1af0996ceSBarry Smith #include <petsc/private/dmpleximpl.h> /*I "petscdmplex.h" I*/
2c58f1c22SToby Isaac #include <petsc/private/dmlabelimpl.h> /*I "petscdmlabel.h" I*/
30c312b8eSJed Brown #include <petscsf.h>
4e6ccafaeSMatthew G Knepley
DMPlexCellIsHybrid_Internal(DM dm,PetscInt p,PetscBool * isHybrid)5d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexCellIsHybrid_Internal(DM dm, PetscInt p, PetscBool *isHybrid)
6d71ae5a4SJacob Faibussowitsch {
7412e9a14SMatthew G. Knepley DMPolytopeType ct;
8412e9a14SMatthew G. Knepley
9412e9a14SMatthew G. Knepley PetscFunctionBegin;
109566063dSJacob Faibussowitsch PetscCall(DMPlexGetCellType(dm, p, &ct));
11412e9a14SMatthew G. Knepley switch (ct) {
12412e9a14SMatthew G. Knepley case DM_POLYTOPE_POINT_PRISM_TENSOR:
13412e9a14SMatthew G. Knepley case DM_POLYTOPE_SEG_PRISM_TENSOR:
14412e9a14SMatthew G. Knepley case DM_POLYTOPE_TRI_PRISM_TENSOR:
15d71ae5a4SJacob Faibussowitsch case DM_POLYTOPE_QUAD_PRISM_TENSOR:
16d71ae5a4SJacob Faibussowitsch *isHybrid = PETSC_TRUE;
17d71ae5a4SJacob Faibussowitsch break;
18d71ae5a4SJacob Faibussowitsch default:
19d71ae5a4SJacob Faibussowitsch *isHybrid = PETSC_FALSE;
20d71ae5a4SJacob Faibussowitsch break;
21412e9a14SMatthew G. Knepley }
223ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS);
23412e9a14SMatthew G. Knepley }
24412e9a14SMatthew G. Knepley
DMPlexGetTensorPrismBounds_Internal(DM dm,PetscInt dim,PetscInt * cStart,PetscInt * cEnd)25d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexGetTensorPrismBounds_Internal(DM dm, PetscInt dim, PetscInt *cStart, PetscInt *cEnd)
26d71ae5a4SJacob Faibussowitsch {
27412e9a14SMatthew G. Knepley DMLabel ctLabel;
28412e9a14SMatthew G. Knepley
29412e9a14SMatthew G. Knepley PetscFunctionBegin;
30412e9a14SMatthew G. Knepley if (cStart) *cStart = -1;
31412e9a14SMatthew G. Knepley if (cEnd) *cEnd = -1;
329566063dSJacob Faibussowitsch PetscCall(DMPlexGetCellTypeLabel(dm, &ctLabel));
33412e9a14SMatthew G. Knepley switch (dim) {
34d71ae5a4SJacob Faibussowitsch case 1:
35d71ae5a4SJacob Faibussowitsch PetscCall(DMLabelGetStratumBounds(ctLabel, DM_POLYTOPE_POINT_PRISM_TENSOR, cStart, cEnd));
36d71ae5a4SJacob Faibussowitsch break;
37d71ae5a4SJacob Faibussowitsch case 2:
38d71ae5a4SJacob Faibussowitsch PetscCall(DMLabelGetStratumBounds(ctLabel, DM_POLYTOPE_SEG_PRISM_TENSOR, cStart, cEnd));
39d71ae5a4SJacob Faibussowitsch break;
40412e9a14SMatthew G. Knepley case 3:
419566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumBounds(ctLabel, DM_POLYTOPE_TRI_PRISM_TENSOR, cStart, cEnd));
429566063dSJacob Faibussowitsch if (*cStart < 0) PetscCall(DMLabelGetStratumBounds(ctLabel, DM_POLYTOPE_QUAD_PRISM_TENSOR, cStart, cEnd));
43412e9a14SMatthew G. Knepley break;
44d71ae5a4SJacob Faibussowitsch default:
453ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS);
46412e9a14SMatthew G. Knepley }
473ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS);
48412e9a14SMatthew G. Knepley }
49412e9a14SMatthew G. Knepley
DMPlexMarkBoundaryFaces_Internal(DM dm,PetscInt val,PetscInt cellHeight,DMLabel label,PetscBool missing_only)5069941377SStefano Zampini PetscErrorCode DMPlexMarkBoundaryFaces_Internal(DM dm, PetscInt val, PetscInt cellHeight, DMLabel label, PetscBool missing_only)
51d71ae5a4SJacob Faibussowitsch {
5269941377SStefano Zampini PetscInt depth, pStart, pEnd, fStart, fEnd, f, supportSize, nroots = -1, nleaves = -1, defval;
53429fa399SMatthew G. Knepley PetscSF sf;
5441e3e744Sksagiyam const PetscSFNode *iremote = NULL;
5541e3e744Sksagiyam const PetscInt *ilocal = NULL;
5641e3e744Sksagiyam PetscInt *leafData;
5730560a7bSMatthew G. Knepley
5830560a7bSMatthew G. Knepley PetscFunctionBegin;
5941e3e744Sksagiyam PetscCall(DMPlexGetChart(dm, &pStart, &pEnd));
6041e3e744Sksagiyam PetscCall(DMPlexGetDepth(dm, &depth));
6141e3e744Sksagiyam if (depth >= cellHeight + 1) {
629566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(dm, cellHeight + 1, &fStart, &fEnd));
6341e3e744Sksagiyam } else {
6441e3e744Sksagiyam /* Note DMPlexGetHeightStratum() returns fStart, fEnd = pStart, pEnd */
6541e3e744Sksagiyam /* if height > depth, which is not what we want here. */
6641e3e744Sksagiyam fStart = 0;
6741e3e744Sksagiyam fEnd = 0;
6841e3e744Sksagiyam }
6969941377SStefano Zampini PetscCall(DMLabelGetDefaultValue(label, &defval));
7041e3e744Sksagiyam PetscCall(PetscCalloc1(pEnd - pStart, &leafData));
718e3a54c0SPierre Jolivet leafData = PetscSafePointerPlusOffset(leafData, -pStart);
7241e3e744Sksagiyam PetscCall(DMGetPointSF(dm, &sf));
7341e3e744Sksagiyam if (sf) PetscCall(PetscSFGetGraph(sf, &nroots, &nleaves, &ilocal, &iremote));
7441e3e744Sksagiyam if (sf && nroots >= 0) {
7541e3e744Sksagiyam PetscInt cStart, cEnd, c, i;
7641e3e744Sksagiyam PetscInt *rootData, *rootData1, *cellOwners, hasTwoSupportCells = -2;
7741e3e744Sksagiyam const PetscInt *support;
7841e3e744Sksagiyam PetscMPIInt rank;
7930560a7bSMatthew G. Knepley
8041e3e744Sksagiyam PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)dm), &rank));
8141e3e744Sksagiyam PetscCall(DMPlexGetHeightStratum(dm, cellHeight, &cStart, &cEnd));
8241e3e744Sksagiyam PetscCall(PetscCalloc3(pEnd - pStart, &rootData, pEnd - pStart, &rootData1, cEnd - cStart, &cellOwners));
8341e3e744Sksagiyam rootData -= pStart;
8441e3e744Sksagiyam rootData1 -= pStart;
85835f2295SStefano Zampini for (c = cStart; c < cEnd; ++c) cellOwners[c - cStart] = rank;
8641e3e744Sksagiyam for (i = 0; i < nleaves; ++i) {
8741e3e744Sksagiyam c = ilocal ? ilocal[i] : i;
8841e3e744Sksagiyam if (c >= cStart && c < cEnd) cellOwners[c - cStart] = iremote[i].rank;
8941e3e744Sksagiyam }
9041e3e744Sksagiyam for (f = fStart; f < fEnd; ++f) {
919566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dm, f, &supportSize));
92e752be1aSMatthew G. Knepley if (supportSize == 1) {
9341e3e744Sksagiyam PetscCall(DMPlexGetSupport(dm, f, &support));
9441e3e744Sksagiyam leafData[f] = cellOwners[support[0] - cStart];
9541e3e744Sksagiyam } else {
9641e3e744Sksagiyam /* TODO: When using DMForest, we could have a parent facet (a coarse facet) */
9741e3e744Sksagiyam /* supportSize of which alone does not tell us if it is an interior */
9841e3e744Sksagiyam /* facet or an exterior facet. Those facets can be identified by checking */
9941e3e744Sksagiyam /* if they are in the parent tree. We should probably skip those parent */
10041e3e744Sksagiyam /* facets here, which will allow for including the following check, and */
10141e3e744Sksagiyam /* see if they are exterior facets or not afterwards by checking if the */
10241e3e744Sksagiyam /* children are exterior or not. */
10341e3e744Sksagiyam /* PetscCheck(supportSize == 2, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid facet support size (%" PetscInt_FMT ") on facet (%" PetscInt_FMT ")", supportSize, f); */
10441e3e744Sksagiyam leafData[f] = hasTwoSupportCells; /* some negative PetscInt */
105429fa399SMatthew G. Knepley }
10641e3e744Sksagiyam rootData[f] = leafData[f];
10741e3e744Sksagiyam rootData1[f] = leafData[f];
10841e3e744Sksagiyam }
10941e3e744Sksagiyam PetscCall(PetscSFReduceBegin(sf, MPIU_INT, leafData, rootData, MPI_MIN));
11041e3e744Sksagiyam PetscCall(PetscSFReduceBegin(sf, MPIU_INT, leafData, rootData1, MPI_MAX));
11141e3e744Sksagiyam PetscCall(PetscSFReduceEnd(sf, MPIU_INT, leafData, rootData, MPI_MIN));
11241e3e744Sksagiyam PetscCall(PetscSFReduceEnd(sf, MPIU_INT, leafData, rootData1, MPI_MAX));
11341e3e744Sksagiyam for (f = fStart; f < fEnd; ++f) {
11441e3e744Sksagiyam /* Store global support size of f. */
11541e3e744Sksagiyam /* Facet f is an interior facet if and only if one of the following two is satisfied: */
11641e3e744Sksagiyam /* 1. supportSize is 2 on some rank. */
11741e3e744Sksagiyam /* 2. supportSize is 1 on any rank that can see f, but f is on a partition boundary; */
11841e3e744Sksagiyam /* i.e., rootData[f] < rootData1[f]. */
11941e3e744Sksagiyam rootData[f] = (rootData[f] == hasTwoSupportCells || (rootData[f] < rootData1[f])) ? 2 : 1;
12041e3e744Sksagiyam leafData[f] = rootData[f];
12141e3e744Sksagiyam }
12241e3e744Sksagiyam PetscCall(PetscSFBcastBegin(sf, MPIU_INT, rootData, leafData, MPI_REPLACE));
12341e3e744Sksagiyam PetscCall(PetscSFBcastEnd(sf, MPIU_INT, rootData, leafData, MPI_REPLACE));
12441e3e744Sksagiyam rootData += pStart;
12541e3e744Sksagiyam rootData1 += pStart;
12641e3e744Sksagiyam PetscCall(PetscFree3(rootData, rootData1, cellOwners));
12741e3e744Sksagiyam } else {
12841e3e744Sksagiyam for (f = fStart; f < fEnd; ++f) {
12941e3e744Sksagiyam PetscCall(DMPlexGetSupportSize(dm, f, &supportSize));
13041e3e744Sksagiyam leafData[f] = supportSize;
13141e3e744Sksagiyam }
13241e3e744Sksagiyam }
13341e3e744Sksagiyam for (f = fStart; f < fEnd; ++f) {
13441e3e744Sksagiyam if (leafData[f] == 1) {
135e752be1aSMatthew G. Knepley if (val < 0) {
136e752be1aSMatthew G. Knepley PetscInt *closure = NULL;
137e752be1aSMatthew G. Knepley PetscInt clSize, cl, cval;
138e752be1aSMatthew G. Knepley
13969941377SStefano Zampini PetscAssert(!missing_only, PETSC_COMM_SELF, PETSC_ERR_SUP, "Not implemented");
1409566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(dm, f, PETSC_TRUE, &clSize, &closure));
141e752be1aSMatthew G. Knepley for (cl = 0; cl < clSize * 2; cl += 2) {
1429566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, closure[cl], &cval));
143e752be1aSMatthew G. Knepley if (cval < 0) continue;
1449566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(label, f, cval));
145e752be1aSMatthew G. Knepley break;
146e752be1aSMatthew G. Knepley }
1479566063dSJacob Faibussowitsch if (cl == clSize * 2) PetscCall(DMLabelSetValue(label, f, 1));
1489566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dm, f, PETSC_TRUE, &clSize, &closure));
149e752be1aSMatthew G. Knepley } else {
15069941377SStefano Zampini if (missing_only) {
15169941377SStefano Zampini PetscInt fval;
15269941377SStefano Zampini PetscCall(DMLabelGetValue(label, f, &fval));
15369941377SStefano Zampini if (fval != defval) PetscCall(DMLabelClearValue(label, f, fval));
15469941377SStefano Zampini else PetscCall(DMLabelSetValue(label, f, val));
15569941377SStefano Zampini } else {
1569566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(label, f, val));
157e752be1aSMatthew G. Knepley }
15869941377SStefano Zampini }
15941e3e744Sksagiyam } else {
16041e3e744Sksagiyam /* TODO: See the above comment on DMForest */
16141e3e744Sksagiyam /* PetscCheck(leafData[f] == 2, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid facet support size (%" PetscInt_FMT ") on facet (%" PetscInt_FMT ")", leafData[f], f); */
162e752be1aSMatthew G. Knepley }
16330560a7bSMatthew G. Knepley }
1648e3a54c0SPierre Jolivet leafData = PetscSafePointerPlusOffset(leafData, pStart);
16541e3e744Sksagiyam PetscCall(PetscFree(leafData));
1663ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS);
16730560a7bSMatthew G. Knepley }
16830560a7bSMatthew G. Knepley
169cd0c2139SMatthew G Knepley /*@
170cd0c2139SMatthew G Knepley DMPlexMarkBoundaryFaces - Mark all faces on the boundary
171cd0c2139SMatthew G Knepley
17241e3e744Sksagiyam Collective
173cd0c2139SMatthew G Knepley
174d8d19677SJose E. Roman Input Parameters:
175429fa399SMatthew G. Knepley + dm - The original `DM`
17620f4b53cSBarry Smith - val - The marker value, or `PETSC_DETERMINE` to use some value in the closure (or 1 if none are found)
177cd0c2139SMatthew G Knepley
178cd0c2139SMatthew G Knepley Output Parameter:
17920f4b53cSBarry Smith . label - The `DMLabel` marking boundary faces with the given value
180429fa399SMatthew G. Knepley
181cd0c2139SMatthew G Knepley Level: developer
182cd0c2139SMatthew G Knepley
18320f4b53cSBarry Smith Note:
18441e3e744Sksagiyam This function will use the point `PetscSF` from the input `DM` and the ownership of the support cells to exclude points on the partition boundary from being marked. If you also wish to mark the partition boundary, you can use `DMSetPointSF()` to temporarily set it to `NULL`, and then reset it to the original object after the call.
18541e3e744Sksagiyam
18641e3e744Sksagiyam In DMForest there can be facets support sizes of which alone can not determine whether they are on the boundary. Currently, this function is not guaranteed to produce the correct result in such case.
18720f4b53cSBarry Smith
1881cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMLabelCreate()`, `DMCreateLabel()`
18909f723d9SJed Brown @*/
DMPlexMarkBoundaryFaces(DM dm,PetscInt val,DMLabel label)190d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexMarkBoundaryFaces(DM dm, PetscInt val, DMLabel label)
191d71ae5a4SJacob Faibussowitsch {
192bbb57e68SMatthew G. Knepley DM plex;
193827c4036SVaclav Hapla DMPlexInterpolatedFlag flg;
194cd0c2139SMatthew G Knepley
195cd0c2139SMatthew G Knepley PetscFunctionBegin;
196827c4036SVaclav Hapla PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
197bbb57e68SMatthew G. Knepley PetscCall(DMConvert(dm, DMPLEX, &plex));
198bbb57e68SMatthew G. Knepley PetscCall(DMPlexIsInterpolated(plex, &flg));
19908401ef6SPierre Jolivet PetscCheck(flg == DMPLEX_INTERPOLATED_FULL, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "DM is not fully interpolated on this rank");
200bbb57e68SMatthew G. Knepley PetscCall(DMPlexMarkBoundaryFaces_Internal(plex, val, 0, label, PETSC_FALSE));
201bbb57e68SMatthew G. Knepley PetscCall(DMDestroy(&plex));
2023ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS);
203cd0c2139SMatthew G Knepley }
204cd0c2139SMatthew G Knepley
DMPlexLabelComplete_Internal(DM dm,DMLabel label,PetscBool completeCells)205d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexLabelComplete_Internal(DM dm, DMLabel label, PetscBool completeCells)
206d71ae5a4SJacob Faibussowitsch {
207b0bf5782SToby Isaac IS valueIS;
208ac51f24eSSander Arens PetscSF sfPoint;
209b0bf5782SToby Isaac const PetscInt *values;
210ac51f24eSSander Arens PetscInt numValues, v, cStart, cEnd, nroots;
211b0bf5782SToby Isaac
212b0bf5782SToby Isaac PetscFunctionBegin;
2139566063dSJacob Faibussowitsch PetscCall(DMLabelGetNumValues(label, &numValues));
2149566063dSJacob Faibussowitsch PetscCall(DMLabelGetValueIS(label, &valueIS));
2159566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(dm, 0, &cStart, &cEnd));
2169566063dSJacob Faibussowitsch PetscCall(ISGetIndices(valueIS, &values));
217b0bf5782SToby Isaac for (v = 0; v < numValues; ++v) {
218b0bf5782SToby Isaac IS pointIS;
219b0bf5782SToby Isaac const PetscInt *points;
220b0bf5782SToby Isaac PetscInt numPoints, p;
221b0bf5782SToby Isaac
2229566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumSize(label, values[v], &numPoints));
2239566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(label, values[v], &pointIS));
2249566063dSJacob Faibussowitsch PetscCall(ISGetIndices(pointIS, &points));
225b0bf5782SToby Isaac for (p = 0; p < numPoints; ++p) {
226b0bf5782SToby Isaac PetscInt q = points[p];
227b0bf5782SToby Isaac PetscInt *closure = NULL;
228b0bf5782SToby Isaac PetscInt closureSize, c;
229b0bf5782SToby Isaac
230b0bf5782SToby Isaac if (cStart <= q && q < cEnd && !completeCells) { /* skip cells */
231b0bf5782SToby Isaac continue;
232b0bf5782SToby Isaac }
2339566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(dm, q, PETSC_TRUE, &closureSize, &closure));
23448a46eb9SPierre Jolivet for (c = 0; c < closureSize * 2; c += 2) PetscCall(DMLabelSetValue(label, closure[c], values[v]));
2359566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dm, q, PETSC_TRUE, &closureSize, &closure));
236b0bf5782SToby Isaac }
2379566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(pointIS, &points));
2389566063dSJacob Faibussowitsch PetscCall(ISDestroy(&pointIS));
239b0bf5782SToby Isaac }
2409566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(valueIS, &values));
2419566063dSJacob Faibussowitsch PetscCall(ISDestroy(&valueIS));
2429566063dSJacob Faibussowitsch PetscCall(DMGetPointSF(dm, &sfPoint));
2439566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(sfPoint, &nroots, NULL, NULL, NULL));
244ac51f24eSSander Arens if (nroots >= 0) {
24526279d81SSanderA DMLabel lblRoots, lblLeaves;
24626279d81SSanderA IS valueIS, pointIS;
24726279d81SSanderA const PetscInt *values;
24826279d81SSanderA PetscInt numValues, v;
24926279d81SSanderA
25026279d81SSanderA /* Pull point contributions from remote leaves into local roots */
2519566063dSJacob Faibussowitsch PetscCall(DMLabelGather(label, sfPoint, &lblLeaves));
2529566063dSJacob Faibussowitsch PetscCall(DMLabelGetValueIS(lblLeaves, &valueIS));
2539566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(valueIS, &numValues));
2549566063dSJacob Faibussowitsch PetscCall(ISGetIndices(valueIS, &values));
25526279d81SSanderA for (v = 0; v < numValues; ++v) {
25626279d81SSanderA const PetscInt value = values[v];
25726279d81SSanderA
2589566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(lblLeaves, value, &pointIS));
2599566063dSJacob Faibussowitsch PetscCall(DMLabelInsertIS(label, pointIS, value));
2609566063dSJacob Faibussowitsch PetscCall(ISDestroy(&pointIS));
26126279d81SSanderA }
2629566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(valueIS, &values));
2639566063dSJacob Faibussowitsch PetscCall(ISDestroy(&valueIS));
2649566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&lblLeaves));
26526279d81SSanderA /* Push point contributions from roots into remote leaves */
2669566063dSJacob Faibussowitsch PetscCall(DMLabelDistribute(label, sfPoint, &lblRoots));
2679566063dSJacob Faibussowitsch PetscCall(DMLabelGetValueIS(lblRoots, &valueIS));
2689566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(valueIS, &numValues));
2699566063dSJacob Faibussowitsch PetscCall(ISGetIndices(valueIS, &values));
27026279d81SSanderA for (v = 0; v < numValues; ++v) {
27126279d81SSanderA const PetscInt value = values[v];
27226279d81SSanderA
2739566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(lblRoots, value, &pointIS));
2749566063dSJacob Faibussowitsch PetscCall(DMLabelInsertIS(label, pointIS, value));
2759566063dSJacob Faibussowitsch PetscCall(ISDestroy(&pointIS));
27626279d81SSanderA }
2779566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(valueIS, &values));
2789566063dSJacob Faibussowitsch PetscCall(ISDestroy(&valueIS));
2799566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&lblRoots));
28026279d81SSanderA }
2813ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS);
282b0bf5782SToby Isaac }
283b0bf5782SToby Isaac
2842be2b188SMatthew G Knepley /*@
28571f1c950SStefano Zampini DMPlexLabelComplete - Starting with a label marking points, we add their transitive closure
2862be2b188SMatthew G Knepley
2872be2b188SMatthew G Knepley Input Parameters:
28820f4b53cSBarry Smith + dm - The `DM`
28971f1c950SStefano Zampini - label - A `DMLabel` marking the points
2902be2b188SMatthew G Knepley
2912be2b188SMatthew G Knepley Output Parameter:
29271f1c950SStefano Zampini . label - A `DMLabel` marking all points in the transitive closure
2932be2b188SMatthew G Knepley
2942be2b188SMatthew G Knepley Level: developer
2952be2b188SMatthew G Knepley
2961cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexLabelCohesiveComplete()`
2972be2b188SMatthew G Knepley @*/
DMPlexLabelComplete(DM dm,DMLabel label)298d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexLabelComplete(DM dm, DMLabel label)
299d71ae5a4SJacob Faibussowitsch {
3002be2b188SMatthew G Knepley PetscFunctionBegin;
3019566063dSJacob Faibussowitsch PetscCall(DMPlexLabelComplete_Internal(dm, label, PETSC_TRUE));
3023ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS);
3032be2b188SMatthew G Knepley }
3042be2b188SMatthew G Knepley
3056cf0e42fSMatthew G. Knepley /*@
306a6e0b375SMatthew G. Knepley DMPlexLabelAddCells - Starting with a label marking points on a surface, we add a cell for each point
3076cf0e42fSMatthew G. Knepley
3086cf0e42fSMatthew G. Knepley Input Parameters:
30920f4b53cSBarry Smith + dm - The `DM`
31020f4b53cSBarry Smith - label - A `DMLabel` marking the surface points
3116cf0e42fSMatthew G. Knepley
3126cf0e42fSMatthew G. Knepley Output Parameter:
31320f4b53cSBarry Smith . label - A `DMLabel` incorporating cells
3146cf0e42fSMatthew G. Knepley
3156cf0e42fSMatthew G. Knepley Level: developer
3166cf0e42fSMatthew G. Knepley
31720f4b53cSBarry Smith Note:
31820f4b53cSBarry Smith The cells allow FEM boundary conditions to be applied using the cell geometry
3196cf0e42fSMatthew G. Knepley
3201cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexLabelAddFaceCells()`, `DMPlexLabelComplete()`, `DMPlexLabelCohesiveComplete()`
3216cf0e42fSMatthew G. Knepley @*/
DMPlexLabelAddCells(DM dm,DMLabel label)322d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexLabelAddCells(DM dm, DMLabel label)
323d71ae5a4SJacob Faibussowitsch {
3246cf0e42fSMatthew G. Knepley IS valueIS;
3256cf0e42fSMatthew G. Knepley const PetscInt *values;
3269df54392SMatthew G. Knepley PetscInt numValues, v, csStart, csEnd, chStart, chEnd;
3276cf0e42fSMatthew G. Knepley
3286cf0e42fSMatthew G. Knepley PetscFunctionBegin;
3299df54392SMatthew G. Knepley PetscCall(DMPlexGetSimplexOrBoxCells(dm, 0, &csStart, &csEnd));
3309df54392SMatthew G. Knepley PetscCall(DMPlexGetHeightStratum(dm, 0, &chStart, &chEnd));
3319566063dSJacob Faibussowitsch PetscCall(DMLabelGetNumValues(label, &numValues));
3329566063dSJacob Faibussowitsch PetscCall(DMLabelGetValueIS(label, &valueIS));
3339566063dSJacob Faibussowitsch PetscCall(ISGetIndices(valueIS, &values));
3346cf0e42fSMatthew G. Knepley for (v = 0; v < numValues; ++v) {
3356cf0e42fSMatthew G. Knepley IS pointIS;
3366cf0e42fSMatthew G. Knepley const PetscInt *points;
3376cf0e42fSMatthew G. Knepley PetscInt numPoints, p;
3386cf0e42fSMatthew G. Knepley
3399566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumSize(label, values[v], &numPoints));
3409566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(label, values[v], &pointIS));
3419566063dSJacob Faibussowitsch PetscCall(ISGetIndices(pointIS, &points));
3426cf0e42fSMatthew G. Knepley for (p = 0; p < numPoints; ++p) {
3439df54392SMatthew G. Knepley const PetscInt point = points[p];
3446cf0e42fSMatthew G. Knepley PetscInt *closure = NULL;
3457bd9760aSJed Brown PetscInt closureSize, cl, h, cStart, cEnd;
3467bd9760aSJed Brown DMPolytopeType ct;
3479df54392SMatthew G. Knepley
3489df54392SMatthew G. Knepley // If the point is a hybrid, allow hybrid cells
3497bd9760aSJed Brown PetscCall(DMPlexGetCellType(dm, point, &ct));
3509df54392SMatthew G. Knepley PetscCall(DMPlexGetPointHeight(dm, point, &h));
3517bd9760aSJed Brown if (DMPolytopeTypeIsHybrid(ct)) {
3529df54392SMatthew G. Knepley cStart = chStart;
3539df54392SMatthew G. Knepley cEnd = chEnd;
3547bd9760aSJed Brown } else {
3557bd9760aSJed Brown cStart = csStart;
3567bd9760aSJed Brown cEnd = csEnd;
3579df54392SMatthew G. Knepley }
3586cf0e42fSMatthew G. Knepley
3599566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(dm, points[p], PETSC_FALSE, &closureSize, &closure));
36022eabd52SMatthew G. Knepley for (cl = closureSize - 1; cl > 0; --cl) {
361a6e0b375SMatthew G. Knepley const PetscInt cell = closure[cl * 2];
362b6555650SPierre Jolivet if (cell >= cStart && cell < cEnd) {
3639371c9d4SSatish Balay PetscCall(DMLabelSetValue(label, cell, values[v]));
3649371c9d4SSatish Balay break;
3659371c9d4SSatish Balay }
36622eabd52SMatthew G. Knepley }
3679566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dm, points[p], PETSC_FALSE, &closureSize, &closure));
3686cf0e42fSMatthew G. Knepley }
3699566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(pointIS, &points));
3709566063dSJacob Faibussowitsch PetscCall(ISDestroy(&pointIS));
3716cf0e42fSMatthew G. Knepley }
3729566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(valueIS, &values));
3739566063dSJacob Faibussowitsch PetscCall(ISDestroy(&valueIS));
3743ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS);
3756cf0e42fSMatthew G. Knepley }
3766cf0e42fSMatthew G. Knepley
377f402d5e4SToby Isaac /*@
378a6e0b375SMatthew G. Knepley DMPlexLabelAddFaceCells - Starting with a label marking faces on a surface, we add a cell for each face
379a6e0b375SMatthew G. Knepley
380a6e0b375SMatthew G. Knepley Input Parameters:
38120f4b53cSBarry Smith + dm - The `DM`
38220f4b53cSBarry Smith - label - A `DMLabel` marking the surface points
383a6e0b375SMatthew G. Knepley
384a6e0b375SMatthew G. Knepley Output Parameter:
38520f4b53cSBarry Smith . label - A `DMLabel` incorporating cells
386a6e0b375SMatthew G. Knepley
387a6e0b375SMatthew G. Knepley Level: developer
388a6e0b375SMatthew G. Knepley
38920f4b53cSBarry Smith Note:
39020f4b53cSBarry Smith The cells allow FEM boundary conditions to be applied using the cell geometry
391a6e0b375SMatthew G. Knepley
3921cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexLabelAddCells()`, `DMPlexLabelComplete()`, `DMPlexLabelCohesiveComplete()`
393a6e0b375SMatthew G. Knepley @*/
DMPlexLabelAddFaceCells(DM dm,DMLabel label)394d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexLabelAddFaceCells(DM dm, DMLabel label)
395d71ae5a4SJacob Faibussowitsch {
396a6e0b375SMatthew G. Knepley IS valueIS;
397a6e0b375SMatthew G. Knepley const PetscInt *values;
398a6e0b375SMatthew G. Knepley PetscInt numValues, v, cStart, cEnd, fStart, fEnd;
399a6e0b375SMatthew G. Knepley
400a6e0b375SMatthew G. Knepley PetscFunctionBegin;
4019566063dSJacob Faibussowitsch PetscCall(DMPlexGetSimplexOrBoxCells(dm, 0, &cStart, &cEnd));
4029566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(dm, 1, &fStart, &fEnd));
4039566063dSJacob Faibussowitsch PetscCall(DMLabelGetNumValues(label, &numValues));
4049566063dSJacob Faibussowitsch PetscCall(DMLabelGetValueIS(label, &valueIS));
4059566063dSJacob Faibussowitsch PetscCall(ISGetIndices(valueIS, &values));
406a6e0b375SMatthew G. Knepley for (v = 0; v < numValues; ++v) {
407a6e0b375SMatthew G. Knepley IS pointIS;
408a6e0b375SMatthew G. Knepley const PetscInt *points;
409a6e0b375SMatthew G. Knepley PetscInt numPoints, p;
410a6e0b375SMatthew G. Knepley
4119566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumSize(label, values[v], &numPoints));
4129566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(label, values[v], &pointIS));
4139566063dSJacob Faibussowitsch PetscCall(ISGetIndices(pointIS, &points));
414a6e0b375SMatthew G. Knepley for (p = 0; p < numPoints; ++p) {
415a6e0b375SMatthew G. Knepley const PetscInt face = points[p];
416a6e0b375SMatthew G. Knepley PetscInt *closure = NULL;
417a6e0b375SMatthew G. Knepley PetscInt closureSize, cl;
418a6e0b375SMatthew G. Knepley
419a6e0b375SMatthew G. Knepley if ((face < fStart) || (face >= fEnd)) continue;
4209566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(dm, face, PETSC_FALSE, &closureSize, &closure));
421a6e0b375SMatthew G. Knepley for (cl = closureSize - 1; cl > 0; --cl) {
422a6e0b375SMatthew G. Knepley const PetscInt cell = closure[cl * 2];
423b6555650SPierre Jolivet if (cell >= cStart && cell < cEnd) {
4249371c9d4SSatish Balay PetscCall(DMLabelSetValue(label, cell, values[v]));
4259371c9d4SSatish Balay break;
4269371c9d4SSatish Balay }
427a6e0b375SMatthew G. Knepley }
4289566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dm, face, PETSC_FALSE, &closureSize, &closure));
429a6e0b375SMatthew G. Knepley }
4309566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(pointIS, &points));
4319566063dSJacob Faibussowitsch PetscCall(ISDestroy(&pointIS));
432a6e0b375SMatthew G. Knepley }
4339566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(valueIS, &values));
4349566063dSJacob Faibussowitsch PetscCall(ISDestroy(&valueIS));
4353ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS);
436a6e0b375SMatthew G. Knepley }
437a6e0b375SMatthew G. Knepley
438a6e0b375SMatthew G. Knepley /*@
439f402d5e4SToby Isaac DMPlexLabelClearCells - Remove cells from a label
440f402d5e4SToby Isaac
441f402d5e4SToby Isaac Input Parameters:
44220f4b53cSBarry Smith + dm - The `DM`
44320f4b53cSBarry Smith - label - A `DMLabel` marking surface points and their adjacent cells
444f402d5e4SToby Isaac
445f402d5e4SToby Isaac Output Parameter:
44620f4b53cSBarry Smith . label - A `DMLabel` without cells
447f402d5e4SToby Isaac
448f402d5e4SToby Isaac Level: developer
449f402d5e4SToby Isaac
45020f4b53cSBarry Smith Note:
45120f4b53cSBarry Smith This undoes `DMPlexLabelAddCells()` or `DMPlexLabelAddFaceCells()`
452f402d5e4SToby Isaac
4531cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexLabelComplete()`, `DMPlexLabelCohesiveComplete()`, `DMPlexLabelAddCells()`
454f402d5e4SToby Isaac @*/
DMPlexLabelClearCells(DM dm,DMLabel label)455d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexLabelClearCells(DM dm, DMLabel label)
456d71ae5a4SJacob Faibussowitsch {
457f402d5e4SToby Isaac IS valueIS;
458f402d5e4SToby Isaac const PetscInt *values;
459485ad865SMatthew G. Knepley PetscInt numValues, v, cStart, cEnd;
460f402d5e4SToby Isaac
461f402d5e4SToby Isaac PetscFunctionBegin;
4629566063dSJacob Faibussowitsch PetscCall(DMPlexGetSimplexOrBoxCells(dm, 0, &cStart, &cEnd));
4639566063dSJacob Faibussowitsch PetscCall(DMLabelGetNumValues(label, &numValues));
4649566063dSJacob Faibussowitsch PetscCall(DMLabelGetValueIS(label, &valueIS));
4659566063dSJacob Faibussowitsch PetscCall(ISGetIndices(valueIS, &values));
466f402d5e4SToby Isaac for (v = 0; v < numValues; ++v) {
467f402d5e4SToby Isaac IS pointIS;
468f402d5e4SToby Isaac const PetscInt *points;
469f402d5e4SToby Isaac PetscInt numPoints, p;
470f402d5e4SToby Isaac
4719566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumSize(label, values[v], &numPoints));
4729566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(label, values[v], &pointIS));
4739566063dSJacob Faibussowitsch PetscCall(ISGetIndices(pointIS, &points));
474f402d5e4SToby Isaac for (p = 0; p < numPoints; ++p) {
475f402d5e4SToby Isaac PetscInt point = points[p];
476f402d5e4SToby Isaac
47748a46eb9SPierre Jolivet if (point >= cStart && point < cEnd) PetscCall(DMLabelClearValue(label, point, values[v]));
478f402d5e4SToby Isaac }
4799566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(pointIS, &points));
4809566063dSJacob Faibussowitsch PetscCall(ISDestroy(&pointIS));
481f402d5e4SToby Isaac }
4829566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(valueIS, &values));
4839566063dSJacob Faibussowitsch PetscCall(ISDestroy(&valueIS));
4843ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS);
485f402d5e4SToby Isaac }
486f402d5e4SToby Isaac
48759eef20bSToby Isaac /* take (oldEnd, added) pairs, ordered by height and convert them to (oldstart, newstart) pairs, ordered by ascending
48859eef20bSToby Isaac * index (skipping first, which is (0,0)) */
DMPlexShiftPointSetUp_Internal(PetscInt depth,PetscInt depthShift[])489d71ae5a4SJacob Faibussowitsch static inline PetscErrorCode DMPlexShiftPointSetUp_Internal(PetscInt depth, PetscInt depthShift[])
490d71ae5a4SJacob Faibussowitsch {
4912582d50cSToby Isaac PetscInt d, off = 0;
4922582d50cSToby Isaac
4932582d50cSToby Isaac PetscFunctionBegin;
49459eef20bSToby Isaac /* sort by (oldend): yes this is an O(n^2) sort, we expect depth <= 3 */
4950974a383SToby Isaac for (d = 0; d < depth; d++) {
4962582d50cSToby Isaac PetscInt firstd = d;
4970974a383SToby Isaac PetscInt firstStart = depthShift[2 * d];
4982582d50cSToby Isaac PetscInt e;
4992582d50cSToby Isaac
5002582d50cSToby Isaac for (e = d + 1; e <= depth; e++) {
5012582d50cSToby Isaac if (depthShift[2 * e] < firstStart) {
5022582d50cSToby Isaac firstd = e;
5032582d50cSToby Isaac firstStart = depthShift[2 * d];
5042582d50cSToby Isaac }
5052582d50cSToby Isaac }
5062582d50cSToby Isaac if (firstd != d) {
5072582d50cSToby Isaac PetscInt swap[2];
5082582d50cSToby Isaac
5092582d50cSToby Isaac e = firstd;
5102582d50cSToby Isaac swap[0] = depthShift[2 * d];
5112582d50cSToby Isaac swap[1] = depthShift[2 * d + 1];
5122582d50cSToby Isaac depthShift[2 * d] = depthShift[2 * e];
5132582d50cSToby Isaac depthShift[2 * d + 1] = depthShift[2 * e + 1];
5142582d50cSToby Isaac depthShift[2 * e] = swap[0];
5152582d50cSToby Isaac depthShift[2 * e + 1] = swap[1];
5162582d50cSToby Isaac }
5172582d50cSToby Isaac }
5182582d50cSToby Isaac /* convert (oldstart, added) to (oldstart, newstart) */
5190974a383SToby Isaac for (d = 0; d <= depth; d++) {
5202582d50cSToby Isaac off += depthShift[2 * d + 1];
52159eef20bSToby Isaac depthShift[2 * d + 1] = depthShift[2 * d] + off;
5222582d50cSToby Isaac }
5233ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS);
5242582d50cSToby Isaac }
5252582d50cSToby Isaac
5262582d50cSToby Isaac /* depthShift is a list of (old, new) pairs */
DMPlexShiftPoint_Internal(PetscInt p,PetscInt depth,PetscInt depthShift[])527d71ae5a4SJacob Faibussowitsch static inline PetscInt DMPlexShiftPoint_Internal(PetscInt p, PetscInt depth, PetscInt depthShift[])
528d71ae5a4SJacob Faibussowitsch {
5292582d50cSToby Isaac PetscInt d;
5302582d50cSToby Isaac PetscInt newOff = 0;
5312582d50cSToby Isaac
5322582d50cSToby Isaac for (d = 0; d <= depth; d++) {
5332582d50cSToby Isaac if (p < depthShift[2 * d]) return p + newOff;
5342582d50cSToby Isaac else newOff = depthShift[2 * d + 1] - depthShift[2 * d];
5352582d50cSToby Isaac }
5360974a383SToby Isaac return p + newOff;
5372582d50cSToby Isaac }
5382582d50cSToby Isaac
5392582d50cSToby Isaac /* depthShift is a list of (old, new) pairs */
DMPlexShiftPointInverse_Internal(PetscInt p,PetscInt depth,PetscInt depthShift[])540d71ae5a4SJacob Faibussowitsch static inline PetscInt DMPlexShiftPointInverse_Internal(PetscInt p, PetscInt depth, PetscInt depthShift[])
541d71ae5a4SJacob Faibussowitsch {
5422582d50cSToby Isaac PetscInt d;
5432582d50cSToby Isaac PetscInt newOff = 0;
