knepley 
728ca3d3a14SMatthew G. Knepley   Level: developer
729ca3d3a14SMatthew G. Knepley 
730a1cb98faSBarry Smith   Note:
731a1cb98faSBarry Smith   Following https://en.wikipedia.org/wiki/Euler_angles, we will specify Euler angles by extrinsic rotations, meaning that
732a1cb98faSBarry Smith   we rotate with respect to a fixed initial coordinate system, the local basis (x-y-z). The global basis (X-Y-Z) is reached as follows
733a1cb98faSBarry Smith .vb
734a1cb98faSBarry Smith    The XYZ system rotates about the z axis by alpha. The X axis is now at angle alpha with respect to the x axis.
735a1cb98faSBarry Smith    The XYZ system rotates again about the x axis by beta. The Z axis is now at angle beta with respect to the z axis.
736a1cb98faSBarry Smith    The XYZ system rotates a third time about the z axis by gamma.
737a1cb98faSBarry Smith .ve
738a1cb98faSBarry Smith 
739a1cb98faSBarry Smith .seealso: [](chapter_unstructured), `DM`, `DMPLEX`, `DMPlexGlobalToLocalBasis()`, `DMPlexLocalToGlobalBasis()`
740ca3d3a14SMatthew G. Knepley @*/
741d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexCreateBasisRotation(DM dm, PetscReal alpha, PetscReal beta, PetscReal gamma)
742d71ae5a4SJacob Faibussowitsch {
743ca3d3a14SMatthew G. Knepley   RotCtx  *rc;
744ca3d3a14SMatthew G. Knepley   PetscInt cdim;
745ca3d3a14SMatthew G. Knepley 
746362febeeSStefano Zampini   PetscFunctionBegin;
7479566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateDim(dm, &cdim));
7489566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(1, &rc));
749ca3d3a14SMatthew G. Knepley   dm->transformCtx       = rc;
750ca3d3a14SMatthew G. Knepley   dm->transformSetUp     = DMPlexBasisTransformSetUp_Rotation_Internal;
751ca3d3a14SMatthew G. Knepley   dm->transformDestroy   = DMPlexBasisTransformDestroy_Rotation_Internal;
752ca3d3a14SMatthew G. Knepley   dm->transformGetMatrix = DMPlexBasisTransformGetMatrix_Rotation_Internal;
753ca3d3a14SMatthew G. Knepley   rc->dim                = cdim;
754ca3d3a14SMatthew G. Knepley   rc->alpha              = alpha;
755ca3d3a14SMatthew G. Knepley   rc->beta               = beta;
756ca3d3a14SMatthew G. Knepley   rc->gamma              = gamma;
7579566063dSJacob Faibussowitsch   PetscCall((*dm->transformSetUp)(dm, dm->transformCtx));
7589566063dSJacob Faibussowitsch   PetscCall(DMConstructBasisTransform_Internal(dm));
7593ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
760ca3d3a14SMatthew G. Knepley }
761ca3d3a14SMatthew G. Knepley 
762b278463cSMatthew G. Knepley /*@C
763ece3a9fcSMatthew G. Knepley   DMPlexInsertBoundaryValuesEssential - Insert boundary values into a local vector using a function of the coordinates
764b278463cSMatthew G. Knepley 
765b278463cSMatthew G. Knepley   Input Parameters:
766a1cb98faSBarry Smith + dm     - The `DM`, with a `PetscDS` that matches the problem being constrained
767b278463cSMatthew G. Knepley . time   - The time
768b278463cSMatthew G. Knepley . field  - The field to constrain
7691c531cf8SMatthew G. Knepley . Nc     - The number of constrained field components, or 0 for all components
7701c531cf8SMatthew G. Knepley . comps  - An array of constrained component numbers, or NULL for all components
771a1cb98faSBarry Smith . label  - The `DMLabel` defining constrained points
772a1cb98faSBarry Smith . numids - The number of `DMLabel` ids for constrained points
773b278463cSMatthew G. Knepley . ids    - An array of ids for constrained points
774b278463cSMatthew G. Knepley . func   - A pointwise function giving boundary values
775b278463cSMatthew G. Knepley - ctx    - An optional user context for bcFunc
776b278463cSMatthew G. Knepley 
777b278463cSMatthew G. Knepley   Output Parameter:
778b278463cSMatthew G. Knepley . locX   - A local vector to receives the boundary values
779b278463cSMatthew G. Knepley 
780b278463cSMatthew G. Knepley   Level: developer
781b278463cSMatthew G. Knepley 
782a1cb98faSBarry Smith .seealso: [](chapter_unstructured), `DM`, `DMPLEX`, `DMLabel`, `DMPlexInsertBoundaryValuesEssentialField()`, `DMPlexInsertBoundaryValuesEssentialBdField()`, `DMAddBoundary()`
783b278463cSMatthew G. Knepley @*/
784d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexInsertBoundaryValuesEssential(DM dm, PetscReal time, PetscInt field, PetscInt Nc, const PetscInt comps[], DMLabel label, PetscInt numids, const PetscInt ids[], PetscErrorCode (*func)(PetscInt, PetscReal, const PetscReal[], PetscInt, PetscScalar *, void *), void *ctx, Vec locX)
785d71ae5a4SJacob Faibussowitsch {
7860163fd50SMatthew G. Knepley   PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal x[], PetscInt, PetscScalar *u, void *ctx);
78755f2e967SMatthew G. Knepley   void   **ctxs;
788d7ddef95SMatthew G. Knepley   PetscInt numFields;
789d7ddef95SMatthew G. Knepley 
790d7ddef95SMatthew G. Knepley   PetscFunctionBegin;
7919566063dSJacob Faibussowitsch   PetscCall(DMGetNumFields(dm, &numFields));
7929566063dSJacob Faibussowitsch   PetscCall(PetscCalloc2(numFields, &funcs, numFields, &ctxs));
793d7ddef95SMatthew G. Knepley   funcs[field] = func;
794d7ddef95SMatthew G. Knepley   ctxs[field]  = ctx;
7959566063dSJacob Faibussowitsch   PetscCall(DMProjectFunctionLabelLocal(dm, time, label, numids, ids, Nc, comps, funcs, ctxs, INSERT_BC_VALUES, locX));
7969566063dSJacob Faibussowitsch   PetscCall(PetscFree2(funcs, ctxs));
7973ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
798d7ddef95SMatthew G. Knepley }
799d7ddef95SMatthew G. Knepley 
800b278463cSMatthew G. Knepley /*@C
801ece3a9fcSMatthew G. Knepley   DMPlexInsertBoundaryValuesEssentialField - Insert boundary values into a local vector using a function of the coordinates and field data
802b278463cSMatthew G. Knepley 
803b278463cSMatthew G. Knepley   Input Parameters:
804a1cb98faSBarry Smith + dm     - The `DM`, with a `PetscDS` that matches the problem being constrained
805b278463cSMatthew G. Knepley . time   - The time
806b278463cSMatthew G. Knepley . locU   - A local vector with the input solution values
807b278463cSMatthew G. Knepley . field  - The field to constrain
8081c531cf8SMatthew G. Knepley . Nc     - The number of constrained field components, or 0 for all components
8091c531cf8SMatthew G. Knepley . comps  - An array of constrained component numbers, or NULL for all components
810a1cb98faSBarry Smith . label  - The `DMLabel` defining constrained points
811a1cb98faSBarry Smith . numids - The number of `DMLabel` ids for constrained points
812b278463cSMatthew G. Knepley . ids    - An array of ids for constrained points
813b278463cSMatthew G. Knepley . func   - A pointwise function giving boundary values
814b278463cSMatthew G. Knepley - ctx    - An optional user context for bcFunc
815b278463cSMatthew G. Knepley 
816b278463cSMatthew G. Knepley   Output Parameter:
817b278463cSMatthew G. Knepley . locX   - A local vector to receives the boundary values
818b278463cSMatthew G. Knepley 
819b278463cSMatthew G. Knepley   Level: developer
820b278463cSMatthew G. Knepley 
821a1cb98faSBarry Smith .seealso: [](chapter_unstructured), `DM`, `DMPLEX`, `DMPlexInsertBoundaryValuesEssential()`, `DMPlexInsertBoundaryValuesEssentialBdField()`, `DMAddBoundary()`
822b278463cSMatthew G. Knepley @*/
823d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexInsertBoundaryValuesEssentialField(DM dm, PetscReal time, Vec locU, PetscInt field, PetscInt Nc, const PetscInt comps[], DMLabel label, PetscInt numids, const PetscInt ids[], void (*func)(PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], PetscReal, const PetscReal[], PetscInt, const PetscScalar[], PetscScalar[]), void *ctx, Vec locX)
824d71ae5a4SJacob Faibussowitsch {
8259371c9d4SSatish Balay   void (**funcs)(PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], PetscReal, const PetscReal[], PetscInt, const PetscScalar[], PetscScalar[]);
826c60e475cSMatthew G. Knepley   void   **ctxs;
827c60e475cSMatthew G. Knepley   PetscInt numFields;
828c60e475cSMatthew G. Knepley 
829c60e475cSMatthew G. Knepley   PetscFunctionBegin;
8309566063dSJacob Faibussowitsch   PetscCall(DMGetNumFields(dm, &numFields));
8319566063dSJacob Faibussowitsch   PetscCall(PetscCalloc2(numFields, &funcs, numFields, &ctxs));
832c60e475cSMatthew G. Knepley   funcs[field] = func;
833c60e475cSMatthew G. Knepley   ctxs[field]  = ctx;
8349566063dSJacob Faibussowitsch   PetscCall(DMProjectFieldLabelLocal(dm, time, label, numids, ids, Nc, comps, locU, funcs, INSERT_BC_VALUES, locX));
8359566063dSJacob Faibussowitsch   PetscCall(PetscFree2(funcs, ctxs));
8363ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
837c60e475cSMatthew G. Knepley }
838c60e475cSMatthew G. Knepley 
839b278463cSMatthew G. Knepley /*@C
840d5b43468SJose E. Roman   DMPlexInsertBoundaryValuesEssentialBdField - Insert boundary values into a local vector using a function of the coordinates and boundary field data
841ece3a9fcSMatthew G. Knepley 
842ece3a9fcSMatthew G. Knepley   Collective on dm
843ece3a9fcSMatthew G. Knepley 
844ece3a9fcSMatthew G. Knepley   Input Parameters:
845a1cb98faSBarry Smith + dm     - The `DM`, with a `PetscDS` that matches the problem being constrained
846ece3a9fcSMatthew G. Knepley . time   - The time
847ece3a9fcSMatthew G. Knepley . locU   - A local vector with the input solution values
848ece3a9fcSMatthew G. Knepley . field  - The field to constrain
849ece3a9fcSMatthew G. Knepley . Nc     - The number of constrained field components, or 0 for all components
850ece3a9fcSMatthew G. Knepley . comps  - An array of constrained component numbers, or NULL for all components
851a1cb98faSBarry Smith . label  - The `DMLabel` defining constrained points
852a1cb98faSBarry Smith . numids - The number of `DMLabel` ids for constrained points
853ece3a9fcSMatthew G. Knepley . ids    - An array of ids for constrained points
854ece3a9fcSMatthew G. Knepley . func   - A pointwise function giving boundary values, the calling sequence is given in DMProjectBdFieldLabelLocal()
855ece3a9fcSMatthew G. Knepley - ctx    - An optional user context for bcFunc
856ece3a9fcSMatthew G. Knepley 
857ece3a9fcSMatthew G. Knepley   Output Parameter:
858ece3a9fcSMatthew G. Knepley . locX   - A local vector to receive the boundary values
859ece3a9fcSMatthew G. Knepley 
860ece3a9fcSMatthew G. Knepley   Level: developer
861ece3a9fcSMatthew G. Knepley 
862a1cb98faSBarry Smith .seealso: [](chapter_unstructured), `DM`, `DMPLEX`, `DMProjectBdFieldLabelLocal()`, `DMPlexInsertBoundaryValuesEssential()`, `DMPlexInsertBoundaryValuesEssentialField()`, `DMAddBoundary()`
863ece3a9fcSMatthew G. Knepley @*/
864d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexInsertBoundaryValuesEssentialBdField(DM dm, PetscReal time, Vec locU, PetscInt field, PetscInt Nc, const PetscInt comps[], DMLabel label, PetscInt numids, const PetscInt ids[], void (*func)(PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], PetscReal, const PetscReal[], const PetscReal[], PetscInt, const PetscScalar[], PetscScalar[]), void *ctx, Vec locX)
865d71ae5a4SJacob Faibussowitsch {
8669371c9d4SSatish Balay   void (**funcs)(PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], PetscReal, const PetscReal[], const PetscReal[], PetscInt, const PetscScalar[], PetscScalar[]);
867ece3a9fcSMatthew G. Knepley   void   **ctxs;
868ece3a9fcSMatthew G. Knepley   PetscInt numFields;
869ece3a9fcSMatthew G. Knepley 
870ece3a9fcSMatthew G. Knepley   PetscFunctionBegin;
8719566063dSJacob Faibussowitsch   PetscCall(DMGetNumFields(dm, &numFields));
8729566063dSJacob Faibussowitsch   PetscCall(PetscCalloc2(numFields, &funcs, numFields, &ctxs));
873ece3a9fcSMatthew G. Knepley   funcs[field] = func;
874ece3a9fcSMatthew G. Knepley   ctxs[field]  = ctx;
8759566063dSJacob Faibussowitsch   PetscCall(DMProjectBdFieldLabelLocal(dm, time, label, numids, ids, Nc, comps, locU, funcs, INSERT_BC_VALUES, locX));
8769566063dSJacob Faibussowitsch   PetscCall(PetscFree2(funcs, ctxs));
8773ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
878ece3a9fcSMatthew G. Knepley }
879ece3a9fcSMatthew G. Knepley 
880ece3a9fcSMatthew G. Knepley /*@C
881b278463cSMatthew G. Knepley   DMPlexInsertBoundaryValuesRiemann - Insert boundary values into a local vector
882b278463cSMatthew G. Knepley 
883b278463cSMatthew G. Knepley   Input Parameters:
884a1cb98faSBarry Smith + dm     - The `DM`, with a `PetscDS` that matches the problem being constrained
885b278463cSMatthew G. Knepley . time   - The time
886b278463cSMatthew G. Knepley . faceGeometry - A vector with the FVM face geometry information
887b278463cSMatthew G. Knepley . cellGeometry - A vector with the FVM cell geometry information
888b278463cSMatthew G. Knepley . Grad         - A vector with the FVM cell gradient information
889b278463cSMatthew G. Knepley . field  - The field to constrain
8901c531cf8SMatthew G. Knepley . Nc     - The number of constrained field components, or 0 for all components
8911c531cf8SMatthew G. Knepley . comps  - An array of constrained component numbers, or NULL for all components
892a1cb98faSBarry Smith . label  - The `DMLabel` defining constrained points
893a1cb98faSBarry Smith . numids - The number of `DMLabel` ids for constrained points
894b278463cSMatthew G. Knepley . ids    - An array of ids for constrained points
895b278463cSMatthew G. Knepley . func   - A pointwise function giving boundary values
896b278463cSMatthew G. Knepley - ctx    - An optional user context for bcFunc
897b278463cSMatthew G. Knepley 
898b278463cSMatthew G. Knepley   Output Parameter:
899b278463cSMatthew G. Knepley . locX   - A local vector to receives the boundary values
900b278463cSMatthew G. Knepley 
901b278463cSMatthew G. Knepley   Level: developer
902b278463cSMatthew G. Knepley 
903a1cb98faSBarry Smith   Note:
904a1cb98faSBarry Smith   This implementation currently ignores the numcomps/comps argument from `DMAddBoundary()`
905a1cb98faSBarry Smith 
906a1cb98faSBarry Smith .seealso: [](chapter_unstructured), `DM`, `DMPLEX`, `DMPlexInsertBoundaryValuesEssential()`, `DMPlexInsertBoundaryValuesEssentialField()`, `DMAddBoundary()`
907b278463cSMatthew G. Knepley @*/
908d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexInsertBoundaryValuesRiemann(DM dm, PetscReal time, Vec faceGeometry, Vec cellGeometry, Vec Grad, PetscInt field, PetscInt Nc, const PetscInt comps[], DMLabel label, PetscInt numids, const PetscInt ids[], PetscErrorCode (*func)(PetscReal, const PetscReal *, const PetscReal *, const PetscScalar *, PetscScalar *, void *), void *ctx, Vec locX)
909d71ae5a4SJacob Faibussowitsch {
91061f58d28SMatthew G. Knepley   PetscDS            prob;
911da97024aSMatthew G. Knepley   PetscSF            sf;
912d7ddef95SMatthew G. Knepley   DM                 dmFace, dmCell, dmGrad;
91320369375SToby Isaac   const PetscScalar *facegeom, *cellgeom = NULL, *grad;
914da97024aSMatthew G. Knepley   const PetscInt    *leaves;
915d7ddef95SMatthew G. Knepley   PetscScalar       *x, *fx;
916520b3818SMatthew G. Knepley   PetscInt           dim, nleaves, loc, fStart, fEnd, pdim, i;
9173ba16761SJacob Faibussowitsch   PetscErrorCode     ierru = PETSC_SUCCESS;
918d7ddef95SMatthew G. Knepley 
919d7ddef95SMatthew G. Knepley   PetscFunctionBegin;
9209566063dSJacob Faibussowitsch   PetscCall(DMGetPointSF(dm, &sf));
9219566063dSJacob Faibussowitsch   PetscCall(PetscSFGetGraph(sf, NULL, &nleaves, &leaves, NULL));
922da97024aSMatthew G. Knepley   nleaves = PetscMax(0, nleaves);
9239566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dm, &dim));
9249566063dSJacob Faibussowitsch   PetscCall(DMPlexGetHeightStratum(dm, 1, &fStart, &fEnd));
9259566063dSJacob Faibussowitsch   PetscCall(DMGetDS(dm, &prob));
9269566063dSJacob Faibussowitsch   PetscCall(VecGetDM(faceGeometry, &dmFace));
9279566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(faceGeometry, &facegeom));
92820369375SToby Isaac   if (cellGeometry) {
9299566063dSJacob Faibussowitsch     PetscCall(VecGetDM(cellGeometry, &dmCell));
9309566063dSJacob Faibussowitsch     PetscCall(VecGetArrayRead(cellGeometry, &cellgeom));
93120369375SToby Isaac   }
932d7ddef95SMatthew G. Knepley   if (Grad) {
933c0a6632aSMatthew G. Knepley     PetscFV fv;
934c0a6632aSMatthew G. Knepley 
9359566063dSJacob Faibussowitsch     PetscCall(PetscDSGetDiscretization(prob, field, (PetscObject *)&fv));
9369566063dSJacob Faibussowitsch     PetscCall(VecGetDM(Grad, &dmGrad));
9379566063dSJacob Faibussowitsch     PetscCall(VecGetArrayRead(Grad, &grad));
9389566063dSJacob Faibussowitsch     PetscCall(PetscFVGetNumComponents(fv, &pdim));
9399566063dSJacob Faibussowitsch     PetscCall(DMGetWorkArray(dm, pdim, MPIU_SCALAR, &fx));
940d7ddef95SMatthew G. Knepley   }
9419566063dSJacob Faibussowitsch   PetscCall(VecGetArray(locX, &x));
942d7ddef95SMatthew G. Knepley   for (i = 0; i < numids; ++i) {
943d7ddef95SMatthew G. Knepley     IS              faceIS;
944d7ddef95SMatthew G. Knepley     const PetscInt *faces;
945d7ddef95SMatthew G. Knepley     PetscInt        numFaces, f;
946d7ddef95SMatthew G. Knepley 
9479566063dSJacob Faibussowitsch     PetscCall(DMLabelGetStratumIS(label, ids[i], &faceIS));
948d7ddef95SMatthew G. Knepley     if (!faceIS) continue; /* No points with that id on this process */
9499566063dSJacob Faibussowitsch     PetscCall(ISGetLocalSize(faceIS, &numFaces));
9509566063dSJacob Faibussowitsch     PetscCall(ISGetIndices(faceIS, &faces));
951d7ddef95SMatthew G. Knepley     for (f = 0; f < numFaces; ++f) {
952d7ddef95SMatthew G. Knepley       const PetscInt   face = faces[f], *cells;
953640bce14SSatish Balay       PetscFVFaceGeom *fg;
954d7ddef95SMatthew G. Knepley 
955d7ddef95SMatthew G. Knepley       if ((face < fStart) || (face >= fEnd)) continue; /* Refinement adds non-faces to labels */
9569566063dSJacob Faibussowitsch       PetscCall(PetscFindInt(face, nleaves, (PetscInt *)leaves, &loc));
957da97024aSMatthew G. Knepley       if (loc >= 0) continue;
9589566063dSJacob Faibussowitsch       PetscCall(DMPlexPointLocalRead(dmFace, face, facegeom, &fg));
9599566063dSJacob Faibussowitsch       PetscCall(DMPlexGetSupport(dm, face, &cells));
960d7ddef95SMatthew G. Knepley       if (Grad) {
961640bce14SSatish Balay         PetscFVCellGeom *cg;
962640bce14SSatish Balay         PetscScalar     *cx, *cgrad;
963d7ddef95SMatthew G. Knepley         PetscScalar     *xG;
964d7ddef95SMatthew G. Knepley         PetscReal        dx[3];
965d7ddef95SMatthew G. Knepley         PetscInt         d;
966d7ddef95SMatthew G. Knepley 
9679566063dSJacob Faibussowitsch         PetscCall(DMPlexPointLocalRead(dmCell, cells[0], cellgeom, &cg));
9689566063dSJacob Faibussowitsch         PetscCall(DMPlexPointLocalRead(dm, cells[0], x, &cx));
9699566063dSJacob Faibussowitsch         PetscCall(DMPlexPointLocalRead(dmGrad, cells[0], grad, &cgrad));
9709566063dSJacob Faibussowitsch         PetscCall(DMPlexPointLocalFieldRef(dm, cells[1], field, x, &xG));
971d7ddef95SMatthew G. Knepley         DMPlex_WaxpyD_Internal(dim, -1, cg->centroid, fg->centroid, dx);
972d7ddef95SMatthew G. Knepley         for (d = 0; d < pdim; ++d) fx[d] = cx[d] + DMPlex_DotD_Internal(dim, &cgrad[d * dim], dx);
9739566063dSJacob Faibussowitsch         PetscCall((*func)(time, fg->centroid, fg->normal, fx, xG, ctx));
974d7ddef95SMatthew G. Knepley       } else {
975640bce14SSatish Balay         PetscScalar *xI;
976d7ddef95SMatthew G. Knepley         PetscScalar *xG;
977d7ddef95SMatthew G. Knepley 
9789566063dSJacob Faibussowitsch         PetscCall(DMPlexPointLocalRead(dm, cells[0], x, &xI));
9799566063dSJacob Faibussowitsch         PetscCall(DMPlexPointLocalFieldRef(dm, cells[1], field, x, &xG));
980e735a8a9SMatthew G. Knepley         ierru = (*func)(time, fg->centroid, fg->normal, xI, xG, ctx);
981e735a8a9SMatthew G. Knepley         if (ierru) {
9829566063dSJacob Faibussowitsch           PetscCall(ISRestoreIndices(faceIS, &faces));
9839566063dSJacob Faibussowitsch           PetscCall(ISDestroy(&faceIS));
984e735a8a9SMatthew G. Knepley           goto cleanup;
985e735a8a9SMatthew G. Knepley         }
986d7ddef95SMatthew G. Knepley       }
987d7ddef95SMatthew G. Knepley     }
9889566063dSJacob Faibussowitsch     PetscCall(ISRestoreIndices(faceIS, &faces));
9899566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&faceIS));
990d7ddef95SMatthew G. Knepley   }
991e735a8a9SMatthew G. Knepley cleanup:
9929566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(locX, &x));
993d7ddef95SMatthew G. Knepley   if (Grad) {
9949566063dSJacob Faibussowitsch     PetscCall(DMRestoreWorkArray(dm, pdim, MPIU_SCALAR, &fx));
9959566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayRead(Grad, &grad));
996d7ddef95SMatthew G. Knepley   }
9979566063dSJacob Faibussowitsch   if (cellGeometry) PetscCall(VecRestoreArrayRead(cellGeometry, &cellgeom));
9989566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(faceGeometry, &facegeom));
9999566063dSJacob Faibussowitsch   PetscCall(ierru);
10003ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1001d7ddef95SMatthew G. Knepley }
1002d7ddef95SMatthew G. Knepley 
1003d71ae5a4SJacob Faibussowitsch static PetscErrorCode zero(PetscInt dim, PetscReal time, const PetscReal x[], PetscInt Nc, PetscScalar *u, void *ctx)
1004d71ae5a4SJacob Faibussowitsch {
10050c364540SMatthew G. Knepley   PetscInt c;
10060c364540SMatthew G. Knepley   for (c = 0; c < Nc; ++c) u[c] = 0.0;
10073ba16761SJacob Faibussowitsch   return PETSC_SUCCESS;
10080c364540SMatthew G. Knepley }
10090c364540SMatthew G. Knepley 
1010d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexInsertBoundaryValues_Plex(DM dm, PetscBool insertEssential, Vec locX, PetscReal time, Vec faceGeomFVM, Vec cellGeomFVM, Vec gradFVM)
1011d71ae5a4SJacob Faibussowitsch {
10120c364540SMatthew G. Knepley   PetscObject isZero;
1013e5e52638SMatthew G. Knepley   PetscDS     prob;
1014d7ddef95SMatthew G. Knepley   PetscInt    numBd, b;
101555f2e967SMatthew G. Knepley 
101655f2e967SMatthew G. Knepley   PetscFunctionBegin;
10179566063dSJacob Faibussowitsch   PetscCall(DMGetDS(dm, &prob));
10189566063dSJacob Faibussowitsch   PetscCall(PetscDSGetNumBoundary(prob, &numBd));
10199566063dSJacob Faibussowitsch   PetscCall(PetscObjectQuery((PetscObject)locX, "__Vec_bc_zero__", &isZero));
102055f2e967SMatthew G. Knepley   for (b = 0; b < numBd; ++b) {
102145480ffeSMatthew G. Knepley     PetscWeakForm           wf;
1022f971fd6bSMatthew G. Knepley     DMBoundaryConditionType type;
102345480ffeSMatthew G. Knepley     const char             *name;
1024d7ddef95SMatthew G. Knepley     DMLabel                 label;
10251c531cf8SMatthew G. Knepley     PetscInt                field, Nc;
10261c531cf8SMatthew G. Knepley     const PetscInt         *comps;
1027d7ddef95SMatthew G. Knepley     PetscObject             obj;
1028d7ddef95SMatthew G. Knepley     PetscClassId            id;
102945480ffeSMatthew G. Knepley     void (*bvfunc)(void);
1030d7ddef95SMatthew G. Knepley     PetscInt        numids;
1031d7ddef95SMatthew G. Knepley     const PetscInt *ids;
103255f2e967SMatthew G. Knepley     void           *ctx;
103355f2e967SMatthew G. Knepley 
10349566063dSJacob Faibussowitsch     PetscCall(PetscDSGetBoundary(prob, b, &wf, &type, &name, &label, &numids, &ids, &field, &Nc, &comps, &bvfunc, NULL, &ctx));
1035f971fd6bSMatthew G. Knepley     if (insertEssential != (type & DM_BC_ESSENTIAL)) continue;
10369566063dSJacob Faibussowitsch     PetscCall(DMGetField(dm, field, NULL, &obj));
10379566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetClassId(obj, &id));
1038d7ddef95SMatthew G. Knepley     if (id == PETSCFE_CLASSID) {
1039c60e475cSMatthew G. Knepley       switch (type) {
1040c60e475cSMatthew G. Knepley         /* for FEM, there is no insertion to be done for non-essential boundary conditions */
10419371c9d4SSatish Balay       case DM_BC_ESSENTIAL: {
104245480ffeSMatthew G. Knepley         PetscSimplePointFunc func = (PetscSimplePointFunc)bvfunc;
104345480ffeSMatthew G. Knepley 
104445480ffeSMatthew G. Knepley         if (isZero) func = zero;
10459566063dSJacob Faibussowitsch         PetscCall(DMPlexLabelAddCells(dm, label));
10469566063dSJacob Faibussowitsch         PetscCall(DMPlexInsertBoundaryValuesEssential(dm, time, field, Nc, comps, label, numids, ids, func, ctx, locX));
10479566063dSJacob Faibussowitsch         PetscCall(DMPlexLabelClearCells(dm, label));
10489371c9d4SSatish Balay       } break;
10499371c9d4SSatish Balay       case DM_BC_ESSENTIAL_FIELD: {
105045480ffeSMatthew G. Knepley         PetscPointFunc func = (PetscPointFunc)bvfunc;
105145480ffeSMatthew G. Knepley 
10529566063dSJacob Faibussowitsch         PetscCall(DMPlexLabelAddCells(dm, label));
10539566063dSJacob Faibussowitsch         PetscCall(DMPlexInsertBoundaryValuesEssentialField(dm, time, locX, field, Nc, comps, label, numids, ids, func, ctx, locX));
10549566063dSJacob Faibussowitsch         PetscCall(DMPlexLabelClearCells(dm, label));
10559371c9d4SSatish Balay       } break;
1056d71ae5a4SJacob Faibussowitsch       default:
1057d71ae5a4SJacob Faibussowitsch         break;
1058c60e475cSMatthew G. Knepley       }
1059d7ddef95SMatthew G. Knepley     } else if (id == PETSCFV_CLASSID) {
106045480ffeSMatthew G. Knepley       {
106145480ffeSMatthew G. Knepley         PetscErrorCode (*func)(PetscReal, const PetscReal *, const PetscReal *, const PetscScalar *, PetscScalar *, void *) = (PetscErrorCode(*)(PetscReal, const PetscReal *, const PetscReal *, const PetscScalar *, PetscScalar *, void *))bvfunc;
106245480ffeSMatthew G. Knepley 
106343ea7facSMatthew G. Knepley         if (!faceGeomFVM) continue;
10649566063dSJacob Faibussowitsch         PetscCall(DMPlexInsertBoundaryValuesRiemann(dm, time, faceGeomFVM, cellGeomFVM, gradFVM, field, Nc, comps, label, numids, ids, func, ctx, locX));
106545480ffeSMatthew G. Knepley       }
106663a3b9bcSJacob Faibussowitsch     } else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, field);
106755f2e967SMatthew G. Knepley   }
10683ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
106955f2e967SMatthew G. Knepley }
107055f2e967SMatthew G. Knepley 
1071d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexInsertTimeDerivativeBoundaryValues_Plex(DM dm, PetscBool insertEssential, Vec locX, PetscReal time, Vec faceGeomFVM, Vec cellGeomFVM, Vec gradFVM)
1072d71ae5a4SJacob Faibussowitsch {
107356cf3b9cSMatthew G. Knepley   PetscObject isZero;
107456cf3b9cSMatthew G. Knepley   PetscDS     prob;
107556cf3b9cSMatthew G. Knepley   PetscInt    numBd, b;
107656cf3b9cSMatthew G. Knepley 
107756cf3b9cSMatthew G. Knepley   PetscFunctionBegin;
10783ba16761SJacob Faibussowitsch   if (!locX) PetscFunctionReturn(PETSC_SUCCESS);
10799566063dSJacob Faibussowitsch   PetscCall(DMGetDS(dm, &prob));
10809566063dSJacob Faibussowitsch   PetscCall(PetscDSGetNumBoundary(prob, &numBd));
10819566063dSJacob Faibussowitsch   PetscCall(PetscObjectQuery((PetscObject)locX, "__Vec_bc_zero__", &isZero));
108256cf3b9cSMatthew G. Knepley   for (b = 0; b < numBd; ++b) {
108345480ffeSMatthew G. Knepley     PetscWeakForm           wf;
108456cf3b9cSMatthew G. Knepley     DMBoundaryConditionType type;
108545480ffeSMatthew G. Knepley     const char             *name;
108656cf3b9cSMatthew G. Knepley     DMLabel                 label;
108756cf3b9cSMatthew G. Knepley     PetscInt                field, Nc;
108856cf3b9cSMatthew G. Knepley     const PetscInt         *comps;
108956cf3b9cSMatthew G. Knepley     PetscObject             obj;
109056cf3b9cSMatthew G. Knepley     PetscClassId            id;
109156cf3b9cSMatthew G. Knepley     PetscInt                numids;
109256cf3b9cSMatthew G. Knepley     const PetscInt         *ids;
109345480ffeSMatthew G. Knepley     void (*bvfunc)(void);
109456cf3b9cSMatthew G. Knepley     void *ctx;
109556cf3b9cSMatthew G. Knepley 
10969566063dSJacob Faibussowitsch     PetscCall(PetscDSGetBoundary(prob, b, &wf, &type, &name, &label, &numids, &ids, &field, &Nc, &comps, NULL, &bvfunc, &ctx));
109756cf3b9cSMatthew G. Knepley     if (insertEssential != (type & DM_BC_ESSENTIAL)) continue;
10989566063dSJacob Faibussowitsch     PetscCall(DMGetField(dm, field, NULL, &obj));
10999566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetClassId(obj, &id));
110056cf3b9cSMatthew G. Knepley     if (id == PETSCFE_CLASSID) {
110156cf3b9cSMatthew G. Knepley       switch (type) {
110256cf3b9cSMatthew G. Knepley         /* for FEM, there is no insertion to be done for non-essential boundary conditions */
11039371c9d4SSatish Balay       case DM_BC_ESSENTIAL: {
110445480ffeSMatthew G. Knepley         PetscSimplePointFunc func_t = (PetscSimplePointFunc)bvfunc;
110545480ffeSMatthew G. Knepley 
110645480ffeSMatthew G. Knepley         if (isZero) func_t = zero;
11079566063dSJacob Faibussowitsch         PetscCall(DMPlexLabelAddCells(dm, label));
11089566063dSJacob Faibussowitsch         PetscCall(DMPlexInsertBoundaryValuesEssential(dm, time, field, Nc, comps, label, numids, ids, func_t, ctx, locX));
11099566063dSJacob Faibussowitsch         PetscCall(DMPlexLabelClearCells(dm, label));
11109371c9d4SSatish Balay       } break;
11119371c9d4SSatish Balay       case DM_BC_ESSENTIAL_FIELD: {
111245480ffeSMatthew G. Knepley         PetscPointFunc func_t = (PetscPointFunc)bvfunc;
111345480ffeSMatthew G. Knepley 
11149566063dSJacob Faibussowitsch         PetscCall(DMPlexLabelAddCells(dm, label));
11159566063dSJacob Faibussowitsch         PetscCall(DMPlexInsertBoundaryValuesEssentialField(dm, time, locX, field, Nc, comps, label, numids, ids, func_t, ctx, locX));
11169566063dSJacob Faibussowitsch         PetscCall(DMPlexLabelClearCells(dm, label));
11179371c9d4SSatish Balay       } break;
1118d71ae5a4SJacob Faibussowitsch       default:
1119d71ae5a4SJacob Faibussowitsch         break;
112056cf3b9cSMatthew G. Knepley       }
112163a3b9bcSJacob Faibussowitsch     } else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, field);
112256cf3b9cSMatthew G. Knepley   }
11233ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
112456cf3b9cSMatthew G. Knepley }
112556cf3b9cSMatthew G. Knepley 
1126f1d73a7aSMatthew G. Knepley /*@
1127f1d73a7aSMatthew G. Knepley   DMPlexInsertBoundaryValues - Puts coefficients which represent boundary values into the local solution vector
1128f1d73a7aSMatthew G. Knepley 
1129ed808b8fSJed Brown   Not Collective
1130ed808b8fSJed Brown 
1131f1d73a7aSMatthew G. Knepley   Input Parameters:
1132a1cb98faSBarry Smith + dm - The `DM`
1133f1d73a7aSMatthew G. Knepley . insertEssential - Should I insert essential (e.g. Dirichlet) or inessential (e.g. Neumann) boundary conditions
1134f1d73a7aSMatthew G. Knepley . time - The time
1135f1d73a7aSMatthew G. Knepley . faceGeomFVM - Face geometry data for FV discretizations
1136f1d73a7aSMatthew G. Knepley . cellGeomFVM - Cell geometry data for FV discretizations
1137f1d73a7aSMatthew G. Knepley - gradFVM - Gradient reconstruction data for FV discretizations
1138f1d73a7aSMatthew G. Knepley 
1139f1d73a7aSMatthew G. Knepley   Output Parameters:
1140f1d73a7aSMatthew G. Knepley . locX - Solution updated with boundary values
1141f1d73a7aSMatthew G. Knepley 
1142ed808b8fSJed Brown   Level: intermediate
1143f1d73a7aSMatthew G. Knepley 
1144a1cb98faSBarry Smith .seealso: [](chapter_unstructured), `DM`, `DMPLEX`, `DMProjectFunctionLabelLocal()`, `DMAddBoundary()`
1145f1d73a7aSMatthew G. Knepley @*/
1146d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexInsertBoundaryValues(DM dm, PetscBool insertEssential, Vec locX, PetscReal time, Vec faceGeomFVM, Vec cellGeomFVM, Vec gradFVM)
1147d71ae5a4SJacob Faibussowitsch {
1148f1d73a7aSMatthew G. Knepley   PetscFunctionBegin;
1149f1d73a7aSMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
1150064a246eSJacob Faibussowitsch   PetscValidHeaderSpecific(locX, VEC_CLASSID, 3);
1151ad540459SPierre Jolivet   if (faceGeomFVM) PetscValidHeaderSpecific(faceGeomFVM, VEC_CLASSID, 5);
1152ad540459SPierre Jolivet   if (cellGeomFVM) PetscValidHeaderSpecific(cellGeomFVM, VEC_CLASSID, 6);
1153ad540459SPierre Jolivet   if (gradFVM) PetscValidHeaderSpecific(gradFVM, VEC_CLASSID, 7);
1154cac4c232SBarry Smith   PetscTryMethod(dm, "DMPlexInsertBoundaryValues_C", (DM, PetscBool, Vec, PetscReal, Vec, Vec, Vec), (dm, insertEssential, locX, time, faceGeomFVM, cellGeomFVM, gradFVM));
11553ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1156f1d73a7aSMatthew G. Knepley }
1157f1d73a7aSMatthew G. Knepley 
115856cf3b9cSMatthew G. Knepley /*@
1159a5b23f4aSJose E. Roman   DMPlexInsertTimeDerivativeBoundaryValues - Puts coefficients which represent boundary values of the time derivative into the local solution vector
116056cf3b9cSMatthew G. Knepley 
116156cf3b9cSMatthew G. Knepley   Input Parameters:
1162a1cb98faSBarry Smith + dm - The `DM`
116356cf3b9cSMatthew G. Knepley . insertEssential - Should I insert essential (e.g. Dirichlet) or inessential (e.g. Neumann) boundary conditions
116456cf3b9cSMatthew G. Knepley . time - The time
116556cf3b9cSMatthew G. Knepley . faceGeomFVM - Face geometry data for FV discretizations
116656cf3b9cSMatthew G. Knepley . cellGeomFVM - Cell geometry data for FV discretizations
116756cf3b9cSMatthew G. Knepley - gradFVM - Gradient reconstruction data for FV discretizations
116856cf3b9cSMatthew G. Knepley 
116956cf3b9cSMatthew G. Knepley   Output Parameters:
117056cf3b9cSMatthew G. Knepley . locX_t - Solution updated with boundary values
117156cf3b9cSMatthew G. Knepley 
117256cf3b9cSMatthew G. Knepley   Level: developer
117356cf3b9cSMatthew G. Knepley 
1174a1cb98faSBarry Smith .seealso: [](chapter_unstructured), `DM`, `DMPLEX`, `DMProjectFunctionLabelLocal()`
117556cf3b9cSMatthew G. Knepley @*/
1176d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexInsertTimeDerivativeBoundaryValues(DM dm, PetscBool insertEssential, Vec locX_t, PetscReal time, Vec faceGeomFVM, Vec cellGeomFVM, Vec gradFVM)
1177d71ae5a4SJacob Faibussowitsch {
117856cf3b9cSMatthew G. Knepley   PetscFunctionBegin;
117956cf3b9cSMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
1180ad540459SPierre Jolivet   if (locX_t) PetscValidHeaderSpecific(locX_t, VEC_CLASSID, 3);
1181ad540459SPierre Jolivet   if (faceGeomFVM) PetscValidHeaderSpecific(faceGeomFVM, VEC_CLASSID, 5);
1182ad540459SPierre Jolivet   if (cellGeomFVM) PetscValidHeaderSpecific(cellGeomFVM, VEC_CLASSID, 6);
1183ad540459SPierre Jolivet   if (gradFVM) PetscValidHeaderSpecific(gradFVM, VEC_CLASSID, 7);
1184cac4c232SBarry Smith   PetscTryMethod(dm, "DMPlexInsertTimeDerviativeBoundaryValues_C", (DM, PetscBool, Vec, PetscReal, Vec, Vec, Vec), (dm, insertEssential, locX_t, time, faceGeomFVM, cellGeomFVM, gradFVM));
11853ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
118656cf3b9cSMatthew G. Knepley }
118756cf3b9cSMatthew G. Knepley 
1188d71ae5a4SJacob Faibussowitsch PetscErrorCode DMComputeL2Diff_Plex(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal[], PetscInt, PetscScalar *, void *), void **ctxs, Vec X, PetscReal *diff)
1189d71ae5a4SJacob Faibussowitsch {
1190574a98acSMatthew G. Knepley   Vec localX;
1191574a98acSMatthew G. Knepley 
1192574a98acSMatthew G. Knepley   PetscFunctionBegin;
11939566063dSJacob Faibussowitsch   PetscCall(DMGetLocalVector(dm, &localX));
11949566063dSJacob Faibussowitsch   PetscCall(DMPlexInsertBoundaryValues(dm, PETSC_TRUE, localX, time, NULL, NULL, NULL));
11959566063dSJacob Faibussowitsch   PetscCall(DMGlobalToLocalBegin(dm, X, INSERT_VALUES, localX));
11969566063dSJacob Faibussowitsch   PetscCall(DMGlobalToLocalEnd(dm, X, INSERT_VALUES, localX));
11979566063dSJacob Faibussowitsch   PetscCall(DMPlexComputeL2DiffLocal(dm, time, funcs, ctxs, localX, diff));
11989566063dSJacob Faibussowitsch   PetscCall(DMRestoreLocalVector(dm, &localX));
11993ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1200574a98acSMatthew G. Knepley }
1201574a98acSMatthew G. Knepley 
1202574a98acSMatthew G. Knepley /*@C
1203ca3d3a14SMatthew G. Knepley   DMComputeL2DiffLocal - This function computes the L_2 difference between a function u and an FEM interpolant solution u_h.
1204574a98acSMatthew G. Knepley 
1205d083f849SBarry Smith   Collective on dm
1206c0f8e1fdSMatthew G. Knepley 
1207574a98acSMatthew G. Knepley   Input Parameters:
1208a1cb98faSBarry Smith + dm     - The `DM`
1209574a98acSMatthew G. Knepley . time   - The time
1210574a98acSMatthew G. Knepley . funcs  - The functions to evaluate for each field component
1211574a98acSMatthew G. Knepley . ctxs   - Optional array of contexts to pass to each function, or NULL.
1212574a98acSMatthew G. Knepley - localX - The coefficient vector u_h, a local vector
1213574a98acSMatthew G. Knepley 
1214574a98acSMatthew G. Knepley   Output Parameter:
1215574a98acSMatthew G. Knepley . diff - The diff ||u - u_h||_2
1216574a98acSMatthew G. Knepley 
1217574a98acSMatthew G. Knepley   Level: developer
1218574a98acSMatthew G. Knepley 
1219a1cb98faSBarry Smith .seealso: [](chapter_unstructured), `DM`, `DMPLEX`, `DMProjectFunction()`, `DMComputeL2FieldDiff()`, `DMComputeL2GradientDiff()`
1220574a98acSMatthew G. Knepley @*/
1221d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeL2DiffLocal(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal[], PetscInt, PetscScalar *, void *), void **ctxs, Vec localX, PetscReal *diff)
1222d71ae5a4SJacob Faibussowitsch {
12230f09c10fSMatthew G. Knepley   const PetscInt   debug = ((DM_Plex *)dm->data)->printL2;
1224ca3d3a14SMatthew G. Knepley   DM               tdm;
1225ca3d3a14SMatthew G. Knepley   Vec              tv;
1226cb1e1211SMatthew G Knepley   PetscSection     section;
1227c5bbbd5bSMatthew G. Knepley   PetscQuadrature  quad;
12284bee2e38SMatthew G. Knepley   PetscFEGeom      fegeom;
122915496722SMatthew G. Knepley   PetscScalar     *funcVal, *interpolant;
12304bee2e38SMatthew G. Knepley   PetscReal       *coords, *gcoords;
1231cb1e1211SMatthew G Knepley   PetscReal        localDiff = 0.0;
12327318780aSToby Isaac   const PetscReal *quadWeights;
1233412e9a14SMatthew G. Knepley   PetscInt         dim, coordDim, numFields, numComponents = 0, qNc, Nq, cellHeight, cStart, cEnd, c, field, fieldOffset;
1234ca3d3a14SMatthew G. Knepley   PetscBool        transform;
1235cb1e1211SMatthew G Knepley 
1236cb1e1211SMatthew G Knepley   PetscFunctionBegin;
12379566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dm, &dim));
12389566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateDim(dm, &coordDim));
12392a4e142eSMatthew G. Knepley   fegeom.dimEmbed = coordDim;
12409566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dm, &section));
12419566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetNumFields(section, &numFields));
12429566063dSJacob Faibussowitsch   PetscCall(DMGetBasisTransformDM_Internal(dm, &tdm));
12439566063dSJacob Faibussowitsch   PetscCall(DMGetBasisTransformVec_Internal(dm, &tv));
12449566063dSJacob Faibussowitsch   PetscCall(DMHasBasisTransform(dm, &transform));
1245*eae3dc7dSJacob Faibussowitsch   PetscCheck(numFields, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of fields is zero!");
1246cb1e1211SMatthew G Knepley   for (field = 0; field < numFields; ++field) {
124715496722SMatthew G. Knepley     PetscObject  obj;
124815496722SMatthew G. Knepley     PetscClassId id;
1249c5bbbd5bSMatthew G. Knepley     PetscInt     Nc;
1250c5bbbd5bSMatthew G. Knepley 
12519566063dSJacob Faibussowitsch     PetscCall(DMGetField(dm, field, NULL, &obj));
12529566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetClassId(obj, &id));
125315496722SMatthew G. Knepley     if (id == PETSCFE_CLASSID) {
125415496722SMatthew G. Knepley       PetscFE fe = (PetscFE)obj;
125515496722SMatthew G. Knepley 
12569566063dSJacob Faibussowitsch       PetscCall(PetscFEGetQuadrature(fe, &quad));
12579566063dSJacob Faibussowitsch       PetscCall(PetscFEGetNumComponents(fe, &Nc));
125815496722SMatthew G. Knepley     } else if (id == PETSCFV_CLASSID) {
125915496722SMatthew G. Knepley       PetscFV fv = (PetscFV)obj;
126015496722SMatthew G. Knepley 
12619566063dSJacob Faibussowitsch       PetscCall(PetscFVGetQuadrature(fv, &quad));
12629566063dSJacob Faibussowitsch       PetscCall(PetscFVGetNumComponents(fv, &Nc));
126363a3b9bcSJacob Faibussowitsch     } else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, field);
1264c5bbbd5bSMatthew G. Knepley     numComponents += Nc;
1265cb1e1211SMatthew G Knepley   }
12669566063dSJacob Faibussowitsch   PetscCall(PetscQuadratureGetData(quad, NULL, &qNc, &Nq, NULL, &quadWeights));
126763a3b9bcSJacob Faibussowitsch   PetscCheck(!(qNc != 1) || !(qNc != numComponents), PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_SIZ, "Quadrature components %" PetscInt_FMT " != %" PetscInt_FMT " field components", qNc, numComponents);
1268c9cb6370SYANG Zongze   PetscCall(PetscMalloc6(numComponents, &funcVal, numComponents, &interpolant, coordDim * (Nq + 1), &coords, Nq, &fegeom.detJ, coordDim * coordDim * Nq, &fegeom.J, coordDim * coordDim * Nq, &fegeom.invJ));
12699566063dSJacob Faibussowitsch   PetscCall(DMPlexGetVTKCellHeight(dm, &cellHeight));
12709566063dSJacob Faibussowitsch   PetscCall(DMPlexGetSimplexOrBoxCells(dm, cellHeight, &cStart, &cEnd));
1271cb1e1211SMatthew G Knepley   for (c = cStart; c < cEnd; ++c) {
1272a1e44745SMatthew G. Knepley     PetscScalar *x        = NULL;
1273cb1e1211SMatthew G Knepley     PetscReal    elemDiff = 0.0;
12749c3cf19fSMatthew G. Knepley     PetscInt     qc       = 0;
1275cb1e1211SMatthew G Knepley 
12769566063dSJacob Faibussowitsch     PetscCall(DMPlexComputeCellGeometryFEM(dm, c, quad, coords, fegeom.J, fegeom.invJ, fegeom.detJ));
12779566063dSJacob Faibussowitsch     PetscCall(DMPlexVecGetClosure(dm, NULL, localX, c, NULL, &x));
1278cb1e1211SMatthew G Knepley 
127915496722SMatthew G. Knepley     for (field = 0, fieldOffset = 0; field < numFields; ++field) {
128015496722SMatthew G. Knepley       PetscObject  obj;
128115496722SMatthew G. Knepley       PetscClassId id;
1282c110b1eeSGeoffrey Irving       void *const  ctx = ctxs ? ctxs[field] : NULL;
128315496722SMatthew G. Knepley       PetscInt     Nb, Nc, q, fc;
1284cb1e1211SMatthew G Knepley 
12859566063dSJacob Faibussowitsch       PetscCall(DMGetField(dm, field, NULL, &obj));
12869566063dSJacob Faibussowitsch       PetscCall(PetscObjectGetClassId(obj, &id));
12879371c9d4SSatish Balay       if (id == PETSCFE_CLASSID) {
12889371c9d4SSatish Balay         PetscCall(PetscFEGetNumComponents((PetscFE)obj, &Nc));
12899371c9d4SSatish Balay         PetscCall(PetscFEGetDimension((PetscFE)obj, &Nb));
12909371c9d4SSatish Balay       } else if (id == PETSCFV_CLASSID) {
12919371c9d4SSatish Balay         PetscCall(PetscFVGetNumComponents((PetscFV)obj, &Nc));
12929371c9d4SSatish Balay         Nb = 1;
12939371c9d4SSatish Balay       } else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, field);
1294cb1e1211SMatthew G Knepley       if (debug) {
1295cb1e1211SMatthew G Knepley         char title[1024];
129663a3b9bcSJacob Faibussowitsch         PetscCall(PetscSNPrintf(title, 1023, "Solution for Field %" PetscInt_FMT, field));
12979566063dSJacob Faibussowitsch         PetscCall(DMPrintCellVector(c, title, Nb, &x[fieldOffset]));
1298cb1e1211SMatthew G Knepley       }
12997318780aSToby Isaac       for (q = 0; q < Nq; ++q) {
13002a4e142eSMatthew G. Knepley         PetscFEGeom    qgeom;
1301d0609cedSBarry Smith         PetscErrorCode ierr;
13022a4e142eSMatthew G. Knepley 
13032a4e142eSMatthew G. Knepley         qgeom.dimEmbed = fegeom.dimEmbed;
13042a4e142eSMatthew G. Knepley         qgeom.J        = &fegeom.J[q * coordDim * coordDim];
13052a4e142eSMatthew G. Knepley         qgeom.invJ     = &fegeom.invJ[q * coordDim * coordDim];
13062a4e142eSMatthew G. Knepley         qgeom.detJ     = &fegeom.detJ[q];
130763a3b9bcSJacob Faibussowitsch         PetscCheck(fegeom.detJ[q] > 0.0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Invalid determinant %g for element %" PetscInt_FMT ", point %" PetscInt_FMT, (double)fegeom.detJ[q], c, q);
1308d3a7d86cSMatthew G. Knepley         if (transform) {
1309d3a7d86cSMatthew G. Knepley           gcoords = &coords[coordDim * Nq];
13109566063dSJacob Faibussowitsch           PetscCall(DMPlexBasisTransformApplyReal_Internal(dm, &coords[coordDim * q], PETSC_TRUE, coordDim, &coords[coordDim * q], gcoords, dm->transformCtx));
1311d3a7d86cSMatthew G. Knepley         } else {
1312d3a7d86cSMatthew G. Knepley           gcoords = &coords[coordDim * q];
1313d3a7d86cSMatthew G. Knepley         }
13149566063dSJacob Faibussowitsch         PetscCall(PetscArrayzero(funcVal, Nc));
1315ca3d3a14SMatthew G. Knepley         ierr = (*funcs[field])(coordDim, time, gcoords, Nc, funcVal, ctx);
1316e735a8a9SMatthew G. Knepley         if (ierr) {
13179566063dSJacob Faibussowitsch           PetscCall(DMPlexVecRestoreClosure(dm, NULL, localX, c, NULL, &x));
13189566063dSJacob Faibussowitsch           PetscCall(DMRestoreLocalVector(dm, &localX));
13199566063dSJacob Faibussowitsch           PetscCall(PetscFree6(funcVal, interpolant, coords, fegeom.detJ, fegeom.J, fegeom.invJ));
1320e735a8a9SMatthew G. Knepley         }
