184961fc4SMatthew G. Knepley #include <petsc-private/dmpleximpl.h> /*I "petscdmplex.h" I*/ 284961fc4SMatthew G. Knepley #include <petscsf.h> 384961fc4SMatthew G. Knepley 484961fc4SMatthew G. Knepley #undef __FUNCT__ 584961fc4SMatthew G. Knepley #define __FUNCT__ "DMPlexReverseCell" 684961fc4SMatthew G. Knepley /*@ 784961fc4SMatthew G. Knepley DMPlexReverseCell - Give a mesh cell the opposite orientation 884961fc4SMatthew G. Knepley 984961fc4SMatthew G. Knepley Input Parameters: 1084961fc4SMatthew G. Knepley + dm - The DM 1184961fc4SMatthew G. Knepley - cell - The cell number 1284961fc4SMatthew G. Knepley 1384961fc4SMatthew G. Knepley Note: The modification of the DM is done in-place. 1484961fc4SMatthew G. Knepley 1584961fc4SMatthew G. Knepley Level: advanced 1684961fc4SMatthew G. Knepley 1784961fc4SMatthew G. Knepley .seealso: DMPlexOrient(), DMCreate(), DMPLEX 1884961fc4SMatthew G. Knepley @*/ 1984961fc4SMatthew G. Knepley PetscErrorCode DMPlexReverseCell(DM dm, PetscInt cell) 2084961fc4SMatthew G. Knepley { 2184961fc4SMatthew G. Knepley /* Note that the reverse orientation ro of a face with orientation o is: 2284961fc4SMatthew G. Knepley 2384961fc4SMatthew G. Knepley ro = o >= 0 ? -(faceSize - o) : faceSize + o 2484961fc4SMatthew G. Knepley 2584961fc4SMatthew G. Knepley where faceSize is the size of the cone for the face. 2684961fc4SMatthew G. Knepley */ 2784961fc4SMatthew G. Knepley const PetscInt *cone, *coneO, *support; 2884961fc4SMatthew G. Knepley PetscInt *revcone, *revconeO; 2984961fc4SMatthew G. Knepley PetscInt maxConeSize, coneSize, supportSize, faceSize, cp, sp; 3084961fc4SMatthew G. Knepley PetscErrorCode ierr; 3184961fc4SMatthew G. Knepley 3284961fc4SMatthew G. Knepley PetscFunctionBegin; 3384961fc4SMatthew G. Knepley ierr = DMPlexGetMaxSizes(dm, &maxConeSize, NULL);CHKERRQ(ierr); 3484961fc4SMatthew G. Knepley ierr = DMGetWorkArray(dm, maxConeSize, PETSC_INT, &revcone);CHKERRQ(ierr); 3584961fc4SMatthew G. Knepley ierr = DMGetWorkArray(dm, maxConeSize, PETSC_INT, &revconeO);CHKERRQ(ierr); 3684961fc4SMatthew G. Knepley /* Reverse cone, and reverse orientations of faces */ 3784961fc4SMatthew G. Knepley ierr = DMPlexGetConeSize(dm, cell, &coneSize);CHKERRQ(ierr); 3884961fc4SMatthew G. Knepley ierr = DMPlexGetCone(dm, cell, &cone);CHKERRQ(ierr); 3984961fc4SMatthew G. Knepley ierr = DMPlexGetConeOrientation(dm, cell, &coneO);CHKERRQ(ierr); 4084961fc4SMatthew G. Knepley for (cp = 0; cp < coneSize; ++cp) { 4184961fc4SMatthew G. Knepley const PetscInt rcp = coneSize-cp-1; 4284961fc4SMatthew G. Knepley 4384961fc4SMatthew G. Knepley ierr = DMPlexGetConeSize(dm, cone[rcp], &faceSize);CHKERRQ(ierr); 4484961fc4SMatthew G. Knepley revcone[cp] = cone[rcp]; 4584961fc4SMatthew G. Knepley revconeO[cp] = coneO[rcp] >= 0 ? -(faceSize-coneO[rcp]) : faceSize+coneO[rcp]; 4684961fc4SMatthew G. Knepley } 4784961fc4SMatthew G. Knepley ierr = DMPlexSetCone(dm, cell, revcone);CHKERRQ(ierr); 4884961fc4SMatthew G. Knepley ierr = DMPlexSetConeOrientation(dm, cell, revconeO);CHKERRQ(ierr); 4984961fc4SMatthew G. Knepley /* Reverse orientation of this cell in the support hypercells */ 5084961fc4SMatthew G. Knepley faceSize = coneSize; 5184961fc4SMatthew G. Knepley ierr = DMPlexGetSupportSize(dm, cell, &supportSize);CHKERRQ(ierr); 5284961fc4SMatthew G. Knepley ierr = DMPlexGetSupport(dm, cell, &support);CHKERRQ(ierr); 5384961fc4SMatthew G. Knepley for (sp = 0; sp < supportSize; ++sp) { 5484961fc4SMatthew G. Knepley ierr = DMPlexGetConeSize(dm, support[sp], &coneSize);CHKERRQ(ierr); 5584961fc4SMatthew G. Knepley ierr = DMPlexGetCone(dm, support[sp], &cone);CHKERRQ(ierr); 5684961fc4SMatthew G. Knepley ierr = DMPlexGetConeOrientation(dm, support[sp], &coneO);CHKERRQ(ierr); 5784961fc4SMatthew G. Knepley for (cp = 0; cp < coneSize; ++cp) { 5884961fc4SMatthew G. Knepley if (cone[cp] != cell) continue; 5984961fc4SMatthew G. Knepley ierr = DMPlexInsertConeOrientation(dm, support[sp], cp, coneO[cp] >= 0 ? -(faceSize-coneO[cp]) : faceSize+coneO[cp]);CHKERRQ(ierr); 6084961fc4SMatthew G. Knepley } 6184961fc4SMatthew G. Knepley } 6284961fc4SMatthew G. Knepley ierr = DMRestoreWorkArray(dm, maxConeSize, PETSC_INT, &revcone);CHKERRQ(ierr); 6384961fc4SMatthew G. Knepley ierr = DMRestoreWorkArray(dm, maxConeSize, PETSC_INT, &revconeO);CHKERRQ(ierr); 6484961fc4SMatthew G. Knepley PetscFunctionReturn(0); 6584961fc4SMatthew G. Knepley } 6684961fc4SMatthew G. Knepley 