5442582d50cSToby Isaac
5452582d50cSToby Isaac for (d = 0; d <= depth; d++) {
5462582d50cSToby Isaac if (p < depthShift[2 * d + 1]) return p + newOff;
5472582d50cSToby Isaac else newOff = depthShift[2 * d] - depthShift[2 * d + 1];
5482582d50cSToby Isaac }
5490974a383SToby Isaac return p + newOff;
550cd0c2139SMatthew G Knepley }
551cd0c2139SMatthew G Knepley
DMPlexShiftSizes_Internal(DM dm,PetscInt depthShift[],DM dmNew)552d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexShiftSizes_Internal(DM dm, PetscInt depthShift[], DM dmNew)
553d71ae5a4SJacob Faibussowitsch {
554cd0c2139SMatthew G Knepley PetscInt depth = 0, d, pStart, pEnd, p;
555fa8e8ae5SToby Isaac DMLabel depthLabel;
556cd0c2139SMatthew G Knepley
557cd0c2139SMatthew G Knepley PetscFunctionBegin;
5589566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepth(dm, &depth));
5593ba16761SJacob Faibussowitsch if (depth < 0) PetscFunctionReturn(PETSC_SUCCESS);
560cd0c2139SMatthew G Knepley /* Step 1: Expand chart */
5619566063dSJacob Faibussowitsch PetscCall(DMPlexGetChart(dm, &pStart, &pEnd));
5620974a383SToby Isaac pEnd = DMPlexShiftPoint_Internal(pEnd, depth, depthShift);
5639566063dSJacob Faibussowitsch PetscCall(DMPlexSetChart(dmNew, pStart, pEnd));
5649566063dSJacob Faibussowitsch PetscCall(DMCreateLabel(dmNew, "depth"));
5659566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthLabel(dmNew, &depthLabel));
5669566063dSJacob Faibussowitsch PetscCall(DMCreateLabel(dmNew, "celltype"));
567cd0c2139SMatthew G Knepley /* Step 2: Set cone and support sizes */
568cd0c2139SMatthew G Knepley for (d = 0; d <= depth; ++d) {
569fa8e8ae5SToby Isaac PetscInt pStartNew, pEndNew;
570fa8e8ae5SToby Isaac IS pIS;
571fa8e8ae5SToby Isaac
5729566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthStratum(dm, d, &pStart, &pEnd));
573fa8e8ae5SToby Isaac pStartNew = DMPlexShiftPoint_Internal(pStart, depth, depthShift);
574fa8e8ae5SToby Isaac pEndNew = DMPlexShiftPoint_Internal(pEnd, depth, depthShift);
5759566063dSJacob Faibussowitsch PetscCall(ISCreateStride(PETSC_COMM_SELF, pEndNew - pStartNew, pStartNew, 1, &pIS));
5769566063dSJacob Faibussowitsch PetscCall(DMLabelSetStratumIS(depthLabel, d, pIS));
5779566063dSJacob Faibussowitsch PetscCall(ISDestroy(&pIS));
578cd0c2139SMatthew G Knepley for (p = pStart; p < pEnd; ++p) {
5792582d50cSToby Isaac PetscInt newp = DMPlexShiftPoint_Internal(p, depth, depthShift);
580cd0c2139SMatthew G Knepley PetscInt size;
581412e9a14SMatthew G. Knepley DMPolytopeType ct;
582cd0c2139SMatthew G Knepley
5839566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, p, &size));
5849566063dSJacob Faibussowitsch PetscCall(DMPlexSetConeSize(dmNew, newp, size));
5859566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dm, p, &size));
5869566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupportSize(dmNew, newp, size));
5879566063dSJacob Faibussowitsch PetscCall(DMPlexGetCellType(dm, p, &ct));
5889566063dSJacob Faibussowitsch PetscCall(DMPlexSetCellType(dmNew, newp, ct));
589cd0c2139SMatthew G Knepley }
590cd0c2139SMatthew G Knepley }
5913ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS);
592cd0c2139SMatthew G Knepley }
593cd0c2139SMatthew G Knepley
DMPlexShiftPoints_Internal(DM dm,PetscInt depthShift[],DM dmNew)594d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexShiftPoints_Internal(DM dm, PetscInt depthShift[], DM dmNew)
595d71ae5a4SJacob Faibussowitsch {
5962582d50cSToby Isaac PetscInt *newpoints;
5972582d50cSToby Isaac PetscInt depth = 0, maxConeSize, maxSupportSize, maxConeSizeNew, maxSupportSizeNew, pStart, pEnd, p;
598cd0c2139SMatthew G Knepley
599cd0c2139SMatthew G Knepley PetscFunctionBegin;
6009566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepth(dm, &depth));
6013ba16761SJacob Faibussowitsch if (depth < 0) PetscFunctionReturn(PETSC_SUCCESS);
6029566063dSJacob Faibussowitsch PetscCall(DMPlexGetMaxSizes(dm, &maxConeSize, &maxSupportSize));
6039566063dSJacob Faibussowitsch PetscCall(DMPlexGetMaxSizes(dmNew, &maxConeSizeNew, &maxSupportSizeNew));
6049566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(PetscMax(PetscMax(maxConeSize, maxSupportSize), PetscMax(maxConeSizeNew, maxSupportSizeNew)), &newpoints));
605cd0c2139SMatthew G Knepley /* Step 5: Set cones and supports */
6069566063dSJacob Faibussowitsch PetscCall(DMPlexGetChart(dm, &pStart, &pEnd));
607cd0c2139SMatthew G Knepley for (p = pStart; p < pEnd; ++p) {
608cd0c2139SMatthew G Knepley const PetscInt *points = NULL, *orientations = NULL;
6092582d50cSToby Isaac PetscInt size, sizeNew, i, newp = DMPlexShiftPoint_Internal(p, depth, depthShift);
610cd0c2139SMatthew G Knepley
6119566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, p, &size));
6129566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, p, &points));
6139566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeOrientation(dm, p, &orientations));
614ad540459SPierre Jolivet for (i = 0; i < size; ++i) newpoints[i] = DMPlexShiftPoint_Internal(points[i], depth, depthShift);
6159566063dSJacob Faibussowitsch PetscCall(DMPlexSetCone(dmNew, newp, newpoints));
6169566063dSJacob Faibussowitsch PetscCall(DMPlexSetConeOrientation(dmNew, newp, orientations));
6179566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dm, p, &size));
6189566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dmNew, newp, &sizeNew));
6199566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(dm, p, &points));
620ad540459SPierre Jolivet for (i = 0; i < size; ++i) newpoints[i] = DMPlexShiftPoint_Internal(points[i], depth, depthShift);
621dcbb62e8SMatthew G. Knepley for (i = size; i < sizeNew; ++i) newpoints[i] = 0;
6229566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupport(dmNew, newp, newpoints));
623cd0c2139SMatthew G Knepley }
6249566063dSJacob Faibussowitsch PetscCall(PetscFree(newpoints));
6253ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS);
626cd0c2139SMatthew G Knepley }
627cd0c2139SMatthew G Knepley
DMPlexShiftCoordinates_Internal(DM dm,PetscInt depthShift[],DM dmNew)628d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexShiftCoordinates_Internal(DM dm, PetscInt depthShift[], DM dmNew)
629d71ae5a4SJacob Faibussowitsch {
630cd0c2139SMatthew G Knepley PetscSection coordSection, newCoordSection;
631cd0c2139SMatthew G Knepley Vec coordinates, newCoordinates;
632cd0c2139SMatthew G Knepley PetscScalar *coords, *newCoords;
633f2b8cce1SMatthew G. Knepley PetscInt coordSize, sStart, sEnd;
634f2b8cce1SMatthew G. Knepley PetscInt dim, depth = 0, cStart, cEnd, cStartNew, cEndNew, c, vStart, vEnd, vStartNew, vEndNew, v;
635f2b8cce1SMatthew G. Knepley PetscBool hasCells;
636cd0c2139SMatthew G Knepley
637cd0c2139SMatthew G Knepley PetscFunctionBegin;
6389566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDim(dm, &dim));
6399566063dSJacob Faibussowitsch PetscCall(DMSetCoordinateDim(dmNew, dim));
6409566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepth(dm, &depth));
641cd0c2139SMatthew G Knepley /* Step 8: Convert coordinates */
6429566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthStratum(dm, 0, &vStart, &vEnd));
6439566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(dm, 0, &cStart, &cEnd));
6449566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthStratum(dmNew, 0, &vStartNew, &vEndNew));
6459566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(dmNew, 0, &cStartNew, &cEndNew));
6469566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateSection(dm, &coordSection));
6479566063dSJacob Faibussowitsch PetscCall(PetscSectionCreate(PetscObjectComm((PetscObject)dm), &newCoordSection));
6489566063dSJacob Faibussowitsch PetscCall(PetscSectionSetNumFields(newCoordSection, 1));
6499566063dSJacob Faibussowitsch PetscCall(PetscSectionSetFieldComponents(newCoordSection, 0, dim));
6509566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(coordSection, &sStart, &sEnd));
651f2b8cce1SMatthew G. Knepley hasCells = sStart == cStart ? PETSC_TRUE : PETSC_FALSE;
6529566063dSJacob Faibussowitsch PetscCall(PetscSectionSetChart(newCoordSection, hasCells ? cStartNew : vStartNew, vEndNew));
653f2b8cce1SMatthew G. Knepley if (hasCells) {
654f2b8cce1SMatthew G. Knepley for (c = cStart; c < cEnd; ++c) {
655f2b8cce1SMatthew G. Knepley PetscInt cNew = DMPlexShiftPoint_Internal(c, depth, depthShift), dof;
656f2b8cce1SMatthew G. Knepley
6579566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(coordSection, c, &dof));
6589566063dSJacob Faibussowitsch PetscCall(PetscSectionSetDof(newCoordSection, cNew, dof));
6599566063dSJacob Faibussowitsch PetscCall(PetscSectionSetFieldDof(newCoordSection, cNew, 0, dof));
660f2b8cce1SMatthew G. Knepley }
661f2b8cce1SMatthew G. Knepley }
662cd0c2139SMatthew G Knepley for (v = vStartNew; v < vEndNew; ++v) {
6639566063dSJacob Faibussowitsch PetscCall(PetscSectionSetDof(newCoordSection, v, dim));
6649566063dSJacob Faibussowitsch PetscCall(PetscSectionSetFieldDof(newCoordSection, v, 0, dim));
665cd0c2139SMatthew G Knepley }
6669566063dSJacob Faibussowitsch PetscCall(PetscSectionSetUp(newCoordSection));
6679566063dSJacob Faibussowitsch PetscCall(DMSetCoordinateSection(dmNew, PETSC_DETERMINE, newCoordSection));
6689566063dSJacob Faibussowitsch PetscCall(PetscSectionGetStorageSize(newCoordSection, &coordSize));
6699566063dSJacob Faibussowitsch PetscCall(VecCreate(PETSC_COMM_SELF, &newCoordinates));
6709566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)newCoordinates, "coordinates"));
6719566063dSJacob Faibussowitsch PetscCall(VecSetSizes(newCoordinates, coordSize, PETSC_DETERMINE));
6729566063dSJacob Faibussowitsch PetscCall(VecSetBlockSize(newCoordinates, dim));
6739566063dSJacob Faibussowitsch PetscCall(VecSetType(newCoordinates, VECSTANDARD));
6749566063dSJacob Faibussowitsch PetscCall(DMSetCoordinatesLocal(dmNew, newCoordinates));
6759566063dSJacob Faibussowitsch PetscCall(DMGetCoordinatesLocal(dm, &coordinates));
6769566063dSJacob Faibussowitsch PetscCall(VecGetArray(coordinates, &coords));
6779566063dSJacob Faibussowitsch PetscCall(VecGetArray(newCoordinates, &newCoords));
678f2b8cce1SMatthew G. Knepley if (hasCells) {
679f2b8cce1SMatthew G. Knepley for (c = cStart; c < cEnd; ++c) {
680f2b8cce1SMatthew G. Knepley PetscInt cNew = DMPlexShiftPoint_Internal(c, depth, depthShift), dof, off, noff, d;
681f2b8cce1SMatthew G. Knepley
6829566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(coordSection, c, &dof));
6839566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(coordSection, c, &off));
6849566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(newCoordSection, cNew, &noff));
685f2b8cce1SMatthew G. Knepley for (d = 0; d < dof; ++d) newCoords[noff + d] = coords[off + d];
686f2b8cce1SMatthew G. Knepley }
687f2b8cce1SMatthew G. Knepley }
688cd0c2139SMatthew G Knepley for (v = vStart; v < vEnd; ++v) {
689cd0c2139SMatthew G Knepley PetscInt dof, off, noff, d;
690cd0c2139SMatthew G Knepley
6919566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(coordSection, v, &dof));
6929566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(coordSection, v, &off));
6939566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(newCoordSection, DMPlexShiftPoint_Internal(v, depth, depthShift), &noff));
694f2b8cce1SMatthew G. Knepley for (d = 0; d < dof; ++d) newCoords[noff + d] = coords[off + d];
695cd0c2139SMatthew G Knepley }
6969566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(coordinates, &coords));
6979566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(newCoordinates, &newCoords));
6989566063dSJacob Faibussowitsch PetscCall(VecDestroy(&newCoordinates));
6999566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&newCoordSection));
7003ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS);
701cd0c2139SMatthew G Knepley }
702cd0c2139SMatthew G Knepley
DMPlexShiftSF_Single(DM dm,PetscInt depthShift[],PetscSF sf,PetscSF sfNew)703d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexShiftSF_Single(DM dm, PetscInt depthShift[], PetscSF sf, PetscSF sfNew)
704d71ae5a4SJacob Faibussowitsch {
705cd0c2139SMatthew G Knepley const PetscSFNode *remotePoints;
706cd0c2139SMatthew G Knepley PetscSFNode *gremotePoints;
707cd0c2139SMatthew G Knepley const PetscInt *localPoints;
708cd0c2139SMatthew G Knepley PetscInt *glocalPoints, *newLocation, *newRemoteLocation;
7090e33faafSMatthew G. Knepley PetscInt numRoots, numLeaves, l, pStart, pEnd, depth = 0, totShift = 0;
710cd0c2139SMatthew G Knepley
711cd0c2139SMatthew G Knepley PetscFunctionBegin;
7129566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepth(dm, &depth));
7139566063dSJacob Faibussowitsch PetscCall(DMPlexGetChart(dm, &pStart, &pEnd));
7149566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(sf, &numRoots, &numLeaves, &localPoints, &remotePoints));
7156e21efdcSToby Isaac totShift = DMPlexShiftPoint_Internal(pEnd, depth, depthShift) - pEnd;
716cd0c2139SMatthew G Knepley if (numRoots >= 0) {
7179566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(numRoots, &newLocation, pEnd - pStart, &newRemoteLocation));
7180e33faafSMatthew G. Knepley for (l = 0; l < numRoots; ++l) newLocation[l] = DMPlexShiftPoint_Internal(l, depth, depthShift);
7199566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(sf, MPIU_INT, newLocation, newRemoteLocation, MPI_REPLACE));
7209566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(sf, MPIU_INT, newLocation, newRemoteLocation, MPI_REPLACE));
7219566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(numLeaves, &glocalPoints));
7229566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(numLeaves, &gremotePoints));
723cd0c2139SMatthew G Knepley for (l = 0; l < numLeaves; ++l) {
7242582d50cSToby Isaac glocalPoints[l] = DMPlexShiftPoint_Internal(localPoints[l], depth, depthShift);
725cd0c2139SMatthew G Knepley gremotePoints[l].rank = remotePoints[l].rank;
726cd0c2139SMatthew G Knepley gremotePoints[l].index = newRemoteLocation[localPoints[l]];
727cd0c2139SMatthew G Knepley }
7289566063dSJacob Faibussowitsch PetscCall(PetscFree2(newLocation, newRemoteLocation));
7299566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(sfNew, numRoots + totShift, numLeaves, glocalPoints, PETSC_OWN_POINTER, gremotePoints, PETSC_OWN_POINTER));
7300e33faafSMatthew G. Knepley }
7313ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS);
7320e33faafSMatthew G. Knepley }
7330e33faafSMatthew G. Knepley
DMPlexShiftSF_Internal(DM dm,PetscInt depthShift[],DM dmNew)734d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexShiftSF_Internal(DM dm, PetscInt depthShift[], DM dmNew)
735d71ae5a4SJacob Faibussowitsch {
7360e33faafSMatthew G. Knepley PetscSF sfPoint, sfPointNew;
7370e33faafSMatthew G. Knepley PetscBool useNatural;
7380e33faafSMatthew G. Knepley
7390e33faafSMatthew G. Knepley PetscFunctionBegin;
7400e33faafSMatthew G. Knepley /* Step 9: Convert pointSF */
7419566063dSJacob Faibussowitsch PetscCall(DMGetPointSF(dm, &sfPoint));
7429566063dSJacob Faibussowitsch PetscCall(DMGetPointSF(dmNew, &sfPointNew));
7439566063dSJacob Faibussowitsch PetscCall(DMPlexShiftSF_Single(dm, depthShift, sfPoint, sfPointNew));
7440e33faafSMatthew G. Knepley /* Step 9b: Convert naturalSF */
7459566063dSJacob Faibussowitsch PetscCall(DMGetUseNatural(dm, &useNatural));
7460e33faafSMatthew G. Knepley if (useNatural) {
7470e33faafSMatthew G. Knepley PetscSF sfNat, sfNatNew;
7480e33faafSMatthew G. Knepley
7499566063dSJacob Faibussowitsch PetscCall(DMSetUseNatural(dmNew, useNatural));
7509566063dSJacob Faibussowitsch PetscCall(DMGetNaturalSF(dm, &sfNat));
7519566063dSJacob Faibussowitsch PetscCall(DMGetNaturalSF(dmNew, &sfNatNew));
7529566063dSJacob Faibussowitsch PetscCall(DMPlexShiftSF_Single(dm, depthShift, sfNat, sfNatNew));
753cd0c2139SMatthew G Knepley }
7543ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS);
755cd0c2139SMatthew G Knepley }
756cd0c2139SMatthew G Knepley
DMPlexShiftLabels_Internal(DM dm,PetscInt depthShift[],DM dmNew)757d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexShiftLabels_Internal(DM dm, PetscInt depthShift[], DM dmNew)
758d71ae5a4SJacob Faibussowitsch {
759d56405f8SMatthew G. Knepley PetscInt depth = 0, numLabels, l;
760cd0c2139SMatthew G Knepley
761cd0c2139SMatthew G Knepley PetscFunctionBegin;
7629566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepth(dm, &depth));
763cd0c2139SMatthew G Knepley /* Step 10: Convert labels */
7649566063dSJacob Faibussowitsch PetscCall(DMGetNumLabels(dm, &numLabels));
765cd0c2139SMatthew G Knepley for (l = 0; l < numLabels; ++l) {
766cd0c2139SMatthew G Knepley DMLabel label, newlabel;
767cd0c2139SMatthew G Knepley const char *lname;
768fa8e8ae5SToby Isaac PetscBool isDepth, isDim;
769cd0c2139SMatthew G Knepley IS valueIS;
770cd0c2139SMatthew G Knepley const PetscInt *values;
771cd0c2139SMatthew G Knepley PetscInt numValues, val;
772cd0c2139SMatthew G Knepley
7739566063dSJacob Faibussowitsch PetscCall(DMGetLabelName(dm, l, &lname));
7749566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(lname, "depth", &isDepth));
775cd0c2139SMatthew G Knepley if (isDepth) continue;
7769566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(lname, "dim", &isDim));
777fa8e8ae5SToby Isaac if (isDim) continue;
7789566063dSJacob Faibussowitsch PetscCall(DMCreateLabel(dmNew, lname));
7799566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, lname, &label));
7809566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dmNew, lname, &newlabel));
7819566063dSJacob Faibussowitsch PetscCall(DMLabelGetDefaultValue(label, &val));
7829566063dSJacob Faibussowitsch PetscCall(DMLabelSetDefaultValue(newlabel, val));
7839566063dSJacob Faibussowitsch PetscCall(DMLabelGetValueIS(label, &valueIS));
7849566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(valueIS, &numValues));
7859566063dSJacob Faibussowitsch PetscCall(ISGetIndices(valueIS, &values));
786cd0c2139SMatthew G Knepley for (val = 0; val < numValues; ++val) {
787cd0c2139SMatthew G Knepley IS pointIS;
788cd0c2139SMatthew G Knepley const PetscInt *points;
789cd0c2139SMatthew G Knepley PetscInt numPoints, p;
790cd0c2139SMatthew G Knepley
7919566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(label, values[val], &pointIS));
7929566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(pointIS, &numPoints));
7939566063dSJacob Faibussowitsch PetscCall(ISGetIndices(pointIS, &points));
794cd0c2139SMatthew G Knepley for (p = 0; p < numPoints; ++p) {
7952582d50cSToby Isaac const PetscInt newpoint = DMPlexShiftPoint_Internal(points[p], depth, depthShift);
796cd0c2139SMatthew G Knepley
7979566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(newlabel, newpoint, values[val]));
798cd0c2139SMatthew G Knepley }
7999566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(pointIS, &points));
8009566063dSJacob Faibussowitsch PetscCall(ISDestroy(&pointIS));
801cd0c2139SMatthew G Knepley }
8029566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(valueIS, &values));
8039566063dSJacob Faibussowitsch PetscCall(ISDestroy(&valueIS));
804cd0c2139SMatthew G Knepley }
8053ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS);
806d56405f8SMatthew G. Knepley }
807d56405f8SMatthew G. Knepley
DMPlexCreateVTKLabel_Internal(DM dm,PetscBool createGhostLabel,DM dmNew)808d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexCreateVTKLabel_Internal(DM dm, PetscBool createGhostLabel, DM dmNew)
809d71ae5a4SJacob Faibussowitsch {
810d56405f8SMatthew G. Knepley PetscSF sfPoint;
811d56405f8SMatthew G. Knepley DMLabel vtkLabel, ghostLabel = NULL;
812d56405f8SMatthew G. Knepley const PetscSFNode *leafRemote;
813d56405f8SMatthew G. Knepley const PetscInt *leafLocal;
814d56405f8SMatthew G. Knepley PetscInt cellHeight, cStart, cEnd, c, fStart, fEnd, f, numLeaves, l;
815d56405f8SMatthew G. Knepley PetscMPIInt rank;
816d56405f8SMatthew G. Knepley
817d56405f8SMatthew G. Knepley PetscFunctionBegin;
818cd0c2139SMatthew G Knepley /* Step 11: Make label for output (vtk) and to mark ghost points (ghost) */
8199566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)dm), &rank));
8209566063dSJacob Faibussowitsch PetscCall(DMGetPointSF(dm, &sfPoint));
8219566063dSJacob Faibussowitsch PetscCall(DMPlexGetVTKCellHeight(dmNew, &cellHeight));
8229566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(dm, cellHeight, &cStart, &cEnd));
8239566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(sfPoint, NULL, &numLeaves, &leafLocal, &leafRemote));
8249566063dSJacob Faibussowitsch PetscCall(DMCreateLabel(dmNew, "vtk"));
8259566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dmNew, "vtk", &vtkLabel));
826d56405f8SMatthew G. Knepley if (createGhostLabel) {
8279566063dSJacob Faibussowitsch PetscCall(DMCreateLabel(dmNew, "ghost"));
8289566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dmNew, "ghost", &ghostLabel));
829d56405f8SMatthew G. Knepley }
830cd0c2139SMatthew G Knepley for (l = 0, c = cStart; l < numLeaves && c < cEnd; ++l, ++c) {
83148a46eb9SPierre Jolivet for (; c < leafLocal[l] && c < cEnd; ++c) PetscCall(DMLabelSetValue(vtkLabel, c, 1));
832cd0c2139SMatthew G Knepley if (leafLocal[l] >= cEnd) break;
833ac530a7eSPierre Jolivet if (leafRemote[l].rank == rank) PetscCall(DMLabelSetValue(vtkLabel, c, 1));
834ac530a7eSPierre Jolivet else if (ghostLabel) PetscCall(DMLabelSetValue(ghostLabel, c, 2));
835cd0c2139SMatthew G Knepley }
83648a46eb9SPierre Jolivet for (; c < cEnd; ++c) PetscCall(DMLabelSetValue(vtkLabel, c, 1));
837d56405f8SMatthew G. Knepley if (ghostLabel) {
8389566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(dmNew, 1, &fStart, &fEnd));
839cd0c2139SMatthew G Knepley for (f = fStart; f < fEnd; ++f) {
840cd0c2139SMatthew G Knepley PetscInt numCells;
841cd0c2139SMatthew G Knepley
8429566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dmNew, f, &numCells));
843cd0c2139SMatthew G Knepley if (numCells < 2) {
8449566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(ghostLabel, f, 1));
845cd0c2139SMatthew G Knepley } else {
846cd0c2139SMatthew G Knepley const PetscInt *cells = NULL;
847cd0c2139SMatthew G Knepley PetscInt vA, vB;
848cd0c2139SMatthew G Knepley
8499566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(dmNew, f, &cells));
8509566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(vtkLabel, cells[0], &vA));
8519566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(vtkLabel, cells[1], &vB));
8529566063dSJacob Faibussowitsch if (vA != 1 && vB != 1) PetscCall(DMLabelSetValue(ghostLabel, f, 1));
853cd0c2139SMatthew G Knepley }
854cd0c2139SMatthew G Knepley }
855d56405f8SMatthew G. Knepley }
8563ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS);
857cd0c2139SMatthew G Knepley }
858cd0c2139SMatthew G Knepley
DMPlexShiftTree_Internal(DM dm,PetscInt depthShift[],DM dmNew)859d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexShiftTree_Internal(DM dm, PetscInt depthShift[], DM dmNew)
860d71ae5a4SJacob Faibussowitsch {
861ca04dac2SToby Isaac DM refTree;
862ca04dac2SToby Isaac PetscSection pSec;
863ca04dac2SToby Isaac PetscInt *parents, *childIDs;
864ca04dac2SToby Isaac
865ca04dac2SToby Isaac PetscFunctionBegin;
8669566063dSJacob Faibussowitsch PetscCall(DMPlexGetReferenceTree(dm, &refTree));
8679566063dSJacob Faibussowitsch PetscCall(DMPlexSetReferenceTree(dmNew, refTree));
8689566063dSJacob Faibussowitsch PetscCall(DMPlexGetTree(dm, &pSec, &parents, &childIDs, NULL, NULL));
869ca04dac2SToby Isaac if (pSec) {
8702582d50cSToby Isaac PetscInt p, pStart, pEnd, *parentsShifted, pStartShifted, pEndShifted, depth;
871fb4630b5SToby Isaac PetscInt *childIDsShifted;
872ca04dac2SToby Isaac PetscSection pSecShifted;
873ca04dac2SToby Isaac
8749566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(pSec, &pStart, &pEnd));
8759566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepth(dm, &depth));
8762582d50cSToby Isaac pStartShifted = DMPlexShiftPoint_Internal(pStart, depth, depthShift);
8772582d50cSToby Isaac pEndShifted = DMPlexShiftPoint_Internal(pEnd, depth, depthShift);
8789566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(pEndShifted - pStartShifted, &parentsShifted, pEndShifted - pStartShifted, &childIDsShifted));
8799566063dSJacob Faibussowitsch PetscCall(PetscSectionCreate(PetscObjectComm((PetscObject)dmNew), &pSecShifted));
8809566063dSJacob Faibussowitsch PetscCall(PetscSectionSetChart(pSecShifted, pStartShifted, pEndShifted));
881ca04dac2SToby Isaac for (p = pStartShifted; p < pEndShifted; p++) {
882fb4630b5SToby Isaac /* start off assuming no children */
8839566063dSJacob Faibussowitsch PetscCall(PetscSectionSetDof(pSecShifted, p, 0));
884fb4630b5SToby Isaac }
885fb4630b5SToby Isaac for (p = pStart; p < pEnd; p++) {
886fb4630b5SToby Isaac PetscInt dof;
887fb4630b5SToby Isaac PetscInt pNew = DMPlexShiftPoint_Internal(p, depth, depthShift);
888ca04dac2SToby Isaac
8899566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(pSec, p, &dof));
8909566063dSJacob Faibussowitsch PetscCall(PetscSectionSetDof(pSecShifted, pNew, dof));
891ca04dac2SToby Isaac }
8929566063dSJacob Faibussowitsch PetscCall(PetscSectionSetUp(pSecShifted));
893fb4630b5SToby Isaac for (p = pStart; p < pEnd; p++) {
894fb4630b5SToby Isaac PetscInt dof;
895fb4630b5SToby Isaac PetscInt pNew = DMPlexShiftPoint_Internal(p, depth, depthShift);
896fb4630b5SToby Isaac
8979566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(pSec, p, &dof));
898fb4630b5SToby Isaac if (dof) {
899fb4630b5SToby Isaac PetscInt off, offNew;
900fb4630b5SToby Isaac
9019566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(pSec, p, &off));
9029566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(pSecShifted, pNew, &offNew));
903fb4630b5SToby Isaac parentsShifted[offNew] = DMPlexShiftPoint_Internal(parents[off], depth, depthShift);
904fb4630b5SToby Isaac childIDsShifted[offNew] = childIDs[off];
905fb4630b5SToby Isaac }
906fb4630b5SToby Isaac }
9079566063dSJacob Faibussowitsch PetscCall(DMPlexSetTree(dmNew, pSecShifted, parentsShifted, childIDsShifted));
9089566063dSJacob Faibussowitsch PetscCall(PetscFree2(parentsShifted, childIDsShifted));
9099566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&pSecShifted));
910ca04dac2SToby Isaac }
9113ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS);
912ca04dac2SToby Isaac }
913ca04dac2SToby Isaac
DMPlexConstructGhostCells_Internal(DM dm,DMLabel label,PetscInt * numGhostCells,DM gdm)914d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexConstructGhostCells_Internal(DM dm, DMLabel label, PetscInt *numGhostCells, DM gdm)
915d71ae5a4SJacob Faibussowitsch {
916da97024aSMatthew G. Knepley PetscSF sf;
917cd0c2139SMatthew G Knepley IS valueIS;
918da97024aSMatthew G. Knepley const PetscInt *values, *leaves;
919cd0c2139SMatthew G Knepley PetscInt *depthShift;
9202582d50cSToby Isaac PetscInt d, depth = 0, nleaves, loc, Ng, numFS, fs, fStart, fEnd, ghostCell, cEnd, c;
9214fb89dddSMatthew G. Knepley const PetscReal *maxCell, *Lstart, *L;
922cd0c2139SMatthew G Knepley
923cd0c2139SMatthew G Knepley PetscFunctionBegin;
9249566063dSJacob Faibussowitsch PetscCall(DMGetPointSF(dm, &sf));
9259566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(sf, NULL, &nleaves, &leaves, NULL));
926da97024aSMatthew G. Knepley nleaves = PetscMax(0, nleaves);
9279566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(dm, 1, &fStart, &fEnd));
928cd0c2139SMatthew G Knepley /* Count ghost cells */
9299566063dSJacob Faibussowitsch PetscCall(DMLabelGetValueIS(label, &valueIS));
9309566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(valueIS, &numFS));
9319566063dSJacob Faibussowitsch PetscCall(ISGetIndices(valueIS, &values));
9324a6cfa73SMatthew G. Knepley Ng = 0;
933cd0c2139SMatthew G Knepley for (fs = 0; fs < numFS; ++fs) {
93446c796b9SMatthew G. Knepley IS faceIS;
93546c796b9SMatthew G. Knepley const PetscInt *faces;
93646c796b9SMatthew G. Knepley PetscInt numFaces, f, numBdFaces = 0;
937cd0c2139SMatthew G Knepley
9389566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(label, values[fs], &faceIS));
9399566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(faceIS, &numFaces));
9409566063dSJacob Faibussowitsch PetscCall(ISGetIndices(faceIS, &faces));
94146c796b9SMatthew G. Knepley for (f = 0; f < numFaces; ++f) {
942ca04dac2SToby Isaac PetscInt numChildren;
943ca04dac2SToby Isaac
9449566063dSJacob Faibussowitsch PetscCall(PetscFindInt(faces[f], nleaves, leaves, &loc));
9459566063dSJacob Faibussowitsch PetscCall(DMPlexGetTreeChildren(dm, faces[f], &numChildren, NULL));
946ca04dac2SToby Isaac /* non-local and ancestors points don't get to register ghosts */
947ca04dac2SToby Isaac if (loc >= 0 || numChildren) continue;
948b6555650SPierre Jolivet if (faces[f] >= fStart && faces[f] < fEnd) ++numBdFaces;
94946c796b9SMatthew G. Knepley }
9504a6cfa73SMatthew G. Knepley Ng += numBdFaces;
9519566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(faceIS, &faces));
9529566063dSJacob Faibussowitsch PetscCall(ISDestroy(&faceIS));
953cd0c2139SMatthew G Knepley }
9549566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepth(dm, &depth));
9559566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(2 * (depth + 1), &depthShift));
9562582d50cSToby Isaac for (d = 0; d <= depth; d++) {
95759eef20bSToby Isaac PetscInt dEnd;
9582582d50cSToby Isaac
9599566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthStratum(dm, d, NULL, &dEnd));
96059eef20bSToby Isaac depthShift[2 * d] = dEnd;
9612582d50cSToby Isaac depthShift[2 * d + 1] = 0;
9622582d50cSToby Isaac }
9632582d50cSToby Isaac if (depth >= 0) depthShift[2 * depth + 1] = Ng;
9649566063dSJacob Faibussowitsch PetscCall(DMPlexShiftPointSetUp_Internal(depth, depthShift));
9659566063dSJacob Faibussowitsch PetscCall(DMPlexShiftSizes_Internal(dm, depthShift, gdm));
966cd0c2139SMatthew G Knepley /* Step 3: Set cone/support sizes for new points */
9679566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(dm, 0, NULL, &cEnd));
96848a46eb9SPierre Jolivet for (c = cEnd; c < cEnd + Ng; ++c) PetscCall(DMPlexSetConeSize(gdm, c, 1));
969cd0c2139SMatthew G Knepley for (fs = 0; fs < numFS; ++fs) {
970cd0c2139SMatthew G Knepley IS faceIS;
971cd0c2139SMatthew G Knepley const PetscInt *faces;
972cd0c2139SMatthew G Knepley PetscInt numFaces, f;
973cd0c2139SMatthew G Knepley
9749566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(label, values[fs], &faceIS));
9759566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(faceIS, &numFaces));
9769566063dSJacob Faibussowitsch PetscCall(ISGetIndices(faceIS, &faces));
977cd0c2139SMatthew G Knepley for (f = 0; f < numFaces; ++f) {
978ca04dac2SToby Isaac PetscInt size, numChildren;
979cd0c2139SMatthew G Knepley
9809566063dSJacob Faibussowitsch PetscCall(PetscFindInt(faces[f], nleaves, leaves, &loc));
9819566063dSJacob Faibussowitsch PetscCall(DMPlexGetTreeChildren(dm, faces[f], &numChildren, NULL));
982ca04dac2SToby Isaac if (loc >= 0 || numChildren) continue;
98346c796b9SMatthew G. Knepley if ((faces[f] < fStart) || (faces[f] >= fEnd)) continue;
9849566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dm, faces[f], &size));
98563a3b9bcSJacob Faibussowitsch PetscCheck(size == 1, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "DM has boundary face %" PetscInt_FMT " with %" PetscInt_FMT " support cells", faces[f], size);
9869566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupportSize(gdm, faces[f] + Ng, 2));
987cd0c2139SMatthew G Knepley }
9889566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(faceIS, &faces));
9899566063dSJacob Faibussowitsch PetscCall(ISDestroy(&faceIS));
990cd0c2139SMatthew G Knepley }
991cd0c2139SMatthew G Knepley /* Step 4: Setup ghosted DM */
9929566063dSJacob Faibussowitsch PetscCall(DMSetUp(gdm));
9939566063dSJacob Faibussowitsch PetscCall(DMPlexShiftPoints_Internal(dm, depthShift, gdm));
994cd0c2139SMatthew G Knepley /* Step 6: Set cones and supports for new points */
995cd0c2139SMatthew G Knepley ghostCell = cEnd;
996cd0c2139SMatthew G Knepley for (fs = 0; fs < numFS; ++fs) {
997cd0c2139SMatthew G Knepley IS faceIS;
998cd0c2139SMatthew G Knepley const PetscInt *faces;
999cd0c2139SMatthew G Knepley PetscInt numFaces, f;
1000cd0c2139SMatthew G Knepley
10019566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(label, values[fs], &faceIS));
10029566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(faceIS, &numFaces));
10039566063dSJacob Faibussowitsch PetscCall(ISGetIndices(faceIS, &faces));
100446c796b9SMatthew G. Knepley for (f = 0; f < numFaces; ++f) {
1005ca04dac2SToby Isaac PetscInt newFace = faces[f] + Ng, numChildren;
1006cd0c2139SMatthew G Knepley
10079566063dSJacob Faibussowitsch PetscCall(PetscFindInt(faces[f], nleaves, leaves, &loc));
10089566063dSJacob Faibussowitsch PetscCall(DMPlexGetTreeChildren(dm, faces[f], &numChildren, NULL));
1009ca04dac2SToby Isaac if (loc >= 0 || numChildren) continue;
101046c796b9SMatthew G. Knepley if ((faces[f] < fStart) || (faces[f] >= fEnd)) continue;
10119566063dSJacob Faibussowitsch PetscCall(DMPlexSetCone(gdm, ghostCell, &newFace));
10129566063dSJacob Faibussowitsch PetscCall(DMPlexInsertSupport(gdm, newFace, 1, ghostCell));
101346c796b9SMatthew G. Knepley ++ghostCell;
1014cd0c2139SMatthew G Knepley }
10159566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(faceIS, &faces));
10169566063dSJacob Faibussowitsch PetscCall(ISDestroy(&faceIS));
1017cd0c2139SMatthew G Knepley }
10189566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(valueIS, &values));
10199566063dSJacob Faibussowitsch PetscCall(ISDestroy(&valueIS));
10209566063dSJacob Faibussowitsch PetscCall(DMPlexShiftCoordinates_Internal(dm, depthShift, gdm));