13219566063dSJacob Faibussowitsch         if (transform) PetscCall(DMPlexBasisTransformApply_Internal(dm, &coords[coordDim * q], PETSC_FALSE, Nc, funcVal, funcVal, dm->transformCtx));
13229566063dSJacob Faibussowitsch         if (id == PETSCFE_CLASSID) PetscCall(PetscFEInterpolate_Static((PetscFE)obj, &x[fieldOffset], &qgeom, q, interpolant));
13239566063dSJacob Faibussowitsch         else if (id == PETSCFV_CLASSID) PetscCall(PetscFVInterpolate_Static((PetscFV)obj, &x[fieldOffset], q, interpolant));
13242df84da0SMatthew G. Knepley         else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, field);
132515496722SMatthew G. Knepley         for (fc = 0; fc < Nc; ++fc) {
1326beaa55a6SMatthew G. Knepley           const PetscReal wt = quadWeights[q * qNc + (qNc == 1 ? 0 : qc + fc)];
13279371c9d4SSatish Balay           if (debug)
13289371c9d4SSatish Balay             PetscCall(PetscPrintf(PETSC_COMM_SELF, "    elem %" PetscInt_FMT " field %" PetscInt_FMT ",%" PetscInt_FMT " point %g %g %g diff %g (%g, %g)\n", c, field, fc, (double)(coordDim > 0 ? coords[coordDim * q] : 0.), (double)(coordDim > 1 ? coords[coordDim * q + 1] : 0.), (double)(coordDim > 2 ? coords[coordDim * q + 2] : 0.),
13299371c9d4SSatish Balay                                   (double)(PetscSqr(PetscRealPart(interpolant[fc] - funcVal[fc])) * wt * fegeom.detJ[q]), (double)PetscRealPart(interpolant[fc]), (double)PetscRealPart(funcVal[fc])));
13304bee2e38SMatthew G. Knepley           elemDiff += PetscSqr(PetscRealPart(interpolant[fc] - funcVal[fc])) * wt * fegeom.detJ[q];
1331cb1e1211SMatthew G Knepley         }
1332cb1e1211SMatthew G Knepley       }
13339c3cf19fSMatthew G. Knepley       fieldOffset += Nb;
1334beaa55a6SMatthew G. Knepley       qc += Nc;
1335cb1e1211SMatthew G Knepley     }
13369566063dSJacob Faibussowitsch     PetscCall(DMPlexVecRestoreClosure(dm, NULL, localX, c, NULL, &x));
13379566063dSJacob Faibussowitsch     if (debug) PetscCall(PetscPrintf(PETSC_COMM_SELF, "  elem %" PetscInt_FMT " diff %g\n", c, (double)elemDiff));
1338cb1e1211SMatthew G Knepley     localDiff += elemDiff;
1339cb1e1211SMatthew G Knepley   }
13409566063dSJacob Faibussowitsch   PetscCall(PetscFree6(funcVal, interpolant, coords, fegeom.detJ, fegeom.J, fegeom.invJ));
13411c2dc1cbSBarry Smith   PetscCall(MPIU_Allreduce(&localDiff, diff, 1, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)dm)));
1342cb1e1211SMatthew G Knepley   *diff = PetscSqrtReal(*diff);
13433ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1344cb1e1211SMatthew G Knepley }
1345cb1e1211SMatthew G Knepley 
1346d71ae5a4SJacob Faibussowitsch PetscErrorCode DMComputeL2GradientDiff_Plex(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal[], const PetscReal[], PetscInt, PetscScalar *, void *), void **ctxs, Vec X, const PetscReal n[], PetscReal *diff)
1347d71ae5a4SJacob Faibussowitsch {
13480f09c10fSMatthew G. Knepley   const PetscInt   debug = ((DM_Plex *)dm->data)->printL2;
1349ca3d3a14SMatthew G. Knepley   DM               tdm;
1350cb1e1211SMatthew G Knepley   PetscSection     section;
135140e14135SMatthew G. Knepley   PetscQuadrature  quad;
1352ca3d3a14SMatthew G. Knepley   Vec              localX, tv;
13539c3cf19fSMatthew G. Knepley   PetscScalar     *funcVal, *interpolant;
13542a4e142eSMatthew G. Knepley   const PetscReal *quadWeights;
13554bee2e38SMatthew G. Knepley   PetscFEGeom      fegeom;
13564bee2e38SMatthew G. Knepley   PetscReal       *coords, *gcoords;
135740e14135SMatthew G. Knepley   PetscReal        localDiff = 0.0;
1358485ad865SMatthew G. Knepley   PetscInt         dim, coordDim, qNc = 0, Nq = 0, numFields, numComponents = 0, cStart, cEnd, c, field, fieldOffset;
1359ca3d3a14SMatthew G. Knepley   PetscBool        transform;
1360cb1e1211SMatthew G Knepley 
1361cb1e1211SMatthew G Knepley   PetscFunctionBegin;
13629566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dm, &dim));
13639566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateDim(dm, &coordDim));
13644bee2e38SMatthew G. Knepley   fegeom.dimEmbed = coordDim;
13659566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dm, &section));
13669566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetNumFields(section, &numFields));
13679566063dSJacob Faibussowitsch   PetscCall(DMGetLocalVector(dm, &localX));
13689566063dSJacob Faibussowitsch   PetscCall(DMGlobalToLocalBegin(dm, X, INSERT_VALUES, localX));
13699566063dSJacob Faibussowitsch   PetscCall(DMGlobalToLocalEnd(dm, X, INSERT_VALUES, localX));
13709566063dSJacob Faibussowitsch   PetscCall(DMGetBasisTransformDM_Internal(dm, &tdm));
13719566063dSJacob Faibussowitsch   PetscCall(DMGetBasisTransformVec_Internal(dm, &tv));
13729566063dSJacob Faibussowitsch   PetscCall(DMHasBasisTransform(dm, &transform));
1373652b88e8SMatthew G. Knepley   for (field = 0; field < numFields; ++field) {
13740f2d7e86SMatthew G. Knepley     PetscFE  fe;
137540e14135SMatthew G. Knepley     PetscInt Nc;
1376652b88e8SMatthew G. Knepley 
13779566063dSJacob Faibussowitsch     PetscCall(DMGetField(dm, field, NULL, (PetscObject *)&fe));
13789566063dSJacob Faibussowitsch     PetscCall(PetscFEGetQuadrature(fe, &quad));
13799566063dSJacob Faibussowitsch     PetscCall(PetscFEGetNumComponents(fe, &Nc));
138040e14135SMatthew G. Knepley     numComponents += Nc;
1381652b88e8SMatthew G. Knepley   }
13829566063dSJacob Faibussowitsch   PetscCall(PetscQuadratureGetData(quad, NULL, &qNc, &Nq, NULL, &quadWeights));
138363a3b9bcSJacob Faibussowitsch   PetscCheck(!(qNc != 1) || !(qNc != numComponents), PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_SIZ, "Quadrature components %" PetscInt_FMT " != %" PetscInt_FMT " field components", qNc, numComponents);
13849566063dSJacob Faibussowitsch   /* PetscCall(DMProjectFunctionLocal(dm, fe, funcs, INSERT_BC_VALUES, localX)); */
1385c9cb6370SYANG Zongze   PetscCall(PetscMalloc6(numComponents, &funcVal, coordDim * (Nq + 1), &coords, coordDim * coordDim * Nq, &fegeom.J, coordDim * coordDim * Nq, &fegeom.invJ, numComponents * coordDim, &interpolant, Nq, &fegeom.detJ));
13869566063dSJacob Faibussowitsch   PetscCall(DMPlexGetSimplexOrBoxCells(dm, 0, &cStart, &cEnd));
138740e14135SMatthew G. Knepley   for (c = cStart; c < cEnd; ++c) {
138840e14135SMatthew G. Knepley     PetscScalar *x        = NULL;
138940e14135SMatthew G. Knepley     PetscReal    elemDiff = 0.0;
13909c3cf19fSMatthew G. Knepley     PetscInt     qc       = 0;
1391652b88e8SMatthew G. Knepley 
13929566063dSJacob Faibussowitsch     PetscCall(DMPlexComputeCellGeometryFEM(dm, c, quad, coords, fegeom.J, fegeom.invJ, fegeom.detJ));
13939566063dSJacob Faibussowitsch     PetscCall(DMPlexVecGetClosure(dm, NULL, localX, c, NULL, &x));
139440e14135SMatthew G. Knepley 
13959c3cf19fSMatthew G. Knepley     for (field = 0, fieldOffset = 0; field < numFields; ++field) {
13960f2d7e86SMatthew G. Knepley       PetscFE     fe;
139751259fa3SMatthew G. Knepley       void *const ctx = ctxs ? ctxs[field] : NULL;
13989c3cf19fSMatthew G. Knepley       PetscInt    Nb, Nc, q, fc;
139940e14135SMatthew G. Knepley 
14009566063dSJacob Faibussowitsch       PetscCall(DMGetField(dm, field, NULL, (PetscObject *)&fe));
14019566063dSJacob Faibussowitsch       PetscCall(PetscFEGetDimension(fe, &Nb));
14029566063dSJacob Faibussowitsch       PetscCall(PetscFEGetNumComponents(fe, &Nc));
140340e14135SMatthew G. Knepley       if (debug) {
140440e14135SMatthew G. Knepley         char title[1024];
14059566063dSJacob Faibussowitsch         PetscCall(PetscSNPrintf(title, 1023, "Solution for Field %" PetscInt_FMT, field));
14069566063dSJacob Faibussowitsch         PetscCall(DMPrintCellVector(c, title, Nb, &x[fieldOffset]));
1407652b88e8SMatthew G. Knepley       }
14089c3cf19fSMatthew G. Knepley       for (q = 0; q < Nq; ++q) {
14092a4e142eSMatthew G. Knepley         PetscFEGeom    qgeom;
1410d0609cedSBarry Smith         PetscErrorCode ierr;
14112a4e142eSMatthew G. Knepley 
14122a4e142eSMatthew G. Knepley         qgeom.dimEmbed = fegeom.dimEmbed;
14132a4e142eSMatthew G. Knepley         qgeom.J        = &fegeom.J[q * coordDim * coordDim];
14142a4e142eSMatthew G. Knepley         qgeom.invJ     = &fegeom.invJ[q * coordDim * coordDim];
14152a4e142eSMatthew G. Knepley         qgeom.detJ     = &fegeom.detJ[q];
14162df84da0SMatthew G. Knepley         PetscCheck(fegeom.detJ[q] > 0.0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Invalid determinant %g for element %" PetscInt_FMT ", quadrature points %" PetscInt_FMT, (double)fegeom.detJ[q], c, q);
1417d3a7d86cSMatthew G. Knepley         if (transform) {
1418d3a7d86cSMatthew G. Knepley           gcoords = &coords[coordDim * Nq];
14199566063dSJacob Faibussowitsch           PetscCall(DMPlexBasisTransformApplyReal_Internal(dm, &coords[coordDim * q], PETSC_TRUE, coordDim, &coords[coordDim * q], gcoords, dm->transformCtx));
1420d3a7d86cSMatthew G. Knepley         } else {
1421d3a7d86cSMatthew G. Knepley           gcoords = &coords[coordDim * q];
1422d3a7d86cSMatthew G. Knepley         }
14239566063dSJacob Faibussowitsch         PetscCall(PetscArrayzero(funcVal, Nc));
14244bee2e38SMatthew G. Knepley         ierr = (*funcs[field])(coordDim, time, gcoords, n, Nc, funcVal, ctx);
1425e735a8a9SMatthew G. Knepley         if (ierr) {
14269566063dSJacob Faibussowitsch           PetscCall(DMPlexVecRestoreClosure(dm, NULL, localX, c, NULL, &x));
14279566063dSJacob Faibussowitsch           PetscCall(DMRestoreLocalVector(dm, &localX));
14289566063dSJacob Faibussowitsch           PetscCall(PetscFree6(funcVal, coords, fegeom.J, fegeom.invJ, interpolant, fegeom.detJ));
1429e735a8a9SMatthew G. Knepley         }
14309566063dSJacob Faibussowitsch         if (transform) PetscCall(DMPlexBasisTransformApply_Internal(dm, &coords[coordDim * q], PETSC_FALSE, Nc, funcVal, funcVal, dm->transformCtx));
14319566063dSJacob Faibussowitsch         PetscCall(PetscFEInterpolateGradient_Static(fe, 1, &x[fieldOffset], &qgeom, q, interpolant));
14324bee2e38SMatthew G. Knepley         /* Overwrite with the dot product if the normal is given */
14334bee2e38SMatthew G. Knepley         if (n) {
14344bee2e38SMatthew G. Knepley           for (fc = 0; fc < Nc; ++fc) {
14354bee2e38SMatthew G. Knepley             PetscScalar sum = 0.0;
14364bee2e38SMatthew G. Knepley             PetscInt    d;
14374bee2e38SMatthew G. Knepley             for (d = 0; d < dim; ++d) sum += interpolant[fc * dim + d] * n[d];
14384bee2e38SMatthew G. Knepley             interpolant[fc] = sum;
14394bee2e38SMatthew G. Knepley           }
14404bee2e38SMatthew G. Knepley         }
14419c3cf19fSMatthew G. Knepley         for (fc = 0; fc < Nc; ++fc) {
1442beaa55a6SMatthew G. Knepley           const PetscReal wt = quadWeights[q * qNc + (qNc == 1 ? 0 : qc + fc)];
144363a3b9bcSJacob Faibussowitsch           if (debug) PetscCall(PetscPrintf(PETSC_COMM_SELF, "    elem %" PetscInt_FMT " fieldDer %" PetscInt_FMT ",%" PetscInt_FMT " diff %g\n", c, field, fc, (double)(PetscSqr(PetscRealPart(interpolant[fc] - funcVal[fc])) * wt * fegeom.detJ[q])));
14444bee2e38SMatthew G. Knepley           elemDiff += PetscSqr(PetscRealPart(interpolant[fc] - funcVal[fc])) * wt * fegeom.detJ[q];
144540e14135SMatthew G. Knepley         }
144640e14135SMatthew G. Knepley       }
14479c3cf19fSMatthew G. Knepley       fieldOffset += Nb;
14489c3cf19fSMatthew G. Knepley       qc += Nc;
144940e14135SMatthew G. Knepley     }
14509566063dSJacob Faibussowitsch     PetscCall(DMPlexVecRestoreClosure(dm, NULL, localX, c, NULL, &x));
145163a3b9bcSJacob Faibussowitsch     if (debug) PetscCall(PetscPrintf(PETSC_COMM_SELF, "  elem %" PetscInt_FMT " diff %g\n", c, (double)elemDiff));
145240e14135SMatthew G. Knepley     localDiff += elemDiff;
145340e14135SMatthew G. Knepley   }
14549566063dSJacob Faibussowitsch   PetscCall(PetscFree6(funcVal, coords, fegeom.J, fegeom.invJ, interpolant, fegeom.detJ));
14559566063dSJacob Faibussowitsch   PetscCall(DMRestoreLocalVector(dm, &localX));
14561c2dc1cbSBarry Smith   PetscCall(MPIU_Allreduce(&localDiff, diff, 1, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)dm)));
145740e14135SMatthew G. Knepley   *diff = PetscSqrtReal(*diff);
14583ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1459cb1e1211SMatthew G Knepley }
1460cb1e1211SMatthew G Knepley 
1461d71ae5a4SJacob Faibussowitsch PetscErrorCode DMComputeL2FieldDiff_Plex(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal[], PetscInt, PetscScalar *, void *), void **ctxs, Vec X, PetscReal *diff)
1462d71ae5a4SJacob Faibussowitsch {
14630f09c10fSMatthew G. Knepley   const PetscInt debug = ((DM_Plex *)dm->data)->printL2;
1464ca3d3a14SMatthew G. Knepley   DM             tdm;
1465083401c6SMatthew G. Knepley   DMLabel        depthLabel;
146673d901b8SMatthew G. Knepley   PetscSection   section;
1467ca3d3a14SMatthew G. Knepley   Vec            localX, tv;
146873d901b8SMatthew G. Knepley   PetscReal     *localDiff;
1469083401c6SMatthew G. Knepley   PetscInt       dim, depth, dE, Nf, f, Nds, s;
1470ca3d3a14SMatthew G. Knepley   PetscBool      transform;
147173d901b8SMatthew G. Knepley 
147273d901b8SMatthew G. Knepley   PetscFunctionBegin;
14739566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dm, &dim));
14749566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateDim(dm, &dE));
14759566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dm, &section));
14769566063dSJacob Faibussowitsch   PetscCall(DMGetLocalVector(dm, &localX));
14779566063dSJacob Faibussowitsch   PetscCall(DMGetBasisTransformDM_Internal(dm, &tdm));
14789566063dSJacob Faibussowitsch   PetscCall(DMGetBasisTransformVec_Internal(dm, &tv));
14799566063dSJacob Faibussowitsch   PetscCall(DMHasBasisTransform(dm, &transform));
14809566063dSJacob Faibussowitsch   PetscCall(DMGetNumFields(dm, &Nf));
14819566063dSJacob Faibussowitsch   PetscCall(DMPlexGetDepthLabel(dm, &depthLabel));
14829566063dSJacob Faibussowitsch   PetscCall(DMLabelGetNumValues(depthLabel, &depth));
1483083401c6SMatthew G. Knepley 
14849566063dSJacob Faibussowitsch   PetscCall(VecSet(localX, 0.0));
14859566063dSJacob Faibussowitsch   PetscCall(DMGlobalToLocalBegin(dm, X, INSERT_VALUES, localX));
14869566063dSJacob Faibussowitsch   PetscCall(DMGlobalToLocalEnd(dm, X, INSERT_VALUES, localX));
14879566063dSJacob Faibussowitsch   PetscCall(DMProjectFunctionLocal(dm, time, funcs, ctxs, INSERT_BC_VALUES, localX));
14889566063dSJacob Faibussowitsch   PetscCall(DMGetNumDS(dm, &Nds));
14899566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(Nf, &localDiff));
1490083401c6SMatthew G. Knepley   for (s = 0; s < Nds; ++s) {
1491083401c6SMatthew G. Knepley     PetscDS          ds;
1492083401c6SMatthew G. Knepley     DMLabel          label;
1493083401c6SMatthew G. Knepley     IS               fieldIS, pointIS;
1494083401c6SMatthew G. Knepley     const PetscInt  *fields, *points = NULL;
1495083401c6SMatthew G. Knepley     PetscQuadrature  quad;
1496083401c6SMatthew G. Knepley     const PetscReal *quadPoints, *quadWeights;
1497083401c6SMatthew G. Knepley     PetscFEGeom      fegeom;
1498083401c6SMatthew G. Knepley     PetscReal       *coords, *gcoords;
1499083401c6SMatthew G. Knepley     PetscScalar     *funcVal, *interpolant;
15005fedec97SMatthew G. Knepley     PetscBool        isCohesive;
1501083401c6SMatthew G. Knepley     PetscInt         qNc, Nq, totNc, cStart = 0, cEnd, c, dsNf;
150273d901b8SMatthew G. Knepley 
15039566063dSJacob Faibussowitsch     PetscCall(DMGetRegionNumDS(dm, s, &label, &fieldIS, &ds));
15049566063dSJacob Faibussowitsch     PetscCall(ISGetIndices(fieldIS, &fields));
15059566063dSJacob Faibussowitsch     PetscCall(PetscDSIsCohesive(ds, &isCohesive));
15069566063dSJacob Faibussowitsch     PetscCall(PetscDSGetNumFields(ds, &dsNf));
15079566063dSJacob Faibussowitsch     PetscCall(PetscDSGetTotalComponents(ds, &totNc));
15089566063dSJacob Faibussowitsch     PetscCall(PetscDSGetQuadrature(ds, &quad));
15099566063dSJacob Faibussowitsch     PetscCall(PetscQuadratureGetData(quad, NULL, &qNc, &Nq, &quadPoints, &quadWeights));
151063a3b9bcSJacob Faibussowitsch     PetscCheck(!(qNc != 1) || !(qNc != totNc), PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Quadrature components %" PetscInt_FMT " != %" PetscInt_FMT " field components", qNc, totNc);
15119566063dSJacob Faibussowitsch     PetscCall(PetscCalloc6(totNc, &funcVal, totNc, &interpolant, dE * (Nq + 1), &coords, Nq, &fegeom.detJ, dE * dE * Nq, &fegeom.J, dE * dE * Nq, &fegeom.invJ));
1512083401c6SMatthew G. Knepley     if (!label) {
15139566063dSJacob Faibussowitsch       PetscCall(DMPlexGetSimplexOrBoxCells(dm, 0, &cStart, &cEnd));
1514083401c6SMatthew G. Knepley     } else {
15159566063dSJacob Faibussowitsch       PetscCall(DMLabelGetStratumIS(label, 1, &pointIS));
15169566063dSJacob Faibussowitsch       PetscCall(ISGetLocalSize(pointIS, &cEnd));
15179566063dSJacob Faibussowitsch       PetscCall(ISGetIndices(pointIS, &points));
1518083401c6SMatthew G. Knepley     }
151973d901b8SMatthew G. Knepley     for (c = cStart; c < cEnd; ++c) {
1520083401c6SMatthew G. Knepley       const PetscInt  cell = points ? points[c] : c;
152173d901b8SMatthew G. Knepley       PetscScalar    *x    = NULL;
15225fedec97SMatthew G. Knepley       const PetscInt *cone;
15235fedec97SMatthew G. Knepley       PetscInt        qc = 0, fOff = 0, dep;
152473d901b8SMatthew G. Knepley 
15259566063dSJacob Faibussowitsch       PetscCall(DMLabelGetValue(depthLabel, cell, &dep));
1526083401c6SMatthew G. Knepley       if (dep != depth - 1) continue;
15275fedec97SMatthew G. Knepley       if (isCohesive) {
15289566063dSJacob Faibussowitsch         PetscCall(DMPlexGetCone(dm, cell, &cone));
15299566063dSJacob Faibussowitsch         PetscCall(DMPlexComputeCellGeometryFEM(dm, cone[0], quad, coords, fegeom.J, fegeom.invJ, fegeom.detJ));
153096959cd1SMatthew G. Knepley       } else {
15319566063dSJacob Faibussowitsch         PetscCall(DMPlexComputeCellGeometryFEM(dm, cell, quad, coords, fegeom.J, fegeom.invJ, fegeom.detJ));
153296959cd1SMatthew G. Knepley       }
15339566063dSJacob Faibussowitsch       PetscCall(DMPlexVecGetClosure(dm, NULL, localX, cell, NULL, &x));
15345fedec97SMatthew G. Knepley       for (f = 0; f < dsNf; ++f) {
153515496722SMatthew G. Knepley         PetscObject  obj;
153615496722SMatthew G. Knepley         PetscClassId id;
1537083401c6SMatthew G. Knepley         void *const  ctx = ctxs ? ctxs[fields[f]] : NULL;
153815496722SMatthew G. Knepley         PetscInt     Nb, Nc, q, fc;
153915496722SMatthew G. Knepley         PetscReal    elemDiff = 0.0;
15405fedec97SMatthew G. Knepley         PetscBool    cohesive;
154115496722SMatthew G. Knepley 
15429566063dSJacob Faibussowitsch         PetscCall(PetscDSGetCohesive(ds, f, &cohesive));
15435fedec97SMatthew G. Knepley         if (isCohesive && !cohesive) continue;
15449566063dSJacob Faibussowitsch         PetscCall(PetscDSGetDiscretization(ds, f, &obj));
15459566063dSJacob Faibussowitsch         PetscCall(PetscObjectGetClassId(obj, &id));
15469371c9d4SSatish Balay         if (id == PETSCFE_CLASSID) {
15479371c9d4SSatish Balay           PetscCall(PetscFEGetNumComponents((PetscFE)obj, &Nc));
15489371c9d4SSatish Balay           PetscCall(PetscFEGetDimension((PetscFE)obj, &Nb));
15499371c9d4SSatish Balay         } else if (id == PETSCFV_CLASSID) {
15509371c9d4SSatish Balay           PetscCall(PetscFVGetNumComponents((PetscFV)obj, &Nc));
15519371c9d4SSatish Balay           Nb = 1;
15529371c9d4SSatish Balay         } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, fields[f]);
155373d901b8SMatthew G. Knepley         if (debug) {
155473d901b8SMatthew G. Knepley           char title[1024];
155563a3b9bcSJacob Faibussowitsch           PetscCall(PetscSNPrintf(title, 1023, "Solution for Field %" PetscInt_FMT, fields[f]));
15569566063dSJacob Faibussowitsch           PetscCall(DMPrintCellVector(cell, title, Nb, &x[fOff]));
155773d901b8SMatthew G. Knepley         }
15587318780aSToby Isaac         for (q = 0; q < Nq; ++q) {
15592a4e142eSMatthew G. Knepley           PetscFEGeom    qgeom;
1560d0609cedSBarry Smith           PetscErrorCode ierr;
15612a4e142eSMatthew G. Knepley 
15622a4e142eSMatthew G. Knepley           qgeom.dimEmbed = fegeom.dimEmbed;
1563083401c6SMatthew G. Knepley           qgeom.J        = &fegeom.J[q * dE * dE];
1564083401c6SMatthew G. Knepley           qgeom.invJ     = &fegeom.invJ[q * dE * dE];
15652a4e142eSMatthew G. Knepley           qgeom.detJ     = &fegeom.detJ[q];
156663a3b9bcSJacob Faibussowitsch           PetscCheck(fegeom.detJ[q] > 0.0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Invalid determinant %g for cell %" PetscInt_FMT ", quadrature point %" PetscInt_FMT, (double)fegeom.detJ[q], cell, q);
1567d3a7d86cSMatthew G. Knepley           if (transform) {
1568083401c6SMatthew G. Knepley             gcoords = &coords[dE * Nq];
15699566063dSJacob Faibussowitsch             PetscCall(DMPlexBasisTransformApplyReal_Internal(dm, &coords[dE * q], PETSC_TRUE, dE, &coords[dE * q], gcoords, dm->transformCtx));
1570d3a7d86cSMatthew G. Knepley           } else {
1571083401c6SMatthew G. Knepley             gcoords = &coords[dE * q];
1572d3a7d86cSMatthew G. Knepley           }
15732df84da0SMatthew G. Knepley           for (fc = 0; fc < Nc; ++fc) funcVal[fc] = 0.;
1574083401c6SMatthew G. Knepley           ierr = (*funcs[fields[f]])(dE, time, gcoords, Nc, funcVal, ctx);
1575e735a8a9SMatthew G. Knepley           if (ierr) {
15769566063dSJacob Faibussowitsch             PetscCall(DMPlexVecRestoreClosure(dm, NULL, localX, cell, NULL, &x));
15779566063dSJacob Faibussowitsch             PetscCall(DMRestoreLocalVector(dm, &localX));
15789566063dSJacob Faibussowitsch             PetscCall(PetscFree6(funcVal, interpolant, coords, fegeom.detJ, fegeom.J, fegeom.invJ));
1579e735a8a9SMatthew G. Knepley           }
15809566063dSJacob Faibussowitsch           if (transform) PetscCall(DMPlexBasisTransformApply_Internal(dm, &coords[dE * q], PETSC_FALSE, Nc, funcVal, funcVal, dm->transformCtx));
158196959cd1SMatthew G. Knepley           /* Call once for each face, except for lagrange field */
15829566063dSJacob Faibussowitsch           if (id == PETSCFE_CLASSID) PetscCall(PetscFEInterpolate_Static((PetscFE)obj, &x[fOff], &qgeom, q, interpolant));
15839566063dSJacob Faibussowitsch           else if (id == PETSCFV_CLASSID) PetscCall(PetscFVInterpolate_Static((PetscFV)obj, &x[fOff], q, interpolant));
158463a3b9bcSJacob Faibussowitsch           else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, fields[f]);
158515496722SMatthew G. Knepley           for (fc = 0; fc < Nc; ++fc) {
1586beaa55a6SMatthew G. Knepley             const PetscReal wt = quadWeights[q * qNc + (qNc == 1 ? 0 : qc + fc)];
15879371c9d4SSatish Balay             if (debug)
15889371c9d4SSatish Balay               PetscCall(PetscPrintf(PETSC_COMM_SELF, "    cell %" PetscInt_FMT " field %" PetscInt_FMT ",%" PetscInt_FMT " point %g %g %g diff %g\n", cell, fields[f], fc, (double)(dE > 0 ? coords[dE * q] : 0.), (double)(dE > 1 ? coords[dE * q + 1] : 0.), (double)(dE > 2 ? coords[dE * q + 2] : 0.),
15899371c9d4SSatish Balay                                     (double)(PetscSqr(PetscRealPart(interpolant[fc] - funcVal[fc])) * wt * fegeom.detJ[q])));
15904bee2e38SMatthew G. Knepley             elemDiff += PetscSqr(PetscRealPart(interpolant[fc] - funcVal[fc])) * wt * fegeom.detJ[q];
159173d901b8SMatthew G. Knepley           }
159273d901b8SMatthew G. Knepley         }
1593083401c6SMatthew G. Knepley         fOff += Nb;
15949c3cf19fSMatthew G. Knepley         qc += Nc;
1595083401c6SMatthew G. Knepley         localDiff[fields[f]] += elemDiff;
159663a3b9bcSJacob Faibussowitsch         if (debug) PetscCall(PetscPrintf(PETSC_COMM_SELF, "  cell %" PetscInt_FMT " field %" PetscInt_FMT " cum diff %g\n", cell, fields[f], (double)localDiff[fields[f]]));
159773d901b8SMatthew G. Knepley       }
15989566063dSJacob Faibussowitsch       PetscCall(DMPlexVecRestoreClosure(dm, NULL, localX, cell, NULL, &x));
1599083401c6SMatthew G. Knepley     }
1600083401c6SMatthew G. Knepley     if (label) {
16019566063dSJacob Faibussowitsch       PetscCall(ISRestoreIndices(pointIS, &points));
16029566063dSJacob Faibussowitsch       PetscCall(ISDestroy(&pointIS));
1603083401c6SMatthew G. Knepley     }
16049566063dSJacob Faibussowitsch     PetscCall(ISRestoreIndices(fieldIS, &fields));
16059566063dSJacob Faibussowitsch     PetscCall(PetscFree6(funcVal, interpolant, coords, fegeom.detJ, fegeom.J, fegeom.invJ));
160673d901b8SMatthew G. Knepley   }
16079566063dSJacob Faibussowitsch   PetscCall(DMRestoreLocalVector(dm, &localX));
16081c2dc1cbSBarry Smith   PetscCall(MPIU_Allreduce(localDiff, diff, Nf, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)dm)));
16099566063dSJacob Faibussowitsch   PetscCall(PetscFree(localDiff));
1610083401c6SMatthew G. Knepley   for (f = 0; f < Nf; ++f) diff[f] = PetscSqrtReal(diff[f]);
16113ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
161273d901b8SMatthew G. Knepley }
161373d901b8SMatthew G. Knepley 
1614e729f68cSMatthew G. Knepley /*@C
1615e729f68cSMatthew G. Knepley   DMPlexComputeL2DiffVec - This function computes the cellwise L_2 difference between a function u and an FEM interpolant solution u_h, and stores it in a Vec.
1616e729f68cSMatthew G. Knepley 
1617d083f849SBarry Smith   Collective on dm
1618c0f8e1fdSMatthew G. Knepley 
1619e729f68cSMatthew G. Knepley   Input Parameters:
1620a1cb98faSBarry Smith + dm    - The `DM`
16210163fd50SMatthew G. Knepley . time  - The time
1622ca3eba1bSToby Isaac . funcs - The functions to evaluate for each field component: NULL means that component does not contribute to error calculation
1623e729f68cSMatthew G. Knepley . ctxs  - Optional array of contexts to pass to each function, or NULL.
1624e729f68cSMatthew G. Knepley - X     - The coefficient vector u_h
1625e729f68cSMatthew G. Knepley 
1626e729f68cSMatthew G. Knepley   Output Parameter:
1627e729f68cSMatthew G. Knepley . D - A Vec which holds the difference ||u - u_h||_2 for each cell
1628e729f68cSMatthew G. Knepley 
1629e729f68cSMatthew G. Knepley   Level: developer
1630e729f68cSMatthew G. Knepley 
1631a1cb98faSBarry Smith .seealso: [](chapter_unstructured), `DM`, `DMPLEX`, `DMProjectFunction()`, `DMComputeL2Diff()`, `DMPlexComputeL2FieldDiff()`, `DMComputeL2GradientDiff()`
1632e729f68cSMatthew G. Knepley @*/
1633d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeL2DiffVec(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal[], PetscInt, PetscScalar *, void *), void **ctxs, Vec X, Vec D)
1634d71ae5a4SJacob Faibussowitsch {
1635e729f68cSMatthew G. Knepley   PetscSection     section;
1636e729f68cSMatthew G. Knepley   PetscQuadrature  quad;
1637e729f68cSMatthew G. Knepley   Vec              localX;
16384bee2e38SMatthew G. Knepley   PetscFEGeom      fegeom;
1639e729f68cSMatthew G. Knepley   PetscScalar     *funcVal, *interpolant;
16404bee2e38SMatthew G. Knepley   PetscReal       *coords;
1641e729f68cSMatthew G. Knepley   const PetscReal *quadPoints, *quadWeights;
1642485ad865SMatthew G. Knepley   PetscInt         dim, coordDim, numFields, numComponents = 0, qNc, Nq, cStart, cEnd, c, field, fieldOffset;
1643e729f68cSMatthew G. Knepley 
1644e729f68cSMatthew G. Knepley   PetscFunctionBegin;
16459566063dSJacob Faibussowitsch   PetscCall(VecSet(D, 0.0));
16469566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dm, &dim));
16479566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateDim(dm, &coordDim));
16489566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dm, &section));
16499566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetNumFields(section, &numFields));
16509566063dSJacob Faibussowitsch   PetscCall(DMGetLocalVector(dm, &localX));
16519566063dSJacob Faibussowitsch   PetscCall(DMProjectFunctionLocal(dm, time, funcs, ctxs, INSERT_BC_VALUES, localX));
16529566063dSJacob Faibussowitsch   PetscCall(DMGlobalToLocalBegin(dm, X, INSERT_VALUES, localX));
16539566063dSJacob Faibussowitsch   PetscCall(DMGlobalToLocalEnd(dm, X, INSERT_VALUES, localX));
1654e729f68cSMatthew G. Knepley   for (field = 0; field < numFields; ++field) {
1655e729f68cSMatthew G. Knepley     PetscObject  obj;
1656e729f68cSMatthew G. Knepley     PetscClassId id;
1657e729f68cSMatthew G. Knepley     PetscInt     Nc;
1658e729f68cSMatthew G. Knepley 
16599566063dSJacob Faibussowitsch     PetscCall(DMGetField(dm, field, NULL, &obj));
16609566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetClassId(obj, &id));
1661e729f68cSMatthew G. Knepley     if (id == PETSCFE_CLASSID) {
1662e729f68cSMatthew G. Knepley       PetscFE fe = (PetscFE)obj;
1663e729f68cSMatthew G. Knepley 
16649566063dSJacob Faibussowitsch       PetscCall(PetscFEGetQuadrature(fe, &quad));
16659566063dSJacob Faibussowitsch       PetscCall(PetscFEGetNumComponents(fe, &Nc));
1666e729f68cSMatthew G. Knepley     } else if (id == PETSCFV_CLASSID) {
1667e729f68cSMatthew G. Knepley       PetscFV fv = (PetscFV)obj;
1668e729f68cSMatthew G. Knepley 
16699566063dSJacob Faibussowitsch       PetscCall(PetscFVGetQuadrature(fv, &quad));
16709566063dSJacob Faibussowitsch       PetscCall(PetscFVGetNumComponents(fv, &Nc));
167163a3b9bcSJacob Faibussowitsch     } else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, field);
1672e729f68cSMatthew G. Knepley     numComponents += Nc;
1673e729f68cSMatthew G. Knepley   }
16749566063dSJacob Faibussowitsch   PetscCall(PetscQuadratureGetData(quad, NULL, &qNc, &Nq, &quadPoints, &quadWeights));
167563a3b9bcSJacob Faibussowitsch   PetscCheck(!(qNc != 1) || !(qNc != numComponents), PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_SIZ, "Quadrature components %" PetscInt_FMT " != %" PetscInt_FMT " field components", qNc, numComponents);
16769566063dSJacob Faibussowitsch   PetscCall(PetscMalloc6(numComponents, &funcVal, numComponents, &interpolant, coordDim * Nq, &coords, Nq, &fegeom.detJ, coordDim * coordDim * Nq, &fegeom.J, coordDim * coordDim * Nq, &fegeom.invJ));
16779566063dSJacob Faibussowitsch   PetscCall(DMPlexGetSimplexOrBoxCells(dm, 0, &cStart, &cEnd));
1678e729f68cSMatthew G. Knepley   for (c = cStart; c < cEnd; ++c) {
1679e729f68cSMatthew G. Knepley     PetscScalar *x        = NULL;
16806f288a59SMatthew G. Knepley     PetscScalar  elemDiff = 0.0;
16819c3cf19fSMatthew G. Knepley     PetscInt     qc       = 0;
1682e729f68cSMatthew G. Knepley 
16839566063dSJacob Faibussowitsch     PetscCall(DMPlexComputeCellGeometryFEM(dm, c, quad, coords, fegeom.J, fegeom.invJ, fegeom.detJ));
16849566063dSJacob Faibussowitsch     PetscCall(DMPlexVecGetClosure(dm, NULL, localX, c, NULL, &x));
1685e729f68cSMatthew G. Knepley 
1686e729f68cSMatthew G. Knepley     for (field = 0, fieldOffset = 0; field < numFields; ++field) {
1687e729f68cSMatthew G. Knepley       PetscObject  obj;
1688e729f68cSMatthew G. Knepley       PetscClassId id;
1689e729f68cSMatthew G. Knepley       void *const  ctx = ctxs ? ctxs[field] : NULL;
1690e729f68cSMatthew G. Knepley       PetscInt     Nb, Nc, q, fc;
1691e729f68cSMatthew G. Knepley 
16929566063dSJacob Faibussowitsch       PetscCall(DMGetField(dm, field, NULL, &obj));
16939566063dSJacob Faibussowitsch       PetscCall(PetscObjectGetClassId(obj, &id));
16949371c9d4SSatish Balay       if (id == PETSCFE_CLASSID) {
16959371c9d4SSatish Balay         PetscCall(PetscFEGetNumComponents((PetscFE)obj, &Nc));
16969371c9d4SSatish Balay         PetscCall(PetscFEGetDimension((PetscFE)obj, &Nb));
16979371c9d4SSatish Balay       } else if (id == PETSCFV_CLASSID) {
16989371c9d4SSatish Balay         PetscCall(PetscFVGetNumComponents((PetscFV)obj, &Nc));
16999371c9d4SSatish Balay         Nb = 1;
17009371c9d4SSatish Balay       } else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, field);
170123f34ed2SToby Isaac       if (funcs[field]) {
17027318780aSToby Isaac         for (q = 0; q < Nq; ++q) {
17032a4e142eSMatthew G. Knepley           PetscFEGeom qgeom;
17042a4e142eSMatthew G. Knepley 
17052a4e142eSMatthew G. Knepley           qgeom.dimEmbed = fegeom.dimEmbed;
17062a4e142eSMatthew G. Knepley           qgeom.J        = &fegeom.J[q * coordDim * coordDim];
17072a4e142eSMatthew G. Knepley           qgeom.invJ     = &fegeom.invJ[q * coordDim * coordDim];
17082a4e142eSMatthew G. Knepley           qgeom.detJ     = &fegeom.detJ[q];
170963a3b9bcSJacob Faibussowitsch           PetscCheck(fegeom.detJ[q] > 0.0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Invalid determinant %g for element %" PetscInt_FMT ", quadrature points %" PetscInt_FMT, (double)fegeom.detJ[q], c, q);
17109566063dSJacob Faibussowitsch           PetscCall((*funcs[field])(coordDim, time, &coords[q * coordDim], Nc, funcVal, ctx));
1711c3e24edfSBarry Smith #if defined(needs_fix_with_return_code_argument)
1712e735a8a9SMatthew G. Knepley           if (ierr) {
17139566063dSJacob Faibussowitsch             PetscCall(DMPlexVecRestoreClosure(dm, NULL, localX, c, NULL, &x));
17149566063dSJacob Faibussowitsch             PetscCall(PetscFree6(funcVal, interpolant, coords, fegeom.detJ, fegeom.J, fegeom.invJ));
17159566063dSJacob Faibussowitsch             PetscCall(DMRestoreLocalVector(dm, &localX));
1716e735a8a9SMatthew G. Knepley           }
1717c3e24edfSBarry Smith #endif
17189566063dSJacob Faibussowitsch           if (id == PETSCFE_CLASSID) PetscCall(PetscFEInterpolate_Static((PetscFE)obj, &x[fieldOffset], &qgeom, q, interpolant));
17199566063dSJacob Faibussowitsch           else if (id == PETSCFV_CLASSID) PetscCall(PetscFVInterpolate_Static((PetscFV)obj, &x[fieldOffset], q, interpolant));
172063a3b9bcSJacob Faibussowitsch           else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, field);
1721e729f68cSMatthew G. Knepley           for (fc = 0; fc < Nc; ++fc) {
1722beaa55a6SMatthew G. Knepley             const PetscReal wt = quadWeights[q * qNc + (qNc == 1 ? 0 : qc + fc)];
17234bee2e38SMatthew G. Knepley             elemDiff += PetscSqr(PetscRealPart(interpolant[fc] - funcVal[fc])) * wt * fegeom.detJ[q];
1724e729f68cSMatthew G. Knepley           }
1725e729f68cSMatthew G. Knepley         }
172623f34ed2SToby Isaac       }
1727beaa55a6SMatthew G. Knepley       fieldOffset += Nb;
17289c3cf19fSMatthew G. Knepley       qc += Nc;
1729e729f68cSMatthew G. Knepley     }
17309566063dSJacob Faibussowitsch     PetscCall(DMPlexVecRestoreClosure(dm, NULL, localX, c, NULL, &x));
17319566063dSJacob Faibussowitsch     PetscCall(VecSetValue(D, c - cStart, elemDiff, INSERT_VALUES));
1732e729f68cSMatthew G. Knepley   }
17339566063dSJacob Faibussowitsch   PetscCall(PetscFree6(funcVal, interpolant, coords, fegeom.detJ, fegeom.J, fegeom.invJ));
17349566063dSJacob Faibussowitsch   PetscCall(DMRestoreLocalVector(dm, &localX));
17359566063dSJacob Faibussowitsch   PetscCall(VecSqrtAbs(D));
17363ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1737e729f68cSMatthew G. Knepley }
1738e729f68cSMatthew G. Knepley 
17395f0b18bfSMatthew G. Knepley /*@
17405f0b18bfSMatthew G. Knepley   DMPlexComputeClementInterpolant - This function computes the L2 projection of the cellwise values of a function u onto P1, and stores it in a Vec.
17415f0b18bfSMatthew G. Knepley 
17425f0b18bfSMatthew G. Knepley   Collective on dm
17435f0b18bfSMatthew G. Knepley 
17445f0b18bfSMatthew G. Knepley   Input Parameters:
1745a1cb98faSBarry Smith + dm - The `DM`
17465f0b18bfSMatthew G. Knepley - locX  - The coefficient vector u_h
17475f0b18bfSMatthew G. Knepley 
17485f0b18bfSMatthew G. Knepley   Output Parameter:
1749a1cb98faSBarry Smith . locC - A `Vec` which holds the Clement interpolant of the function
17505f0b18bfSMatthew G. Knepley 
17515f0b18bfSMatthew G. Knepley   Level: developer
17525f0b18bfSMatthew G. Knepley 
1753a1cb98faSBarry Smith   Note:
1754a1cb98faSBarry Smith   $ u_h(v_i) = \sum_{T_i \in support(v_i)} |T_i| u_h(T_i) / \sum_{T_i \in support(v_i)} |T_i| $ where $ |T_i| $ is the cell volume
1755a1cb98faSBarry Smith 
1756a1cb98faSBarry Smith .seealso: [](chapter_unstructured), `DM`, `DMPLEX`, `DMProjectFunction()`, `DMComputeL2Diff()`, `DMPlexComputeL2FieldDiff()`, `DMComputeL2GradientDiff()`
17575f0b18bfSMatthew G. Knepley @*/
1758d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeClementInterpolant(DM dm, Vec locX, Vec locC)
1759d71ae5a4SJacob Faibussowitsch {
17605f0b18bfSMatthew G. Knepley   PetscInt         debug = ((DM_Plex *)dm->data)->printFEM;
17615f0b18bfSMatthew G. Knepley   DM               dmc;
17625f0b18bfSMatthew G. Knepley   PetscQuadrature  quad;
17635f0b18bfSMatthew G. Knepley   PetscScalar     *interpolant, *valsum;
17645f0b18bfSMatthew G. Knepley   PetscFEGeom      fegeom;
17655f0b18bfSMatthew G. Knepley   PetscReal       *coords;
17665f0b18bfSMatthew G. Knepley   const PetscReal *quadPoints, *quadWeights;
17675f0b18bfSMatthew G. Knepley   PetscInt         dim, cdim, Nf, f, Nc = 0, Nq, qNc, cStart, cEnd, vStart, vEnd, v;
17685f0b18bfSMatthew G. Knepley 
17695f0b18bfSMatthew G. Knepley   PetscFunctionBegin;
17709566063dSJacob Faibussowitsch   PetscCall(PetscCitationsRegister(ClementCitation, &Clementcite));
17719566063dSJacob Faibussowitsch   PetscCall(VecGetDM(locC, &dmc));
17729566063dSJacob Faibussowitsch   PetscCall(VecSet(locC, 0.0));
17739566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dm, &dim));
17749566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateDim(dm, &cdim));
17755f0b18bfSMatthew G. Knepley   fegeom.dimEmbed = cdim;
17769566063dSJacob Faibussowitsch   PetscCall(DMGetNumFields(dm, &Nf));
17775f0b18bfSMatthew G. Knepley   PetscCheck(Nf > 0, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of fields is zero!");
17785f0b18bfSMatthew G. Knepley   for (f = 0; f < Nf; ++f) {
17795f0b18bfSMatthew G. Knepley     PetscObject  obj;
17805f0b18bfSMatthew G. Knepley     PetscClassId id;
17815f0b18bfSMatthew G. Knepley     PetscInt     fNc;
17825f0b18bfSMatthew G. Knepley 
17839566063dSJacob Faibussowitsch     PetscCall(DMGetField(dm, f, NULL, &obj));
17849566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetClassId(obj, &id));
17855f0b18bfSMatthew G. Knepley     if (id == PETSCFE_CLASSID) {
17865f0b18bfSMatthew G. Knepley       PetscFE fe = (PetscFE)obj;
17875f0b18bfSMatthew G. Knepley 
17889566063dSJacob Faibussowitsch       PetscCall(PetscFEGetQuadrature(fe, &quad));
17899566063dSJacob Faibussowitsch       PetscCall(PetscFEGetNumComponents(fe, &fNc));
17905f0b18bfSMatthew G. Knepley     } else if (id == PETSCFV_CLASSID) {
17915f0b18bfSMatthew G. Knepley       PetscFV fv = (PetscFV)obj;
17925f0b18bfSMatthew G. Knepley 
17939566063dSJacob Faibussowitsch       PetscCall(PetscFVGetQuadrature(fv, &quad));
17949566063dSJacob Faibussowitsch       PetscCall(PetscFVGetNumComponents(fv, &fNc));
179563a3b9bcSJacob Faibussowitsch     } else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, f);
17965f0b18bfSMatthew G. Knepley     Nc += fNc;
17975f0b18bfSMatthew G. Knepley   }
17989566063dSJacob Faibussowitsch   PetscCall(PetscQuadratureGetData(quad, NULL, &qNc, &Nq, &quadPoints, &quadWeights));
179963a3b9bcSJacob Faibussowitsch   PetscCheck(qNc == 1, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_SIZ, "Quadrature components %" PetscInt_FMT " > 1", qNc);
18009566063dSJacob Faibussowitsch   PetscCall(PetscMalloc6(Nc * 2, &valsum, Nc, &interpolant, cdim * Nq, &coords, Nq, &fegeom.detJ, cdim * cdim * Nq, &fegeom.J, cdim * cdim * Nq, &fegeom.invJ));
18019566063dSJacob Faibussowitsch   PetscCall(DMPlexGetDepthStratum(dm, 0, &vStart, &vEnd));
18029566063dSJacob Faibussowitsch   PetscCall(DMPlexGetSimplexOrBoxCells(dm, 0, &cStart, &cEnd));
18035f0b18bfSMatthew G. Knepley   for (v = vStart; v < vEnd; ++v) {
18045f0b18bfSMatthew G. Knepley     PetscScalar volsum = 0.0;
18055f0b18bfSMatthew G. Knepley     PetscInt   *star   = NULL;
18065f0b18bfSMatthew G. Knepley     PetscInt    starSize, st, fc;
18075f0b18bfSMatthew G. Knepley 
18089566063dSJacob Faibussowitsch     PetscCall(PetscArrayzero(valsum, Nc));
18099566063dSJacob Faibussowitsch     PetscCall(DMPlexGetTransitiveClosure(dm, v, PETSC_FALSE, &starSize, &star));
18105f0b18bfSMatthew G. Knepley     for (st = 0; st < starSize * 2; st += 2) {
18115f0b18bfSMatthew G. Knepley       const PetscInt cell = star[st];
18125f0b18bfSMatthew G. Knepley       PetscScalar   *val  = &valsum[Nc];
18135f0b18bfSMatthew G. Knepley       PetscScalar   *x    = NULL;
18145f0b18bfSMatthew G. Knepley       PetscReal      vol  = 0.0;
18155f0b18bfSMatthew G. Knepley       PetscInt       foff = 0;
18165f0b18bfSMatthew G. Knepley 
18175f0b18bfSMatthew G. Knepley       if ((cell < cStart) || (cell >= cEnd)) continue;
18189566063dSJacob Faibussowitsch       PetscCall(DMPlexComputeCellGeometryFEM(dm, cell, quad, coords, fegeom.J, fegeom.invJ, fegeom.detJ));
18199566063dSJacob Faibussowitsch       PetscCall(DMPlexVecGetClosure(dm, NULL, locX, cell, NULL, &x));
18205f0b18bfSMatthew G. Knepley       for (f = 0; f < Nf; ++f) {
18215f0b18bfSMatthew G. Knepley         PetscObject  obj;
18225f0b18bfSMatthew G. Knepley         PetscClassId id;
18235f0b18bfSMatthew G. Knepley         PetscInt     Nb, fNc, q;
18245f0b18bfSMatthew G. Knepley 
18259566063dSJacob Faibussowitsch         PetscCall(PetscArrayzero(val, Nc));
18269566063dSJacob Faibussowitsch         PetscCall(DMGetField(dm, f, NULL, &obj));
18279566063dSJacob Faibussowitsch         PetscCall(PetscObjectGetClassId(obj, &id));
18289371c9d4SSatish Balay         if (id == PETSCFE_CLASSID) {
18299371c9d4SSatish Balay           PetscCall(PetscFEGetNumComponents((PetscFE)obj, &fNc));
18309371c9d4SSatish Balay           PetscCall(PetscFEGetDimension((PetscFE)obj, &Nb));
18319371c9d4SSatish Balay         } else if (id == PETSCFV_CLASSID) {
18329371c9d4SSatish Balay           PetscCall(PetscFVGetNumComponents((PetscFV)obj, &fNc));
18339371c9d4SSatish Balay           Nb = 1;
18349371c9d4SSatish Balay         } else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, f);
18355f0b18bfSMatthew G. Knepley         for (q = 0; q < Nq; ++q) {
18365f0b18bfSMatthew G. Knepley           const PetscReal wt = quadWeights[q] * fegeom.detJ[q];
18375f0b18bfSMatthew G. Knepley           PetscFEGeom     qgeom;
18385f0b18bfSMatthew G. Knepley 
18395f0b18bfSMatthew G. Knepley           qgeom.dimEmbed = fegeom.dimEmbed;
18405f0b18bfSMatthew G. Knepley           qgeom.J        = &fegeom.J[q * cdim * cdim];
18415f0b18bfSMatthew G. Knepley           qgeom.invJ     = &fegeom.invJ[q * cdim * cdim];
18425f0b18bfSMatthew G. Knepley           qgeom.detJ     = &fegeom.detJ[q];
184363a3b9bcSJacob Faibussowitsch           PetscCheck(fegeom.detJ[q] > 0.0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Invalid determinant %g for element %" PetscInt_FMT ", quadrature points %" PetscInt_FMT, (double)fegeom.detJ[q], cell, q);
18449566063dSJacob Faibussowitsch           if (id == PETSCFE_CLASSID) PetscCall(PetscFEInterpolate_Static((PetscFE)obj, &x[foff], &qgeom, q, interpolant));
184563a3b9bcSJacob Faibussowitsch           else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, f);
18465f0b18bfSMatthew G. Knepley           for (fc = 0; fc < fNc; ++fc) val[foff + fc] += interpolant[fc] * wt;
18475f0b18bfSMatthew G. Knepley           vol += wt;
18485f0b18bfSMatthew G. Knepley         }
18495f0b18bfSMatthew G. Knepley         foff += Nb;
18505f0b18bfSMatthew G. Knepley       }
18519566063dSJacob Faibussowitsch       PetscCall(DMPlexVecRestoreClosure(dm, NULL, locX, cell, NULL, &x));
18525f0b18bfSMatthew G. Knepley       for (fc = 0; fc < Nc; ++fc) valsum[fc] += val[fc];
18535f0b18bfSMatthew G. Knepley       volsum += vol;
18545f0b18bfSMatthew G. Knepley       if (debug) {
18559566063dSJacob Faibussowitsch         PetscCall(PetscPrintf(PETSC_COMM_SELF, "Vertex %" PetscInt_FMT " Cell %" PetscInt_FMT " value: [", v, cell));
18565f0b18bfSMatthew G. Knepley         for (fc = 0; fc < Nc; ++fc) {
18579566063dSJacob Faibussowitsch           if (fc) PetscCall(PetscPrintf(PETSC_COMM_SELF, ", "));
18589566063dSJacob Faibussowitsch           PetscCall(PetscPrintf(PETSC_COMM_SELF, "%g", (double)PetscRealPart(val[fc])));
18595f0b18bfSMatthew G. Knepley         }
18609566063dSJacob Faibussowitsch         PetscCall(PetscPrintf(PETSC_COMM_SELF, "]\n"));
18615f0b18bfSMatthew G. Knepley       }
18625f0b18bfSMatthew G. Knepley     }
18635f0b18bfSMatthew G. Knepley     for (fc = 0; fc < Nc; ++fc) valsum[fc] /= volsum;
18649566063dSJacob Faibussowitsch     PetscCall(DMPlexRestoreTransitiveClosure(dm, v, PETSC_FALSE, &starSize, &star));
18659566063dSJacob Faibussowitsch     PetscCall(DMPlexVecSetClosure(dmc, NULL, locC, v, valsum, INSERT_VALUES));
18665f0b18bfSMatthew G. Knepley   }
18679566063dSJacob Faibussowitsch   PetscCall(PetscFree6(valsum, interpolant, coords, fegeom.detJ, fegeom.J, fegeom.invJ));
18683ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
18695f0b18bfSMatthew G. Knepley }
18705f0b18bfSMatthew G. Knepley 
18715f0b18bfSMatthew G. Knepley /*@
18721555c271SMatthew G. Knepley   DMPlexComputeGradientClementInterpolant - This function computes the L2 projection of the cellwise gradient of a function u onto P1, and stores it in a Vec.
