120282da2SJoe Wallwork #include <petsc/private/dmpleximpl.h> /*I "petscdmplex.h" I*/ 220282da2SJoe Wallwork #include <petscblaslapack.h> 320282da2SJoe Wallwork 4fe902aceSJoe Wallwork PetscLogEvent DMPLEX_MetricEnforceSPD, DMPLEX_MetricNormalize, DMPLEX_MetricAverage, DMPLEX_MetricIntersection; 5fe902aceSJoe Wallwork 631b70465SJoe Wallwork PetscErrorCode DMPlexMetricSetFromOptions(DM dm) 731b70465SJoe Wallwork { 8*bc00d7afSJoe Wallwork DM_Plex *plex = (DM_Plex *) dm->data; 931b70465SJoe Wallwork MPI_Comm comm; 1093520041SJoe Wallwork PetscBool isotropic = PETSC_FALSE, uniform = PETSC_FALSE, restrictAnisotropyFirst = PETSC_FALSE; 1176f360caSJoe Wallwork PetscBool noInsert = PETSC_FALSE, noSwap = PETSC_FALSE, noMove = PETSC_FALSE, noSurf = PETSC_FALSE; 12cc2eee55SJoe Wallwork PetscInt verbosity = -1, numIter = 3; 13ae8b063eSJoe Wallwork PetscReal h_min = 1.0e-30, h_max = 1.0e+30, a_max = 1.0e+05, p = 1.0, target = 1000.0, beta = 1.3, hausd = 0.01; 1431b70465SJoe Wallwork 1531b70465SJoe Wallwork PetscFunctionBegin; 16*bc00d7afSJoe Wallwork if (!plex->metricCtx) PetscCall(PetscNew(&plex->metricCtx)); 179566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject) dm, &comm)); 18d0609cedSBarry Smith PetscOptionsBegin(comm, "", "Riemannian metric options", "DMPlexMetric"); 199566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-dm_plex_metric_isotropic", "Is the metric isotropic?", "DMPlexMetricCreateIsotropic", isotropic, &isotropic, NULL)); 209566063dSJacob Faibussowitsch PetscCall(DMPlexMetricSetIsotropic(dm, isotropic)); 219566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-dm_plex_metric_uniform", "Is the metric uniform?", "DMPlexMetricCreateUniform", uniform, &uniform, NULL)); 229566063dSJacob Faibussowitsch PetscCall(DMPlexMetricSetUniform(dm, uniform)); 239566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-dm_plex_metric_restrict_anisotropy_first", "Should anisotropy be restricted before normalization?", "DMPlexNormalize", restrictAnisotropyFirst, &restrictAnisotropyFirst, NULL)); 249566063dSJacob Faibussowitsch PetscCall(DMPlexMetricSetRestrictAnisotropyFirst(dm, restrictAnisotropyFirst)); 259566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-dm_plex_metric_no_insert", "Turn off node insertion and deletion", "DMAdaptMetric", noInsert, &noInsert, NULL)); 269566063dSJacob Faibussowitsch PetscCall(DMPlexMetricSetNoInsertion(dm, noInsert)); 279566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-dm_plex_metric_no_swap", "Turn off facet swapping", "DMAdaptMetric", noSwap, &noSwap, NULL)); 289566063dSJacob Faibussowitsch PetscCall(DMPlexMetricSetNoSwapping(dm, noSwap)); 299566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-dm_plex_metric_no_move", "Turn off facet node movement", "DMAdaptMetric", noMove, &noMove, NULL)); 309566063dSJacob Faibussowitsch PetscCall(DMPlexMetricSetNoMovement(dm, noMove)); 319566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-dm_plex_metric_no_surf", "Turn off surface modification", "DMAdaptMetric", noSurf, &noSurf, NULL)); 329566063dSJacob Faibussowitsch PetscCall(DMPlexMetricSetNoSurf(dm, noSurf)); 339566063dSJacob Faibussowitsch PetscCall(PetscOptionsBoundedInt("-dm_plex_metric_num_iterations", "Number of ParMmg adaptation iterations", "DMAdaptMetric", numIter, &numIter, NULL, 0)); 349566063dSJacob Faibussowitsch PetscCall(DMPlexMetricSetNumIterations(dm, numIter)); 359566063dSJacob Faibussowitsch PetscCall(PetscOptionsRangeInt("-dm_plex_metric_verbosity", "Verbosity of metric-based mesh adaptation package (-1 = silent, 10 = maximum)", "DMAdaptMetric", verbosity, &verbosity, NULL, -1, 10)); 369566063dSJacob Faibussowitsch PetscCall(DMPlexMetricSetVerbosity(dm, verbosity)); 379566063dSJacob Faibussowitsch PetscCall(PetscOptionsReal("-dm_plex_metric_h_min", "Minimum tolerated metric magnitude", "DMPlexMetricEnforceSPD", h_min, &h_min, NULL)); 389566063dSJacob Faibussowitsch PetscCall(DMPlexMetricSetMinimumMagnitude(dm, h_min)); 399566063dSJacob Faibussowitsch PetscCall(PetscOptionsReal("-dm_plex_metric_h_max", "Maximum tolerated metric magnitude", "DMPlexMetricEnforceSPD", h_max, &h_max, NULL)); 409566063dSJacob Faibussowitsch PetscCall(DMPlexMetricSetMaximumMagnitude(dm, h_max)); 419566063dSJacob Faibussowitsch PetscCall(PetscOptionsReal("-dm_plex_metric_a_max", "Maximum tolerated anisotropy", "DMPlexMetricEnforceSPD", a_max, &a_max, NULL)); 429566063dSJacob Faibussowitsch PetscCall(DMPlexMetricSetMaximumAnisotropy(dm, a_max)); 439566063dSJacob Faibussowitsch PetscCall(PetscOptionsReal("-dm_plex_metric_p", "L-p normalization order", "DMPlexMetricNormalize", p, &p, NULL)); 449566063dSJacob Faibussowitsch PetscCall(DMPlexMetricSetNormalizationOrder(dm, p)); 459566063dSJacob Faibussowitsch PetscCall(PetscOptionsReal("-dm_plex_metric_target_complexity", "Target metric complexity", "DMPlexMetricNormalize", target, &target, NULL)); 469566063dSJacob Faibussowitsch PetscCall(DMPlexMetricSetTargetComplexity(dm, target)); 479566063dSJacob Faibussowitsch PetscCall(PetscOptionsReal("-dm_plex_metric_gradation_factor", "Metric gradation factor", "DMAdaptMetric", beta, &beta, NULL)); 489566063dSJacob Faibussowitsch PetscCall(DMPlexMetricSetGradationFactor(dm, beta)); 499566063dSJacob Faibussowitsch PetscCall(PetscOptionsReal("-dm_plex_metric_hausdorff_number", "Metric Hausdorff number", "DMAdaptMetric", hausd, &hausd, NULL)); 509566063dSJacob Faibussowitsch PetscCall(DMPlexMetricSetHausdorffNumber(dm, hausd)); 51d0609cedSBarry Smith PetscOptionsEnd(); 5231b70465SJoe Wallwork PetscFunctionReturn(0); 5331b70465SJoe Wallwork } 5431b70465SJoe Wallwork 55cb7bfe8cSJoe Wallwork /*@ 5631b70465SJoe Wallwork DMPlexMetricSetIsotropic - Record whether a metric is isotropic 5731b70465SJoe Wallwork 5831b70465SJoe Wallwork Input parameters: 5931b70465SJoe Wallwork + dm - The DM 6031b70465SJoe Wallwork - isotropic - Is the metric isotropic? 6131b70465SJoe Wallwork 6231b70465SJoe Wallwork Level: beginner 6331b70465SJoe Wallwork 6493520041SJoe Wallwork .seealso: DMPlexMetricIsIsotropic(), DMPlexMetricSetUniform(), DMPlexMetricSetRestrictAnisotropyFirst() 65cb7bfe8cSJoe Wallwork @*/ 6631b70465SJoe Wallwork PetscErrorCode DMPlexMetricSetIsotropic(DM dm, PetscBool isotropic) 6731b70465SJoe Wallwork { 6831b70465SJoe Wallwork DM_Plex *plex = (DM_Plex *) dm->data; 6931b70465SJoe Wallwork 7031b70465SJoe Wallwork PetscFunctionBegin; 71*bc00d7afSJoe Wallwork if (!plex->metricCtx) PetscCall(DMPlexMetricSetFromOptions(dm)); 7231b70465SJoe Wallwork plex->metricCtx->isotropic = isotropic; 7331b70465SJoe Wallwork PetscFunctionReturn(0); 7431b70465SJoe Wallwork } 7531b70465SJoe Wallwork 76cb7bfe8cSJoe Wallwork /*@ 7793520041SJoe Wallwork DMPlexMetricIsIsotropic - Is a metric isotropic? 7831b70465SJoe Wallwork 7931b70465SJoe Wallwork Input parameters: 8031b70465SJoe Wallwork . dm - The DM 8131b70465SJoe Wallwork 8231b70465SJoe Wallwork Output parameters: 8331b70465SJoe Wallwork . isotropic - Is the metric isotropic? 8431b70465SJoe Wallwork 8531b70465SJoe Wallwork Level: beginner 8631b70465SJoe Wallwork 8793520041SJoe Wallwork .seealso: DMPlexMetricSetIsotropic(), DMPlexMetricIsUniform(), DMPlexMetricRestrictAnisotropyFirst() 88cb7bfe8cSJoe Wallwork @*/ 8931b70465SJoe Wallwork PetscErrorCode DMPlexMetricIsIsotropic(DM dm, PetscBool *isotropic) 9031b70465SJoe Wallwork { 9131b70465SJoe Wallwork DM_Plex *plex = (DM_Plex *) dm->data; 9231b70465SJoe Wallwork 9331b70465SJoe Wallwork PetscFunctionBegin; 94*bc00d7afSJoe Wallwork if (!plex->metricCtx) PetscCall(DMPlexMetricSetFromOptions(dm)); 9531b70465SJoe Wallwork *isotropic = plex->metricCtx->isotropic; 9631b70465SJoe Wallwork PetscFunctionReturn(0); 9731b70465SJoe Wallwork } 9831b70465SJoe Wallwork 99cb7bfe8cSJoe Wallwork /*@ 10093520041SJoe Wallwork DMPlexMetricSetUniform - Record whether a metric is uniform 10193520041SJoe Wallwork 10293520041SJoe Wallwork Input parameters: 10393520041SJoe Wallwork + dm - The DM 10493520041SJoe Wallwork - uniform - Is the metric uniform? 10593520041SJoe Wallwork 10693520041SJoe Wallwork Level: beginner 10793520041SJoe Wallwork 10893520041SJoe Wallwork Notes: 10993520041SJoe Wallwork 11093520041SJoe Wallwork If the metric is specified as uniform then it is assumed to be isotropic, too. 11193520041SJoe Wallwork 11293520041SJoe Wallwork .seealso: DMPlexMetricIsUniform(), DMPlexMetricSetIsotropic(), DMPlexMetricSetRestrictAnisotropyFirst() 11393520041SJoe Wallwork @*/ 11493520041SJoe Wallwork PetscErrorCode DMPlexMetricSetUniform(DM dm, PetscBool uniform) 11593520041SJoe Wallwork { 11693520041SJoe Wallwork DM_Plex *plex = (DM_Plex *) dm->data; 11793520041SJoe Wallwork 11893520041SJoe Wallwork PetscFunctionBegin; 119*bc00d7afSJoe Wallwork if (!plex->metricCtx) PetscCall(DMPlexMetricSetFromOptions(dm)); 12093520041SJoe Wallwork plex->metricCtx->uniform = uniform; 12193520041SJoe Wallwork if (uniform) plex->metricCtx->isotropic = uniform; 12293520041SJoe Wallwork PetscFunctionReturn(0); 12393520041SJoe Wallwork } 12493520041SJoe Wallwork 12593520041SJoe Wallwork /*@ 12693520041SJoe Wallwork DMPlexMetricIsUniform - Is a metric uniform? 12793520041SJoe Wallwork 12893520041SJoe Wallwork Input parameters: 12993520041SJoe Wallwork . dm - The DM 13093520041SJoe Wallwork 13193520041SJoe Wallwork Output parameters: 13293520041SJoe Wallwork . uniform - Is the metric uniform? 13393520041SJoe Wallwork 13493520041SJoe Wallwork Level: beginner 13593520041SJoe Wallwork 13693520041SJoe Wallwork .seealso: DMPlexMetricSetUniform(), DMPlexMetricIsIsotropic(), DMPlexMetricRestrictAnisotropyFirst() 13793520041SJoe Wallwork @*/ 13893520041SJoe Wallwork PetscErrorCode DMPlexMetricIsUniform(DM dm, PetscBool *uniform) 13993520041SJoe Wallwork { 14093520041SJoe Wallwork DM_Plex *plex = (DM_Plex *) dm->data; 14193520041SJoe Wallwork 14293520041SJoe Wallwork PetscFunctionBegin; 143*bc00d7afSJoe Wallwork if (!plex->metricCtx) PetscCall(DMPlexMetricSetFromOptions(dm)); 14493520041SJoe Wallwork *uniform = plex->metricCtx->uniform; 14593520041SJoe Wallwork PetscFunctionReturn(0); 14693520041SJoe Wallwork } 14793520041SJoe Wallwork 14893520041SJoe Wallwork /*@ 14931b70465SJoe Wallwork DMPlexMetricSetRestrictAnisotropyFirst - Record whether anisotropy should be restricted before normalization 15031b70465SJoe Wallwork 15131b70465SJoe Wallwork Input parameters: 15231b70465SJoe Wallwork + dm - The DM 15331b70465SJoe Wallwork - restrictAnisotropyFirst - Should anisotropy be normalized first? 15431b70465SJoe Wallwork 15531b70465SJoe Wallwork Level: beginner 15631b70465SJoe Wallwork 15731b70465SJoe Wallwork .seealso: DMPlexMetricSetIsotropic(), DMPlexMetricRestrictAnisotropyFirst() 158cb7bfe8cSJoe Wallwork @*/ 15931b70465SJoe Wallwork PetscErrorCode DMPlexMetricSetRestrictAnisotropyFirst(DM dm, PetscBool restrictAnisotropyFirst) 16031b70465SJoe Wallwork { 16131b70465SJoe Wallwork DM_Plex *plex = (DM_Plex *) dm->data; 16231b70465SJoe Wallwork 16331b70465SJoe Wallwork PetscFunctionBegin; 164*bc00d7afSJoe Wallwork if (!plex->metricCtx) PetscCall(DMPlexMetricSetFromOptions(dm)); 16531b70465SJoe Wallwork plex->metricCtx->restrictAnisotropyFirst = restrictAnisotropyFirst; 16631b70465SJoe Wallwork PetscFunctionReturn(0); 16731b70465SJoe Wallwork } 16831b70465SJoe Wallwork 169cb7bfe8cSJoe Wallwork /*@ 17031b70465SJoe Wallwork DMPlexMetricRestrictAnisotropyFirst - Is anisotropy restricted before normalization or after? 17131b70465SJoe Wallwork 17231b70465SJoe Wallwork Input parameters: 17331b70465SJoe Wallwork . dm - The DM 17431b70465SJoe Wallwork 17531b70465SJoe Wallwork Output parameters: 17631b70465SJoe Wallwork . restrictAnisotropyFirst - Is anisotropy be normalized first? 