xref: /petsc/src/dm/impls/plex/plexglvis.c (revision e74666bc403b61dc9123f27fe3e13c153138e9cf)
18135c375SStefano Zampini #include <petsc/private/glvisviewerimpl.h>
28135c375SStefano Zampini #include <petsc/private/petscimpl.h>
38135c375SStefano Zampini #include <petsc/private/dmpleximpl.h>
48135c375SStefano Zampini #include <petscbt.h>
58135c375SStefano Zampini #include <petscdmplex.h>
68135c375SStefano Zampini #include <petscsf.h>
78135c375SStefano Zampini #include <petscds.h>
88135c375SStefano Zampini 
98135c375SStefano Zampini typedef struct {
108135c375SStefano Zampini   PetscInt   nf;
118135c375SStefano Zampini   VecScatter *scctx;
128135c375SStefano Zampini } GLVisViewerCtx;
138135c375SStefano Zampini 
148135c375SStefano Zampini static PetscErrorCode DestroyGLVisViewerCtx_Private(void *vctx)
158135c375SStefano Zampini {
168135c375SStefano Zampini   GLVisViewerCtx *ctx = (GLVisViewerCtx*)vctx;
178135c375SStefano Zampini   PetscInt       i;
188135c375SStefano Zampini   PetscErrorCode ierr;
198135c375SStefano Zampini 
208135c375SStefano Zampini   PetscFunctionBegin;
218135c375SStefano Zampini   for (i=0;i<ctx->nf;i++) {
228135c375SStefano Zampini     ierr = VecScatterDestroy(&ctx->scctx[i]);CHKERRQ(ierr);
238135c375SStefano Zampini   }
248135c375SStefano Zampini   ierr = PetscFree(ctx->scctx);CHKERRQ(ierr);
2551f51421SSatish Balay   ierr = PetscFree(vctx);CHKERRQ(ierr);
268135c375SStefano Zampini   PetscFunctionReturn(0);
278135c375SStefano Zampini }
288135c375SStefano Zampini 
298135c375SStefano Zampini static PetscErrorCode DMPlexSampleGLVisFields_Private(PetscObject oX, PetscInt nf, PetscObject oXfield[], void *vctx)
308135c375SStefano Zampini {
318135c375SStefano Zampini   GLVisViewerCtx *ctx = (GLVisViewerCtx*)vctx;
328135c375SStefano Zampini   PetscInt       f;
338135c375SStefano Zampini   PetscErrorCode ierr;
348135c375SStefano Zampini 
358135c375SStefano Zampini   PetscFunctionBegin;
368135c375SStefano Zampini   for (f=0;f<nf;f++) {
378135c375SStefano Zampini     ierr = VecScatterBegin(ctx->scctx[f],(Vec)oX,(Vec)oXfield[f],INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
388135c375SStefano Zampini     ierr = VecScatterEnd(ctx->scctx[f],(Vec)oX,(Vec)oXfield[f],INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
398135c375SStefano Zampini   }
408135c375SStefano Zampini   PetscFunctionReturn(0);
418135c375SStefano Zampini }
428135c375SStefano Zampini 
438135c375SStefano Zampini /* for FEM, it works for H1 fields only and extracts dofs at cell vertices, discarding any other dof */
448135c375SStefano Zampini PetscErrorCode DMSetUpGLVisViewer_Plex(PetscObject odm, PetscViewer viewer)
458135c375SStefano Zampini {
468135c375SStefano Zampini   DM             dm = (DM)odm;
478135c375SStefano Zampini   Vec            xlocal,xfield;
488135c375SStefano Zampini   PetscDS        ds;
498135c375SStefano Zampini   IS             globalNum,isfield;
508135c375SStefano Zampini   PetscBT        vown;
518135c375SStefano Zampini   char           **fieldname = NULL,**fec_type = NULL;
528135c375SStefano Zampini   const PetscInt *gNum;
53bb77a09fSStefano Zampini   PetscInt       *nlocal,*bs,*idxs,*dims;
548135c375SStefano Zampini   PetscInt       f,maxfields,nfields,c,totc,totdofs,Nv,cum,i;
5511a4995dSStefano Zampini   PetscInt       dim,cStart,cEnd,cEndInterior,vStart,vEnd;
568135c375SStefano Zampini   GLVisViewerCtx *ctx;
578135c375SStefano Zampini   PetscSection   s;
588135c375SStefano Zampini   PetscErrorCode ierr;
598135c375SStefano Zampini 
608135c375SStefano Zampini   PetscFunctionBegin;
618135c375SStefano Zampini   ierr = DMGetDimension(dm,&dim);CHKERRQ(ierr);
628135c375SStefano Zampini   ierr = DMPlexGetDepthStratum(dm,0,&vStart,&vEnd);CHKERRQ(ierr);
638135c375SStefano Zampini   ierr = DMPlexGetHeightStratum(dm,0,&cStart,&cEnd);CHKERRQ(ierr);
648135c375SStefano Zampini   ierr = DMPlexGetHybridBounds(dm, &cEndInterior, NULL, NULL, NULL);CHKERRQ(ierr);
658135c375SStefano Zampini   cEnd = cEndInterior < 0 ? cEnd : cEndInterior;
668135c375SStefano Zampini   ierr = DMPlexGetCellNumbering(dm,&globalNum);CHKERRQ(ierr);
678135c375SStefano Zampini   ierr = ISGetIndices(globalNum,&gNum);CHKERRQ(ierr);
688135c375SStefano Zampini   ierr = PetscBTCreate(vEnd-vStart,&vown);CHKERRQ(ierr);
698135c375SStefano Zampini   for (c = cStart, totc = 0; c < cEnd; c++) {
708135c375SStefano Zampini     if (gNum[c-cStart] >= 0) {
718135c375SStefano Zampini       PetscInt i,numPoints,*points = NULL;
728135c375SStefano Zampini 
738135c375SStefano Zampini       totc++;
748135c375SStefano Zampini       ierr = DMPlexGetTransitiveClosure(dm,c,PETSC_TRUE,&numPoints,&points);CHKERRQ(ierr);
758135c375SStefano Zampini       for (i=0;i<numPoints*2;i+= 2) {
768135c375SStefano Zampini         if ((points[i] >= vStart) && (points[i] < vEnd)) {
778135c375SStefano Zampini           ierr = PetscBTSet(vown,points[i]-vStart);CHKERRQ(ierr);
788135c375SStefano Zampini         }
798135c375SStefano Zampini       }
808135c375SStefano Zampini       ierr = DMPlexRestoreTransitiveClosure(dm,c,PETSC_TRUE,&numPoints,&points);CHKERRQ(ierr);
818135c375SStefano Zampini     }
828135c375SStefano Zampini   }
8377eacf09SStefano Zampini   for (f=0,Nv=0;f<vEnd-vStart;f++) if (PetscLikely(PetscBTLookup(vown,f))) Nv++;
848135c375SStefano Zampini 
858135c375SStefano Zampini   ierr = DMCreateLocalVector(dm,&xlocal);CHKERRQ(ierr);
868135c375SStefano Zampini   ierr = VecGetLocalSize(xlocal,&totdofs);CHKERRQ(ierr);
878135c375SStefano Zampini   ierr = DMGetDefaultSection(dm,&s);CHKERRQ(ierr);
888135c375SStefano Zampini   ierr = PetscSectionGetNumFields(s,&nfields);CHKERRQ(ierr);
898135c375SStefano Zampini   for (f=0,maxfields=0;f<nfields;f++) {
908135c375SStefano Zampini     PetscInt bs;
918135c375SStefano Zampini 
928135c375SStefano Zampini     ierr = PetscSectionGetFieldComponents(s,f,&bs);CHKERRQ(ierr);
938135c375SStefano Zampini     maxfields += bs;
948135c375SStefano Zampini   }
95bb77a09fSStefano Zampini   ierr = PetscCalloc6(maxfields,&fieldname,maxfields,&nlocal,maxfields,&bs,maxfields,&dims,maxfields,&fec_type,totdofs,&idxs);CHKERRQ(ierr);
968135c375SStefano Zampini   ierr = PetscNew(&ctx);CHKERRQ(ierr);
978135c375SStefano Zampini   ierr = PetscCalloc1(maxfields,&ctx->scctx);CHKERRQ(ierr);
988135c375SStefano Zampini   ierr = DMGetDS(dm,&ds);CHKERRQ(ierr);
998135c375SStefano Zampini   if (ds) {
1008135c375SStefano Zampini     for (f=0;f<nfields;f++) {
1018135c375SStefano Zampini       const char* fname;
1028135c375SStefano Zampini       char        name[256];
1038135c375SStefano Zampini       PetscObject disc;
1048135c375SStefano Zampini       size_t      len;
1058135c375SStefano Zampini 
1068135c375SStefano Zampini       ierr = PetscSectionGetFieldName(s,f,&fname);CHKERRQ(ierr);
1078135c375SStefano Zampini       ierr = PetscStrlen(fname,&len);CHKERRQ(ierr);
1088135c375SStefano Zampini       if (len) {
1098135c375SStefano Zampini         ierr = PetscStrcpy(name,fname);CHKERRQ(ierr);
1108135c375SStefano Zampini       } else {
1118135c375SStefano Zampini         ierr = PetscSNPrintf(name,256,"Field%d",f);CHKERRQ(ierr);
1128135c375SStefano Zampini       }
1138135c375SStefano Zampini       ierr = PetscDSGetDiscretization(ds,f,&disc);CHKERRQ(ierr);
1148135c375SStefano Zampini       if (disc) {