18731555c271SMatthew G. Knepley 
1874d083f849SBarry Smith   Collective on dm
1875c0f8e1fdSMatthew G. Knepley 
18761555c271SMatthew G. Knepley   Input Parameters:
1877a1cb98faSBarry Smith + dm - The `DM`
18785f0b18bfSMatthew G. Knepley - locX  - The coefficient vector u_h
18791555c271SMatthew G. Knepley 
18801555c271SMatthew G. Knepley   Output Parameter:
1881a1cb98faSBarry Smith . locC - A `Vec` which holds the Clement interpolant of the gradient
18821555c271SMatthew G. Knepley 
18831555c271SMatthew G. Knepley   Level: developer
18841555c271SMatthew G. Knepley 
1885a1cb98faSBarry Smith   Note:
1886a1cb98faSBarry Smith   $\nabla u_h(v_i) = \sum_{T_i \in support(v_i)} |T_i| \nabla u_h(T_i) / \sum_{T_i \in support(v_i)} |T_i| $ where $ |T_i| $ is the cell volume
1887a1cb98faSBarry Smith 
1888a1cb98faSBarry Smith .seealso: [](chapter_unstructured), `DM`, `DMPLEX`, `DMProjectFunction()`, `DMComputeL2Diff()`, `DMPlexComputeL2FieldDiff()`, `DMComputeL2GradientDiff()`
18891555c271SMatthew G. Knepley @*/
1890d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeGradientClementInterpolant(DM dm, Vec locX, Vec locC)
1891d71ae5a4SJacob Faibussowitsch {
1892db1066baSMatthew G. Knepley   DM_Plex         *mesh  = (DM_Plex *)dm->data;
1893db1066baSMatthew G. Knepley   PetscInt         debug = mesh->printFEM;
18941555c271SMatthew G. Knepley   DM               dmC;
18951555c271SMatthew G. Knepley   PetscQuadrature  quad;
18961555c271SMatthew G. Knepley   PetscScalar     *interpolant, *gradsum;
18974bee2e38SMatthew G. Knepley   PetscFEGeom      fegeom;
18984bee2e38SMatthew G. Knepley   PetscReal       *coords;
18991555c271SMatthew G. Knepley   const PetscReal *quadPoints, *quadWeights;
1900485ad865SMatthew G. Knepley   PetscInt         dim, coordDim, numFields, numComponents = 0, qNc, Nq, cStart, cEnd, vStart, vEnd, v, field, fieldOffset;
19011555c271SMatthew G. Knepley 
19021555c271SMatthew G. Knepley   PetscFunctionBegin;
19039566063dSJacob Faibussowitsch   PetscCall(PetscCitationsRegister(ClementCitation, &Clementcite));
19049566063dSJacob Faibussowitsch   PetscCall(VecGetDM(locC, &dmC));
19059566063dSJacob Faibussowitsch   PetscCall(VecSet(locC, 0.0));
19069566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dm, &dim));
19079566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateDim(dm, &coordDim));
19084bee2e38SMatthew G. Knepley   fegeom.dimEmbed = coordDim;
19099566063dSJacob Faibussowitsch   PetscCall(DMGetNumFields(dm, &numFields));
19105f80ce2aSJacob Faibussowitsch   PetscCheck(numFields, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of fields is zero!");
19111555c271SMatthew G. Knepley   for (field = 0; field < numFields; ++field) {
19121555c271SMatthew G. Knepley     PetscObject  obj;
19131555c271SMatthew G. Knepley     PetscClassId id;
19141555c271SMatthew G. Knepley     PetscInt     Nc;
19151555c271SMatthew G. Knepley 
19169566063dSJacob Faibussowitsch     PetscCall(DMGetField(dm, field, NULL, &obj));
19179566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetClassId(obj, &id));
19181555c271SMatthew G. Knepley     if (id == PETSCFE_CLASSID) {
19191555c271SMatthew G. Knepley       PetscFE fe = (PetscFE)obj;
19201555c271SMatthew G. Knepley 
19219566063dSJacob Faibussowitsch       PetscCall(PetscFEGetQuadrature(fe, &quad));
19229566063dSJacob Faibussowitsch       PetscCall(PetscFEGetNumComponents(fe, &Nc));
19231555c271SMatthew G. Knepley     } else if (id == PETSCFV_CLASSID) {
19241555c271SMatthew G. Knepley       PetscFV fv = (PetscFV)obj;
19251555c271SMatthew G. Knepley 
19269566063dSJacob Faibussowitsch       PetscCall(PetscFVGetQuadrature(fv, &quad));
19279566063dSJacob Faibussowitsch       PetscCall(PetscFVGetNumComponents(fv, &Nc));
192863a3b9bcSJacob Faibussowitsch     } else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, field);
19291555c271SMatthew G. Knepley     numComponents += Nc;
19301555c271SMatthew G. Knepley   }
19319566063dSJacob Faibussowitsch   PetscCall(PetscQuadratureGetData(quad, NULL, &qNc, &Nq, &quadPoints, &quadWeights));
193263a3b9bcSJacob Faibussowitsch   PetscCheck(!(qNc != 1) || !(qNc != numComponents), PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_SIZ, "Quadrature components %" PetscInt_FMT " != %" PetscInt_FMT " field components", qNc, numComponents);
19339566063dSJacob Faibussowitsch   PetscCall(PetscMalloc6(coordDim * numComponents * 2, &gradsum, coordDim * numComponents, &interpolant, coordDim * Nq, &coords, Nq, &fegeom.detJ, coordDim * coordDim * Nq, &fegeom.J, coordDim * coordDim * Nq, &fegeom.invJ));
19349566063dSJacob Faibussowitsch   PetscCall(DMPlexGetDepthStratum(dm, 0, &vStart, &vEnd));
19359566063dSJacob Faibussowitsch   PetscCall(DMPlexGetSimplexOrBoxCells(dm, 0, &cStart, &cEnd));
19361555c271SMatthew G. Knepley   for (v = vStart; v < vEnd; ++v) {
19371555c271SMatthew G. Knepley     PetscScalar volsum = 0.0;
19381555c271SMatthew G. Knepley     PetscInt   *star   = NULL;
19391555c271SMatthew G. Knepley     PetscInt    starSize, st, d, fc;
19401555c271SMatthew G. Knepley 
19419566063dSJacob Faibussowitsch     PetscCall(PetscArrayzero(gradsum, coordDim * numComponents));
19429566063dSJacob Faibussowitsch     PetscCall(DMPlexGetTransitiveClosure(dm, v, PETSC_FALSE, &starSize, &star));
19431555c271SMatthew G. Knepley     for (st = 0; st < starSize * 2; st += 2) {
19441555c271SMatthew G. Knepley       const PetscInt cell = star[st];
19451555c271SMatthew G. Knepley       PetscScalar   *grad = &gradsum[coordDim * numComponents];
19461555c271SMatthew G. Knepley       PetscScalar   *x    = NULL;
19471555c271SMatthew G. Knepley       PetscReal      vol  = 0.0;
19481555c271SMatthew G. Knepley 
19491555c271SMatthew G. Knepley       if ((cell < cStart) || (cell >= cEnd)) continue;
19509566063dSJacob Faibussowitsch       PetscCall(DMPlexComputeCellGeometryFEM(dm, cell, quad, coords, fegeom.J, fegeom.invJ, fegeom.detJ));
19519566063dSJacob Faibussowitsch       PetscCall(DMPlexVecGetClosure(dm, NULL, locX, cell, NULL, &x));
19521555c271SMatthew G. Knepley       for (field = 0, fieldOffset = 0; field < numFields; ++field) {
19531555c271SMatthew G. Knepley         PetscObject  obj;
19541555c271SMatthew G. Knepley         PetscClassId id;
19551555c271SMatthew G. Knepley         PetscInt     Nb, Nc, q, qc = 0;
19561555c271SMatthew G. Knepley 
19579566063dSJacob Faibussowitsch         PetscCall(PetscArrayzero(grad, coordDim * numComponents));
19589566063dSJacob Faibussowitsch         PetscCall(DMGetField(dm, field, NULL, &obj));
19599566063dSJacob Faibussowitsch         PetscCall(PetscObjectGetClassId(obj, &id));
19609371c9d4SSatish Balay         if (id == PETSCFE_CLASSID) {
19619371c9d4SSatish Balay           PetscCall(PetscFEGetNumComponents((PetscFE)obj, &Nc));
19629371c9d4SSatish Balay           PetscCall(PetscFEGetDimension((PetscFE)obj, &Nb));
19639371c9d4SSatish Balay         } else if (id == PETSCFV_CLASSID) {
19649371c9d4SSatish Balay           PetscCall(PetscFVGetNumComponents((PetscFV)obj, &Nc));
19659371c9d4SSatish Balay           Nb = 1;
19669371c9d4SSatish Balay         } else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, field);
19671555c271SMatthew G. Knepley         for (q = 0; q < Nq; ++q) {
19682a4e142eSMatthew G. Knepley           PetscFEGeom qgeom;
19692a4e142eSMatthew G. Knepley 
19702a4e142eSMatthew G. Knepley           qgeom.dimEmbed = fegeom.dimEmbed;
19712a4e142eSMatthew G. Knepley           qgeom.J        = &fegeom.J[q * coordDim * coordDim];
19722a4e142eSMatthew G. Knepley           qgeom.invJ     = &fegeom.invJ[q * coordDim * coordDim];
19732a4e142eSMatthew G. Knepley           qgeom.detJ     = &fegeom.detJ[q];
197463a3b9bcSJacob Faibussowitsch           PetscCheck(fegeom.detJ[q] > 0.0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Invalid determinant %g for element %" PetscInt_FMT ", quadrature points %" PetscInt_FMT, (double)fegeom.detJ[q], cell, q);
19759566063dSJacob Faibussowitsch           if (id == PETSCFE_CLASSID) PetscCall(PetscFEInterpolateGradient_Static((PetscFE)obj, 1, &x[fieldOffset], &qgeom, q, interpolant));
197663a3b9bcSJacob Faibussowitsch           else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, field);
19771555c271SMatthew G. Knepley           for (fc = 0; fc < Nc; ++fc) {
197853d2db2dSJoe Wallwork             const PetscReal wt = quadWeights[q * qNc + qc];
19791555c271SMatthew G. Knepley 
19804bee2e38SMatthew G. Knepley             for (d = 0; d < coordDim; ++d) grad[fc * coordDim + d] += interpolant[fc * dim + d] * wt * fegeom.detJ[q];
19811555c271SMatthew G. Knepley           }
19824bee2e38SMatthew G. Knepley           vol += quadWeights[q * qNc] * fegeom.detJ[q];
19831555c271SMatthew G. Knepley         }
19841555c271SMatthew G. Knepley         fieldOffset += Nb;
19851555c271SMatthew G. Knepley         qc += Nc;
19861555c271SMatthew G. Knepley       }
19879566063dSJacob Faibussowitsch       PetscCall(DMPlexVecRestoreClosure(dm, NULL, locX, cell, NULL, &x));
1988f8527842SMatthew G. Knepley       for (fc = 0; fc < numComponents; ++fc) {
1989ad540459SPierre Jolivet         for (d = 0; d < coordDim; ++d) gradsum[fc * coordDim + d] += grad[fc * coordDim + d];
1990f8527842SMatthew G. Knepley       }
1991f8527842SMatthew G. Knepley       volsum += vol;
1992db1066baSMatthew G. Knepley       if (debug) {
19939566063dSJacob Faibussowitsch         PetscCall(PetscPrintf(PETSC_COMM_SELF, "Vertex %" PetscInt_FMT " Cell %" PetscInt_FMT " gradient: [", v, cell));
19941555c271SMatthew G. Knepley         for (fc = 0; fc < numComponents; ++fc) {
19951555c271SMatthew G. Knepley           for (d = 0; d < coordDim; ++d) {
19969566063dSJacob Faibussowitsch             if (fc || d > 0) PetscCall(PetscPrintf(PETSC_COMM_SELF, ", "));
19979566063dSJacob Faibussowitsch             PetscCall(PetscPrintf(PETSC_COMM_SELF, "%g", (double)PetscRealPart(grad[fc * coordDim + d])));
19981555c271SMatthew G. Knepley           }
19991555c271SMatthew G. Knepley         }
20009566063dSJacob Faibussowitsch         PetscCall(PetscPrintf(PETSC_COMM_SELF, "]\n"));
2001db1066baSMatthew G. Knepley       }
20021555c271SMatthew G. Knepley     }
20031555c271SMatthew G. Knepley     for (fc = 0; fc < numComponents; ++fc) {
20041555c271SMatthew G. Knepley       for (d = 0; d < coordDim; ++d) gradsum[fc * coordDim + d] /= volsum;
20051555c271SMatthew G. Knepley     }
20069566063dSJacob Faibussowitsch     PetscCall(DMPlexRestoreTransitiveClosure(dm, v, PETSC_FALSE, &starSize, &star));
20079566063dSJacob Faibussowitsch     PetscCall(DMPlexVecSetClosure(dmC, NULL, locC, v, gradsum, INSERT_VALUES));
20081555c271SMatthew G. Knepley   }
20099566063dSJacob Faibussowitsch   PetscCall(PetscFree6(gradsum, interpolant, coords, fegeom.detJ, fegeom.J, fegeom.invJ));
20103ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
20111555c271SMatthew G. Knepley }
20121555c271SMatthew G. Knepley 
2013d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexComputeIntegral_Internal(DM dm, Vec X, PetscInt cStart, PetscInt cEnd, PetscScalar *cintegral, void *user)
2014d71ae5a4SJacob Faibussowitsch {
2015338f77d5SMatthew G. Knepley   DM           dmAux = NULL;
201661aaff12SToby Isaac   PetscDS      prob, probAux = NULL;
201773d901b8SMatthew G. Knepley   PetscSection section, sectionAux;
2018338f77d5SMatthew G. Knepley   Vec          locX, locA;
2019c330f8ffSToby Isaac   PetscInt     dim, numCells = cEnd - cStart, c, f;
2020c330f8ffSToby Isaac   PetscBool    useFVM = PETSC_FALSE;
2021338f77d5SMatthew G. Knepley   /* DS */
2022338f77d5SMatthew G. Knepley   PetscInt           Nf, totDim, *uOff, *uOff_x, numConstants;
2023338f77d5SMatthew G. Knepley   PetscInt           NfAux, totDimAux, *aOff;
2024338f77d5SMatthew G. Knepley   PetscScalar       *u, *a;
2025338f77d5SMatthew G. Knepley   const PetscScalar *constants;
2026338f77d5SMatthew G. Knepley   /* Geometry */
2027c330f8ffSToby Isaac   PetscFEGeom       *cgeomFEM;
2028338f77d5SMatthew G. Knepley   DM                 dmGrad;
2029c330f8ffSToby Isaac   PetscQuadrature    affineQuad      = NULL;
2030338f77d5SMatthew G. Knepley   Vec                cellGeometryFVM = NULL, faceGeometryFVM = NULL, locGrad = NULL;
2031b5a3613cSMatthew G. Knepley   PetscFVCellGeom   *cgeomFVM;
2032338f77d5SMatthew G. Knepley   const PetscScalar *lgrad;
2033b7260050SToby Isaac   PetscInt           maxDegree;
2034c330f8ffSToby Isaac   DMField            coordField;
2035c330f8ffSToby Isaac   IS                 cellIS;
203673d901b8SMatthew G. Knepley 
203773d901b8SMatthew G. Knepley   PetscFunctionBegin;
20389566063dSJacob Faibussowitsch   PetscCall(DMGetDS(dm, &prob));
20399566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dm, &dim));
20409566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dm, &section));
20419566063dSJacob Faibussowitsch   PetscCall(DMGetNumFields(dm, &Nf));
2042338f77d5SMatthew G. Knepley   /* Determine which discretizations we have */
2043b5a3613cSMatthew G. Knepley   for (f = 0; f < Nf; ++f) {
2044b5a3613cSMatthew G. Knepley     PetscObject  obj;
2045b5a3613cSMatthew G. Knepley     PetscClassId id;
2046b5a3613cSMatthew G. Knepley 
20479566063dSJacob Faibussowitsch     PetscCall(PetscDSGetDiscretization(prob, f, &obj));
20489566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetClassId(obj, &id));
2049338f77d5SMatthew G. Knepley     if (id == PETSCFV_CLASSID) useFVM = PETSC_TRUE;
2050338f77d5SMatthew G. Knepley   }
2051338f77d5SMatthew G. Knepley   /* Get local solution with boundary values */
20529566063dSJacob Faibussowitsch   PetscCall(DMGetLocalVector(dm, &locX));
20539566063dSJacob Faibussowitsch   PetscCall(DMPlexInsertBoundaryValues(dm, PETSC_TRUE, locX, 0.0, NULL, NULL, NULL));
20549566063dSJacob Faibussowitsch   PetscCall(DMGlobalToLocalBegin(dm, X, INSERT_VALUES, locX));
20559566063dSJacob Faibussowitsch   PetscCall(DMGlobalToLocalEnd(dm, X, INSERT_VALUES, locX));
2056338f77d5SMatthew G. Knepley   /* Read DS information */
20579566063dSJacob Faibussowitsch   PetscCall(PetscDSGetTotalDimension(prob, &totDim));
20589566063dSJacob Faibussowitsch   PetscCall(PetscDSGetComponentOffsets(prob, &uOff));
20599566063dSJacob Faibussowitsch   PetscCall(PetscDSGetComponentDerivativeOffsets(prob, &uOff_x));
20609566063dSJacob Faibussowitsch   PetscCall(ISCreateStride(PETSC_COMM_SELF, numCells, cStart, 1, &cellIS));
20619566063dSJacob Faibussowitsch   PetscCall(PetscDSGetConstants(prob, &numConstants, &constants));
2062338f77d5SMatthew G. Knepley   /* Read Auxiliary DS information */
20639566063dSJacob Faibussowitsch   PetscCall(DMGetAuxiliaryVec(dm, NULL, 0, 0, &locA));
20649a2a23afSMatthew G. Knepley   if (locA) {
20659566063dSJacob Faibussowitsch     PetscCall(VecGetDM(locA, &dmAux));
20669566063dSJacob Faibussowitsch     PetscCall(DMGetDS(dmAux, &probAux));
20679566063dSJacob Faibussowitsch     PetscCall(PetscDSGetNumFields(probAux, &NfAux));
20689566063dSJacob Faibussowitsch     PetscCall(DMGetLocalSection(dmAux, &sectionAux));
20699566063dSJacob Faibussowitsch     PetscCall(PetscDSGetTotalDimension(probAux, &totDimAux));
20709566063dSJacob Faibussowitsch     PetscCall(PetscDSGetComponentOffsets(probAux, &aOff));
2071338f77d5SMatthew G. Knepley   }
2072338f77d5SMatthew G. Knepley   /* Allocate data  arrays */
20739566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(numCells * totDim, &u));
20749566063dSJacob Faibussowitsch   if (dmAux) PetscCall(PetscMalloc1(numCells * totDimAux, &a));
2075338f77d5SMatthew G. Knepley   /* Read out geometry */
20769566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateField(dm, &coordField));
20779566063dSJacob Faibussowitsch   PetscCall(DMFieldGetDegree(coordField, cellIS, NULL, &maxDegree));
2078b7260050SToby Isaac   if (maxDegree <= 1) {
20799566063dSJacob Faibussowitsch     PetscCall(DMFieldCreateDefaultQuadrature(coordField, cellIS, &affineQuad));
208048a46eb9SPierre Jolivet     if (affineQuad) PetscCall(DMFieldCreateFEGeom(coordField, cellIS, affineQuad, PETSC_FALSE, &cgeomFEM));
2081b5a3613cSMatthew G. Knepley   }
2082b5a3613cSMatthew G. Knepley   if (useFVM) {
2083338f77d5SMatthew G. Knepley     PetscFV   fv = NULL;
2084b5a3613cSMatthew G. Knepley     Vec       grad;
2085b5a3613cSMatthew G. Knepley     PetscInt  fStart, fEnd;
2086b5a3613cSMatthew G. Knepley     PetscBool compGrad;
2087b5a3613cSMatthew G. Knepley 
2088338f77d5SMatthew G. Knepley     for (f = 0; f < Nf; ++f) {
2089338f77d5SMatthew G. Knepley       PetscObject  obj;
2090338f77d5SMatthew G. Knepley       PetscClassId id;
2091338f77d5SMatthew G. Knepley 
20929566063dSJacob Faibussowitsch       PetscCall(PetscDSGetDiscretization(prob, f, &obj));
20939566063dSJacob Faibussowitsch       PetscCall(PetscObjectGetClassId(obj, &id));
20949371c9d4SSatish Balay       if (id == PETSCFV_CLASSID) {
20959371c9d4SSatish Balay         fv = (PetscFV)obj;
20969371c9d4SSatish Balay         break;
20979371c9d4SSatish Balay       }
2098338f77d5SMatthew G. Knepley     }
20999566063dSJacob Faibussowitsch     PetscCall(PetscFVGetComputeGradients(fv, &compGrad));
21009566063dSJacob Faibussowitsch     PetscCall(PetscFVSetComputeGradients(fv, PETSC_TRUE));
21019566063dSJacob Faibussowitsch     PetscCall(DMPlexComputeGeometryFVM(dm, &cellGeometryFVM, &faceGeometryFVM));
21029566063dSJacob Faibussowitsch     PetscCall(DMPlexComputeGradientFVM(dm, fv, faceGeometryFVM, cellGeometryFVM, &dmGrad));
21039566063dSJacob Faibussowitsch     PetscCall(PetscFVSetComputeGradients(fv, compGrad));
21049566063dSJacob Faibussowitsch     PetscCall(VecGetArrayRead(cellGeometryFVM, (const PetscScalar **)&cgeomFVM));
2105b5a3613cSMatthew G. Knepley     /* Reconstruct and limit cell gradients */
21069566063dSJacob Faibussowitsch     PetscCall(DMPlexGetHeightStratum(dm, 1, &fStart, &fEnd));
21079566063dSJacob Faibussowitsch     PetscCall(DMGetGlobalVector(dmGrad, &grad));
21089566063dSJacob Faibussowitsch     PetscCall(DMPlexReconstructGradients_Internal(dm, fv, fStart, fEnd, faceGeometryFVM, cellGeometryFVM, locX, grad));
2109b5a3613cSMatthew G. Knepley     /* Communicate gradient values */
21109566063dSJacob Faibussowitsch     PetscCall(DMGetLocalVector(dmGrad, &locGrad));
21119566063dSJacob Faibussowitsch     PetscCall(DMGlobalToLocalBegin(dmGrad, grad, INSERT_VALUES, locGrad));
21129566063dSJacob Faibussowitsch     PetscCall(DMGlobalToLocalEnd(dmGrad, grad, INSERT_VALUES, locGrad));
21139566063dSJacob Faibussowitsch     PetscCall(DMRestoreGlobalVector(dmGrad, &grad));
2114b5a3613cSMatthew G. Knepley     /* Handle non-essential (e.g. outflow) boundary values */
21159566063dSJacob Faibussowitsch     PetscCall(DMPlexInsertBoundaryValues(dm, PETSC_FALSE, locX, 0.0, faceGeometryFVM, cellGeometryFVM, locGrad));
21169566063dSJacob Faibussowitsch     PetscCall(VecGetArrayRead(locGrad, &lgrad));
2117b5a3613cSMatthew G. Knepley   }
2118338f77d5SMatthew G. Knepley   /* Read out data from inputs */
211973d901b8SMatthew G. Knepley   for (c = cStart; c < cEnd; ++c) {
212073d901b8SMatthew G. Knepley     PetscScalar *x = NULL;
212173d901b8SMatthew G. Knepley     PetscInt     i;
212273d901b8SMatthew G. Knepley 
21239566063dSJacob Faibussowitsch     PetscCall(DMPlexVecGetClosure(dm, section, locX, c, NULL, &x));
21240f2d7e86SMatthew G. Knepley     for (i = 0; i < totDim; ++i) u[c * totDim + i] = x[i];
21259566063dSJacob Faibussowitsch     PetscCall(DMPlexVecRestoreClosure(dm, section, locX, c, NULL, &x));
212673d901b8SMatthew G. Knepley     if (dmAux) {
21279566063dSJacob Faibussowitsch       PetscCall(DMPlexVecGetClosure(dmAux, sectionAux, locA, c, NULL, &x));
21280f2d7e86SMatthew G. Knepley       for (i = 0; i < totDimAux; ++i) a[c * totDimAux + i] = x[i];
21299566063dSJacob Faibussowitsch       PetscCall(DMPlexVecRestoreClosure(dmAux, sectionAux, locA, c, NULL, &x));
213073d901b8SMatthew G. Knepley     }
213173d901b8SMatthew G. Knepley   }
2132338f77d5SMatthew G. Knepley   /* Do integration for each field */
213373d901b8SMatthew G. Knepley   for (f = 0; f < Nf; ++f) {
2134c1f031eeSMatthew G. Knepley     PetscObject  obj;
2135c1f031eeSMatthew G. Knepley     PetscClassId id;
2136c1f031eeSMatthew G. Knepley     PetscInt     numChunks, numBatches, batchSize, numBlocks, blockSize, Ne, Nr, offset;
213773d901b8SMatthew G. Knepley 
21389566063dSJacob Faibussowitsch     PetscCall(PetscDSGetDiscretization(prob, f, &obj));
21399566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetClassId(obj, &id));
2140c1f031eeSMatthew G. Knepley     if (id == PETSCFE_CLASSID) {
2141c1f031eeSMatthew G. Knepley       PetscFE         fe = (PetscFE)obj;
2142c1f031eeSMatthew G. Knepley       PetscQuadrature q;
2143c330f8ffSToby Isaac       PetscFEGeom    *chunkGeom = NULL;
2144c1f031eeSMatthew G. Knepley       PetscInt        Nq, Nb;
2145c1f031eeSMatthew G. Knepley 
21469566063dSJacob Faibussowitsch       PetscCall(PetscFEGetTileSizes(fe, NULL, &numBlocks, NULL, &numBatches));
21479566063dSJacob Faibussowitsch       PetscCall(PetscFEGetQuadrature(fe, &q));
21489566063dSJacob Faibussowitsch       PetscCall(PetscQuadratureGetData(q, NULL, NULL, &Nq, NULL, NULL));
21499566063dSJacob Faibussowitsch       PetscCall(PetscFEGetDimension(fe, &Nb));
2150c1f031eeSMatthew G. Knepley       blockSize = Nb * Nq;
215173d901b8SMatthew G. Knepley       batchSize = numBlocks * blockSize;
21529566063dSJacob Faibussowitsch       PetscCall(PetscFESetTileSizes(fe, blockSize, numBlocks, batchSize, numBatches));
215373d901b8SMatthew G. Knepley       numChunks = numCells / (numBatches * batchSize);
215473d901b8SMatthew G. Knepley       Ne        = numChunks * numBatches * batchSize;
215573d901b8SMatthew G. Knepley       Nr        = numCells % (numBatches * batchSize);
215673d901b8SMatthew G. Knepley       offset    = numCells - Nr;
215748a46eb9SPierre Jolivet       if (!affineQuad) PetscCall(DMFieldCreateFEGeom(coordField, cellIS, q, PETSC_FALSE, &cgeomFEM));
21589566063dSJacob Faibussowitsch       PetscCall(PetscFEGeomGetChunk(cgeomFEM, 0, offset, &chunkGeom));
21599566063dSJacob Faibussowitsch       PetscCall(PetscFEIntegrate(prob, f, Ne, chunkGeom, u, probAux, a, cintegral));
21609566063dSJacob Faibussowitsch       PetscCall(PetscFEGeomGetChunk(cgeomFEM, offset, numCells, &chunkGeom));
21619566063dSJacob Faibussowitsch       PetscCall(PetscFEIntegrate(prob, f, Nr, chunkGeom, &u[offset * totDim], probAux, &a[offset * totDimAux], &cintegral[offset * Nf]));
21629566063dSJacob Faibussowitsch       PetscCall(PetscFEGeomRestoreChunk(cgeomFEM, offset, numCells, &chunkGeom));
216348a46eb9SPierre Jolivet       if (!affineQuad) PetscCall(PetscFEGeomDestroy(&cgeomFEM));
2164c1f031eeSMatthew G. Knepley     } else if (id == PETSCFV_CLASSID) {
2165c1f031eeSMatthew G. Knepley       PetscInt       foff;
2166420e96edSMatthew G. Knepley       PetscPointFunc obj_func;
2167b69edc29SMatthew G. Knepley       PetscScalar    lint;
2168c1f031eeSMatthew G. Knepley 
21699566063dSJacob Faibussowitsch       PetscCall(PetscDSGetObjective(prob, f, &obj_func));
21709566063dSJacob Faibussowitsch       PetscCall(PetscDSGetFieldOffset(prob, f, &foff));
2171c1f031eeSMatthew G. Knepley       if (obj_func) {
2172c1f031eeSMatthew G. Knepley         for (c = 0; c < numCells; ++c) {
2173b5a3613cSMatthew G. Knepley           PetscScalar *u_x;
2174b5a3613cSMatthew G. Knepley 
21759566063dSJacob Faibussowitsch           PetscCall(DMPlexPointLocalRead(dmGrad, c, lgrad, &u_x));
2176338f77d5SMatthew G. Knepley           obj_func(dim, Nf, NfAux, uOff, uOff_x, &u[totDim * c + foff], NULL, u_x, aOff, NULL, &a[totDimAux * c], NULL, NULL, 0.0, cgeomFVM[c].centroid, numConstants, constants, &lint);
2177338f77d5SMatthew G. Knepley           cintegral[c * Nf + f] += PetscRealPart(lint) * cgeomFVM[c].volume;
217873d901b8SMatthew G. Knepley         }
2179c1f031eeSMatthew G. Knepley       }
218063a3b9bcSJacob Faibussowitsch     } else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, f);
2181c1f031eeSMatthew G. Knepley   }
2182338f77d5SMatthew G. Knepley   /* Cleanup data arrays */
2183b5a3613cSMatthew G. Knepley   if (useFVM) {
21849566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayRead(locGrad, &lgrad));
21859566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayRead(cellGeometryFVM, (const PetscScalar **)&cgeomFVM));
21869566063dSJacob Faibussowitsch     PetscCall(DMRestoreLocalVector(dmGrad, &locGrad));
21879566063dSJacob Faibussowitsch     PetscCall(VecDestroy(&faceGeometryFVM));
21889566063dSJacob Faibussowitsch     PetscCall(VecDestroy(&cellGeometryFVM));
21899566063dSJacob Faibussowitsch     PetscCall(DMDestroy(&dmGrad));
2190b5a3613cSMatthew G. Knepley   }
21919566063dSJacob Faibussowitsch   if (dmAux) PetscCall(PetscFree(a));
21929566063dSJacob Faibussowitsch   PetscCall(PetscFree(u));
2193338f77d5SMatthew G. Knepley   /* Cleanup */
219448a46eb9SPierre Jolivet   if (affineQuad) PetscCall(PetscFEGeomDestroy(&cgeomFEM));
21959566063dSJacob Faibussowitsch   PetscCall(PetscQuadratureDestroy(&affineQuad));
21969566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&cellIS));
21979566063dSJacob Faibussowitsch   PetscCall(DMRestoreLocalVector(dm, &locX));
21983ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2199338f77d5SMatthew G. Knepley }
2200338f77d5SMatthew G. Knepley 
2201338f77d5SMatthew G. Knepley /*@
2202338f77d5SMatthew G. Knepley   DMPlexComputeIntegralFEM - Form the integral over the domain from the global input X using pointwise functions specified by the user
2203338f77d5SMatthew G. Knepley 
2204338f77d5SMatthew G. Knepley   Input Parameters:
2205338f77d5SMatthew G. Knepley + dm - The mesh
2206338f77d5SMatthew G. Knepley . X  - Global input vector
2207338f77d5SMatthew G. Knepley - user - The user context
2208338f77d5SMatthew G. Knepley 
2209338f77d5SMatthew G. Knepley   Output Parameter:
2210338f77d5SMatthew G. Knepley . integral - Integral for each field
2211338f77d5SMatthew G. Knepley 
2212338f77d5SMatthew G. Knepley   Level: developer
2213338f77d5SMatthew G. Knepley 
2214a1cb98faSBarry Smith .seealso: [](chapter_unstructured), `DM`, `DMPLEX`, `DMPlexSNESComputeResidualFEM()`
2215338f77d5SMatthew G. Knepley @*/
2216d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeIntegralFEM(DM dm, Vec X, PetscScalar *integral, void *user)
2217d71ae5a4SJacob Faibussowitsch {
2218338f77d5SMatthew G. Knepley   DM_Plex     *mesh = (DM_Plex *)dm->data;
2219b8feb594SMatthew G. Knepley   PetscScalar *cintegral, *lintegral;
2220412e9a14SMatthew G. Knepley   PetscInt     Nf, f, cellHeight, cStart, cEnd, cell;
2221338f77d5SMatthew G. Knepley 
2222338f77d5SMatthew G. Knepley   PetscFunctionBegin;
2223338f77d5SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
2224338f77d5SMatthew G. Knepley   PetscValidHeaderSpecific(X, VEC_CLASSID, 2);
2225dadcf809SJacob Faibussowitsch   PetscValidScalarPointer(integral, 3);
22269566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(DMPLEX_IntegralFEM, dm, 0, 0, 0));
22279566063dSJacob Faibussowitsch   PetscCall(DMGetNumFields(dm, &Nf));
22289566063dSJacob Faibussowitsch   PetscCall(DMPlexGetVTKCellHeight(dm, &cellHeight));
22299566063dSJacob Faibussowitsch   PetscCall(DMPlexGetSimplexOrBoxCells(dm, cellHeight, &cStart, &cEnd));
2230338f77d5SMatthew G. Knepley   /* TODO Introduce a loop over large chunks (right now this is a single chunk) */
22319566063dSJacob Faibussowitsch   PetscCall(PetscCalloc2(Nf, &lintegral, (cEnd - cStart) * Nf, &cintegral));
22329566063dSJacob Faibussowitsch   PetscCall(DMPlexComputeIntegral_Internal(dm, X, cStart, cEnd, cintegral, user));
2233338f77d5SMatthew G. Knepley   /* Sum up values */
2234338f77d5SMatthew G. Knepley   for (cell = cStart; cell < cEnd; ++cell) {
2235338f77d5SMatthew G. Knepley     const PetscInt c = cell - cStart;
2236338f77d5SMatthew G. Knepley 
22379566063dSJacob Faibussowitsch     if (mesh->printFEM > 1) PetscCall(DMPrintCellVector(cell, "Cell Integral", Nf, &cintegral[c * Nf]));
2238b8feb594SMatthew G. Knepley     for (f = 0; f < Nf; ++f) lintegral[f] += cintegral[c * Nf + f];
2239338f77d5SMatthew G. Knepley   }
22401c2dc1cbSBarry Smith   PetscCall(MPIU_Allreduce(lintegral, integral, Nf, MPIU_SCALAR, MPIU_SUM, PetscObjectComm((PetscObject)dm)));
224173d901b8SMatthew G. Knepley   if (mesh->printFEM) {
22429566063dSJacob Faibussowitsch     PetscCall(PetscPrintf(PetscObjectComm((PetscObject)dm), "Integral:"));
22439566063dSJacob Faibussowitsch     for (f = 0; f < Nf; ++f) PetscCall(PetscPrintf(PetscObjectComm((PetscObject)dm), " %g", (double)PetscRealPart(integral[f])));
22449566063dSJacob Faibussowitsch     PetscCall(PetscPrintf(PetscObjectComm((PetscObject)dm), "\n"));
224573d901b8SMatthew G. Knepley   }
22469566063dSJacob Faibussowitsch   PetscCall(PetscFree2(lintegral, cintegral));
22479566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(DMPLEX_IntegralFEM, dm, 0, 0, 0));
22483ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2249338f77d5SMatthew G. Knepley }
2250338f77d5SMatthew G. Knepley 
2251338f77d5SMatthew G. Knepley /*@
2252338f77d5SMatthew G. Knepley   DMPlexComputeCellwiseIntegralFEM - Form the vector of cellwise integrals F from the global input X using pointwise functions specified by the user
2253338f77d5SMatthew G. Knepley 
2254338f77d5SMatthew G. Knepley   Input Parameters:
2255338f77d5SMatthew G. Knepley + dm - The mesh
2256338f77d5SMatthew G. Knepley . X  - Global input vector
2257338f77d5SMatthew G. Knepley - user - The user context
2258338f77d5SMatthew G. Knepley 
2259338f77d5SMatthew G. Knepley   Output Parameter:
2260338f77d5SMatthew G. Knepley . integral - Cellwise integrals for each field
2261338f77d5SMatthew G. Knepley 
2262338f77d5SMatthew G. Knepley   Level: developer
2263338f77d5SMatthew G. Knepley 
2264a1cb98faSBarry Smith .seealso: [](chapter_unstructured), `DM`, `DMPLEX`, `DMPlexSNESComputeResidualFEM()`
2265338f77d5SMatthew G. Knepley @*/
2266d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeCellwiseIntegralFEM(DM dm, Vec X, Vec F, void *user)
2267d71ae5a4SJacob Faibussowitsch {
2268338f77d5SMatthew G. Knepley   DM_Plex     *mesh = (DM_Plex *)dm->data;
2269338f77d5SMatthew G. Knepley   DM           dmF;
2270338f77d5SMatthew G. Knepley   PetscSection sectionF;
2271338f77d5SMatthew G. Knepley   PetscScalar *cintegral, *af;
2272412e9a14SMatthew G. Knepley   PetscInt     Nf, f, cellHeight, cStart, cEnd, cell;
2273338f77d5SMatthew G. Knepley 
2274338f77d5SMatthew G. Knepley   PetscFunctionBegin;
2275338f77d5SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
2276338f77d5SMatthew G. Knepley   PetscValidHeaderSpecific(X, VEC_CLASSID, 2);
2277338f77d5SMatthew G. Knepley   PetscValidHeaderSpecific(F, VEC_CLASSID, 3);
22789566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(DMPLEX_IntegralFEM, dm, 0, 0, 0));
22799566063dSJacob Faibussowitsch   PetscCall(DMGetNumFields(dm, &Nf));
22809566063dSJacob Faibussowitsch   PetscCall(DMPlexGetVTKCellHeight(dm, &cellHeight));
22819566063dSJacob Faibussowitsch   PetscCall(DMPlexGetSimplexOrBoxCells(dm, cellHeight, &cStart, &cEnd));
2282338f77d5SMatthew G. Knepley   /* TODO Introduce a loop over large chunks (right now this is a single chunk) */
22839566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1((cEnd - cStart) * Nf, &cintegral));
22849566063dSJacob Faibussowitsch   PetscCall(DMPlexComputeIntegral_Internal(dm, X, cStart, cEnd, cintegral, user));
2285338f77d5SMatthew G. Knepley   /* Put values in F*/
22869566063dSJacob Faibussowitsch   PetscCall(VecGetDM(F, &dmF));
22879566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dmF, &sectionF));
22889566063dSJacob Faibussowitsch   PetscCall(VecGetArray(F, &af));
2289338f77d5SMatthew G. Knepley   for (cell = cStart; cell < cEnd; ++cell) {
2290338f77d5SMatthew G. Knepley     const PetscInt c = cell - cStart;
2291338f77d5SMatthew G. Knepley     PetscInt       dof, off;
2292338f77d5SMatthew G. Knepley 
22939566063dSJacob Faibussowitsch     if (mesh->printFEM > 1) PetscCall(DMPrintCellVector(cell, "Cell Integral", Nf, &cintegral[c * Nf]));
22949566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetDof(sectionF, cell, &dof));
22959566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetOffset(sectionF, cell, &off));
229663a3b9bcSJacob Faibussowitsch     PetscCheck(dof == Nf, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "The number of cell dofs %" PetscInt_FMT " != %" PetscInt_FMT, dof, Nf);
2297338f77d5SMatthew G. Knepley     for (f = 0; f < Nf; ++f) af[off + f] = cintegral[c * Nf + f];
2298338f77d5SMatthew G. Knepley   }
22999566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(F, &af));
23009566063dSJacob Faibussowitsch   PetscCall(PetscFree(cintegral));
23019566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(DMPLEX_IntegralFEM, dm, 0, 0, 0));
23023ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
230373d901b8SMatthew G. Knepley }
230473d901b8SMatthew G. Knepley 
2305d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexComputeBdIntegral_Internal(DM dm, Vec locX, IS pointIS, void (*func)(PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], PetscReal, const PetscReal[], const PetscReal[], PetscInt, const PetscScalar[], PetscScalar[]), PetscScalar *fintegral, void *user)
2306d71ae5a4SJacob Faibussowitsch {
23079b6f715bSMatthew G. Knepley   DM                 plex = NULL, plexA = NULL;
2308a6e0b375SMatthew G. Knepley   DMEnclosureType    encAux;
23099b6f715bSMatthew G. Knepley   PetscDS            prob, probAux       = NULL;
23109b6f715bSMatthew G. Knepley   PetscSection       section, sectionAux = NULL;
23119b6f715bSMatthew G. Knepley   Vec                locA = NULL;
23129b6f715bSMatthew G. Knepley   DMField            coordField;
23139b6f715bSMatthew G. Knepley   PetscInt           Nf, totDim, *uOff, *uOff_x;
23149b6f715bSMatthew G. Knepley   PetscInt           NfAux = 0, totDimAux = 0, *aOff = NULL;
23159b6f715bSMatthew G. Knepley   PetscScalar       *u, *a = NULL;
231664c72086SMatthew G. Knepley   const PetscScalar *constants;
23179b6f715bSMatthew G. Knepley   PetscInt           numConstants, f;
231864c72086SMatthew G. Knepley 
231964c72086SMatthew G. Knepley   PetscFunctionBegin;
23209566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateField(dm, &coordField));
23219566063dSJacob Faibussowitsch   PetscCall(DMConvert(dm, DMPLEX, &plex));
23229566063dSJacob Faibussowitsch   PetscCall(DMGetDS(dm, &prob));
23239566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dm, &section));
23249566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetNumFields(section, &Nf));
232564c72086SMatthew G. Knepley   /* Determine which discretizations we have */
23269b6f715bSMatthew G. Knepley   for (f = 0; f < Nf; ++f) {
232764c72086SMatthew G. Knepley     PetscObject  obj;
232864c72086SMatthew G. Knepley     PetscClassId id;
232964c72086SMatthew G. Knepley 
23309566063dSJacob Faibussowitsch     PetscCall(PetscDSGetDiscretization(prob, f, &obj));
23319566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetClassId(obj, &id));
233263a3b9bcSJacob Faibussowitsch     PetscCheck(id != PETSCFV_CLASSID, PetscObjectComm((PetscObject)dm), PETSC_ERR_SUP, "Not supported for FVM (field %" PetscInt_FMT ")", f);
233364c72086SMatthew G. Knepley   }
233464c72086SMatthew G. Knepley   /* Read DS information */
23359566063dSJacob Faibussowitsch   PetscCall(PetscDSGetTotalDimension(prob, &totDim));
23369566063dSJacob Faibussowitsch   PetscCall(PetscDSGetComponentOffsets(prob, &uOff));
23379566063dSJacob Faibussowitsch   PetscCall(PetscDSGetComponentDerivativeOffsets(prob, &uOff_x));
23389566063dSJacob Faibussowitsch   PetscCall(PetscDSGetConstants(prob, &numConstants, &constants));
233964c72086SMatthew G. Knepley   /* Read Auxiliary DS information */
23409566063dSJacob Faibussowitsch   PetscCall(DMGetAuxiliaryVec(dm, NULL, 0, 0, &locA));
23419b6f715bSMatthew G. Knepley   if (locA) {
23429b6f715bSMatthew G. Knepley     DM dmAux;
23439b6f715bSMatthew G. Knepley 
23449566063dSJacob Faibussowitsch     PetscCall(VecGetDM(locA, &dmAux));
23459566063dSJacob Faibussowitsch     PetscCall(DMGetEnclosureRelation(dmAux, dm, &encAux));
23469566063dSJacob Faibussowitsch     PetscCall(DMConvert(dmAux, DMPLEX, &plexA));
23479566063dSJacob Faibussowitsch     PetscCall(DMGetDS(dmAux, &probAux));
23489566063dSJacob Faibussowitsch     PetscCall(PetscDSGetNumFields(probAux, &NfAux));
23499566063dSJacob Faibussowitsch     PetscCall(DMGetLocalSection(dmAux, &sectionAux));
23509566063dSJacob Faibussowitsch     PetscCall(PetscDSGetTotalDimension(probAux, &totDimAux));
23519566063dSJacob Faibussowitsch     PetscCall(PetscDSGetComponentOffsets(probAux, &aOff));
235264c72086SMatthew G. Knepley   }
23539b6f715bSMatthew G. Knepley   /* Integrate over points */
23549b6f715bSMatthew G. Knepley   {
23559b6f715bSMatthew G. Knepley     PetscFEGeom    *fgeom, *chunkGeom = NULL;
2356b7260050SToby Isaac     PetscInt        maxDegree;
23579b6f715bSMatthew G. Knepley     PetscQuadrature qGeom = NULL;
23589b6f715bSMatthew G. Knepley     const PetscInt *points;
23599b6f715bSMatthew G. Knepley     PetscInt        numFaces, face, Nq, field;
23609b6f715bSMatthew G. Knepley     PetscInt        numChunks, chunkSize, chunk, Nr, offset;
236164c72086SMatthew G. Knepley 
23629566063dSJacob Faibussowitsch     PetscCall(ISGetLocalSize(pointIS, &numFaces));
23639566063dSJacob Faibussowitsch     PetscCall(ISGetIndices(pointIS, &points));
23649566063dSJacob Faibussowitsch     PetscCall(PetscCalloc2(numFaces * totDim, &u, locA ? numFaces * totDimAux : 0, &a));
23659566063dSJacob Faibussowitsch     PetscCall(DMFieldGetDegree(coordField, pointIS, NULL, &maxDegree));
236664c72086SMatthew G. Knepley     for (field = 0; field < Nf; ++field) {
236764c72086SMatthew G. Knepley       PetscFE fe;
236864c72086SMatthew G. Knepley 
23699566063dSJacob Faibussowitsch       PetscCall(PetscDSGetDiscretization(prob, field, (PetscObject *)&fe));
23709566063dSJacob Faibussowitsch       if (maxDegree <= 1) PetscCall(DMFieldCreateDefaultQuadrature(coordField, pointIS, &qGeom));
23719b6f715bSMatthew G. Knepley       if (!qGeom) {
23729566063dSJacob Faibussowitsch         PetscCall(PetscFEGetFaceQuadrature(fe, &qGeom));
23739566063dSJacob Faibussowitsch         PetscCall(PetscObjectReference((PetscObject)qGeom));
23749b6f715bSMatthew G. Knepley       }
23759566063dSJacob Faibussowitsch       PetscCall(PetscQuadratureGetData(qGeom, NULL, NULL, &Nq, NULL, NULL));
23769566063dSJacob Faibussowitsch       PetscCall(DMPlexGetFEGeom(coordField, pointIS, qGeom, PETSC_TRUE, &fgeom));
23779b6f715bSMatthew G. Knepley       for (face = 0; face < numFaces; ++face) {
2378f15274beSMatthew Knepley         const PetscInt point = points[face], *support;
23799b6f715bSMatthew G. Knepley         PetscScalar   *x     = NULL;
2380f15274beSMatthew Knepley         PetscInt       i;
23819b6f715bSMatthew G. Knepley 
23829566063dSJacob Faibussowitsch         PetscCall(DMPlexGetSupport(dm, point, &support));
23839566063dSJacob Faibussowitsch         PetscCall(DMPlexVecGetClosure(plex, section, locX, support[0], NULL, &x));
23849b6f715bSMatthew G. Knepley         for (i = 0; i < totDim; ++i) u[face * totDim + i] = x[i];
23859566063dSJacob Faibussowitsch         PetscCall(DMPlexVecRestoreClosure(plex, section, locX, support[0], NULL, &x));
23869b6f715bSMatthew G. Knepley         if (locA) {
23879b6f715bSMatthew G. Knepley           PetscInt subp;
23889566063dSJacob Faibussowitsch           PetscCall(DMGetEnclosurePoint(plexA, dm, encAux, support[0], &subp));
23899566063dSJacob Faibussowitsch           PetscCall(DMPlexVecGetClosure(plexA, sectionAux, locA, subp, NULL, &x));
23909b6f715bSMatthew G. Knepley           for (i = 0; i < totDimAux; ++i) a[f * totDimAux + i] = x[i];
23919566063dSJacob Faibussowitsch           PetscCall(DMPlexVecRestoreClosure(plexA, sectionAux, locA, subp, NULL, &x));
23929b6f715bSMatthew G. Knepley         }
23939b6f715bSMatthew G. Knepley       }
23949b6f715bSMatthew G. Knepley       /* Get blocking */
23959b6f715bSMatthew G. Knepley       {
23969b6f715bSMatthew G. Knepley         PetscQuadrature q;
23979b6f715bSMatthew G. Knepley         PetscInt        numBatches, batchSize, numBlocks, blockSize;
23989b6f715bSMatthew G. Knepley         PetscInt        Nq, Nb;
23999b6f715bSMatthew G. Knepley 
24009566063dSJacob Faibussowitsch         PetscCall(PetscFEGetTileSizes(fe, NULL, &numBlocks, NULL, &numBatches));
24019566063dSJacob Faibussowitsch         PetscCall(PetscFEGetQuadrature(fe, &q));
24029566063dSJacob Faibussowitsch         PetscCall(PetscQuadratureGetData(q, NULL, NULL, &Nq, NULL, NULL));
24039566063dSJacob Faibussowitsch         PetscCall(PetscFEGetDimension(fe, &Nb));
240464c72086SMatthew G. Knepley         blockSize = Nb * Nq;
240564c72086SMatthew G. Knepley         batchSize = numBlocks * blockSize;
24069b6f715bSMatthew G. Knepley         chunkSize = numBatches * batchSize;
24079566063dSJacob Faibussowitsch         PetscCall(PetscFESetTileSizes(fe, blockSize, numBlocks, batchSize, numBatches));
24089b6f715bSMatthew G. Knepley         numChunks = numFaces / chunkSize;
24099b6f715bSMatthew G. Knepley         Nr        = numFaces % chunkSize;
241064c72086SMatthew G. Knepley         offset    = numFaces - Nr;
241164c72086SMatthew G. Knepley       }
24129b6f715bSMatthew G. Knepley       /* Do integration for each field */
24139b6f715bSMatthew G. Knepley       for (chunk = 0; chunk < numChunks; ++chunk) {
24149566063dSJacob Faibussowitsch         PetscCall(PetscFEGeomGetChunk(fgeom, chunk * chunkSize, (chunk + 1) * chunkSize, &chunkGeom));
24159566063dSJacob Faibussowitsch         PetscCall(PetscFEIntegrateBd(prob, field, func, chunkSize, chunkGeom, u, probAux, a, fintegral));
24169566063dSJacob Faibussowitsch         PetscCall(PetscFEGeomRestoreChunk(fgeom, 0, offset, &chunkGeom));
241764c72086SMatthew G. Knepley       }
24189566063dSJacob Faibussowitsch       PetscCall(PetscFEGeomGetChunk(fgeom, offset, numFaces, &chunkGeom));
24199566063dSJacob Faibussowitsch       PetscCall(PetscFEIntegrateBd(prob, field, func, Nr, chunkGeom, &u[offset * totDim], probAux, a ? &a[offset * totDimAux] : NULL, &fintegral[offset * Nf]));
24209566063dSJacob Faibussowitsch       PetscCall(PetscFEGeomRestoreChunk(fgeom, offset, numFaces, &chunkGeom));
242164c72086SMatthew G. Knepley       /* Cleanup data arrays */
24229566063dSJacob Faibussowitsch       PetscCall(DMPlexRestoreFEGeom(coordField, pointIS, qGeom, PETSC_TRUE, &fgeom));
24239566063dSJacob Faibussowitsch       PetscCall(PetscQuadratureDestroy(&qGeom));
24249566063dSJacob Faibussowitsch       PetscCall(PetscFree2(u, a));
24259566063dSJacob Faibussowitsch       PetscCall(ISRestoreIndices(pointIS, &points));
242664c72086SMatthew G. Knepley     }
242764c72086SMatthew G. Knepley   }
24289566063dSJacob Faibussowitsch   if (plex) PetscCall(DMDestroy(&plex));
24299566063dSJacob Faibussowitsch   if (plexA) PetscCall(DMDestroy(&plexA));
24303ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
24319b6f715bSMatthew G. Knepley }
24329b6f715bSMatthew G. Knepley 
24339b6f715bSMatthew G. Knepley /*@
24349b6f715bSMatthew G. Knepley   DMPlexComputeBdIntegral - Form the integral over the specified boundary from the global input X using pointwise functions specified by the user
24359b6f715bSMatthew G. Knepley 
24369b6f715bSMatthew G. Knepley   Input Parameters:
24379b6f715bSMatthew G. Knepley + dm      - The mesh
24389b6f715bSMatthew G. Knepley . X       - Global input vector
2439a1cb98faSBarry Smith . label   - The boundary `DMLabel`
2440a1cb98faSBarry Smith . numVals - The number of label values to use, or `PETSC_DETERMINE` for all values
2441a1cb98faSBarry Smith . vals    - The label values to use, or NULL for all values
244267b8a455SSatish Balay . func    - The function to integrate along the boundary
24439b6f715bSMatthew G. Knepley - user    - The user context
24449b6f715bSMatthew G. Knepley 
24459b6f715bSMatthew G. Knepley   Output Parameter:
24469b6f715bSMatthew G. Knepley . integral - Integral for each field
24479b6f715bSMatthew G. Knepley 
24489b6f715bSMatthew G. Knepley   Level: developer
24499b6f715bSMatthew G. Knepley 
2450a1cb98faSBarry Smith .seealso: [](chapter_unstructured), `DM`, `DMPLEX`, `DMPlexComputeIntegralFEM()`, `DMPlexComputeBdResidualFEM()`
24519b6f715bSMatthew G. Knepley @*/
2452d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeBdIntegral(DM dm, Vec X, DMLabel label, PetscInt numVals, const PetscInt vals[], void (*func)(PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], PetscReal, const PetscReal[], const PetscReal[], PetscInt, const PetscScalar[], PetscScalar[]), PetscScalar *integral, void *user)
2453d71ae5a4SJacob Faibussowitsch {
24549b6f715bSMatthew G. Knepley   Vec          locX;
24559b6f715bSMatthew G. Knepley   PetscSection section;
24569b6f715bSMatthew G. Knepley   DMLabel      depthLabel;
24579b6f715bSMatthew G. Knepley   IS           facetIS;
24589b6f715bSMatthew G. Knepley   PetscInt     dim, Nf, f, v;
24599b6f715bSMatthew G. Knepley 
24609b6f715bSMatthew G. Knepley   PetscFunctionBegin;
24619b6f715bSMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
24629b6f715bSMatthew G. Knepley   PetscValidHeaderSpecific(X, VEC_CLASSID, 2);
24639b6f715bSMatthew G. Knepley   PetscValidPointer(label, 3);
2464dadcf809SJacob Faibussowitsch   if (vals) PetscValidIntPointer(vals, 5);
2465dadcf809SJacob Faibussowitsch   PetscValidScalarPointer(integral, 7);
24669566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(DMPLEX_IntegralFEM, dm, 0, 0, 0));
24679566063dSJacob Faibussowitsch   PetscCall(DMPlexGetDepthLabel(dm, &depthLabel));
24689566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dm, &dim));
24699566063dSJacob Faibussowitsch   PetscCall(DMLabelGetStratumIS(depthLabel, dim - 1, &facetIS));
24709566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dm, &section));
24719566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetNumFields(section, &Nf));
24729b6f715bSMatthew G. Knepley   /* Get local solution with boundary values */
24739566063dSJacob Faibussowitsch   PetscCall(DMGetLocalVector(dm, &locX));
24749566063dSJacob Faibussowitsch   PetscCall(DMPlexInsertBoundaryValues(dm, PETSC_TRUE, locX, 0.0, NULL, NULL, NULL));
24759566063dSJacob Faibussowitsch   PetscCall(DMGlobalToLocalBegin(dm, X, INSERT_VALUES, locX));
24769566063dSJacob Faibussowitsch   PetscCall(DMGlobalToLocalEnd(dm, X, INSERT_VALUES, locX));
24779b6f715bSMatthew G. Knepley   /* Loop over label values */
24789566063dSJacob Faibussowitsch   PetscCall(PetscArrayzero(integral, Nf));
24799b6f715bSMatthew G. Knepley   for (v = 0; v < numVals; ++v) {
24809b6f715bSMatthew G. Knepley     IS           pointIS;
24819b6f715bSMatthew G. Knepley     PetscInt     numFaces, face;
24829b6f715bSMatthew G. Knepley     PetscScalar *fintegral;
24839b6f715bSMatthew G. Knepley 
24849566063dSJacob Faibussowitsch     PetscCall(DMLabelGetStratumIS(label, vals[v], &pointIS));
24859b6f715bSMatthew G. Knepley     if (!pointIS) continue; /* No points with that id on this process */
24869b6f715bSMatthew G. Knepley     {
24879b6f715bSMatthew G. Knepley       IS isectIS;
24889b6f715bSMatthew G. Knepley 
24899b6f715bSMatthew G. Knepley       /* TODO: Special cases of ISIntersect where it is quick to check a priori if one is a superset of the other */
24909566063dSJacob Faibussowitsch       PetscCall(ISIntersect_Caching_Internal(facetIS, pointIS, &isectIS));
24919566063dSJacob Faibussowitsch       PetscCall(ISDestroy(&pointIS));
24929b6f715bSMatthew G. Knepley       pointIS = isectIS;
24939b6f715bSMatthew G. Knepley     }
24949566063dSJacob Faibussowitsch     PetscCall(ISGetLocalSize(pointIS, &numFaces));
24959566063dSJacob Faibussowitsch     PetscCall(PetscCalloc1(numFaces * Nf, &fintegral));
24969566063dSJacob Faibussowitsch     PetscCall(DMPlexComputeBdIntegral_Internal(dm, locX, pointIS, func, fintegral, user));
24979b6f715bSMatthew G. Knepley     /* Sum point contributions into integral */
24989371c9d4SSatish Balay     for (f = 0; f < Nf; ++f)
24999371c9d4SSatish Balay       for (face = 0; face < numFaces; ++face) integral[f] += fintegral[face * Nf + f];
25009566063dSJacob Faibussowitsch     PetscCall(PetscFree(fintegral));
25019566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&pointIS));
25029b6f715bSMatthew G. Knepley   }
25039566063dSJacob Faibussowitsch   PetscCall(DMRestoreLocalVector(dm, &locX));
25049566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&facetIS));
25059566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(DMPLEX_IntegralFEM, dm, 0, 0, 0));
25063ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
250764c72086SMatthew G. Knepley }
250864c72086SMatthew G. Knepley 
2509d69c5d34SMatthew G. Knepley /*@
2510a1cb98faSBarry Smith   DMPlexComputeInterpolatorNested - Form the local portion of the interpolation matrix I from the coarse `DM` to a uniformly refined `DM`.
2511d69c5d34SMatthew G. Knepley 
2512d69c5d34SMatthew G. Knepley   Input Parameters:
2513cf51de39SMatthew G. Knepley + dmc  - The coarse mesh
2514cf51de39SMatthew G. Knepley . dmf  - The fine mesh
2515cf51de39SMatthew G. Knepley . isRefined - Flag indicating regular refinement, rather than the same topology
2516d69c5d34SMatthew G. Knepley - user - The user context
2517d69c5d34SMatthew G. Knepley 
2518d69c5d34SMatthew G. Knepley   Output Parameter:
2519934789fcSMatthew G. Knepley . In  - The interpolation matrix
2520d69c5d34SMatthew G. Knepley 
2521d69c5d34SMatthew G. Knepley   Level: developer
2522d69c5d34SMatthew G. Knepley 
2523a1cb98faSBarry Smith .seealso: [](chapter_unstructured), `DM`, `DMPLEX`, `DMPlexComputeInterpolatorGeneral()`, `DMPlexComputeJacobianFEM()`
2524d69c5d34SMatthew G. Knepley @*/
2525d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeInterpolatorNested(DM dmc, DM dmf, PetscBool isRefined, Mat In, void *user)
2526d71ae5a4SJacob Faibussowitsch {
2527d69c5d34SMatthew G. Knepley   DM_Plex     *mesh = (DM_Plex *)dmc->data;
2528d69c5d34SMatthew G. Knepley   const char  *name = "Interpolator";
2529d69c5d34SMatthew G. Knepley   PetscFE     *feRef;
253097c42addSMatthew G. Knepley   PetscFV     *fvRef;
2531d69c5d34SMatthew G. Knepley   PetscSection fsection, fglobalSection;
2532d69c5d34SMatthew G. Knepley   PetscSection csection, cglobalSection;
2533d69c5d34SMatthew G. Knepley   PetscScalar *elemMat;
2534485ad865SMatthew G. Knepley   PetscInt     dim, Nf, f, fieldI, fieldJ, offsetI, offsetJ, cStart, cEnd, c;
25352ea9c922SToby Isaac   PetscInt     cTotDim = 0, rTotDim = 0;
2536d69c5d34SMatthew G. Knepley 
2537d69c5d34SMatthew G. Knepley   PetscFunctionBegin;
25389566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(DMPLEX_InterpolatorFEM, dmc, dmf, 0, 0));
25399566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dmf, &dim));
25409566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dmf, &fsection));
25419566063dSJacob Faibussowitsch   PetscCall(DMGetGlobalSection(dmf, &fglobalSection));
25429566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dmc, &csection));
25439566063dSJacob Faibussowitsch   PetscCall(DMGetGlobalSection(dmc, &cglobalSection));
25449566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetNumFields(fsection, &Nf));
25459566063dSJacob Faibussowitsch   PetscCall(DMPlexGetSimplexOrBoxCells(dmc, 0, &cStart, &cEnd));
25469566063dSJacob Faibussowitsch   PetscCall(PetscCalloc2(Nf, &feRef, Nf, &fvRef));
2547d69c5d34SMatthew G. Knepley   for (f = 0; f < Nf; ++f) {
25482ea9c922SToby Isaac     PetscObject  obj, objc;
25492ea9c922SToby Isaac     PetscClassId id, idc;
25502ea9c922SToby Isaac     PetscInt     rNb = 0, Nc = 0, cNb = 0;
2551d69c5d34SMatthew G. Knepley 
25529566063dSJacob Faibussowitsch     PetscCall(DMGetField(dmf, f, NULL, &obj));
25539566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetClassId(obj, &id));
255497c42addSMatthew G. Knepley     if (id == PETSCFE_CLASSID) {
255597c42addSMatthew G. Knepley       PetscFE fe = (PetscFE)obj;
255697c42addSMatthew G. Knepley 
2557cf51de39SMatthew G. Knepley       if (isRefined) {
25589566063dSJacob Faibussowitsch         PetscCall(PetscFERefine(fe, &feRef[f]));
2559cf51de39SMatthew G. Knepley       } else {
25609566063dSJacob Faibussowitsch         PetscCall(PetscObjectReference((PetscObject)fe));
2561cf51de39SMatthew G. Knepley         feRef[f] = fe;
2562cf51de39SMatthew G. Knepley       }
25639566063dSJacob Faibussowitsch       PetscCall(PetscFEGetDimension(feRef[f], &rNb));
25649566063dSJacob Faibussowitsch       PetscCall(PetscFEGetNumComponents(fe, &Nc));
256597c42addSMatthew G. Knepley     } else if (id == PETSCFV_CLASSID) {
256697c42addSMatthew G. Knepley       PetscFV        fv = (PetscFV)obj;
256797c42addSMatthew G. Knepley       PetscDualSpace Q;
256897c42addSMatthew G. Knepley 
2569cf51de39SMatthew G. Knepley       if (isRefined) {
25709566063dSJacob Faibussowitsch         PetscCall(PetscFVRefine(fv, &fvRef[f]));
2571cf51de39SMatthew G. Knepley       } else {
25729566063dSJacob Faibussowitsch         PetscCall(PetscObjectReference((PetscObject)fv));
2573cf51de39SMatthew G. Knepley         fvRef[f] = fv;
2574cf51de39SMatthew G. Knepley       }
25759566063dSJacob Faibussowitsch       PetscCall(PetscFVGetDualSpace(fvRef[f], &Q));
25769566063dSJacob Faibussowitsch       PetscCall(PetscDualSpaceGetDimension(Q, &rNb));
25779566063dSJacob Faibussowitsch       PetscCall(PetscFVGetDualSpace(fv, &Q));
25789566063dSJacob Faibussowitsch       PetscCall(PetscFVGetNumComponents(fv, &Nc));
257997c42addSMatthew G. Knepley     }
25809566063dSJacob Faibussowitsch     PetscCall(DMGetField(dmc, f, NULL, &objc));
25819566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetClassId(objc, &idc));
25822ea9c922SToby Isaac     if (idc == PETSCFE_CLASSID) {
25832ea9c922SToby Isaac       PetscFE fe = (PetscFE)objc;
25842ea9c922SToby Isaac 
25859566063dSJacob Faibussowitsch       PetscCall(PetscFEGetDimension(fe, &cNb));
25862ea9c922SToby Isaac     } else if (id == PETSCFV_CLASSID) {
25872ea9c922SToby Isaac       PetscFV        fv = (PetscFV)obj;
25882ea9c922SToby Isaac       PetscDualSpace Q;
25892ea9c922SToby Isaac 
25909566063dSJacob Faibussowitsch       PetscCall(PetscFVGetDualSpace(fv, &Q));
25919566063dSJacob Faibussowitsch       PetscCall(PetscDualSpaceGetDimension(Q, &cNb));
2592d69c5d34SMatthew G. Knepley     }
25932ea9c922SToby Isaac     rTotDim += rNb;
25942ea9c922SToby Isaac     cTotDim += cNb;
25952ea9c922SToby Isaac   }
25969566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(rTotDim * cTotDim, &elemMat));
25979566063dSJacob Faibussowitsch   PetscCall(PetscArrayzero(elemMat, rTotDim * cTotDim));
2598d69c5d34SMatthew G. Knepley   for (fieldI = 0, offsetI = 0; fieldI < Nf; ++fieldI) {
2599d69c5d34SMatthew G. Knepley     PetscDualSpace   Qref;
2600d69c5d34SMatthew G. Knepley     PetscQuadrature  f;
2601d69c5d34SMatthew G. Knepley     const PetscReal *qpoints, *qweights;
2602d69c5d34SMatthew G. Knepley     PetscReal       *points;
2603d69c5d34SMatthew G. Knepley     PetscInt         npoints = 0, Nc, Np, fpdim, i, k, p, d;
2604d69c5d34SMatthew G. Knepley 
2605d69c5d34SMatthew G. Knepley     /* Compose points from all dual basis functionals */
260697c42addSMatthew G. Knepley     if (feRef[fieldI]) {
26079566063dSJacob Faibussowitsch       PetscCall(PetscFEGetDualSpace(feRef[fieldI], &Qref));
26089566063dSJacob Faibussowitsch       PetscCall(PetscFEGetNumComponents(feRef[fieldI], &Nc));
260997c42addSMatthew G. Knepley     } else {
26109566063dSJacob Faibussowitsch       PetscCall(PetscFVGetDualSpace(fvRef[fieldI], &Qref));
26119566063dSJacob Faibussowitsch       PetscCall(PetscFVGetNumComponents(fvRef[fieldI], &Nc));
261297c42addSMatthew G. Knepley     }
26139566063dSJacob Faibussowitsch     PetscCall(PetscDualSpaceGetDimension(Qref, &fpdim));
2614d69c5d34SMatthew G. Knepley     for (i = 0; i < fpdim; ++i) {
26159566063dSJacob Faibussowitsch       PetscCall(PetscDualSpaceGetFunctional(Qref, i, &f));
26169566063dSJacob Faibussowitsch       PetscCall(PetscQuadratureGetData(f, NULL, NULL, &Np, NULL, NULL));
2617d69c5d34SMatthew G. Knepley       npoints += Np;
2618d69c5d34SMatthew G. Knepley     }
26199566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(npoints * dim, &points));
2620d69c5d34SMatthew G. Knepley     for (i = 0, k = 0; i < fpdim; ++i) {
26219566063dSJacob Faibussowitsch       PetscCall(PetscDualSpaceGetFunctional(Qref, i, &f));
26229566063dSJacob Faibussowitsch       PetscCall(PetscQuadratureGetData(f, NULL, NULL, &Np, &qpoints, NULL));
26239371c9d4SSatish Balay       for (p = 0; p < Np; ++p, ++k)
26249371c9d4SSatish Balay         for (d = 0; d < dim; ++d) points[k * dim + d] = qpoints[p * dim + d];
2625d69c5d34SMatthew G. Knepley     }
2626d69c5d34SMatthew G. Knepley 
2627d69c5d34SMatthew G. Knepley     for (fieldJ = 0, offsetJ = 0; fieldJ < Nf; ++fieldJ) {
262897c42addSMatthew G. Knepley       PetscObject  obj;
262997c42addSMatthew G. Knepley       PetscClassId id;
26309c3cf19fSMatthew G. Knepley       PetscInt     NcJ = 0, cpdim = 0, j, qNc;
2631d69c5d34SMatthew G. Knepley 
26329566063dSJacob Faibussowitsch       PetscCall(DMGetField(dmc, fieldJ, NULL, &obj));
26339566063dSJacob Faibussowitsch       PetscCall(PetscObjectGetClassId(obj, &id));
263497c42addSMatthew G. Knepley       if (id == PETSCFE_CLASSID) {
263597c42addSMatthew G. Knepley         PetscFE         fe = (PetscFE)obj;
2636ef0bb6c7SMatthew G. Knepley         PetscTabulation T  = NULL;
2637d69c5d34SMatthew G. Knepley 
2638d69c5d34SMatthew G. Knepley         /* Evaluate basis at points */
26399566063dSJacob Faibussowitsch         PetscCall(PetscFEGetNumComponents(fe, &NcJ));
26409566063dSJacob Faibussowitsch         PetscCall(PetscFEGetDimension(fe, &cpdim));
2641ffe73a53SMatthew G. Knepley         /* For now, fields only interpolate themselves */
2642ffe73a53SMatthew G. Knepley         if (fieldI == fieldJ) {
264363a3b9bcSJacob Faibussowitsch           PetscCheck(Nc == NcJ, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of components in fine space field %" PetscInt_FMT " does not match coarse field %" PetscInt_FMT, Nc, NcJ);
26449566063dSJacob Faibussowitsch           PetscCall(PetscFECreateTabulation(fe, 1, npoints, points, 0, &T));
2645d69c5d34SMatthew G. Knepley           for (i = 0, k = 0; i < fpdim; ++i) {
26469566063dSJacob Faibussowitsch             PetscCall(PetscDualSpaceGetFunctional(Qref, i, &f));
26479566063dSJacob Faibussowitsch             PetscCall(PetscQuadratureGetData(f, NULL, &qNc, &Np, NULL, &qweights));
264863a3b9bcSJacob Faibussowitsch             PetscCheck(qNc == NcJ, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of components in quadrature %" PetscInt_FMT " does not match coarse field %" PetscInt_FMT, qNc, NcJ);
2649d69c5d34SMatthew G. Knepley             for (p = 0; p < Np; ++p, ++k) {
265036a6d9c0SMatthew G. Knepley               for (j = 0; j < cpdim; ++j) {
2651d172c84bSMatthew G. Knepley                 /*
2652d172c84bSMatthew G. Knepley                    cTotDim:            Total columns in element interpolation matrix, sum of number of dual basis functionals in each field
2653d172c84bSMatthew G. Knepley                    offsetI, offsetJ:   Offsets into the larger element interpolation matrix for different fields
2654d172c84bSMatthew G. Knepley                    fpdim, i, cpdim, j: Dofs for fine and coarse grids, correspond to dual space basis functionals
2655d172c84bSMatthew G. Knepley                    qNC, Nc, Ncj, c:    Number of components in this field
2656d172c84bSMatthew G. Knepley                    Np, p:              Number of quad points in the fine grid functional i
2657d172c84bSMatthew G. Knepley                    k:                  i*Np + p, overall point number for the interpolation
2658d172c84bSMatthew G. Knepley                 */
2659ef0bb6c7SMatthew G. Knepley                 for (c = 0; c < Nc; ++c) elemMat[(offsetI + i) * cTotDim + offsetJ + j] += T->T[0][k * cpdim * NcJ + j * Nc + c] * qweights[p * qNc + c];
266036a6d9c0SMatthew G. Knepley               }
2661d69c5d34SMatthew G. Knepley             }
2662d69c5d34SMatthew G. Knepley           }
26639566063dSJacob Faibussowitsch           PetscCall(PetscTabulationDestroy(&T));
2664ffe73a53SMatthew G. Knepley         }
266597c42addSMatthew G. Knepley       } else if (id == PETSCFV_CLASSID) {
266697c42addSMatthew G. Knepley         PetscFV fv = (PetscFV)obj;
266797c42addSMatthew G. Knepley 
266897c42addSMatthew G. Knepley         /* Evaluate constant function at points */
26699566063dSJacob Faibussowitsch         PetscCall(PetscFVGetNumComponents(fv, &NcJ));
267097c42addSMatthew G. Knepley         cpdim = 1;
267197c42addSMatthew G. Knepley         /* For now, fields only interpolate themselves */
267297c42addSMatthew G. Knepley         if (fieldI == fieldJ) {
267363a3b9bcSJacob Faibussowitsch           PetscCheck(Nc == NcJ, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of components in fine space field %" PetscInt_FMT " does not match coarse field %" PetscInt_FMT, Nc, NcJ);
267497c42addSMatthew G. Knepley           for (i = 0, k = 0; i < fpdim; ++i) {
26759566063dSJacob Faibussowitsch             PetscCall(PetscDualSpaceGetFunctional(Qref, i, &f));
26769566063dSJacob Faibussowitsch             PetscCall(PetscQuadratureGetData(f, NULL, &qNc, &Np, NULL, &qweights));
267763a3b9bcSJacob Faibussowitsch             PetscCheck(qNc == NcJ, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of components in quadrature %" PetscInt_FMT " does not match coarse field %" PetscInt_FMT, qNc, NcJ);
267897c42addSMatthew G. Knepley             for (p = 0; p < Np; ++p, ++k) {
267997c42addSMatthew G. Knepley               for (j = 0; j < cpdim; ++j) {
2680458eb97cSMatthew G. Knepley                 for (c = 0; c < Nc; ++c) elemMat[(offsetI + i) * cTotDim + offsetJ + j] += 1.0 * qweights[p * qNc + c];
268197c42addSMatthew G. Knepley               }
268297c42addSMatthew G. Knepley             }
268397c42addSMatthew G. Knepley           }
268497c42addSMatthew G. Knepley         }
268597c42addSMatthew G. Knepley       }
2686d172c84bSMatthew G. Knepley       offsetJ += cpdim;
2687d69c5d34SMatthew G. Knepley     }
2688d172c84bSMatthew G. Knepley     offsetI += fpdim;
26899566063dSJacob Faibussowitsch     PetscCall(PetscFree(points));
2690d69c5d34SMatthew G. Knepley   }
26919566063dSJacob Faibussowitsch   if (mesh->printFEM > 1) PetscCall(DMPrintCellMatrix(0, name, rTotDim, cTotDim, elemMat));
26927f5b169aSMatthew G. Knepley   /* Preallocate matrix */
26937f5b169aSMatthew G. Knepley   {
2694c094ef40SMatthew G. Knepley     Mat          preallocator;
2695c094ef40SMatthew G. Knepley     PetscScalar *vals;
2696c094ef40SMatthew G. Knepley     PetscInt    *cellCIndices, *cellFIndices;
2697c094ef40SMatthew G. Knepley     PetscInt     locRows, locCols, cell;
26987f5b169aSMatthew G. Knepley 
26999566063dSJacob Faibussowitsch     PetscCall(MatGetLocalSize(In, &locRows, &locCols));
27009566063dSJacob Faibussowitsch     PetscCall(MatCreate(PetscObjectComm((PetscObject)In), &preallocator));
27019566063dSJacob Faibussowitsch     PetscCall(MatSetType(preallocator, MATPREALLOCATOR));
27029566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(preallocator, locRows, locCols, PETSC_DETERMINE, PETSC_DETERMINE));
27039566063dSJacob Faibussowitsch     PetscCall(MatSetUp(preallocator));
27049566063dSJacob Faibussowitsch     PetscCall(PetscCalloc3(rTotDim * cTotDim, &vals, cTotDim, &cellCIndices, rTotDim, &cellFIndices));
27057f5b169aSMatthew G. Knepley     for (cell = cStart; cell < cEnd; ++cell) {
2706cf51de39SMatthew G. Knepley       if (isRefined) {
27079566063dSJacob Faibussowitsch         PetscCall(DMPlexMatGetClosureIndicesRefined(dmf, fsection, fglobalSection, dmc, csection, cglobalSection, cell, cellCIndices, cellFIndices));
27089566063dSJacob Faibussowitsch         PetscCall(MatSetValues(preallocator, rTotDim, cellFIndices, cTotDim, cellCIndices, vals, INSERT_VALUES));
2709cf51de39SMatthew G. Knepley       } else {
27109566063dSJacob Faibussowitsch         PetscCall(DMPlexMatSetClosureGeneral(dmf, fsection, fglobalSection, dmc, csection, cglobalSection, preallocator, cell, vals, INSERT_VALUES));
2711cf51de39SMatthew G. Knepley       }
27127f5b169aSMatthew G. Knepley     }
27139566063dSJacob Faibussowitsch     PetscCall(PetscFree3(vals, cellCIndices, cellFIndices));
27149566063dSJacob Faibussowitsch     PetscCall(MatAssemblyBegin(preallocator, MAT_FINAL_ASSEMBLY));
27159566063dSJacob Faibussowitsch     PetscCall(MatAssemblyEnd(preallocator, MAT_FINAL_ASSEMBLY));
27169566063dSJacob Faibussowitsch     PetscCall(MatPreallocatorPreallocate(preallocator, PETSC_TRUE, In));
27179566063dSJacob Faibussowitsch     PetscCall(MatDestroy(&preallocator));
27187f5b169aSMatthew G. Knepley   }
27197f5b169aSMatthew G. Knepley   /* Fill matrix */
27209566063dSJacob Faibussowitsch   PetscCall(MatZeroEntries(In));
2721d69c5d34SMatthew G. Knepley   for (c = cStart; c < cEnd; ++c) {
2722cf51de39SMatthew G. Knepley     if (isRefined) {
27239566063dSJacob Faibussowitsch       PetscCall(DMPlexMatSetClosureRefined(dmf, fsection, fglobalSection, dmc, csection, cglobalSection, In, c, elemMat, INSERT_VALUES));
2724cf51de39SMatthew G. Knepley     } else {
27259566063dSJacob Faibussowitsch       PetscCall(DMPlexMatSetClosureGeneral(dmf, fsection, fglobalSection, dmc, csection, cglobalSection, In, c, elemMat, INSERT_VALUES));
2726cf51de39SMatthew G. Knepley     }
2727d69c5d34SMatthew G. Knepley   }
27289566063dSJacob Faibussowitsch   for (f = 0; f < Nf; ++f) PetscCall(PetscFEDestroy(&feRef[f]));
27299566063dSJacob Faibussowitsch   PetscCall(PetscFree2(feRef, fvRef));
27309566063dSJacob Faibussowitsch   PetscCall(PetscFree(elemMat));
27319566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(In, MAT_FINAL_ASSEMBLY));
27329566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(In, MAT_FINAL_ASSEMBLY));
27339318fe57SMatthew G. Knepley   if (mesh->printFEM > 1) {
27349566063dSJacob Faibussowitsch     PetscCall(PetscPrintf(PetscObjectComm((PetscObject)In), "%s:\n", name));
27359566063dSJacob Faibussowitsch     PetscCall(MatChop(In, 1.0e-10));
27369566063dSJacob Faibussowitsch     PetscCall(MatView(In, NULL));
2737d69c5d34SMatthew G. Knepley   }
27389566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(DMPLEX_InterpolatorFEM, dmc, dmf, 0, 0));
27393ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2740d69c5d34SMatthew G. Knepley }
27416c73c22cSMatthew G. Knepley 
2742d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeMassMatrixNested(DM dmc, DM dmf, Mat mass, void *user)
2743d71ae5a4SJacob Faibussowitsch {
2744bd041c0cSMatthew G. Knepley   SETERRQ(PetscObjectComm((PetscObject)dmc), PETSC_ERR_SUP, "Laziness");
2745bd041c0cSMatthew G. Knepley }
2746bd041c0cSMatthew G. Knepley 
274768132eb9SMatthew G. Knepley /*@
2748a1cb98faSBarry Smith   DMPlexComputeInterpolatorGeneral - Form the local portion of the interpolation matrix I from the coarse `DM` to a non-nested fine `DM`.
