xref: /petsc/src/dm/impls/plex/plexglvis.c (revision 48a46eb9bd028bec07ec0f396b1a3abb43f14558)
18135c375SStefano Zampini #include <petsc/private/glvisviewerimpl.h>
28135c375SStefano Zampini #include <petsc/private/petscimpl.h>
38135c375SStefano Zampini #include <petsc/private/dmpleximpl.h>
48135c375SStefano Zampini #include <petscbt.h>
58135c375SStefano Zampini #include <petscdmplex.h>
68135c375SStefano Zampini #include <petscsf.h>
78135c375SStefano Zampini #include <petscds.h>
88135c375SStefano Zampini 
98135c375SStefano Zampini typedef struct {
108135c375SStefano Zampini   PetscInt    nf;
118135c375SStefano Zampini   VecScatter *scctx;
128135c375SStefano Zampini } GLVisViewerCtx;
138135c375SStefano Zampini 
149371c9d4SSatish Balay static PetscErrorCode DestroyGLVisViewerCtx_Private(void *vctx) {
158135c375SStefano Zampini   GLVisViewerCtx *ctx = (GLVisViewerCtx *)vctx;
168135c375SStefano Zampini   PetscInt        i;
178135c375SStefano Zampini 
188135c375SStefano Zampini   PetscFunctionBegin;
19*48a46eb9SPierre Jolivet   for (i = 0; i < ctx->nf; i++) PetscCall(VecScatterDestroy(&ctx->scctx[i]));
209566063dSJacob Faibussowitsch   PetscCall(PetscFree(ctx->scctx));
219566063dSJacob Faibussowitsch   PetscCall(PetscFree(vctx));
228135c375SStefano Zampini   PetscFunctionReturn(0);
238135c375SStefano Zampini }
248135c375SStefano Zampini 
259371c9d4SSatish Balay static PetscErrorCode DMPlexSampleGLVisFields_Private(PetscObject oX, PetscInt nf, PetscObject oXfield[], void *vctx) {
268135c375SStefano Zampini   GLVisViewerCtx *ctx = (GLVisViewerCtx *)vctx;
278135c375SStefano Zampini   PetscInt        f;
288135c375SStefano Zampini 
298135c375SStefano Zampini   PetscFunctionBegin;
308135c375SStefano Zampini   for (f = 0; f < nf; f++) {
319566063dSJacob Faibussowitsch     PetscCall(VecScatterBegin(ctx->scctx[f], (Vec)oX, (Vec)oXfield[f], INSERT_VALUES, SCATTER_FORWARD));
329566063dSJacob Faibussowitsch     PetscCall(VecScatterEnd(ctx->scctx[f], (Vec)oX, (Vec)oXfield[f], INSERT_VALUES, SCATTER_FORWARD));
338135c375SStefano Zampini   }
348135c375SStefano Zampini   PetscFunctionReturn(0);
358135c375SStefano Zampini }
368135c375SStefano Zampini 
378135c375SStefano Zampini /* for FEM, it works for H1 fields only and extracts dofs at cell vertices, discarding any other dof */
389371c9d4SSatish Balay PetscErrorCode DMSetUpGLVisViewer_Plex(PetscObject odm, PetscViewer viewer) {
398135c375SStefano Zampini   DM              dm = (DM)odm;
404cac2994SStefano Zampini   Vec             xlocal, xfield, *Ufield;
418135c375SStefano Zampini   PetscDS         ds;
428135c375SStefano Zampini   IS              globalNum, isfield;
438135c375SStefano Zampini   PetscBT         vown;
448135c375SStefano Zampini   char          **fieldname = NULL, **fec_type = NULL;
458135c375SStefano Zampini   const PetscInt *gNum;
46bb77a09fSStefano Zampini   PetscInt       *nlocal, *bs, *idxs, *dims;
478135c375SStefano Zampini   PetscInt        f, maxfields, nfields, c, totc, totdofs, Nv, cum, i;
48b135d7daSStefano Zampini   PetscInt        dim, cStart, cEnd, vStart, vEnd;
498135c375SStefano Zampini   GLVisViewerCtx *ctx;
508135c375SStefano Zampini   PetscSection    s;
518135c375SStefano Zampini 
528135c375SStefano Zampini   PetscFunctionBegin;
539566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dm, &dim));
549566063dSJacob Faibussowitsch   PetscCall(DMPlexGetDepthStratum(dm, 0, &vStart, &vEnd));
559566063dSJacob Faibussowitsch   PetscCall(DMPlexGetHeightStratum(dm, 0, &cStart, &cEnd));
569566063dSJacob Faibussowitsch   PetscCall(PetscObjectQuery((PetscObject)dm, "_glvis_plex_gnum", (PetscObject *)&globalNum));
57b135d7daSStefano Zampini   if (!globalNum) {
589566063dSJacob Faibussowitsch     PetscCall(DMPlexCreateCellNumbering_Internal(dm, PETSC_TRUE, &globalNum));
599566063dSJacob Faibussowitsch     PetscCall(PetscObjectCompose((PetscObject)dm, "_glvis_plex_gnum", (PetscObject)globalNum));
609566063dSJacob Faibussowitsch     PetscCall(PetscObjectDereference((PetscObject)globalNum));
61b135d7daSStefano Zampini   }
629566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(globalNum, &gNum));
639566063dSJacob Faibussowitsch   PetscCall(PetscBTCreate(vEnd - vStart, &vown));
648135c375SStefano Zampini   for (c = cStart, totc = 0; c < cEnd; c++) {
658135c375SStefano Zampini     if (gNum[c - cStart] >= 0) {
668135c375SStefano Zampini       PetscInt i, numPoints, *points = NULL;
678135c375SStefano Zampini 
688135c375SStefano Zampini       totc++;
699566063dSJacob Faibussowitsch       PetscCall(DMPlexGetTransitiveClosure(dm, c, PETSC_TRUE, &numPoints, &points));
708135c375SStefano Zampini       for (i = 0; i < numPoints * 2; i += 2) {
71*48a46eb9SPierre Jolivet         if ((points[i] >= vStart) && (points[i] < vEnd)) PetscCall(PetscBTSet(vown, points[i] - vStart));
728135c375SStefano Zampini       }
739566063dSJacob Faibussowitsch       PetscCall(DMPlexRestoreTransitiveClosure(dm, c, PETSC_TRUE, &numPoints, &points));
748135c375SStefano Zampini     }
758135c375SStefano Zampini   }
769371c9d4SSatish Balay   for (f = 0, Nv = 0; f < vEnd - vStart; f++)
779371c9d4SSatish Balay     if (PetscLikely(PetscBTLookup(vown, f))) Nv++;
788135c375SStefano Zampini 
799566063dSJacob Faibussowitsch   PetscCall(DMCreateLocalVector(dm, &xlocal));
809566063dSJacob Faibussowitsch   PetscCall(VecGetLocalSize(xlocal, &totdofs));
819566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dm, &s));
829566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetNumFields(s, &nfields));
838135c375SStefano Zampini   for (f = 0, maxfields = 0; f < nfields; f++) {
848135c375SStefano Zampini     PetscInt bs;
858135c375SStefano Zampini 
869566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetFieldComponents(s, f, &bs));
878135c375SStefano Zampini     maxfields += bs;
888135c375SStefano Zampini   }
899566063dSJacob Faibussowitsch   PetscCall(PetscCalloc7(maxfields, &fieldname, maxfields, &nlocal, maxfields, &bs, maxfields, &dims, maxfields, &fec_type, totdofs, &idxs, maxfields, &Ufield));
909566063dSJacob Faibussowitsch   PetscCall(PetscNew(&ctx));
919566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(maxfields, &ctx->scctx));
929566063dSJacob Faibussowitsch   PetscCall(DMGetDS(dm, &ds));
938135c375SStefano Zampini   if (ds) {
948135c375SStefano Zampini     for (f = 0; f < nfields; f++) {
958135c375SStefano Zampini       const char *fname;
968135c375SStefano Zampini       char        name[256];
978135c375SStefano Zampini       PetscObject disc;
988135c375SStefano Zampini       size_t      len;
998135c375SStefano Zampini 
1009566063dSJacob Faibussowitsch       PetscCall(PetscSectionGetFieldName(s, f, &fname));
1019566063dSJacob Faibussowitsch       PetscCall(PetscStrlen(fname, &len));
1028135c375SStefano Zampini       if (len) {
1039566063dSJacob Faibussowitsch         PetscCall(PetscStrcpy(name, fname));
1048135c375SStefano Zampini       } else {
10563a3b9bcSJacob Faibussowitsch         PetscCall(PetscSNPrintf(name, 256, "Field%" PetscInt_FMT, f));
1068135c375SStefano Zampini       }
1079566063dSJacob Faibussowitsch       PetscCall(PetscDSGetDiscretization(ds, f, &disc));
1088135c375SStefano Zampini       if (disc) {
1098135c375SStefano Zampini         PetscClassId id;
1108135c375SStefano Zampini         PetscInt     Nc;
1118135c375SStefano Zampini         char         fec[64];
1128135c375SStefano Zampini 
1139566063dSJacob Faibussowitsch         PetscCall(PetscObjectGetClassId(disc, &id));
1148135c375SStefano Zampini         if (id == PETSCFE_CLASSID) {
1158135c375SStefano Zampini           PetscFE            fem = (PetscFE)disc;
1168135c375SStefano Zampini           PetscDualSpace     sp;
1178135c375SStefano Zampini           PetscDualSpaceType spname;
1188135c375SStefano Zampini           PetscInt           order;
1198135c375SStefano Zampini           PetscBool          islag, continuous, H1 = PETSC_TRUE;
1208135c375SStefano Zampini 
1219566063dSJacob Faibussowitsch           PetscCall(PetscFEGetNumComponents(fem, &Nc));
1229566063dSJacob Faibussowitsch           PetscCall(PetscFEGetDualSpace(fem, &sp));
1239566063dSJacob Faibussowitsch           PetscCall(PetscDualSpaceGetType(sp, &spname));
1249566063dSJacob Faibussowitsch           PetscCall(PetscStrcmp(spname, PETSCDUALSPACELAGRANGE, &islag));
12528b400f6SJacob Faibussowitsch           PetscCheck(islag, PetscObjectComm((PetscObject)dm), PETSC_ERR_SUP, "Unsupported dual space");
1269566063dSJacob Faibussowitsch           PetscCall(PetscDualSpaceLagrangeGetContinuity(sp, &continuous));
1279566063dSJacob Faibussowitsch           PetscCall(PetscDualSpaceGetOrder(sp, &order));
12828d58a37SPierre Jolivet           if (continuous && order > 0) { /* no support for high-order viz, still have to figure out the numbering */
12963a3b9bcSJacob Faibussowitsch             PetscCall(PetscSNPrintf(fec, 64, "FiniteElementCollection: H1_%" PetscInt_FMT "D_P1", dim));
1308135c375SStefano Zampini           } else {
13163a3b9bcSJacob Faibussowitsch             PetscCheck(continuous || !order, PetscObjectComm((PetscObject)dm), PETSC_ERR_SUP, "Discontinuous space visualization currently unsupported for order %" PetscInt_FMT, order);
1328135c375SStefano Zampini             H1 = PETSC_FALSE;
13363a3b9bcSJacob Faibussowitsch             PetscCall(PetscSNPrintf(fec, 64, "FiniteElementCollection: L2_%" PetscInt_FMT "D_P%" PetscInt_FMT, dim, order));
1348135c375SStefano Zampini           }
1359566063dSJacob Faibussowitsch           PetscCall(PetscStrallocpy(name, &fieldname[ctx->nf]));
1368135c375SStefano Zampini           bs[ctx->nf]   = Nc;
137bb77a09fSStefano Zampini           dims[ctx->nf] = dim;
1388135c375SStefano Zampini           if (H1) {
1398135c375SStefano Zampini             nlocal[ctx->nf] = Nc * Nv;
1409566063dSJacob Faibussowitsch             PetscCall(PetscStrallocpy(fec, &fec_type[ctx->nf]));
1419566063dSJacob Faibussowitsch             PetscCall(VecCreateSeq(PETSC_COMM_SELF, Nv * Nc, &xfield));
1428135c375SStefano Zampini             for (i = 0, cum = 0; i < vEnd - vStart; i++) {
1438135c375SStefano Zampini               PetscInt j, off;
1448135c375SStefano Zampini 
1458135c375SStefano Zampini               if (PetscUnlikely(!PetscBTLookup(vown, i))) continue;
1469566063dSJacob Faibussowitsch               PetscCall(PetscSectionGetFieldOffset(s, i + vStart, f, &off));
1478135c375SStefano Zampini               for (j = 0; j < Nc; j++) idxs[cum++] = off + j;
1488135c375SStefano Zampini             }
1499566063dSJacob Faibussowitsch             PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)xlocal), Nv * Nc, idxs, PETSC_USE_POINTER, &isfield));
1508135c375SStefano Zampini           } else {
1518135c375SStefano Zampini             nlocal[ctx->nf] = Nc * totc;
1529566063dSJacob Faibussowitsch             PetscCall(PetscStrallocpy(fec, &fec_type[ctx->nf]));