6784961fc4SMatthew G. Knepley #undef __FUNCT__ 687b310ce2SMatthew G. Knepley #define __FUNCT__ "DMPlexCheckFace_Internal" 697b310ce2SMatthew G. Knepley /* 707b310ce2SMatthew G. Knepley - Checks face match 717b310ce2SMatthew G. Knepley - Flips non-matching 727b310ce2SMatthew G. Knepley - Inserts faces of support cells in FIFO 737b310ce2SMatthew G. Knepley */ 747b2de0fdSMatthew G. Knepley static PetscErrorCode DMPlexCheckFace_Internal(DM dm, PetscInt *faceFIFO, PetscInt *fTop, PetscInt *fBottom, PetscInt cStart, PetscInt fStart, PetscInt fEnd, PetscBT seenCells, PetscBT flippedCells, PetscBT seenFaces) 757b310ce2SMatthew G. Knepley { 767b310ce2SMatthew G. Knepley const PetscInt *support, *coneA, *coneB, *coneOA, *coneOB; 777b310ce2SMatthew G. Knepley PetscInt supportSize, coneSizeA, coneSizeB, posA = -1, posB = -1; 787b2de0fdSMatthew G. Knepley PetscInt face, dim, seenA, flippedA, seenB, flippedB, mismatch, c; 797b310ce2SMatthew G. Knepley PetscErrorCode ierr; 807b310ce2SMatthew G. Knepley 817b310ce2SMatthew G. Knepley PetscFunctionBegin; 827b310ce2SMatthew G. Knepley face = faceFIFO[(*fTop)++]; 837b310ce2SMatthew G. Knepley ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr); 847b310ce2SMatthew G. Knepley ierr = DMPlexGetSupportSize(dm, face, &supportSize);CHKERRQ(ierr); 857b310ce2SMatthew G. Knepley ierr = DMPlexGetSupport(dm, face, &support);CHKERRQ(ierr); 867b310ce2SMatthew G. Knepley if (supportSize < 2) PetscFunctionReturn(0); 877b310ce2SMatthew G. Knepley if (supportSize != 2) SETERRQ1(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Faces should separate only two cells, not %d", supportSize); 887b310ce2SMatthew G. Knepley seenA = PetscBTLookup(seenCells, support[0]-cStart); 897b310ce2SMatthew G. Knepley flippedA = PetscBTLookup(flippedCells, support[0]-cStart) ? 1 : 0; 907b310ce2SMatthew G. Knepley seenB = PetscBTLookup(seenCells, support[1]-cStart); 917b310ce2SMatthew G. Knepley flippedB = PetscBTLookup(flippedCells, support[1]-cStart) ? 1 : 0; 927b310ce2SMatthew G. Knepley 937b310ce2SMatthew G. Knepley ierr = DMPlexGetConeSize(dm, support[0], &coneSizeA);CHKERRQ(ierr); 947b310ce2SMatthew G. Knepley ierr = DMPlexGetConeSize(dm, support[1], &coneSizeB);CHKERRQ(ierr); 957b310ce2SMatthew G. Knepley ierr = DMPlexGetCone(dm, support[0], &coneA);CHKERRQ(ierr); 967b310ce2SMatthew G. Knepley ierr = DMPlexGetCone(dm, support[1], &coneB);CHKERRQ(ierr); 977b310ce2SMatthew G. Knepley ierr = DMPlexGetConeOrientation(dm, support[0], &coneOA);CHKERRQ(ierr); 987b310ce2SMatthew G. Knepley ierr = DMPlexGetConeOrientation(dm, support[1], &coneOB);CHKERRQ(ierr); 997b310ce2SMatthew G. Knepley for (c = 0; c < coneSizeA; ++c) { 1007b310ce2SMatthew G. Knepley if (!PetscBTLookup(seenFaces, coneA[c]-fStart)) { 1017b310ce2SMatthew G. Knepley faceFIFO[(*fBottom)++] = coneA[c]; 1027b310ce2SMatthew G. Knepley ierr = PetscBTSet(seenFaces, coneA[c]-fStart);CHKERRQ(ierr); 1037b310ce2SMatthew G. Knepley } 1047b310ce2SMatthew G. Knepley if (coneA[c] == face) posA = c; 1057b310ce2SMatthew G. Knepley if (*fBottom > fEnd-fStart) SETERRQ3(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Face %d was pushed exceeding capacity %d > %d", coneA[c], *fBottom, fEnd-fStart); 1067b310ce2SMatthew G. Knepley } 1077b310ce2SMatthew G. Knepley if (posA < 0) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Face %d could not be located in cell %d", face, support[0]); 1087b310ce2SMatthew G. Knepley for (c = 0; c < coneSizeB; ++c) { 1097b310ce2SMatthew G. Knepley if (!PetscBTLookup(seenFaces, coneB[c]-fStart)) { 1107b310ce2SMatthew G. Knepley faceFIFO[(*fBottom)++] = coneB[c]; 1117b310ce2SMatthew G. Knepley ierr = PetscBTSet(seenFaces, coneB[c]-fStart);CHKERRQ(ierr); 1127b310ce2SMatthew G. Knepley } 1137b310ce2SMatthew G. Knepley if (coneB[c] == face) posB = c; 1147b310ce2SMatthew G. Knepley if (*fBottom > fEnd-fStart) SETERRQ3(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Face %d was pushed exceeding capacity %d > %d", coneA[c], *fBottom, fEnd-fStart); 1157b310ce2SMatthew G. Knepley } 1167b310ce2SMatthew G. Knepley if (posB < 0) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Face %d could not be located in cell %d", face, support[1]); 1177b310ce2SMatthew G. Knepley 1187b310ce2SMatthew G. Knepley if (dim == 1) { 1197b310ce2SMatthew G. Knepley mismatch = posA == posB; 1207b310ce2SMatthew G. Knepley } else { 1217b310ce2SMatthew G. Knepley mismatch = coneOA[posA] == coneOB[posB]; 