274968132eb9SMatthew G. Knepley 
275068132eb9SMatthew G. Knepley   Input Parameters:
275168132eb9SMatthew G. Knepley + dmf  - The fine mesh
275268132eb9SMatthew G. Knepley . dmc  - The coarse mesh
275368132eb9SMatthew G. Knepley - user - The user context
275468132eb9SMatthew G. Knepley 
275568132eb9SMatthew G. Knepley   Output Parameter:
275668132eb9SMatthew G. Knepley . In  - The interpolation matrix
275768132eb9SMatthew G. Knepley 
275868132eb9SMatthew G. Knepley   Level: developer
275968132eb9SMatthew G. Knepley 
2760a1cb98faSBarry Smith .seealso: [](chapter_unstructured), `DM`, `DMPLEX`, `DMPlexComputeInterpolatorNested()`, `DMPlexComputeJacobianFEM()`
276168132eb9SMatthew G. Knepley @*/
2762d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeInterpolatorGeneral(DM dmc, DM dmf, Mat In, void *user)
2763d71ae5a4SJacob Faibussowitsch {
276464e98e1dSMatthew G. Knepley   DM_Plex     *mesh = (DM_Plex *)dmf->data;
276564e98e1dSMatthew G. Knepley   const char  *name = "Interpolator";
27664ef9d792SMatthew G. Knepley   PetscDS      prob;
2767a0806964SMatthew G. Knepley   Mat          interp;
2768a0806964SMatthew G. Knepley   PetscSection fsection, globalFSection;
2769a0806964SMatthew G. Knepley   PetscSection csection, globalCSection;
2770a0806964SMatthew G. Knepley   PetscInt     locRows, locCols;
27714ef9d792SMatthew G. Knepley   PetscReal   *x, *v0, *J, *invJ, detJ;
27724ef9d792SMatthew G. Knepley   PetscReal   *v0c, *Jc, *invJc, detJc;
27734ef9d792SMatthew G. Knepley   PetscScalar *elemMat;
2774a0806964SMatthew G. Knepley   PetscInt     dim, Nf, field, totDim, cStart, cEnd, cell, ccell, s;
27754ef9d792SMatthew G. Knepley 
27764ef9d792SMatthew G. Knepley   PetscFunctionBegin;
27779566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(DMPLEX_InterpolatorFEM, dmc, dmf, 0, 0));
27789566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateDim(dmc, &dim));
27799566063dSJacob Faibussowitsch   PetscCall(DMGetDS(dmc, &prob));
27809566063dSJacob Faibussowitsch   PetscCall(PetscDSGetWorkspace(prob, &x, NULL, NULL, NULL, NULL));
27819566063dSJacob Faibussowitsch   PetscCall(PetscDSGetNumFields(prob, &Nf));
27829566063dSJacob Faibussowitsch   PetscCall(PetscMalloc3(dim, &v0, dim * dim, &J, dim * dim, &invJ));
27839566063dSJacob Faibussowitsch   PetscCall(PetscMalloc3(dim, &v0c, dim * dim, &Jc, dim * dim, &invJc));
27849566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dmf, &fsection));
27859566063dSJacob Faibussowitsch   PetscCall(DMGetGlobalSection(dmf, &globalFSection));
27869566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dmc, &csection));
27879566063dSJacob Faibussowitsch   PetscCall(DMGetGlobalSection(dmc, &globalCSection));
2788a0806964SMatthew G. Knepley   PetscCall(DMPlexGetSimplexOrBoxCells(dmf, 0, &cStart, &cEnd));
27899566063dSJacob Faibussowitsch   PetscCall(PetscDSGetTotalDimension(prob, &totDim));
27909566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(totDim, &elemMat));
27914ef9d792SMatthew G. Knepley 
2792a0806964SMatthew G. Knepley   PetscCall(MatGetLocalSize(In, &locRows, &locCols));
2793a0806964SMatthew G. Knepley   PetscCall(MatCreate(PetscObjectComm((PetscObject)In), &interp));
2794a0806964SMatthew G. Knepley   PetscCall(MatSetType(interp, MATPREALLOCATOR));
2795a0806964SMatthew G. Knepley   PetscCall(MatSetSizes(interp, locRows, locCols, PETSC_DETERMINE, PETSC_DETERMINE));
2796a0806964SMatthew G. Knepley   PetscCall(MatSetUp(interp));
2797a0806964SMatthew G. Knepley   for (s = 0; s < 2; ++s) {
27984ef9d792SMatthew G. Knepley     for (field = 0; field < Nf; ++field) {
27994ef9d792SMatthew G. Knepley       PetscObject      obj;
28004ef9d792SMatthew G. Knepley       PetscClassId     id;
2801c0d7054bSMatthew G. Knepley       PetscDualSpace   Q = NULL;
2802ef0bb6c7SMatthew G. Knepley       PetscTabulation  T = NULL;
28034ef9d792SMatthew G. Knepley       PetscQuadrature  f;
28044ef9d792SMatthew G. Knepley       const PetscReal *qpoints, *qweights;
2805d0f6233fSMatthew G. Knepley       PetscInt         Nc, qNc, Np, fpdim, off, i, d;
28064ef9d792SMatthew G. Knepley 
2807d0f6233fSMatthew G. Knepley       PetscCall(PetscDSGetFieldOffset(prob, field, &off));
28089566063dSJacob Faibussowitsch       PetscCall(PetscDSGetDiscretization(prob, field, &obj));
28099566063dSJacob Faibussowitsch       PetscCall(PetscObjectGetClassId(obj, &id));
28104ef9d792SMatthew G. Knepley       if (id == PETSCFE_CLASSID) {
28114ef9d792SMatthew G. Knepley         PetscFE fe = (PetscFE)obj;
28124ef9d792SMatthew G. Knepley 
28139566063dSJacob Faibussowitsch         PetscCall(PetscFEGetDualSpace(fe, &Q));
28149566063dSJacob Faibussowitsch         PetscCall(PetscFEGetNumComponents(fe, &Nc));
2815a0806964SMatthew G. Knepley         if (s) PetscCall(PetscFECreateTabulation(fe, 1, 1, x, 0, &T));
28164ef9d792SMatthew G. Knepley       } else if (id == PETSCFV_CLASSID) {
28174ef9d792SMatthew G. Knepley         PetscFV fv = (PetscFV)obj;
28184ef9d792SMatthew G. Knepley 
28199566063dSJacob Faibussowitsch         PetscCall(PetscFVGetDualSpace(fv, &Q));
28204ef9d792SMatthew G. Knepley         Nc = 1;
282163a3b9bcSJacob Faibussowitsch       } else SETERRQ(PetscObjectComm((PetscObject)dmc), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, field);
28229566063dSJacob Faibussowitsch       PetscCall(PetscDualSpaceGetDimension(Q, &fpdim));
28234ef9d792SMatthew G. Knepley       /* For each fine grid cell */
28244ef9d792SMatthew G. Knepley       for (cell = cStart; cell < cEnd; ++cell) {
28254ef9d792SMatthew G. Knepley         PetscInt *findices, *cindices;
28264ef9d792SMatthew G. Knepley         PetscInt  numFIndices, numCIndices;
28274ef9d792SMatthew G. Knepley 
28289566063dSJacob Faibussowitsch         PetscCall(DMPlexGetClosureIndices(dmf, fsection, globalFSection, cell, PETSC_FALSE, &numFIndices, &findices, NULL, NULL));
28299566063dSJacob Faibussowitsch         PetscCall(DMPlexComputeCellGeometryFEM(dmf, cell, NULL, v0, J, invJ, &detJ));
2830d0f6233fSMatthew G. Knepley         PetscCheck(numFIndices == totDim, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of fine indices %" PetscInt_FMT " != %" PetscInt_FMT " dual basis vecs", numFIndices, totDim);
28314ef9d792SMatthew G. Knepley         for (i = 0; i < fpdim; ++i) {
28324ef9d792SMatthew G. Knepley           Vec                pointVec;
28334ef9d792SMatthew G. Knepley           PetscScalar       *pV;
283412111d7cSToby Isaac           PetscSF            coarseCellSF = NULL;
28353a93e3b7SToby Isaac           const PetscSFNode *coarseCells;
2836d0f6233fSMatthew G. Knepley           PetscInt           numCoarseCells, cpdim, row = findices[i + off], q, c, j;
28374ef9d792SMatthew G. Knepley 
28384ef9d792SMatthew G. Knepley           /* Get points from the dual basis functional quadrature */
28399566063dSJacob Faibussowitsch           PetscCall(PetscDualSpaceGetFunctional(Q, i, &f));
28409566063dSJacob Faibussowitsch           PetscCall(PetscQuadratureGetData(f, NULL, &qNc, &Np, &qpoints, &qweights));
284163a3b9bcSJacob Faibussowitsch           PetscCheck(qNc == Nc, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of components in quadrature %" PetscInt_FMT " does not match coarse field %" PetscInt_FMT, qNc, Nc);
28429566063dSJacob Faibussowitsch           PetscCall(VecCreateSeq(PETSC_COMM_SELF, Np * dim, &pointVec));
28439566063dSJacob Faibussowitsch           PetscCall(VecSetBlockSize(pointVec, dim));
28449566063dSJacob Faibussowitsch           PetscCall(VecGetArray(pointVec, &pV));
28454ef9d792SMatthew G. Knepley           for (q = 0; q < Np; ++q) {
2846c330f8ffSToby Isaac             const PetscReal xi0[3] = {-1., -1., -1.};
2847c330f8ffSToby Isaac 
28484ef9d792SMatthew G. Knepley             /* Transform point to real space */
2849c330f8ffSToby Isaac             CoordinatesRefToReal(dim, dim, xi0, v0, J, &qpoints[q * dim], x);
28504ef9d792SMatthew G. Knepley             for (d = 0; d < dim; ++d) pV[q * dim + d] = x[d];
28514ef9d792SMatthew G. Knepley           }
28529566063dSJacob Faibussowitsch           PetscCall(VecRestoreArray(pointVec, &pV));
28534ef9d792SMatthew G. Knepley           /* Get set of coarse cells that overlap points (would like to group points by coarse cell) */
28541555c271SMatthew G. Knepley           /* OPT: Read this out from preallocation information */
28559566063dSJacob Faibussowitsch           PetscCall(DMLocatePoints(dmc, pointVec, DM_POINTLOCATION_NEAREST, &coarseCellSF));
28564ef9d792SMatthew G. Knepley           /* Update preallocation info */
28579566063dSJacob Faibussowitsch           PetscCall(PetscSFGetGraph(coarseCellSF, NULL, &numCoarseCells, NULL, &coarseCells));
28585f80ce2aSJacob Faibussowitsch           PetscCheck(numCoarseCells == Np, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Not all closure points located");
28599566063dSJacob Faibussowitsch           PetscCall(VecGetArray(pointVec, &pV));
28604ef9d792SMatthew G. Knepley           for (ccell = 0; ccell < numCoarseCells; ++ccell) {
2861826eb36dSMatthew G. Knepley             PetscReal       pVReal[3];
2862c330f8ffSToby Isaac             const PetscReal xi0[3] = {-1., -1., -1.};
2863826eb36dSMatthew G. Knepley 
28649566063dSJacob Faibussowitsch             PetscCall(DMPlexGetClosureIndices(dmc, csection, globalCSection, coarseCells[ccell].index, PETSC_FALSE, &numCIndices, &cindices, NULL, NULL));
2865a0806964SMatthew G. Knepley             if (id == PETSCFE_CLASSID) PetscCall(PetscFEGetDimension((PetscFE)obj, &cpdim));
2866a0806964SMatthew G. Knepley             else cpdim = 1;
2867a0806964SMatthew G. Knepley 
2868a0806964SMatthew G. Knepley             if (s) {
28694ef9d792SMatthew G. Knepley               /* Transform points from real space to coarse reference space */
28709566063dSJacob Faibussowitsch               PetscCall(DMPlexComputeCellGeometryFEM(dmc, coarseCells[ccell].index, NULL, v0c, Jc, invJc, &detJc));
2871e2d86523SMatthew G. Knepley               for (d = 0; d < dim; ++d) pVReal[d] = PetscRealPart(pV[ccell * dim + d]);
2872c330f8ffSToby Isaac               CoordinatesRealToRef(dim, dim, xi0, v0c, invJc, pVReal, x);
28734ef9d792SMatthew G. Knepley 
28744ef9d792SMatthew G. Knepley               if (id == PETSCFE_CLASSID) {
28754ef9d792SMatthew G. Knepley                 /* Evaluate coarse basis on contained point */
2876a0806964SMatthew G. Knepley                 PetscCall(PetscFEComputeTabulation((PetscFE)obj, 1, x, 0, T));
28779566063dSJacob Faibussowitsch                 PetscCall(PetscArrayzero(elemMat, cpdim));
28784ef9d792SMatthew G. Knepley                 /* Get elemMat entries by multiplying by weight */
28794ef9d792SMatthew G. Knepley                 for (j = 0; j < cpdim; ++j) {
2880ef0bb6c7SMatthew G. Knepley                   for (c = 0; c < Nc; ++c) elemMat[j] += T->T[0][j * Nc + c] * qweights[ccell * qNc + c];
28814ef9d792SMatthew G. Knepley                 }
28824ef9d792SMatthew G. Knepley               } else {
28834ef9d792SMatthew G. Knepley                 for (j = 0; j < cpdim; ++j) {
28849c3cf19fSMatthew G. Knepley                   for (c = 0; c < Nc; ++c) elemMat[j] += 1.0 * qweights[ccell * qNc + c];
28854ef9d792SMatthew G. Knepley                 }
28864ef9d792SMatthew G. Knepley               }
28879566063dSJacob Faibussowitsch               if (mesh->printFEM > 1) PetscCall(DMPrintCellMatrix(cell, name, 1, numCIndices, elemMat));
2888a0806964SMatthew G. Knepley             }
2889a0806964SMatthew G. Knepley             /* Update interpolator */
2890d0f6233fSMatthew G. Knepley             PetscCheck(numCIndices == totDim, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Number of element matrix columns %" PetscInt_FMT " != %" PetscInt_FMT, numCIndices, totDim);
2891a0806964SMatthew G. Knepley             PetscCall(MatSetValues(interp, 1, &row, cpdim, &cindices[off], elemMat, INSERT_VALUES));
28929566063dSJacob Faibussowitsch             PetscCall(DMPlexRestoreClosureIndices(dmc, csection, globalCSection, coarseCells[ccell].index, PETSC_FALSE, &numCIndices, &cindices, NULL, NULL));
28934ef9d792SMatthew G. Knepley           }
28949566063dSJacob Faibussowitsch           PetscCall(VecRestoreArray(pointVec, &pV));
28959566063dSJacob Faibussowitsch           PetscCall(PetscSFDestroy(&coarseCellSF));
28969566063dSJacob Faibussowitsch           PetscCall(VecDestroy(&pointVec));
28974ef9d792SMatthew G. Knepley         }
28989566063dSJacob Faibussowitsch         PetscCall(DMPlexRestoreClosureIndices(dmf, fsection, globalFSection, cell, PETSC_FALSE, &numFIndices, &findices, NULL, NULL));
28994ef9d792SMatthew G. Knepley       }
2900a0806964SMatthew G. Knepley       if (s && id == PETSCFE_CLASSID) PetscCall(PetscTabulationDestroy(&T));
2901a0806964SMatthew G. Knepley     }
2902a0806964SMatthew G. Knepley     if (!s) {
2903a0806964SMatthew G. Knepley       PetscCall(MatAssemblyBegin(interp, MAT_FINAL_ASSEMBLY));
2904a0806964SMatthew G. Knepley       PetscCall(MatAssemblyEnd(interp, MAT_FINAL_ASSEMBLY));
2905a0806964SMatthew G. Knepley       PetscCall(MatPreallocatorPreallocate(interp, PETSC_TRUE, In));
2906a0806964SMatthew G. Knepley       PetscCall(MatDestroy(&interp));
2907a0806964SMatthew G. Knepley       interp = In;
2908a0806964SMatthew G. Knepley     }
29094ef9d792SMatthew G. Knepley   }
29109566063dSJacob Faibussowitsch   PetscCall(PetscFree3(v0, J, invJ));
29119566063dSJacob Faibussowitsch   PetscCall(PetscFree3(v0c, Jc, invJc));
29129566063dSJacob Faibussowitsch   PetscCall(PetscFree(elemMat));
29139566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(In, MAT_FINAL_ASSEMBLY));
29149566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(In, MAT_FINAL_ASSEMBLY));
29159566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(DMPLEX_InterpolatorFEM, dmc, dmf, 0, 0));
29163ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
29174ef9d792SMatthew G. Knepley }
29184ef9d792SMatthew G. Knepley 
291946fa42a0SMatthew G. Knepley /*@
2920a1cb98faSBarry Smith   DMPlexComputeMassMatrixGeneral - Form the local portion of the mass matrix M from the coarse `DM` to a non-nested fine `DM`.
2921bd041c0cSMatthew G. Knepley 
2922bd041c0cSMatthew G. Knepley   Input Parameters:
2923bd041c0cSMatthew G. Knepley + dmf  - The fine mesh
2924bd041c0cSMatthew G. Knepley . dmc  - The coarse mesh
2925bd041c0cSMatthew G. Knepley - user - The user context
2926bd041c0cSMatthew G. Knepley 
2927bd041c0cSMatthew G. Knepley   Output Parameter:
2928bd041c0cSMatthew G. Knepley . mass  - The mass matrix
2929bd041c0cSMatthew G. Knepley 
2930bd041c0cSMatthew G. Knepley   Level: developer
2931bd041c0cSMatthew G. Knepley 
2932a1cb98faSBarry Smith .seealso: [](chapter_unstructured), `DM`, `DMPLEX`, `DMPlexComputeMassMatrixNested()`, `DMPlexComputeInterpolatorNested()`, `DMPlexComputeInterpolatorGeneral()`, `DMPlexComputeJacobianFEM()`
2933bd041c0cSMatthew G. Knepley @*/
2934d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeMassMatrixGeneral(DM dmc, DM dmf, Mat mass, void *user)
2935d71ae5a4SJacob Faibussowitsch {
2936bd041c0cSMatthew G. Knepley   DM_Plex     *mesh = (DM_Plex *)dmf->data;
2937bd041c0cSMatthew G. Knepley   const char  *name = "Mass Matrix";
2938bd041c0cSMatthew G. Knepley   PetscDS      prob;
2939bd041c0cSMatthew G. Knepley   PetscSection fsection, csection, globalFSection, globalCSection;
2940e8f14785SLisandro Dalcin   PetscHSetIJ  ht;
2941bd041c0cSMatthew G. Knepley   PetscLayout  rLayout;
2942bd041c0cSMatthew G. Knepley   PetscInt    *dnz, *onz;
2943bd041c0cSMatthew G. Knepley   PetscInt     locRows, rStart, rEnd;
2944bd041c0cSMatthew G. Knepley   PetscReal   *x, *v0, *J, *invJ, detJ;
2945bd041c0cSMatthew G. Knepley   PetscReal   *v0c, *Jc, *invJc, detJc;
2946bd041c0cSMatthew G. Knepley   PetscScalar *elemMat;
2947bd041c0cSMatthew G. Knepley   PetscInt     dim, Nf, field, totDim, cStart, cEnd, cell, ccell;
2948bd041c0cSMatthew G. Knepley 
2949bd041c0cSMatthew G. Knepley   PetscFunctionBegin;
29509566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateDim(dmc, &dim));
29519566063dSJacob Faibussowitsch   PetscCall(DMGetDS(dmc, &prob));
29529566063dSJacob Faibussowitsch   PetscCall(PetscDSGetWorkspace(prob, &x, NULL, NULL, NULL, NULL));
29539566063dSJacob Faibussowitsch   PetscCall(PetscDSGetNumFields(prob, &Nf));
29549566063dSJacob Faibussowitsch   PetscCall(PetscMalloc3(dim, &v0, dim * dim, &J, dim * dim, &invJ));
29559566063dSJacob Faibussowitsch   PetscCall(PetscMalloc3(dim, &v0c, dim * dim, &Jc, dim * dim, &invJc));
29569566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dmf, &fsection));
29579566063dSJacob Faibussowitsch   PetscCall(DMGetGlobalSection(dmf, &globalFSection));
29589566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dmc, &csection));
29599566063dSJacob Faibussowitsch   PetscCall(DMGetGlobalSection(dmc, &globalCSection));
29609566063dSJacob Faibussowitsch   PetscCall(DMPlexGetHeightStratum(dmf, 0, &cStart, &cEnd));
29619566063dSJacob Faibussowitsch   PetscCall(PetscDSGetTotalDimension(prob, &totDim));
29629566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(totDim, &elemMat));
2963bd041c0cSMatthew G. Knepley 
29649566063dSJacob Faibussowitsch   PetscCall(MatGetLocalSize(mass, &locRows, NULL));
29659566063dSJacob Faibussowitsch   PetscCall(PetscLayoutCreate(PetscObjectComm((PetscObject)mass), &rLayout));
29669566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetLocalSize(rLayout, locRows));
29679566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetBlockSize(rLayout, 1));
29689566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(rLayout));
29699566063dSJacob Faibussowitsch   PetscCall(PetscLayoutGetRange(rLayout, &rStart, &rEnd));
29709566063dSJacob Faibussowitsch   PetscCall(PetscLayoutDestroy(&rLayout));
29719566063dSJacob Faibussowitsch   PetscCall(PetscCalloc2(locRows, &dnz, locRows, &onz));
29729566063dSJacob Faibussowitsch   PetscCall(PetscHSetIJCreate(&ht));
2973bd041c0cSMatthew G. Knepley   for (field = 0; field < Nf; ++field) {
2974bd041c0cSMatthew G. Knepley     PetscObject      obj;
2975bd041c0cSMatthew G. Knepley     PetscClassId     id;
2976bd041c0cSMatthew G. Knepley     PetscQuadrature  quad;
2977bd041c0cSMatthew G. Knepley     const PetscReal *qpoints;
2978bd041c0cSMatthew G. Knepley     PetscInt         Nq, Nc, i, d;
2979bd041c0cSMatthew G. Knepley 
29809566063dSJacob Faibussowitsch     PetscCall(PetscDSGetDiscretization(prob, field, &obj));
29819566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetClassId(obj, &id));
29829566063dSJacob Faibussowitsch     if (id == PETSCFE_CLASSID) PetscCall(PetscFEGetQuadrature((PetscFE)obj, &quad));
29839566063dSJacob Faibussowitsch     else PetscCall(PetscFVGetQuadrature((PetscFV)obj, &quad));
29849566063dSJacob Faibussowitsch     PetscCall(PetscQuadratureGetData(quad, NULL, &Nc, &Nq, &qpoints, NULL));
2985bd041c0cSMatthew G. Knepley     /* For each fine grid cell */
2986bd041c0cSMatthew G. Knepley     for (cell = cStart; cell < cEnd; ++cell) {
2987bd041c0cSMatthew G. Knepley       Vec                pointVec;
2988bd041c0cSMatthew G. Knepley       PetscScalar       *pV;
2989bd041c0cSMatthew G. Knepley       PetscSF            coarseCellSF = NULL;
2990bd041c0cSMatthew G. Knepley       const PetscSFNode *coarseCells;
2991bd041c0cSMatthew G. Knepley       PetscInt           numCoarseCells, q, c;
2992bd041c0cSMatthew G. Knepley       PetscInt          *findices, *cindices;
2993bd041c0cSMatthew G. Knepley       PetscInt           numFIndices, numCIndices;
2994bd041c0cSMatthew G. Knepley 
29959566063dSJacob Faibussowitsch       PetscCall(DMPlexGetClosureIndices(dmf, fsection, globalFSection, cell, PETSC_FALSE, &numFIndices, &findices, NULL, NULL));
29969566063dSJacob Faibussowitsch       PetscCall(DMPlexComputeCellGeometryFEM(dmf, cell, NULL, v0, J, invJ, &detJ));
2997bd041c0cSMatthew G. Knepley       /* Get points from the quadrature */
29989566063dSJacob Faibussowitsch       PetscCall(VecCreateSeq(PETSC_COMM_SELF, Nq * dim, &pointVec));
29999566063dSJacob Faibussowitsch       PetscCall(VecSetBlockSize(pointVec, dim));
30009566063dSJacob Faibussowitsch       PetscCall(VecGetArray(pointVec, &pV));
3001bd041c0cSMatthew G. Knepley       for (q = 0; q < Nq; ++q) {
3002c330f8ffSToby Isaac         const PetscReal xi0[3] = {-1., -1., -1.};
3003c330f8ffSToby Isaac 
3004bd041c0cSMatthew G. Knepley         /* Transform point to real space */
3005c330f8ffSToby Isaac         CoordinatesRefToReal(dim, dim, xi0, v0, J, &qpoints[q * dim], x);
3006bd041c0cSMatthew G. Knepley         for (d = 0; d < dim; ++d) pV[q * dim + d] = x[d];
3007bd041c0cSMatthew G. Knepley       }
30089566063dSJacob Faibussowitsch       PetscCall(VecRestoreArray(pointVec, &pV));
3009bd041c0cSMatthew G. Knepley       /* Get set of coarse cells that overlap points (would like to group points by coarse cell) */
30109566063dSJacob Faibussowitsch       PetscCall(DMLocatePoints(dmc, pointVec, DM_POINTLOCATION_NEAREST, &coarseCellSF));
30119566063dSJacob Faibussowitsch       PetscCall(PetscSFViewFromOptions(coarseCellSF, NULL, "-interp_sf_view"));
3012bd041c0cSMatthew G. Knepley       /* Update preallocation info */
30139566063dSJacob Faibussowitsch       PetscCall(PetscSFGetGraph(coarseCellSF, NULL, &numCoarseCells, NULL, &coarseCells));
30145f80ce2aSJacob Faibussowitsch       PetscCheck(numCoarseCells == Nq, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Not all closure points located");
3015bd041c0cSMatthew G. Knepley       {
3016e8f14785SLisandro Dalcin         PetscHashIJKey key;
3017e8f14785SLisandro Dalcin         PetscBool      missing;
3018bd041c0cSMatthew G. Knepley 
3019bd041c0cSMatthew G. Knepley         for (i = 0; i < numFIndices; ++i) {
3020e8f14785SLisandro Dalcin           key.i = findices[i];
3021e8f14785SLisandro Dalcin           if (key.i >= 0) {
3022bd041c0cSMatthew G. Knepley             /* Get indices for coarse elements */
3023bd041c0cSMatthew G. Knepley             for (ccell = 0; ccell < numCoarseCells; ++ccell) {
30249566063dSJacob Faibussowitsch               PetscCall(DMPlexGetClosureIndices(dmc, csection, globalCSection, coarseCells[ccell].index, PETSC_FALSE, &numCIndices, &cindices, NULL, NULL));
3025bd041c0cSMatthew G. Knepley               for (c = 0; c < numCIndices; ++c) {
3026e8f14785SLisandro Dalcin                 key.j = cindices[c];
3027e8f14785SLisandro Dalcin                 if (key.j < 0) continue;
30289566063dSJacob Faibussowitsch                 PetscCall(PetscHSetIJQueryAdd(ht, key, &missing));
3029bd041c0cSMatthew G. Knepley                 if (missing) {
3030e8f14785SLisandro Dalcin                   if ((key.j >= rStart) && (key.j < rEnd)) ++dnz[key.i - rStart];
3031e8f14785SLisandro Dalcin                   else ++onz[key.i - rStart];
3032bd041c0cSMatthew G. Knepley                 }
3033bd041c0cSMatthew G. Knepley               }
30349566063dSJacob Faibussowitsch               PetscCall(DMPlexRestoreClosureIndices(dmc, csection, globalCSection, coarseCells[ccell].index, PETSC_FALSE, &numCIndices, &cindices, NULL, NULL));
3035bd041c0cSMatthew G. Knepley             }
3036bd041c0cSMatthew G. Knepley           }
3037bd041c0cSMatthew G. Knepley         }
3038bd041c0cSMatthew G. Knepley       }
30399566063dSJacob Faibussowitsch       PetscCall(PetscSFDestroy(&coarseCellSF));
30409566063dSJacob Faibussowitsch       PetscCall(VecDestroy(&pointVec));
30419566063dSJacob Faibussowitsch       PetscCall(DMPlexRestoreClosureIndices(dmf, fsection, globalFSection, cell, PETSC_FALSE, &numFIndices, &findices, NULL, NULL));
3042bd041c0cSMatthew G. Knepley     }
3043bd041c0cSMatthew G. Knepley   }
30449566063dSJacob Faibussowitsch   PetscCall(PetscHSetIJDestroy(&ht));
30459566063dSJacob Faibussowitsch   PetscCall(MatXAIJSetPreallocation(mass, 1, dnz, onz, NULL, NULL));
30469566063dSJacob Faibussowitsch   PetscCall(MatSetOption(mass, MAT_NEW_NONZERO_ALLOCATION_ERR, PETSC_TRUE));
30479566063dSJacob Faibussowitsch   PetscCall(PetscFree2(dnz, onz));
3048bd041c0cSMatthew G. Knepley   for (field = 0; field < Nf; ++field) {
3049bd041c0cSMatthew G. Knepley     PetscObject      obj;
3050bd041c0cSMatthew G. Knepley     PetscClassId     id;
3051ef0bb6c7SMatthew G. Knepley     PetscTabulation  T, Tfine;
3052bd041c0cSMatthew G. Knepley     PetscQuadrature  quad;
3053bd041c0cSMatthew G. Knepley     const PetscReal *qpoints, *qweights;
3054bd041c0cSMatthew G. Knepley     PetscInt         Nq, Nc, i, d;
3055bd041c0cSMatthew G. Knepley 
30569566063dSJacob Faibussowitsch     PetscCall(PetscDSGetDiscretization(prob, field, &obj));
30579566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetClassId(obj, &id));
3058ef0bb6c7SMatthew G. Knepley     if (id == PETSCFE_CLASSID) {
30599566063dSJacob Faibussowitsch       PetscCall(PetscFEGetQuadrature((PetscFE)obj, &quad));
30609566063dSJacob Faibussowitsch       PetscCall(PetscFEGetCellTabulation((PetscFE)obj, 1, &Tfine));
30619566063dSJacob Faibussowitsch       PetscCall(PetscFECreateTabulation((PetscFE)obj, 1, 1, x, 0, &T));
3062ef0bb6c7SMatthew G. Knepley     } else {
30639566063dSJacob Faibussowitsch       PetscCall(PetscFVGetQuadrature((PetscFV)obj, &quad));
3064ef0bb6c7SMatthew G. Knepley     }
30659566063dSJacob Faibussowitsch     PetscCall(PetscQuadratureGetData(quad, NULL, &Nc, &Nq, &qpoints, &qweights));
3066bd041c0cSMatthew G. Knepley     /* For each fine grid cell */
3067bd041c0cSMatthew G. Knepley     for (cell = cStart; cell < cEnd; ++cell) {
3068bd041c0cSMatthew G. Knepley       Vec                pointVec;
3069bd041c0cSMatthew G. Knepley       PetscScalar       *pV;
3070bd041c0cSMatthew G. Knepley       PetscSF            coarseCellSF = NULL;
3071bd041c0cSMatthew G. Knepley       const PetscSFNode *coarseCells;
3072bd041c0cSMatthew G. Knepley       PetscInt           numCoarseCells, cpdim, q, c, j;
3073bd041c0cSMatthew G. Knepley       PetscInt          *findices, *cindices;
3074bd041c0cSMatthew G. Knepley       PetscInt           numFIndices, numCIndices;
3075bd041c0cSMatthew G. Knepley 
30769566063dSJacob Faibussowitsch       PetscCall(DMPlexGetClosureIndices(dmf, fsection, globalFSection, cell, PETSC_FALSE, &numFIndices, &findices, NULL, NULL));
30779566063dSJacob Faibussowitsch       PetscCall(DMPlexComputeCellGeometryFEM(dmf, cell, NULL, v0, J, invJ, &detJ));
3078bd041c0cSMatthew G. Knepley       /* Get points from the quadrature */
30799566063dSJacob Faibussowitsch       PetscCall(VecCreateSeq(PETSC_COMM_SELF, Nq * dim, &pointVec));
30809566063dSJacob Faibussowitsch       PetscCall(VecSetBlockSize(pointVec, dim));
30819566063dSJacob Faibussowitsch       PetscCall(VecGetArray(pointVec, &pV));
3082bd041c0cSMatthew G. Knepley       for (q = 0; q < Nq; ++q) {
3083c330f8ffSToby Isaac         const PetscReal xi0[3] = {-1., -1., -1.};
3084c330f8ffSToby Isaac 
3085bd041c0cSMatthew G. Knepley         /* Transform point to real space */
3086c330f8ffSToby Isaac         CoordinatesRefToReal(dim, dim, xi0, v0, J, &qpoints[q * dim], x);
3087bd041c0cSMatthew G. Knepley         for (d = 0; d < dim; ++d) pV[q * dim + d] = x[d];
3088bd041c0cSMatthew G. Knepley       }
30899566063dSJacob Faibussowitsch       PetscCall(VecRestoreArray(pointVec, &pV));
3090bd041c0cSMatthew G. Knepley       /* Get set of coarse cells that overlap points (would like to group points by coarse cell) */
30919566063dSJacob Faibussowitsch       PetscCall(DMLocatePoints(dmc, pointVec, DM_POINTLOCATION_NEAREST, &coarseCellSF));
3092bd041c0cSMatthew G. Knepley       /* Update matrix */
30939566063dSJacob Faibussowitsch       PetscCall(PetscSFGetGraph(coarseCellSF, NULL, &numCoarseCells, NULL, &coarseCells));
30945f80ce2aSJacob Faibussowitsch       PetscCheck(numCoarseCells == Nq, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Not all closure points located");
30959566063dSJacob Faibussowitsch       PetscCall(VecGetArray(pointVec, &pV));
3096bd041c0cSMatthew G. Knepley       for (ccell = 0; ccell < numCoarseCells; ++ccell) {
3097bd041c0cSMatthew G. Knepley         PetscReal       pVReal[3];
3098c330f8ffSToby Isaac         const PetscReal xi0[3] = {-1., -1., -1.};
3099c330f8ffSToby Isaac 
31009566063dSJacob Faibussowitsch         PetscCall(DMPlexGetClosureIndices(dmc, csection, globalCSection, coarseCells[ccell].index, PETSC_FALSE, &numCIndices, &cindices, NULL, NULL));
3101bd041c0cSMatthew G. Knepley         /* Transform points from real space to coarse reference space */
31029566063dSJacob Faibussowitsch         PetscCall(DMPlexComputeCellGeometryFEM(dmc, coarseCells[ccell].index, NULL, v0c, Jc, invJc, &detJc));
3103bd041c0cSMatthew G. Knepley         for (d = 0; d < dim; ++d) pVReal[d] = PetscRealPart(pV[ccell * dim + d]);
3104c330f8ffSToby Isaac         CoordinatesRealToRef(dim, dim, xi0, v0c, invJc, pVReal, x);
3105bd041c0cSMatthew G. Knepley 
3106bd041c0cSMatthew G. Knepley         if (id == PETSCFE_CLASSID) {
3107bd041c0cSMatthew G. Knepley           PetscFE fe = (PetscFE)obj;
3108bd041c0cSMatthew G. Knepley 
3109bd041c0cSMatthew G. Knepley           /* Evaluate coarse basis on contained point */
31109566063dSJacob Faibussowitsch           PetscCall(PetscFEGetDimension(fe, &cpdim));
31119566063dSJacob Faibussowitsch           PetscCall(PetscFEComputeTabulation(fe, 1, x, 0, T));
3112bd041c0cSMatthew G. Knepley           /* Get elemMat entries by multiplying by weight */
3113bd041c0cSMatthew G. Knepley           for (i = 0; i < numFIndices; ++i) {
31149566063dSJacob Faibussowitsch             PetscCall(PetscArrayzero(elemMat, cpdim));
3115bd041c0cSMatthew G. Knepley             for (j = 0; j < cpdim; ++j) {
3116ef0bb6c7SMatthew G. Knepley               for (c = 0; c < Nc; ++c) elemMat[j] += T->T[0][j * Nc + c] * Tfine->T[0][(ccell * numFIndices + i) * Nc + c] * qweights[ccell * Nc + c] * detJ;
3117bd041c0cSMatthew G. Knepley             }
3118bd041c0cSMatthew G. Knepley             /* Update interpolator */
31199566063dSJacob Faibussowitsch             if (mesh->printFEM > 1) PetscCall(DMPrintCellMatrix(cell, name, 1, numCIndices, elemMat));
312063a3b9bcSJacob Faibussowitsch             PetscCheck(numCIndices == cpdim, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Number of element matrix columns %" PetscInt_FMT " != %" PetscInt_FMT, numCIndices, cpdim);
31219566063dSJacob Faibussowitsch             PetscCall(MatSetValues(mass, 1, &findices[i], numCIndices, cindices, elemMat, ADD_VALUES));
3122bd041c0cSMatthew G. Knepley           }
3123bd041c0cSMatthew G. Knepley         } else {
3124bd041c0cSMatthew G. Knepley           cpdim = 1;
3125bd041c0cSMatthew G. Knepley           for (i = 0; i < numFIndices; ++i) {
31269566063dSJacob Faibussowitsch             PetscCall(PetscArrayzero(elemMat, cpdim));
3127bd041c0cSMatthew G. Knepley             for (j = 0; j < cpdim; ++j) {
3128bd041c0cSMatthew G. Knepley               for (c = 0; c < Nc; ++c) elemMat[j] += 1.0 * 1.0 * qweights[ccell * Nc + c] * detJ;
3129bd041c0cSMatthew G. Knepley             }
3130bd041c0cSMatthew G. Knepley             /* Update interpolator */
31319566063dSJacob Faibussowitsch             if (mesh->printFEM > 1) PetscCall(DMPrintCellMatrix(cell, name, 1, numCIndices, elemMat));
313263a3b9bcSJacob Faibussowitsch             PetscCall(PetscPrintf(PETSC_COMM_SELF, "Nq: %" PetscInt_FMT " %" PetscInt_FMT " Nf: %" PetscInt_FMT " %" PetscInt_FMT " Nc: %" PetscInt_FMT " %" PetscInt_FMT "\n", ccell, Nq, i, numFIndices, j, numCIndices));
313363a3b9bcSJacob Faibussowitsch             PetscCheck(numCIndices == cpdim, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Number of element matrix columns %" PetscInt_FMT " != %" PetscInt_FMT, numCIndices, cpdim);
31349566063dSJacob Faibussowitsch             PetscCall(MatSetValues(mass, 1, &findices[i], numCIndices, cindices, elemMat, ADD_VALUES));
3135bd041c0cSMatthew G. Knepley           }
3136bd041c0cSMatthew G. Knepley         }
31379566063dSJacob Faibussowitsch         PetscCall(DMPlexRestoreClosureIndices(dmc, csection, globalCSection, coarseCells[ccell].index, PETSC_FALSE, &numCIndices, &cindices, NULL, NULL));
3138bd041c0cSMatthew G. Knepley       }
31399566063dSJacob Faibussowitsch       PetscCall(VecRestoreArray(pointVec, &pV));
31409566063dSJacob Faibussowitsch       PetscCall(PetscSFDestroy(&coarseCellSF));
31419566063dSJacob Faibussowitsch       PetscCall(VecDestroy(&pointVec));
31429566063dSJacob Faibussowitsch       PetscCall(DMPlexRestoreClosureIndices(dmf, fsection, globalFSection, cell, PETSC_FALSE, &numFIndices, &findices, NULL, NULL));
3143bd041c0cSMatthew G. Knepley     }
31449566063dSJacob Faibussowitsch     if (id == PETSCFE_CLASSID) PetscCall(PetscTabulationDestroy(&T));
3145bd041c0cSMatthew G. Knepley   }
31469566063dSJacob Faibussowitsch   PetscCall(PetscFree3(v0, J, invJ));
31479566063dSJacob Faibussowitsch   PetscCall(PetscFree3(v0c, Jc, invJc));
31489566063dSJacob Faibussowitsch   PetscCall(PetscFree(elemMat));
31499566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(mass, MAT_FINAL_ASSEMBLY));
31509566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(mass, MAT_FINAL_ASSEMBLY));
31513ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3152bd041c0cSMatthew G. Knepley }
3153bd041c0cSMatthew G. Knepley 
3154bd041c0cSMatthew G. Knepley /*@
315546fa42a0SMatthew G. Knepley   DMPlexComputeInjectorFEM - Compute a mapping from coarse unknowns to fine unknowns
315646fa42a0SMatthew G. Knepley 
315746fa42a0SMatthew G. Knepley   Input Parameters:
315846fa42a0SMatthew G. Knepley + dmc  - The coarse mesh
315946fa42a0SMatthew G. Knepley - dmf  - The fine mesh
316046fa42a0SMatthew G. Knepley - user - The user context
316146fa42a0SMatthew G. Knepley 
316246fa42a0SMatthew G. Knepley   Output Parameter:
316346fa42a0SMatthew G. Knepley . sc   - The mapping
316446fa42a0SMatthew G. Knepley 
316546fa42a0SMatthew G. Knepley   Level: developer
316646fa42a0SMatthew G. Knepley 
3167a1cb98faSBarry Smith .seealso: [](chapter_unstructured), `DM`, `DMPLEX`, `DMPlexComputeInterpolatorNested()`, `DMPlexComputeJacobianFEM()`
316846fa42a0SMatthew G. Knepley @*/
3169d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeInjectorFEM(DM dmc, DM dmf, VecScatter *sc, void *user)
3170d71ae5a4SJacob Faibussowitsch {
3171e9d4ef1bSMatthew G. Knepley   PetscDS      prob;
31727c927364SMatthew G. Knepley   PetscFE     *feRef;
317397c42addSMatthew G. Knepley   PetscFV     *fvRef;
31747c927364SMatthew G. Knepley   Vec          fv, cv;
31757c927364SMatthew G. Knepley   IS           fis, cis;
31767c927364SMatthew G. Knepley   PetscSection fsection, fglobalSection, csection, cglobalSection;
31777c927364SMatthew G. Knepley   PetscInt    *cmap, *cellCIndices, *cellFIndices, *cindices, *findices;
3178485ad865SMatthew G. Knepley   PetscInt     cTotDim, fTotDim = 0, Nf, f, field, cStart, cEnd, c, dim, d, startC, endC, offsetC, offsetF, m;
31796f3d3cbcSMatthew G. Knepley   PetscBool   *needAvg;
31807c927364SMatthew G. Knepley 
31817c927364SMatthew G. Knepley   PetscFunctionBegin;
31829566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(DMPLEX_InjectorFEM, dmc, dmf, 0, 0));
31839566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dmf, &dim));
31849566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dmf, &fsection));
31859566063dSJacob Faibussowitsch   PetscCall(DMGetGlobalSection(dmf, &fglobalSection));
31869566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dmc, &csection));
31879566063dSJacob Faibussowitsch   PetscCall(DMGetGlobalSection(dmc, &cglobalSection));
31889566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetNumFields(fsection, &Nf));
31899566063dSJacob Faibussowitsch   PetscCall(DMPlexGetSimplexOrBoxCells(dmc, 0, &cStart, &cEnd));
31909566063dSJacob Faibussowitsch   PetscCall(DMGetDS(dmc, &prob));
31919566063dSJacob Faibussowitsch   PetscCall(PetscCalloc3(Nf, &feRef, Nf, &fvRef, Nf, &needAvg));
31927c927364SMatthew G. Knepley   for (f = 0; f < Nf; ++f) {
319397c42addSMatthew G. Knepley     PetscObject  obj;
319497c42addSMatthew G. Knepley     PetscClassId id;
3195aa7890ccSMatthew G. Knepley     PetscInt     fNb = 0, Nc = 0;
31967c927364SMatthew G. Knepley 
31979566063dSJacob Faibussowitsch     PetscCall(PetscDSGetDiscretization(prob, f, &obj));
31989566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetClassId(obj, &id));
319997c42addSMatthew G. Knepley     if (id == PETSCFE_CLASSID) {
320097c42addSMatthew G. Knepley       PetscFE    fe = (PetscFE)obj;
32016f3d3cbcSMatthew G. Knepley       PetscSpace sp;
32029b2fc754SMatthew G. Knepley       PetscInt   maxDegree;
320397c42addSMatthew G. Knepley 
32049566063dSJacob Faibussowitsch       PetscCall(PetscFERefine(fe, &feRef[f]));
32059566063dSJacob Faibussowitsch       PetscCall(PetscFEGetDimension(feRef[f], &fNb));
32069566063dSJacob Faibussowitsch       PetscCall(PetscFEGetNumComponents(fe, &Nc));
32079566063dSJacob Faibussowitsch       PetscCall(PetscFEGetBasisSpace(fe, &sp));
32089566063dSJacob Faibussowitsch       PetscCall(PetscSpaceGetDegree(sp, NULL, &maxDegree));
32099b2fc754SMatthew G. Knepley       if (!maxDegree) needAvg[f] = PETSC_TRUE;
321097c42addSMatthew G. Knepley     } else if (id == PETSCFV_CLASSID) {
321197c42addSMatthew G. Knepley       PetscFV        fv = (PetscFV)obj;
321297c42addSMatthew G. Knepley       PetscDualSpace Q;
321397c42addSMatthew G. Knepley 
32149566063dSJacob Faibussowitsch       PetscCall(PetscFVRefine(fv, &fvRef[f]));
32159566063dSJacob Faibussowitsch       PetscCall(PetscFVGetDualSpace(fvRef[f], &Q));
32169566063dSJacob Faibussowitsch       PetscCall(PetscDualSpaceGetDimension(Q, &fNb));
32179566063dSJacob Faibussowitsch       PetscCall(PetscFVGetNumComponents(fv, &Nc));
32186f3d3cbcSMatthew G. Knepley       needAvg[f] = PETSC_TRUE;
321997c42addSMatthew G. Knepley     }
3220d172c84bSMatthew G. Knepley     fTotDim += fNb;
32217c927364SMatthew G. Knepley   }
32229566063dSJacob Faibussowitsch   PetscCall(PetscDSGetTotalDimension(prob, &cTotDim));
32239566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(cTotDim, &cmap));
32247c927364SMatthew G. Knepley   for (field = 0, offsetC = 0, offsetF = 0; field < Nf; ++field) {
32257c927364SMatthew G. Knepley     PetscFE        feC;
322697c42addSMatthew G. Knepley     PetscFV        fvC;
32277c927364SMatthew G. Knepley     PetscDualSpace QF, QC;
3228d172c84bSMatthew G. Knepley     PetscInt       order = -1, NcF, NcC, fpdim, cpdim;
32297c927364SMatthew G. Knepley 
323097c42addSMatthew G. Knepley     if (feRef[field]) {
32319566063dSJacob Faibussowitsch       PetscCall(PetscDSGetDiscretization(prob, field, (PetscObject *)&feC));
32329566063dSJacob Faibussowitsch       PetscCall(PetscFEGetNumComponents(feC, &NcC));
32339566063dSJacob Faibussowitsch       PetscCall(PetscFEGetNumComponents(feRef[field], &NcF));
32349566063dSJacob Faibussowitsch       PetscCall(PetscFEGetDualSpace(feRef[field], &QF));
32359566063dSJacob Faibussowitsch       PetscCall(PetscDualSpaceGetOrder(QF, &order));
32369566063dSJacob Faibussowitsch       PetscCall(PetscDualSpaceGetDimension(QF, &fpdim));
32379566063dSJacob Faibussowitsch       PetscCall(PetscFEGetDualSpace(feC, &QC));
32389566063dSJacob Faibussowitsch       PetscCall(PetscDualSpaceGetDimension(QC, &cpdim));
323997c42addSMatthew G. Knepley     } else {
32409566063dSJacob Faibussowitsch       PetscCall(PetscDSGetDiscretization(prob, field, (PetscObject *)&fvC));
32419566063dSJacob Faibussowitsch       PetscCall(PetscFVGetNumComponents(fvC, &NcC));
32429566063dSJacob Faibussowitsch       PetscCall(PetscFVGetNumComponents(fvRef[field], &NcF));
32439566063dSJacob Faibussowitsch       PetscCall(PetscFVGetDualSpace(fvRef[field], &QF));
32449566063dSJacob Faibussowitsch       PetscCall(PetscDualSpaceGetDimension(QF, &fpdim));
32459566063dSJacob Faibussowitsch       PetscCall(PetscFVGetDualSpace(fvC, &QC));
32469566063dSJacob Faibussowitsch       PetscCall(PetscDualSpaceGetDimension(QC, &cpdim));
324797c42addSMatthew G. Knepley     }
324863a3b9bcSJacob Faibussowitsch     PetscCheck(NcF == NcC, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of components in fine space field %" PetscInt_FMT " does not match coarse field %" PetscInt_FMT, NcF, NcC);
32497c927364SMatthew G. Knepley     for (c = 0; c < cpdim; ++c) {
32507c927364SMatthew G. Knepley       PetscQuadrature  cfunc;
3251d172c84bSMatthew G. Knepley       const PetscReal *cqpoints, *cqweights;
3252d172c84bSMatthew G. Knepley       PetscInt         NqcC, NpC;
325397c42addSMatthew G. Knepley       PetscBool        found = PETSC_FALSE;
32547c927364SMatthew G. Knepley 
32559566063dSJacob Faibussowitsch       PetscCall(PetscDualSpaceGetFunctional(QC, c, &cfunc));
32569566063dSJacob Faibussowitsch       PetscCall(PetscQuadratureGetData(cfunc, NULL, &NqcC, &NpC, &cqpoints, &cqweights));
325763a3b9bcSJacob Faibussowitsch       PetscCheck(NqcC == NcC, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of quadrature components %" PetscInt_FMT " must match number of field components %" PetscInt_FMT, NqcC, NcC);
32581dca8a05SBarry Smith       PetscCheck(NpC == 1 || !feRef[field], PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Do not know how to do injection for moments");
32597c927364SMatthew G. Knepley       for (f = 0; f < fpdim; ++f) {
32607c927364SMatthew G. Knepley         PetscQuadrature  ffunc;
3261d172c84bSMatthew G. Knepley         const PetscReal *fqpoints, *fqweights;
32627c927364SMatthew G. Knepley         PetscReal        sum = 0.0;
3263d172c84bSMatthew G. Knepley         PetscInt         NqcF, NpF;
32647c927364SMatthew G. Knepley 
32659566063dSJacob Faibussowitsch         PetscCall(PetscDualSpaceGetFunctional(QF, f, &ffunc));
32669566063dSJacob Faibussowitsch         PetscCall(PetscQuadratureGetData(ffunc, NULL, &NqcF, &NpF, &fqpoints, &fqweights));
326763a3b9bcSJacob Faibussowitsch         PetscCheck(NqcF == NcF, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of quadrature components %" PetscInt_FMT " must match number of field components %" PetscInt_FMT, NqcF, NcF);
32687c927364SMatthew G. Knepley         if (NpC != NpF) continue;
32697c927364SMatthew G. Knepley         for (d = 0; d < dim; ++d) sum += PetscAbsReal(cqpoints[d] - fqpoints[d]);
32707c927364SMatthew G. Knepley         if (sum > 1.0e-9) continue;
3271d172c84bSMatthew G. Knepley         for (d = 0; d < NcC; ++d) sum += PetscAbsReal(cqweights[d] * fqweights[d]);
3272d172c84bSMatthew G. Knepley         if (sum < 1.0e-9) continue;
3273d172c84bSMatthew G. Knepley         cmap[offsetC + c] = offsetF + f;
327497c42addSMatthew G. Knepley         found             = PETSC_TRUE;
32757c927364SMatthew G. Knepley         break;
32767c927364SMatthew G. Knepley       }
327797c42addSMatthew G. Knepley       if (!found) {
327897c42addSMatthew G. Knepley         /* TODO We really want the average here, but some asshole put VecScatter in the interface */
3279d172c84bSMatthew G. Knepley         if (fvRef[field] || (feRef[field] && order == 0)) {
3280d172c84bSMatthew G. Knepley           cmap[offsetC + c] = offsetF + 0;
328197c42addSMatthew G. Knepley         } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Could not locate matching functional for injection");
328297c42addSMatthew G. Knepley       }
32837c927364SMatthew G. Knepley     }
3284d172c84bSMatthew G. Knepley     offsetC += cpdim;
3285d172c84bSMatthew G. Knepley     offsetF += fpdim;
32867c927364SMatthew G. Knepley   }
32879371c9d4SSatish Balay   for (f = 0; f < Nf; ++f) {
32889371c9d4SSatish Balay     PetscCall(PetscFEDestroy(&feRef[f]));
32899371c9d4SSatish Balay     PetscCall(PetscFVDestroy(&fvRef[f]));
32909371c9d4SSatish Balay   }
32919566063dSJacob Faibussowitsch   PetscCall(PetscFree3(feRef, fvRef, needAvg));
32927c927364SMatthew G. Knepley 
32939566063dSJacob Faibussowitsch   PetscCall(DMGetGlobalVector(dmf, &fv));
32949566063dSJacob Faibussowitsch   PetscCall(DMGetGlobalVector(dmc, &cv));
32959566063dSJacob Faibussowitsch   PetscCall(VecGetOwnershipRange(cv, &startC, &endC));
32969566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetConstrainedStorageSize(cglobalSection, &m));
32979566063dSJacob Faibussowitsch   PetscCall(PetscMalloc2(cTotDim, &cellCIndices, fTotDim, &cellFIndices));
32989566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(m, &cindices));
32999566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(m, &findices));
33007c927364SMatthew G. Knepley   for (d = 0; d < m; ++d) cindices[d] = findices[d] = -1;
33017c927364SMatthew G. Knepley   for (c = cStart; c < cEnd; ++c) {
33029566063dSJacob Faibussowitsch     PetscCall(DMPlexMatGetClosureIndicesRefined(dmf, fsection, fglobalSection, dmc, csection, cglobalSection, c, cellCIndices, cellFIndices));
33037c927364SMatthew G. Knepley     for (d = 0; d < cTotDim; ++d) {
33040bd915a7SMatthew G. Knepley       if ((cellCIndices[d] < startC) || (cellCIndices[d] >= endC)) continue;
330563a3b9bcSJacob Faibussowitsch       PetscCheck(!(findices[cellCIndices[d] - startC] >= 0) || !(findices[cellCIndices[d] - startC] != cellFIndices[cmap[d]]), PETSC_COMM_SELF, PETSC_ERR_PLIB, "Coarse dof %" PetscInt_FMT " maps to both %" PetscInt_FMT " and %" PetscInt_FMT, cindices[cellCIndices[d] - startC], findices[cellCIndices[d] - startC], cellFIndices[cmap[d]]);
33067c927364SMatthew G. Knepley       cindices[cellCIndices[d] - startC] = cellCIndices[d];
33077c927364SMatthew G. Knepley       findices[cellCIndices[d] - startC] = cellFIndices[cmap[d]];
33087c927364SMatthew G. Knepley     }
33097c927364SMatthew G. Knepley   }
33109566063dSJacob Faibussowitsch   PetscCall(PetscFree(cmap));
33119566063dSJacob Faibussowitsch   PetscCall(PetscFree2(cellCIndices, cellFIndices));
33127c927364SMatthew G. Knepley 
33139566063dSJacob Faibussowitsch   PetscCall(ISCreateGeneral(PETSC_COMM_SELF, m, cindices, PETSC_OWN_POINTER, &cis));
33149566063dSJacob Faibussowitsch   PetscCall(ISCreateGeneral(PETSC_COMM_SELF, m, findices, PETSC_OWN_POINTER, &fis));
33159566063dSJacob Faibussowitsch   PetscCall(VecScatterCreate(cv, cis, fv, fis, sc));
33169566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&cis));
33179566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&fis));
33189566063dSJacob Faibussowitsch   PetscCall(DMRestoreGlobalVector(dmf, &fv));
33199566063dSJacob Faibussowitsch   PetscCall(DMRestoreGlobalVector(dmc, &cv));
33209566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(DMPLEX_InjectorFEM, dmc, dmf, 0, 0));
33213ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3322cb1e1211SMatthew G Knepley }
3323a1cf66bbSMatthew G. Knepley 
33242f856554SMatthew G. Knepley /*@C
33252f856554SMatthew G. Knepley   DMPlexGetCellFields - Retrieve the field values values for a chunk of cells
33262f856554SMatthew G. Knepley 
33272f856554SMatthew G. Knepley   Input Parameters:
3328a1cb98faSBarry Smith + dm     - The `DM`
33292f856554SMatthew G. Knepley . cellIS - The cells to include
33302f856554SMatthew G. Knepley . locX   - A local vector with the solution fields
33312f856554SMatthew G. Knepley . locX_t - A local vector with solution field time derivatives, or NULL
33322f856554SMatthew G. Knepley - locA   - A local vector with auxiliary fields, or NULL
33332f856554SMatthew G. Knepley 
33342f856554SMatthew G. Knepley   Output Parameters:
33352f856554SMatthew G. Knepley + u   - The field coefficients
33362f856554SMatthew G. Knepley . u_t - The fields derivative coefficients
33372f856554SMatthew G. Knepley - a   - The auxiliary field coefficients
33382f856554SMatthew G. Knepley 
33392f856554SMatthew G. Knepley   Level: developer
33402f856554SMatthew G. Knepley 
3341a1cb98faSBarry Smith .seealso: [](chapter_unstructured), `DM`, `DMPLEX`, `DMPlexGetFaceFields()`
33422f856554SMatthew G. Knepley @*/
3343d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexGetCellFields(DM dm, IS cellIS, Vec locX, Vec locX_t, Vec locA, PetscScalar **u, PetscScalar **u_t, PetscScalar **a)
3344d71ae5a4SJacob Faibussowitsch {
33452f856554SMatthew G. Knepley   DM              plex, plexA = NULL;
3346a6e0b375SMatthew G. Knepley   DMEnclosureType encAux;
33472f856554SMatthew G. Knepley   PetscSection    section, sectionAux;
33482f856554SMatthew G. Knepley   PetscDS         prob;
33492f856554SMatthew G. Knepley   const PetscInt *cells;
33502f856554SMatthew G. Knepley   PetscInt        cStart, cEnd, numCells, totDim, totDimAux, c;
33512f856554SMatthew G. Knepley 
33522f856554SMatthew G. Knepley   PetscFunctionBegin;
33532f856554SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
3354064a246eSJacob Faibussowitsch   PetscValidHeaderSpecific(locX, VEC_CLASSID, 3);
3355ad540459SPierre Jolivet   if (locX_t) PetscValidHeaderSpecific(locX_t, VEC_CLASSID, 4);
3356ad540459SPierre Jolivet   if (locA) PetscValidHeaderSpecific(locA, VEC_CLASSID, 5);
3357064a246eSJacob Faibussowitsch   PetscValidPointer(u, 6);
3358064a246eSJacob Faibussowitsch   PetscValidPointer(u_t, 7);
3359064a246eSJacob Faibussowitsch   PetscValidPointer(a, 8);
33609566063dSJacob Faibussowitsch   PetscCall(DMPlexConvertPlex(dm, &plex, PETSC_FALSE));
33619566063dSJacob Faibussowitsch   PetscCall(ISGetPointRange(cellIS, &cStart, &cEnd, &cells));
33629566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dm, &section));
33639566063dSJacob Faibussowitsch   PetscCall(DMGetCellDS(dm, cells ? cells[cStart] : cStart, &prob));
33649566063dSJacob Faibussowitsch   PetscCall(PetscDSGetTotalDimension(prob, &totDim));
33652f856554SMatthew G. Knepley   if (locA) {
33662f856554SMatthew G. Knepley     DM      dmAux;
33672f856554SMatthew G. Knepley     PetscDS probAux;
33682f856554SMatthew G. Knepley 
33699566063dSJacob Faibussowitsch     PetscCall(VecGetDM(locA, &dmAux));
33709566063dSJacob Faibussowitsch     PetscCall(DMGetEnclosureRelation(dmAux, dm, &encAux));
33719566063dSJacob Faibussowitsch     PetscCall(DMPlexConvertPlex(dmAux, &plexA, PETSC_FALSE));
33729566063dSJacob Faibussowitsch     PetscCall(DMGetLocalSection(dmAux, &sectionAux));
33739566063dSJacob Faibussowitsch     PetscCall(DMGetDS(dmAux, &probAux));
33749566063dSJacob Faibussowitsch     PetscCall(PetscDSGetTotalDimension(probAux, &totDimAux));
33752f856554SMatthew G. Knepley   }