1158135c375SStefano Zampini         PetscClassId id;
1168135c375SStefano Zampini         PetscInt     Nc;
1178135c375SStefano Zampini         char         fec[64];
1188135c375SStefano Zampini 
1198135c375SStefano Zampini         ierr = PetscObjectGetClassId(disc, &id);CHKERRQ(ierr);
1208135c375SStefano Zampini         if (id == PETSCFE_CLASSID) {
1218135c375SStefano Zampini           PetscFE            fem = (PetscFE)disc;
1228135c375SStefano Zampini           PetscDualSpace     sp;
1238135c375SStefano Zampini           PetscDualSpaceType spname;
1248135c375SStefano Zampini           PetscInt           order;
1258135c375SStefano Zampini           PetscBool          islag,continuous,H1 = PETSC_TRUE;
1268135c375SStefano Zampini 
1278135c375SStefano Zampini           ierr = PetscFEGetNumComponents(fem,&Nc);CHKERRQ(ierr);
1288135c375SStefano Zampini           ierr = PetscFEGetDualSpace(fem,&sp);CHKERRQ(ierr);
1298135c375SStefano Zampini           ierr = PetscDualSpaceGetType(sp,&spname);CHKERRQ(ierr);
1308135c375SStefano Zampini           ierr = PetscStrcmp(spname,PETSCDUALSPACELAGRANGE,&islag);CHKERRQ(ierr);
1318135c375SStefano Zampini           if (!islag) SETERRQ(PetscObjectComm((PetscObject)dm),PETSC_ERR_SUP,"Unsupported dual space");
1328135c375SStefano Zampini           ierr = PetscDualSpaceLagrangeGetContinuity(sp,&continuous);CHKERRQ(ierr);
1338135c375SStefano Zampini           if (!continuous) SETERRQ(PetscObjectComm((PetscObject)dm),PETSC_ERR_SUP,"Discontinuous space visualization currently unsupported");
1348135c375SStefano Zampini           ierr = PetscDualSpaceGetOrder(sp,&order);CHKERRQ(ierr);
1358135c375SStefano Zampini           if (continuous && order > 0) {
1368135c375SStefano Zampini             ierr = PetscSNPrintf(fec,64,"FiniteElementCollection: H1_%dD_P1",dim);CHKERRQ(ierr);
1378135c375SStefano Zampini           } else {
1388135c375SStefano Zampini             H1   = PETSC_FALSE;
1398135c375SStefano Zampini             ierr = PetscSNPrintf(fec,64,"FiniteElementCollection: L2_%dD_P%d",dim,order);CHKERRQ(ierr);
1408135c375SStefano Zampini           }
1418135c375SStefano Zampini           ierr = PetscStrallocpy(name,&fieldname[ctx->nf]);CHKERRQ(ierr);
1428135c375SStefano Zampini           bs[ctx->nf]   = Nc;
143bb77a09fSStefano Zampini           dims[ctx->nf] = dim;
1448135c375SStefano Zampini           if (H1) {
1458135c375SStefano Zampini             nlocal[ctx->nf] = Nc * Nv;
1468135c375SStefano Zampini             ierr = PetscStrallocpy(fec,&fec_type[ctx->nf]);CHKERRQ(ierr);
1478135c375SStefano Zampini             ierr = VecCreateSeq(PETSC_COMM_SELF,Nv*Nc,&xfield);CHKERRQ(ierr);
1488135c375SStefano Zampini             for (i=0,cum=0;i<vEnd-vStart;i++) {
1498135c375SStefano Zampini               PetscInt j,off;
1508135c375SStefano Zampini 
1518135c375SStefano Zampini               if (PetscUnlikely(!PetscBTLookup(vown,i))) continue;
1528135c375SStefano Zampini               ierr = PetscSectionGetFieldOffset(s,i+vStart,f,&off);CHKERRQ(ierr);
1538135c375SStefano Zampini               for (j=0;j<Nc;j++) idxs[cum++] = off + j;
1548135c375SStefano Zampini             }
1558135c375SStefano Zampini             ierr = ISCreateGeneral(PetscObjectComm((PetscObject)xlocal),Nv*Nc,idxs,PETSC_USE_POINTER,&isfield);CHKERRQ(ierr);
1568135c375SStefano Zampini           } else {
1578135c375SStefano Zampini             nlocal[ctx->nf] = Nc * totc;
1588135c375SStefano Zampini             ierr = PetscStrallocpy(fec,&fec_type[ctx->nf]);CHKERRQ(ierr);
1598135c375SStefano Zampini             ierr = VecCreateSeq(PETSC_COMM_SELF,Nc*totc,&xfield);CHKERRQ(ierr);
1608135c375SStefano Zampini             for (i=0,cum=0;i<cEnd-cStart;i++) {
1618135c375SStefano Zampini               PetscInt j,off;
1628135c375SStefano Zampini 
1638135c375SStefano Zampini               if (PetscUnlikely(gNum[i] < 0)) continue;
1648135c375SStefano Zampini               ierr = PetscSectionGetFieldOffset(s,i+cStart,f,&off);CHKERRQ(ierr);
1658135c375SStefano Zampini               for (j=0;j<Nc;j++) idxs[cum++] = off + j;
1668135c375SStefano Zampini             }
1678135c375SStefano Zampini             ierr = ISCreateGeneral(PetscObjectComm((PetscObject)xlocal),totc*Nc,idxs,PETSC_USE_POINTER,&isfield);CHKERRQ(ierr);
1688135c375SStefano Zampini           }
1698135c375SStefano Zampini           ierr = VecScatterCreate(xlocal,isfield,xfield,NULL,&ctx->scctx[ctx->nf]);CHKERRQ(ierr);
1708135c375SStefano Zampini           ierr = VecDestroy(&xfield);CHKERRQ(ierr);
1718135c375SStefano Zampini           ierr = ISDestroy(&isfield);CHKERRQ(ierr);
1728135c375SStefano Zampini           ctx->nf++;
1738135c375SStefano Zampini         } else if (id == PETSCFV_CLASSID) {
1748135c375SStefano Zampini           PetscInt c;
1758135c375SStefano Zampini 
1768135c375SStefano Zampini           ierr = PetscFVGetNumComponents((PetscFV)disc,&Nc);CHKERRQ(ierr);
1778135c375SStefano Zampini           ierr = PetscSNPrintf(fec,64,"FiniteElementCollection: L2_%dD_P0",dim);CHKERRQ(ierr);
1788135c375SStefano Zampini           for (c = 0; c < Nc; c++) {
1798135c375SStefano Zampini             char comp[256];
1808135c375SStefano Zampini             ierr = PetscSNPrintf(comp,256,"%s-Comp%d",name,c);CHKERRQ(ierr);
1818135c375SStefano Zampini             ierr = PetscStrallocpy(comp,&fieldname[ctx->nf]);CHKERRQ(ierr);
1828135c375SStefano Zampini             bs[ctx->nf] = 1; /* Does PetscFV support components with different block size? */
1838135c375SStefano Zampini             nlocal[ctx->nf] = totc;
184bb77a09fSStefano Zampini             dims[ctx->nf] = dim;
1858135c375SStefano Zampini             ierr = PetscStrallocpy(fec,&fec_type[ctx->nf]);CHKERRQ(ierr);
1868135c375SStefano Zampini             ierr = VecCreateSeq(PETSC_COMM_SELF,totc,&xfield);CHKERRQ(ierr);
1878135c375SStefano Zampini             for (i=0,cum=0;i<cEnd-cStart;i++) {
1888135c375SStefano Zampini               PetscInt off;
1898135c375SStefano Zampini 
1908135c375SStefano Zampini               if (PetscUnlikely(gNum[i])<0) continue;
1918135c375SStefano Zampini               ierr = PetscSectionGetFieldOffset(s,i+cStart,f,&off);CHKERRQ(ierr);
1928135c375SStefano Zampini               idxs[cum++] = off + c;
1938135c375SStefano Zampini             }
1948135c375SStefano Zampini             ierr = ISCreateGeneral(PetscObjectComm((PetscObject)xlocal),totc,idxs,PETSC_USE_POINTER,&isfield);CHKERRQ(ierr);
1958135c375SStefano Zampini             ierr = VecScatterCreate(xlocal,isfield,xfield,NULL,&ctx->scctx[ctx->nf]);CHKERRQ(ierr);
1968135c375SStefano Zampini             ierr = VecDestroy(&xfield);CHKERRQ(ierr);
1978135c375SStefano Zampini             ierr = ISDestroy(&isfield);CHKERRQ(ierr);
1988135c375SStefano Zampini             ctx->nf++;
1998135c375SStefano Zampini           }
2008135c375SStefano Zampini         } else SETERRQ1(PetscObjectComm((PetscObject)dm),PETSC_ERR_ARG_WRONG,"Unknown discretization type for field %D",f);
2018135c375SStefano Zampini       } else SETERRQ1(PetscObjectComm((PetscObject)dm),PETSC_ERR_SUP,"Missing discretization for field %D",f);
2028135c375SStefano Zampini     }
2038135c375SStefano Zampini   } else SETERRQ(PetscObjectComm((PetscObject)dm),PETSC_ERR_SUP,"Needs a DS attached to the DM");
