xref: /petsc/src/dm/impls/plex/plexglvis.c (revision b135d7da1353c49556e72aa5f8f9f2c852e7ce50)
18135c375SStefano Zampini #include <petsc/private/glvisviewerimpl.h>
28135c375SStefano Zampini #include <petsc/private/petscimpl.h>
38135c375SStefano Zampini #include <petsc/private/dmpleximpl.h>
48135c375SStefano Zampini #include <petscbt.h>
58135c375SStefano Zampini #include <petscdmplex.h>
68135c375SStefano Zampini #include <petscsf.h>
78135c375SStefano Zampini #include <petscds.h>
88135c375SStefano Zampini 
98135c375SStefano Zampini typedef struct {
108135c375SStefano Zampini   PetscInt   nf;
118135c375SStefano Zampini   VecScatter *scctx;
128135c375SStefano Zampini } GLVisViewerCtx;
138135c375SStefano Zampini 
148135c375SStefano Zampini static PetscErrorCode DestroyGLVisViewerCtx_Private(void *vctx)
158135c375SStefano Zampini {
168135c375SStefano Zampini   GLVisViewerCtx *ctx = (GLVisViewerCtx*)vctx;
178135c375SStefano Zampini   PetscInt       i;
188135c375SStefano Zampini   PetscErrorCode ierr;
198135c375SStefano Zampini 
208135c375SStefano Zampini   PetscFunctionBegin;
218135c375SStefano Zampini   for (i=0;i<ctx->nf;i++) {
228135c375SStefano Zampini     ierr = VecScatterDestroy(&ctx->scctx[i]);CHKERRQ(ierr);
238135c375SStefano Zampini   }
248135c375SStefano Zampini   ierr = PetscFree(ctx->scctx);CHKERRQ(ierr);
2551f51421SSatish Balay   ierr = PetscFree(vctx);CHKERRQ(ierr);
268135c375SStefano Zampini   PetscFunctionReturn(0);
278135c375SStefano Zampini }
288135c375SStefano Zampini 
298135c375SStefano Zampini static PetscErrorCode DMPlexSampleGLVisFields_Private(PetscObject oX, PetscInt nf, PetscObject oXfield[], void *vctx)
308135c375SStefano Zampini {
318135c375SStefano Zampini   GLVisViewerCtx *ctx = (GLVisViewerCtx*)vctx;
328135c375SStefano Zampini   PetscInt       f;
338135c375SStefano Zampini   PetscErrorCode ierr;
348135c375SStefano Zampini 
358135c375SStefano Zampini   PetscFunctionBegin;
368135c375SStefano Zampini   for (f=0;f<nf;f++) {
378135c375SStefano Zampini     ierr = VecScatterBegin(ctx->scctx[f],(Vec)oX,(Vec)oXfield[f],INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
388135c375SStefano Zampini     ierr = VecScatterEnd(ctx->scctx[f],(Vec)oX,(Vec)oXfield[f],INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
398135c375SStefano Zampini   }
408135c375SStefano Zampini   PetscFunctionReturn(0);
418135c375SStefano Zampini }
428135c375SStefano Zampini 
438135c375SStefano Zampini /* for FEM, it works for H1 fields only and extracts dofs at cell vertices, discarding any other dof */
448135c375SStefano Zampini PetscErrorCode DMSetUpGLVisViewer_Plex(PetscObject odm, PetscViewer viewer)
458135c375SStefano Zampini {
468135c375SStefano Zampini   DM             dm = (DM)odm;
474cac2994SStefano Zampini   Vec            xlocal,xfield,*Ufield;
488135c375SStefano Zampini   PetscDS        ds;
498135c375SStefano Zampini   IS             globalNum,isfield;
508135c375SStefano Zampini   PetscBT        vown;
518135c375SStefano Zampini   char           **fieldname = NULL,**fec_type = NULL;
528135c375SStefano Zampini   const PetscInt *gNum;
53bb77a09fSStefano Zampini   PetscInt       *nlocal,*bs,*idxs,*dims;
548135c375SStefano Zampini   PetscInt       f,maxfields,nfields,c,totc,totdofs,Nv,cum,i;
55*b135d7daSStefano Zampini   PetscInt       dim,cStart,cEnd,vStart,vEnd;
568135c375SStefano Zampini   GLVisViewerCtx *ctx;
578135c375SStefano Zampini   PetscSection   s;
588135c375SStefano Zampini   PetscErrorCode ierr;
598135c375SStefano Zampini 
608135c375SStefano Zampini   PetscFunctionBegin;
618135c375SStefano Zampini   ierr = DMGetDimension(dm,&dim);CHKERRQ(ierr);
628135c375SStefano Zampini   ierr = DMPlexGetDepthStratum(dm,0,&vStart,&vEnd);CHKERRQ(ierr);
638135c375SStefano Zampini   ierr = DMPlexGetHeightStratum(dm,0,&cStart,&cEnd);CHKERRQ(ierr);
64*b135d7daSStefano Zampini   ierr = PetscObjectQuery((PetscObject)dm,"_glvis_plex_gnum",(PetscObject*)&globalNum);CHKERRQ(ierr);
65*b135d7daSStefano Zampini   if (!globalNum) {
66*b135d7daSStefano Zampini     ierr = DMPlexCreateCellNumbering_Internal(dm,PETSC_TRUE,&globalNum);CHKERRQ(ierr);
67*b135d7daSStefano Zampini     ierr = PetscObjectCompose((PetscObject)dm,"_glvis_plex_gnum",(PetscObject)globalNum);CHKERRQ(ierr);
68*b135d7daSStefano Zampini     ierr = PetscObjectDereference((PetscObject)globalNum);CHKERRQ(ierr);
69*b135d7daSStefano Zampini   }
708135c375SStefano Zampini   ierr = ISGetIndices(globalNum,&gNum);CHKERRQ(ierr);
718135c375SStefano Zampini   ierr = PetscBTCreate(vEnd-vStart,&vown);CHKERRQ(ierr);
728135c375SStefano Zampini   for (c = cStart, totc = 0; c < cEnd; c++) {
738135c375SStefano Zampini     if (gNum[c-cStart] >= 0) {
748135c375SStefano Zampini       PetscInt i,numPoints,*points = NULL;
758135c375SStefano Zampini 
768135c375SStefano Zampini       totc++;
778135c375SStefano Zampini       ierr = DMPlexGetTransitiveClosure(dm,c,PETSC_TRUE,&numPoints,&points);CHKERRQ(ierr);
788135c375SStefano Zampini       for (i=0;i<numPoints*2;i+= 2) {
798135c375SStefano Zampini         if ((points[i] >= vStart) && (points[i] < vEnd)) {
808135c375SStefano Zampini           ierr = PetscBTSet(vown,points[i]-vStart);CHKERRQ(ierr);
818135c375SStefano Zampini         }
828135c375SStefano Zampini       }
838135c375SStefano Zampini       ierr = DMPlexRestoreTransitiveClosure(dm,c,PETSC_TRUE,&numPoints,&points);CHKERRQ(ierr);
848135c375SStefano Zampini     }
858135c375SStefano Zampini   }
8677eacf09SStefano Zampini   for (f=0,Nv=0;f<vEnd-vStart;f++) if (PetscLikely(PetscBTLookup(vown,f))) Nv++;
878135c375SStefano Zampini 
888135c375SStefano Zampini   ierr = DMCreateLocalVector(dm,&xlocal);CHKERRQ(ierr);
898135c375SStefano Zampini   ierr = VecGetLocalSize(xlocal,&totdofs);CHKERRQ(ierr);
90e87a4003SBarry Smith   ierr = DMGetSection(dm,&s);CHKERRQ(ierr);
918135c375SStefano Zampini   ierr = PetscSectionGetNumFields(s,&nfields);CHKERRQ(ierr);
928135c375SStefano Zampini   for (f=0,maxfields=0;f<nfields;f++) {
938135c375SStefano Zampini     PetscInt bs;
948135c375SStefano Zampini 
958135c375SStefano Zampini     ierr = PetscSectionGetFieldComponents(s,f,&bs);CHKERRQ(ierr);
968135c375SStefano Zampini     maxfields += bs;
978135c375SStefano Zampini   }
984cac2994SStefano Zampini   ierr = PetscCalloc7(maxfields,&fieldname,maxfields,&nlocal,maxfields,&bs,maxfields,&dims,maxfields,&fec_type,totdofs,&idxs,maxfields,&Ufield);CHKERRQ(ierr);
998135c375SStefano Zampini   ierr = PetscNew(&ctx);CHKERRQ(ierr);
1008135c375SStefano Zampini   ierr = PetscCalloc1(maxfields,&ctx->scctx);CHKERRQ(ierr);
1018135c375SStefano Zampini   ierr = DMGetDS(dm,&ds);CHKERRQ(ierr);
1028135c375SStefano Zampini   if (ds) {
1038135c375SStefano Zampini     for (f=0;f<nfields;f++) {
1048135c375SStefano Zampini       const char* fname;
1058135c375SStefano Zampini       char        name[256];
1068135c375SStefano Zampini       PetscObject disc;
1078135c375SStefano Zampini       size_t      len;
1088135c375SStefano Zampini 
1098135c375SStefano Zampini       ierr = PetscSectionGetFieldName(s,f,&fname);CHKERRQ(ierr);
1108135c375SStefano Zampini       ierr = PetscStrlen(fname,&len);CHKERRQ(ierr);
1118135c375SStefano Zampini       if (len) {
1128135c375SStefano Zampini         ierr = PetscStrcpy(name,fname);CHKERRQ(ierr);
1138135c375SStefano Zampini       } else {
114bfadf1d8SStefano Zampini         ierr = PetscSNPrintf(name,256,"Field%D",f);CHKERRQ(ierr);
1158135c375SStefano Zampini       }
1168135c375SStefano Zampini       ierr = PetscDSGetDiscretization(ds,f,&disc);CHKERRQ(ierr);
1178135c375SStefano Zampini       if (disc) {
1188135c375SStefano Zampini         PetscClassId id;
1198135c375SStefano Zampini         PetscInt     Nc;
1208135c375SStefano Zampini         char         fec[64];
1218135c375SStefano Zampini 
1228135c375SStefano Zampini         ierr = PetscObjectGetClassId(disc, &id);CHKERRQ(ierr);
1238135c375SStefano Zampini         if (id == PETSCFE_CLASSID) {
1248135c375SStefano Zampini           PetscFE            fem = (PetscFE)disc;
1258135c375SStefano Zampini           PetscDualSpace     sp;
1268135c375SStefano Zampini           PetscDualSpaceType spname;
1278135c375SStefano Zampini           PetscInt           order;
1288135c375SStefano Zampini           PetscBool          islag,continuous,H1 = PETSC_TRUE;
1298135c375SStefano Zampini 
1308135c375SStefano Zampini           ierr = PetscFEGetNumComponents(fem,&Nc);CHKERRQ(ierr);
1318135c375SStefano Zampini           ierr = PetscFEGetDualSpace(fem,&sp);CHKERRQ(ierr);
1328135c375SStefano Zampini           ierr = PetscDualSpaceGetType(sp,&spname);CHKERRQ(ierr);
1338135c375SStefano Zampini           ierr = PetscStrcmp(spname,PETSCDUALSPACELAGRANGE,&islag);CHKERRQ(ierr);
1348135c375SStefano Zampini           if (!islag) SETERRQ(PetscObjectComm((PetscObject)dm),PETSC_ERR_SUP,"Unsupported dual space");
1358135c375SStefano Zampini           ierr = PetscDualSpaceLagrangeGetContinuity(sp,&continuous);CHKERRQ(ierr);
1368135c375SStefano Zampini           if (!continuous) SETERRQ(PetscObjectComm((PetscObject)dm),PETSC_ERR_SUP,"Discontinuous space visualization currently unsupported");
1378135c375SStefano Zampini           ierr = PetscDualSpaceGetOrder(sp,&order);CHKERRQ(ierr);
1388135c375SStefano Zampini           if (continuous && order > 0) {
139bfadf1d8SStefano Zampini             ierr = PetscSNPrintf(fec,64,"FiniteElementCollection: H1_%DD_P1",dim);CHKERRQ(ierr);
1408135c375SStefano Zampini           } else {
1418135c375SStefano Zampini             H1   = PETSC_FALSE;
142bfadf1d8SStefano Zampini             ierr = PetscSNPrintf(fec,64,"FiniteElementCollection: L2_%DD_P%D",dim,order);CHKERRQ(ierr);
1438135c375SStefano Zampini           }
1448135c375SStefano Zampini           ierr = PetscStrallocpy(name,&fieldname[ctx->nf]);CHKERRQ(ierr);
1458135c375SStefano Zampini           bs[ctx->nf]   = Nc;
146bb77a09fSStefano Zampini           dims[ctx->nf] = dim;
1478135c375SStefano Zampini           if (H1) {
