xref: /petsc/src/dm/impls/plex/plexsection.c (revision 697336901c45ac77e1fd620fe1fca906cf3f95c8)
1 #include <petsc/private/dmpleximpl.h> /*I      "petscdmplex.h"   I*/
2 
3 /* Set the number of dof on each point and separate by fields */
4 static PetscErrorCode DMPlexCreateSectionFields(DM dm, const PetscInt numComp[], PetscSection *section)
5 {
6   DMLabel    depthLabel;
7   PetscInt   depth, Nf, f, pStart, pEnd;
8   PetscBool *isFE;
9 
10   PetscFunctionBegin;
11   PetscCall(DMPlexGetDepth(dm, &depth));
12   PetscCall(DMPlexGetDepthLabel(dm, &depthLabel));
13   PetscCall(DMGetNumFields(dm, &Nf));
14   PetscCall(PetscCalloc1(Nf, &isFE));
15   for (f = 0; f < Nf; ++f) {
16     PetscObject  obj;
17     PetscClassId id;
18 
19     PetscCall(DMGetField(dm, f, NULL, &obj));
20     PetscCall(PetscObjectGetClassId(obj, &id));
21     if (id == PETSCFE_CLASSID) {
22       isFE[f] = PETSC_TRUE;
23     } else if (id == PETSCFV_CLASSID) {
24       isFE[f] = PETSC_FALSE;
25     }
26   }
27 
28   PetscCall(PetscSectionCreate(PetscObjectComm((PetscObject)dm), section));
29   if (Nf > 0) {
30     PetscCall(PetscSectionSetNumFields(*section, Nf));
31     if (numComp) {
32       for (f = 0; f < Nf; ++f) {
33         PetscCall(PetscSectionSetFieldComponents(*section, f, numComp[f]));
34         if (isFE[f]) {
35           PetscFE              fe;
36           PetscDualSpace       dspace;
37           const PetscInt    ***perms;
38           const PetscScalar ***flips;
39           const PetscInt      *numDof;
40 
41           PetscCall(DMGetField(dm, f, NULL, (PetscObject *)&fe));
42           PetscCall(PetscFEGetDualSpace(fe, &dspace));
43           PetscCall(PetscDualSpaceGetSymmetries(dspace, &perms, &flips));
44           PetscCall(PetscDualSpaceGetNumDof(dspace, &numDof));
45           if (perms || flips) {
46             DM              K;
47             PetscInt        sph, spdepth;
48             PetscSectionSym sym;
49 
50             PetscCall(PetscDualSpaceGetDM(dspace, &K));
51             PetscCall(DMPlexGetDepth(K, &spdepth));
52             PetscCall(PetscSectionSymCreateLabel(PetscObjectComm((PetscObject)*section), depthLabel, &sym));
53             for (sph = 0; sph <= spdepth; sph++) {
54               PetscDualSpace      hspace;
55               PetscInt            kStart, kEnd;
56               PetscInt            kConeSize, h = sph + (depth - spdepth);
57               const PetscInt    **perms0 = NULL;
58               const PetscScalar **flips0 = NULL;
59 
60               PetscCall(PetscDualSpaceGetHeightSubspace(dspace, sph, &hspace));
61               PetscCall(DMPlexGetHeightStratum(K, h, &kStart, &kEnd));
62               if (!hspace) continue;
63               PetscCall(PetscDualSpaceGetSymmetries(hspace, &perms, &flips));
64               if (perms) perms0 = perms[0];
65               if (flips) flips0 = flips[0];
66               if (!(perms0 || flips0)) continue;
67               {
68                 DMPolytopeType ct;
69                 /* The number of arrangements is no longer based on the number of faces */
70                 PetscCall(DMPlexGetCellType(K, kStart, &ct));
71                 kConeSize = DMPolytopeTypeGetNumArrangments(ct) / 2;
72               }