33762f856554SMatthew G. Knepley   numCells = cEnd - cStart;
33779566063dSJacob Faibussowitsch   PetscCall(DMGetWorkArray(dm, numCells * totDim, MPIU_SCALAR, u));
33789371c9d4SSatish Balay   if (locX_t) PetscCall(DMGetWorkArray(dm, numCells * totDim, MPIU_SCALAR, u_t));
3379ad540459SPierre Jolivet   else *u_t = NULL;
33809371c9d4SSatish Balay   if (locA) PetscCall(DMGetWorkArray(dm, numCells * totDimAux, MPIU_SCALAR, a));
3381ad540459SPierre Jolivet   else *a = NULL;
33822f856554SMatthew G. Knepley   for (c = cStart; c < cEnd; ++c) {
33832f856554SMatthew G. Knepley     const PetscInt cell = cells ? cells[c] : c;
33842f856554SMatthew G. Knepley     const PetscInt cind = c - cStart;
33852f856554SMatthew G. Knepley     PetscScalar   *x = NULL, *x_t = NULL, *ul = *u, *ul_t = *u_t, *al = *a;
33862f856554SMatthew G. Knepley     PetscInt       i;
33872f856554SMatthew G. Knepley 
33889566063dSJacob Faibussowitsch     PetscCall(DMPlexVecGetClosure(plex, section, locX, cell, NULL, &x));
33892f856554SMatthew G. Knepley     for (i = 0; i < totDim; ++i) ul[cind * totDim + i] = x[i];
33909566063dSJacob Faibussowitsch     PetscCall(DMPlexVecRestoreClosure(plex, section, locX, cell, NULL, &x));
33912f856554SMatthew G. Knepley     if (locX_t) {
33929566063dSJacob Faibussowitsch       PetscCall(DMPlexVecGetClosure(plex, section, locX_t, cell, NULL, &x_t));
33932f856554SMatthew G. Knepley       for (i = 0; i < totDim; ++i) ul_t[cind * totDim + i] = x_t[i];
33949566063dSJacob Faibussowitsch       PetscCall(DMPlexVecRestoreClosure(plex, section, locX_t, cell, NULL, &x_t));
33952f856554SMatthew G. Knepley     }
33962f856554SMatthew G. Knepley     if (locA) {
33972f856554SMatthew G. Knepley       PetscInt subcell;
33989566063dSJacob Faibussowitsch       PetscCall(DMGetEnclosurePoint(plexA, dm, encAux, cell, &subcell));
33999566063dSJacob Faibussowitsch       PetscCall(DMPlexVecGetClosure(plexA, sectionAux, locA, subcell, NULL, &x));
34002f856554SMatthew G. Knepley       for (i = 0; i < totDimAux; ++i) al[cind * totDimAux + i] = x[i];
34019566063dSJacob Faibussowitsch       PetscCall(DMPlexVecRestoreClosure(plexA, sectionAux, locA, subcell, NULL, &x));
34022f856554SMatthew G. Knepley     }
34032f856554SMatthew G. Knepley   }
34049566063dSJacob Faibussowitsch   PetscCall(DMDestroy(&plex));
34059566063dSJacob Faibussowitsch   if (locA) PetscCall(DMDestroy(&plexA));
34069566063dSJacob Faibussowitsch   PetscCall(ISRestorePointRange(cellIS, &cStart, &cEnd, &cells));
34073ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
34082f856554SMatthew G. Knepley }
34092f856554SMatthew G. Knepley 
34102f856554SMatthew G. Knepley /*@C
34112f856554SMatthew G. Knepley   DMPlexRestoreCellFields - Restore the field values values for a chunk of cells
34122f856554SMatthew G. Knepley 
34132f856554SMatthew G. Knepley   Input Parameters:
3414a1cb98faSBarry Smith + dm     - The `DM`
34152f856554SMatthew G. Knepley . cellIS - The cells to include
34162f856554SMatthew G. Knepley . locX   - A local vector with the solution fields
34172f856554SMatthew G. Knepley . locX_t - A local vector with solution field time derivatives, or NULL
34182f856554SMatthew G. Knepley - locA   - A local vector with auxiliary fields, or NULL
34192f856554SMatthew G. Knepley 
34202f856554SMatthew G. Knepley   Output Parameters:
34212f856554SMatthew G. Knepley + u   - The field coefficients
34222f856554SMatthew G. Knepley . u_t - The fields derivative coefficients
34232f856554SMatthew G. Knepley - a   - The auxiliary field coefficients
34242f856554SMatthew G. Knepley 
34252f856554SMatthew G. Knepley   Level: developer
34262f856554SMatthew G. Knepley 
3427a1cb98faSBarry Smith .seealso: [](chapter_unstructured), `DM`, `DMPLEX`, `DMPlexGetFaceFields()`
34282f856554SMatthew G. Knepley @*/
3429d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexRestoreCellFields(DM dm, IS cellIS, Vec locX, Vec locX_t, Vec locA, PetscScalar **u, PetscScalar **u_t, PetscScalar **a)
3430d71ae5a4SJacob Faibussowitsch {
34312f856554SMatthew G. Knepley   PetscFunctionBegin;
34329566063dSJacob Faibussowitsch   PetscCall(DMRestoreWorkArray(dm, 0, MPIU_SCALAR, u));
34339566063dSJacob Faibussowitsch   if (locX_t) PetscCall(DMRestoreWorkArray(dm, 0, MPIU_SCALAR, u_t));
34349566063dSJacob Faibussowitsch   if (locA) PetscCall(DMRestoreWorkArray(dm, 0, MPIU_SCALAR, a));
34353ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
34362f856554SMatthew G. Knepley }
34372f856554SMatthew G. Knepley 
3438faff4f7fSMatthew G. Knepley /*
3439faff4f7fSMatthew G. Knepley   Get the auxiliary field vectors for the negative side (s = 0) and positive side (s = 1) of the interfaace
3440faff4f7fSMatthew G. Knepley */
3441d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexGetHybridAuxFields(DM dm, DM dmAux[], PetscDS dsAux[], IS cellIS, Vec locA[], PetscScalar *a[])
3442d71ae5a4SJacob Faibussowitsch {
344304c51a94SMatthew G. Knepley   DM              plexA[2];
3444148442b3SMatthew G. Knepley   DMEnclosureType encAux[2];
344504c51a94SMatthew G. Knepley   PetscSection    sectionAux[2];
34466528b96dSMatthew G. Knepley   const PetscInt *cells;
3447148442b3SMatthew G. Knepley   PetscInt        cStart, cEnd, numCells, c, s, totDimAux[2];
34486528b96dSMatthew G. Knepley 
34496528b96dSMatthew G. Knepley   PetscFunctionBegin;
3450148442b3SMatthew G. Knepley   PetscValidPointer(locA, 5);
34513ba16761SJacob Faibussowitsch   if (!locA[0] || !locA[1]) PetscFunctionReturn(PETSC_SUCCESS);
3452148442b3SMatthew G. Knepley   PetscValidPointer(dmAux, 2);
3453148442b3SMatthew G. Knepley   PetscValidPointer(dsAux, 3);
3454148442b3SMatthew G. Knepley   PetscValidPointer(a, 6);
34559566063dSJacob Faibussowitsch   PetscCall(ISGetPointRange(cellIS, &cStart, &cEnd, &cells));
34566528b96dSMatthew G. Knepley   numCells = cEnd - cStart;
3457148442b3SMatthew G. Knepley   for (s = 0; s < 2; ++s) {
3458148442b3SMatthew G. Knepley     PetscValidHeaderSpecific(dmAux[s], DM_CLASSID, 2);
3459148442b3SMatthew G. Knepley     PetscValidHeaderSpecific(dsAux[s], PETSCDS_CLASSID, 3);
3460148442b3SMatthew G. Knepley     PetscValidHeaderSpecific(locA[s], VEC_CLASSID, 5);
34619566063dSJacob Faibussowitsch     PetscCall(DMPlexConvertPlex(dmAux[s], &plexA[s], PETSC_FALSE));
34629566063dSJacob Faibussowitsch     PetscCall(DMGetEnclosureRelation(dmAux[s], dm, &encAux[s]));
34639566063dSJacob Faibussowitsch     PetscCall(DMGetLocalSection(dmAux[s], &sectionAux[s]));
34649566063dSJacob Faibussowitsch     PetscCall(PetscDSGetTotalDimension(dsAux[s], &totDimAux[s]));
34659566063dSJacob Faibussowitsch     PetscCall(DMGetWorkArray(dmAux[s], numCells * totDimAux[s], MPIU_SCALAR, &a[s]));
346604c51a94SMatthew G. Knepley   }
3467148442b3SMatthew G. Knepley   for (c = cStart; c < cEnd; ++c) {
34686528b96dSMatthew G. Knepley     const PetscInt  cell = cells ? cells[c] : c;
34696528b96dSMatthew G. Knepley     const PetscInt  cind = c - cStart;
34706528b96dSMatthew G. Knepley     const PetscInt *cone, *ornt;
34716528b96dSMatthew G. Knepley 
34729566063dSJacob Faibussowitsch     PetscCall(DMPlexGetCone(dm, cell, &cone));
34739566063dSJacob Faibussowitsch     PetscCall(DMPlexGetConeOrientation(dm, cell, &ornt));
3474148442b3SMatthew G. Knepley     for (s = 0; s < 2; ++s) {
34755fedec97SMatthew G. Knepley       const PetscInt *support;
3476148442b3SMatthew G. Knepley       PetscScalar    *x = NULL, *al = a[s];
3477148442b3SMatthew G. Knepley       const PetscInt  tdA = totDimAux[s];
34785fedec97SMatthew G. Knepley       PetscInt        ssize, scell;
3479148442b3SMatthew G. Knepley       PetscInt        subface, Na, i;
34806528b96dSMatthew G. Knepley 
34819566063dSJacob Faibussowitsch       PetscCall(DMPlexGetSupport(dm, cone[s], &support));
34829566063dSJacob Faibussowitsch       PetscCall(DMPlexGetSupportSize(dm, cone[s], &ssize));
348363a3b9bcSJacob Faibussowitsch       PetscCheck(ssize == 2, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Face %" PetscInt_FMT " from cell %" PetscInt_FMT " has support size %" PetscInt_FMT " != 2", cone[s], cell, ssize);
34845fedec97SMatthew G. Knepley       if (support[0] == cell) scell = support[1];
34855fedec97SMatthew G. Knepley       else if (support[1] == cell) scell = support[0];
348663a3b9bcSJacob Faibussowitsch       else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Face %" PetscInt_FMT " does not have cell %" PetscInt_FMT " in its support", cone[s], cell);
34875fedec97SMatthew G. Knepley 
34889566063dSJacob Faibussowitsch       PetscCall(DMGetEnclosurePoint(plexA[s], dm, encAux[s], scell, &subface));
34899566063dSJacob Faibussowitsch       PetscCall(DMPlexVecGetClosure(plexA[s], sectionAux[s], locA[s], subface, &Na, &x));
34906528b96dSMatthew G. Knepley       for (i = 0; i < Na; ++i) al[cind * tdA + i] = x[i];
34919566063dSJacob Faibussowitsch       PetscCall(DMPlexVecRestoreClosure(plexA[s], sectionAux[s], locA[s], subface, &Na, &x));
34926528b96dSMatthew G. Knepley     }
34936528b96dSMatthew G. Knepley   }
34949566063dSJacob Faibussowitsch   for (s = 0; s < 2; ++s) PetscCall(DMDestroy(&plexA[s]));
34959566063dSJacob Faibussowitsch   PetscCall(ISRestorePointRange(cellIS, &cStart, &cEnd, &cells));
34963ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
34976528b96dSMatthew G. Knepley }
34986528b96dSMatthew G. Knepley 
3499d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexRestoreHybridAuxFields(DM dmAux[], PetscDS dsAux[], IS cellIS, Vec locA[], PetscScalar *a[])
3500d71ae5a4SJacob Faibussowitsch {
35016528b96dSMatthew G. Knepley   PetscFunctionBegin;
35023ba16761SJacob Faibussowitsch   if (!locA[0] || !locA[1]) PetscFunctionReturn(PETSC_SUCCESS);
35039566063dSJacob Faibussowitsch   PetscCall(DMRestoreWorkArray(dmAux[0], 0, MPIU_SCALAR, &a[0]));
35049566063dSJacob Faibussowitsch   PetscCall(DMRestoreWorkArray(dmAux[1], 0, MPIU_SCALAR, &a[1]));
35053ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
35066528b96dSMatthew G. Knepley }
35076528b96dSMatthew G. Knepley 
35082f856554SMatthew G. Knepley /*@C
35092f856554SMatthew G. Knepley   DMPlexGetFaceFields - Retrieve the field values values for a chunk of faces
35102f856554SMatthew G. Knepley 
35112f856554SMatthew G. Knepley   Input Parameters:
3512a1cb98faSBarry Smith + dm     - The `DM`
35132f856554SMatthew G. Knepley . fStart - The first face to include
35142f856554SMatthew G. Knepley . fEnd   - The first face to exclude
35152f856554SMatthew G. Knepley . locX   - A local vector with the solution fields
35162f856554SMatthew G. Knepley . locX_t - A local vector with solution field time derivatives, or NULL
35172f856554SMatthew G. Knepley . faceGeometry - A local vector with face geometry
35182f856554SMatthew G. Knepley . cellGeometry - A local vector with cell geometry
35192f856554SMatthew G. Knepley - locaGrad - A local vector with field gradients, or NULL
35202f856554SMatthew G. Knepley 
35212f856554SMatthew G. Knepley   Output Parameters:
35222f856554SMatthew G. Knepley + Nface - The number of faces with field values
35232f856554SMatthew G. Knepley . uL - The field values at the left side of the face
35242f856554SMatthew G. Knepley - uR - The field values at the right side of the face
35252f856554SMatthew G. Knepley 
35262f856554SMatthew G. Knepley   Level: developer
35272f856554SMatthew G. Knepley 
3528a1cb98faSBarry Smith .seealso: [](chapter_unstructured), `DM`, `DMPLEX`, `DMPlexGetCellFields()`
35292f856554SMatthew G. Knepley @*/
3530d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexGetFaceFields(DM dm, PetscInt fStart, PetscInt fEnd, Vec locX, Vec locX_t, Vec faceGeometry, Vec cellGeometry, Vec locGrad, PetscInt *Nface, PetscScalar **uL, PetscScalar **uR)
3531d71ae5a4SJacob Faibussowitsch {
35322f856554SMatthew G. Knepley   DM                 dmFace, dmCell, dmGrad = NULL;
35332f856554SMatthew G. Knepley   PetscSection       section;
35342f856554SMatthew G. Knepley   PetscDS            prob;
35352f856554SMatthew G. Knepley   DMLabel            ghostLabel;
35362f856554SMatthew G. Knepley   const PetscScalar *facegeom, *cellgeom, *x, *lgrad;
35372f856554SMatthew G. Knepley   PetscBool         *isFE;
35382f856554SMatthew G. Knepley   PetscInt           dim, Nf, f, Nc, numFaces = fEnd - fStart, iface, face;
35392f856554SMatthew G. Knepley 
35402f856554SMatthew G. Knepley   PetscFunctionBegin;
35412f856554SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
35422f856554SMatthew G. Knepley   PetscValidHeaderSpecific(locX, VEC_CLASSID, 4);
3543ad540459SPierre Jolivet   if (locX_t) PetscValidHeaderSpecific(locX_t, VEC_CLASSID, 5);
35442f856554SMatthew G. Knepley   PetscValidHeaderSpecific(faceGeometry, VEC_CLASSID, 6);
35452f856554SMatthew G. Knepley   PetscValidHeaderSpecific(cellGeometry, VEC_CLASSID, 7);
3546ad540459SPierre Jolivet   if (locGrad) PetscValidHeaderSpecific(locGrad, VEC_CLASSID, 8);
3547064a246eSJacob Faibussowitsch   PetscValidPointer(uL, 10);
3548064a246eSJacob Faibussowitsch   PetscValidPointer(uR, 11);
35499566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dm, &dim));
35509566063dSJacob Faibussowitsch   PetscCall(DMGetDS(dm, &prob));
35519566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dm, &section));
35529566063dSJacob Faibussowitsch   PetscCall(PetscDSGetNumFields(prob, &Nf));
35539566063dSJacob Faibussowitsch   PetscCall(PetscDSGetTotalComponents(prob, &Nc));
35549566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(Nf, &isFE));
35552f856554SMatthew G. Knepley   for (f = 0; f < Nf; ++f) {
35562f856554SMatthew G. Knepley     PetscObject  obj;
35572f856554SMatthew G. Knepley     PetscClassId id;
35582f856554SMatthew G. Knepley 
35599566063dSJacob Faibussowitsch     PetscCall(PetscDSGetDiscretization(prob, f, &obj));
35609566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetClassId(obj, &id));
35619371c9d4SSatish Balay     if (id == PETSCFE_CLASSID) {
35629371c9d4SSatish Balay       isFE[f] = PETSC_TRUE;
35639371c9d4SSatish Balay     } else if (id == PETSCFV_CLASSID) {
35649371c9d4SSatish Balay       isFE[f] = PETSC_FALSE;
35659371c9d4SSatish Balay     } else {
35669371c9d4SSatish Balay       isFE[f] = PETSC_FALSE;
35679371c9d4SSatish Balay     }
35682f856554SMatthew G. Knepley   }
35699566063dSJacob Faibussowitsch   PetscCall(DMGetLabel(dm, "ghost", &ghostLabel));
35709566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(locX, &x));
35719566063dSJacob Faibussowitsch   PetscCall(VecGetDM(faceGeometry, &dmFace));
35729566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(faceGeometry, &facegeom));
35739566063dSJacob Faibussowitsch   PetscCall(VecGetDM(cellGeometry, &dmCell));
35749566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(cellGeometry, &cellgeom));
35752f856554SMatthew G. Knepley   if (locGrad) {
35769566063dSJacob Faibussowitsch     PetscCall(VecGetDM(locGrad, &dmGrad));
35779566063dSJacob Faibussowitsch     PetscCall(VecGetArrayRead(locGrad, &lgrad));
35782f856554SMatthew G. Knepley   }
35799566063dSJacob Faibussowitsch   PetscCall(DMGetWorkArray(dm, numFaces * Nc, MPIU_SCALAR, uL));
35809566063dSJacob Faibussowitsch   PetscCall(DMGetWorkArray(dm, numFaces * Nc, MPIU_SCALAR, uR));
35812f856554SMatthew G. Knepley   /* Right now just eat the extra work for FE (could make a cell loop) */
35822f856554SMatthew G. Knepley   for (face = fStart, iface = 0; face < fEnd; ++face) {
35832f856554SMatthew G. Knepley     const PetscInt  *cells;
35842f856554SMatthew G. Knepley     PetscFVFaceGeom *fg;
35852f856554SMatthew G. Knepley     PetscFVCellGeom *cgL, *cgR;
35862f856554SMatthew G. Knepley     PetscScalar     *xL, *xR, *gL, *gR;
35872f856554SMatthew G. Knepley     PetscScalar     *uLl = *uL, *uRl = *uR;
35882f856554SMatthew G. Knepley     PetscInt         ghost, nsupp, nchild;
35892f856554SMatthew G. Knepley 
35909566063dSJacob Faibussowitsch     PetscCall(DMLabelGetValue(ghostLabel, face, &ghost));
35919566063dSJacob Faibussowitsch     PetscCall(DMPlexGetSupportSize(dm, face, &nsupp));
35929566063dSJacob Faibussowitsch     PetscCall(DMPlexGetTreeChildren(dm, face, &nchild, NULL));
35932f856554SMatthew G. Knepley     if (ghost >= 0 || nsupp > 2 || nchild > 0) continue;
35949566063dSJacob Faibussowitsch     PetscCall(DMPlexPointLocalRead(dmFace, face, facegeom, &fg));
35959566063dSJacob Faibussowitsch     PetscCall(DMPlexGetSupport(dm, face, &cells));
35969566063dSJacob Faibussowitsch     PetscCall(DMPlexPointLocalRead(dmCell, cells[0], cellgeom, &cgL));
35979566063dSJacob Faibussowitsch     PetscCall(DMPlexPointLocalRead(dmCell, cells[1], cellgeom, &cgR));
35982f856554SMatthew G. Knepley     for (f = 0; f < Nf; ++f) {
35992f856554SMatthew G. Knepley       PetscInt off;
36002f856554SMatthew G. Knepley 
36019566063dSJacob Faibussowitsch       PetscCall(PetscDSGetComponentOffset(prob, f, &off));
36022f856554SMatthew G. Knepley       if (isFE[f]) {
36032f856554SMatthew G. Knepley         const PetscInt *cone;
36042f856554SMatthew G. Knepley         PetscInt        comp, coneSizeL, coneSizeR, faceLocL, faceLocR, ldof, rdof, d;
36052f856554SMatthew G. Knepley 
36062f856554SMatthew G. Knepley         xL = xR = NULL;
36079566063dSJacob Faibussowitsch         PetscCall(PetscSectionGetFieldComponents(section, f, &comp));
36089566063dSJacob Faibussowitsch         PetscCall(DMPlexVecGetClosure(dm, section, locX, cells[0], &ldof, (PetscScalar **)&xL));
36099566063dSJacob Faibussowitsch         PetscCall(DMPlexVecGetClosure(dm, section, locX, cells[1], &rdof, (PetscScalar **)&xR));
36109566063dSJacob Faibussowitsch         PetscCall(DMPlexGetCone(dm, cells[0], &cone));
36119566063dSJacob Faibussowitsch         PetscCall(DMPlexGetConeSize(dm, cells[0], &coneSizeL));
36129371c9d4SSatish Balay         for (faceLocL = 0; faceLocL < coneSizeL; ++faceLocL)
36139371c9d4SSatish Balay           if (cone[faceLocL] == face) break;
36149566063dSJacob Faibussowitsch         PetscCall(DMPlexGetCone(dm, cells[1], &cone));
36159566063dSJacob Faibussowitsch         PetscCall(DMPlexGetConeSize(dm, cells[1], &coneSizeR));
36169371c9d4SSatish Balay         for (faceLocR = 0; faceLocR < coneSizeR; ++faceLocR)
36179371c9d4SSatish Balay           if (cone[faceLocR] == face) break;
36181dca8a05SBarry Smith         PetscCheck(faceLocL != coneSizeL || faceLocR != coneSizeR, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Could not find face %" PetscInt_FMT " in cone of cell %" PetscInt_FMT " or cell %" PetscInt_FMT, face, cells[0], cells[1]);
36192f856554SMatthew G. Knepley         /* Check that FEM field has values in the right cell (sometimes its an FV ghost cell) */
36202f856554SMatthew G. Knepley         /* TODO: this is a hack that might not be right for nonconforming */
36212f856554SMatthew G. Knepley         if (faceLocL < coneSizeL) {
36229566063dSJacob Faibussowitsch           PetscCall(PetscFEEvaluateFaceFields_Internal(prob, f, faceLocL, xL, &uLl[iface * Nc + off]));
36239566063dSJacob Faibussowitsch           if (rdof == ldof && faceLocR < coneSizeR) PetscCall(PetscFEEvaluateFaceFields_Internal(prob, f, faceLocR, xR, &uRl[iface * Nc + off]));
36242f856554SMatthew G. Knepley           else {
36259371c9d4SSatish Balay             for (d = 0; d < comp; ++d) uRl[iface * Nc + off + d] = uLl[iface * Nc + off + d];
36269371c9d4SSatish Balay           }
36279371c9d4SSatish Balay         } else {
36289566063dSJacob Faibussowitsch           PetscCall(PetscFEEvaluateFaceFields_Internal(prob, f, faceLocR, xR, &uRl[iface * Nc + off]));
36299566063dSJacob Faibussowitsch           PetscCall(PetscSectionGetFieldComponents(section, f, &comp));
36302f856554SMatthew G. Knepley           for (d = 0; d < comp; ++d) uLl[iface * Nc + off + d] = uRl[iface * Nc + off + d];
36312f856554SMatthew G. Knepley         }
36329566063dSJacob Faibussowitsch         PetscCall(DMPlexVecRestoreClosure(dm, section, locX, cells[0], &ldof, (PetscScalar **)&xL));
36339566063dSJacob Faibussowitsch         PetscCall(DMPlexVecRestoreClosure(dm, section, locX, cells[1], &rdof, (PetscScalar **)&xR));
36342f856554SMatthew G. Knepley       } else {
36352f856554SMatthew G. Knepley         PetscFV  fv;
36362f856554SMatthew G. Knepley         PetscInt numComp, c;
36372f856554SMatthew G. Knepley 
36389566063dSJacob Faibussowitsch         PetscCall(PetscDSGetDiscretization(prob, f, (PetscObject *)&fv));
36399566063dSJacob Faibussowitsch         PetscCall(PetscFVGetNumComponents(fv, &numComp));
36409566063dSJacob Faibussowitsch         PetscCall(DMPlexPointLocalFieldRead(dm, cells[0], f, x, &xL));
36419566063dSJacob Faibussowitsch         PetscCall(DMPlexPointLocalFieldRead(dm, cells[1], f, x, &xR));
36422f856554SMatthew G. Knepley         if (dmGrad) {
36432f856554SMatthew G. Knepley           PetscReal dxL[3], dxR[3];
36442f856554SMatthew G. Knepley 
36459566063dSJacob Faibussowitsch           PetscCall(DMPlexPointLocalRead(dmGrad, cells[0], lgrad, &gL));
36469566063dSJacob Faibussowitsch           PetscCall(DMPlexPointLocalRead(dmGrad, cells[1], lgrad, &gR));
36472f856554SMatthew G. Knepley           DMPlex_WaxpyD_Internal(dim, -1, cgL->centroid, fg->centroid, dxL);
36482f856554SMatthew G. Knepley           DMPlex_WaxpyD_Internal(dim, -1, cgR->centroid, fg->centroid, dxR);
36492f856554SMatthew G. Knepley           for (c = 0; c < numComp; ++c) {
36502f856554SMatthew G. Knepley             uLl[iface * Nc + off + c] = xL[c] + DMPlex_DotD_Internal(dim, &gL[c * dim], dxL);
36512f856554SMatthew G. Knepley             uRl[iface * Nc + off + c] = xR[c] + DMPlex_DotD_Internal(dim, &gR[c * dim], dxR);
36522f856554SMatthew G. Knepley           }
36532f856554SMatthew G. Knepley         } else {
36542f856554SMatthew G. Knepley           for (c = 0; c < numComp; ++c) {
36552f856554SMatthew G. Knepley             uLl[iface * Nc + off + c] = xL[c];
36562f856554SMatthew G. Knepley             uRl[iface * Nc + off + c] = xR[c];
36572f856554SMatthew G. Knepley           }
36582f856554SMatthew G. Knepley         }
36592f856554SMatthew G. Knepley       }
36602f856554SMatthew G. Knepley     }
36612f856554SMatthew G. Knepley     ++iface;
36622f856554SMatthew G. Knepley   }
36632f856554SMatthew G. Knepley   *Nface = iface;
36649566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(locX, &x));
36659566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(faceGeometry, &facegeom));
36669566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(cellGeometry, &cellgeom));
366748a46eb9SPierre Jolivet   if (locGrad) PetscCall(VecRestoreArrayRead(locGrad, &lgrad));
36689566063dSJacob Faibussowitsch   PetscCall(PetscFree(isFE));
36693ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
36702f856554SMatthew G. Knepley }
36712f856554SMatthew G. Knepley 
36722f856554SMatthew G. Knepley /*@C
36732f856554SMatthew G. Knepley   DMPlexRestoreFaceFields - Restore the field values values for a chunk of faces
36742f856554SMatthew G. Knepley 
36752f856554SMatthew G. Knepley   Input Parameters:
3676a1cb98faSBarry Smith + dm     - The `DM`
36772f856554SMatthew G. Knepley . fStart - The first face to include
36782f856554SMatthew G. Knepley . fEnd   - The first face to exclude
36792f856554SMatthew G. Knepley . locX   - A local vector with the solution fields
36802f856554SMatthew G. Knepley . locX_t - A local vector with solution field time derivatives, or NULL
36812f856554SMatthew G. Knepley . faceGeometry - A local vector with face geometry
36822f856554SMatthew G. Knepley . cellGeometry - A local vector with cell geometry
36832f856554SMatthew G. Knepley - locaGrad - A local vector with field gradients, or NULL
36842f856554SMatthew G. Knepley 
36852f856554SMatthew G. Knepley   Output Parameters:
36862f856554SMatthew G. Knepley + Nface - The number of faces with field values
36872f856554SMatthew G. Knepley . uL - The field values at the left side of the face
36882f856554SMatthew G. Knepley - uR - The field values at the right side of the face
36892f856554SMatthew G. Knepley 
36902f856554SMatthew G. Knepley   Level: developer
36912f856554SMatthew G. Knepley 
3692a1cb98faSBarry Smith .seealso: [](chapter_unstructured), `DM`, `DMPLEX`, `DMPlexGetFaceFields()`
36932f856554SMatthew G. Knepley @*/
3694d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexRestoreFaceFields(DM dm, PetscInt fStart, PetscInt fEnd, Vec locX, Vec locX_t, Vec faceGeometry, Vec cellGeometry, Vec locGrad, PetscInt *Nface, PetscScalar **uL, PetscScalar **uR)
3695d71ae5a4SJacob Faibussowitsch {
36962f856554SMatthew G. Knepley   PetscFunctionBegin;
36979566063dSJacob Faibussowitsch   PetscCall(DMRestoreWorkArray(dm, 0, MPIU_SCALAR, uL));
36989566063dSJacob Faibussowitsch   PetscCall(DMRestoreWorkArray(dm, 0, MPIU_SCALAR, uR));
36993ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
37002f856554SMatthew G. Knepley }
37012f856554SMatthew G. Knepley 
37022f856554SMatthew G. Knepley /*@C
37032f856554SMatthew G. Knepley   DMPlexGetFaceGeometry - Retrieve the geometric values for a chunk of faces
37042f856554SMatthew G. Knepley 
37052f856554SMatthew G. Knepley   Input Parameters:
3706a1cb98faSBarry Smith + dm     - The `DM`
37072f856554SMatthew G. Knepley . fStart - The first face to include
37082f856554SMatthew G. Knepley . fEnd   - The first face to exclude
37092f856554SMatthew G. Knepley . faceGeometry - A local vector with face geometry
37102f856554SMatthew G. Knepley - cellGeometry - A local vector with cell geometry
37112f856554SMatthew G. Knepley 
37122f856554SMatthew G. Knepley   Output Parameters:
37132f856554SMatthew G. Knepley + Nface - The number of faces with field values
37142f856554SMatthew G. Knepley . fgeom - The extract the face centroid and normal
37152f856554SMatthew G. Knepley - vol   - The cell volume
37162f856554SMatthew G. Knepley 
37172f856554SMatthew G. Knepley   Level: developer
37182f856554SMatthew G. Knepley 
3719a1cb98faSBarry Smith .seealso: [](chapter_unstructured), `DM`, `DMPLEX`, `DMPlexGetCellFields()`
37202f856554SMatthew G. Knepley @*/
3721d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexGetFaceGeometry(DM dm, PetscInt fStart, PetscInt fEnd, Vec faceGeometry, Vec cellGeometry, PetscInt *Nface, PetscFVFaceGeom **fgeom, PetscReal **vol)
3722d71ae5a4SJacob Faibussowitsch {
37232f856554SMatthew G. Knepley   DM                 dmFace, dmCell;
37242f856554SMatthew G. Knepley   DMLabel            ghostLabel;
37252f856554SMatthew G. Knepley   const PetscScalar *facegeom, *cellgeom;
37262f856554SMatthew G. Knepley   PetscInt           dim, numFaces = fEnd - fStart, iface, face;
37272f856554SMatthew G. Knepley 
37282f856554SMatthew G. Knepley   PetscFunctionBegin;
37292f856554SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
37302f856554SMatthew G. Knepley   PetscValidHeaderSpecific(faceGeometry, VEC_CLASSID, 4);
37312f856554SMatthew G. Knepley   PetscValidHeaderSpecific(cellGeometry, VEC_CLASSID, 5);
3732064a246eSJacob Faibussowitsch   PetscValidPointer(fgeom, 7);
3733064a246eSJacob Faibussowitsch   PetscValidPointer(vol, 8);
37349566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dm, &dim));
37359566063dSJacob Faibussowitsch   PetscCall(DMGetLabel(dm, "ghost", &ghostLabel));
37369566063dSJacob Faibussowitsch   PetscCall(VecGetDM(faceGeometry, &dmFace));
37379566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(faceGeometry, &facegeom));
37389566063dSJacob Faibussowitsch   PetscCall(VecGetDM(cellGeometry, &dmCell));
37399566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(cellGeometry, &cellgeom));
37409566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(numFaces, fgeom));
37419566063dSJacob Faibussowitsch   PetscCall(DMGetWorkArray(dm, numFaces * 2, MPIU_SCALAR, vol));
37422f856554SMatthew G. Knepley   for (face = fStart, iface = 0; face < fEnd; ++face) {
37432f856554SMatthew G. Knepley     const PetscInt  *cells;
37442f856554SMatthew G. Knepley     PetscFVFaceGeom *fg;
37452f856554SMatthew G. Knepley     PetscFVCellGeom *cgL, *cgR;
37462f856554SMatthew G. Knepley     PetscFVFaceGeom *fgeoml = *fgeom;
37472f856554SMatthew G. Knepley     PetscReal       *voll   = *vol;
37482f856554SMatthew G. Knepley     PetscInt         ghost, d, nchild, nsupp;
37492f856554SMatthew G. Knepley 
37509566063dSJacob Faibussowitsch     PetscCall(DMLabelGetValue(ghostLabel, face, &ghost));
37519566063dSJacob Faibussowitsch     PetscCall(DMPlexGetSupportSize(dm, face, &nsupp));
37529566063dSJacob Faibussowitsch     PetscCall(DMPlexGetTreeChildren(dm, face, &nchild, NULL));
37532f856554SMatthew G. Knepley     if (ghost >= 0 || nsupp > 2 || nchild > 0) continue;
37549566063dSJacob Faibussowitsch     PetscCall(DMPlexPointLocalRead(dmFace, face, facegeom, &fg));
37559566063dSJacob Faibussowitsch     PetscCall(DMPlexGetSupport(dm, face, &cells));
37569566063dSJacob Faibussowitsch     PetscCall(DMPlexPointLocalRead(dmCell, cells[0], cellgeom, &cgL));
37579566063dSJacob Faibussowitsch     PetscCall(DMPlexPointLocalRead(dmCell, cells[1], cellgeom, &cgR));
37582f856554SMatthew G. Knepley     for (d = 0; d < dim; ++d) {
37592f856554SMatthew G. Knepley       fgeoml[iface].centroid[d] = fg->centroid[d];
37602f856554SMatthew G. Knepley       fgeoml[iface].normal[d]   = fg->normal[d];
37612f856554SMatthew G. Knepley     }
37622f856554SMatthew G. Knepley     voll[iface * 2 + 0] = cgL->volume;
37632f856554SMatthew G. Knepley     voll[iface * 2 + 1] = cgR->volume;
37642f856554SMatthew G. Knepley     ++iface;
37652f856554SMatthew G. Knepley   }
37662f856554SMatthew G. Knepley   *Nface = iface;
37679566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(faceGeometry, &facegeom));
37689566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(cellGeometry, &cellgeom));
37693ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
37702f856554SMatthew G. Knepley }
37712f856554SMatthew G. Knepley 
37722f856554SMatthew G. Knepley /*@C
37732f856554SMatthew G. Knepley   DMPlexRestoreFaceGeometry - Restore the field values values for a chunk of faces
37742f856554SMatthew G. Knepley 
37752f856554SMatthew G. Knepley   Input Parameters:
3776a1cb98faSBarry Smith + dm     - The `DM`
37772f856554SMatthew G. Knepley . fStart - The first face to include
37782f856554SMatthew G. Knepley . fEnd   - The first face to exclude
37792f856554SMatthew G. Knepley . faceGeometry - A local vector with face geometry
37802f856554SMatthew G. Knepley - cellGeometry - A local vector with cell geometry
37812f856554SMatthew G. Knepley 
37822f856554SMatthew G. Knepley   Output Parameters:
37832f856554SMatthew G. Knepley + Nface - The number of faces with field values
37842f856554SMatthew G. Knepley . fgeom - The extract the face centroid and normal
37852f856554SMatthew G. Knepley - vol   - The cell volume
37862f856554SMatthew G. Knepley 
37872f856554SMatthew G. Knepley   Level: developer
37882f856554SMatthew G. Knepley 
3789a1cb98faSBarry Smith .seealso: [](chapter_unstructured), `DM`, `DMPLEX`, `DMPlexGetFaceFields()`
37902f856554SMatthew G. Knepley @*/
3791d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexRestoreFaceGeometry(DM dm, PetscInt fStart, PetscInt fEnd, Vec faceGeometry, Vec cellGeometry, PetscInt *Nface, PetscFVFaceGeom **fgeom, PetscReal **vol)
3792d71ae5a4SJacob Faibussowitsch {
37932f856554SMatthew G. Knepley   PetscFunctionBegin;
37949566063dSJacob Faibussowitsch   PetscCall(PetscFree(*fgeom));
37959566063dSJacob Faibussowitsch   PetscCall(DMRestoreWorkArray(dm, 0, MPIU_REAL, vol));
37963ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
37972f856554SMatthew G. Knepley }
37982f856554SMatthew G. Knepley 
3799d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSNESGetFEGeom(DMField coordField, IS pointIS, PetscQuadrature quad, PetscBool faceData, PetscFEGeom **geom)
3800d71ae5a4SJacob Faibussowitsch {
3801a1cf66bbSMatthew G. Knepley   char           composeStr[33] = {0};
3802a1cf66bbSMatthew G. Knepley   PetscObjectId  id;
3803a1cf66bbSMatthew G. Knepley   PetscContainer container;
3804a1cf66bbSMatthew G. Knepley 
3805a1cf66bbSMatthew G. Knepley   PetscFunctionBegin;
38069566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetId((PetscObject)quad, &id));
380763a3b9bcSJacob Faibussowitsch   PetscCall(PetscSNPrintf(composeStr, 32, "DMSNESGetFEGeom_%" PetscInt64_FMT "\n", id));
38089566063dSJacob Faibussowitsch   PetscCall(PetscObjectQuery((PetscObject)pointIS, composeStr, (PetscObject *)&container));
3809a1cf66bbSMatthew G. Knepley   if (container) {
38109566063dSJacob Faibussowitsch     PetscCall(PetscContainerGetPointer(container, (void **)geom));
3811a1cf66bbSMatthew G. Knepley   } else {
38129566063dSJacob Faibussowitsch     PetscCall(DMFieldCreateFEGeom(coordField, pointIS, quad, faceData, geom));
38139566063dSJacob Faibussowitsch     PetscCall(PetscContainerCreate(PETSC_COMM_SELF, &container));
38149566063dSJacob Faibussowitsch     PetscCall(PetscContainerSetPointer(container, (void *)*geom));
38159566063dSJacob Faibussowitsch     PetscCall(PetscContainerSetUserDestroy(container, PetscContainerUserDestroy_PetscFEGeom));
38169566063dSJacob Faibussowitsch     PetscCall(PetscObjectCompose((PetscObject)pointIS, composeStr, (PetscObject)container));
38179566063dSJacob Faibussowitsch     PetscCall(PetscContainerDestroy(&container));
3818a1cf66bbSMatthew G. Knepley   }
38193ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3820a1cf66bbSMatthew G. Knepley }
3821a1cf66bbSMatthew G. Knepley 
3822d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSNESRestoreFEGeom(DMField coordField, IS pointIS, PetscQuadrature quad, PetscBool faceData, PetscFEGeom **geom)
3823d71ae5a4SJacob Faibussowitsch {
3824a1cf66bbSMatthew G. Knepley   PetscFunctionBegin;
3825a1cf66bbSMatthew G. Knepley   *geom = NULL;
38263ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3827a1cf66bbSMatthew G. Knepley }
3828a1cf66bbSMatthew G. Knepley 
3829d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeResidual_Patch_Internal(DM dm, PetscSection section, IS cellIS, PetscReal t, Vec locX, Vec locX_t, Vec locF, void *user)
3830d71ae5a4SJacob Faibussowitsch {
383192d50984SMatthew G. Knepley   DM_Plex        *mesh       = (DM_Plex *)dm->data;
383292d50984SMatthew G. Knepley   const char     *name       = "Residual";
383392d50984SMatthew G. Knepley   DM              dmAux      = NULL;
383492d50984SMatthew G. Knepley   DMLabel         ghostLabel = NULL;
383592d50984SMatthew G. Knepley   PetscDS         prob       = NULL;
383692d50984SMatthew G. Knepley   PetscDS         probAux    = NULL;
383792d50984SMatthew G. Knepley   PetscBool       useFEM     = PETSC_FALSE;
383892d50984SMatthew G. Knepley   PetscBool       isImplicit = (locX_t || t == PETSC_MIN_REAL) ? PETSC_TRUE : PETSC_FALSE;
383992d50984SMatthew G. Knepley   DMField         coordField = NULL;
3840c0006e53SPatrick Farrell   Vec             locA;
3841c0006e53SPatrick Farrell   PetscScalar    *u = NULL, *u_t, *a, *uL = NULL, *uR = NULL;
384292d50984SMatthew G. Knepley   IS              chunkIS;
384392d50984SMatthew G. Knepley   const PetscInt *cells;
384492d50984SMatthew G. Knepley   PetscInt        cStart, cEnd, numCells;
3845364207b6SKarl Rupp   PetscInt        Nf, f, totDim, totDimAux, numChunks, cellChunkSize, chunk, fStart, fEnd;
384692d50984SMatthew G. Knepley   PetscInt        maxDegree = PETSC_MAX_INT;
384706ad1575SMatthew G. Knepley   PetscFormKey    key;
384892d50984SMatthew G. Knepley   PetscQuadrature affineQuad = NULL, *quads = NULL;
384992d50984SMatthew G. Knepley   PetscFEGeom    *affineGeom = NULL, **geoms = NULL;
385092d50984SMatthew G. Knepley 
385192d50984SMatthew G. Knepley   PetscFunctionBegin;
38529566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(DMPLEX_ResidualFEM, dm, 0, 0, 0));
385392d50984SMatthew G. Knepley   /* FEM+FVM */
385492d50984SMatthew G. Knepley   /* 1: Get sizes from dm and dmAux */
38559566063dSJacob Faibussowitsch   PetscCall(DMGetLabel(dm, "ghost", &ghostLabel));
38569566063dSJacob Faibussowitsch   PetscCall(DMGetDS(dm, &prob));
38579566063dSJacob Faibussowitsch   PetscCall(PetscDSGetNumFields(prob, &Nf));
38589566063dSJacob Faibussowitsch   PetscCall(PetscDSGetTotalDimension(prob, &totDim));
38599566063dSJacob Faibussowitsch   PetscCall(DMGetAuxiliaryVec(dm, NULL, 0, 0, &locA));
386092d50984SMatthew G. Knepley   if (locA) {
38619566063dSJacob Faibussowitsch     PetscCall(VecGetDM(locA, &dmAux));
38629566063dSJacob Faibussowitsch     PetscCall(DMGetDS(dmAux, &probAux));
38639566063dSJacob Faibussowitsch     PetscCall(PetscDSGetTotalDimension(probAux, &totDimAux));
386492d50984SMatthew G. Knepley   }
386592d50984SMatthew G. Knepley   /* 2: Get geometric data */
386692d50984SMatthew G. Knepley   for (f = 0; f < Nf; ++f) {
386792d50984SMatthew G. Knepley     PetscObject  obj;
386892d50984SMatthew G. Knepley     PetscClassId id;
386992d50984SMatthew G. Knepley     PetscBool    fimp;
387092d50984SMatthew G. Knepley 
38719566063dSJacob Faibussowitsch     PetscCall(PetscDSGetImplicit(prob, f, &fimp));
387292d50984SMatthew G. Knepley     if (isImplicit != fimp) continue;
38739566063dSJacob Faibussowitsch     PetscCall(PetscDSGetDiscretization(prob, f, &obj));
38749566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetClassId(obj, &id));
3875ad540459SPierre Jolivet     if (id == PETSCFE_CLASSID) useFEM = PETSC_TRUE;
38765f80ce2aSJacob Faibussowitsch     PetscCheck(id != PETSCFV_CLASSID, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Use of FVM with PCPATCH not yet implemented");
387792d50984SMatthew G. Knepley   }
387892d50984SMatthew G. Knepley   if (useFEM) {
38799566063dSJacob Faibussowitsch     PetscCall(DMGetCoordinateField(dm, &coordField));
38809566063dSJacob Faibussowitsch     PetscCall(DMFieldGetDegree(coordField, cellIS, NULL, &maxDegree));
388192d50984SMatthew G. Knepley     if (maxDegree <= 1) {
38829566063dSJacob Faibussowitsch       PetscCall(DMFieldCreateDefaultQuadrature(coordField, cellIS, &affineQuad));
388348a46eb9SPierre Jolivet       if (affineQuad) PetscCall(DMSNESGetFEGeom(coordField, cellIS, affineQuad, PETSC_FALSE, &affineGeom));
388492d50984SMatthew G. Knepley     } else {
38859566063dSJacob Faibussowitsch       PetscCall(PetscCalloc2(Nf, &quads, Nf, &geoms));
388692d50984SMatthew G. Knepley       for (f = 0; f < Nf; ++f) {
388792d50984SMatthew G. Knepley         PetscObject  obj;
388892d50984SMatthew G. Knepley         PetscClassId id;
388992d50984SMatthew G. Knepley         PetscBool    fimp;
389092d50984SMatthew G. Knepley 
38919566063dSJacob Faibussowitsch         PetscCall(PetscDSGetImplicit(prob, f, &fimp));
389292d50984SMatthew G. Knepley         if (isImplicit != fimp) continue;
38939566063dSJacob Faibussowitsch         PetscCall(PetscDSGetDiscretization(prob, f, &obj));
38949566063dSJacob Faibussowitsch         PetscCall(PetscObjectGetClassId(obj, &id));
389592d50984SMatthew G. Knepley         if (id == PETSCFE_CLASSID) {
389692d50984SMatthew G. Knepley           PetscFE fe = (PetscFE)obj;
389792d50984SMatthew G. Knepley 
38989566063dSJacob Faibussowitsch           PetscCall(PetscFEGetQuadrature(fe, &quads[f]));
38999566063dSJacob Faibussowitsch           PetscCall(PetscObjectReference((PetscObject)quads[f]));
39009566063dSJacob Faibussowitsch           PetscCall(DMSNESGetFEGeom(coordField, cellIS, quads[f], PETSC_FALSE, &geoms[f]));
390192d50984SMatthew G. Knepley         }
390292d50984SMatthew G. Knepley       }
390392d50984SMatthew G. Knepley     }
390492d50984SMatthew G. Knepley   }
390592d50984SMatthew G. Knepley   /* Loop over chunks */
39069566063dSJacob Faibussowitsch   PetscCall(ISGetPointRange(cellIS, &cStart, &cEnd, &cells));
39079566063dSJacob Faibussowitsch   PetscCall(DMPlexGetHeightStratum(dm, 1, &fStart, &fEnd));
39089566063dSJacob Faibussowitsch   if (useFEM) PetscCall(ISCreate(PETSC_COMM_SELF, &chunkIS));
390992d50984SMatthew G. Knepley   numCells      = cEnd - cStart;
391092d50984SMatthew G. Knepley   numChunks     = 1;
391192d50984SMatthew G. Knepley   cellChunkSize = numCells / numChunks;
391292d50984SMatthew G. Knepley   numChunks     = PetscMin(1, numCells);
39136528b96dSMatthew G. Knepley   key.label     = NULL;
39146528b96dSMatthew G. Knepley   key.value     = 0;
391506ad1575SMatthew G. Knepley   key.part      = 0;
391692d50984SMatthew G. Knepley   for (chunk = 0; chunk < numChunks; ++chunk) {
3917c0006e53SPatrick Farrell     PetscScalar     *elemVec, *fluxL = NULL, *fluxR = NULL;
3918c0006e53SPatrick Farrell     PetscReal       *vol   = NULL;
3919c0006e53SPatrick Farrell     PetscFVFaceGeom *fgeom = NULL;
392092d50984SMatthew G. Knepley     PetscInt         cS = cStart + chunk * cellChunkSize, cE = PetscMin(cS + cellChunkSize, cEnd), numCells = cE - cS, c;
3921c0006e53SPatrick Farrell     PetscInt         numFaces = 0;
392292d50984SMatthew G. Knepley 
392392d50984SMatthew G. Knepley     /* Extract field coefficients */
392492d50984SMatthew G. Knepley     if (useFEM) {
39259566063dSJacob Faibussowitsch       PetscCall(ISGetPointSubrange(chunkIS, cS, cE, cells));
39269566063dSJacob Faibussowitsch       PetscCall(DMPlexGetCellFields(dm, chunkIS, locX, locX_t, locA, &u, &u_t, &a));
39279566063dSJacob Faibussowitsch       PetscCall(DMGetWorkArray(dm, numCells * totDim, MPIU_SCALAR, &elemVec));
39289566063dSJacob Faibussowitsch       PetscCall(PetscArrayzero(elemVec, numCells * totDim));
392992d50984SMatthew G. Knepley     }
393092d50984SMatthew G. Knepley     /* TODO We will interlace both our field coefficients (u, u_t, uL, uR, etc.) and our output (elemVec, fL, fR). I think this works */
393192d50984SMatthew G. Knepley     /* Loop over fields */
393292d50984SMatthew G. Knepley     for (f = 0; f < Nf; ++f) {
393392d50984SMatthew G. Knepley       PetscObject  obj;
393492d50984SMatthew G. Knepley       PetscClassId id;
393592d50984SMatthew G. Knepley       PetscBool    fimp;
393692d50984SMatthew G. Knepley       PetscInt     numChunks, numBatches, batchSize, numBlocks, blockSize, Ne, Nr, offset;
393792d50984SMatthew G. Knepley 
39386528b96dSMatthew G. Knepley       key.field = f;
39399566063dSJacob Faibussowitsch       PetscCall(PetscDSGetImplicit(prob, f, &fimp));
394092d50984SMatthew G. Knepley       if (isImplicit != fimp) continue;
39419566063dSJacob Faibussowitsch       PetscCall(PetscDSGetDiscretization(prob, f, &obj));
39429566063dSJacob Faibussowitsch       PetscCall(PetscObjectGetClassId(obj, &id));
394392d50984SMatthew G. Knepley       if (id == PETSCFE_CLASSID) {
394492d50984SMatthew G. Knepley         PetscFE         fe        = (PetscFE)obj;
394592d50984SMatthew G. Knepley         PetscFEGeom    *geom      = affineGeom ? affineGeom : geoms[f];
394692d50984SMatthew G. Knepley         PetscFEGeom    *chunkGeom = NULL;
394792d50984SMatthew G. Knepley         PetscQuadrature quad      = affineQuad ? affineQuad : quads[f];
394892d50984SMatthew G. Knepley         PetscInt        Nq, Nb;
394992d50984SMatthew G. Knepley 
39509566063dSJacob Faibussowitsch         PetscCall(PetscFEGetTileSizes(fe, NULL, &numBlocks, NULL, &numBatches));
39519566063dSJacob Faibussowitsch         PetscCall(PetscQuadratureGetData(quad, NULL, NULL, &Nq, NULL, NULL));
39529566063dSJacob Faibussowitsch         PetscCall(PetscFEGetDimension(fe, &Nb));
395392d50984SMatthew G. Knepley         blockSize = Nb;
395492d50984SMatthew G. Knepley         batchSize = numBlocks * blockSize;
39559566063dSJacob Faibussowitsch         PetscCall(PetscFESetTileSizes(fe, blockSize, numBlocks, batchSize, numBatches));
395692d50984SMatthew G. Knepley         numChunks = numCells / (numBatches * batchSize);
395792d50984SMatthew G. Knepley         Ne        = numChunks * numBatches * batchSize;
395892d50984SMatthew G. Knepley         Nr        = numCells % (numBatches * batchSize);
395992d50984SMatthew G. Knepley         offset    = numCells - Nr;
396092d50984SMatthew G. Knepley         /* Integrate FE residual to get elemVec (need fields at quadrature points) */
396192d50984SMatthew G. Knepley         /*   For FV, I think we use a P0 basis and the cell coefficients (for subdivided cells, we can tweak the basis tabulation to be the indicator function) */
39629566063dSJacob Faibussowitsch         PetscCall(PetscFEGeomGetChunk(geom, 0, offset, &chunkGeom));
39639566063dSJacob Faibussowitsch         PetscCall(PetscFEIntegrateResidual(prob, key, Ne, chunkGeom, u, u_t, probAux, a, t, elemVec));
39649566063dSJacob Faibussowitsch         PetscCall(PetscFEGeomGetChunk(geom, offset, numCells, &chunkGeom));
39659566063dSJacob Faibussowitsch         PetscCall(PetscFEIntegrateResidual(prob, key, Nr, chunkGeom, &u[offset * totDim], u_t ? &u_t[offset * totDim] : NULL, probAux, &a[offset * totDimAux], t, &elemVec[offset * totDim]));
39669566063dSJacob Faibussowitsch         PetscCall(PetscFEGeomRestoreChunk(geom, offset, numCells, &chunkGeom));
396792d50984SMatthew G. Knepley       } else if (id == PETSCFV_CLASSID) {
396892d50984SMatthew G. Knepley         PetscFV fv = (PetscFV)obj;
396992d50984SMatthew G. Knepley 
397092d50984SMatthew G. Knepley         Ne = numFaces;
397192d50984SMatthew G. Knepley         /* Riemann solve over faces (need fields at face centroids) */
397292d50984SMatthew G. Knepley         /*   We need to evaluate FE fields at those coordinates */
39739566063dSJacob Faibussowitsch         PetscCall(PetscFVIntegrateRHSFunction(fv, prob, f, Ne, fgeom, vol, uL, uR, fluxL, fluxR));
397463a3b9bcSJacob Faibussowitsch       } else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, f);
397592d50984SMatthew G. Knepley     }
397692d50984SMatthew G. Knepley     /* Loop over domain */
397792d50984SMatthew G. Knepley     if (useFEM) {
397892d50984SMatthew G. Knepley       /* Add elemVec to locX */
397992d50984SMatthew G. Knepley       for (c = cS; c < cE; ++c) {
398092d50984SMatthew G. Knepley         const PetscInt cell = cells ? cells[c] : c;
398192d50984SMatthew G. Knepley         const PetscInt cind = c - cStart;
398292d50984SMatthew G. Knepley 
39839566063dSJacob Faibussowitsch         if (mesh->printFEM > 1) PetscCall(DMPrintCellVector(cell, name, totDim, &elemVec[cind * totDim]));
398492d50984SMatthew G. Knepley         if (ghostLabel) {
398592d50984SMatthew G. Knepley           PetscInt ghostVal;
398692d50984SMatthew G. Knepley 
39879566063dSJacob Faibussowitsch           PetscCall(DMLabelGetValue(ghostLabel, cell, &ghostVal));
398892d50984SMatthew G. Knepley           if (ghostVal > 0) continue;
398992d50984SMatthew G. Knepley         }
39909566063dSJacob Faibussowitsch         PetscCall(DMPlexVecSetClosure(dm, section, locF, cell, &elemVec[cind * totDim], ADD_ALL_VALUES));
399192d50984SMatthew G. Knepley       }
399292d50984SMatthew G. Knepley     }
399392d50984SMatthew G. Knepley     /* Handle time derivative */
399492d50984SMatthew G. Knepley     if (locX_t) {
399592d50984SMatthew G. Knepley       PetscScalar *x_t, *fa;
399692d50984SMatthew G. Knepley 
39979566063dSJacob Faibussowitsch       PetscCall(VecGetArray(locF, &fa));
39989566063dSJacob Faibussowitsch       PetscCall(VecGetArray(locX_t, &x_t));
399992d50984SMatthew G. Knepley       for (f = 0; f < Nf; ++f) {
400092d50984SMatthew G. Knepley         PetscFV      fv;
400192d50984SMatthew G. Knepley         PetscObject  obj;
400292d50984SMatthew G. Knepley         PetscClassId id;
400392d50984SMatthew G. Knepley         PetscInt     pdim, d;
400492d50984SMatthew G. Knepley 
40059566063dSJacob Faibussowitsch         PetscCall(PetscDSGetDiscretization(prob, f, &obj));
40069566063dSJacob Faibussowitsch         PetscCall(PetscObjectGetClassId(obj, &id));
400792d50984SMatthew G. Knepley         if (id != PETSCFV_CLASSID) continue;
400892d50984SMatthew G. Knepley         fv = (PetscFV)obj;
40099566063dSJacob Faibussowitsch         PetscCall(PetscFVGetNumComponents(fv, &pdim));
401092d50984SMatthew G. Knepley         for (c = cS; c < cE; ++c) {
401192d50984SMatthew G. Knepley           const PetscInt cell = cells ? cells[c] : c;
401292d50984SMatthew G. Knepley           PetscScalar   *u_t, *r;
401392d50984SMatthew G. Knepley 
401492d50984SMatthew G. Knepley           if (ghostLabel) {
401592d50984SMatthew G. Knepley             PetscInt ghostVal;
401692d50984SMatthew G. Knepley 
40179566063dSJacob Faibussowitsch             PetscCall(DMLabelGetValue(ghostLabel, cell, &ghostVal));
401892d50984SMatthew G. Knepley             if (ghostVal > 0) continue;
401992d50984SMatthew G. Knepley           }
40209566063dSJacob Faibussowitsch           PetscCall(DMPlexPointLocalFieldRead(dm, cell, f, x_t, &u_t));
40219566063dSJacob Faibussowitsch           PetscCall(DMPlexPointLocalFieldRef(dm, cell, f, fa, &r));
402292d50984SMatthew G. Knepley           for (d = 0; d < pdim; ++d) r[d] += u_t[d];
402392d50984SMatthew G. Knepley         }
402492d50984SMatthew G. Knepley       }
40259566063dSJacob Faibussowitsch       PetscCall(VecRestoreArray(locX_t, &x_t));
40269566063dSJacob Faibussowitsch       PetscCall(VecRestoreArray(locF, &fa));
402792d50984SMatthew G. Knepley     }
402892d50984SMatthew G. Knepley     if (useFEM) {
40299566063dSJacob Faibussowitsch       PetscCall(DMPlexRestoreCellFields(dm, chunkIS, locX, locX_t, locA, &u, &u_t, &a));
40309566063dSJacob Faibussowitsch       PetscCall(DMRestoreWorkArray(dm, numCells * totDim, MPIU_SCALAR, &elemVec));
403192d50984SMatthew G. Knepley     }
403292d50984SMatthew G. Knepley   }
40339566063dSJacob Faibussowitsch   if (useFEM) PetscCall(ISDestroy(&chunkIS));
40349566063dSJacob Faibussowitsch   PetscCall(ISRestorePointRange(cellIS, &cStart, &cEnd, &cells));
403592d50984SMatthew G. Knepley   /* TODO Could include boundary residual here (see DMPlexComputeResidual_Internal) */
403692d50984SMatthew G. Knepley   if (useFEM) {
403792d50984SMatthew G. Knepley     if (maxDegree <= 1) {
40389566063dSJacob Faibussowitsch       PetscCall(DMSNESRestoreFEGeom(coordField, cellIS, affineQuad, PETSC_FALSE, &affineGeom));
40399566063dSJacob Faibussowitsch       PetscCall(PetscQuadratureDestroy(&affineQuad));
404092d50984SMatthew G. Knepley     } else {
404192d50984SMatthew G. Knepley       for (f = 0; f < Nf; ++f) {
40429566063dSJacob Faibussowitsch         PetscCall(DMSNESRestoreFEGeom(coordField, cellIS, quads[f], PETSC_FALSE, &geoms[f]));