2048135c375SStefano Zampini   ierr = PetscBTDestroy(&vown);CHKERRQ(ierr);
2058135c375SStefano Zampini   ierr = VecDestroy(&xlocal);CHKERRQ(ierr);
2068135c375SStefano Zampini   ierr = ISRestoreIndices(globalNum,&gNum);CHKERRQ(ierr);
2078135c375SStefano Zampini 
2088135c375SStefano Zampini   /* customize the viewer */
209bb77a09fSStefano Zampini   ierr = PetscViewerGLVisSetFields(viewer,ctx->nf,(const char**)fieldname,(const char**)fec_type,nlocal,bs,dims,DMPlexSampleGLVisFields_Private,ctx,DestroyGLVisViewerCtx_Private);CHKERRQ(ierr);
2108135c375SStefano Zampini   for (f=0;f<ctx->nf;f++) {
2118135c375SStefano Zampini     ierr = PetscFree(fieldname[f]);CHKERRQ(ierr);
2128135c375SStefano Zampini     ierr = PetscFree(fec_type[f]);CHKERRQ(ierr);
2138135c375SStefano Zampini   }
214bb77a09fSStefano Zampini   ierr = PetscFree6(fieldname,nlocal,bs,dims,fec_type,idxs);CHKERRQ(ierr);
2158135c375SStefano Zampini   PetscFunctionReturn(0);
2168135c375SStefano Zampini }
2178135c375SStefano Zampini 
2188135c375SStefano Zampini typedef enum {MFEM_POINT=0,MFEM_SEGMENT,MFEM_TRIANGLE,MFEM_SQUARE,MFEM_TETRAHEDRON,MFEM_CUBE,MFEM_UNDEF} MFEM_cid;
2198135c375SStefano Zampini 
2208135c375SStefano Zampini MFEM_cid mfem_table_cid[4][7] = { {MFEM_POINT,MFEM_UNDEF,MFEM_UNDEF  ,MFEM_UNDEF   ,MFEM_UNDEF      ,MFEM_UNDEF, MFEM_UNDEF},
2218135c375SStefano Zampini                                   {MFEM_POINT,MFEM_UNDEF,MFEM_SEGMENT,MFEM_UNDEF   ,MFEM_UNDEF      ,MFEM_UNDEF, MFEM_UNDEF},
2228135c375SStefano Zampini                                   {MFEM_POINT,MFEM_UNDEF,MFEM_SEGMENT,MFEM_TRIANGLE,MFEM_SQUARE     ,MFEM_UNDEF, MFEM_UNDEF},
2238135c375SStefano Zampini                                   {MFEM_POINT,MFEM_UNDEF,MFEM_SEGMENT,MFEM_UNDEF   ,MFEM_TETRAHEDRON,MFEM_UNDEF, MFEM_CUBE } };
2248135c375SStefano Zampini 
225cc0d3ed7SStefano Zampini static PetscErrorCode DMPlexGetPointMFEMCellID_Internal(DM dm, DMLabel label, PetscInt p, PetscInt *mid, PetscInt *cid)
2268135c375SStefano Zampini {
2278135c375SStefano Zampini   DMLabel        dlabel;
2288135c375SStefano Zampini   PetscInt       depth,csize;
2298135c375SStefano Zampini   PetscErrorCode ierr;
2308135c375SStefano Zampini 
2318135c375SStefano Zampini   PetscFunctionBegin;
2328135c375SStefano Zampini   ierr = DMPlexGetDepthLabel(dm,&dlabel);CHKERRQ(ierr);
2338135c375SStefano Zampini   ierr = DMLabelGetValue(dlabel,p,&depth);CHKERRQ(ierr);
2348135c375SStefano Zampini   ierr = DMPlexGetConeSize(dm,p,&csize);CHKERRQ(ierr);
2358135c375SStefano Zampini   if (label) {
2368135c375SStefano Zampini     ierr = DMLabelGetValue(label,p,mid);CHKERRQ(ierr);
23777eacf09SStefano Zampini   } else *mid = 1;
2388135c375SStefano Zampini   *cid = mfem_table_cid[depth][csize];
2398135c375SStefano Zampini   PetscFunctionReturn(0);
2408135c375SStefano Zampini }
2418135c375SStefano Zampini 
242cc0d3ed7SStefano Zampini static PetscErrorCode DMPlexGetPointMFEMVertexIDs_Internal(DM dm, PetscInt p, PetscSection csec, PetscInt *nv, int vids[])
2438135c375SStefano Zampini {
244cc0d3ed7SStefano Zampini   PetscInt       dim,sdim,dof = 0,off = 0,i,q,vStart,vEnd,numPoints,*points = NULL;
2458135c375SStefano Zampini   PetscErrorCode ierr;
2468135c375SStefano Zampini 
2478135c375SStefano Zampini   PetscFunctionBegin;
2488135c375SStefano Zampini   ierr = DMPlexGetDepthStratum(dm,0,&vStart,&vEnd);CHKERRQ(ierr);
249cc0d3ed7SStefano Zampini   ierr = DMGetDimension(dm,&dim);CHKERRQ(ierr);
250cc0d3ed7SStefano Zampini   sdim = dim;
251cc0d3ed7SStefano Zampini   if (csec) {
252cc0d3ed7SStefano Zampini     ierr = DMGetCoordinateDim(dm,&sdim);CHKERRQ(ierr);
253cc0d3ed7SStefano Zampini     ierr = PetscSectionGetOffset(csec,vStart,&off);CHKERRQ(ierr);
254cc0d3ed7SStefano Zampini     off  = off/sdim;
255cc0d3ed7SStefano Zampini     ierr = PetscSectionGetDof(csec,p,&dof);CHKERRQ(ierr);
256cc0d3ed7SStefano Zampini   }
257cc0d3ed7SStefano Zampini   if (!dof) {
2588135c375SStefano Zampini     ierr = DMPlexGetTransitiveClosure(dm,p,PETSC_TRUE,&numPoints,&points);CHKERRQ(ierr);
2598135c375SStefano Zampini     for (i=0,q=0;i<numPoints*2;i+= 2)
2608135c375SStefano Zampini       if ((points[i] >= vStart) && (points[i] < vEnd))
261cc0d3ed7SStefano Zampini         vids[q++] = points[i]-vStart+off;
2628135c375SStefano Zampini     ierr = DMPlexRestoreTransitiveClosure(dm,p,PETSC_TRUE,&numPoints,&points);CHKERRQ(ierr);
263cc0d3ed7SStefano Zampini   } else {
264cc0d3ed7SStefano Zampini     ierr = PetscSectionGetOffset(csec,p,&off);CHKERRQ(ierr);
265cc0d3ed7SStefano Zampini     ierr = PetscSectionGetDof(csec,p,&dof);CHKERRQ(ierr);
266cc0d3ed7SStefano Zampini     for (q=0;q<dof/sdim;q++) vids[q] = off/sdim + q;
267cc0d3ed7SStefano Zampini   }
2688135c375SStefano Zampini   *nv  = q;
2698135c375SStefano Zampini   PetscFunctionReturn(0);
2708135c375SStefano Zampini }
2718135c375SStefano Zampini 
27277eacf09SStefano Zampini /*
27377eacf09SStefano Zampini    ASCII visualization/dump: full support for simplices and tensor product cells. It supports AMR
27477eacf09SStefano Zampini    Higher order meshes are also supported
27577eacf09SStefano Zampini */
2768135c375SStefano Zampini static PetscErrorCode DMPlexView_GLVis_ASCII(DM dm, PetscViewer viewer)
2778135c375SStefano Zampini {
2788135c375SStefano Zampini   DMLabel              label;
2798135c375SStefano Zampini   PetscSection         coordSection,parentSection;
28077eacf09SStefano Zampini   Vec                  coordinates,hovec;
2818135c375SStefano Zampini   IS                   globalNum = NULL;
2828135c375SStefano Zampini   const PetscScalar    *array;
2838135c375SStefano Zampini   const PetscInt       *gNum;
2848135c375SStefano Zampini   PetscInt             bf,p,sdim,dim,depth,novl;
285cc0d3ed7SStefano Zampini   PetscInt             cStart,cEnd,cEndInterior,vStart,vEnd,nvert;
2868135c375SStefano Zampini   PetscMPIInt          commsize;
287cc0d3ed7SStefano Zampini   PetscBool            localized,ovl,isascii,enable_boundary,enable_ncmesh;
2888135c375SStefano Zampini   PetscBT              pown;
2898135c375SStefano Zampini   PetscErrorCode       ierr;
2908135c375SStefano Zampini   PetscContainer       glvis_container;
29177eacf09SStefano Zampini   PetscBool            periodic, enabled = PETSC_TRUE;
29277eacf09SStefano Zampini   const char           *fmt;
2938135c375SStefano Zampini 
2948135c375SStefano Zampini   PetscFunctionBegin;
2958135c375SStefano Zampini   PetscValidHeaderSpecific(dm,DM_CLASSID,1);
2968135c375SStefano Zampini   PetscValidHeaderSpecific(viewer,PETSC_VIEWER_CLASSID,2);
2978135c375SStefano Zampini   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&isascii);CHKERRQ(ierr);
2988135c375SStefano Zampini   if (!isascii) SETERRQ(PetscObjectComm((PetscObject)viewer),PETSC_ERR_SUP,"Viewer must be of type VIEWERASCII");
2998135c375SStefano Zampini   ierr = MPI_Comm_size(PetscObjectComm((PetscObject)viewer),&commsize);CHKERRQ(ierr);
3008135c375SStefano Zampini   if (commsize > 1) SETERRQ(PetscObjectComm((PetscObject)viewer),PETSC_ERR_SUP,"Use single sequential viewers for parallel visualization");
3018135c375SStefano Zampini   ierr = DMGetDimension(dm,&dim);CHKERRQ(ierr);
3028135c375SStefano Zampini   ierr = DMPlexGetDepth(dm,&depth);CHKERRQ(ierr);