73               PetscCall(PetscSectionSymLabelSetStratum(sym, depth - h, numDof[depth - h], -kConeSize, kConeSize, PETSC_USE_POINTER, perms0 ? &perms0[-kConeSize] : NULL, flips0 ? &flips0[-kConeSize] : NULL));
74             }
75             PetscCall(PetscSectionSetFieldSym(*section, f, sym));
76             PetscCall(PetscSectionSymDestroy(&sym));
77           }
78         }
79       }
80     }
81   }
82   PetscCall(DMPlexGetChart(dm, &pStart, &pEnd));
83   PetscCall(PetscSectionSetChart(*section, pStart, pEnd));
84   PetscCall(PetscFree(isFE));
85   PetscFunctionReturn(PETSC_SUCCESS);
86 }
87 
88 /* Set the number of dof on each point and separate by fields */
89 static PetscErrorCode DMPlexCreateSectionDof(DM dm, DMLabel label[], const PetscInt numDof[], PetscSection section)
90 {
91   DMLabel        depthLabel;
92   DMPolytopeType ct;
93   PetscInt       depth, cellHeight, pStart = 0, pEnd = 0;
94   PetscInt       Nf, f, Nds, n, dim, d, dep, p;
95   PetscBool     *isFE, hasCohesive = PETSC_FALSE;
96 
97   PetscFunctionBegin;
98   PetscCall(DMGetDimension(dm, &dim));
99   PetscCall(DMPlexGetDepth(dm, &depth));
100   PetscCall(DMPlexGetDepthLabel(dm, &depthLabel));
101   PetscCall(DMGetNumFields(dm, &Nf));
102   PetscCall(DMGetNumDS(dm, &Nds));
103   for (n = 0; n < Nds; ++n) {
104     PetscDS   ds;
105     PetscBool isCohesive;
106 
107     PetscCall(DMGetRegionNumDS(dm, n, NULL, NULL, &ds, NULL));
108     PetscCall(PetscDSIsCohesive(ds, &isCohesive));
109     if (isCohesive) {
110       hasCohesive = PETSC_TRUE;
111       break;
112     }
113   }
114   PetscCall(PetscMalloc1(Nf, &isFE));
115   for (f = 0; f < Nf; ++f) {
116     PetscObject  obj;
117     PetscClassId id;
118 
119     PetscCall(DMGetField(dm, f, NULL, &obj));
120     PetscCall(PetscObjectGetClassId(obj, &id));
121     /* User is allowed to put a "placeholder" field in (c.f. DMCreateDS) */
122     isFE[f] = id == PETSCFE_CLASSID ? PETSC_TRUE : PETSC_FALSE;
123   }
124 
125   PetscCall(DMPlexGetVTKCellHeight(dm, &cellHeight));
126   for (f = 0; f < Nf; ++f) {
127     PetscBool avoidTensor;
128 
129     PetscCall(DMGetFieldAvoidTensor(dm, f, &avoidTensor));
130     avoidTensor = (avoidTensor || hasCohesive) ? PETSC_TRUE : PETSC_FALSE;
131     if (label && label[f]) {
132       IS              pointIS;
133       const PetscInt *points;
134       PetscInt        n;
135 
136       PetscCall(DMLabelGetStratumIS(label[f], 1, &pointIS));
137       if (!pointIS) continue;
138       PetscCall(ISGetLocalSize(pointIS, &n));
139       PetscCall(ISGetIndices(pointIS, &points));
140       for (p = 0; p < n; ++p) {
141         const PetscInt point = points[p];
142         PetscInt       dof, d;
143 
144         PetscCall(DMPlexGetCellType(dm, point, &ct));
145         PetscCall(DMLabelGetValue(depthLabel, point, &d));
146         /* If this is a tensor prism point, use dof for one dimension lower */
147         switch (ct) {
148         case DM_POLYTOPE_POINT_PRISM_TENSOR:
149         case DM_POLYTOPE_SEG_PRISM_TENSOR:
150         case DM_POLYTOPE_TRI_PRISM_TENSOR:
151         case DM_POLYTOPE_QUAD_PRISM_TENSOR:
152           if (hasCohesive) --d;
153           break;
154         default:
155           break;
156         }
157         dof = d < 0 ? 0 : numDof[f * (dim + 1) + d];
158         PetscCall(PetscSectionSetFieldDof(section, point, f, dof));
159         PetscCall(PetscSectionAddDof(section, point, dof));