17731b70465SJoe Wallwork 17831b70465SJoe Wallwork Level: beginner 17931b70465SJoe Wallwork 18031b70465SJoe Wallwork .seealso: DMPlexMetricIsIsotropic(), DMPlexMetricSetRestrictAnisotropyFirst() 181cb7bfe8cSJoe Wallwork @*/ 18231b70465SJoe Wallwork PetscErrorCode DMPlexMetricRestrictAnisotropyFirst(DM dm, PetscBool *restrictAnisotropyFirst) 18331b70465SJoe Wallwork { 18431b70465SJoe Wallwork DM_Plex *plex = (DM_Plex *) dm->data; 18531b70465SJoe Wallwork 18631b70465SJoe Wallwork PetscFunctionBegin; 187*bc00d7afSJoe Wallwork if (!plex->metricCtx) PetscCall(DMPlexMetricSetFromOptions(dm)); 18831b70465SJoe Wallwork *restrictAnisotropyFirst = plex->metricCtx->restrictAnisotropyFirst; 18931b70465SJoe Wallwork PetscFunctionReturn(0); 19031b70465SJoe Wallwork } 19131b70465SJoe Wallwork 192cb7bfe8cSJoe Wallwork /*@ 193cc2eee55SJoe Wallwork DMPlexMetricSetNoInsertion - Should node insertion and deletion be turned off? 194cc2eee55SJoe Wallwork 195cc2eee55SJoe Wallwork Input parameters: 196cc2eee55SJoe Wallwork + dm - The DM 197cc2eee55SJoe Wallwork - noInsert - Should node insertion and deletion be turned off? 198cc2eee55SJoe Wallwork 199cc2eee55SJoe Wallwork Level: beginner 200cc2eee55SJoe Wallwork 201cb7bfe8cSJoe Wallwork Notes: 202cb7bfe8cSJoe Wallwork This is only used by Mmg and ParMmg (not Pragmatic). 203cb7bfe8cSJoe Wallwork 20476f360caSJoe Wallwork .seealso: DMPlexMetricNoInsertion(), DMPlexMetricSetNoSwapping(), DMPlexMetricSetNoMovement(), DMPlexMetricSetNoSurf() 205cb7bfe8cSJoe Wallwork @*/ 206cc2eee55SJoe Wallwork PetscErrorCode DMPlexMetricSetNoInsertion(DM dm, PetscBool noInsert) 207cc2eee55SJoe Wallwork { 208cc2eee55SJoe Wallwork DM_Plex *plex = (DM_Plex *) dm->data; 209cc2eee55SJoe Wallwork 210cc2eee55SJoe Wallwork PetscFunctionBegin; 211*bc00d7afSJoe Wallwork if (!plex->metricCtx) PetscCall(DMPlexMetricSetFromOptions(dm)); 212cc2eee55SJoe Wallwork plex->metricCtx->noInsert = noInsert; 213cc2eee55SJoe Wallwork PetscFunctionReturn(0); 214cc2eee55SJoe Wallwork } 215cc2eee55SJoe Wallwork 216cb7bfe8cSJoe Wallwork /*@ 217cc2eee55SJoe Wallwork DMPlexMetricNoInsertion - Are node insertion and deletion turned off? 218cc2eee55SJoe Wallwork 219cc2eee55SJoe Wallwork Input parameters: 220cc2eee55SJoe Wallwork . dm - The DM 221cc2eee55SJoe Wallwork 222cc2eee55SJoe Wallwork Output parameters: 223cc2eee55SJoe Wallwork . noInsert - Are node insertion and deletion turned off? 224cc2eee55SJoe Wallwork 225cc2eee55SJoe Wallwork Level: beginner 226cc2eee55SJoe Wallwork 227cb7bfe8cSJoe Wallwork Notes: 228cb7bfe8cSJoe Wallwork This is only used by Mmg and ParMmg (not Pragmatic). 229cb7bfe8cSJoe Wallwork 23076f360caSJoe Wallwork .seealso: DMPlexMetricSetNoInsertion(), DMPlexMetricNoSwapping(), DMPlexMetricNoMovement(), DMPlexMetricNoSurf() 231cb7bfe8cSJoe Wallwork @*/ 232cc2eee55SJoe Wallwork PetscErrorCode DMPlexMetricNoInsertion(DM dm, PetscBool *noInsert) 233cc2eee55SJoe Wallwork { 234cc2eee55SJoe Wallwork DM_Plex *plex = (DM_Plex *) dm->data; 235cc2eee55SJoe Wallwork 236cc2eee55SJoe Wallwork PetscFunctionBegin; 237*bc00d7afSJoe Wallwork if (!plex->metricCtx) PetscCall(DMPlexMetricSetFromOptions(dm)); 238cc2eee55SJoe Wallwork *noInsert = plex->metricCtx->noInsert; 239cc2eee55SJoe Wallwork PetscFunctionReturn(0); 240cc2eee55SJoe Wallwork } 241cc2eee55SJoe Wallwork 242cb7bfe8cSJoe Wallwork /*@ 243cc2eee55SJoe Wallwork DMPlexMetricSetNoSwapping - Should facet swapping be turned off? 244cc2eee55SJoe Wallwork 245cc2eee55SJoe Wallwork Input parameters: 246cc2eee55SJoe Wallwork + dm - The DM 247cc2eee55SJoe Wallwork - noSwap - Should facet swapping be turned off? 248cc2eee55SJoe Wallwork 249cc2eee55SJoe Wallwork Level: beginner 250cc2eee55SJoe Wallwork 251cb7bfe8cSJoe Wallwork Notes: 252cb7bfe8cSJoe Wallwork This is only used by Mmg and ParMmg (not Pragmatic). 253cb7bfe8cSJoe Wallwork 25476f360caSJoe Wallwork .seealso: DMPlexMetricNoSwapping(), DMPlexMetricSetNoInsertion(), DMPlexMetricSetNoMovement(), DMPlexMetricSetNoSurf() 255cb7bfe8cSJoe Wallwork @*/ 256cc2eee55SJoe Wallwork PetscErrorCode DMPlexMetricSetNoSwapping(DM dm, PetscBool noSwap) 257cc2eee55SJoe Wallwork { 258cc2eee55SJoe Wallwork DM_Plex *plex = (DM_Plex *) dm->data; 259cc2eee55SJoe Wallwork 260cc2eee55SJoe Wallwork PetscFunctionBegin; 261*bc00d7afSJoe Wallwork if (!plex->metricCtx) PetscCall(DMPlexMetricSetFromOptions(dm)); 262cc2eee55SJoe Wallwork plex->metricCtx->noSwap = noSwap; 263cc2eee55SJoe Wallwork PetscFunctionReturn(0); 264cc2eee55SJoe Wallwork } 265cc2eee55SJoe Wallwork 266cb7bfe8cSJoe Wallwork /*@ 267cc2eee55SJoe Wallwork DMPlexMetricNoSwapping - Is facet swapping turned off? 268cc2eee55SJoe Wallwork 269cc2eee55SJoe Wallwork Input parameters: 270cc2eee55SJoe Wallwork . dm - The DM 271cc2eee55SJoe Wallwork 272cc2eee55SJoe Wallwork Output parameters: 273cc2eee55SJoe Wallwork . noSwap - Is facet swapping turned off? 274cc2eee55SJoe Wallwork 275cc2eee55SJoe Wallwork Level: beginner 276cc2eee55SJoe Wallwork 277cb7bfe8cSJoe Wallwork Notes: 278cb7bfe8cSJoe Wallwork This is only used by Mmg and ParMmg (not Pragmatic). 279cb7bfe8cSJoe Wallwork 28076f360caSJoe Wallwork .seealso: DMPlexMetricSetNoSwapping(), DMPlexMetricNoInsertion(), DMPlexMetricNoMovement(), DMPlexMetricNoSurf() 281cb7bfe8cSJoe Wallwork @*/ 282cc2eee55SJoe Wallwork PetscErrorCode DMPlexMetricNoSwapping(DM dm, PetscBool *noSwap) 283cc2eee55SJoe Wallwork { 284cc2eee55SJoe Wallwork DM_Plex *plex = (DM_Plex *) dm->data; 285cc2eee55SJoe Wallwork 286cc2eee55SJoe Wallwork PetscFunctionBegin; 287*bc00d7afSJoe Wallwork if (!plex->metricCtx) PetscCall(DMPlexMetricSetFromOptions(dm)); 288cc2eee55SJoe Wallwork *noSwap = plex->metricCtx->noSwap; 289cc2eee55SJoe Wallwork PetscFunctionReturn(0); 290cc2eee55SJoe Wallwork } 291cc2eee55SJoe Wallwork 292cb7bfe8cSJoe Wallwork /*@ 293cc2eee55SJoe Wallwork DMPlexMetricSetNoMovement - Should node movement be turned off? 294cc2eee55SJoe Wallwork 295cc2eee55SJoe Wallwork Input parameters: 296cc2eee55SJoe Wallwork + dm - The DM 297cc2eee55SJoe Wallwork - noMove - Should node movement be turned off? 298cc2eee55SJoe Wallwork 299cc2eee55SJoe Wallwork Level: beginner 300cc2eee55SJoe Wallwork 301cb7bfe8cSJoe Wallwork Notes: 302cb7bfe8cSJoe Wallwork This is only used by Mmg and ParMmg (not Pragmatic). 303cb7bfe8cSJoe Wallwork 30476f360caSJoe Wallwork .seealso: DMPlexMetricNoMovement(), DMPlexMetricSetNoInsertion(), DMPlexMetricSetNoSwapping(), DMPlexMetricSetNoSurf() 305cb7bfe8cSJoe Wallwork @*/ 306cc2eee55SJoe Wallwork PetscErrorCode DMPlexMetricSetNoMovement(DM dm, PetscBool noMove) 307cc2eee55SJoe Wallwork { 308cc2eee55SJoe Wallwork DM_Plex *plex = (DM_Plex *) dm->data; 309cc2eee55SJoe Wallwork 310cc2eee55SJoe Wallwork PetscFunctionBegin; 311*bc00d7afSJoe Wallwork if (!plex->metricCtx) PetscCall(DMPlexMetricSetFromOptions(dm)); 312cc2eee55SJoe Wallwork plex->metricCtx->noMove = noMove; 313cc2eee55SJoe Wallwork PetscFunctionReturn(0); 314cc2eee55SJoe Wallwork } 315cc2eee55SJoe Wallwork 316cb7bfe8cSJoe Wallwork /*@ 317cc2eee55SJoe Wallwork DMPlexMetricNoMovement - Is node movement turned off? 318cc2eee55SJoe Wallwork 319cc2eee55SJoe Wallwork Input parameters: 320cc2eee55SJoe Wallwork . dm - The DM 321cc2eee55SJoe Wallwork 322cc2eee55SJoe Wallwork Output parameters: 323cc2eee55SJoe Wallwork . noMove - Is node movement turned off? 324cc2eee55SJoe Wallwork 325cc2eee55SJoe Wallwork Level: beginner 326cc2eee55SJoe Wallwork 327cb7bfe8cSJoe Wallwork Notes: 328cb7bfe8cSJoe Wallwork This is only used by Mmg and ParMmg (not Pragmatic). 329cb7bfe8cSJoe Wallwork 33076f360caSJoe Wallwork .seealso: DMPlexMetricSetNoMovement(), DMPlexMetricNoInsertion(), DMPlexMetricNoSwapping(), DMPlexMetricNoSurf() 331cb7bfe8cSJoe Wallwork @*/ 332cc2eee55SJoe Wallwork PetscErrorCode DMPlexMetricNoMovement(DM dm, PetscBool *noMove) 333cc2eee55SJoe Wallwork { 334cc2eee55SJoe Wallwork DM_Plex *plex = (DM_Plex *) dm->data; 335cc2eee55SJoe Wallwork 336cc2eee55SJoe Wallwork PetscFunctionBegin; 337*bc00d7afSJoe Wallwork if (!plex->metricCtx) PetscCall(DMPlexMetricSetFromOptions(dm)); 338cc2eee55SJoe Wallwork *noMove = plex->metricCtx->noMove; 339cc2eee55SJoe Wallwork PetscFunctionReturn(0); 340cc2eee55SJoe Wallwork } 341cc2eee55SJoe Wallwork 342cb7bfe8cSJoe Wallwork /*@ 34376f360caSJoe Wallwork DMPlexMetricSetNoSurf - Should surface modification be turned off? 34476f360caSJoe Wallwork 34576f360caSJoe Wallwork Input parameters: 34676f360caSJoe Wallwork + dm - The DM 34776f360caSJoe Wallwork - noSurf - Should surface modification be turned off? 34876f360caSJoe Wallwork 34976f360caSJoe Wallwork Level: beginner 35076f360caSJoe Wallwork 35176f360caSJoe Wallwork Notes: 35276f360caSJoe Wallwork This is only used by Mmg and ParMmg (not Pragmatic). 35376f360caSJoe Wallwork 35476f360caSJoe Wallwork .seealso: DMPlexMetricNoSurf(), DMPlexMetricSetNoMovement(), DMPlexMetricSetNoInsertion(), DMPlexMetricSetNoSwapping() 35576f360caSJoe Wallwork @*/ 35676f360caSJoe Wallwork PetscErrorCode DMPlexMetricSetNoSurf(DM dm, PetscBool noSurf) 35776f360caSJoe Wallwork { 35876f360caSJoe Wallwork DM_Plex *plex = (DM_Plex *) dm->data; 35976f360caSJoe Wallwork 36076f360caSJoe Wallwork PetscFunctionBegin; 361*bc00d7afSJoe Wallwork if (!plex->metricCtx) PetscCall(DMPlexMetricSetFromOptions(dm)); 36276f360caSJoe Wallwork plex->metricCtx->noSurf = noSurf; 36376f360caSJoe Wallwork PetscFunctionReturn(0); 36476f360caSJoe Wallwork } 36576f360caSJoe Wallwork 36676f360caSJoe Wallwork /*@ 36776f360caSJoe Wallwork DMPlexMetricNoSurf - Is surface modification turned off? 36876f360caSJoe Wallwork 36976f360caSJoe Wallwork Input parameters: 37076f360caSJoe Wallwork . dm - The DM 37176f360caSJoe Wallwork 37276f360caSJoe Wallwork Output parameters: 37376f360caSJoe Wallwork . noSurf - Is surface modification turned off? 37476f360caSJoe Wallwork 37576f360caSJoe Wallwork Level: beginner 37676f360caSJoe Wallwork 37776f360caSJoe Wallwork Notes: 37876f360caSJoe Wallwork This is only used by Mmg and ParMmg (not Pragmatic). 37976f360caSJoe Wallwork 38076f360caSJoe Wallwork .seealso: DMPlexMetricSetNoSurf(), DMPlexMetricNoMovement(), DMPlexMetricNoInsertion(), DMPlexMetricNoSwapping() 38176f360caSJoe Wallwork @*/ 38276f360caSJoe Wallwork PetscErrorCode DMPlexMetricNoSurf(DM dm, PetscBool *noSurf) 38376f360caSJoe Wallwork { 38476f360caSJoe Wallwork DM_Plex *plex = (DM_Plex *) dm->data; 38576f360caSJoe Wallwork 38676f360caSJoe Wallwork PetscFunctionBegin; 387*bc00d7afSJoe Wallwork if (!plex->metricCtx) PetscCall(DMPlexMetricSetFromOptions(dm)); 38876f360caSJoe Wallwork *noSurf = plex->metricCtx->noSurf; 38976f360caSJoe Wallwork PetscFunctionReturn(0); 39076f360caSJoe Wallwork } 39176f360caSJoe Wallwork 39276f360caSJoe Wallwork /*@ 39331b70465SJoe Wallwork DMPlexMetricSetMinimumMagnitude - Set the minimum tolerated metric magnitude 39431b70465SJoe Wallwork 39531b70465SJoe Wallwork Input parameters: 39631b70465SJoe Wallwork + dm - The DM 39731b70465SJoe Wallwork - h_min - The minimum tolerated metric magnitude 39831b70465SJoe Wallwork 39931b70465SJoe Wallwork Level: beginner 40031b70465SJoe Wallwork 40131b70465SJoe Wallwork .seealso: DMPlexMetricGetMinimumMagnitude(), DMPlexMetricSetMaximumMagnitude() 402cb7bfe8cSJoe Wallwork @*/ 40331b70465SJoe Wallwork PetscErrorCode DMPlexMetricSetMinimumMagnitude(DM dm, PetscReal h_min) 40431b70465SJoe Wallwork { 40531b70465SJoe Wallwork DM_Plex *plex = (DM_Plex *) dm->data; 40631b70465SJoe Wallwork 40731b70465SJoe Wallwork PetscFunctionBegin; 408*bc00d7afSJoe Wallwork if (!plex->metricCtx) PetscCall(DMPlexMetricSetFromOptions(dm)); 409*bc00d7afSJoe Wallwork PetscCheck(h_min > 0.0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Metric magnitudes must be in (0, inf)"); 41031b70465SJoe Wallwork plex->metricCtx->h_min = h_min; 41131b70465SJoe Wallwork PetscFunctionReturn(0); 41231b70465SJoe Wallwork } 41331b70465SJoe Wallwork 414cb7bfe8cSJoe Wallwork /*@ 41531b70465SJoe Wallwork DMPlexMetricGetMinimumMagnitude - Get the minimum tolerated metric magnitude 41631b70465SJoe Wallwork 41731b70465SJoe Wallwork Input parameters: 41831b70465SJoe Wallwork . dm - The DM 41931b70465SJoe Wallwork 420cc2eee55SJoe Wallwork Output parameters: 42131b70465SJoe Wallwork . h_min - The minimum tolerated metric magnitude 42231b70465SJoe Wallwork 42331b70465SJoe Wallwork Level: beginner 42431b70465SJoe Wallwork 42531b70465SJoe Wallwork .seealso: DMPlexMetricSetMinimumMagnitude(), DMPlexMetricGetMaximumMagnitude() 426cb7bfe8cSJoe Wallwork @*/ 42731b70465SJoe Wallwork PetscErrorCode DMPlexMetricGetMinimumMagnitude(DM dm, PetscReal *h_min) 42831b70465SJoe Wallwork { 42931b70465SJoe Wallwork DM_Plex *plex = (DM_Plex *) dm->data; 43031b70465SJoe Wallwork 43131b70465SJoe Wallwork