10219566063dSJacob Faibussowitsch PetscCall(DMPlexShiftSF_Internal(dm, depthShift, gdm));
10229566063dSJacob Faibussowitsch PetscCall(DMPlexShiftLabels_Internal(dm, depthShift, gdm));
10239566063dSJacob Faibussowitsch PetscCall(DMPlexCreateVTKLabel_Internal(dm, PETSC_TRUE, gdm));
10249566063dSJacob Faibussowitsch PetscCall(DMPlexShiftTree_Internal(dm, depthShift, gdm));
10259566063dSJacob Faibussowitsch PetscCall(PetscFree(depthShift));
102648a46eb9SPierre Jolivet for (c = cEnd; c < cEnd + Ng; ++c) PetscCall(DMPlexSetCellType(gdm, c, DM_POLYTOPE_FV_GHOST));
1027966c7b3fSMatthew G. Knepley /* Step 7: Periodicity */
10284fb89dddSMatthew G. Knepley PetscCall(DMGetPeriodicity(dm, &maxCell, &Lstart, &L));
10294fb89dddSMatthew G. Knepley PetscCall(DMSetPeriodicity(gdm, maxCell, Lstart, L));
10304a6cfa73SMatthew G. Knepley if (numGhostCells) *numGhostCells = Ng;
10313ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS);
1032cd0c2139SMatthew G Knepley }
1033cd0c2139SMatthew G Knepley
10345d83a8b1SBarry Smith /*@
1035cd0c2139SMatthew G Knepley DMPlexConstructGhostCells - Construct ghost cells which connect to every boundary face
1036cd0c2139SMatthew G Knepley
103720f4b53cSBarry Smith Collective
1038cd0c2139SMatthew G Knepley
1039cd0c2139SMatthew G Knepley Input Parameters:
104020f4b53cSBarry Smith + dm - The original `DM`
104120f4b53cSBarry Smith - labelName - The label specifying the boundary faces, or "Face Sets" if this is `NULL`
1042cd0c2139SMatthew G Knepley
1043cd0c2139SMatthew G Knepley Output Parameters:
104420f4b53cSBarry Smith + numGhostCells - The number of ghost cells added to the `DM`
104520f4b53cSBarry Smith - dmGhosted - The new `DM`
1046cd0c2139SMatthew G Knepley
1047cd0c2139SMatthew G Knepley Level: developer
1048cd0c2139SMatthew G Knepley
104920f4b53cSBarry Smith Note:
105020f4b53cSBarry Smith If no label exists of that name, one will be created marking all boundary faces
105120f4b53cSBarry Smith
10521cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMCreate()`
105331266bc0SMatthew G. Knepley @*/
DMPlexConstructGhostCells(DM dm,const char labelName[],PetscInt * numGhostCells,DM * dmGhosted)1054d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexConstructGhostCells(DM dm, const char labelName[], PetscInt *numGhostCells, DM *dmGhosted)
1055d71ae5a4SJacob Faibussowitsch {
1056cd0c2139SMatthew G Knepley DM gdm;
1057cd0c2139SMatthew G Knepley DMLabel label;
1058cd0c2139SMatthew G Knepley const char *name = labelName ? labelName : "Face Sets";
1059412e9a14SMatthew G. Knepley PetscInt dim, Ng = 0;
1060b0441da4SMatthew G. Knepley PetscBool useCone, useClosure;
1061cd0c2139SMatthew G Knepley
1062cd0c2139SMatthew G Knepley PetscFunctionBegin;
1063cd0c2139SMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
10644f572ea9SToby Isaac if (numGhostCells) PetscAssertPointer(numGhostCells, 3);
10654f572ea9SToby Isaac PetscAssertPointer(dmGhosted, 4);
10669566063dSJacob Faibussowitsch PetscCall(DMCreate(PetscObjectComm((PetscObject)dm), &gdm));
10679566063dSJacob Faibussowitsch PetscCall(DMSetType(gdm, DMPLEX));
10689566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim));
10699566063dSJacob Faibussowitsch PetscCall(DMSetDimension(gdm, dim));
10709566063dSJacob Faibussowitsch PetscCall(DMGetBasicAdjacency(dm, &useCone, &useClosure));
10719566063dSJacob Faibussowitsch PetscCall(DMSetBasicAdjacency(gdm, useCone, useClosure));
10729566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, name, &label));
1073cd0c2139SMatthew G Knepley if (!label) {
1074cd0c2139SMatthew G Knepley /* Get label for boundary faces */
10759566063dSJacob Faibussowitsch PetscCall(DMCreateLabel(dm, name));
10769566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, name, &label));
10779566063dSJacob Faibussowitsch PetscCall(DMPlexMarkBoundaryFaces(dm, 1, label));
1078cd0c2139SMatthew G Knepley }
10799566063dSJacob Faibussowitsch PetscCall(DMPlexConstructGhostCells_Internal(dm, label, &Ng, gdm));
10809566063dSJacob Faibussowitsch PetscCall(DMCopyDisc(dm, gdm));
10815de52c6dSVaclav Hapla PetscCall(DMPlexCopy_Internal(dm, PETSC_TRUE, PETSC_TRUE, gdm));
1082cad26855SMatthew G. Knepley gdm->setfromoptionscalled = dm->setfromoptionscalled;
1083d80ece95SMatthew G. Knepley if (numGhostCells) *numGhostCells = Ng;
1084cd0c2139SMatthew G Knepley *dmGhosted = gdm;
10853ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS);
1086cd0c2139SMatthew G Knepley }
1087cd0c2139SMatthew G Knepley
DivideCells_Private(DM dm,DMLabel label,DMPlexPointQueue queue)1088d71ae5a4SJacob Faibussowitsch static PetscErrorCode DivideCells_Private(DM dm, DMLabel label, DMPlexPointQueue queue)
1089d71ae5a4SJacob Faibussowitsch {
1090accc9626SMatthew G. Knepley PetscInt dim, d, shift = 100, *pStart, *pEnd;
1091accc9626SMatthew G. Knepley
1092accc9626SMatthew G. Knepley PetscFunctionBegin;
1093accc9626SMatthew G. Knepley PetscCall(DMGetDimension(dm, &dim));
1094accc9626SMatthew G. Knepley PetscCall(PetscMalloc2(dim, &pStart, dim, &pEnd));
109548a46eb9SPierre Jolivet for (d = 0; d < dim; ++d) PetscCall(DMPlexGetDepthStratum(dm, d, &pStart[d], &pEnd[d]));
1096accc9626SMatthew G. Knepley while (!DMPlexPointQueueEmpty(queue)) {
1097accc9626SMatthew G. Knepley PetscInt cell = -1;
1098accc9626SMatthew G. Knepley PetscInt *closure = NULL;
1099accc9626SMatthew G. Knepley PetscInt closureSize, cl, cval;
1100accc9626SMatthew G. Knepley
1101accc9626SMatthew G. Knepley PetscCall(DMPlexPointQueueDequeue(queue, &cell));
1102accc9626SMatthew G. Knepley PetscCall(DMLabelGetValue(label, cell, &cval));
1103accc9626SMatthew G. Knepley PetscCall(DMPlexGetTransitiveClosure(dm, cell, PETSC_TRUE, &closureSize, &closure));
1104accc9626SMatthew G. Knepley /* Mark points in the cell closure that touch the fault */
1105accc9626SMatthew G. Knepley for (d = 0; d < dim; ++d) {
1106accc9626SMatthew G. Knepley for (cl = 0; cl < closureSize * 2; cl += 2) {
1107accc9626SMatthew G. Knepley const PetscInt clp = closure[cl];
1108accc9626SMatthew G. Knepley PetscInt clval;
1109accc9626SMatthew G. Knepley
1110accc9626SMatthew G. Knepley if ((clp < pStart[d]) || (clp >= pEnd[d])) continue;
1111accc9626SMatthew G. Knepley PetscCall(DMLabelGetValue(label, clp, &clval));
1112accc9626SMatthew G. Knepley if (clval == -1) {
1113accc9626SMatthew G. Knepley const PetscInt *cone;
1114accc9626SMatthew G. Knepley PetscInt coneSize, c;
1115accc9626SMatthew G. Knepley
1116accc9626SMatthew G. Knepley /* If a cone point touches the fault, then this point touches the fault */
1117accc9626SMatthew G. Knepley PetscCall(DMPlexGetCone(dm, clp, &cone));
1118accc9626SMatthew G. Knepley PetscCall(DMPlexGetConeSize(dm, clp, &coneSize));
1119accc9626SMatthew G. Knepley for (c = 0; c < coneSize; ++c) {
1120accc9626SMatthew G. Knepley PetscInt cpval;
1121accc9626SMatthew G. Knepley
1122accc9626SMatthew G. Knepley PetscCall(DMLabelGetValue(label, cone[c], &cpval));
1123accc9626SMatthew G. Knepley if (cpval != -1) {
1124accc9626SMatthew G. Knepley PetscInt dep;
1125accc9626SMatthew G. Knepley
1126accc9626SMatthew G. Knepley PetscCall(DMPlexGetPointDepth(dm, clp, &dep));
1127accc9626SMatthew G. Knepley clval = cval < 0 ? -(shift + dep) : shift + dep;
1128accc9626SMatthew G. Knepley PetscCall(DMLabelSetValue(label, clp, clval));
1129accc9626SMatthew G. Knepley break;
1130accc9626SMatthew G. Knepley }
1131accc9626SMatthew G. Knepley }
1132accc9626SMatthew G. Knepley }
1133accc9626SMatthew G. Knepley /* Mark neighbor cells through marked faces (these cells must also touch the fault) */
1134accc9626SMatthew G. Knepley if (d == dim - 1 && clval != -1) {
1135accc9626SMatthew G. Knepley const PetscInt *support;
1136accc9626SMatthew G. Knepley PetscInt supportSize, s, nval;
1137accc9626SMatthew G. Knepley
1138accc9626SMatthew G. Knepley PetscCall(DMPlexGetSupport(dm, clp, &support));
1139accc9626SMatthew G. Knepley PetscCall(DMPlexGetSupportSize(dm, clp, &supportSize));
1140accc9626SMatthew G. Knepley for (s = 0; s < supportSize; ++s) {
1141accc9626SMatthew G. Knepley PetscCall(DMLabelGetValue(label, support[s], &nval));
1142accc9626SMatthew G. Knepley if (nval == -1) {
1143accc9626SMatthew G. Knepley PetscCall(DMLabelSetValue(label, support[s], clval < 0 ? clval - 1 : clval + 1));
1144accc9626SMatthew G. Knepley PetscCall(DMPlexPointQueueEnqueue(queue, support[s]));
1145accc9626SMatthew G. Knepley }
1146accc9626SMatthew G. Knepley }
1147accc9626SMatthew G. Knepley }
1148accc9626SMatthew G. Knepley }
1149accc9626SMatthew G. Knepley }
1150accc9626SMatthew G. Knepley PetscCall(DMPlexRestoreTransitiveClosure(dm, cell, PETSC_TRUE, &closureSize, &closure));
1151accc9626SMatthew G. Knepley }
1152accc9626SMatthew G. Knepley PetscCall(PetscFree2(pStart, pEnd));
11533ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS);
1154accc9626SMatthew G. Knepley }
1155accc9626SMatthew G. Knepley
1156accc9626SMatthew G. Knepley typedef struct {
1157accc9626SMatthew G. Knepley DM dm;
1158accc9626SMatthew G. Knepley DMPlexPointQueue queue;
1159accc9626SMatthew G. Knepley } PointDivision;
1160accc9626SMatthew G. Knepley
divideCell(DMLabel label,PetscInt p,PetscInt val,PetscCtx ctx)1161*2a8381b2SBarry Smith static PetscErrorCode divideCell(DMLabel label, PetscInt p, PetscInt val, PetscCtx ctx)
1162d71ae5a4SJacob Faibussowitsch {
1163accc9626SMatthew G. Knepley PointDivision *div = (PointDivision *)ctx;
1164accc9626SMatthew G. Knepley PetscInt cval = val < 0 ? val - 1 : val + 1;
1165accc9626SMatthew G. Knepley const PetscInt *support;
1166accc9626SMatthew G. Knepley PetscInt supportSize, s;
1167accc9626SMatthew G. Knepley
1168accc9626SMatthew G. Knepley PetscFunctionBegin;
1169accc9626SMatthew G. Knepley PetscCall(DMPlexGetSupport(div->dm, p, &support));
1170accc9626SMatthew G. Knepley PetscCall(DMPlexGetSupportSize(div->dm, p, &supportSize));
1171accc9626SMatthew G. Knepley for (s = 0; s < supportSize; ++s) {
1172accc9626SMatthew G. Knepley PetscCall(DMLabelSetValue(label, support[s], cval));
1173accc9626SMatthew G. Knepley PetscCall(DMPlexPointQueueEnqueue(div->queue, support[s]));
1174accc9626SMatthew G. Knepley }
11753ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS);
1176accc9626SMatthew G. Knepley }
1177accc9626SMatthew G. Knepley
1178accc9626SMatthew G. Knepley /* Mark cells by label propagation */
DMPlexLabelFaultHalo(DM dm,DMLabel faultLabel)1179d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexLabelFaultHalo(DM dm, DMLabel faultLabel)
1180d71ae5a4SJacob Faibussowitsch {
1181accc9626SMatthew G. Knepley DMPlexPointQueue queue = NULL;
1182accc9626SMatthew G. Knepley PointDivision div;
1183accc9626SMatthew G. Knepley PetscSF pointSF;
1184accc9626SMatthew G. Knepley IS pointIS;
1185accc9626SMatthew G. Knepley const PetscInt *points;
1186accc9626SMatthew G. Knepley PetscBool empty;
1187accc9626SMatthew G. Knepley PetscInt dim, shift = 100, n, i;
1188accc9626SMatthew G. Knepley
1189accc9626SMatthew G. Knepley PetscFunctionBegin;
1190accc9626SMatthew G. Knepley PetscCall(DMGetDimension(dm, &dim));
1191accc9626SMatthew G. Knepley PetscCall(DMPlexPointQueueCreate(1024, &queue));
1192accc9626SMatthew G. Knepley div.dm = dm;
1193accc9626SMatthew G. Knepley div.queue = queue;
1194accc9626SMatthew G. Knepley /* Enqueue cells on fault */
1195accc9626SMatthew G. Knepley PetscCall(DMLabelGetStratumIS(faultLabel, shift + dim, &pointIS));
1196accc9626SMatthew G. Knepley if (pointIS) {
1197accc9626SMatthew G. Knepley PetscCall(ISGetLocalSize(pointIS, &n));
1198accc9626SMatthew G. Knepley PetscCall(ISGetIndices(pointIS, &points));
119948a46eb9SPierre Jolivet for (i = 0; i < n; ++i) PetscCall(DMPlexPointQueueEnqueue(queue, points[i]));
1200accc9626SMatthew G. Knepley PetscCall(ISRestoreIndices(pointIS, &points));
1201accc9626SMatthew G. Knepley PetscCall(ISDestroy(&pointIS));
1202accc9626SMatthew G. Knepley }
1203accc9626SMatthew G. Knepley PetscCall(DMLabelGetStratumIS(faultLabel, -(shift + dim), &pointIS));
1204accc9626SMatthew G. Knepley if (pointIS) {
1205accc9626SMatthew G. Knepley PetscCall(ISGetLocalSize(pointIS, &n));
1206accc9626SMatthew G. Knepley PetscCall(ISGetIndices(pointIS, &points));
120748a46eb9SPierre Jolivet for (i = 0; i < n; ++i) PetscCall(DMPlexPointQueueEnqueue(queue, points[i]));
1208accc9626SMatthew G. Knepley PetscCall(ISRestoreIndices(pointIS, &points));
1209accc9626SMatthew G. Knepley PetscCall(ISDestroy(&pointIS));
1210accc9626SMatthew G. Knepley }
1211accc9626SMatthew G. Knepley
1212accc9626SMatthew G. Knepley PetscCall(DMGetPointSF(dm, &pointSF));
1213accc9626SMatthew G. Knepley PetscCall(DMLabelPropagateBegin(faultLabel, pointSF));
1214accc9626SMatthew G. Knepley /* While edge queue is not empty: */
1215accc9626SMatthew G. Knepley PetscCall(DMPlexPointQueueEmptyCollective((PetscObject)dm, queue, &empty));
1216accc9626SMatthew G. Knepley while (!empty) {
1217accc9626SMatthew G. Knepley PetscCall(DivideCells_Private(dm, faultLabel, queue));
1218accc9626SMatthew G. Knepley PetscCall(DMLabelPropagatePush(faultLabel, pointSF, divideCell, &div));
1219accc9626SMatthew G. Knepley PetscCall(DMPlexPointQueueEmptyCollective((PetscObject)dm, queue, &empty));
1220accc9626SMatthew G. Knepley }
1221accc9626SMatthew G. Knepley PetscCall(DMLabelPropagateEnd(faultLabel, pointSF));
1222accc9626SMatthew G. Knepley PetscCall(DMPlexPointQueueDestroy(&queue));
12233ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS);
1224accc9626SMatthew G. Knepley }
1225accc9626SMatthew G. Knepley
1226607ab7a9SMatthew G. Knepley /*
1227faedd622SMatthew G. Knepley We are adding three kinds of points here:
1228607ab7a9SMatthew G. Knepley Replicated: Copies of points which exist in the mesh, such as vertices identified across a fault
1229faedd622SMatthew G. Knepley Non-replicated: Points which exist on the fault, but are not replicated
1230b6dfa339SMatthew G. Knepley Ghost: These are shared fault faces which are not owned by this process. These do not produce hybrid cells and do not replicate
1231607ab7a9SMatthew G. Knepley Hybrid: Entirely new points, such as cohesive cells
1232a6ae58d1SMatthew G. Knepley
1233a6ae58d1SMatthew G. Knepley When creating subsequent cohesive cells, we shift the old hybrid cells to the end of the numbering at
1234a6ae58d1SMatthew G. Knepley each depth so that the new split/hybrid points can be inserted as a block.
1235607ab7a9SMatthew G. Knepley */
DMPlexConstructCohesiveCells_Internal(DM dm,DMLabel label,DMLabel splitLabel,DM sdm)1236d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexConstructCohesiveCells_Internal(DM dm, DMLabel label, DMLabel splitLabel, DM sdm)
1237d71ae5a4SJacob Faibussowitsch {
1238cd0c2139SMatthew G Knepley MPI_Comm comm;
1239607ab7a9SMatthew G. Knepley IS valueIS;
1240607ab7a9SMatthew G. Knepley PetscInt numSP = 0; /* The number of depths for which we have replicated points */
1241607ab7a9SMatthew G. Knepley const PetscInt *values; /* List of depths for which we have replicated points */
124218c5995bSMatthew G. Knepley IS *splitIS;
124318c5995bSMatthew G. Knepley IS *unsplitIS;
1244b6dfa339SMatthew G. Knepley IS ghostIS;
1245607ab7a9SMatthew G. Knepley PetscInt *numSplitPoints; /* The number of replicated points at each depth */
124618c5995bSMatthew G. Knepley PetscInt *numUnsplitPoints; /* The number of non-replicated points at each depth which still give rise to hybrid points */
124736dbac82SMatthew G. Knepley PetscInt *numHybridPoints; /* The number of new hybrid points at each depth */
124836dbac82SMatthew G. Knepley PetscInt *numHybridPointsOld; /* The number of existing hybrid points at each depth */
1249b6dfa339SMatthew G. Knepley PetscInt numGhostPoints; /* The number of unowned, shared fault faces */
1250607ab7a9SMatthew G. Knepley const PetscInt **splitPoints; /* Replicated points for each depth */
125118c5995bSMatthew G. Knepley const PetscInt **unsplitPoints; /* Non-replicated points for each depth */
1252b6dfa339SMatthew G. Knepley const PetscInt *ghostPoints; /* Ghost fault faces */
1253cd0c2139SMatthew G Knepley PetscSection coordSection;
1254cd0c2139SMatthew G Knepley Vec coordinates;
1255cd0c2139SMatthew G Knepley PetscScalar *coords;
1256a6ae58d1SMatthew G. Knepley PetscInt *depthMax; /* The first hybrid point at each depth in the original mesh */
1257a6ae58d1SMatthew G. Knepley PetscInt *depthEnd; /* The point limit at each depth in the original mesh */
1258607ab7a9SMatthew G. Knepley PetscInt *depthShift; /* Number of replicated+hybrid points at each depth */
1259607ab7a9SMatthew G. Knepley PetscInt *pMaxNew; /* The first replicated point at each depth in the new mesh, hybrids come after this */
1260607ab7a9SMatthew G. Knepley PetscInt *coneNew, *coneONew, *supportNew;
126118c5995bSMatthew G. Knepley PetscInt shift = 100, shift2 = 200, depth = 0, dep, dim, d, sp, maxConeSize, maxSupportSize, maxConeSizeNew, maxSupportSizeNew, numLabels, vStart, vEnd, pEnd, p, v;
1262cd0c2139SMatthew G Knepley
1263cd0c2139SMatthew G Knepley PetscFunctionBegin;
12649566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)dm, &comm));
12659566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim));
12669566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepth(dm, &depth));
12679566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthStratum(dm, 0, &vStart, &vEnd));
1268412e9a14SMatthew G. Knepley /* We do not want this label automatically computed, instead we compute it here */
12699566063dSJacob Faibussowitsch PetscCall(DMCreateLabel(sdm, "celltype"));
1270cd0c2139SMatthew G Knepley /* Count split points and add cohesive cells */
12719566063dSJacob Faibussowitsch PetscCall(DMPlexGetMaxSizes(dm, &maxConeSize, &maxSupportSize));
12729566063dSJacob Faibussowitsch PetscCall(PetscMalloc5(depth + 1, &depthMax, depth + 1, &depthEnd, 2 * (depth + 1), &depthShift, depth + 1, &pMaxNew, depth + 1, &numHybridPointsOld));
12739566063dSJacob Faibussowitsch PetscCall(PetscMalloc7(depth + 1, &splitIS, depth + 1, &unsplitIS, depth + 1, &numSplitPoints, depth + 1, &numUnsplitPoints, depth + 1, &numHybridPoints, depth + 1, &splitPoints, depth + 1, &unsplitPoints));
1274607ab7a9SMatthew G. Knepley for (d = 0; d <= depth; ++d) {
12759566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthStratum(dm, d, NULL, &pMaxNew[d]));
12769566063dSJacob Faibussowitsch PetscCall(DMPlexGetTensorPrismBounds_Internal(dm, d, &depthMax[d], NULL));
1277a6ae58d1SMatthew G. Knepley depthEnd[d] = pMaxNew[d];
1278a6ae58d1SMatthew G. Knepley depthMax[d] = depthMax[d] < 0 ? depthEnd[d] : depthMax[d];
1279607ab7a9SMatthew G. Knepley numSplitPoints[d] = 0;
128018c5995bSMatthew G. Knepley numUnsplitPoints[d] = 0;
1281607ab7a9SMatthew G. Knepley numHybridPoints[d] = 0;
1282a6ae58d1SMatthew G. Knepley numHybridPointsOld[d] = depthMax[d] < 0 ? 0 : depthEnd[d] - depthMax[d];
1283607ab7a9SMatthew G. Knepley splitPoints[d] = NULL;
128418c5995bSMatthew G. Knepley unsplitPoints[d] = NULL;
128518c5995bSMatthew G. Knepley splitIS[d] = NULL;
128618c5995bSMatthew G. Knepley unsplitIS[d] = NULL;
128759eef20bSToby Isaac /* we are shifting the existing hybrid points with the stratum behind them, so
128859eef20bSToby Isaac * the split comes at the end of the normal points, i.e., at depthMax[d] */
128959eef20bSToby Isaac depthShift[2 * d] = depthMax[d];
129059eef20bSToby Isaac depthShift[2 * d + 1] = 0;
1291607ab7a9SMatthew G. Knepley }
1292b6dfa339SMatthew G. Knepley numGhostPoints = 0;
1293b6dfa339SMatthew G. Knepley ghostPoints = NULL;
1294cd0c2139SMatthew G Knepley if (label) {
12959566063dSJacob Faibussowitsch PetscCall(DMLabelGetValueIS(label, &valueIS));
12969566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(valueIS, &numSP));
12979566063dSJacob Faibussowitsch PetscCall(ISGetIndices(valueIS, &values));
1298cd0c2139SMatthew G Knepley }
1299cd0c2139SMatthew G Knepley for (sp = 0; sp < numSP; ++sp) {
1300cd0c2139SMatthew G Knepley const PetscInt dep = values[sp];
1301cd0c2139SMatthew G Knepley
1302cd0c2139SMatthew G Knepley if ((dep < 0) || (dep > depth)) continue;
13039566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(label, dep, &splitIS[dep]));
130418c5995bSMatthew G. Knepley if (splitIS[dep]) {
13059566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(splitIS[dep], &numSplitPoints[dep]));
13069566063dSJacob Faibussowitsch PetscCall(ISGetIndices(splitIS[dep], &splitPoints[dep]));
130718c5995bSMatthew G. Knepley }
13089566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(label, shift2 + dep, &unsplitIS[dep]));
130918c5995bSMatthew G. Knepley if (unsplitIS[dep]) {
13109566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(unsplitIS[dep], &numUnsplitPoints[dep]));
13119566063dSJacob Faibussowitsch PetscCall(ISGetIndices(unsplitIS[dep], &unsplitPoints[dep]));
1312cd0c2139SMatthew G Knepley }
1313cd0c2139SMatthew G Knepley }
1314b6dfa339SMatthew G. Knepley PetscCall(DMLabelGetStratumIS(label, shift2 + dim - 1, &ghostIS));
1315b6dfa339SMatthew G. Knepley if (ghostIS) {
1316b6dfa339SMatthew G. Knepley PetscCall(ISGetLocalSize(ghostIS, &numGhostPoints));
1317b6dfa339SMatthew G. Knepley PetscCall(ISGetIndices(ghostIS, &ghostPoints));
1318b6dfa339SMatthew G. Knepley }
1319607ab7a9SMatthew G. Knepley /* Calculate number of hybrid points */
132018c5995bSMatthew G. Knepley for (d = 1; d <= depth; ++d) numHybridPoints[d] = numSplitPoints[d - 1] + numUnsplitPoints[d - 1]; /* There is a hybrid cell/face/edge for every split face/edge/vertex */
13212582d50cSToby Isaac for (d = 0; d <= depth; ++d) depthShift[2 * d + 1] = numSplitPoints[d] + numHybridPoints[d];
13229566063dSJacob Faibussowitsch PetscCall(DMPlexShiftPointSetUp_Internal(depth, depthShift));
132359eef20bSToby Isaac /* the end of the points in this stratum that come before the new points:
132459eef20bSToby Isaac * shifting pMaxNew[d] gets the new start of the next stratum, then count back the old hybrid points and the newly
132559eef20bSToby Isaac * added points */
13262582d50cSToby Isaac for (d = 0; d <= depth; ++d) pMaxNew[d] = DMPlexShiftPoint_Internal(pMaxNew[d], depth, depthShift) - (numHybridPointsOld[d] + numSplitPoints[d] + numHybridPoints[d]);
13279566063dSJacob Faibussowitsch PetscCall(DMPlexShiftSizes_Internal(dm, depthShift, sdm));
1328cd0c2139SMatthew G Knepley /* Step 3: Set cone/support sizes for new points */
1329cd0c2139SMatthew G Knepley for (dep = 0; dep <= depth; ++dep) {
1330cd0c2139SMatthew G Knepley for (p = 0; p < numSplitPoints[dep]; ++p) {
1331cd0c2139SMatthew G Knepley const PetscInt oldp = splitPoints[dep][p];
13322582d50cSToby Isaac const PetscInt newp = DMPlexShiftPoint_Internal(oldp, depth, depthShift) /*oldp + depthOffset[dep]*/;
13334c367dbcSMatthew G. Knepley const PetscInt splitp = p + pMaxNew[dep];
1334cd0c2139SMatthew G Knepley const PetscInt *support;
1335394c2f0fSMatthew G. Knepley DMPolytopeType ct;
13364c367dbcSMatthew G. Knepley PetscInt coneSize, supportSize, qf, qn, qp, e;
1337cd0c2139SMatthew G Knepley
13389566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, oldp, &coneSize));
13399566063dSJacob Faibussowitsch PetscCall(DMPlexSetConeSize(sdm, splitp, coneSize));
13409566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dm, oldp, &supportSize));
13419566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupportSize(sdm, splitp, supportSize));
13429566063dSJacob Faibussowitsch PetscCall(DMPlexGetCellType(dm, oldp, &ct));
13439566063dSJacob Faibussowitsch PetscCall(DMPlexSetCellType(sdm, splitp, ct));
1344cd0c2139SMatthew G Knepley if (dep == depth - 1) {
13454c367dbcSMatthew G. Knepley const PetscInt hybcell = p + pMaxNew[dep + 1] + numSplitPoints[dep + 1];
13464c367dbcSMatthew G. Knepley
1347cd0c2139SMatthew G Knepley /* Add cohesive cells, they are prisms */
13489566063dSJacob Faibussowitsch PetscCall(DMPlexSetConeSize(sdm, hybcell, 2 + coneSize));
1349412e9a14SMatthew G. Knepley switch (coneSize) {
1350d71ae5a4SJacob Faibussowitsch case 2:
1351d71ae5a4SJacob Faibussowitsch PetscCall(DMPlexSetCellType(sdm, hybcell, DM_POLYTOPE_SEG_PRISM_TENSOR));
1352d71ae5a4SJacob Faibussowitsch break;
1353d71ae5a4SJacob Faibussowitsch case 3:
1354d71ae5a4SJacob Faibussowitsch PetscCall(DMPlexSetCellType(sdm, hybcell, DM_POLYTOPE_TRI_PRISM_TENSOR));
1355d71ae5a4SJacob Faibussowitsch break;
1356d71ae5a4SJacob Faibussowitsch case 4:
1357d71ae5a4SJacob Faibussowitsch PetscCall(DMPlexSetCellType(sdm, hybcell, DM_POLYTOPE_QUAD_PRISM_TENSOR));
1358d71ae5a4SJacob Faibussowitsch break;
1359412e9a14SMatthew G. Knepley }
1360b6dfa339SMatthew G. Knepley /* Shared fault faces with only one support cell now have two with the cohesive cell */
1361b6dfa339SMatthew G. Knepley /* TODO Check thaat oldp has rootdegree == 1 */
1362b6dfa339SMatthew G. Knepley if (supportSize == 1) {
1363b6dfa339SMatthew G. Knepley const PetscInt *support;
1364b6dfa339SMatthew G. Knepley PetscInt val;
1365b6dfa339SMatthew G. Knepley
1366b6dfa339SMatthew G. Knepley PetscCall(DMPlexGetSupport(dm, oldp, &support));
1367b6dfa339SMatthew G. Knepley PetscCall(DMLabelGetValue(label, support[0], &val));
1368b6dfa339SMatthew G. Knepley if (val < 0) PetscCall(DMPlexSetSupportSize(sdm, splitp, 2));
1369b6dfa339SMatthew G. Knepley else PetscCall(DMPlexSetSupportSize(sdm, newp, 2));
1370b6dfa339SMatthew G. Knepley }
1371cd0c2139SMatthew G Knepley } else if (dep == 0) {
13724c367dbcSMatthew G. Knepley const PetscInt hybedge = p + pMaxNew[dep + 1] + numSplitPoints[dep + 1];
1373cd0c2139SMatthew G Knepley
13749566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(dm, oldp, &support));
13754c367dbcSMatthew G. Knepley for (e = 0, qn = 0, qp = 0, qf = 0; e < supportSize; ++e) {
1376cd0c2139SMatthew G Knepley PetscInt val;
1377cd0c2139SMatthew G Knepley
13789566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, support[e], &val));
13794c367dbcSMatthew G. Knepley if (val == 1) ++qf;
13804c367dbcSMatthew G. Knepley if ((val == 1) || (val == (shift + 1))) ++qn;
13814c367dbcSMatthew G. Knepley if ((val == 1) || (val == -(shift + 1))) ++qp;
1382cd0c2139SMatthew G Knepley }
13834c367dbcSMatthew G. Knepley /* Split old vertex: Edges into original vertex and new cohesive edge */
13849566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupportSize(sdm, newp, qn + 1));
13854c367dbcSMatthew G. Knepley /* Split new vertex: Edges into split vertex and new cohesive edge */
13869566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupportSize(sdm, splitp, qp + 1));
13874c367dbcSMatthew G. Knepley /* Add hybrid edge */
13889566063dSJacob Faibussowitsch PetscCall(DMPlexSetConeSize(sdm, hybedge, 2));
13899566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupportSize(sdm, hybedge, qf));
13909566063dSJacob Faibussowitsch PetscCall(DMPlexSetCellType(sdm, hybedge, DM_POLYTOPE_POINT_PRISM_TENSOR));
1391cd0c2139SMatthew G Knepley } else if (dep == dim - 2) {
13924c367dbcSMatthew G. Knepley const PetscInt hybface = p + pMaxNew[dep + 1] + numSplitPoints[dep + 1];
13934c367dbcSMatthew G. Knepley
13949566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(dm, oldp, &support));
13954c367dbcSMatthew G. Knepley for (e = 0, qn = 0, qp = 0, qf = 0; e < supportSize; ++e) {
1396cd0c2139SMatthew G Knepley PetscInt val;
1397cd0c2139SMatthew G Knepley
13989566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, support[e], &val));
13994c367dbcSMatthew G. Knepley if (val == dim - 1) ++qf;
14004c367dbcSMatthew G. Knepley if ((val == dim - 1) || (val == (shift + dim - 1))) ++qn;
14014c367dbcSMatthew G. Knepley if ((val == dim - 1) || (val == -(shift + dim - 1))) ++qp;
1402cd0c2139SMatthew G Knepley }
14034c367dbcSMatthew G. Knepley /* Split old edge: Faces into original edge and cohesive face (positive side?) */
14049566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupportSize(sdm, newp, qn + 1));
14054c367dbcSMatthew G. Knepley /* Split new edge: Faces into split edge and cohesive face (negative side?) */
14069566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupportSize(sdm, splitp, qp + 1));
14074c367dbcSMatthew G. Knepley /* Add hybrid face */
14089566063dSJacob Faibussowitsch PetscCall(DMPlexSetConeSize(sdm, hybface, 4));
14099566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupportSize(sdm, hybface, qf));
14109566063dSJacob Faibussowitsch PetscCall(DMPlexSetCellType(sdm, hybface, DM_POLYTOPE_SEG_PRISM_TENSOR));
1411cd0c2139SMatthew G Knepley }
1412cd0c2139SMatthew G Knepley }
1413cd0c2139SMatthew G Knepley }
141418c5995bSMatthew G. Knepley for (dep = 0; dep <= depth; ++dep) {
141518c5995bSMatthew G. Knepley for (p = 0; p < numUnsplitPoints[dep]; ++p) {
141618c5995bSMatthew G. Knepley const PetscInt oldp = unsplitPoints[dep][p];
14172582d50cSToby Isaac const PetscInt newp = DMPlexShiftPoint_Internal(oldp, depth, depthShift) /*oldp + depthOffset[dep]*/;
141818c5995bSMatthew G. Knepley const PetscInt *support;
1419da1dd7e4SMatthew G. Knepley PetscInt coneSize, supportSize, qf, e, s;
142018c5995bSMatthew G. Knepley
14219566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, oldp, &coneSize));
14229566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dm, oldp, &supportSize));
14239566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(dm, oldp, &support));
142418c5995bSMatthew G. Knepley if (dep == 0) {
142518c5995bSMatthew G. Knepley const PetscInt hybedge = p + pMaxNew[dep + 1] + numSplitPoints[dep + 1] + numSplitPoints[dep];
142618c5995bSMatthew G. Knepley
142739254ff6SMatthew G. Knepley /* Unsplit vertex: Edges into original vertex, split edges, and new cohesive edge twice */
142839254ff6SMatthew G. Knepley for (s = 0, qf = 0; s < supportSize; ++s, ++qf) {
14299566063dSJacob Faibussowitsch PetscCall(PetscFindInt(support[s], numSplitPoints[dep + 1], splitPoints[dep + 1], &e));
143039254ff6SMatthew G. Knepley if (e >= 0) ++qf;
143139254ff6SMatthew G. Knepley }
14329566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupportSize(sdm, newp, qf + 2));
143318c5995bSMatthew G. Knepley /* Add hybrid edge */
14349566063dSJacob Faibussowitsch PetscCall(DMPlexSetConeSize(sdm, hybedge, 2));
1435e1757548SMatthew G. Knepley for (e = 0, qf = 0; e < supportSize; ++e) {
1436e1757548SMatthew G. Knepley PetscInt val;
1437e1757548SMatthew G. Knepley
14389566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, support[e], &val));
1439e1757548SMatthew G. Knepley /* Split and unsplit edges produce hybrid faces */
1440da1dd7e4SMatthew G. Knepley if (val == 1) ++qf;
1441da1dd7e4SMatthew G. Knepley if (val == (shift2 + 1)) ++qf;
1442e1757548SMatthew G. Knepley }
14439566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupportSize(sdm, hybedge, qf));
14449566063dSJacob Faibussowitsch PetscCall(DMPlexSetCellType(sdm, hybedge, DM_POLYTOPE_POINT_PRISM_TENSOR));
144518c5995bSMatthew G. Knepley } else if (dep == dim - 2) {
144618c5995bSMatthew G. Knepley const PetscInt hybface = p + pMaxNew[dep + 1] + numSplitPoints[dep + 1] + numSplitPoints[dep];
1447cd0c2139SMatthew G Knepley PetscInt val;
1448cd0c2139SMatthew G Knepley
1449da1dd7e4SMatthew G. Knepley for (e = 0, qf = 0; e < supportSize; ++e) {
14509566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, support[e], &val));
1451da1dd7e4SMatthew G. Knepley if (val == dim - 1) qf += 2;
1452da1dd7e4SMatthew G. Knepley else ++qf;
1453cd0c2139SMatthew G Knepley }
145418c5995bSMatthew G. Knepley /* Unsplit edge: Faces into original edge, split face, and cohesive face twice */
14559566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupportSize(sdm, newp, qf + 2));
145618c5995bSMatthew G. Knepley /* Add hybrid face */
1457da1dd7e4SMatthew G. Knepley for (e = 0, qf = 0; e < supportSize; ++e) {
14589566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, support[e], &val));
1459da1dd7e4SMatthew G. Knepley if (val == dim - 1) ++qf;
1460da1dd7e4SMatthew G. Knepley }
14619566063dSJacob Faibussowitsch PetscCall(DMPlexSetConeSize(sdm, hybface, 4));
14629566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupportSize(sdm, hybface, qf));
14639566063dSJacob Faibussowitsch PetscCall(DMPlexSetCellType(sdm, hybface, DM_POLYTOPE_SEG_PRISM_TENSOR));
1464cd0c2139SMatthew G Knepley }
1465cd0c2139SMatthew G Knepley }
1466cd0c2139SMatthew G Knepley }
1467cd0c2139SMatthew G Knepley /* Step 4: Setup split DM */
14689566063dSJacob Faibussowitsch PetscCall(DMSetUp(sdm));
14699566063dSJacob Faibussowitsch PetscCall(DMPlexShiftPoints_Internal(dm, depthShift, sdm));
14709566063dSJacob Faibussowitsch PetscCall(DMPlexGetMaxSizes(sdm, &maxConeSizeNew, &maxSupportSizeNew));
14719566063dSJacob Faibussowitsch PetscCall(PetscMalloc3(PetscMax(maxConeSize, maxConeSizeNew) * 3, &coneNew, PetscMax(maxConeSize, maxConeSizeNew) * 3, &coneONew, PetscMax(maxSupportSize, maxSupportSizeNew), &supportNew));
1472cd0c2139SMatthew G Knepley /* Step 6: Set cones and supports for new points */
1473cd0c2139SMatthew G Knepley for (dep = 0; dep <= depth; ++dep) {
1474cd0c2139SMatthew G Knepley for (p = 0; p < numSplitPoints[dep]; ++p) {
1475cd0c2139SMatthew G Knepley const PetscInt oldp = splitPoints[dep][p];
14762582d50cSToby Isaac const PetscInt newp = DMPlexShiftPoint_Internal(oldp, depth, depthShift) /*oldp + depthOffset[dep]*/;
14774c367dbcSMatthew G. Knepley const PetscInt splitp = p + pMaxNew[dep];
1478cd0c2139SMatthew G Knepley const PetscInt *cone, *support, *ornt;
1479b5a892a1SMatthew G. Knepley DMPolytopeType ct;
14804c367dbcSMatthew G. Knepley PetscInt coneSize, supportSize, q, qf, qn, qp, v, e, s;
1481cd0c2139SMatthew G Knepley
14829566063dSJacob Faibussowitsch PetscCall(DMPlexGetCellType(dm, oldp, &ct));
14839566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, oldp, &coneSize));
