18135c375SStefano Zampini #include <petsc/private/glvisviewerimpl.h> 28135c375SStefano Zampini #include <petsc/private/petscimpl.h> 38135c375SStefano Zampini #include <petsc/private/dmpleximpl.h> 48135c375SStefano Zampini #include <petscbt.h> 58135c375SStefano Zampini #include <petscdmplex.h> 68135c375SStefano Zampini #include <petscsf.h> 78135c375SStefano Zampini #include <petscds.h> 88135c375SStefano Zampini 98135c375SStefano Zampini typedef struct { 108135c375SStefano Zampini PetscInt nf; 118135c375SStefano Zampini VecScatter *scctx; 128135c375SStefano Zampini } GLVisViewerCtx; 138135c375SStefano Zampini 148135c375SStefano Zampini static PetscErrorCode DestroyGLVisViewerCtx_Private(void *vctx) 158135c375SStefano Zampini { 168135c375SStefano Zampini GLVisViewerCtx *ctx = (GLVisViewerCtx*)vctx; 178135c375SStefano Zampini PetscInt i; 188135c375SStefano Zampini PetscErrorCode ierr; 198135c375SStefano Zampini 208135c375SStefano Zampini PetscFunctionBegin; 218135c375SStefano Zampini for (i=0;i<ctx->nf;i++) { 228135c375SStefano Zampini ierr = VecScatterDestroy(&ctx->scctx[i]);CHKERRQ(ierr); 238135c375SStefano Zampini } 248135c375SStefano Zampini ierr = PetscFree(ctx->scctx);CHKERRQ(ierr); 2551f51421SSatish Balay ierr = PetscFree(vctx);CHKERRQ(ierr); 268135c375SStefano Zampini PetscFunctionReturn(0); 278135c375SStefano Zampini } 288135c375SStefano Zampini 298135c375SStefano Zampini static PetscErrorCode DMPlexSampleGLVisFields_Private(PetscObject oX, PetscInt nf, PetscObject oXfield[], void *vctx) 308135c375SStefano Zampini { 318135c375SStefano Zampini GLVisViewerCtx *ctx = (GLVisViewerCtx*)vctx; 328135c375SStefano Zampini PetscInt f; 338135c375SStefano Zampini PetscErrorCode ierr; 348135c375SStefano Zampini 358135c375SStefano Zampini PetscFunctionBegin; 368135c375SStefano Zampini for (f=0;f<nf;f++) { 378135c375SStefano Zampini ierr = VecScatterBegin(ctx->scctx[f],(Vec)oX,(Vec)oXfield[f],INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 388135c375SStefano Zampini ierr = VecScatterEnd(ctx->scctx[f],(Vec)oX,(Vec)oXfield[f],INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 398135c375SStefano Zampini } 408135c375SStefano Zampini PetscFunctionReturn(0); 418135c375SStefano Zampini } 428135c375SStefano Zampini 438135c375SStefano Zampini /* for FEM, it works for H1 fields only and extracts dofs at cell vertices, discarding any other dof */ 448135c375SStefano Zampini PetscErrorCode DMSetUpGLVisViewer_Plex(PetscObject odm, PetscViewer viewer) 458135c375SStefano Zampini { 468135c375SStefano Zampini DM dm = (DM)odm; 474cac2994SStefano Zampini Vec xlocal,xfield,*Ufield; 488135c375SStefano Zampini PetscDS ds; 498135c375SStefano Zampini IS globalNum,isfield; 508135c375SStefano Zampini PetscBT vown; 518135c375SStefano Zampini char **fieldname = NULL,**fec_type = NULL; 528135c375SStefano Zampini const PetscInt *gNum; 53bb77a09fSStefano Zampini PetscInt *nlocal,*bs,*idxs,*dims; 548135c375SStefano Zampini PetscInt f,maxfields,nfields,c,totc,totdofs,Nv,cum,i; 5511a4995dSStefano Zampini PetscInt dim,cStart,cEnd,cEndInterior,vStart,vEnd; 568135c375SStefano Zampini GLVisViewerCtx *ctx; 578135c375SStefano Zampini PetscSection s; 588135c375SStefano Zampini PetscErrorCode ierr; 598135c375SStefano Zampini 608135c375SStefano Zampini PetscFunctionBegin; 618135c375SStefano Zampini ierr = DMGetDimension(dm,&dim);CHKERRQ(ierr); 628135c375SStefano Zampini ierr = DMPlexGetDepthStratum(dm,0,&vStart,&vEnd);CHKERRQ(ierr); 638135c375SStefano Zampini ierr = DMPlexGetHeightStratum(dm,0,&cStart,&cEnd);CHKERRQ(ierr); 648135c375SStefano Zampini ierr = DMPlexGetHybridBounds(dm, &cEndInterior, NULL, NULL, NULL);CHKERRQ(ierr); 658135c375SStefano Zampini cEnd = cEndInterior < 0 ? cEnd : cEndInterior; 668135c375SStefano Zampini ierr = DMPlexGetCellNumbering(dm,&globalNum);CHKERRQ(ierr); 678135c375SStefano Zampini ierr = ISGetIndices(globalNum,&gNum);CHKERRQ(ierr); 688135c375SStefano Zampini ierr = PetscBTCreate(vEnd-vStart,&vown);CHKERRQ(ierr); 698135c375SStefano Zampini for (c = cStart, totc = 0; c < cEnd; c++) { 708135c375SStefano Zampini if (gNum[c-cStart] >= 0) { 718135c375SStefano Zampini PetscInt i,numPoints,*points = NULL; 728135c375SStefano Zampini 738135c375SStefano Zampini totc++; 748135c375SStefano Zampini ierr = DMPlexGetTransitiveClosure(dm,c,PETSC_TRUE,&numPoints,&points);CHKERRQ(ierr); 758135c375SStefano Zampini for (i=0;i<numPoints*2;i+= 2) { 768135c375SStefano Zampini if ((points[i] >= vStart) && (points[i] < vEnd)) { 778135c375SStefano Zampini ierr = PetscBTSet(vown,points[i]-vStart);CHKERRQ(ierr); 788135c375SStefano Zampini } 798135c375SStefano Zampini } 808135c375SStefano Zampini ierr = DMPlexRestoreTransitiveClosure(dm,c,PETSC_TRUE,&numPoints,&points);CHKERRQ(ierr); 818135c375SStefano Zampini } 828135c375SStefano Zampini } 8377eacf09SStefano Zampini for (f=0,Nv=0;f<vEnd-vStart;f++) if (PetscLikely(PetscBTLookup(vown,f))) Nv++; 848135c375SStefano Zampini 858135c375SStefano Zampini ierr = DMCreateLocalVector(dm,&xlocal);CHKERRQ(ierr); 868135c375SStefano Zampini ierr = VecGetLocalSize(xlocal,&totdofs);CHKERRQ(ierr); 87*e87a4003SBarry Smith ierr = DMGetSection(dm,&s);CHKERRQ(ierr); 888135c375SStefano Zampini ierr = PetscSectionGetNumFields(s,&nfields);CHKERRQ(ierr); 898135c375SStefano Zampini for (f=0,maxfields=0;f<nfields;f++) { 908135c375SStefano Zampini PetscInt bs; 918135c375SStefano Zampini 928135c375SStefano Zampini ierr = PetscSectionGetFieldComponents(s,f,&bs);CHKERRQ(ierr); 938135c375SStefano Zampini maxfields += bs; 948135c375SStefano Zampini } 954cac2994SStefano Zampini ierr = PetscCalloc7(maxfields,&fieldname,maxfields,&nlocal,maxfields,&bs,maxfields,&dims,maxfields,&fec_type,totdofs,&idxs,maxfields,&Ufield);CHKERRQ(ierr); 968135c375SStefano Zampini ierr = PetscNew(&ctx);CHKERRQ(ierr); 978135c375SStefano Zampini ierr = PetscCalloc1(maxfields,&ctx->scctx);CHKERRQ(ierr); 988135c375SStefano Zampini ierr = DMGetDS(dm,&ds);CHKERRQ(ierr); 998135c375SStefano Zampini if (ds) { 1008135c375SStefano Zampini for (f=0;f<nfields;f++) { 1018135c375SStefano Zampini const char* fname; 1028135c375SStefano Zampini char name[256]; 1038135c375SStefano Zampini PetscObject disc; 1048135c375SStefano Zampini size_t len; 1058135c375SStefano Zampini 1068135c375SStefano Zampini ierr = PetscSectionGetFieldName(s,f,&fname);CHKERRQ(ierr); 1078135c375SStefano Zampini ierr = PetscStrlen(fname,&len);CHKERRQ(ierr); 1088135c375SStefano Zampini if (len) { 1098135c375SStefano Zampini ierr = PetscStrcpy(name,fname);CHKERRQ(ierr); 1108135c375SStefano Zampini } else { 111bfadf1d8SStefano Zampini ierr = PetscSNPrintf(name,256,"Field%D",f);CHKERRQ(ierr); 1128135c375SStefano Zampini } 1138135c375SStefano Zampini ierr = PetscDSGetDiscretization(ds,f,&disc);CHKERRQ(ierr); 1148135c375SStefano Zampini if (disc) { 1158135c375SStefano Zampini PetscClassId id; 1168135c375SStefano Zampini PetscInt Nc; 1178135c375SStefano Zampini char fec[64]; 1188135c375SStefano Zampini 1198135c375SStefano Zampini ierr = PetscObjectGetClassId(disc, &id);CHKERRQ(ierr); 1208135c375SStefano Zampini if (id == PETSCFE_CLASSID) { 1218135c375SStefano Zampini PetscFE fem = (PetscFE)disc; 1228135c375SStefano Zampini PetscDualSpace sp; 1238135c375SStefano Zampini PetscDualSpaceType spname; 1248135c375SStefano Zampini PetscInt order; 1258135c375SStefano Zampini PetscBool islag,continuous,H1 = PETSC_TRUE; 1268135c375SStefano Zampini 1278135c375SStefano Zampini ierr = PetscFEGetNumComponents(fem,&Nc);CHKERRQ(ierr); 1288135c375SStefano Zampini ierr = PetscFEGetDualSpace(fem,&sp);CHKERRQ(ierr); 1298135c375SStefano Zampini ierr = PetscDualSpaceGetType(sp,&spname);CHKERRQ(ierr); 1308135c375SStefano Zampini ierr = PetscStrcmp(spname,PETSCDUALSPACELAGRANGE,&islag);CHKERRQ(ierr); 1318135c375SStefano Zampini if (!islag) SETERRQ(PetscObjectComm((PetscObject)dm),PETSC_ERR_SUP,"Unsupported dual space"); 1328135c375SStefano Zampini ierr = PetscDualSpaceLagrangeGetContinuity(sp,&continuous);CHKERRQ(ierr); 1338135c375SStefano Zampini if (!continuous) SETERRQ(PetscObjectComm((PetscObject)dm),PETSC_ERR_SUP,"Discontinuous space visualization currently unsupported"); 1348135c375SStefano Zampini ierr = PetscDualSpaceGetOrder(sp,&order);CHKERRQ(ierr); 1358135c375SStefano Zampini if (continuous && order > 0) { 136bfadf1d8SStefano Zampini ierr = PetscSNPrintf(fec,64,"FiniteElementCollection: H1_%DD_P1",dim);CHKERRQ(ierr); 1378135c375SStefano Zampini } else { 1388135c375SStefano Zampini H1 = PETSC_FALSE; 139bfadf1d8SStefano Zampini ierr = PetscSNPrintf(fec,64,"FiniteElementCollection: L2_%DD_P%D",dim,order);CHKERRQ(ierr); 1408135c375SStefano Zampini } 1418135c375SStefano Zampini ierr = PetscStrallocpy(name,&fieldname[ctx->nf]);CHKERRQ(ierr); 1428135c375SStefano Zampini bs[ctx->nf] = Nc; 143bb77a09fSStefano Zampini dims[ctx->nf] = dim; 1448135c375SStefano Zampini if (H1) { 1458135c375SStefano Zampini nlocal[ctx->nf] = Nc * Nv; 1468135c375SStefano Zampini ierr = PetscStrallocpy(fec,&fec_type[ctx->nf]);CHKERRQ(ierr); 1478135c375SStefano Zampini ierr = VecCreateSeq(PETSC_COMM_SELF,Nv*Nc,&xfield);CHKERRQ(ierr); 1488135c375SStefano Zampini for (i=0,cum=0;i<vEnd-vStart;i++) { 1498135c375SStefano Zampini PetscInt j,off; 1508135c375SStefano Zampini 1518135c375SStefano Zampini if (PetscUnlikely(!PetscBTLookup(vown,i))) continue; 1528135c375SStefano Zampini ierr = PetscSectionGetFieldOffset(s,i+vStart,f,&off);CHKERRQ(ierr); 1538135c375SStefano Zampini for (j=0;j<Nc;j++) idxs[cum++] = off + j; 1548135c375SStefano Zampini } 1558135c375SStefano Zampini ierr = ISCreateGeneral(PetscObjectComm((PetscObject)xlocal),Nv*Nc,idxs,PETSC_USE_POINTER,&isfield);CHKERRQ(ierr); 1568135c375SStefano Zampini } else { 1578135c375SStefano Zampini nlocal[ctx->nf] = Nc * totc; 1588135c375SStefano Zampini ierr = PetscStrallocpy(fec,&fec_type[ctx->nf]);CHKERRQ(ierr); 1598135c375SStefano Zampini ierr = VecCreateSeq(PETSC_COMM_SELF,Nc*totc,&xfield);CHKERRQ(ierr); 1608135c375SStefano Zampini for (i=0,cum=0;i<cEnd-cStart;i++) { 1618135c375SStefano Zampini PetscInt j,off; 1628135c375SStefano Zampini 1638135c375SStefano Zampini if (PetscUnlikely(gNum[i] < 0)) continue; 1648135c375SStefano Zampini ierr = PetscSectionGetFieldOffset(s,i+cStart,f,&off);CHKERRQ(ierr); 1658135c375SStefano Zampini for (j=0;j<Nc;j++) idxs[cum++] = off + j; 1668135c375SStefano Zampini } 1678135c375SStefano Zampini ierr = ISCreateGeneral(PetscObjectComm((PetscObject)xlocal),totc*Nc,idxs,PETSC_USE_POINTER,&isfield);CHKERRQ(ierr); 1688135c375SStefano Zampini } 1698135c375SStefano Zampini ierr = VecScatterCreate(xlocal,isfield,xfield,NULL,&ctx->scctx[ctx->nf]);CHKERRQ(ierr); 1708135c375SStefano Zampini ierr = VecDestroy(&xfield);CHKERRQ(ierr); 1718135c375SStefano Zampini ierr = ISDestroy(&isfield);CHKERRQ(ierr); 1728135c375SStefano Zampini ctx->nf++; 1738135c375SStefano Zampini } else if (id == PETSCFV_CLASSID) { 1748135c375SStefano Zampini PetscInt c; 1758135c375SStefano Zampini 1768135c375SStefano Zampini ierr = PetscFVGetNumComponents((PetscFV)disc,&Nc);CHKERRQ(ierr); 177bfadf1d8SStefano Zampini ierr = PetscSNPrintf(fec,64,"FiniteElementCollection: L2_%DD_P0",dim);CHKERRQ(ierr); 1788135c375SStefano Zampini for (c = 0; c < Nc; c++) { 1798135c375SStefano Zampini char comp[256]; 180bfadf1d8SStefano Zampini ierr = PetscSNPrintf(comp,256,"%s-Comp%D",name,c);CHKERRQ(ierr); 1818135c375SStefano Zampini ierr = PetscStrallocpy(comp,&fieldname[ctx->nf]);CHKERRQ(ierr); 1828135c375SStefano Zampini bs[ctx->nf] = 1; /* Does PetscFV support components with different block size? */ 1838135c375SStefano Zampini nlocal[ctx->nf] = totc; 184bb77a09fSStefano Zampini dims[ctx->nf] = dim; 1858135c375SStefano Zampini ierr = PetscStrallocpy(fec,&fec_type[ctx->nf]);CHKERRQ(ierr); 1868135c375SStefano Zampini ierr = VecCreateSeq(PETSC_COMM_SELF,totc,&xfield);CHKERRQ(ierr); 1878135c375SStefano Zampini for (i=0,cum=0;i<cEnd-cStart;i++) { 1888135c375SStefano Zampini PetscInt off; 1898135c375SStefano Zampini 1908135c375SStefano Zampini if (PetscUnlikely(gNum[i])<0) continue; 1918135c375SStefano Zampini ierr = PetscSectionGetFieldOffset(s,i+cStart,f,&off);CHKERRQ(ierr); 1928135c375SStefano Zampini idxs[cum++] = off + c; 1938135c375SStefano Zampini } 1948135c375SStefano Zampini ierr = ISCreateGeneral(PetscObjectComm((PetscObject)xlocal),totc,idxs,PETSC_USE_POINTER,&isfield);CHKERRQ(ierr); 1958135c375SStefano Zampini ierr = VecScatterCreate(xlocal,isfield,xfield,NULL,&ctx->scctx[ctx->nf]);CHKERRQ(ierr); 1968135c375SStefano Zampini ierr = VecDestroy(&xfield);CHKERRQ(ierr); 1978135c375SStefano Zampini ierr = ISDestroy(&isfield);CHKERRQ(ierr); 1988135c375SStefano Zampini ctx->nf++; 1998135c375SStefano Zampini } 2008135c375SStefano Zampini } else SETERRQ1(PetscObjectComm((PetscObject)dm),PETSC_ERR_ARG_WRONG,"Unknown discretization type for field %D",f); 2018135c375SStefano Zampini } else SETERRQ1(PetscObjectComm((PetscObject)dm),PETSC_ERR_SUP,"Missing discretization for field %D",f); 2028135c375SStefano Zampini } 2038135c375SStefano Zampini } else SETERRQ(PetscObjectComm((PetscObject)dm),PETSC_ERR_SUP,"Needs a DS attached to the DM"); 2048135c375SStefano Zampini ierr = PetscBTDestroy(&vown);CHKERRQ(ierr); 2058135c375SStefano Zampini ierr = VecDestroy(&xlocal);CHKERRQ(ierr); 2068135c375SStefano Zampini ierr = ISRestoreIndices(globalNum,&gNum);CHKERRQ(ierr); 2078135c375SStefano Zampini 2084cac2994SStefano Zampini /* create work vectors */ 2094cac2994SStefano Zampini for (f=0;f<ctx->nf;f++) { 2104cac2994SStefano Zampini ierr = VecCreateMPI(PetscObjectComm((PetscObject)dm),nlocal[f],PETSC_DECIDE,&Ufield[f]);CHKERRQ(ierr); 2114cac2994SStefano Zampini ierr = PetscObjectSetName((PetscObject)Ufield[f],fieldname[f]);CHKERRQ(ierr); 2124cac2994SStefano Zampini ierr = VecSetBlockSize(Ufield[f],bs[f]);CHKERRQ(ierr); 2134cac2994SStefano Zampini ierr = VecSetDM(Ufield[f],dm);CHKERRQ(ierr); 2144cac2994SStefano Zampini } 2154cac2994SStefano Zampini 2168135c375SStefano Zampini /* customize the viewer */ 2174cac2994SStefano Zampini ierr = PetscViewerGLVisSetFields(viewer,ctx->nf,(const char**)fec_type,dims,DMPlexSampleGLVisFields_Private,(PetscObject*)Ufield,ctx,DestroyGLVisViewerCtx_Private);CHKERRQ(ierr); 2188135c375SStefano Zampini for (f=0;f<ctx->nf;f++) { 2198135c375SStefano Zampini ierr = PetscFree(fieldname[f]);CHKERRQ(ierr); 2208135c375SStefano Zampini ierr = PetscFree(fec_type[f]);CHKERRQ(ierr); 2214cac2994SStefano Zampini ierr = VecDestroy(&Ufield[f]);CHKERRQ(ierr); 2228135c375SStefano Zampini } 2234cac2994SStefano Zampini ierr = PetscFree7(fieldname,nlocal,bs,dims,fec_type,idxs,Ufield);CHKERRQ(ierr); 2248135c375SStefano Zampini PetscFunctionReturn(0); 2258135c375SStefano Zampini } 2268135c375SStefano Zampini 2278135c375SStefano Zampini typedef enum {MFEM_POINT=0,MFEM_SEGMENT,MFEM_TRIANGLE,MFEM_SQUARE,MFEM_TETRAHEDRON,MFEM_CUBE,MFEM_UNDEF} MFEM_cid; 2288135c375SStefano Zampini 2298135c375SStefano Zampini MFEM_cid mfem_table_cid[4][7] = { {MFEM_POINT,MFEM_UNDEF,MFEM_UNDEF ,MFEM_UNDEF ,MFEM_UNDEF ,MFEM_UNDEF,MFEM_UNDEF}, 2308135c375SStefano Zampini {MFEM_POINT,MFEM_UNDEF,MFEM_SEGMENT,MFEM_UNDEF ,MFEM_UNDEF ,MFEM_UNDEF,MFEM_UNDEF}, 2318135c375SStefano Zampini {MFEM_POINT,MFEM_UNDEF,MFEM_SEGMENT,MFEM_TRIANGLE,MFEM_SQUARE ,MFEM_UNDEF,MFEM_UNDEF}, 2328135c375SStefano Zampini {MFEM_POINT,MFEM_UNDEF,MFEM_SEGMENT,MFEM_UNDEF ,MFEM_TETRAHEDRON,MFEM_UNDEF,MFEM_CUBE } }; 2338135c375SStefano Zampini 234044a5661SStefano Zampini MFEM_cid mfem_table_cid_unint[4][9] = { {MFEM_POINT,MFEM_UNDEF,MFEM_UNDEF ,MFEM_UNDEF ,MFEM_UNDEF ,MFEM_UNDEF,MFEM_UNDEF,MFEM_UNDEF,MFEM_UNDEF}, 235044a5661SStefano Zampini {MFEM_POINT,MFEM_UNDEF,MFEM_SEGMENT,MFEM_UNDEF ,MFEM_UNDEF ,MFEM_UNDEF,MFEM_UNDEF,MFEM_UNDEF,MFEM_UNDEF}, 236044a5661SStefano Zampini {MFEM_POINT,MFEM_UNDEF,MFEM_SEGMENT,MFEM_TRIANGLE,MFEM_SQUARE ,MFEM_UNDEF,MFEM_UNDEF,MFEM_UNDEF,MFEM_UNDEF}, 237044a5661SStefano Zampini {MFEM_POINT,MFEM_UNDEF,MFEM_SEGMENT,MFEM_UNDEF ,MFEM_TETRAHEDRON,MFEM_UNDEF,MFEM_UNDEF,MFEM_UNDEF,MFEM_CUBE } }; 238044a5661SStefano Zampini 239cc0d3ed7SStefano Zampini static PetscErrorCode DMPlexGetPointMFEMCellID_Internal(DM dm, DMLabel label, PetscInt p, PetscInt *mid, PetscInt *cid) 2408135c375SStefano Zampini { 2418135c375SStefano Zampini DMLabel dlabel; 242044a5661SStefano Zampini PetscInt depth,csize,pdepth,dim; 2438135c375SStefano Zampini PetscErrorCode ierr; 2448135c375SStefano Zampini 2458135c375SStefano Zampini PetscFunctionBegin; 2468135c375SStefano Zampini ierr = DMPlexGetDepthLabel(dm,&dlabel);CHKERRQ(ierr); 247044a5661SStefano Zampini ierr = DMLabelGetValue(dlabel,p,&pdepth);CHKERRQ(ierr); 2488135c375SStefano Zampini ierr = DMPlexGetConeSize(dm,p,&csize);CHKERRQ(ierr); 249044a5661SStefano Zampini ierr = DMPlexGetDepth(dm,&depth);CHKERRQ(ierr); 250044a5661SStefano Zampini ierr = DMGetDimension(dm,&dim);CHKERRQ(ierr); 2518135c375SStefano