PetscFunctionBegin; 432*bc00d7afSJoe Wallwork if (!plex->metricCtx) PetscCall(DMPlexMetricSetFromOptions(dm)); 43331b70465SJoe Wallwork *h_min = plex->metricCtx->h_min; 43431b70465SJoe Wallwork PetscFunctionReturn(0); 43531b70465SJoe Wallwork } 43631b70465SJoe Wallwork 437cb7bfe8cSJoe Wallwork /*@ 43831b70465SJoe Wallwork DMPlexMetricSetMaximumMagnitude - Set the maximum tolerated metric magnitude 43931b70465SJoe Wallwork 44031b70465SJoe Wallwork Input parameters: 44131b70465SJoe Wallwork + dm - The DM 44231b70465SJoe Wallwork - h_max - The maximum tolerated metric magnitude 44331b70465SJoe Wallwork 44431b70465SJoe Wallwork Level: beginner 44531b70465SJoe Wallwork 44631b70465SJoe Wallwork .seealso: DMPlexMetricGetMaximumMagnitude(), DMPlexMetricSetMinimumMagnitude() 447cb7bfe8cSJoe Wallwork @*/ 44831b70465SJoe Wallwork PetscErrorCode DMPlexMetricSetMaximumMagnitude(DM dm, PetscReal h_max) 44931b70465SJoe Wallwork { 45031b70465SJoe Wallwork DM_Plex *plex = (DM_Plex *) dm->data; 45131b70465SJoe Wallwork 45231b70465SJoe Wallwork PetscFunctionBegin; 453*bc00d7afSJoe Wallwork if (!plex->metricCtx) PetscCall(DMPlexMetricSetFromOptions(dm)); 454*bc00d7afSJoe Wallwork PetscCheck(h_max > 0.0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Metric magnitudes must be in (0, inf)"); 45531b70465SJoe Wallwork plex->metricCtx->h_max = h_max; 45631b70465SJoe Wallwork PetscFunctionReturn(0); 45731b70465SJoe Wallwork } 45831b70465SJoe Wallwork 459cb7bfe8cSJoe Wallwork /*@ 46031b70465SJoe Wallwork DMPlexMetricGetMaximumMagnitude - Get the maximum tolerated metric magnitude 46131b70465SJoe Wallwork 46231b70465SJoe Wallwork Input parameters: 46331b70465SJoe Wallwork . dm - The DM 46431b70465SJoe Wallwork 465cc2eee55SJoe Wallwork Output parameters: 46631b70465SJoe Wallwork . h_max - The maximum tolerated metric magnitude 46731b70465SJoe Wallwork 46831b70465SJoe Wallwork Level: beginner 46931b70465SJoe Wallwork 47031b70465SJoe Wallwork .seealso: DMPlexMetricSetMaximumMagnitude(), DMPlexMetricGetMinimumMagnitude() 471cb7bfe8cSJoe Wallwork @*/ 47231b70465SJoe Wallwork PetscErrorCode DMPlexMetricGetMaximumMagnitude(DM dm, PetscReal *h_max) 47331b70465SJoe Wallwork { 47431b70465SJoe Wallwork DM_Plex *plex = (DM_Plex *) dm->data; 47531b70465SJoe Wallwork 47631b70465SJoe Wallwork PetscFunctionBegin; 477*bc00d7afSJoe Wallwork if (!plex->metricCtx) PetscCall(DMPlexMetricSetFromOptions(dm)); 47831b70465SJoe Wallwork *h_max = plex->metricCtx->h_max; 47931b70465SJoe Wallwork PetscFunctionReturn(0); 48031b70465SJoe Wallwork } 48131b70465SJoe Wallwork 482cb7bfe8cSJoe Wallwork /*@ 48331b70465SJoe Wallwork DMPlexMetricSetMaximumAnisotropy - Set the maximum tolerated metric anisotropy 48431b70465SJoe Wallwork 48531b70465SJoe Wallwork Input parameters: 48631b70465SJoe Wallwork + dm - The DM 48731b70465SJoe Wallwork - a_max - The maximum tolerated metric anisotropy 48831b70465SJoe Wallwork 48931b70465SJoe Wallwork Level: beginner 49031b70465SJoe Wallwork 49131b70465SJoe Wallwork Note: If the value zero is given then anisotropy will not be restricted. Otherwise, it should be at least one. 49231b70465SJoe Wallwork 49331b70465SJoe Wallwork .seealso: DMPlexMetricGetMaximumAnisotropy(), DMPlexMetricSetMaximumMagnitude() 494cb7bfe8cSJoe Wallwork @*/ 49531b70465SJoe Wallwork PetscErrorCode DMPlexMetricSetMaximumAnisotropy(DM dm, PetscReal a_max) 49631b70465SJoe Wallwork { 49731b70465SJoe Wallwork DM_Plex *plex = (DM_Plex *) dm->data; 49831b70465SJoe Wallwork 49931b70465SJoe Wallwork PetscFunctionBegin; 500*bc00d7afSJoe Wallwork if (!plex->metricCtx) PetscCall(DMPlexMetricSetFromOptions(dm)); 501*bc00d7afSJoe Wallwork PetscCheck(a_max >= 1.0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Anisotropy must be in [1, inf)"); 50231b70465SJoe Wallwork plex->metricCtx->a_max = a_max; 50331b70465SJoe Wallwork PetscFunctionReturn(0); 50431b70465SJoe Wallwork } 50531b70465SJoe Wallwork 506cb7bfe8cSJoe Wallwork /*@ 50731b70465SJoe Wallwork DMPlexMetricGetMaximumAnisotropy - Get the maximum tolerated metric anisotropy 50831b70465SJoe Wallwork 50931b70465SJoe Wallwork Input parameters: 51031b70465SJoe Wallwork . dm - The DM 51131b70465SJoe Wallwork 512cc2eee55SJoe Wallwork Output parameters: 51331b70465SJoe Wallwork . a_max - The maximum tolerated metric anisotropy 51431b70465SJoe Wallwork 51531b70465SJoe Wallwork Level: beginner 51631b70465SJoe Wallwork 51731b70465SJoe Wallwork .seealso: DMPlexMetricSetMaximumAnisotropy(), DMPlexMetricGetMaximumMagnitude() 518cb7bfe8cSJoe Wallwork @*/ 51931b70465SJoe Wallwork PetscErrorCode DMPlexMetricGetMaximumAnisotropy(DM dm, PetscReal *a_max) 52031b70465SJoe Wallwork { 52131b70465SJoe Wallwork DM_Plex *plex = (DM_Plex *) dm->data; 52231b70465SJoe Wallwork 52331b70465SJoe Wallwork PetscFunctionBegin; 524*bc00d7afSJoe Wallwork if (!plex->metricCtx) PetscCall(DMPlexMetricSetFromOptions(dm)); 52531b70465SJoe Wallwork *a_max = plex->metricCtx->a_max; 52631b70465SJoe Wallwork PetscFunctionReturn(0); 52731b70465SJoe Wallwork } 52831b70465SJoe Wallwork 529cb7bfe8cSJoe Wallwork /*@ 53031b70465SJoe Wallwork DMPlexMetricSetTargetComplexity - Set the target metric complexity 53131b70465SJoe Wallwork 53231b70465SJoe Wallwork Input parameters: 53331b70465SJoe Wallwork + dm - The DM 53431b70465SJoe Wallwork - targetComplexity - The target metric complexity 53531b70465SJoe Wallwork 53631b70465SJoe Wallwork Level: beginner 53731b70465SJoe Wallwork 53831b70465SJoe Wallwork .seealso: DMPlexMetricGetTargetComplexity(), DMPlexMetricSetNormalizationOrder() 539cb7bfe8cSJoe Wallwork @*/ 54031b70465SJoe Wallwork PetscErrorCode DMPlexMetricSetTargetComplexity(DM dm, PetscReal targetComplexity) 54131b70465SJoe Wallwork { 54231b70465SJoe Wallwork DM_Plex *plex = (DM_Plex *) dm->data; 54331b70465SJoe Wallwork 54431b70465SJoe Wallwork PetscFunctionBegin; 545*bc00d7afSJoe Wallwork if (!plex->metricCtx) PetscCall(DMPlexMetricSetFromOptions(dm)); 546*bc00d7afSJoe Wallwork PetscCheck(targetComplexity > 0.0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Metric complexity must be in (0, inf)"); 54731b70465SJoe Wallwork plex->metricCtx->targetComplexity = targetComplexity; 54831b70465SJoe Wallwork PetscFunctionReturn(0); 54931b70465SJoe Wallwork } 55031b70465SJoe Wallwork 551cb7bfe8cSJoe Wallwork /*@ 55231b70465SJoe Wallwork DMPlexMetricGetTargetComplexity - Get the target metric complexity 55331b70465SJoe Wallwork 55431b70465SJoe Wallwork Input parameters: 55531b70465SJoe Wallwork . dm - The DM 55631b70465SJoe Wallwork 557cc2eee55SJoe Wallwork Output parameters: 55831b70465SJoe Wallwork . targetComplexity - The target metric complexity 55931b70465SJoe Wallwork 56031b70465SJoe Wallwork Level: beginner 56131b70465SJoe Wallwork 56231b70465SJoe Wallwork .seealso: DMPlexMetricSetTargetComplexity(), DMPlexMetricGetNormalizationOrder() 563cb7bfe8cSJoe Wallwork @*/ 56431b70465SJoe Wallwork PetscErrorCode DMPlexMetricGetTargetComplexity(DM dm, PetscReal *targetComplexity) 56531b70465SJoe Wallwork { 56631b70465SJoe Wallwork DM_Plex *plex = (DM_Plex *) dm->data; 56731b70465SJoe Wallwork 56831b70465SJoe Wallwork PetscFunctionBegin; 569*bc00d7afSJoe Wallwork if (!plex->metricCtx) PetscCall(DMPlexMetricSetFromOptions(dm)); 57031b70465SJoe Wallwork *targetComplexity = plex->metricCtx->targetComplexity; 57131b70465SJoe Wallwork PetscFunctionReturn(0); 57231b70465SJoe Wallwork } 57331b70465SJoe Wallwork 574cb7bfe8cSJoe Wallwork /*@ 57531b70465SJoe Wallwork DMPlexMetricSetNormalizationOrder - Set the order p for L-p normalization 57631b70465SJoe Wallwork 57731b70465SJoe Wallwork Input parameters: 57831b70465SJoe Wallwork + dm - The DM 57931b70465SJoe Wallwork - p - The normalization order 58031b70465SJoe Wallwork 58131b70465SJoe Wallwork Level: beginner 58231b70465SJoe Wallwork 58331b70465SJoe Wallwork .seealso: DMPlexMetricGetNormalizationOrder(), DMPlexMetricSetTargetComplexity() 584cb7bfe8cSJoe Wallwork @*/ 58531b70465SJoe Wallwork PetscErrorCode DMPlexMetricSetNormalizationOrder(DM dm, PetscReal p) 58631b70465SJoe Wallwork { 58731b70465SJoe Wallwork DM_Plex *plex = (DM_Plex *) dm->data; 58831b70465SJoe Wallwork 58931b70465SJoe Wallwork PetscFunctionBegin; 590*bc00d7afSJoe Wallwork if (!plex->metricCtx) PetscCall(DMPlexMetricSetFromOptions(dm)); 591*bc00d7afSJoe Wallwork PetscCheck(p >= 1.0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Normalization order must be in [1, inf)"); 59231b70465SJoe Wallwork plex->metricCtx->p = p; 59331b70465SJoe Wallwork PetscFunctionReturn(0); 59431b70465SJoe Wallwork } 59531b70465SJoe Wallwork 596cb7bfe8cSJoe Wallwork /*@ 59731b70465SJoe Wallwork DMPlexMetricGetNormalizationOrder - Get the order p for L-p normalization 59831b70465SJoe Wallwork 59931b70465SJoe Wallwork Input parameters: 60031b70465SJoe Wallwork . dm - The DM 60131b70465SJoe Wallwork 602cc2eee55SJoe Wallwork Output parameters: 60331b70465SJoe Wallwork . p - The normalization order 60431b70465SJoe Wallwork 60531b70465SJoe Wallwork Level: beginner 60631b70465SJoe Wallwork 60731b70465SJoe Wallwork .seealso: DMPlexMetricSetNormalizationOrder(), DMPlexMetricGetTargetComplexity() 608cb7bfe8cSJoe Wallwork @*/ 60931b70465SJoe Wallwork PetscErrorCode DMPlexMetricGetNormalizationOrder(DM dm, PetscReal *p) 61031b70465SJoe Wallwork { 61131b70465SJoe Wallwork DM_Plex *plex = (DM_Plex *) dm->data; 61231b70465SJoe Wallwork 61331b70465SJoe Wallwork PetscFunctionBegin; 614*bc00d7afSJoe Wallwork if (!plex->metricCtx) PetscCall(DMPlexMetricSetFromOptions(dm)); 61531b70465SJoe Wallwork *p = plex->metricCtx->p; 61631b70465SJoe Wallwork PetscFunctionReturn(0); 61731b70465SJoe Wallwork } 61831b70465SJoe Wallwork 619cb7bfe8cSJoe Wallwork /*@ 620cc2eee55SJoe Wallwork DMPlexMetricSetGradationFactor - Set the metric gradation factor 621cc2eee55SJoe Wallwork 622cc2eee55SJoe Wallwork Input parameters: 623cc2eee55SJoe Wallwork + dm - The DM 624cc2eee55SJoe Wallwork - beta - The metric gradation factor 625cc2eee55SJoe Wallwork 626cc2eee55SJoe Wallwork Level: beginner 627cc2eee55SJoe Wallwork 628cc2eee55SJoe Wallwork Notes: 629cc2eee55SJoe Wallwork 630cc2eee55SJoe Wallwork The gradation factor is the maximum tolerated length ratio between adjacent edges. 631cc2eee55SJoe Wallwork 632cc2eee55SJoe Wallwork Turn off gradation by passing the value -1. Otherwise, pass a positive value. 633cc2eee55SJoe Wallwork 634cb7bfe8cSJoe Wallwork This is only used by Mmg and ParMmg (not Pragmatic). 635cb7bfe8cSJoe Wallwork 636ae8b063eSJoe Wallwork .seealso: DMPlexMetricGetGradationFactor(), DMPlexMetricSetHausdorffNumber() 637cb7bfe8cSJoe Wallwork @*/ 638cc2eee55SJoe Wallwork PetscErrorCode DMPlexMetricSetGradationFactor(DM dm, PetscReal beta) 639cc2eee55SJoe Wallwork { 640cc2eee55SJoe Wallwork DM_Plex *plex = (DM_Plex *) dm->data; 641cc2eee55SJoe Wallwork 642cc2eee55SJoe Wallwork PetscFunctionBegin; 643*bc00d7afSJoe Wallwork if (!plex->metricCtx) PetscCall(DMPlexMetricSetFromOptions(dm)); 644*bc00d7afSJoe Wallwork PetscCheck(beta > 0.0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Metric gradation factor must be in (0, inf)"); 645cc2eee55SJoe Wallwork plex->metricCtx->gradationFactor = beta; 646cc2eee55SJoe Wallwork PetscFunctionReturn(0); 647cc2eee55SJoe Wallwork } 648cc2eee55SJoe Wallwork 649cb7bfe8cSJoe Wallwork /*@ 650cc2eee55SJoe Wallwork DMPlexMetricGetGradationFactor - Get the metric gradation factor 651cc2eee55SJoe Wallwork 652cc2eee55SJoe Wallwork Input parameters: 653cc2eee55SJoe Wallwork . dm - The DM 654cc2eee55SJoe Wallwork 655cc2eee55SJoe Wallwork Output parameters: 656cc2eee55SJoe Wallwork . beta - The metric gradation factor 657cc2eee55SJoe Wallwork 658cc2eee55SJoe Wallwork Level: beginner 659cc2eee55SJoe Wallwork 660cb7bfe8cSJoe Wallwork Notes: 661cb7bfe8cSJoe Wallwork 662cb7bfe8cSJoe Wallwork The gradation factor is the maximum tolerated length ratio between adjacent edges. 663cb7bfe8cSJoe Wallwork 664cb7bfe8cSJoe Wallwork The value -1 implies that gradation is turned off. 665cb7bfe8cSJoe Wallwork 666cb7bfe8cSJoe Wallwork This is only used by Mmg and ParMmg (not Pragmatic). 