160       }
161       PetscCall(ISRestoreIndices(pointIS, &points));
162       PetscCall(ISDestroy(&pointIS));
163     } else {
164       for (dep = 0; dep <= depth - cellHeight; ++dep) {
165         /* Cases: dim > depth (cell-vertex mesh), dim == depth (fully interpolated), dim < depth (interpolated submesh) */
166         d = dim <= depth ? dep : (!dep ? 0 : dim);
167         PetscCall(DMPlexGetDepthStratum(dm, dep, &pStart, &pEnd));
168         for (p = pStart; p < pEnd; ++p) {
169           const PetscInt dof = numDof[f * (dim + 1) + d];
170 
171           PetscCall(DMPlexGetCellType(dm, p, &ct));
172           switch (ct) {
173           case DM_POLYTOPE_POINT_PRISM_TENSOR:
174           case DM_POLYTOPE_SEG_PRISM_TENSOR:
175           case DM_POLYTOPE_TRI_PRISM_TENSOR:
176           case DM_POLYTOPE_QUAD_PRISM_TENSOR:
177             if (avoidTensor && isFE[f]) continue;
178           default:
179             break;
180           }
181           PetscCall(PetscSectionSetFieldDof(section, p, f, dof));
182           PetscCall(PetscSectionAddDof(section, p, dof));
183         }
184       }
185     }
186   }
187   PetscCall(PetscFree(isFE));
188   PetscFunctionReturn(PETSC_SUCCESS);
189 }
190 
191 /* Set the number of dof on each point and separate by fields
192    If bcComps is NULL or the IS is NULL, constrain every dof on the point
193 */
194 static PetscErrorCode DMPlexCreateSectionBCDof(DM dm, PetscInt numBC, const PetscInt bcField[], const IS bcComps[], const IS bcPoints[], PetscSection section)
195 {
196   PetscInt     Nf;
197   PetscInt     bc;
198   PetscSection aSec;
199 
200   PetscFunctionBegin;
201   PetscCall(PetscSectionGetNumFields(section, &Nf));
202   for (bc = 0; bc < numBC; ++bc) {
203     PetscInt        field = 0;
204     const PetscInt *comp;
205     const PetscInt *idx;
206     PetscInt        Nc = 0, cNc = -1, n, i;
207 
208     if (Nf) {
209       field = bcField[bc];
210       PetscCall(PetscSectionGetFieldComponents(section, field, &Nc));
211     }
212     if (bcComps && bcComps[bc]) PetscCall(ISGetLocalSize(bcComps[bc], &cNc));
213     if (bcComps && bcComps[bc]) PetscCall(ISGetIndices(bcComps[bc], &comp));
214     if (bcPoints[bc]) {
215       PetscCall(ISGetLocalSize(bcPoints[bc], &n));
216       PetscCall(ISGetIndices(bcPoints[bc], &idx));
217       for (i = 0; i < n; ++i) {
218         const PetscInt p = idx[i];
219         PetscInt       numConst;
220 
221         if (Nf) {
222           PetscCall(PetscSectionGetFieldDof(section, p, field, &numConst));
223         } else {
224           PetscCall(PetscSectionGetDof(section, p, &numConst));
225         }
226         /* If Nc <= 0, constrain every dof on the point */
227         if (cNc > 0) {
228           /* We assume that a point may have multiple "nodes", which are collections of Nc dofs,
229              and that those dofs are numbered n*Nc+c */
230           if (Nf) {
231             PetscCheck(numConst % Nc == 0, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Point %" PetscInt_FMT " has %" PetscInt_FMT " dof which is not divisible by %" PetscInt_FMT " field components", p, numConst, Nc);
232             numConst = (numConst / Nc) * cNc;
233           } else {
234             numConst = PetscMin(numConst, cNc);
235           }
236         }