14849566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, oldp, &cone));
14859566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeOrientation(dm, oldp, &ornt));
14869566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dm, oldp, &supportSize));
14879566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(dm, oldp, &support));
1488cd0c2139SMatthew G Knepley if (dep == depth - 1) {
148996a07cd0SMatthew G. Knepley PetscBool hasUnsplit = PETSC_FALSE;
14904c367dbcSMatthew G. Knepley const PetscInt hybcell = p + pMaxNew[dep + 1] + numSplitPoints[dep + 1];
1491cd0c2139SMatthew G Knepley const PetscInt *supportF;
1492cd0c2139SMatthew G Knepley
1493b6dfa339SMatthew G. Knepley coneONew[0] = coneONew[1] = -1000;
1494cd0c2139SMatthew G Knepley /* Split face: copy in old face to new face to start */
14959566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(sdm, newp, &supportF));
14969566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupport(sdm, splitp, supportF));
1497cd0c2139SMatthew G Knepley /* Split old face: old vertices/edges in cone so no change */
1498cd0c2139SMatthew G Knepley /* Split new face: new vertices/edges in cone */
1499cd0c2139SMatthew G Knepley for (q = 0; q < coneSize; ++q) {
15009566063dSJacob Faibussowitsch PetscCall(PetscFindInt(cone[q], numSplitPoints[dep - 1], splitPoints[dep - 1], &v));
150118c5995bSMatthew G. Knepley if (v < 0) {
15029566063dSJacob Faibussowitsch PetscCall(PetscFindInt(cone[q], numUnsplitPoints[dep - 1], unsplitPoints[dep - 1], &v));
150363a3b9bcSJacob Faibussowitsch PetscCheck(v >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Could not locate point %" PetscInt_FMT " in split or unsplit points of depth %" PetscInt_FMT, cone[q], dep - 1);
15042582d50cSToby Isaac coneNew[2 + q] = DMPlexShiftPoint_Internal(cone[q], depth, depthShift) /*cone[q] + depthOffset[dep-1]*/;
150596a07cd0SMatthew G. Knepley hasUnsplit = PETSC_TRUE;
150618c5995bSMatthew G. Knepley } else {
15074c367dbcSMatthew G. Knepley coneNew[2 + q] = v + pMaxNew[dep - 1];
1508163235baSMatthew G. Knepley if (dep > 1) {
1509163235baSMatthew G. Knepley const PetscInt *econe;
1510163235baSMatthew G. Knepley PetscInt econeSize, r, vs, vu;
1511163235baSMatthew G. Knepley
15129566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, cone[q], &econeSize));
15139566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, cone[q], &econe));
1514163235baSMatthew G. Knepley for (r = 0; r < econeSize; ++r) {
15159566063dSJacob Faibussowitsch PetscCall(PetscFindInt(econe[r], numSplitPoints[dep - 2], splitPoints[dep - 2], &vs));
15169566063dSJacob Faibussowitsch PetscCall(PetscFindInt(econe[r], numUnsplitPoints[dep - 2], unsplitPoints[dep - 2], &vu));
1517163235baSMatthew G. Knepley if (vs >= 0) continue;
151863a3b9bcSJacob Faibussowitsch PetscCheck(vu >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Could not locate point %" PetscInt_FMT " in split or unsplit points of depth %" PetscInt_FMT, econe[r], dep - 2);
1519163235baSMatthew G. Knepley hasUnsplit = PETSC_TRUE;
1520163235baSMatthew G. Knepley }
1521163235baSMatthew G. Knepley }
1522cd0c2139SMatthew G Knepley }
1523cd0c2139SMatthew G Knepley }
15249566063dSJacob Faibussowitsch PetscCall(DMPlexSetCone(sdm, splitp, &coneNew[2]));
15259566063dSJacob Faibussowitsch PetscCall(DMPlexSetConeOrientation(sdm, splitp, ornt));
1526e537020bSMatthew G. Knepley /* Face support */
1527b6dfa339SMatthew G. Knepley PetscInt vals[2];
1528cd0c2139SMatthew G Knepley
1529b6dfa339SMatthew G. Knepley PetscCall(DMLabelGetValue(label, support[0], &vals[0]));
1530b6dfa339SMatthew G. Knepley if (supportSize > 1) PetscCall(DMLabelGetValue(label, support[1], &vals[1]));
1531b6dfa339SMatthew G. Knepley else vals[1] = -vals[0];
1532b6dfa339SMatthew G. Knepley PetscCheck(vals[0] * vals[1] < 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid support labels %" PetscInt_FMT " %" PetscInt_FMT, vals[0], vals[1]);
1533b6dfa339SMatthew G. Knepley
1534b6dfa339SMatthew G. Knepley for (s = 0; s < 2; ++s) {
1535b6dfa339SMatthew G. Knepley if (s >= supportSize) {
1536b6dfa339SMatthew G. Knepley if (vals[s] < 0) {
1537b6dfa339SMatthew G. Knepley /* Ghost old face: Replace negative side cell with cohesive cell */
1538accc9626SMatthew G. Knepley PetscCall(DMPlexInsertSupport(sdm, newp, s, hybcell));
1539b6dfa339SMatthew G. Knepley } else {
1540b6dfa339SMatthew G. Knepley /* Ghost new face: Replace positive side cell with cohesive cell */
1541accc9626SMatthew G. Knepley PetscCall(DMPlexInsertSupport(sdm, splitp, s, hybcell));
1542b6dfa339SMatthew G. Knepley }
1543b6dfa339SMatthew G. Knepley } else {
1544b6dfa339SMatthew G. Knepley if (vals[s] < 0) {
1545cd0c2139SMatthew G Knepley /* Split old face: Replace negative side cell with cohesive cell */
15469566063dSJacob Faibussowitsch PetscCall(DMPlexInsertSupport(sdm, newp, s, hybcell));
1547cd0c2139SMatthew G Knepley } else {
1548cd0c2139SMatthew G Knepley /* Split new face: Replace positive side cell with cohesive cell */
15499566063dSJacob Faibussowitsch PetscCall(DMPlexInsertSupport(sdm, splitp, s, hybcell));
1550b6dfa339SMatthew G. Knepley }
1551b6dfa339SMatthew G. Knepley }
1552b6dfa339SMatthew G. Knepley }
1553b6dfa339SMatthew G. Knepley /* Get orientation for cohesive face using the positive side cell */
1554e537020bSMatthew G. Knepley {
1555e537020bSMatthew G. Knepley const PetscInt *ncone, *nconeO;
1556b6dfa339SMatthew G. Knepley PetscInt nconeSize, nc, ocell;
1557accc9626SMatthew G. Knepley PetscBool flip = PETSC_FALSE;
1558e537020bSMatthew G. Knepley
15599371c9d4SSatish Balay if (supportSize > 1) {
15609371c9d4SSatish Balay ocell = vals[0] < 0 ? support[1] : support[0];
15619371c9d4SSatish Balay } else {
15629371c9d4SSatish Balay ocell = support[0];
15639371c9d4SSatish Balay flip = vals[0] < 0 ? PETSC_TRUE : PETSC_FALSE;
15649371c9d4SSatish Balay }
1565b6dfa339SMatthew G. Knepley PetscCall(DMPlexGetConeSize(dm, ocell, &nconeSize));
1566b6dfa339SMatthew G. Knepley PetscCall(DMPlexGetCone(dm, ocell, &ncone));
1567e1a13daeSMatthew G. Knepley PetscCall(DMPlexGetConeOrientation(dm, ocell, &nconeO));
1568e537020bSMatthew G. Knepley for (nc = 0; nc < nconeSize; ++nc) {
1569e537020bSMatthew G. Knepley if (ncone[nc] == oldp) {
1570b6dfa339SMatthew G. Knepley coneONew[0] = flip ? -(nconeO[nc] + 1) : nconeO[nc];
1571e537020bSMatthew G. Knepley break;
1572cd0c2139SMatthew G Knepley }
1573cd0c2139SMatthew G Knepley }
1574b6dfa339SMatthew G. Knepley PetscCheck(nc < nconeSize, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Could not locate face %" PetscInt_FMT " in neighboring cell %" PetscInt_FMT, oldp, ocell);
1575e537020bSMatthew G. Knepley }
15764c367dbcSMatthew G. Knepley /* Cohesive cell: Old and new split face, then new cohesive faces */
1577b6dfa339SMatthew G. Knepley {
157885036b15SMatthew G. Knepley const PetscInt No = DMPolytopeTypeGetNumArrangements(ct) / 2;
1579b6555650SPierre Jolivet PetscCheck(coneONew[0] >= -No && coneONew[0] < No, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid %s orientation %" PetscInt_FMT, DMPolytopeTypes[ct], coneONew[0]);
1580b6dfa339SMatthew G. Knepley }
158185036b15SMatthew G. Knepley const PetscInt *arr = DMPolytopeTypeGetArrangement(ct, coneONew[0]);
1582b5a892a1SMatthew G. Knepley
1583fd4b9f15SMatthew G. Knepley coneNew[0] = newp; /* Extracted negative side orientation above */
15844c367dbcSMatthew G. Knepley coneNew[1] = splitp;
15854c367dbcSMatthew G. Knepley coneONew[1] = coneONew[0];
1586e537020bSMatthew G. Knepley for (q = 0; q < coneSize; ++q) {
1587412e9a14SMatthew G. Knepley /* Hybrid faces must follow order from oriented end face */
1588b5a892a1SMatthew G. Knepley const PetscInt qa = arr[q * 2 + 0];
1589b5a892a1SMatthew G. Knepley const PetscInt qo = arr[q * 2 + 1];
1590b5a892a1SMatthew G. Knepley DMPolytopeType ft = dep == 2 ? DM_POLYTOPE_SEGMENT : DM_POLYTOPE_POINT;
1591412e9a14SMatthew G. Knepley
15929566063dSJacob Faibussowitsch PetscCall(PetscFindInt(cone[qa], numSplitPoints[dep - 1], splitPoints[dep - 1], &v));
159318c5995bSMatthew G. Knepley if (v < 0) {
15949566063dSJacob Faibussowitsch PetscCall(PetscFindInt(cone[qa], numUnsplitPoints[dep - 1], unsplitPoints[dep - 1], &v));
159518c5995bSMatthew G. Knepley coneNew[2 + q] = v + pMaxNew[dep] + numSplitPoints[dep] + numSplitPoints[dep - 1];
159618c5995bSMatthew G. Knepley } else {
159718c5995bSMatthew G. Knepley coneNew[2 + q] = v + pMaxNew[dep] + numSplitPoints[dep];
159818c5995bSMatthew G. Knepley }
1599b5a892a1SMatthew G. Knepley coneONew[2 + q] = DMPolytopeTypeComposeOrientation(ft, qo, ornt[qa]);
1600e537020bSMatthew G. Knepley }
16019566063dSJacob Faibussowitsch PetscCall(DMPlexSetCone(sdm, hybcell, coneNew));
16029566063dSJacob Faibussowitsch PetscCall(DMPlexSetConeOrientation(sdm, hybcell, coneONew));
160396a07cd0SMatthew G. Knepley /* Label the hybrid cells on the boundary of the split */
16049566063dSJacob Faibussowitsch if (hasUnsplit) PetscCall(DMLabelSetValue(label, -hybcell, dim));
1605cd0c2139SMatthew G Knepley } else if (dep == 0) {
16064c367dbcSMatthew G. Knepley const PetscInt hybedge = p + pMaxNew[dep + 1] + numSplitPoints[dep + 1];
1607cd0c2139SMatthew G Knepley
1608cd0c2139SMatthew G Knepley /* Split old vertex: Edges in old split faces and new cohesive edge */
16094c367dbcSMatthew G. Knepley for (e = 0, qn = 0; e < supportSize; ++e) {
1610cd0c2139SMatthew G Knepley PetscInt val;
1611cd0c2139SMatthew G Knepley
16129566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, support[e], &val));
1613ad540459SPierre Jolivet if ((val == 1) || (val == (shift + 1))) supportNew[qn++] = DMPlexShiftPoint_Internal(support[e], depth, depthShift) /*support[e] + depthOffset[dep+1]*/;
1614cd0c2139SMatthew G Knepley }
16154c367dbcSMatthew G. Knepley supportNew[qn] = hybedge;
16169566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupport(sdm, newp, supportNew));
1617cd0c2139SMatthew G Knepley /* Split new vertex: Edges in new split faces and new cohesive edge */
16184c367dbcSMatthew G. Knepley for (e = 0, qp = 0; e < supportSize; ++e) {
1619cd0c2139SMatthew G Knepley PetscInt val, edge;
1620cd0c2139SMatthew G Knepley
16219566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, support[e], &val));
1622cd0c2139SMatthew G Knepley if (val == 1) {
16239566063dSJacob Faibussowitsch PetscCall(PetscFindInt(support[e], numSplitPoints[dep + 1], splitPoints[dep + 1], &edge));
162463a3b9bcSJacob Faibussowitsch PetscCheck(edge >= 0, comm, PETSC_ERR_ARG_WRONG, "Edge %" PetscInt_FMT " is not a split edge", support[e]);
16254c367dbcSMatthew G. Knepley supportNew[qp++] = edge + pMaxNew[dep + 1];
1626cd0c2139SMatthew G Knepley } else if (val == -(shift + 1)) {
16272582d50cSToby Isaac supportNew[qp++] = DMPlexShiftPoint_Internal(support[e], depth, depthShift) /*support[e] + depthOffset[dep+1]*/;
1628cd0c2139SMatthew G Knepley }
1629cd0c2139SMatthew G Knepley }
16304c367dbcSMatthew G. Knepley supportNew[qp] = hybedge;
16319566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupport(sdm, splitp, supportNew));
16324c367dbcSMatthew G. Knepley /* Hybrid edge: Old and new split vertex */
1633cd0c2139SMatthew G Knepley coneNew[0] = newp;
1634cd0c2139SMatthew G Knepley coneNew[1] = splitp;
16359566063dSJacob Faibussowitsch PetscCall(DMPlexSetCone(sdm, hybedge, coneNew));
16364c367dbcSMatthew G. Knepley for (e = 0, qf = 0; e < supportSize; ++e) {
16374c367dbcSMatthew G. Knepley PetscInt val, edge;
16384c367dbcSMatthew G. Knepley
16399566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, support[e], &val));
16404c367dbcSMatthew G. Knepley if (val == 1) {
16419566063dSJacob Faibussowitsch PetscCall(PetscFindInt(support[e], numSplitPoints[dep + 1], splitPoints[dep + 1], &edge));
164263a3b9bcSJacob Faibussowitsch PetscCheck(edge >= 0, comm, PETSC_ERR_ARG_WRONG, "Edge %" PetscInt_FMT " is not a split edge", support[e]);
16434c367dbcSMatthew G. Knepley supportNew[qf++] = edge + pMaxNew[dep + 2] + numSplitPoints[dep + 2];
16444c367dbcSMatthew G. Knepley }
16454c367dbcSMatthew G. Knepley }
16469566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupport(sdm, hybedge, supportNew));
1647cd0c2139SMatthew G Knepley } else if (dep == dim - 2) {
16484c367dbcSMatthew G. Knepley const PetscInt hybface = p + pMaxNew[dep + 1] + numSplitPoints[dep + 1];
16494c367dbcSMatthew G. Knepley
1650cd0c2139SMatthew G Knepley /* Split old edge: old vertices in cone so no change */
1651cd0c2139SMatthew G Knepley /* Split new edge: new vertices in cone */
1652cd0c2139SMatthew G Knepley for (q = 0; q < coneSize; ++q) {
16539566063dSJacob Faibussowitsch PetscCall(PetscFindInt(cone[q], numSplitPoints[dep - 1], splitPoints[dep - 1], &v));
1654e1757548SMatthew G. Knepley if (v < 0) {
16559566063dSJacob Faibussowitsch PetscCall(PetscFindInt(cone[q], numUnsplitPoints[dep - 1], unsplitPoints[dep - 1], &v));
165663a3b9bcSJacob Faibussowitsch PetscCheck(v >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Could not locate point %" PetscInt_FMT " in split or unsplit points of depth %" PetscInt_FMT, cone[q], dep - 1);
16572582d50cSToby Isaac coneNew[q] = DMPlexShiftPoint_Internal(cone[q], depth, depthShift) /*cone[q] + depthOffset[dep-1]*/;
1658e1757548SMatthew G. Knepley } else {
16594c367dbcSMatthew G. Knepley coneNew[q] = v + pMaxNew[dep - 1];
1660cd0c2139SMatthew G Knepley }
1661e1757548SMatthew G. Knepley }
16629566063dSJacob Faibussowitsch PetscCall(DMPlexSetCone(sdm, splitp, coneNew));
1663cd0c2139SMatthew G Knepley /* Split old edge: Faces in positive side cells and old split faces */
1664cd0c2139SMatthew G Knepley for (e = 0, q = 0; e < supportSize; ++e) {
1665cd0c2139SMatthew G Knepley PetscInt val;
1666cd0c2139SMatthew G Knepley
16679566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, support[e], &val));
16684c367dbcSMatthew G. Knepley if (val == dim - 1) {
16692582d50cSToby Isaac supportNew[q++] = DMPlexShiftPoint_Internal(support[e], depth, depthShift) /*support[e] + depthOffset[dep+1]*/;
16704c367dbcSMatthew G. Knepley } else if (val == (shift + dim - 1)) {
16712582d50cSToby Isaac supportNew[q++] = DMPlexShiftPoint_Internal(support[e], depth, depthShift) /*support[e] + depthOffset[dep+1]*/;
1672cd0c2139SMatthew G Knepley }
1673cd0c2139SMatthew G Knepley }
1674b279cd2aSMatthew G. Knepley supportNew[q++] = p + pMaxNew[dep + 1] + numSplitPoints[dep + 1];
16759566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupport(sdm, newp, supportNew));
1676cd0c2139SMatthew G Knepley /* Split new edge: Faces in negative side cells and new split faces */
1677cd0c2139SMatthew G Knepley for (e = 0, q = 0; e < supportSize; ++e) {
1678cd0c2139SMatthew G Knepley PetscInt val, face;
1679cd0c2139SMatthew G Knepley
16809566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, support[e], &val));
1681cd0c2139SMatthew G Knepley if (val == dim - 1) {
16829566063dSJacob Faibussowitsch PetscCall(PetscFindInt(support[e], numSplitPoints[dep + 1], splitPoints[dep + 1], &face));
168363a3b9bcSJacob Faibussowitsch PetscCheck(face >= 0, comm, PETSC_ERR_ARG_WRONG, "Face %" PetscInt_FMT " is not a split face", support[e]);
16844c367dbcSMatthew G. Knepley supportNew[q++] = face + pMaxNew[dep + 1];
1685cd0c2139SMatthew G Knepley } else if (val == -(shift + dim - 1)) {
16862582d50cSToby Isaac supportNew[q++] = DMPlexShiftPoint_Internal(support[e], depth, depthShift) /*support[e] + depthOffset[dep+1]*/;
1687cd0c2139SMatthew G Knepley }
1688cd0c2139SMatthew G Knepley }
1689b279cd2aSMatthew G. Knepley supportNew[q++] = p + pMaxNew[dep + 1] + numSplitPoints[dep + 1];
16909566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupport(sdm, splitp, supportNew));
16914c367dbcSMatthew G. Knepley /* Hybrid face */
16924c367dbcSMatthew G. Knepley coneNew[0] = newp;
16934c367dbcSMatthew G. Knepley coneNew[1] = splitp;
16944c367dbcSMatthew G. Knepley for (v = 0; v < coneSize; ++v) {
16954c367dbcSMatthew G. Knepley PetscInt vertex;
16969566063dSJacob Faibussowitsch PetscCall(PetscFindInt(cone[v], numSplitPoints[dep - 1], splitPoints[dep - 1], &vertex));
1697e1757548SMatthew G. Knepley if (vertex < 0) {
16989566063dSJacob Faibussowitsch PetscCall(PetscFindInt(cone[v], numUnsplitPoints[dep - 1], unsplitPoints[dep - 1], &vertex));
169963a3b9bcSJacob Faibussowitsch PetscCheck(vertex >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Could not locate point %" PetscInt_FMT " in split or unsplit points of depth %" PetscInt_FMT, cone[v], dep - 1);
1700e1757548SMatthew G. Knepley coneNew[2 + v] = vertex + pMaxNew[dep] + numSplitPoints[dep] + numSplitPoints[dep - 1];
1701e1757548SMatthew G. Knepley } else {
17024c367dbcSMatthew G. Knepley coneNew[2 + v] = vertex + pMaxNew[dep] + numSplitPoints[dep];
17034c367dbcSMatthew G. Knepley }
1704e1757548SMatthew G. Knepley }
17059566063dSJacob Faibussowitsch PetscCall(DMPlexSetCone(sdm, hybface, coneNew));
17064c367dbcSMatthew G. Knepley for (e = 0, qf = 0; e < supportSize; ++e) {
17074c367dbcSMatthew G. Knepley PetscInt val, face;
17084c367dbcSMatthew G. Knepley
17099566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, support[e], &val));
17104c367dbcSMatthew G. Knepley if (val == dim - 1) {
17119566063dSJacob Faibussowitsch PetscCall(PetscFindInt(support[e], numSplitPoints[dep + 1], splitPoints[dep + 1], &face));
171263a3b9bcSJacob Faibussowitsch PetscCheck(face >= 0, comm, PETSC_ERR_ARG_WRONG, "Face %" PetscInt_FMT " is not a split face", support[e]);
17134c367dbcSMatthew G. Knepley supportNew[qf++] = face + pMaxNew[dep + 2] + numSplitPoints[dep + 2];
17144c367dbcSMatthew G. Knepley }
17154c367dbcSMatthew G. Knepley }
17169566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupport(sdm, hybface, supportNew));
1717cd0c2139SMatthew G Knepley }
1718cd0c2139SMatthew G Knepley }
1719cd0c2139SMatthew G Knepley }
172018c5995bSMatthew G. Knepley for (dep = 0; dep <= depth; ++dep) {
172118c5995bSMatthew G. Knepley for (p = 0; p < numUnsplitPoints[dep]; ++p) {
172218c5995bSMatthew G. Knepley const PetscInt oldp = unsplitPoints[dep][p];
17232582d50cSToby Isaac const PetscInt newp = DMPlexShiftPoint_Internal(oldp, depth, depthShift) /*oldp + depthOffset[dep]*/;
1724b5a892a1SMatthew G. Knepley const PetscInt *cone, *support;
1725e1757548SMatthew G. Knepley PetscInt coneSize, supportSize, supportSizeNew, q, qf, e, f, s;
172618c5995bSMatthew G. Knepley
17279566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, oldp, &coneSize));
17289566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, oldp, &cone));
17299566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dm, oldp, &supportSize));
17309566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(dm, oldp, &support));
173118c5995bSMatthew G. Knepley if (dep == 0) {
173218c5995bSMatthew G. Knepley const PetscInt hybedge = p + pMaxNew[dep + 1] + numSplitPoints[dep + 1] + numSplitPoints[dep];
173318c5995bSMatthew G. Knepley
173418c5995bSMatthew G. Knepley /* Unsplit vertex */
17359566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(sdm, newp, &supportSizeNew));
173618c5995bSMatthew G. Knepley for (s = 0, q = 0; s < supportSize; ++s) {
17372582d50cSToby Isaac supportNew[q++] = DMPlexShiftPoint_Internal(support[s], depth, depthShift) /*support[s] + depthOffset[dep+1]*/;
17389566063dSJacob Faibussowitsch PetscCall(PetscFindInt(support[s], numSplitPoints[dep + 1], splitPoints[dep + 1], &e));
1739ad540459SPierre Jolivet if (e >= 0) supportNew[q++] = e + pMaxNew[dep + 1];
174018c5995bSMatthew G. Knepley }
174118c5995bSMatthew G. Knepley supportNew[q++] = hybedge;
174218c5995bSMatthew G. Knepley supportNew[q++] = hybedge;
174363a3b9bcSJacob Faibussowitsch PetscCheck(q == supportSizeNew, comm, PETSC_ERR_ARG_WRONG, "Support size %" PetscInt_FMT " != %" PetscInt_FMT " for vertex %" PetscInt_FMT, q, supportSizeNew, newp);
17449566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupport(sdm, newp, supportNew));
174518c5995bSMatthew G. Knepley /* Hybrid edge */
174618c5995bSMatthew G. Knepley coneNew[0] = newp;
174718c5995bSMatthew G. Knepley coneNew[1] = newp;
17489566063dSJacob Faibussowitsch PetscCall(DMPlexSetCone(sdm, hybedge, coneNew));
174918c5995bSMatthew G. Knepley for (e = 0, qf = 0; e < supportSize; ++e) {
175018c5995bSMatthew G. Knepley PetscInt val, edge;
175118c5995bSMatthew G. Knepley
17529566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, support[e], &val));
175318c5995bSMatthew G. Knepley if (val == 1) {
17549566063dSJacob Faibussowitsch PetscCall(PetscFindInt(support[e], numSplitPoints[dep + 1], splitPoints[dep + 1], &edge));
175563a3b9bcSJacob Faibussowitsch PetscCheck(edge >= 0, comm, PETSC_ERR_ARG_WRONG, "Edge %" PetscInt_FMT " is not a split edge", support[e]);
175618c5995bSMatthew G. Knepley supportNew[qf++] = edge + pMaxNew[dep + 2] + numSplitPoints[dep + 2];
1757e1757548SMatthew G. Knepley } else if (val == (shift2 + 1)) {
17589566063dSJacob Faibussowitsch PetscCall(PetscFindInt(support[e], numUnsplitPoints[dep + 1], unsplitPoints[dep + 1], &edge));
175963a3b9bcSJacob Faibussowitsch PetscCheck(edge >= 0, comm, PETSC_ERR_ARG_WRONG, "Edge %" PetscInt_FMT " is not a unsplit edge", support[e]);
1760e1757548SMatthew G. Knepley supportNew[qf++] = edge + pMaxNew[dep + 2] + numSplitPoints[dep + 2] + numSplitPoints[dep + 1];
176118c5995bSMatthew G. Knepley }
176218c5995bSMatthew G. Knepley }
17639566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupport(sdm, hybedge, supportNew));
1764e1757548SMatthew G. Knepley } else if (dep == dim - 2) {
1765e1757548SMatthew G. Knepley const PetscInt hybface = p + pMaxNew[dep + 1] + numSplitPoints[dep + 1] + numSplitPoints[dep];
1766e1757548SMatthew G. Knepley
1767da1dd7e4SMatthew G. Knepley /* Unsplit edge: Faces into original edge, split face, and hybrid face twice */
1768e1757548SMatthew G. Knepley for (f = 0, qf = 0; f < supportSize; ++f) {
1769e1757548SMatthew G. Knepley PetscInt val, face;
1770e1757548SMatthew G. Knepley
17719566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, support[f], &val));
1772e1757548SMatthew G. Knepley if (val == dim - 1) {
17739566063dSJacob Faibussowitsch PetscCall(PetscFindInt(support[f], numSplitPoints[dep + 1], splitPoints[dep + 1], &face));
177463a3b9bcSJacob Faibussowitsch PetscCheck(face >= 0, comm, PETSC_ERR_ARG_WRONG, "Face %" PetscInt_FMT " is not a split face", support[f]);
17752582d50cSToby Isaac supportNew[qf++] = DMPlexShiftPoint_Internal(support[f], depth, depthShift) /*support[f] + depthOffset[dep+1]*/;
1776e1757548SMatthew G. Knepley supportNew[qf++] = face + pMaxNew[dep + 1];
1777e1757548SMatthew G. Knepley } else {
17782582d50cSToby Isaac supportNew[qf++] = DMPlexShiftPoint_Internal(support[f], depth, depthShift) /*support[f] + depthOffset[dep+1]*/;
1779e1757548SMatthew G. Knepley }
1780e1757548SMatthew G. Knepley }
1781e1757548SMatthew G. Knepley supportNew[qf++] = hybface;
1782e1757548SMatthew G. Knepley supportNew[qf++] = hybface;
17839566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(sdm, newp, &supportSizeNew));
178463a3b9bcSJacob Faibussowitsch PetscCheck(qf == supportSizeNew, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Support size for unsplit edge %" PetscInt_FMT " is %" PetscInt_FMT " != %" PetscInt_FMT, newp, qf, supportSizeNew);
17859566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupport(sdm, newp, supportNew));
1786e1757548SMatthew G. Knepley /* Add hybrid face */
1787e1757548SMatthew G. Knepley coneNew[0] = newp;
1788212cc919SMatthew G. Knepley coneNew[1] = newp;
17899566063dSJacob Faibussowitsch PetscCall(PetscFindInt(cone[0], numUnsplitPoints[dep - 1], unsplitPoints[dep - 1], &v));
179063a3b9bcSJacob Faibussowitsch PetscCheck(v >= 0, comm, PETSC_ERR_ARG_WRONG, "Vertex %" PetscInt_FMT " is not an unsplit vertex", cone[0]);
1791212cc919SMatthew G. Knepley coneNew[2] = v + pMaxNew[dep] + numSplitPoints[dep] + numSplitPoints[dep - 1];
17929566063dSJacob Faibussowitsch PetscCall(PetscFindInt(cone[1], numUnsplitPoints[dep - 1], unsplitPoints[dep - 1], &v));
179363a3b9bcSJacob Faibussowitsch PetscCheck(v >= 0, comm, PETSC_ERR_ARG_WRONG, "Vertex %" PetscInt_FMT " is not an unsplit vertex", cone[1]);
1794e1757548SMatthew G. Knepley coneNew[3] = v + pMaxNew[dep] + numSplitPoints[dep] + numSplitPoints[dep - 1];
17959566063dSJacob Faibussowitsch PetscCall(DMPlexSetCone(sdm, hybface, coneNew));
1796da1dd7e4SMatthew G. Knepley for (f = 0, qf = 0; f < supportSize; ++f) {
1797da1dd7e4SMatthew G. Knepley PetscInt val, face;
1798da1dd7e4SMatthew G. Knepley
17999566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, support[f], &val));
1800da1dd7e4SMatthew G. Knepley if (val == dim - 1) {
18019566063dSJacob Faibussowitsch PetscCall(PetscFindInt(support[f], numSplitPoints[dep + 1], splitPoints[dep + 1], &face));
1802da1dd7e4SMatthew G. Knepley supportNew[qf++] = face + pMaxNew[dep + 2] + numSplitPoints[dep + 2];
1803da1dd7e4SMatthew G. Knepley }
1804da1dd7e4SMatthew G. Knepley }
18059566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(sdm, hybface, &supportSizeNew));
180663a3b9bcSJacob Faibussowitsch PetscCheck(qf == supportSizeNew, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Support size for hybrid face %" PetscInt_FMT " is %" PetscInt_FMT " != %" PetscInt_FMT, hybface, qf, supportSizeNew);
18079566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupport(sdm, hybface, supportNew));
1808cd0c2139SMatthew G Knepley }
1809cd0c2139SMatthew G Knepley }
1810cd0c2139SMatthew G Knepley }
1811cd0c2139SMatthew G Knepley /* Step 6b: Replace split points in negative side cones */
1812cd0c2139SMatthew G Knepley for (sp = 0; sp < numSP; ++sp) {
1813cd0c2139SMatthew G Knepley PetscInt dep = values[sp];
1814cd0c2139SMatthew G Knepley IS pIS;
1815cd0c2139SMatthew G Knepley PetscInt numPoints;
1816cd0c2139SMatthew G Knepley const PetscInt *points;
1817cd0c2139SMatthew G Knepley
1818cd0c2139SMatthew G Knepley if (dep >= 0) continue;
18199566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(label, dep, &pIS));
1820cd0c2139SMatthew G Knepley if (!pIS) continue;
1821cd0c2139SMatthew G Knepley dep = -dep - shift;
18229566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(pIS, &numPoints));
18239566063dSJacob Faibussowitsch PetscCall(ISGetIndices(pIS, &points));
1824cd0c2139SMatthew G Knepley for (p = 0; p < numPoints; ++p) {
1825cd0c2139SMatthew G Knepley const PetscInt oldp = points[p];
18262582d50cSToby Isaac const PetscInt newp = DMPlexShiftPoint_Internal(oldp, depth, depthShift) /*depthOffset[dep] + oldp*/;
1827cd0c2139SMatthew G Knepley const PetscInt *cone;
1828cd0c2139SMatthew G Knepley PetscInt coneSize, c;
182950cf782dSMatthew G. Knepley /* PetscBool replaced = PETSC_FALSE; */
1830cd0c2139SMatthew G Knepley
1831cd0c2139SMatthew G Knepley /* Negative edge: replace split vertex */
1832cd0c2139SMatthew G Knepley /* Negative cell: replace split face */
18339566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(sdm, newp, &coneSize));
18349566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(sdm, newp, &cone));
1835cd0c2139SMatthew G Knepley for (c = 0; c < coneSize; ++c) {
1836e38fbfedSToby Isaac const PetscInt coldp = DMPlexShiftPointInverse_Internal(cone[c], depth, depthShift);
1837cd0c2139SMatthew G Knepley PetscInt csplitp, cp, val;
1838cd0c2139SMatthew G Knepley
18399566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, coldp, &val));
1840cd0c2139SMatthew G Knepley if (val == dep - 1) {
18419566063dSJacob Faibussowitsch PetscCall(PetscFindInt(coldp, numSplitPoints[dep - 1], splitPoints[dep - 1], &cp));
184263a3b9bcSJacob Faibussowitsch PetscCheck(cp >= 0, comm, PETSC_ERR_ARG_WRONG, "Point %" PetscInt_FMT " is not a split point of dimension %" PetscInt_FMT, oldp, dep - 1);
1843cd0c2139SMatthew G Knepley csplitp = pMaxNew[dep - 1] + cp;
18449566063dSJacob Faibussowitsch PetscCall(DMPlexInsertCone(sdm, newp, c, csplitp));
184550cf782dSMatthew G. Knepley /* replaced = PETSC_TRUE; */
1846cd0c2139SMatthew G Knepley }
1847cd0c2139SMatthew G Knepley }
18484a189a86SMatthew G. Knepley /* Cells with only a vertex or edge on the submesh have no replacement */
184928b400f6SJacob Faibussowitsch /* PetscCheck(replaced,comm, PETSC_ERR_ARG_WRONG, "The cone of point %d does not contain split points", oldp); */
1850cd0c2139SMatthew G Knepley }
18519566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(pIS, &points));
18529566063dSJacob Faibussowitsch PetscCall(ISDestroy(&pIS));
1853cd0c2139SMatthew G Knepley }
18540e18dc48SMatthew G. Knepley PetscCall(DMPlexReorderCohesiveSupports(sdm));
1855fa8e8ae5SToby Isaac /* Step 7: Coordinates */
18569566063dSJacob Faibussowitsch PetscCall(DMPlexShiftCoordinates_Internal(dm, depthShift, sdm));
18579566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateSection(sdm, &coordSection));
18589566063dSJacob Faibussowitsch PetscCall(DMGetCoordinatesLocal(sdm, &coordinates));
18599566063dSJacob Faibussowitsch PetscCall(VecGetArray(coordinates, &coords));
1860cd0c2139SMatthew G Knepley for (v = 0; v < (numSplitPoints ? numSplitPoints[0] : 0); ++v) {
18612582d50cSToby Isaac const PetscInt newp = DMPlexShiftPoint_Internal(splitPoints[0][v], depth, depthShift) /*depthOffset[0] + splitPoints[0][v]*/;
1862cd0c2139SMatthew G Knepley const PetscInt splitp = pMaxNew[0] + v;
1863cd0c2139SMatthew G Knepley PetscInt dof, off, soff, d;
1864cd0c2139SMatthew G Knepley
18659566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(coordSection, newp, &dof));
18669566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(coordSection, newp, &off));
18679566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(coordSection, splitp, &soff));
1868cd0c2139SMatthew G Knepley for (d = 0; d < dof; ++d) coords[soff + d] = coords[off + d];
1869cd0c2139SMatthew G Knepley }
18709566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(coordinates, &coords));
1871fa8e8ae5SToby Isaac /* Step 8: SF, if I can figure this out we can split the mesh in parallel */
18729566063dSJacob Faibussowitsch PetscCall(DMPlexShiftSF_Internal(dm, depthShift, sdm));
1873b6dfa339SMatthew G. Knepley /* TODO We need to associate the ghost points with the correct replica */
1874fa8e8ae5SToby Isaac /* Step 9: Labels */
18759566063dSJacob Faibussowitsch PetscCall(DMPlexShiftLabels_Internal(dm, depthShift, sdm));
18769566063dSJacob Faibussowitsch PetscCall(DMPlexCreateVTKLabel_Internal(dm, PETSC_FALSE, sdm));
18779566063dSJacob Faibussowitsch PetscCall(DMGetNumLabels(sdm, &numLabels));
1878cd0c2139SMatthew G Knepley for (dep = 0; dep <= depth; ++dep) {
1879cd0c2139SMatthew G Knepley for (p = 0; p < numSplitPoints[dep]; ++p) {
18802582d50cSToby Isaac const PetscInt newp = DMPlexShiftPoint_Internal(splitPoints[dep][p], depth, depthShift) /*depthOffset[dep] + splitPoints[dep][p]*/;
1881cd0c2139SMatthew G Knepley const PetscInt splitp = pMaxNew[dep] + p;
1882cd0c2139SMatthew G Knepley PetscInt l;
1883cd0c2139SMatthew G Knepley
18847db7e0a7SMatthew G. Knepley if (splitLabel) {
18857db7e0a7SMatthew G. Knepley const PetscInt val = 100 + dep;
18867db7e0a7SMatthew G. Knepley
18879566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(splitLabel, newp, val));
18889566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(splitLabel, splitp, -val));
18897db7e0a7SMatthew G. Knepley }
1890cd0c2139SMatthew G Knepley for (l = 0; l < numLabels; ++l) {
1891cd0c2139SMatthew G Knepley DMLabel mlabel;
1892cd0c2139SMatthew G Knepley const char *lname;
1893cd0c2139SMatthew G Knepley PetscInt val;
18949a356370SMatthew G. Knepley PetscBool isDepth;
1895cd0c2139SMatthew G Knepley
18969566063dSJacob Faibussowitsch PetscCall(DMGetLabelName(sdm, l, &lname));
18979566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(lname, "depth", &isDepth));
18989a356370SMatthew G. Knepley if (isDepth) continue;
18999566063dSJacob Faibussowitsch PetscCall(DMGetLabel(sdm, lname, &mlabel));
19009566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(mlabel, newp, &val));
190148a46eb9SPierre Jolivet if (val >= 0) PetscCall(DMLabelSetValue(mlabel, splitp, val));
1902cd0c2139SMatthew G Knepley }
1903cd0c2139SMatthew G Knepley }
1904cd0c2139SMatthew G Knepley }
1905cd0c2139SMatthew G Knepley for (sp = 0; sp < numSP; ++sp) {
1906cd0c2139SMatthew G Knepley const PetscInt dep = values[sp];
1907cd0c2139SMatthew G Knepley
1908cd0c2139SMatthew G Knepley if ((dep < 0) || (dep > depth)) continue;
19099566063dSJacob Faibussowitsch if (splitIS[dep]) PetscCall(ISRestoreIndices(splitIS[dep], &splitPoints[dep]));
19109566063dSJacob Faibussowitsch PetscCall(ISDestroy(&splitIS[dep]));
19119566063dSJacob Faibussowitsch if (unsplitIS[dep]) PetscCall(ISRestoreIndices(unsplitIS[dep], &unsplitPoints[dep]));
19129566063dSJacob Faibussowitsch PetscCall(ISDestroy(&unsplitIS[dep]));
1913cd0c2139SMatthew G Knepley }
1914b6dfa339SMatthew G. Knepley if (ghostIS) PetscCall(ISRestoreIndices(ghostIS, &ghostPoints));
1915b6dfa339SMatthew G. Knepley PetscCall(ISDestroy(&ghostIS));
1916cd0c2139SMatthew G Knepley if (label) {
19179566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(valueIS, &values));
19189566063dSJacob Faibussowitsch PetscCall(ISDestroy(&valueIS));
1919cd0c2139SMatthew G Knepley }
19200d4d4d06SMatthew G. Knepley for (d = 0; d <= depth; ++d) {
19219566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthStratum(sdm, d, NULL, &pEnd));
192236dbac82SMatthew G. Knepley pMaxNew[d] = pEnd - numHybridPoints[d] - numHybridPointsOld[d];
19230d4d4d06SMatthew G. Knepley }
19249566063dSJacob Faibussowitsch PetscCall(PetscFree3(coneNew, coneONew, supportNew));
19259566063dSJacob Faibussowitsch PetscCall(PetscFree5(depthMax, depthEnd, depthShift, pMaxNew, numHybridPointsOld));