667cc2eee55SJoe Wallwork 668ae8b063eSJoe Wallwork .seealso: DMPlexMetricSetGradationFactor(), DMPlexMetricGetHausdorffNumber() 669cb7bfe8cSJoe Wallwork @*/ 670cc2eee55SJoe Wallwork PetscErrorCode DMPlexMetricGetGradationFactor(DM dm, PetscReal *beta) 671cc2eee55SJoe Wallwork { 672cc2eee55SJoe Wallwork DM_Plex *plex = (DM_Plex *) dm->data; 673cc2eee55SJoe Wallwork 674cc2eee55SJoe Wallwork PetscFunctionBegin; 675*bc00d7afSJoe Wallwork if (!plex->metricCtx) PetscCall(DMPlexMetricSetFromOptions(dm)); 676cc2eee55SJoe Wallwork *beta = plex->metricCtx->gradationFactor; 677cc2eee55SJoe Wallwork PetscFunctionReturn(0); 678cc2eee55SJoe Wallwork } 679cc2eee55SJoe Wallwork 680cb7bfe8cSJoe Wallwork /*@ 681ae8b063eSJoe Wallwork DMPlexMetricSetHausdorffNumber - Set the metric Hausdorff number 682ae8b063eSJoe Wallwork 683ae8b063eSJoe Wallwork Input parameters: 684ae8b063eSJoe Wallwork + dm - The DM 685ae8b063eSJoe Wallwork - hausd - The metric Hausdorff number 686ae8b063eSJoe Wallwork 687ae8b063eSJoe Wallwork Level: beginner 688ae8b063eSJoe Wallwork 689ae8b063eSJoe Wallwork Notes: 690ae8b063eSJoe Wallwork 691ae8b063eSJoe Wallwork The Hausdorff number imposes the maximal distance between the piecewise linear approximation of the 692ae8b063eSJoe Wallwork boundary and the reconstructed ideal boundary. Thus, a low Hausdorff parameter leads to refine the 693ae8b063eSJoe Wallwork high curvature areas. By default, the Hausdorff value is set to 0.01, which is a suitable value for 694ae8b063eSJoe Wallwork an object of size 1 in each direction. For smaller (resp. larger) objects, you may need to decrease 695ae8b063eSJoe Wallwork (resp. increase) the Hausdorff parameter. (Taken from 696ae8b063eSJoe Wallwork https://www.mmgtools.org/mmg-remesher-try-mmg/mmg-remesher-options/mmg-remesher-option-hausd). 697ae8b063eSJoe Wallwork 698ae8b063eSJoe Wallwork This is only used by Mmg and ParMmg (not Pragmatic). 699ae8b063eSJoe Wallwork 700ae8b063eSJoe Wallwork .seealso: DMPlexMetricSetGradationFactor(), DMPlexMetricGetHausdorffNumber() 701ae8b063eSJoe Wallwork @*/ 702ae8b063eSJoe Wallwork PetscErrorCode DMPlexMetricSetHausdorffNumber(DM dm, PetscReal hausd) 703ae8b063eSJoe Wallwork { 704ae8b063eSJoe Wallwork DM_Plex *plex = (DM_Plex *) dm->data; 705ae8b063eSJoe Wallwork 706ae8b063eSJoe Wallwork PetscFunctionBegin; 707*bc00d7afSJoe Wallwork if (!plex->metricCtx) PetscCall(DMPlexMetricSetFromOptions(dm)); 708*bc00d7afSJoe Wallwork PetscCheck(hausd > 0.0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Metric Hausdorff number must be in (0, inf)"); 709ae8b063eSJoe Wallwork plex->metricCtx->hausdorffNumber = hausd; 710ae8b063eSJoe Wallwork PetscFunctionReturn(0); 711ae8b063eSJoe Wallwork } 712ae8b063eSJoe Wallwork 713ae8b063eSJoe Wallwork /*@ 714ae8b063eSJoe Wallwork DMPlexMetricGetHausdorffNumber - Get the metric Hausdorff number 715ae8b063eSJoe Wallwork 716ae8b063eSJoe Wallwork Input parameters: 717ae8b063eSJoe Wallwork . dm - The DM 718ae8b063eSJoe Wallwork 719ae8b063eSJoe Wallwork Output parameters: 720ae8b063eSJoe Wallwork . hausd - The metric Hausdorff number 721ae8b063eSJoe Wallwork 722ae8b063eSJoe Wallwork Level: beginner 723ae8b063eSJoe Wallwork 724ae8b063eSJoe Wallwork Notes: 725ae8b063eSJoe Wallwork 726ae8b063eSJoe Wallwork The Hausdorff number imposes the maximal distance between the piecewise linear approximation of the 727ae8b063eSJoe Wallwork boundary and the reconstructed ideal boundary. Thus, a low Hausdorff parameter leads to refine the 728ae8b063eSJoe Wallwork high curvature areas. By default, the Hausdorff value is set to 0.01, which is a suitable value for 729ae8b063eSJoe Wallwork an object of size 1 in each direction. For smaller (resp. larger) objects, you may need to decrease 730ae8b063eSJoe Wallwork (resp. increase) the Hausdorff parameter. (Taken from 731ae8b063eSJoe Wallwork https://www.mmgtools.org/mmg-remesher-try-mmg/mmg-remesher-options/mmg-remesher-option-hausd). 732ae8b063eSJoe Wallwork 733ae8b063eSJoe Wallwork This is only used by Mmg and ParMmg (not Pragmatic). 734ae8b063eSJoe Wallwork 735ae8b063eSJoe Wallwork .seealso: DMPlexMetricGetGradationFactor(), DMPlexMetricSetHausdorffNumber() 736ae8b063eSJoe Wallwork @*/ 737ae8b063eSJoe Wallwork PetscErrorCode DMPlexMetricGetHausdorffNumber(DM dm, PetscReal *hausd) 738ae8b063eSJoe Wallwork { 739ae8b063eSJoe Wallwork DM_Plex *plex = (DM_Plex *) dm->data; 740ae8b063eSJoe Wallwork 741ae8b063eSJoe Wallwork PetscFunctionBegin; 742*bc00d7afSJoe Wallwork if (!plex->metricCtx) PetscCall(DMPlexMetricSetFromOptions(dm)); 743ae8b063eSJoe Wallwork *hausd = plex->metricCtx->hausdorffNumber; 744ae8b063eSJoe Wallwork PetscFunctionReturn(0); 745ae8b063eSJoe Wallwork } 746ae8b063eSJoe Wallwork 747ae8b063eSJoe Wallwork /*@ 748cc2eee55SJoe Wallwork DMPlexMetricSetVerbosity - Set the verbosity of the mesh adaptation package 749cc2eee55SJoe Wallwork 750cc2eee55SJoe Wallwork Input parameters: 751cc2eee55SJoe Wallwork + dm - The DM 752cc2eee55SJoe Wallwork - verbosity - The verbosity, where -1 is silent and 10 is maximum 753cc2eee55SJoe Wallwork 754cb7bfe8cSJoe Wallwork Level: beginner 755cb7bfe8cSJoe Wallwork 756cb7bfe8cSJoe Wallwork Notes: 757cb7bfe8cSJoe Wallwork This is only used by Mmg and ParMmg (not Pragmatic). 758cb7bfe8cSJoe Wallwork 759cc2eee55SJoe Wallwork .seealso: DMPlexMetricGetVerbosity(), DMPlexMetricSetNumIterations() 760cb7bfe8cSJoe Wallwork @*/ 761cc2eee55SJoe Wallwork PetscErrorCode DMPlexMetricSetVerbosity(DM dm, PetscInt verbosity) 762cc2eee55SJoe Wallwork { 763cc2eee55SJoe Wallwork DM_Plex *plex = (DM_Plex *) dm->data; 764cc2eee55SJoe Wallwork 765cc2eee55SJoe Wallwork PetscFunctionBegin; 766*bc00d7afSJoe Wallwork if (!plex->metricCtx) PetscCall(DMPlexMetricSetFromOptions(dm)); 767cc2eee55SJoe Wallwork plex->metricCtx->verbosity = verbosity; 768cc2eee55SJoe Wallwork PetscFunctionReturn(0); 769cc2eee55SJoe Wallwork } 770cc2eee55SJoe Wallwork 771cb7bfe8cSJoe Wallwork /*@ 772cc2eee55SJoe Wallwork DMPlexMetricGetVerbosity - Get the verbosity of the mesh adaptation package 773cc2eee55SJoe Wallwork 774cc2eee55SJoe Wallwork Input parameters: 775cc2eee55SJoe Wallwork . dm - The DM 776cc2eee55SJoe Wallwork 777cc2eee55SJoe Wallwork Output parameters: 778cc2eee55SJoe Wallwork . verbosity - The verbosity, where -1 is silent and 10 is maximum 779cc2eee55SJoe Wallwork 780cb7bfe8cSJoe Wallwork Level: beginner 781cb7bfe8cSJoe Wallwork 782cb7bfe8cSJoe Wallwork Notes: 783cb7bfe8cSJoe Wallwork This is only used by Mmg and ParMmg (not Pragmatic). 784cb7bfe8cSJoe Wallwork 785cc2eee55SJoe Wallwork .seealso: DMPlexMetricSetVerbosity(), DMPlexMetricGetNumIterations() 786cb7bfe8cSJoe Wallwork @*/ 787cc2eee55SJoe Wallwork PetscErrorCode DMPlexMetricGetVerbosity(DM dm, PetscInt *verbosity) 788cc2eee55SJoe Wallwork { 789cc2eee55SJoe Wallwork DM_Plex *plex = (DM_Plex *) dm->data; 790cc2eee55SJoe Wallwork 791cc2eee55SJoe Wallwork PetscFunctionBegin; 792*bc00d7afSJoe Wallwork if (!plex->metricCtx) PetscCall(DMPlexMetricSetFromOptions(dm)); 793cc2eee55SJoe Wallwork *verbosity = plex->metricCtx->verbosity; 794cc2eee55SJoe Wallwork PetscFunctionReturn(0); 795cc2eee55SJoe Wallwork } 796cc2eee55SJoe Wallwork 797cb7bfe8cSJoe Wallwork /*@ 798cc2eee55SJoe Wallwork DMPlexMetricSetNumIterations - Set the number of parallel adaptation iterations 799cc2eee55SJoe Wallwork 800cc2eee55SJoe Wallwork Input parameters: 801cc2eee55SJoe Wallwork + dm - The DM 802cc2eee55SJoe Wallwork - numIter - the number of parallel adaptation iterations 803cc2eee55SJoe Wallwork 804cb7bfe8cSJoe Wallwork Level: beginner 805cb7bfe8cSJoe Wallwork 806cb7bfe8cSJoe Wallwork Notes: 807cb7bfe8cSJoe Wallwork This is only used by ParMmg (not Pragmatic or Mmg). 808cc2eee55SJoe Wallwork 809cc2eee55SJoe Wallwork .seealso: DMPlexMetricSetVerbosity(), DMPlexMetricGetNumIterations() 810cb7bfe8cSJoe Wallwork @*/ 811cc2eee55SJoe Wallwork PetscErrorCode DMPlexMetricSetNumIterations(DM dm, PetscInt numIter) 812cc2eee55SJoe Wallwork { 813cc2eee55SJoe Wallwork DM_Plex *plex = (DM_Plex *) dm->data; 814cc2eee55SJoe Wallwork 815cc2eee55SJoe Wallwork PetscFunctionBegin; 816*bc00d7afSJoe Wallwork if (!plex->metricCtx) PetscCall(DMPlexMetricSetFromOptions(dm)); 817cc2eee55SJoe Wallwork plex->metricCtx->numIter = numIter; 818cc2eee55SJoe Wallwork PetscFunctionReturn(0); 819cc2eee55SJoe Wallwork } 820cc2eee55SJoe Wallwork 821cb7bfe8cSJoe Wallwork /*@ 822cc2eee55SJoe Wallwork DMPlexMetricGetNumIterations - Get the number of parallel adaptation iterations 823cc2eee55SJoe Wallwork 824cc2eee55SJoe Wallwork Input parameters: 825cc2eee55SJoe Wallwork . dm - The DM 826cc2eee55SJoe Wallwork 827cc2eee55SJoe Wallwork Output parameters: 828cc2eee55SJoe Wallwork . numIter - the number of parallel adaptation iterations 829cc2eee55SJoe Wallwork 830cb7bfe8cSJoe Wallwork Level: beginner 831cb7bfe8cSJoe Wallwork 832cb7bfe8cSJoe Wallwork Notes: 833cb7bfe8cSJoe Wallwork This is only used by Mmg and ParMmg (not Pragmatic or Mmg). 834cc2eee55SJoe Wallwork 835cc2eee55SJoe Wallwork .seealso: DMPlexMetricSetNumIterations(), DMPlexMetricGetVerbosity() 836cb7bfe8cSJoe Wallwork @*/ 837cc2eee55SJoe Wallwork PetscErrorCode DMPlexMetricGetNumIterations(DM dm, PetscInt *numIter) 838cc2eee55SJoe Wallwork { 839cc2eee55SJoe Wallwork DM_Plex *plex = (DM_Plex *) dm->data; 840cc2eee55SJoe Wallwork 841cc2eee55SJoe Wallwork PetscFunctionBegin; 842*bc00d7afSJoe Wallwork if (!plex->metricCtx) PetscCall(DMPlexMetricSetFromOptions(dm)); 843cc2eee55SJoe Wallwork *numIter = plex->metricCtx->numIter; 844cc2eee55SJoe Wallwork PetscFunctionReturn(0); 845cc2eee55SJoe Wallwork } 846cc2eee55SJoe Wallwork 84720282da2SJoe Wallwork PetscErrorCode DMPlexP1FieldCreate_Private(DM dm, PetscInt f, PetscInt size, Vec *metric) 84820282da2SJoe Wallwork { 84920282da2SJoe Wallwork MPI_Comm comm; 85020282da2SJoe Wallwork PetscFE fe; 85120282da2SJoe Wallwork PetscInt dim; 85220282da2SJoe Wallwork 85320282da2SJoe Wallwork PetscFunctionBegin; 85420282da2SJoe Wallwork 85520282da2SJoe Wallwork /* Extract metadata from dm */ 8569566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject) dm, &comm)); 8579566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 85820282da2SJoe Wallwork 85920282da2SJoe Wallwork /* Create a P1 field of the requested size */ 8609566063dSJacob Faibussowitsch PetscCall(PetscFECreateLagrange(comm, dim, size, PETSC_TRUE, 1, PETSC_DETERMINE, &fe)); 8619566063dSJacob Faibussowitsch PetscCall(DMSetField(dm, f, NULL, (PetscObject)fe)); 8629566063dSJacob Faibussowitsch PetscCall(DMCreateDS(dm)); 8639566063dSJacob Faibussowitsch PetscCall(PetscFEDestroy(&fe)); 8649566063dSJacob Faibussowitsch PetscCall(DMCreateLocalVector(dm, metric)); 86520282da2SJoe Wallwork 86620282da2SJoe Wallwork PetscFunctionReturn(0); 86720282da2SJoe Wallwork } 86820282da2SJoe Wallwork 869cb7bfe8cSJoe Wallwork /*@ 87020282da2SJoe Wallwork DMPlexMetricCreate - Create a Riemannian metric field 87120282da2SJoe Wallwork 87220282da2SJoe Wallwork Input parameters: 87320282da2SJoe Wallwork + dm - The DM 87420282da2SJoe Wallwork - f - The field number to use 87520282da2SJoe Wallwork 87620282da2SJoe Wallwork Output parameter: 87720282da2SJoe Wallwork . metric - The metric 87820282da2SJoe Wallwork 87920282da2SJoe Wallwork Level: beginner 88020282da2SJoe Wallwork 88131b70465SJoe Wallwork Notes: 88231b70465SJoe Wallwork 88331b70465SJoe Wallwork It is assumed that the DM is comprised of simplices. 88431b70465SJoe Wallwork 88531b70465SJoe Wallwork Command line options for Riemannian metrics: 88631b70465SJoe Wallwork 887cb7bfe8cSJoe Wallwork + -dm_plex_metric_isotropic - Is the metric isotropic? 88893520041SJoe Wallwork . -dm_plex_metric_uniform - Is the metric uniform? 889cb7bfe8cSJoe Wallwork . -dm_plex_metric_restrict_anisotropy_first - Should anisotropy be restricted before normalization? 