1488135c375SStefano Zampini             nlocal[ctx->nf] = Nc * Nv;
1498135c375SStefano Zampini             ierr = PetscStrallocpy(fec,&fec_type[ctx->nf]);CHKERRQ(ierr);
1508135c375SStefano Zampini             ierr = VecCreateSeq(PETSC_COMM_SELF,Nv*Nc,&xfield);CHKERRQ(ierr);
1518135c375SStefano Zampini             for (i=0,cum=0;i<vEnd-vStart;i++) {
1528135c375SStefano Zampini               PetscInt j,off;
1538135c375SStefano Zampini 
1548135c375SStefano Zampini               if (PetscUnlikely(!PetscBTLookup(vown,i))) continue;
1558135c375SStefano Zampini               ierr = PetscSectionGetFieldOffset(s,i+vStart,f,&off);CHKERRQ(ierr);
1568135c375SStefano Zampini               for (j=0;j<Nc;j++) idxs[cum++] = off + j;
1578135c375SStefano Zampini             }
1588135c375SStefano Zampini             ierr = ISCreateGeneral(PetscObjectComm((PetscObject)xlocal),Nv*Nc,idxs,PETSC_USE_POINTER,&isfield);CHKERRQ(ierr);
1598135c375SStefano Zampini           } else {
1608135c375SStefano Zampini             nlocal[ctx->nf] = Nc * totc;
1618135c375SStefano Zampini             ierr = PetscStrallocpy(fec,&fec_type[ctx->nf]);CHKERRQ(ierr);
1628135c375SStefano Zampini             ierr = VecCreateSeq(PETSC_COMM_SELF,Nc*totc,&xfield);CHKERRQ(ierr);
1638135c375SStefano Zampini             for (i=0,cum=0;i<cEnd-cStart;i++) {
1648135c375SStefano Zampini               PetscInt j,off;
1658135c375SStefano Zampini 
1668135c375SStefano Zampini               if (PetscUnlikely(gNum[i] < 0)) continue;
1678135c375SStefano Zampini               ierr = PetscSectionGetFieldOffset(s,i+cStart,f,&off);CHKERRQ(ierr);
1688135c375SStefano Zampini               for (j=0;j<Nc;j++) idxs[cum++] = off + j;
1698135c375SStefano Zampini             }
1708135c375SStefano Zampini             ierr = ISCreateGeneral(PetscObjectComm((PetscObject)xlocal),totc*Nc,idxs,PETSC_USE_POINTER,&isfield);CHKERRQ(ierr);
1718135c375SStefano Zampini           }
17235928de7SBarry Smith           ierr = VecScatterCreateWithData(xlocal,isfield,xfield,NULL,&ctx->scctx[ctx->nf]);CHKERRQ(ierr);
1738135c375SStefano Zampini           ierr = VecDestroy(&xfield);CHKERRQ(ierr);
1748135c375SStefano Zampini           ierr = ISDestroy(&isfield);CHKERRQ(ierr);
1758135c375SStefano Zampini           ctx->nf++;
1768135c375SStefano Zampini         } else if (id == PETSCFV_CLASSID) {
1778135c375SStefano Zampini           PetscInt c;
1788135c375SStefano Zampini 
1798135c375SStefano Zampini           ierr = PetscFVGetNumComponents((PetscFV)disc,&Nc);CHKERRQ(ierr);
180bfadf1d8SStefano Zampini           ierr = PetscSNPrintf(fec,64,"FiniteElementCollection: L2_%DD_P0",dim);CHKERRQ(ierr);
1818135c375SStefano Zampini           for (c = 0; c < Nc; c++) {
1828135c375SStefano Zampini             char comp[256];
183bfadf1d8SStefano Zampini             ierr = PetscSNPrintf(comp,256,"%s-Comp%D",name,c);CHKERRQ(ierr);
1848135c375SStefano Zampini             ierr = PetscStrallocpy(comp,&fieldname[ctx->nf]);CHKERRQ(ierr);
1858135c375SStefano Zampini             bs[ctx->nf] = 1; /* Does PetscFV support components with different block size? */
1868135c375SStefano Zampini             nlocal[ctx->nf] = totc;
187bb77a09fSStefano Zampini             dims[ctx->nf] = dim;
1888135c375SStefano Zampini             ierr = PetscStrallocpy(fec,&fec_type[ctx->nf]);CHKERRQ(ierr);
1898135c375SStefano Zampini             ierr = VecCreateSeq(PETSC_COMM_SELF,totc,&xfield);CHKERRQ(ierr);
1908135c375SStefano Zampini             for (i=0,cum=0;i<cEnd-cStart;i++) {
1918135c375SStefano Zampini               PetscInt off;
1928135c375SStefano Zampini 
1938135c375SStefano Zampini               if (PetscUnlikely(gNum[i])<0) continue;
1948135c375SStefano Zampini               ierr = PetscSectionGetFieldOffset(s,i+cStart,f,&off);CHKERRQ(ierr);
1958135c375SStefano Zampini               idxs[cum++] = off + c;
1968135c375SStefano Zampini             }
1978135c375SStefano Zampini             ierr = ISCreateGeneral(PetscObjectComm((PetscObject)xlocal),totc,idxs,PETSC_USE_POINTER,&isfield);CHKERRQ(ierr);
19835928de7SBarry Smith             ierr = VecScatterCreateWithData(xlocal,isfield,xfield,NULL,&ctx->scctx[ctx->nf]);CHKERRQ(ierr);
1998135c375SStefano Zampini             ierr = VecDestroy(&xfield);CHKERRQ(ierr);
2008135c375SStefano Zampini             ierr = ISDestroy(&isfield);CHKERRQ(ierr);
2018135c375SStefano Zampini             ctx->nf++;
2028135c375SStefano Zampini           }
2038135c375SStefano Zampini         } else SETERRQ1(PetscObjectComm((PetscObject)dm),PETSC_ERR_ARG_WRONG,"Unknown discretization type for field %D",f);
2048135c375SStefano Zampini       } else SETERRQ1(PetscObjectComm((PetscObject)dm),PETSC_ERR_SUP,"Missing discretization for field %D",f);
2058135c375SStefano Zampini     }
2068135c375SStefano Zampini   } else SETERRQ(PetscObjectComm((PetscObject)dm),PETSC_ERR_SUP,"Needs a DS attached to the DM");
2078135c375SStefano Zampini   ierr = PetscBTDestroy(&vown);CHKERRQ(ierr);
2088135c375SStefano Zampini   ierr = VecDestroy(&xlocal);CHKERRQ(ierr);
2098135c375SStefano Zampini   ierr = ISRestoreIndices(globalNum,&gNum);CHKERRQ(ierr);
2108135c375SStefano Zampini 
2114cac2994SStefano Zampini   /* create work vectors */
2124cac2994SStefano Zampini   for (f=0;f<ctx->nf;f++) {
2134cac2994SStefano Zampini     ierr = VecCreateMPI(PetscObjectComm((PetscObject)dm),nlocal[f],PETSC_DECIDE,&Ufield[f]);CHKERRQ(ierr);
2144cac2994SStefano Zampini     ierr = PetscObjectSetName((PetscObject)Ufield[f],fieldname[f]);CHKERRQ(ierr);
2154cac2994SStefano Zampini     ierr = VecSetBlockSize(Ufield[f],bs[f]);CHKERRQ(ierr);
2164cac2994SStefano Zampini     ierr = VecSetDM(Ufield[f],dm);CHKERRQ(ierr);
2174cac2994SStefano Zampini   }
2184cac2994SStefano Zampini 
2198135c375SStefano Zampini   /* customize the viewer */
2204cac2994SStefano Zampini   ierr = PetscViewerGLVisSetFields(viewer,ctx->nf,(const char**)fec_type,dims,DMPlexSampleGLVisFields_Private,(PetscObject*)Ufield,ctx,DestroyGLVisViewerCtx_Private);CHKERRQ(ierr);
2218135c375SStefano Zampini   for (f=0;f<ctx->nf;f++) {
2228135c375SStefano Zampini     ierr = PetscFree(fieldname[f]);CHKERRQ(ierr);
2238135c375SStefano Zampini     ierr = PetscFree(fec_type[f]);CHKERRQ(ierr);
2244cac2994SStefano Zampini     ierr = VecDestroy(&Ufield[f]);CHKERRQ(ierr);
2258135c375SStefano Zampini   }
2264cac2994SStefano Zampini   ierr = PetscFree7(fieldname,nlocal,bs,dims,fec_type,idxs,Ufield);CHKERRQ(ierr);
2278135c375SStefano Zampini   PetscFunctionReturn(0);
2288135c375SStefano Zampini }
2298135c375SStefano Zampini 
230*b135d7daSStefano Zampini typedef enum {MFEM_POINT=0,MFEM_SEGMENT,MFEM_TRIANGLE,MFEM_SQUARE,MFEM_TETRAHEDRON,MFEM_CUBE,MFEM_PRISM,MFEM_UNDEF} MFEM_cid;
2318135c375SStefano Zampini 
2328135c375SStefano Zampini MFEM_cid mfem_table_cid[4][7]       = { {MFEM_POINT,MFEM_UNDEF,MFEM_UNDEF  ,MFEM_UNDEF   ,MFEM_UNDEF      ,MFEM_UNDEF,MFEM_UNDEF},
2338135c375SStefano Zampini                                         {MFEM_POINT,MFEM_UNDEF,MFEM_SEGMENT,MFEM_UNDEF   ,MFEM_UNDEF      ,MFEM_UNDEF,MFEM_UNDEF},
2348135c375SStefano Zampini                                         {MFEM_POINT,MFEM_UNDEF,MFEM_SEGMENT,MFEM_TRIANGLE,MFEM_SQUARE     ,MFEM_UNDEF,MFEM_UNDEF},
235*b135d7daSStefano Zampini                                         {MFEM_POINT,MFEM_UNDEF,MFEM_SEGMENT,MFEM_UNDEF   ,MFEM_TETRAHEDRON,MFEM_PRISM,MFEM_CUBE } };
2368135c375SStefano Zampini 
237*b135d7daSStefano Zampini MFEM_cid mfem_table_cid_unint[4][9] = { {MFEM_POINT,MFEM_UNDEF,MFEM_UNDEF  ,MFEM_UNDEF   ,MFEM_UNDEF      ,MFEM_UNDEF,MFEM_PRISM,MFEM_UNDEF,MFEM_UNDEF},
238*b135d7daSStefano Zampini                                         {MFEM_POINT,MFEM_UNDEF,MFEM_SEGMENT,MFEM_UNDEF   ,MFEM_UNDEF      ,MFEM_UNDEF,MFEM_PRISM,MFEM_UNDEF,MFEM_UNDEF},
239*b135d7daSStefano Zampini                                         {MFEM_POINT,MFEM_UNDEF,MFEM_SEGMENT,MFEM_TRIANGLE,MFEM_SQUARE     ,MFEM_UNDEF,MFEM_PRISM,MFEM_UNDEF,MFEM_UNDEF},
240*b135d7daSStefano Zampini                                         {MFEM_POINT,MFEM_UNDEF,MFEM_SEGMENT,MFEM_UNDEF   ,MFEM_TETRAHEDRON,MFEM_UNDEF,MFEM_PRISM,MFEM_UNDEF,MFEM_CUBE } };
241044a5661SStefano Zampini 
242cc0d3ed7SStefano Zampini static PetscErrorCode DMPlexGetPointMFEMCellID_Internal(DM dm, DMLabel label, PetscInt p, PetscInt *mid, PetscInt *cid)
2438135c375SStefano Zampini {
2448135c375SStefano Zampini   DMLabel        dlabel;
245044a5661SStefano Zampini   PetscInt       depth,csize,pdepth,dim;
2468135c375SStefano Zampini   PetscErrorCode ierr;
2478135c375SStefano Zampini 
2488135c375SStefano Zampini   PetscFunctionBegin;
2498135c375SStefano Zampini   ierr = DMPlexGetDepthLabel(dm,&dlabel);CHKERRQ(ierr);
250044a5661SStefano Zampini   ierr = DMLabelGetValue(dlabel,p,&pdepth);CHKERRQ(ierr);
2518135c375SStefano Zampini   ierr = DMPlexGetConeSize(dm,p,&csize);CHKERRQ(ierr);
252044a5661SStefano Zampini   ierr = DMPlexGetDepth(dm,&depth);CHKERRQ(ierr);
253044a5661SStefano Zampini   ierr = DMGetDimension(dm,&dim);CHKERRQ(ierr);
2548135c375SStefano Zampini   if (label) {
2558135c375SStefano Zampini     ierr = DMLabelGetValue(label,p,mid);CHKERRQ(ierr);
25677eacf09SStefano Zampini   } else *mid = 1;
257044a5661SStefano Zampini   if (depth >=0 && dim != depth) { /* not interpolated, it assumes cell-vertex mesh */
258044a5661SStefano Zampini #if defined PETSC_USE_DEBUG
259044a5661SStefano Zampini     if (dim < 0 || dim > 3) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"Dimension %D",dim);
260044a5661SStefano Zampini     if (csize > 8) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_SUP,"Found cone size %D for point %D",csize,p);
261044a5661SStefano Zampini     if (depth != 1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_SUP,"Found depth %D for point %D. You should interpolate the mesh first",depth,p);
262044a5661SStefano Zampini #endif
263044a5661SStefano Zampini     *cid = mfem_table_cid_unint[dim][csize];
264044a5661SStefano Zampini   } else {
265044a5661SStefano Zampini #if defined PETSC_USE_DEBUG