237         if (Nf) PetscCall(PetscSectionAddFieldConstraintDof(section, p, field, numConst));
238         PetscCall(PetscSectionAddConstraintDof(section, p, numConst));
239       }
240       PetscCall(ISRestoreIndices(bcPoints[bc], &idx));
241     }
242     if (bcComps && bcComps[bc]) PetscCall(ISRestoreIndices(bcComps[bc], &comp));
243   }
244   PetscCall(DMPlexGetAnchors(dm, &aSec, NULL));
245   if (aSec) {
246     PetscInt aStart, aEnd, a;
247 
248     PetscCall(PetscSectionGetChart(aSec, &aStart, &aEnd));
249     for (a = aStart; a < aEnd; a++) {
250       PetscInt dof, f;
251 
252       PetscCall(PetscSectionGetDof(aSec, a, &dof));
253       if (dof) {
254         /* if there are point-to-point constraints, then all dofs are constrained */
255         PetscCall(PetscSectionGetDof(section, a, &dof));
256         PetscCall(PetscSectionSetConstraintDof(section, a, dof));
257         for (f = 0; f < Nf; f++) {
258           PetscCall(PetscSectionGetFieldDof(section, a, f, &dof));
259           PetscCall(PetscSectionSetFieldConstraintDof(section, a, f, dof));
260         }
261       }
262     }
263   }
264   PetscFunctionReturn(PETSC_SUCCESS);
265 }
266 
267 /* Set the constrained field indices on each point
268    If bcComps is NULL or the IS is NULL, constrain every dof on the point
269 */
270 static PetscErrorCode DMPlexCreateSectionBCIndicesField(DM dm, PetscInt numBC, const PetscInt bcField[], const IS bcComps[], const IS bcPoints[], PetscSection section)
271 {
272   PetscSection aSec;
273   PetscInt    *indices;
274   PetscInt     Nf, cdof, maxDof = 0, pStart, pEnd, p, bc, f, d;
275 
276   PetscFunctionBegin;
277   PetscCall(PetscSectionGetNumFields(section, &Nf));
278   if (!Nf) PetscFunctionReturn(PETSC_SUCCESS);
279   /* Initialize all field indices to -1 */
280   PetscCall(PetscSectionGetChart(section, &pStart, &pEnd));
281   for (p = pStart; p < pEnd; ++p) {
282     PetscCall(PetscSectionGetConstraintDof(section, p, &cdof));
283     maxDof = PetscMax(maxDof, cdof);
284   }
285   PetscCall(PetscMalloc1(maxDof, &indices));
286   for (d = 0; d < maxDof; ++d) indices[d] = -1;
287   for (p = pStart; p < pEnd; ++p)
288     for (f = 0; f < Nf; ++f) PetscCall(PetscSectionSetFieldConstraintIndices(section, p, f, indices));
289   /* Handle BC constraints */
290   for (bc = 0; bc < numBC; ++bc) {
291     const PetscInt  field = bcField[bc];
292     const PetscInt *comp, *idx;
293     PetscInt        Nc, cNc = -1, n, i;
294 
295     PetscCall(PetscSectionGetFieldComponents(section, field, &Nc));
296     if (bcComps && bcComps[bc]) PetscCall(ISGetLocalSize(bcComps[bc], &cNc));
297     if (bcComps && bcComps[bc]) PetscCall(ISGetIndices(bcComps[bc], &comp));
298     if (bcPoints[bc]) {
299       PetscCall(ISGetLocalSize(bcPoints[bc], &n));
300       PetscCall(ISGetIndices(bcPoints[bc], &idx));
301       for (i = 0; i < n; ++i) {
302         const PetscInt  p = idx[i];
303         const PetscInt *find;
304         PetscInt        fdof, fcdof, c, j;
305 
306         PetscCall(PetscSectionGetFieldDof(section, p, field, &fdof));
307         if (!fdof) continue;
308         if (cNc < 0) {
309           for (d = 0; d < fdof; ++d) indices[d] = d;
310           fcdof = fdof;
311         } else {
312           /* We assume that a point may have multiple "nodes", which are collections of Nc dofs,