Zampini if (label) { 2528135c375SStefano Zampini ierr = DMLabelGetValue(label,p,mid);CHKERRQ(ierr); 25377eacf09SStefano Zampini } else *mid = 1; 254044a5661SStefano Zampini if (depth >=0 && dim != depth) { /* not interpolated, it assumes cell-vertex mesh */ 255044a5661SStefano Zampini #if defined PETSC_USE_DEBUG 256044a5661SStefano Zampini if (dim < 0 || dim > 3) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"Dimension %D",dim); 257044a5661SStefano Zampini if (csize > 8) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_SUP,"Found cone size %D for point %D",csize,p); 258044a5661SStefano Zampini if (depth != 1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_SUP,"Found depth %D for point %D. You should interpolate the mesh first",depth,p); 259044a5661SStefano Zampini #endif 260044a5661SStefano Zampini *cid = mfem_table_cid_unint[dim][csize]; 261044a5661SStefano Zampini } else { 262044a5661SStefano Zampini #if defined PETSC_USE_DEBUG 263044a5661SStefano Zampini if (csize > 6) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_SUP,"Cone size %D for point %D",csize,p); 264044a5661SStefano Zampini if (pdepth < 0 || pdepth > 3) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_SUP,"Depth %D for point %D",csize,p); 265044a5661SStefano Zampini #endif 266044a5661SStefano Zampini *cid = mfem_table_cid[pdepth][csize]; 267044a5661SStefano Zampini } 2688135c375SStefano Zampini PetscFunctionReturn(0); 2698135c375SStefano Zampini } 2708135c375SStefano Zampini 271cc0d3ed7SStefano Zampini static PetscErrorCode DMPlexGetPointMFEMVertexIDs_Internal(DM dm, PetscInt p, PetscSection csec, PetscInt *nv, int vids[]) 2728135c375SStefano Zampini { 273cc0d3ed7SStefano Zampini PetscInt dim,sdim,dof = 0,off = 0,i,q,vStart,vEnd,numPoints,*points = NULL; 2748135c375SStefano Zampini PetscErrorCode ierr; 2758135c375SStefano Zampini 2768135c375SStefano Zampini PetscFunctionBegin; 2778135c375SStefano Zampini ierr = DMPlexGetDepthStratum(dm,0,&vStart,&vEnd);CHKERRQ(ierr); 278cc0d3ed7SStefano Zampini ierr = DMGetDimension(dm,&dim);CHKERRQ(ierr); 279cc0d3ed7SStefano Zampini sdim = dim; 280cc0d3ed7SStefano Zampini if (csec) { 28184f354e3SLisandro Dalcin PetscInt sStart,sEnd; 28284f354e3SLisandro Dalcin 283cc0d3ed7SStefano Zampini ierr = DMGetCoordinateDim(dm,&sdim);CHKERRQ(ierr); 28484f354e3SLisandro Dalcin ierr = PetscSectionGetChart(csec,&sStart,&sEnd);CHKERRQ(ierr); 285cc0d3ed7SStefano Zampini ierr = PetscSectionGetOffset(csec,vStart,&off);CHKERRQ(ierr); 286cc0d3ed7SStefano Zampini off = off/sdim; 28784f354e3SLisandro Dalcin if (p >= sStart && p < sEnd) { 288cc0d3ed7SStefano Zampini ierr = PetscSectionGetDof(csec,p,&dof);CHKERRQ(ierr); 289cc0d3ed7SStefano Zampini } 29084f354e3SLisandro Dalcin } 291cc0d3ed7SStefano Zampini if (!dof) { 2928135c375SStefano Zampini ierr = DMPlexGetTransitiveClosure(dm,p,PETSC_TRUE,&numPoints,&points);CHKERRQ(ierr); 2938135c375SStefano Zampini for (i=0,q=0;i<numPoints*2;i+= 2) 2948135c375SStefano Zampini if ((points[i] >= vStart) && (points[i] < vEnd)) 2958183e3f6SStefano Zampini vids[q++] = (int)(points[i]-vStart+off); 2968135c375SStefano Zampini ierr = DMPlexRestoreTransitiveClosure(dm,p,PETSC_TRUE,&numPoints,&points);CHKERRQ(ierr); 297cc0d3ed7SStefano Zampini } else { 298cc0d3ed7SStefano Zampini ierr = PetscSectionGetOffset(csec,p,&off);CHKERRQ(ierr); 299cc0d3ed7SStefano Zampini ierr = PetscSectionGetDof(csec,p,&dof);CHKERRQ(ierr); 3008183e3f6SStefano Zampini for (q=0;q<dof/sdim;q++) vids[q] = (int)(off/sdim + q); 301cc0d3ed7SStefano Zampini } 3028135c375SStefano Zampini *nv = q; 3038135c375SStefano Zampini PetscFunctionReturn(0); 3048135c375SStefano Zampini } 3058135c375SStefano Zampini 30677eacf09SStefano Zampini /* 30777eacf09SStefano Zampini ASCII visualization/dump: full support for simplices and tensor product cells. It supports AMR 30877eacf09SStefano Zampini Higher order meshes are also supported 30977eacf09SStefano Zampini */ 3108135c375SStefano Zampini static PetscErrorCode DMPlexView_GLVis_ASCII(DM dm, PetscViewer viewer) 3118135c375SStefano Zampini { 3128135c375SStefano Zampini DMLabel label; 3138135c375SStefano Zampini PetscSection coordSection,parentSection; 31477eacf09SStefano Zampini Vec coordinates,hovec; 3158135c375SStefano Zampini const PetscScalar *array; 3168135c375SStefano Zampini PetscInt bf,p,sdim,dim,depth,novl; 317cc0d3ed7SStefano Zampini PetscInt cStart,cEnd,cEndInterior,vStart,vEnd,nvert; 3183924b612SStefano Zampini PetscMPIInt size; 3193e6c54aaSStefano Zampini PetscBool localized,isascii; 3203e6c54aaSStefano Zampini PetscBool enable_mfem,enable_boundary,enable_ncmesh; 3213e6c54aaSStefano Zampini PetscBT pown,vown; 3228135c375SStefano Zampini PetscErrorCode ierr; 3238135c375SStefano Zampini PetscContainer glvis_container; 324044a5661SStefano Zampini PetscBool cellvertex = PETSC_FALSE, periodic, enabled = PETSC_TRUE; 32577eacf09SStefano Zampini const char *fmt; 3267bf4dd16SStefano Zampini char emark[64] = "",bmark[64] = ""; 3278135c375SStefano Zampini 3288135c375SStefano Zampini PetscFunctionBegin; 3298135c375SStefano Zampini PetscValidHeaderSpecific(dm,DM_CLASSID,1); 3308135c375SStefano Zampini PetscValidHeaderSpecific(viewer,PETSC_VIEWER_CLASSID,2); 3318135c375SStefano Zampini ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&isascii);CHKERRQ(ierr); 3328135c375SStefano Zampini if (!isascii) SETERRQ(PetscObjectComm((PetscObject)viewer),PETSC_ERR_SUP,"Viewer must be of type VIEWERASCII"); 3333924b612SStefano Zampini ierr = MPI_Comm_size(PetscObjectComm((PetscObject)viewer),&size);CHKERRQ(ierr); 3343924b612SStefano Zampini if (size > 1) SETERRQ(PetscObjectComm((PetscObject)viewer),PETSC_ERR_SUP,"Use single sequential viewers for parallel visualization"); 3358135c375SStefano Zampini ierr = DMGetDimension(dm,&dim);CHKERRQ(ierr); 3368135c375SStefano Zampini 3378135c375SStefano Zampini /* get container: determines if a process visualizes is portion of the data or not */ 3388135c375SStefano Zampini ierr = PetscObjectQuery((PetscObject)viewer,"_glvis_info_container",(PetscObject*)&glvis_container);CHKERRQ(ierr); 3398135c375SStefano Zampini if (!glvis_container) SETERRQ(PetscObjectComm((PetscObject)dm),PETSC_ERR_PLIB,"Missing GLVis container"); 3408135c375SStefano Zampini { 3418135c375SStefano Zampini PetscViewerGLVisInfo glvis_info; 3428135c375SStefano Zampini ierr = PetscContainerGetPointer(glvis_container,(void**)&glvis_info);CHKERRQ(ierr); 3438135c375SStefano Zampini enabled = glvis_info->enabled; 34477eacf09SStefano Zampini fmt = glvis_info->fmt; 3458135c375SStefano Zampini } 346cc0d3ed7SStefano Zampini ierr = DMPlexGetHybridBounds(dm, &cEndInterior, NULL, NULL, NULL);CHKERRQ(ierr); 3478135c375SStefano Zampini ierr = DMPlexGetHeightStratum(dm,0,&cStart,&cEnd);CHKERRQ(ierr); 3488135c375SStefano Zampini cEnd = cEndInterior < 0 ? cEnd : cEndInterior; 3498135c375SStefano Zampini ierr = DMPlexGetDepthStratum(dm,0,&vStart,&vEnd);CHKERRQ(ierr); 35077eacf09SStefano Zampini ierr = DMGetPeriodicity(dm,&periodic,NULL,NULL,NULL);CHKERRQ(ierr); 351cc0d3ed7SStefano Zampini ierr = DMGetCoordinatesLocalized(dm,&localized);CHKERRQ(ierr); 35277eacf09SStefano Zampini if (periodic && !localized) SETERRQ(PetscObjectComm((PetscObject)dm),PETSC_ERR_SUP,"Coordinates need to be localized"); 353cc0d3ed7SStefano Zampini ierr = DMGetCoordinateSection(dm,&coordSection);CHKERRQ(ierr); 35477eacf09SStefano Zampini ierr = DMGetCoordinateDim(dm,&sdim);CHKERRQ(ierr); 35577eacf09SStefano Zampini ierr = DMGetCoordinatesLocal(dm,&coordinates);CHKERRQ(ierr); 35643eeeb2dSStefano Zampini if (!coordinates) SETERRQ(PetscObjectComm((PetscObject)dm),PETSC_ERR_SUP,"Missing local coordinates vector"); 35777eacf09SStefano Zampini 35877eacf09SStefano Zampini /* Users can attach a coordinate vector to the DM in case they have a higher-order mesh 35977eacf09SStefano Zampini DMPlex does not currently support HO meshes, so there's no API for this */ 36077eacf09SStefano Zampini ierr = PetscObjectQuery((PetscObject)dm,"_glvis_mesh_coords",(PetscObject*)&hovec);CHKERRQ(ierr); 3618135c375SStefano Zampini 3628135c375SStefano Zampini /* 3638135c375SStefano Zampini a couple of sections of the mesh specification are disabled 36477eacf09SStefano Zampini - boundary: unless we want to visualize boundary attributes or we have a periodic mesh 36577eacf09SStefano Zampini the boundary is not needed for proper mesh visualization 36677eacf09SStefano Zampini - vertex_parents: used for non-conforming meshes only when we want to use MFEM as a discretization package 3673e6c54aaSStefano Zampini and be able to derefine the mesh (MFEM does not currently have to ability to read ncmeshes in parallel) 3688135c375SStefano Zampini */ 369e74666bcSStefano Zampini enable_boundary = periodic; 3708135c375SStefano Zampini enable_ncmesh = PETSC_FALSE; 3713e6c54aaSStefano Zampini enable_mfem = PETSC_FALSE; 3727bf4dd16SStefano Zampini /* I'm tired of problems with negative values in the markers, disable them */ 3738135c375SStefano Zampini ierr = PetscOptionsBegin(PetscObjectComm((PetscObject)dm),((PetscObject)dm)->prefix,"GLVis PetscViewer DMPlex Options","PetscViewer");CHKERRQ(ierr); 3743e6c54aaSStefano Zampini ierr = PetscOptionsBool("-viewer_glvis_dm_plex_enable_boundary","Enable boundary section in mesh representation",NULL,enable_boundary,&enable_boundary,NULL);CHKERRQ(ierr); 3753e6c54aaSStefano Zampini ierr = PetscOptionsBool("-viewer_glvis_dm_plex_enable_ncmesh","Enable vertex_parents section in mesh representation (allows derefinement)",NULL,enable_ncmesh,&enable_ncmesh,NULL);CHKERRQ(ierr); 3763e6c54aaSStefano Zampini ierr = PetscOptionsBool("-viewer_glvis_dm_plex_enable_mfem","Dump a mesh that can be used with MFEM's FiniteElementSpaces",NULL,enable_mfem,&enable_mfem,NULL);CHKERRQ(ierr); 3777bf4dd16SStefano Zampini ierr = PetscOptionsString("-viewer_glvis_dm_plex_emarker","String for the material id label",NULL,emark,emark,sizeof(emark),NULL);CHKERRQ(ierr); 3787bf4dd16SStefano Zampini ierr = PetscOptionsString("-viewer_glvis_dm_plex_bmarker","String for the boundary id label",NULL,bmark,bmark,sizeof(bmark),NULL);CHKERRQ(ierr); 3798135c375SStefano Zampini ierr = PetscOptionsEnd();CHKERRQ(ierr); 3803924b612SStefano Zampini ierr = MPI_Comm_size(PetscObjectComm((PetscObject)dm),&size);CHKERRQ(ierr); 3813924b612SStefano Zampini if (enable_ncmesh && size > 1) SETERRQ(PetscObjectComm((PetscObject)dm),PETSC_ERR_SUP,"Not supported in parallel"); 3827e1aca4eSStefano Zampini ierr = DMPlexGetDepth(dm,&depth);CHKERRQ(ierr); 3837e1aca4eSStefano Zampini if (enable_boundary && depth >= 0 && dim != depth) SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Mesh must be interpolated. " 3847e1aca4eSStefano Zampini "Alternatively, run with -viewer_glvis_dm_plex_enable_boundary 0"); 3857e1aca4eSStefano Zampini if (enable_ncmesh && depth >= 0 && dim != depth) SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Mesh must be interpolated. " 3867e1aca4eSStefano Zampini "Alternatively, run with -viewer_glvis_dm_plex_enable_ncmesh 0"); 387044a5661SStefano Zampini if (depth >=0 && dim != depth) { /* not interpolated, it assumes cell-vertex mesh */ 388044a5661SStefano Zampini if (depth != 1) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"Unsupported depth %D. You should interpolate the mesh first",depth); 389044a5661SStefano Zampini cellvertex = PETSC_TRUE; 390044a5661SStefano Zampini } 3918135c375SStefano Zampini 3928135c375SStefano Zampini /* Identify possible cells in the overlap */ 3938135c375SStefano Zampini novl = 0; 3948135c375SStefano Zampini pown = NULL; 3953924b612SStefano Zampini if (size > 1) { 3963e6c54aaSStefano Zampini IS globalNum = NULL; 3973e6c54aaSStefano Zampini const PetscInt *gNum; 3983e6c54aaSStefano Zampini PetscBool ovl = PETSC_FALSE; 3993e6c54aaSStefano Zampini 4008135c375SStefano Zampini ierr = DMPlexGetCellNumbering(dm,&globalNum);CHKERRQ(ierr); 4018135c375SStefano Zampini ierr = ISGetIndices(globalNum,&gNum);CHKERRQ(ierr); 4028135c375SStefano Zampini for (p=cStart; p<cEnd; p++) { 4038135c375SStefano Zampini if (gNum[p-cStart] < 0) { 4048135c375SStefano Zampini ovl = PETSC_TRUE; 4058135c375SStefano Zampini novl++; 4068135c375SStefano Zampini } 4078135c375SStefano Zampini } 4088135c375SStefano Zampini if (ovl) { 4098135c375SStefano Zampini /* it may happen that pown get not destroyed, if the user closes the window while this function is running. 4108135c375SStefano Zampini TODO: garbage collector? attach pown to dm? */ 4113e6c54aaSStefano Zampini ierr = PetscBTCreate(cEnd-cStart,&pown);CHKERRQ(ierr); 4123e6c54aaSStefano Zampini for (p=cStart; p<cEnd; p++) { 4133e6c54aaSStefano Zampini if (gNum[p-cStart] < 0) continue; 4143e6c54aaSStefano Zampini else { 4153e6c54aaSStefano Zampini ierr = PetscBTSet(pown,p-cStart);CHKERRQ(ierr); 4168135c375SStefano Zampini } 4178135c375SStefano Zampini } 4183e6c54aaSStefano Zampini } 4193e6c54aaSStefano Zampini ierr = ISRestoreIndices(globalNum,&gNum);CHKERRQ(ierr); 4203e6c54aaSStefano Zampini } 4218135c375SStefano Zampini 4223e6c54aaSStefano Zampini /* return if this process is disabled */ 4238135c375SStefano Zampini if (!enabled) { 4248135c375SStefano Zampini ierr = PetscViewerASCIIPrintf(viewer,"MFEM mesh v1.1\n");CHKERRQ(ierr); 4258135c375SStefano Zampini ierr = PetscViewerASCIIPrintf(viewer,"\ndimension\n");CHKERRQ(ierr); 4268135c375SStefano Zampini ierr = PetscViewerASCIIPrintf(viewer,"%D\n",dim);CHKERRQ(ierr); 4278135c375SStefano Zampini ierr = PetscViewerASCIIPrintf(viewer,"\nelements\n");CHKERRQ(ierr); 4288135c375SStefano Zampini ierr = PetscViewerASCIIPrintf(viewer,"%D\n",0);CHKERRQ(ierr); 4298135c375SStefano Zampini ierr = PetscViewerASCIIPrintf(viewer,"\nboundary\n");CHKERRQ(ierr); 4308135c375SStefano Zampini ierr = PetscViewerASCIIPrintf(viewer,"%D\n",0);CHKERRQ(ierr); 4318135c375SStefano Zampini ierr = PetscViewerASCIIPrintf(viewer,"\nvertices\n");CHKERRQ(ierr); 4328135c375SStefano Zampini ierr = PetscViewerASCIIPrintf(viewer,"%D\n",0);CHKERRQ(ierr); 4338135c375SStefano Zampini ierr = PetscViewerASCIIPrintf(viewer,"%D\n",sdim);CHKERRQ(ierr); 4348135c375SStefano Zampini ierr = PetscBTDestroy(&pown);CHKERRQ(ierr); 4358135c375SStefano Zampini PetscFunctionReturn(0); 4368135c375SStefano Zampini } 4378135c375SStefano Zampini 4383e6c54aaSStefano Zampini if (enable_mfem) { 4393e6c54aaSStefano Zampini if (periodic && !hovec) { /* we need to generate a vector of L2 coordinates, as this is how MFEM handles periodic meshes */ 4403e6c54aaSStefano Zampini PetscInt vpc = 0; 4413e6c54aaSStefano Zampini char fec[64]; 4423e6c54aaSStefano Zampini int vids[8] = {0,1,2,3,4,5,6,7}; 443044a5661SStefano Zampini int hexv[8] = {0,1,3,2,4,5,7,6}, tetv[4] = {0,1,2,3}; 444044a5661SStefano Zampini int quadv[8] = {0,1,3,2}, triv[3] = {0,1,2}; 445044a5661SStefano Zampini int *dof = NULL; 4463e6c54aaSStefano Zampini PetscScalar *array,*ptr; 4473e6c54aaSStefano Zampini 448bfadf1d8SStefano Zampini ierr = PetscSNPrintf(fec,sizeof(fec),"FiniteElementCollection: L2_T1_%DD_P1",dim);CHKERRQ(ierr); 4493e6c54aaSStefano Zampini if (cEnd-cStart) { 4503e6c54aaSStefano Zampini PetscInt fpc; 4513e6c54aaSStefano Zampini 4523e6c54aaSStefano Zampini ierr = DMPlexGetConeSize(dm,cStart,&fpc);CHKERRQ(ierr); 4533e6c54aaSStefano Zampini switch(dim) { 4543e6c54aaSStefano Zampini case 1: 4553e6c54aaSStefano Zampini vpc = 2; 4563e6c54aaSStefano Zampini dof = hexv; 4573e6c54aaSStefano Zampini break; 4583e6c54aaSStefano Zampini case 2: 4593e6c54aaSStefano Zampini switch (fpc) { 4603e6c54aaSStefano Zampini case 3: 4613e6c54aaSStefano Zampini vpc = 3; 462044a5661SStefano Zampini dof = triv; 4633e6c54aaSStefano Zampini break; 4643e6c54aaSStefano Zampini case 4: 4653e6c54aaSStefano Zampini vpc = 4; 466044a5661SStefano Zampini dof = quadv; 4673e6c54aaSStefano Zampini break; 4683e6c54aaSStefano Zampini default: 4693e6c54aaSStefano Zampini SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"Unhandled case: faces per cell %D",fpc); 4703e6c54aaSStefano Zampini break; 4713e6c54aaSStefano Zampini } 4723e6c54aaSStefano Zampini break; 4733e6c54aaSStefano Zampini case 3: 4743e6c54aaSStefano Zampini switch (fpc) { 475044a5661SStefano Zampini case 4: /* TODO: still need to understand L2 ordering for tets */ 4763e6c54aaSStefano Zampini vpc = 4; 477044a5661SStefano Zampini dof = tetv; 478044a5661SStefano Zampini SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Unhandled tethraedral case"); 4793e6c54aaSStefano Zampini break; 4803e6c54aaSStefano Zampini case 6: 481044a5661SStefano Zampini if (cellvertex) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"Unhandled case: vertices per cell %D",fpc); 482044a5661SStefano Zampini vpc = 8; 483044a5661SStefano Zampini dof = hexv; 484044a5661SStefano Zampini break; 485044a5661SStefano Zampini case 8: 486044a5661SStefano Zampini if (!cellvertex) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"Unhandled