890cb7bfe8cSJoe Wallwork . -dm_plex_metric_h_min - Minimum tolerated metric magnitude 891cb7bfe8cSJoe Wallwork . -dm_plex_metric_h_max - Maximum tolerated metric magnitude 892cb7bfe8cSJoe Wallwork . -dm_plex_metric_a_max - Maximum tolerated anisotropy 893cb7bfe8cSJoe Wallwork . -dm_plex_metric_p - L-p normalization order 89467b8a455SSatish Balay - -dm_plex_metric_target_complexity - Target metric complexity 895cb7bfe8cSJoe Wallwork 896cb7bfe8cSJoe Wallwork Switching between remeshers can be achieved using 897cb7bfe8cSJoe Wallwork 89867b8a455SSatish Balay . -dm_adaptor <pragmatic/mmg/parmmg> - specify dm adaptor to use 899cb7bfe8cSJoe Wallwork 900cb7bfe8cSJoe Wallwork Further options that are only relevant to Mmg and ParMmg: 901cb7bfe8cSJoe Wallwork 902cb7bfe8cSJoe Wallwork + -dm_plex_metric_gradation_factor - Maximum ratio by which edge lengths may grow during gradation 903cb7bfe8cSJoe Wallwork . -dm_plex_metric_num_iterations - Number of parallel mesh adaptation iterations for ParMmg 904cb7bfe8cSJoe Wallwork . -dm_plex_metric_no_insert - Should node insertion/deletion be turned off? 905cb7bfe8cSJoe Wallwork . -dm_plex_metric_no_swap - Should facet swapping be turned off? 906cb7bfe8cSJoe Wallwork . -dm_plex_metric_no_move - Should node movement be turned off? 907cb7bfe8cSJoe Wallwork - -dm_plex_metric_verbosity - Choose a verbosity level from -1 (silent) to 10 (maximum). 90820282da2SJoe Wallwork 90920282da2SJoe Wallwork .seealso: DMPlexMetricCreateUniform(), DMPlexMetricCreateIsotropic() 910cb7bfe8cSJoe Wallwork @*/ 91120282da2SJoe Wallwork PetscErrorCode DMPlexMetricCreate(DM dm, PetscInt f, Vec *metric) 91220282da2SJoe Wallwork { 91331b70465SJoe Wallwork DM_Plex *plex = (DM_Plex *) dm->data; 91493520041SJoe Wallwork PetscBool isotropic, uniform; 91520282da2SJoe Wallwork PetscInt coordDim, Nd; 91620282da2SJoe Wallwork 91720282da2SJoe Wallwork PetscFunctionBegin; 91831b70465SJoe Wallwork if (!plex->metricCtx) { 9199566063dSJacob Faibussowitsch PetscCall(PetscNew(&plex->metricCtx)); 9209566063dSJacob Faibussowitsch PetscCall(DMPlexMetricSetFromOptions(dm)); 92131b70465SJoe Wallwork } 9229566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDim(dm, &coordDim)); 92320282da2SJoe Wallwork Nd = coordDim*coordDim; 9249566063dSJacob Faibussowitsch PetscCall(DMPlexMetricIsUniform(dm, &uniform)); 9259566063dSJacob Faibussowitsch PetscCall(DMPlexMetricIsIsotropic(dm, &isotropic)); 92693520041SJoe Wallwork if (uniform) { 92793520041SJoe Wallwork MPI_Comm comm; 92893520041SJoe Wallwork 9299566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject) dm, &comm)); 930*bc00d7afSJoe Wallwork PetscCheck(isotropic, comm, PETSC_ERR_SUP, "Uniform anisotropic metrics not supported"); 9319566063dSJacob Faibussowitsch PetscCall(VecCreate(comm, metric)); 9329566063dSJacob Faibussowitsch PetscCall(VecSetSizes(*metric, 1, PETSC_DECIDE)); 9339566063dSJacob Faibussowitsch PetscCall(VecSetFromOptions(*metric)); 93493520041SJoe Wallwork } else if (isotropic) { 9359566063dSJacob Faibussowitsch PetscCall(DMPlexP1FieldCreate_Private(dm, f, 1, metric)); 93693520041SJoe Wallwork } else { 9379566063dSJacob Faibussowitsch PetscCall(DMPlexP1FieldCreate_Private(dm, f, Nd, metric)); 93893520041SJoe Wallwork } 93920282da2SJoe Wallwork PetscFunctionReturn(0); 94020282da2SJoe Wallwork } 94120282da2SJoe Wallwork 942cb7bfe8cSJoe Wallwork /*@ 94320282da2SJoe Wallwork DMPlexMetricCreateUniform - Construct a uniform isotropic metric 94420282da2SJoe Wallwork 94520282da2SJoe Wallwork Input parameters: 94620282da2SJoe Wallwork + dm - The DM 94720282da2SJoe Wallwork . f - The field number to use 94820282da2SJoe Wallwork - alpha - Scaling parameter for the diagonal 94920282da2SJoe Wallwork 95020282da2SJoe Wallwork Output parameter: 95120282da2SJoe Wallwork . metric - The uniform metric 95220282da2SJoe Wallwork 95320282da2SJoe Wallwork Level: beginner 95420282da2SJoe Wallwork 95593520041SJoe Wallwork Note: In this case, the metric is constant in space and so is only specified for a single vertex. 95620282da2SJoe Wallwork 95720282da2SJoe Wallwork .seealso: DMPlexMetricCreate(), DMPlexMetricCreateIsotropic() 958cb7bfe8cSJoe Wallwork @*/ 95920282da2SJoe Wallwork PetscErrorCode DMPlexMetricCreateUniform(DM dm, PetscInt f, PetscReal alpha, Vec *metric) 96020282da2SJoe Wallwork { 96120282da2SJoe Wallwork PetscFunctionBegin; 9629566063dSJacob Faibussowitsch PetscCall(DMPlexMetricSetUniform(dm, PETSC_TRUE)); 9639566063dSJacob Faibussowitsch PetscCall(DMPlexMetricCreate(dm, f, metric)); 9642c71b3e2SJacob Faibussowitsch PetscCheck(alpha, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Uniform metric scaling is undefined"); 965*bc00d7afSJoe Wallwork PetscCheck(alpha > 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Uniform metric scaling should be in (0, inf)"); 9669566063dSJacob Faibussowitsch PetscCall(VecSet(*metric, alpha)); 9679566063dSJacob Faibussowitsch PetscCall(VecAssemblyBegin(*metric)); 9689566063dSJacob Faibussowitsch PetscCall(VecAssemblyEnd(*metric)); 96920282da2SJoe Wallwork PetscFunctionReturn(0); 97020282da2SJoe Wallwork } 97120282da2SJoe Wallwork 97293520041SJoe Wallwork static void identity(PetscInt dim, PetscInt Nf, PetscInt NfAux, 97393520041SJoe Wallwork const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[], 97493520041SJoe Wallwork const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[], 97593520041SJoe Wallwork PetscReal t, const PetscReal x[], PetscInt numConstants, const PetscScalar constants[], PetscScalar f0[]) 97693520041SJoe Wallwork { 97793520041SJoe Wallwork f0[0] = u[0]; 97893520041SJoe Wallwork } 97993520041SJoe Wallwork 980cb7bfe8cSJoe Wallwork /*@ 98120282da2SJoe Wallwork DMPlexMetricCreateIsotropic - Construct an isotropic metric from an error indicator 98220282da2SJoe Wallwork 98320282da2SJoe Wallwork Input parameters: 98420282da2SJoe Wallwork + dm - The DM 98520282da2SJoe Wallwork . f - The field number to use 98620282da2SJoe Wallwork - indicator - The error indicator 98720282da2SJoe Wallwork 98820282da2SJoe Wallwork Output parameter: 98920282da2SJoe Wallwork . metric - The isotropic metric 99020282da2SJoe Wallwork 99120282da2SJoe Wallwork Level: beginner 99220282da2SJoe Wallwork 99320282da2SJoe Wallwork Notes: 99420282da2SJoe Wallwork 99520282da2SJoe Wallwork It is assumed that the DM is comprised of simplices. 99620282da2SJoe Wallwork 99793520041SJoe Wallwork The indicator needs to be a scalar field. If it is not defined vertex-wise, then it is projected appropriately. 99820282da2SJoe Wallwork 99920282da2SJoe Wallwork .seealso: DMPlexMetricCreate(), DMPlexMetricCreateUniform() 1000cb7bfe8cSJoe Wallwork @*/ 100120282da2SJoe Wallwork PetscErrorCode DMPlexMetricCreateIsotropic(DM dm, PetscInt f, Vec indicator, Vec *metric) 100220282da2SJoe Wallwork { 100393520041SJoe Wallwork PetscInt m, n; 100420282da2SJoe Wallwork 100520282da2SJoe Wallwork PetscFunctionBegin; 10069566063dSJacob Faibussowitsch PetscCall(DMPlexMetricSetIsotropic(dm, PETSC_TRUE)); 10079566063dSJacob Faibussowitsch PetscCall(DMPlexMetricCreate(dm, f, metric)); 10089566063dSJacob Faibussowitsch PetscCall(VecGetSize(indicator, &m)); 10099566063dSJacob Faibussowitsch PetscCall(VecGetSize(*metric, &n)); 10109566063dSJacob Faibussowitsch if (m == n) PetscCall(VecCopy(indicator, *metric)); 101193520041SJoe Wallwork else { 101293520041SJoe Wallwork DM dmIndi; 101393520041SJoe Wallwork void (*funcs[1])(PetscInt, PetscInt, PetscInt, 101493520041SJoe Wallwork const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], 101593520041SJoe Wallwork const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], 101693520041SJoe Wallwork PetscReal, const PetscReal[], PetscInt, const PetscScalar[], PetscScalar[]); 101793520041SJoe Wallwork 10189566063dSJacob Faibussowitsch PetscCall(VecGetDM(indicator, &dmIndi)); 101993520041SJoe Wallwork funcs[0] = identity; 10209566063dSJacob Faibussowitsch PetscCall(DMProjectFieldLocal(dmIndi, 0.0, indicator, funcs, INSERT_VALUES, *metric)); 102120282da2SJoe Wallwork } 102220282da2SJoe Wallwork PetscFunctionReturn(0); 102320282da2SJoe Wallwork } 102420282da2SJoe Wallwork 102582490253SJoe Wallwork static PetscErrorCode LAPACKsyevFail(PetscInt dim, PetscScalar Mpos[]) 102682490253SJoe Wallwork { 102782490253SJoe Wallwork PetscInt i, j; 102882490253SJoe Wallwork 102982490253SJoe Wallwork PetscFunctionBegin; 103082490253SJoe Wallwork PetscPrintf(PETSC_COMM_SELF, "Failed to apply LAPACKsyev to the matrix\n"); 103182490253SJoe Wallwork for (i = 0; i < dim; ++i) { 103282490253SJoe Wallwork if (i == 0) PetscPrintf(PETSC_COMM_SELF, " [["); 103382490253SJoe Wallwork else PetscPrintf(PETSC_COMM_SELF, " ["); 103482490253SJoe Wallwork for (j = 0; j < dim; ++j) { 103563a3b9bcSJacob Faibussowitsch if (j < dim-1) PetscPrintf(PETSC_COMM_SELF, "%15.8e, ", (double)PetscAbsScalar(Mpos[i*dim+j])); 103663a3b9bcSJacob Faibussowitsch else PetscPrintf(PETSC_COMM_SELF, "%15.8e", (double)PetscAbsScalar(Mpos[i*dim+j])); 103782490253SJoe Wallwork } 103882490253SJoe Wallwork if (i < dim-1) PetscPrintf(PETSC_COMM_SELF, "]\n"); 103982490253SJoe Wallwork else PetscPrintf(PETSC_COMM_SELF, "]]\n"); 104082490253SJoe Wallwork } 104182490253SJoe Wallwork PetscFunctionReturn(0); 104282490253SJoe Wallwork } 104382490253SJoe Wallwork 10443f07679eSJoe Wallwork static PetscErrorCode DMPlexMetricModify_Private(PetscInt dim, PetscReal h_min, PetscReal h_max, PetscReal a_max, PetscScalar Mp[], PetscScalar *detMp) 104520282da2SJoe Wallwork { 104620282da2SJoe Wallwork PetscInt i, j, k; 104720282da2SJoe Wallwork PetscReal *eigs, max_eig, l_min = 1.0/(h_max*h_max), l_max = 1.0/(h_min*h_min), la_min = 1.0/(a_max*a_max); 104820282da2SJoe Wallwork PetscScalar *Mpos; 104920282da2SJoe Wallwork 105020282da2SJoe Wallwork PetscFunctionBegin; 10519566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(dim*dim, &Mpos, dim, &eigs)); 105220282da2SJoe Wallwork 105320282da2SJoe Wallwork /* Symmetrize */ 105420282da2SJoe Wallwork for (i = 0; i < dim; ++i) { 105520282da2SJoe Wallwork Mpos[i*dim+i] = Mp[i*dim+i]; 105620282da2SJoe Wallwork for (j = i+1; j < dim; ++j) { 105720282da2SJoe Wallwork Mpos[i*dim+j] = 0.5*(Mp[i*dim+j] + Mp[j*dim+i]); 105820282da2SJoe Wallwork Mpos[j*dim+i] = Mpos[i*dim+j]; 105920282da2SJoe Wallwork } 106020282da2SJoe Wallwork } 106120282da2SJoe Wallwork 106220282da2SJoe Wallwork /* Compute eigendecomposition */ 106393520041SJoe Wallwork if (dim == 1) { 106493520041SJoe Wallwork 106593520041SJoe Wallwork /* Isotropic case */ 106693520041SJoe Wallwork eigs[0] = PetscRealPart(Mpos[0]); 106793520041SJoe Wallwork Mpos[0] = 1.0; 106893520041SJoe Wallwork } else { 106993520041SJoe Wallwork 107093520041SJoe Wallwork /* Anisotropic case */ 107120282da2SJoe Wallwork PetscScalar *work; 107220282da2SJoe Wallwork PetscBLASInt lwork; 107320282da2SJoe Wallwork 107420282da2SJoe Wallwork lwork = 5*dim; 10759566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(5*dim, &work)); 107620282da2SJoe Wallwork { 107720282da2SJoe Wallwork PetscBLASInt lierr; 107820282da2SJoe Wallwork PetscBLASInt nb; 107920282da2SJoe Wallwork 10809566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(dim, &nb)); 10819566063dSJacob Faibussowitsch PetscCall(PetscFPTrapPush(PETSC_FP_TRAP_OFF)); 108220282da2SJoe Wallwork #if defined(PETSC_USE_COMPLEX) 108320282da2SJoe Wallwork { 108420282da2SJoe Wallwork PetscReal *rwork; 10859566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(3*dim, &rwork)); 108620282da2SJoe Wallwork PetscStackCallBLAS("LAPACKsyev",LAPACKsyev_("V","U",&nb,Mpos,&nb,eigs,work,&lwork,rwork,&lierr)); 10879566063dSJacob Faibussowitsch PetscCall(PetscFree(rwork)); 108820282da2SJoe Wallwork } 108920282da2SJoe Wallwork #else 109020282da2SJoe Wallwork PetscStackCallBLAS("LAPACKsyev",LAPACKsyev_("V","U",&nb,Mpos,&nb,eigs,work,&lwork,&lierr)); 109120282da2SJoe Wallwork #endif 109282490253SJoe Wallwork if (lierr) { 109382490253SJoe Wallwork for (i = 0; i < dim; ++i) { 109482490253SJoe Wallwork Mpos[i*dim+i] = Mp[i*dim+i]; 109582490253SJoe Wallwork for (j = i+1; j < dim; ++j) { 109682490253SJoe Wallwork Mpos[i*dim+j] = 0.5*(Mp[i*dim+j] + Mp[j*dim+i]); 109782490253SJoe Wallwork Mpos[j*dim+i] = Mpos[i*dim+j]; 109882490253SJoe Wallwork } 109982490253SJoe Wallwork } 110082490253SJoe Wallwork LAPACKsyevFail(dim, Mpos); 110198921bdaSJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_LIB, "Error in LAPACK routine %d", (int) lierr); 110282490253SJoe Wallwork } 11039566063dSJacob Faibussowitsch PetscCall(PetscFPTrapPop()); 110420282da2SJoe Wallwork } 11059566063dSJacob Faibussowitsch PetscCall(PetscFree(work)); 110620282da2SJoe Wallwork } 110720282da2SJoe Wallwork 110820282da2SJoe Wallwork /* Reflect to positive orthant and enforce maximum and minimum size */ 110920282da2SJoe Wallwork max_eig = 0.0; 111020282da2SJoe Wallwork for (i = 0; i < dim; ++i) { 111120282da2SJoe Wallwork eigs[i] = PetscMin(l_max, PetscMax(l_min, PetscAbsReal(eigs[i]))); 111220282da2SJoe Wallwork max_eig = PetscMax(eigs[i], max_eig); 111320282da2SJoe Wallwork } 111420282da2SJoe Wallwork 11153f07679eSJoe Wallwork /* Enforce maximum anisotropy and compute determinant */ 11163f07679eSJoe Wallwork *detMp = 1.0; 111720282da2SJoe Wallwork for (i = 0; i < dim; ++i) { 111820282da2SJoe Wallwork if (a_max > 1.0) eigs[i] = PetscMax(eigs[i], max_eig*la_min); 11193f07679eSJoe Wallwork *detMp *= eigs[i]; 112020282da2SJoe Wallwork } 112120282da2SJoe Wallwork 112220282da2SJoe Wallwork /* Reconstruct Hessian */ 112320282da2SJoe Wallwork for (i = 0; i < dim; ++i) { 112420282da2SJoe Wallwork for (j = 0; j < dim; ++j) { 112520282da2SJoe Wallwork Mp[i*dim+j] = 0.0; 112620282da2SJoe Wallwork for (k = 0; k < dim; ++k) { 112720282da2SJoe Wallwork Mp[i*dim+j] += Mpos[k*dim+i] * eigs[k] * Mpos[k*dim+j]; 112820282da2SJoe Wallwork } 112920282da2SJoe Wallwork } 113020282da2SJoe Wallwork } 11319566063dSJacob Faibussowitsch PetscCall(PetscFree2(Mpos, eigs)); 113220282da2SJoe Wallwork 113320282da2SJoe Wallwork PetscFunctionReturn(0); 113420282da2SJoe Wallwork } 113520282da2SJoe Wallwork 1136cb7bfe8cSJoe Wallwork /*@ 113720282da2SJoe Wallwork DMPlexMetricEnforceSPD - Enforce symmetric positive-definiteness of a metric 113820282da2SJoe Wallwork 113920282da2SJoe Wallwork Input parameters: 114020282da2SJoe Wallwork + dm - The DM 11413f07679eSJoe Wallwork . metricIn - The metric 114299abec2bSJoe Wallwork . restrictSizes - Should maximum/minimum metric magnitudes be enforced? 