3038135c375SStefano Zampini   if (depth >= 0 && dim != depth) SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Mesh must be interpolated");
3048135c375SStefano Zampini 
3058135c375SStefano Zampini   /* get container: determines if a process visualizes is portion of the data or not */
3068135c375SStefano Zampini   ierr = PetscObjectQuery((PetscObject)viewer,"_glvis_info_container",(PetscObject*)&glvis_container);CHKERRQ(ierr);
3078135c375SStefano Zampini   if (!glvis_container) SETERRQ(PetscObjectComm((PetscObject)dm),PETSC_ERR_PLIB,"Missing GLVis container");
3088135c375SStefano Zampini   {
3098135c375SStefano Zampini     PetscViewerGLVisInfo glvis_info;
3108135c375SStefano Zampini     ierr    = PetscContainerGetPointer(glvis_container,(void**)&glvis_info);CHKERRQ(ierr);
3118135c375SStefano Zampini     enabled = glvis_info->enabled;
31277eacf09SStefano Zampini     fmt     = glvis_info->fmt;
3138135c375SStefano Zampini   }
314cc0d3ed7SStefano Zampini   ierr = DMPlexGetHybridBounds(dm, &cEndInterior, NULL, NULL, NULL);CHKERRQ(ierr);
3158135c375SStefano Zampini   ierr = DMPlexGetHeightStratum(dm,0,&cStart,&cEnd);CHKERRQ(ierr);
3168135c375SStefano Zampini   cEnd = cEndInterior < 0 ? cEnd : cEndInterior;
3178135c375SStefano Zampini   ierr = DMPlexGetDepthStratum(dm,0,&vStart,&vEnd);CHKERRQ(ierr);
31877eacf09SStefano Zampini   ierr = DMGetPeriodicity(dm,&periodic,NULL,NULL,NULL);CHKERRQ(ierr);
319cc0d3ed7SStefano Zampini   ierr = DMGetCoordinatesLocalized(dm,&localized);CHKERRQ(ierr);
32077eacf09SStefano Zampini   if (periodic && !localized) SETERRQ(PetscObjectComm((PetscObject)dm),PETSC_ERR_SUP,"Coordinates need to be localized");
321cc0d3ed7SStefano Zampini   ierr = DMGetCoordinateSection(dm,&coordSection);CHKERRQ(ierr);
32277eacf09SStefano Zampini   ierr = DMGetCoordinateDim(dm,&sdim);CHKERRQ(ierr);
32377eacf09SStefano Zampini   ierr = DMGetCoordinatesLocal(dm,&coordinates);CHKERRQ(ierr);
32477eacf09SStefano Zampini 
32577eacf09SStefano Zampini   /* Users can attach a coordinate vector to the DM in case they have a higher-order mesh
32677eacf09SStefano Zampini      DMPlex does not currently support HO meshes, so there's no API for this */
32777eacf09SStefano Zampini   ierr = PetscObjectQuery((PetscObject)dm,"_glvis_mesh_coords",(PetscObject*)&hovec);CHKERRQ(ierr);
3288135c375SStefano Zampini 
3298135c375SStefano Zampini   /*
3308135c375SStefano Zampini      a couple of sections of the mesh specification are disabled
33177eacf09SStefano Zampini        - boundary: unless we want to visualize boundary attributes or we have a periodic mesh
33277eacf09SStefano Zampini                    the boundary is not needed for proper mesh visualization
33377eacf09SStefano Zampini        - vertex_parents: used for non-conforming meshes only when we want to use MFEM as a discretization package
33477eacf09SStefano Zampini                          and be able to derefine the mesh
3358135c375SStefano Zampini   */
336*e74666bcSStefano Zampini   enable_boundary = periodic;
3378135c375SStefano Zampini   enable_ncmesh = PETSC_FALSE;
3388135c375SStefano Zampini   ierr = PetscOptionsBegin(PetscObjectComm((PetscObject)dm),((PetscObject)dm)->prefix,"GLVis PetscViewer DMPlex Options","PetscViewer");CHKERRQ(ierr);
3398135c375SStefano Zampini   ierr = PetscOptionsBool("-viewer_glvis_dm_plex_enable_boundary","Enable boundary section in mesh representation; useful for debugging purposes",NULL,enable_boundary,&enable_boundary,NULL);CHKERRQ(ierr);
3408135c375SStefano Zampini   ierr = PetscOptionsBool("-viewer_glvis_dm_plex_enable_ncmesh","Enable vertex_parents section in mesh representation; useful for debugging purposes",NULL,enable_ncmesh,&enable_ncmesh,NULL);CHKERRQ(ierr);
3418135c375SStefano Zampini   ierr = PetscOptionsEnd();CHKERRQ(ierr);
3428135c375SStefano Zampini 
3438135c375SStefano Zampini   /* Identify possible cells in the overlap */
3448135c375SStefano Zampini   gNum = NULL;
3458135c375SStefano Zampini   novl = 0;
3468135c375SStefano Zampini   ovl  = PETSC_FALSE;
3478135c375SStefano Zampini   pown = NULL;
3488135c375SStefano Zampini   ierr = MPI_Comm_size(PetscObjectComm((PetscObject)dm),&commsize);CHKERRQ(ierr);
3498135c375SStefano Zampini   if (commsize > 1) {
3508135c375SStefano Zampini     ierr = DMPlexGetCellNumbering(dm,&globalNum);CHKERRQ(ierr);
3518135c375SStefano Zampini     ierr = ISGetIndices(globalNum,&gNum);CHKERRQ(ierr);
3528135c375SStefano Zampini     for (p=cStart; p<cEnd; p++) {
3538135c375SStefano Zampini       if (gNum[p-cStart] < 0) {
3548135c375SStefano Zampini         ovl = PETSC_TRUE;
3558135c375SStefano Zampini         novl++;
3568135c375SStefano Zampini       }
3578135c375SStefano Zampini     }
3588135c375SStefano Zampini     if (ovl) {
3598135c375SStefano Zampini       /* it may happen that pown get not destroyed, if the user closes the window while this function is running.
3608135c375SStefano Zampini          TODO: garbage collector? attach pown to dm?  */
3618135c375SStefano Zampini       ierr = PetscBTCreate(PetscMax(cEnd-cStart,vEnd-vStart),&pown);CHKERRQ(ierr);
3628135c375SStefano Zampini     }
3638135c375SStefano Zampini   }
3648135c375SStefano Zampini 
3658135c375SStefano Zampini   if (!enabled) {
3668135c375SStefano Zampini     ierr = PetscViewerASCIIPrintf(viewer,"MFEM mesh v1.1\n");CHKERRQ(ierr);
3678135c375SStefano Zampini     ierr = PetscViewerASCIIPrintf(viewer,"\ndimension\n");CHKERRQ(ierr);
3688135c375SStefano Zampini     ierr = PetscViewerASCIIPrintf(viewer,"%D\n",dim);CHKERRQ(ierr);
3698135c375SStefano Zampini     ierr = PetscViewerASCIIPrintf(viewer,"\nelements\n");CHKERRQ(ierr);
3708135c375SStefano Zampini     ierr = PetscViewerASCIIPrintf(viewer,"%D\n",0);CHKERRQ(ierr);
3718135c375SStefano Zampini     ierr = PetscViewerASCIIPrintf(viewer,"\nboundary\n");CHKERRQ(ierr);
3728135c375SStefano Zampini     ierr = PetscViewerASCIIPrintf(viewer,"%D\n",0);CHKERRQ(ierr);
3738135c375SStefano Zampini     ierr = PetscViewerASCIIPrintf(viewer,"\nvertices\n");CHKERRQ(ierr);
3748135c375SStefano Zampini     ierr = PetscViewerASCIIPrintf(viewer,"%D\n",0);CHKERRQ(ierr);
3758135c375SStefano Zampini     ierr = PetscViewerASCIIPrintf(viewer,"%D\n",sdim);CHKERRQ(ierr);
3768135c375SStefano Zampini     ierr = PetscBTDestroy(&pown);CHKERRQ(ierr);
3778135c375SStefano Zampini     if (globalNum) {
3788135c375SStefano Zampini       ierr = ISRestoreIndices(globalNum,&gNum);CHKERRQ(ierr);
3798135c375SStefano Zampini     }
3808135c375SStefano Zampini     PetscFunctionReturn(0);
3818135c375SStefano Zampini   }
3828135c375SStefano Zampini 
3838135c375SStefano Zampini   /* header */
3848135c375SStefano Zampini   ierr = PetscViewerASCIIPrintf(viewer,"MFEM mesh v1.1\n");CHKERRQ(ierr);
3858135c375SStefano Zampini 
3868135c375SStefano Zampini   /* topological dimension */
3878135c375SStefano Zampini   ierr = PetscViewerASCIIPrintf(viewer,"\ndimension\n");CHKERRQ(ierr);
3888135c375SStefano Zampini   ierr = PetscViewerASCIIPrintf(viewer,"%D\n",dim);CHKERRQ(ierr);
3898135c375SStefano Zampini 
3908135c375SStefano Zampini   /* elements */
3918135c375SStefano Zampini   /* TODO: is this the label we want to use for marking material IDs?
3928135c375SStefano Zampini      We should decide to have a single marker for these stuff
3938135c375SStefano Zampini      Proposal: DMSetMaterialLabel?