266044a5661SStefano Zampini     if (csize > 6) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_SUP,"Cone size %D for point %D",csize,p);
267044a5661SStefano Zampini     if (pdepth < 0 || pdepth > 3) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_SUP,"Depth %D for point %D",csize,p);
268044a5661SStefano Zampini #endif
269044a5661SStefano Zampini     *cid = mfem_table_cid[pdepth][csize];
270044a5661SStefano Zampini   }
2718135c375SStefano Zampini   PetscFunctionReturn(0);
2728135c375SStefano Zampini }
2738135c375SStefano Zampini 
274cc0d3ed7SStefano Zampini static PetscErrorCode DMPlexGetPointMFEMVertexIDs_Internal(DM dm, PetscInt p, PetscSection csec, PetscInt *nv, int vids[])
2758135c375SStefano Zampini {
276cc0d3ed7SStefano Zampini   PetscInt       dim,sdim,dof = 0,off = 0,i,q,vStart,vEnd,numPoints,*points = NULL;
2778135c375SStefano Zampini   PetscErrorCode ierr;
2788135c375SStefano Zampini 
2798135c375SStefano Zampini   PetscFunctionBegin;
2808135c375SStefano Zampini   ierr = DMPlexGetDepthStratum(dm,0,&vStart,&vEnd);CHKERRQ(ierr);
281cc0d3ed7SStefano Zampini   ierr = DMGetDimension(dm,&dim);CHKERRQ(ierr);
282cc0d3ed7SStefano Zampini   sdim = dim;
283cc0d3ed7SStefano Zampini   if (csec) {
28484f354e3SLisandro Dalcin     PetscInt sStart,sEnd;
28584f354e3SLisandro Dalcin 
286cc0d3ed7SStefano Zampini     ierr = DMGetCoordinateDim(dm,&sdim);CHKERRQ(ierr);
28784f354e3SLisandro Dalcin     ierr = PetscSectionGetChart(csec,&sStart,&sEnd);CHKERRQ(ierr);
288cc0d3ed7SStefano Zampini     ierr = PetscSectionGetOffset(csec,vStart,&off);CHKERRQ(ierr);
289cc0d3ed7SStefano Zampini     off  = off/sdim;
29084f354e3SLisandro Dalcin     if (p >= sStart && p < sEnd) {
291cc0d3ed7SStefano Zampini       ierr = PetscSectionGetDof(csec,p,&dof);CHKERRQ(ierr);
292cc0d3ed7SStefano Zampini     }
29384f354e3SLisandro Dalcin   }
294cc0d3ed7SStefano Zampini   if (!dof) {
2958135c375SStefano Zampini     ierr = DMPlexGetTransitiveClosure(dm,p,PETSC_TRUE,&numPoints,&points);CHKERRQ(ierr);
2968135c375SStefano Zampini     for (i=0,q=0;i<numPoints*2;i+= 2)
2978135c375SStefano Zampini       if ((points[i] >= vStart) && (points[i] < vEnd))
2988183e3f6SStefano Zampini         vids[q++] = (int)(points[i]-vStart+off);
2998135c375SStefano Zampini     ierr = DMPlexRestoreTransitiveClosure(dm,p,PETSC_TRUE,&numPoints,&points);CHKERRQ(ierr);
300cc0d3ed7SStefano Zampini   } else {
301cc0d3ed7SStefano Zampini     ierr = PetscSectionGetOffset(csec,p,&off);CHKERRQ(ierr);
302cc0d3ed7SStefano Zampini     ierr = PetscSectionGetDof(csec,p,&dof);CHKERRQ(ierr);
3038183e3f6SStefano Zampini     for (q=0;q<dof/sdim;q++) vids[q] = (int)(off/sdim + q);
304cc0d3ed7SStefano Zampini   }
3058135c375SStefano Zampini   *nv = q;
3068135c375SStefano Zampini   PetscFunctionReturn(0);
3078135c375SStefano Zampini }
3088135c375SStefano Zampini 
309*b135d7daSStefano Zampini static PetscErrorCode DMPlexGlvisInvertHybrid(PetscInt cid,int vids[])
310*b135d7daSStefano Zampini {
311*b135d7daSStefano Zampini   int tmp;
312*b135d7daSStefano Zampini 
313*b135d7daSStefano Zampini   PetscFunctionBegin;
314*b135d7daSStefano Zampini   if (cid == MFEM_SQUARE) { /* PETSc stores hybrid quads not as counter-clockwise quad */
315*b135d7daSStefano Zampini     tmp     = vids[2];
316*b135d7daSStefano Zampini     vids[2] = vids[3];
317*b135d7daSStefano Zampini     vids[3] = tmp;
318*b135d7daSStefano Zampini   } else if (cid == MFEM_PRISM) { /* MFEM uses a different orientation for the base and top triangles of the wedge */
319*b135d7daSStefano Zampini     tmp     = vids[1];
320*b135d7daSStefano Zampini     vids[1] = vids[2];
321*b135d7daSStefano Zampini     vids[2] = tmp;
322*b135d7daSStefano Zampini     tmp     = vids[4];
323*b135d7daSStefano Zampini     vids[4] = vids[5];
324*b135d7daSStefano Zampini     vids[5] = tmp;
325*b135d7daSStefano Zampini   }
326*b135d7daSStefano Zampini   PetscFunctionReturn(0);
327*b135d7daSStefano Zampini }
328*b135d7daSStefano Zampini 
32977eacf09SStefano Zampini /*
33077eacf09SStefano Zampini    ASCII visualization/dump: full support for simplices and tensor product cells. It supports AMR
33177eacf09SStefano Zampini    Higher order meshes are also supported
33277eacf09SStefano Zampini */
3338135c375SStefano Zampini static PetscErrorCode DMPlexView_GLVis_ASCII(DM dm, PetscViewer viewer)
3348135c375SStefano Zampini {
3358135c375SStefano Zampini   DMLabel              label;
3368135c375SStefano Zampini   PetscSection         coordSection,parentSection;
33777eacf09SStefano Zampini   Vec                  coordinates,hovec;
3388135c375SStefano Zampini   const PetscScalar    *array;
3398135c375SStefano Zampini   PetscInt             bf,p,sdim,dim,depth,novl;
340cc0d3ed7SStefano Zampini   PetscInt             cStart,cEnd,cEndInterior,vStart,vEnd,nvert;
3413924b612SStefano Zampini   PetscMPIInt          size;
3423e6c54aaSStefano Zampini   PetscBool            localized,isascii;
3433e6c54aaSStefano Zampini   PetscBool            enable_mfem,enable_boundary,enable_ncmesh;
3443e6c54aaSStefano Zampini   PetscBT              pown,vown;
3458135c375SStefano Zampini   PetscErrorCode       ierr;
3468135c375SStefano Zampini   PetscContainer       glvis_container;
347044a5661SStefano Zampini   PetscBool            cellvertex = PETSC_FALSE, periodic, enabled = PETSC_TRUE;
34877eacf09SStefano Zampini   const char           *fmt;
3497bf4dd16SStefano Zampini   char                 emark[64] = "",bmark[64] = "";
3508135c375SStefano Zampini 
3518135c375SStefano Zampini   PetscFunctionBegin;
3528135c375SStefano Zampini   PetscValidHeaderSpecific(dm,DM_CLASSID,1);
3538135c375SStefano Zampini   PetscValidHeaderSpecific(viewer,PETSC_VIEWER_CLASSID,2);
3548135c375SStefano Zampini   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&isascii);CHKERRQ(ierr);
3558135c375SStefano Zampini   if (!isascii) SETERRQ(PetscObjectComm((PetscObject)viewer),PETSC_ERR_SUP,"Viewer must be of type VIEWERASCII");
3563924b612SStefano Zampini   ierr = MPI_Comm_size(PetscObjectComm((PetscObject)viewer),&size);CHKERRQ(ierr);
3573924b612SStefano Zampini   if (size > 1) SETERRQ(PetscObjectComm((PetscObject)viewer),PETSC_ERR_SUP,"Use single sequential viewers for parallel visualization");
3588135c375SStefano Zampini   ierr = DMGetDimension(dm,&dim);CHKERRQ(ierr);
3598135c375SStefano Zampini 
3608135c375SStefano Zampini   /* get container: determines if a process visualizes is portion of the data or not */
3618135c375SStefano Zampini   ierr = PetscObjectQuery((PetscObject)viewer,"_glvis_info_container",(PetscObject*)&glvis_container);CHKERRQ(ierr);
3628135c375SStefano Zampini   if (!glvis_container) SETERRQ(PetscObjectComm((PetscObject)dm),PETSC_ERR_PLIB,"Missing GLVis container");
3638135c375SStefano Zampini   {
3648135c375SStefano Zampini     PetscViewerGLVisInfo glvis_info;
3658135c375SStefano Zampini     ierr    = PetscContainerGetPointer(glvis_container,(void**)&glvis_info);CHKERRQ(ierr);
3668135c375SStefano Zampini     enabled = glvis_info->enabled;
36777eacf09SStefano Zampini     fmt     = glvis_info->fmt;
3688135c375SStefano Zampini   }
36921414b21SStefano Zampini 
37021414b21SStefano Zampini   /* Users can attach a coordinate vector to the DM in case they have a higher-order mesh
37121414b21SStefano Zampini      DMPlex does not currently support HO meshes, so there's no API for this */
37221414b21SStefano Zampini   ierr = PetscObjectQuery((PetscObject)dm,"_glvis_mesh_coords",(PetscObject*)&hovec);CHKERRQ(ierr);
37321414b21SStefano Zampini 
374cc0d3ed7SStefano Zampini   ierr = DMPlexGetHybridBounds(dm, &cEndInterior, NULL, NULL, NULL);CHKERRQ(ierr);
3758135c375SStefano Zampini   ierr = DMPlexGetHeightStratum(dm,0,&cStart,&cEnd);CHKERRQ(ierr);
376*b135d7daSStefano Zampini   cEndInterior = cEndInterior < 0 ? cEnd : cEndInterior;
3778135c375SStefano Zampini   ierr = DMPlexGetDepthStratum(dm,0,&vStart,&vEnd);CHKERRQ(ierr);
37877eacf09SStefano Zampini   ierr = DMGetPeriodicity(dm,&periodic,NULL,NULL,NULL);CHKERRQ(ierr);
379cc0d3ed7SStefano Zampini   ierr = DMGetCoordinatesLocalized(dm,&localized);CHKERRQ(ierr);
38021414b21SStefano Zampini   if (periodic && !localized && !hovec) SETERRQ(PetscObjectComm((PetscObject)dm),PETSC_ERR_SUP,"Coordinates need to be localized");
381cc0d3ed7SStefano Zampini   ierr = DMGetCoordinateSection(dm,&coordSection);CHKERRQ(ierr);
38277eacf09SStefano Zampini   ierr = DMGetCoordinateDim(dm,&sdim);CHKERRQ(ierr);
38377eacf09SStefano Zampini   ierr = DMGetCoordinatesLocal(dm,&coordinates);CHKERRQ(ierr);
38421414b21SStefano Zampini   if (!coordinates && !hovec) SETERRQ(PetscObjectComm((PetscObject)dm),PETSC_ERR_SUP,"Missing local coordinates vector");
3858135c375SStefano Zampini 
3868135c375SStefano Zampini   /*
3878135c375SStefano Zampini      a couple of sections of the mesh specification are disabled
3883e96840aSStefano Zampini        - boundary: the boundary is not needed for proper mesh visualization unless we want to visualize boundary attributes or we have high-order coordinates in 3D (topologically)
38977eacf09SStefano Zampini        - vertex_parents: used for non-conforming meshes only when we want to use MFEM as a discretization package
3903e6c54aaSStefano Zampini                          and be able to derefine the mesh (MFEM does not currently have to ability to read ncmeshes in parallel)
3918135c375SStefano Zampini   */
3923e96840aSStefano Zampini   enable_boundary = PETSC_FALSE;
3938135c375SStefano Zampini   enable_ncmesh   = PETSC_FALSE;
3943e6c54aaSStefano Zampini   enable_mfem     = PETSC_FALSE;
3957bf4dd16SStefano Zampini   /* I'm tired of problems with negative values in the markers, disable them */
3968135c375SStefano Zampini   ierr = PetscOptionsBegin(PetscObjectComm((PetscObject)dm),((PetscObject)dm)->prefix,"GLVis PetscViewer DMPlex Options","PetscViewer");CHKERRQ(ierr);
3973e6c54aaSStefano Zampini   ierr = PetscOptionsBool("-viewer_glvis_dm_plex_enable_boundary","Enable boundary section in mesh representation",NULL,enable_boundary,&enable_boundary,NULL);CHKERRQ(ierr);