40439566063dSJacob Faibussowitsch         PetscCall(PetscQuadratureDestroy(&quads[f]));
404492d50984SMatthew G. Knepley       }
40459566063dSJacob Faibussowitsch       PetscCall(PetscFree2(quads, geoms));
404692d50984SMatthew G. Knepley     }
404792d50984SMatthew G. Knepley   }
40489566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(DMPLEX_ResidualFEM, dm, 0, 0, 0));
40493ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
405092d50984SMatthew G. Knepley }
405192d50984SMatthew G. Knepley 
4052a1cf66bbSMatthew G. Knepley /*
4053a1cf66bbSMatthew G. Knepley   We always assemble JacP, and if the matrix is different from Jac and two different sets of point functions are provided, we also assemble Jac
4054a1cf66bbSMatthew G. Knepley 
4055a1cf66bbSMatthew G. Knepley   X   - The local solution vector
4056a5b23f4aSJose E. Roman   X_t - The local solution time derivative vector, or NULL
4057a1cf66bbSMatthew G. Knepley */
4058d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeJacobian_Patch_Internal(DM dm, PetscSection section, PetscSection globalSection, IS cellIS, PetscReal t, PetscReal X_tShift, Vec X, Vec X_t, Mat Jac, Mat JacP, void *ctx)
4059d71ae5a4SJacob Faibussowitsch {
4060a1cf66bbSMatthew G. Knepley   DM_Plex        *mesh = (DM_Plex *)dm->data;
4061a1cf66bbSMatthew G. Knepley   const char     *name = "Jacobian", *nameP = "JacobianPre";
4062a1cf66bbSMatthew G. Knepley   DM              dmAux = NULL;
4063a1cf66bbSMatthew G. Knepley   PetscDS         prob, probAux = NULL;
4064a1cf66bbSMatthew G. Knepley   PetscSection    sectionAux = NULL;
4065a1cf66bbSMatthew G. Knepley   Vec             A;
4066a1cf66bbSMatthew G. Knepley   DMField         coordField;
4067a1cf66bbSMatthew G. Knepley   PetscFEGeom    *cgeomFEM;
4068a1cf66bbSMatthew G. Knepley   PetscQuadrature qGeom = NULL;
4069a1cf66bbSMatthew G. Knepley   Mat             J = Jac, JP = JacP;
4070a1cf66bbSMatthew G. Knepley   PetscScalar    *work, *u = NULL, *u_t = NULL, *a = NULL, *elemMat = NULL, *elemMatP = NULL, *elemMatD = NULL;
4071e432b41dSStefano Zampini   PetscBool       hasJac, hasPrec, hasDyn, assembleJac, *isFE, hasFV = PETSC_FALSE;
4072a1cf66bbSMatthew G. Knepley   const PetscInt *cells;
407306ad1575SMatthew G. Knepley   PetscFormKey    key;
40749b2fc754SMatthew G. Knepley   PetscInt        Nf, fieldI, fieldJ, maxDegree, numCells, cStart, cEnd, numChunks, chunkSize, chunk, totDim, totDimAux = 0, sz, wsz, off = 0, offCell = 0;
4075a1cf66bbSMatthew G. Knepley 
4076a1cf66bbSMatthew G. Knepley   PetscFunctionBegin;
40779566063dSJacob Faibussowitsch   PetscCall(ISGetLocalSize(cellIS, &numCells));
40789566063dSJacob Faibussowitsch   PetscCall(ISGetPointRange(cellIS, &cStart, &cEnd, &cells));
40799566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(DMPLEX_JacobianFEM, dm, 0, 0, 0));
40809566063dSJacob Faibussowitsch   PetscCall(DMGetDS(dm, &prob));
40819566063dSJacob Faibussowitsch   PetscCall(DMGetAuxiliaryVec(dm, NULL, 0, 0, &A));
40829a2a23afSMatthew G. Knepley   if (A) {
40839566063dSJacob Faibussowitsch     PetscCall(VecGetDM(A, &dmAux));
40849566063dSJacob Faibussowitsch     PetscCall(DMGetLocalSection(dmAux, &sectionAux));
40859566063dSJacob Faibussowitsch     PetscCall(DMGetDS(dmAux, &probAux));
4086a1cf66bbSMatthew G. Knepley   }
4087a1cf66bbSMatthew G. Knepley   /* Get flags */
40889566063dSJacob Faibussowitsch   PetscCall(PetscDSGetNumFields(prob, &Nf));
40899566063dSJacob Faibussowitsch   PetscCall(DMGetWorkArray(dm, Nf, MPIU_BOOL, &isFE));
4090a1cf66bbSMatthew G. Knepley   for (fieldI = 0; fieldI < Nf; ++fieldI) {
4091a1cf66bbSMatthew G. Knepley     PetscObject  disc;
4092a1cf66bbSMatthew G. Knepley     PetscClassId id;
40939566063dSJacob Faibussowitsch     PetscCall(PetscDSGetDiscretization(prob, fieldI, &disc));
40949566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetClassId(disc, &id));
40959371c9d4SSatish Balay     if (id == PETSCFE_CLASSID) {
40969371c9d4SSatish Balay       isFE[fieldI] = PETSC_TRUE;
40979371c9d4SSatish Balay     } else if (id == PETSCFV_CLASSID) {
40989371c9d4SSatish Balay       hasFV        = PETSC_TRUE;
40999371c9d4SSatish Balay       isFE[fieldI] = PETSC_FALSE;
41009371c9d4SSatish Balay     }
4101a1cf66bbSMatthew G. Knepley   }
41029566063dSJacob Faibussowitsch   PetscCall(PetscDSHasJacobian(prob, &hasJac));
41039566063dSJacob Faibussowitsch   PetscCall(PetscDSHasJacobianPreconditioner(prob, &hasPrec));
41049566063dSJacob Faibussowitsch   PetscCall(PetscDSHasDynamicJacobian(prob, &hasDyn));
4105a1cf66bbSMatthew G. Knepley   assembleJac = hasJac && hasPrec && (Jac != JacP) ? PETSC_TRUE : PETSC_FALSE;
4106a1cf66bbSMatthew G. Knepley   hasDyn      = hasDyn && (X_tShift != 0.0) ? PETSC_TRUE : PETSC_FALSE;
41079566063dSJacob Faibussowitsch   if (hasFV) PetscCall(MatSetOption(JP, MAT_IGNORE_ZERO_ENTRIES, PETSC_TRUE)); /* No allocated space for FV stuff, so ignore the zero entries */
41089566063dSJacob Faibussowitsch   PetscCall(PetscDSGetTotalDimension(prob, &totDim));
41099566063dSJacob Faibussowitsch   if (probAux) PetscCall(PetscDSGetTotalDimension(probAux, &totDimAux));
4110a1cf66bbSMatthew G. Knepley   /* Compute batch sizes */
4111a1cf66bbSMatthew G. Knepley   if (isFE[0]) {
4112a1cf66bbSMatthew G. Knepley     PetscFE         fe;
4113a1cf66bbSMatthew G. Knepley     PetscQuadrature q;
4114a1cf66bbSMatthew G. Knepley     PetscInt        numQuadPoints, numBatches, batchSize, numBlocks, blockSize, Nb;
4115a1cf66bbSMatthew G. Knepley 
41169566063dSJacob Faibussowitsch     PetscCall(PetscDSGetDiscretization(prob, 0, (PetscObject *)&fe));
41179566063dSJacob Faibussowitsch     PetscCall(PetscFEGetQuadrature(fe, &q));
41189566063dSJacob Faibussowitsch     PetscCall(PetscQuadratureGetData(q, NULL, NULL, &numQuadPoints, NULL, NULL));
41199566063dSJacob Faibussowitsch     PetscCall(PetscFEGetDimension(fe, &Nb));
41209566063dSJacob Faibussowitsch     PetscCall(PetscFEGetTileSizes(fe, NULL, &numBlocks, NULL, &numBatches));
4121a1cf66bbSMatthew G. Knepley     blockSize = Nb * numQuadPoints;
4122a1cf66bbSMatthew G. Knepley     batchSize = numBlocks * blockSize;
4123a1cf66bbSMatthew G. Knepley     chunkSize = numBatches * batchSize;
4124a1cf66bbSMatthew G. Knepley     numChunks = numCells / chunkSize + numCells % chunkSize;
41259566063dSJacob Faibussowitsch     PetscCall(PetscFESetTileSizes(fe, blockSize, numBlocks, batchSize, numBatches));
4126a1cf66bbSMatthew G. Knepley   } else {
4127a1cf66bbSMatthew G. Knepley     chunkSize = numCells;
4128a1cf66bbSMatthew G. Knepley     numChunks = 1;
4129a1cf66bbSMatthew G. Knepley   }
4130a1cf66bbSMatthew G. Knepley   /* Get work space */
4131a1cf66bbSMatthew G. Knepley   wsz = (((X ? 1 : 0) + (X_t ? 1 : 0) + (dmAux ? 1 : 0)) * totDim + ((hasJac ? 1 : 0) + (hasPrec ? 1 : 0) + (hasDyn ? 1 : 0)) * totDim * totDim) * chunkSize;
41329566063dSJacob Faibussowitsch   PetscCall(DMGetWorkArray(dm, wsz, MPIU_SCALAR, &work));
41339566063dSJacob Faibussowitsch   PetscCall(PetscArrayzero(work, wsz));
4134a1cf66bbSMatthew G. Knepley   off      = 0;
4135a1cf66bbSMatthew G. Knepley   u        = X ? (sz = chunkSize * totDim, off += sz, work + off - sz) : NULL;
4136a1cf66bbSMatthew G. Knepley   u_t      = X_t ? (sz = chunkSize * totDim, off += sz, work + off - sz) : NULL;
4137a1cf66bbSMatthew G. Knepley   a        = dmAux ? (sz = chunkSize * totDimAux, off += sz, work + off - sz) : NULL;
4138a1cf66bbSMatthew G. Knepley   elemMat  = hasJac ? (sz = chunkSize * totDim * totDim, off += sz, work + off - sz) : NULL;
4139a1cf66bbSMatthew G. Knepley   elemMatP = hasPrec ? (sz = chunkSize * totDim * totDim, off += sz, work + off - sz) : NULL;
4140a1cf66bbSMatthew G. Knepley   elemMatD = hasDyn ? (sz = chunkSize * totDim * totDim, off += sz, work + off - sz) : NULL;
414163a3b9bcSJacob Faibussowitsch   PetscCheck(off == wsz, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Error is workspace size %" PetscInt_FMT " should be %" PetscInt_FMT, off, wsz);
4142a1cf66bbSMatthew G. Knepley   /* Setup geometry */
41439566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateField(dm, &coordField));
41449566063dSJacob Faibussowitsch   PetscCall(DMFieldGetDegree(coordField, cellIS, NULL, &maxDegree));
41459566063dSJacob Faibussowitsch   if (maxDegree <= 1) PetscCall(DMFieldCreateDefaultQuadrature(coordField, cellIS, &qGeom));
4146a1cf66bbSMatthew G. Knepley   if (!qGeom) {
4147a1cf66bbSMatthew G. Knepley     PetscFE fe;
4148a1cf66bbSMatthew G. Knepley 
41499566063dSJacob Faibussowitsch     PetscCall(PetscDSGetDiscretization(prob, 0, (PetscObject *)&fe));
41509566063dSJacob Faibussowitsch     PetscCall(PetscFEGetQuadrature(fe, &qGeom));
41519566063dSJacob Faibussowitsch     PetscCall(PetscObjectReference((PetscObject)qGeom));
4152a1cf66bbSMatthew G. Knepley   }
41539566063dSJacob Faibussowitsch   PetscCall(DMSNESGetFEGeom(coordField, cellIS, qGeom, PETSC_FALSE, &cgeomFEM));
4154a1cf66bbSMatthew G. Knepley   /* Compute volume integrals */
41559566063dSJacob Faibussowitsch   if (assembleJac) PetscCall(MatZeroEntries(J));
41569566063dSJacob Faibussowitsch   PetscCall(MatZeroEntries(JP));
41576528b96dSMatthew G. Knepley   key.label = NULL;
41586528b96dSMatthew G. Knepley   key.value = 0;
415906ad1575SMatthew G. Knepley   key.part  = 0;
4160a1cf66bbSMatthew G. Knepley   for (chunk = 0; chunk < numChunks; ++chunk, offCell += chunkSize) {
4161a1cf66bbSMatthew G. Knepley     const PetscInt Ncell = PetscMin(chunkSize, numCells - offCell);
4162a1cf66bbSMatthew G. Knepley     PetscInt       c;
4163a1cf66bbSMatthew G. Knepley 
4164a1cf66bbSMatthew G. Knepley     /* Extract values */
4165a1cf66bbSMatthew G. Knepley     for (c = 0; c < Ncell; ++c) {
4166a1cf66bbSMatthew G. Knepley       const PetscInt cell = cells ? cells[c + offCell] : c + offCell;
4167a1cf66bbSMatthew G. Knepley       PetscScalar   *x = NULL, *x_t = NULL;
4168a1cf66bbSMatthew G. Knepley       PetscInt       i;
4169a1cf66bbSMatthew G. Knepley 
4170a1cf66bbSMatthew G. Knepley       if (X) {
41719566063dSJacob Faibussowitsch         PetscCall(DMPlexVecGetClosure(dm, section, X, cell, NULL, &x));
4172a1cf66bbSMatthew G. Knepley         for (i = 0; i < totDim; ++i) u[c * totDim + i] = x[i];
41739566063dSJacob Faibussowitsch         PetscCall(DMPlexVecRestoreClosure(dm, section, X, cell, NULL, &x));
4174a1cf66bbSMatthew G. Knepley       }
4175a1cf66bbSMatthew G. Knepley       if (X_t) {
41769566063dSJacob Faibussowitsch         PetscCall(DMPlexVecGetClosure(dm, section, X_t, cell, NULL, &x_t));
4177a1cf66bbSMatthew G. Knepley         for (i = 0; i < totDim; ++i) u_t[c * totDim + i] = x_t[i];
41789566063dSJacob Faibussowitsch         PetscCall(DMPlexVecRestoreClosure(dm, section, X_t, cell, NULL, &x_t));
4179a1cf66bbSMatthew G. Knepley       }
4180a1cf66bbSMatthew G. Knepley       if (dmAux) {
41819566063dSJacob Faibussowitsch         PetscCall(DMPlexVecGetClosure(dmAux, sectionAux, A, cell, NULL, &x));
4182a1cf66bbSMatthew G. Knepley         for (i = 0; i < totDimAux; ++i) a[c * totDimAux + i] = x[i];
41839566063dSJacob Faibussowitsch         PetscCall(DMPlexVecRestoreClosure(dmAux, sectionAux, A, cell, NULL, &x));
4184a1cf66bbSMatthew G. Knepley       }
4185a1cf66bbSMatthew G. Knepley     }
4186a1cf66bbSMatthew G. Knepley     for (fieldI = 0; fieldI < Nf; ++fieldI) {
4187a1cf66bbSMatthew G. Knepley       PetscFE fe;
41889566063dSJacob Faibussowitsch       PetscCall(PetscDSGetDiscretization(prob, fieldI, (PetscObject *)&fe));
4189a1cf66bbSMatthew G. Knepley       for (fieldJ = 0; fieldJ < Nf; ++fieldJ) {
41906528b96dSMatthew G. Knepley         key.field = fieldI * Nf + fieldJ;
41919566063dSJacob Faibussowitsch         if (hasJac) PetscCall(PetscFEIntegrateJacobian(prob, PETSCFE_JACOBIAN, key, Ncell, cgeomFEM, u, u_t, probAux, a, t, X_tShift, elemMat));
41929566063dSJacob Faibussowitsch         if (hasPrec) PetscCall(PetscFEIntegrateJacobian(prob, PETSCFE_JACOBIAN_PRE, key, Ncell, cgeomFEM, u, u_t, probAux, a, t, X_tShift, elemMatP));
41939566063dSJacob Faibussowitsch         if (hasDyn) PetscCall(PetscFEIntegrateJacobian(prob, PETSCFE_JACOBIAN_DYN, key, Ncell, cgeomFEM, u, u_t, probAux, a, t, X_tShift, elemMatD));
4194a1cf66bbSMatthew G. Knepley       }
4195a1cf66bbSMatthew G. Knepley       /* For finite volume, add the identity */
4196a1cf66bbSMatthew G. Knepley       if (!isFE[fieldI]) {
4197a1cf66bbSMatthew G. Knepley         PetscFV  fv;
4198a1cf66bbSMatthew G. Knepley         PetscInt eOffset = 0, Nc, fc, foff;
4199a1cf66bbSMatthew G. Knepley 
42009566063dSJacob Faibussowitsch         PetscCall(PetscDSGetFieldOffset(prob, fieldI, &foff));
42019566063dSJacob Faibussowitsch         PetscCall(PetscDSGetDiscretization(prob, fieldI, (PetscObject *)&fv));
42029566063dSJacob Faibussowitsch         PetscCall(PetscFVGetNumComponents(fv, &Nc));
4203a1cf66bbSMatthew G. Knepley         for (c = 0; c < chunkSize; ++c, eOffset += totDim * totDim) {
4204a1cf66bbSMatthew G. Knepley           for (fc = 0; fc < Nc; ++fc) {
4205a1cf66bbSMatthew G. Knepley             const PetscInt i = foff + fc;
4206ad540459SPierre Jolivet             if (hasJac) elemMat[eOffset + i * totDim + i] = 1.0;
4207ad540459SPierre Jolivet             if (hasPrec) elemMatP[eOffset + i * totDim + i] = 1.0;
4208a1cf66bbSMatthew G. Knepley           }
4209a1cf66bbSMatthew G. Knepley         }
4210a1cf66bbSMatthew G. Knepley       }
4211a1cf66bbSMatthew G. Knepley     }
4212a1cf66bbSMatthew G. Knepley     /*   Add contribution from X_t */
42139371c9d4SSatish Balay     if (hasDyn) {
42149371c9d4SSatish Balay       for (c = 0; c < chunkSize * totDim * totDim; ++c) elemMat[c] += X_tShift * elemMatD[c];
42159371c9d4SSatish Balay     }
4216a1cf66bbSMatthew G. Knepley     /* Insert values into matrix */
4217a1cf66bbSMatthew G. Knepley     for (c = 0; c < Ncell; ++c) {
4218a1cf66bbSMatthew G. Knepley       const PetscInt cell = cells ? cells[c + offCell] : c + offCell;
4219a1cf66bbSMatthew G. Knepley       if (mesh->printFEM > 1) {
42209566063dSJacob Faibussowitsch         if (hasJac) PetscCall(DMPrintCellMatrix(cell, name, totDim, totDim, &elemMat[(c - cStart) * totDim * totDim]));
42219566063dSJacob Faibussowitsch         if (hasPrec) PetscCall(DMPrintCellMatrix(cell, nameP, totDim, totDim, &elemMatP[(c - cStart) * totDim * totDim]));
4222a1cf66bbSMatthew G. Knepley       }
42239566063dSJacob Faibussowitsch       if (assembleJac) PetscCall(DMPlexMatSetClosure(dm, section, globalSection, Jac, cell, &elemMat[(c - cStart) * totDim * totDim], ADD_VALUES));
42249566063dSJacob Faibussowitsch       PetscCall(DMPlexMatSetClosure(dm, section, globalSection, JP, cell, &elemMat[(c - cStart) * totDim * totDim], ADD_VALUES));
4225a1cf66bbSMatthew G. Knepley     }
4226a1cf66bbSMatthew G. Knepley   }
4227a1cf66bbSMatthew G. Knepley   /* Cleanup */
42289566063dSJacob Faibussowitsch   PetscCall(DMSNESRestoreFEGeom(coordField, cellIS, qGeom, PETSC_FALSE, &cgeomFEM));
42299566063dSJacob Faibussowitsch   PetscCall(PetscQuadratureDestroy(&qGeom));
42309566063dSJacob Faibussowitsch   if (hasFV) PetscCall(MatSetOption(JacP, MAT_IGNORE_ZERO_ENTRIES, PETSC_FALSE));
42319566063dSJacob Faibussowitsch   PetscCall(DMRestoreWorkArray(dm, Nf, MPIU_BOOL, &isFE));
42329566063dSJacob Faibussowitsch   PetscCall(DMRestoreWorkArray(dm, ((1 + (X_t ? 1 : 0) + (dmAux ? 1 : 0)) * totDim + ((hasJac ? 1 : 0) + (hasPrec ? 1 : 0) + (hasDyn ? 1 : 0)) * totDim * totDim) * chunkSize, MPIU_SCALAR, &work));
4233a1cf66bbSMatthew G. Knepley   /* Compute boundary integrals */
42349566063dSJacob Faibussowitsch   /* PetscCall(DMPlexComputeBdJacobian_Internal(dm, X, X_t, t, X_tShift, Jac, JacP, ctx)); */
4235a1cf66bbSMatthew G. Knepley   /* Assemble matrix */
42369371c9d4SSatish Balay   if (assembleJac) {
42379371c9d4SSatish Balay     PetscCall(MatAssemblyBegin(Jac, MAT_FINAL_ASSEMBLY));
42389371c9d4SSatish Balay     PetscCall(MatAssemblyEnd(Jac, MAT_FINAL_ASSEMBLY));
42399371c9d4SSatish Balay   }
42409371c9d4SSatish Balay   PetscCall(MatAssemblyBegin(JacP, MAT_FINAL_ASSEMBLY));
42419371c9d4SSatish Balay   PetscCall(MatAssemblyEnd(JacP, MAT_FINAL_ASSEMBLY));
42429566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(DMPLEX_JacobianFEM, dm, 0, 0, 0));
42433ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
4244a1cf66bbSMatthew G. Knepley }
42453e9753d6SMatthew G. Knepley 
42463e9753d6SMatthew G. Knepley /******** FEM Assembly Function ********/
42473e9753d6SMatthew G. Knepley 
4248d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMConvertPlex_Internal(DM dm, DM *plex, PetscBool copy)
4249d71ae5a4SJacob Faibussowitsch {
42503e9753d6SMatthew G. Knepley   PetscBool isPlex;
42513e9753d6SMatthew G. Knepley 
42523e9753d6SMatthew G. Knepley   PetscFunctionBegin;
42539566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)dm, DMPLEX, &isPlex));
42543e9753d6SMatthew G. Knepley   if (isPlex) {
42553e9753d6SMatthew G. Knepley     *plex = dm;
42569566063dSJacob Faibussowitsch     PetscCall(PetscObjectReference((PetscObject)dm));
42573e9753d6SMatthew G. Knepley   } else {
42589566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)dm, "dm_plex", (PetscObject *)plex));
42593e9753d6SMatthew G. Knepley     if (!*plex) {
42609566063dSJacob Faibussowitsch       PetscCall(DMConvert(dm, DMPLEX, plex));
42619566063dSJacob Faibussowitsch       PetscCall(PetscObjectCompose((PetscObject)dm, "dm_plex", (PetscObject)*plex));
42621baa6e33SBarry Smith       if (copy) PetscCall(DMCopyAuxiliaryVec(dm, *plex));
42633e9753d6SMatthew G. Knepley     } else {
42649566063dSJacob Faibussowitsch       PetscCall(PetscObjectReference((PetscObject)*plex));
42653e9753d6SMatthew G. Knepley     }
42663e9753d6SMatthew G. Knepley   }
42673ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
42683e9753d6SMatthew G. Knepley }
42693e9753d6SMatthew G. Knepley 
42703e9753d6SMatthew G. Knepley /*@
42713e9753d6SMatthew G. Knepley   DMPlexGetGeometryFVM - Return precomputed geometric data
42723e9753d6SMatthew G. Knepley 
4273a1cb98faSBarry Smith   Collective on dm
42743e9753d6SMatthew G. Knepley 
42753e9753d6SMatthew G. Knepley   Input Parameter:
4276a1cb98faSBarry Smith . dm - The `DM`
42773e9753d6SMatthew G. Knepley 
42783e9753d6SMatthew G. Knepley   Output Parameters:
42793e9753d6SMatthew G. Knepley + facegeom - The values precomputed from face geometry
42803e9753d6SMatthew G. Knepley . cellgeom - The values precomputed from cell geometry
42813e9753d6SMatthew G. Knepley - minRadius - The minimum radius over the mesh of an inscribed sphere in a cell
42823e9753d6SMatthew G. Knepley 
42833e9753d6SMatthew G. Knepley   Level: developer
42843e9753d6SMatthew G. Knepley 
4285a1cb98faSBarry Smith .seealso: [](chapter_unstructured), `DM`, `DMPLEX`, `DMTSSetRHSFunctionLocal()`
42863e9753d6SMatthew G. Knepley @*/
4287d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexGetGeometryFVM(DM dm, Vec *facegeom, Vec *cellgeom, PetscReal *minRadius)
4288d71ae5a4SJacob Faibussowitsch {
42893e9753d6SMatthew G. Knepley   DM plex;
42903e9753d6SMatthew G. Knepley 
42913e9753d6SMatthew G. Knepley   PetscFunctionBegin;
42923e9753d6SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
42939566063dSJacob Faibussowitsch   PetscCall(DMConvertPlex_Internal(dm, &plex, PETSC_TRUE));
42949566063dSJacob Faibussowitsch   PetscCall(DMPlexGetDataFVM(plex, NULL, cellgeom, facegeom, NULL));
42959566063dSJacob Faibussowitsch   if (minRadius) PetscCall(DMPlexGetMinRadius(plex, minRadius));
42969566063dSJacob Faibussowitsch   PetscCall(DMDestroy(&plex));
42973ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
42983e9753d6SMatthew G. Knepley }
42993e9753d6SMatthew G. Knepley 
43003e9753d6SMatthew G. Knepley /*@
43013e9753d6SMatthew G. Knepley   DMPlexGetGradientDM - Return gradient data layout
43023e9753d6SMatthew G. Knepley 
4303a1cb98faSBarry Smith   Collective on dm
43043e9753d6SMatthew G. Knepley 
43053e9753d6SMatthew G. Knepley   Input Parameters:
4306a1cb98faSBarry Smith + dm - The `DM`
43073e9753d6SMatthew G. Knepley - fv - The PetscFV
43083e9753d6SMatthew G. Knepley 
43093e9753d6SMatthew G. Knepley   Output Parameter:
43103e9753d6SMatthew G. Knepley . dmGrad - The layout for gradient values
43113e9753d6SMatthew G. Knepley 
43123e9753d6SMatthew G. Knepley   Level: developer
43133e9753d6SMatthew G. Knepley 
4314a1cb98faSBarry Smith .seealso: [](chapter_unstructured), `DM`, `DMPLEX`, `DMPlexGetGeometryFVM()`
43153e9753d6SMatthew G. Knepley @*/
4316d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexGetGradientDM(DM dm, PetscFV fv, DM *dmGrad)
4317d71ae5a4SJacob Faibussowitsch {
43183e9753d6SMatthew G. Knepley   DM        plex;
43193e9753d6SMatthew G. Knepley   PetscBool computeGradients;
43203e9753d6SMatthew G. Knepley 
43213e9753d6SMatthew G. Knepley   PetscFunctionBegin;
43223e9753d6SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
43233e9753d6SMatthew G. Knepley   PetscValidHeaderSpecific(fv, PETSCFV_CLASSID, 2);
43243e9753d6SMatthew G. Knepley   PetscValidPointer(dmGrad, 3);
43259566063dSJacob Faibussowitsch   PetscCall(PetscFVGetComputeGradients(fv, &computeGradients));
43269371c9d4SSatish Balay   if (!computeGradients) {
43279371c9d4SSatish Balay     *dmGrad = NULL;
43283ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
43299371c9d4SSatish Balay   }
43309566063dSJacob Faibussowitsch   PetscCall(DMConvertPlex_Internal(dm, &plex, PETSC_TRUE));
43319566063dSJacob Faibussowitsch   PetscCall(DMPlexGetDataFVM(plex, fv, NULL, NULL, dmGrad));
43329566063dSJacob Faibussowitsch   PetscCall(DMDestroy(&plex));
43333ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
43343e9753d6SMatthew G. Knepley }
43353e9753d6SMatthew G. Knepley 
4336d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexComputeBdResidual_Single_Internal(DM dm, PetscReal t, PetscWeakForm wf, PetscFormKey key, Vec locX, Vec locX_t, Vec locF, DMField coordField, IS facetIS)
4337d71ae5a4SJacob Faibussowitsch {
43383e9753d6SMatthew G. Knepley   DM_Plex        *mesh = (DM_Plex *)dm->data;
43393e9753d6SMatthew G. Knepley   DM              plex = NULL, plexA = NULL;
43403e9753d6SMatthew G. Knepley   DMEnclosureType encAux;
43413e9753d6SMatthew G. Knepley   PetscDS         prob, probAux       = NULL;
43423e9753d6SMatthew G. Knepley   PetscSection    section, sectionAux = NULL;
43433e9753d6SMatthew G. Knepley   Vec             locA = NULL;
43443e9753d6SMatthew G. Knepley   PetscScalar    *u = NULL, *u_t = NULL, *a = NULL, *elemVec = NULL;
43453e9753d6SMatthew G. Knepley   PetscInt        totDim, totDimAux = 0;
43463e9753d6SMatthew G. Knepley 
43473e9753d6SMatthew G. Knepley   PetscFunctionBegin;
43489566063dSJacob Faibussowitsch   PetscCall(DMConvert(dm, DMPLEX, &plex));
43499566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dm, &section));
43509566063dSJacob Faibussowitsch   PetscCall(DMGetDS(dm, &prob));
43519566063dSJacob Faibussowitsch   PetscCall(PetscDSGetTotalDimension(prob, &totDim));
43529566063dSJacob Faibussowitsch   PetscCall(DMGetAuxiliaryVec(dm, key.label, key.value, key.part, &locA));
43533e9753d6SMatthew G. Knepley   if (locA) {
43543e9753d6SMatthew G. Knepley     DM dmAux;
43553e9753d6SMatthew G. Knepley 
43569566063dSJacob Faibussowitsch     PetscCall(VecGetDM(locA, &dmAux));
43579566063dSJacob Faibussowitsch     PetscCall(DMGetEnclosureRelation(dmAux, dm, &encAux));
43589566063dSJacob Faibussowitsch     PetscCall(DMConvert(dmAux, DMPLEX, &plexA));
43599566063dSJacob Faibussowitsch     PetscCall(DMGetDS(plexA, &probAux));
43609566063dSJacob Faibussowitsch     PetscCall(PetscDSGetTotalDimension(probAux, &totDimAux));
43619566063dSJacob Faibussowitsch     PetscCall(DMGetLocalSection(plexA, &sectionAux));
43623e9753d6SMatthew G. Knepley   }
43630c290148SMatthew G. Knepley   {
43643e9753d6SMatthew G. Knepley     PetscFEGeom    *fgeom;
43653e9753d6SMatthew G. Knepley     PetscInt        maxDegree;
43663e9753d6SMatthew G. Knepley     PetscQuadrature qGeom = NULL;
43673e9753d6SMatthew G. Knepley     IS              pointIS;
43683e9753d6SMatthew G. Knepley     const PetscInt *points;
43693e9753d6SMatthew G. Knepley     PetscInt        numFaces, face, Nq;
43703e9753d6SMatthew G. Knepley 
43719566063dSJacob Faibussowitsch     PetscCall(DMLabelGetStratumIS(key.label, key.value, &pointIS));
43720c290148SMatthew G. Knepley     if (!pointIS) goto end; /* No points with that id on this process */
43733e9753d6SMatthew G. Knepley     {
43743e9753d6SMatthew G. Knepley       IS isectIS;
43753e9753d6SMatthew G. Knepley 
43763e9753d6SMatthew G. Knepley       /* TODO: Special cases of ISIntersect where it is quick to check a priori if one is a superset of the other */
43779566063dSJacob Faibussowitsch       PetscCall(ISIntersect_Caching_Internal(facetIS, pointIS, &isectIS));
43789566063dSJacob Faibussowitsch       PetscCall(ISDestroy(&pointIS));
43793e9753d6SMatthew G. Knepley       pointIS = isectIS;
43803e9753d6SMatthew G. Knepley     }
43819566063dSJacob Faibussowitsch     PetscCall(ISGetLocalSize(pointIS, &numFaces));
43829566063dSJacob Faibussowitsch     PetscCall(ISGetIndices(pointIS, &points));
43839566063dSJacob Faibussowitsch     PetscCall(PetscMalloc4(numFaces * totDim, &u, locX_t ? numFaces * totDim : 0, &u_t, numFaces * totDim, &elemVec, locA ? numFaces * totDimAux : 0, &a));
43849566063dSJacob Faibussowitsch     PetscCall(DMFieldGetDegree(coordField, pointIS, NULL, &maxDegree));
438548a46eb9SPierre Jolivet     if (maxDegree <= 1) PetscCall(DMFieldCreateDefaultQuadrature(coordField, pointIS, &qGeom));
43863e9753d6SMatthew G. Knepley     if (!qGeom) {
43873e9753d6SMatthew G. Knepley       PetscFE fe;
43883e9753d6SMatthew G. Knepley 
43899566063dSJacob Faibussowitsch       PetscCall(PetscDSGetDiscretization(prob, key.field, (PetscObject *)&fe));
43909566063dSJacob Faibussowitsch       PetscCall(PetscFEGetFaceQuadrature(fe, &qGeom));
43919566063dSJacob Faibussowitsch       PetscCall(PetscObjectReference((PetscObject)qGeom));
43923e9753d6SMatthew G. Knepley     }
43939566063dSJacob Faibussowitsch     PetscCall(PetscQuadratureGetData(qGeom, NULL, NULL, &Nq, NULL, NULL));
43949566063dSJacob Faibussowitsch     PetscCall(DMSNESGetFEGeom(coordField, pointIS, qGeom, PETSC_TRUE, &fgeom));
43953e9753d6SMatthew G. Knepley     for (face = 0; face < numFaces; ++face) {
4396f15274beSMatthew Knepley       const PetscInt point = points[face], *support;
43973e9753d6SMatthew G. Knepley       PetscScalar   *x     = NULL;
4398f15274beSMatthew Knepley       PetscInt       i;
43993e9753d6SMatthew G. Knepley 
44009566063dSJacob Faibussowitsch       PetscCall(DMPlexGetSupport(dm, point, &support));
44019566063dSJacob Faibussowitsch       PetscCall(DMPlexVecGetClosure(plex, section, locX, support[0], NULL, &x));
44023e9753d6SMatthew G. Knepley       for (i = 0; i < totDim; ++i) u[face * totDim + i] = x[i];
44039566063dSJacob Faibussowitsch       PetscCall(DMPlexVecRestoreClosure(plex, section, locX, support[0], NULL, &x));
44043e9753d6SMatthew G. Knepley       if (locX_t) {
44059566063dSJacob Faibussowitsch         PetscCall(DMPlexVecGetClosure(plex, section, locX_t, support[0], NULL, &x));
44063e9753d6SMatthew G. Knepley         for (i = 0; i < totDim; ++i) u_t[face * totDim + i] = x[i];
44079566063dSJacob Faibussowitsch         PetscCall(DMPlexVecRestoreClosure(plex, section, locX_t, support[0], NULL, &x));
44083e9753d6SMatthew G. Knepley       }
44093e9753d6SMatthew G. Knepley       if (locA) {
44103e9753d6SMatthew G. Knepley         PetscInt subp;
44113e9753d6SMatthew G. Knepley 
44129566063dSJacob Faibussowitsch         PetscCall(DMGetEnclosurePoint(plexA, dm, encAux, support[0], &subp));
44139566063dSJacob Faibussowitsch         PetscCall(DMPlexVecGetClosure(plexA, sectionAux, locA, subp, NULL, &x));
44143e9753d6SMatthew G. Knepley         for (i = 0; i < totDimAux; ++i) a[face * totDimAux + i] = x[i];
44159566063dSJacob Faibussowitsch         PetscCall(DMPlexVecRestoreClosure(plexA, sectionAux, locA, subp, NULL, &x));
44163e9753d6SMatthew G. Knepley       }
44173e9753d6SMatthew G. Knepley     }
44189566063dSJacob Faibussowitsch     PetscCall(PetscArrayzero(elemVec, numFaces * totDim));
44193e9753d6SMatthew G. Knepley     {
44203e9753d6SMatthew G. Knepley       PetscFE      fe;
44213e9753d6SMatthew G. Knepley       PetscInt     Nb;
44223e9753d6SMatthew G. Knepley       PetscFEGeom *chunkGeom = NULL;
44233e9753d6SMatthew G. Knepley       /* Conforming batches */
44243e9753d6SMatthew G. Knepley       PetscInt numChunks, numBatches, numBlocks, Ne, blockSize, batchSize;
44253e9753d6SMatthew G. Knepley       /* Remainder */
44263e9753d6SMatthew G. Knepley       PetscInt Nr, offset;
44273e9753d6SMatthew G. Knepley 
44289566063dSJacob Faibussowitsch       PetscCall(PetscDSGetDiscretization(prob, key.field, (PetscObject *)&fe));
44299566063dSJacob Faibussowitsch       PetscCall(PetscFEGetDimension(fe, &Nb));
44309566063dSJacob Faibussowitsch       PetscCall(PetscFEGetTileSizes(fe, NULL, &numBlocks, NULL, &numBatches));
44313e9753d6SMatthew G. Knepley       /* TODO: documentation is unclear about what is going on with these numbers: how should Nb / Nq factor in ? */
44323e9753d6SMatthew G. Knepley       blockSize = Nb;
44333e9753d6SMatthew G. Knepley       batchSize = numBlocks * blockSize;
44349566063dSJacob Faibussowitsch       PetscCall(PetscFESetTileSizes(fe, blockSize, numBlocks, batchSize, numBatches));
44353e9753d6SMatthew G. Knepley       numChunks = numFaces / (numBatches * batchSize);
44363e9753d6SMatthew G. Knepley       Ne        = numChunks * numBatches * batchSize;
44373e9753d6SMatthew G. Knepley       Nr        = numFaces % (numBatches * batchSize);
44383e9753d6SMatthew G. Knepley       offset    = numFaces - Nr;
44399566063dSJacob Faibussowitsch       PetscCall(PetscFEGeomGetChunk(fgeom, 0, offset, &chunkGeom));
44409566063dSJacob Faibussowitsch       PetscCall(PetscFEIntegrateBdResidual(prob, wf, key, Ne, chunkGeom, u, u_t, probAux, a, t, elemVec));
44419566063dSJacob Faibussowitsch       PetscCall(PetscFEGeomRestoreChunk(fgeom, 0, offset, &chunkGeom));
44429566063dSJacob Faibussowitsch       PetscCall(PetscFEGeomGetChunk(fgeom, offset, numFaces, &chunkGeom));
44439566063dSJacob Faibussowitsch       PetscCall(PetscFEIntegrateBdResidual(prob, wf, key, Nr, chunkGeom, &u[offset * totDim], u_t ? &u_t[offset * totDim] : NULL, probAux, a ? &a[offset * totDimAux] : NULL, t, &elemVec[offset * totDim]));
44449566063dSJacob Faibussowitsch       PetscCall(PetscFEGeomRestoreChunk(fgeom, offset, numFaces, &chunkGeom));
44453e9753d6SMatthew G. Knepley     }
44463e9753d6SMatthew G. Knepley     for (face = 0; face < numFaces; ++face) {
44473e9753d6SMatthew G. Knepley       const PetscInt point = points[face], *support;
44483e9753d6SMatthew G. Knepley 
44499566063dSJacob Faibussowitsch       if (mesh->printFEM > 1) PetscCall(DMPrintCellVector(point, "BdResidual", totDim, &elemVec[face * totDim]));
44509566063dSJacob Faibussowitsch       PetscCall(DMPlexGetSupport(plex, point, &support));
44519566063dSJacob Faibussowitsch       PetscCall(DMPlexVecSetClosure(plex, NULL, locF, support[0], &elemVec[face * totDim], ADD_ALL_VALUES));
44523e9753d6SMatthew G. Knepley     }
44539566063dSJacob Faibussowitsch     PetscCall(DMSNESRestoreFEGeom(coordField, pointIS, qGeom, PETSC_TRUE, &fgeom));
44549566063dSJacob Faibussowitsch     PetscCall(PetscQuadratureDestroy(&qGeom));
44559566063dSJacob Faibussowitsch     PetscCall(ISRestoreIndices(pointIS, &points));
44569566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&pointIS));
44579566063dSJacob Faibussowitsch     PetscCall(PetscFree4(u, u_t, elemVec, a));
44583e9753d6SMatthew G. Knepley   }
44590c290148SMatthew G. Knepley end:
44609566063dSJacob Faibussowitsch   PetscCall(DMDestroy(&plex));
44619566063dSJacob Faibussowitsch   PetscCall(DMDestroy(&plexA));
44623ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
44633e9753d6SMatthew G. Knepley }
44643e9753d6SMatthew G. Knepley 
4465d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeBdResidualSingle(DM dm, PetscReal t, PetscWeakForm wf, PetscFormKey key, Vec locX, Vec locX_t, Vec locF)
4466d71ae5a4SJacob Faibussowitsch {
44673e9753d6SMatthew G. Knepley   DMField  coordField;
44683e9753d6SMatthew G. Knepley   DMLabel  depthLabel;
44693e9753d6SMatthew G. Knepley   IS       facetIS;
44703e9753d6SMatthew G. Knepley   PetscInt dim;
44713e9753d6SMatthew G. Knepley 
44723e9753d6SMatthew G. Knepley   PetscFunctionBegin;
44739566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dm, &dim));
44749566063dSJacob Faibussowitsch   PetscCall(DMPlexGetDepthLabel(dm, &depthLabel));
44759566063dSJacob Faibussowitsch   PetscCall(DMLabelGetStratumIS(depthLabel, dim - 1, &facetIS));
44769566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateField(dm, &coordField));
44779566063dSJacob Faibussowitsch   PetscCall(DMPlexComputeBdResidual_Single_Internal(dm, t, wf, key, locX, locX_t, locF, coordField, facetIS));
44789566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&facetIS));
44793ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
44803e9753d6SMatthew G. Knepley }
44813e9753d6SMatthew G. Knepley 
4482d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeBdResidual_Internal(DM dm, Vec locX, Vec locX_t, PetscReal t, Vec locF, void *user)
4483d71ae5a4SJacob Faibussowitsch {
44843e9753d6SMatthew G. Knepley   PetscDS  prob;
44853e9753d6SMatthew G. Knepley   PetscInt numBd, bd;
44863e9753d6SMatthew G. Knepley   DMField  coordField = NULL;
44873e9753d6SMatthew G. Knepley   IS       facetIS    = NULL;
44883e9753d6SMatthew G. Knepley   DMLabel  depthLabel;
44893e9753d6SMatthew G. Knepley   PetscInt dim;
44903e9753d6SMatthew G. Knepley 
44913e9753d6SMatthew G. Knepley   PetscFunctionBegin;
44929566063dSJacob Faibussowitsch   PetscCall(DMGetDS(dm, &prob));
44939566063dSJacob Faibussowitsch   PetscCall(DMPlexGetDepthLabel(dm, &depthLabel));
44949566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dm, &dim));
44959566063dSJacob Faibussowitsch   PetscCall(DMLabelGetStratumIS(depthLabel, dim - 1, &facetIS));
44969566063dSJacob Faibussowitsch   PetscCall(PetscDSGetNumBoundary(prob, &numBd));
44973e9753d6SMatthew G. Knepley   for (bd = 0; bd < numBd; ++bd) {
449845480ffeSMatthew G. Knepley     PetscWeakForm           wf;
44993e9753d6SMatthew G. Knepley     DMBoundaryConditionType type;
45003e9753d6SMatthew G. Knepley     DMLabel                 label;
45013e9753d6SMatthew G. Knepley     const PetscInt         *values;
45020c290148SMatthew G. Knepley     PetscInt                field, numValues, v;
45033e9753d6SMatthew G. Knepley     PetscObject             obj;
45043e9753d6SMatthew G. Knepley     PetscClassId            id;
45050c290148SMatthew G. Knepley     PetscFormKey            key;
45063e9753d6SMatthew G. Knepley 
45079566063dSJacob Faibussowitsch     PetscCall(PetscDSGetBoundary(prob, bd, &wf, &type, NULL, &label, &numValues, &values, &field, NULL, NULL, NULL, NULL, NULL));
45083d3e5d66SMatthew G. Knepley     if (type & DM_BC_ESSENTIAL) continue;
45099566063dSJacob Faibussowitsch     PetscCall(PetscDSGetDiscretization(prob, field, &obj));
45109566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetClassId(obj, &id));
45113d3e5d66SMatthew G. Knepley     if (id != PETSCFE_CLASSID) continue;
45123e9753d6SMatthew G. Knepley     if (!facetIS) {
45133e9753d6SMatthew G. Knepley       DMLabel  depthLabel;
45143e9753d6SMatthew G. Knepley       PetscInt dim;
45153e9753d6SMatthew G. Knepley 
45169566063dSJacob Faibussowitsch       PetscCall(DMPlexGetDepthLabel(dm, &depthLabel));
45179566063dSJacob Faibussowitsch       PetscCall(DMGetDimension(dm, &dim));
45189566063dSJacob Faibussowitsch       PetscCall(DMLabelGetStratumIS(depthLabel, dim - 1, &facetIS));
45193e9753d6SMatthew G. Knepley     }
45209566063dSJacob Faibussowitsch     PetscCall(DMGetCoordinateField(dm, &coordField));
45210c290148SMatthew G. Knepley     for (v = 0; v < numValues; ++v) {
45220c290148SMatthew G. Knepley       key.label = label;
45230c290148SMatthew G. Knepley       key.value = values[v];
45240c290148SMatthew G. Knepley       key.field = field;
45250c290148SMatthew G. Knepley       key.part  = 0;
45269566063dSJacob Faibussowitsch       PetscCall(DMPlexComputeBdResidual_Single_Internal(dm, t, wf, key, locX, locX_t, locF, coordField, facetIS));
45270c290148SMatthew G. Knepley     }
45283e9753d6SMatthew G. Knepley   }
45299566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&facetIS));
45303ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
45313e9753d6SMatthew G. Knepley }
45323e9753d6SMatthew G. Knepley 
4533d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeResidual_Internal(DM dm, PetscFormKey key, IS cellIS, PetscReal time, Vec locX, Vec locX_t, PetscReal t, Vec locF, void *user)
4534d71ae5a4SJacob Faibussowitsch {
45353e9753d6SMatthew G. Knepley   DM_Plex         *mesh       = (DM_Plex *)dm->data;
45363e9753d6SMatthew G. Knepley   const char      *name       = "Residual";
45373e9753d6SMatthew G. Knepley   DM               dmAux      = NULL;
45383e9753d6SMatthew G. Knepley   DM               dmGrad     = NULL;
45393e9753d6SMatthew G. Knepley   DMLabel          ghostLabel = NULL;
45406528b96dSMatthew G. Knepley   PetscDS          ds         = NULL;
45416528b96dSMatthew G. Knepley   PetscDS          dsAux      = NULL;
45423e9753d6SMatthew G. Knepley   PetscSection     section    = NULL;
45433e9753d6SMatthew G. Knepley   PetscBool        useFEM     = PETSC_FALSE;
45443e9753d6SMatthew G. Knepley   PetscBool        useFVM     = PETSC_FALSE;
45453e9753d6SMatthew G. Knepley   PetscBool        isImplicit = (locX_t || time == PETSC_MIN_REAL) ? PETSC_TRUE : PETSC_FALSE;
45463e9753d6SMatthew G. Knepley   PetscFV          fvm        = NULL;
45473e9753d6SMatthew G. Knepley   PetscFVCellGeom *cgeomFVM   = NULL;
45483e9753d6SMatthew G. Knepley   PetscFVFaceGeom *fgeomFVM   = NULL;
45493e9753d6SMatthew G. Knepley   DMField          coordField = NULL;
45503e9753d6SMatthew G. Knepley   Vec              locA, cellGeometryFVM = NULL, faceGeometryFVM = NULL, grad, locGrad = NULL;
45513e9753d6SMatthew G. Knepley   PetscScalar     *u = NULL, *u_t, *a, *uL, *uR;
45523e9753d6SMatthew G. Knepley   IS               chunkIS;
45533e9753d6SMatthew G. Knepley   const PetscInt  *cells;
45543e9753d6SMatthew G. Knepley   PetscInt         cStart, cEnd, numCells;
45553e9753d6SMatthew G. Knepley   PetscInt         Nf, f, totDim, totDimAux, numChunks, cellChunkSize, faceChunkSize, chunk, fStart, fEnd;
45563e9753d6SMatthew G. Knepley   PetscInt         maxDegree  = PETSC_MAX_INT;
45573e9753d6SMatthew G. Knepley   PetscQuadrature  affineQuad = NULL, *quads = NULL;
45583e9753d6SMatthew G. Knepley   PetscFEGeom     *affineGeom = NULL, **geoms = NULL;
45593e9753d6SMatthew G. Knepley 
45603e9753d6SMatthew G. Knepley   PetscFunctionBegin;
45613ba16761SJacob Faibussowitsch   if (!cellIS) PetscFunctionReturn(PETSC_SUCCESS);
4562437e83fbSMatthew G. Knepley   PetscCall(ISGetPointRange(cellIS, &cStart, &cEnd, &cells));
45633ba16761SJacob Faibussowitsch   if (cStart >= cEnd) PetscFunctionReturn(PETSC_SUCCESS);
45649566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(DMPLEX_ResidualFEM, dm, 0, 0, 0));
45653e9753d6SMatthew G. Knepley   /* TODO The places where we have to use isFE are probably the member functions for the PetscDisc class */
45663e9753d6SMatthew G. Knepley   /* TODO The FVM geometry is over-manipulated. Make the precalc functions return exactly what we need */
45673e9753d6SMatthew G. Knepley   /* FEM+FVM */
45689566063dSJacob Faibussowitsch   PetscCall(DMPlexGetHeightStratum(dm, 1, &fStart, &fEnd));
45693e9753d6SMatthew G. Knepley   /* 1: Get sizes from dm and dmAux */
45709566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dm, &section));
45719566063dSJacob Faibussowitsch   PetscCall(DMGetLabel(dm, "ghost", &ghostLabel));
45729566063dSJacob Faibussowitsch   PetscCall(DMGetCellDS(dm, cells ? cells[cStart] : cStart, &ds));
45739566063dSJacob Faibussowitsch   PetscCall(PetscDSGetNumFields(ds, &Nf));
45749566063dSJacob Faibussowitsch   PetscCall(PetscDSGetTotalDimension(ds, &totDim));
45759566063dSJacob Faibussowitsch   PetscCall(DMGetAuxiliaryVec(dm, key.label, key.value, key.part, &locA));
45763e9753d6SMatthew G. Knepley   if (locA) {
45773e9753d6SMatthew G. Knepley     PetscInt subcell;
45789566063dSJacob Faibussowitsch     PetscCall(VecGetDM(locA, &dmAux));
45791059d808SMatthew G. Knepley     PetscCall(DMGetEnclosurePoint(dmAux, dm, DM_ENC_UNKNOWN, cells ? cells[cStart] : cStart, &subcell));
45809566063dSJacob Faibussowitsch     PetscCall(DMGetCellDS(dmAux, subcell, &dsAux));
45819566063dSJacob Faibussowitsch     PetscCall(PetscDSGetTotalDimension(dsAux, &totDimAux));
45823e9753d6SMatthew G. Knepley   }
45833e9753d6SMatthew G. Knepley   /* 2: Get geometric data */
45843e9753d6SMatthew G. Knepley   for (f = 0; f < Nf; ++f) {
45853e9753d6SMatthew G. Knepley     PetscObject  obj;
45863e9753d6SMatthew G. Knepley     PetscClassId id;
45873e9753d6SMatthew G. Knepley     PetscBool    fimp;
45883e9753d6SMatthew G. Knepley 
45899566063dSJacob Faibussowitsch     PetscCall(PetscDSGetImplicit(ds, f, &fimp));
45903e9753d6SMatthew G. Knepley     if (isImplicit != fimp) continue;
45919566063dSJacob Faibussowitsch     PetscCall(PetscDSGetDiscretization(ds, f, &obj));
45929566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetClassId(obj, &id));
4593ad540459SPierre Jolivet     if (id == PETSCFE_CLASSID) useFEM = PETSC_TRUE;
45949371c9d4SSatish Balay     if (id == PETSCFV_CLASSID) {
45959371c9d4SSatish Balay       useFVM = PETSC_TRUE;
45969371c9d4SSatish Balay       fvm    = (PetscFV)obj;
45979371c9d4SSatish Balay     }
45983e9753d6SMatthew G. Knepley   }
45993e9753d6SMatthew G. Knepley   if (useFEM) {
46009566063dSJacob Faibussowitsch     PetscCall(DMGetCoordinateField(dm, &coordField));
46019566063dSJacob Faibussowitsch     PetscCall(DMFieldGetDegree(coordField, cellIS, NULL, &maxDegree));
46023e9753d6SMatthew G. Knepley     if (maxDegree <= 1) {
46039566063dSJacob Faibussowitsch       PetscCall(DMFieldCreateDefaultQuadrature(coordField, cellIS, &affineQuad));
460448a46eb9SPierre Jolivet       if (affineQuad) PetscCall(DMSNESGetFEGeom(coordField, cellIS, affineQuad, PETSC_FALSE, &affineGeom));
46053e9753d6SMatthew G. Knepley     } else {
46069566063dSJacob Faibussowitsch       PetscCall(PetscCalloc2(Nf, &quads, Nf, &geoms));
46073e9753d6SMatthew G. Knepley       for (f = 0; f < Nf; ++f) {
46083e9753d6SMatthew G. Knepley         PetscObject  obj;
46093e9753d6SMatthew G. Knepley         PetscClassId id;
46103e9753d6SMatthew G. Knepley         PetscBool    fimp;
46113e9753d6SMatthew G. Knepley 
46129566063dSJacob Faibussowitsch         PetscCall(PetscDSGetImplicit(ds, f, &fimp));
46133e9753d6SMatthew G. Knepley         if (isImplicit != fimp) continue;
46149566063dSJacob Faibussowitsch         PetscCall(PetscDSGetDiscretization(ds, f, &obj));
46159566063dSJacob Faibussowitsch         PetscCall(PetscObjectGetClassId(obj, &id));
46163e9753d6SMatthew G. Knepley         if (id == PETSCFE_CLASSID) {
46173e9753d6SMatthew G. Knepley           PetscFE fe = (PetscFE)obj;
46183e9753d6SMatthew G. Knepley 
46199566063dSJacob Faibussowitsch           PetscCall(PetscFEGetQuadrature(fe, &quads[f]));
46209566063dSJacob Faibussowitsch           PetscCall(PetscObjectReference((PetscObject)quads[f]));
46219566063dSJacob Faibussowitsch           PetscCall(DMSNESGetFEGeom(coordField, cellIS, quads[f], PETSC_FALSE, &geoms[f]));
46223e9753d6SMatthew G. Knepley         }
46233e9753d6SMatthew G. Knepley       }
46243e9753d6SMatthew G. Knepley     }
46253e9753d6SMatthew G. Knepley   }
46263e9753d6SMatthew G. Knepley   if (useFVM) {
46279566063dSJacob Faibussowitsch     PetscCall(DMPlexGetGeometryFVM(dm, &faceGeometryFVM, &cellGeometryFVM, NULL));
46289566063dSJacob Faibussowitsch     PetscCall(VecGetArrayRead(faceGeometryFVM, (const PetscScalar **)&fgeomFVM));
46299566063dSJacob Faibussowitsch     PetscCall(VecGetArrayRead(cellGeometryFVM, (const PetscScalar **)&cgeomFVM));
46303e9753d6SMatthew G. Knepley     /* Reconstruct and limit cell gradients */
46319566063dSJacob Faibussowitsch     PetscCall(DMPlexGetGradientDM(dm, fvm, &dmGrad));
46323e9753d6SMatthew G. Knepley     if (dmGrad) {
46339566063dSJacob Faibussowitsch       PetscCall(DMPlexGetHeightStratum(dm, 1, &fStart, &fEnd));
46349566063dSJacob Faibussowitsch       PetscCall(DMGetGlobalVector(dmGrad, &grad));
46359566063dSJacob Faibussowitsch       PetscCall(DMPlexReconstructGradients_Internal(dm, fvm, fStart, fEnd, faceGeometryFVM, cellGeometryFVM, locX, grad));
46363e9753d6SMatthew G. Knepley       /* Communicate gradient values */
46379566063dSJacob Faibussowitsch       PetscCall(DMGetLocalVector(dmGrad, &locGrad));
46389566063dSJacob Faibussowitsch       PetscCall(DMGlobalToLocalBegin(dmGrad, grad, INSERT_VALUES, locGrad));
46399566063dSJacob Faibussowitsch       PetscCall(DMGlobalToLocalEnd(dmGrad, grad, INSERT_VALUES, locGrad));
46409566063dSJacob Faibussowitsch       PetscCall(DMRestoreGlobalVector(dmGrad, &grad));
46413e9753d6SMatthew G. Knepley     }
46423e9753d6SMatthew G. Knepley     /* Handle non-essential (e.g. outflow) boundary values */
46439566063dSJacob Faibussowitsch     PetscCall(DMPlexInsertBoundaryValues(dm, PETSC_FALSE, locX, time, faceGeometryFVM, cellGeometryFVM, locGrad));
46443e9753d6SMatthew G. Knepley   }
46453e9753d6SMatthew G. Knepley   /* Loop over chunks */
46469566063dSJacob Faibussowitsch   if (useFEM) PetscCall(ISCreate(PETSC_COMM_SELF, &chunkIS));
46473e9753d6SMatthew G. Knepley   numCells      = cEnd - cStart;
46483e9753d6SMatthew G. Knepley   numChunks     = 1;
46493e9753d6SMatthew G. Knepley   cellChunkSize = numCells / numChunks;
46503e9753d6SMatthew G. Knepley   faceChunkSize = (fEnd - fStart) / numChunks;
46513e9753d6SMatthew G. Knepley   numChunks     = PetscMin(1, numCells);
46523e9753d6SMatthew G. Knepley   for (chunk = 0; chunk < numChunks; ++chunk) {
46533e9753d6SMatthew G. Knepley     PetscScalar     *elemVec, *fluxL, *fluxR;
46543e9753d6SMatthew G. Knepley     PetscReal       *vol;
46553e9753d6SMatthew G. Knepley     PetscFVFaceGeom *fgeom;
46563e9753d6SMatthew G. Knepley     PetscInt         cS = cStart + chunk * cellChunkSize, cE = PetscMin(cS + cellChunkSize, cEnd), numCells = cE - cS, c;
46573e9753d6SMatthew G. Knepley     PetscInt         fS = fStart + chunk * faceChunkSize, fE = PetscMin(fS + faceChunkSize, fEnd), numFaces = 0, face;
46583e9753d6SMatthew G. Knepley 
46593e9753d6SMatthew G. Knepley     /* Extract field coefficients */
46603e9753d6SMatthew G. Knepley     if (useFEM) {
46619566063dSJacob Faibussowitsch       PetscCall(ISGetPointSubrange(chunkIS, cS, cE, cells));
46629566063dSJacob Faibussowitsch       PetscCall(DMPlexGetCellFields(dm, chunkIS, locX, locX_t, locA, &u, &u_t, &a));
46639566063dSJacob Faibussowitsch       PetscCall(DMGetWorkArray(dm, numCells * totDim, MPIU_SCALAR, &elemVec));
46649566063dSJacob Faibussowitsch       PetscCall(PetscArrayzero(elemVec, numCells * totDim));
46653e9753d6SMatthew G. Knepley     }
46663e9753d6SMatthew G. Knepley     if (useFVM) {
46679566063dSJacob Faibussowitsch       PetscCall(DMPlexGetFaceFields(dm, fS, fE, locX, locX_t, faceGeometryFVM, cellGeometryFVM, locGrad, &numFaces, &uL, &uR));
46689566063dSJacob Faibussowitsch       PetscCall(DMPlexGetFaceGeometry(dm, fS, fE, faceGeometryFVM, cellGeometryFVM, &numFaces, &fgeom, &vol));
46699566063dSJacob Faibussowitsch       PetscCall(DMGetWorkArray(dm, numFaces * totDim, MPIU_SCALAR, &fluxL));
46709566063dSJacob Faibussowitsch       PetscCall(DMGetWorkArray(dm, numFaces * totDim, MPIU_SCALAR, &fluxR));
46719566063dSJacob Faibussowitsch       PetscCall(PetscArrayzero(fluxL, numFaces * totDim));
46729566063dSJacob Faibussowitsch       PetscCall(PetscArrayzero(fluxR, numFaces * totDim));
46733e9753d6SMatthew G. Knepley     }
46743e9753d6SMatthew G. Knepley     /* TODO We will interlace both our field coefficients (u, u_t, uL, uR, etc.) and our output (elemVec, fL, fR). I think this works */
46753e9753d6SMatthew G. Knepley     /* Loop over fields */
46763e9753d6SMatthew G. Knepley     for (f = 0; f < Nf; ++f) {
46773e9753d6SMatthew G. Knepley       PetscObject  obj;
46783e9753d6SMatthew G. Knepley       PetscClassId id;
46793e9753d6SMatthew G. Knepley       PetscBool    fimp;
46803e9753d6SMatthew G. Knepley       PetscInt     numChunks, numBatches, batchSize, numBlocks, blockSize, Ne, Nr, offset;
46813e9753d6SMatthew G. Knepley 
46826528b96dSMatthew G. Knepley       key.field = f;
46839566063dSJacob Faibussowitsch       PetscCall(PetscDSGetImplicit(ds, f, &fimp));
46843e9753d6SMatthew G. Knepley       if (isImplicit != fimp) continue;
46859566063dSJacob Faibussowitsch       PetscCall(PetscDSGetDiscretization(ds, f, &obj));
46869566063dSJacob Faibussowitsch       PetscCall(PetscObjectGetClassId(obj, &id));
46873e9753d6SMatthew G. Knepley       if (id == PETSCFE_CLASSID) {
46883e9753d6SMatthew G. Knepley         PetscFE         fe        = (PetscFE)obj;
46893e9753d6SMatthew G. Knepley         PetscFEGeom    *geom      = affineGeom ? affineGeom : geoms[f];
46903e9753d6SMatthew G. Knepley         PetscFEGeom    *chunkGeom = NULL;
46913e9753d6SMatthew G. Knepley         PetscQuadrature quad      = affineQuad ? affineQuad : quads[f];
46923e9753d6SMatthew G. Knepley         PetscInt        Nq, Nb;
46933e9753d6SMatthew G. Knepley 
46949566063dSJacob Faibussowitsch         PetscCall(PetscFEGetTileSizes(fe, NULL, &numBlocks, NULL, &numBatches));
46959566063dSJacob Faibussowitsch         PetscCall(PetscQuadratureGetData(quad, NULL, NULL, &Nq, NULL, NULL));
46969566063dSJacob Faibussowitsch         PetscCall(PetscFEGetDimension(fe, &Nb));
46973e9753d6SMatthew G. Knepley         blockSize = Nb;
46983e9753d6SMatthew G. Knepley         batchSize = numBlocks * blockSize;
46999566063dSJacob Faibussowitsch         PetscCall(PetscFESetTileSizes(fe, blockSize, numBlocks, batchSize, numBatches));
47003e9753d6SMatthew G. Knepley         numChunks = numCells / (numBatches * batchSize);