3948135c375SStefano Zampini   */
395d3e05d38SLisandro Dalcin   ierr = DMGetLabel(dm,"Cell Sets",&label);CHKERRQ(ierr);
3968135c375SStefano Zampini   ierr = PetscViewerASCIIPrintf(viewer,"\nelements\n");CHKERRQ(ierr);
3978135c375SStefano Zampini   ierr = PetscViewerASCIIPrintf(viewer,"%D\n",cEnd-cStart-novl);CHKERRQ(ierr);
3988135c375SStefano Zampini   for (p=cStart;p<cEnd;p++) {
39911a4995dSStefano Zampini     int      vids[8];
40011a4995dSStefano Zampini     PetscInt i,nv = 0,cid = -1,mid = 1;
4018135c375SStefano Zampini 
4028135c375SStefano Zampini     if (ovl) {
4038135c375SStefano Zampini       if (gNum[p-cStart] < 0) continue;
4048135c375SStefano Zampini       else {
4058135c375SStefano Zampini         ierr = PetscBTSet(pown,p-cStart);CHKERRQ(ierr);
4068135c375SStefano Zampini       }
4078135c375SStefano Zampini     }
4088135c375SStefano Zampini     ierr = DMPlexGetPointMFEMCellID_Internal(dm,label,p,&mid,&cid);CHKERRQ(ierr);
40977eacf09SStefano Zampini     ierr = DMPlexGetPointMFEMVertexIDs_Internal(dm,p,(localized && !hovec) ? coordSection : NULL,&nv,vids);CHKERRQ(ierr);
41077eacf09SStefano Zampini     ierr = DMPlexInvertCell(dim,nv,vids);CHKERRQ(ierr);
4118135c375SStefano Zampini     ierr = PetscViewerASCIIPrintf(viewer,"%D %D",mid,cid);CHKERRQ(ierr);
4128135c375SStefano Zampini     for (i=0;i<nv;i++) {
41311a4995dSStefano Zampini       ierr = PetscViewerASCIIPrintf(viewer," %d",vids[i]);CHKERRQ(ierr);
4148135c375SStefano Zampini     }
4158135c375SStefano Zampini     ierr = PetscViewerASCIIPrintf(viewer,"\n");CHKERRQ(ierr);
4168135c375SStefano Zampini   }
4178135c375SStefano Zampini 
418cc0d3ed7SStefano Zampini   /* boundary */
419cc0d3ed7SStefano Zampini   ierr = PetscViewerASCIIPrintf(viewer,"\nboundary\n");CHKERRQ(ierr);
420cc0d3ed7SStefano Zampini   if (!enable_boundary) {
421cc0d3ed7SStefano Zampini     ierr = PetscViewerASCIIPrintf(viewer,"%D\n",0);CHKERRQ(ierr);
422cc0d3ed7SStefano Zampini   } else {
42377eacf09SStefano Zampini     DMLabel  perLabel;
42477eacf09SStefano Zampini     PetscBT  bfaces;
42577eacf09SStefano Zampini     PetscInt fStart,fEnd,fEndInterior,*fcells;
42677eacf09SStefano Zampini     PetscInt *faces = NULL,fpc = 0,vpf = 0, vpc = 0;
427cc0d3ed7SStefano Zampini     PetscInt fv1[]     = {0,1},
428cc0d3ed7SStefano Zampini              fv2tri[]  = {0,1,
429cc0d3ed7SStefano Zampini                           1,2,
430cc0d3ed7SStefano Zampini                           2,0},
431cc0d3ed7SStefano Zampini              fv2quad[] = {0,1,
432cc0d3ed7SStefano Zampini                           1,2,
433cc0d3ed7SStefano Zampini                           2,3,
434cc0d3ed7SStefano Zampini                           3,0},
435cc0d3ed7SStefano Zampini              fv3tet[]  = {0,1,2,
436cc0d3ed7SStefano Zampini                           0,3,1,
437cc0d3ed7SStefano Zampini                           0,2,3,
438cc0d3ed7SStefano Zampini                           2,1,3},
439cc0d3ed7SStefano Zampini              fv3hex[]  = {0,1,2,3,
440cc0d3ed7SStefano Zampini                        4,5,6,7,
441cc0d3ed7SStefano Zampini                        0,3,5,4,
442cc0d3ed7SStefano Zampini                        2,1,7,6,
443cc0d3ed7SStefano Zampini                        3,2,6,5,
444cc0d3ed7SStefano Zampini                        0,4,7,1};
445cc0d3ed7SStefano Zampini 
4468135c375SStefano Zampini     /* determine orientation of boundary mesh */
4478135c375SStefano Zampini     if (cEnd-cStart) {
4488135c375SStefano Zampini       ierr = DMPlexGetConeSize(dm,cStart,&fpc);CHKERRQ(ierr);
4498135c375SStefano Zampini       switch(dim) {
4508135c375SStefano Zampini         case 1:
4518135c375SStefano Zampini           if (fpc != 2) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"Unhandled case faces per cell %D",fpc);
4528135c375SStefano Zampini           faces = fv1;
4538135c375SStefano Zampini           vpf = 1;
45477eacf09SStefano Zampini           vpc = 2;
4558135c375SStefano Zampini           break;
4568135c375SStefano Zampini         case 2:
4578135c375SStefano Zampini           switch (fpc) {
4588135c375SStefano Zampini             case 3:
4598135c375SStefano Zampini               faces = fv2tri;
4608135c375SStefano Zampini               vpf   = 2;
46177eacf09SStefano Zampini               vpc   = 3;
4628135c375SStefano Zampini               break;
4638135c375SStefano Zampini             case 4:
4648135c375SStefano Zampini               faces = fv2quad;
4658135c375SStefano Zampini               vpf   = 2;
46677eacf09SStefano Zampini               vpc   = 4;
4678135c375SStefano Zampini               break;
4688135c375SStefano Zampini             default:
4698135c375SStefano Zampini               SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"Unhandled case: faces per cell %D",fpc);
4708135c375SStefano Zampini               break;
4718135c375SStefano Zampini           }
4728135c375SStefano Zampini           break;
4738135c375SStefano Zampini         case 3:
4748135c375SStefano Zampini           switch (fpc) {
4758135c375SStefano Zampini             case 4:
4768135c375SStefano Zampini               faces = fv3tet;
4778135c375SStefano Zampini               vpf   = 3;
47877eacf09SStefano Zampini               vpc   = 4;
4798135c375SStefano Zampini               break;
4808135c375SStefano Zampini             case 6:
4818135c375SStefano Zampini               faces = fv3hex;
4828135c375SStefano Zampini               vpf   = 4;
48377eacf09SStefano Zampini               vpc   = 8;
4848135c375SStefano Zampini               break;
4858135c375SStefano Zampini             default:
4868135c375SStefano Zampini               SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"Unhandled case: faces per cell %D",fpc);
4878135c375SStefano Zampini               break;
4888135c375SStefano Zampini           }
4898135c375SStefano Zampini           break;
4908135c375SStefano Zampini         default:
4918135c375SStefano Zampini           SETERRQ(PetscObjectComm((PetscObject)dm),PETSC_ERR_SUP,"Unhandled dim");
4928135c375SStefano Zampini           break;
4938135c375SStefano Zampini       }
4948135c375SStefano Zampini     }
495cc0d3ed7SStefano Zampini     ierr = DMPlexGetHybridBounds(dm,NULL,&fEndInterior,NULL,NULL);CHKERRQ(ierr);
4968135c375SStefano Zampini     ierr = DMPlexGetHeightStratum(dm,1,&fStart,&fEnd);CHKERRQ(ierr);
4978135c375SStefano Zampini     fEnd = fEndInterior < 0 ? fEnd : fEndInterior;
49877eacf09SStefano Zampini     ierr = PetscBTCreate(fEnd-fStart,&bfaces);CHKERRQ(ierr);
49977eacf09SStefano Zampini     ierr = DMPlexGetMaxSizes(dm,NULL,&p);CHKERRQ(ierr);
50077eacf09SStefano Zampini     ierr = PetscMalloc1(p,&fcells);CHKERRQ(ierr);
50177eacf09SStefano Zampini     ierr = DMGetLabel(dm,"glvis_periodic_cut",&perLabel);CHKERRQ(ierr);
50277eacf09SStefano Zampini     if (!perLabel && localized) { /* this periodic cut can be moved up to DMPlex setup */
50377eacf09SStefano Zampini       ierr = DMCreateLabel(dm,"glvis_periodic_cut");CHKERRQ(ierr);
50477eacf09SStefano Zampini       ierr = DMGetLabel(dm,"glvis_periodic_cut",&perLabel);CHKERRQ(ierr);
50577eacf09SStefano Zampini       ierr = DMLabelSetDefaultValue(perLabel,1);CHKERRQ(ierr);
50677eacf09SStefano Zampini       for (p=cStart;p<cEnd;p++) {
50777eacf09SStefano Zampini         PetscInt dof;
50877eacf09SStefano Zampini         ierr = PetscSectionGetDof(coordSection,p,&dof);CHKERRQ(ierr);
50977eacf09SStefano Zampini         if (dof) {
51077eacf09SStefano Zampini           PetscInt    v,csize,cellClosureSize,*cellClosure = NULL,*vidxs = NULL;
51177eacf09SStefano Zampini           PetscScalar *vals = NULL;
51277eacf09SStefano Zampini 
51377eacf09SStefano Zampini           if (dof%sdim) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_USER,"Incompatible number of cell dofs %D and space dimension %D",dof,sdim);
51477eacf09SStefano Zampini           if (dof/sdim != vpc) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_SUP,"Incompatible number of cell dofs %D and vertices %D",dof/sdim,vpc);
51577eacf09SStefano Zampini           ierr = DMPlexVecGetClosure(dm,coordSection,coordinates,p,&csize,&vals);CHKERRQ(ierr);
51677eacf09SStefano Zampini           ierr = DMPlexGetTransitiveClosure(dm,p,PETSC_TRUE,&cellClosureSize,&cellClosure);CHKERRQ(ierr);
51777eacf09SStefano Zampini           for (v=0;v<cellClosureSize;v++)
51877eacf09SStefano Zampini             if (cellClosure[2*v] >= vStart && cellClosure[2*v] < vEnd) {
51977eacf09SStefano Zampini               vidxs = cellClosure + 2*v;
52077eacf09SStefano Zampini               break;
52177eacf09SStefano Zampini             }
52277eacf09SStefano Zampini           if (!vidxs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Missing vertices");
52377eacf09SStefano Zampini           for (v=0;v<vpc;v++) {
52477eacf09SStefano Zampini             PetscInt s;
52577eacf09SStefano Zampini             for (s=0;s<sdim;s++) {