3983e6c54aaSStefano Zampini   ierr = PetscOptionsBool("-viewer_glvis_dm_plex_enable_ncmesh","Enable vertex_parents section in mesh representation (allows derefinement)",NULL,enable_ncmesh,&enable_ncmesh,NULL);CHKERRQ(ierr);
3993e6c54aaSStefano Zampini   ierr = PetscOptionsBool("-viewer_glvis_dm_plex_enable_mfem","Dump a mesh that can be used with MFEM's FiniteElementSpaces",NULL,enable_mfem,&enable_mfem,NULL);CHKERRQ(ierr);
4007bf4dd16SStefano Zampini   ierr = PetscOptionsString("-viewer_glvis_dm_plex_emarker","String for the material id label",NULL,emark,emark,sizeof(emark),NULL);CHKERRQ(ierr);
4017bf4dd16SStefano Zampini   ierr = PetscOptionsString("-viewer_glvis_dm_plex_bmarker","String for the boundary id label",NULL,bmark,bmark,sizeof(bmark),NULL);CHKERRQ(ierr);
4028135c375SStefano Zampini   ierr = PetscOptionsEnd();CHKERRQ(ierr);
4033924b612SStefano Zampini   ierr = MPI_Comm_size(PetscObjectComm((PetscObject)dm),&size);CHKERRQ(ierr);
4043924b612SStefano Zampini   if (enable_ncmesh && size > 1) SETERRQ(PetscObjectComm((PetscObject)dm),PETSC_ERR_SUP,"Not supported in parallel");
4057e1aca4eSStefano Zampini   ierr = DMPlexGetDepth(dm,&depth);CHKERRQ(ierr);
4067e1aca4eSStefano Zampini   if (enable_boundary && depth >= 0 && dim != depth) SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Mesh must be interpolated. "
4077e1aca4eSStefano Zampini                                                              "Alternatively, run with -viewer_glvis_dm_plex_enable_boundary 0");
4087e1aca4eSStefano Zampini   if (enable_ncmesh && depth >= 0 && dim != depth) SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Mesh must be interpolated. "
4097e1aca4eSStefano Zampini                                                            "Alternatively, run with -viewer_glvis_dm_plex_enable_ncmesh 0");
410044a5661SStefano Zampini   if (depth >=0 && dim != depth) { /* not interpolated, it assumes cell-vertex mesh */
411044a5661SStefano Zampini     if (depth != 1) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"Unsupported depth %D. You should interpolate the mesh first",depth);
412044a5661SStefano Zampini     cellvertex = PETSC_TRUE;
413044a5661SStefano Zampini   }
4148135c375SStefano Zampini 
4158135c375SStefano Zampini   /* Identify possible cells in the overlap */
4168135c375SStefano Zampini   novl = 0;
4178135c375SStefano Zampini   pown = NULL;
4183924b612SStefano Zampini   if (size > 1) {
4193e6c54aaSStefano Zampini     IS             globalNum = NULL;
4203e6c54aaSStefano Zampini     const PetscInt *gNum;
4213e6c54aaSStefano Zampini     PetscBool      ovl  = PETSC_FALSE;
4223e6c54aaSStefano Zampini 
423*b135d7daSStefano Zampini     ierr = PetscObjectQuery((PetscObject)dm,"_glvis_plex_gnum",(PetscObject*)&globalNum);CHKERRQ(ierr);
424*b135d7daSStefano Zampini     if (!globalNum) {
425*b135d7daSStefano Zampini       ierr = DMPlexCreateCellNumbering_Internal(dm,PETSC_TRUE,&globalNum);CHKERRQ(ierr);
426*b135d7daSStefano Zampini       ierr = PetscObjectCompose((PetscObject)dm,"_glvis_plex_gnum",(PetscObject)globalNum);CHKERRQ(ierr);
427*b135d7daSStefano Zampini       ierr = PetscObjectDereference((PetscObject)globalNum);CHKERRQ(ierr);
428*b135d7daSStefano Zampini     }
4298135c375SStefano Zampini     ierr = ISGetIndices(globalNum,&gNum);CHKERRQ(ierr);
4308135c375SStefano Zampini     for (p=cStart; p<cEnd; p++) {
4318135c375SStefano Zampini       if (gNum[p-cStart] < 0) {
4328135c375SStefano Zampini         ovl = PETSC_TRUE;
4338135c375SStefano Zampini         novl++;
4348135c375SStefano Zampini       }
4358135c375SStefano Zampini     }
4368135c375SStefano Zampini     if (ovl) {
4378135c375SStefano Zampini       /* it may happen that pown get not destroyed, if the user closes the window while this function is running.
4388135c375SStefano Zampini          TODO: garbage collector? attach pown to dm?  */
4393e6c54aaSStefano Zampini       ierr = PetscBTCreate(cEnd-cStart,&pown);CHKERRQ(ierr);
4403e6c54aaSStefano Zampini       for (p=cStart; p<cEnd; p++) {
4413e6c54aaSStefano Zampini         if (gNum[p-cStart] < 0) continue;
4423e6c54aaSStefano Zampini         else {
4433e6c54aaSStefano Zampini           ierr = PetscBTSet(pown,p-cStart);CHKERRQ(ierr);
4448135c375SStefano Zampini         }
4458135c375SStefano Zampini       }
4463e6c54aaSStefano Zampini     }
4473e6c54aaSStefano Zampini     ierr = ISRestoreIndices(globalNum,&gNum);CHKERRQ(ierr);
4483e6c54aaSStefano Zampini   }
4498135c375SStefano Zampini 
4503e6c54aaSStefano Zampini   /* return if this process is disabled */
4518135c375SStefano Zampini   if (!enabled) {
4528135c375SStefano Zampini     ierr = PetscViewerASCIIPrintf(viewer,"MFEM mesh v1.1\n");CHKERRQ(ierr);
4538135c375SStefano Zampini     ierr = PetscViewerASCIIPrintf(viewer,"\ndimension\n");CHKERRQ(ierr);
4548135c375SStefano Zampini     ierr = PetscViewerASCIIPrintf(viewer,"%D\n",dim);CHKERRQ(ierr);
4558135c375SStefano Zampini     ierr = PetscViewerASCIIPrintf(viewer,"\nelements\n");CHKERRQ(ierr);
4568135c375SStefano Zampini     ierr = PetscViewerASCIIPrintf(viewer,"%D\n",0);CHKERRQ(ierr);
4578135c375SStefano Zampini     ierr = PetscViewerASCIIPrintf(viewer,"\nboundary\n");CHKERRQ(ierr);
4588135c375SStefano Zampini     ierr = PetscViewerASCIIPrintf(viewer,"%D\n",0);CHKERRQ(ierr);
4598135c375SStefano Zampini     ierr = PetscViewerASCIIPrintf(viewer,"\nvertices\n");CHKERRQ(ierr);
4608135c375SStefano Zampini     ierr = PetscViewerASCIIPrintf(viewer,"%D\n",0);CHKERRQ(ierr);
4618135c375SStefano Zampini     ierr = PetscViewerASCIIPrintf(viewer,"%D\n",sdim);CHKERRQ(ierr);
4628135c375SStefano Zampini     ierr = PetscBTDestroy(&pown);CHKERRQ(ierr);
4638135c375SStefano Zampini     PetscFunctionReturn(0);
4648135c375SStefano Zampini   }
4658135c375SStefano Zampini 
4663e6c54aaSStefano Zampini   if (enable_mfem) {
4673e6c54aaSStefano Zampini     if (periodic && !hovec) { /* we need to generate a vector of L2 coordinates, as this is how MFEM handles periodic meshes */
4683e6c54aaSStefano Zampini       PetscInt    vpc = 0;
4693e6c54aaSStefano Zampini       char        fec[64];
4703e6c54aaSStefano Zampini       int         vids[8] = {0,1,2,3,4,5,6,7};
471044a5661SStefano Zampini       int         hexv[8] = {0,1,3,2,4,5,7,6}, tetv[4] = {0,1,2,3};
472044a5661SStefano Zampini       int         quadv[8] = {0,1,3,2}, triv[3] = {0,1,2};
473044a5661SStefano Zampini       int         *dof = NULL;
4743e6c54aaSStefano Zampini       PetscScalar *array,*ptr;
4753e6c54aaSStefano Zampini 
476bfadf1d8SStefano Zampini       ierr = PetscSNPrintf(fec,sizeof(fec),"FiniteElementCollection: L2_T1_%DD_P1",dim);CHKERRQ(ierr);
477*b135d7daSStefano Zampini       if (cEndInterior < cEnd) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Support for hybrid meshed not currently implemented");
4783e6c54aaSStefano Zampini       if (cEnd-cStart) {
4793e6c54aaSStefano Zampini         PetscInt fpc;
4803e6c54aaSStefano Zampini 
4813e6c54aaSStefano Zampini         ierr = DMPlexGetConeSize(dm,cStart,&fpc);CHKERRQ(ierr);
4823e6c54aaSStefano Zampini         switch(dim) {
4833e6c54aaSStefano Zampini           case 1:
4843e6c54aaSStefano Zampini             vpc = 2;
4853e6c54aaSStefano Zampini             dof = hexv;
4863e6c54aaSStefano Zampini             break;
4873e6c54aaSStefano Zampini           case 2:
4883e6c54aaSStefano Zampini             switch (fpc) {
4893e6c54aaSStefano Zampini               case 3:
4903e6c54aaSStefano Zampini                 vpc = 3;
491044a5661SStefano Zampini                 dof = triv;
4923e6c54aaSStefano Zampini                 break;
4933e6c54aaSStefano Zampini               case 4:
4943e6c54aaSStefano Zampini                 vpc = 4;
495044a5661SStefano Zampini                 dof = quadv;
4963e6c54aaSStefano Zampini                 break;
4973e6c54aaSStefano Zampini               default:
4983e6c54aaSStefano Zampini                 SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"Unhandled case: faces per cell %D",fpc);
4993e6c54aaSStefano Zampini                 break;
5003e6c54aaSStefano Zampini             }
5013e6c54aaSStefano Zampini             break;
5023e6c54aaSStefano Zampini           case 3:
5033e6c54aaSStefano Zampini             switch (fpc) {
504044a5661SStefano Zampini               case 4: /* TODO: still need to understand L2 ordering for tets */
5053e6c54aaSStefano Zampini                 vpc = 4;
506044a5661SStefano Zampini                 dof = tetv;
507044a5661SStefano Zampini                 SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Unhandled tethraedral case");
5083e6c54aaSStefano Zampini                 break;
5093e6c54aaSStefano Zampini               case 6:
510044a5661SStefano Zampini                 if (cellvertex) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"Unhandled case: vertices per cell %D",fpc);
511044a5661SStefano Zampini                 vpc = 8;
512044a5661SStefano Zampini                 dof = hexv;
513044a5661SStefano Zampini                 break;
514044a5661SStefano Zampini               case 8:
515044a5661SStefano Zampini                 if (!cellvertex) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"Unhandled case: faces per cell %D",fpc);
5163e6c54aaSStefano Zampini                 vpc = 8;
5173e6c54aaSStefano Zampini                 dof = hexv;
5183e6c54aaSStefano Zampini                 break;
5193e6c54aaSStefano Zampini               default:
5203e6c54aaSStefano Zampini                 SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"Unhandled case: faces per cell %D",fpc);
5213e6c54aaSStefano Zampini                 break;
5223e6c54aaSStefano Zampini             }
5233e6c54aaSStefano Zampini             break;
5243e6c54aaSStefano Zampini           default:
5253e6c54aaSStefano Zampini             SETERRQ(PetscObjectComm((PetscObject)dm),PETSC_ERR_SUP,"Unhandled dim");
5263e6c54aaSStefano Zampini             break;
5273e6c54aaSStefano Zampini         }