1539566063dSJacob Faibussowitsch             PetscCall(VecCreateSeq(PETSC_COMM_SELF, Nc * totc, &xfield));
1548135c375SStefano Zampini             for (i = 0, cum = 0; i < cEnd - cStart; i++) {
1558135c375SStefano Zampini               PetscInt j, off;
1568135c375SStefano Zampini 
1578135c375SStefano Zampini               if (PetscUnlikely(gNum[i] < 0)) continue;
1589566063dSJacob Faibussowitsch               PetscCall(PetscSectionGetFieldOffset(s, i + cStart, f, &off));
1598135c375SStefano Zampini               for (j = 0; j < Nc; j++) idxs[cum++] = off + j;
1608135c375SStefano Zampini             }
1619566063dSJacob Faibussowitsch             PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)xlocal), totc * Nc, idxs, PETSC_USE_POINTER, &isfield));
1628135c375SStefano Zampini           }
1639566063dSJacob Faibussowitsch           PetscCall(VecScatterCreate(xlocal, isfield, xfield, NULL, &ctx->scctx[ctx->nf]));
1649566063dSJacob Faibussowitsch           PetscCall(VecDestroy(&xfield));
1659566063dSJacob Faibussowitsch           PetscCall(ISDestroy(&isfield));
1668135c375SStefano Zampini           ctx->nf++;
1678135c375SStefano Zampini         } else if (id == PETSCFV_CLASSID) {
1688135c375SStefano Zampini           PetscInt c;
1698135c375SStefano Zampini 
1709566063dSJacob Faibussowitsch           PetscCall(PetscFVGetNumComponents((PetscFV)disc, &Nc));
17163a3b9bcSJacob Faibussowitsch           PetscCall(PetscSNPrintf(fec, 64, "FiniteElementCollection: L2_%" PetscInt_FMT "D_P0", dim));
1728135c375SStefano Zampini           for (c = 0; c < Nc; c++) {
1738135c375SStefano Zampini             char comp[256];
17463a3b9bcSJacob Faibussowitsch             PetscCall(PetscSNPrintf(comp, 256, "%s-Comp%" PetscInt_FMT, name, c));
1759566063dSJacob Faibussowitsch             PetscCall(PetscStrallocpy(comp, &fieldname[ctx->nf]));
1768135c375SStefano Zampini             bs[ctx->nf]     = 1; /* Does PetscFV support components with different block size? */
1778135c375SStefano Zampini             nlocal[ctx->nf] = totc;
178bb77a09fSStefano Zampini             dims[ctx->nf]   = dim;
1799566063dSJacob Faibussowitsch             PetscCall(PetscStrallocpy(fec, &fec_type[ctx->nf]));
1809566063dSJacob Faibussowitsch             PetscCall(VecCreateSeq(PETSC_COMM_SELF, totc, &xfield));
1818135c375SStefano Zampini             for (i = 0, cum = 0; i < cEnd - cStart; i++) {
1828135c375SStefano Zampini               PetscInt off;
1838135c375SStefano Zampini 
1848135c375SStefano Zampini               if (PetscUnlikely(gNum[i]) < 0) continue;
1859566063dSJacob Faibussowitsch               PetscCall(PetscSectionGetFieldOffset(s, i + cStart, f, &off));
1868135c375SStefano Zampini               idxs[cum++] = off + c;
1878135c375SStefano Zampini             }
1889566063dSJacob Faibussowitsch             PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)xlocal), totc, idxs, PETSC_USE_POINTER, &isfield));
1899566063dSJacob Faibussowitsch             PetscCall(VecScatterCreate(xlocal, isfield, xfield, NULL, &ctx->scctx[ctx->nf]));
1909566063dSJacob Faibussowitsch             PetscCall(VecDestroy(&xfield));
1919566063dSJacob Faibussowitsch             PetscCall(ISDestroy(&isfield));
1928135c375SStefano Zampini             ctx->nf++;
1938135c375SStefano Zampini           }
19463a3b9bcSJacob Faibussowitsch         } else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, f);
19563a3b9bcSJacob Faibussowitsch       } else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_SUP, "Missing discretization for field %" PetscInt_FMT, f);
1968135c375SStefano Zampini     }
1978135c375SStefano Zampini   } else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_SUP, "Needs a DS attached to the DM");
1989566063dSJacob Faibussowitsch   PetscCall(PetscBTDestroy(&vown));
1999566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&xlocal));
2009566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(globalNum, &gNum));
2018135c375SStefano Zampini 
2024cac2994SStefano Zampini   /* create work vectors */
2034cac2994SStefano Zampini   for (f = 0; f < ctx->nf; f++) {
2049566063dSJacob Faibussowitsch     PetscCall(VecCreateMPI(PetscObjectComm((PetscObject)dm), nlocal[f], PETSC_DECIDE, &Ufield[f]));
2059566063dSJacob Faibussowitsch     PetscCall(PetscObjectSetName((PetscObject)Ufield[f], fieldname[f]));
2069566063dSJacob Faibussowitsch     PetscCall(VecSetBlockSize(Ufield[f], bs[f]));
2079566063dSJacob Faibussowitsch     PetscCall(VecSetDM(Ufield[f], dm));
2084cac2994SStefano Zampini   }
2094cac2994SStefano Zampini 
2108135c375SStefano Zampini   /* customize the viewer */
2119566063dSJacob Faibussowitsch   PetscCall(PetscViewerGLVisSetFields(viewer, ctx->nf, (const char **)fec_type, dims, DMPlexSampleGLVisFields_Private, (PetscObject *)Ufield, ctx, DestroyGLVisViewerCtx_Private));
2128135c375SStefano Zampini   for (f = 0; f < ctx->nf; f++) {
2139566063dSJacob Faibussowitsch     PetscCall(PetscFree(fieldname[f]));
2149566063dSJacob Faibussowitsch     PetscCall(PetscFree(fec_type[f]));
2159566063dSJacob Faibussowitsch     PetscCall(VecDestroy(&Ufield[f]));
2168135c375SStefano Zampini   }
2179566063dSJacob Faibussowitsch   PetscCall(PetscFree7(fieldname, nlocal, bs, dims, fec_type, idxs, Ufield));
2188135c375SStefano Zampini   PetscFunctionReturn(0);
2198135c375SStefano Zampini }
2208135c375SStefano Zampini 
2219371c9d4SSatish Balay typedef enum {
2229371c9d4SSatish Balay   MFEM_POINT = 0,
2239371c9d4SSatish Balay   MFEM_SEGMENT,
2249371c9d4SSatish Balay   MFEM_TRIANGLE,
2259371c9d4SSatish Balay   MFEM_SQUARE,
2269371c9d4SSatish Balay   MFEM_TETRAHEDRON,
2279371c9d4SSatish Balay   MFEM_CUBE,
2289371c9d4SSatish Balay   MFEM_PRISM,
2299371c9d4SSatish Balay   MFEM_UNDEF
2309371c9d4SSatish Balay } MFEM_cid;
2318135c375SStefano Zampini 
2329371c9d4SSatish Balay MFEM_cid mfem_table_cid[4][7] = {
2339371c9d4SSatish Balay   {MFEM_POINT, MFEM_UNDEF, MFEM_UNDEF,   MFEM_UNDEF,    MFEM_UNDEF,       MFEM_UNDEF, MFEM_UNDEF},
2348135c375SStefano Zampini   {MFEM_POINT, MFEM_UNDEF, MFEM_SEGMENT, MFEM_UNDEF,    MFEM_UNDEF,       MFEM_UNDEF, MFEM_UNDEF},
2358135c375SStefano Zampini   {MFEM_POINT, MFEM_UNDEF, MFEM_SEGMENT, MFEM_TRIANGLE, MFEM_SQUARE,      MFEM_UNDEF, MFEM_UNDEF},
2369371c9d4SSatish Balay   {MFEM_POINT, MFEM_UNDEF, MFEM_SEGMENT, MFEM_UNDEF,    MFEM_TETRAHEDRON, MFEM_PRISM, MFEM_CUBE }
2379371c9d4SSatish Balay };
2388135c375SStefano Zampini 
2399371c9d4SSatish Balay MFEM_cid mfem_table_cid_unint[4][9] = {
2409371c9d4SSatish Balay   {MFEM_POINT, MFEM_UNDEF, MFEM_UNDEF,   MFEM_UNDEF,    MFEM_UNDEF,       MFEM_UNDEF, MFEM_PRISM, MFEM_UNDEF, MFEM_UNDEF},
241b135d7daSStefano Zampini   {MFEM_POINT, MFEM_UNDEF, MFEM_SEGMENT, MFEM_UNDEF,    MFEM_UNDEF,       MFEM_UNDEF, MFEM_PRISM, MFEM_UNDEF, MFEM_UNDEF},
242b135d7daSStefano Zampini   {MFEM_POINT, MFEM_UNDEF, MFEM_SEGMENT, MFEM_TRIANGLE, MFEM_SQUARE,      MFEM_UNDEF, MFEM_PRISM, MFEM_UNDEF, MFEM_UNDEF},
2439371c9d4SSatish Balay   {MFEM_POINT, MFEM_UNDEF, MFEM_SEGMENT, MFEM_UNDEF,    MFEM_TETRAHEDRON, MFEM_UNDEF, MFEM_PRISM, MFEM_UNDEF, MFEM_CUBE }
2449371c9d4SSatish Balay };
245044a5661SStefano Zampini 
2469371c9d4SSatish Balay static PetscErrorCode DMPlexGetPointMFEMCellID_Internal(DM dm, DMLabel label, PetscInt minl, PetscInt p, PetscInt *mid, PetscInt *cid) {
2478135c375SStefano Zampini   DMLabel  dlabel;
248044a5661SStefano Zampini   PetscInt depth, csize, pdepth, dim;
2498135c375SStefano Zampini 
2508135c375SStefano Zampini   PetscFunctionBegin;
2519566063dSJacob Faibussowitsch   PetscCall(DMPlexGetDepthLabel(dm, &dlabel));
2529566063dSJacob Faibussowitsch   PetscCall(DMLabelGetValue(dlabel, p, &pdepth));
2539566063dSJacob Faibussowitsch   PetscCall(DMPlexGetConeSize(dm, p, &csize));
2549566063dSJacob Faibussowitsch   PetscCall(DMPlexGetDepth(dm, &depth));
2559566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dm, &dim));
2568135c375SStefano Zampini   if (label) {
2579566063dSJacob Faibussowitsch     PetscCall(DMLabelGetValue(label, p, mid));
258f86f7544SStefano Zampini     *mid = *mid - minl + 1; /* MFEM does not like negative markers */
25977eacf09SStefano Zampini   } else *mid = 1;
260044a5661SStefano Zampini   if (depth >= 0 && dim != depth) { /* not interpolated, it assumes cell-vertex mesh */
2611dca8a05SBarry Smith     PetscCheck(dim >= 0 && dim <= 3, PETSC_COMM_SELF, PETSC_ERR_SUP, "Dimension %" PetscInt_FMT, dim);
26263a3b9bcSJacob Faibussowitsch     PetscCheck(csize <= 8, PETSC_COMM_SELF, PETSC_ERR_SUP, "Found cone size %" PetscInt_FMT " for point %" PetscInt_FMT, csize, p);
26363a3b9bcSJacob Faibussowitsch     PetscCheck(depth == 1, PETSC_COMM_SELF, PETSC_ERR_SUP, "Found depth %" PetscInt_FMT " for point %" PetscInt_FMT ". You should interpolate the mesh first", depth, p);
264044a5661SStefano Zampini     *cid = mfem_table_cid_unint[dim][csize];
265044a5661SStefano Zampini   } else {
26663a3b9bcSJacob Faibussowitsch     PetscCheck(csize <= 6, PETSC_COMM_SELF, PETSC_ERR_SUP, "Cone size %" PetscInt_FMT " for point %" PetscInt_FMT, csize, p);
2671dca8a05SBarry Smith     PetscCheck(pdepth >= 0 && pdepth <= 3, PETSC_COMM_SELF, PETSC_ERR_SUP, "Depth %" PetscInt_FMT " for point %" PetscInt_FMT, csize, p);
268044a5661SStefano Zampini     *cid = mfem_table_cid[pdepth][csize];
269044a5661SStefano Zampini   }
2708135c375SStefano Zampini   PetscFunctionReturn(0);
2718135c375SStefano Zampini }
2728135c375SStefano Zampini 
2739371c9d4SSatish Balay static PetscErrorCode DMPlexGetPointMFEMVertexIDs_Internal(DM dm, PetscInt p, PetscSection csec, PetscInt *nv, PetscInt vids[]) {
274cc0d3ed7SStefano Zampini   PetscInt dim, sdim, dof = 0, off = 0, i, q, vStart, vEnd, numPoints, *points = NULL;
2758135c375SStefano Zampini 
2768135c375SStefano Zampini   PetscFunctionBegin;
2779566063dSJacob Faibussowitsch   PetscCall(DMPlexGetDepthStratum(dm, 0, &vStart, &vEnd));
2789566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dm, &dim));
279cc0d3ed7SStefano Zampini   sdim = dim;
280cc0d3ed7SStefano Zampini   if (csec) {
28184f354e3SLisandro Dalcin     PetscInt sStart, sEnd;
28284f354e3SLisandro Dalcin 
2839566063dSJacob Faibussowitsch     PetscCall(DMGetCoordinateDim(dm, &sdim));
2849566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetChart(csec, &sStart, &sEnd));
2859566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetOffset(csec, vStart, &off));
286cc0d3ed7SStefano Zampini     off = off / sdim;
287*48a46eb9SPierre Jolivet     if (p >= sStart && p < sEnd) PetscCall(PetscSectionGetDof(csec, p, &dof));
28884f354e3SLisandro Dalcin   }
289cc0d3ed7SStefano Zampini   if (!dof) {
2909566063dSJacob Faibussowitsch     PetscCall(DMPlexGetTransitiveClosure(dm, p, PETSC_TRUE, &numPoints, &points));
2918135c375SStefano Zampini     for (i = 0, q = 0; i < numPoints * 2; i += 2)