19269566063dSJacob Faibussowitsch PetscCall(PetscFree7(splitIS, unsplitIS, numSplitPoints, numUnsplitPoints, numHybridPoints, splitPoints, unsplitPoints));
19273ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS);
1928cd0c2139SMatthew G Knepley }
1929cd0c2139SMatthew G Knepley
1930cd0c2139SMatthew G Knepley /*@C
1931cd0c2139SMatthew G Knepley DMPlexConstructCohesiveCells - Construct cohesive cells which split the face along an internal interface
1932cd0c2139SMatthew G Knepley
193320f4b53cSBarry Smith Collective
1934cd0c2139SMatthew G Knepley
1935cd0c2139SMatthew G Knepley Input Parameters:
193620f4b53cSBarry Smith + dm - The original `DM`
193720f4b53cSBarry Smith - label - The `DMLabel` specifying the boundary faces (this could be auto-generated)
1938cd0c2139SMatthew G Knepley
1939cd0c2139SMatthew G Knepley Output Parameters:
194020f4b53cSBarry Smith + splitLabel - The `DMLabel` containing the split points, or `NULL` if no output is desired
194120f4b53cSBarry Smith - dmSplit - The new `DM`
1942cd0c2139SMatthew G Knepley
1943cd0c2139SMatthew G Knepley Level: developer
1944cd0c2139SMatthew G Knepley
19451cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMCreate()`, `DMPlexLabelCohesiveComplete()`
1946cd0c2139SMatthew G Knepley @*/
DMPlexConstructCohesiveCells(DM dm,DMLabel label,DMLabel splitLabel,DM * dmSplit)1947d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexConstructCohesiveCells(DM dm, DMLabel label, DMLabel splitLabel, DM *dmSplit)
1948d71ae5a4SJacob Faibussowitsch {
1949cd0c2139SMatthew G Knepley DM sdm;
1950cd0c2139SMatthew G Knepley PetscInt dim;
1951cd0c2139SMatthew G Knepley
1952cd0c2139SMatthew G Knepley PetscFunctionBegin;
1953cd0c2139SMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
19544f572ea9SToby Isaac PetscAssertPointer(dmSplit, 4);
19559566063dSJacob Faibussowitsch PetscCall(DMCreate(PetscObjectComm((PetscObject)dm), &sdm));
19569566063dSJacob Faibussowitsch PetscCall(DMSetType(sdm, DMPLEX));
19579566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim));
19589566063dSJacob Faibussowitsch PetscCall(DMSetDimension(sdm, dim));
1959cd0c2139SMatthew G Knepley switch (dim) {
1960cd0c2139SMatthew G Knepley case 2:
1961d71ae5a4SJacob Faibussowitsch case 3:
1962d71ae5a4SJacob Faibussowitsch PetscCall(DMPlexConstructCohesiveCells_Internal(dm, label, splitLabel, sdm));
1963d71ae5a4SJacob Faibussowitsch break;
1964d71ae5a4SJacob Faibussowitsch default:
1965d71ae5a4SJacob Faibussowitsch SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Cannot construct cohesive cells for dimension %" PetscInt_FMT, dim);
1966cd0c2139SMatthew G Knepley }
1967cd0c2139SMatthew G Knepley *dmSplit = sdm;
19683ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS);
1969cd0c2139SMatthew G Knepley }
1970cd0c2139SMatthew G Knepley
19710f66a230SMatthew G. Knepley /* Returns the side of the surface for a given cell with a face on the surface */
GetSurfaceSide_Static(DM dm,DM subdm,PetscInt numSubpoints,const PetscInt * subpoints,PetscInt cell,PetscInt face,PetscBool * pos)1972d71ae5a4SJacob Faibussowitsch static PetscErrorCode GetSurfaceSide_Static(DM dm, DM subdm, PetscInt numSubpoints, const PetscInt *subpoints, PetscInt cell, PetscInt face, PetscBool *pos)
1973d71ae5a4SJacob Faibussowitsch {
19740f66a230SMatthew G. Knepley const PetscInt *cone, *ornt;
19750f66a230SMatthew G. Knepley PetscInt dim, coneSize, c;
19760f66a230SMatthew G. Knepley
19770f66a230SMatthew G. Knepley PetscFunctionBegin;
19780f66a230SMatthew G. Knepley *pos = PETSC_TRUE;
19799566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim));
19809566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, cell, &coneSize));
19819566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, cell, &cone));
19829566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeOrientation(dm, cell, &ornt));
19830f66a230SMatthew G. Knepley for (c = 0; c < coneSize; ++c) {
19840f66a230SMatthew G. Knepley if (cone[c] == face) {
19850f66a230SMatthew G. Knepley PetscInt o = ornt[c];
19860f66a230SMatthew G. Knepley
19870f66a230SMatthew G. Knepley if (subdm) {
19880f66a230SMatthew G. Knepley const PetscInt *subcone, *subornt;
19890f66a230SMatthew G. Knepley PetscInt subpoint, subface, subconeSize, sc;
19900f66a230SMatthew G. Knepley
19919566063dSJacob Faibussowitsch PetscCall(PetscFindInt(cell, numSubpoints, subpoints, &subpoint));
19929566063dSJacob Faibussowitsch PetscCall(PetscFindInt(face, numSubpoints, subpoints, &subface));
19939566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(subdm, subpoint, &subconeSize));
19949566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(subdm, subpoint, &subcone));
19959566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeOrientation(subdm, subpoint, &subornt));
19960f66a230SMatthew G. Knepley for (sc = 0; sc < subconeSize; ++sc) {
19970f66a230SMatthew G. Knepley if (subcone[sc] == subface) {
19980f66a230SMatthew G. Knepley o = subornt[0];
19990f66a230SMatthew G. Knepley break;
20000f66a230SMatthew G. Knepley }
20010f66a230SMatthew G. Knepley }
200263a3b9bcSJacob Faibussowitsch PetscCheck(sc < subconeSize, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Could not find subpoint %" PetscInt_FMT " (%" PetscInt_FMT ") in cone for subpoint %" PetscInt_FMT " (%" PetscInt_FMT ")", subface, face, subpoint, cell);
20030f66a230SMatthew G. Knepley }
20040f66a230SMatthew G. Knepley if (o >= 0) *pos = PETSC_TRUE;
20050f66a230SMatthew G. Knepley else *pos = PETSC_FALSE;
20060f66a230SMatthew G. Knepley break;
20070f66a230SMatthew G. Knepley }
20080f66a230SMatthew G. Knepley }
200963a3b9bcSJacob Faibussowitsch PetscCheck(c != coneSize, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Cell %" PetscInt_FMT " in split face %" PetscInt_FMT " support does not have it in the cone", cell, face);
20103ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS);
20110f66a230SMatthew G. Knepley }
20120f66a230SMatthew G. Knepley
CheckFaultEdge_Private(DM dm,DMLabel label,PetscBool split)20130542aa8cSMatthew G. Knepley static PetscErrorCode CheckFaultEdge_Private(DM dm, DMLabel label, PetscBool split)
2014d71ae5a4SJacob Faibussowitsch {
2015accc9626SMatthew G. Knepley IS facePosIS, faceNegIS, dimIS;
2016accc9626SMatthew G. Knepley const PetscInt *points;
20170542aa8cSMatthew G. Knepley PetscInt *closure = NULL, *inclosure = NULL;
20180542aa8cSMatthew G. Knepley PetscInt dim, numPoints, shift = 100, shift2 = 200, debug = 0;
2019accc9626SMatthew G. Knepley
2020accc9626SMatthew G. Knepley PetscFunctionBegin;
2021accc9626SMatthew G. Knepley PetscCall(DMGetDimension(dm, &dim));
20220542aa8cSMatthew G. Knepley // If any faces touching the fault divide cells on either side,
20230542aa8cSMatthew G. Knepley // either split them, or unsplit the connection
2024accc9626SMatthew G. Knepley PetscCall(DMLabelGetStratumIS(label, shift + dim - 1, &facePosIS));
2025accc9626SMatthew G. Knepley PetscCall(DMLabelGetStratumIS(label, -(shift + dim - 1), &faceNegIS));
2026accc9626SMatthew G. Knepley if (!facePosIS || !faceNegIS) {
2027accc9626SMatthew G. Knepley PetscCall(ISDestroy(&facePosIS));
2028accc9626SMatthew G. Knepley PetscCall(ISDestroy(&faceNegIS));
20293ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS);
2030accc9626SMatthew G. Knepley }
2031accc9626SMatthew G. Knepley PetscCall(ISExpand(facePosIS, faceNegIS, &dimIS));
2032accc9626SMatthew G. Knepley PetscCall(ISDestroy(&facePosIS));
2033accc9626SMatthew G. Knepley PetscCall(ISDestroy(&faceNegIS));
2034accc9626SMatthew G. Knepley PetscCall(ISGetLocalSize(dimIS, &numPoints));
2035accc9626SMatthew G. Knepley PetscCall(ISGetIndices(dimIS, &points));
20360542aa8cSMatthew G. Knepley for (PetscInt p = 0; p < numPoints; ++p) {
2037accc9626SMatthew G. Knepley const PetscInt point = points[p];
2038accc9626SMatthew G. Knepley const PetscInt *support;
2039accc9626SMatthew G. Knepley PetscInt supportSize, valA, valB;
2040accc9626SMatthew G. Knepley
2041accc9626SMatthew G. Knepley PetscCall(DMPlexGetSupportSize(dm, point, &supportSize));
2042accc9626SMatthew G. Knepley if (supportSize != 2) continue;
2043accc9626SMatthew G. Knepley PetscCall(DMPlexGetSupport(dm, point, &support));
2044accc9626SMatthew G. Knepley PetscCall(DMLabelGetValue(label, support[0], &valA));
2045accc9626SMatthew G. Knepley PetscCall(DMLabelGetValue(label, support[1], &valB));
2046accc9626SMatthew G. Knepley if ((valA == -1) || (valB == -1)) continue;
2047accc9626SMatthew G. Knepley if (valA * valB > 0) continue;
20480542aa8cSMatthew G. Knepley // Check that this face is not incident on only unsplit faces,
20490542aa8cSMatthew G. Knepley // meaning has at least one split face
2050e1a13daeSMatthew G. Knepley {
2051e1a13daeSMatthew G. Knepley PetscBool split = PETSC_FALSE;
20520542aa8cSMatthew G. Knepley PetscInt Ncl, val;
2053e1a13daeSMatthew G. Knepley
20540542aa8cSMatthew G. Knepley PetscCall(DMPlexGetTransitiveClosure(dm, point, PETSC_TRUE, &Ncl, &closure));
20550542aa8cSMatthew G. Knepley for (PetscInt cl = 0; cl < Ncl * 2; cl += 2) {
20560542aa8cSMatthew G. Knepley PetscCall(DMLabelGetValue(label, closure[cl], &val));
2057b6555650SPierre Jolivet if (val >= 0 && val <= dim) {
20589371c9d4SSatish Balay split = PETSC_TRUE;
20599371c9d4SSatish Balay break;
20609371c9d4SSatish Balay }
2061e1a13daeSMatthew G. Knepley }
2062e1a13daeSMatthew G. Knepley if (!split) continue;
2063e1a13daeSMatthew G. Knepley }
20640542aa8cSMatthew G. Knepley if (debug) PetscCall(PetscPrintf(PETSC_COMM_SELF, "Point %" PetscInt_FMT " is impinging (%" PetscInt_FMT ":%" PetscInt_FMT ", %" PetscInt_FMT ":%" PetscInt_FMT ")\n", point, support[0], valA, support[1], valB));
20650542aa8cSMatthew G. Knepley if (split) {
20660542aa8cSMatthew G. Knepley // Split the face
2067accc9626SMatthew G. Knepley PetscCall(DMLabelGetValue(label, point, &valA));
2068accc9626SMatthew G. Knepley PetscCall(DMLabelClearValue(label, point, valA));
2069accc9626SMatthew G. Knepley PetscCall(DMLabelSetValue(label, point, dim - 1));
2070accc9626SMatthew G. Knepley /* Label its closure:
2071accc9626SMatthew G. Knepley unmarked: label as unsplit
2072accc9626SMatthew G. Knepley incident: relabel as split
20730542aa8cSMatthew G. Knepley split: do nothing */
2074accc9626SMatthew G. Knepley {
2075accc9626SMatthew G. Knepley PetscInt closureSize, cl, dep;
2076accc9626SMatthew G. Knepley
2077accc9626SMatthew G. Knepley PetscCall(DMPlexGetTransitiveClosure(dm, point, PETSC_TRUE, &closureSize, &closure));
2078accc9626SMatthew G. Knepley for (cl = 0; cl < closureSize * 2; cl += 2) {
2079accc9626SMatthew G. Knepley PetscCall(DMLabelGetValue(label, closure[cl], &valA));
2080accc9626SMatthew G. Knepley if (valA == -1) { /* Mark as unsplit */
2081accc9626SMatthew G. Knepley PetscCall(DMPlexGetPointDepth(dm, closure[cl], &dep));
2082accc9626SMatthew G. Knepley PetscCall(DMLabelSetValue(label, closure[cl], shift2 + dep));
2083b6555650SPierre Jolivet } else if ((valA >= shift && valA < shift2) || (valA <= -shift && valA > -shift2)) {
2084accc9626SMatthew G. Knepley PetscCall(DMPlexGetPointDepth(dm, closure[cl], &dep));
2085accc9626SMatthew G. Knepley PetscCall(DMLabelClearValue(label, closure[cl], valA));
2086accc9626SMatthew G. Knepley PetscCall(DMLabelSetValue(label, closure[cl], dep));
2087accc9626SMatthew G. Knepley }
2088accc9626SMatthew G. Knepley }
20890542aa8cSMatthew G. Knepley }
20900542aa8cSMatthew G. Knepley } else {
20910542aa8cSMatthew G. Knepley // Unsplit the incident faces and their closures
20920542aa8cSMatthew G. Knepley PetscInt Ncl, dep, val;
20930542aa8cSMatthew G. Knepley
20940542aa8cSMatthew G. Knepley PetscCall(DMPlexGetTransitiveClosure(dm, point, PETSC_TRUE, &Ncl, &closure));
20950542aa8cSMatthew G. Knepley for (PetscInt cl = 0; cl < Ncl * 2; cl += 2) {
20960542aa8cSMatthew G. Knepley PetscCall(DMLabelGetValue(label, closure[cl], &val));
20970542aa8cSMatthew G. Knepley if (debug) PetscCall(PetscPrintf(PETSC_COMM_SELF, " Point %" PetscInt_FMT ":%" PetscInt_FMT "\n", closure[cl], val));
2098b6555650SPierre Jolivet if (val >= 0 && val <= dim) {
20990542aa8cSMatthew G. Knepley PetscInt Nincl, inval, indep;
21000542aa8cSMatthew G. Knepley
21010542aa8cSMatthew G. Knepley if (debug) PetscCall(PetscPrintf(PETSC_COMM_SELF, " Point %" PetscInt_FMT " is being unsplit\n", closure[cl]));
21020542aa8cSMatthew G. Knepley PetscCall(DMPlexGetPointDepth(dm, closure[cl], &dep));
21030542aa8cSMatthew G. Knepley PetscCall(DMLabelClearValue(label, closure[cl], val));
21040542aa8cSMatthew G. Knepley PetscCall(DMLabelSetValue(label, closure[cl], shift2 + dep));
21050542aa8cSMatthew G. Knepley
21060542aa8cSMatthew G. Knepley PetscCall(DMPlexGetTransitiveClosure(dm, closure[cl], PETSC_TRUE, &Nincl, &inclosure));
21070542aa8cSMatthew G. Knepley for (PetscInt incl = 0; incl < Nincl * 2; incl += 2) {
21080542aa8cSMatthew G. Knepley PetscCall(DMLabelGetValue(label, inclosure[cl], &inval));
2109b6555650SPierre Jolivet if (inval >= 0 && inval <= dim) {
21100542aa8cSMatthew G. Knepley if (debug) PetscCall(PetscPrintf(PETSC_COMM_SELF, " Point %" PetscInt_FMT " is being unsplit\n", inclosure[incl]));
21110542aa8cSMatthew G. Knepley PetscCall(DMPlexGetPointDepth(dm, inclosure[incl], &indep));
21120542aa8cSMatthew G. Knepley PetscCall(DMLabelClearValue(label, inclosure[incl], inval));
21130542aa8cSMatthew G. Knepley PetscCall(DMLabelSetValue(label, inclosure[incl], shift2 + indep));
2114accc9626SMatthew G. Knepley }
2115accc9626SMatthew G. Knepley }
21160542aa8cSMatthew G. Knepley }
21170542aa8cSMatthew G. Knepley }
21180542aa8cSMatthew G. Knepley }
21190542aa8cSMatthew G. Knepley }
21200542aa8cSMatthew G. Knepley PetscCall(DMPlexRestoreTransitiveClosure(dm, 0, PETSC_TRUE, NULL, &inclosure));
21210542aa8cSMatthew G. Knepley PetscCall(DMPlexRestoreTransitiveClosure(dm, 0, PETSC_TRUE, NULL, &closure));
2122accc9626SMatthew G. Knepley PetscCall(ISRestoreIndices(dimIS, &points));
2123accc9626SMatthew G. Knepley PetscCall(ISDestroy(&dimIS));
21243ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS);
2125accc9626SMatthew G. Knepley }
2126accc9626SMatthew G. Knepley
2127cd0c2139SMatthew G Knepley /*@
21280f66a230SMatthew G. Knepley DMPlexLabelCohesiveComplete - Starting with a label marking points on an internal surface, we add all other mesh pieces
2129cd0c2139SMatthew G Knepley to complete the surface
2130cd0c2139SMatthew G Knepley
2131cd0c2139SMatthew G Knepley Input Parameters:
213220f4b53cSBarry Smith + dm - The `DM`
213320f4b53cSBarry Smith . label - A `DMLabel` marking the surface
213420f4b53cSBarry Smith . blabel - A `DMLabel` marking the vertices on the boundary which will not be duplicated, or `NULL` to find them automatically
213520f4b53cSBarry Smith . bvalue - Value of `DMLabel` marking the vertices on the boundary
2136bb55d314SMatthew G. Knepley . flip - Flag to flip the submesh normal and replace points on the other side
21370542aa8cSMatthew G. Knepley . split - Split faces impinging on the surface, rather than clamping the surface boundary
213820f4b53cSBarry Smith - subdm - The `DM` associated with the label, or `NULL`
2139cd0c2139SMatthew G Knepley
2140cd0c2139SMatthew G Knepley Output Parameter:
214120f4b53cSBarry Smith . label - A `DMLabel` marking all surface points
21420f66a230SMatthew G. Knepley
2143cd0c2139SMatthew G Knepley Level: developer
2144cd0c2139SMatthew G Knepley
214520f4b53cSBarry Smith Note:
214620f4b53cSBarry Smith The vertices in blabel are called "unsplit" in the terminology from hybrid cell creation.
214720f4b53cSBarry Smith
21481cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexConstructCohesiveCells()`, `DMPlexLabelComplete()`
2149cd0c2139SMatthew G Knepley @*/
DMPlexLabelCohesiveComplete(DM dm,DMLabel label,DMLabel blabel,PetscInt bvalue,PetscBool flip,PetscBool split,DM subdm)21500542aa8cSMatthew G. Knepley PetscErrorCode DMPlexLabelCohesiveComplete(DM dm, DMLabel label, DMLabel blabel, PetscInt bvalue, PetscBool flip, PetscBool split, DM subdm)
2151d71ae5a4SJacob Faibussowitsch {
2152d90583fdSMatthew G. Knepley DMLabel depthLabel;
2153accc9626SMatthew G. Knepley IS dimIS, subpointIS = NULL;
215447946fd8SMatthew G. Knepley const PetscInt *points, *subpoints;
2155bb55d314SMatthew G. Knepley const PetscInt rev = flip ? -1 : 1;
21560542aa8cSMatthew G. Knepley PetscInt shift = 100, shift2 = 200, shift3 = split ? 300 : 0, dim, depth, numPoints, numSubpoints, p, val;
2157cd0c2139SMatthew G Knepley
2158cd0c2139SMatthew G Knepley PetscFunctionBegin;
21599566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepth(dm, &depth));
21609566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim));
21619566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthLabel(dm, &depthLabel));
216247946fd8SMatthew G. Knepley if (subdm) {
21639566063dSJacob Faibussowitsch PetscCall(DMPlexGetSubpointIS(subdm, &subpointIS));
216447946fd8SMatthew G. Knepley if (subpointIS) {
21659566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(subpointIS, &numSubpoints));
21669566063dSJacob Faibussowitsch PetscCall(ISGetIndices(subpointIS, &subpoints));
216747946fd8SMatthew G. Knepley }
216847946fd8SMatthew G. Knepley }
2169d7c8f101SMatthew G. Knepley /* Mark cell on the fault, and its faces which touch the fault: cell orientation for face gives the side of the fault */
21709566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(label, dim - 1, &dimIS));
2171accc9626SMatthew G. Knepley if (!dimIS) goto divide;
21729566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(dimIS, &numPoints));
21739566063dSJacob Faibussowitsch PetscCall(ISGetIndices(dimIS, &points));
2174d7c8f101SMatthew G. Knepley for (p = 0; p < numPoints; ++p) { /* Loop over fault faces */
2175cd0c2139SMatthew G Knepley const PetscInt *support;
2176cd0c2139SMatthew G Knepley PetscInt supportSize, s;
2177cd0c2139SMatthew G Knepley
21789566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dm, points[p], &supportSize));
2179c4419245SMatthew G. Knepley #if 0
2180c4419245SMatthew G. Knepley if (supportSize != 2) {
2181c4419245SMatthew G. Knepley const PetscInt *lp;
2182c4419245SMatthew G. Knepley PetscInt Nlp, pind;
2183c4419245SMatthew G. Knepley
2184c4419245SMatthew G. Knepley /* Check that for a cell with a single support face, that face is in the SF */
2185c4419245SMatthew G. Knepley /* THis check only works for the remote side. We would need root side information */
21869566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(dm->sf, NULL, &Nlp, &lp, NULL));
21879566063dSJacob Faibussowitsch PetscCall(PetscFindInt(points[p], Nlp, lp, &pind));
218863a3b9bcSJacob Faibussowitsch PetscCheck(pind >= 0,PetscObjectComm((PetscObject) dm), PETSC_ERR_ARG_WRONG, "Split face %" PetscInt_FMT " has %" PetscInt_FMT " != 2 supports, and the face is not shared with another process", points[p], supportSize);
2189c4419245SMatthew G. Knepley }
2190c4419245SMatthew G. Knepley #endif
21919566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(dm, points[p], &support));
2192cd0c2139SMatthew G Knepley for (s = 0; s < supportSize; ++s) {
21930f66a230SMatthew G. Knepley const PetscInt *cone;
2194cd0c2139SMatthew G Knepley PetscInt coneSize, c;
21950f66a230SMatthew G. Knepley PetscBool pos;
2196cd0c2139SMatthew G Knepley
21979566063dSJacob Faibussowitsch PetscCall(GetSurfaceSide_Static(dm, subdm, numSubpoints, subpoints, support[s], points[p], &pos));
21989566063dSJacob Faibussowitsch if (pos) PetscCall(DMLabelSetValue(label, support[s], rev * (shift + dim)));
21999566063dSJacob Faibussowitsch else PetscCall(DMLabelSetValue(label, support[s], -rev * (shift + dim)));
22000f66a230SMatthew G. Knepley if (rev < 0) pos = !pos ? PETSC_TRUE : PETSC_FALSE;
22010f66a230SMatthew G. Knepley /* Put faces touching the fault in the label */
22029566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, support[s], &coneSize));
22039566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, support[s], &cone));
2204cd0c2139SMatthew G Knepley for (c = 0; c < coneSize; ++c) {
2205cd0c2139SMatthew G Knepley const PetscInt point = cone[c];
2206cd0c2139SMatthew G Knepley
22079566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, point, &val));
2208cd0c2139SMatthew G Knepley if (val == -1) {
2209cd0c2139SMatthew G Knepley PetscInt *closure = NULL;
2210cd0c2139SMatthew G Knepley PetscInt closureSize, cl;
2211cd0c2139SMatthew G Knepley
22129566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(dm, point, PETSC_TRUE, &closureSize, &closure));
2213cd0c2139SMatthew G Knepley for (cl = 0; cl < closureSize * 2; cl += 2) {
2214cd0c2139SMatthew G Knepley const PetscInt clp = closure[cl];
2215a0541d8aSMatthew G. Knepley PetscInt bval = -1;
2216cd0c2139SMatthew G Knepley
22179566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, clp, &val));
22189566063dSJacob Faibussowitsch if (blabel) PetscCall(DMLabelGetValue(blabel, clp, &bval));
2219b6555650SPierre Jolivet if (val >= 0 && val < dim - 1 && bval < 0) {
22209566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(label, point, pos == PETSC_TRUE ? shift + dim - 1 : -(shift + dim - 1)));
2221cd0c2139SMatthew G Knepley break;
2222cd0c2139SMatthew G Knepley }
2223cd0c2139SMatthew G Knepley }
22249566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dm, point, PETSC_TRUE, &closureSize, &closure));
2225cd0c2139SMatthew G Knepley }
2226cd0c2139SMatthew G Knepley }
2227cd0c2139SMatthew G Knepley }
2228cd0c2139SMatthew G Knepley }
2229accc9626SMatthew G. Knepley PetscCall(ISRestoreIndices(dimIS, &points));
2230accc9626SMatthew G. Knepley PetscCall(ISDestroy(&dimIS));
2231a0541d8aSMatthew G. Knepley /* Mark boundary points as unsplit */
223286200784SMatthew G. Knepley if (blabel) {
2233accc9626SMatthew G. Knepley IS bdIS;
2234accc9626SMatthew G. Knepley
2235caf9e14dSMatthew G. Knepley PetscCall(DMLabelGetStratumIS(blabel, bvalue, &bdIS));
2236accc9626SMatthew G. Knepley PetscCall(ISGetLocalSize(bdIS, &numPoints));
2237accc9626SMatthew G. Knepley PetscCall(ISGetIndices(bdIS, &points));
2238a0541d8aSMatthew G. Knepley for (p = 0; p < numPoints; ++p) {
2239a0541d8aSMatthew G. Knepley const PetscInt point = points[p];
2240a0541d8aSMatthew G. Knepley PetscInt val, bval;
2241a0541d8aSMatthew G. Knepley
22429566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(blabel, point, &bval));
2243a0541d8aSMatthew G. Knepley if (bval >= 0) {
22449566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, point, &val));
2245f7019248SMatthew G. Knepley if ((val < 0) || (val > dim)) {
2246f7019248SMatthew G. Knepley /* This could be a point added from splitting a vertex on an adjacent fault, otherwise its just wrong */
22479566063dSJacob Faibussowitsch PetscCall(DMLabelClearValue(blabel, point, bval));
2248f7019248SMatthew G. Knepley }
2249f7019248SMatthew G. Knepley }
2250f7019248SMatthew G. Knepley }
2251f7019248SMatthew G. Knepley for (p = 0; p < numPoints; ++p) {
2252f7019248SMatthew G. Knepley const PetscInt point = points[p];
2253f7019248SMatthew G. Knepley PetscInt val, bval;
2254f7019248SMatthew G. Knepley
22559566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(blabel, point, &bval));
2256f7019248SMatthew G. Knepley if (bval >= 0) {
225786200784SMatthew G. Knepley const PetscInt *cone, *support;
225886200784SMatthew G. Knepley PetscInt coneSize, supportSize, s, valA, valB, valE;
225986200784SMatthew G. Knepley
2260a0541d8aSMatthew G. Knepley /* Mark as unsplit */
22619566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, point, &val));
2262e1a13daeSMatthew G. Knepley PetscCheck(val >= 0 && val <= dim, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Point %" PetscInt_FMT " has label value %" PetscInt_FMT ", should be part of the fault", point, val);
22639566063dSJacob Faibussowitsch PetscCall(DMLabelClearValue(label, point, val));
22649566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(label, point, shift2 + val));
22652c06a818SMatthew G. Knepley /* Check for cross-edge
22662c06a818SMatthew G. Knepley A cross-edge has endpoints which are both on the boundary of the surface, but the edge itself is not. */
226786200784SMatthew G. Knepley if (val != 0) continue;
22689566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(dm, point, &support));
22699566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dm, point, &supportSize));
227086200784SMatthew G. Knepley for (s = 0; s < supportSize; ++s) {
22719566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, support[s], &cone));
22729566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, support[s], &coneSize));
227363a3b9bcSJacob Faibussowitsch PetscCheck(coneSize == 2, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Edge %" PetscInt_FMT " has %" PetscInt_FMT " vertices != 2", support[s], coneSize);
22749566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(blabel, cone[0], &valA));
22759566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(blabel, cone[1], &valB));
22769566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(blabel, support[s], &valE));
2277b6555650SPierre Jolivet if (valE < 0 && valA >= 0 && valB >= 0 && cone[0] != cone[1]) PetscCall(DMLabelSetValue(blabel, support[s], 2));
227886200784SMatthew G. Knepley }
2279a0541d8aSMatthew G. Knepley }
2280a0541d8aSMatthew G. Knepley }
2281accc9626SMatthew G. Knepley PetscCall(ISRestoreIndices(bdIS, &points));
2282accc9626SMatthew G. Knepley PetscCall(ISDestroy(&bdIS));
2283a0541d8aSMatthew G. Knepley }
2284b6dfa339SMatthew G. Knepley /* Mark ghost fault cells */
2285b6dfa339SMatthew G. Knepley {
2286b6dfa339SMatthew G. Knepley PetscSF sf;
2287b6dfa339SMatthew G. Knepley const PetscInt *leaves;
2288b6dfa339SMatthew G. Knepley PetscInt Nl, l;
2289b6dfa339SMatthew G. Knepley
2290b6dfa339SMatthew G. Knepley PetscCall(DMGetPointSF(dm, &sf));
2291b6dfa339SMatthew G. Knepley PetscCall(PetscSFGetGraph(sf, NULL, &Nl, &leaves, NULL));
2292accc9626SMatthew G. Knepley PetscCall(DMLabelGetStratumIS(label, dim - 1, &dimIS));
2293accc9626SMatthew G. Knepley if (!dimIS) goto divide;
2294accc9626SMatthew G. Knepley PetscCall(ISGetLocalSize(dimIS, &numPoints));
2295accc9626SMatthew G. Knepley PetscCall(ISGetIndices(dimIS, &points));
2296b6dfa339SMatthew G. Knepley if (Nl > 0) {
2297b6dfa339SMatthew G. Knepley for (p = 0; p < numPoints; ++p) {
2298b6dfa339SMatthew G. Knepley const PetscInt point = points[p];
2299b6dfa339SMatthew G. Knepley PetscInt val;
2300b6dfa339SMatthew G. Knepley
2301b6dfa339SMatthew G. Knepley PetscCall(PetscFindInt(point, Nl, leaves, &l));
2302b6dfa339SMatthew G. Knepley if (l >= 0) {
2303b6dfa339SMatthew G. Knepley PetscInt *closure = NULL;
2304b6dfa339SMatthew G. Knepley PetscInt closureSize, cl;
2305b6dfa339SMatthew G. Knepley
2306b6dfa339SMatthew G. Knepley PetscCall(DMLabelGetValue(label, point, &val));
2307b6dfa339SMatthew G. Knepley PetscCheck((val == dim - 1) || (val == shift2 + dim - 1), PETSC_COMM_SELF, PETSC_ERR_PLIB, "Point %" PetscInt_FMT " has label value %" PetscInt_FMT ", should be a fault face", point, val);
2308b6dfa339SMatthew G. Knepley PetscCall(DMLabelClearValue(label, point, val));
2309b6dfa339SMatthew G. Knepley PetscCall(DMLabelSetValue(label, point, shift3 + val));
2310b6dfa339SMatthew G. Knepley PetscCall(DMPlexGetTransitiveClosure(dm, point, PETSC_TRUE, &closureSize, &closure));
2311accc9626SMatthew G. Knepley for (cl = 2; cl < closureSize * 2; cl += 2) {
2312b6dfa339SMatthew G. Knepley const PetscInt clp = closure[cl];
2313b6dfa339SMatthew G. Knepley
2314b6dfa339SMatthew G. Knepley PetscCall(DMLabelGetValue(label, clp, &val));
2315b6dfa339SMatthew G. Knepley PetscCheck(val != -1, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Point %" PetscInt_FMT " is missing from label, but is in the closure of a fault face", point);
2316b6dfa339SMatthew G. Knepley PetscCall(DMLabelClearValue(label, clp, val));
2317b6dfa339SMatthew G. Knepley PetscCall(DMLabelSetValue(label, clp, shift3 + val));
2318b6dfa339SMatthew G. Knepley }
2319b6dfa339SMatthew G. Knepley PetscCall(DMPlexRestoreTransitiveClosure(dm, point, PETSC_TRUE, &closureSize, &closure));
2320b6dfa339SMatthew G. Knepley }
2321b6dfa339SMatthew G. Knepley }
2322b6dfa339SMatthew G. Knepley }
2323b6dfa339SMatthew G. Knepley PetscCall(ISRestoreIndices(dimIS, &points));
2324b6dfa339SMatthew G. Knepley PetscCall(ISDestroy(&dimIS));
2325accc9626SMatthew G. Knepley }
2326accc9626SMatthew G. Knepley divide:
2327b6dfa339SMatthew G. Knepley if (subpointIS) PetscCall(ISRestoreIndices(subpointIS, &subpoints));
2328accc9626SMatthew G. Knepley PetscCall(DMPlexLabelFaultHalo(dm, label));
23290542aa8cSMatthew G. Knepley PetscCall(CheckFaultEdge_Private(dm, label, split));
23303ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS);
2331cd0c2139SMatthew G Knepley }
2332cd0c2139SMatthew G Knepley
2333720e594eSMatthew G. Knepley /* Check that no cell have all vertices on the fault */
DMPlexCheckValidSubmesh_Private(DM dm,DMLabel label,DM subdm)233466976f2fSJacob Faibussowitsch static PetscErrorCode DMPlexCheckValidSubmesh_Private(DM dm, DMLabel label, DM subdm)
2335d71ae5a4SJacob Faibussowitsch {
2336720e594eSMatthew G. Knepley IS subpointIS;
2337720e594eSMatthew G. Knepley const PetscInt *dmpoints;
2338720e594eSMatthew G. Knepley PetscInt defaultValue, cStart, cEnd, c, vStart, vEnd;
2339720e594eSMatthew G. Knepley
2340720e594eSMatthew G. Knepley PetscFunctionBegin;
23413ba16761SJacob Faibussowitsch if (!label) PetscFunctionReturn(PETSC_SUCCESS);
23429566063dSJacob Faibussowitsch PetscCall(DMLabelGetDefaultValue(label, &defaultValue));
23439566063dSJacob Faibussowitsch PetscCall(DMPlexGetSubpointIS(subdm, &subpointIS));
23443ba16761SJacob Faibussowitsch if (!subpointIS) PetscFunctionReturn(PETSC_SUCCESS);
23459566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(subdm, 0, &cStart, &cEnd));
23469566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthStratum(dm, 0, &vStart, &vEnd));
23479566063dSJacob Faibussowitsch PetscCall(ISGetIndices(subpointIS, &dmpoints));
2348720e594eSMatthew G. Knepley for (c = cStart; c < cEnd; ++c) {
2349720e594eSMatthew G. Knepley PetscBool invalidCell = PETSC_TRUE;
2350720e594eSMatthew G. Knepley PetscInt *closure = NULL;
2351720e594eSMatthew G. Knepley PetscInt closureSize, cl;
2352720e594eSMatthew G. Knepley
23539566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(dm, dmpoints[c], PETSC_TRUE, &closureSize, &closure));
2354720e594eSMatthew G. Knepley for (cl = 0; cl < closureSize * 2; cl += 2) {
2355720e594eSMatthew G. Knepley PetscInt value = 0;
2356720e594eSMatthew G. Knepley
2357720e594eSMatthew G. Knepley if ((closure[cl] < vStart) || (closure[cl] >= vEnd)) continue;
23589566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, closure[cl], &value));
23599371c9d4SSatish Balay if (value == defaultValue) {
23609371c9d4SSatish Balay invalidCell = PETSC_FALSE;
23619371c9d4SSatish Balay break;
23629371c9d4SSatish Balay }
2363720e594eSMatthew G. Knepley }
23649566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dm, dmpoints[c], PETSC_TRUE, &closureSize, &closure));
2365720e594eSMatthew G. Knepley if (invalidCell) {
23669566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(subpointIS, &dmpoints));
23679566063dSJacob Faibussowitsch PetscCall(ISDestroy(&subpointIS));
23689566063dSJacob Faibussowitsch PetscCall(DMDestroy(&subdm));
236963a3b9bcSJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Ambiguous submesh. Cell %" PetscInt_FMT " has all of its vertices on the submesh.", dmpoints[c]);
2370720e594eSMatthew G. Knepley }
2371720e594eSMatthew G. Knepley }
23729566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(subpointIS, &dmpoints));
23733ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS);
2374720e594eSMatthew G. Knepley }
2375720e594eSMatthew G. Knepley
2376c08575a3SMatthew G. Knepley /*@
23773cf72582SMatthew G. Knepley DMPlexCreateHybridMesh - Create a mesh with hybrid cells along an internal interface
23783cf72582SMatthew G. Knepley
237920f4b53cSBarry Smith Collective
23803cf72582SMatthew G. Knepley
23813cf72582SMatthew G. Knepley Input Parameters:
238220f4b53cSBarry Smith + dm - The original `DM`
2383720e594eSMatthew G. Knepley . label - The label specifying the interface vertices
2384caf9e14dSMatthew G. Knepley . bdlabel - The optional label specifying the interface boundary vertices
2385caf9e14dSMatthew G. Knepley - bdvalue - Value of optional label specifying the interface boundary vertices
23863cf72582SMatthew G. Knepley
23873cf72582SMatthew G. Knepley Output Parameters:
238820f4b53cSBarry Smith + hybridLabel - The label fully marking the interface, or `NULL` if no output is desired
238920f4b53cSBarry Smith . splitLabel - The label containing the split points, or `NULL` if no output is desired
239020f4b53cSBarry Smith . dmInterface - The new interface `DM`, or `NULL`
239120f4b53cSBarry Smith - dmHybrid - The new `DM` with cohesive cells
23923cf72582SMatthew G. Knepley
239320f4b53cSBarry Smith Level: developer
239420f4b53cSBarry Smith
239520f4b53cSBarry Smith Note:
239620f4b53cSBarry Smith The hybridLabel indicates what parts of the original mesh impinged on the division surface. For points
23976eccb800SMatthew Knepley directly on the division surface, they are labeled with their dimension, so an edge 7 on the division surface would be
23986eccb800SMatthew Knepley 7 (1) in hybridLabel. For points that impinge from the positive side, they are labeled with 100+dim, so an edge 6 with
23996eccb800SMatthew Knepley one vertex 3 on the surface would be 6 (101) and 3 (0) in hybridLabel. If an edge 9 from the negative side of the
24006eccb800SMatthew Knepley surface also hits vertex 3, it would be 9 (-101) in hybridLabel.