5283e6c54aaSStefano Zampini         ierr = DMPlexInvertCell(dim,vpc,vids);CHKERRQ(ierr);
5293e6c54aaSStefano Zampini       }
530044a5661SStefano Zampini       if (!dof) SETERRQ(PetscObjectComm((PetscObject)dm),PETSC_ERR_PLIB,"Missing dofs");
5313e6c54aaSStefano Zampini       ierr = VecCreateSeq(PETSC_COMM_SELF,(cEnd-cStart-novl)*vpc*sdim,&hovec);CHKERRQ(ierr);
5323e6c54aaSStefano Zampini       ierr = PetscObjectCompose((PetscObject)dm,"_glvis_mesh_coords",(PetscObject)hovec);CHKERRQ(ierr);
5333e6c54aaSStefano Zampini       ierr = PetscObjectDereference((PetscObject)hovec);CHKERRQ(ierr);
5343e6c54aaSStefano Zampini       ierr = PetscObjectSetName((PetscObject)hovec,fec);CHKERRQ(ierr);
5353e6c54aaSStefano Zampini       ierr = VecGetArray(hovec,&array);CHKERRQ(ierr);
5363e6c54aaSStefano Zampini       ptr  = array;
5373e6c54aaSStefano Zampini       for (p=cStart;p<cEnd;p++) {
5383e6c54aaSStefano Zampini         PetscInt    csize,v,d;
5393e6c54aaSStefano Zampini         PetscScalar *vals = NULL;
5403e6c54aaSStefano Zampini 
5413e6c54aaSStefano Zampini         if (PetscUnlikely(pown && !PetscBTLookup(pown,p-cStart))) continue;
5423e6c54aaSStefano Zampini         ierr = DMPlexVecGetClosure(dm,coordSection,coordinates,p,&csize,&vals);CHKERRQ(ierr);
5433e6c54aaSStefano Zampini         if (csize != vpc*sdim && csize != vpc*sdim*2) SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_SUP,"Unsupported closure size %D (vpc %D, sdim %D)",csize,vpc,sdim);
5443e6c54aaSStefano Zampini         for (v=0;v<vpc;v++) {
5453e6c54aaSStefano Zampini           for (d=0;d<sdim;d++) {
5463e6c54aaSStefano Zampini             ptr[sdim*dof[v]+d] = vals[sdim*vids[v]+d];
5473e6c54aaSStefano Zampini           }
5483e6c54aaSStefano Zampini         }
5493e6c54aaSStefano Zampini         ptr += vpc*sdim;
5503e6c54aaSStefano Zampini         ierr = DMPlexVecRestoreClosure(dm,coordSection,coordinates,p,&csize,&vals);CHKERRQ(ierr);
5513e6c54aaSStefano Zampini       }
5523e6c54aaSStefano Zampini       ierr = VecRestoreArray(hovec,&array);CHKERRQ(ierr);
5533e6c54aaSStefano Zampini     }
5543e6c54aaSStefano Zampini   }
5553e96840aSStefano Zampini   /* if we have high-order coordinates in 3D, we need to specify the boundary */
5563e96840aSStefano Zampini   if (hovec && dim == 3) enable_boundary = PETSC_TRUE;
5573e6c54aaSStefano Zampini 
5588135c375SStefano Zampini   /* header */
5598135c375SStefano Zampini   ierr = PetscViewerASCIIPrintf(viewer,"MFEM mesh v1.1\n");CHKERRQ(ierr);
5608135c375SStefano Zampini 
5618135c375SStefano Zampini   /* topological dimension */
5628135c375SStefano Zampini   ierr = PetscViewerASCIIPrintf(viewer,"\ndimension\n");CHKERRQ(ierr);
5638135c375SStefano Zampini   ierr = PetscViewerASCIIPrintf(viewer,"%D\n",dim);CHKERRQ(ierr);
5648135c375SStefano Zampini 
5658135c375SStefano Zampini   /* elements */
5667bf4dd16SStefano Zampini   ierr = DMGetLabel(dm,emark,&label);CHKERRQ(ierr);
5678135c375SStefano Zampini   ierr = PetscViewerASCIIPrintf(viewer,"\nelements\n");CHKERRQ(ierr);
5688135c375SStefano Zampini   ierr = PetscViewerASCIIPrintf(viewer,"%D\n",cEnd-cStart-novl);CHKERRQ(ierr);
5698135c375SStefano Zampini   for (p=cStart;p<cEnd;p++) {
57011a4995dSStefano Zampini     int      vids[8];
57111a4995dSStefano Zampini     PetscInt i,nv = 0,cid = -1,mid = 1;
5728135c375SStefano Zampini 
5733e6c54aaSStefano Zampini     if (PetscUnlikely(pown && !PetscBTLookup(pown,p-cStart))) continue;
5748135c375SStefano Zampini     ierr = DMPlexGetPointMFEMCellID_Internal(dm,label,p,&mid,&cid);CHKERRQ(ierr);
57577eacf09SStefano Zampini     ierr = DMPlexGetPointMFEMVertexIDs_Internal(dm,p,(localized && !hovec) ? coordSection : NULL,&nv,vids);CHKERRQ(ierr);
57677eacf09SStefano Zampini     ierr = DMPlexInvertCell(dim,nv,vids);CHKERRQ(ierr);
577*b135d7daSStefano Zampini     if (p >= cEndInterior) {
578*b135d7daSStefano Zampini       ierr = DMPlexGlvisInvertHybrid(cid,vids);CHKERRQ(ierr);
579*b135d7daSStefano Zampini     }
5808135c375SStefano Zampini     ierr = PetscViewerASCIIPrintf(viewer,"%D %D",mid,cid);CHKERRQ(ierr);
5818135c375SStefano Zampini     for (i=0;i<nv;i++) {
582bfadf1d8SStefano Zampini       ierr = PetscViewerASCIIPrintf(viewer," %D",(PetscInt)vids[i]);CHKERRQ(ierr);
5838135c375SStefano Zampini     }
5848135c375SStefano Zampini     ierr = PetscViewerASCIIPrintf(viewer,"\n");CHKERRQ(ierr);
5858135c375SStefano Zampini   }
5868135c375SStefano Zampini 
587cc0d3ed7SStefano Zampini   /* boundary */
588cc0d3ed7SStefano Zampini   ierr = PetscViewerASCIIPrintf(viewer,"\nboundary\n");CHKERRQ(ierr);
589cc0d3ed7SStefano Zampini   if (!enable_boundary) {
590cc0d3ed7SStefano Zampini     ierr = PetscViewerASCIIPrintf(viewer,"%D\n",0);CHKERRQ(ierr);
591cc0d3ed7SStefano Zampini   } else {
59277eacf09SStefano Zampini     DMLabel  perLabel;
59377eacf09SStefano Zampini     PetscBT  bfaces;
594*b135d7daSStefano Zampini     PetscInt fStart,fEnd,*fcells;
59577eacf09SStefano Zampini     PetscInt *faces = NULL,fpc = 0,vpf = 0, vpc = 0;
596*b135d7daSStefano Zampini     PetscInt *facesH = NULL,fpcH = 0,vpfH = 0, vpcH = 0;
597cc0d3ed7SStefano Zampini     PetscInt fv1[]     = {0,1},
598cc0d3ed7SStefano Zampini              fv2tri[]  = {0,1,
599cc0d3ed7SStefano Zampini                           1,2,
600cc0d3ed7SStefano Zampini                           2,0},
601cc0d3ed7SStefano Zampini              fv2quad[] = {0,1,
602cc0d3ed7SStefano Zampini                           1,2,
603cc0d3ed7SStefano Zampini                           2,3,
604cc0d3ed7SStefano Zampini                           3,0},
605*b135d7daSStefano Zampini              fv2quadH[] = {0,1,
606*b135d7daSStefano Zampini                            2,3,
607*b135d7daSStefano Zampini                            0,2,
608*b135d7daSStefano Zampini                            1,3},
609cc0d3ed7SStefano Zampini              fv3tet[]  = {0,1,2,
610cc0d3ed7SStefano Zampini                           0,3,1,
611cc0d3ed7SStefano Zampini                           0,2,3,
612cc0d3ed7SStefano Zampini                           2,1,3},
613*b135d7daSStefano Zampini              fv3wedge[]  = {0,1,2,-1,
614*b135d7daSStefano Zampini                             3,4,5,-1,
615*b135d7daSStefano Zampini                             0,1,3,4,
616*b135d7daSStefano Zampini                             1,2,4,5,
617*b135d7daSStefano Zampini                             2,0,5,3},
618cc0d3ed7SStefano Zampini              fv3hex[]  = {0,1,2,3,
619cc0d3ed7SStefano Zampini                        4,5,6,7,
620cc0d3ed7SStefano Zampini                        0,3,5,4,
621cc0d3ed7SStefano Zampini                        2,1,7,6,
622cc0d3ed7SStefano Zampini                        3,2,6,5,
623cc0d3ed7SStefano Zampini                        0,4,7,1};
624cc0d3ed7SStefano Zampini 
6258135c375SStefano Zampini     /* determine orientation of boundary mesh */
6268135c375SStefano Zampini     if (cEnd-cStart) {
627*b135d7daSStefano Zampini       if (cEndInterior < cEnd) {
628*b135d7daSStefano Zampini         ierr = DMPlexGetConeSize(dm,cEndInterior,&fpcH);CHKERRQ(ierr);
629*b135d7daSStefano Zampini       }
630*b135d7daSStefano Zampini       if (cEndInterior > cStart) {
6318135c375SStefano Zampini         ierr = DMPlexGetConeSize(dm,cStart,&fpc);CHKERRQ(ierr);
632*b135d7daSStefano Zampini       }
6338135c375SStefano Zampini       switch(dim) {
6348135c375SStefano Zampini         case 1:
6358135c375SStefano Zampini           if (fpc != 2) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"Unhandled case faces per cell %D",fpc);
6368135c375SStefano Zampini           faces = fv1;
6378135c375SStefano Zampini           vpf = 1;
63877eacf09SStefano Zampini           vpc = 2;
6398135c375SStefano Zampini           break;
6408135c375SStefano Zampini         case 2:
6418135c375SStefano Zampini           switch (fpc) {
642*b135d7daSStefano Zampini             case 0:
6438135c375SStefano Zampini             case 3:
6448135c375SStefano Zampini               faces = fv2tri;
6458135c375SStefano Zampini               vpf   = 2;
64677eacf09SStefano Zampini               vpc   = 3;
647*b135d7daSStefano Zampini               if (fpcH == 4) {
648*b135d7daSStefano Zampini                 facesH = fv2quadH;
649*b135d7daSStefano Zampini                 vpfH   = 2;
650*b135d7daSStefano Zampini                 vpcH   = 4;
651*b135d7daSStefano Zampini               } else if (fpcH) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"Unhandled case hybrid faces per cell %D",fpcH);
6528135c375SStefano Zampini               break;
6538135c375SStefano Zampini             case 4:
6548135c375SStefano Zampini               faces = fv2quad;
6558135c375SStefano Zampini               vpf   = 2;
65677eacf09SStefano Zampini               vpc   = 4;
657*b135d7daSStefano Zampini               if (fpcH) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"Unhandled case hybrid faces per cell %D",fpcH);
6588135c375SStefano Zampini               break;
6598135c375SStefano Zampini             default:
6608135c375SStefano Zampini               SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"Unhandled case: faces per cell %D",fpc);
6618135c375SStefano Zampini               break;
6628135c375SStefano Zampini           }
6638135c375SStefano Zampini           break;
6648135c375SStefano Zampini         case 3:
6658135c375SStefano Zampini           switch (fpc) {
666*b135d7daSStefano Zampini             case 0:
6678135c375SStefano Zampini             case 4:
6688135c375SStefano Zampini               faces = fv3tet;
6698135c375SStefano Zampini               vpf   = 3;
67077eacf09SStefano Zampini               vpc   = 4;
671*b135d7daSStefano Zampini               if (fpcH == 5) {
672*b135d7daSStefano Zampini                 facesH = fv3wedge;
673*b135d7daSStefano Zampini                 vpfH   = -4;
674*b135d7daSStefano Zampini                 vpcH   = 6;
675*b135d7daSStefano Zampini               } else if (fpcH) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"Unhandled case hybrid faces per cell %D",fpcH);