2929371c9d4SSatish Balay       if ((points[i] >= vStart) && (points[i] < vEnd)) vids[q++] = points[i] - vStart + off;
2939566063dSJacob Faibussowitsch     PetscCall(DMPlexRestoreTransitiveClosure(dm, p, PETSC_TRUE, &numPoints, &points));
294cc0d3ed7SStefano Zampini   } else {
2959566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetOffset(csec, p, &off));
2969566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetDof(csec, p, &dof));
29796ca5757SLisandro Dalcin     for (q = 0; q < dof / sdim; q++) vids[q] = off / sdim + q;
298cc0d3ed7SStefano Zampini   }
2998135c375SStefano Zampini   *nv = q;
3008135c375SStefano Zampini   PetscFunctionReturn(0);
3018135c375SStefano Zampini }
3028135c375SStefano Zampini 
3039371c9d4SSatish Balay static PetscErrorCode GLVisCreateFE(PetscFE femIn, char name[32], PetscFE *fem, IS *perm) {
304066ea43fSLisandro Dalcin   DM              K;
305066ea43fSLisandro Dalcin   PetscSpace      P;
306066ea43fSLisandro Dalcin   PetscDualSpace  Q;
307066ea43fSLisandro Dalcin   PetscQuadrature q, fq;
308066ea43fSLisandro Dalcin   PetscInt        dim, deg, dof;
309066ea43fSLisandro Dalcin   DMPolytopeType  ptype;
310066ea43fSLisandro Dalcin   PetscBool       isSimplex, isTensor;
311066ea43fSLisandro Dalcin   PetscBool       continuity = PETSC_FALSE;
312066ea43fSLisandro Dalcin   PetscDTNodeType nodeType   = PETSCDTNODES_GAUSSJACOBI;
313066ea43fSLisandro Dalcin   PetscBool       endpoint   = PETSC_TRUE;
314066ea43fSLisandro Dalcin   MPI_Comm        comm;
315066ea43fSLisandro Dalcin 
316066ea43fSLisandro Dalcin   PetscFunctionBegin;
3179566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)femIn, &comm));
3189566063dSJacob Faibussowitsch   PetscCall(PetscFEGetBasisSpace(femIn, &P));
3199566063dSJacob Faibussowitsch   PetscCall(PetscFEGetDualSpace(femIn, &Q));
3209566063dSJacob Faibussowitsch   PetscCall(PetscDualSpaceGetDM(Q, &K));
3219566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(K, &dim));
3229566063dSJacob Faibussowitsch   PetscCall(PetscSpaceGetDegree(P, &deg, NULL));
3239566063dSJacob Faibussowitsch   PetscCall(PetscSpaceGetNumComponents(P, &dof));
3249566063dSJacob Faibussowitsch   PetscCall(DMPlexGetCellType(K, 0, &ptype));
325066ea43fSLisandro Dalcin   switch (ptype) {
326066ea43fSLisandro Dalcin   case DM_POLYTOPE_QUADRILATERAL:
3279371c9d4SSatish Balay   case DM_POLYTOPE_HEXAHEDRON: isSimplex = PETSC_FALSE; break;
3289371c9d4SSatish Balay   default: isSimplex = PETSC_TRUE; break;
329066ea43fSLisandro Dalcin   }
330066ea43fSLisandro Dalcin   isTensor = isSimplex ? PETSC_FALSE : PETSC_TRUE;
3310c2bc6bfSStefano Zampini   if (isSimplex) deg = PetscMin(deg, 3); /* Permutation not coded for degree higher than 3 */
332066ea43fSLisandro Dalcin   /* Create space */
3339566063dSJacob Faibussowitsch   PetscCall(PetscSpaceCreate(comm, &P));
3349566063dSJacob Faibussowitsch   PetscCall(PetscSpaceSetType(P, PETSCSPACEPOLYNOMIAL));
3359566063dSJacob Faibussowitsch   PetscCall(PetscSpacePolynomialSetTensor(P, isTensor));
3369566063dSJacob Faibussowitsch   PetscCall(PetscSpaceSetNumComponents(P, dof));
3379566063dSJacob Faibussowitsch   PetscCall(PetscSpaceSetNumVariables(P, dim));
3389566063dSJacob Faibussowitsch   PetscCall(PetscSpaceSetDegree(P, deg, PETSC_DETERMINE));
3399566063dSJacob Faibussowitsch   PetscCall(PetscSpaceSetUp(P));
340066ea43fSLisandro Dalcin   /* Create dual space */
3419566063dSJacob Faibussowitsch   PetscCall(PetscDualSpaceCreate(comm, &Q));
3429566063dSJacob Faibussowitsch   PetscCall(PetscDualSpaceSetType(Q, PETSCDUALSPACELAGRANGE));
3439566063dSJacob Faibussowitsch   PetscCall(PetscDualSpaceLagrangeSetTensor(Q, isTensor));
3449566063dSJacob Faibussowitsch   PetscCall(PetscDualSpaceLagrangeSetContinuity(Q, continuity));
3459566063dSJacob Faibussowitsch   PetscCall(PetscDualSpaceLagrangeSetNodeType(Q, nodeType, endpoint, 0));
3469566063dSJacob Faibussowitsch   PetscCall(PetscDualSpaceSetNumComponents(Q, dof));
3479566063dSJacob Faibussowitsch   PetscCall(PetscDualSpaceSetOrder(Q, deg));
3489566063dSJacob Faibussowitsch   PetscCall(DMPlexCreateReferenceCell(PETSC_COMM_SELF, DMPolytopeTypeSimpleShape(dim, isSimplex), &K));
3499566063dSJacob Faibussowitsch   PetscCall(PetscDualSpaceSetDM(Q, K));
3509566063dSJacob Faibussowitsch   PetscCall(DMDestroy(&K));
3519566063dSJacob Faibussowitsch   PetscCall(PetscDualSpaceSetUp(Q));
352066ea43fSLisandro Dalcin   /* Create quadrature */
353066ea43fSLisandro Dalcin   if (isSimplex) {
3549566063dSJacob Faibussowitsch     PetscCall(PetscDTStroudConicalQuadrature(dim, 1, deg + 1, -1, +1, &q));
3559566063dSJacob Faibussowitsch     PetscCall(PetscDTStroudConicalQuadrature(dim - 1, 1, deg + 1, -1, +1, &fq));
356066ea43fSLisandro Dalcin   } else {
3579566063dSJacob Faibussowitsch     PetscCall(PetscDTGaussTensorQuadrature(dim, 1, deg + 1, -1, +1, &q));
3589566063dSJacob Faibussowitsch     PetscCall(PetscDTGaussTensorQuadrature(dim - 1, 1, deg + 1, -1, +1, &fq));
359066ea43fSLisandro Dalcin   }
360066ea43fSLisandro Dalcin   /* Create finite element */
3619566063dSJacob Faibussowitsch   PetscCall(PetscFECreate(comm, fem));
36263a3b9bcSJacob Faibussowitsch   PetscCall(PetscSNPrintf(name, 32, "L2_T1_%" PetscInt_FMT "D_P%" PetscInt_FMT, dim, deg));
3639566063dSJacob Faibussowitsch   PetscCall(PetscObjectSetName((PetscObject)*fem, name));
3649566063dSJacob Faibussowitsch   PetscCall(PetscFESetType(*fem, PETSCFEBASIC));
3659566063dSJacob Faibussowitsch   PetscCall(PetscFESetNumComponents(*fem, dof));
3669566063dSJacob Faibussowitsch   PetscCall(PetscFESetBasisSpace(*fem, P));
3679566063dSJacob Faibussowitsch   PetscCall(PetscFESetDualSpace(*fem, Q));
3689566063dSJacob Faibussowitsch   PetscCall(PetscFESetQuadrature(*fem, q));
3699566063dSJacob Faibussowitsch   PetscCall(PetscFESetFaceQuadrature(*fem, fq));
3709566063dSJacob Faibussowitsch   PetscCall(PetscFESetUp(*fem));
3710c2bc6bfSStefano Zampini 
3720c2bc6bfSStefano Zampini   /* Both MFEM and PETSc are lexicographic, but PLEX stores the swapped cone */
3730c2bc6bfSStefano Zampini   *perm = NULL;
3740c2bc6bfSStefano Zampini   if (isSimplex && dim == 3) {
3750c2bc6bfSStefano Zampini     PetscInt celldofs, *pidx;
3760c2bc6bfSStefano Zampini 
3770c2bc6bfSStefano Zampini     PetscCall(PetscDualSpaceGetDimension(Q, &celldofs));
3780c2bc6bfSStefano Zampini     celldofs /= dof;
3790c2bc6bfSStefano Zampini     PetscCall(PetscMalloc1(celldofs, &pidx));
3800c2bc6bfSStefano Zampini     switch (celldofs) {
3810c2bc6bfSStefano Zampini     case 4:
3820c2bc6bfSStefano Zampini       pidx[0] = 2;
3830c2bc6bfSStefano Zampini       pidx[1] = 0;
3840c2bc6bfSStefano Zampini       pidx[2] = 1;
3850c2bc6bfSStefano Zampini       pidx[3] = 3;
3860c2bc6bfSStefano Zampini       break;
3870c2bc6bfSStefano Zampini     case 10:
3880c2bc6bfSStefano Zampini       pidx[0] = 5;
3890c2bc6bfSStefano Zampini       pidx[1] = 3;
3900c2bc6bfSStefano Zampini       pidx[2] = 0;
3910c2bc6bfSStefano Zampini       pidx[3] = 4;
3920c2bc6bfSStefano Zampini       pidx[4] = 1;
3930c2bc6bfSStefano Zampini       pidx[5] = 2;
3940c2bc6bfSStefano Zampini       pidx[6] = 8;
3950c2bc6bfSStefano Zampini       pidx[7] = 6;
3960c2bc6bfSStefano Zampini       pidx[8] = 7;
3970c2bc6bfSStefano Zampini       pidx[9] = 9;
3980c2bc6bfSStefano Zampini       break;
3990c2bc6bfSStefano Zampini     case 20:
4000c2bc6bfSStefano Zampini       pidx[0]  = 9;
4010c2bc6bfSStefano Zampini       pidx[1]  = 7;
4020c2bc6bfSStefano Zampini       pidx[2]  = 4;
4030c2bc6bfSStefano Zampini       pidx[3]  = 0;
4040c2bc6bfSStefano Zampini       pidx[4]  = 8;
4050c2bc6bfSStefano Zampini       pidx[5]  = 5;
4060c2bc6bfSStefano Zampini       pidx[6]  = 1;
4070c2bc6bfSStefano Zampini       pidx[7]  = 6;
4080c2bc6bfSStefano Zampini       pidx[8]  = 2;
4090c2bc6bfSStefano Zampini       pidx[9]  = 3;
4100c2bc6bfSStefano Zampini       pidx[10] = 15;
4110c2bc6bfSStefano Zampini       pidx[11] = 13;
4120c2bc6bfSStefano Zampini       pidx[12] = 10;
4130c2bc6bfSStefano Zampini       pidx[13] = 14;
4140c2bc6bfSStefano Zampini       pidx[14] = 11;
4150c2bc6bfSStefano Zampini       pidx[15] = 12;
4160c2bc6bfSStefano Zampini       pidx[16] = 18;
4170c2bc6bfSStefano Zampini       pidx[17] = 16;
4180c2bc6bfSStefano Zampini       pidx[18] = 17;
4190c2bc6bfSStefano Zampini       pidx[19] = 19;
4200c2bc6bfSStefano Zampini       break;
4219371c9d4SSatish Balay     default: SETERRQ(comm, PETSC_ERR_SUP, "Unhandled degree,dof pair %" PetscInt_FMT ",%" PetscInt_FMT, deg, celldofs); break;
4220c2bc6bfSStefano Zampini     }
4230c2bc6bfSStefano Zampini     PetscCall(ISCreateBlock(PETSC_COMM_SELF, dof, celldofs, pidx, PETSC_OWN_POINTER, perm));
4240c2bc6bfSStefano Zampini   }
4250c2bc6bfSStefano Zampini 
426066ea43fSLisandro Dalcin   /* Cleanup */
4279566063dSJacob Faibussowitsch   PetscCall(PetscSpaceDestroy(&P));
4289566063dSJacob Faibussowitsch   PetscCall(PetscDualSpaceDestroy(&Q));
4299566063dSJacob Faibussowitsch   PetscCall(PetscQuadratureDestroy(&q));
4309566063dSJacob Faibussowitsch   PetscCall(PetscQuadratureDestroy(&fq));
431066ea43fSLisandro Dalcin   PetscFunctionReturn(0);
432066ea43fSLisandro Dalcin }
433066ea43fSLisandro Dalcin 
43477eacf09SStefano Zampini /*
43577eacf09SStefano Zampini    ASCII visualization/dump: full support for simplices and tensor product cells. It supports AMR
43677eacf09SStefano Zampini    Higher order meshes are also supported
43777eacf09SStefano Zampini */
4389371c9d4SSatish Balay static PetscErrorCode DMPlexView_GLVis_ASCII(DM dm, PetscViewer viewer) {
4398135c375SStefano Zampini   DMLabel            label;
4406858538eSMatthew G. Knepley   PetscSection       coordSection, coordSectionCell, parentSection, hoSection = NULL;
4416858538eSMatthew G. Knepley   Vec                coordinates, coordinatesCell, hovec;
4428135c375SStefano Zampini   const PetscScalar *array;
443f86f7544SStefano Zampini   PetscInt           bf, p, sdim, dim, depth, novl, minl;
444412e9a14SMatthew G. Knepley   PetscInt           cStart, cEnd, vStart, vEnd, nvert;
4453924b612SStefano Zampini   PetscMPIInt        size;
4463e6c54aaSStefano Zampini   PetscBool          localized, isascii;
44728d58a37SPierre Jolivet   PetscBool          enable_mfem, enable_boundary, enable_ncmesh, view_ovl = PETSC_FALSE;
4483e6c54aaSStefano Zampini   PetscBT            pown, vown;
4498135c375SStefano Zampini   PetscContainer     glvis_container;
4506858538eSMatthew G. Knepley   PetscBool          cellvertex = PETSC_FALSE, enabled = PETSC_TRUE;
451f86f7544SStefano Zampini   PetscBool          enable_emark, enable_bmark;
45277eacf09SStefano Zampini   const char        *fmt;
4537bf4dd16SStefano Zampini   char               emark[64] = "", bmark[64] = "";
4548135c375SStefano Zampini 
4558135c375SStefano Zampini   PetscFunctionBegin;