1227b310ce2SMatthew G. Knepley } 1237b310ce2SMatthew G. Knepley 1247b310ce2SMatthew G. Knepley if (mismatch ^ (flippedA ^ flippedB)) { 1257b310ce2SMatthew G. Knepley if (seenA && seenB) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Previously seen cells %d and %d do not match: Fault mesh is non-orientable", support[0], support[1]); 1267b310ce2SMatthew G. Knepley if (!seenA && !flippedA) { 1277b310ce2SMatthew G. Knepley ierr = PetscBTSet(flippedCells, support[0]-cStart);CHKERRQ(ierr); 1287b310ce2SMatthew G. Knepley } else if (!seenB && !flippedB) { 1297b310ce2SMatthew G. Knepley ierr = PetscBTSet(flippedCells, support[1]-cStart);CHKERRQ(ierr); 1307b310ce2SMatthew G. Knepley } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Inconsistent mesh orientation: Fault mesh is non-orientable"); 1317b310ce2SMatthew G. Knepley } else if (mismatch && flippedA && flippedB) SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Attempt to flip already flipped cell: Fault mesh is non-orientable"); 1327b310ce2SMatthew G. Knepley ierr = PetscBTSet(seenCells, support[0]-cStart);CHKERRQ(ierr); 1337b310ce2SMatthew G. Knepley ierr = PetscBTSet(seenCells, support[1]-cStart);CHKERRQ(ierr); 1347b310ce2SMatthew G. Knepley PetscFunctionReturn(0); 1357b310ce2SMatthew G. Knepley } 1367b310ce2SMatthew G. Knepley 1377b310ce2SMatthew G. Knepley #undef __FUNCT__ 13884961fc4SMatthew G. Knepley #define __FUNCT__ "DMPlexOrient" 13984961fc4SMatthew G. Knepley /*@ 14084961fc4SMatthew G. Knepley DMPlexOrient - Give a consistent orientation to the input mesh 14184961fc4SMatthew G. Knepley 14284961fc4SMatthew G. Knepley Input Parameters: 14384961fc4SMatthew G. Knepley . dm - The DM 14484961fc4SMatthew G. Knepley 14584961fc4SMatthew G. Knepley Note: The orientation data for the DM are change in-place. 14684961fc4SMatthew G. Knepley $ This routine will fail for non-orientable surfaces, such as the Moebius strip. 14784961fc4SMatthew G. Knepley 14884961fc4SMatthew G. Knepley Level: advanced 14984961fc4SMatthew G. Knepley 15084961fc4SMatthew G. Knepley .seealso: DMCreate(), DMPLEX 15184961fc4SMatthew G. Knepley @*/ 15284961fc4SMatthew G. Knepley PetscErrorCode DMPlexOrient(DM dm) 15384961fc4SMatthew G. Knepley { 15484961fc4SMatthew G. Knepley MPI_Comm comm; 155e1d83109SMatthew G. Knepley PetscSF sf; 156e1d83109SMatthew G. Knepley const PetscInt *lpoints; 157e1d83109SMatthew G. Knepley const PetscSFNode *rpoints; 158e1d83109SMatthew G. Knepley PetscSFNode *rorntComp = NULL, *lorntComp = NULL; 159e1d83109SMatthew G. Knepley PetscInt *numNeighbors, **neighbors; 160e1d83109SMatthew G. Knepley PetscSFNode *nrankComp; 161e1d83109SMatthew G. Knepley PetscBool *match, *flipped; 16284961fc4SMatthew G. Knepley PetscBT seenCells, flippedCells, seenFaces; 163e1d83109SMatthew G. Knepley PetscInt *faceFIFO, fTop, fBottom, *cellComp, *faceComp; 1647cadcfe8SMatthew G. Knepley PetscInt numLeaves, numRoots, dim, h, cStart, cEnd, c, cell, fStart, fEnd, face, off, totNeighbors = 0; 165a83982f3SMatthew G. Knepley PetscMPIInt rank, numComponents, comp = 0; 16684961fc4SMatthew G. Knepley PetscBool flg; 16784961fc4SMatthew G. Knepley PetscErrorCode ierr; 16884961fc4SMatthew G. Knepley 16984961fc4SMatthew G. Knepley PetscFunctionBegin; 17084961fc4SMatthew G. Knepley ierr = PetscObjectGetComm((PetscObject) dm, &comm);CHKERRQ(ierr); 171a83982f3SMatthew G. Knepley ierr = MPI_Comm_rank(comm, &rank);CHKERRQ(ierr); 17284961fc4SMatthew G. Knepley ierr = PetscOptionsHasName(((PetscObject) dm)->prefix, "-orientation_view", &flg);CHKERRQ(ierr); 173e1d83109SMatthew G. Knepley ierr = DMGetPointSF(dm, &sf);CHKERRQ(ierr); 174e1d83109SMatthew G. Knepley ierr = PetscSFGetGraph(sf, &numRoots, &numLeaves, &lpoints, &rpoints);CHKERRQ(ierr); 17584961fc4SMatthew G. Knepley /* Truth Table 17684961fc4SMatthew G. Knepley mismatch flips do action mismatch flipA ^ flipB action 17784961fc4SMatthew G. Knepley F 0 flips no F F F 17884961fc4SMatthew G. Knepley F 1 flip yes F T T 17984961fc4SMatthew G. Knepley F 2 flips no T F T 18084961fc4SMatthew G. Knepley T 0 flips yes T T F 18184961fc4SMatthew G. Knepley T 1 flip no 18284961fc4SMatthew G. Knepley T 2 flips yes 18384961fc4SMatthew G. Knepley */ 18484961fc4SMatthew G. Knepley ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr); 18584961fc4SMatthew G. Knepley ierr = DMPlexGetVTKCellHeight(dm, &h);CHKERRQ(ierr); 18684961fc4SMatthew G. Knepley ierr = DMPlexGetHeightStratum(dm, h, &cStart, &cEnd);CHKERRQ(ierr); 18784961fc4SMatthew G. Knepley ierr = DMPlexGetHeightStratum(dm, h+1, &fStart, &fEnd);CHKERRQ(ierr); 18884961fc4SMatthew G. Knepley ierr = PetscBTCreate(cEnd - cStart, &seenCells);CHKERRQ(ierr); 18984961fc4SMatthew G. Knepley ierr = PetscBTMemzero(cEnd - cStart, seenCells);CHKERRQ(ierr); 19084961fc4SMatthew G. Knepley ierr = PetscBTCreate(cEnd - cStart, &flippedCells);CHKERRQ(ierr); 19184961fc4SMatthew G. Knepley ierr = PetscBTMemzero(cEnd - cStart, flippedCells);CHKERRQ(ierr); 19284961fc4SMatthew G. Knepley ierr = PetscBTCreate(fEnd - fStart, &seenFaces);CHKERRQ(ierr); 19384961fc4SMatthew G. Knepley ierr = PetscBTMemzero(fEnd - fStart, seenFaces);CHKERRQ(ierr); 194e1d83109SMatthew G. Knepley ierr = PetscCalloc3(fEnd - fStart, &faceFIFO, cEnd-cStart, &cellComp, fEnd-fStart, &faceComp);CHKERRQ(ierr); 195e1d83109SMatthew G. Knepley /* 196e1d83109SMatthew G. Knepley OLD STYLE 197e1d83109SMatthew G. Knepley - Add an integer array over cells and faces (component) for connected component number 198e1d83109SMatthew G. Knepley Foreach component 199e1d83109SMatthew G. Knepley - Mark the initial cell as seen 200e1d83109SMatthew G. Knepley - Process component as usual 201e1d83109SMatthew G. Knepley - Set component for all seenCells 202e1d83109SMatthew G. Knepley - Wipe seenCells and seenFaces (flippedCells can stay) 203e1d83109SMatthew G. Knepley - Generate parallel adjacency for component using SF and seenFaces 204e1d83109SMatthew G. Knepley - Collect numComponents adj data from each proc to 0 205e1d83109SMatthew G. Knepley - Build same serial graph 206e1d83109SMatthew G. Knepley - Use same solver 207e1d83109SMatthew G. Knepley - Use Scatterv to to send back flipped flags for each component 208e1d83109SMatthew G. Knepley - Negate flippedCells by component 209e1d83109SMatthew G. Knepley 210e1d83109SMatthew G. Knepley NEW STYLE 211e1d83109SMatthew G. Knepley - Create the adj on each process 212e1d83109SMatthew G. Knepley - Bootstrap to complete graph on proc 0 213e1d83109SMatthew G. Knepley */ 214e1d83109SMatthew G. Knepley /* Loop over components */ 215e1d83109SMatthew G. Knepley for (cell = cStart; cell < cEnd; ++cell) cellComp[cell-cStart] = -1; 216e1d83109SMatthew G. Knepley do { 217e1d83109SMatthew G. Knepley /* Look for first unmarked cell */ 218e1d83109SMatthew G. Knepley for (cell = cStart; cell < cEnd; ++cell) if (cellComp[cell-cStart] < 0) break; 219e1d83109SMatthew G. Knepley if (cell >= cEnd) break; 220e1d83109SMatthew G. Knepley /* Initialize FIFO with first cell in component */ 221e1d83109SMatthew G. Knepley { 22284961fc4SMatthew G. Knepley const PetscInt *cone; 22384961fc4SMatthew G. Knepley PetscInt coneSize; 22484961fc4SMatthew G. Knepley 225e1d83109SMatthew G. Knepley fTop = fBottom = 0; 226e1d83109SMatthew G. Knepley ierr = DMPlexGetConeSize(dm, cell, &coneSize);CHKERRQ(ierr); 227e1d83109SMatthew G. Knepley ierr = DMPlexGetCone(dm, cell, &cone);CHKERRQ(ierr); 22884961fc4SMatthew G. Knepley for (c = 0; c < coneSize; ++c) { 22984961fc4SMatthew G. Knepley faceFIFO[fBottom++] = cone[c]; 23084961fc4SMatthew G. Knepley ierr = PetscBTSet(seenFaces, cone[c]-fStart);CHKERRQ(ierr); 23184961fc4SMatthew G. Knepley } 23231c8331aSMatthew G. Knepley ierr = PetscBTSet(seenCells, cell-cStart);CHKERRQ(ierr); 23384961fc4SMatthew G. Knepley } 23484961fc4SMatthew G. Knepley /* Consider each face in FIFO */ 23584961fc4SMatthew G. Knepley while (fTop < fBottom) { 2367b2de0fdSMatthew G. Knepley ierr = DMPlexCheckFace_Internal(dm, faceFIFO, &fTop, &fBottom, cStart, fStart, fEnd, seenCells, flippedCells, seenFaces);CHKERRQ(ierr); 23784961fc4SMatthew G. Knepley } 238e1d83109SMatthew G. Knepley /* Set component for cells and faces */ 239e1d83109SMatthew G. Knepley for (cell = 0; cell < cEnd-cStart; ++cell) { 240e1d83109SMatthew G. Knepley if (PetscBTLookup(seenCells, cell)) cellComp[cell] = comp; 241e1d83109SMatthew G. Knepley } 242e1d83109SMatthew G. Knepley for (face = 0; face < fEnd-fStart; ++face) { 243e1d83109SMatthew G. Knepley if (PetscBTLookup(seenFaces, face)) faceComp[face] = comp; 244e1d83109SMatthew G. Knepley } 245e1d83109SMatthew G. Knepley /* Wipe seenCells and seenFaces for next component */ 246e1d83109SMatthew G. Knepley ierr = PetscBTMemzero(fEnd - fStart, seenFaces);CHKERRQ(ierr); 247e1d83109SMatthew G. Knepley ierr = PetscBTMemzero(cEnd - cStart, seenCells);CHKERRQ(ierr); 