case: faces per cell %D",fpc); 4873e6c54aaSStefano Zampini vpc = 8; 4883e6c54aaSStefano Zampini dof = hexv; 4893e6c54aaSStefano Zampini break; 4903e6c54aaSStefano Zampini default: 4913e6c54aaSStefano Zampini SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"Unhandled case: faces per cell %D",fpc); 4923e6c54aaSStefano Zampini break; 4933e6c54aaSStefano Zampini } 4943e6c54aaSStefano Zampini break; 4953e6c54aaSStefano Zampini default: 4963e6c54aaSStefano Zampini SETERRQ(PetscObjectComm((PetscObject)dm),PETSC_ERR_SUP,"Unhandled dim"); 4973e6c54aaSStefano Zampini break; 4983e6c54aaSStefano Zampini } 4993e6c54aaSStefano Zampini ierr = DMPlexInvertCell(dim,vpc,vids);CHKERRQ(ierr); 5003e6c54aaSStefano Zampini } 501044a5661SStefano Zampini if (!dof) SETERRQ(PetscObjectComm((PetscObject)dm),PETSC_ERR_PLIB,"Missing dofs"); 5023e6c54aaSStefano Zampini ierr = VecCreateSeq(PETSC_COMM_SELF,(cEnd-cStart-novl)*vpc*sdim,&hovec);CHKERRQ(ierr); 5033e6c54aaSStefano Zampini ierr = PetscObjectCompose((PetscObject)dm,"_glvis_mesh_coords",(PetscObject)hovec);CHKERRQ(ierr); 5043e6c54aaSStefano Zampini ierr = PetscObjectDereference((PetscObject)hovec);CHKERRQ(ierr); 5053e6c54aaSStefano Zampini ierr = PetscObjectSetName((PetscObject)hovec,fec);CHKERRQ(ierr); 5063e6c54aaSStefano Zampini ierr = VecGetArray(hovec,&array);CHKERRQ(ierr); 5073e6c54aaSStefano Zampini ptr = array; 5083e6c54aaSStefano Zampini for (p=cStart;p<cEnd;p++) { 5093e6c54aaSStefano Zampini PetscInt csize,v,d; 5103e6c54aaSStefano Zampini PetscScalar *vals = NULL; 5113e6c54aaSStefano Zampini 5123e6c54aaSStefano Zampini if (PetscUnlikely(pown && !PetscBTLookup(pown,p-cStart))) continue; 5133e6c54aaSStefano Zampini ierr = DMPlexVecGetClosure(dm,coordSection,coordinates,p,&csize,&vals);CHKERRQ(ierr); 5143e6c54aaSStefano Zampini if (csize != vpc*sdim && csize != vpc*sdim*2) SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_SUP,"Unsupported closure size %D (vpc %D, sdim %D)",csize,vpc,sdim); 5153e6c54aaSStefano Zampini for (v=0;v<vpc;v++) { 5163e6c54aaSStefano Zampini for (d=0;d<sdim;d++) { 5173e6c54aaSStefano Zampini ptr[sdim*dof[v]+d] = vals[sdim*vids[v]+d]; 5183e6c54aaSStefano Zampini } 5193e6c54aaSStefano Zampini } 5203e6c54aaSStefano Zampini ptr += vpc*sdim; 5213e6c54aaSStefano Zampini ierr = DMPlexVecRestoreClosure(dm,coordSection,coordinates,p,&csize,&vals);CHKERRQ(ierr); 5223e6c54aaSStefano Zampini } 5233e6c54aaSStefano Zampini ierr = VecRestoreArray(hovec,&array);CHKERRQ(ierr); 5243e6c54aaSStefano Zampini } 5253e6c54aaSStefano Zampini } 5263e6c54aaSStefano Zampini 5273e6c54aaSStefano Zampini 5288135c375SStefano Zampini /* header */ 5298135c375SStefano Zampini ierr = PetscViewerASCIIPrintf(viewer,"MFEM mesh v1.1\n");CHKERRQ(ierr); 5308135c375SStefano Zampini 5318135c375SStefano Zampini /* topological dimension */ 5328135c375SStefano Zampini ierr = PetscViewerASCIIPrintf(viewer,"\ndimension\n");CHKERRQ(ierr); 5338135c375SStefano Zampini ierr = PetscViewerASCIIPrintf(viewer,"%D\n",dim);CHKERRQ(ierr); 5348135c375SStefano Zampini 5358135c375SStefano Zampini /* elements */ 5367bf4dd16SStefano Zampini ierr = DMGetLabel(dm,emark,&label);CHKERRQ(ierr); 5378135c375SStefano Zampini ierr = PetscViewerASCIIPrintf(viewer,"\nelements\n");CHKERRQ(ierr); 5388135c375SStefano Zampini ierr = PetscViewerASCIIPrintf(viewer,"%D\n",cEnd-cStart-novl);CHKERRQ(ierr); 5398135c375SStefano Zampini for (p=cStart;p<cEnd;p++) { 54011a4995dSStefano Zampini int vids[8]; 54111a4995dSStefano Zampini PetscInt i,nv = 0,cid = -1,mid = 1; 5428135c375SStefano Zampini 5433e6c54aaSStefano Zampini if (PetscUnlikely(pown && !PetscBTLookup(pown,p-cStart))) continue; 5448135c375SStefano Zampini ierr = DMPlexGetPointMFEMCellID_Internal(dm,label,p,&mid,&cid);CHKERRQ(ierr); 54577eacf09SStefano Zampini ierr = DMPlexGetPointMFEMVertexIDs_Internal(dm,p,(localized && !hovec) ? coordSection : NULL,&nv,vids);CHKERRQ(ierr); 54677eacf09SStefano Zampini ierr = DMPlexInvertCell(dim,nv,vids);CHKERRQ(ierr); 5478135c375SStefano Zampini ierr = PetscViewerASCIIPrintf(viewer,"%D %D",mid,cid);CHKERRQ(ierr); 5488135c375SStefano Zampini for (i=0;i<nv;i++) { 549bfadf1d8SStefano Zampini ierr = PetscViewerASCIIPrintf(viewer," %D",(PetscInt)vids[i]);CHKERRQ(ierr); 5508135c375SStefano Zampini } 5518135c375SStefano Zampini ierr = PetscViewerASCIIPrintf(viewer,"\n");CHKERRQ(ierr); 5528135c375SStefano Zampini } 5538135c375SStefano Zampini 554cc0d3ed7SStefano Zampini /* boundary */ 555cc0d3ed7SStefano Zampini ierr = PetscViewerASCIIPrintf(viewer,"\nboundary\n");CHKERRQ(ierr); 556cc0d3ed7SStefano Zampini if (!enable_boundary) { 557cc0d3ed7SStefano Zampini ierr = PetscViewerASCIIPrintf(viewer,"%D\n",0);CHKERRQ(ierr); 558cc0d3ed7SStefano Zampini } else { 55977eacf09SStefano Zampini DMLabel perLabel; 56077eacf09SStefano Zampini PetscBT bfaces; 56177eacf09SStefano Zampini PetscInt fStart,fEnd,fEndInterior,*fcells; 56277eacf09SStefano Zampini PetscInt *faces = NULL,fpc = 0,vpf = 0, vpc = 0; 563cc0d3ed7SStefano Zampini PetscInt fv1[] = {0,1}, 564cc0d3ed7SStefano Zampini fv2tri[] = {0,1, 565cc0d3ed7SStefano Zampini 1,2, 566cc0d3ed7SStefano Zampini 2,0}, 567cc0d3ed7SStefano Zampini fv2quad[] = {0,1, 568cc0d3ed7SStefano Zampini 1,2, 569cc0d3ed7SStefano Zampini 2,3, 570cc0d3ed7SStefano Zampini 3,0}, 571cc0d3ed7SStefano Zampini fv3tet[] = {0,1,2, 572cc0d3ed7SStefano Zampini 0,3,1, 573cc0d3ed7SStefano Zampini 0,2,3, 574cc0d3ed7SStefano Zampini 2,1,3}, 575cc0d3ed7SStefano Zampini fv3hex[] = {0,1,2,3, 576cc0d3ed7SStefano Zampini 4,5,6,7, 577cc0d3ed7SStefano Zampini 0,3,5,4, 578cc0d3ed7SStefano Zampini 2,1,7,6, 579cc0d3ed7SStefano Zampini 3,2,6,5, 580cc0d3ed7SStefano Zampini 0,4,7,1}; 581cc0d3ed7SStefano Zampini 5828135c375SStefano Zampini /* determine orientation of boundary mesh */ 5838135c375SStefano Zampini if (cEnd-cStart) { 5848135c375SStefano Zampini ierr = DMPlexGetConeSize(dm,cStart,&fpc);CHKERRQ(ierr); 5858135c375SStefano Zampini switch(dim) { 5868135c375SStefano Zampini case 1: 5878135c375SStefano Zampini if (fpc != 2) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"Unhandled case faces per cell %D",fpc); 5888135c375SStefano Zampini faces = fv1; 5898135c375SStefano Zampini vpf = 1; 59077eacf09SStefano Zampini vpc = 2; 5918135c375SStefano Zampini break; 5928135c375SStefano Zampini case 2: 5938135c375SStefano Zampini switch (fpc) { 5948135c375SStefano Zampini case 3: 5958135c375SStefano Zampini faces = fv2tri; 5968135c375SStefano Zampini vpf = 2; 59777eacf09SStefano Zampini vpc = 3; 5988135c375SStefano Zampini break; 5998135c375SStefano Zampini case 4: 6008135c375SStefano Zampini faces = fv2quad; 6018135c375SStefano Zampini vpf = 2; 60277eacf09SStefano Zampini vpc = 4; 6038135c375SStefano Zampini break; 6048135c375SStefano Zampini default: 6058135c375SStefano Zampini SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"Unhandled case: faces per cell %D",fpc); 6068135c375SStefano Zampini break; 6078135c375SStefano Zampini } 6088135c375SStefano Zampini break; 6098135c375SStefano Zampini case 3: 6108135c375SStefano Zampini switch (fpc) { 6118135c375SStefano Zampini case 4: 6128135c375SStefano Zampini faces = fv3tet; 6138135c375SStefano Zampini vpf = 3; 61477eacf09SStefano Zampini vpc = 4; 6158135c375SStefano Zampini break; 6168135c375SStefano Zampini case 6: 6178135c375SStefano Zampini faces = fv3hex; 6188135c375SStefano Zampini vpf = 4; 61977eacf09SStefano Zampini vpc = 8; 6208135c375SStefano Zampini break; 6218135c375SStefano Zampini default: 6228135c375SStefano Zampini SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"Unhandled case: faces per cell %D",fpc); 6238135c375SStefano Zampini break; 6248135c375SStefano Zampini } 6258135c375SStefano Zampini break; 6268135c375SStefano Zampini default: 6278135c375SStefano Zampini SETERRQ(PetscObjectComm((PetscObject)dm),PETSC_ERR_SUP,"Unhandled dim"); 6288135c375SStefano Zampini break; 6298135c375SStefano Zampini } 6308135c375SStefano Zampini } 631cc0d3ed7SStefano Zampini ierr = DMPlexGetHybridBounds(dm,NULL,&fEndInterior,NULL,NULL);CHKERRQ(ierr); 6328135c375SStefano Zampini ierr = DMPlexGetHeightStratum(dm,1,&fStart,&fEnd);CHKERRQ(ierr); 6338135c375SStefano Zampini fEnd = fEndInterior < 0 ? fEnd : fEndInterior; 63477eacf09SStefano Zampini ierr = PetscBTCreate(fEnd-fStart,&bfaces);CHKERRQ(ierr); 63577eacf09SStefano Zampini ierr = DMPlexGetMaxSizes(dm,NULL,&p);CHKERRQ(ierr); 