4568135c375SStefano Zampini   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
4578135c375SStefano Zampini   PetscValidHeaderSpecific(viewer, PETSC_VIEWER_CLASSID, 2);
4589566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &isascii));
45928b400f6SJacob Faibussowitsch   PetscCheck(isascii, PetscObjectComm((PetscObject)viewer), PETSC_ERR_SUP, "Viewer must be of type VIEWERASCII");
4609566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)viewer), &size));
46108401ef6SPierre Jolivet   PetscCheck(size <= 1, PetscObjectComm((PetscObject)viewer), PETSC_ERR_SUP, "Use single sequential viewers for parallel visualization");
4629566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dm, &dim));
4630c2bc6bfSStefano Zampini   PetscCall(DMPlexGetDepth(dm, &depth));
4648135c375SStefano Zampini 
4658135c375SStefano Zampini   /* get container: determines if a process visualizes is portion of the data or not */
4669566063dSJacob Faibussowitsch   PetscCall(PetscObjectQuery((PetscObject)viewer, "_glvis_info_container", (PetscObject *)&glvis_container));
46728b400f6SJacob Faibussowitsch   PetscCheck(glvis_container, PetscObjectComm((PetscObject)dm), PETSC_ERR_PLIB, "Missing GLVis container");
4688135c375SStefano Zampini   {
4698135c375SStefano Zampini     PetscViewerGLVisInfo glvis_info;
4709566063dSJacob Faibussowitsch     PetscCall(PetscContainerGetPointer(glvis_container, (void **)&glvis_info));
4718135c375SStefano Zampini     enabled = glvis_info->enabled;
47277eacf09SStefano Zampini     fmt     = glvis_info->fmt;
4738135c375SStefano Zampini   }
47421414b21SStefano Zampini 
4750c2bc6bfSStefano Zampini   /* Users can attach a coordinate vector to the DM in case they have a higher-order mesh */
4769566063dSJacob Faibussowitsch   PetscCall(PetscObjectQuery((PetscObject)dm, "_glvis_mesh_coords", (PetscObject *)&hovec));
4779566063dSJacob Faibussowitsch   PetscCall(PetscObjectReference((PetscObject)hovec));
478066ea43fSLisandro Dalcin   if (!hovec) {
479066ea43fSLisandro Dalcin     DM           cdm;
480066ea43fSLisandro Dalcin     PetscFE      disc;
481066ea43fSLisandro Dalcin     PetscClassId classid;
482066ea43fSLisandro Dalcin 
4839566063dSJacob Faibussowitsch     PetscCall(DMGetCoordinateDM(dm, &cdm));
4849566063dSJacob Faibussowitsch     PetscCall(DMGetField(cdm, 0, NULL, (PetscObject *)&disc));
4859566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetClassId((PetscObject)disc, &classid));
486066ea43fSLisandro Dalcin     if (classid == PETSCFE_CLASSID) {
487066ea43fSLisandro Dalcin       DM      hocdm;
488066ea43fSLisandro Dalcin       PetscFE hodisc;
489066ea43fSLisandro Dalcin       Vec     vec;
490066ea43fSLisandro Dalcin       Mat     mat;
491066ea43fSLisandro Dalcin       char    name[32], fec_type[64];
4920c2bc6bfSStefano Zampini       IS      perm = NULL;
493066ea43fSLisandro Dalcin 
4940c2bc6bfSStefano Zampini       PetscCall(GLVisCreateFE(disc, name, &hodisc, &perm));
4959566063dSJacob Faibussowitsch       PetscCall(DMClone(cdm, &hocdm));
4969566063dSJacob Faibussowitsch       PetscCall(DMSetField(hocdm, 0, NULL, (PetscObject)hodisc));
4979566063dSJacob Faibussowitsch       PetscCall(PetscFEDestroy(&hodisc));
4989566063dSJacob Faibussowitsch       PetscCall(DMCreateDS(hocdm));
499066ea43fSLisandro Dalcin 
5009566063dSJacob Faibussowitsch       PetscCall(DMGetCoordinates(dm, &vec));
5019566063dSJacob Faibussowitsch       PetscCall(DMCreateGlobalVector(hocdm, &hovec));
5029566063dSJacob Faibussowitsch       PetscCall(DMCreateInterpolation(cdm, hocdm, &mat, NULL));
5039566063dSJacob Faibussowitsch       PetscCall(MatInterpolate(mat, vec, hovec));
5049566063dSJacob Faibussowitsch       PetscCall(MatDestroy(&mat));
5050c2bc6bfSStefano Zampini       PetscCall(DMGetLocalSection(hocdm, &hoSection));
5060c2bc6bfSStefano Zampini       PetscCall(PetscSectionSetClosurePermutation(hoSection, (PetscObject)hocdm, depth, perm));
5070c2bc6bfSStefano Zampini       PetscCall(ISDestroy(&perm));
5089566063dSJacob Faibussowitsch       PetscCall(DMDestroy(&hocdm));
5099566063dSJacob Faibussowitsch       PetscCall(PetscSNPrintf(fec_type, sizeof(fec_type), "FiniteElementCollection: %s", name));
5109566063dSJacob Faibussowitsch       PetscCall(PetscObjectSetName((PetscObject)hovec, fec_type));
511066ea43fSLisandro Dalcin     }
512066ea43fSLisandro Dalcin   }
51321414b21SStefano Zampini 
5149566063dSJacob Faibussowitsch   PetscCall(DMPlexGetHeightStratum(dm, 0, &cStart, &cEnd));
5159566063dSJacob Faibussowitsch   PetscCall(DMPlexGetGhostCellStratum(dm, &p, NULL));
516c3c203b2SStefano Zampini   if (p >= 0) cEnd = p;
5179566063dSJacob Faibussowitsch   PetscCall(DMPlexGetDepthStratum(dm, 0, &vStart, &vEnd));
5189566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinatesLocalized(dm, &localized));
5199566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateSection(dm, &coordSection));
5209566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateDim(dm, &sdim));
5219566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinatesLocal(dm, &coordinates));
52208401ef6SPierre Jolivet   PetscCheck(coordinates || hovec, PetscObjectComm((PetscObject)dm), PETSC_ERR_SUP, "Missing local coordinates vector");
5238135c375SStefano Zampini 
5248135c375SStefano Zampini   /*
5258135c375SStefano Zampini      a couple of sections of the mesh specification are disabled
5263e96840aSStefano Zampini        - boundary: the boundary is not needed for proper mesh visualization unless we want to visualize boundary attributes or we have high-order coordinates in 3D (topologically)
52777eacf09SStefano Zampini        - vertex_parents: used for non-conforming meshes only when we want to use MFEM as a discretization package
5283e6c54aaSStefano Zampini                          and be able to derefine the mesh (MFEM does not currently have to ability to read ncmeshes in parallel)
5298135c375SStefano Zampini   */
5303e96840aSStefano Zampini   enable_boundary = PETSC_FALSE;
5318135c375SStefano Zampini   enable_ncmesh   = PETSC_FALSE;
5323e6c54aaSStefano Zampini   enable_mfem     = PETSC_FALSE;
533f86f7544SStefano Zampini   enable_emark    = PETSC_FALSE;
534f86f7544SStefano Zampini   enable_bmark    = PETSC_FALSE;
5357bf4dd16SStefano Zampini   /* I'm tired of problems with negative values in the markers, disable them */
536d0609cedSBarry Smith   PetscOptionsBegin(PetscObjectComm((PetscObject)dm), ((PetscObject)dm)->prefix, "GLVis PetscViewer DMPlex Options", "PetscViewer");
5379566063dSJacob Faibussowitsch   PetscCall(PetscOptionsBool("-viewer_glvis_dm_plex_enable_boundary", "Enable boundary section in mesh representation", NULL, enable_boundary, &enable_boundary, NULL));
5389566063dSJacob Faibussowitsch   PetscCall(PetscOptionsBool("-viewer_glvis_dm_plex_enable_ncmesh", "Enable vertex_parents section in mesh representation (allows derefinement)", NULL, enable_ncmesh, &enable_ncmesh, NULL));
5399566063dSJacob Faibussowitsch   PetscCall(PetscOptionsBool("-viewer_glvis_dm_plex_enable_mfem", "Dump a mesh that can be used with MFEM's FiniteElementSpaces", NULL, enable_mfem, &enable_mfem, NULL));
5409566063dSJacob Faibussowitsch   PetscCall(PetscOptionsBool("-viewer_glvis_dm_plex_overlap", "Include overlap region in local meshes", NULL, view_ovl, &view_ovl, NULL));
5419566063dSJacob Faibussowitsch   PetscCall(PetscOptionsString("-viewer_glvis_dm_plex_emarker", "String for the material id label", NULL, emark, emark, sizeof(emark), &enable_emark));
5429566063dSJacob Faibussowitsch   PetscCall(PetscOptionsString("-viewer_glvis_dm_plex_bmarker", "String for the boundary id label", NULL, bmark, bmark, sizeof(bmark), &enable_bmark));
543d0609cedSBarry Smith   PetscOptionsEnd();
544f86f7544SStefano Zampini   if (enable_bmark) enable_boundary = PETSC_TRUE;
545f86f7544SStefano Zampini 
5469566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)dm), &size));
5471dca8a05SBarry Smith   PetscCheck(!enable_ncmesh || size == 1, PetscObjectComm((PetscObject)dm), PETSC_ERR_SUP, "Not supported in parallel");
5489371c9d4SSatish Balay   PetscCheck(!enable_boundary || depth < 0 || dim == depth, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG,
5499371c9d4SSatish Balay              "Mesh must be interpolated. "
5507e1aca4eSStefano Zampini              "Alternatively, run with -viewer_glvis_dm_plex_enable_boundary 0");
5519371c9d4SSatish Balay   PetscCheck(!enable_ncmesh || depth < 0 || dim == depth, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG,
5529371c9d4SSatish Balay              "Mesh must be interpolated. "
5537e1aca4eSStefano Zampini              "Alternatively, run with -viewer_glvis_dm_plex_enable_ncmesh 0");
554044a5661SStefano Zampini   if (depth >= 0 && dim != depth) { /* not interpolated, it assumes cell-vertex mesh */
55563a3b9bcSJacob Faibussowitsch     PetscCheck(depth == 1, PETSC_COMM_SELF, PETSC_ERR_SUP, "Unsupported depth %" PetscInt_FMT ". You should interpolate the mesh first", depth);
556044a5661SStefano Zampini     cellvertex = PETSC_TRUE;
557044a5661SStefano Zampini   }
5588135c375SStefano Zampini 
5598135c375SStefano Zampini   /* Identify possible cells in the overlap */
5608135c375SStefano Zampini   novl = 0;
5618135c375SStefano Zampini   pown = NULL;
5623924b612SStefano Zampini   if (size > 1) {
5633e6c54aaSStefano Zampini     IS              globalNum = NULL;
5643e6c54aaSStefano Zampini     const PetscInt *gNum;
5653e6c54aaSStefano Zampini     PetscBool       ovl = PETSC_FALSE;
5663e6c54aaSStefano Zampini 
5679566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)dm, "_glvis_plex_gnum", (PetscObject *)&globalNum));
568b135d7daSStefano Zampini     if (!globalNum) {
56928d58a37SPierre Jolivet       if (view_ovl) {
5709566063dSJacob Faibussowitsch         PetscCall(ISCreateStride(PetscObjectComm((PetscObject)dm), cEnd - cStart, 0, 1, &globalNum));
57128d58a37SPierre Jolivet       } else {
5729566063dSJacob Faibussowitsch         PetscCall(DMPlexCreateCellNumbering_Internal(dm, PETSC_TRUE, &globalNum));
57328d58a37SPierre Jolivet       }
5749566063dSJacob Faibussowitsch       PetscCall(PetscObjectCompose((PetscObject)dm, "_glvis_plex_gnum", (PetscObject)globalNum));
5759566063dSJacob Faibussowitsch       PetscCall(PetscObjectDereference((PetscObject)globalNum));
576b135d7daSStefano Zampini     }
5779566063dSJacob Faibussowitsch     PetscCall(ISGetIndices(globalNum, &gNum));
5788135c375SStefano Zampini     for (p = cStart; p < cEnd; p++) {
5798135c375SStefano Zampini       if (gNum[p - cStart] < 0) {
5808135c375SStefano Zampini         ovl = PETSC_TRUE;
5818135c375SStefano Zampini         novl++;
5828135c375SStefano Zampini       }
5838135c375SStefano Zampini     }
5848135c375SStefano Zampini     if (ovl) {
5858135c375SStefano Zampini       /* it may happen that pown get not destroyed, if the user closes the window while this function is running.