248e1d83109SMatthew G. Knepley ++comp; 249e1d83109SMatthew G. Knepley } while (1); 250e1d83109SMatthew G. Knepley numComponents = comp; 25184961fc4SMatthew G. Knepley if (flg) { 25284961fc4SMatthew G. Knepley PetscViewer v; 25384961fc4SMatthew G. Knepley 2547e09831bSMatthew G. Knepley ierr = PetscViewerASCIIGetStdout(comm, &v);CHKERRQ(ierr); 2557e09831bSMatthew G. Knepley ierr = PetscViewerASCIISynchronizedAllow(v, PETSC_TRUE);CHKERRQ(ierr); 25684961fc4SMatthew G. Knepley ierr = PetscViewerASCIISynchronizedPrintf(v, "[%d]BT for serial flipped cells:\n", rank);CHKERRQ(ierr); 25784961fc4SMatthew G. Knepley ierr = PetscBTView(cEnd-cStart, flippedCells, v);CHKERRQ(ierr); 25884961fc4SMatthew G. Knepley } 25984961fc4SMatthew G. Knepley /* Now all subdomains are oriented, but we need a consistent parallel orientation */ 26084961fc4SMatthew G. Knepley if (numLeaves >= 0) { 261e1d83109SMatthew G. Knepley /* Store orientations of boundary faces*/ 262e1d83109SMatthew G. Knepley ierr = PetscCalloc2(numRoots,&rorntComp,numRoots,&lorntComp);CHKERRQ(ierr); 26384961fc4SMatthew G. Knepley for (face = fStart; face < fEnd; ++face) { 264e1d83109SMatthew G. Knepley const PetscInt *cone, *support, *ornt; 265e1d83109SMatthew G. Knepley PetscInt coneSize, supportSize; 266e1d83109SMatthew G. Knepley 26784961fc4SMatthew G. Knepley ierr = DMPlexGetSupportSize(dm, face, &supportSize);CHKERRQ(ierr); 26884961fc4SMatthew G. Knepley if (supportSize != 1) continue; 26984961fc4SMatthew G. Knepley ierr = DMPlexGetSupport(dm, face, &support);CHKERRQ(ierr); 27084961fc4SMatthew G. Knepley 27184961fc4SMatthew G. Knepley ierr = DMPlexGetCone(dm, support[0], &cone);CHKERRQ(ierr); 27284961fc4SMatthew G. Knepley ierr = DMPlexGetConeSize(dm, support[0], &coneSize);CHKERRQ(ierr); 27384961fc4SMatthew G. Knepley ierr = DMPlexGetConeOrientation(dm, support[0], &ornt);CHKERRQ(ierr); 27484961fc4SMatthew G. Knepley for (c = 0; c < coneSize; ++c) if (cone[c] == face) break; 27584961fc4SMatthew G. Knepley if (dim == 1) { 27684961fc4SMatthew G. Knepley /* Use cone position instead, shifted to -1 or 1 */ 277*6e1eb25cSMatthew G. Knepley if (PetscBTLookup(flippedCells, support[0]-cStart)) rorntComp[face].rank = 1-c*2; 278*6e1eb25cSMatthew G. Knepley else rorntComp[face].rank = c*2-1; 27984961fc4SMatthew G. Knepley } else { 280e1d83109SMatthew G. Knepley if (PetscBTLookup(flippedCells, support[0]-cStart)) rorntComp[face].rank = ornt[c] < 0 ? -1 : 1; 281e1d83109SMatthew G. Knepley else rorntComp[face].rank = ornt[c] < 0 ? 1 : -1; 28284961fc4SMatthew G. Knepley } 283e1d83109SMatthew G. Knepley rorntComp[face].index = faceComp[face-fStart]; 28484961fc4SMatthew G. Knepley } 285e1d83109SMatthew G. Knepley /* Communicate boundary edge orientations */ 286e1d83109SMatthew G. Knepley ierr = PetscSFBcastBegin(sf, MPIU_2INT, rorntComp, lorntComp);CHKERRQ(ierr); 287e1d83109SMatthew G. Knepley ierr = PetscSFBcastEnd(sf, MPIU_2INT, rorntComp, lorntComp);CHKERRQ(ierr); 288e1d83109SMatthew G. Knepley } 289e1d83109SMatthew G. Knepley /* Get process adjacency */ 290e1d83109SMatthew G. Knepley ierr = PetscMalloc2(numComponents, &numNeighbors, numComponents, &neighbors);CHKERRQ(ierr); 291e1d83109SMatthew G. Knepley for (comp = 0; comp < numComponents; ++comp) { 292e1d83109SMatthew G. Knepley PetscInt l, n; 29384961fc4SMatthew G. Knepley 294e1d83109SMatthew G. Knepley numNeighbors[comp] = 0; 29539ea070eSMatthew G. Knepley ierr = PetscMalloc1(PetscMax(numLeaves, 0), &neighbors[comp]);CHKERRQ(ierr); 296e1d83109SMatthew G. Knepley /* I know this is p^2 time in general, but for bounded degree its alright */ 297e1d83109SMatthew G. Knepley for (l = 0; l < numLeaves; ++l) { 298e1d83109SMatthew G. Knepley const PetscInt face = lpoints[l]; 299e1d83109SMatthew G. Knepley 300e1d83109SMatthew G. Knepley /* Find a representative face (edge) separating pairs of procs */ 301e1d83109SMatthew G. Knepley if ((face >= fStart) && (face < fEnd) && (faceComp[face-fStart] == comp)) { 302269a49d5SMatthew G. Knepley const PetscInt rrank = rpoints[l].rank; 303e1d83109SMatthew G. Knepley const PetscInt rcomp = lorntComp[face].index; 304e1d83109SMatthew G. Knepley 305269a49d5SMatthew G. Knepley for (n = 0; n < numNeighbors[comp]; ++n) if ((rrank == rpoints[neighbors[comp][n]].rank) && (rcomp == lorntComp[lpoints[neighbors[comp][n]]].index)) break; 306e1d83109SMatthew G. Knepley if (n >= numNeighbors[comp]) { 307e1d83109SMatthew G. Knepley PetscInt