47013e9753d6SMatthew G. Knepley         Ne        = numChunks * numBatches * batchSize;
47023e9753d6SMatthew G. Knepley         Nr        = numCells % (numBatches * batchSize);
47033e9753d6SMatthew G. Knepley         offset    = numCells - Nr;
47043e9753d6SMatthew G. Knepley         /* Integrate FE residual to get elemVec (need fields at quadrature points) */
47053e9753d6SMatthew G. Knepley         /*   For FV, I think we use a P0 basis and the cell coefficients (for subdivided cells, we can tweak the basis tabulation to be the indicator function) */
47069566063dSJacob Faibussowitsch         PetscCall(PetscFEGeomGetChunk(geom, 0, offset, &chunkGeom));
47079566063dSJacob Faibussowitsch         PetscCall(PetscFEIntegrateResidual(ds, key, Ne, chunkGeom, u, u_t, dsAux, a, t, elemVec));
47089566063dSJacob Faibussowitsch         PetscCall(PetscFEGeomGetChunk(geom, offset, numCells, &chunkGeom));
47099566063dSJacob Faibussowitsch         PetscCall(PetscFEIntegrateResidual(ds, key, Nr, chunkGeom, &u[offset * totDim], u_t ? &u_t[offset * totDim] : NULL, dsAux, &a[offset * totDimAux], t, &elemVec[offset * totDim]));
47109566063dSJacob Faibussowitsch         PetscCall(PetscFEGeomRestoreChunk(geom, offset, numCells, &chunkGeom));
47113e9753d6SMatthew G. Knepley       } else if (id == PETSCFV_CLASSID) {
47123e9753d6SMatthew G. Knepley         PetscFV fv = (PetscFV)obj;
47133e9753d6SMatthew G. Knepley 
47143e9753d6SMatthew G. Knepley         Ne = numFaces;
47153e9753d6SMatthew G. Knepley         /* Riemann solve over faces (need fields at face centroids) */
47163e9753d6SMatthew G. Knepley         /*   We need to evaluate FE fields at those coordinates */
47179566063dSJacob Faibussowitsch         PetscCall(PetscFVIntegrateRHSFunction(fv, ds, f, Ne, fgeom, vol, uL, uR, fluxL, fluxR));
471863a3b9bcSJacob Faibussowitsch       } else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, f);
47193e9753d6SMatthew G. Knepley     }
47203e9753d6SMatthew G. Knepley     /* Loop over domain */
47213e9753d6SMatthew G. Knepley     if (useFEM) {
47223e9753d6SMatthew G. Knepley       /* Add elemVec to locX */
47233e9753d6SMatthew G. Knepley       for (c = cS; c < cE; ++c) {
47243e9753d6SMatthew G. Knepley         const PetscInt cell = cells ? cells[c] : c;
47253e9753d6SMatthew G. Knepley         const PetscInt cind = c - cStart;
47263e9753d6SMatthew G. Knepley 
47279566063dSJacob Faibussowitsch         if (mesh->printFEM > 1) PetscCall(DMPrintCellVector(cell, name, totDim, &elemVec[cind * totDim]));
47283e9753d6SMatthew G. Knepley         if (ghostLabel) {
47293e9753d6SMatthew G. Knepley           PetscInt ghostVal;
47303e9753d6SMatthew G. Knepley 
47319566063dSJacob Faibussowitsch           PetscCall(DMLabelGetValue(ghostLabel, cell, &ghostVal));
47323e9753d6SMatthew G. Knepley           if (ghostVal > 0) continue;
47333e9753d6SMatthew G. Knepley         }
47349566063dSJacob Faibussowitsch         PetscCall(DMPlexVecSetClosure(dm, section, locF, cell, &elemVec[cind * totDim], ADD_ALL_VALUES));
47353e9753d6SMatthew G. Knepley       }
47363e9753d6SMatthew G. Knepley     }
47373e9753d6SMatthew G. Knepley     if (useFVM) {
47383e9753d6SMatthew G. Knepley       PetscScalar *fa;
47393e9753d6SMatthew G. Knepley       PetscInt     iface;
47403e9753d6SMatthew G. Knepley 
47419566063dSJacob Faibussowitsch       PetscCall(VecGetArray(locF, &fa));
47423e9753d6SMatthew G. Knepley       for (f = 0; f < Nf; ++f) {
47433e9753d6SMatthew G. Knepley         PetscFV      fv;
47443e9753d6SMatthew G. Knepley         PetscObject  obj;
47453e9753d6SMatthew G. Knepley         PetscClassId id;
47463e9753d6SMatthew G. Knepley         PetscInt     foff, pdim;
47473e9753d6SMatthew G. Knepley 
47489566063dSJacob Faibussowitsch         PetscCall(PetscDSGetDiscretization(ds, f, &obj));
47499566063dSJacob Faibussowitsch         PetscCall(PetscDSGetFieldOffset(ds, f, &foff));
47509566063dSJacob Faibussowitsch         PetscCall(PetscObjectGetClassId(obj, &id));
47513e9753d6SMatthew G. Knepley         if (id != PETSCFV_CLASSID) continue;
47523e9753d6SMatthew G. Knepley         fv = (PetscFV)obj;
47539566063dSJacob Faibussowitsch         PetscCall(PetscFVGetNumComponents(fv, &pdim));
47543e9753d6SMatthew G. Knepley         /* Accumulate fluxes to cells */
47553e9753d6SMatthew G. Knepley         for (face = fS, iface = 0; face < fE; ++face) {
47563e9753d6SMatthew G. Knepley           const PetscInt *scells;
47573e9753d6SMatthew G. Knepley           PetscScalar    *fL = NULL, *fR = NULL;
47583e9753d6SMatthew G. Knepley           PetscInt        ghost, d, nsupp, nchild;
47593e9753d6SMatthew G. Knepley 
47609566063dSJacob Faibussowitsch           PetscCall(DMLabelGetValue(ghostLabel, face, &ghost));
47619566063dSJacob Faibussowitsch           PetscCall(DMPlexGetSupportSize(dm, face, &nsupp));
47629566063dSJacob Faibussowitsch           PetscCall(DMPlexGetTreeChildren(dm, face, &nchild, NULL));
47633e9753d6SMatthew G. Knepley           if (ghost >= 0 || nsupp > 2 || nchild > 0) continue;
47649566063dSJacob Faibussowitsch           PetscCall(DMPlexGetSupport(dm, face, &scells));
47659566063dSJacob Faibussowitsch           PetscCall(DMLabelGetValue(ghostLabel, scells[0], &ghost));
47669566063dSJacob Faibussowitsch           if (ghost <= 0) PetscCall(DMPlexPointLocalFieldRef(dm, scells[0], f, fa, &fL));
47679566063dSJacob Faibussowitsch           PetscCall(DMLabelGetValue(ghostLabel, scells[1], &ghost));
47689566063dSJacob Faibussowitsch           if (ghost <= 0) PetscCall(DMPlexPointLocalFieldRef(dm, scells[1], f, fa, &fR));
47693e9753d6SMatthew G. Knepley           for (d = 0; d < pdim; ++d) {
47703e9753d6SMatthew G. Knepley             if (fL) fL[d] -= fluxL[iface * totDim + foff + d];
47713e9753d6SMatthew G. Knepley             if (fR) fR[d] += fluxR[iface * totDim + foff + d];
47723e9753d6SMatthew G. Knepley           }
47733e9753d6SMatthew G. Knepley           ++iface;
47743e9753d6SMatthew G. Knepley         }
47753e9753d6SMatthew G. Knepley       }
47769566063dSJacob Faibussowitsch       PetscCall(VecRestoreArray(locF, &fa));
47773e9753d6SMatthew G. Knepley     }
47783e9753d6SMatthew G. Knepley     /* Handle time derivative */
47793e9753d6SMatthew G. Knepley     if (locX_t) {
47803e9753d6SMatthew G. Knepley       PetscScalar *x_t, *fa;
47813e9753d6SMatthew G. Knepley 
47829566063dSJacob Faibussowitsch       PetscCall(VecGetArray(locF, &fa));
47839566063dSJacob Faibussowitsch       PetscCall(VecGetArray(locX_t, &x_t));
47843e9753d6SMatthew G. Knepley       for (f = 0; f < Nf; ++f) {
47853e9753d6SMatthew G. Knepley         PetscFV      fv;
47863e9753d6SMatthew G. Knepley         PetscObject  obj;
47873e9753d6SMatthew G. Knepley         PetscClassId id;
47883e9753d6SMatthew G. Knepley         PetscInt     pdim, d;
47893e9753d6SMatthew G. Knepley 
47909566063dSJacob Faibussowitsch         PetscCall(PetscDSGetDiscretization(ds, f, &obj));
47919566063dSJacob Faibussowitsch         PetscCall(PetscObjectGetClassId(obj, &id));
47923e9753d6SMatthew G. Knepley         if (id != PETSCFV_CLASSID) continue;
47933e9753d6SMatthew G. Knepley         fv = (PetscFV)obj;
47949566063dSJacob Faibussowitsch         PetscCall(PetscFVGetNumComponents(fv, &pdim));
47953e9753d6SMatthew G. Knepley         for (c = cS; c < cE; ++c) {
47963e9753d6SMatthew G. Knepley           const PetscInt cell = cells ? cells[c] : c;
47973e9753d6SMatthew G. Knepley           PetscScalar   *u_t, *r;
47983e9753d6SMatthew G. Knepley 
47993e9753d6SMatthew G. Knepley           if (ghostLabel) {
48003e9753d6SMatthew G. Knepley             PetscInt ghostVal;
48013e9753d6SMatthew G. Knepley 
48029566063dSJacob Faibussowitsch             PetscCall(DMLabelGetValue(ghostLabel, cell, &ghostVal));
48033e9753d6SMatthew G. Knepley             if (ghostVal > 0) continue;
48043e9753d6SMatthew G. Knepley           }
48059566063dSJacob Faibussowitsch           PetscCall(DMPlexPointLocalFieldRead(dm, cell, f, x_t, &u_t));
48069566063dSJacob Faibussowitsch           PetscCall(DMPlexPointLocalFieldRef(dm, cell, f, fa, &r));
48073e9753d6SMatthew G. Knepley           for (d = 0; d < pdim; ++d) r[d] += u_t[d];
48083e9753d6SMatthew G. Knepley         }
48093e9753d6SMatthew G. Knepley       }
48109566063dSJacob Faibussowitsch       PetscCall(VecRestoreArray(locX_t, &x_t));
48119566063dSJacob Faibussowitsch       PetscCall(VecRestoreArray(locF, &fa));
48123e9753d6SMatthew G. Knepley     }
48133e9753d6SMatthew G. Knepley     if (useFEM) {
48149566063dSJacob Faibussowitsch       PetscCall(DMPlexRestoreCellFields(dm, chunkIS, locX, locX_t, locA, &u, &u_t, &a));
48159566063dSJacob Faibussowitsch       PetscCall(DMRestoreWorkArray(dm, numCells * totDim, MPIU_SCALAR, &elemVec));
48163e9753d6SMatthew G. Knepley     }
48173e9753d6SMatthew G. Knepley     if (useFVM) {
48189566063dSJacob Faibussowitsch       PetscCall(DMPlexRestoreFaceFields(dm, fS, fE, locX, locX_t, faceGeometryFVM, cellGeometryFVM, locGrad, &numFaces, &uL, &uR));
48199566063dSJacob Faibussowitsch       PetscCall(DMPlexRestoreFaceGeometry(dm, fS, fE, faceGeometryFVM, cellGeometryFVM, &numFaces, &fgeom, &vol));
48209566063dSJacob Faibussowitsch       PetscCall(DMRestoreWorkArray(dm, numFaces * totDim, MPIU_SCALAR, &fluxL));
48219566063dSJacob Faibussowitsch       PetscCall(DMRestoreWorkArray(dm, numFaces * totDim, MPIU_SCALAR, &fluxR));
48229566063dSJacob Faibussowitsch       if (dmGrad) PetscCall(DMRestoreLocalVector(dmGrad, &locGrad));
48233e9753d6SMatthew G. Knepley     }
48243e9753d6SMatthew G. Knepley   }
48259566063dSJacob Faibussowitsch   if (useFEM) PetscCall(ISDestroy(&chunkIS));
48269566063dSJacob Faibussowitsch   PetscCall(ISRestorePointRange(cellIS, &cStart, &cEnd, &cells));
48273e9753d6SMatthew G. Knepley 
48283e9753d6SMatthew G. Knepley   if (useFEM) {
48299566063dSJacob Faibussowitsch     PetscCall(DMPlexComputeBdResidual_Internal(dm, locX, locX_t, t, locF, user));
48303e9753d6SMatthew G. Knepley 
48313e9753d6SMatthew G. Knepley     if (maxDegree <= 1) {
48329566063dSJacob Faibussowitsch       PetscCall(DMSNESRestoreFEGeom(coordField, cellIS, affineQuad, PETSC_FALSE, &affineGeom));
48339566063dSJacob Faibussowitsch       PetscCall(PetscQuadratureDestroy(&affineQuad));
48343e9753d6SMatthew G. Knepley     } else {
48353e9753d6SMatthew G. Knepley       for (f = 0; f < Nf; ++f) {
48369566063dSJacob Faibussowitsch         PetscCall(DMSNESRestoreFEGeom(coordField, cellIS, quads[f], PETSC_FALSE, &geoms[f]));
48379566063dSJacob Faibussowitsch         PetscCall(PetscQuadratureDestroy(&quads[f]));
48383e9753d6SMatthew G. Knepley       }
48399566063dSJacob Faibussowitsch       PetscCall(PetscFree2(quads, geoms));
48403e9753d6SMatthew G. Knepley     }
48413e9753d6SMatthew G. Knepley   }
48423e9753d6SMatthew G. Knepley 
48433e9753d6SMatthew G. Knepley   /* FEM */
48443e9753d6SMatthew G. Knepley   /* 1: Get sizes from dm and dmAux */
48453e9753d6SMatthew G. Knepley   /* 2: Get geometric data */
48463e9753d6SMatthew G. Knepley   /* 3: Handle boundary values */
48473e9753d6SMatthew G. Knepley   /* 4: Loop over domain */
48483e9753d6SMatthew G. Knepley   /*   Extract coefficients */
48493e9753d6SMatthew G. Knepley   /* Loop over fields */
48503e9753d6SMatthew G. Knepley   /*   Set tiling for FE*/
48513e9753d6SMatthew G. Knepley   /*   Integrate FE residual to get elemVec */
48523e9753d6SMatthew G. Knepley   /*     Loop over subdomain */
48533e9753d6SMatthew G. Knepley   /*       Loop over quad points */
48543e9753d6SMatthew G. Knepley   /*         Transform coords to real space */
48553e9753d6SMatthew G. Knepley   /*         Evaluate field and aux fields at point */
48563e9753d6SMatthew G. Knepley   /*         Evaluate residual at point */
48573e9753d6SMatthew G. Knepley   /*         Transform residual to real space */
48583e9753d6SMatthew G. Knepley   /*       Add residual to elemVec */
48593e9753d6SMatthew G. Knepley   /* Loop over domain */
48603e9753d6SMatthew G. Knepley   /*   Add elemVec to locX */
48613e9753d6SMatthew G. Knepley 
48623e9753d6SMatthew G. Knepley   /* FVM */
48633e9753d6SMatthew G. Knepley   /* Get geometric data */
48643e9753d6SMatthew G. Knepley   /* If using gradients */
48653e9753d6SMatthew G. Knepley   /*   Compute gradient data */
48663e9753d6SMatthew G. Knepley   /*   Loop over domain faces */
48673e9753d6SMatthew G. Knepley   /*     Count computational faces */
48683e9753d6SMatthew G. Knepley   /*     Reconstruct cell gradient */
48693e9753d6SMatthew G. Knepley   /*   Loop over domain cells */
48703e9753d6SMatthew G. Knepley   /*     Limit cell gradients */
48713e9753d6SMatthew G. Knepley   /* Handle boundary values */
48723e9753d6SMatthew G. Knepley   /* Loop over domain faces */
48733e9753d6SMatthew G. Knepley   /*   Read out field, centroid, normal, volume for each side of face */
48743e9753d6SMatthew G. Knepley   /* Riemann solve over faces */
48753e9753d6SMatthew G. Knepley   /* Loop over domain faces */
48763e9753d6SMatthew G. Knepley   /*   Accumulate fluxes to cells */
48773e9753d6SMatthew G. Knepley   /* TODO Change printFEM to printDisc here */
48783e9753d6SMatthew G. Knepley   if (mesh->printFEM) {
48793e9753d6SMatthew G. Knepley     Vec          locFbc;
48803e9753d6SMatthew G. Knepley     PetscInt     pStart, pEnd, p, maxDof;
48813e9753d6SMatthew G. Knepley     PetscScalar *zeroes;
48823e9753d6SMatthew G. Knepley 
48839566063dSJacob Faibussowitsch     PetscCall(VecDuplicate(locF, &locFbc));
48849566063dSJacob Faibussowitsch     PetscCall(VecCopy(locF, locFbc));
48859566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetChart(section, &pStart, &pEnd));
48869566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetMaxDof(section, &maxDof));
48879566063dSJacob Faibussowitsch     PetscCall(PetscCalloc1(maxDof, &zeroes));
488848a46eb9SPierre Jolivet     for (p = pStart; p < pEnd; p++) PetscCall(VecSetValuesSection(locFbc, section, p, zeroes, INSERT_BC_VALUES));
48899566063dSJacob Faibussowitsch     PetscCall(PetscFree(zeroes));
48909566063dSJacob Faibussowitsch     PetscCall(DMPrintLocalVec(dm, name, mesh->printTol, locFbc));
48919566063dSJacob Faibussowitsch     PetscCall(VecDestroy(&locFbc));
48923e9753d6SMatthew G. Knepley   }
48939566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(DMPLEX_ResidualFEM, dm, 0, 0, 0));
48943ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
48953e9753d6SMatthew G. Knepley }
48963e9753d6SMatthew G. Knepley 
48976528b96dSMatthew G. Knepley /*
48986528b96dSMatthew G. Knepley   1) Allow multiple kernels for BdResidual for hybrid DS
48996528b96dSMatthew G. Knepley 
49006528b96dSMatthew G. Knepley   DONE 2) Get out dsAux for either side at the same time as cohesive cell dsAux
49016528b96dSMatthew G. Knepley 
49026528b96dSMatthew G. Knepley   DONE 3) Change DMGetCellFields() to get different aux data a[] for each side
49036528b96dSMatthew G. Knepley      - I think I just need to replace a[] with the closure from each face
49046528b96dSMatthew G. Knepley 
49056528b96dSMatthew G. Knepley   4) Run both kernels for each non-hybrid field with correct dsAux, and then hybrid field as before
49066528b96dSMatthew G. Knepley */
4907d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeResidual_Hybrid_Internal(DM dm, PetscFormKey key[], IS cellIS, PetscReal time, Vec locX, Vec locX_t, PetscReal t, Vec locF, void *user)
4908d71ae5a4SJacob Faibussowitsch {
49093e9753d6SMatthew G. Knepley   DM_Plex        *mesh       = (DM_Plex *)dm->data;
49103e9753d6SMatthew G. Knepley   const char     *name       = "Hybrid Residual";
491104c51a94SMatthew G. Knepley   DM              dmAux[3]   = {NULL, NULL, NULL};
49123e9753d6SMatthew G. Knepley   DMLabel         ghostLabel = NULL;
49136528b96dSMatthew G. Knepley   PetscDS         ds         = NULL;
49146528b96dSMatthew G. Knepley   PetscDS         dsAux[3]   = {NULL, NULL, NULL};
491504c51a94SMatthew G. Knepley   Vec             locA[3]    = {NULL, NULL, NULL};
4916b2ab40e6SMatthew G. Knepley   PetscScalar    *a[3]       = {NULL, NULL, NULL};
49173e9753d6SMatthew G. Knepley   PetscSection    section    = NULL;
49183e9753d6SMatthew G. Knepley   DMField         coordField = NULL;
4919b2ab40e6SMatthew G. Knepley   PetscScalar    *u          = NULL, *u_t;
49203e9753d6SMatthew G. Knepley   PetscScalar    *elemVec;
49213e9753d6SMatthew G. Knepley   IS              chunkIS;
49223e9753d6SMatthew G. Knepley   const PetscInt *cells;
49233e9753d6SMatthew G. Knepley   PetscInt       *faces;
49243e9753d6SMatthew G. Knepley   PetscInt        cStart, cEnd, numCells;
49256528b96dSMatthew G. Knepley   PetscInt        Nf, f, totDim, totDimAux[3], numChunks, cellChunkSize, chunk;
49263e9753d6SMatthew G. Knepley   PetscInt        maxDegree  = PETSC_MAX_INT;
49273e9753d6SMatthew G. Knepley   PetscQuadrature affineQuad = NULL, *quads = NULL;
49283e9753d6SMatthew G. Knepley   PetscFEGeom    *affineGeom = NULL, **geoms = NULL;
49293e9753d6SMatthew G. Knepley 
49303e9753d6SMatthew G. Knepley   PetscFunctionBegin;
49313ba16761SJacob Faibussowitsch   if (!cellIS) PetscFunctionReturn(PETSC_SUCCESS);
4932437e83fbSMatthew G. Knepley   PetscCall(ISGetPointRange(cellIS, &cStart, &cEnd, &cells));
4933437e83fbSMatthew G. Knepley   PetscCall(ISGetLocalSize(cellIS, &numCells));
49343ba16761SJacob Faibussowitsch   if (cStart >= cEnd) PetscFunctionReturn(PETSC_SUCCESS);
49355fedec97SMatthew G. Knepley   if ((key[0].label == key[1].label) && (key[0].value == key[1].value) && (key[0].part == key[1].part)) {
49365fedec97SMatthew G. Knepley     const char *name;
49379566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetName((PetscObject)key[0].label, &name));
493863a3b9bcSJacob Faibussowitsch     SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Form keys for each side of a cohesive surface must be different (%s, %" PetscInt_FMT ", %" PetscInt_FMT ")", name, key[0].value, key[0].part);
49395fedec97SMatthew G. Knepley   }
49409566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(DMPLEX_ResidualFEM, dm, 0, 0, 0));
49413e9753d6SMatthew G. Knepley   /* TODO The places where we have to use isFE are probably the member functions for the PetscDisc class */
49423e9753d6SMatthew G. Knepley   /* FEM */
49433e9753d6SMatthew G. Knepley   /* 1: Get sizes from dm and dmAux */
49449566063dSJacob Faibussowitsch   PetscCall(DMGetSection(dm, &section));
49459566063dSJacob Faibussowitsch   PetscCall(DMGetLabel(dm, "ghost", &ghostLabel));
49461059d808SMatthew G. Knepley   PetscCall(DMGetCellDS(dm, cells ? cells[cStart] : cStart, &ds));
49479566063dSJacob Faibussowitsch   PetscCall(PetscDSGetNumFields(ds, &Nf));
49489566063dSJacob Faibussowitsch   PetscCall(PetscDSGetTotalDimension(ds, &totDim));
49499566063dSJacob Faibussowitsch   PetscCall(DMGetAuxiliaryVec(dm, key[2].label, key[2].value, key[2].part, &locA[2]));
495004c51a94SMatthew G. Knepley   if (locA[2]) {
49511059d808SMatthew G. Knepley     const PetscInt cellStart = cells ? cells[cStart] : cStart;
49521059d808SMatthew G. Knepley 
49539566063dSJacob Faibussowitsch     PetscCall(VecGetDM(locA[2], &dmAux[2]));
49541059d808SMatthew G. Knepley     PetscCall(DMGetCellDS(dmAux[2], cellStart, &dsAux[2]));
49559566063dSJacob Faibussowitsch     PetscCall(PetscDSGetTotalDimension(dsAux[2], &totDimAux[2]));
49566528b96dSMatthew G. Knepley     {
49576528b96dSMatthew G. Knepley       const PetscInt *cone;
49586528b96dSMatthew G. Knepley       PetscInt        c;
49596528b96dSMatthew G. Knepley 
49601059d808SMatthew G. Knepley       PetscCall(DMPlexGetCone(dm, cellStart, &cone));
49616528b96dSMatthew G. Knepley       for (c = 0; c < 2; ++c) {
49626528b96dSMatthew G. Knepley         const PetscInt *support;
49636528b96dSMatthew G. Knepley         PetscInt        ssize, s;
49646528b96dSMatthew G. Knepley 
49659566063dSJacob Faibussowitsch         PetscCall(DMPlexGetSupport(dm, cone[c], &support));
49669566063dSJacob Faibussowitsch         PetscCall(DMPlexGetSupportSize(dm, cone[c], &ssize));
49671059d808SMatthew G. Knepley         PetscCheck(ssize == 2, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Face %" PetscInt_FMT " from cell %" PetscInt_FMT " has support size %" PetscInt_FMT " != 2", cone[c], cellStart, ssize);
49681059d808SMatthew G. Knepley         if (support[0] == cellStart) s = 1;
49691059d808SMatthew G. Knepley         else if (support[1] == cellStart) s = 0;
49701059d808SMatthew G. Knepley         else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Face %" PetscInt_FMT " does not have cell %" PetscInt_FMT " in its support", cone[c], cellStart);
49719566063dSJacob Faibussowitsch         PetscCall(DMGetAuxiliaryVec(dm, key[c].label, key[c].value, key[c].part, &locA[c]));
4972c75bfeddSPierre Jolivet         PetscCheck(locA[c], PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Must have auxiliary vector for (%p, %" PetscInt_FMT ", %" PetscInt_FMT ")", (void *)key[c].label, key[c].value, key[c].part);
49739566063dSJacob Faibussowitsch         if (locA[c]) PetscCall(VecGetDM(locA[c], &dmAux[c]));
4974ad540459SPierre Jolivet         else dmAux[c] = dmAux[2];
49759566063dSJacob Faibussowitsch         PetscCall(DMGetCellDS(dmAux[c], support[s], &dsAux[c]));
49769566063dSJacob Faibussowitsch         PetscCall(PetscDSGetTotalDimension(dsAux[c], &totDimAux[c]));
49776528b96dSMatthew G. Knepley       }
49786528b96dSMatthew G. Knepley     }
49793e9753d6SMatthew G. Knepley   }
49803e9753d6SMatthew G. Knepley   /* 2: Setup geometric data */
49819566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateField(dm, &coordField));
49829566063dSJacob Faibussowitsch   PetscCall(DMFieldGetDegree(coordField, cellIS, NULL, &maxDegree));
49833e9753d6SMatthew G. Knepley   if (maxDegree > 1) {
49849566063dSJacob Faibussowitsch     PetscCall(PetscCalloc2(Nf, &quads, Nf, &geoms));
49853e9753d6SMatthew G. Knepley     for (f = 0; f < Nf; ++f) {
49863e9753d6SMatthew G. Knepley       PetscFE fe;
49873e9753d6SMatthew G. Knepley 
49889566063dSJacob Faibussowitsch       PetscCall(PetscDSGetDiscretization(ds, f, (PetscObject *)&fe));
49893e9753d6SMatthew G. Knepley       if (fe) {
49909566063dSJacob Faibussowitsch         PetscCall(PetscFEGetQuadrature(fe, &quads[f]));
49919566063dSJacob Faibussowitsch         PetscCall(PetscObjectReference((PetscObject)quads[f]));
49923e9753d6SMatthew G. Knepley       }
49933e9753d6SMatthew G. Knepley     }
49943e9753d6SMatthew G. Knepley   }
49953e9753d6SMatthew G. Knepley   /* Loop over chunks */
49963e9753d6SMatthew G. Knepley   cellChunkSize = numCells;
49973e9753d6SMatthew G. Knepley   numChunks     = !numCells ? 0 : PetscCeilReal(((PetscReal)numCells) / cellChunkSize);
4998a4158a15SMatthew G. Knepley   PetscCall(PetscCalloc1(1 * cellChunkSize, &faces));
4999a4158a15SMatthew G. Knepley   PetscCall(ISCreateGeneral(PETSC_COMM_SELF, 1 * cellChunkSize, faces, PETSC_USE_POINTER, &chunkIS));
50003e9753d6SMatthew G. Knepley   /* Extract field coefficients */
50013e9753d6SMatthew G. Knepley   /* NOTE This needs the end cap faces to have identical orientations */
50029566063dSJacob Faibussowitsch   PetscCall(DMPlexGetCellFields(dm, cellIS, locX, locX_t, locA[2], &u, &u_t, &a[2]));
50039566063dSJacob Faibussowitsch   PetscCall(DMPlexGetHybridAuxFields(dm, dmAux, dsAux, cellIS, locA, a));
50049566063dSJacob Faibussowitsch   PetscCall(DMGetWorkArray(dm, cellChunkSize * totDim, MPIU_SCALAR, &elemVec));
50053e9753d6SMatthew G. Knepley   for (chunk = 0; chunk < numChunks; ++chunk) {
50063e9753d6SMatthew G. Knepley     PetscInt cS = cStart + chunk * cellChunkSize, cE = PetscMin(cS + cellChunkSize, cEnd), numCells = cE - cS, c;
50073e9753d6SMatthew G. Knepley 
50089566063dSJacob Faibussowitsch     PetscCall(PetscMemzero(elemVec, cellChunkSize * totDim * sizeof(PetscScalar)));
50093e9753d6SMatthew G. Knepley     /* Get faces */
50103e9753d6SMatthew G. Knepley     for (c = cS; c < cE; ++c) {
50113e9753d6SMatthew G. Knepley       const PetscInt  cell = cells ? cells[c] : c;
50123e9753d6SMatthew G. Knepley       const PetscInt *cone;
50139566063dSJacob Faibussowitsch       PetscCall(DMPlexGetCone(dm, cell, &cone));
5014a4158a15SMatthew G. Knepley       faces[0 * cellChunkSize + (c - cS)] = cone[0];
5015a4158a15SMatthew G. Knepley       /*faces[1*cellChunkSize+(c-cS)] = cone[1];*/
50163e9753d6SMatthew G. Knepley     }
5017a4158a15SMatthew G. Knepley     PetscCall(ISGeneralSetIndices(chunkIS, 1 * cellChunkSize, faces, PETSC_USE_POINTER));
50183e9753d6SMatthew G. Knepley     /* Get geometric data */
50193e9753d6SMatthew G. Knepley     if (maxDegree <= 1) {
50209566063dSJacob Faibussowitsch       if (!affineQuad) PetscCall(DMFieldCreateDefaultQuadrature(coordField, chunkIS, &affineQuad));
50219566063dSJacob Faibussowitsch       if (affineQuad) PetscCall(DMSNESGetFEGeom(coordField, chunkIS, affineQuad, PETSC_TRUE, &affineGeom));
50223e9753d6SMatthew G. Knepley     } else {
50233e9753d6SMatthew G. Knepley       for (f = 0; f < Nf; ++f) {
50249566063dSJacob Faibussowitsch         if (quads[f]) PetscCall(DMSNESGetFEGeom(coordField, chunkIS, quads[f], PETSC_TRUE, &geoms[f]));
50253e9753d6SMatthew G. Knepley       }
50263e9753d6SMatthew G. Knepley     }
50273e9753d6SMatthew G. Knepley     /* Loop over fields */
50283e9753d6SMatthew G. Knepley     for (f = 0; f < Nf; ++f) {
50293e9753d6SMatthew G. Knepley       PetscFE         fe;
50303e9753d6SMatthew G. Knepley       PetscFEGeom    *geom      = affineGeom ? affineGeom : geoms[f];
5031148442b3SMatthew G. Knepley       PetscFEGeom    *chunkGeom = NULL, *remGeom = NULL;
50323e9753d6SMatthew G. Knepley       PetscQuadrature quad = affineQuad ? affineQuad : quads[f];
50333e9753d6SMatthew G. Knepley       PetscInt        numChunks, numBatches, batchSize, numBlocks, blockSize, Ne, Nr, offset, Nq, Nb;
50345fedec97SMatthew G. Knepley       PetscBool       isCohesiveField;
50353e9753d6SMatthew G. Knepley 
50369566063dSJacob Faibussowitsch       PetscCall(PetscDSGetDiscretization(ds, f, (PetscObject *)&fe));
50373e9753d6SMatthew G. Knepley       if (!fe) continue;
50389566063dSJacob Faibussowitsch       PetscCall(PetscFEGetTileSizes(fe, NULL, &numBlocks, NULL, &numBatches));
50399566063dSJacob Faibussowitsch       PetscCall(PetscQuadratureGetData(quad, NULL, NULL, &Nq, NULL, NULL));
50409566063dSJacob Faibussowitsch       PetscCall(PetscFEGetDimension(fe, &Nb));
50413e9753d6SMatthew G. Knepley       blockSize = Nb;
50423e9753d6SMatthew G. Knepley       batchSize = numBlocks * blockSize;
50439566063dSJacob Faibussowitsch       PetscCall(PetscFESetTileSizes(fe, blockSize, numBlocks, batchSize, numBatches));
50443e9753d6SMatthew G. Knepley       numChunks = numCells / (numBatches * batchSize);
50453e9753d6SMatthew G. Knepley       Ne        = numChunks * numBatches * batchSize;
50463e9753d6SMatthew G. Knepley       Nr        = numCells % (numBatches * batchSize);
50473e9753d6SMatthew G. Knepley       offset    = numCells - Nr;
50489566063dSJacob Faibussowitsch       PetscCall(PetscFEGeomGetChunk(geom, 0, offset, &chunkGeom));
50499566063dSJacob Faibussowitsch       PetscCall(PetscFEGeomGetChunk(geom, offset, numCells, &remGeom));
50509566063dSJacob Faibussowitsch       PetscCall(PetscDSGetCohesive(ds, f, &isCohesiveField));
50515fedec97SMatthew G. Knepley       chunkGeom->isCohesive = remGeom->isCohesive = PETSC_TRUE;
50526528b96dSMatthew G. Knepley       key[0].field                                = f;
50536528b96dSMatthew G. Knepley       key[1].field                                = f;
50545fedec97SMatthew G. Knepley       key[2].field                                = f;
50559566063dSJacob Faibussowitsch       PetscCall(PetscFEIntegrateHybridResidual(ds, key[0], 0, Ne, chunkGeom, u, u_t, dsAux[0], a[0], t, elemVec));
50569566063dSJacob Faibussowitsch       PetscCall(PetscFEIntegrateHybridResidual(ds, key[0], 0, Nr, remGeom, &u[offset * totDim], u_t ? &u_t[offset * totDim] : NULL, dsAux[0], &a[0][offset * totDimAux[0]], t, &elemVec[offset * totDim]));
50579566063dSJacob Faibussowitsch       PetscCall(PetscFEIntegrateHybridResidual(ds, key[1], 1, Ne, chunkGeom, u, u_t, dsAux[1], a[1], t, elemVec));
50589566063dSJacob Faibussowitsch       PetscCall(PetscFEIntegrateHybridResidual(ds, key[1], 1, Nr, remGeom, &u[offset * totDim], u_t ? &u_t[offset * totDim] : NULL, dsAux[1], &a[1][offset * totDimAux[1]], t, &elemVec[offset * totDim]));
50599566063dSJacob Faibussowitsch       PetscCall(PetscFEIntegrateHybridResidual(ds, key[2], 2, Ne, chunkGeom, u, u_t, dsAux[2], a[2], t, elemVec));
50609566063dSJacob Faibussowitsch       PetscCall(PetscFEIntegrateHybridResidual(ds, key[2], 2, Nr, remGeom, &u[offset * totDim], u_t ? &u_t[offset * totDim] : NULL, dsAux[2], &a[2][offset * totDimAux[2]], t, &elemVec[offset * totDim]));
50619566063dSJacob Faibussowitsch       PetscCall(PetscFEGeomRestoreChunk(geom, offset, numCells, &remGeom));
50629566063dSJacob Faibussowitsch       PetscCall(PetscFEGeomRestoreChunk(geom, 0, offset, &chunkGeom));
50633e9753d6SMatthew G. Knepley     }
50643e9753d6SMatthew G. Knepley     /* Add elemVec to locX */
50653e9753d6SMatthew G. Knepley     for (c = cS; c < cE; ++c) {
50663e9753d6SMatthew G. Knepley       const PetscInt cell = cells ? cells[c] : c;
50673e9753d6SMatthew G. Knepley       const PetscInt cind = c - cStart;
50683e9753d6SMatthew G. Knepley 
50699566063dSJacob Faibussowitsch       if (mesh->printFEM > 1) PetscCall(DMPrintCellVector(cell, name, totDim, &elemVec[cind * totDim]));
50703e9753d6SMatthew G. Knepley       if (ghostLabel) {
50713e9753d6SMatthew G. Knepley         PetscInt ghostVal;
50723e9753d6SMatthew G. Knepley 
50739566063dSJacob Faibussowitsch         PetscCall(DMLabelGetValue(ghostLabel, cell, &ghostVal));
50743e9753d6SMatthew G. Knepley         if (ghostVal > 0) continue;
50753e9753d6SMatthew G. Knepley       }
50769566063dSJacob Faibussowitsch       PetscCall(DMPlexVecSetClosure(dm, section, locF, cell, &elemVec[cind * totDim], ADD_ALL_VALUES));
50773e9753d6SMatthew G. Knepley     }
50783e9753d6SMatthew G. Knepley   }
50799566063dSJacob Faibussowitsch   PetscCall(DMPlexRestoreCellFields(dm, cellIS, locX, locX_t, locA[2], &u, &u_t, &a[2]));
50809566063dSJacob Faibussowitsch   PetscCall(DMPlexRestoreHybridAuxFields(dmAux, dsAux, cellIS, locA, a));
50819566063dSJacob Faibussowitsch   PetscCall(DMRestoreWorkArray(dm, numCells * totDim, MPIU_SCALAR, &elemVec));
50829566063dSJacob Faibussowitsch   PetscCall(PetscFree(faces));
50839566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&chunkIS));
50849566063dSJacob Faibussowitsch   PetscCall(ISRestorePointRange(cellIS, &cStart, &cEnd, &cells));
50853e9753d6SMatthew G. Knepley   if (maxDegree <= 1) {
50869566063dSJacob Faibussowitsch     PetscCall(DMSNESRestoreFEGeom(coordField, cellIS, affineQuad, PETSC_FALSE, &affineGeom));
50879566063dSJacob Faibussowitsch     PetscCall(PetscQuadratureDestroy(&affineQuad));
50883e9753d6SMatthew G. Knepley   } else {
50893e9753d6SMatthew G. Knepley     for (f = 0; f < Nf; ++f) {
50909566063dSJacob Faibussowitsch       if (geoms) PetscCall(DMSNESRestoreFEGeom(coordField, cellIS, quads[f], PETSC_FALSE, &geoms[f]));
50919566063dSJacob Faibussowitsch       if (quads) PetscCall(PetscQuadratureDestroy(&quads[f]));
50923e9753d6SMatthew G. Knepley     }
50939566063dSJacob Faibussowitsch     PetscCall(PetscFree2(quads, geoms));
50943e9753d6SMatthew G. Knepley   }
509585cc2951SMatthew G. Knepley   if (mesh->printFEM) {
509685cc2951SMatthew G. Knepley     Vec          locFbc;
509785cc2951SMatthew G. Knepley     PetscInt     pStart, pEnd, p, maxDof;
509885cc2951SMatthew G. Knepley     PetscScalar *zeroes;
509985cc2951SMatthew G. Knepley 
510085cc2951SMatthew G. Knepley     PetscCall(VecDuplicate(locF, &locFbc));
510185cc2951SMatthew G. Knepley     PetscCall(VecCopy(locF, locFbc));
510285cc2951SMatthew G. Knepley     PetscCall(PetscSectionGetChart(section, &pStart, &pEnd));
510385cc2951SMatthew G. Knepley     PetscCall(PetscSectionGetMaxDof(section, &maxDof));
510485cc2951SMatthew G. Knepley     PetscCall(PetscCalloc1(maxDof, &zeroes));
510585cc2951SMatthew G. Knepley     for (p = pStart; p < pEnd; p++) PetscCall(VecSetValuesSection(locFbc, section, p, zeroes, INSERT_BC_VALUES));
510685cc2951SMatthew G. Knepley     PetscCall(PetscFree(zeroes));
510785cc2951SMatthew G. Knepley     PetscCall(DMPrintLocalVec(dm, name, mesh->printTol, locFbc));
510885cc2951SMatthew G. Knepley     PetscCall(VecDestroy(&locFbc));
510985cc2951SMatthew G. Knepley   }
51109566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(DMPLEX_ResidualFEM, dm, 0, 0, 0));
51113ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
51123e9753d6SMatthew G. Knepley }
51133e9753d6SMatthew G. Knepley 
5114d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeBdJacobian_Single_Internal(DM dm, PetscReal t, PetscWeakForm wf, DMLabel label, PetscInt numValues, const PetscInt values[], PetscInt fieldI, Vec locX, Vec locX_t, PetscReal X_tShift, Mat Jac, Mat JacP, DMField coordField, IS facetIS)
5115d71ae5a4SJacob Faibussowitsch {
51163e9753d6SMatthew G. Knepley   DM_Plex        *mesh = (DM_Plex *)dm->data;
51173e9753d6SMatthew G. Knepley   DM              plex = NULL, plexA = NULL, tdm;
51183e9753d6SMatthew G. Knepley   DMEnclosureType encAux;
51193e9753d6SMatthew G. Knepley   PetscDS         prob, probAux       = NULL;
51203e9753d6SMatthew G. Knepley   PetscSection    section, sectionAux = NULL;
5121e432b41dSStefano Zampini   PetscSection    globalSection;
51223e9753d6SMatthew G. Knepley   Vec             locA = NULL, tv;
51233e9753d6SMatthew G. Knepley   PetscScalar    *u = NULL, *u_t = NULL, *a = NULL, *elemMat = NULL;
51243e9753d6SMatthew G. Knepley   PetscInt        v;
51253e9753d6SMatthew G. Knepley   PetscInt        Nf, totDim, totDimAux = 0;
5126e432b41dSStefano Zampini   PetscBool       transform;
51273e9753d6SMatthew G. Knepley 
51283e9753d6SMatthew G. Knepley   PetscFunctionBegin;
51299566063dSJacob Faibussowitsch   PetscCall(DMConvert(dm, DMPLEX, &plex));
51309566063dSJacob Faibussowitsch   PetscCall(DMHasBasisTransform(dm, &transform));
51319566063dSJacob Faibussowitsch   PetscCall(DMGetBasisTransformDM_Internal(dm, &tdm));
51329566063dSJacob Faibussowitsch   PetscCall(DMGetBasisTransformVec_Internal(dm, &tv));
51339566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dm, &section));
51349566063dSJacob Faibussowitsch   PetscCall(DMGetDS(dm, &prob));
51359566063dSJacob Faibussowitsch   PetscCall(PetscDSGetNumFields(prob, &Nf));
51369566063dSJacob Faibussowitsch   PetscCall(PetscDSGetTotalDimension(prob, &totDim));
51379566063dSJacob Faibussowitsch   PetscCall(DMGetAuxiliaryVec(dm, label, values[0], 0, &locA));
51383e9753d6SMatthew G. Knepley   if (locA) {
51393e9753d6SMatthew G. Knepley     DM dmAux;
51403e9753d6SMatthew G. Knepley 
51419566063dSJacob Faibussowitsch     PetscCall(VecGetDM(locA, &dmAux));
51429566063dSJacob Faibussowitsch     PetscCall(DMGetEnclosureRelation(dmAux, dm, &encAux));
51439566063dSJacob Faibussowitsch     PetscCall(DMConvert(dmAux, DMPLEX, &plexA));
51449566063dSJacob Faibussowitsch     PetscCall(DMGetDS(plexA, &probAux));
51459566063dSJacob Faibussowitsch     PetscCall(PetscDSGetTotalDimension(probAux, &totDimAux));
51469566063dSJacob Faibussowitsch     PetscCall(DMGetLocalSection(plexA, &sectionAux));
51473e9753d6SMatthew G. Knepley   }
51483e9753d6SMatthew G. Knepley 
51499566063dSJacob Faibussowitsch   PetscCall(DMGetGlobalSection(dm, &globalSection));
51503e9753d6SMatthew G. Knepley   for (v = 0; v < numValues; ++v) {
51513e9753d6SMatthew G. Knepley     PetscFEGeom    *fgeom;
51523e9753d6SMatthew G. Knepley     PetscInt        maxDegree;
51533e9753d6SMatthew G. Knepley     PetscQuadrature qGeom = NULL;
51543e9753d6SMatthew G. Knepley     IS              pointIS;
51553e9753d6SMatthew G. Knepley     const PetscInt *points;
515606ad1575SMatthew G. Knepley     PetscFormKey    key;
51573e9753d6SMatthew G. Knepley     PetscInt        numFaces, face, Nq;
51583e9753d6SMatthew G. Knepley 
515945480ffeSMatthew G. Knepley     key.label = label;
516045480ffeSMatthew G. Knepley     key.value = values[v];
516106ad1575SMatthew G. Knepley     key.part  = 0;
51629566063dSJacob Faibussowitsch     PetscCall(DMLabelGetStratumIS(label, values[v], &pointIS));
51633e9753d6SMatthew G. Knepley     if (!pointIS) continue; /* No points with that id on this process */
51643e9753d6SMatthew G. Knepley     {
51653e9753d6SMatthew G. Knepley       IS isectIS;
51663e9753d6SMatthew G. Knepley 
51673e9753d6SMatthew G. Knepley       /* TODO: Special cases of ISIntersect where it is quick to check a prior if one is a superset of the other */
51689566063dSJacob Faibussowitsch       PetscCall(ISIntersect_Caching_Internal(facetIS, pointIS, &isectIS));
51699566063dSJacob Faibussowitsch       PetscCall(ISDestroy(&pointIS));
51703e9753d6SMatthew G. Knepley       pointIS = isectIS;
51713e9753d6SMatthew G. Knepley     }
51729566063dSJacob Faibussowitsch     PetscCall(ISGetLocalSize(pointIS, &numFaces));
51739566063dSJacob Faibussowitsch     PetscCall(ISGetIndices(pointIS, &points));
51749566063dSJacob Faibussowitsch     PetscCall(PetscMalloc4(numFaces * totDim, &u, locX_t ? numFaces * totDim : 0, &u_t, numFaces * totDim * totDim, &elemMat, locA ? numFaces * totDimAux : 0, &a));
51759566063dSJacob Faibussowitsch     PetscCall(DMFieldGetDegree(coordField, pointIS, NULL, &maxDegree));
517648a46eb9SPierre Jolivet     if (maxDegree <= 1) PetscCall(DMFieldCreateDefaultQuadrature(coordField, pointIS, &qGeom));
51773e9753d6SMatthew G. Knepley     if (!qGeom) {
51783e9753d6SMatthew G. Knepley       PetscFE fe;
51793e9753d6SMatthew G. Knepley 
51809566063dSJacob Faibussowitsch       PetscCall(PetscDSGetDiscretization(prob, fieldI, (PetscObject *)&fe));
51819566063dSJacob Faibussowitsch       PetscCall(PetscFEGetFaceQuadrature(fe, &qGeom));
51829566063dSJacob Faibussowitsch       PetscCall(PetscObjectReference((PetscObject)qGeom));
51833e9753d6SMatthew G. Knepley     }
51849566063dSJacob Faibussowitsch     PetscCall(PetscQuadratureGetData(qGeom, NULL, NULL, &Nq, NULL, NULL));
51859566063dSJacob Faibussowitsch     PetscCall(DMSNESGetFEGeom(coordField, pointIS, qGeom, PETSC_TRUE, &fgeom));
51863e9753d6SMatthew G. Knepley     for (face = 0; face < numFaces; ++face) {
5187f15274beSMatthew Knepley       const PetscInt point = points[face], *support;
51883e9753d6SMatthew G. Knepley       PetscScalar   *x     = NULL;
5189f15274beSMatthew Knepley       PetscInt       i;
51903e9753d6SMatthew G. Knepley 
51919566063dSJacob Faibussowitsch       PetscCall(DMPlexGetSupport(dm, point, &support));
51929566063dSJacob Faibussowitsch       PetscCall(DMPlexVecGetClosure(plex, section, locX, support[0], NULL, &x));
51933e9753d6SMatthew G. Knepley       for (i = 0; i < totDim; ++i) u[face * totDim + i] = x[i];
51949566063dSJacob Faibussowitsch       PetscCall(DMPlexVecRestoreClosure(plex, section, locX, support[0], NULL, &x));
51953e9753d6SMatthew G. Knepley       if (locX_t) {
51969566063dSJacob Faibussowitsch         PetscCall(DMPlexVecGetClosure(plex, section, locX_t, support[0], NULL, &x));
51973e9753d6SMatthew G. Knepley         for (i = 0; i < totDim; ++i) u_t[face * totDim + i] = x[i];
51989566063dSJacob Faibussowitsch         PetscCall(DMPlexVecRestoreClosure(plex, section, locX_t, support[0], NULL, &x));
51993e9753d6SMatthew G. Knepley       }
52003e9753d6SMatthew G. Knepley       if (locA) {
52013e9753d6SMatthew G. Knepley         PetscInt subp;
52029566063dSJacob Faibussowitsch         PetscCall(DMGetEnclosurePoint(plexA, dm, encAux, support[0], &subp));
52039566063dSJacob Faibussowitsch         PetscCall(DMPlexVecGetClosure(plexA, sectionAux, locA, subp, NULL, &x));
52043e9753d6SMatthew G. Knepley         for (i = 0; i < totDimAux; ++i) a[face * totDimAux + i] = x[i];
52059566063dSJacob Faibussowitsch         PetscCall(DMPlexVecRestoreClosure(plexA, sectionAux, locA, subp, NULL, &x));
52063e9753d6SMatthew G. Knepley       }
52073e9753d6SMatthew G. Knepley     }
52089566063dSJacob Faibussowitsch     PetscCall(PetscArrayzero(elemMat, numFaces * totDim * totDim));
52093e9753d6SMatthew G. Knepley     {
52103e9753d6SMatthew G. Knepley       PetscFE  fe;
52113e9753d6SMatthew G. Knepley       PetscInt Nb;
52123e9753d6SMatthew G. Knepley       /* Conforming batches */
52133e9753d6SMatthew G. Knepley       PetscInt numChunks, numBatches, numBlocks, Ne, blockSize, batchSize;
52143e9753d6SMatthew G. Knepley       /* Remainder */
52153e9753d6SMatthew G. Knepley       PetscFEGeom *chunkGeom = NULL;
52163e9753d6SMatthew G. Knepley       PetscInt     fieldJ, Nr, offset;
52173e9753d6SMatthew G. Knepley 
52189566063dSJacob Faibussowitsch       PetscCall(PetscDSGetDiscretization(prob, fieldI, (PetscObject *)&fe));
52199566063dSJacob Faibussowitsch       PetscCall(PetscFEGetDimension(fe, &Nb));
52209566063dSJacob Faibussowitsch       PetscCall(PetscFEGetTileSizes(fe, NULL, &numBlocks, NULL, &numBatches));
52213e9753d6SMatthew G. Knepley       blockSize = Nb;
52223e9753d6SMatthew G. Knepley       batchSize = numBlocks * blockSize;
52239566063dSJacob Faibussowitsch       PetscCall(PetscFESetTileSizes(fe, blockSize, numBlocks, batchSize, numBatches));
52243e9753d6SMatthew G. Knepley       numChunks = numFaces / (numBatches * batchSize);
52253e9753d6SMatthew G. Knepley       Ne        = numChunks * numBatches * batchSize;
52263e9753d6SMatthew G. Knepley       Nr        = numFaces % (numBatches * batchSize);
52273e9753d6SMatthew G. Knepley       offset    = numFaces - Nr;
52289566063dSJacob Faibussowitsch       PetscCall(PetscFEGeomGetChunk(fgeom, 0, offset, &chunkGeom));
52293e9753d6SMatthew G. Knepley       for (fieldJ = 0; fieldJ < Nf; ++fieldJ) {
523045480ffeSMatthew G. Knepley         key.field = fieldI * Nf + fieldJ;
52319566063dSJacob Faibussowitsch         PetscCall(PetscFEIntegrateBdJacobian(prob, wf, key, Ne, chunkGeom, u, u_t, probAux, a, t, X_tShift, elemMat));
52323e9753d6SMatthew G. Knepley       }
52339566063dSJacob Faibussowitsch       PetscCall(PetscFEGeomGetChunk(fgeom, offset, numFaces, &chunkGeom));
52343e9753d6SMatthew G. Knepley       for (fieldJ = 0; fieldJ < Nf; ++fieldJ) {
523545480ffeSMatthew G. Knepley         key.field = fieldI * Nf + fieldJ;
52369566063dSJacob Faibussowitsch         PetscCall(PetscFEIntegrateBdJacobian(prob, wf, key, Nr, chunkGeom, &u[offset * totDim], u_t ? &u_t[offset * totDim] : NULL, probAux, a ? &a[offset * totDimAux] : NULL, t, X_tShift, &elemMat[offset * totDim * totDim]));
52373e9753d6SMatthew G. Knepley       }
52389566063dSJacob Faibussowitsch       PetscCall(PetscFEGeomRestoreChunk(fgeom, offset, numFaces, &chunkGeom));
52393e9753d6SMatthew G. Knepley     }
52403e9753d6SMatthew G. Knepley     for (face = 0; face < numFaces; ++face) {
52413e9753d6SMatthew G. Knepley       const PetscInt point = points[face], *support;
52423e9753d6SMatthew G. Knepley 
52433e9753d6SMatthew G. Knepley       /* Transform to global basis before insertion in Jacobian */
52449566063dSJacob Faibussowitsch       PetscCall(DMPlexGetSupport(plex, point, &support));
52459566063dSJacob Faibussowitsch       if (transform) PetscCall(DMPlexBasisTransformPointTensor_Internal(dm, tdm, tv, support[0], PETSC_TRUE, totDim, &elemMat[face * totDim * totDim]));
52469566063dSJacob Faibussowitsch       if (mesh->printFEM > 1) PetscCall(DMPrintCellMatrix(point, "BdJacobian", totDim, totDim, &elemMat[face * totDim * totDim]));
52479566063dSJacob Faibussowitsch       PetscCall(DMPlexMatSetClosure(plex, section, globalSection, JacP, support[0], &elemMat[face * totDim * totDim], ADD_VALUES));
52483e9753d6SMatthew G. Knepley     }
52499566063dSJacob Faibussowitsch     PetscCall(DMSNESRestoreFEGeom(coordField, pointIS, qGeom, PETSC_TRUE, &fgeom));
52509566063dSJacob Faibussowitsch     PetscCall(PetscQuadratureDestroy(&qGeom));
52519566063dSJacob Faibussowitsch     PetscCall(ISRestoreIndices(pointIS, &points));
52529566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&pointIS));
52539566063dSJacob Faibussowitsch     PetscCall(PetscFree4(u, u_t, elemMat, a));
52543e9753d6SMatthew G. Knepley   }
52559566063dSJacob Faibussowitsch   if (plex) PetscCall(DMDestroy(&plex));
52569566063dSJacob Faibussowitsch   if (plexA) PetscCall(DMDestroy(&plexA));
52573ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
52583e9753d6SMatthew G. Knepley }
52593e9753d6SMatthew G. Knepley 
5260d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeBdJacobianSingle(DM dm, PetscReal t, PetscWeakForm wf, DMLabel label, PetscInt numValues, const PetscInt values[], PetscInt field, Vec locX, Vec locX_t, PetscReal X_tShift, Mat Jac, Mat JacP)
5261d71ae5a4SJacob Faibussowitsch {
52623e9753d6SMatthew G. Knepley   DMField  coordField;
52633e9753d6SMatthew G. Knepley   DMLabel  depthLabel;
52643e9753d6SMatthew G. Knepley   IS       facetIS;
52653e9753d6SMatthew G. Knepley   PetscInt dim;
52663e9753d6SMatthew G. Knepley 
52673e9753d6SMatthew G. Knepley   PetscFunctionBegin;
52689566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dm, &dim));
52699566063dSJacob Faibussowitsch   PetscCall(DMPlexGetDepthLabel(dm, &depthLabel));
52709566063dSJacob Faibussowitsch   PetscCall(DMLabelGetStratumIS(depthLabel, dim - 1, &facetIS));
52719566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateField(dm, &coordField));
52729566063dSJacob Faibussowitsch   PetscCall(DMPlexComputeBdJacobian_Single_Internal(dm, t, wf, label, numValues, values, field, locX, locX_t, X_tShift, Jac, JacP, coordField, facetIS));
52739566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&facetIS));
52743ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
52753e9753d6SMatthew G. Knepley }
52763e9753d6SMatthew G. Knepley 
5277d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeBdJacobian_Internal(DM dm, Vec locX, Vec locX_t, PetscReal t, PetscReal X_tShift, Mat Jac, Mat JacP, void *user)
5278d71ae5a4SJacob Faibussowitsch {
52793e9753d6SMatthew G. Knepley   PetscDS  prob;
52803e9753d6SMatthew G. Knepley   PetscInt dim, numBd, bd;
52813e9753d6SMatthew G. Knepley   DMLabel  depthLabel;
52823e9753d6SMatthew G. Knepley   DMField  coordField = NULL;
52833e9753d6SMatthew G. Knepley   IS       facetIS;
52843e9753d6SMatthew G. Knepley 
52853e9753d6SMatthew G. Knepley   PetscFunctionBegin;
52869566063dSJacob Faibussowitsch   PetscCall(DMGetDS(dm, &prob));
52879566063dSJacob Faibussowitsch   PetscCall(DMPlexGetDepthLabel(dm, &depthLabel));
52889566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dm, &dim));
52899566063dSJacob Faibussowitsch   PetscCall(DMLabelGetStratumIS(depthLabel, dim - 1, &facetIS));
52909566063dSJacob Faibussowitsch   PetscCall(PetscDSGetNumBoundary(prob, &numBd));
52919566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateField(dm, &coordField));
52923e9753d6SMatthew G. Knepley   for (bd = 0; bd < numBd; ++bd) {
529345480ffeSMatthew G. Knepley     PetscWeakForm           wf;
52943e9753d6SMatthew G. Knepley     DMBoundaryConditionType type;
52953e9753d6SMatthew G. Knepley     DMLabel                 label;
52963e9753d6SMatthew G. Knepley     const PetscInt         *values;
52973e9753d6SMatthew G. Knepley     PetscInt                fieldI, numValues;
52983e9753d6SMatthew G. Knepley     PetscObject             obj;
52993e9753d6SMatthew G. Knepley     PetscClassId            id;
53003e9753d6SMatthew G. Knepley 
53019566063dSJacob Faibussowitsch     PetscCall(PetscDSGetBoundary(prob, bd, &wf, &type, NULL, &label, &numValues, &values, &fieldI, NULL, NULL, NULL, NULL, NULL));
53023d3e5d66SMatthew G. Knepley     if (type & DM_BC_ESSENTIAL) continue;
53039566063dSJacob Faibussowitsch     PetscCall(PetscDSGetDiscretization(prob, fieldI, &obj));
53049566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetClassId(obj, &id));
53053d3e5d66SMatthew G. Knepley     if (id != PETSCFE_CLASSID) continue;
53069566063dSJacob Faibussowitsch     PetscCall(DMPlexComputeBdJacobian_Single_Internal(dm, t, wf, label, numValues, values, fieldI, locX, locX_t, X_tShift, Jac, JacP, coordField, facetIS));
53073e9753d6SMatthew G. Knepley   }
53089566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&facetIS));
53093ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
53103e9753d6SMatthew G. Knepley }
53113e9753d6SMatthew G. Knepley 
5312d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeJacobian_Internal(DM dm, PetscFormKey key, IS cellIS, PetscReal t, PetscReal X_tShift, Vec X, Vec X_t, Mat Jac, Mat JacP, void *user)
5313d71ae5a4SJacob Faibussowitsch {
53143e9753d6SMatthew G. Knepley   DM_Plex        *mesh  = (DM_Plex *)dm->data;
53153e9753d6SMatthew G. Knepley   const char     *name  = "Jacobian";
53169a2a23afSMatthew G. Knepley   DM              dmAux = NULL, plex, tdm;
53173e9753d6SMatthew G. Knepley   DMEnclosureType encAux;
53183e9753d6SMatthew G. Knepley   Vec             A, tv;
53193e9753d6SMatthew G. Knepley   DMField         coordField;
53203e9753d6SMatthew G. Knepley   PetscDS         prob, probAux = NULL;
5321e432b41dSStefano Zampini   PetscSection    section, globalSection, sectionAux;
53223e9753d6SMatthew G. Knepley   PetscScalar    *elemMat, *elemMatP, *elemMatD, *u, *u_t, *a = NULL;
53233e9753d6SMatthew G. Knepley   const PetscInt *cells;
53243e9753d6SMatthew G. Knepley   PetscInt        Nf, fieldI, fieldJ;
532528351e22SJed Brown   PetscInt        totDim, totDimAux = 0, cStart, cEnd, numCells, c;
5326e04ae0b4SMatthew G. Knepley   PetscBool       hasJac = PETSC_FALSE, hasPrec = PETSC_FALSE, hasDyn, hasFV = PETSC_FALSE, transform;
53273e9753d6SMatthew G. Knepley 
53283e9753d6SMatthew G. Knepley   PetscFunctionBegin;
5329e04ae0b4SMatthew G. Knepley   if (!cellIS) goto end;
53309566063dSJacob Faibussowitsch   PetscCall(ISGetPointRange(cellIS, &cStart, &cEnd, &cells));
5331437e83fbSMatthew G. Knepley   PetscCall(ISGetLocalSize(cellIS, &numCells));
5332437e83fbSMatthew G. Knepley   if (cStart >= cEnd) goto end;
5333437e83fbSMatthew G. Knepley   PetscCall(PetscLogEventBegin(DMPLEX_JacobianFEM, dm, 0, 0, 0));
53349566063dSJacob Faibussowitsch   PetscCall(DMHasBasisTransform(dm, &transform));