5868135c375SStefano Zampini          TODO: garbage collector? attach pown to dm?  */
5879566063dSJacob Faibussowitsch       PetscCall(PetscBTCreate(cEnd - cStart, &pown));
5883e6c54aaSStefano Zampini       for (p = cStart; p < cEnd; p++) {
5893e6c54aaSStefano Zampini         if (gNum[p - cStart] < 0) continue;
590*48a46eb9SPierre Jolivet         else PetscCall(PetscBTSet(pown, p - cStart));
5918135c375SStefano Zampini       }
5923e6c54aaSStefano Zampini     }
5939566063dSJacob Faibussowitsch     PetscCall(ISRestoreIndices(globalNum, &gNum));
5943e6c54aaSStefano Zampini   }
5958135c375SStefano Zampini 
5961d4815f0SStefano Zampini   /* vertex_parents (Non-conforming meshes) */
5971d4815f0SStefano Zampini   parentSection = NULL;
5981d4815f0SStefano Zampini   if (enable_ncmesh) {
5999566063dSJacob Faibussowitsch     PetscCall(DMPlexGetTree(dm, &parentSection, NULL, NULL, NULL, NULL));
6001d4815f0SStefano Zampini     enable_ncmesh = (PetscBool)(enable_ncmesh && parentSection);
6011d4815f0SStefano Zampini   }
6023e6c54aaSStefano Zampini   /* return if this process is disabled */
6038135c375SStefano Zampini   if (!enabled) {
6049566063dSJacob Faibussowitsch     PetscCall(PetscViewerASCIIPrintf(viewer, "MFEM mesh %s\n", enable_ncmesh ? "v1.1" : "v1.0"));
6059566063dSJacob Faibussowitsch     PetscCall(PetscViewerASCIIPrintf(viewer, "\ndimension\n"));
60663a3b9bcSJacob Faibussowitsch     PetscCall(PetscViewerASCIIPrintf(viewer, "%" PetscInt_FMT "\n", dim));
6079566063dSJacob Faibussowitsch     PetscCall(PetscViewerASCIIPrintf(viewer, "\nelements\n"));
60863a3b9bcSJacob Faibussowitsch     PetscCall(PetscViewerASCIIPrintf(viewer, "0\n"));
6099566063dSJacob Faibussowitsch     PetscCall(PetscViewerASCIIPrintf(viewer, "\nboundary\n"));
61063a3b9bcSJacob Faibussowitsch     PetscCall(PetscViewerASCIIPrintf(viewer, "0\n"));
6119566063dSJacob Faibussowitsch     PetscCall(PetscViewerASCIIPrintf(viewer, "\nvertices\n"));
61263a3b9bcSJacob Faibussowitsch     PetscCall(PetscViewerASCIIPrintf(viewer, "0\n"));
61363a3b9bcSJacob Faibussowitsch     PetscCall(PetscViewerASCIIPrintf(viewer, "%" PetscInt_FMT "\n", sdim));
6149566063dSJacob Faibussowitsch     PetscCall(PetscBTDestroy(&pown));
6159566063dSJacob Faibussowitsch     PetscCall(VecDestroy(&hovec));
6168135c375SStefano Zampini     PetscFunctionReturn(0);
6178135c375SStefano Zampini   }
6188135c375SStefano Zampini 
6193e6c54aaSStefano Zampini   if (enable_mfem) {
6206858538eSMatthew G. Knepley     if (localized && !hovec) { /* we need to generate a vector of L2 coordinates, as this is how MFEM handles periodic meshes */
6213e6c54aaSStefano Zampini       PetscInt     vpc = 0;
6223e6c54aaSStefano Zampini       char         fec[64];
62396ca5757SLisandro Dalcin       PetscInt     vids[8] = {0, 1, 2, 3, 4, 5, 6, 7};
62496ca5757SLisandro Dalcin       PetscInt     hexv[8] = {0, 1, 3, 2, 4, 5, 7, 6}, tetv[4] = {0, 1, 2, 3};
62596ca5757SLisandro Dalcin       PetscInt     quadv[8] = {0, 1, 3, 2}, triv[3] = {0, 1, 2};
62696ca5757SLisandro Dalcin       PetscInt    *dof = NULL;
6273e6c54aaSStefano Zampini       PetscScalar *array, *ptr;
6283e6c54aaSStefano Zampini 
62963a3b9bcSJacob Faibussowitsch       PetscCall(PetscSNPrintf(fec, sizeof(fec), "FiniteElementCollection: L2_T1_%" PetscInt_FMT "D_P1", dim));
6303e6c54aaSStefano Zampini       if (cEnd - cStart) {
6313e6c54aaSStefano Zampini         PetscInt fpc;
6323e6c54aaSStefano Zampini 
6339566063dSJacob Faibussowitsch         PetscCall(DMPlexGetConeSize(dm, cStart, &fpc));
6343e6c54aaSStefano Zampini         switch (dim) {
6353e6c54aaSStefano Zampini         case 1:
6363e6c54aaSStefano Zampini           vpc = 2;
6373e6c54aaSStefano Zampini           dof = hexv;
6383e6c54aaSStefano Zampini           break;
6393e6c54aaSStefano Zampini         case 2:
6403e6c54aaSStefano Zampini           switch (fpc) {
6413e6c54aaSStefano Zampini           case 3:
6423e6c54aaSStefano Zampini             vpc = 3;
643044a5661SStefano Zampini             dof = triv;
6443e6c54aaSStefano Zampini             break;
6453e6c54aaSStefano Zampini           case 4:
6463e6c54aaSStefano Zampini             vpc = 4;
647044a5661SStefano Zampini             dof = quadv;
6483e6c54aaSStefano Zampini             break;
6499371c9d4SSatish Balay           default: SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "Unhandled case: faces per cell %" PetscInt_FMT, fpc);
6503e6c54aaSStefano Zampini           }
6513e6c54aaSStefano Zampini           break;
6523e6c54aaSStefano Zampini         case 3:
6533e6c54aaSStefano Zampini           switch (fpc) {
654044a5661SStefano Zampini           case 4: /* TODO: still need to understand L2 ordering for tets */
6553e6c54aaSStefano Zampini             vpc = 4;
656044a5661SStefano Zampini             dof = tetv;
657044a5661SStefano Zampini             SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "Unhandled tethraedral case");
6583e6c54aaSStefano Zampini           case 6:
65963a3b9bcSJacob Faibussowitsch             PetscCheck(!cellvertex, PETSC_COMM_SELF, PETSC_ERR_SUP, "Unhandled case: vertices per cell %" PetscInt_FMT, fpc);
660044a5661SStefano Zampini             vpc = 8;
661044a5661SStefano Zampini             dof = hexv;
662044a5661SStefano Zampini             break;
663044a5661SStefano Zampini           case 8:
66463a3b9bcSJacob Faibussowitsch             PetscCheck(cellvertex, PETSC_COMM_SELF, PETSC_ERR_SUP, "Unhandled case: faces per cell %" PetscInt_FMT, fpc);
6653e6c54aaSStefano Zampini             vpc = 8;
6663e6c54aaSStefano Zampini             dof = hexv;
6673e6c54aaSStefano Zampini             break;
6689371c9d4SSatish Balay           default: SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "Unhandled case: faces per cell %" PetscInt_FMT, fpc);
6693e6c54aaSStefano Zampini           }
6703e6c54aaSStefano Zampini           break;
6719371c9d4SSatish Balay         default: SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_SUP, "Unhandled dim");
6723e6c54aaSStefano Zampini         }
6739566063dSJacob Faibussowitsch         PetscCall(DMPlexReorderCell(dm, cStart, vids));
6743e6c54aaSStefano Zampini       }
67528b400f6SJacob Faibussowitsch       PetscCheck(dof, PetscObjectComm((PetscObject)dm), PETSC_ERR_PLIB, "Missing dofs");
6769566063dSJacob Faibussowitsch       PetscCall(VecCreateSeq(PETSC_COMM_SELF, (cEnd - cStart - novl) * vpc * sdim, &hovec));
6779566063dSJacob Faibussowitsch       PetscCall(PetscObjectSetName((PetscObject)hovec, fec));
6789566063dSJacob Faibussowitsch       PetscCall(VecGetArray(hovec, &array));
6793e6c54aaSStefano Zampini       ptr = array;
6803e6c54aaSStefano Zampini       for (p = cStart; p < cEnd; p++) {
6813e6c54aaSStefano Zampini         PetscInt     csize, v, d;
6823e6c54aaSStefano Zampini         PetscScalar *vals = NULL;
6833e6c54aaSStefano Zampini 
6843e6c54aaSStefano Zampini         if (PetscUnlikely(pown && !PetscBTLookup(pown, p - cStart))) continue;
6859566063dSJacob Faibussowitsch         PetscCall(DMPlexVecGetClosure(dm, coordSection, coordinates, p, &csize, &vals));
6861dca8a05SBarry Smith         PetscCheck(csize == vpc * sdim || csize == vpc * sdim * 2, PETSC_COMM_SELF, PETSC_ERR_SUP, "Unsupported closure size %" PetscInt_FMT " (vpc %" PetscInt_FMT ", sdim %" PetscInt_FMT ")", csize, vpc, sdim);
6873e6c54aaSStefano Zampini         for (v = 0; v < vpc; v++) {
6889371c9d4SSatish Balay           for (d = 0; d < sdim; d++) { ptr[sdim * dof[v] + d] = vals[sdim * vids[v] + d]; }
6893e6c54aaSStefano Zampini         }
6903e6c54aaSStefano Zampini         ptr += vpc * sdim;
6919566063dSJacob Faibussowitsch         PetscCall(DMPlexVecRestoreClosure(dm, coordSection, coordinates, p, &csize, &vals));
6923e6c54aaSStefano Zampini       }
6939566063dSJacob Faibussowitsch       PetscCall(VecRestoreArray(hovec, &array));
6943e6c54aaSStefano Zampini     }
6953e6c54aaSStefano Zampini   }
6963e96840aSStefano Zampini   /* if we have high-order coordinates in 3D, we need to specify the boundary */
6973e96840aSStefano Zampini   if (hovec && dim == 3) enable_boundary = PETSC_TRUE;
6983e6c54aaSStefano Zampini 
6998135c375SStefano Zampini   /* header */
7009566063dSJacob Faibussowitsch   PetscCall(PetscViewerASCIIPrintf(viewer, "MFEM mesh %s\n", enable_ncmesh ? "v1.1" : "v1.0"));
7018135c375SStefano Zampini 
7028135c375SStefano Zampini   /* topological dimension */
7039566063dSJacob Faibussowitsch   PetscCall(PetscViewerASCIIPrintf(viewer, "\ndimension\n"));
70463a3b9bcSJacob Faibussowitsch   PetscCall(PetscViewerASCIIPrintf(viewer, "%" PetscInt_FMT "\n", dim));
7058135c375SStefano Zampini 
7068135c375SStefano Zampini   /* elements */
707f86f7544SStefano Zampini   minl  = 1;
708f86f7544SStefano Zampini   label = NULL;
709f86f7544SStefano Zampini   if (enable_emark) {
710f86f7544SStefano Zampini     PetscInt lminl = PETSC_MAX_INT;
711f86f7544SStefano Zampini 
7129566063dSJacob Faibussowitsch     PetscCall(DMGetLabel(dm, emark, &label));
713f86f7544SStefano Zampini     if (label) {
714f86f7544SStefano Zampini       IS       vals;
715f86f7544SStefano Zampini       PetscInt ldef;
716f86f7544SStefano Zampini 
7179566063dSJacob Faibussowitsch       PetscCall(DMLabelGetDefaultValue(label, &ldef));
7189566063dSJacob Faibussowitsch       PetscCall(DMLabelGetValueIS(label, &vals));
7199566063dSJacob Faibussowitsch       PetscCall(ISGetMinMax(vals, &lminl, NULL));
7209566063dSJacob Faibussowitsch       PetscCall(ISDestroy(&vals));
721f86f7544SStefano Zampini       lminl = PetscMin(ldef, lminl);
722f86f7544SStefano Zampini     }
7231c2dc1cbSBarry Smith     PetscCall(MPIU_Allreduce(&lminl, &minl, 1, MPIU_INT, MPI_MIN, PetscObjectComm((PetscObject)dm)));
724f86f7544SStefano Zampini     if (minl == PETSC_MAX_INT) minl = 1;
725f86f7544SStefano Zampini   }
7269566063dSJacob Faibussowitsch   PetscCall(PetscViewerASCIIPrintf(viewer, "\nelements\n"));
72763a3b9bcSJacob Faibussowitsch   PetscCall(PetscViewerASCIIPrintf(viewer, "%" PetscInt_FMT "\n", cEnd - cStart - novl));
7288135c375SStefano Zampini   for (p = cStart; p < cEnd; p++) {
72996ca5757SLisandro Dalcin     PetscInt vids[8];
73011a4995dSStefano Zampini     PetscInt i, nv = 0, cid = -1, mid = 1;
7318135c375SStefano Zampini 
7323e6c54aaSStefano Zampini     if (PetscUnlikely(pown && !PetscBTLookup(pown, p - cStart))) continue;
7339566063dSJacob Faibussowitsch     PetscCall(DMPlexGetPointMFEMCellID_Internal(dm, label, minl, p, &mid, &cid));
7349566063dSJacob Faibussowitsch     PetscCall(DMPlexGetPointMFEMVertexIDs_Internal(dm, p, (localized && !hovec) ? coordSection : NULL, &nv, vids));