supportSize; 308e1d83109SMatthew G. Knepley 309e1d83109SMatthew G. Knepley ierr = DMPlexGetSupportSize(dm, face, &supportSize);CHKERRQ(ierr); 310e1d83109SMatthew G. Knepley if (supportSize != 1) SETERRQ1(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Boundary faces should see one cell, not %d", supportSize); 311a83982f3SMatthew G. Knepley if (flg) {ierr = PetscPrintf(PETSC_COMM_SELF, "[%d]: component %d, Found representative leaf %d (face %d) connecting to face %d on (%d, %d) with orientation %d\n", rank, comp, l, face, rpoints[l].index, rrank, rcomp, lorntComp[face].rank);CHKERRQ(ierr);} 312e1d83109SMatthew G. Knepley neighbors[comp][numNeighbors[comp]++] = l; 313e1d83109SMatthew G. Knepley } 314e1d83109SMatthew G. Knepley } 315e1d83109SMatthew G. Knepley } 316e1d83109SMatthew G. Knepley totNeighbors += numNeighbors[comp]; 317e1d83109SMatthew G. Knepley } 318e1d83109SMatthew G. Knepley ierr = PetscMalloc2(totNeighbors, &nrankComp, totNeighbors, &match);CHKERRQ(ierr); 319e1d83109SMatthew G. Knepley for (comp = 0, off = 0; comp < numComponents; ++comp) { 320e1d83109SMatthew G. Knepley PetscInt n; 321e1d83109SMatthew G. Knepley 322e1d83109SMatthew G. Knepley for (n = 0; n < numNeighbors[comp]; ++n, ++off) { 323e1d83109SMatthew G. Knepley const PetscInt face = lpoints[neighbors[comp][n]]; 324e1d83109SMatthew G. Knepley const PetscInt o = rorntComp[face].rank*lorntComp[face].rank; 325e1d83109SMatthew G. Knepley 326e1d83109SMatthew G. Knepley if (o < 0) match[off] = PETSC_TRUE; 327e1d83109SMatthew G. Knepley else if (o > 0) match[off] = PETSC_FALSE; 328e1d83109SMatthew G. Knepley else SETERRQ5(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Invalid face %d (%d, %d) neighbor: %d comp: %d", face, rorntComp[face], lorntComp[face], neighbors[comp][n], comp); 329e1d83109SMatthew G. Knepley nrankComp[off].rank = rpoints[neighbors[comp][n]].rank; 330e1d83109SMatthew G. Knepley nrankComp[off].index = lorntComp[lpoints[neighbors[comp][n]]].index; 331e1d83109SMatthew G. Knepley } 332e1d83109SMatthew G. Knepley ierr = PetscFree(neighbors[comp]);CHKERRQ(ierr); 33384961fc4SMatthew G. Knepley } 33484961fc4SMatthew G. Knepley /* Collect the graph on 0 */ 335e1d83109SMatthew G. Knepley if (numLeaves >= 0) { 33684961fc4SMatthew G. Knepley Mat G; 33784961fc4SMatthew G. Knepley PetscBT seenProcs, flippedProcs; 33884961fc4SMatthew G. Knepley PetscInt *procFIFO, pTop, pBottom; 3397cadcfe8SMatthew G. Knepley PetscInt *N = NULL, *Noff; 340e1d83109SMatthew G. Knepley PetscSFNode *adj = NULL; 34184961fc4SMatthew G. Knepley PetscBool *val = NULL; 3427cadcfe8SMatthew G. Knepley PetscMPIInt *recvcounts = NULL, *displs = NULL, *Nc, p, o; 343a83982f3SMatthew G. Knepley PetscMPIInt numProcs = 0; 34484961fc4SMatthew G. Knepley 345e1d83109SMatthew G. Knepley ierr = PetscCalloc1(numComponents, &flipped);CHKERRQ(ierr); 34684961fc4SMatthew G. Knepley if (!rank) {ierr = MPI_Comm_size(comm, &numProcs);CHKERRQ(ierr);} 347e1d83109SMatthew G. Knepley ierr = PetscCalloc4(numProcs, &recvcounts, numProcs+1, &displs, numProcs, &Nc, numProcs+1, &Noff);CHKERRQ(ierr); 348e1d83109SMatthew G. Knepley ierr = MPI_Gather(&numComponents, 1, MPI_INT, Nc, 1, MPI_INT, 0, comm);CHKERRQ(ierr); 34984961fc4SMatthew G. Knepley for (p = 0; p < numProcs; ++p) { 350e1d83109SMatthew G. Knepley displs[p+1] = displs[p] + Nc[p]; 351e1d83109SMatthew G. Knepley } 352e1d83109SMatthew G. Knepley if (!rank) {ierr = PetscMalloc1(displs[numProcs],&N);CHKERRQ(ierr);} 3537cadcfe8SMatthew G. Knepley ierr = MPI_Gatherv(numNeighbors, numComponents, MPIU_INT, N, Nc, displs, MPIU_INT, 0, comm);CHKERRQ(ierr); 354e1d83109SMatthew G. Knepley for (p = 0, o = 0; p < numProcs; ++p) { 355e1d83109SMatthew G. Knepley recvcounts[p] = 0; 356e1d83109SMatthew G. Knepley for (c = 0; c < Nc[p]; ++c, ++o) recvcounts[p] += N[o]; 35784961fc4SMatthew G. Knepley displs[p+1] = displs[p] + recvcounts[p]; 35884961fc4SMatthew G. Knepley } 35984961fc4SMatthew G. Knepley if (!rank) {ierr = PetscMalloc2(displs[numProcs], &adj, displs[numProcs], &val);CHKERRQ(ierr);} 360e1d83109SMatthew G. Knepley ierr = MPI_Gatherv(nrankComp, totNeighbors, MPIU_2INT, adj, recvcounts, displs, MPIU_2INT, 0, comm);CHKERRQ(ierr); 361e1d83109SMatthew G. Knepley ierr = MPI_Gatherv(match, totNeighbors, MPIU_BOOL, val, recvcounts, displs, MPIU_BOOL, 0, comm);CHKERRQ(ierr); 362e1d83109SMatthew G. Knepley ierr = PetscFree2(numNeighbors, neighbors);CHKERRQ(ierr); 