24016eccb800SMatthew Knepley
24026eccb800SMatthew Knepley The splitLabel indicates what points in the new hybrid mesh were the result of splitting points in the original
240340cdb708SMatthew Knepley mesh. The label value is $\pm 100+dim$ for each point. For example, if two edges 10 and 14 in the hybrid resulting from
24046eccb800SMatthew Knepley splitting an edge in the original mesh, you would have 10 (101) and 14 (-101) in the splitLabel.
24056eccb800SMatthew Knepley
240620f4b53cSBarry Smith The dmInterface is a `DM` built from the original division surface. It has a label which can be retrieved using
240720f4b53cSBarry Smith `DMPlexGetSubpointMap()` which maps each point back to the point in the surface of the original mesh.
24086eccb800SMatthew Knepley
24091cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexConstructCohesiveCells()`, `DMPlexLabelCohesiveComplete()`, `DMPlexGetSubpointMap()`, `DMCreate()`
24103cf72582SMatthew G. Knepley @*/
DMPlexCreateHybridMesh(DM dm,DMLabel label,DMLabel bdlabel,PetscInt bdvalue,DMLabel * hybridLabel,DMLabel * splitLabel,DM * dmInterface,DM * dmHybrid)2411d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexCreateHybridMesh(DM dm, DMLabel label, DMLabel bdlabel, PetscInt bdvalue, DMLabel *hybridLabel, DMLabel *splitLabel, DM *dmInterface, DM *dmHybrid)
2412d71ae5a4SJacob Faibussowitsch {
24133cf72582SMatthew G. Knepley DM idm;
24147db7e0a7SMatthew G. Knepley DMLabel subpointMap, hlabel, slabel = NULL;
24153cf72582SMatthew G. Knepley PetscInt dim;
24163cf72582SMatthew G. Knepley
24173cf72582SMatthew G. Knepley PetscFunctionBegin;
24183cf72582SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
24194f572ea9SToby Isaac if (label) PetscAssertPointer(label, 2);
24204f572ea9SToby Isaac if (bdlabel) PetscAssertPointer(bdlabel, 3);
24214f572ea9SToby Isaac if (hybridLabel) PetscAssertPointer(hybridLabel, 5);
24224f572ea9SToby Isaac if (splitLabel) PetscAssertPointer(splitLabel, 6);
24234f572ea9SToby Isaac if (dmInterface) PetscAssertPointer(dmInterface, 7);
24244f572ea9SToby Isaac PetscAssertPointer(dmHybrid, 8);
24259566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim));
24269566063dSJacob Faibussowitsch PetscCall(DMPlexCreateSubmesh(dm, label, 1, PETSC_FALSE, &idm));
24279566063dSJacob Faibussowitsch PetscCall(DMPlexCheckValidSubmesh_Private(dm, label, idm));
24289566063dSJacob Faibussowitsch PetscCall(DMPlexOrient(idm));
24299566063dSJacob Faibussowitsch PetscCall(DMPlexGetSubpointMap(idm, &subpointMap));
24309566063dSJacob Faibussowitsch PetscCall(DMLabelDuplicate(subpointMap, &hlabel));
24319566063dSJacob Faibussowitsch PetscCall(DMLabelClearStratum(hlabel, dim));
24327db7e0a7SMatthew G. Knepley if (splitLabel) {
24337db7e0a7SMatthew G. Knepley const char *name;
24347db7e0a7SMatthew G. Knepley char sname[PETSC_MAX_PATH_LEN];
24357db7e0a7SMatthew G. Knepley
24369566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)hlabel, &name));
2437c6a7a370SJeremy L Thompson PetscCall(PetscStrncpy(sname, name, sizeof(sname)));
2438c6a7a370SJeremy L Thompson PetscCall(PetscStrlcat(sname, " split", sizeof(sname)));
24399566063dSJacob Faibussowitsch PetscCall(DMLabelCreate(PETSC_COMM_SELF, sname, &slabel));
24407db7e0a7SMatthew G. Knepley }
24410542aa8cSMatthew G. Knepley PetscCall(DMPlexLabelCohesiveComplete(dm, hlabel, bdlabel, bdvalue, PETSC_FALSE, PETSC_TRUE, idm));
24429371c9d4SSatish Balay if (dmInterface) {
24439371c9d4SSatish Balay *dmInterface = idm;
24449371c9d4SSatish Balay } else PetscCall(DMDestroy(&idm));
24459566063dSJacob Faibussowitsch PetscCall(DMPlexConstructCohesiveCells(dm, hlabel, slabel, dmHybrid));
24465de52c6dSVaclav Hapla PetscCall(DMPlexCopy_Internal(dm, PETSC_TRUE, PETSC_TRUE, *dmHybrid));
24473cf72582SMatthew G. Knepley if (hybridLabel) *hybridLabel = hlabel;
24489566063dSJacob Faibussowitsch else PetscCall(DMLabelDestroy(&hlabel));
24497db7e0a7SMatthew G. Knepley if (splitLabel) *splitLabel = slabel;
24504a7ee7d0SMatthew G. Knepley {
24514a7ee7d0SMatthew G. Knepley DM cdm;
24524a7ee7d0SMatthew G. Knepley DMLabel ctLabel;
24534a7ee7d0SMatthew G. Knepley
24544a7ee7d0SMatthew G. Knepley /* We need to somehow share the celltype label with the coordinate dm */
24559566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDM(*dmHybrid, &cdm));
24569566063dSJacob Faibussowitsch PetscCall(DMPlexGetCellTypeLabel(*dmHybrid, &ctLabel));
24579566063dSJacob Faibussowitsch PetscCall(DMSetLabel(cdm, ctLabel));
24584a7ee7d0SMatthew G. Knepley }
24593ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS);
2460cd0c2139SMatthew G Knepley }
2461cd0c2139SMatthew G Knepley
2462efa14ee0SMatthew G Knepley /* Here we need the explicit assumption that:
2463efa14ee0SMatthew G Knepley
2464efa14ee0SMatthew G Knepley For any marked cell, the marked vertices constitute a single face
2465efa14ee0SMatthew G Knepley */
DMPlexMarkSubmesh_Uninterpolated(DM dm,DMLabel vertexLabel,PetscInt value,DMLabel subpointMap,PetscInt * numFaces,PetscInt * nFV,DM subdm)2466d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexMarkSubmesh_Uninterpolated(DM dm, DMLabel vertexLabel, PetscInt value, DMLabel subpointMap, PetscInt *numFaces, PetscInt *nFV, DM subdm)
2467d71ae5a4SJacob Faibussowitsch {
2468fed694aaSMatthew G. Knepley IS subvertexIS = NULL;
2469efa14ee0SMatthew G Knepley const PetscInt *subvertices;
2470412e9a14SMatthew G. Knepley PetscInt *pStart, *pEnd, pSize;
2471efa14ee0SMatthew G Knepley PetscInt depth, dim, d, numSubVerticesInitial = 0, v;
2472efa14ee0SMatthew G Knepley
2473efa14ee0SMatthew G Knepley PetscFunctionBegin;
2474efa14ee0SMatthew G Knepley *numFaces = 0;
2475efa14ee0SMatthew G Knepley *nFV = 0;
24769566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepth(dm, &depth));
24779566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim));
247877d178adSMatthew G. Knepley pSize = PetscMax(depth, dim) + 1;
24799566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(pSize, &pStart, pSize, &pEnd));
248048a46eb9SPierre Jolivet for (d = 0; d <= depth; ++d) PetscCall(DMPlexGetSimplexOrBoxCells(dm, depth - d, &pStart[d], &pEnd[d]));
2481efa14ee0SMatthew G Knepley /* Loop over initial vertices and mark all faces in the collective star() */
24829566063dSJacob Faibussowitsch if (vertexLabel) PetscCall(DMLabelGetStratumIS(vertexLabel, value, &subvertexIS));
2483efa14ee0SMatthew G Knepley if (subvertexIS) {
24849566063dSJacob Faibussowitsch PetscCall(ISGetSize(subvertexIS, &numSubVerticesInitial));
24859566063dSJacob Faibussowitsch PetscCall(ISGetIndices(subvertexIS, &subvertices));
2486efa14ee0SMatthew G Knepley }
2487efa14ee0SMatthew G Knepley for (v = 0; v < numSubVerticesInitial; ++v) {
2488efa14ee0SMatthew G Knepley const PetscInt vertex = subvertices[v];
24890298fd71SBarry Smith PetscInt *star = NULL;
2490efa14ee0SMatthew G Knepley PetscInt starSize, s, numCells = 0, c;
2491efa14ee0SMatthew G Knepley
24929566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(dm, vertex, PETSC_FALSE, &starSize, &star));
2493efa14ee0SMatthew G Knepley for (s = 0; s < starSize * 2; s += 2) {
2494efa14ee0SMatthew G Knepley const PetscInt point = star[s];
2495b6555650SPierre Jolivet if (point >= pStart[depth] && point < pEnd[depth]) star[numCells++] = point;
2496efa14ee0SMatthew G Knepley }
2497efa14ee0SMatthew G Knepley for (c = 0; c < numCells; ++c) {
2498efa14ee0SMatthew G Knepley const PetscInt cell = star[c];
24990298fd71SBarry Smith PetscInt *closure = NULL;
2500efa14ee0SMatthew G Knepley PetscInt closureSize, cl;
2501efa14ee0SMatthew G Knepley PetscInt cellLoc, numCorners = 0, faceSize = 0;
2502efa14ee0SMatthew G Knepley
25039566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(subpointMap, cell, &cellLoc));
250465560c7fSMatthew G Knepley if (cellLoc == 2) continue;
250563a3b9bcSJacob Faibussowitsch PetscCheck(cellLoc < 0, PetscObjectComm((PetscObject)dm), PETSC_ERR_PLIB, "Cell %" PetscInt_FMT " has dimension %" PetscInt_FMT " in the surface label", cell, cellLoc);
25069566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(dm, cell, PETSC_TRUE, &closureSize, &closure));
2507efa14ee0SMatthew G Knepley for (cl = 0; cl < closureSize * 2; cl += 2) {
2508efa14ee0SMatthew G Knepley const PetscInt point = closure[cl];
2509efa14ee0SMatthew G Knepley PetscInt vertexLoc;
2510efa14ee0SMatthew G Knepley
2511b6555650SPierre Jolivet if (point >= pStart[0] && point < pEnd[0]) {
2512efa14ee0SMatthew G Knepley ++numCorners;
25139566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(vertexLabel, point, &vertexLoc));
2514830e53efSMatthew G. Knepley if (vertexLoc == value) closure[faceSize++] = point;
2515efa14ee0SMatthew G Knepley }
2516efa14ee0SMatthew G Knepley }
25174ad8454bSPierre Jolivet if (!*nFV) PetscCall(DMPlexGetNumFaceVertices(dm, dim, numCorners, nFV));
251863a3b9bcSJacob Faibussowitsch PetscCheck(faceSize <= *nFV, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Invalid submesh: Too many vertices %" PetscInt_FMT " of an element on the surface", faceSize);
2519efa14ee0SMatthew G Knepley if (faceSize == *nFV) {
2520007baee2SMatthew G. Knepley const PetscInt *cells = NULL;
2521007baee2SMatthew G. Knepley PetscInt numCells, nc;
2522007baee2SMatthew G. Knepley
2523efa14ee0SMatthew G Knepley ++(*numFaces);
252448a46eb9SPierre Jolivet for (cl = 0; cl < faceSize; ++cl) PetscCall(DMLabelSetValue(subpointMap, closure[cl], 0));
25259566063dSJacob Faibussowitsch PetscCall(DMPlexGetJoin(dm, faceSize, closure, &numCells, &cells));
252648a46eb9SPierre Jolivet for (nc = 0; nc < numCells; ++nc) PetscCall(DMLabelSetValue(subpointMap, cells[nc], 2));
25279566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreJoin(dm, faceSize, closure, &numCells, &cells));
2528efa14ee0SMatthew G Knepley }
25299566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dm, cell, PETSC_TRUE, &closureSize, &closure));
2530efa14ee0SMatthew G Knepley }
25319566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dm, vertex, PETSC_FALSE, &starSize, &star));
2532efa14ee0SMatthew G Knepley }
253348a46eb9SPierre Jolivet if (subvertexIS) PetscCall(ISRestoreIndices(subvertexIS, &subvertices));
25349566063dSJacob Faibussowitsch PetscCall(ISDestroy(&subvertexIS));
25359566063dSJacob Faibussowitsch PetscCall(PetscFree2(pStart, pEnd));
25363ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS);
2537efa14ee0SMatthew G Knepley }
2538efa14ee0SMatthew G Knepley
DMPlexMarkSubmesh_Interpolated(DM dm,DMLabel vertexLabel,PetscInt value,PetscBool markedFaces,PetscBool addCells,DMLabel subpointMap,DM subdm)25395390be7dSMatthew G. Knepley PetscErrorCode DMPlexMarkSubmesh_Interpolated(DM dm, DMLabel vertexLabel, PetscInt value, PetscBool markedFaces, PetscBool addCells, DMLabel subpointMap, DM subdm)
2540d71ae5a4SJacob Faibussowitsch {
254134b4c39eSMatthew G. Knepley IS subvertexIS = NULL;
2542efa14ee0SMatthew G Knepley const PetscInt *subvertices;
2543412e9a14SMatthew G. Knepley PetscInt *pStart, *pEnd;
2544efa14ee0SMatthew G Knepley PetscInt dim, d, numSubVerticesInitial = 0, v;
2545efa14ee0SMatthew G Knepley
2546efa14ee0SMatthew G Knepley PetscFunctionBegin;
25479566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim));
25489566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(dim + 1, &pStart, dim + 1, &pEnd));
254948a46eb9SPierre Jolivet for (d = 0; d <= dim; ++d) PetscCall(DMPlexGetSimplexOrBoxCells(dm, dim - d, &pStart[d], &pEnd[d]));
2550efa14ee0SMatthew G Knepley /* Loop over initial vertices and mark all faces in the collective star() */
255134b4c39eSMatthew G. Knepley if (vertexLabel) {
25529566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(vertexLabel, value, &subvertexIS));
2553efa14ee0SMatthew G Knepley if (subvertexIS) {
25549566063dSJacob Faibussowitsch PetscCall(ISGetSize(subvertexIS, &numSubVerticesInitial));
25559566063dSJacob Faibussowitsch PetscCall(ISGetIndices(subvertexIS, &subvertices));
2556efa14ee0SMatthew G Knepley }
255734b4c39eSMatthew G. Knepley }
2558efa14ee0SMatthew G Knepley for (v = 0; v < numSubVerticesInitial; ++v) {
2559efa14ee0SMatthew G Knepley const PetscInt vertex = subvertices[v];
25600298fd71SBarry Smith PetscInt *star = NULL;
2561efa14ee0SMatthew G Knepley PetscInt starSize, s, numFaces = 0, f;
2562efa14ee0SMatthew G Knepley
25639566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(dm, vertex, PETSC_FALSE, &starSize, &star));
2564efa14ee0SMatthew G Knepley for (s = 0; s < starSize * 2; s += 2) {
2565efa14ee0SMatthew G Knepley const PetscInt point = star[s];
2566158acfadSMatthew G. Knepley PetscInt faceLoc;
2567158acfadSMatthew G. Knepley
2568b6555650SPierre Jolivet if (point >= pStart[dim - 1] && point < pEnd[dim - 1]) {
2569158acfadSMatthew G. Knepley if (markedFaces) {
25709566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(vertexLabel, point, &faceLoc));
2571158acfadSMatthew G. Knepley if (faceLoc < 0) continue;
2572158acfadSMatthew G. Knepley }
2573158acfadSMatthew G. Knepley star[numFaces++] = point;
2574158acfadSMatthew G. Knepley }
2575efa14ee0SMatthew G Knepley }
2576efa14ee0SMatthew G Knepley for (f = 0; f < numFaces; ++f) {
2577efa14ee0SMatthew G Knepley const PetscInt face = star[f];
25780298fd71SBarry Smith PetscInt *closure = NULL;
2579efa14ee0SMatthew G Knepley PetscInt closureSize, c;
2580efa14ee0SMatthew G Knepley PetscInt faceLoc;
2581efa14ee0SMatthew G Knepley
25829566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(subpointMap, face, &faceLoc));
2583efa14ee0SMatthew G Knepley if (faceLoc == dim - 1) continue;
258463a3b9bcSJacob Faibussowitsch PetscCheck(faceLoc < 0, PetscObjectComm((PetscObject)dm), PETSC_ERR_PLIB, "Face %" PetscInt_FMT " has dimension %" PetscInt_FMT " in the surface label", face, faceLoc);
25859566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(dm, face, PETSC_TRUE, &closureSize, &closure));
2586efa14ee0SMatthew G Knepley for (c = 0; c < closureSize * 2; c += 2) {
2587efa14ee0SMatthew G Knepley const PetscInt point = closure[c];
2588efa14ee0SMatthew G Knepley PetscInt vertexLoc;
2589efa14ee0SMatthew G Knepley
2590b6555650SPierre Jolivet if (point >= pStart[0] && point < pEnd[0]) {
25919566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(vertexLabel, point, &vertexLoc));
2592830e53efSMatthew G. Knepley if (vertexLoc != value) break;
2593efa14ee0SMatthew G Knepley }
2594efa14ee0SMatthew G Knepley }
2595efa14ee0SMatthew G Knepley if (c == closureSize * 2) {
2596efa14ee0SMatthew G Knepley const PetscInt *support;
2597efa14ee0SMatthew G Knepley PetscInt supportSize, s;
2598efa14ee0SMatthew G Knepley
2599efa14ee0SMatthew G Knepley for (c = 0; c < closureSize * 2; c += 2) {
2600efa14ee0SMatthew G Knepley const PetscInt point = closure[c];
2601efa14ee0SMatthew G Knepley
2602efa14ee0SMatthew G Knepley for (d = 0; d < dim; ++d) {
2603b6555650SPierre Jolivet if (point >= pStart[d] && point < pEnd[d]) {
26049566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(subpointMap, point, d));
2605efa14ee0SMatthew G Knepley break;
2606efa14ee0SMatthew G Knepley }
2607efa14ee0SMatthew G Knepley }
2608efa14ee0SMatthew G Knepley }
26099566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dm, face, &supportSize));
26109566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(dm, face, &support));
26115390be7dSMatthew G. Knepley if (addCells)
261248a46eb9SPierre Jolivet for (s = 0; s < supportSize; ++s) PetscCall(DMLabelSetValue(subpointMap, support[s], dim));
2613efa14ee0SMatthew G Knepley }
26149566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dm, face, PETSC_TRUE, &closureSize, &closure));
2615efa14ee0SMatthew G Knepley }
26169566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dm, vertex, PETSC_FALSE, &starSize, &star));
2617efa14ee0SMatthew G Knepley }
26189566063dSJacob Faibussowitsch if (subvertexIS) PetscCall(ISRestoreIndices(subvertexIS, &subvertices));
26199566063dSJacob Faibussowitsch PetscCall(ISDestroy(&subvertexIS));
26209566063dSJacob Faibussowitsch PetscCall(PetscFree2(pStart, pEnd));
26213ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS);
2622efa14ee0SMatthew G Knepley }
2623efa14ee0SMatthew G Knepley
DMPlexMarkCohesiveSubmesh_Uninterpolated(DM dm,PetscBool hasLagrange,const char labelname[],PetscInt value,DMLabel subpointMap,PetscInt * numFaces,PetscInt * nFV,PetscInt * subCells[],DM subdm)2624d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexMarkCohesiveSubmesh_Uninterpolated(DM dm, PetscBool hasLagrange, const char labelname[], PetscInt value, DMLabel subpointMap, PetscInt *numFaces, PetscInt *nFV, PetscInt *subCells[], DM subdm)
2625d71ae5a4SJacob Faibussowitsch {
262627c04023SMatthew G. Knepley DMLabel label = NULL;
2627766ab985SMatthew G. Knepley const PetscInt *cone;
26289fc93327SToby Isaac PetscInt dim, cMax, cEnd, c, subc = 0, p, coneSize = -1;
2629766ab985SMatthew G. Knepley
2630812bfc34SJed Brown PetscFunctionBegin;
2631c0ed958bSJed Brown *numFaces = 0;
2632c0ed958bSJed Brown *nFV = 0;
26339566063dSJacob Faibussowitsch if (labelname) PetscCall(DMGetLabel(dm, labelname, &label));
2634fed694aaSMatthew G. Knepley *subCells = NULL;
26359566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim));
26369566063dSJacob Faibussowitsch PetscCall(DMPlexGetTensorPrismBounds_Internal(dm, dim, &cMax, &cEnd));
26373ba16761SJacob Faibussowitsch if (cMax < 0) PetscFunctionReturn(PETSC_SUCCESS);
263827c04023SMatthew G. Knepley if (label) {
263927c04023SMatthew G. Knepley for (c = cMax; c < cEnd; ++c) {
264027c04023SMatthew G. Knepley PetscInt val;
264127c04023SMatthew G. Knepley
26429566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, c, &val));
264327c04023SMatthew G. Knepley if (val == value) {
264427c04023SMatthew G. Knepley ++(*numFaces);
26459566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, c, &coneSize));
264627c04023SMatthew G. Knepley }
264727c04023SMatthew G. Knepley }
264827c04023SMatthew G. Knepley } else {
2649766ab985SMatthew G. Knepley *numFaces = cEnd - cMax;
26509566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, cMax, &coneSize));
265127c04023SMatthew G. Knepley }
26529566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(*numFaces * 2, subCells));
26534ad8454bSPierre Jolivet if (!*numFaces) PetscFunctionReturn(PETSC_SUCCESS);
26549fc93327SToby Isaac *nFV = hasLagrange ? coneSize / 3 : coneSize / 2;
2655766ab985SMatthew G. Knepley for (c = cMax; c < cEnd; ++c) {
2656766ab985SMatthew G. Knepley const PetscInt *cells;
2657766ab985SMatthew G. Knepley PetscInt numCells;
2658766ab985SMatthew G. Knepley
265927c04023SMatthew G. Knepley if (label) {
266027c04023SMatthew G. Knepley PetscInt val;
266127c04023SMatthew G. Knepley
26629566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, c, &val));
266327c04023SMatthew G. Knepley if (val != value) continue;
266427c04023SMatthew G. Knepley }
26659566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, c, &cone));
266648a46eb9SPierre Jolivet for (p = 0; p < *nFV; ++p) PetscCall(DMLabelSetValue(subpointMap, cone[p], 0));
2667766ab985SMatthew G. Knepley /* Negative face */
26689566063dSJacob Faibussowitsch PetscCall(DMPlexGetJoin(dm, *nFV, cone, &numCells, &cells));
266927234c99SMatthew G. Knepley /* Not true in parallel
267008401ef6SPierre Jolivet PetscCheck(numCells == 2,PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Cohesive cells should separate two cells"); */
2671766ab985SMatthew G. Knepley for (p = 0; p < numCells; ++p) {
26729566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(subpointMap, cells[p], 2));
267327234c99SMatthew G. Knepley (*subCells)[subc++] = cells[p];
2674766ab985SMatthew G. Knepley }
26759566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreJoin(dm, *nFV, cone, &numCells, &cells));
2676766ab985SMatthew G. Knepley /* Positive face is not included */
2677766ab985SMatthew G. Knepley }
26783ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS);
2679766ab985SMatthew G. Knepley }
2680766ab985SMatthew G. Knepley
DMPlexMarkCohesiveSubmesh_Interpolated(DM dm,DMLabel label,PetscInt value,DMLabel subpointMap,DM subdm)2681d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexMarkCohesiveSubmesh_Interpolated(DM dm, DMLabel label, PetscInt value, DMLabel subpointMap, DM subdm)
2682d71ae5a4SJacob Faibussowitsch {
2683766ab985SMatthew G. Knepley PetscInt *pStart, *pEnd;
2684766ab985SMatthew G. Knepley PetscInt dim, cMax, cEnd, c, d;
2685766ab985SMatthew G. Knepley
2686812bfc34SJed Brown PetscFunctionBegin;
26879566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim));
26889566063dSJacob Faibussowitsch PetscCall(DMPlexGetTensorPrismBounds_Internal(dm, dim, &cMax, &cEnd));
26893ba16761SJacob Faibussowitsch if (cMax < 0) PetscFunctionReturn(PETSC_SUCCESS);
26909566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(dim + 1, &pStart, dim + 1, &pEnd));
26919566063dSJacob Faibussowitsch for (d = 0; d <= dim; ++d) PetscCall(DMPlexGetDepthStratum(dm, d, &pStart[d], &pEnd[d]));
2692766ab985SMatthew G. Knepley for (c = cMax; c < cEnd; ++c) {
2693766ab985SMatthew G. Knepley const PetscInt *cone;
2694766ab985SMatthew G. Knepley PetscInt *closure = NULL;
2695b3154360SMatthew G. Knepley PetscInt fconeSize, coneSize, closureSize, cl, val;
2696766ab985SMatthew G. Knepley
269727c04023SMatthew G. Knepley if (label) {
26989566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, c, &val));
269927c04023SMatthew G. Knepley if (val != value) continue;
270027c04023SMatthew G. Knepley }
27019566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, c, &coneSize));
27029566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, c, &cone));
27039566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, cone[0], &fconeSize));
27041dca8a05SBarry Smith PetscCheck(coneSize == (fconeSize ? fconeSize : 1) + 2, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Cohesive cells should separate two cells");
2705b3154360SMatthew G. Knepley /* Negative face */
27069566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(dm, cone[0], PETSC_TRUE, &closureSize, &closure));
2707766ab985SMatthew G. Knepley for (cl = 0; cl < closureSize * 2; cl += 2) {
2708766ab985SMatthew G. Knepley const PetscInt point = closure[cl];
2709766ab985SMatthew G. Knepley
2710766ab985SMatthew G. Knepley for (d = 0; d <= dim; ++d) {
2711b6555650SPierre Jolivet if (point >= pStart[d] && point < pEnd[d]) {
27129566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(subpointMap, point, d));
2713766ab985SMatthew G. Knepley break;
2714766ab985SMatthew G. Knepley }
2715766ab985SMatthew G. Knepley }
2716766ab985SMatthew G. Knepley }
27179566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dm, cone[0], PETSC_TRUE, &closureSize, &closure));
2718766ab985SMatthew G. Knepley /* Cells -- positive face is not included */
2719766ab985SMatthew G. Knepley for (cl = 0; cl < 1; ++cl) {
2720766ab985SMatthew G. Knepley const PetscInt *support;
2721766ab985SMatthew G. Knepley PetscInt supportSize, s;
2722766ab985SMatthew G. Knepley
27239566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dm, cone[cl], &supportSize));
272408401ef6SPierre Jolivet /* PetscCheck(supportSize == 2,PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Cohesive faces should separate two cells"); */
27259566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(dm, cone[cl], &support));
272648a46eb9SPierre Jolivet for (s = 0; s < supportSize; ++s) PetscCall(DMLabelSetValue(subpointMap, support[s], dim));
2727766ab985SMatthew G. Knepley }
2728766ab985SMatthew G. Knepley }
27299566063dSJacob Faibussowitsch PetscCall(PetscFree2(pStart, pEnd));
27303ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS);
2731766ab985SMatthew G. Knepley }
2732766ab985SMatthew G. Knepley
DMPlexGetFaceOrientation(DM dm,PetscInt cell,PetscInt numCorners,PetscInt indices[],PetscInt oppositeVertex,PetscInt origVertices[],PetscInt faceVertices[],PetscBool * posOriented)2733d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexGetFaceOrientation(DM dm, PetscInt cell, PetscInt numCorners, PetscInt indices[], PetscInt oppositeVertex, PetscInt origVertices[], PetscInt faceVertices[], PetscBool *posOriented)
2734d71ae5a4SJacob Faibussowitsch {
273582f516ccSBarry Smith MPI_Comm comm;
2736e6ccafaeSMatthew G Knepley PetscBool posOrient = PETSC_FALSE;
2737e6ccafaeSMatthew G Knepley const PetscInt debug = 0;
2738e6ccafaeSMatthew G Knepley PetscInt cellDim, faceSize, f;
2739e6ccafaeSMatthew G Knepley
274082f516ccSBarry Smith PetscFunctionBegin;
27419566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)dm, &comm));
27429566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &cellDim));
274363a3b9bcSJacob Faibussowitsch if (debug) PetscCall(PetscPrintf(comm, "cellDim: %" PetscInt_FMT " numCorners: %" PetscInt_FMT "\n", cellDim, numCorners));
2744e6ccafaeSMatthew G Knepley
2745ddeab2a6SMatthew G. Knepley if (cellDim == 1 && numCorners == 2) {
2746ddeab2a6SMatthew G. Knepley /* Triangle */
2747e6ccafaeSMatthew G Knepley faceSize = numCorners - 1;
2748e6ccafaeSMatthew G Knepley posOrient = !(oppositeVertex % 2) ? PETSC_TRUE : PETSC_FALSE;
2749ddeab2a6SMatthew G. Knepley } else if (cellDim == 2 && numCorners == 3) {
2750ddeab2a6SMatthew G. Knepley /* Triangle */
2751ddeab2a6SMatthew G. Knepley faceSize = numCorners - 1;
2752ddeab2a6SMatthew G. Knepley posOrient = !(oppositeVertex % 2) ? PETSC_TRUE : PETSC_FALSE;
2753ddeab2a6SMatthew G. Knepley } else if (cellDim == 3 && numCorners == 4) {
2754ddeab2a6SMatthew G. Knepley /* Tetrahedron */
2755ddeab2a6SMatthew G. Knepley faceSize = numCorners - 1;
2756ddeab2a6SMatthew G. Knepley posOrient = (oppositeVertex % 2) ? PETSC_TRUE : PETSC_FALSE;
2757e6ccafaeSMatthew G Knepley } else if (cellDim == 1 && numCorners == 3) {
2758e6ccafaeSMatthew G Knepley /* Quadratic line */
2759e6ccafaeSMatthew G Knepley faceSize = 1;
2760e6ccafaeSMatthew G Knepley posOrient = PETSC_TRUE;
2761e6ccafaeSMatthew G Knepley } else if (cellDim == 2 && numCorners == 4) {
2762e6ccafaeSMatthew G Knepley /* Quads */
2763e6ccafaeSMatthew G Knepley faceSize = 2;
2764b6555650SPierre Jolivet if (indices[1] > indices[0] && indices[1] - indices[0] == 1) {
2765e6ccafaeSMatthew G Knepley posOrient = PETSC_TRUE;
2766b6555650SPierre Jolivet } else if (indices[0] == 3 && indices[1] == 0) {
2767e6ccafaeSMatthew G Knepley posOrient = PETSC_TRUE;
2768e6ccafaeSMatthew G Knepley } else {
2769966bd95aSPierre Jolivet PetscCheck((indices[0] > indices[1] && indices[0] - indices[1] == 1) || (indices[0] == 0 && indices[1] == 3), comm, PETSC_ERR_ARG_WRONG, "Invalid quad crossedge");
2770e6ccafaeSMatthew G Knepley posOrient = PETSC_FALSE;
2771e6ccafaeSMatthew G Knepley }
2772e6ccafaeSMatthew G Knepley } else if (cellDim == 2 && numCorners == 6) {
2773e6ccafaeSMatthew G Knepley /* Quadratic triangle (I hate this) */
2774e6ccafaeSMatthew G Knepley /* Edges are determined by the first 2 vertices (corners of edges) */
2775e6ccafaeSMatthew G Knepley const PetscInt faceSizeTri = 3;
2776e6ccafaeSMatthew G Knepley PetscInt sortedIndices[3], i, iFace;
2777e6ccafaeSMatthew G Knepley PetscBool found = PETSC_FALSE;
2778e6ccafaeSMatthew G Knepley PetscInt faceVerticesTriSorted[9] = {
2779e6ccafaeSMatthew G Knepley 0, 3, 4, /* bottom */
2780e6ccafaeSMatthew G Knepley 1, 4, 5, /* right */
2781e6ccafaeSMatthew G Knepley 2, 3, 5, /* left */
2782e6ccafaeSMatthew G Knepley };
2783e6ccafaeSMatthew G Knepley PetscInt faceVerticesTri[9] = {
2784e6ccafaeSMatthew G Knepley 0, 3, 4, /* bottom */
2785e6ccafaeSMatthew G Knepley 1, 4, 5, /* right */
2786e6ccafaeSMatthew G Knepley 2, 5, 3, /* left */
2787e6ccafaeSMatthew G Knepley };
2788e6ccafaeSMatthew G Knepley
2789e6ccafaeSMatthew G Knepley for (i = 0; i < faceSizeTri; ++i) sortedIndices[i] = indices[i];
27909566063dSJacob Faibussowitsch PetscCall(PetscSortInt(faceSizeTri, sortedIndices));
2791e6ccafaeSMatthew G Knepley for (iFace = 0; iFace < 3; ++iFace) {
2792e6ccafaeSMatthew G Knepley const PetscInt ii = iFace * faceSizeTri;
2793e6ccafaeSMatthew G Knepley PetscInt fVertex, cVertex;
2794e6ccafaeSMatthew G Knepley
2795b6555650SPierre Jolivet if (sortedIndices[0] == faceVerticesTriSorted[ii + 0] && sortedIndices[1] == faceVerticesTriSorted[ii + 1]) {
2796e6ccafaeSMatthew G Knepley for (fVertex = 0; fVertex < faceSizeTri; ++fVertex) {
2797e6ccafaeSMatthew G Knepley for (cVertex = 0; cVertex < faceSizeTri; ++cVertex) {
2798e6ccafaeSMatthew G Knepley if (indices[cVertex] == faceVerticesTri[ii + fVertex]) {
2799e6ccafaeSMatthew G Knepley faceVertices[fVertex] = origVertices[cVertex];
2800e6ccafaeSMatthew G Knepley break;
2801e6ccafaeSMatthew G Knepley }
2802e6ccafaeSMatthew G Knepley }
2803e6ccafaeSMatthew G Knepley }
2804e6ccafaeSMatthew G Knepley found = PETSC_TRUE;
2805e6ccafaeSMatthew G Knepley break;
2806e6ccafaeSMatthew G Knepley }
2807e6ccafaeSMatthew G Knepley }
280828b400f6SJacob Faibussowitsch PetscCheck(found, comm, PETSC_ERR_ARG_WRONG, "Invalid tri crossface");
2809e6ccafaeSMatthew G Knepley if (posOriented) *posOriented = PETSC_TRUE;
28103ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS);
2811e6ccafaeSMatthew G Knepley } else if (cellDim == 2 && numCorners == 9) {
2812e6ccafaeSMatthew G Knepley /* Quadratic quad (I hate this) */
2813e6ccafaeSMatthew G Knepley /* Edges are determined by the first 2 vertices (corners of edges) */
2814e6ccafaeSMatthew G Knepley const PetscInt faceSizeQuad = 3;
2815e6ccafaeSMatthew G Knepley PetscInt sortedIndices[3], i, iFace;
2816e6ccafaeSMatthew G Knepley PetscBool found = PETSC_FALSE;
2817e6ccafaeSMatthew G Knepley PetscInt faceVerticesQuadSorted[12] = {
2818e6ccafaeSMatthew G Knepley 0, 1, 4, /* bottom */
2819e6ccafaeSMatthew G Knepley 1, 2, 5, /* right */
2820e6ccafaeSMatthew G Knepley 2, 3, 6, /* top */
2821e6ccafaeSMatthew G Knepley 0, 3, 7, /* left */
2822e6ccafaeSMatthew G Knepley };
2823e6ccafaeSMatthew G Knepley PetscInt faceVerticesQuad[12] = {
2824e6ccafaeSMatthew G Knepley 0, 1, 4, /* bottom */
2825e6ccafaeSMatthew G Knepley 1, 2, 5, /* right */
2826e6ccafaeSMatthew G Knepley 2, 3, 6, /* top */
2827e6ccafaeSMatthew G Knepley 3, 0, 7, /* left */
2828e6ccafaeSMatthew G Knepley };
2829e6ccafaeSMatthew G Knepley
2830e6ccafaeSMatthew G Knepley for (i = 0; i < faceSizeQuad; ++i) sortedIndices[i] = indices[i];
28319566063dSJacob Faibussowitsch PetscCall(PetscSortInt(faceSizeQuad, sortedIndices));
2832e6ccafaeSMatthew G Knepley for (iFace = 0; iFace < 4; ++iFace) {
2833e6ccafaeSMatthew G Knepley const PetscInt ii = iFace * faceSizeQuad;
2834e6ccafaeSMatthew G Knepley PetscInt fVertex, cVertex;
2835e6ccafaeSMatthew G Knepley
2836b6555650SPierre Jolivet if (sortedIndices[0] == faceVerticesQuadSorted[ii + 0] && sortedIndices[1] == faceVerticesQuadSorted[ii + 1]) {
2837e6ccafaeSMatthew G Knepley for (fVertex = 0; fVertex < faceSizeQuad; ++fVertex) {
2838e6ccafaeSMatthew G Knepley for (cVertex = 0; cVertex < faceSizeQuad; ++cVertex) {
2839e6ccafaeSMatthew G Knepley if (indices[cVertex] == faceVerticesQuad[ii + fVertex]) {
2840e6ccafaeSMatthew G Knepley faceVertices[fVertex] = origVertices[cVertex];
2841e6ccafaeSMatthew G Knepley break;
2842e6ccafaeSMatthew G Knepley }
2843e6ccafaeSMatthew G Knepley }
2844e6ccafaeSMatthew G Knepley }
2845e6ccafaeSMatthew G Knepley found = PETSC_TRUE;
2846e6ccafaeSMatthew G Knepley break;
2847e6ccafaeSMatthew G Knepley }
2848e6ccafaeSMatthew G Knepley }
284928b400f6SJacob Faibussowitsch PetscCheck(found, comm, PETSC_ERR_ARG_WRONG, "Invalid quad crossface");
2850e6ccafaeSMatthew G Knepley if (posOriented) *posOriented = PETSC_TRUE;
28513ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS);
2852e6ccafaeSMatthew G Knepley } else if (cellDim == 3 && numCorners == 8) {
2853e6ccafaeSMatthew G Knepley /* Hexes
2854e6ccafaeSMatthew G Knepley A hex is two oriented quads with the normal of the first
2855e6ccafaeSMatthew G Knepley pointing up at the second.