52677eacf09SStefano Zampini               if (PetscAbsScalar(vals[v*sdim+s]-vals[v*sdim+s+vpc*sdim])>PETSC_MACHINE_EPSILON) {
52777eacf09SStefano Zampini                 ierr = DMLabelSetValue(perLabel,vidxs[2*v],2);CHKERRQ(ierr);
52877eacf09SStefano Zampini               }
52977eacf09SStefano Zampini             }
53077eacf09SStefano Zampini           }
53177eacf09SStefano Zampini           ierr = DMPlexRestoreTransitiveClosure(dm,p,PETSC_TRUE,&cellClosureSize,&cellClosure);CHKERRQ(ierr);
53277eacf09SStefano Zampini           ierr = DMPlexVecRestoreClosure(dm,coordSection,coordinates,p,&csize,&vals);CHKERRQ(ierr);
53377eacf09SStefano Zampini         }
53477eacf09SStefano Zampini       }
53577eacf09SStefano Zampini       if (dim > 1) {
53677eacf09SStefano Zampini         PetscInt eEnd,eStart,eEndInterior;
53777eacf09SStefano Zampini         ierr = DMPlexGetHybridBounds(dm,NULL,NULL,&eEndInterior,NULL);CHKERRQ(ierr);
53877eacf09SStefano Zampini         ierr = DMPlexGetDepthStratum(dm,1,&eStart,&eEnd);CHKERRQ(ierr);
53977eacf09SStefano Zampini         eEnd = eEndInterior < 0 ? eEnd : eEndInterior;
54077eacf09SStefano Zampini         for (p=eStart;p<eEnd;p++) {
54177eacf09SStefano Zampini           const PetscInt *cone;
54277eacf09SStefano Zampini           PetscInt       coneSize,i;
54377eacf09SStefano Zampini           PetscBool      ispe = PETSC_TRUE;
54477eacf09SStefano Zampini 
54577eacf09SStefano Zampini           ierr = DMPlexGetCone(dm,p,&cone);CHKERRQ(ierr);
54677eacf09SStefano Zampini           ierr = DMPlexGetConeSize(dm,p,&coneSize);CHKERRQ(ierr);
54777eacf09SStefano Zampini           for (i=0;i<coneSize;i++) {
54877eacf09SStefano Zampini             PetscInt v;
54977eacf09SStefano Zampini 
55077eacf09SStefano Zampini             ierr = DMLabelGetValue(perLabel,cone[i],&v);CHKERRQ(ierr);
55177eacf09SStefano Zampini             ispe = (PetscBool)(ispe && (v==2));
55277eacf09SStefano Zampini           }
55377eacf09SStefano Zampini           if (ispe && coneSize) {
55477eacf09SStefano Zampini             ierr = DMLabelSetValue(perLabel,p,2);CHKERRQ(ierr);
55577eacf09SStefano Zampini           }
55677eacf09SStefano Zampini         }
55777eacf09SStefano Zampini         if (dim > 2) {
55877eacf09SStefano Zampini           for (p=fStart;p<fEnd;p++) {
55977eacf09SStefano Zampini             const PetscInt *cone;
56077eacf09SStefano Zampini             PetscInt       coneSize,i;
56177eacf09SStefano Zampini             PetscBool      ispe = PETSC_TRUE;
56277eacf09SStefano Zampini 
56377eacf09SStefano Zampini             ierr = DMPlexGetCone(dm,p,&cone);CHKERRQ(ierr);
56477eacf09SStefano Zampini             ierr = DMPlexGetConeSize(dm,p,&coneSize);CHKERRQ(ierr);
56577eacf09SStefano Zampini             for (i=0;i<coneSize;i++) {
56677eacf09SStefano Zampini               PetscInt v;
56777eacf09SStefano Zampini 
56877eacf09SStefano Zampini               ierr = DMLabelGetValue(perLabel,cone[i],&v);CHKERRQ(ierr);
56977eacf09SStefano Zampini               ispe = (PetscBool)(ispe && (v==2));
57077eacf09SStefano Zampini             }
57177eacf09SStefano Zampini             if (ispe && coneSize) {
57277eacf09SStefano Zampini               ierr = DMLabelSetValue(perLabel,p,2);CHKERRQ(ierr);
57377eacf09SStefano Zampini             }
57477eacf09SStefano Zampini           }
57577eacf09SStefano Zampini         }
57677eacf09SStefano Zampini       }
57777eacf09SStefano Zampini     }
57877eacf09SStefano Zampini     for (p=fStart;p<fEnd;p++) {
57977eacf09SStefano Zampini       const PetscInt *support;
5808135c375SStefano Zampini       PetscInt       supportSize;
58177eacf09SStefano Zampini       PetscBool      isbf = PETSC_FALSE;
5828135c375SStefano Zampini 
5838135c375SStefano Zampini       ierr = DMPlexGetSupportSize(dm,p,&supportSize);CHKERRQ(ierr);
58477eacf09SStefano Zampini       if (ovl) {
5858135c375SStefano Zampini         PetscBool has_owned = PETSC_FALSE, has_ghost = PETSC_FALSE;
58677eacf09SStefano Zampini         PetscInt  i;
58777eacf09SStefano Zampini 
58877eacf09SStefano Zampini         ierr = DMPlexGetSupport(dm,p,&support);CHKERRQ(ierr);
58977eacf09SStefano Zampini         for (i=0;i<supportSize;i++) {
59077eacf09SStefano Zampini           if (PetscLikely(PetscBTLookup(pown,support[i]-cStart))) has_owned = PETSC_TRUE;
59177eacf09SStefano Zampini           else has_ghost = PETSC_TRUE;
59277eacf09SStefano Zampini         }
59377eacf09SStefano Zampini         isbf = (PetscBool)((supportSize == 1 && has_owned) || (supportSize > 1 && has_owned && has_ghost));
59477eacf09SStefano Zampini       } else {
59577eacf09SStefano Zampini         isbf = (PetscBool)(supportSize == 1);
59677eacf09SStefano Zampini       }
59777eacf09SStefano Zampini       if (!isbf && perLabel) {
59877eacf09SStefano Zampini         const PetscInt *cone;
59977eacf09SStefano Zampini         PetscInt       coneSize,i;
60077eacf09SStefano Zampini 
60177eacf09SStefano Zampini         ierr = DMPlexGetCone(dm,p,&cone);CHKERRQ(ierr);
60277eacf09SStefano Zampini         ierr = DMPlexGetConeSize(dm,p,&coneSize);CHKERRQ(ierr);
60377eacf09SStefano Zampini         isbf = PETSC_TRUE;
60477eacf09SStefano Zampini         for (i=0;i<coneSize;i++) {
60577eacf09SStefano Zampini           PetscInt v,d;
60677eacf09SStefano Zampini 
60777eacf09SStefano Zampini           ierr = DMLabelGetValue(perLabel,cone[i],&v);CHKERRQ(ierr);
60877eacf09SStefano Zampini           ierr = DMLabelGetDefaultValue(perLabel,&d);CHKERRQ(ierr);
60977eacf09SStefano Zampini           isbf = (PetscBool)(isbf && v != d);
61077eacf09SStefano Zampini         }
61177eacf09SStefano Zampini       }
61277eacf09SStefano Zampini       if (isbf) {
61377eacf09SStefano Zampini         ierr = PetscBTSet(bfaces,p-fStart);CHKERRQ(ierr);
61477eacf09SStefano Zampini       }
61577eacf09SStefano Zampini     }
61677eacf09SStefano Zampini     /* count boundary faces */
61777eacf09SStefano Zampini     for (p=fStart,bf=0;p<fEnd;p++) {
61877eacf09SStefano Zampini       if (PetscUnlikely(PetscBTLookup(bfaces,p-fStart))) {
61977eacf09SStefano Zampini         const PetscInt *support;
62077eacf09SStefano Zampini         PetscInt       supportSize,c;
6218135c375SStefano Zampini 
6228135c375SStefano Zampini         ierr = DMPlexGetSupportSize(dm,p,&supportSize);CHKERRQ(ierr);
6238135c375SStefano Zampini         ierr = DMPlexGetSupport(dm,p,&support);CHKERRQ(ierr);
62477eacf09SStefano Zampini         if (ovl) {
62577eacf09SStefano Zampini           for (c=0;c<supportSize;c++) {
62677eacf09SStefano Zampini             if (PetscLikely(PetscBTLookup(pown,support[c]-cStart))) {
62777eacf09SStefano Zampini               bf++;
6288135c375SStefano Zampini             }
62977eacf09SStefano Zampini           }
63077eacf09SStefano Zampini         } else bf += supportSize;
6318135c375SStefano Zampini       }
6328135c375SStefano Zampini     }
6338135c375SStefano Zampini     /* TODO: is this the label we want to use for marking boundary facets?
6348135c375SStefano Zampini        We should decide to have a single marker for these stuff
6358135c375SStefano Zampini        Proposal: DMSetBoundaryLabel?
6368135c375SStefano Zampini     */
6378135c375SStefano Zampini     ierr = DMGetLabel(dm,"marker",&label);CHKERRQ(ierr);
6388135c375SStefano Zampini     ierr = PetscViewerASCIIPrintf(viewer,"%D\n",bf);CHKERRQ(ierr);
6398135c375SStefano Zampini     for (p=fStart;p<fEnd;p++) {
64077eacf09SStefano Zampini       if (PetscUnlikely(PetscBTLookup(bfaces,p-fStart))) {
6418135c375SStefano Zampini         const PetscInt *support;
64277eacf09SStefano Zampini         PetscInt       supportSize,c,nc = 0;
6438135c375SStefano Zampini 
6448135c375SStefano Zampini         ierr = DMPlexGetSupportSize(dm,p,&supportSize);CHKERRQ(ierr);
6458135c375SStefano Zampini         ierr = DMPlexGetSupport(dm,p,&support);CHKERRQ(ierr);
64677eacf09SStefano Zampini         if (ovl) {
64777eacf09SStefano Zampini           for (c=0;c<supportSize;c++) {
64877eacf09SStefano Zampini             if (PetscLikely(PetscBTLookup(pown,support[c]-cStart))) {
64977eacf09SStefano Zampini               fcells[nc++] = support[c];
6508135c375SStefano Zampini             }
65177eacf09SStefano Zampini           }
65277eacf09SStefano Zampini         } else for (c=0;c<supportSize;c++) fcells[nc++] = support[c];
65377eacf09SStefano Zampini         for (c=0;c<nc;c++) {
65477eacf09SStefano Zampini           const    PetscInt *cone;
65577eacf09SStefano Zampini           int      vids[8];
65677eacf09SStefano Zampini           PetscInt i,cell,cl,nv,cid = -1,mid = -1;
6578135c375SStefano Zampini 
65877eacf09SStefano Zampini           cell = fcells[c];
65977eacf09SStefano Zampini           ierr = DMPlexGetCone(dm,cell,&cone);CHKERRQ(ierr);
66077eacf09SStefano Zampini           for (cl=0;cl<fpc;cl++)
66177eacf09SStefano Zampini             if (cone[cl] == p)