363e1d83109SMatthew G. Knepley if (!rank) { 364e1d83109SMatthew G. Knepley for (p = 1; p <= numProcs; ++p) {Noff[p] = Noff[p-1] + Nc[p-1];} 365a83982f3SMatthew G. Knepley if (flg) { 366e1d83109SMatthew G. Knepley PetscInt n; 367e1d83109SMatthew G. Knepley 368e1d83109SMatthew G. Knepley for (p = 0, off = 0; p < numProcs; ++p) { 369e1d83109SMatthew G. Knepley for (c = 0; c < Nc[p]; ++c) { 370e1d83109SMatthew G. Knepley ierr = PetscPrintf(PETSC_COMM_SELF, "Proc %d Comp %d:\n", p, c); 371e1d83109SMatthew G. Knepley for (n = 0; n < N[Noff[p]+c]; ++n, ++off) { 372e1d83109SMatthew G. Knepley ierr = PetscPrintf(PETSC_COMM_SELF, " edge (%d, %d) (%d):\n", adj[off].rank, adj[off].index, val[off]); 373e1d83109SMatthew G. Knepley } 37484961fc4SMatthew G. Knepley } 37584961fc4SMatthew G. Knepley } 37684961fc4SMatthew G. Knepley } 37784961fc4SMatthew G. Knepley /* Symmetrize the graph */ 37884961fc4SMatthew G. Knepley ierr = MatCreate(PETSC_COMM_SELF, &G);CHKERRQ(ierr); 379e1d83109SMatthew G. Knepley ierr = MatSetSizes(G, Noff[numProcs], Noff[numProcs], Noff[numProcs], Noff[numProcs]);CHKERRQ(ierr); 38084961fc4SMatthew G. Knepley ierr = MatSetUp(G);CHKERRQ(ierr); 381e1d83109SMatthew G. Knepley for (p = 0, off = 0; p < numProcs; ++p) { 382e1d83109SMatthew G. Knepley for (c = 0; c < Nc[p]; ++c) { 383e1d83109SMatthew G. Knepley const PetscInt r = Noff[p]+c; 384e1d83109SMatthew G. Knepley PetscInt n; 385e1d83109SMatthew G. Knepley 386e1d83109SMatthew G. Knepley for (n = 0; n < N[r]; ++n, ++off) { 387e1d83109SMatthew G. Knepley const PetscInt q = Noff[adj[off].rank] + adj[off].index; 388e1d83109SMatthew G. Knepley const PetscScalar o = val[off] ? 1.0 : 0.0; 38984961fc4SMatthew G. Knepley 39084961fc4SMatthew G. Knepley ierr = MatSetValues(G, 1, &r, 1, &q, &o, INSERT_VALUES);CHKERRQ(ierr); 39184961fc4SMatthew G. Knepley ierr = MatSetValues(G, 1, &q, 1, &r, &o, INSERT_VALUES);CHKERRQ(ierr); 39284961fc4SMatthew G. Knepley } 39384961fc4SMatthew G. Knepley } 394e1d83109SMatthew G. Knepley } 39584961fc4SMatthew G. Knepley ierr = MatAssemblyBegin(G, MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 39684961fc4SMatthew G. Knepley ierr = MatAssemblyEnd(G, MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 39784961fc4SMatthew G. Knepley 398e1d83109SMatthew G. Knepley ierr = PetscBTCreate(Noff[numProcs], &seenProcs);CHKERRQ(ierr); 399e1d83109SMatthew G. Knepley ierr = PetscBTMemzero(Noff[numProcs], seenProcs);CHKERRQ(ierr); 400e1d83109SMatthew G. Knepley ierr = PetscBTCreate(Noff[numProcs], &flippedProcs);CHKERRQ(ierr); 401e1d83109SMatthew G. Knepley ierr = PetscBTMemzero(Noff[numProcs], flippedProcs);CHKERRQ(ierr); 402e1d83109SMatthew G. Knepley ierr = PetscMalloc1(Noff[numProcs], &procFIFO);CHKERRQ(ierr); 40384961fc4SMatthew G. Knepley pTop = pBottom = 0; 404e1d83109SMatthew G. Knepley for (p = 0; p < Noff[numProcs]; ++p) { 40584961fc4SMatthew G. Knepley if (PetscBTLookup(seenProcs, p)) continue; 40684961fc4SMatthew G. Knepley /* Initialize FIFO with next proc */ 40784961fc4SMatthew G. Knepley procFIFO[pBottom++] = p; 40884961fc4SMatthew G. Knepley ierr = PetscBTSet(seenProcs, p);CHKERRQ(ierr); 40984961fc4SMatthew G. Knepley /* Consider each proc in FIFO */ 41084961fc4SMatthew G. Knepley while (pTop < pBottom) { 41184961fc4SMatthew G. Knepley const PetscScalar *ornt; 41284961fc4SMatthew G. Knepley const PetscInt *neighbors; 413e1d83109SMatthew G. Knepley PetscInt proc, nproc, seen, flippedA, flippedB, mismatch, numNeighbors, n; 41484961fc4SMatthew G. Knepley 41584961fc4SMatthew G. Knepley proc = procFIFO[pTop++]; 41684961fc4SMatthew G. Knepley flippedA = PetscBTLookup(flippedProcs, proc) ? 1 : 0; 41784961fc4SMatthew G. Knepley ierr = MatGetRow(G, proc, &numNeighbors, &neighbors, &ornt);CHKERRQ(ierr); 41884961fc4SMatthew G. Knepley /* Loop over neighboring procs */ 41984961fc4SMatthew G. Knepley for (n = 0; n < numNeighbors; ++n) { 42084961fc4SMatthew G. Knepley nproc = neighbors[n]; 42184961fc4SMatthew G. Knepley mismatch = PetscRealPart(ornt[n]) > 0.5 ? 0 : 1; 42284961fc4SMatthew G. Knepley seen = PetscBTLookup(seenProcs, nproc); 42384961fc4SMatthew G. Knepley flippedB = PetscBTLookup(flippedProcs, nproc) ? 