2856e6ccafaeSMatthew G Knepley
2857e6ccafaeSMatthew G Knepley 7---6
2858e6ccafaeSMatthew G Knepley /| /|
2859e6ccafaeSMatthew G Knepley 4---5 |
2860ddeab2a6SMatthew G. Knepley | 1-|-2
2861e6ccafaeSMatthew G Knepley |/ |/
2862ddeab2a6SMatthew G. Knepley 0---3
2863e6ccafaeSMatthew G Knepley
2864e6ccafaeSMatthew G Knepley Faces are determined by the first 4 vertices (corners of faces) */
2865e6ccafaeSMatthew G Knepley const PetscInt faceSizeHex = 4;
2866e6ccafaeSMatthew G Knepley PetscInt sortedIndices[4], i, iFace;
2867e6ccafaeSMatthew G Knepley PetscBool found = PETSC_FALSE;
2868e6ccafaeSMatthew G Knepley PetscInt faceVerticesHexSorted[24] = {
2869e6ccafaeSMatthew G Knepley 0, 1, 2, 3, /* bottom */
2870e6ccafaeSMatthew G Knepley 4, 5, 6, 7, /* top */
2871ddeab2a6SMatthew G. Knepley 0, 3, 4, 5, /* front */
2872ddeab2a6SMatthew G. Knepley 2, 3, 5, 6, /* right */
2873ddeab2a6SMatthew G. Knepley 1, 2, 6, 7, /* back */
2874ddeab2a6SMatthew G. Knepley 0, 1, 4, 7, /* left */
2875e6ccafaeSMatthew G Knepley };
2876e6ccafaeSMatthew G Knepley PetscInt faceVerticesHex[24] = {
2877ddeab2a6SMatthew G. Knepley 1, 2, 3, 0, /* bottom */
2878e6ccafaeSMatthew G Knepley 4, 5, 6, 7, /* top */
2879ddeab2a6SMatthew G. Knepley 0, 3, 5, 4, /* front */
2880ddeab2a6SMatthew G. Knepley 3, 2, 6, 5, /* right */
2881ddeab2a6SMatthew G. Knepley 2, 1, 7, 6, /* back */
2882ddeab2a6SMatthew G. Knepley 1, 0, 4, 7, /* left */
2883e6ccafaeSMatthew G Knepley };
2884e6ccafaeSMatthew G Knepley
2885e6ccafaeSMatthew G Knepley for (i = 0; i < faceSizeHex; ++i) sortedIndices[i] = indices[i];
28869566063dSJacob Faibussowitsch PetscCall(PetscSortInt(faceSizeHex, sortedIndices));
2887e6ccafaeSMatthew G Knepley for (iFace = 0; iFace < 6; ++iFace) {
2888e6ccafaeSMatthew G Knepley const PetscInt ii = iFace * faceSizeHex;
2889e6ccafaeSMatthew G Knepley PetscInt fVertex, cVertex;
2890e6ccafaeSMatthew G Knepley
2891b6555650SPierre Jolivet if (sortedIndices[0] == faceVerticesHexSorted[ii + 0] && sortedIndices[1] == faceVerticesHexSorted[ii + 1] && sortedIndices[2] == faceVerticesHexSorted[ii + 2] && sortedIndices[3] == faceVerticesHexSorted[ii + 3]) {
2892e6ccafaeSMatthew G Knepley for (fVertex = 0; fVertex < faceSizeHex; ++fVertex) {
2893e6ccafaeSMatthew G Knepley for (cVertex = 0; cVertex < faceSizeHex; ++cVertex) {
2894e6ccafaeSMatthew G Knepley if (indices[cVertex] == faceVerticesHex[ii + fVertex]) {
2895e6ccafaeSMatthew G Knepley faceVertices[fVertex] = origVertices[cVertex];
2896e6ccafaeSMatthew G Knepley break;
2897e6ccafaeSMatthew G Knepley }
2898e6ccafaeSMatthew G Knepley }
2899e6ccafaeSMatthew G Knepley }
2900e6ccafaeSMatthew G Knepley found = PETSC_TRUE;
2901e6ccafaeSMatthew G Knepley break;
2902e6ccafaeSMatthew G Knepley }
2903e6ccafaeSMatthew G Knepley }
290428b400f6SJacob Faibussowitsch PetscCheck(found, comm, PETSC_ERR_ARG_WRONG, "Invalid hex crossface");
2905e6ccafaeSMatthew G Knepley if (posOriented) *posOriented = PETSC_TRUE;
29063ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS);
2907e6ccafaeSMatthew G Knepley } else if (cellDim == 3 && numCorners == 10) {
2908e6ccafaeSMatthew G Knepley /* Quadratic tet */
2909e6ccafaeSMatthew G Knepley /* Faces are determined by the first 3 vertices (corners of faces) */
2910e6ccafaeSMatthew G Knepley const PetscInt faceSizeTet = 6;
2911e6ccafaeSMatthew G Knepley PetscInt sortedIndices[6], i, iFace;
2912e6ccafaeSMatthew G Knepley PetscBool found = PETSC_FALSE;
2913e6ccafaeSMatthew G Knepley PetscInt faceVerticesTetSorted[24] = {
2914e6ccafaeSMatthew G Knepley 0, 1, 2, 6, 7, 8, /* bottom */
2915e6ccafaeSMatthew G Knepley 0, 3, 4, 6, 7, 9, /* front */
2916e6ccafaeSMatthew G Knepley 1, 4, 5, 7, 8, 9, /* right */
2917e6ccafaeSMatthew G Knepley 2, 3, 5, 6, 8, 9, /* left */
2918e6ccafaeSMatthew G Knepley };
2919e6ccafaeSMatthew G Knepley PetscInt faceVerticesTet[24] = {
2920e6ccafaeSMatthew G Knepley 0, 1, 2, 6, 7, 8, /* bottom */
2921e6ccafaeSMatthew G Knepley 0, 4, 3, 6, 7, 9, /* front */
2922e6ccafaeSMatthew G Knepley 1, 5, 4, 7, 8, 9, /* right */
2923e6ccafaeSMatthew G Knepley 2, 3, 5, 8, 6, 9, /* left */
2924e6ccafaeSMatthew G Knepley };
2925e6ccafaeSMatthew G Knepley
2926e6ccafaeSMatthew G Knepley for (i = 0; i < faceSizeTet; ++i) sortedIndices[i] = indices[i];
29279566063dSJacob Faibussowitsch PetscCall(PetscSortInt(faceSizeTet, sortedIndices));
2928e6ccafaeSMatthew G Knepley for (iFace = 0; iFace < 4; ++iFace) {
2929e6ccafaeSMatthew G Knepley const PetscInt ii = iFace * faceSizeTet;
2930e6ccafaeSMatthew G Knepley PetscInt fVertex, cVertex;
2931e6ccafaeSMatthew G Knepley
2932b6555650SPierre Jolivet if (sortedIndices[0] == faceVerticesTetSorted[ii + 0] && sortedIndices[1] == faceVerticesTetSorted[ii + 1] && sortedIndices[2] == faceVerticesTetSorted[ii + 2] && sortedIndices[3] == faceVerticesTetSorted[ii + 3]) {
2933e6ccafaeSMatthew G Knepley for (fVertex = 0; fVertex < faceSizeTet; ++fVertex) {
2934e6ccafaeSMatthew G Knepley for (cVertex = 0; cVertex < faceSizeTet; ++cVertex) {
2935e6ccafaeSMatthew G Knepley if (indices[cVertex] == faceVerticesTet[ii + fVertex]) {
2936e6ccafaeSMatthew G Knepley faceVertices[fVertex] = origVertices[cVertex];
2937e6ccafaeSMatthew G Knepley break;
2938e6ccafaeSMatthew G Knepley }
2939e6ccafaeSMatthew G Knepley }
2940e6ccafaeSMatthew G Knepley }
2941e6ccafaeSMatthew G Knepley found = PETSC_TRUE;
2942e6ccafaeSMatthew G Knepley break;
2943e6ccafaeSMatthew G Knepley }
2944e6ccafaeSMatthew G Knepley }
294528b400f6SJacob Faibussowitsch PetscCheck(found, comm, PETSC_ERR_ARG_WRONG, "Invalid tet crossface");
2946e6ccafaeSMatthew G Knepley if (posOriented) *posOriented = PETSC_TRUE;
29473ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS);
2948e6ccafaeSMatthew G Knepley } else if (cellDim == 3 && numCorners == 27) {
2949e6ccafaeSMatthew G Knepley /* Quadratic hexes (I hate this)
2950e6ccafaeSMatthew G Knepley A hex is two oriented quads with the normal of the first
2951e6ccafaeSMatthew G Knepley pointing up at the second.
2952e6ccafaeSMatthew G Knepley
2953e6ccafaeSMatthew G Knepley 7---6
2954e6ccafaeSMatthew G Knepley /| /|
2955e6ccafaeSMatthew G Knepley 4---5 |
2956e6ccafaeSMatthew G Knepley | 3-|-2
2957e6ccafaeSMatthew G Knepley |/ |/
2958e6ccafaeSMatthew G Knepley 0---1
2959e6ccafaeSMatthew G Knepley
2960e6ccafaeSMatthew G Knepley Faces are determined by the first 4 vertices (corners of faces) */
2961e6ccafaeSMatthew G Knepley const PetscInt faceSizeQuadHex = 9;
2962e6ccafaeSMatthew G Knepley PetscInt sortedIndices[9], i, iFace;
2963e6ccafaeSMatthew G Knepley PetscBool found = PETSC_FALSE;
2964e6ccafaeSMatthew G Knepley PetscInt faceVerticesQuadHexSorted[54] = {
2965e6ccafaeSMatthew G Knepley 0, 1, 2, 3, 8, 9, 10, 11, 24, /* bottom */
2966e6ccafaeSMatthew G Knepley 4, 5, 6, 7, 12, 13, 14, 15, 25, /* top */
2967e6ccafaeSMatthew G Knepley 0, 1, 4, 5, 8, 12, 16, 17, 22, /* front */
2968e6ccafaeSMatthew G Knepley 1, 2, 5, 6, 9, 13, 17, 18, 21, /* right */
2969e6ccafaeSMatthew G Knepley 2, 3, 6, 7, 10, 14, 18, 19, 23, /* back */
2970e6ccafaeSMatthew G Knepley 0, 3, 4, 7, 11, 15, 16, 19, 20, /* left */
2971e6ccafaeSMatthew G Knepley };
2972e6ccafaeSMatthew G Knepley PetscInt faceVerticesQuadHex[54] = {
2973e6ccafaeSMatthew G Knepley 3, 2, 1, 0, 10, 9, 8, 11, 24, /* bottom */
2974e6ccafaeSMatthew G Knepley 4, 5, 6, 7, 12, 13, 14, 15, 25, /* top */
2975e6ccafaeSMatthew G Knepley 0, 1, 5, 4, 8, 17, 12, 16, 22, /* front */
2976e6ccafaeSMatthew G Knepley 1, 2, 6, 5, 9, 18, 13, 17, 21, /* right */
2977e6ccafaeSMatthew G Knepley 2, 3, 7, 6, 10, 19, 14, 18, 23, /* back */
2978e6ccafaeSMatthew G Knepley 3, 0, 4, 7, 11, 16, 15, 19, 20 /* left */
2979e6ccafaeSMatthew G Knepley };
2980e6ccafaeSMatthew G Knepley
2981e6ccafaeSMatthew G Knepley for (i = 0; i < faceSizeQuadHex; ++i) sortedIndices[i] = indices[i];
29829566063dSJacob Faibussowitsch PetscCall(PetscSortInt(faceSizeQuadHex, sortedIndices));
2983e6ccafaeSMatthew G Knepley for (iFace = 0; iFace < 6; ++iFace) {
2984e6ccafaeSMatthew G Knepley const PetscInt ii = iFace * faceSizeQuadHex;
2985e6ccafaeSMatthew G Knepley PetscInt fVertex, cVertex;
2986e6ccafaeSMatthew G Knepley
2987b6555650SPierre Jolivet if (sortedIndices[0] == faceVerticesQuadHexSorted[ii + 0] && sortedIndices[1] == faceVerticesQuadHexSorted[ii + 1] && sortedIndices[2] == faceVerticesQuadHexSorted[ii + 2] && sortedIndices[3] == faceVerticesQuadHexSorted[ii + 3]) {
2988e6ccafaeSMatthew G Knepley for (fVertex = 0; fVertex < faceSizeQuadHex; ++fVertex) {
2989e6ccafaeSMatthew G Knepley for (cVertex = 0; cVertex < faceSizeQuadHex; ++cVertex) {
2990e6ccafaeSMatthew G Knepley if (indices[cVertex] == faceVerticesQuadHex[ii + fVertex]) {
2991e6ccafaeSMatthew G Knepley faceVertices[fVertex] = origVertices[cVertex];
2992e6ccafaeSMatthew G Knepley break;
2993e6ccafaeSMatthew G Knepley }
2994e6ccafaeSMatthew G Knepley }
2995e6ccafaeSMatthew G Knepley }
2996e6ccafaeSMatthew G Knepley found = PETSC_TRUE;
2997e6ccafaeSMatthew G Knepley break;
2998e6ccafaeSMatthew G Knepley }
2999e6ccafaeSMatthew G Knepley }
300028b400f6SJacob Faibussowitsch PetscCheck(found, comm, PETSC_ERR_ARG_WRONG, "Invalid hex crossface");
3001e6ccafaeSMatthew G Knepley if (posOriented) *posOriented = PETSC_TRUE;
30023ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS);
3003e6ccafaeSMatthew G Knepley } else SETERRQ(comm, PETSC_ERR_ARG_WRONG, "Unknown cell type for faceOrientation().");
3004e6ccafaeSMatthew G Knepley if (!posOrient) {
30059566063dSJacob Faibussowitsch if (debug) PetscCall(PetscPrintf(comm, " Reversing initial face orientation\n"));
3006e6ccafaeSMatthew G Knepley for (f = 0; f < faceSize; ++f) faceVertices[f] = origVertices[faceSize - 1 - f];
3007e6ccafaeSMatthew G Knepley } else {
30089566063dSJacob Faibussowitsch if (debug) PetscCall(PetscPrintf(comm, " Keeping initial face orientation\n"));
3009e6ccafaeSMatthew G Knepley for (f = 0; f < faceSize; ++f) faceVertices[f] = origVertices[f];
3010e6ccafaeSMatthew G Knepley }
3011e6ccafaeSMatthew G Knepley if (posOriented) *posOriented = posOrient;
30123ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS);
3013e6ccafaeSMatthew G Knepley }
3014e6ccafaeSMatthew G Knepley
3015c08575a3SMatthew G. Knepley /*@
3016c08575a3SMatthew G. Knepley DMPlexGetOrientedFace - Given a cell and a face, as a set of vertices, return the oriented face, as a set of vertices,
3017c08575a3SMatthew G. Knepley in faceVertices. The orientation is such that the face normal points out of the cell
3018c08575a3SMatthew G. Knepley
301920f4b53cSBarry Smith Not Collective
3020c08575a3SMatthew G. Knepley
3021c08575a3SMatthew G. Knepley Input Parameters:
3022c08575a3SMatthew G. Knepley + dm - The original mesh
3023c08575a3SMatthew G. Knepley . cell - The cell mesh point
3024c08575a3SMatthew G. Knepley . faceSize - The number of vertices on the face
3025c08575a3SMatthew G. Knepley . face - The face vertices
3026c08575a3SMatthew G. Knepley . numCorners - The number of vertices on the cell
3027c08575a3SMatthew G. Knepley . indices - Local numbering of face vertices in cell cone
3028c08575a3SMatthew G. Knepley - origVertices - Original face vertices
3029c08575a3SMatthew G. Knepley
3030d8d19677SJose E. Roman Output Parameters:
3031c08575a3SMatthew G. Knepley + faceVertices - The face vertices properly oriented
303220f4b53cSBarry Smith - posOriented - `PETSC_TRUE` if the face was oriented with outward normal
3033c08575a3SMatthew G. Knepley
3034c08575a3SMatthew G. Knepley Level: developer
3035c08575a3SMatthew G. Knepley
30361cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexGetCone()`
3037c08575a3SMatthew G. Knepley @*/
DMPlexGetOrientedFace(DM dm,PetscInt cell,PetscInt faceSize,const PetscInt face[],PetscInt numCorners,PetscInt indices[],PetscInt origVertices[],PetscInt faceVertices[],PetscBool * posOriented)3038d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexGetOrientedFace(DM dm, PetscInt cell, PetscInt faceSize, const PetscInt face[], PetscInt numCorners, PetscInt indices[], PetscInt origVertices[], PetscInt faceVertices[], PetscBool *posOriented)
3039d71ae5a4SJacob Faibussowitsch {
30400298fd71SBarry Smith const PetscInt *cone = NULL;
3041e6ccafaeSMatthew G Knepley PetscInt coneSize, v, f, v2;
3042e6ccafaeSMatthew G Knepley PetscInt oppositeVertex = -1;
3043e6ccafaeSMatthew G Knepley
3044e6ccafaeSMatthew G Knepley PetscFunctionBegin;
30459566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, cell, &coneSize));
30469566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, cell, &cone));
3047e6ccafaeSMatthew G Knepley for (v = 0, v2 = 0; v < coneSize; ++v) {
3048e6ccafaeSMatthew G Knepley PetscBool found = PETSC_FALSE;
3049e6ccafaeSMatthew G Knepley
3050e6ccafaeSMatthew G Knepley for (f = 0; f < faceSize; ++f) {
3051e6ccafaeSMatthew G Knepley if (face[f] == cone[v]) {
30529371c9d4SSatish Balay found = PETSC_TRUE;
30539371c9d4SSatish Balay break;
3054e6ccafaeSMatthew G Knepley }
3055e6ccafaeSMatthew G Knepley }
3056e6ccafaeSMatthew G Knepley if (found) {
3057e6ccafaeSMatthew G Knepley indices[v2] = v;
3058e6ccafaeSMatthew G Knepley origVertices[v2] = cone[v];
3059e6ccafaeSMatthew G Knepley ++v2;
3060e6ccafaeSMatthew G Knepley } else {
3061e6ccafaeSMatthew G Knepley oppositeVertex = v;
3062e6ccafaeSMatthew G Knepley }
3063e6ccafaeSMatthew G Knepley }
30649566063dSJacob Faibussowitsch PetscCall(DMPlexGetFaceOrientation(dm, cell, numCorners, indices, oppositeVertex, origVertices, faceVertices, posOriented));
30653ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS);
3066e6ccafaeSMatthew G Knepley }
3067e6ccafaeSMatthew G Knepley
3068e6ccafaeSMatthew G Knepley /*
3069cd0c2139SMatthew G Knepley DMPlexInsertFace_Internal - Puts a face into the mesh
3070e6ccafaeSMatthew G Knepley
307120f4b53cSBarry Smith Not Collective
3072e6ccafaeSMatthew G Knepley
3073e6ccafaeSMatthew G Knepley Input Parameters:
307420f4b53cSBarry Smith + dm - The `DMPLEX`
3075e6ccafaeSMatthew G Knepley . numFaceVertex - The number of vertices in the face
307620f4b53cSBarry Smith . faceVertices - The vertices in the face for `dm`
3077e6ccafaeSMatthew G Knepley . subfaceVertices - The vertices in the face for subdm
307820f4b53cSBarry Smith . numCorners - The number of vertices in the `cell`
307920f4b53cSBarry Smith . cell - A cell in `dm` containing the face
3080e6ccafaeSMatthew G Knepley . subcell - A cell in subdm containing the face
3081e6ccafaeSMatthew G Knepley . firstFace - First face in the mesh
3082e6ccafaeSMatthew G Knepley - newFacePoint - Next face in the mesh
3083e6ccafaeSMatthew G Knepley
30842fe279fdSBarry Smith Output Parameter:
3085e6ccafaeSMatthew G Knepley . newFacePoint - Contains next face point number on input, updated on output
3086e6ccafaeSMatthew G Knepley
3087e6ccafaeSMatthew G Knepley Level: developer
3088e6ccafaeSMatthew G Knepley */
DMPlexInsertFace_Internal(DM dm,DM subdm,PetscInt numFaceVertices,const PetscInt faceVertices[],const PetscInt subfaceVertices[],PetscInt numCorners,PetscInt cell,PetscInt subcell,PetscInt firstFace,PetscInt * newFacePoint)3089d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexInsertFace_Internal(DM dm, DM subdm, PetscInt numFaceVertices, const PetscInt faceVertices[], const PetscInt subfaceVertices[], PetscInt numCorners, PetscInt cell, PetscInt subcell, PetscInt firstFace, PetscInt *newFacePoint)
3090d71ae5a4SJacob Faibussowitsch {
309182f516ccSBarry Smith MPI_Comm comm;
3092e6ccafaeSMatthew G Knepley DM_Plex *submesh = (DM_Plex *)subdm->data;
3093e6ccafaeSMatthew G Knepley const PetscInt *faces;
3094e6ccafaeSMatthew G Knepley PetscInt numFaces, coneSize;
3095e6ccafaeSMatthew G Knepley
3096e6ccafaeSMatthew G Knepley PetscFunctionBegin;
30979566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)dm, &comm));
30989566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(subdm, subcell, &coneSize));
309963a3b9bcSJacob Faibussowitsch PetscCheck(coneSize == 1, comm, PETSC_ERR_ARG_OUTOFRANGE, "Cone size of cell %" PetscInt_FMT " is %" PetscInt_FMT " != 1", cell, coneSize);
3100e6ccafaeSMatthew G Knepley #if 0
3101e6ccafaeSMatthew G Knepley /* Cannot use this because support() has not been constructed yet */
31029566063dSJacob Faibussowitsch PetscCall(DMPlexGetJoin(subdm, numFaceVertices, subfaceVertices, &numFaces, &faces));
3103e6ccafaeSMatthew G Knepley #else
3104e6ccafaeSMatthew G Knepley {
3105e6ccafaeSMatthew G Knepley PetscInt f;
3106e6ccafaeSMatthew G Knepley
3107e6ccafaeSMatthew G Knepley numFaces = 0;
31089566063dSJacob Faibussowitsch PetscCall(DMGetWorkArray(subdm, 1, MPIU_INT, (void **)&faces));
3109e6ccafaeSMatthew G Knepley for (f = firstFace; f < *newFacePoint; ++f) {
3110e6ccafaeSMatthew G Knepley PetscInt dof, off, d;
3111e6ccafaeSMatthew G Knepley
31129566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(submesh->coneSection, f, &dof));
31139566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(submesh->coneSection, f, &off));
3114e6ccafaeSMatthew G Knepley /* Yes, I know this is quadratic, but I expect the sizes to be <5 */
3115e6ccafaeSMatthew G Knepley for (d = 0; d < dof; ++d) {
3116e6ccafaeSMatthew G Knepley const PetscInt p = submesh->cones[off + d];
3117e6ccafaeSMatthew G Knepley PetscInt v;
3118e6ccafaeSMatthew G Knepley
3119e6ccafaeSMatthew G Knepley for (v = 0; v < numFaceVertices; ++v) {
3120e6ccafaeSMatthew G Knepley if (subfaceVertices[v] == p) break;
3121e6ccafaeSMatthew G Knepley }
3122e6ccafaeSMatthew G Knepley if (v == numFaceVertices) break;
3123e6ccafaeSMatthew G Knepley }
3124e6ccafaeSMatthew G Knepley if (d == dof) {
3125e6ccafaeSMatthew G Knepley numFaces = 1;
3126e6ccafaeSMatthew G Knepley ((PetscInt *)faces)[0] = f;
3127e6ccafaeSMatthew G Knepley }
3128e6ccafaeSMatthew G Knepley }
3129e6ccafaeSMatthew G Knepley }
3130e6ccafaeSMatthew G Knepley #endif
313163a3b9bcSJacob Faibussowitsch PetscCheck(numFaces <= 1, comm, PETSC_ERR_ARG_WRONG, "Vertex set had %" PetscInt_FMT " faces, not one", numFaces);
3132f7d195e4SLawrence Mitchell if (numFaces == 1) {
3133e6ccafaeSMatthew G Knepley /* Add the other cell neighbor for this face */
31349566063dSJacob Faibussowitsch PetscCall(DMPlexSetCone(subdm, subcell, faces));
3135e6ccafaeSMatthew G Knepley } else {
3136e6ccafaeSMatthew G Knepley PetscInt *indices, *origVertices, *orientedVertices, *orientedSubVertices, v, ov;
3137e6ccafaeSMatthew G Knepley PetscBool posOriented;
3138e6ccafaeSMatthew G Knepley
31399566063dSJacob Faibussowitsch PetscCall(DMGetWorkArray(subdm, 4 * numFaceVertices * sizeof(PetscInt), MPIU_INT, &orientedVertices));
3140e6ccafaeSMatthew G Knepley origVertices = &orientedVertices[numFaceVertices];
3141e6ccafaeSMatthew G Knepley indices = &orientedVertices[numFaceVertices * 2];
3142e6ccafaeSMatthew G Knepley orientedSubVertices = &orientedVertices[numFaceVertices * 3];
31439566063dSJacob Faibussowitsch PetscCall(DMPlexGetOrientedFace(dm, cell, numFaceVertices, faceVertices, numCorners, indices, origVertices, orientedVertices, &posOriented));
3144e6ccafaeSMatthew G Knepley /* TODO: I know that routine should return a permutation, not the indices */
3145e6ccafaeSMatthew G Knepley for (v = 0; v < numFaceVertices; ++v) {
3146e6ccafaeSMatthew G Knepley const PetscInt vertex = faceVertices[v], subvertex = subfaceVertices[v];
3147e6ccafaeSMatthew G Knepley for (ov = 0; ov < numFaceVertices; ++ov) {
3148e6ccafaeSMatthew G Knepley if (orientedVertices[ov] == vertex) {
3149e6ccafaeSMatthew G Knepley orientedSubVertices[ov] = subvertex;
3150e6ccafaeSMatthew G Knepley break;
3151e6ccafaeSMatthew G Knepley }
3152e6ccafaeSMatthew G Knepley }
315363a3b9bcSJacob Faibussowitsch PetscCheck(ov != numFaceVertices, comm, PETSC_ERR_PLIB, "Could not find face vertex %" PetscInt_FMT " in orientated set", vertex);
3154e6ccafaeSMatthew G Knepley }
31559566063dSJacob Faibussowitsch PetscCall(DMPlexSetCone(subdm, *newFacePoint, orientedSubVertices));
31569566063dSJacob Faibussowitsch PetscCall(DMPlexSetCone(subdm, subcell, newFacePoint));
31579566063dSJacob Faibussowitsch PetscCall(DMRestoreWorkArray(subdm, 4 * numFaceVertices * sizeof(PetscInt), MPIU_INT, &orientedVertices));
3158e6ccafaeSMatthew G Knepley ++(*newFacePoint);
3159e6ccafaeSMatthew G Knepley }
3160ef07cca7SMatthew G. Knepley #if 0
31619566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreJoin(subdm, numFaceVertices, subfaceVertices, &numFaces, &faces));
3162ef07cca7SMatthew G. Knepley #else
31639566063dSJacob Faibussowitsch PetscCall(DMRestoreWorkArray(subdm, 1, MPIU_INT, (void **)&faces));
3164ef07cca7SMatthew G. Knepley #endif
31653ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS);
3166e6ccafaeSMatthew G Knepley }
3167e6ccafaeSMatthew G Knepley
DMPlexCreateSubmesh_Uninterpolated(DM dm,DMLabel vertexLabel,PetscInt value,DM subdm)3168d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexCreateSubmesh_Uninterpolated(DM dm, DMLabel vertexLabel, PetscInt value, DM subdm)
3169d71ae5a4SJacob Faibussowitsch {
317082f516ccSBarry Smith MPI_Comm comm;
317153156dfcSMatthew G. Knepley DMLabel subpointMap;
3172efa14ee0SMatthew G Knepley IS subvertexIS, subcellIS;
3173efa14ee0SMatthew G Knepley const PetscInt *subVertices, *subCells;
3174efa14ee0SMatthew G Knepley PetscInt numSubVertices, firstSubVertex, numSubCells;
3175fed694aaSMatthew G. Knepley PetscInt *subface, maxConeSize, numSubFaces = 0, firstSubFace, newFacePoint, nFV = 0;
3176efa14ee0SMatthew G Knepley PetscInt vStart, vEnd, c, f;
3177e6ccafaeSMatthew G Knepley
3178e6ccafaeSMatthew G Knepley PetscFunctionBegin;
31799566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)dm, &comm));
3180efa14ee0SMatthew G Knepley /* Create subpointMap which marks the submesh */
31819566063dSJacob Faibussowitsch PetscCall(DMLabelCreate(PETSC_COMM_SELF, "subpoint_map", &subpointMap));
31829566063dSJacob Faibussowitsch PetscCall(DMPlexSetSubpointMap(subdm, subpointMap));
31839566063dSJacob Faibussowitsch if (vertexLabel) PetscCall(DMPlexMarkSubmesh_Uninterpolated(dm, vertexLabel, value, subpointMap, &numSubFaces, &nFV, subdm));
3184efa14ee0SMatthew G Knepley /* Setup chart */
31859566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumSize(subpointMap, 0, &numSubVertices));
31869566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumSize(subpointMap, 2, &numSubCells));
31879566063dSJacob Faibussowitsch PetscCall(DMPlexSetChart(subdm, 0, numSubCells + numSubFaces + numSubVertices));
31889566063dSJacob Faibussowitsch PetscCall(DMPlexSetVTKCellHeight(subdm, 1));
3189e6ccafaeSMatthew G Knepley /* Set cone sizes */
3190e6ccafaeSMatthew G Knepley firstSubVertex = numSubCells;
3191efa14ee0SMatthew G Knepley firstSubFace = numSubCells + numSubVertices;
3192e6ccafaeSMatthew G Knepley newFacePoint = firstSubFace;
31939566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(subpointMap, 0, &subvertexIS));
31949566063dSJacob Faibussowitsch if (subvertexIS) PetscCall(ISGetIndices(subvertexIS, &subVertices));
31959566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(subpointMap, 2, &subcellIS));
31969566063dSJacob Faibussowitsch if (subcellIS) PetscCall(ISGetIndices(subcellIS, &subCells));
319748a46eb9SPierre Jolivet for (c = 0; c < numSubCells; ++c) PetscCall(DMPlexSetConeSize(subdm, c, 1));
319848a46eb9SPierre Jolivet for (f = firstSubFace; f < firstSubFace + numSubFaces; ++f) PetscCall(DMPlexSetConeSize(subdm, f, nFV));
31999566063dSJacob Faibussowitsch PetscCall(DMSetUp(subdm));
3200d24a712aSStefano Zampini PetscCall(DMLabelDestroy(&subpointMap));
3201e6ccafaeSMatthew G Knepley /* Create face cones */
32029566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthStratum(dm, 0, &vStart, &vEnd));
32039566063dSJacob Faibussowitsch PetscCall(DMPlexGetMaxSizes(dm, &maxConeSize, NULL));
32049566063dSJacob Faibussowitsch PetscCall(DMGetWorkArray(subdm, maxConeSize, MPIU_INT, (void **)&subface));
3205e6ccafaeSMatthew G Knepley for (c = 0; c < numSubCells; ++c) {
3206e6ccafaeSMatthew G Knepley const PetscInt cell = subCells[c];
3207efa14ee0SMatthew G Knepley const PetscInt subcell = c;
32080298fd71SBarry Smith PetscInt *closure = NULL;
3209efa14ee0SMatthew G Knepley PetscInt closureSize, cl, numCorners = 0, faceSize = 0;
3210e6ccafaeSMatthew G Knepley
32119566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(dm, cell, PETSC_TRUE, &closureSize, &closure));
3212efa14ee0SMatthew G Knepley for (cl = 0; cl < closureSize * 2; cl += 2) {
3213efa14ee0SMatthew G Knepley const PetscInt point = closure[cl];
3214e6ccafaeSMatthew G Knepley PetscInt subVertex;
3215e6ccafaeSMatthew G Knepley
3216b6555650SPierre Jolivet if (point >= vStart && point < vEnd) {
3217efa14ee0SMatthew G Knepley ++numCorners;
32189566063dSJacob Faibussowitsch PetscCall(PetscFindInt(point, numSubVertices, subVertices, &subVertex));
3219efa14ee0SMatthew G Knepley if (subVertex >= 0) {
3220efa14ee0SMatthew G Knepley closure[faceSize] = point;
322165560c7fSMatthew G Knepley subface[faceSize] = firstSubVertex + subVertex;
3222e6ccafaeSMatthew G Knepley ++faceSize;
3223e6ccafaeSMatthew G Knepley }
3224e6ccafaeSMatthew G Knepley }
3225e6ccafaeSMatthew G Knepley }
322663a3b9bcSJacob Faibussowitsch PetscCheck(faceSize <= nFV, comm, PETSC_ERR_ARG_WRONG, "Invalid submesh: Too many vertices %" PetscInt_FMT " of an element on the surface", faceSize);
322748a46eb9SPierre Jolivet if (faceSize == nFV) PetscCall(DMPlexInsertFace_Internal(dm, subdm, faceSize, closure, subface, numCorners, cell, subcell, firstSubFace, &newFacePoint));
32289566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dm, cell, PETSC_TRUE, &closureSize, &closure));
3229e6ccafaeSMatthew G Knepley }
32309566063dSJacob Faibussowitsch PetscCall(DMRestoreWorkArray(subdm, maxConeSize, MPIU_INT, (void **)&subface));
32319566063dSJacob Faibussowitsch PetscCall(DMPlexSymmetrize(subdm));
32329566063dSJacob Faibussowitsch PetscCall(DMPlexStratify(subdm));
3233e6ccafaeSMatthew G Knepley /* Build coordinates */
3234efa14ee0SMatthew G Knepley {
3235efa14ee0SMatthew G Knepley PetscSection coordSection, subCoordSection;
3236efa14ee0SMatthew G Knepley Vec coordinates, subCoordinates;
3237efa14ee0SMatthew G Knepley PetscScalar *coords, *subCoords;
3238285d324eSMatthew G. Knepley PetscInt numComp, coordSize, v;
323924640c55SToby Isaac const char *name;
3240efa14ee0SMatthew G Knepley
32419566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateSection(dm, &coordSection));
32429566063dSJacob Faibussowitsch PetscCall(DMGetCoordinatesLocal(dm, &coordinates));
32439566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateSection(subdm, &subCoordSection));
32449566063dSJacob Faibussowitsch PetscCall(PetscSectionSetNumFields(subCoordSection, 1));
32459566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldComponents(coordSection, 0, &numComp));
32469566063dSJacob Faibussowitsch PetscCall(PetscSectionSetFieldComponents(subCoordSection, 0, numComp));
32479566063dSJacob Faibussowitsch PetscCall(PetscSectionSetChart(subCoordSection, firstSubVertex, firstSubVertex + numSubVertices));
3248efa14ee0SMatthew G Knepley for (v = 0; v < numSubVertices; ++v) {
3249efa14ee0SMatthew G Knepley const PetscInt vertex = subVertices[v];
3250efa14ee0SMatthew G Knepley const PetscInt subvertex = firstSubVertex + v;
3251efa14ee0SMatthew G Knepley PetscInt dof;
3252efa14ee0SMatthew G Knepley
32539566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(coordSection, vertex, &dof));
32549566063dSJacob Faibussowitsch PetscCall(PetscSectionSetDof(subCoordSection, subvertex, dof));
32559566063dSJacob Faibussowitsch PetscCall(PetscSectionSetFieldDof(subCoordSection, subvertex, 0, dof));
3256e6ccafaeSMatthew G Knepley }
32579566063dSJacob Faibussowitsch PetscCall(PetscSectionSetUp(subCoordSection));
32589566063dSJacob Faibussowitsch PetscCall(PetscSectionGetStorageSize(subCoordSection, &coordSize));
32599566063dSJacob Faibussowitsch PetscCall(VecCreate(PETSC_COMM_SELF, &subCoordinates));
32609566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)coordinates, &name));
32619566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)subCoordinates, name));
32629566063dSJacob Faibussowitsch PetscCall(VecSetSizes(subCoordinates, coordSize, PETSC_DETERMINE));
32639566063dSJacob Faibussowitsch PetscCall(VecSetType(subCoordinates, VECSTANDARD));
3264830e53efSMatthew G. Knepley if (coordSize) {