313              and that those dofs are numbered n*Nc+c */
314           PetscCall(PetscSectionGetFieldConstraintDof(section, p, field, &fcdof));
315           PetscCall(PetscSectionGetFieldConstraintIndices(section, p, field, &find));
316           /* Get indices constrained by previous bcs */
317           for (d = 0; d < fcdof; ++d) {
318             if (find[d] < 0) break;
319             indices[d] = find[d];
320           }
321           for (j = 0; j < fdof / Nc; ++j)
322             for (c = 0; c < cNc; ++c) indices[d++] = j * Nc + comp[c];
323           PetscCall(PetscSortRemoveDupsInt(&d, indices));
324           for (c = d; c < fcdof; ++c) indices[c] = -1;
325           fcdof = d;
326         }
327         PetscCall(PetscSectionSetFieldConstraintDof(section, p, field, fcdof));
328         PetscCall(PetscSectionSetFieldConstraintIndices(section, p, field, indices));
329       }
330       PetscCall(ISRestoreIndices(bcPoints[bc], &idx));
331     }
332     if (bcComps && bcComps[bc]) PetscCall(ISRestoreIndices(bcComps[bc], &comp));
333   }
334   /* Handle anchors */
335   PetscCall(DMPlexGetAnchors(dm, &aSec, NULL));
336   if (aSec) {
337     PetscInt aStart, aEnd, a;
338 
339     for (d = 0; d < maxDof; ++d) indices[d] = d;
340     PetscCall(PetscSectionGetChart(aSec, &aStart, &aEnd));
341     for (a = aStart; a < aEnd; a++) {
342       PetscInt dof, f;
343 
344       PetscCall(PetscSectionGetDof(aSec, a, &dof));
345       if (dof) {
346         /* if there are point-to-point constraints, then all dofs are constrained */
347         for (f = 0; f < Nf; f++) PetscCall(PetscSectionSetFieldConstraintIndices(section, a, f, indices));
348       }
349     }
350   }
351   PetscCall(PetscFree(indices));
352   PetscFunctionReturn(PETSC_SUCCESS);
353 }
354 
355 /* Set the constrained indices on each point */
356 static PetscErrorCode DMPlexCreateSectionBCIndices(DM dm, PetscSection section)
357 {
358   PetscInt *indices;
359   PetscInt  Nf, maxDof, pStart, pEnd, p, f, d;
360 
361   PetscFunctionBegin;
362   PetscCall(PetscSectionGetNumFields(section, &Nf));
363   PetscCall(PetscSectionGetMaxDof(section, &maxDof));
364   PetscCall(PetscSectionGetChart(section, &pStart, &pEnd));
365   PetscCall(PetscMalloc1(maxDof, &indices));
366   for (d = 0; d < maxDof; ++d) indices[d] = -1;
367   for (p = pStart; p < pEnd; ++p) {
368     PetscInt cdof, d;
369 
370     PetscCall(PetscSectionGetConstraintDof(section, p, &cdof));
371     if (cdof) {
372       if (Nf) {
373         PetscInt numConst = 0, foff = 0;
374 
375         for (f = 0; f < Nf; ++f) {
376           const PetscInt *find;
377           PetscInt        fcdof, fdof;
378 
379           PetscCall(PetscSectionGetFieldDof(section, p, f, &fdof));
380           PetscCall(PetscSectionGetFieldConstraintDof(section, p, f, &fcdof));
381           /* Change constraint numbering from field component to local dof number */
382           PetscCall(PetscSectionGetFieldConstraintIndices(section, p, f, &find));
383           for (d = 0; d < fcdof; ++d) indices[numConst + d] = find[d] + foff;
384           numConst += fcdof;
385           foff += fdof;
386         }
387         if (cdof != numConst) PetscCall(PetscSectionSetConstraintDof(section, p, numConst));
388       } else {
389         for (d = 0; d < cdof; ++d) indices[d] = d;