53359566063dSJacob Faibussowitsch   PetscCall(DMGetBasisTransformDM_Internal(dm, &tdm));
53369566063dSJacob Faibussowitsch   PetscCall(DMGetBasisTransformVec_Internal(dm, &tv));
53379566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dm, &section));
53389566063dSJacob Faibussowitsch   PetscCall(DMGetGlobalSection(dm, &globalSection));
53399566063dSJacob Faibussowitsch   PetscCall(DMGetCellDS(dm, cells ? cells[cStart] : cStart, &prob));
53409566063dSJacob Faibussowitsch   PetscCall(PetscDSGetNumFields(prob, &Nf));
53419566063dSJacob Faibussowitsch   PetscCall(PetscDSGetTotalDimension(prob, &totDim));
53429566063dSJacob Faibussowitsch   PetscCall(PetscDSHasJacobian(prob, &hasJac));
53439566063dSJacob Faibussowitsch   PetscCall(PetscDSHasJacobianPreconditioner(prob, &hasPrec));
53443e9753d6SMatthew G. Knepley   /* user passed in the same matrix, avoid double contributions and
53453e9753d6SMatthew G. Knepley      only assemble the Jacobian */
53463e9753d6SMatthew G. Knepley   if (hasJac && Jac == JacP) hasPrec = PETSC_FALSE;
53479566063dSJacob Faibussowitsch   PetscCall(PetscDSHasDynamicJacobian(prob, &hasDyn));
53483e9753d6SMatthew G. Knepley   hasDyn = hasDyn && (X_tShift != 0.0) ? PETSC_TRUE : PETSC_FALSE;
53499566063dSJacob Faibussowitsch   PetscCall(DMGetAuxiliaryVec(dm, key.label, key.value, key.part, &A));
53509a2a23afSMatthew G. Knepley   if (A) {
53519566063dSJacob Faibussowitsch     PetscCall(VecGetDM(A, &dmAux));
53529566063dSJacob Faibussowitsch     PetscCall(DMGetEnclosureRelation(dmAux, dm, &encAux));
53539566063dSJacob Faibussowitsch     PetscCall(DMConvert(dmAux, DMPLEX, &plex));
53549566063dSJacob Faibussowitsch     PetscCall(DMGetLocalSection(plex, &sectionAux));
53559566063dSJacob Faibussowitsch     PetscCall(DMGetDS(dmAux, &probAux));
53569566063dSJacob Faibussowitsch     PetscCall(PetscDSGetTotalDimension(probAux, &totDimAux));
53573e9753d6SMatthew G. Knepley   }
53589566063dSJacob Faibussowitsch   PetscCall(PetscMalloc5(numCells * totDim, &u, X_t ? numCells * totDim : 0, &u_t, hasJac ? numCells * totDim * totDim : 0, &elemMat, hasPrec ? numCells * totDim * totDim : 0, &elemMatP, hasDyn ? numCells * totDim * totDim : 0, &elemMatD));
53599566063dSJacob Faibussowitsch   if (dmAux) PetscCall(PetscMalloc1(numCells * totDimAux, &a));
53609566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateField(dm, &coordField));
53613e9753d6SMatthew G. Knepley   for (c = cStart; c < cEnd; ++c) {
53623e9753d6SMatthew G. Knepley     const PetscInt cell = cells ? cells[c] : c;
53633e9753d6SMatthew G. Knepley     const PetscInt cind = c - cStart;
53643e9753d6SMatthew G. Knepley     PetscScalar   *x = NULL, *x_t = NULL;
53653e9753d6SMatthew G. Knepley     PetscInt       i;
53663e9753d6SMatthew G. Knepley 
53679566063dSJacob Faibussowitsch     PetscCall(DMPlexVecGetClosure(dm, section, X, cell, NULL, &x));
53683e9753d6SMatthew G. Knepley     for (i = 0; i < totDim; ++i) u[cind * totDim + i] = x[i];
53699566063dSJacob Faibussowitsch     PetscCall(DMPlexVecRestoreClosure(dm, section, X, cell, NULL, &x));
53703e9753d6SMatthew G. Knepley     if (X_t) {
53719566063dSJacob Faibussowitsch       PetscCall(DMPlexVecGetClosure(dm, section, X_t, cell, NULL, &x_t));
53723e9753d6SMatthew G. Knepley       for (i = 0; i < totDim; ++i) u_t[cind * totDim + i] = x_t[i];
53739566063dSJacob Faibussowitsch       PetscCall(DMPlexVecRestoreClosure(dm, section, X_t, cell, NULL, &x_t));
53743e9753d6SMatthew G. Knepley     }
53753e9753d6SMatthew G. Knepley     if (dmAux) {
53763e9753d6SMatthew G. Knepley       PetscInt subcell;
53779566063dSJacob Faibussowitsch       PetscCall(DMGetEnclosurePoint(dmAux, dm, encAux, cell, &subcell));
53789566063dSJacob Faibussowitsch       PetscCall(DMPlexVecGetClosure(plex, sectionAux, A, subcell, NULL, &x));
53793e9753d6SMatthew G. Knepley       for (i = 0; i < totDimAux; ++i) a[cind * totDimAux + i] = x[i];
53809566063dSJacob Faibussowitsch       PetscCall(DMPlexVecRestoreClosure(plex, sectionAux, A, subcell, NULL, &x));
53813e9753d6SMatthew G. Knepley     }
53823e9753d6SMatthew G. Knepley   }
53839566063dSJacob Faibussowitsch   if (hasJac) PetscCall(PetscArrayzero(elemMat, numCells * totDim * totDim));
53849566063dSJacob Faibussowitsch   if (hasPrec) PetscCall(PetscArrayzero(elemMatP, numCells * totDim * totDim));
53859566063dSJacob Faibussowitsch   if (hasDyn) PetscCall(PetscArrayzero(elemMatD, numCells * totDim * totDim));
53863e9753d6SMatthew G. Knepley   for (fieldI = 0; fieldI < Nf; ++fieldI) {
53873e9753d6SMatthew G. Knepley     PetscClassId    id;
53883e9753d6SMatthew G. Knepley     PetscFE         fe;
53893e9753d6SMatthew G. Knepley     PetscQuadrature qGeom = NULL;
53903e9753d6SMatthew G. Knepley     PetscInt        Nb;
53913e9753d6SMatthew G. Knepley     /* Conforming batches */
53923e9753d6SMatthew G. Knepley     PetscInt numChunks, numBatches, numBlocks, Ne, blockSize, batchSize;
53933e9753d6SMatthew G. Knepley     /* Remainder */
53943e9753d6SMatthew G. Knepley     PetscInt     Nr, offset, Nq;
53953e9753d6SMatthew G. Knepley     PetscInt     maxDegree;
53963e9753d6SMatthew G. Knepley     PetscFEGeom *cgeomFEM, *chunkGeom = NULL, *remGeom = NULL;
53973e9753d6SMatthew G. Knepley 
53989566063dSJacob Faibussowitsch     PetscCall(PetscDSGetDiscretization(prob, fieldI, (PetscObject *)&fe));
53999566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetClassId((PetscObject)fe, &id));
54009371c9d4SSatish Balay     if (id == PETSCFV_CLASSID) {
54019371c9d4SSatish Balay       hasFV = PETSC_TRUE;
54029371c9d4SSatish Balay       continue;
54039371c9d4SSatish Balay     }
54049566063dSJacob Faibussowitsch     PetscCall(PetscFEGetDimension(fe, &Nb));
54059566063dSJacob Faibussowitsch     PetscCall(PetscFEGetTileSizes(fe, NULL, &numBlocks, NULL, &numBatches));
54069566063dSJacob Faibussowitsch     PetscCall(DMFieldGetDegree(coordField, cellIS, NULL, &maxDegree));
540748a46eb9SPierre Jolivet     if (maxDegree <= 1) PetscCall(DMFieldCreateDefaultQuadrature(coordField, cellIS, &qGeom));
54083e9753d6SMatthew G. Knepley     if (!qGeom) {
54099566063dSJacob Faibussowitsch       PetscCall(PetscFEGetQuadrature(fe, &qGeom));
54109566063dSJacob Faibussowitsch       PetscCall(PetscObjectReference((PetscObject)qGeom));
54113e9753d6SMatthew G. Knepley     }
54129566063dSJacob Faibussowitsch     PetscCall(PetscQuadratureGetData(qGeom, NULL, NULL, &Nq, NULL, NULL));
54139566063dSJacob Faibussowitsch     PetscCall(DMSNESGetFEGeom(coordField, cellIS, qGeom, PETSC_FALSE, &cgeomFEM));
54143e9753d6SMatthew G. Knepley     blockSize = Nb;
54153e9753d6SMatthew G. Knepley     batchSize = numBlocks * blockSize;
54169566063dSJacob Faibussowitsch     PetscCall(PetscFESetTileSizes(fe, blockSize, numBlocks, batchSize, numBatches));
54173e9753d6SMatthew G. Knepley     numChunks = numCells / (numBatches * batchSize);
54183e9753d6SMatthew G. Knepley     Ne        = numChunks * numBatches * batchSize;
54193e9753d6SMatthew G. Knepley     Nr        = numCells % (numBatches * batchSize);
54203e9753d6SMatthew G. Knepley     offset    = numCells - Nr;
54219566063dSJacob Faibussowitsch     PetscCall(PetscFEGeomGetChunk(cgeomFEM, 0, offset, &chunkGeom));
54229566063dSJacob Faibussowitsch     PetscCall(PetscFEGeomGetChunk(cgeomFEM, offset, numCells, &remGeom));
54233e9753d6SMatthew G. Knepley     for (fieldJ = 0; fieldJ < Nf; ++fieldJ) {
54246528b96dSMatthew G. Knepley       key.field = fieldI * Nf + fieldJ;
54253e9753d6SMatthew G. Knepley       if (hasJac) {
54269566063dSJacob Faibussowitsch         PetscCall(PetscFEIntegrateJacobian(prob, PETSCFE_JACOBIAN, key, Ne, chunkGeom, u, u_t, probAux, a, t, X_tShift, elemMat));
54279566063dSJacob Faibussowitsch         PetscCall(PetscFEIntegrateJacobian(prob, PETSCFE_JACOBIAN, key, Nr, remGeom, &u[offset * totDim], u_t ? &u_t[offset * totDim] : NULL, probAux, &a[offset * totDimAux], t, X_tShift, &elemMat[offset * totDim * totDim]));
54283e9753d6SMatthew G. Knepley       }
54293e9753d6SMatthew G. Knepley       if (hasPrec) {
54309566063dSJacob Faibussowitsch         PetscCall(PetscFEIntegrateJacobian(prob, PETSCFE_JACOBIAN_PRE, key, Ne, chunkGeom, u, u_t, probAux, a, t, X_tShift, elemMatP));
54319566063dSJacob Faibussowitsch         PetscCall(PetscFEIntegrateJacobian(prob, PETSCFE_JACOBIAN_PRE, key, Nr, remGeom, &u[offset * totDim], u_t ? &u_t[offset * totDim] : NULL, probAux, &a[offset * totDimAux], t, X_tShift, &elemMatP[offset * totDim * totDim]));
54323e9753d6SMatthew G. Knepley       }
54333e9753d6SMatthew G. Knepley       if (hasDyn) {
54349566063dSJacob Faibussowitsch         PetscCall(PetscFEIntegrateJacobian(prob, PETSCFE_JACOBIAN_DYN, key, Ne, chunkGeom, u, u_t, probAux, a, t, X_tShift, elemMatD));
54359566063dSJacob Faibussowitsch         PetscCall(PetscFEIntegrateJacobian(prob, PETSCFE_JACOBIAN_DYN, key, Nr, remGeom, &u[offset * totDim], u_t ? &u_t[offset * totDim] : NULL, probAux, &a[offset * totDimAux], t, X_tShift, &elemMatD[offset * totDim * totDim]));
54363e9753d6SMatthew G. Knepley       }
54373e9753d6SMatthew G. Knepley     }
54389566063dSJacob Faibussowitsch     PetscCall(PetscFEGeomRestoreChunk(cgeomFEM, offset, numCells, &remGeom));
54399566063dSJacob Faibussowitsch     PetscCall(PetscFEGeomRestoreChunk(cgeomFEM, 0, offset, &chunkGeom));
54409566063dSJacob Faibussowitsch     PetscCall(DMSNESRestoreFEGeom(coordField, cellIS, qGeom, PETSC_FALSE, &cgeomFEM));
54419566063dSJacob Faibussowitsch     PetscCall(PetscQuadratureDestroy(&qGeom));
54423e9753d6SMatthew G. Knepley   }
54433e9753d6SMatthew G. Knepley   /*   Add contribution from X_t */
54449371c9d4SSatish Balay   if (hasDyn) {
54459371c9d4SSatish Balay     for (c = 0; c < numCells * totDim * totDim; ++c) elemMat[c] += X_tShift * elemMatD[c];
54469371c9d4SSatish Balay   }
54473e9753d6SMatthew G. Knepley   if (hasFV) {
54483e9753d6SMatthew G. Knepley     PetscClassId id;
54493e9753d6SMatthew G. Knepley     PetscFV      fv;
54503e9753d6SMatthew G. Knepley     PetscInt     offsetI, NcI, NbI = 1, fc, f;
54513e9753d6SMatthew G. Knepley 
54523e9753d6SMatthew G. Knepley     for (fieldI = 0; fieldI < Nf; ++fieldI) {
54539566063dSJacob Faibussowitsch       PetscCall(PetscDSGetDiscretization(prob, fieldI, (PetscObject *)&fv));
54549566063dSJacob Faibussowitsch       PetscCall(PetscDSGetFieldOffset(prob, fieldI, &offsetI));
54559566063dSJacob Faibussowitsch       PetscCall(PetscObjectGetClassId((PetscObject)fv, &id));
54563e9753d6SMatthew G. Knepley       if (id != PETSCFV_CLASSID) continue;
54573e9753d6SMatthew G. Knepley       /* Put in the identity */
54589566063dSJacob Faibussowitsch       PetscCall(PetscFVGetNumComponents(fv, &NcI));
54593e9753d6SMatthew G. Knepley       for (c = cStart; c < cEnd; ++c) {
54603e9753d6SMatthew G. Knepley         const PetscInt cind    = c - cStart;
54613e9753d6SMatthew G. Knepley         const PetscInt eOffset = cind * totDim * totDim;
54623e9753d6SMatthew G. Knepley         for (fc = 0; fc < NcI; ++fc) {
54633e9753d6SMatthew G. Knepley           for (f = 0; f < NbI; ++f) {
54643e9753d6SMatthew G. Knepley             const PetscInt i = offsetI + f * NcI + fc;
54653e9753d6SMatthew G. Knepley             if (hasPrec) {
5466ad540459SPierre Jolivet               if (hasJac) elemMat[eOffset + i * totDim + i] = 1.0;
54673e9753d6SMatthew G. Knepley               elemMatP[eOffset + i * totDim + i] = 1.0;
54689371c9d4SSatish Balay             } else {
54699371c9d4SSatish Balay               elemMat[eOffset + i * totDim + i] = 1.0;
54709371c9d4SSatish Balay             }
54713e9753d6SMatthew G. Knepley           }
54723e9753d6SMatthew G. Knepley         }
54733e9753d6SMatthew G. Knepley       }
54743e9753d6SMatthew G. Knepley     }
54753e9753d6SMatthew G. Knepley     /* No allocated space for FV stuff, so ignore the zero entries */
54769566063dSJacob Faibussowitsch     PetscCall(MatSetOption(JacP, MAT_IGNORE_ZERO_ENTRIES, PETSC_TRUE));
54773e9753d6SMatthew G. Knepley   }
54783e9753d6SMatthew G. Knepley   /* Insert values into matrix */
54793e9753d6SMatthew G. Knepley   for (c = cStart; c < cEnd; ++c) {
54803e9753d6SMatthew G. Knepley     const PetscInt cell = cells ? cells[c] : c;
54813e9753d6SMatthew G. Knepley     const PetscInt cind = c - cStart;
54823e9753d6SMatthew G. Knepley 
54833e9753d6SMatthew G. Knepley     /* Transform to global basis before insertion in Jacobian */
54849566063dSJacob Faibussowitsch     if (transform) PetscCall(DMPlexBasisTransformPointTensor_Internal(dm, tdm, tv, cell, PETSC_TRUE, totDim, &elemMat[cind * totDim * totDim]));
54853e9753d6SMatthew G. Knepley     if (hasPrec) {
54863e9753d6SMatthew G. Knepley       if (hasJac) {
54879566063dSJacob Faibussowitsch         if (mesh->printFEM > 1) PetscCall(DMPrintCellMatrix(cell, name, totDim, totDim, &elemMat[cind * totDim * totDim]));
54889566063dSJacob Faibussowitsch         PetscCall(DMPlexMatSetClosure(dm, section, globalSection, Jac, cell, &elemMat[cind * totDim * totDim], ADD_VALUES));
54893e9753d6SMatthew G. Knepley       }
54909566063dSJacob Faibussowitsch       if (mesh->printFEM > 1) PetscCall(DMPrintCellMatrix(cell, name, totDim, totDim, &elemMatP[cind * totDim * totDim]));
54919566063dSJacob Faibussowitsch       PetscCall(DMPlexMatSetClosure(dm, section, globalSection, JacP, cell, &elemMatP[cind * totDim * totDim], ADD_VALUES));
54923e9753d6SMatthew G. Knepley     } else {
54933e9753d6SMatthew G. Knepley       if (hasJac) {
54949566063dSJacob Faibussowitsch         if (mesh->printFEM > 1) PetscCall(DMPrintCellMatrix(cell, name, totDim, totDim, &elemMat[cind * totDim * totDim]));
54959566063dSJacob Faibussowitsch         PetscCall(DMPlexMatSetClosure(dm, section, globalSection, JacP, cell, &elemMat[cind * totDim * totDim], ADD_VALUES));
54963e9753d6SMatthew G. Knepley       }
54973e9753d6SMatthew G. Knepley     }
54983e9753d6SMatthew G. Knepley   }
54999566063dSJacob Faibussowitsch   PetscCall(ISRestorePointRange(cellIS, &cStart, &cEnd, &cells));
55009566063dSJacob Faibussowitsch   if (hasFV) PetscCall(MatSetOption(JacP, MAT_IGNORE_ZERO_ENTRIES, PETSC_FALSE));
55019566063dSJacob Faibussowitsch   PetscCall(PetscFree5(u, u_t, elemMat, elemMatP, elemMatD));
55023e9753d6SMatthew G. Knepley   if (dmAux) {
55039566063dSJacob Faibussowitsch     PetscCall(PetscFree(a));
55049566063dSJacob Faibussowitsch     PetscCall(DMDestroy(&plex));
55053e9753d6SMatthew G. Knepley   }
55063e9753d6SMatthew G. Knepley   /* Compute boundary integrals */
55079566063dSJacob Faibussowitsch   PetscCall(DMPlexComputeBdJacobian_Internal(dm, X, X_t, t, X_tShift, Jac, JacP, user));
55083e9753d6SMatthew G. Knepley   /* Assemble matrix */
55099371c9d4SSatish Balay end : {
5510e04ae0b4SMatthew G. Knepley   PetscBool assOp = hasJac && hasPrec ? PETSC_TRUE : PETSC_FALSE, gassOp;
5511e04ae0b4SMatthew G. Knepley 
5512e04ae0b4SMatthew G. Knepley   PetscCallMPI(MPI_Allreduce(&assOp, &gassOp, 1, MPIU_BOOL, MPI_LOR, PetscObjectComm((PetscObject)dm)));
55133e9753d6SMatthew G. Knepley   if (hasJac && hasPrec) {
55149566063dSJacob Faibussowitsch     PetscCall(MatAssemblyBegin(Jac, MAT_FINAL_ASSEMBLY));
55159566063dSJacob Faibussowitsch     PetscCall(MatAssemblyEnd(Jac, MAT_FINAL_ASSEMBLY));
55163e9753d6SMatthew G. Knepley   }
5517e04ae0b4SMatthew G. Knepley }
55189566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(JacP, MAT_FINAL_ASSEMBLY));
55199566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(JacP, MAT_FINAL_ASSEMBLY));
55209566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(DMPLEX_JacobianFEM, dm, 0, 0, 0));
55213ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
55223e9753d6SMatthew G. Knepley }
55233e9753d6SMatthew G. Knepley 
5524d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeJacobian_Hybrid_Internal(DM dm, PetscFormKey key[], IS cellIS, PetscReal t, PetscReal X_tShift, Vec locX, Vec locX_t, Mat Jac, Mat JacP, void *user)
5525d71ae5a4SJacob Faibussowitsch {
55263e9753d6SMatthew G. Knepley   DM_Plex        *mesh          = (DM_Plex *)dm->data;
55273e9753d6SMatthew G. Knepley   const char     *name          = "Hybrid Jacobian";
5528148442b3SMatthew G. Knepley   DM              dmAux[3]      = {NULL, NULL, NULL};
5529148442b3SMatthew G. Knepley   DMLabel         ghostLabel    = NULL;
55303e9753d6SMatthew G. Knepley   DM              plex          = NULL;
55313e9753d6SMatthew G. Knepley   DM              plexA         = NULL;
5532148442b3SMatthew G. Knepley   PetscDS         ds            = NULL;
5533148442b3SMatthew G. Knepley   PetscDS         dsAux[3]      = {NULL, NULL, NULL};
5534148442b3SMatthew G. Knepley   Vec             locA[3]       = {NULL, NULL, NULL};
55353e9753d6SMatthew G. Knepley   PetscSection    section       = NULL;
5536148442b3SMatthew G. Knepley   PetscSection    sectionAux[3] = {NULL, NULL, NULL};
55373e9753d6SMatthew G. Knepley   DMField         coordField    = NULL;
5538148442b3SMatthew G. Knepley   PetscScalar    *u             = NULL, *u_t, *a[3];
55393e9753d6SMatthew G. Knepley   PetscScalar    *elemMat, *elemMatP;
5540e432b41dSStefano Zampini   PetscSection    globalSection;
55413e9753d6SMatthew G. Knepley   IS              chunkIS;
55423e9753d6SMatthew G. Knepley   const PetscInt *cells;
55433e9753d6SMatthew G. Knepley   PetscInt       *faces;
55443e9753d6SMatthew G. Knepley   PetscInt        cStart, cEnd, numCells;
5545148442b3SMatthew G. Knepley   PetscInt        Nf, fieldI, fieldJ, totDim, totDimAux[3], numChunks, cellChunkSize, chunk;
55463e9753d6SMatthew G. Knepley   PetscInt        maxDegree  = PETSC_MAX_INT;
55473e9753d6SMatthew G. Knepley   PetscQuadrature affineQuad = NULL, *quads = NULL;
55483e9753d6SMatthew G. Knepley   PetscFEGeom    *affineGeom = NULL, **geoms = NULL;
5549e432b41dSStefano Zampini   PetscBool       hasBdJac, hasBdPrec;
55503e9753d6SMatthew G. Knepley 
55513e9753d6SMatthew G. Knepley   PetscFunctionBegin;
55523ba16761SJacob Faibussowitsch   if (!cellIS) PetscFunctionReturn(PETSC_SUCCESS);
5553437e83fbSMatthew G. Knepley   PetscCall(ISGetPointRange(cellIS, &cStart, &cEnd, &cells));
5554437e83fbSMatthew G. Knepley   PetscCall(ISGetLocalSize(cellIS, &numCells));
55553ba16761SJacob Faibussowitsch   if (cStart >= cEnd) PetscFunctionReturn(PETSC_SUCCESS);
55565fedec97SMatthew G. Knepley   if ((key[0].label == key[1].label) && (key[0].value == key[1].value) && (key[0].part == key[1].part)) {
55575fedec97SMatthew G. Knepley     const char *name;
55589566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetName((PetscObject)key[0].label, &name));
555963a3b9bcSJacob Faibussowitsch     SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Form keys for each side of a cohesive surface must be different (%s, %" PetscInt_FMT ", %" PetscInt_FMT ")", name, key[0].value, key[0].part);
55605fedec97SMatthew G. Knepley   }
55619566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(DMPLEX_JacobianFEM, dm, 0, 0, 0));
55629566063dSJacob Faibussowitsch   PetscCall(DMConvert(dm, DMPLEX, &plex));
55639566063dSJacob Faibussowitsch   PetscCall(DMGetSection(dm, &section));
55649566063dSJacob Faibussowitsch   PetscCall(DMGetGlobalSection(dm, &globalSection));
55659566063dSJacob Faibussowitsch   PetscCall(DMGetLabel(dm, "ghost", &ghostLabel));
55661059d808SMatthew G. Knepley   PetscCall(DMGetCellDS(dm, cells ? cells[cStart] : cStart, &ds));
55679566063dSJacob Faibussowitsch   PetscCall(PetscDSGetNumFields(ds, &Nf));
55689566063dSJacob Faibussowitsch   PetscCall(PetscDSGetTotalDimension(ds, &totDim));
55699566063dSJacob Faibussowitsch   PetscCall(PetscDSHasBdJacobian(ds, &hasBdJac));
55709566063dSJacob Faibussowitsch   PetscCall(PetscDSHasBdJacobianPreconditioner(ds, &hasBdPrec));
55719566063dSJacob Faibussowitsch   PetscCall(DMGetAuxiliaryVec(dm, key[2].label, key[2].value, key[2].part, &locA[2]));
5572148442b3SMatthew G. Knepley   if (locA[2]) {
55731059d808SMatthew G. Knepley     const PetscInt cellStart = cells ? cells[cStart] : cStart;
55741059d808SMatthew G. Knepley 
55759566063dSJacob Faibussowitsch     PetscCall(VecGetDM(locA[2], &dmAux[2]));
55769566063dSJacob Faibussowitsch     PetscCall(DMConvert(dmAux[2], DMPLEX, &plexA));
55779566063dSJacob Faibussowitsch     PetscCall(DMGetSection(dmAux[2], &sectionAux[2]));
55781059d808SMatthew G. Knepley     PetscCall(DMGetCellDS(dmAux[2], cellStart, &dsAux[2]));
55799566063dSJacob Faibussowitsch     PetscCall(PetscDSGetTotalDimension(dsAux[2], &totDimAux[2]));
5580148442b3SMatthew G. Knepley     {
5581148442b3SMatthew G. Knepley       const PetscInt *cone;
5582148442b3SMatthew G. Knepley       PetscInt        c;
5583148442b3SMatthew G. Knepley 
55841059d808SMatthew G. Knepley       PetscCall(DMPlexGetCone(dm, cellStart, &cone));
5585148442b3SMatthew G. Knepley       for (c = 0; c < 2; ++c) {
5586148442b3SMatthew G. Knepley         const PetscInt *support;
5587148442b3SMatthew G. Knepley         PetscInt        ssize, s;
5588148442b3SMatthew G. Knepley 
55899566063dSJacob Faibussowitsch         PetscCall(DMPlexGetSupport(dm, cone[c], &support));
55909566063dSJacob Faibussowitsch         PetscCall(DMPlexGetSupportSize(dm, cone[c], &ssize));
55911059d808SMatthew G. Knepley         PetscCheck(ssize == 2, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Face %" PetscInt_FMT " from cell %" PetscInt_FMT " has support size %" PetscInt_FMT " != 2", cone[c], cellStart, ssize);
55921059d808SMatthew G. Knepley         if (support[0] == cellStart) s = 1;
55931059d808SMatthew G. Knepley         else if (support[1] == cellStart) s = 0;
55941059d808SMatthew G. Knepley         else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Face %" PetscInt_FMT " does not have cell %" PetscInt_FMT " in its support", cone[c], cellStart);
55959566063dSJacob Faibussowitsch         PetscCall(DMGetAuxiliaryVec(dm, key[c].label, key[c].value, key[c].part, &locA[c]));
55969566063dSJacob Faibussowitsch         if (locA[c]) PetscCall(VecGetDM(locA[c], &dmAux[c]));
5597ad540459SPierre Jolivet         else dmAux[c] = dmAux[2];
55989566063dSJacob Faibussowitsch         PetscCall(DMGetCellDS(dmAux[c], support[s], &dsAux[c]));
55999566063dSJacob Faibussowitsch         PetscCall(PetscDSGetTotalDimension(dsAux[c], &totDimAux[c]));
5600148442b3SMatthew G. Knepley       }
5601148442b3SMatthew G. Knepley     }
56023e9753d6SMatthew G. Knepley   }
56039566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateField(dm, &coordField));
56049566063dSJacob Faibussowitsch   PetscCall(DMFieldGetDegree(coordField, cellIS, NULL, &maxDegree));
56053e9753d6SMatthew G. Knepley   if (maxDegree > 1) {
56063e9753d6SMatthew G. Knepley     PetscInt f;
56079566063dSJacob Faibussowitsch     PetscCall(PetscCalloc2(Nf, &quads, Nf, &geoms));
56083e9753d6SMatthew G. Knepley     for (f = 0; f < Nf; ++f) {
56093e9753d6SMatthew G. Knepley       PetscFE fe;
56103e9753d6SMatthew G. Knepley 
56119566063dSJacob Faibussowitsch       PetscCall(PetscDSGetDiscretization(ds, f, (PetscObject *)&fe));
56123e9753d6SMatthew G. Knepley       if (fe) {
56139566063dSJacob Faibussowitsch         PetscCall(PetscFEGetQuadrature(fe, &quads[f]));
56149566063dSJacob Faibussowitsch         PetscCall(PetscObjectReference((PetscObject)quads[f]));
56153e9753d6SMatthew G. Knepley       }
56163e9753d6SMatthew G. Knepley     }
56173e9753d6SMatthew G. Knepley   }
56183e9753d6SMatthew G. Knepley   cellChunkSize = numCells;
56193e9753d6SMatthew G. Knepley   numChunks     = !numCells ? 0 : PetscCeilReal(((PetscReal)numCells) / cellChunkSize);
5620a4158a15SMatthew G. Knepley   PetscCall(PetscCalloc1(1 * cellChunkSize, &faces));
5621a4158a15SMatthew G. Knepley   PetscCall(ISCreateGeneral(PETSC_COMM_SELF, 1 * cellChunkSize, faces, PETSC_USE_POINTER, &chunkIS));
56229566063dSJacob Faibussowitsch   PetscCall(DMPlexGetCellFields(dm, cellIS, locX, locX_t, locA[2], &u, &u_t, &a[2]));
56239566063dSJacob Faibussowitsch   PetscCall(DMPlexGetHybridAuxFields(dm, dmAux, dsAux, cellIS, locA, a));
56249566063dSJacob Faibussowitsch   PetscCall(DMGetWorkArray(dm, hasBdJac ? cellChunkSize * totDim * totDim : 0, MPIU_SCALAR, &elemMat));
56259566063dSJacob Faibussowitsch   PetscCall(DMGetWorkArray(dm, hasBdPrec ? cellChunkSize * totDim * totDim : 0, MPIU_SCALAR, &elemMatP));
56263e9753d6SMatthew G. Knepley   for (chunk = 0; chunk < numChunks; ++chunk) {
56273e9753d6SMatthew G. Knepley     PetscInt cS = cStart + chunk * cellChunkSize, cE = PetscMin(cS + cellChunkSize, cEnd), numCells = cE - cS, c;
56283e9753d6SMatthew G. Knepley 
56299566063dSJacob Faibussowitsch     if (hasBdJac) PetscCall(PetscMemzero(elemMat, numCells * totDim * totDim * sizeof(PetscScalar)));
56309566063dSJacob Faibussowitsch     if (hasBdPrec) PetscCall(PetscMemzero(elemMatP, numCells * totDim * totDim * sizeof(PetscScalar)));
56313e9753d6SMatthew G. Knepley     /* Get faces */
56323e9753d6SMatthew G. Knepley     for (c = cS; c < cE; ++c) {
56333e9753d6SMatthew G. Knepley       const PetscInt  cell = cells ? cells[c] : c;
56343e9753d6SMatthew G. Knepley       const PetscInt *cone;
56359566063dSJacob Faibussowitsch       PetscCall(DMPlexGetCone(plex, cell, &cone));
5636a4158a15SMatthew G. Knepley       faces[0 * cellChunkSize + (c - cS)] = cone[0];
5637a4158a15SMatthew G. Knepley       /*faces[2*cellChunkSize+(c-cS)] = cone[1];*/
56383e9753d6SMatthew G. Knepley     }
5639a4158a15SMatthew G. Knepley     PetscCall(ISGeneralSetIndices(chunkIS, 1 * cellChunkSize, faces, PETSC_USE_POINTER));
56403e9753d6SMatthew G. Knepley     if (maxDegree <= 1) {
56419566063dSJacob Faibussowitsch       if (!affineQuad) PetscCall(DMFieldCreateDefaultQuadrature(coordField, chunkIS, &affineQuad));
56429566063dSJacob Faibussowitsch       if (affineQuad) PetscCall(DMSNESGetFEGeom(coordField, chunkIS, affineQuad, PETSC_TRUE, &affineGeom));
56433e9753d6SMatthew G. Knepley     } else {
56443e9753d6SMatthew G. Knepley       PetscInt f;
56453e9753d6SMatthew G. Knepley       for (f = 0; f < Nf; ++f) {
56469566063dSJacob Faibussowitsch         if (quads[f]) PetscCall(DMSNESGetFEGeom(coordField, chunkIS, quads[f], PETSC_TRUE, &geoms[f]));
56473e9753d6SMatthew G. Knepley       }
56483e9753d6SMatthew G. Knepley     }
56493e9753d6SMatthew G. Knepley 
56503e9753d6SMatthew G. Knepley     for (fieldI = 0; fieldI < Nf; ++fieldI) {
56513e9753d6SMatthew G. Knepley       PetscFE         feI;
56523e9753d6SMatthew G. Knepley       PetscFEGeom    *geom      = affineGeom ? affineGeom : geoms[fieldI];
56533e9753d6SMatthew G. Knepley       PetscFEGeom    *chunkGeom = NULL, *remGeom = NULL;
56543e9753d6SMatthew G. Knepley       PetscQuadrature quad = affineQuad ? affineQuad : quads[fieldI];
56553e9753d6SMatthew G. Knepley       PetscInt        numChunks, numBatches, batchSize, numBlocks, blockSize, Ne, Nr, offset, Nq, Nb;
56565fedec97SMatthew G. Knepley       PetscBool       isCohesiveField;
56573e9753d6SMatthew G. Knepley 
56589566063dSJacob Faibussowitsch       PetscCall(PetscDSGetDiscretization(ds, fieldI, (PetscObject *)&feI));
56593e9753d6SMatthew G. Knepley       if (!feI) continue;
56609566063dSJacob Faibussowitsch       PetscCall(PetscFEGetTileSizes(feI, NULL, &numBlocks, NULL, &numBatches));
56619566063dSJacob Faibussowitsch       PetscCall(PetscQuadratureGetData(quad, NULL, NULL, &Nq, NULL, NULL));
56629566063dSJacob Faibussowitsch       PetscCall(PetscFEGetDimension(feI, &Nb));
56633e9753d6SMatthew G. Knepley       blockSize = Nb;
56643e9753d6SMatthew G. Knepley       batchSize = numBlocks * blockSize;
56659566063dSJacob Faibussowitsch       PetscCall(PetscFESetTileSizes(feI, blockSize, numBlocks, batchSize, numBatches));
56663e9753d6SMatthew G. Knepley       numChunks = numCells / (numBatches * batchSize);
56673e9753d6SMatthew G. Knepley       Ne        = numChunks * numBatches * batchSize;
56683e9753d6SMatthew G. Knepley       Nr        = numCells % (numBatches * batchSize);
56693e9753d6SMatthew G. Knepley       offset    = numCells - Nr;
56709566063dSJacob Faibussowitsch       PetscCall(PetscFEGeomGetChunk(geom, 0, offset, &chunkGeom));
56719566063dSJacob Faibussowitsch       PetscCall(PetscFEGeomGetChunk(geom, offset, numCells, &remGeom));
56729566063dSJacob Faibussowitsch       PetscCall(PetscDSGetCohesive(ds, fieldI, &isCohesiveField));
56733e9753d6SMatthew G. Knepley       for (fieldJ = 0; fieldJ < Nf; ++fieldJ) {
56743e9753d6SMatthew G. Knepley         PetscFE feJ;
56753e9753d6SMatthew G. Knepley 
56769566063dSJacob Faibussowitsch         PetscCall(PetscDSGetDiscretization(ds, fieldJ, (PetscObject *)&feJ));
56773e9753d6SMatthew G. Knepley         if (!feJ) continue;
5678148442b3SMatthew G. Knepley         key[0].field = fieldI * Nf + fieldJ;
5679148442b3SMatthew G. Knepley         key[1].field = fieldI * Nf + fieldJ;
56805fedec97SMatthew G. Knepley         key[2].field = fieldI * Nf + fieldJ;
5681148442b3SMatthew G. Knepley         if (hasBdJac) {
56829566063dSJacob Faibussowitsch           PetscCall(PetscFEIntegrateHybridJacobian(ds, PETSCFE_JACOBIAN, key[0], 0, Ne, chunkGeom, u, u_t, dsAux[0], a[0], t, X_tShift, elemMat));
56839566063dSJacob Faibussowitsch           PetscCall(PetscFEIntegrateHybridJacobian(ds, PETSCFE_JACOBIAN, key[0], 0, Nr, remGeom, &u[offset * totDim], u_t ? &u_t[offset * totDim] : NULL, dsAux[0], &a[0][offset * totDimAux[0]], t, X_tShift, &elemMat[offset * totDim * totDim]));
56849566063dSJacob Faibussowitsch           PetscCall(PetscFEIntegrateHybridJacobian(ds, PETSCFE_JACOBIAN, key[1], 1, Ne, chunkGeom, u, u_t, dsAux[1], a[1], t, X_tShift, elemMat));
56859566063dSJacob Faibussowitsch           PetscCall(PetscFEIntegrateHybridJacobian(ds, PETSCFE_JACOBIAN, key[1], 1, Nr, remGeom, &u[offset * totDim], u_t ? &u_t[offset * totDim] : NULL, dsAux[1], &a[1][offset * totDimAux[1]], t, X_tShift, &elemMat[offset * totDim * totDim]));
5686148442b3SMatthew G. Knepley         }
5687148442b3SMatthew G. Knepley         if (hasBdPrec) {
56889566063dSJacob Faibussowitsch           PetscCall(PetscFEIntegrateHybridJacobian(ds, PETSCFE_JACOBIAN_PRE, key[0], 0, Ne, chunkGeom, u, u_t, dsAux[0], a[0], t, X_tShift, elemMatP));
56899566063dSJacob Faibussowitsch           PetscCall(PetscFEIntegrateHybridJacobian(ds, PETSCFE_JACOBIAN_PRE, key[0], 0, Nr, remGeom, &u[offset * totDim], u_t ? &u_t[offset * totDim] : NULL, dsAux[0], &a[0][offset * totDimAux[0]], t, X_tShift, &elemMatP[offset * totDim * totDim]));
56909566063dSJacob Faibussowitsch           PetscCall(PetscFEIntegrateHybridJacobian(ds, PETSCFE_JACOBIAN_PRE, key[1], 1, Ne, chunkGeom, u, u_t, dsAux[1], a[1], t, X_tShift, elemMatP));
56919566063dSJacob Faibussowitsch           PetscCall(PetscFEIntegrateHybridJacobian(ds, PETSCFE_JACOBIAN_PRE, key[1], 1, Nr, remGeom, &u[offset * totDim], u_t ? &u_t[offset * totDim] : NULL, dsAux[1], &a[1][offset * totDimAux[1]], t, X_tShift, &elemMatP[offset * totDim * totDim]));
5692148442b3SMatthew G. Knepley         }
56935fedec97SMatthew G. Knepley         if (hasBdJac) {
56949566063dSJacob Faibussowitsch           PetscCall(PetscFEIntegrateHybridJacobian(ds, PETSCFE_JACOBIAN, key[2], 2, Ne, chunkGeom, u, u_t, dsAux[2], a[2], t, X_tShift, elemMat));
56959566063dSJacob Faibussowitsch           PetscCall(PetscFEIntegrateHybridJacobian(ds, PETSCFE_JACOBIAN, key[2], 2, Nr, remGeom, &u[offset * totDim], u_t ? &u_t[offset * totDim] : NULL, dsAux[2], &a[2][offset * totDimAux[2]], t, X_tShift, &elemMat[offset * totDim * totDim]));
5696148442b3SMatthew G. Knepley         }
56975fedec97SMatthew G. Knepley         if (hasBdPrec) {
56989566063dSJacob Faibussowitsch           PetscCall(PetscFEIntegrateHybridJacobian(ds, PETSCFE_JACOBIAN_PRE, key[2], 2, Ne, chunkGeom, u, u_t, dsAux[2], a[2], t, X_tShift, elemMatP));
56999566063dSJacob Faibussowitsch           PetscCall(PetscFEIntegrateHybridJacobian(ds, PETSCFE_JACOBIAN_PRE, key[2], 2, Nr, remGeom, &u[offset * totDim], u_t ? &u_t[offset * totDim] : NULL, dsAux[2], &a[2][offset * totDimAux[2]], t, X_tShift, &elemMatP[offset * totDim * totDim]));
57003e9753d6SMatthew G. Knepley         }
57013e9753d6SMatthew G. Knepley       }
57029566063dSJacob Faibussowitsch       PetscCall(PetscFEGeomRestoreChunk(geom, offset, numCells, &remGeom));
57039566063dSJacob Faibussowitsch       PetscCall(PetscFEGeomRestoreChunk(geom, 0, offset, &chunkGeom));
57043e9753d6SMatthew G. Knepley     }
57053e9753d6SMatthew G. Knepley     /* Insert values into matrix */
57063e9753d6SMatthew G. Knepley     for (c = cS; c < cE; ++c) {
57073e9753d6SMatthew G. Knepley       const PetscInt cell = cells ? cells[c] : c;
57083e9753d6SMatthew G. Knepley       const PetscInt cind = c - cS;
57093e9753d6SMatthew G. Knepley 
57103e9753d6SMatthew G. Knepley       if (hasBdPrec) {
57113e9753d6SMatthew G. Knepley         if (hasBdJac) {
57129566063dSJacob Faibussowitsch           if (mesh->printFEM > 1) PetscCall(DMPrintCellMatrix(cell, name, totDim, totDim, &elemMat[cind * totDim * totDim]));
57139566063dSJacob Faibussowitsch           PetscCall(DMPlexMatSetClosure(plex, section, globalSection, Jac, cell, &elemMat[cind * totDim * totDim], ADD_VALUES));
57143e9753d6SMatthew G. Knepley         }
57159566063dSJacob Faibussowitsch         if (mesh->printFEM > 1) PetscCall(DMPrintCellMatrix(cell, name, totDim, totDim, &elemMatP[cind * totDim * totDim]));
57169566063dSJacob Faibussowitsch         PetscCall(DMPlexMatSetClosure(plex, section, globalSection, JacP, cell, &elemMatP[cind * totDim * totDim], ADD_VALUES));
57173e9753d6SMatthew G. Knepley       } else if (hasBdJac) {
57189566063dSJacob Faibussowitsch         if (mesh->printFEM > 1) PetscCall(DMPrintCellMatrix(cell, name, totDim, totDim, &elemMat[cind * totDim * totDim]));
57199566063dSJacob Faibussowitsch         PetscCall(DMPlexMatSetClosure(plex, section, globalSection, JacP, cell, &elemMat[cind * totDim * totDim], ADD_VALUES));
57203e9753d6SMatthew G. Knepley       }
57213e9753d6SMatthew G. Knepley     }
57223e9753d6SMatthew G. Knepley   }
57239566063dSJacob Faibussowitsch   PetscCall(DMPlexRestoreCellFields(dm, cellIS, locX, locX_t, locA[2], &u, &u_t, &a[2]));
57249566063dSJacob Faibussowitsch   PetscCall(DMPlexRestoreHybridAuxFields(dmAux, dsAux, cellIS, locA, a));
57259566063dSJacob Faibussowitsch   PetscCall(DMRestoreWorkArray(dm, hasBdJac ? cellChunkSize * totDim * totDim : 0, MPIU_SCALAR, &elemMat));
57269566063dSJacob Faibussowitsch   PetscCall(DMRestoreWorkArray(dm, hasBdPrec ? cellChunkSize * totDim * totDim : 0, MPIU_SCALAR, &elemMatP));
57279566063dSJacob Faibussowitsch   PetscCall(PetscFree(faces));
57289566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&chunkIS));
57299566063dSJacob Faibussowitsch   PetscCall(ISRestorePointRange(cellIS, &cStart, &cEnd, &cells));
57303e9753d6SMatthew G. Knepley   if (maxDegree <= 1) {
57319566063dSJacob Faibussowitsch     PetscCall(DMSNESRestoreFEGeom(coordField, cellIS, affineQuad, PETSC_FALSE, &affineGeom));
57329566063dSJacob Faibussowitsch     PetscCall(PetscQuadratureDestroy(&affineQuad));
57333e9753d6SMatthew G. Knepley   } else {
57343e9753d6SMatthew G. Knepley     PetscInt f;
57353e9753d6SMatthew G. Knepley     for (f = 0; f < Nf; ++f) {
57369566063dSJacob Faibussowitsch       if (geoms) PetscCall(DMSNESRestoreFEGeom(coordField, cellIS, quads[f], PETSC_FALSE, &geoms[f]));
57379566063dSJacob Faibussowitsch       if (quads) PetscCall(PetscQuadratureDestroy(&quads[f]));
57383e9753d6SMatthew G. Knepley     }
57399566063dSJacob Faibussowitsch     PetscCall(PetscFree2(quads, geoms));
57403e9753d6SMatthew G. Knepley   }
57419566063dSJacob Faibussowitsch   if (dmAux[2]) PetscCall(DMDestroy(&plexA));
57429566063dSJacob Faibussowitsch   PetscCall(DMDestroy(&plex));
57439566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(DMPLEX_JacobianFEM, dm, 0, 0, 0));
57443ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
57453e9753d6SMatthew G. Knepley }
57468e3a2eefSMatthew G. Knepley 
57478e3a2eefSMatthew G. Knepley /*
57488e3a2eefSMatthew G. Knepley   DMPlexComputeJacobian_Action_Internal - Form the local portion of the Jacobian action Z = J(X) Y at the local solution X using pointwise functions specified by the user.
57498e3a2eefSMatthew G. Knepley 
57508e3a2eefSMatthew G. Knepley   Input Parameters:
57518e3a2eefSMatthew G. Knepley + dm     - The mesh
57528e3a2eefSMatthew G. Knepley . key    - The PetscWeakFormKey indcating where integration should happen
575306ad1575SMatthew G. Knepley . cellIS - The cells to integrate over
57548e3a2eefSMatthew G. Knepley . t      - The time
57558e3a2eefSMatthew G. Knepley . X_tShift - The multiplier for the Jacobian with repsect to X_t
57568e3a2eefSMatthew G. Knepley . X      - Local solution vector
57578e3a2eefSMatthew G. Knepley . X_t    - Time-derivative of the local solution vector
57588e3a2eefSMatthew G. Knepley . Y      - Local input vector
575906ad1575SMatthew G. Knepley - user   - the user context
57608e3a2eefSMatthew G. Knepley 
57618e3a2eefSMatthew G. Knepley   Output Parameter:
57628e3a2eefSMatthew G. Knepley . Z - Local output vector
57638e3a2eefSMatthew G. Knepley 
57648e3a2eefSMatthew G. Knepley   Note:
57658e3a2eefSMatthew G. Knepley   We form the residual one batch of elements at a time. This allows us to offload work onto an accelerator,
57668e3a2eefSMatthew G. Knepley   like a GPU, or vectorize on a multicore machine.
57678e3a2eefSMatthew G. Knepley */
5768d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeJacobian_Action_Internal(DM dm, PetscFormKey key, IS cellIS, PetscReal t, PetscReal X_tShift, Vec X, Vec X_t, Vec Y, Vec Z, void *user)
5769d71ae5a4SJacob Faibussowitsch {
57708e3a2eefSMatthew G. Knepley   DM_Plex        *mesh  = (DM_Plex *)dm->data;
57718e3a2eefSMatthew G. Knepley   const char     *name  = "Jacobian";
57728e3a2eefSMatthew G. Knepley   DM              dmAux = NULL, plex, plexAux = NULL;
57738e3a2eefSMatthew G. Knepley   DMEnclosureType encAux;
57748e3a2eefSMatthew G. Knepley   Vec             A;
57758e3a2eefSMatthew G. Knepley   DMField         coordField;
57768e3a2eefSMatthew G. Knepley   PetscDS         prob, probAux = NULL;
57778e3a2eefSMatthew G. Knepley   PetscQuadrature quad;
57788e3a2eefSMatthew G. Knepley   PetscSection    section, globalSection, sectionAux;
57798e3a2eefSMatthew G. Knepley   PetscScalar    *elemMat, *elemMatD, *u, *u_t, *a = NULL, *y, *z;
57808e3a2eefSMatthew G. Knepley   const PetscInt *cells;
57818e3a2eefSMatthew G. Knepley   PetscInt        Nf, fieldI, fieldJ;
57828e3a2eefSMatthew G. Knepley   PetscInt        totDim, totDimAux = 0, cStart, cEnd, numCells, c;
57838e3a2eefSMatthew G. Knepley   PetscBool       hasDyn;
57848e3a2eefSMatthew G. Knepley 
57858e3a2eefSMatthew G. Knepley   PetscFunctionBegin;
57869566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(DMPLEX_JacobianFEM, dm, 0, 0, 0));
57879566063dSJacob Faibussowitsch   PetscCall(DMConvert(dm, DMPLEX, &plex));
57888e3a2eefSMatthew G. Knepley   if (!cellIS) {
57898e3a2eefSMatthew G. Knepley     PetscInt depth;
57908e3a2eefSMatthew G. Knepley 
57919566063dSJacob Faibussowitsch     PetscCall(DMPlexGetDepth(plex, &depth));
57929566063dSJacob Faibussowitsch     PetscCall(DMGetStratumIS(plex, "dim", depth, &cellIS));
57939566063dSJacob Faibussowitsch     if (!cellIS) PetscCall(DMGetStratumIS(plex, "depth", depth, &cellIS));
57948e3a2eefSMatthew G. Knepley   } else {
57959566063dSJacob Faibussowitsch     PetscCall(PetscObjectReference((PetscObject)cellIS));
57968e3a2eefSMatthew G. Knepley   }
57979566063dSJacob Faibussowitsch   PetscCall(ISGetLocalSize(cellIS, &numCells));
57989566063dSJacob Faibussowitsch   PetscCall(ISGetPointRange(cellIS, &cStart, &cEnd, &cells));
57999566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dm, &section));
58009566063dSJacob Faibussowitsch   PetscCall(DMGetGlobalSection(dm, &globalSection));
58019566063dSJacob Faibussowitsch   PetscCall(DMGetCellDS(dm, cells ? cells[cStart] : cStart, &prob));
58029566063dSJacob Faibussowitsch   PetscCall(PetscDSGetNumFields(prob, &Nf));
58039566063dSJacob Faibussowitsch   PetscCall(PetscDSGetTotalDimension(prob, &totDim));
58049566063dSJacob Faibussowitsch   PetscCall(PetscDSHasDynamicJacobian(prob, &hasDyn));
58058e3a2eefSMatthew G. Knepley   hasDyn = hasDyn && (X_tShift != 0.0) ? PETSC_TRUE : PETSC_FALSE;
58069566063dSJacob Faibussowitsch   PetscCall(DMGetAuxiliaryVec(dm, key.label, key.value, key.part, &A));
58078e3a2eefSMatthew G. Knepley   if (A) {
58089566063dSJacob Faibussowitsch     PetscCall(VecGetDM(A, &dmAux));
58099566063dSJacob Faibussowitsch     PetscCall(DMGetEnclosureRelation(dmAux, dm, &encAux));
58109566063dSJacob Faibussowitsch     PetscCall(DMConvert(dmAux, DMPLEX, &plexAux));
58119566063dSJacob Faibussowitsch     PetscCall(DMGetLocalSection(plexAux, &sectionAux));
58129566063dSJacob Faibussowitsch     PetscCall(DMGetDS(dmAux, &probAux));
58139566063dSJacob Faibussowitsch     PetscCall(PetscDSGetTotalDimension(probAux, &totDimAux));
58148e3a2eefSMatthew G. Knepley   }
58159566063dSJacob Faibussowitsch   PetscCall(VecSet(Z, 0.0));
58169566063dSJacob Faibussowitsch   PetscCall(PetscMalloc6(numCells * totDim, &u, X_t ? numCells * totDim : 0, &u_t, numCells * totDim * totDim, &elemMat, hasDyn ? numCells * totDim * totDim : 0, &elemMatD, numCells * totDim, &y, totDim, &z));
58179566063dSJacob Faibussowitsch   if (dmAux) PetscCall(PetscMalloc1(numCells * totDimAux, &a));
58189566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateField(dm, &coordField));
58198e3a2eefSMatthew G. Knepley   for (c = cStart; c < cEnd; ++c) {
58208e3a2eefSMatthew G. Knepley     const PetscInt cell = cells ? cells[c] : c;
58218e3a2eefSMatthew G. Knepley     const PetscInt cind = c - cStart;
58228e3a2eefSMatthew G. Knepley     PetscScalar   *x = NULL, *x_t = NULL;
58238e3a2eefSMatthew G. Knepley     PetscInt       i;
58248e3a2eefSMatthew G. Knepley 
58259566063dSJacob Faibussowitsch     PetscCall(DMPlexVecGetClosure(plex, section, X, cell, NULL, &x));
58268e3a2eefSMatthew G. Knepley     for (i = 0; i < totDim; ++i) u[cind * totDim + i] = x[i];
58279566063dSJacob Faibussowitsch     PetscCall(DMPlexVecRestoreClosure(plex, section, X, cell, NULL, &x));
58288e3a2eefSMatthew G. Knepley     if (X_t) {
58299566063dSJacob Faibussowitsch       PetscCall(DMPlexVecGetClosure(plex, section, X_t, cell, NULL, &x_t));
58308e3a2eefSMatthew G. Knepley       for (i = 0; i < totDim; ++i) u_t[cind * totDim + i] = x_t[i];
58319566063dSJacob Faibussowitsch       PetscCall(DMPlexVecRestoreClosure(plex, section, X_t, cell, NULL, &x_t));
58328e3a2eefSMatthew G. Knepley     }
58338e3a2eefSMatthew G. Knepley     if (dmAux) {
58348e3a2eefSMatthew G. Knepley       PetscInt subcell;
58359566063dSJacob Faibussowitsch       PetscCall(DMGetEnclosurePoint(dmAux, dm, encAux, cell, &subcell));
58369566063dSJacob Faibussowitsch       PetscCall(DMPlexVecGetClosure(plexAux, sectionAux, A, subcell, NULL, &x));
58378e3a2eefSMatthew G. Knepley       for (i = 0; i < totDimAux; ++i) a[cind * totDimAux + i] = x[i];
58389566063dSJacob Faibussowitsch       PetscCall(DMPlexVecRestoreClosure(plexAux, sectionAux, A, subcell, NULL, &x));
58398e3a2eefSMatthew G. Knepley     }
58409566063dSJacob Faibussowitsch     PetscCall(DMPlexVecGetClosure(plex, section, Y, cell, NULL, &x));
58418e3a2eefSMatthew G. Knepley     for (i = 0; i < totDim; ++i) y[cind * totDim + i] = x[i];
58429566063dSJacob Faibussowitsch     PetscCall(DMPlexVecRestoreClosure(plex, section, Y, cell, NULL, &x));
58438e3a2eefSMatthew G. Knepley   }
58449566063dSJacob Faibussowitsch   PetscCall(PetscArrayzero(elemMat, numCells * totDim * totDim));
58459566063dSJacob Faibussowitsch   if (hasDyn) PetscCall(PetscArrayzero(elemMatD, numCells * totDim * totDim));
58468e3a2eefSMatthew G. Knepley   for (fieldI = 0; fieldI < Nf; ++fieldI) {
58478e3a2eefSMatthew G. Knepley     PetscFE  fe;
58488e3a2eefSMatthew G. Knepley     PetscInt Nb;
58498e3a2eefSMatthew G. Knepley     /* Conforming batches */
58508e3a2eefSMatthew G. Knepley     PetscInt numChunks, numBatches, numBlocks, Ne, blockSize, batchSize;
58518e3a2eefSMatthew G. Knepley     /* Remainder */
58528e3a2eefSMatthew G. Knepley     PetscInt        Nr, offset, Nq;
58538e3a2eefSMatthew G. Knepley     PetscQuadrature qGeom = NULL;
58548e3a2eefSMatthew G. Knepley     PetscInt        maxDegree;
58558e3a2eefSMatthew G. Knepley     PetscFEGeom    *cgeomFEM, *chunkGeom = NULL, *remGeom = NULL;
58568e3a2eefSMatthew G. Knepley 
58579566063dSJacob Faibussowitsch     PetscCall(PetscDSGetDiscretization(prob, fieldI, (PetscObject *)&fe));
58589566063dSJacob Faibussowitsch     PetscCall(PetscFEGetQuadrature(fe, &quad));
58599566063dSJacob Faibussowitsch     PetscCall(PetscFEGetDimension(fe, &Nb));
58609566063dSJacob Faibussowitsch     PetscCall(PetscFEGetTileSizes(fe, NULL, &numBlocks, NULL, &numBatches));
58619566063dSJacob Faibussowitsch     PetscCall(DMFieldGetDegree(coordField, cellIS, NULL, &maxDegree));
58629566063dSJacob Faibussowitsch     if (maxDegree <= 1) PetscCall(DMFieldCreateDefaultQuadrature(coordField, cellIS, &qGeom));
58638e3a2eefSMatthew G. Knepley     if (!qGeom) {
58649566063dSJacob Faibussowitsch       PetscCall(PetscFEGetQuadrature(fe, &qGeom));
58659566063dSJacob Faibussowitsch       PetscCall(PetscObjectReference((PetscObject)qGeom));
58668e3a2eefSMatthew G. Knepley     }
58679566063dSJacob Faibussowitsch     PetscCall(PetscQuadratureGetData(qGeom, NULL, NULL, &Nq, NULL, NULL));
58689566063dSJacob Faibussowitsch     PetscCall(DMSNESGetFEGeom(coordField, cellIS, qGeom, PETSC_FALSE, &cgeomFEM));
58698e3a2eefSMatthew G. Knepley     blockSize = Nb;
58708e3a2eefSMatthew G. Knepley     batchSize = numBlocks * blockSize;
58719566063dSJacob Faibussowitsch     PetscCall(PetscFESetTileSizes(fe, blockSize, numBlocks, batchSize, numBatches));
58728e3a2eefSMatthew G. Knepley     numChunks = numCells / (numBatches * batchSize);
58738e3a2eefSMatthew G. Knepley     Ne        = numChunks * numBatches * batchSize;
58748e3a2eefSMatthew G. Knepley     Nr        = numCells % (numBatches * batchSize);
58758e3a2eefSMatthew G. Knepley     offset    = numCells - Nr;
58769566063dSJacob Faibussowitsch     PetscCall(PetscFEGeomGetChunk(cgeomFEM, 0, offset, &chunkGeom));
58779566063dSJacob Faibussowitsch     PetscCall(PetscFEGeomGetChunk(cgeomFEM, offset, numCells, &remGeom));
58788e3a2eefSMatthew G. Knepley     for (fieldJ = 0; fieldJ < Nf; ++fieldJ) {
58798e3a2eefSMatthew G. Knepley       key.field = fieldI * Nf + fieldJ;
58809566063dSJacob Faibussowitsch       PetscCall(PetscFEIntegrateJacobian(prob, PETSCFE_JACOBIAN, key, Ne, chunkGeom, u, u_t, probAux, a, t, X_tShift, elemMat));
58819566063dSJacob Faibussowitsch       PetscCall(PetscFEIntegrateJacobian(prob, PETSCFE_JACOBIAN, key, Nr, remGeom, &u[offset * totDim], u_t ? &u_t[offset * totDim] : NULL, probAux, &a[offset * totDimAux], t, X_tShift, &elemMat[offset * totDim * totDim]));
58828e3a2eefSMatthew G. Knepley       if (hasDyn) {
58839566063dSJacob Faibussowitsch         PetscCall(PetscFEIntegrateJacobian(prob, PETSCFE_JACOBIAN_DYN, key, Ne, chunkGeom, u, u_t, probAux, a, t, X_tShift, elemMatD));
58849566063dSJacob Faibussowitsch         PetscCall(PetscFEIntegrateJacobian(prob, PETSCFE_JACOBIAN_DYN, key, Nr, remGeom, &u[offset * totDim], u_t ? &u_t[offset * totDim] : NULL, probAux, &a[offset * totDimAux], t, X_tShift, &elemMatD[offset * totDim * totDim]));
58858e3a2eefSMatthew G. Knepley       }
58868e3a2eefSMatthew G. Knepley     }
58879566063dSJacob Faibussowitsch     PetscCall(PetscFEGeomRestoreChunk(cgeomFEM, offset, numCells, &remGeom));
58889566063dSJacob Faibussowitsch     PetscCall(PetscFEGeomRestoreChunk(cgeomFEM, 0, offset, &chunkGeom));
58899566063dSJacob Faibussowitsch     PetscCall(DMSNESRestoreFEGeom(coordField, cellIS, qGeom, PETSC_FALSE, &cgeomFEM));
58909566063dSJacob Faibussowitsch     PetscCall(PetscQuadratureDestroy(&qGeom));
58918e3a2eefSMatthew G. Knepley   }
58928e3a2eefSMatthew G. Knepley   if (hasDyn) {
58938e3a2eefSMatthew G. Knepley     for (c = 0; c < numCells * totDim * totDim; ++c) elemMat[c] += X_tShift * elemMatD[c];
58948e3a2eefSMatthew G. Knepley   }
58958e3a2eefSMatthew G. Knepley   for (c = cStart; c < cEnd; ++c) {
58968e3a2eefSMatthew G. Knepley     const PetscInt     cell = cells ? cells[c] : c;
58978e3a2eefSMatthew G. Knepley     const PetscInt     cind = c - cStart;
58988e3a2eefSMatthew G. Knepley     const PetscBLASInt M = totDim, one = 1;
58998e3a2eefSMatthew G. Knepley     const PetscScalar  a = 1.0, b = 0.0;
59008e3a2eefSMatthew G. Knepley 
5901792fecdfSBarry Smith     PetscCallBLAS("BLASgemv", BLASgemv_("N", &M, &M, &a, &elemMat[cind * totDim * totDim], &M, &y[cind * totDim], &one, &b, z, &one));
59028e3a2eefSMatthew G. Knepley     if (mesh->printFEM > 1) {
59039566063dSJacob Faibussowitsch       PetscCall(DMPrintCellMatrix(c, name, totDim, totDim, &elemMat[cind * totDim * totDim]));
59049566063dSJacob Faibussowitsch       PetscCall(DMPrintCellVector(c, "Y", totDim, &y[cind * totDim]));
59059566063dSJacob Faibussowitsch       PetscCall(DMPrintCellVector(c, "Z", totDim, z));
59068e3a2eefSMatthew G. Knepley     }
59079566063dSJacob Faibussowitsch     PetscCall(DMPlexVecSetClosure(dm, section, Z, cell, z, ADD_VALUES));
59088e3a2eefSMatthew G. Knepley   }
59099566063dSJacob Faibussowitsch   PetscCall(PetscFree6(u, u_t, elemMat, elemMatD, y, z));
59108e3a2eefSMatthew G. Knepley   if (mesh->printFEM) {
59119566063dSJacob Faibussowitsch     PetscCall(PetscPrintf(PetscObjectComm((PetscObject)Z), "Z:\n"));
59129566063dSJacob Faibussowitsch     PetscCall(VecView(Z, NULL));
59138e3a2eefSMatthew G. Knepley   }
59141059d808SMatthew G. Knepley   PetscCall(ISRestorePointRange(cellIS, &cStart, &cEnd, &cells));
59159566063dSJacob Faibussowitsch   PetscCall(PetscFree(a));
59169566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&cellIS));
59179566063dSJacob Faibussowitsch   PetscCall(DMDestroy(&plexAux));
59189566063dSJacob Faibussowitsch   PetscCall(DMDestroy(&plex));
59199566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(DMPLEX_JacobianFEM, dm, 0, 0, 0));
59203ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
59218e3a2eefSMatthew G. Knepley }
5922