11433f07679eSJoe Wallwork - restrictAnisotropy - Should maximum anisotropy be enforced? 114420282da2SJoe Wallwork 114520282da2SJoe Wallwork Output parameter: 11463f07679eSJoe Wallwork + metricOut - The metric 11473f07679eSJoe Wallwork - determinant - Its determinant 114820282da2SJoe Wallwork 114920282da2SJoe Wallwork Level: beginner 115020282da2SJoe Wallwork 1151cb7bfe8cSJoe Wallwork Notes: 1152cb7bfe8cSJoe Wallwork 1153cb7bfe8cSJoe Wallwork Relevant command line options: 1154cb7bfe8cSJoe Wallwork 115593520041SJoe Wallwork + -dm_plex_metric_isotropic - Is the metric isotropic? 115693520041SJoe Wallwork . -dm_plex_metric_uniform - Is the metric uniform? 115793520041SJoe Wallwork . -dm_plex_metric_h_min - Minimum tolerated metric magnitude 1158cb7bfe8cSJoe Wallwork . -dm_plex_metric_h_max - Maximum tolerated metric magnitude 1159cb7bfe8cSJoe Wallwork - -dm_plex_metric_a_max - Maximum tolerated anisotropy 1160cb7bfe8cSJoe Wallwork 116120282da2SJoe Wallwork .seealso: DMPlexMetricNormalize(), DMPlexMetricIntersection() 1162cb7bfe8cSJoe Wallwork @*/ 11633f07679eSJoe Wallwork PetscErrorCode DMPlexMetricEnforceSPD(DM dm, Vec metricIn, PetscBool restrictSizes, PetscBool restrictAnisotropy, Vec *metricOut, Vec *determinant) 116420282da2SJoe Wallwork { 11653f07679eSJoe Wallwork DM dmDet; 116693520041SJoe Wallwork PetscBool isotropic, uniform; 116720282da2SJoe Wallwork PetscInt dim, vStart, vEnd, v; 11683f07679eSJoe Wallwork PetscScalar *met, *det; 116920282da2SJoe Wallwork PetscReal h_min = 1.0e-30, h_max = 1.0e+30, a_max = 0.0; 117020282da2SJoe Wallwork 117120282da2SJoe Wallwork PetscFunctionBegin; 11729566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DMPLEX_MetricEnforceSPD,0,0,0,0)); 117320282da2SJoe Wallwork 117420282da2SJoe Wallwork /* Extract metadata from dm */ 11759566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 117620282da2SJoe Wallwork if (restrictSizes) { 11779566063dSJacob Faibussowitsch PetscCall(DMPlexMetricGetMinimumMagnitude(dm, &h_min)); 11789566063dSJacob Faibussowitsch PetscCall(DMPlexMetricGetMaximumMagnitude(dm, &h_max)); 117999abec2bSJoe Wallwork h_min = PetscMax(h_min, 1.0e-30); 118099abec2bSJoe Wallwork h_max = PetscMin(h_max, 1.0e+30); 1181*bc00d7afSJoe Wallwork PetscCheck(h_min < h_max, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Minimum metric magnitude should be smaller than maximum metric magnitude"); 118299abec2bSJoe Wallwork } 118399abec2bSJoe Wallwork if (restrictAnisotropy) { 11849566063dSJacob Faibussowitsch PetscCall(DMPlexMetricGetMaximumAnisotropy(dm, &a_max)); 118599abec2bSJoe Wallwork a_max = PetscMin(a_max, 1.0e+30); 118620282da2SJoe Wallwork } 118720282da2SJoe Wallwork 118893520041SJoe Wallwork /* Setup output metric */ 11899566063dSJacob Faibussowitsch PetscCall(DMPlexMetricCreate(dm, 0, metricOut)); 11909566063dSJacob Faibussowitsch PetscCall(VecCopy(metricIn, *metricOut)); 119193520041SJoe Wallwork 119293520041SJoe Wallwork /* Enforce SPD and extract determinant */ 11939566063dSJacob Faibussowitsch PetscCall(VecGetArray(*metricOut, &met)); 11949566063dSJacob Faibussowitsch PetscCall(DMPlexMetricIsUniform(dm, &uniform)); 11959566063dSJacob Faibussowitsch PetscCall(DMPlexMetricIsIsotropic(dm, &isotropic)); 119693520041SJoe Wallwork if (uniform) { 1197d1a5b989SMatthew G. Knepley PetscCheck(isotropic, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Uniform anisotropic metrics cannot exist"); 119893520041SJoe Wallwork 119993520041SJoe Wallwork /* Uniform case */ 12009566063dSJacob Faibussowitsch PetscCall(VecDuplicate(metricIn, determinant)); 12019566063dSJacob Faibussowitsch PetscCall(VecGetArray(*determinant, &det)); 12029566063dSJacob Faibussowitsch PetscCall(DMPlexMetricModify_Private(1, h_min, h_max, a_max, met, det)); 12039566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(*determinant, &det)); 120493520041SJoe Wallwork } else { 120593520041SJoe Wallwork 120693520041SJoe Wallwork /* Spatially varying case */ 120793520041SJoe Wallwork PetscInt nrow; 120893520041SJoe Wallwork 120993520041SJoe Wallwork if (isotropic) nrow = 1; 121093520041SJoe Wallwork else nrow = dim; 12119566063dSJacob Faibussowitsch PetscCall(DMClone(dm, &dmDet)); 12129566063dSJacob Faibussowitsch PetscCall(DMPlexP1FieldCreate_Private(dmDet, 0, 1, determinant)); 12139566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthStratum(dm, 0, &vStart, &vEnd)); 12149566063dSJacob Faibussowitsch PetscCall(VecGetArray(*determinant, &det)); 121520282da2SJoe Wallwork for (v = vStart; v < vEnd; ++v) { 12163f07679eSJoe Wallwork PetscScalar *vmet, *vdet; 12179566063dSJacob Faibussowitsch PetscCall(DMPlexPointLocalRef(dm, v, met, &vmet)); 12189566063dSJacob Faibussowitsch PetscCall(DMPlexPointLocalRef(dmDet, v, det, &vdet)); 12199566063dSJacob Faibussowitsch PetscCall(DMPlexMetricModify_Private(nrow, h_min, h_max, a_max, vmet, vdet)); 122020282da2SJoe Wallwork } 12219566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(*determinant, &det)); 122293520041SJoe Wallwork } 12239566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(*metricOut, &met)); 1224fe902aceSJoe Wallwork 12259566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DMPLEX_MetricEnforceSPD,0,0,0,0)); 122620282da2SJoe Wallwork PetscFunctionReturn(0); 122720282da2SJoe Wallwork } 122820282da2SJoe Wallwork 122920282da2SJoe Wallwork static void detMFunc(PetscInt dim, PetscInt Nf, PetscInt NfAux, 123020282da2SJoe Wallwork const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[], 123120282da2SJoe Wallwork const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[], 123220282da2SJoe Wallwork PetscReal t, const PetscReal x[], PetscInt numConstants, const PetscScalar constants[], PetscScalar f0[]) 123320282da2SJoe Wallwork { 123420282da2SJoe Wallwork const PetscScalar p = constants[0]; 123520282da2SJoe Wallwork 1236985ad86eSJose E. Roman f0[0] = PetscPowScalar(u[0], p/(2.0*p + dim)); 123720282da2SJoe Wallwork } 123820282da2SJoe Wallwork 1239cb7bfe8cSJoe Wallwork /*@ 124020282da2SJoe Wallwork DMPlexMetricNormalize - Apply L-p normalization to a metric 124120282da2SJoe Wallwork 124220282da2SJoe Wallwork Input parameters: 124320282da2SJoe Wallwork + dm - The DM 124420282da2SJoe Wallwork . metricIn - The unnormalized metric 124516522936SJoe Wallwork . restrictSizes - Should maximum/minimum metric magnitudes be enforced? 124616522936SJoe Wallwork - restrictAnisotropy - Should maximum metric anisotropy be enforced? 124720282da2SJoe Wallwork 124820282da2SJoe Wallwork Output parameter: 124920282da2SJoe Wallwork . metricOut - The normalized metric 125020282da2SJoe Wallwork 125120282da2SJoe Wallwork Level: beginner 125220282da2SJoe Wallwork 1253cb7bfe8cSJoe Wallwork Notes: 1254cb7bfe8cSJoe Wallwork 1255cb7bfe8cSJoe Wallwork Relevant command line options: 1256cb7bfe8cSJoe Wallwork 125793520041SJoe Wallwork + -dm_plex_metric_isotropic - Is the metric isotropic? 125893520041SJoe Wallwork . -dm_plex_metric_uniform - Is the metric uniform? 125993520041SJoe Wallwork . -dm_plex_metric_restrict_anisotropy_first - Should anisotropy be restricted before normalization? 1260cb7bfe8cSJoe Wallwork . -dm_plex_metric_h_min - Minimum tolerated metric magnitude 1261cb7bfe8cSJoe Wallwork . -dm_plex_metric_h_max - Maximum tolerated metric magnitude 1262cb7bfe8cSJoe Wallwork . -dm_plex_metric_a_max - Maximum tolerated anisotropy 1263cb7bfe8cSJoe Wallwork . -dm_plex_metric_p - L-p normalization order 1264cb7bfe8cSJoe Wallwork - -dm_plex_metric_target_complexity - Target metric complexity 1265cb7bfe8cSJoe Wallwork 126620282da2SJoe Wallwork .seealso: DMPlexMetricEnforceSPD(), DMPlexMetricIntersection() 1267cb7bfe8cSJoe Wallwork @*/ 126816522936SJoe Wallwork PetscErrorCode DMPlexMetricNormalize(DM dm, Vec metricIn, PetscBool restrictSizes, PetscBool restrictAnisotropy, Vec *metricOut) 126920282da2SJoe Wallwork { 12703f07679eSJoe Wallwork DM dmDet; 127120282da2SJoe Wallwork MPI_Comm comm; 127293520041SJoe Wallwork PetscBool restrictAnisotropyFirst, isotropic, uniform; 127320282da2SJoe Wallwork PetscDS ds; 127420282da2SJoe Wallwork PetscInt dim, Nd, vStart, vEnd, v, i; 12753f07679eSJoe Wallwork PetscScalar *met, *det, integral, constants[1]; 127693520041SJoe Wallwork PetscReal p, h_min = 1.0e-30, h_max = 1.0e+30, a_max = 0.0, factGlob, fact, target, realIntegral; 12773f07679eSJoe Wallwork Vec determinant; 127820282da2SJoe Wallwork 127920282da2SJoe Wallwork PetscFunctionBegin; 12809566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DMPLEX_MetricNormalize,0,0,0,0)); 128120282da2SJoe Wallwork 128220282da2SJoe Wallwork /* Extract metadata from dm */ 12839566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject) dm, &comm)); 12849566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 12859566063dSJacob Faibussowitsch PetscCall(DMPlexMetricIsUniform(dm, &uniform)); 12869566063dSJacob Faibussowitsch PetscCall(DMPlexMetricIsIsotropic(dm, &isotropic)); 128793520041SJoe Wallwork if (isotropic) Nd = 1; 128893520041SJoe Wallwork else Nd = dim*dim; 128920282da2SJoe Wallwork 129020282da2SJoe Wallwork /* Set up metric and ensure it is SPD */ 12919566063dSJacob Faibussowitsch PetscCall(DMPlexMetricRestrictAnisotropyFirst(dm, &restrictAnisotropyFirst)); 12929566063dSJacob Faibussowitsch PetscCall(DMPlexMetricEnforceSPD(dm, metricIn, PETSC_FALSE, (PetscBool)(restrictAnisotropy && restrictAnisotropyFirst), metricOut, &determinant)); 129320282da2SJoe Wallwork 129420282da2SJoe Wallwork /* Compute global normalization factor */ 12959566063dSJacob Faibussowitsch PetscCall(DMPlexMetricGetTargetComplexity(dm, &target)); 12969566063dSJacob Faibussowitsch PetscCall(DMPlexMetricGetNormalizationOrder(dm, &p)); 129716522936SJoe Wallwork constants[0] = p; 129893520041SJoe Wallwork if (uniform) { 1299*bc00d7afSJoe Wallwork PetscCheck(isotropic, comm, PETSC_ERR_SUP, "Uniform anisotropic metrics not supported"); 130093520041SJoe Wallwork DM dmTmp; 130193520041SJoe Wallwork Vec tmp; 130293520041SJoe Wallwork 13039566063dSJacob Faibussowitsch PetscCall(DMClone(dm, &dmTmp)); 13049566063dSJacob Faibussowitsch PetscCall(DMPlexP1FieldCreate_Private(dmTmp, 0, 1, &tmp)); 13059566063dSJacob Faibussowitsch PetscCall(VecGetArray(determinant, &det)); 13069566063dSJacob Faibussowitsch PetscCall(VecSet(tmp, det[0])); 13079566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(determinant, &det)); 13089566063dSJacob Faibussowitsch PetscCall(DMGetDS(dmTmp, &ds)); 13099566063dSJacob Faibussowitsch PetscCall(PetscDSSetConstants(ds, 