7359566063dSJacob Faibussowitsch     PetscCall(DMPlexReorderCell(dm, p, vids));
73663a3b9bcSJacob Faibussowitsch     PetscCall(PetscViewerASCIIPrintf(viewer, "%" PetscInt_FMT " %" PetscInt_FMT, mid, cid));
737*48a46eb9SPierre Jolivet     for (i = 0; i < nv; i++) PetscCall(PetscViewerASCIIPrintf(viewer, " %" PetscInt_FMT, vids[i]));
7389566063dSJacob Faibussowitsch     PetscCall(PetscViewerASCIIPrintf(viewer, "\n"));
7398135c375SStefano Zampini   }
7408135c375SStefano Zampini 
741cc0d3ed7SStefano Zampini   /* boundary */
7429566063dSJacob Faibussowitsch   PetscCall(PetscViewerASCIIPrintf(viewer, "\nboundary\n"));
743cc0d3ed7SStefano Zampini   if (!enable_boundary) {
74463a3b9bcSJacob Faibussowitsch     PetscCall(PetscViewerASCIIPrintf(viewer, "0\n"));
745cc0d3ed7SStefano Zampini   } else {
74677eacf09SStefano Zampini     DMLabel  perLabel;
74777eacf09SStefano Zampini     PetscBT  bfaces;
748b135d7daSStefano Zampini     PetscInt fStart, fEnd, *fcells;
749cc0d3ed7SStefano Zampini 
7509566063dSJacob Faibussowitsch     PetscCall(DMPlexGetHeightStratum(dm, 1, &fStart, &fEnd));
7519566063dSJacob Faibussowitsch     PetscCall(PetscBTCreate(fEnd - fStart, &bfaces));
7529566063dSJacob Faibussowitsch     PetscCall(DMPlexGetMaxSizes(dm, NULL, &p));
7539566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(p, &fcells));
7549566063dSJacob Faibussowitsch     PetscCall(DMGetLabel(dm, "glvis_periodic_cut", &perLabel));
7556858538eSMatthew G. Knepley     if (!perLabel && localized) { /* this periodic cut can be moved up to DMPlex setup */
7569566063dSJacob Faibussowitsch       PetscCall(DMCreateLabel(dm, "glvis_periodic_cut"));
7579566063dSJacob Faibussowitsch       PetscCall(DMGetLabel(dm, "glvis_periodic_cut", &perLabel));
7589566063dSJacob Faibussowitsch       PetscCall(DMLabelSetDefaultValue(perLabel, 1));
7596858538eSMatthew G. Knepley       PetscCall(DMGetCellCoordinateSection(dm, &coordSectionCell));
7606858538eSMatthew G. Knepley       PetscCall(DMGetCellCoordinatesLocal(dm, &coordinatesCell));
76177eacf09SStefano Zampini       for (p = cStart; p < cEnd; p++) {
762c3c203b2SStefano Zampini         DMPolytopeType cellType;
763c3c203b2SStefano Zampini         PetscInt       dof;
764b135d7daSStefano Zampini 
7659566063dSJacob Faibussowitsch         PetscCall(DMPlexGetCellType(dm, p, &cellType));
7666858538eSMatthew G. Knepley         PetscCall(PetscSectionGetDof(coordSectionCell, p, &dof));
76777eacf09SStefano Zampini         if (dof) {
7686858538eSMatthew G. Knepley           PetscInt     uvpc, v, csize, csizeCell, cellClosureSize, *cellClosure = NULL, *vidxs = NULL;
7696858538eSMatthew G. Knepley           PetscScalar *vals = NULL, *valsCell = NULL;
770c3c203b2SStefano Zampini 
771c3c203b2SStefano Zampini           uvpc = DMPolytopeTypeGetNumVertices(cellType);
77263a3b9bcSJacob Faibussowitsch           PetscCheck(dof % sdim == 0, PETSC_COMM_SELF, PETSC_ERR_USER, "Incompatible number of cell dofs %" PetscInt_FMT " and space dimension %" PetscInt_FMT, dof, sdim);
7739566063dSJacob Faibussowitsch           PetscCall(DMPlexVecGetClosure(dm, coordSection, coordinates, p, &csize, &vals));
7746858538eSMatthew G. Knepley           PetscCall(DMPlexVecGetClosure(dm, coordSectionCell, coordinatesCell, p, &csizeCell, &valsCell));
7756858538eSMatthew G. Knepley           PetscCheck(csize == csizeCell, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "Cell %" PetscInt_FMT " has invalid localized coordinates", p);
7769566063dSJacob Faibussowitsch           PetscCall(DMPlexGetTransitiveClosure(dm, p, PETSC_TRUE, &cellClosureSize, &cellClosure));
77777eacf09SStefano Zampini           for (v = 0; v < cellClosureSize; v++)
77877eacf09SStefano Zampini             if (cellClosure[2 * v] >= vStart && cellClosure[2 * v] < vEnd) {
77977eacf09SStefano Zampini               vidxs = cellClosure + 2 * v;
78077eacf09SStefano Zampini               break;
78177eacf09SStefano Zampini             }
78228b400f6SJacob Faibussowitsch           PetscCheck(vidxs, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Missing vertices");
783b135d7daSStefano Zampini           for (v = 0; v < uvpc; v++) {
78477eacf09SStefano Zampini             PetscInt s;
785044a5661SStefano Zampini 
78677eacf09SStefano Zampini             for (s = 0; s < sdim; s++) {
787*48a46eb9SPierre Jolivet               if (PetscAbsScalar(vals[v * sdim + s] - valsCell[v * sdim + s]) > PETSC_MACHINE_EPSILON) PetscCall(DMLabelSetValue(perLabel, vidxs[2 * v], 2));
78877eacf09SStefano Zampini             }
78977eacf09SStefano Zampini           }
7909566063dSJacob Faibussowitsch           PetscCall(DMPlexRestoreTransitiveClosure(dm, p, PETSC_TRUE, &cellClosureSize, &cellClosure));
7919566063dSJacob Faibussowitsch           PetscCall(DMPlexVecRestoreClosure(dm, coordSection, coordinates, p, &csize, &vals));
7926858538eSMatthew G. Knepley           PetscCall(DMPlexVecRestoreClosure(dm, coordSectionCell, coordinatesCell, p, &csizeCell, &valsCell));
79377eacf09SStefano Zampini         }
79477eacf09SStefano Zampini       }
79577eacf09SStefano Zampini       if (dim > 1) {
796b135d7daSStefano Zampini         PetscInt eEnd, eStart;
797044a5661SStefano Zampini 
7989566063dSJacob Faibussowitsch         PetscCall(DMPlexGetDepthStratum(dm, 1, &eStart, &eEnd));
79977eacf09SStefano Zampini         for (p = eStart; p < eEnd; p++) {
80077eacf09SStefano Zampini           const PetscInt *cone;
80177eacf09SStefano Zampini           PetscInt        coneSize, i;
80277eacf09SStefano Zampini           PetscBool       ispe = PETSC_TRUE;
80377eacf09SStefano Zampini 
8049566063dSJacob Faibussowitsch           PetscCall(DMPlexGetCone(dm, p, &cone));
8059566063dSJacob Faibussowitsch           PetscCall(DMPlexGetConeSize(dm, p, &coneSize));
80677eacf09SStefano Zampini           for (i = 0; i < coneSize; i++) {
80777eacf09SStefano Zampini             PetscInt v;
80877eacf09SStefano Zampini 
8099566063dSJacob Faibussowitsch             PetscCall(DMLabelGetValue(perLabel, cone[i], &v));
81077eacf09SStefano Zampini             ispe = (PetscBool)(ispe && (v == 2));
81177eacf09SStefano Zampini           }
81277eacf09SStefano Zampini           if (ispe && coneSize) {
8133e96840aSStefano Zampini             PetscInt        ch, numChildren;
8143e96840aSStefano Zampini             const PetscInt *children;
8153e96840aSStefano Zampini 
8169566063dSJacob Faibussowitsch             PetscCall(DMLabelSetValue(perLabel, p, 2));
8179566063dSJacob Faibussowitsch             PetscCall(DMPlexGetTreeChildren(dm, p, &numChildren, &children));
818*48a46eb9SPierre Jolivet             for (ch = 0; ch < numChildren; ch++) PetscCall(DMLabelSetValue(perLabel, children[ch], 2));
81977eacf09SStefano Zampini           }
82077eacf09SStefano Zampini         }
82177eacf09SStefano Zampini         if (dim > 2) {
82277eacf09SStefano Zampini           for (p = fStart; p < fEnd; p++) {
82377eacf09SStefano Zampini             const PetscInt *cone;
82477eacf09SStefano Zampini             PetscInt        coneSize, i;
82577eacf09SStefano Zampini             PetscBool       ispe = PETSC_TRUE;
82677eacf09SStefano Zampini 
8279566063dSJacob Faibussowitsch             PetscCall(DMPlexGetCone(dm, p, &cone));
8289566063dSJacob Faibussowitsch             PetscCall(DMPlexGetConeSize(dm, p, &coneSize));
82977eacf09SStefano Zampini             for (i = 0; i < coneSize; i++) {
83077eacf09SStefano Zampini               PetscInt v;
83177eacf09SStefano Zampini 
8329566063dSJacob Faibussowitsch               PetscCall(DMLabelGetValue(perLabel, cone[i], &v));
83377eacf09SStefano Zampini               ispe = (PetscBool)(ispe && (v == 2));
83477eacf09SStefano Zampini             }
83577eacf09SStefano Zampini             if (ispe && coneSize) {
8363e96840aSStefano Zampini               PetscInt        ch, numChildren;
8373e96840aSStefano Zampini               const PetscInt *children;
8383e96840aSStefano Zampini 
8399566063dSJacob Faibussowitsch               PetscCall(DMLabelSetValue(perLabel, p, 2));
8409566063dSJacob Faibussowitsch               PetscCall(DMPlexGetTreeChildren(dm, p, &numChildren, &children));
841*48a46eb9SPierre Jolivet               for (ch = 0; ch < numChildren; ch++) PetscCall(DMLabelSetValue(perLabel, children[ch], 2));
84277eacf09SStefano Zampini             }
84377eacf09SStefano Zampini           }
84477eacf09SStefano Zampini         }
84577eacf09SStefano Zampini       }
84677eacf09SStefano Zampini     }
84777eacf09SStefano Zampini     for (p = fStart; p < fEnd; p++) {
84877eacf09SStefano Zampini       const PetscInt *support;
8498135c375SStefano Zampini       PetscInt        supportSize;
85077eacf09SStefano Zampini       PetscBool       isbf = PETSC_FALSE;
8518135c375SStefano Zampini 
8529566063dSJacob Faibussowitsch       PetscCall(DMPlexGetSupportSize(dm, p, &supportSize));
8533e6c54aaSStefano Zampini       if (pown) {
8548135c375SStefano Zampini         PetscBool has_owned = PETSC_FALSE, has_ghost = PETSC_FALSE;
85577eacf09SStefano Zampini         PetscInt  i;
85677eacf09SStefano Zampini 
8579566063dSJacob Faibussowitsch         PetscCall(DMPlexGetSupport(dm, p, &support));
85877eacf09SStefano Zampini         for (i = 0; i < supportSize; i++) {
85977eacf09SStefano Zampini           if (PetscLikely(PetscBTLookup(pown, support[i] - cStart))) has_owned = PETSC_TRUE;
86077eacf09SStefano Zampini           else has_ghost = PETSC_TRUE;
86177eacf09SStefano Zampini         }
86277eacf09SStefano Zampini         isbf = (PetscBool)((supportSize == 1 && has_owned) || (supportSize > 1 && has_owned && has_ghost));
86377eacf09SStefano Zampini       } else {
86477eacf09SStefano Zampini         isbf = (PetscBool)(supportSize == 1);
86577eacf09SStefano Zampini       }
86677eacf09SStefano Zampini       if (!isbf && perLabel) {
86777eacf09SStefano Zampini         const PetscInt *cone;
86877eacf09SStefano Zampini         PetscInt        coneSize, i;
86977eacf09SStefano Zampini 
8709566063dSJacob Faibussowitsch         PetscCall(DMPlexGetCone(dm, p, &cone));
8719566063dSJacob Faibussowitsch         PetscCall(DMPlexGetConeSize(dm, p, &coneSize));
87277eacf09SStefano Zampini         isbf = PETSC_TRUE;
87377eacf09SStefano Zampini         for (i = 0; i < coneSize; i++) {
87477eacf09SStefano Zampini           PetscInt v, d;
87577eacf09SStefano Zampini 
8769566063dSJacob Faibussowitsch           PetscCall(DMLabelGetValue(perLabel, cone[i], &v));
8779566063dSJacob Faibussowitsch           PetscCall(DMLabelGetDefaultValue(perLabel, &d));
87877eacf09SStefano Zampini           isbf = (PetscBool)(isbf && v != d);
87977eacf09SStefano Zampini         }
88077eacf09SStefano Zampini       }