6768135c375SStefano Zampini               break;
6778135c375SStefano Zampini             case 6:
6788135c375SStefano Zampini               faces = fv3hex;
6798135c375SStefano Zampini               vpf   = 4;
68077eacf09SStefano Zampini               vpc   = 8;
681*b135d7daSStefano Zampini               if (fpcH) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"Unhandled case hybrid faces per cell %D",fpcH);
6828135c375SStefano Zampini               break;
6838135c375SStefano Zampini             default:
6848135c375SStefano Zampini               SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"Unhandled case: faces per cell %D",fpc);
6858135c375SStefano Zampini               break;
6868135c375SStefano Zampini           }
6878135c375SStefano Zampini           break;
6888135c375SStefano Zampini         default:
6898135c375SStefano Zampini           SETERRQ(PetscObjectComm((PetscObject)dm),PETSC_ERR_SUP,"Unhandled dim");
6908135c375SStefano Zampini           break;
6918135c375SStefano Zampini       }
6928135c375SStefano Zampini     }
6938135c375SStefano Zampini     ierr = DMPlexGetHeightStratum(dm,1,&fStart,&fEnd);CHKERRQ(ierr);
69477eacf09SStefano Zampini     ierr = PetscBTCreate(fEnd-fStart,&bfaces);CHKERRQ(ierr);
69577eacf09SStefano Zampini     ierr = DMPlexGetMaxSizes(dm,NULL,&p);CHKERRQ(ierr);
69677eacf09SStefano Zampini     ierr = PetscMalloc1(p,&fcells);CHKERRQ(ierr);
69777eacf09SStefano Zampini     ierr = DMGetLabel(dm,"glvis_periodic_cut",&perLabel);CHKERRQ(ierr);
69877eacf09SStefano Zampini     if (!perLabel && localized) { /* this periodic cut can be moved up to DMPlex setup */
69977eacf09SStefano Zampini       ierr = DMCreateLabel(dm,"glvis_periodic_cut");CHKERRQ(ierr);
70077eacf09SStefano Zampini       ierr = DMGetLabel(dm,"glvis_periodic_cut",&perLabel);CHKERRQ(ierr);
70177eacf09SStefano Zampini       ierr = DMLabelSetDefaultValue(perLabel,1);CHKERRQ(ierr);
70277eacf09SStefano Zampini       for (p=cStart;p<cEnd;p++) {
703*b135d7daSStefano Zampini         PetscInt dof, uvpc;
704*b135d7daSStefano Zampini 
70577eacf09SStefano Zampini         ierr = PetscSectionGetDof(coordSection,p,&dof);CHKERRQ(ierr);
70677eacf09SStefano Zampini         if (dof) {
70777eacf09SStefano Zampini           PetscInt    v,csize,cellClosureSize,*cellClosure = NULL,*vidxs = NULL;
70877eacf09SStefano Zampini           PetscScalar *vals = NULL;
709*b135d7daSStefano Zampini           if (p < cEndInterior) uvpc = vpc;
710*b135d7daSStefano Zampini           else uvpc = vpcH;
71177eacf09SStefano Zampini           if (dof%sdim) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_USER,"Incompatible number of cell dofs %D and space dimension %D",dof,sdim);
712*b135d7daSStefano Zampini           if (dof/sdim != uvpc) SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_SUP,"Incompatible number of cell dofs %D, vertices %D and space dim %D",dof/sdim,uvpc,sdim);
71377eacf09SStefano Zampini           ierr = DMPlexVecGetClosure(dm,coordSection,coordinates,p,&csize,&vals);CHKERRQ(ierr);
71477eacf09SStefano Zampini           ierr = DMPlexGetTransitiveClosure(dm,p,PETSC_TRUE,&cellClosureSize,&cellClosure);CHKERRQ(ierr);
71577eacf09SStefano Zampini           for (v=0;v<cellClosureSize;v++)
71677eacf09SStefano Zampini             if (cellClosure[2*v] >= vStart && cellClosure[2*v] < vEnd) {
71777eacf09SStefano Zampini               vidxs = cellClosure + 2*v;
71877eacf09SStefano Zampini               break;
71977eacf09SStefano Zampini             }
72077eacf09SStefano Zampini           if (!vidxs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Missing vertices");
721*b135d7daSStefano Zampini           for (v=0;v<uvpc;v++) {
72277eacf09SStefano Zampini             PetscInt s;
723044a5661SStefano Zampini 
72477eacf09SStefano Zampini             for (s=0;s<sdim;s++) {
725*b135d7daSStefano Zampini               if (PetscAbsScalar(vals[v*sdim+s]-vals[v*sdim+s+uvpc*sdim])>PETSC_MACHINE_EPSILON) {
72677eacf09SStefano Zampini                 ierr = DMLabelSetValue(perLabel,vidxs[2*v],2);CHKERRQ(ierr);
72777eacf09SStefano Zampini               }
72877eacf09SStefano Zampini             }
72977eacf09SStefano Zampini           }
73077eacf09SStefano Zampini           ierr = DMPlexRestoreTransitiveClosure(dm,p,PETSC_TRUE,&cellClosureSize,&cellClosure);CHKERRQ(ierr);
73177eacf09SStefano Zampini           ierr = DMPlexVecRestoreClosure(dm,coordSection,coordinates,p,&csize,&vals);CHKERRQ(ierr);
73277eacf09SStefano Zampini         }
73377eacf09SStefano Zampini       }
73477eacf09SStefano Zampini       if (dim > 1) {
735*b135d7daSStefano Zampini         PetscInt eEnd,eStart;
736044a5661SStefano Zampini 
73777eacf09SStefano Zampini         ierr = DMPlexGetDepthStratum(dm,1,&eStart,&eEnd);CHKERRQ(ierr);
73877eacf09SStefano Zampini         for (p=eStart;p<eEnd;p++) {
73977eacf09SStefano Zampini           const PetscInt *cone;
74077eacf09SStefano Zampini           PetscInt       coneSize,i;
74177eacf09SStefano Zampini           PetscBool      ispe = PETSC_TRUE;
74277eacf09SStefano Zampini 
74377eacf09SStefano Zampini           ierr = DMPlexGetCone(dm,p,&cone);CHKERRQ(ierr);
74477eacf09SStefano Zampini           ierr = DMPlexGetConeSize(dm,p,&coneSize);CHKERRQ(ierr);
74577eacf09SStefano Zampini           for (i=0;i<coneSize;i++) {
74677eacf09SStefano Zampini             PetscInt v;
74777eacf09SStefano Zampini 
74877eacf09SStefano Zampini             ierr = DMLabelGetValue(perLabel,cone[i],&v);CHKERRQ(ierr);
74977eacf09SStefano Zampini             ispe = (PetscBool)(ispe && (v==2));
75077eacf09SStefano Zampini           }
75177eacf09SStefano Zampini           if (ispe && coneSize) {
7523e96840aSStefano Zampini             PetscInt       ch, numChildren;
7533e96840aSStefano Zampini             const PetscInt *children;
7543e96840aSStefano Zampini 
75577eacf09SStefano Zampini             ierr = DMLabelSetValue(perLabel,p,2);CHKERRQ(ierr);
7563e96840aSStefano Zampini             ierr = DMPlexGetTreeChildren(dm,p,&numChildren,&children);CHKERRQ(ierr);
7573e96840aSStefano Zampini             for (ch = 0; ch < numChildren; ch++) {
7583e96840aSStefano Zampini               ierr = DMLabelSetValue(perLabel,children[ch],2);CHKERRQ(ierr);
7593e96840aSStefano Zampini             }
76077eacf09SStefano Zampini           }
76177eacf09SStefano Zampini         }
76277eacf09SStefano Zampini         if (dim > 2) {
76377eacf09SStefano Zampini           for (p=fStart;p<fEnd;p++) {
76477eacf09SStefano Zampini             const PetscInt *cone;
76577eacf09SStefano Zampini             PetscInt       coneSize,i;
76677eacf09SStefano Zampini             PetscBool      ispe = PETSC_TRUE;
76777eacf09SStefano Zampini 
76877eacf09SStefano Zampini             ierr = DMPlexGetCone(dm,p,&cone);CHKERRQ(ierr);
76977eacf09SStefano Zampini             ierr = DMPlexGetConeSize(dm,p,&coneSize);CHKERRQ(ierr);
77077eacf09SStefano Zampini             for (i=0;i<coneSize;i++) {
77177eacf09SStefano Zampini               PetscInt v;
77277eacf09SStefano Zampini 
77377eacf09SStefano Zampini               ierr = DMLabelGetValue(perLabel,cone[i],&v);CHKERRQ(ierr);
77477eacf09SStefano Zampini               ispe = (PetscBool)(ispe && (v==2));
77577eacf09SStefano Zampini             }
77677eacf09SStefano Zampini             if (ispe && coneSize) {
7773e96840aSStefano Zampini               PetscInt       ch, numChildren;
7783e96840aSStefano Zampini               const PetscInt *children;
7793e96840aSStefano Zampini 
78077eacf09SStefano Zampini               ierr = DMLabelSetValue(perLabel,p,2);CHKERRQ(ierr);
7813e96840aSStefano Zampini               ierr = DMPlexGetTreeChildren(dm,p,&numChildren,&children);CHKERRQ(ierr);
7823e96840aSStefano Zampini               for (ch = 0; ch < numChildren; ch++) {
7833e96840aSStefano Zampini                 ierr = DMLabelSetValue(perLabel,children[ch],2);CHKERRQ(ierr);
7843e96840aSStefano Zampini               }
78577eacf09SStefano Zampini             }
78677eacf09SStefano Zampini           }
78777eacf09SStefano Zampini         }
78877eacf09SStefano Zampini       }
78977eacf09SStefano Zampini     }
79077eacf09SStefano Zampini     for (p=fStart;p<fEnd;p++) {
79177eacf09SStefano Zampini       const PetscInt *support;
7928135c375SStefano Zampini       PetscInt       supportSize;
79377eacf09SStefano Zampini       PetscBool      isbf = PETSC_FALSE;
7948135c375SStefano Zampini 
7958135c375SStefano Zampini       ierr = DMPlexGetSupportSize(dm,p,&supportSize);CHKERRQ(ierr);
7963e6c54aaSStefano Zampini       if (pown) {
7978135c375SStefano Zampini         PetscBool has_owned = PETSC_FALSE, has_ghost = PETSC_FALSE;
79877eacf09SStefano Zampini         PetscInt  i;
79977eacf09SStefano Zampini 
80077eacf09SStefano Zampini         ierr = DMPlexGetSupport(dm,p,&support);CHKERRQ(ierr);
80177eacf09SStefano Zampini         for (i=0;i<supportSize;i++) {
80277eacf09SStefano Zampini           if (PetscLikely(PetscBTLookup(pown,support[i]-cStart))) has_owned = PETSC_TRUE;
80377eacf09SStefano Zampini           else has_ghost = PETSC_TRUE;
80477eacf09SStefano Zampini         }
80577eacf09SStefano Zampini         isbf = (PetscBool)((supportSize == 1 && has_owned) || (supportSize > 1 && has_owned && has_ghost));
80677eacf09SStefano Zampini       } else {
80777eacf09SStefano Zampini         isbf = (PetscBool)(supportSize == 1);
80877eacf09SStefano Zampini       }
80977eacf09SStefano Zampini       if (!isbf && perLabel) {
81077eacf09SStefano Zampini         const PetscInt *cone;
81177eacf09SStefano Zampini         PetscInt       coneSize,i;
81277eacf09SStefano Zampini 
81377eacf09SStefano Zampini         ierr = DMPlexGetCone(dm,p,&cone);CHKERRQ(ierr);
81477eacf09SStefano Zampini         ierr = DMPlexGetConeSize(dm,p,&coneSize);CHKERRQ(ierr);
81577eacf09SStefano Zampini         isbf = PETSC_TRUE;
81677eacf09SStefano Zampini         for (i=0;i<coneSize;i++) {
81777eacf09SStefano Zampini           PetscInt v,d;
81877eacf09SStefano Zampini 