6628135c375SStefano Zampini               break;
6638135c375SStefano Zampini 
66477eacf09SStefano Zampini           /* face material id and type */
6658135c375SStefano Zampini           ierr = DMPlexGetPointMFEMCellID_Internal(dm,label,p,&mid,&cid);CHKERRQ(ierr);
6668135c375SStefano Zampini           ierr = PetscViewerASCIIPrintf(viewer,"%D %D",mid,cid);CHKERRQ(ierr);
66777eacf09SStefano Zampini           /* vertex ids */
66877eacf09SStefano Zampini           ierr = DMPlexGetPointMFEMVertexIDs_Internal(dm,cell,(localized && !hovec) ? coordSection : NULL,&nv,vids);CHKERRQ(ierr);
6698135c375SStefano Zampini           for (i=0;i<vpf;i++) {
67077eacf09SStefano Zampini             ierr = PetscViewerASCIIPrintf(viewer," %D",vids[faces[cl*vpf+i]]);CHKERRQ(ierr);
6718135c375SStefano Zampini           }
6728135c375SStefano Zampini           ierr = PetscViewerASCIIPrintf(viewer,"\n");CHKERRQ(ierr);
67377eacf09SStefano Zampini         }
67477eacf09SStefano Zampini         bf = bf-nc;
6758135c375SStefano Zampini       }
6768135c375SStefano Zampini     }
67777eacf09SStefano Zampini     if (bf) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Remaining boundary faces %D",bf);
67877eacf09SStefano Zampini     ierr = PetscBTDestroy(&bfaces);CHKERRQ(ierr);
67977eacf09SStefano Zampini     ierr = PetscFree(fcells);CHKERRQ(ierr);
6808135c375SStefano Zampini   }
6818135c375SStefano Zampini 
6828135c375SStefano Zampini   /* mark owned vertices */
6838135c375SStefano Zampini   if (ovl) {
6848135c375SStefano Zampini     ierr = PetscBTMemzero(vEnd-vStart,pown);CHKERRQ(ierr);
6858135c375SStefano Zampini     for (p=cStart;p<cEnd;p++) {
6868135c375SStefano Zampini       PetscInt i,closureSize,*closure = NULL;
6878135c375SStefano Zampini 
6888135c375SStefano Zampini       if (gNum[p-cStart] < 0) continue;
6898135c375SStefano Zampini       ierr = DMPlexGetTransitiveClosure(dm,p,PETSC_TRUE,&closureSize,&closure);CHKERRQ(ierr);
6908135c375SStefano Zampini       for (i=0;i<closureSize;i++) {
6918135c375SStefano Zampini         const PetscInt pp = closure[2*i];
6928135c375SStefano Zampini 
6938135c375SStefano Zampini         if (pp >= vStart && pp < vEnd) {
6948135c375SStefano Zampini           ierr = PetscBTSet(pown,pp-vStart);CHKERRQ(ierr);
6958135c375SStefano Zampini         }
6968135c375SStefano Zampini       }
6978135c375SStefano Zampini       ierr = DMPlexRestoreTransitiveClosure(dm,p,PETSC_TRUE,&closureSize,&closure);CHKERRQ(ierr);
6988135c375SStefano Zampini     }
6998135c375SStefano Zampini   }
7008135c375SStefano Zampini   if (globalNum) {
7018135c375SStefano Zampini     ierr = ISRestoreIndices(globalNum,&gNum);CHKERRQ(ierr);
7028135c375SStefano Zampini   }
7038135c375SStefano Zampini 
7048135c375SStefano Zampini   /* vertex_parents (Non-conforming meshes) */
7058135c375SStefano Zampini   parentSection  = NULL;
7068135c375SStefano Zampini   if (enable_ncmesh) {
7078135c375SStefano Zampini     ierr = DMPlexGetTree(dm,&parentSection,NULL,NULL,NULL,NULL);CHKERRQ(ierr);
7088135c375SStefano Zampini   }
7098135c375SStefano Zampini   if (parentSection) {
7108135c375SStefano Zampini     PetscInt vp,gvp;
7118135c375SStefano Zampini 
7128135c375SStefano Zampini     for (vp=0,p=vStart;p<vEnd;p++) {
7138135c375SStefano Zampini       DMLabel  dlabel;
7148135c375SStefano Zampini       PetscInt parent,depth;
7158135c375SStefano Zampini 
7168135c375SStefano Zampini       if (PetscUnlikely(ovl && !PetscBTLookup(pown,p-vStart))) continue;
7178135c375SStefano Zampini       ierr = DMPlexGetDepthLabel(dm,&dlabel);CHKERRQ(ierr);
7188135c375SStefano Zampini       ierr = DMLabelGetValue(dlabel,p,&depth);CHKERRQ(ierr);
7198135c375SStefano Zampini       ierr = DMPlexGetTreeParent(dm,p,&parent,NULL);CHKERRQ(ierr);
7208135c375SStefano Zampini       if (parent != p) vp++;
7218135c375SStefano Zampini     }
7228135c375SStefano Zampini     ierr = MPIU_Allreduce(&vp,&gvp,1,MPIU_INT,MPI_SUM,PetscObjectComm((PetscObject)dm));CHKERRQ(ierr);
7238135c375SStefano Zampini     if (gvp) {
7248135c375SStefano Zampini       PetscInt  maxsupp;
7258135c375SStefano Zampini       PetscBool *skip = NULL;
7268135c375SStefano Zampini 
7278135c375SStefano Zampini       ierr = PetscViewerASCIIPrintf(viewer,"\nvertex_parents\n");CHKERRQ(ierr);
7288135c375SStefano Zampini       ierr = PetscViewerASCIIPrintf(viewer,"%D\n",vp);CHKERRQ(ierr);
7298135c375SStefano Zampini       ierr = DMPlexGetMaxSizes(dm,NULL,&maxsupp);CHKERRQ(ierr);
7308135c375SStefano Zampini       ierr = PetscMalloc1(maxsupp,&skip);CHKERRQ(ierr);
7318135c375SStefano Zampini       for (p=vStart;p<vEnd;p++) {
7328135c375SStefano Zampini         DMLabel  dlabel;
7338135c375SStefano Zampini         PetscInt parent;
7348135c375SStefano Zampini 
7358135c375SStefano Zampini         if (PetscUnlikely(ovl && !PetscBTLookup(pown,p-vStart))) continue;
7368135c375SStefano Zampini         ierr = DMPlexGetDepthLabel(dm,&dlabel);CHKERRQ(ierr);
7378135c375SStefano Zampini         ierr = DMPlexGetTreeParent(dm,p,&parent,NULL);CHKERRQ(ierr);
7388135c375SStefano Zampini         if (parent != p) {
739d42aff11SStefano Zampini           int            vids[8] = { -1, -1, -1, -1, -1, -1, -1, -1 }; /* silent overzealous clang static analyzer */
74011a4995dSStefano Zampini           PetscInt       i,nv,size,n,numChildren,depth = -1;
7418135c375SStefano Zampini           const PetscInt *children;
7428135c375SStefano Zampini           ierr = DMPlexGetConeSize(dm,parent,&size);CHKERRQ(ierr);
7438135c375SStefano Zampini           switch (size) {
7448135c375SStefano Zampini             case 2: /* edge */
7458135c375SStefano Zampini               nv   = 0;
746cc0d3ed7SStefano Zampini               ierr = DMPlexGetPointMFEMVertexIDs_Internal(dm,parent,localized ? coordSection : NULL,&nv,vids);CHKERRQ(ierr);
74777eacf09SStefano Zampini               ierr = DMPlexInvertCell(dim,nv,vids);CHKERRQ(ierr);
7488135c375SStefano Zampini               ierr = PetscViewerASCIIPrintf(viewer,"%D",p-vStart);CHKERRQ(ierr);
7498135c375SStefano Zampini               for (i=0;i<nv;i++) {
75011a4995dSStefano Zampini                 ierr = PetscViewerASCIIPrintf(viewer," %d",vids[i]);CHKERRQ(ierr);
7518135c375SStefano Zampini               }
7528135c375SStefano Zampini               ierr = PetscViewerASCIIPrintf(viewer,"\n");CHKERRQ(ierr);
7538135c375SStefano Zampini               vp--;
7548135c375SStefano Zampini               break;
7558135c375SStefano Zampini             case 4: /* face */
7568135c375SStefano Zampini               ierr = DMPlexGetTreeChildren(dm,parent,&numChildren,&children);CHKERRQ(ierr);
7578135c375SStefano Zampini               for (n=0;n<numChildren;n++) {
7588135c375SStefano Zampini                 ierr = DMLabelGetValue(dlabel,children[n],&depth);CHKERRQ(ierr);
7598135c375SStefano Zampini                 if (!depth) {
7608135c375SStefano Zampini                   const PetscInt *hvsupp,*hesupp,*cone;
7618135c375SStefano Zampini                   PetscInt       hvsuppSize,hesuppSize,coneSize;
762451a39c7SStefano Zampini                   PetscInt       hv = children[n],he = -1,f;
7638135c375SStefano Zampini 
764451a39c7SStefano Zampini                   ierr = PetscMemzero(skip,maxsupp*sizeof(PetscBool));CHKERRQ(ierr);
7658135c375SStefano Zampini                   ierr = DMPlexGetSupportSize(dm,hv,&hvsuppSize);CHKERRQ(ierr);
7668135c375SStefano Zampini                   ierr = DMPlexGetSupport(dm,hv,&hvsupp);CHKERRQ(ierr);
7678135c375SStefano Zampini                   for (i=0;i<hvsuppSize;i++) {
7688135c375SStefano Zampini                     PetscInt ep;
7698135c375SStefano Zampini                     ierr = DMPlexGetTreeParent(dm,hvsupp[i],&ep,NULL);CHKERRQ(ierr);
7708135c375SStefano Zampini                     if (ep != hvsupp[i]) {
7718135c375SStefano Zampini                       he = hvsupp[i];
7728135c375SStefano Zampini                     } else {
7738135c375SStefano Zampini                       skip[i] = PETSC_TRUE;
7748135c375SStefano Zampini                     }
7758135c375SStefano Zampini                   }
776451a39c7SStefano Zampini                   if (he == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_SUP,"Vertex %D support size %D: hanging edge not found",hv,hvsuppSize);
7778135c375SStefano Zampini                   ierr    = DMPlexGetCone(dm,he,&cone);CHKERRQ(ierr);
77811a4995dSStefano Zampini                   vids[0] = (int)((cone[0] == hv) ? cone[1] : cone[0]);
7798135c375SStefano Zampini                   ierr    = DMPlexGetSupportSize(dm,he,&hesuppSize);CHKERRQ(ierr);
7808135c375SStefano Zampini                   ierr    = DMPlexGetSupport(dm,he,&hesupp);CHKERRQ(ierr);
7818135c375SStefano Zampini                   for (f=0;f<hesuppSize;f++) {
7828135c375SStefano Zampini                     PetscInt j;
7838135c375SStefano Zampini 
7848135c375SStefano Zampini                     ierr = DMPlexGetCone(dm,hesupp[f],&cone);CHKERRQ(ierr);