1, constants)); 13109566063dSJacob Faibussowitsch PetscCall(PetscDSSetObjective(ds, 0, detMFunc)); 13119566063dSJacob Faibussowitsch PetscCall(DMPlexComputeIntegralFEM(dmTmp, tmp, &integral, NULL)); 13129566063dSJacob Faibussowitsch PetscCall(VecDestroy(&tmp)); 13139566063dSJacob Faibussowitsch PetscCall(DMDestroy(&dmTmp)); 131493520041SJoe Wallwork } else { 13159566063dSJacob Faibussowitsch PetscCall(VecGetDM(determinant, &dmDet)); 13169566063dSJacob Faibussowitsch PetscCall(DMGetDS(dmDet, &ds)); 13179566063dSJacob Faibussowitsch PetscCall(PetscDSSetConstants(ds, 1, constants)); 13189566063dSJacob Faibussowitsch PetscCall(PetscDSSetObjective(ds, 0, detMFunc)); 13199566063dSJacob Faibussowitsch PetscCall(DMPlexComputeIntegralFEM(dmDet, determinant, &integral, NULL)); 132093520041SJoe Wallwork } 13213f07679eSJoe Wallwork realIntegral = PetscRealPart(integral); 1322*bc00d7afSJoe Wallwork PetscCheck(realIntegral > 1.0e-30, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Global metric normalization factor must be in (0, inf). Is the input metric positive-definite?"); 13233f07679eSJoe Wallwork factGlob = PetscPowReal(target/realIntegral, 2.0/dim); 132420282da2SJoe Wallwork 132520282da2SJoe Wallwork /* Apply local scaling */ 132620282da2SJoe Wallwork if (restrictSizes) { 13279566063dSJacob Faibussowitsch PetscCall(DMPlexMetricGetMinimumMagnitude(dm, &h_min)); 13289566063dSJacob Faibussowitsch PetscCall(DMPlexMetricGetMaximumMagnitude(dm, &h_max)); 132916522936SJoe Wallwork h_min = PetscMax(h_min, 1.0e-30); 133016522936SJoe Wallwork h_max = PetscMin(h_max, 1.0e+30); 1331*bc00d7afSJoe Wallwork PetscCheck(h_min < h_max, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Minimum metric magnitude should be smaller than maximum metric magnitude"); 133216522936SJoe Wallwork } 133316522936SJoe Wallwork if (restrictAnisotropy && !restrictAnisotropyFirst) { 13349566063dSJacob Faibussowitsch PetscCall(DMPlexMetricGetMaximumAnisotropy(dm, &a_max)); 133516522936SJoe Wallwork a_max = PetscMin(a_max, 1.0e+30); 133620282da2SJoe Wallwork } 13379566063dSJacob Faibussowitsch PetscCall(VecGetArray(*metricOut, &met)); 13389566063dSJacob Faibussowitsch PetscCall(VecGetArray(determinant, &det)); 133993520041SJoe Wallwork if (uniform) { 134093520041SJoe Wallwork 134193520041SJoe Wallwork /* Uniform case */ 134293520041SJoe Wallwork met[0] *= factGlob * PetscPowReal(PetscAbsScalar(det[0]), -1.0/(2*p+dim)); 13439566063dSJacob Faibussowitsch if (restrictSizes) PetscCall(DMPlexMetricModify_Private(1, h_min, h_max, a_max, met, det)); 134493520041SJoe Wallwork } else { 134593520041SJoe Wallwork 134693520041SJoe Wallwork /* Spatially varying case */ 134793520041SJoe Wallwork PetscInt nrow; 134893520041SJoe Wallwork 134993520041SJoe Wallwork if (isotropic) nrow = 1; 135093520041SJoe Wallwork else nrow = dim; 13519566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthStratum(dm, 0, &vStart, &vEnd)); 135220282da2SJoe Wallwork for (v = vStart; v < vEnd; ++v) { 13533f07679eSJoe Wallwork PetscScalar *Mp, *detM; 135420282da2SJoe Wallwork 13559566063dSJacob Faibussowitsch PetscCall(DMPlexPointLocalRef(dm, v, met, &Mp)); 13569566063dSJacob Faibussowitsch PetscCall(DMPlexPointLocalRef(dmDet, v, det, &detM)); 13573f07679eSJoe Wallwork fact = factGlob * PetscPowReal(PetscAbsScalar(detM[0]), -1.0/(2*p+dim)); 135820282da2SJoe Wallwork for (i = 0; i < Nd; ++i) Mp[i] *= fact; 13599566063dSJacob Faibussowitsch if (restrictSizes) PetscCall(DMPlexMetricModify_Private(nrow, h_min, h_max, a_max, Mp, detM)); 136093520041SJoe Wallwork } 136120282da2SJoe Wallwork } 13629566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(determinant, &det)); 13639566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(*metricOut, &met)); 13649566063dSJacob Faibussowitsch PetscCall(VecDestroy(&determinant)); 13659566063dSJacob Faibussowitsch if (!uniform) PetscCall(DMDestroy(&dmDet)); 136620282da2SJoe Wallwork 13679566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DMPLEX_MetricNormalize,0,0,0,0)); 136820282da2SJoe Wallwork PetscFunctionReturn(0); 136920282da2SJoe Wallwork } 137020282da2SJoe Wallwork 1371cb7bfe8cSJoe Wallwork /*@ 137220282da2SJoe Wallwork DMPlexMetricAverage - Compute the average of a list of metrics 137320282da2SJoe Wallwork 1374f1a722f8SMatthew G. Knepley Input Parameters: 137520282da2SJoe Wallwork + dm - The DM 137620282da2SJoe Wallwork . numMetrics - The number of metrics to be averaged 137720282da2SJoe Wallwork . weights - Weights for the average 137820282da2SJoe Wallwork - metrics - The metrics to be averaged 137920282da2SJoe Wallwork 138020282da2SJoe Wallwork Output Parameter: 138120282da2SJoe Wallwork . metricAvg - The averaged metric 138220282da2SJoe Wallwork 138320282da2SJoe Wallwork Level: beginner 138420282da2SJoe Wallwork 138520282da2SJoe Wallwork Notes: 138620282da2SJoe Wallwork The weights should sum to unity. 138720282da2SJoe Wallwork 138820282da2SJoe Wallwork If weights are not provided then an unweighted average is used. 138920282da2SJoe Wallwork 139020282da2SJoe Wallwork .seealso: DMPlexMetricAverage2(), DMPlexMetricAverage3(), DMPlexMetricIntersection() 1391cb7bfe8cSJoe Wallwork @*/ 139220282da2SJoe Wallwork PetscErrorCode DMPlexMetricAverage(DM dm, PetscInt numMetrics, PetscReal weights[], Vec metrics[], Vec *metricAvg) 139320282da2SJoe Wallwork { 139420282da2SJoe Wallwork PetscBool haveWeights = PETSC_TRUE; 139593520041SJoe Wallwork PetscInt i, m, n; 139620282da2SJoe Wallwork PetscReal sum = 0.0, tol = 1.0e-10; 139720282da2SJoe Wallwork 139820282da2SJoe Wallwork PetscFunctionBegin; 13999566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DMPLEX_MetricAverage,0,0,0,0)); 140063a3b9bcSJacob Faibussowitsch PetscCheck(numMetrics >= 1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Cannot average %" PetscInt_FMT " < 1 metrics", numMetrics); 14019566063dSJacob Faibussowitsch PetscCall(DMPlexMetricCreate(dm, 0, metricAvg)); 14029566063dSJacob Faibussowitsch PetscCall(VecSet(*metricAvg, 0.0)); 14039566063dSJacob Faibussowitsch PetscCall(VecGetSize(*metricAvg, &m)); 140493520041SJoe Wallwork for (i = 0; i < numMetrics; ++i) { 14059566063dSJacob Faibussowitsch PetscCall(VecGetSize(metrics[i], &n)); 14065f80ce2aSJacob Faibussowitsch PetscCheck(m == n, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Averaging different metric types not implemented"); 140793520041SJoe Wallwork } 140820282da2SJoe Wallwork 140920282da2SJoe Wallwork /* Default to the unweighted case */ 141020282da2SJoe Wallwork if (!weights) { 14119566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(numMetrics, &weights)); 141220282da2SJoe Wallwork haveWeights = PETSC_FALSE; 141320282da2SJoe Wallwork for (i = 0; i < numMetrics; ++i) {weights[i] = 1.0/numMetrics; } 141420282da2SJoe Wallwork } 141520282da2SJoe Wallwork 141620282da2SJoe Wallwork /* Check weights sum to unity */ 141793520041SJoe Wallwork for (i = 0; i < numMetrics; ++i) sum += weights[i]; 14185f80ce2aSJacob Faibussowitsch PetscCheck(PetscAbsReal(sum - 1) <= tol, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Weights do not sum to unity"); 141920282da2SJoe Wallwork 142020282da2SJoe Wallwork /* Compute metric average */ 14219566063dSJacob Faibussowitsch for (i = 0; i < numMetrics; ++i) PetscCall(VecAXPY(*metricAvg, weights[i], metrics[i])); 14229566063dSJacob Faibussowitsch if (!haveWeights) PetscCall(PetscFree(weights)); 1423fe902aceSJoe Wallwork 14249566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DMPLEX_MetricAverage,0,0,0,0)); 142520282da2SJoe Wallwork PetscFunctionReturn(0); 142620282da2SJoe Wallwork } 142720282da2SJoe Wallwork 1428cb7bfe8cSJoe Wallwork /*@ 142920282da2SJoe Wallwork DMPlexMetricAverage2 - Compute the unweighted average of two metrics 143020282da2SJoe Wallwork 1431f1a722f8SMatthew G. Knepley Input Parameters: 143220282da2SJoe Wallwork + dm - The DM 143320282da2SJoe Wallwork . metric1 - The first metric to be averaged 143420282da2SJoe Wallwork - metric2 - The second metric to be averaged 143520282da2SJoe Wallwork 143620282da2SJoe Wallwork Output Parameter: 143720282da2SJoe Wallwork . metricAvg - The averaged metric 143820282da2SJoe Wallwork 143920282da2SJoe Wallwork Level: beginner 144020282da2SJoe Wallwork 144120282da2SJoe Wallwork .seealso: DMPlexMetricAverage(), DMPlexMetricAverage3() 1442cb7bfe8cSJoe Wallwork @*/ 144320282da2SJoe Wallwork PetscErrorCode DMPlexMetricAverage2(DM dm, Vec metric1, Vec metric2, Vec *metricAvg) 144420282da2SJoe Wallwork { 144520282da2SJoe Wallwork PetscReal weights[2] = {0.5, 0.5}; 144620282da2SJoe Wallwork Vec metrics[2] = {metric1, metric2}; 144720282da2SJoe Wallwork 144820282da2SJoe Wallwork PetscFunctionBegin; 14499566063dSJacob Faibussowitsch PetscCall(DMPlexMetricAverage(dm, 2, weights, metrics, metricAvg)); 145020282da2SJoe Wallwork PetscFunctionReturn(0); 145120282da2SJoe Wallwork } 145220282da2SJoe Wallwork 1453cb7bfe8cSJoe Wallwork /*@ 145420282da2SJoe Wallwork DMPlexMetricAverage3 - Compute the unweighted average of three metrics 145520282da2SJoe Wallwork 1456f1a722f8SMatthew G. Knepley Input Parameters: 145720282da2SJoe Wallwork + dm - The DM 145820282da2SJoe Wallwork . metric1 - The first metric to be averaged 145920282da2SJoe Wallwork . metric2 - The second metric to be averaged 146020282da2SJoe Wallwork - metric3 - The third metric to be averaged 146120282da2SJoe Wallwork 146220282da2SJoe Wallwork Output Parameter: 146320282da2SJoe Wallwork . metricAvg - The averaged metric 146420282da2SJoe Wallwork 146520282da2SJoe Wallwork Level: beginner 146620282da2SJoe Wallwork 146720282da2SJoe Wallwork .seealso: DMPlexMetricAverage(), DMPlexMetricAverage2() 1468cb7bfe8cSJoe Wallwork @*/ 146920282da2SJoe Wallwork PetscErrorCode DMPlexMetricAverage3(DM dm, Vec metric1, Vec metric2, Vec metric3, Vec *metricAvg) 147020282da2SJoe Wallwork { 147120282da2SJoe Wallwork PetscReal weights[3] = {1.0/3.0, 1.0/3.0, 1.0/3.0}; 147220282da2SJoe Wallwork Vec metrics[3] = {metric1, metric2, metric3}; 147320282da2SJoe Wallwork 147420282da2SJoe Wallwork PetscFunctionBegin; 14759566063dSJacob Faibussowitsch PetscCall(DMPlexMetricAverage(dm, 3, weights, metrics, metricAvg)); 147620282da2SJoe Wallwork PetscFunctionReturn(0); 147720282da2SJoe Wallwork } 147820282da2SJoe Wallwork 147920282da2SJoe Wallwork static PetscErrorCode DMPlexMetricIntersection_Private(PetscInt dim, PetscScalar M1[], PetscScalar M2[]) 148020282da2SJoe Wallwork { 148120282da2SJoe Wallwork PetscInt i, j, k, l, m; 148220282da2SJoe Wallwork PetscReal *evals, *evals1; 148320282da2SJoe Wallwork PetscScalar *evecs, *sqrtM1, *isqrtM1; 148420282da2SJoe Wallwork 148520282da2SJoe Wallwork PetscFunctionBegin; 148693520041SJoe Wallwork 148793520041SJoe Wallwork /* Isotropic case */ 148893520041SJoe Wallwork if (dim == 1) { 148993520041SJoe Wallwork M2[0] = (PetscScalar)PetscMin(PetscRealPart(M1[0]), PetscRealPart(M2[0])); 149093520041SJoe Wallwork PetscFunctionReturn(0); 149193520041SJoe Wallwork } 149293520041SJoe Wallwork 149393520041SJoe Wallwork /* Anisotropic case */ 14949566063dSJacob Faibussowitsch PetscCall(PetscMalloc5(dim*dim, &evecs, dim*dim, &sqrtM1, dim*dim, &isqrtM1, dim, &evals, dim, &evals1)); 149520282da2SJoe Wallwork for (i = 0; i < dim; ++i) { 149620282da2SJoe Wallwork for (j = 0; j < dim; ++j) { 149720282da2SJoe Wallwork evecs[i*dim+j] = M1[i*dim+j]; 149820282da2SJoe Wallwork } 149920282da2SJoe Wallwork } 150020282da2SJoe Wallwork { 150120282da2SJoe Wallwork PetscScalar *work; 150220282da2SJoe Wallwork PetscBLASInt lwork; 150320282da2SJoe Wallwork 150420282da2SJoe Wallwork lwork = 5*dim; 15059566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(5*dim, &work)); 150620282da2SJoe Wallwork { 150720282da2SJoe Wallwork PetscBLASInt lierr, nb; 150820282da2SJoe Wallwork PetscReal sqrtk; 150920282da2SJoe Wallwork 151020282da2SJoe Wallwork /* Compute eigendecomposition of M1 */ 15119566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(dim, &nb)); 15129566063dSJacob Faibussowitsch PetscCall(PetscFPTrapPush(PETSC_FP_TRAP_OFF)); 151320282da2SJoe Wallwork #if defined(PETSC_USE_COMPLEX) 151420282da2SJoe Wallwork { 151520282da2SJoe Wallwork PetscReal *rwork; 15169566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(3*dim, &rwork)); 