8811baa6e33SBarry Smith       if (isbf) PetscCall(PetscBTSet(bfaces, p - fStart));
88277eacf09SStefano Zampini     }
88377eacf09SStefano Zampini     /* count boundary faces */
88477eacf09SStefano Zampini     for (p = fStart, bf = 0; p < fEnd; p++) {
88577eacf09SStefano Zampini       if (PetscUnlikely(PetscBTLookup(bfaces, p - fStart))) {
88677eacf09SStefano Zampini         const PetscInt *support;
88777eacf09SStefano Zampini         PetscInt        supportSize, c;
8888135c375SStefano Zampini 
8899566063dSJacob Faibussowitsch         PetscCall(DMPlexGetSupportSize(dm, p, &supportSize));
8909566063dSJacob Faibussowitsch         PetscCall(DMPlexGetSupport(dm, p, &support));
89177eacf09SStefano Zampini         for (c = 0; c < supportSize; c++) {
8923e96840aSStefano Zampini           const PetscInt *cone;
893b135d7daSStefano Zampini           PetscInt        cell, cl, coneSize;
8943e96840aSStefano Zampini 
8953e96840aSStefano Zampini           cell = support[c];
8963e96840aSStefano Zampini           if (pown && PetscUnlikely(!PetscBTLookup(pown, cell - cStart))) continue;
8979566063dSJacob Faibussowitsch           PetscCall(DMPlexGetCone(dm, cell, &cone));
8989566063dSJacob Faibussowitsch           PetscCall(DMPlexGetConeSize(dm, cell, &coneSize));
899b135d7daSStefano Zampini           for (cl = 0; cl < coneSize; cl++) {
9003e96840aSStefano Zampini             if (cone[cl] == p) {
9013e96840aSStefano Zampini               bf += 1;
9023e96840aSStefano Zampini               break;
9038135c375SStefano Zampini             }
90477eacf09SStefano Zampini           }
9053e96840aSStefano Zampini         }
9068135c375SStefano Zampini       }
9078135c375SStefano Zampini     }
908f86f7544SStefano Zampini     minl  = 1;
909f86f7544SStefano Zampini     label = NULL;
910f86f7544SStefano Zampini     if (enable_bmark) {
911f86f7544SStefano Zampini       PetscInt lminl = PETSC_MAX_INT;
912f86f7544SStefano Zampini 
9139566063dSJacob Faibussowitsch       PetscCall(DMGetLabel(dm, bmark, &label));
914f86f7544SStefano Zampini       if (label) {
915f86f7544SStefano Zampini         IS       vals;
916f86f7544SStefano Zampini         PetscInt ldef;
917f86f7544SStefano Zampini 
9189566063dSJacob Faibussowitsch         PetscCall(DMLabelGetDefaultValue(label, &ldef));
9199566063dSJacob Faibussowitsch         PetscCall(DMLabelGetValueIS(label, &vals));
9209566063dSJacob Faibussowitsch         PetscCall(ISGetMinMax(vals, &lminl, NULL));
9219566063dSJacob Faibussowitsch         PetscCall(ISDestroy(&vals));
922f86f7544SStefano Zampini         lminl = PetscMin(ldef, lminl);
923f86f7544SStefano Zampini       }
9241c2dc1cbSBarry Smith       PetscCall(MPIU_Allreduce(&lminl, &minl, 1, MPIU_INT, MPI_MIN, PetscObjectComm((PetscObject)dm)));
925f86f7544SStefano Zampini       if (minl == PETSC_MAX_INT) minl = 1;
926f86f7544SStefano Zampini     }
92763a3b9bcSJacob Faibussowitsch     PetscCall(PetscViewerASCIIPrintf(viewer, "%" PetscInt_FMT "\n", bf));
9288135c375SStefano Zampini     for (p = fStart; p < fEnd; p++) {
92977eacf09SStefano Zampini       if (PetscUnlikely(PetscBTLookup(bfaces, p - fStart))) {
9308135c375SStefano Zampini         const PetscInt *support;
93177eacf09SStefano Zampini         PetscInt        supportSize, c, nc = 0;
9328135c375SStefano Zampini 
9339566063dSJacob Faibussowitsch         PetscCall(DMPlexGetSupportSize(dm, p, &supportSize));
9349566063dSJacob Faibussowitsch         PetscCall(DMPlexGetSupport(dm, p, &support));
9353e6c54aaSStefano Zampini         if (pown) {
93677eacf09SStefano Zampini           for (c = 0; c < supportSize; c++) {
9379371c9d4SSatish Balay             if (PetscLikely(PetscBTLookup(pown, support[c] - cStart))) { fcells[nc++] = support[c]; }
9388135c375SStefano Zampini           }
9399371c9d4SSatish Balay         } else
9409371c9d4SSatish Balay           for (c = 0; c < supportSize; c++) fcells[nc++] = support[c];
94177eacf09SStefano Zampini         for (c = 0; c < nc; c++) {
942c3c203b2SStefano Zampini           const DMPolytopeType *faceTypes;
943c3c203b2SStefano Zampini           DMPolytopeType        cellType;
944c3c203b2SStefano Zampini           const PetscInt       *faceSizes, *cone;
945c3c203b2SStefano Zampini           PetscInt              vids[8], *faces, st, i, coneSize, cell, cl, nv, cid = -1, mid = -1;
9468135c375SStefano Zampini 
94777eacf09SStefano Zampini           cell = fcells[c];
9489566063dSJacob Faibussowitsch           PetscCall(DMPlexGetCone(dm, cell, &cone));
9499566063dSJacob Faibussowitsch           PetscCall(DMPlexGetConeSize(dm, cell, &coneSize));
950b135d7daSStefano Zampini           for (cl = 0; cl < coneSize; cl++)
9519371c9d4SSatish Balay             if (cone[cl] == p) break;
952b135d7daSStefano Zampini           if (cl == coneSize) continue;
9538135c375SStefano Zampini 
95477eacf09SStefano Zampini           /* face material id and type */
9559566063dSJacob Faibussowitsch           PetscCall(DMPlexGetPointMFEMCellID_Internal(dm, label, minl, p, &mid, &cid));
95663a3b9bcSJacob Faibussowitsch           PetscCall(PetscViewerASCIIPrintf(viewer, "%" PetscInt_FMT " %" PetscInt_FMT, mid, cid));
95777eacf09SStefano Zampini           /* vertex ids */
9589566063dSJacob Faibussowitsch           PetscCall(DMPlexGetCellType(dm, cell, &cellType));
9599566063dSJacob Faibussowitsch           PetscCall(DMPlexGetPointMFEMVertexIDs_Internal(dm, cell, (localized && !hovec) ? coordSection : NULL, &nv, vids));
9609566063dSJacob Faibussowitsch           PetscCall(DMPlexGetRawFaces_Internal(dm, cellType, vids, NULL, &faceTypes, &faceSizes, (const PetscInt **)&faces));
961c3c203b2SStefano Zampini           st = 0;
962c3c203b2SStefano Zampini           for (i = 0; i < cl; i++) st += faceSizes[i];
9639566063dSJacob Faibussowitsch           PetscCall(DMPlexInvertCell(faceTypes[cl], faces + st));
964*48a46eb9SPierre Jolivet           for (i = 0; i < faceSizes[cl]; i++) PetscCall(PetscViewerASCIIPrintf(viewer, " %" PetscInt_FMT, faces[st + i]));
9659566063dSJacob Faibussowitsch           PetscCall(PetscViewerASCIIPrintf(viewer, "\n"));
9669566063dSJacob Faibussowitsch           PetscCall(DMPlexRestoreRawFaces_Internal(dm, cellType, vids, NULL, &faceTypes, &faceSizes, (const PetscInt **)&faces));
9673e96840aSStefano Zampini           bf -= 1;
96877eacf09SStefano Zampini         }
9698135c375SStefano Zampini       }
9708135c375SStefano Zampini     }
97163a3b9bcSJacob Faibussowitsch     PetscCheck(!bf, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Remaining boundary faces %" PetscInt_FMT, bf);
9729566063dSJacob Faibussowitsch     PetscCall(PetscBTDestroy(&bfaces));
9739566063dSJacob Faibussowitsch     PetscCall(PetscFree(fcells));
9748135c375SStefano Zampini   }
9758135c375SStefano Zampini 
9768135c375SStefano Zampini   /* mark owned vertices */
9773e6c54aaSStefano Zampini   vown = NULL;
9783e6c54aaSStefano Zampini   if (pown) {
9799566063dSJacob Faibussowitsch     PetscCall(PetscBTCreate(vEnd - vStart, &vown));
9808135c375SStefano Zampini     for (p = cStart; p < cEnd; p++) {
9818135c375SStefano Zampini       PetscInt i, closureSize, *closure = NULL;
9828135c375SStefano Zampini 
9833e6c54aaSStefano Zampini       if (PetscUnlikely(!PetscBTLookup(pown, p - cStart))) continue;
9849566063dSJacob Faibussowitsch       PetscCall(DMPlexGetTransitiveClosure(dm, p, PETSC_TRUE, &closureSize, &closure));
9858135c375SStefano Zampini       for (i = 0; i < closureSize; i++) {
9868135c375SStefano Zampini         const PetscInt pp = closure[2 * i];
9878135c375SStefano Zampini 
988*48a46eb9SPierre Jolivet         if (pp >= vStart && pp < vEnd) PetscCall(PetscBTSet(vown, pp - vStart));
9898135c375SStefano Zampini       }
9909566063dSJacob Faibussowitsch       PetscCall(DMPlexRestoreTransitiveClosure(dm, p, PETSC_TRUE, &closureSize, &closure));
9918135c375SStefano Zampini     }
9928135c375SStefano Zampini   }
9938135c375SStefano Zampini 
9948135c375SStefano Zampini   if (parentSection) {
9958135c375SStefano Zampini     PetscInt vp, gvp;
9968135c375SStefano Zampini 
9978135c375SStefano Zampini     for (vp = 0, p = vStart; p < vEnd; p++) {
9988135c375SStefano Zampini       DMLabel  dlabel;
9998135c375SStefano Zampini       PetscInt parent, depth;
10008135c375SStefano Zampini 
10013e6c54aaSStefano Zampini       if (PetscUnlikely(vown && !PetscBTLookup(vown, p - vStart))) continue;
10029566063dSJacob Faibussowitsch       PetscCall(DMPlexGetDepthLabel(dm, &dlabel));
10039566063dSJacob Faibussowitsch       PetscCall(DMLabelGetValue(dlabel, p, &depth));
10049566063dSJacob Faibussowitsch       PetscCall(DMPlexGetTreeParent(dm, p, &parent, NULL));
10058135c375SStefano Zampini       if (parent != p) vp++;
10068135c375SStefano Zampini     }
10071c2dc1cbSBarry Smith     PetscCall(MPIU_Allreduce(&vp, &gvp, 1, MPIU_INT, MPI_SUM, PetscObjectComm((PetscObject)dm)));
10088135c375SStefano Zampini     if (gvp) {
10098135c375SStefano Zampini       PetscInt   maxsupp;
10108135c375SStefano Zampini       PetscBool *skip = NULL;
10118135c375SStefano Zampini 
10129566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPrintf(viewer, "\nvertex_parents\n"));
101363a3b9bcSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPrintf(viewer, "%" PetscInt_FMT "\n", vp));
10149566063dSJacob Faibussowitsch       PetscCall(DMPlexGetMaxSizes(dm, NULL, &maxsupp));
10159566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(maxsupp, &skip));
10168135c375SStefano Zampini       for (p = vStart; p < vEnd; p++) {
10178135c375SStefano Zampini         DMLabel  dlabel;
10188135c375SStefano Zampini         PetscInt parent;
10198135c375SStefano Zampini 
10203e6c54aaSStefano Zampini         if (PetscUnlikely(vown && !PetscBTLookup(vown, p - vStart))) continue;
10219566063dSJacob Faibussowitsch         PetscCall(DMPlexGetDepthLabel(dm, &dlabel));
10229566063dSJacob Faibussowitsch         PetscCall(DMPlexGetTreeParent(dm, p, &parent, NULL));
10238135c375SStefano Zampini         if (parent != p) {
102496ca5757SLisandro Dalcin           PetscInt        vids[8] = {-1, -1, -1, -1, -1, -1, -1, -1}; /* silent overzealous clang static analyzer */
10253924b612SStefano Zampini           PetscInt        i, nv, ssize, n, numChildren, depth = -1;
10268135c375SStefano Zampini           const PetscInt *children;
10273924b612SStefano Zampini 
10289566063dSJacob Faibussowitsch           PetscCall(DMPlexGetConeSize(dm, parent, &ssize));
10293924b612SStefano Zampini           switch (ssize) {
10308135c375SStefano Zampini           case 2: /* edge */
10318135c375SStefano Zampini             nv = 0;