81977eacf09SStefano Zampini           ierr = DMLabelGetValue(perLabel,cone[i],&v);CHKERRQ(ierr);
82077eacf09SStefano Zampini           ierr = DMLabelGetDefaultValue(perLabel,&d);CHKERRQ(ierr);
82177eacf09SStefano Zampini           isbf = (PetscBool)(isbf && v != d);
82277eacf09SStefano Zampini         }
82377eacf09SStefano Zampini       }
82477eacf09SStefano Zampini       if (isbf) {
82577eacf09SStefano Zampini         ierr = PetscBTSet(bfaces,p-fStart);CHKERRQ(ierr);
82677eacf09SStefano Zampini       }
82777eacf09SStefano Zampini     }
82877eacf09SStefano Zampini     /* count boundary faces */
82977eacf09SStefano Zampini     for (p=fStart,bf=0;p<fEnd;p++) {
83077eacf09SStefano Zampini       if (PetscUnlikely(PetscBTLookup(bfaces,p-fStart))) {
83177eacf09SStefano Zampini         const PetscInt *support;
83277eacf09SStefano Zampini         PetscInt       supportSize,c;
8338135c375SStefano Zampini 
8348135c375SStefano Zampini         ierr = DMPlexGetSupportSize(dm,p,&supportSize);CHKERRQ(ierr);
8358135c375SStefano Zampini         ierr = DMPlexGetSupport(dm,p,&support);CHKERRQ(ierr);
83677eacf09SStefano Zampini         for (c=0;c<supportSize;c++) {
8373e96840aSStefano Zampini           const    PetscInt *cone;
838*b135d7daSStefano Zampini           PetscInt cell,cl,coneSize;
8393e96840aSStefano Zampini 
8403e96840aSStefano Zampini           cell = support[c];
8413e96840aSStefano Zampini           if (pown && PetscUnlikely(!PetscBTLookup(pown,cell-cStart))) continue;
8423e96840aSStefano Zampini           ierr = DMPlexGetCone(dm,cell,&cone);CHKERRQ(ierr);
843*b135d7daSStefano Zampini           ierr = DMPlexGetConeSize(dm,cell,&coneSize);CHKERRQ(ierr);
844*b135d7daSStefano Zampini           for (cl=0;cl<coneSize;cl++) {
8453e96840aSStefano Zampini             if (cone[cl] == p) {
8463e96840aSStefano Zampini               bf += 1;
8473e96840aSStefano Zampini               break;
8488135c375SStefano Zampini             }
84977eacf09SStefano Zampini           }
8503e96840aSStefano Zampini         }
8518135c375SStefano Zampini       }
8528135c375SStefano Zampini     }
8537bf4dd16SStefano Zampini     ierr = DMGetLabel(dm,bmark,&label);CHKERRQ(ierr);
8548135c375SStefano Zampini     ierr = PetscViewerASCIIPrintf(viewer,"%D\n",bf);CHKERRQ(ierr);
8558135c375SStefano Zampini     for (p=fStart;p<fEnd;p++) {
85677eacf09SStefano Zampini       if (PetscUnlikely(PetscBTLookup(bfaces,p-fStart))) {
8578135c375SStefano Zampini         const PetscInt *support;
85877eacf09SStefano Zampini         PetscInt       supportSize,c,nc = 0;
8598135c375SStefano Zampini 
8608135c375SStefano Zampini         ierr = DMPlexGetSupportSize(dm,p,&supportSize);CHKERRQ(ierr);
8618135c375SStefano Zampini         ierr = DMPlexGetSupport(dm,p,&support);CHKERRQ(ierr);
8623e6c54aaSStefano Zampini         if (pown) {
86377eacf09SStefano Zampini           for (c=0;c<supportSize;c++) {
86477eacf09SStefano Zampini             if (PetscLikely(PetscBTLookup(pown,support[c]-cStart))) {
86577eacf09SStefano Zampini               fcells[nc++] = support[c];
8668135c375SStefano Zampini             }
86777eacf09SStefano Zampini           }
86877eacf09SStefano Zampini         } else for (c=0;c<supportSize;c++) fcells[nc++] = support[c];
86977eacf09SStefano Zampini         for (c=0;c<nc;c++) {
87077eacf09SStefano Zampini           const    PetscInt *cone;
87177eacf09SStefano Zampini           int      vids[8];
872*b135d7daSStefano Zampini           PetscInt i,coneSize,cell,cl,nv,cid = -1,mid = -1;
8738135c375SStefano Zampini 
87477eacf09SStefano Zampini           cell = fcells[c];
87577eacf09SStefano Zampini           ierr = DMPlexGetCone(dm,cell,&cone);CHKERRQ(ierr);
876*b135d7daSStefano Zampini           ierr = DMPlexGetConeSize(dm,cell,&coneSize);CHKERRQ(ierr);
877*b135d7daSStefano Zampini           for (cl=0;cl<coneSize;cl++)
87877eacf09SStefano Zampini             if (cone[cl] == p)
8798135c375SStefano Zampini               break;
880*b135d7daSStefano Zampini           if (cl == coneSize) continue;
8818135c375SStefano Zampini 
88277eacf09SStefano Zampini           /* face material id and type */
8838135c375SStefano Zampini           ierr = DMPlexGetPointMFEMCellID_Internal(dm,label,p,&mid,&cid);CHKERRQ(ierr);
8848135c375SStefano Zampini           ierr = PetscViewerASCIIPrintf(viewer,"%D %D",mid,cid);CHKERRQ(ierr);
88577eacf09SStefano Zampini           /* vertex ids */
88677eacf09SStefano Zampini           ierr = DMPlexGetPointMFEMVertexIDs_Internal(dm,cell,(localized && !hovec) ? coordSection : NULL,&nv,vids);CHKERRQ(ierr);
887*b135d7daSStefano Zampini           if (cell >= cEndInterior) {
888*b135d7daSStefano Zampini             PetscInt nv = vpfH, inc = vpfH;
889*b135d7daSStefano Zampini             if (vpfH < 0) { /* Wedge */
890*b135d7daSStefano Zampini               if (cl == 0 || cl == 1) nv = 3;
891*b135d7daSStefano Zampini               else nv = 4;
892*b135d7daSStefano Zampini               inc = -vpfH;
893*b135d7daSStefano Zampini             }
894*b135d7daSStefano Zampini             for (i=0;i<nv;i++) {
895*b135d7daSStefano Zampini               ierr = PetscViewerASCIIPrintf(viewer," %d",vids[facesH[cl*inc+i]]);CHKERRQ(ierr);
896*b135d7daSStefano Zampini             }
897*b135d7daSStefano Zampini           } else {
8988135c375SStefano Zampini             for (i=0;i<vpf;i++) {
899b56f74b9SBarry Smith               ierr = PetscViewerASCIIPrintf(viewer," %d",vids[faces[cl*vpf+i]]);CHKERRQ(ierr);
9008135c375SStefano Zampini             }
901*b135d7daSStefano Zampini           }
9028135c375SStefano Zampini           ierr = PetscViewerASCIIPrintf(viewer,"\n");CHKERRQ(ierr);
9033e96840aSStefano Zampini           bf -= 1;
90477eacf09SStefano Zampini         }
9058135c375SStefano Zampini       }
9068135c375SStefano Zampini     }
90777eacf09SStefano Zampini     if (bf) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Remaining boundary faces %D",bf);
90877eacf09SStefano Zampini     ierr = PetscBTDestroy(&bfaces);CHKERRQ(ierr);
90977eacf09SStefano Zampini     ierr = PetscFree(fcells);CHKERRQ(ierr);
9108135c375SStefano Zampini   }
9118135c375SStefano Zampini 
9128135c375SStefano Zampini   /* mark owned vertices */
9133e6c54aaSStefano Zampini   vown = NULL;
9143e6c54aaSStefano Zampini   if (pown) {
9153e6c54aaSStefano Zampini     ierr = PetscBTCreate(vEnd-vStart,&vown);CHKERRQ(ierr);
9168135c375SStefano Zampini     for (p=cStart;p<cEnd;p++) {
9178135c375SStefano Zampini       PetscInt i,closureSize,*closure = NULL;
9188135c375SStefano Zampini 
9193e6c54aaSStefano Zampini       if (PetscUnlikely(!PetscBTLookup(pown,p-cStart))) continue;
9208135c375SStefano Zampini       ierr = DMPlexGetTransitiveClosure(dm,p,PETSC_TRUE,&closureSize,&closure);CHKERRQ(ierr);
9218135c375SStefano Zampini       for (i=0;i<closureSize;i++) {
9228135c375SStefano Zampini         const PetscInt pp = closure[2*i];
9238135c375SStefano Zampini 
9248135c375SStefano Zampini         if (pp >= vStart && pp < vEnd) {
9253e6c54aaSStefano Zampini           ierr = PetscBTSet(vown,pp-vStart);CHKERRQ(ierr);
9268135c375SStefano Zampini         }
9278135c375SStefano Zampini       }
9288135c375SStefano Zampini       ierr = DMPlexRestoreTransitiveClosure(dm,p,PETSC_TRUE,&closureSize,&closure);CHKERRQ(ierr);
9298135c375SStefano Zampini     }
9308135c375SStefano Zampini   }
9318135c375SStefano Zampini 
9328135c375SStefano Zampini   /* vertex_parents (Non-conforming meshes) */
9338135c375SStefano Zampini   parentSection  = NULL;
9348135c375SStefano Zampini   if (enable_ncmesh) {
9358135c375SStefano Zampini     ierr = DMPlexGetTree(dm,&parentSection,NULL,NULL,NULL,NULL);CHKERRQ(ierr);
9368135c375SStefano Zampini   }
9378135c375SStefano Zampini   if (parentSection) {
9388135c375SStefano Zampini     PetscInt vp,gvp;
9398135c375SStefano Zampini 
9408135c375SStefano Zampini     for (vp=0,p=vStart;p<vEnd;p++) {
9418135c375SStefano Zampini       DMLabel  dlabel;
9428135c375SStefano Zampini       PetscInt parent,depth;
9438135c375SStefano Zampini 
9443e6c54aaSStefano Zampini       if (PetscUnlikely(vown && !PetscBTLookup(vown,p-vStart))) continue;
9458135c375SStefano Zampini       ierr = DMPlexGetDepthLabel(dm,&dlabel);CHKERRQ(ierr);
9468135c375SStefano Zampini       ierr = DMLabelGetValue(dlabel,p,&depth);CHKERRQ(ierr);
9478135c375SStefano Zampini       ierr = DMPlexGetTreeParent(dm,p,&parent,NULL);CHKERRQ(ierr);
9488135c375SStefano Zampini       if (parent != p) vp++;
9498135c375SStefano Zampini     }
9508135c375SStefano Zampini     ierr = MPIU_Allreduce(&vp,&gvp,1,MPIU_INT,MPI_SUM,PetscObjectComm((PetscObject)dm));CHKERRQ(ierr);
9518135c375SStefano Zampini     if (gvp) {
9528135c375SStefano Zampini       PetscInt  maxsupp;
9538135c375SStefano Zampini       PetscBool *skip = NULL;
9548135c375SStefano Zampini 
9558135c375SStefano Zampini       ierr = PetscViewerASCIIPrintf(viewer,"\nvertex_parents\n");CHKERRQ(ierr);
9568135c375SStefano Zampini       ierr = PetscViewerASCIIPrintf(viewer,"%D\n",vp);CHKERRQ(ierr);
9578135c375SStefano Zampini       ierr = DMPlexGetMaxSizes(dm,NULL,&maxsupp);CHKERRQ(ierr);
9588135c375SStefano Zampini       ierr = PetscMalloc1(maxsupp,&skip);CHKERRQ(ierr);
9598135c375SStefano Zampini       for (p=vStart;p<vEnd;p++) {
9608135c375SStefano Zampini         DMLabel  dlabel;
9618135c375SStefano Zampini         PetscInt parent;
9628135c375SStefano Zampini 
9633e6c54aaSStefano Zampini         if (PetscUnlikely(vown && !PetscBTLookup(vown,p-vStart))) continue;
9648135c375SStefano Zampini         ierr = DMPlexGetDepthLabel(dm,&dlabel);CHKERRQ(ierr);
9658135c375SStefano Zampini         ierr = DMPlexGetTreeParent(dm,p,&parent,NULL);CHKERRQ(ierr);
9668135c375SStefano Zampini         if (parent != p) {
967d42aff11SStefano Zampini           int            vids[8] = { -1, -1, -1, -1, -1, -1, -1, -1 }; /* silent overzealous clang static analyzer */
9683924b612SStefano Zampini           PetscInt       i,nv,ssize,n,numChildren,depth = -1;