1 : 0; 42484961fc4SMatthew G. Knepley 42584961fc4SMatthew G. Knepley if (mismatch ^ (flippedA ^ flippedB)) { 42684961fc4SMatthew G. Knepley if (seen) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Previously seen procs %d and %d do not match: Fault mesh is non-orientable", proc, nproc); 42784961fc4SMatthew G. Knepley if (!flippedB) { 42884961fc4SMatthew G. Knepley ierr = PetscBTSet(flippedProcs, nproc);CHKERRQ(ierr); 42984961fc4SMatthew G. Knepley } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Inconsistent mesh orientation: Fault mesh is non-orientable"); 43084961fc4SMatthew G. Knepley } else if (mismatch && flippedA && flippedB) SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Attempt to flip already flipped cell: Fault mesh is non-orientable"); 43184961fc4SMatthew G. Knepley if (!seen) { 43284961fc4SMatthew G. Knepley procFIFO[pBottom++] = nproc; 43384961fc4SMatthew G. Knepley ierr = PetscBTSet(seenProcs, nproc);CHKERRQ(ierr); 43484961fc4SMatthew G. Knepley } 43584961fc4SMatthew G. Knepley } 43684961fc4SMatthew G. Knepley } 43784961fc4SMatthew G. Knepley } 43884961fc4SMatthew G. Knepley ierr = PetscFree(procFIFO);CHKERRQ(ierr); 43984961fc4SMatthew G. Knepley ierr = MatDestroy(&G);CHKERRQ(ierr); 44084961fc4SMatthew G. Knepley ierr = PetscFree2(adj, val);CHKERRQ(ierr); 441e1d83109SMatthew G. Knepley ierr = PetscBTDestroy(&seenProcs);CHKERRQ(ierr); 44284961fc4SMatthew G. Knepley } 443e1d83109SMatthew G. Knepley /* Scatter flip flags */ 444e1d83109SMatthew G. Knepley { 445e1d83109SMatthew G. Knepley PetscBool *flips = NULL; 446e1d83109SMatthew G. Knepley 447e1d83109SMatthew G. Knepley if (!rank) { 448e1d83109SMatthew G. Knepley ierr = PetscMalloc1(Noff[numProcs], &flips);CHKERRQ(ierr); 449e1d83109SMatthew G. Knepley for (p = 0; p < Noff[numProcs]; ++p) { 450e1d83109SMatthew G. Knepley flips[p] = PetscBTLookup(flippedProcs, p) ? PETSC_TRUE : PETSC_FALSE; 451a83982f3SMatthew G. Knepley if (flg && flips[p]) {ierr = PetscPrintf(comm, "Flipping Proc+Comp %d:\n", p);} 452e1d83109SMatthew G. Knepley } 453e1d83109SMatthew G. Knepley for (p = 0; p < numProcs; ++p) { 454e1d83109SMatthew G. Knepley displs[p+1] = displs[p] + Nc[p]; 455e1d83109SMatthew G. Knepley } 456e1d83109SMatthew G. Knepley } 457e1d83109SMatthew G. Knepley ierr = MPI_Scatterv(flips, Nc, displs, MPIU_BOOL, flipped, numComponents, MPIU_BOOL, 0, comm);CHKERRQ(ierr); 45884961fc4SMatthew G. Knepley ierr = PetscFree(flips);CHKERRQ(ierr); 45984961fc4SMatthew G. Knepley } 460e1d83109SMatthew G. Knepley if (!rank) {ierr = PetscBTDestroy(&flippedProcs);CHKERRQ(ierr);} 461e1d83109SMatthew G. Knepley ierr = PetscFree(N);CHKERRQ(ierr); 462e1d83109SMatthew G. Knepley ierr = PetscFree4(recvcounts, displs, Nc, Noff);CHKERRQ(ierr); 463e1d83109SMatthew G. Knepley ierr = PetscFree2(nrankComp, match);CHKERRQ(ierr); 464e1d83109SMatthew G. Knepley 465e1d83109SMatthew G. Knepley /* Decide whether to flip cells in each component */ 466e1d83109SMatthew G. Knepley for (c = 0; c < cEnd-cStart; ++c) {if (flipped[cellComp[c]]) {ierr = PetscBTNegate(flippedCells, c);CHKERRQ(ierr);}} 467e1d83109SMatthew G. Knepley ierr = PetscFree(flipped);CHKERRQ(ierr); 46884961fc4SMatthew G. Knepley } 46984961fc4SMatthew G. Knepley if (flg) { 47084961fc4SMatthew G. Knepley PetscViewer v; 47184961fc4SMatthew G. Knepley 4727e09831bSMatthew G. Knepley ierr = PetscViewerASCIIGetStdout(comm, &v);CHKERRQ(ierr); 47384961fc4SMatthew G. Knepley ierr = PetscViewerASCIISynchronizedAllow(v, PETSC_TRUE);CHKERRQ(ierr); 47484961fc4SMatthew G. Knepley ierr = PetscViewerASCIISynchronizedPrintf(v, "[%d]BT for parallel flipped cells:\n", rank);CHKERRQ(ierr); 47584961fc4SMatthew G. Knepley ierr = PetscBTView(cEnd-cStart, flippedCells, v);CHKERRQ(ierr); 47684961fc4SMatthew G. Knepley } 47784961fc4SMatthew G. Knepley /* Reverse flipped cells in the mesh */ 47884961fc4SMatthew G. Knepley for (c = cStart; c < cEnd; ++c) { 47984961fc4SMatthew G. Knepley if (PetscBTLookup(flippedCells, c-cStart)) {ierr = DMPlexReverseCell(dm, c);CHKERRQ(ierr);} 48084961fc4SMatthew G. Knepley } 48184961fc4SMatthew G. Knepley ierr = PetscBTDestroy(&seenCells);CHKERRQ(ierr); 48284961fc4SMatthew G. Knepley ierr = PetscBTDestroy(&flippedCells);CHKERRQ(ierr); 48384961fc4SMatthew G. Knepley ierr = PetscBTDestroy(&seenFaces);CHKERRQ(ierr); 484e1d83109SMatthew G. Knepley ierr = PetscFree2(numNeighbors, neighbors);CHKERRQ(ierr); 485e1d83109SMatthew G. Knepley ierr = PetscFree2(rorntComp, lorntComp);CHKERRQ(ierr); 486e1d83109SMatthew G. Knepley ierr = PetscFree3(faceFIFO, cellComp, faceComp);CHKERRQ(ierr); 48784961fc4SMatthew G. Knepley PetscFunctionReturn(0); 48884961fc4SMatthew G. Knepley } 489