151720282da2SJoe Wallwork PetscStackCallBLAS("LAPACKsyev", LAPACKsyev_("V", "U", &nb, evecs, &nb, evals1, work, &lwork, rwork, &lierr)); 15189566063dSJacob Faibussowitsch PetscCall(PetscFree(rwork)); 151920282da2SJoe Wallwork } 152020282da2SJoe Wallwork #else 152120282da2SJoe Wallwork PetscStackCallBLAS("LAPACKsyev", LAPACKsyev_("V", "U", &nb, evecs, &nb, evals1, work, &lwork, &lierr)); 152220282da2SJoe Wallwork #endif 152382490253SJoe Wallwork if (lierr) { 152482490253SJoe Wallwork LAPACKsyevFail(dim, M1); 152598921bdaSJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_LIB, "Error in LAPACK routine %d", (int) lierr); 152682490253SJoe Wallwork } 15279566063dSJacob Faibussowitsch PetscCall(PetscFPTrapPop()); 152820282da2SJoe Wallwork 152920282da2SJoe Wallwork /* Compute square root and reciprocal */ 153020282da2SJoe Wallwork for (i = 0; i < dim; ++i) { 153120282da2SJoe Wallwork for (j = 0; j < dim; ++j) { 153220282da2SJoe Wallwork sqrtM1[i*dim+j] = 0.0; 153320282da2SJoe Wallwork isqrtM1[i*dim+j] = 0.0; 153420282da2SJoe Wallwork for (k = 0; k < dim; ++k) { 153520282da2SJoe Wallwork sqrtk = PetscSqrtReal(evals1[k]); 153620282da2SJoe Wallwork sqrtM1[i*dim+j] += evecs[k*dim+i] * sqrtk * evecs[k*dim+j]; 153720282da2SJoe Wallwork isqrtM1[i*dim+j] += evecs[k*dim+i] * (1.0/sqrtk) * evecs[k*dim+j]; 153820282da2SJoe Wallwork } 153920282da2SJoe Wallwork } 154020282da2SJoe Wallwork } 154120282da2SJoe Wallwork 154220282da2SJoe Wallwork /* Map into the space spanned by the eigenvectors of M1 */ 154320282da2SJoe Wallwork for (i = 0; i < dim; ++i) { 154420282da2SJoe Wallwork for (j = 0; j < dim; ++j) { 154520282da2SJoe Wallwork evecs[i*dim+j] = 0.0; 154620282da2SJoe Wallwork for (k = 0; k < dim; ++k) { 154720282da2SJoe Wallwork for (l = 0; l < dim; ++l) { 154820282da2SJoe Wallwork evecs[i*dim+j] += isqrtM1[i*dim+k] * M2[l*dim+k] * isqrtM1[j*dim+l]; 154920282da2SJoe Wallwork } 155020282da2SJoe Wallwork } 155120282da2SJoe Wallwork } 155220282da2SJoe Wallwork } 155320282da2SJoe Wallwork 155420282da2SJoe Wallwork /* Compute eigendecomposition */ 15559566063dSJacob Faibussowitsch PetscCall(PetscFPTrapPush(PETSC_FP_TRAP_OFF)); 155620282da2SJoe Wallwork #if defined(PETSC_USE_COMPLEX) 155720282da2SJoe Wallwork { 155820282da2SJoe Wallwork PetscReal *rwork; 15599566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(3*dim, &rwork)); 156020282da2SJoe Wallwork PetscStackCallBLAS("LAPACKsyev", LAPACKsyev_("V", "U", &nb, evecs, &nb, evals, work, &lwork, rwork, &lierr)); 15619566063dSJacob Faibussowitsch PetscCall(PetscFree(rwork)); 156220282da2SJoe Wallwork } 156320282da2SJoe Wallwork #else 156420282da2SJoe Wallwork PetscStackCallBLAS("LAPACKsyev", LAPACKsyev_("V", "U", &nb, evecs, &nb, evals, work, &lwork, &lierr)); 156520282da2SJoe Wallwork #endif 156682490253SJoe Wallwork if (lierr) { 156782490253SJoe Wallwork for (i = 0; i < dim; ++i) { 156882490253SJoe Wallwork for (j = 0; j < dim; ++j) { 156982490253SJoe Wallwork evecs[i*dim+j] = 0.0; 157082490253SJoe Wallwork for (k = 0; k < dim; ++k) { 157182490253SJoe Wallwork for (l = 0; l < dim; ++l) { 157282490253SJoe Wallwork evecs[i*dim+j] += isqrtM1[i*dim+k] * M2[l*dim+k] * isqrtM1[j*dim+l]; 157382490253SJoe Wallwork } 157482490253SJoe Wallwork } 157582490253SJoe Wallwork } 157682490253SJoe Wallwork } 157782490253SJoe Wallwork LAPACKsyevFail(dim, evecs); 157898921bdaSJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_LIB, "Error in LAPACK routine %d", (int) lierr); 157982490253SJoe Wallwork } 15809566063dSJacob Faibussowitsch PetscCall(PetscFPTrapPop()); 158120282da2SJoe Wallwork 158220282da2SJoe Wallwork /* Modify eigenvalues */ 158320282da2SJoe Wallwork for (i = 0; i < dim; ++i) evals[i] = PetscMin(evals[i], evals1[i]); 158420282da2SJoe Wallwork 158520282da2SJoe Wallwork /* Map back to get the intersection */ 158620282da2SJoe Wallwork for (i = 0; i < dim; ++i) { 158720282da2SJoe Wallwork for (j = 0; j < dim; ++j) { 158820282da2SJoe Wallwork M2[i*dim+j] = 0.0; 158920282da2SJoe Wallwork for (k = 0; k < dim; ++k) { 159020282da2SJoe Wallwork for (l = 0; l < dim; ++l) { 159120282da2SJoe Wallwork for (m = 0; m < dim; ++m) { 159220282da2SJoe Wallwork M2[i*dim+j] += sqrtM1[i*dim+k] * evecs[l*dim+k] * evals[l] * evecs[l*dim+m] * sqrtM1[j*dim+m]; 159320282da2SJoe Wallwork } 159420282da2SJoe Wallwork } 159520282da2SJoe Wallwork } 159620282da2SJoe Wallwork } 159720282da2SJoe Wallwork } 159820282da2SJoe Wallwork } 15999566063dSJacob Faibussowitsch PetscCall(PetscFree(work)); 160020282da2SJoe Wallwork } 16019566063dSJacob Faibussowitsch PetscCall(PetscFree5(evecs, sqrtM1, isqrtM1, evals, evals1)); 160220282da2SJoe Wallwork PetscFunctionReturn(0); 160320282da2SJoe Wallwork } 160420282da2SJoe Wallwork 1605cb7bfe8cSJoe Wallwork /*@ 160620282da2SJoe Wallwork DMPlexMetricIntersection - Compute the intersection of a list of metrics 160720282da2SJoe Wallwork 1608f1a722f8SMatthew G. Knepley Input Parameters: 160920282da2SJoe Wallwork + dm - The DM 161020282da2SJoe Wallwork . numMetrics - The number of metrics to be intersected 161120282da2SJoe Wallwork - metrics - The metrics to be intersected 161220282da2SJoe Wallwork 161320282da2SJoe Wallwork Output Parameter: 161420282da2SJoe Wallwork . metricInt - The intersected metric 161520282da2SJoe Wallwork 161620282da2SJoe Wallwork Level: beginner 161720282da2SJoe Wallwork 161820282da2SJoe Wallwork Notes: 161920282da2SJoe Wallwork 162020282da2SJoe Wallwork The intersection of a list of metrics has the maximal ellipsoid which fits within the ellipsoids of the component metrics. 162120282da2SJoe Wallwork 162220282da2SJoe Wallwork The implementation used here is only consistent with the maximal ellipsoid definition in the case numMetrics = 2. 162320282da2SJoe Wallwork 162420282da2SJoe Wallwork .seealso: DMPlexMetricIntersection2(), DMPlexMetricIntersection3(), DMPlexMetricAverage() 1625cb7bfe8cSJoe Wallwork @*/ 162620282da2SJoe Wallwork PetscErrorCode DMPlexMetricIntersection(DM dm, PetscInt numMetrics, Vec metrics[], Vec *metricInt) 162720282da2SJoe Wallwork { 162893520041SJoe Wallwork PetscBool isotropic, uniform; 162993520041SJoe Wallwork PetscInt v, i, m, n; 163093520041SJoe Wallwork PetscScalar *met, *meti; 163120282da2SJoe Wallwork 163220282da2SJoe Wallwork PetscFunctionBegin; 16339566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DMPLEX_MetricIntersection,0,0,0,0)); 163463a3b9bcSJacob Faibussowitsch PetscCheck(numMetrics >= 1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Cannot intersect %" PetscInt_FMT " < 1 metrics", numMetrics); 163520282da2SJoe Wallwork 163620282da2SJoe Wallwork /* Copy over the first metric */ 16379566063dSJacob Faibussowitsch PetscCall(DMPlexMetricCreate(dm, 0, metricInt)); 16389566063dSJacob Faibussowitsch PetscCall(VecCopy(metrics[0], *metricInt)); 163993520041SJoe Wallwork if (numMetrics == 1) PetscFunctionReturn(0); 16409566063dSJacob Faibussowitsch PetscCall(VecGetSize(*metricInt, &m)); 164193520041SJoe Wallwork for (i = 0; i < numMetrics; ++i) { 16429566063dSJacob Faibussowitsch PetscCall(VecGetSize(metrics[i], &n)); 164308401ef6SPierre Jolivet PetscCheck(m == n, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Intersecting different metric types not implemented"); 164493520041SJoe Wallwork } 164520282da2SJoe Wallwork 164620282da2SJoe Wallwork /* Intersect subsequent metrics in turn */ 16479566063dSJacob Faibussowitsch PetscCall(DMPlexMetricIsUniform(dm, &uniform)); 16489566063dSJacob Faibussowitsch PetscCall(DMPlexMetricIsIsotropic(dm, &isotropic)); 164993520041SJoe Wallwork if (uniform) { 165093520041SJoe Wallwork 165193520041SJoe Wallwork /* Uniform case */ 16529566063dSJacob Faibussowitsch PetscCall(VecGetArray(*metricInt, &met)); 165393520041SJoe Wallwork for (i = 1; i < numMetrics; ++i) { 16549566063dSJacob Faibussowitsch PetscCall(VecGetArray(metrics[i], &meti)); 16559566063dSJacob Faibussowitsch PetscCall(DMPlexMetricIntersection_Private(1, meti, met)); 16569566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(metrics[i], &meti)); 165793520041SJoe Wallwork } 16589566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(*metricInt, &met)); 165993520041SJoe Wallwork } else { 166093520041SJoe Wallwork 166193520041SJoe Wallwork /* Spatially varying case */ 166293520041SJoe Wallwork PetscInt dim, vStart, vEnd, nrow; 166393520041SJoe Wallwork PetscScalar *M, *Mi; 166493520041SJoe Wallwork 16659566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 166693520041SJoe Wallwork if (isotropic) nrow = 1; 166793520041SJoe Wallwork else nrow = dim; 16689566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthStratum(dm, 0, &vStart, &vEnd)); 16699566063dSJacob Faibussowitsch PetscCall(VecGetArray(*metricInt, &met)); 167020282da2SJoe Wallwork for (i = 1; i < numMetrics; ++i) { 16719566063dSJacob Faibussowitsch PetscCall(VecGetArray(metrics[i], &meti)); 167220282da2SJoe Wallwork for (v = vStart; v < vEnd; ++v) { 16739566063dSJacob Faibussowitsch PetscCall(DMPlexPointLocalRef(dm, v, met, &M)); 16749566063dSJacob Faibussowitsch PetscCall(DMPlexPointLocalRef(dm, v, meti, &Mi)); 16759566063dSJacob Faibussowitsch PetscCall(DMPlexMetricIntersection_Private(nrow, Mi, M)); 167620282da2SJoe Wallwork } 16779566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(metrics[i], &meti)); 167820282da2SJoe Wallwork } 16799566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(*metricInt, &met)); 168020282da2SJoe Wallwork } 1681fe902aceSJoe Wallwork 16829566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DMPLEX_MetricIntersection,0,0,0,0)); 168320282da2SJoe Wallwork PetscFunctionReturn(0); 168420282da2SJoe Wallwork } 168520282da2SJoe Wallwork 1686cb7bfe8cSJoe Wallwork /*@ 168720282da2SJoe Wallwork DMPlexMetricIntersection2 - Compute the intersection of two metrics 168820282da2SJoe Wallwork 1689f1a722f8SMatthew G. Knepley Input Parameters: 169020282da2SJoe Wallwork + dm - The DM 169120282da2SJoe Wallwork . metric1 - The first metric to be intersected 169220282da2SJoe Wallwork - metric2 - The second metric to be intersected 169320282da2SJoe Wallwork 169420282da2SJoe Wallwork Output Parameter: 169520282da2SJoe Wallwork . metricInt - The intersected metric 169620282da2SJoe Wallwork 169720282da2SJoe Wallwork Level: beginner 169820282da2SJoe Wallwork 169920282da2SJoe Wallwork .seealso: DMPlexMetricIntersection(), DMPlexMetricIntersection3() 1700cb7bfe8cSJoe Wallwork @*/ 170120282da2SJoe Wallwork PetscErrorCode DMPlexMetricIntersection2(DM dm, Vec metric1, Vec metric2, Vec *metricInt) 170220282da2SJoe Wallwork { 170320282da2SJoe Wallwork Vec metrics[2] = {metric1, metric2}; 170420282da2SJoe Wallwork 170520282da2SJoe Wallwork PetscFunctionBegin; 17069566063dSJacob Faibussowitsch PetscCall(DMPlexMetricIntersection(dm, 2, metrics, metricInt)); 170720282da2SJoe Wallwork PetscFunctionReturn(0); 170820282da2SJoe Wallwork } 170920282da2SJoe Wallwork 1710cb7bfe8cSJoe Wallwork /*@ 171120282da2SJoe Wallwork DMPlexMetricIntersection3 - Compute the intersection of three metrics 171220282da2SJoe Wallwork 1713f1a722f8SMatthew G. Knepley Input Parameters: 171420282da2SJoe Wallwork + dm - The DM 171520282da2SJoe Wallwork . metric1 - The first metric to be intersected 171620282da2SJoe Wallwork . metric2 - The second metric to be intersected 171720282da2SJoe Wallwork - metric3 - The third metric to be intersected 171820282da2SJoe Wallwork 171920282da2SJoe Wallwork Output Parameter: 172020282da2SJoe Wallwork . metricInt - The intersected metric 172120282da2SJoe Wallwork 172220282da2SJoe Wallwork Level: beginner 172320282da2SJoe Wallwork 172420282da2SJoe Wallwork .seealso: DMPlexMetricIntersection(), DMPlexMetricIntersection2() 1725cb7bfe8cSJoe Wallwork @*/ 172620282da2SJoe Wallwork PetscErrorCode DMPlexMetricIntersection3(DM dm, Vec metric1, Vec metric2, Vec metric3, Vec *metricInt) 172720282da2SJoe Wallwork { 172820282da2SJoe Wallwork Vec metrics[3] = {metric1, metric2, metric3}; 172920282da2SJoe Wallwork 173020282da2SJoe Wallwork PetscFunctionBegin; 17319566063dSJacob Faibussowitsch PetscCall(DMPlexMetricIntersection(dm, 3, metrics, metricInt)); 173220282da2SJoe Wallwork PetscFunctionReturn(0); 173320282da2SJoe Wallwork } 1734