390       }
391       PetscCall(PetscSectionSetConstraintIndices(section, p, indices));
392     }
393   }
394   PetscCall(PetscFree(indices));
395   PetscFunctionReturn(PETSC_SUCCESS);
396 }
397 
398 /*@C
399   DMPlexCreateSection - Create a `PetscSection` based upon the dof layout specification provided.
400 
401   Not Collective
402 
403   Input Parameters:
404 + dm       - The `DMPLEX` object
405 . label    - The label indicating the mesh support of each field, or NULL for the whole mesh
406 . numComp  - An array of size numFields that holds the number of components for each field
407 . numDof   - An array of size numFields*(dim+1) which holds the number of dof for each field on a mesh piece of dimension d
408 . numBC    - The number of boundary conditions
409 . bcField  - An array of size numBC giving the field number for each boundary condition
410 . bcComps  - [Optional] An array of size numBC giving an `IS` holding the field components to which each boundary condition applies
411 . bcPoints - An array of size numBC giving an `IS` holding the `DMPLEX` points to which each boundary condition applies
412 - perm     - Optional permutation of the chart, or NULL
413 
414   Output Parameter:
415 . section - The `PetscSection` object
416 
417   Level: developer
418 
419   Notes:
420   numDof[f*(dim+1)+d] gives the number of dof for field f on points of dimension d. For instance, numDof[1] is the
421   number of dof for field 0 on each edge.
422 
423   The chart permutation is the same one set using `PetscSectionSetPermutation()`
424 
425   Developer Notes:
426   This is used by `DMCreateLocalSection()`?
427 
428 .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexCreate()`, `PetscSectionCreate()`, `PetscSectionSetPermutation()`
429 @*/
430 PetscErrorCode DMPlexCreateSection(DM dm, DMLabel label[], const PetscInt numComp[], const PetscInt numDof[], PetscInt numBC, const PetscInt bcField[], const IS bcComps[], const IS bcPoints[], IS perm, PetscSection *section)
431 {
432   PetscSection aSec;
433 
434   PetscFunctionBegin;
435   PetscCall(DMPlexCreateSectionFields(dm, numComp, section));
436   PetscCall(DMPlexCreateSectionDof(dm, label, numDof, *section));
437   PetscCall(DMPlexCreateSectionBCDof(dm, numBC, bcField, bcComps, bcPoints, *section));
438   if (perm) PetscCall(PetscSectionSetPermutation(*section, perm));
439   PetscCall(PetscSectionSetFromOptions(*section));
440   PetscCall(PetscSectionSetUp(*section));
441   PetscCall(DMPlexGetAnchors(dm, &aSec, NULL));
442   if (numBC || aSec) {
443     PetscCall(DMPlexCreateSectionBCIndicesField(dm, numBC, bcField, bcComps, bcPoints, *section));
444     PetscCall(DMPlexCreateSectionBCIndices(dm, *section));
445   }
446   PetscCall(PetscSectionViewFromOptions(*section, NULL, "-section_view"));
447   PetscFunctionReturn(PETSC_SUCCESS);
448 }
449 
450 PetscErrorCode DMCreateLocalSection_Plex(DM dm)
451 {
452   PetscSection section;
453   DMLabel     *labels;
454   IS          *bcPoints, *bcComps;
455   PetscBool   *isFE;
456   PetscInt    *bcFields, *numComp, *numDof;
457   PetscInt     depth, dim, numBC = 0, Nf, Nds, s, bc = 0, f;
458   PetscInt     cStart, cEnd, cEndInterior;
459 
460   PetscFunctionBegin;
461   PetscCall(DMGetNumFields(dm, &Nf));
462   PetscCall(DMGetDimension(dm, &dim));
463   PetscCall(DMPlexGetHeightStratum(dm, 0, &cStart, &cEnd));
464   /* FE and FV boundary conditions are handled slightly differently */
465   PetscCall(PetscMalloc1(Nf, &isFE));
466   for (f = 0; f < Nf; ++f) {
467     PetscObject  obj;
468     PetscClassId id;
469 
470     PetscCall(DMGetField(dm, f, NULL, &obj));
471     PetscCall(PetscObjectGetClassId(obj, &id));