7858135c375SStefano Zampini                     ierr = DMPlexGetConeSize(dm,hesupp[f],&coneSize);CHKERRQ(ierr);
7868135c375SStefano Zampini                     for (j=0;j<coneSize;j++) {
7878135c375SStefano Zampini                       PetscInt k;
7888135c375SStefano Zampini                       for (k=0;k<hvsuppSize;k++) {
7898135c375SStefano Zampini                         if (hvsupp[k] == cone[j]) {
7908135c375SStefano Zampini                           skip[k] = PETSC_TRUE;
7918135c375SStefano Zampini                           break;
7928135c375SStefano Zampini                         }
7938135c375SStefano Zampini                       }
7948135c375SStefano Zampini                     }
7958135c375SStefano Zampini                   }
7968135c375SStefano Zampini                   for (i=0;i<hvsuppSize;i++) {
7978135c375SStefano Zampini                     if (!skip[i]) {
7988135c375SStefano Zampini                       ierr = DMPlexGetCone(dm,hvsupp[i],&cone);CHKERRQ(ierr);
79911a4995dSStefano Zampini                       vids[1] = (int)((cone[0] == hv) ? cone[1] : cone[0]);
8008135c375SStefano Zampini                     }
8018135c375SStefano Zampini                   }
8028135c375SStefano Zampini                   ierr = PetscViewerASCIIPrintf(viewer,"%D",hv-vStart);CHKERRQ(ierr);
8038135c375SStefano Zampini                   for (i=0;i<2;i++) {
80411a4995dSStefano Zampini                     ierr = PetscViewerASCIIPrintf(viewer," %d",vids[i]-vStart);CHKERRQ(ierr);
8058135c375SStefano Zampini                   }
8068135c375SStefano Zampini                   ierr = PetscViewerASCIIPrintf(viewer,"\n");CHKERRQ(ierr);
8078135c375SStefano Zampini                   vp--;
8088135c375SStefano Zampini                 }
8098135c375SStefano Zampini               }
8108135c375SStefano Zampini               break;
8118135c375SStefano Zampini             default:
8128135c375SStefano Zampini               SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"Don't know how to deal with support size %d",size);
8138135c375SStefano Zampini           }
8148135c375SStefano Zampini         }
8158135c375SStefano Zampini       }
8168135c375SStefano Zampini       ierr = PetscFree(skip);CHKERRQ(ierr);
8178135c375SStefano Zampini     }
8188135c375SStefano Zampini     if (vp) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Unexpected %D hanging vertices",vp);
8198135c375SStefano Zampini   }
8208135c375SStefano Zampini   ierr = PetscBTDestroy(&pown);CHKERRQ(ierr);
8218135c375SStefano Zampini 
8228135c375SStefano Zampini   /* vertices */
82377eacf09SStefano Zampini   if (hovec) { /* higher-order meshes */
82477eacf09SStefano Zampini     const char *fec;
82577eacf09SStefano Zampini     PetscInt   i,n;
82677eacf09SStefano Zampini 
82777eacf09SStefano Zampini     ierr = PetscViewerASCIIPrintf(viewer,"\nvertices\n");CHKERRQ(ierr);
82877eacf09SStefano Zampini     ierr = PetscViewerASCIIPrintf(viewer,"%D\n",vEnd-vStart);CHKERRQ(ierr);
82977eacf09SStefano Zampini     ierr = PetscViewerASCIIPrintf(viewer,"nodes\n");CHKERRQ(ierr);
83077eacf09SStefano Zampini     ierr = PetscObjectGetName((PetscObject)hovec,&fec);CHKERRQ(ierr);
83177eacf09SStefano Zampini     ierr = PetscViewerASCIIPrintf(viewer,"FiniteElementSpace\n");CHKERRQ(ierr);
83277eacf09SStefano Zampini     ierr = PetscViewerASCIIPrintf(viewer,"FiniteElementCollection: %s\n",fec);CHKERRQ(ierr);
83377eacf09SStefano Zampini     ierr = PetscViewerASCIIPrintf(viewer,"VDim: %D\n",sdim);CHKERRQ(ierr);
83477eacf09SStefano Zampini     ierr = PetscViewerASCIIPrintf(viewer,"Ordering: 1\n\n");CHKERRQ(ierr); /*Ordering::byVDIM*/
83577eacf09SStefano Zampini     ierr = VecGetArrayRead(hovec,&array);CHKERRQ(ierr);
83677eacf09SStefano Zampini     ierr = VecGetLocalSize(hovec,&n);CHKERRQ(ierr);
83777eacf09SStefano Zampini     if (n%sdim) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_USER,"Size of local coordinate vector %D incompatible with space dimension %D",n,sdim);
83877eacf09SStefano Zampini     for (i=0;i<n/sdim;i++) {
83977eacf09SStefano Zampini       PetscInt s;
84077eacf09SStefano Zampini       for (s=0;s<sdim;s++) {
84177eacf09SStefano Zampini         ierr = PetscViewerASCIIPrintf(viewer,fmt,PetscRealPart(array[i*sdim+s]));CHKERRQ(ierr);
84277eacf09SStefano Zampini       }
84377eacf09SStefano Zampini       ierr = PetscViewerASCIIPrintf(viewer,"\n");CHKERRQ(ierr);
84477eacf09SStefano Zampini     }
84577eacf09SStefano Zampini     ierr = VecRestoreArrayRead(hovec,&array);CHKERRQ(ierr);
84677eacf09SStefano Zampini   } else {
847cc0d3ed7SStefano Zampini     ierr = VecGetLocalSize(coordinates,&nvert);CHKERRQ(ierr);
8488135c375SStefano Zampini     ierr = PetscViewerASCIIPrintf(viewer,"\nvertices\n");CHKERRQ(ierr);
849cc0d3ed7SStefano Zampini     ierr = PetscViewerASCIIPrintf(viewer,"%D\n",nvert/sdim);CHKERRQ(ierr);
8508135c375SStefano Zampini     ierr = PetscViewerASCIIPrintf(viewer,"%D\n",sdim);CHKERRQ(ierr);
8518135c375SStefano Zampini     ierr = VecGetArrayRead(coordinates,&array);CHKERRQ(ierr);
852cc0d3ed7SStefano Zampini     for (p=0;p<nvert/sdim;p++) {
853cc0d3ed7SStefano Zampini       PetscInt s;
854cc0d3ed7SStefano Zampini       for (s=0;s<sdim;s++) {
85577eacf09SStefano Zampini         ierr = PetscViewerASCIIPrintf(viewer,fmt,PetscRealPart(array[p*sdim+s]));CHKERRQ(ierr);
8568135c375SStefano Zampini       }
857cc0d3ed7SStefano Zampini       ierr = PetscViewerASCIIPrintf(viewer,"\n");CHKERRQ(ierr);
8588135c375SStefano Zampini     }
8598135c375SStefano Zampini     ierr = VecRestoreArrayRead(coordinates,&array);CHKERRQ(ierr);
86077eacf09SStefano Zampini   }
8618135c375SStefano Zampini   PetscFunctionReturn(0);
8628135c375SStefano Zampini }
8638135c375SStefano Zampini 
8648135c375SStefano Zampini /* dispatching, prints through the socket by prepending the mesh keyword to the usual ASCII dump */
8658135c375SStefano Zampini PETSC_INTERN PetscErrorCode DMPlexView_GLVis(DM dm, PetscViewer viewer)
8668135c375SStefano Zampini {
8678135c375SStefano Zampini   PetscErrorCode ierr;
8688135c375SStefano Zampini   PetscBool      isglvis,isascii;
8698135c375SStefano Zampini 
8708135c375SStefano Zampini   PetscFunctionBegin;
8718135c375SStefano Zampini   PetscValidHeaderSpecific(dm,DM_CLASSID,1);
8728135c375SStefano Zampini   PetscValidHeaderSpecific(viewer,PETSC_VIEWER_CLASSID,2);
8738135c375SStefano Zampini   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERGLVIS,&isglvis);CHKERRQ(ierr);
8748135c375SStefano Zampini   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&isascii);CHKERRQ(ierr);
8758135c375SStefano Zampini   if (!isglvis && !isascii) SETERRQ(PetscObjectComm((PetscObject)viewer),PETSC_ERR_SUP,"Viewer must be of type VIEWERGLVIS or VIEWERASCII");
8768135c375SStefano Zampini   if (isglvis) {
8778135c375SStefano Zampini     PetscViewer          view;
8788135c375SStefano Zampini     PetscViewerGLVisType type;
8798135c375SStefano Zampini 
8808135c375SStefano Zampini     ierr = PetscViewerGLVisGetType_Private(viewer,&type);CHKERRQ(ierr);
8818135c375SStefano Zampini     ierr = PetscViewerGLVisGetDMWindow_Private(viewer,&view);CHKERRQ(ierr);
8828135c375SStefano Zampini     if (view) { /* in the socket case, it may happen that the connection failed */
8838135c375SStefano Zampini       if (type == PETSC_VIEWER_GLVIS_SOCKET) {
8848135c375SStefano Zampini         PetscMPIInt size,rank;
8858135c375SStefano Zampini         ierr = MPI_Comm_size(PetscObjectComm((PetscObject)dm),&size);CHKERRQ(ierr);
8868135c375SStefano Zampini         ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)dm),&rank);CHKERRQ(ierr);
8878135c375SStefano Zampini         ierr = PetscViewerASCIIPrintf(view,"parallel %D %D\nmesh\n",size,rank);CHKERRQ(ierr);
8888135c375SStefano Zampini       }
8898135c375SStefano Zampini       ierr = DMPlexView_GLVis_ASCII(dm,view);CHKERRQ(ierr);
8908135c375SStefano Zampini       ierr = PetscViewerFlush(view);CHKERRQ(ierr);
8918135c375SStefano Zampini       if (type == PETSC_VIEWER_GLVIS_SOCKET) {
8928135c375SStefano Zampini         PetscInt    dim;
8938135c375SStefano Zampini         const char* name;
8948135c375SStefano Zampini 
8958135c375SStefano Zampini         ierr = PetscObjectGetName((PetscObject)dm,&name);CHKERRQ(ierr);
8968135c375SStefano Zampini         ierr = DMGetDimension(dm,&dim);CHKERRQ(ierr);
8978135c375SStefano Zampini         ierr = PetscViewerGLVisInitWindow_Private(view,PETSC_TRUE,dim,name);CHKERRQ(ierr);
8988135c375SStefano Zampini         ierr = PetscBarrier((PetscObject)dm);CHKERRQ(ierr);
8998135c375SStefano Zampini       }
9008135c375SStefano Zampini     }
9018135c375SStefano Zampini   } else {
9028135c375SStefano Zampini     ierr = DMPlexView_GLVis_ASCII(dm,viewer);CHKERRQ(ierr);
9038135c375SStefano Zampini   }
9048135c375SStefano Zampini   PetscFunctionReturn(0);
9058135c375SStefano Zampini }
906