63677eacf09SStefano Zampini ierr = PetscMalloc1(p,&fcells);CHKERRQ(ierr); 63777eacf09SStefano Zampini ierr = DMGetLabel(dm,"glvis_periodic_cut",&perLabel);CHKERRQ(ierr); 63877eacf09SStefano Zampini if (!perLabel && localized) { /* this periodic cut can be moved up to DMPlex setup */ 63977eacf09SStefano Zampini ierr = DMCreateLabel(dm,"glvis_periodic_cut");CHKERRQ(ierr); 64077eacf09SStefano Zampini ierr = DMGetLabel(dm,"glvis_periodic_cut",&perLabel);CHKERRQ(ierr); 64177eacf09SStefano Zampini ierr = DMLabelSetDefaultValue(perLabel,1);CHKERRQ(ierr); 64277eacf09SStefano Zampini for (p=cStart;p<cEnd;p++) { 64377eacf09SStefano Zampini PetscInt dof; 64477eacf09SStefano Zampini ierr = PetscSectionGetDof(coordSection,p,&dof);CHKERRQ(ierr); 64577eacf09SStefano Zampini if (dof) { 64677eacf09SStefano Zampini PetscInt v,csize,cellClosureSize,*cellClosure = NULL,*vidxs = NULL; 64777eacf09SStefano Zampini PetscScalar *vals = NULL; 64877eacf09SStefano Zampini 64977eacf09SStefano Zampini if (dof%sdim) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_USER,"Incompatible number of cell dofs %D and space dimension %D",dof,sdim); 6507bf4dd16SStefano Zampini if (dof/sdim != vpc) SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_SUP,"Incompatible number of cell dofs %D, vertices %D and space dim %D",dof/sdim,vpc,sdim); 65177eacf09SStefano Zampini ierr = DMPlexVecGetClosure(dm,coordSection,coordinates,p,&csize,&vals);CHKERRQ(ierr); 65277eacf09SStefano Zampini ierr = DMPlexGetTransitiveClosure(dm,p,PETSC_TRUE,&cellClosureSize,&cellClosure);CHKERRQ(ierr); 65377eacf09SStefano Zampini for (v=0;v<cellClosureSize;v++) 65477eacf09SStefano Zampini if (cellClosure[2*v] >= vStart && cellClosure[2*v] < vEnd) { 65577eacf09SStefano Zampini vidxs = cellClosure + 2*v; 65677eacf09SStefano Zampini break; 65777eacf09SStefano Zampini } 65877eacf09SStefano Zampini if (!vidxs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Missing vertices"); 65977eacf09SStefano Zampini for (v=0;v<vpc;v++) { 66077eacf09SStefano Zampini PetscInt s; 661044a5661SStefano Zampini 66277eacf09SStefano Zampini for (s=0;s<sdim;s++) { 66377eacf09SStefano Zampini if (PetscAbsScalar(vals[v*sdim+s]-vals[v*sdim+s+vpc*sdim])>PETSC_MACHINE_EPSILON) { 66477eacf09SStefano Zampini ierr = DMLabelSetValue(perLabel,vidxs[2*v],2);CHKERRQ(ierr); 66577eacf09SStefano Zampini } 66677eacf09SStefano Zampini } 66777eacf09SStefano Zampini } 66877eacf09SStefano Zampini ierr = DMPlexRestoreTransitiveClosure(dm,p,PETSC_TRUE,&cellClosureSize,&cellClosure);CHKERRQ(ierr); 66977eacf09SStefano Zampini ierr = DMPlexVecRestoreClosure(dm,coordSection,coordinates,p,&csize,&vals);CHKERRQ(ierr); 67077eacf09SStefano Zampini } 67177eacf09SStefano Zampini } 67277eacf09SStefano Zampini if (dim > 1) { 67377eacf09SStefano Zampini PetscInt eEnd,eStart,eEndInterior; 674044a5661SStefano Zampini 67577eacf09SStefano Zampini ierr = DMPlexGetHybridBounds(dm,NULL,NULL,&eEndInterior,NULL);CHKERRQ(ierr); 67677eacf09SStefano Zampini ierr = DMPlexGetDepthStratum(dm,1,&eStart,&eEnd);CHKERRQ(ierr); 67777eacf09SStefano Zampini eEnd = eEndInterior < 0 ? eEnd : eEndInterior; 67877eacf09SStefano Zampini for (p=eStart;p<eEnd;p++) { 67977eacf09SStefano Zampini const PetscInt *cone; 68077eacf09SStefano Zampini PetscInt coneSize,i; 68177eacf09SStefano Zampini PetscBool ispe = PETSC_TRUE; 68277eacf09SStefano Zampini 68377eacf09SStefano Zampini ierr = DMPlexGetCone(dm,p,&cone);CHKERRQ(ierr); 68477eacf09SStefano Zampini ierr = DMPlexGetConeSize(dm,p,&coneSize);CHKERRQ(ierr); 68577eacf09SStefano Zampini for (i=0;i<coneSize;i++) { 68677eacf09SStefano Zampini PetscInt v; 68777eacf09SStefano Zampini 68877eacf09SStefano Zampini ierr = DMLabelGetValue(perLabel,cone[i],&v);CHKERRQ(ierr); 68977eacf09SStefano Zampini ispe = (PetscBool)(ispe && (v==2)); 69077eacf09SStefano Zampini } 69177eacf09SStefano Zampini if (ispe && coneSize) { 69277eacf09SStefano Zampini ierr = DMLabelSetValue(perLabel,p,2);CHKERRQ(ierr); 69377eacf09SStefano Zampini } 69477eacf09SStefano Zampini } 69577eacf09SStefano Zampini if (dim > 2) { 69677eacf09SStefano Zampini for (p=fStart;p<fEnd;p++) { 69777eacf09SStefano Zampini const PetscInt *cone; 69877eacf09SStefano Zampini PetscInt coneSize,i; 69977eacf09SStefano Zampini PetscBool ispe = PETSC_TRUE; 70077eacf09SStefano Zampini 70177eacf09SStefano Zampini ierr = DMPlexGetCone(dm,p,&cone);CHKERRQ(ierr); 70277eacf09SStefano Zampini ierr = DMPlexGetConeSize(dm,p,&coneSize);CHKERRQ(ierr); 70377eacf09SStefano Zampini for (i=0;i<coneSize;i++) { 70477eacf09SStefano Zampini PetscInt v; 70577eacf09SStefano Zampini 70677eacf09SStefano Zampini ierr = DMLabelGetValue(perLabel,cone[i],&v);CHKERRQ(ierr); 70777eacf09SStefano Zampini ispe = (PetscBool)(ispe && (v==2)); 70877eacf09SStefano Zampini } 70977eacf09SStefano Zampini if (ispe && coneSize) { 71077eacf09SStefano Zampini ierr = DMLabelSetValue(perLabel,p,2);CHKERRQ(ierr); 71177eacf09SStefano Zampini } 71277eacf09SStefano Zampini } 71377eacf09SStefano Zampini } 71477eacf09SStefano Zampini } 71577eacf09SStefano Zampini } 71677eacf09SStefano Zampini for (p=fStart;p<fEnd;p++) { 71777eacf09SStefano Zampini const PetscInt *support; 7188135c375SStefano Zampini PetscInt supportSize; 71977eacf09SStefano Zampini PetscBool isbf = PETSC_FALSE; 7208135c375SStefano Zampini 7218135c375SStefano Zampini ierr = DMPlexGetSupportSize(dm,p,&supportSize);CHKERRQ(ierr); 7223e6c54aaSStefano Zampini if (pown) { 7238135c375SStefano Zampini PetscBool has_owned = PETSC_FALSE, has_ghost = PETSC_FALSE; 72477eacf09SStefano Zampini PetscInt i; 72577eacf09SStefano Zampini 72677eacf09SStefano Zampini ierr = DMPlexGetSupport(dm,p,&support);CHKERRQ(ierr); 72777eacf09SStefano Zampini for (i=0;i<supportSize;i++) { 72877eacf09SStefano Zampini if (PetscLikely(PetscBTLookup(pown,support[i]-cStart))) has_owned = PETSC_TRUE; 72977eacf09SStefano Zampini else has_ghost = PETSC_TRUE; 73077eacf09SStefano Zampini } 73177eacf09SStefano Zampini isbf = (PetscBool)((supportSize == 1 && has_owned) || (supportSize > 1 && has_owned && has_ghost)); 73277eacf09SStefano Zampini } else { 73377eacf09SStefano Zampini isbf = (PetscBool)(supportSize == 1); 73477eacf09SStefano Zampini } 73577eacf09SStefano Zampini if (!isbf && perLabel) { 73677eacf09SStefano Zampini const PetscInt *cone; 73777eacf09SStefano Zampini PetscInt coneSize,i; 73877eacf09SStefano Zampini 73977eacf09SStefano Zampini ierr = DMPlexGetCone(dm,p,&cone);CHKERRQ(ierr); 74077eacf09SStefano Zampini ierr = DMPlexGetConeSize(dm,p,&coneSize);CHKERRQ(ierr); 74177eacf09SStefano Zampini isbf = PETSC_TRUE; 74277eacf09SStefano Zampini for (i=0;i<coneSize;i++) { 74377eacf09SStefano Zampini PetscInt v,d; 74477eacf09SStefano Zampini 74577eacf09SStefano Zampini ierr = DMLabelGetValue(perLabel,cone[i],&v);CHKERRQ(ierr); 74677eacf09SStefano Zampini ierr = DMLabelGetDefaultValue(perLabel,&d);CHKERRQ(ierr); 74777eacf09SStefano Zampini isbf = (PetscBool)(isbf && v != d); 74877eacf09SStefano Zampini } 74977eacf09SStefano Zampini } 75077eacf09SStefano Zampini if (isbf) { 75177eacf09SStefano Zampini ierr = PetscBTSet(bfaces,p-fStart);CHKERRQ(ierr); 75277eacf09SStefano Zampini } 75377eacf09SStefano Zampini } 75477eacf09SStefano Zampini /* count boundary faces */ 75577eacf09SStefano Zampini for (p=fStart,bf=0;p<fEnd;p++) { 75677eacf09SStefano Zampini if (PetscUnlikely(PetscBTLookup(bfaces,p-fStart))) { 75777eacf09SStefano Zampini const PetscInt *support; 75877eacf09SStefano Zampini PetscInt supportSize,c; 7598135c375SStefano Zampini 7608135c375SStefano Zampini ierr = DMPlexGetSupportSize(dm,p,&supportSize);CHKERRQ(ierr); 7618135c375SStefano Zampini ierr = DMPlexGetSupport(dm,p,&support);CHKERRQ(ierr); 7623e6c54aaSStefano Zampini if (pown) { 76377eacf09SStefano Zampini for (c=0;c<supportSize;c++) { 76477eacf09SStefano Zampini if (PetscLikely(PetscBTLookup(pown,support[c]-cStart))) { 76577eacf09SStefano Zampini bf++; 7668135c375SStefano Zampini } 76777eacf09SStefano Zampini } 76877eacf09SStefano Zampini } else bf += supportSize; 7698135c375SStefano Zampini } 7708135c375SStefano Zampini } 7717bf4dd16SStefano Zampini ierr = DMGetLabel(dm,bmark,&label);CHKERRQ(ierr); 7728135c375SStefano Zampini ierr = PetscViewerASCIIPrintf(viewer,"%D\n",bf);CHKERRQ(ierr); 7738135c375SStefano Zampini for (p=fStart;p<fEnd;p++) { 77477eacf09SStefano Zampini if (PetscUnlikely(PetscBTLookup(bfaces,p-fStart))) { 7758135c375SStefano Zampini const PetscInt *support; 77677eacf09SStefano Zampini PetscInt supportSize,c,nc = 0; 7778135c375SStefano Zampini 7788135c375SStefano Zampini ierr = DMPlexGetSupportSize(dm,p,&supportSize);CHKERRQ(ierr); 7798135c375SStefano Zampini ierr = DMPlexGetSupport(dm,p,&support);CHKERRQ(ierr); 7803e6c54aaSStefano Zampini if (pown) { 78177eacf09SStefano Zampini for (c=0;c<supportSize;c++) { 78277eacf09SStefano Zampini if (PetscLikely(PetscBTLookup(pown,support[c]-cStart))) { 78377eacf09SStefano Zampini fcells[nc++] = support[c]; 7848135c375SStefano Zampini } 78577eacf09SStefano Zampini } 78677eacf09SStefano Zampini } else for (c=0;c<supportSize;c++) fcells[nc++] = support[c]; 78777eacf09SStefano Zampini for (c=0;c<nc;c++) { 78877eacf09SStefano Zampini const PetscInt *cone; 78977eacf09SStefano Zampini int vids[8]; 79077eacf09SStefano Zampini PetscInt i,cell,cl,nv,cid = -1,mid = -1; 7918135c375SStefano Zampini 79277eacf09SStefano Zampini cell = fcells[c]; 79377eacf09SStefano Zampini ierr = DMPlexGetCone(dm,cell,&cone);CHKERRQ(ierr); 79477eacf09SStefano Zampini for (cl=0;cl<fpc;cl++) 79577eacf09SStefano Zampini if (cone[cl] == p) 7968135c375SStefano Zampini break; 7978135c375SStefano Zampini 79877eacf09SStefano Zampini /* face material id and type */ 7998135c375SStefano Zampini ierr = DMPlexGetPointMFEMCellID_Internal(dm,label,p,&mid,&cid);CHKERRQ(ierr); 8008135c375SStefano Zampini ierr = PetscViewerASCIIPrintf(viewer,"%D %D",mid,cid);CHKERRQ(ierr); 80177eacf09SStefano Zampini /* vertex ids */ 80277eacf09SStefano Zampini ierr = DMPlexGetPointMFEMVertexIDs_Internal(dm,cell,(localized && !hovec) ? coordSection : NULL,&nv,vids);CHKERRQ(ierr); 8038135c375SStefano Zampini for (i=0;i<vpf;i++) { 804b56f74b9SBarry Smith ierr = PetscViewerASCIIPrintf(viewer," %d",vids[faces[cl*vpf+i]]);CHKERRQ(ierr); 8058135c375SStefano Zampini } 8068135c375SStefano Zampini ierr = PetscViewerASCIIPrintf(viewer,"\n");CHKERRQ(ierr); 80777eacf09SStefano Zampini } 80877eacf09SStefano Zampini bf = bf-nc; 8098135c375SStefano Zampini } 8108135c375SStefano Zampini } 81177eacf09SStefano Zampini if (bf) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Remaining boundary faces %D",bf); 81277eacf09SStefano Zampini ierr = PetscBTDestroy(&bfaces);CHKERRQ(ierr); 81377eacf09SStefano Zampini ierr = PetscFree(fcells);CHKERRQ(ierr); 8148135c375SStefano Zampini } 8158135c375SStefano Zampini 8168135c375SStefano Zampini /* mark owned vertices */ 8173e6c54aaSStefano Zampini vown = NULL; 8183e6c54aaSStefano Zampini if (pown) { 8193e6c54aaSStefano Zampini ierr = PetscBTCreate(vEnd-vStart,&vown);CHKERRQ(ierr); 8208135c375SStefano Zampini for (p=cStart;p<cEnd;p++) { 8218135c375SStefano Zampini PetscInt i,closureSize,*closure = NULL; 8228135c375SStefano Zampini 8233e6c54aaSStefano Zampini if (PetscUnlikely(!PetscBTLookup(pown,p-cStart))) continue; 8248135c375SStefano Zampini ierr = DMPlexGetTransitiveClosure(dm,p,PETSC_TRUE,&closureSize,&closure);CHKERRQ(ierr); 8258135c375SStefano Zampini for (i=0;i<closureSize;i++) { 8268135c375SStefano Zampini const PetscInt pp = closure[2*i]; 8278135c375SStefano Zampini 8288135c375SStefano Zampini if (pp >= vStart && pp < vEnd) { 8293e6c54aaSStefano Zampini ierr = PetscBTSet(vown,pp-vStart);CHKERRQ(ierr); 8308135c375SStefano Zampini } 8318135c375SStefano Zampini } 8328135c375SStefano Zampini ierr = DMPlexRestoreTransitiveClosure(dm,p,PETSC_TRUE,&closureSize,&closure);CHKERRQ(ierr); 8338135c375SStefano Zampini } 8348135c375SStefano Zampini } 8358135c375SStefano Zampini 8368135c375SStefano Zampini /* vertex_parents (Non-conforming meshes) */ 8378135c375SStefano Zampini parentSection = NULL; 8388135c375SStefano Zampini if (enable_ncmesh) { 8398135c375SStefano Zampini ierr = DMPlexGetTree(dm,&parentSection,NULL,NULL,NULL,NULL);CHKERRQ(ierr); 8408135c375SStefano Zampini } 8418135c375SStefano Zampini if (parentSection) { 8428135c375SStefano Zampini PetscInt vp,gvp; 8438135c375SStefano Zampini 8448135c375SStefano Zampini for (vp=0,p=vStart;p<vEnd;p++) { 8458135c375SStefano Zampini DMLabel dlabel; 8468135c375SStefano Zampini PetscInt parent,depth; 8478135c375SStefano Zampini 8483e6c54aaSStefano Zampini if (PetscUnlikely(vown && !PetscBTLookup(vown,p-vStart))) continue; 8498135c375SStefano Zampini ierr = DMPlexGetDepthLabel(dm,&dlabel);CHKERRQ(ierr); 8508135c375SStefano Zampini ierr = DMLabelGetValue(dlabel,p,&depth);CHKERRQ(ierr); 8518135c375SStefano Zampini ierr = DMPlexGetTreeParent(dm,p,&parent,NULL);CHKERRQ(ierr); 8528135c375SStefano Zampini if (parent != p) vp++; 8538135c375SStefano Zampini } 8548135c375SStefano Zampini ierr = MPIU_Allreduce(&vp,&gvp,1,MPIU_INT,MPI_SUM,PetscObjectComm((PetscObject)dm));CHKERRQ(ierr); 8558135c375SStefano Zampini if (gvp) { 8568135c375SStefano Zampini PetscInt maxsupp; 8578135c375SStefano Zampini PetscBool *skip = NULL; 8588135c375SStefano Zampini 8598135c375SStefano Zampini ierr = PetscViewerASCIIPrintf(viewer,"\nvertex_parents\n");CHKERRQ(ierr); 8608135c375SStefano Zampini ierr = PetscViewerASCIIPrintf(viewer,"%D\n",vp);CHKERRQ(ierr); 8618135c375SStefano Zampini ierr = DMPlexGetMaxSizes(dm,NULL,&maxsupp);CHKERRQ(ierr); 8628135c375SStefano Zampini ierr = PetscMalloc1(maxsupp,&skip);CHKERRQ(ierr); 8638135c375SStefano Zampini for (p=vStart;p<vEnd;p++) { 8648135c375SStefano Zampini DMLabel dlabel; 8658135c375SStefano Zampini PetscInt parent; 8668135c375SStefano Zampini 8673e6c54aaSStefano Zampini if (PetscUnlikely(vown && !PetscBTLookup(vown,p-vStart))) continue; 8688135c375SStefano Zampini ierr = DMPlexGetDepthLabel(dm,&dlabel);CHKERRQ(ierr); 8698135c375SStefano Zampini ierr = DMPlexGetTreeParent(dm,p,&parent,NULL);CHKERRQ(ierr); 8708135c375SStefano Zampini if (parent != p) { 871d42aff11SStefano Zampini int vids[8] = { -1, -1, -1, -1, -1, -1, -1, -1 }; /* silent overzealous clang static analyzer */ 8723924b612SStefano Zampini PetscInt i,nv,ssize,n,numChildren,depth = -1; 8738135c375SStefano Zampini const PetscInt *children; 8743924b612SStefano Zampini 8753924b612SStefano Zampini ierr = DMPlexGetConeSize(dm,parent,&ssize);CHKERRQ(ierr); 8763924b612SStefano Zampini switch (ssize) { 8778135c375SStefano Zampini case 2: /* edge */ 8788135c375SStefano Zampini nv = 0; 879cc0d3ed7SStefano Zampini ierr = DMPlexGetPointMFEMVertexIDs_Internal(dm,parent,localized ? coordSection : NULL,&nv,vids);CHKERRQ(ierr); 88077eacf09SStefano Zampini ierr = DMPlexInvertCell(dim,nv,vids);CHKERRQ(ierr); 8818135c375SStefano Zampini ierr = PetscViewerASCIIPrintf(viewer,"%D",p-vStart);CHKERRQ(ierr); 8828135c375SStefano Zampini for (i=0;i<nv;i++) { 883bfadf1d8SStefano Zampini ierr = PetscViewerASCIIPrintf(viewer," %D",(PetscInt)vids[i]);CHKERRQ(ierr); 8848135c375SStefano Zampini } 8858135c375SStefano Zampini ierr = PetscViewerASCIIPrintf(viewer,"\n");CHKERRQ(ierr); 8868135c375SStefano Zampini vp--; 8878135c375SStefano Zampini break; 8888135c375SStefano Zampini case 4: /* face */ 8898135c375SStefano Zampini ierr = DMPlexGetTreeChildren(dm,parent,&numChildren,&children);CHKERRQ(ierr); 8908135c375SStefano Zampini for (n=0;n<numChildren;n++) { 8918135c375SStefano Zampini ierr = DMLabelGetValue(dlabel,children[n],&depth);CHKERRQ(ierr); 8928135c375SStefano Zampini if (!depth) { 8938135c375SStefano Zampini const PetscInt *hvsupp,*hesupp,*cone; 8948135c375SStefano Zampini PetscInt hvsuppSize,hesuppSize,coneSize; 895451a39c7SStefano Zampini PetscInt hv = children[n],he = -1,f; 8968135c375SStefano Zampini 897451a39c7SStefano Zampini ierr = PetscMemzero(skip,maxsupp*sizeof(PetscBool));CHKERRQ(ierr); 8988135c375SStefano Zampini ierr = DMPlexGetSupportSize(dm,hv,&hvsuppSize);CHKERRQ(ierr); 8998135c375SStefano Zampini ierr = DMPlexGetSupport(dm,hv,&hvsupp);CHKERRQ(ierr); 9008135c375SStefano Zampini for (i=0;i<hvsuppSize;i++) { 9018135c375SStefano Zampini PetscInt ep; 9028135c375SStefano Zampini ierr = DMPlexGetTreeParent(dm,hvsupp[i],&ep,NULL);CHKERRQ(ierr); 9038135c375SStefano Zampini if (ep != hvsupp[i]) { 9048135c375SStefano Zampini he = hvsupp[i]; 9058135c375SStefano Zampini } else { 9068135c375SStefano Zampini skip[i] = PETSC_TRUE; 9078135c375SStefano Zampini } 9088135c375SStefano Zampini } 909451a39c7SStefano Zampini if (he == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_SUP,"Vertex %D support size %D: hanging edge not found",hv,hvsuppSize); 9108135c375SStefano Zampini ierr = DMPlexGetCone(dm,he,&cone);CHKERRQ(ierr); 91111a4995dSStefano Zampini vids[0] = (int)((cone[0] == hv) ? cone[1] : cone[0]); 