9698135c375SStefano Zampini           const PetscInt *children;
9703924b612SStefano Zampini 
9713924b612SStefano Zampini           ierr = DMPlexGetConeSize(dm,parent,&ssize);CHKERRQ(ierr);
9723924b612SStefano Zampini           switch (ssize) {
9738135c375SStefano Zampini             case 2: /* edge */
9748135c375SStefano Zampini               nv   = 0;
975cc0d3ed7SStefano Zampini               ierr = DMPlexGetPointMFEMVertexIDs_Internal(dm,parent,localized ? coordSection : NULL,&nv,vids);CHKERRQ(ierr);
97677eacf09SStefano Zampini               ierr = DMPlexInvertCell(dim,nv,vids);CHKERRQ(ierr);
9778135c375SStefano Zampini               ierr = PetscViewerASCIIPrintf(viewer,"%D",p-vStart);CHKERRQ(ierr);
9788135c375SStefano Zampini               for (i=0;i<nv;i++) {
979bfadf1d8SStefano Zampini                 ierr = PetscViewerASCIIPrintf(viewer," %D",(PetscInt)vids[i]);CHKERRQ(ierr);
9808135c375SStefano Zampini               }
9818135c375SStefano Zampini               ierr = PetscViewerASCIIPrintf(viewer,"\n");CHKERRQ(ierr);
9828135c375SStefano Zampini               vp--;
9838135c375SStefano Zampini               break;
9848135c375SStefano Zampini             case 4: /* face */
9858135c375SStefano Zampini               ierr = DMPlexGetTreeChildren(dm,parent,&numChildren,&children);CHKERRQ(ierr);
9868135c375SStefano Zampini               for (n=0;n<numChildren;n++) {
9878135c375SStefano Zampini                 ierr = DMLabelGetValue(dlabel,children[n],&depth);CHKERRQ(ierr);
9888135c375SStefano Zampini                 if (!depth) {
9898135c375SStefano Zampini                   const PetscInt *hvsupp,*hesupp,*cone;
9908135c375SStefano Zampini                   PetscInt       hvsuppSize,hesuppSize,coneSize;
991451a39c7SStefano Zampini                   PetscInt       hv = children[n],he = -1,f;
9928135c375SStefano Zampini 
993451a39c7SStefano Zampini                   ierr = PetscMemzero(skip,maxsupp*sizeof(PetscBool));CHKERRQ(ierr);
9948135c375SStefano Zampini                   ierr = DMPlexGetSupportSize(dm,hv,&hvsuppSize);CHKERRQ(ierr);
9958135c375SStefano Zampini                   ierr = DMPlexGetSupport(dm,hv,&hvsupp);CHKERRQ(ierr);
9968135c375SStefano Zampini                   for (i=0;i<hvsuppSize;i++) {
9978135c375SStefano Zampini                     PetscInt ep;
9988135c375SStefano Zampini                     ierr = DMPlexGetTreeParent(dm,hvsupp[i],&ep,NULL);CHKERRQ(ierr);
9998135c375SStefano Zampini                     if (ep != hvsupp[i]) {
10008135c375SStefano Zampini                       he = hvsupp[i];
10018135c375SStefano Zampini                     } else {
10028135c375SStefano Zampini                       skip[i] = PETSC_TRUE;
10038135c375SStefano Zampini                     }
10048135c375SStefano Zampini                   }
1005451a39c7SStefano Zampini                   if (he == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_SUP,"Vertex %D support size %D: hanging edge not found",hv,hvsuppSize);
10068135c375SStefano Zampini                   ierr    = DMPlexGetCone(dm,he,&cone);CHKERRQ(ierr);
100711a4995dSStefano Zampini                   vids[0] = (int)((cone[0] == hv) ? cone[1] : cone[0]);
10088135c375SStefano Zampini                   ierr    = DMPlexGetSupportSize(dm,he,&hesuppSize);CHKERRQ(ierr);
10098135c375SStefano Zampini                   ierr    = DMPlexGetSupport(dm,he,&hesupp);CHKERRQ(ierr);
10108135c375SStefano Zampini                   for (f=0;f<hesuppSize;f++) {
10118135c375SStefano Zampini                     PetscInt j;
10128135c375SStefano Zampini 
10138135c375SStefano Zampini                     ierr = DMPlexGetCone(dm,hesupp[f],&cone);CHKERRQ(ierr);
10148135c375SStefano Zampini                     ierr = DMPlexGetConeSize(dm,hesupp[f],&coneSize);CHKERRQ(ierr);
10158135c375SStefano Zampini                     for (j=0;j<coneSize;j++) {
10168135c375SStefano Zampini                       PetscInt k;
10178135c375SStefano Zampini                       for (k=0;k<hvsuppSize;k++) {
10188135c375SStefano Zampini                         if (hvsupp[k] == cone[j]) {
10198135c375SStefano Zampini                           skip[k] = PETSC_TRUE;
10208135c375SStefano Zampini                           break;
10218135c375SStefano Zampini                         }
10228135c375SStefano Zampini                       }
10238135c375SStefano Zampini                     }
10248135c375SStefano Zampini                   }
10258135c375SStefano Zampini                   for (i=0;i<hvsuppSize;i++) {
10268135c375SStefano Zampini                     if (!skip[i]) {
10278135c375SStefano Zampini                       ierr = DMPlexGetCone(dm,hvsupp[i],&cone);CHKERRQ(ierr);
102811a4995dSStefano Zampini                       vids[1] = (int)((cone[0] == hv) ? cone[1] : cone[0]);
10298135c375SStefano Zampini                     }
10308135c375SStefano Zampini                   }
10318135c375SStefano Zampini                   ierr = PetscViewerASCIIPrintf(viewer,"%D",hv-vStart);CHKERRQ(ierr);
10328135c375SStefano Zampini                   for (i=0;i<2;i++) {
1033bfadf1d8SStefano Zampini                     ierr = PetscViewerASCIIPrintf(viewer," %D",(PetscInt)(vids[i]-vStart));CHKERRQ(ierr);
10348135c375SStefano Zampini                   }
10358135c375SStefano Zampini                   ierr = PetscViewerASCIIPrintf(viewer,"\n");CHKERRQ(ierr);
10368135c375SStefano Zampini                   vp--;
10378135c375SStefano Zampini                 }
10388135c375SStefano Zampini               }
10398135c375SStefano Zampini               break;
10408135c375SStefano Zampini             default:
10413924b612SStefano Zampini               SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"Don't know how to deal with support size %D",ssize);
10428135c375SStefano Zampini           }
10438135c375SStefano Zampini         }
10448135c375SStefano Zampini       }
10458135c375SStefano Zampini       ierr = PetscFree(skip);CHKERRQ(ierr);
10468135c375SStefano Zampini     }
10478135c375SStefano Zampini     if (vp) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Unexpected %D hanging vertices",vp);
10488135c375SStefano Zampini   }
10498135c375SStefano Zampini   ierr = PetscBTDestroy(&pown);CHKERRQ(ierr);
10503e6c54aaSStefano Zampini   ierr = PetscBTDestroy(&vown);CHKERRQ(ierr);
10518135c375SStefano Zampini 
10528135c375SStefano Zampini   /* vertices */
105377eacf09SStefano Zampini   if (hovec) { /* higher-order meshes */
105477eacf09SStefano Zampini     const char *fec;
10550286d493SLisandro Dalcin     PetscInt   i,n,s;
105677eacf09SStefano Zampini 
105777eacf09SStefano Zampini     ierr = PetscViewerASCIIPrintf(viewer,"\nvertices\n");CHKERRQ(ierr);
105877eacf09SStefano Zampini     ierr = PetscViewerASCIIPrintf(viewer,"%D\n",vEnd-vStart);CHKERRQ(ierr);
105977eacf09SStefano Zampini     ierr = PetscViewerASCIIPrintf(viewer,"nodes\n");CHKERRQ(ierr);
106077eacf09SStefano Zampini     ierr = PetscObjectGetName((PetscObject)hovec,&fec);CHKERRQ(ierr);
106177eacf09SStefano Zampini     ierr = PetscViewerASCIIPrintf(viewer,"FiniteElementSpace\n");CHKERRQ(ierr);
10623e7cab22SLisandro Dalcin     ierr = PetscViewerASCIIPrintf(viewer,"%s\n",fec);CHKERRQ(ierr);
106377eacf09SStefano Zampini     ierr = PetscViewerASCIIPrintf(viewer,"VDim: %D\n",sdim);CHKERRQ(ierr);
106477eacf09SStefano Zampini     ierr = PetscViewerASCIIPrintf(viewer,"Ordering: 1\n\n");CHKERRQ(ierr); /*Ordering::byVDIM*/
106577eacf09SStefano Zampini     ierr = VecGetArrayRead(hovec,&array);CHKERRQ(ierr);
106677eacf09SStefano Zampini     ierr = VecGetLocalSize(hovec,&n);CHKERRQ(ierr);
106777eacf09SStefano Zampini     if (n%sdim) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_USER,"Size of local coordinate vector %D incompatible with space dimension %D",n,sdim);
106877eacf09SStefano Zampini     for (i=0;i<n/sdim;i++) {
106977eacf09SStefano Zampini       for (s=0;s<sdim;s++) {
107077eacf09SStefano Zampini         ierr = PetscViewerASCIIPrintf(viewer,fmt,PetscRealPart(array[i*sdim+s]));CHKERRQ(ierr);
107177eacf09SStefano Zampini       }
107277eacf09SStefano Zampini       ierr = PetscViewerASCIIPrintf(viewer,"\n");CHKERRQ(ierr);
107377eacf09SStefano Zampini     }
107477eacf09SStefano Zampini     ierr = VecRestoreArrayRead(hovec,&array);CHKERRQ(ierr);
107577eacf09SStefano Zampini   } else {
1076cc0d3ed7SStefano Zampini     ierr = VecGetLocalSize(coordinates,&nvert);CHKERRQ(ierr);
10778135c375SStefano Zampini     ierr = PetscViewerASCIIPrintf(viewer,"\nvertices\n");CHKERRQ(ierr);
1078cc0d3ed7SStefano Zampini     ierr = PetscViewerASCIIPrintf(viewer,"%D\n",nvert/sdim);CHKERRQ(ierr);
10798135c375SStefano Zampini     ierr = PetscViewerASCIIPrintf(viewer,"%D\n",sdim);CHKERRQ(ierr);
10808135c375SStefano Zampini     ierr = VecGetArrayRead(coordinates,&array);CHKERRQ(ierr);
1081cc0d3ed7SStefano Zampini     for (p=0;p<nvert/sdim;p++) {
1082cc0d3ed7SStefano Zampini       PetscInt s;
1083cc0d3ed7SStefano Zampini       for (s=0;s<sdim;s++) {
10843e96840aSStefano Zampini         PetscReal v = PetscRealPart(array[p*sdim+s]);
10853e96840aSStefano Zampini 
10863e96840aSStefano Zampini         ierr = PetscViewerASCIIPrintf(viewer,fmt,PetscIsInfOrNanReal(v) ? 0.0 : v);CHKERRQ(ierr);
10878135c375SStefano Zampini       }
1088cc0d3ed7SStefano Zampini       ierr = PetscViewerASCIIPrintf(viewer,"\n");CHKERRQ(ierr);
10898135c375SStefano Zampini     }
10908135c375SStefano Zampini     ierr = VecRestoreArrayRead(coordinates,&array);CHKERRQ(ierr);
109177eacf09SStefano Zampini   }
10928135c375SStefano Zampini   PetscFunctionReturn(0);
10938135c375SStefano Zampini }
10948135c375SStefano Zampini 
10950286d493SLisandro Dalcin PetscErrorCode DMPlexView_GLVis(DM dm, PetscViewer viewer)
10968135c375SStefano Zampini {
10978135c375SStefano Zampini   PetscErrorCode ierr;
10988135c375SStefano Zampini   PetscFunctionBegin;
10990286d493SLisandro Dalcin   ierr = DMView_GLVis(dm,viewer,DMPlexView_GLVis_ASCII);CHKERRQ(ierr);
11008135c375SStefano Zampini   PetscFunctionReturn(0);
11018135c375SStefano Zampini }
1102