472     if (id == PETSCFE_CLASSID) {
473       isFE[f] = PETSC_TRUE;
474     } else if (id == PETSCFV_CLASSID) {
475       isFE[f] = PETSC_FALSE;
476     } else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, f);
477   }
478   /* Allocate boundary point storage for FEM boundaries */
479   PetscCall(DMGetNumDS(dm, &Nds));
480   for (s = 0; s < Nds; ++s) {
481     PetscDS  dsBC;
482     PetscInt numBd, bd;
483 
484     PetscCall(DMGetRegionNumDS(dm, s, NULL, NULL, &dsBC, NULL));
485     PetscCall(PetscDSGetNumBoundary(dsBC, &numBd));
486     PetscCheck(Nf || !numBd, PetscObjectComm((PetscObject)dm), PETSC_ERR_PLIB, "number of fields is zero and number of boundary conditions is nonzero (this should never happen)");
487     for (bd = 0; bd < numBd; ++bd) {
488       PetscInt                field;
489       DMBoundaryConditionType type;
490       DMLabel                 label;
491 
492       PetscCall(PetscDSGetBoundary(dsBC, bd, NULL, &type, NULL, &label, NULL, NULL, &field, NULL, NULL, NULL, NULL, NULL));
493       if (label && isFE[field] && (type & DM_BC_ESSENTIAL)) ++numBC;
494     }
495   }
496   /* Add ghost cell boundaries for FVM */
497   PetscCall(DMPlexGetCellTypeStratum(dm, DM_POLYTOPE_FV_GHOST, &cEndInterior, NULL));
498   for (f = 0; f < Nf; ++f)
499     if (!isFE[f] && cEndInterior >= 0) ++numBC;
500   PetscCall(PetscCalloc3(numBC, &bcFields, numBC, &bcPoints, numBC, &bcComps));
501   /* Constrain ghost cells for FV */
502   for (f = 0; f < Nf; ++f) {
503     PetscInt *newidx, c;
504 
505     if (isFE[f] || cEndInterior < 0) continue;
506     PetscCall(PetscMalloc1(cEnd - cEndInterior, &newidx));
507     for (c = cEndInterior; c < cEnd; ++c) newidx[c - cEndInterior] = c;
508     bcFields[bc] = f;
509     PetscCall(ISCreateGeneral(PETSC_COMM_SELF, cEnd - cEndInterior, newidx, PETSC_OWN_POINTER, &bcPoints[bc++]));
510   }
511   /* Complete labels for boundary conditions */
512   PetscCall(DMCompleteBCLabels_Internal(dm));
513   /* Handle FEM Dirichlet boundaries */
514   PetscCall(DMGetNumDS(dm, &Nds));
515   for (s = 0; s < Nds; ++s) {
516     PetscDS  dsBC;
517     PetscInt numBd, bd;
518 
519     PetscCall(DMGetRegionNumDS(dm, s, NULL, NULL, &dsBC, NULL));
520     PetscCall(PetscDSGetNumBoundary(dsBC, &numBd));
521     for (bd = 0; bd < numBd; ++bd) {
522       DMLabel                 label;
523       const PetscInt         *comps;
524       const PetscInt         *values;
525       PetscInt                bd2, field, numComps, numValues;
526       DMBoundaryConditionType type;
527       PetscBool               duplicate = PETSC_FALSE;
528 
529       PetscCall(PetscDSGetBoundary(dsBC, bd, NULL, &type, NULL, &label, &numValues, &values, &field, &numComps, &comps, NULL, NULL, NULL));
530       if (!isFE[field] || !label) continue;
531       /* Only want to modify label once */
532       for (bd2 = 0; bd2 < bd; ++bd2) {
533         DMLabel l;
534 
535         PetscCall(PetscDSGetBoundary(dsBC, bd2, NULL, NULL, NULL, &l, NULL, NULL, NULL, NULL, NULL, NULL, NULL, NULL));
536         duplicate = l == label ? PETSC_TRUE : PETSC_FALSE;
537         if (duplicate) break;
538       }
539       /* Filter out cells, if you actually want to constrain cells you need to do things by hand right now */
540       if (type & DM_BC_ESSENTIAL) {
541         PetscInt *newidx;
542         PetscInt  n, newn = 0, p, v;
543 
544         bcFields[bc] = field;
545         if (numComps) PetscCall(ISCreateGeneral(PETSC_COMM_SELF, numComps, comps, PETSC_COPY_VALUES, &bcComps[bc]));
546         for (v = 0; v < numValues; ++v) {
547           IS              tmp;