9128135c375SStefano Zampini ierr = DMPlexGetSupportSize(dm,he,&hesuppSize);CHKERRQ(ierr); 9138135c375SStefano Zampini ierr = DMPlexGetSupport(dm,he,&hesupp);CHKERRQ(ierr); 9148135c375SStefano Zampini for (f=0;f<hesuppSize;f++) { 9158135c375SStefano Zampini PetscInt j; 9168135c375SStefano Zampini 9178135c375SStefano Zampini ierr = DMPlexGetCone(dm,hesupp[f],&cone);CHKERRQ(ierr); 9188135c375SStefano Zampini ierr = DMPlexGetConeSize(dm,hesupp[f],&coneSize);CHKERRQ(ierr); 9198135c375SStefano Zampini for (j=0;j<coneSize;j++) { 9208135c375SStefano Zampini PetscInt k; 9218135c375SStefano Zampini for (k=0;k<hvsuppSize;k++) { 9228135c375SStefano Zampini if (hvsupp[k] == cone[j]) { 9238135c375SStefano Zampini skip[k] = PETSC_TRUE; 9248135c375SStefano Zampini break; 9258135c375SStefano Zampini } 9268135c375SStefano Zampini } 9278135c375SStefano Zampini } 9288135c375SStefano Zampini } 9298135c375SStefano Zampini for (i=0;i<hvsuppSize;i++) { 9308135c375SStefano Zampini if (!skip[i]) { 9318135c375SStefano Zampini ierr = DMPlexGetCone(dm,hvsupp[i],&cone);CHKERRQ(ierr); 93211a4995dSStefano Zampini vids[1] = (int)((cone[0] == hv) ? cone[1] : cone[0]); 9338135c375SStefano Zampini } 9348135c375SStefano Zampini } 9358135c375SStefano Zampini ierr = PetscViewerASCIIPrintf(viewer,"%D",hv-vStart);CHKERRQ(ierr); 9368135c375SStefano Zampini for (i=0;i<2;i++) { 937bfadf1d8SStefano Zampini ierr = PetscViewerASCIIPrintf(viewer," %D",(PetscInt)(vids[i]-vStart));CHKERRQ(ierr); 9388135c375SStefano Zampini } 9398135c375SStefano Zampini ierr = PetscViewerASCIIPrintf(viewer,"\n");CHKERRQ(ierr); 9408135c375SStefano Zampini vp--; 9418135c375SStefano Zampini } 9428135c375SStefano Zampini } 9438135c375SStefano Zampini break; 9448135c375SStefano Zampini default: 9453924b612SStefano Zampini SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"Don't know how to deal with support size %D",ssize); 9468135c375SStefano Zampini } 9478135c375SStefano Zampini } 9488135c375SStefano Zampini } 9498135c375SStefano Zampini ierr = PetscFree(skip);CHKERRQ(ierr); 9508135c375SStefano Zampini } 9518135c375SStefano Zampini if (vp) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Unexpected %D hanging vertices",vp); 9528135c375SStefano Zampini } 9538135c375SStefano Zampini ierr = PetscBTDestroy(&pown);CHKERRQ(ierr); 9543e6c54aaSStefano Zampini ierr = PetscBTDestroy(&vown);CHKERRQ(ierr); 9558135c375SStefano Zampini 9568135c375SStefano Zampini /* vertices */ 95777eacf09SStefano Zampini if (hovec) { /* higher-order meshes */ 95877eacf09SStefano Zampini const char *fec; 95977eacf09SStefano Zampini PetscInt i,n; 96077eacf09SStefano Zampini 96177eacf09SStefano Zampini ierr = PetscViewerASCIIPrintf(viewer,"\nvertices\n");CHKERRQ(ierr); 96277eacf09SStefano Zampini ierr = PetscViewerASCIIPrintf(viewer,"%D\n",vEnd-vStart);CHKERRQ(ierr); 96377eacf09SStefano Zampini ierr = PetscViewerASCIIPrintf(viewer,"nodes\n");CHKERRQ(ierr); 96477eacf09SStefano Zampini ierr = PetscObjectGetName((PetscObject)hovec,&fec);CHKERRQ(ierr); 96577eacf09SStefano Zampini ierr = PetscViewerASCIIPrintf(viewer,"FiniteElementSpace\n");CHKERRQ(ierr); 9663e7cab22SLisandro Dalcin ierr = PetscViewerASCIIPrintf(viewer,"%s\n",fec);CHKERRQ(ierr); 96777eacf09SStefano Zampini ierr = PetscViewerASCIIPrintf(viewer,"VDim: %D\n",sdim);CHKERRQ(ierr); 96877eacf09SStefano Zampini ierr = PetscViewerASCIIPrintf(viewer,"Ordering: 1\n\n");CHKERRQ(ierr); /*Ordering::byVDIM*/ 96977eacf09SStefano Zampini ierr = VecGetArrayRead(hovec,&array);CHKERRQ(ierr); 97077eacf09SStefano Zampini ierr = VecGetLocalSize(hovec,&n);CHKERRQ(ierr); 97177eacf09SStefano Zampini if (n%sdim) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_USER,"Size of local coordinate vector %D incompatible with space dimension %D",n,sdim); 97277eacf09SStefano Zampini for (i=0;i<n/sdim;i++) { 97377eacf09SStefano Zampini PetscInt s; 97477eacf09SStefano Zampini for (s=0;s<sdim;s++) { 97577eacf09SStefano Zampini ierr = PetscViewerASCIIPrintf(viewer,fmt,PetscRealPart(array[i*sdim+s]));CHKERRQ(ierr); 97677eacf09SStefano Zampini } 97777eacf09SStefano Zampini ierr = PetscViewerASCIIPrintf(viewer,"\n");CHKERRQ(ierr); 97877eacf09SStefano Zampini } 97977eacf09SStefano Zampini ierr = VecRestoreArrayRead(hovec,&array);CHKERRQ(ierr); 98077eacf09SStefano Zampini } else { 981cc0d3ed7SStefano Zampini ierr = VecGetLocalSize(coordinates,&nvert);CHKERRQ(ierr); 9828135c375SStefano Zampini ierr = PetscViewerASCIIPrintf(viewer,"\nvertices\n");CHKERRQ(ierr); 983cc0d3ed7SStefano Zampini ierr = PetscViewerASCIIPrintf(viewer,"%D\n",nvert/sdim);CHKERRQ(ierr); 9848135c375SStefano Zampini ierr = PetscViewerASCIIPrintf(viewer,"%D\n",sdim);CHKERRQ(ierr); 9858135c375SStefano Zampini ierr = VecGetArrayRead(coordinates,&array);CHKERRQ(ierr); 986cc0d3ed7SStefano Zampini for (p=0;p<nvert/sdim;p++) { 987cc0d3ed7SStefano Zampini PetscInt s; 988cc0d3ed7SStefano Zampini for (s=0;s<sdim;s++) { 98977eacf09SStefano Zampini ierr = PetscViewerASCIIPrintf(viewer,fmt,PetscRealPart(array[p*sdim+s]));CHKERRQ(ierr); 9908135c375SStefano Zampini } 991cc0d3ed7SStefano Zampini ierr = PetscViewerASCIIPrintf(viewer,"\n");CHKERRQ(ierr); 9928135c375SStefano Zampini } 9938135c375SStefano Zampini ierr = VecRestoreArrayRead(coordinates,&array);CHKERRQ(ierr); 99477eacf09SStefano Zampini } 9958135c375SStefano Zampini PetscFunctionReturn(0); 9968135c375SStefano Zampini } 9978135c375SStefano Zampini 9988135c375SStefano Zampini /* dispatching, prints through the socket by prepending the mesh keyword to the usual ASCII dump */ 9998135c375SStefano Zampini PETSC_INTERN PetscErrorCode DMPlexView_GLVis(DM dm, PetscViewer viewer) 10008135c375SStefano Zampini { 10018135c375SStefano Zampini PetscErrorCode ierr; 10028135c375SStefano Zampini PetscBool isglvis,isascii; 10038135c375SStefano Zampini 10048135c375SStefano Zampini PetscFunctionBegin; 10058135c375SStefano Zampini PetscValidHeaderSpecific(dm,DM_CLASSID,1); 10068135c375SStefano Zampini PetscValidHeaderSpecific(viewer,PETSC_VIEWER_CLASSID,2); 10078135c375SStefano Zampini ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERGLVIS,&isglvis);CHKERRQ(ierr); 10088135c375SStefano Zampini ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&isascii);CHKERRQ(ierr); 10098135c375SStefano Zampini if (!isglvis && !isascii) SETERRQ(PetscObjectComm((PetscObject)viewer),PETSC_ERR_SUP,"Viewer must be of type VIEWERGLVIS or VIEWERASCII"); 10108135c375SStefano Zampini if (isglvis) { 10118135c375SStefano Zampini PetscViewer view; 10128135c375SStefano Zampini PetscViewerGLVisType type; 10138135c375SStefano Zampini 10148135c375SStefano Zampini ierr = PetscViewerGLVisGetType_Private(viewer,&type);CHKERRQ(ierr); 10158135c375SStefano Zampini ierr = PetscViewerGLVisGetDMWindow_Private(viewer,&view);CHKERRQ(ierr); 10168135c375SStefano Zampini if (view) { /* in the socket case, it may happen that the connection failed */ 10178135c375SStefano Zampini if (type == PETSC_VIEWER_GLVIS_SOCKET) { 10188135c375SStefano Zampini PetscMPIInt size,rank; 10193924b612SStefano Zampini 10208135c375SStefano Zampini ierr = MPI_Comm_size(PetscObjectComm((PetscObject)dm),&size);CHKERRQ(ierr); 10218135c375SStefano Zampini ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)dm),&rank);CHKERRQ(ierr); 1022b56f74b9SBarry Smith ierr = PetscViewerASCIIPrintf(view,"parallel %d %d\nmesh\n",size,rank);CHKERRQ(ierr); 10238135c375SStefano Zampini } 10248135c375SStefano Zampini ierr = DMPlexView_GLVis_ASCII(dm,view);CHKERRQ(ierr); 10258135c375SStefano Zampini ierr = PetscViewerFlush(view);CHKERRQ(ierr); 10268135c375SStefano Zampini if (type == PETSC_VIEWER_GLVIS_SOCKET) { 10278135c375SStefano Zampini PetscInt dim; 10288135c375SStefano Zampini const char* name; 10298135c375SStefano Zampini 10308135c375SStefano Zampini ierr = PetscObjectGetName((PetscObject)dm,&name);CHKERRQ(ierr); 10318135c375SStefano Zampini ierr = DMGetDimension(dm,&dim);CHKERRQ(ierr); 10328135c375SStefano Zampini ierr = PetscViewerGLVisInitWindow_Private(view,PETSC_TRUE,dim,name);CHKERRQ(ierr); 10338135c375SStefano Zampini ierr = PetscBarrier((PetscObject)dm);CHKERRQ(ierr); 10348135c375SStefano Zampini } 10358135c375SStefano Zampini } 10368135c375SStefano Zampini } else { 10378135c375SStefano Zampini ierr = DMPlexView_GLVis_ASCII(dm,viewer);CHKERRQ(ierr); 10388135c375SStefano Zampini } 10398135c375SStefano Zampini PetscFunctionReturn(0); 10408135c375SStefano Zampini } 1041