10329566063dSJacob Faibussowitsch             PetscCall(DMPlexGetPointMFEMVertexIDs_Internal(dm, parent, localized ? coordSection : NULL, &nv, vids));
103363a3b9bcSJacob Faibussowitsch             PetscCall(PetscViewerASCIIPrintf(viewer, "%" PetscInt_FMT, p - vStart));
1034*48a46eb9SPierre Jolivet             for (i = 0; i < nv; i++) PetscCall(PetscViewerASCIIPrintf(viewer, " %" PetscInt_FMT, vids[i]));
10359566063dSJacob Faibussowitsch             PetscCall(PetscViewerASCIIPrintf(viewer, "\n"));
10368135c375SStefano Zampini             vp--;
10378135c375SStefano Zampini             break;
10388135c375SStefano Zampini           case 4: /* face */
10399566063dSJacob Faibussowitsch             PetscCall(DMPlexGetTreeChildren(dm, parent, &numChildren, &children));
10408135c375SStefano Zampini             for (n = 0; n < numChildren; n++) {
10419566063dSJacob Faibussowitsch               PetscCall(DMLabelGetValue(dlabel, children[n], &depth));
10428135c375SStefano Zampini               if (!depth) {
10438135c375SStefano Zampini                 const PetscInt *hvsupp, *hesupp, *cone;
10448135c375SStefano Zampini                 PetscInt        hvsuppSize, hesuppSize, coneSize;
1045451a39c7SStefano Zampini                 PetscInt        hv = children[n], he = -1, f;
10468135c375SStefano Zampini 
10479566063dSJacob Faibussowitsch                 PetscCall(PetscArrayzero(skip, maxsupp));
10489566063dSJacob Faibussowitsch                 PetscCall(DMPlexGetSupportSize(dm, hv, &hvsuppSize));
10499566063dSJacob Faibussowitsch                 PetscCall(DMPlexGetSupport(dm, hv, &hvsupp));
10508135c375SStefano Zampini                 for (i = 0; i < hvsuppSize; i++) {
10518135c375SStefano Zampini                   PetscInt ep;
10529566063dSJacob Faibussowitsch                   PetscCall(DMPlexGetTreeParent(dm, hvsupp[i], &ep, NULL));
10538135c375SStefano Zampini                   if (ep != hvsupp[i]) {
10548135c375SStefano Zampini                     he = hvsupp[i];
10558135c375SStefano Zampini                   } else {
10568135c375SStefano Zampini                     skip[i] = PETSC_TRUE;
10578135c375SStefano Zampini                   }
10588135c375SStefano Zampini                 }
105963a3b9bcSJacob Faibussowitsch                 PetscCheck(he != -1, PETSC_COMM_SELF, PETSC_ERR_SUP, "Vertex %" PetscInt_FMT " support size %" PetscInt_FMT ": hanging edge not found", hv, hvsuppSize);
10609566063dSJacob Faibussowitsch                 PetscCall(DMPlexGetCone(dm, he, &cone));
106196ca5757SLisandro Dalcin                 vids[0] = (cone[0] == hv) ? cone[1] : cone[0];
10629566063dSJacob Faibussowitsch                 PetscCall(DMPlexGetSupportSize(dm, he, &hesuppSize));
10639566063dSJacob Faibussowitsch                 PetscCall(DMPlexGetSupport(dm, he, &hesupp));
10648135c375SStefano Zampini                 for (f = 0; f < hesuppSize; f++) {
10658135c375SStefano Zampini                   PetscInt j;
10668135c375SStefano Zampini 
10679566063dSJacob Faibussowitsch                   PetscCall(DMPlexGetCone(dm, hesupp[f], &cone));
10689566063dSJacob Faibussowitsch                   PetscCall(DMPlexGetConeSize(dm, hesupp[f], &coneSize));
10698135c375SStefano Zampini                   for (j = 0; j < coneSize; j++) {
10708135c375SStefano Zampini                     PetscInt k;
10718135c375SStefano Zampini                     for (k = 0; k < hvsuppSize; k++) {
10728135c375SStefano Zampini                       if (hvsupp[k] == cone[j]) {
10738135c375SStefano Zampini                         skip[k] = PETSC_TRUE;
10748135c375SStefano Zampini                         break;
10758135c375SStefano Zampini                       }
10768135c375SStefano Zampini                     }
10778135c375SStefano Zampini                   }
10788135c375SStefano Zampini                 }
10798135c375SStefano Zampini                 for (i = 0; i < hvsuppSize; i++) {
10808135c375SStefano Zampini                   if (!skip[i]) {
10819566063dSJacob Faibussowitsch                     PetscCall(DMPlexGetCone(dm, hvsupp[i], &cone));
108296ca5757SLisandro Dalcin                     vids[1] = (cone[0] == hv) ? cone[1] : cone[0];
10838135c375SStefano Zampini                   }
10848135c375SStefano Zampini                 }
108563a3b9bcSJacob Faibussowitsch                 PetscCall(PetscViewerASCIIPrintf(viewer, "%" PetscInt_FMT, hv - vStart));
1086*48a46eb9SPierre Jolivet                 for (i = 0; i < 2; i++) PetscCall(PetscViewerASCIIPrintf(viewer, " %" PetscInt_FMT, vids[i] - vStart));
10879566063dSJacob Faibussowitsch                 PetscCall(PetscViewerASCIIPrintf(viewer, "\n"));
10888135c375SStefano Zampini                 vp--;
10898135c375SStefano Zampini               }
10908135c375SStefano Zampini             }
10918135c375SStefano Zampini             break;
10929371c9d4SSatish Balay           default: SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "Don't know how to deal with support size %" PetscInt_FMT, ssize);
10938135c375SStefano Zampini           }
10948135c375SStefano Zampini         }
10958135c375SStefano Zampini       }
10969566063dSJacob Faibussowitsch       PetscCall(PetscFree(skip));
10978135c375SStefano Zampini     }
109863a3b9bcSJacob Faibussowitsch     PetscCheck(!vp, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Unexpected %" PetscInt_FMT " hanging vertices", vp);
10998135c375SStefano Zampini   }
11009566063dSJacob Faibussowitsch   PetscCall(PetscBTDestroy(&vown));
11018135c375SStefano Zampini 
11028135c375SStefano Zampini   /* vertices */
110377eacf09SStefano Zampini   if (hovec) { /* higher-order meshes */
110477eacf09SStefano Zampini     const char *fec;
11050286d493SLisandro Dalcin     PetscInt    i, n, s;
11069566063dSJacob Faibussowitsch     PetscCall(PetscViewerASCIIPrintf(viewer, "\nvertices\n"));
110763a3b9bcSJacob Faibussowitsch     PetscCall(PetscViewerASCIIPrintf(viewer, "%" PetscInt_FMT "\n", vEnd - vStart));
11089566063dSJacob Faibussowitsch     PetscCall(PetscViewerASCIIPrintf(viewer, "nodes\n"));
11099566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetName((PetscObject)hovec, &fec));
11109566063dSJacob Faibussowitsch     PetscCall(PetscViewerASCIIPrintf(viewer, "FiniteElementSpace\n"));
11119566063dSJacob Faibussowitsch     PetscCall(PetscViewerASCIIPrintf(viewer, "%s\n", fec));
111263a3b9bcSJacob Faibussowitsch     PetscCall(PetscViewerASCIIPrintf(viewer, "VDim: %" PetscInt_FMT "\n", sdim));
11139566063dSJacob Faibussowitsch     PetscCall(PetscViewerASCIIPrintf(viewer, "Ordering: 1\n\n")); /*Ordering::byVDIM*/
11140c2bc6bfSStefano Zampini     if (hoSection) {
11150c2bc6bfSStefano Zampini       DM cdm;
11160c2bc6bfSStefano Zampini 
11170c2bc6bfSStefano Zampini       PetscCall(VecGetDM(hovec, &cdm));
11180c2bc6bfSStefano Zampini       for (p = cStart; p < cEnd; p++) {
11190c2bc6bfSStefano Zampini         PetscScalar *vals = NULL;
11200c2bc6bfSStefano Zampini         PetscInt     csize;
11210c2bc6bfSStefano Zampini 
11220c2bc6bfSStefano Zampini         if (PetscUnlikely(pown && !PetscBTLookup(pown, p - cStart))) continue;
11230c2bc6bfSStefano Zampini         PetscCall(DMPlexVecGetClosure(cdm, hoSection, hovec, p, &csize, &vals));
112463a3b9bcSJacob Faibussowitsch         PetscCheck(csize % sdim == 0, PETSC_COMM_SELF, PETSC_ERR_USER, "Size of closure %" PetscInt_FMT " incompatible with space dimension %" PetscInt_FMT, csize, sdim);
11250c2bc6bfSStefano Zampini         for (i = 0; i < csize / sdim; i++) {
1126*48a46eb9SPierre Jolivet           for (s = 0; s < sdim; s++) PetscCall(PetscViewerASCIIPrintf(viewer, fmt, (double)PetscRealPart(vals[i * sdim + s])));
11270c2bc6bfSStefano Zampini           PetscCall(PetscViewerASCIIPrintf(viewer, "\n"));
11280c2bc6bfSStefano Zampini         }
11290c2bc6bfSStefano Zampini         PetscCall(DMPlexVecRestoreClosure(cdm, hoSection, hovec, p, &csize, &vals));
11300c2bc6bfSStefano Zampini       }
11310c2bc6bfSStefano Zampini     } else {
11329566063dSJacob Faibussowitsch       PetscCall(VecGetArrayRead(hovec, &array));
11339566063dSJacob Faibussowitsch       PetscCall(VecGetLocalSize(hovec, &n));
113463a3b9bcSJacob Faibussowitsch       PetscCheck(n % sdim == 0, PETSC_COMM_SELF, PETSC_ERR_USER, "Size of local coordinate vector %" PetscInt_FMT " incompatible with space dimension %" PetscInt_FMT, n, sdim);
113577eacf09SStefano Zampini       for (i = 0; i < n / sdim; i++) {
1136*48a46eb9SPierre Jolivet         for (s = 0; s < sdim; s++) PetscCall(PetscViewerASCIIPrintf(viewer, fmt, (double)PetscRealPart(array[i * sdim + s])));
11379566063dSJacob Faibussowitsch         PetscCall(PetscViewerASCIIPrintf(viewer, "\n"));
113877eacf09SStefano Zampini       }
11399566063dSJacob Faibussowitsch       PetscCall(VecRestoreArrayRead(hovec, &array));
11400c2bc6bfSStefano Zampini     }
114177eacf09SStefano Zampini   } else {
11429566063dSJacob Faibussowitsch     PetscCall(VecGetLocalSize(coordinates, &nvert));
11439566063dSJacob Faibussowitsch     PetscCall(PetscViewerASCIIPrintf(viewer, "\nvertices\n"));
114463a3b9bcSJacob Faibussowitsch     PetscCall(PetscViewerASCIIPrintf(viewer, "%" PetscInt_FMT "\n", nvert / sdim));
114563a3b9bcSJacob Faibussowitsch     PetscCall(PetscViewerASCIIPrintf(viewer, "%" PetscInt_FMT "\n", sdim));
11469566063dSJacob Faibussowitsch     PetscCall(VecGetArrayRead(coordinates, &array));
1147cc0d3ed7SStefano Zampini     for (p = 0; p < nvert / sdim; p++) {
1148cc0d3ed7SStefano Zampini       PetscInt s;
1149cc0d3ed7SStefano Zampini       for (s = 0; s < sdim; s++) {
11503e96840aSStefano Zampini         PetscReal v = PetscRealPart(array[p * sdim + s]);
11513e96840aSStefano Zampini 
11529566063dSJacob Faibussowitsch         PetscCall(PetscViewerASCIIPrintf(viewer, fmt, PetscIsInfOrNanReal(v) ? 0.0 : (double)v));
11538135c375SStefano Zampini       }
11549566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPrintf(viewer, "\n"));
11558135c375SStefano Zampini     }
11569566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayRead(coordinates, &array));
115777eacf09SStefano Zampini   }
11580c2bc6bfSStefano Zampini   PetscCall(PetscBTDestroy(&pown));
11599566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&hovec));
11608135c375SStefano Zampini   PetscFunctionReturn(0);
11618135c375SStefano Zampini }
11628135c375SStefano Zampini 
11639371c9d4SSatish Balay PetscErrorCode DMPlexView_GLVis(DM dm, PetscViewer viewer) {
11648135c375SStefano Zampini   PetscFunctionBegin;
11659566063dSJacob Faibussowitsch   PetscCall(DMView_GLVis(dm, viewer, DMPlexView_GLVis_ASCII));
11668135c375SStefano Zampini   PetscFunctionReturn(0);
11678135c375SStefano Zampini }
1168