548           const PetscInt *idx;
549 
550           PetscCall(DMLabelGetStratumIS(label, values[v], &tmp));
551           if (!tmp) continue;
552           PetscCall(ISGetLocalSize(tmp, &n));
553           PetscCall(ISGetIndices(tmp, &idx));
554           if (isFE[field]) {
555             for (p = 0; p < n; ++p)
556               if ((idx[p] < cStart) || (idx[p] >= cEnd)) ++newn;
557           } else {
558             for (p = 0; p < n; ++p)
559               if ((idx[p] >= cStart) || (idx[p] < cEnd)) ++newn;
560           }
561           PetscCall(ISRestoreIndices(tmp, &idx));
562           PetscCall(ISDestroy(&tmp));
563         }
564         PetscCall(PetscMalloc1(newn, &newidx));
565         newn = 0;
566         for (v = 0; v < numValues; ++v) {
567           IS              tmp;
568           const PetscInt *idx;
569 
570           PetscCall(DMLabelGetStratumIS(label, values[v], &tmp));
571           if (!tmp) continue;
572           PetscCall(ISGetLocalSize(tmp, &n));
573           PetscCall(ISGetIndices(tmp, &idx));
574           if (isFE[field]) {
575             for (p = 0; p < n; ++p)
576               if ((idx[p] < cStart) || (idx[p] >= cEnd)) newidx[newn++] = idx[p];
577           } else {
578             for (p = 0; p < n; ++p)
579               if ((idx[p] >= cStart) || (idx[p] < cEnd)) newidx[newn++] = idx[p];
580           }
581           PetscCall(ISRestoreIndices(tmp, &idx));
582           PetscCall(ISDestroy(&tmp));
583         }
584         PetscCall(ISCreateGeneral(PETSC_COMM_SELF, newn, newidx, PETSC_OWN_POINTER, &bcPoints[bc++]));
585       }
586     }
587   }
588   /* Handle discretization */
589   PetscCall(PetscCalloc3(Nf, &labels, Nf, &numComp, Nf * (dim + 1), &numDof));
590   for (f = 0; f < Nf; ++f) {
591     labels[f] = dm->fields[f].label;
592     if (isFE[f]) {
593       PetscFE         fe = (PetscFE)dm->fields[f].disc;
594       const PetscInt *numFieldDof;
595       PetscInt        fedim, d;
596 
597       PetscCall(PetscFEGetNumComponents(fe, &numComp[f]));
598       PetscCall(PetscFEGetNumDof(fe, &numFieldDof));
599       PetscCall(PetscFEGetSpatialDimension(fe, &fedim));
600       for (d = 0; d < PetscMin(dim, fedim) + 1; ++d) numDof[f * (dim + 1) + d] = numFieldDof[d];
601     } else {
602       PetscFV fv = (PetscFV)dm->fields[f].disc;
603 
604       PetscCall(PetscFVGetNumComponents(fv, &numComp[f]));
605       numDof[f * (dim + 1) + dim] = numComp[f];
606     }
607   }
608   PetscCall(DMPlexGetDepth(dm, &depth));
609   for (f = 0; f < Nf; ++f) {
610     PetscInt d;
611     for (d = 1; d < dim; ++d) PetscCheck(numDof[f * (dim + 1) + d] <= 0 || depth >= dim, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Mesh must be interpolated when unknowns are specified on edges or faces.");
612   }
613   PetscCall(DMPlexCreateSection(dm, labels, numComp, numDof, numBC, bcFields, bcComps, bcPoints, NULL, &section));
614   for (f = 0; f < Nf; ++f) {
615     PetscFE     fe;
616     const char *name;
617 
618     PetscCall(DMGetField(dm, f, NULL, (PetscObject *)&fe));
619     if (!((PetscObject)fe)->name) continue;
620     PetscCall(PetscObjectGetName((PetscObject)fe, &name));
621     PetscCall(PetscSectionSetFieldName(section, f, name));
622   }
623   PetscCall(DMSetLocalSection(dm, section));
624   PetscCall(PetscSectionDestroy(&section));
625   for (bc = 0; bc < numBC; ++bc) {
626     PetscCall(ISDestroy(&bcPoints[bc]));
627     PetscCall(ISDestroy(&bcComps[bc]));
628   }
629   PetscCall(PetscFree3(bcFields, bcPoints, bcComps));
630   PetscCall(PetscFree3(labels, numComp, numDof));
631   PetscCall(PetscFree(isFE));
632   PetscFunctionReturn(PETSC_SUCCESS);
633 }
634