32659566063dSJacob Faibussowitsch PetscCall(VecGetArray(coordinates, &coords));
32669566063dSJacob Faibussowitsch PetscCall(VecGetArray(subCoordinates, &subCoords));
3267efa14ee0SMatthew G Knepley for (v = 0; v < numSubVertices; ++v) {
3268efa14ee0SMatthew G Knepley const PetscInt vertex = subVertices[v];
3269efa14ee0SMatthew G Knepley const PetscInt subvertex = firstSubVertex + v;
3270efa14ee0SMatthew G Knepley PetscInt dof, off, sdof, soff, d;
3271e6ccafaeSMatthew G Knepley
32729566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(coordSection, vertex, &dof));
32739566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(coordSection, vertex, &off));
32749566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(subCoordSection, subvertex, &sdof));
32759566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(subCoordSection, subvertex, &soff));
327663a3b9bcSJacob Faibussowitsch PetscCheck(dof == sdof, comm, PETSC_ERR_PLIB, "Coordinate dimension %" PetscInt_FMT " on subvertex %" PetscInt_FMT ", vertex %" PetscInt_FMT " should be %" PetscInt_FMT, sdof, subvertex, vertex, dof);
3277e6ccafaeSMatthew G Knepley for (d = 0; d < dof; ++d) subCoords[soff + d] = coords[off + d];
3278e6ccafaeSMatthew G Knepley }
32799566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(coordinates, &coords));
32809566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(subCoordinates, &subCoords));
32813b399e24SMatthew G. Knepley }
32829566063dSJacob Faibussowitsch PetscCall(DMSetCoordinatesLocal(subdm, subCoordinates));
32839566063dSJacob Faibussowitsch PetscCall(VecDestroy(&subCoordinates));
3284e6ccafaeSMatthew G Knepley }
3285efa14ee0SMatthew G Knepley /* Cleanup */
32869566063dSJacob Faibussowitsch if (subvertexIS) PetscCall(ISRestoreIndices(subvertexIS, &subVertices));
32879566063dSJacob Faibussowitsch PetscCall(ISDestroy(&subvertexIS));
32889566063dSJacob Faibussowitsch if (subcellIS) PetscCall(ISRestoreIndices(subcellIS, &subCells));
32899566063dSJacob Faibussowitsch PetscCall(ISDestroy(&subcellIS));
32903ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS);
3291e6ccafaeSMatthew G Knepley }
3292e6ccafaeSMatthew G Knepley
3293d5b43468SJose E. Roman /* TODO: Fix this to properly propagate up error conditions it may find */
DMPlexFilterPoint_Internal(PetscInt point,PetscInt firstSubPoint,PetscInt numSubPoints,const PetscInt subPoints[])3294d71ae5a4SJacob Faibussowitsch static inline PetscInt DMPlexFilterPoint_Internal(PetscInt point, PetscInt firstSubPoint, PetscInt numSubPoints, const PetscInt subPoints[])
3295d71ae5a4SJacob Faibussowitsch {
32963982b651SMatthew G. Knepley PetscInt subPoint;
32973982b651SMatthew G. Knepley PetscErrorCode ierr;
32983982b651SMatthew G. Knepley
32999371c9d4SSatish Balay ierr = PetscFindInt(point, numSubPoints, subPoints, &subPoint);
33009371c9d4SSatish Balay if (ierr) return -1;
33013982b651SMatthew G. Knepley return subPoint < 0 ? subPoint : firstSubPoint + subPoint;
33023982b651SMatthew G. Knepley }
33033982b651SMatthew G. Knepley
3304d5b43468SJose E. Roman /* TODO: Fix this to properly propagate up error conditions it may find */
DMPlexFilterPointPerm_Internal(PetscInt point,PetscInt firstSubPoint,PetscInt numSubPoints,const PetscInt subPoints[],const PetscInt subIndices[])3305d71ae5a4SJacob Faibussowitsch static inline PetscInt DMPlexFilterPointPerm_Internal(PetscInt point, PetscInt firstSubPoint, PetscInt numSubPoints, const PetscInt subPoints[], const PetscInt subIndices[])
3306d71ae5a4SJacob Faibussowitsch {
3307dd05d810SMatthew G. Knepley PetscInt subPoint;
3308dd05d810SMatthew G. Knepley PetscErrorCode ierr;
3309dd05d810SMatthew G. Knepley
3310dd05d810SMatthew G. Knepley ierr = PetscFindInt(point, numSubPoints, subPoints, &subPoint);
3311dd05d810SMatthew G. Knepley if (ierr) return -1;
3312dd05d810SMatthew G. Knepley return subPoint < 0 ? subPoint : firstSubPoint + (subIndices ? subIndices[subPoint] : subPoint);
3313dd05d810SMatthew G. Knepley }
3314dd05d810SMatthew G. Knepley
DMPlexFilterLabels_Internal(DM dm,const PetscInt numSubPoints[],const PetscInt * subpoints[],const PetscInt firstSubPoint[],DM subdm)3315d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexFilterLabels_Internal(DM dm, const PetscInt numSubPoints[], const PetscInt *subpoints[], const PetscInt firstSubPoint[], DM subdm)
3316d71ae5a4SJacob Faibussowitsch {
3317695799ffSMatthew G. Knepley DMLabel depthLabel;
3318212103e5SMatthew Knepley PetscInt Nl, l, d;
3319212103e5SMatthew Knepley
3320212103e5SMatthew Knepley PetscFunctionBegin;
3321695799ffSMatthew G. Knepley // Reset depth label for fast lookup
3322695799ffSMatthew G. Knepley PetscCall(DMPlexGetDepthLabel(dm, &depthLabel));
3323695799ffSMatthew G. Knepley PetscCall(DMLabelMakeAllInvalid_Internal(depthLabel));
33249566063dSJacob Faibussowitsch PetscCall(DMGetNumLabels(dm, &Nl));
3325212103e5SMatthew Knepley for (l = 0; l < Nl; ++l) {
3326212103e5SMatthew Knepley DMLabel label, newlabel;
3327212103e5SMatthew Knepley const char *lname;
3328d56405f8SMatthew G. Knepley PetscBool isDepth, isDim, isCelltype, isVTK;
3329212103e5SMatthew Knepley IS valueIS;
3330212103e5SMatthew Knepley const PetscInt *values;
3331212103e5SMatthew Knepley PetscInt Nv, v;
3332212103e5SMatthew Knepley
33339566063dSJacob Faibussowitsch PetscCall(DMGetLabelName(dm, l, &lname));
33349566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(lname, "depth", &isDepth));
33359566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(lname, "dim", &isDim));
33369566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(lname, "celltype", &isCelltype));
33379566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(lname, "vtk", &isVTK));
3338d56405f8SMatthew G. Knepley if (isDepth || isDim || isCelltype || isVTK) continue;
33399566063dSJacob Faibussowitsch PetscCall(DMCreateLabel(subdm, lname));
33409566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, lname, &label));
33419566063dSJacob Faibussowitsch PetscCall(DMGetLabel(subdm, lname, &newlabel));
33429566063dSJacob Faibussowitsch PetscCall(DMLabelGetDefaultValue(label, &v));
33439566063dSJacob Faibussowitsch PetscCall(DMLabelSetDefaultValue(newlabel, v));
33449566063dSJacob Faibussowitsch PetscCall(DMLabelGetValueIS(label, &valueIS));
33459566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(valueIS, &Nv));
33469566063dSJacob Faibussowitsch PetscCall(ISGetIndices(valueIS, &values));
3347212103e5SMatthew Knepley for (v = 0; v < Nv; ++v) {
3348212103e5SMatthew Knepley IS pointIS;
3349212103e5SMatthew Knepley const PetscInt *points;
3350212103e5SMatthew Knepley PetscInt Np, p;
3351212103e5SMatthew Knepley
33529566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(label, values[v], &pointIS));
33539566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(pointIS, &Np));
33549566063dSJacob Faibussowitsch PetscCall(ISGetIndices(pointIS, &points));
3355212103e5SMatthew Knepley for (p = 0; p < Np; ++p) {
3356212103e5SMatthew Knepley const PetscInt point = points[p];
3357f117cc94SBrad Aagaard PetscInt subp, subdepth;
3358212103e5SMatthew Knepley
33599566063dSJacob Faibussowitsch PetscCall(DMPlexGetPointDepth(dm, point, &d));
3360f117cc94SBrad Aagaard PetscCall(DMPlexGetDepth(subdm, &subdepth));
3361f117cc94SBrad Aagaard if (d > subdepth) continue;
3362212103e5SMatthew Knepley subp = DMPlexFilterPoint_Internal(point, firstSubPoint[d], numSubPoints[d], subpoints[d]);
33639566063dSJacob Faibussowitsch if (subp >= 0) PetscCall(DMLabelSetValue(newlabel, subp, values[v]));
3364212103e5SMatthew Knepley }
33659566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(pointIS, &points));
33669566063dSJacob Faibussowitsch PetscCall(ISDestroy(&pointIS));
3367212103e5SMatthew Knepley }
33689566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(valueIS, &values));
33699566063dSJacob Faibussowitsch PetscCall(ISDestroy(&valueIS));
3370212103e5SMatthew Knepley }
33713ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS);
3372212103e5SMatthew Knepley }
3373212103e5SMatthew Knepley
DMPlexCreateSubmeshGeneric_Interpolated(DM dm,DMLabel label,PetscInt value,PetscBool markedFaces,PetscBool isCohesive,PetscInt cellHeight,PetscBool ignoreLabelHalo,PetscBool sanitizeSubmesh,PetscSF * ownershipTransferSF,DM subdm)337430cbcd5dSksagiyam static PetscErrorCode DMPlexCreateSubmeshGeneric_Interpolated(DM dm, DMLabel label, PetscInt value, PetscBool markedFaces, PetscBool isCohesive, PetscInt cellHeight, PetscBool ignoreLabelHalo, PetscBool sanitizeSubmesh, PetscSF *ownershipTransferSF, DM subdm)
3375d71ae5a4SJacob Faibussowitsch {
337682f516ccSBarry Smith MPI_Comm comm;
337753156dfcSMatthew G. Knepley DMLabel subpointMap;
3378efa14ee0SMatthew G Knepley IS *subpointIS;
3379efa14ee0SMatthew G Knepley const PetscInt **subpoints;
33803982b651SMatthew G. Knepley PetscInt *numSubPoints, *firstSubPoint, *coneNew, *orntNew;
33813e98c3d0Sksagiyam PetscInt totSubPoints = 0, maxConeSize, dim, sdim, cdim, p, d, coordinate_type;
33820d366550SMatthew G. Knepley PetscMPIInt rank;
3383e6ccafaeSMatthew G Knepley
3384e6ccafaeSMatthew G Knepley PetscFunctionBegin;
33859566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)dm, &comm));
33869566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank));
3387efa14ee0SMatthew G Knepley /* Create subpointMap which marks the submesh */
33889566063dSJacob Faibussowitsch PetscCall(DMLabelCreate(PETSC_COMM_SELF, "subpoint_map", &subpointMap));
33899566063dSJacob Faibussowitsch PetscCall(DMPlexSetSubpointMap(subdm, subpointMap));
3390bec263e5SMatthew G. Knepley if (cellHeight) {
33919566063dSJacob Faibussowitsch if (isCohesive) PetscCall(DMPlexMarkCohesiveSubmesh_Interpolated(dm, label, value, subpointMap, subdm));
33925390be7dSMatthew G. Knepley else PetscCall(DMPlexMarkSubmesh_Interpolated(dm, label, value, markedFaces, PETSC_TRUE, subpointMap, subdm));
3393bec263e5SMatthew G. Knepley } else {
3394bec263e5SMatthew G. Knepley DMLabel depth;
3395bec263e5SMatthew G. Knepley IS pointIS;
3396bec263e5SMatthew G. Knepley const PetscInt *points;
339771f1c950SStefano Zampini PetscInt numPoints = 0, pStart, pEnd;
33984d00ad26Sksagiyam PetscBool *isGhost = NULL;
3399bec263e5SMatthew G. Knepley
340071f1c950SStefano Zampini PetscCall(DMPlexGetChart(dm, &pStart, &pEnd));
34019566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthLabel(dm, &depth));
340271f1c950SStefano Zampini if (label) PetscCall(DMLabelGetStratumIS(label, value, &pointIS));
340371f1c950SStefano Zampini else {
340471f1c950SStefano Zampini PetscInt cStart, cEnd;
340571f1c950SStefano Zampini
340671f1c950SStefano Zampini PetscCall(DMPlexGetHeightStratum(dm, 0, &cStart, &cEnd));
340771f1c950SStefano Zampini PetscCall(ISCreateStride(PETSC_COMM_SELF, cEnd - cStart, cStart, 1, &pointIS));
340871f1c950SStefano Zampini }
3409b85c8bf9SMatthew G. Knepley if (pointIS) {
34109566063dSJacob Faibussowitsch PetscCall(ISGetIndices(pointIS, &points));
34119566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(pointIS, &numPoints));
3412b85c8bf9SMatthew G. Knepley }
34134d00ad26Sksagiyam if (ignoreLabelHalo) {
34144d00ad26Sksagiyam PetscSF pointSF;
341571f1c950SStefano Zampini PetscInt nleaves;
34164d00ad26Sksagiyam const PetscInt *ilocal = NULL;
34174d00ad26Sksagiyam
34184d00ad26Sksagiyam PetscCall(DMGetPointSF(dm, &pointSF));
34194d00ad26Sksagiyam PetscCall(PetscSFGetGraph(pointSF, NULL, &nleaves, &ilocal, NULL));
34204d00ad26Sksagiyam PetscCall(PetscMalloc1(pEnd - pStart, &isGhost));
34214d00ad26Sksagiyam for (p = 0; p < pEnd - pStart; ++p) isGhost[p] = PETSC_FALSE;
34224d00ad26Sksagiyam for (p = 0; p < nleaves; ++p) isGhost[(ilocal ? ilocal[p] : p) - pStart] = PETSC_TRUE;
34234d00ad26Sksagiyam }
3424bec263e5SMatthew G. Knepley for (p = 0; p < numPoints; ++p) {
3425bec263e5SMatthew G. Knepley PetscInt *closure = NULL;
3426bec263e5SMatthew G. Knepley PetscInt closureSize, c, pdim;
3427bec263e5SMatthew G. Knepley
342871f1c950SStefano Zampini if (isGhost && isGhost[points[p] - pStart]) continue;
34299566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(dm, points[p], PETSC_TRUE, &closureSize, &closure));
3430bec263e5SMatthew G. Knepley for (c = 0; c < closureSize * 2; c += 2) {
34319566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(depth, closure[c], &pdim));
34329566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(subpointMap, closure[c], pdim));
3433bec263e5SMatthew G. Knepley }
34349566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dm, points[p], PETSC_TRUE, &closureSize, &closure));
3435bec263e5SMatthew G. Knepley }
34364d00ad26Sksagiyam PetscCall(PetscFree(isGhost));
34379566063dSJacob Faibussowitsch if (pointIS) PetscCall(ISRestoreIndices(pointIS, &points));
34389566063dSJacob Faibussowitsch PetscCall(ISDestroy(&pointIS));
3439bec263e5SMatthew G. Knepley }
3440efa14ee0SMatthew G Knepley /* Setup chart */
34419566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim));
3442dd05d810SMatthew G. Knepley PetscCall(DMGetCoordinateDim(dm, &cdim));
34439566063dSJacob Faibussowitsch PetscCall(PetscMalloc4(dim + 1, &numSubPoints, dim + 1, &firstSubPoint, dim + 1, &subpointIS, dim + 1, &subpoints));
3444e6ccafaeSMatthew G Knepley for (d = 0; d <= dim; ++d) {
34459566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumSize(subpointMap, d, &numSubPoints[d]));
3446e6ccafaeSMatthew G Knepley totSubPoints += numSubPoints[d];
3447e6ccafaeSMatthew G Knepley }
3448dd05d810SMatthew G. Knepley // Determine submesh dimension
3449dd05d810SMatthew G. Knepley PetscCall(DMGetDimension(subdm, &sdim));
3450dd05d810SMatthew G. Knepley if (sdim > 0) {
3451dd05d810SMatthew G. Knepley // Calling function knows what dimension to use, and we include neighboring cells as well
3452dd05d810SMatthew G. Knepley sdim = dim;
3453dd05d810SMatthew G. Knepley } else {
3454dd05d810SMatthew G. Knepley // We reset the subdimension based on what is being selected
3455dd05d810SMatthew G. Knepley PetscInt lsdim;
3456dd05d810SMatthew G. Knepley for (lsdim = dim; lsdim >= 0; --lsdim)
3457dd05d810SMatthew G. Knepley if (numSubPoints[lsdim]) break;
3458462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&lsdim, &sdim, 1, MPIU_INT, MPI_MAX, comm));
3459dd05d810SMatthew G. Knepley PetscCall(DMSetDimension(subdm, sdim));
3460dd05d810SMatthew G. Knepley PetscCall(DMSetCoordinateDim(subdm, cdim));
3461dd05d810SMatthew G. Knepley }
34629566063dSJacob Faibussowitsch PetscCall(DMPlexSetChart(subdm, 0, totSubPoints));
34639566063dSJacob Faibussowitsch PetscCall(DMPlexSetVTKCellHeight(subdm, cellHeight));
3464e6ccafaeSMatthew G Knepley /* Set cone sizes */
3465dd05d810SMatthew G. Knepley firstSubPoint[sdim] = 0;
3466dd05d810SMatthew G. Knepley firstSubPoint[0] = firstSubPoint[sdim] + numSubPoints[sdim];
3467dd05d810SMatthew G. Knepley if (sdim > 1) firstSubPoint[sdim - 1] = firstSubPoint[0] + numSubPoints[0];
3468dd05d810SMatthew G. Knepley if (sdim > 2) firstSubPoint[sdim - 2] = firstSubPoint[sdim - 1] + numSubPoints[sdim - 1];
3469dd05d810SMatthew G. Knepley for (d = 0; d <= sdim; ++d) {
34709566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(subpointMap, d, &subpointIS[d]));
34719566063dSJacob Faibussowitsch if (subpointIS[d]) PetscCall(ISGetIndices(subpointIS[d], &subpoints[d]));
3472e6ccafaeSMatthew G Knepley }
3473412e9a14SMatthew G. Knepley /* We do not want this label automatically computed, instead we compute it here */
34749566063dSJacob Faibussowitsch PetscCall(DMCreateLabel(subdm, "celltype"));
3475dd05d810SMatthew G. Knepley for (d = 0; d <= sdim; ++d) {
3476e6ccafaeSMatthew G Knepley for (p = 0; p < numSubPoints[d]; ++p) {
3477e6ccafaeSMatthew G Knepley const PetscInt point = subpoints[d][p];
3478e6ccafaeSMatthew G Knepley const PetscInt subpoint = firstSubPoint[d] + p;
3479e6ccafaeSMatthew G Knepley const PetscInt *cone;
348015100a53SVaclav Hapla PetscInt coneSize;
3481e6ccafaeSMatthew G Knepley
34829566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, point, &coneSize));
3483dd05d810SMatthew G. Knepley if (cellHeight && (d == sdim)) {
348415100a53SVaclav Hapla PetscInt coneSizeNew, c, val;
348515100a53SVaclav Hapla
34869566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, point, &cone));
3487e6ccafaeSMatthew G Knepley for (c = 0, coneSizeNew = 0; c < coneSize; ++c) {
34889566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(subpointMap, cone[c], &val));
3489e6ccafaeSMatthew G Knepley if (val >= 0) coneSizeNew++;
3490e6ccafaeSMatthew G Knepley }
34919566063dSJacob Faibussowitsch PetscCall(DMPlexSetConeSize(subdm, subpoint, coneSizeNew));
34929566063dSJacob Faibussowitsch PetscCall(DMPlexSetCellType(subdm, subpoint, DM_POLYTOPE_FV_GHOST));
349315100a53SVaclav Hapla } else {
349415100a53SVaclav Hapla DMPolytopeType ct;
349515100a53SVaclav Hapla
349615100a53SVaclav Hapla PetscCall(DMPlexSetConeSize(subdm, subpoint, coneSize));
349715100a53SVaclav Hapla PetscCall(DMPlexGetCellType(dm, point, &ct));
349815100a53SVaclav Hapla PetscCall(DMPlexSetCellType(subdm, subpoint, ct));
3499e6ccafaeSMatthew G Knepley }
3500e6ccafaeSMatthew G Knepley }
3501e6ccafaeSMatthew G Knepley }
35029566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&subpointMap));
35039566063dSJacob Faibussowitsch PetscCall(DMSetUp(subdm));
3504e6ccafaeSMatthew G Knepley /* Set cones */
35059566063dSJacob Faibussowitsch PetscCall(DMPlexGetMaxSizes(dm, &maxConeSize, NULL));
35069566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(maxConeSize, &coneNew, maxConeSize, &orntNew));
3507dd05d810SMatthew G. Knepley for (d = 0; d <= sdim; ++d) {
3508e6ccafaeSMatthew G Knepley for (p = 0; p < numSubPoints[d]; ++p) {
3509e6ccafaeSMatthew G Knepley const PetscInt point = subpoints[d][p];
3510e6ccafaeSMatthew G Knepley const PetscInt subpoint = firstSubPoint[d] + p;
35110e49e2e2SMatthew G. Knepley const PetscInt *cone, *ornt;
35120d366550SMatthew G. Knepley PetscInt coneSize, subconeSize, coneSizeNew, c, subc, fornt = 0;
3513e6ccafaeSMatthew G Knepley
3514dd05d810SMatthew G. Knepley if (d == sdim - 1) {
35150d366550SMatthew G. Knepley const PetscInt *support, *cone, *ornt;
35160d366550SMatthew G. Knepley PetscInt supportSize, coneSize, s, subc;
35170d366550SMatthew G. Knepley
35189566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(dm, point, &support));
35199566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dm, point, &supportSize));
35200d366550SMatthew G. Knepley for (s = 0; s < supportSize; ++s) {
3521064cae4fSPierre Jolivet PetscBool isHybrid = PETSC_FALSE;
3522412e9a14SMatthew G. Knepley
35239566063dSJacob Faibussowitsch PetscCall(DMPlexCellIsHybrid_Internal(dm, support[s], &isHybrid));
3524412e9a14SMatthew G. Knepley if (!isHybrid) continue;
35259566063dSJacob Faibussowitsch PetscCall(PetscFindInt(support[s], numSubPoints[d + 1], subpoints[d + 1], &subc));
35260d366550SMatthew G. Knepley if (subc >= 0) {
35270d366550SMatthew G. Knepley const PetscInt ccell = subpoints[d + 1][subc];
35280d366550SMatthew G. Knepley
35299566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, ccell, &cone));
35309566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, ccell, &coneSize));
35319566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeOrientation(dm, ccell, &ornt));
35320d366550SMatthew G. Knepley for (c = 0; c < coneSize; ++c) {
35330d366550SMatthew G. Knepley if (cone[c] == point) {
35340d366550SMatthew G. Knepley fornt = ornt[c];
35350d366550SMatthew G. Knepley break;
35360d366550SMatthew G. Knepley }
35370d366550SMatthew G. Knepley }
35380d366550SMatthew G. Knepley break;
35390d366550SMatthew G. Knepley }
35400d366550SMatthew G. Knepley }
35410d366550SMatthew G. Knepley }
35429566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, point, &coneSize));
35439566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(subdm, subpoint, &subconeSize));
35449566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, point, &cone));
35459566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeOrientation(dm, point, &ornt));
3546e6ccafaeSMatthew G Knepley for (c = 0, coneSizeNew = 0; c < coneSize; ++c) {
35479566063dSJacob Faibussowitsch PetscCall(PetscFindInt(cone[c], numSubPoints[d - 1], subpoints[d - 1], &subc));
354801a2673eSMatthew G. Knepley if (subc >= 0) {
354901a2673eSMatthew G. Knepley coneNew[coneSizeNew] = firstSubPoint[d - 1] + subc;
35503982b651SMatthew G. Knepley orntNew[coneSizeNew] = ornt[c];
355101a2673eSMatthew G. Knepley ++coneSizeNew;
355201a2673eSMatthew G. Knepley }
3553e6ccafaeSMatthew G Knepley }
355463a3b9bcSJacob Faibussowitsch PetscCheck(coneSizeNew == subconeSize, comm, PETSC_ERR_PLIB, "Number of cone points located %" PetscInt_FMT " does not match subcone size %" PetscInt_FMT, coneSizeNew, subconeSize);
35559566063dSJacob Faibussowitsch PetscCall(DMPlexSetCone(subdm, subpoint, coneNew));
35569566063dSJacob Faibussowitsch PetscCall(DMPlexSetConeOrientation(subdm, subpoint, orntNew));
35579566063dSJacob Faibussowitsch if (fornt < 0) PetscCall(DMPlexOrientPoint(subdm, subpoint, fornt));
3558e6ccafaeSMatthew G Knepley }
3559e6ccafaeSMatthew G Knepley }
35609566063dSJacob Faibussowitsch PetscCall(PetscFree2(coneNew, orntNew));
35619566063dSJacob Faibussowitsch PetscCall(DMPlexSymmetrize(subdm));
35629566063dSJacob Faibussowitsch PetscCall(DMPlexStratify(subdm));
3563e6ccafaeSMatthew G Knepley /* Build coordinates */
35643e98c3d0Sksagiyam for (coordinate_type = 0; coordinate_type < 2; ++coordinate_type) {
35653e98c3d0Sksagiyam DM coordDM = NULL, subCoordDM = NULL;
35663e98c3d0Sksagiyam PetscSection coordSection = NULL, subCoordSection = NULL;
35673e98c3d0Sksagiyam Vec coordinates = NULL, subCoordinates = NULL;
35683e98c3d0Sksagiyam PetscScalar *coords = NULL, *subCoords = NULL;
3569605a06ccSksagiyam PetscInt bs, numComp, coordSize, firstP, lastP, firstSubP = totSubPoints, lastSubP = -1, numFields;
357024640c55SToby Isaac const char *name;
35713e98c3d0Sksagiyam PetscBool localized = (PetscBool)coordinate_type;
3572e6ccafaeSMatthew G Knepley
35733e98c3d0Sksagiyam if (!dm->coordinates[coordinate_type].dm) continue;
35743e98c3d0Sksagiyam if (!localized) {
35753e98c3d0Sksagiyam PetscCall(DMGetCoordinateDM(dm, &coordDM));
35763e98c3d0Sksagiyam PetscCall(DMGetCoordinateDM(subdm, &subCoordDM));
35773e98c3d0Sksagiyam } else {
35783e98c3d0Sksagiyam {
35793e98c3d0Sksagiyam PetscInt localizationHeight;
35803e98c3d0Sksagiyam PetscBool sparseLocalize;
35813e98c3d0Sksagiyam
35823e98c3d0Sksagiyam PetscCall(DMGetSparseLocalize(dm, &sparseLocalize));
35833e98c3d0Sksagiyam PetscCall(DMSetSparseLocalize(subdm, sparseLocalize));
35843e98c3d0Sksagiyam PetscCall(DMGetCoordinateDM(dm, &coordDM));
35853e98c3d0Sksagiyam PetscCall(DMGetCoordinateDM(subdm, &subCoordDM));
35863e98c3d0Sksagiyam PetscCall(DMPlexGetMaxProjectionHeight(coordDM, &localizationHeight));
35873e98c3d0Sksagiyam PetscCall(DMPlexSetMaxProjectionHeight(subCoordDM, localizationHeight - (dim - sdim) - cellHeight));
35883e98c3d0Sksagiyam PetscUseTypeMethod(subdm, createcellcoordinatedm, &subCoordDM);
35893e98c3d0Sksagiyam PetscCall(DMSetCellCoordinateDM(subdm, subCoordDM));
35903e98c3d0Sksagiyam PetscCall(DMDestroy(&subCoordDM));
35913e98c3d0Sksagiyam }
35923e98c3d0Sksagiyam PetscCall(DMGetCellCoordinateDM(dm, &coordDM));
35933e98c3d0Sksagiyam PetscCall(DMGetCellCoordinateDM(subdm, &subCoordDM));
35943e98c3d0Sksagiyam }
35954c712d99Sksagiyam PetscCall(DMGetNumFields(coordDM, &numFields));
35964c712d99Sksagiyam if (numFields > 0) {
35974c712d99Sksagiyam PetscFE fe = NULL;
35984c712d99Sksagiyam PetscSpace P = NULL;
35994c712d99Sksagiyam PetscClassId id;
36004c712d99Sksagiyam PetscInt degree;
36014c712d99Sksagiyam
36024c712d99Sksagiyam PetscCall(DMGetField(coordDM, 0, NULL, (PetscObject *)&fe));
36034c712d99Sksagiyam PetscCall(PetscObjectGetClassId((PetscObject)fe, &id));
36044c712d99Sksagiyam if (id == PETSCFE_CLASSID) {
36054c712d99Sksagiyam if (sdim == dim && cellHeight == 0) {
36064c712d99Sksagiyam /* TODO: Handle Field labels correctly */
36074c712d99Sksagiyam PetscCall(DMSetField(subCoordDM, 0, NULL, (PetscObject)fe));
36084c712d99Sksagiyam PetscCall(DMCreateDS(subCoordDM));
36094c712d99Sksagiyam } else {
36104c712d99Sksagiyam /* TODO: Reconstruct the lower-dimensional FE more robustly */
36114c712d99Sksagiyam PetscCall(PetscFEGetBasisSpace(fe, &P));
36124c712d99Sksagiyam PetscCall(PetscSpaceGetDegree(P, °ree, NULL));
3613e65c294aSksagiyam PetscCall(DMPlexCreateCoordinateSpace(subdm, degree, localized, PETSC_FALSE));
36144c712d99Sksagiyam }
36154c712d99Sksagiyam }
36164c712d99Sksagiyam }
36173e98c3d0Sksagiyam if (!localized) {
36189566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateSection(dm, &coordSection));
36199566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateSection(subdm, &subCoordSection));
36203e98c3d0Sksagiyam PetscCall(DMGetCoordinatesLocal(dm, &coordinates));
36213e98c3d0Sksagiyam } else {
36223e98c3d0Sksagiyam PetscCall(DMGetCellCoordinateSection(dm, &coordSection));
36233e98c3d0Sksagiyam PetscCall(DMGetCellCoordinateSection(subdm, &subCoordSection));
36243e98c3d0Sksagiyam PetscCall(DMGetCellCoordinatesLocal(dm, &coordinates));
36253e98c3d0Sksagiyam }
36269566063dSJacob Faibussowitsch PetscCall(PetscSectionSetNumFields(subCoordSection, 1));
36279566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldComponents(coordSection, 0, &numComp));
36289566063dSJacob Faibussowitsch PetscCall(PetscSectionSetFieldComponents(subCoordSection, 0, numComp));
36293e98c3d0Sksagiyam PetscCall(PetscSectionGetChart(coordSection, &firstP, &lastP));
36303e98c3d0Sksagiyam for (d = 0; d <= sdim; ++d) {
36313e98c3d0Sksagiyam for (p = 0; p < numSubPoints[d]; ++p) {
36323e98c3d0Sksagiyam const PetscInt point = subpoints[d][p];
36333e98c3d0Sksagiyam const PetscInt subpoint = firstSubPoint[d] + p;
36343e98c3d0Sksagiyam
36353e98c3d0Sksagiyam if (point >= firstP && point < lastP) {
36363e98c3d0Sksagiyam firstSubP = PetscMin(firstSubP, subpoint);
36373e98c3d0Sksagiyam lastSubP = PetscMax(lastSubP, subpoint);
36383e98c3d0Sksagiyam }
36393e98c3d0Sksagiyam }
36403e98c3d0Sksagiyam }
36413e98c3d0Sksagiyam lastSubP += 1;
36423e98c3d0Sksagiyam if (firstSubP == totSubPoints) {
36433e98c3d0Sksagiyam /* Zero if there is no coordinate point. */
36443e98c3d0Sksagiyam firstSubP = 0;
36453e98c3d0Sksagiyam lastSubP = 0;
36463e98c3d0Sksagiyam }
36473e98c3d0Sksagiyam PetscCall(PetscSectionSetChart(subCoordSection, firstSubP, lastSubP));
36483e98c3d0Sksagiyam for (d = 0; d <= sdim; ++d) {
36493e98c3d0Sksagiyam for (p = 0; p < numSubPoints[d]; ++p) {
36503e98c3d0Sksagiyam const PetscInt point = subpoints[d][p];
36513e98c3d0Sksagiyam const PetscInt subpoint = firstSubPoint[d] + p;
3652e6ccafaeSMatthew G Knepley PetscInt dof;
3653e6ccafaeSMatthew G Knepley
36543e98c3d0Sksagiyam if (point >= firstP && point < lastP) {
36553e98c3d0Sksagiyam PetscCall(PetscSectionGetDof(coordSection, point, &dof));
36563e98c3d0Sksagiyam PetscCall(PetscSectionSetDof(subCoordSection, subpoint, dof));
36573e98c3d0Sksagiyam PetscCall(PetscSectionSetFieldDof(subCoordSection, subpoint, 0, dof));
36583e98c3d0Sksagiyam }
36593e98c3d0Sksagiyam }
3660e6ccafaeSMatthew G Knepley }
36619566063dSJacob Faibussowitsch PetscCall(PetscSectionSetUp(subCoordSection));
36629566063dSJacob Faibussowitsch PetscCall(PetscSectionGetStorageSize(subCoordSection, &coordSize));
36639566063dSJacob Faibussowitsch PetscCall(VecCreate(PETSC_COMM_SELF, &subCoordinates));
36649566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)coordinates, &name));
36659566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)subCoordinates, name));
36669566063dSJacob Faibussowitsch PetscCall(VecSetSizes(subCoordinates, coordSize, PETSC_DETERMINE));
3667605a06ccSksagiyam PetscCall(VecGetBlockSize(coordinates, &bs));
3668605a06ccSksagiyam PetscCall(VecSetBlockSize(subCoordinates, bs));
36699566063dSJacob Faibussowitsch PetscCall(VecSetType(subCoordinates, VECSTANDARD));
36709566063dSJacob Faibussowitsch PetscCall(VecGetArray(coordinates, &coords));
36719566063dSJacob Faibussowitsch PetscCall(VecGetArray(subCoordinates, &subCoords));
36723e98c3d0Sksagiyam for (d = 0; d <= sdim; ++d) {
36733e98c3d0Sksagiyam for (p = 0; p < numSubPoints[d]; ++p) {
36743e98c3d0Sksagiyam const PetscInt point = subpoints[d][p];
36753e98c3d0Sksagiyam const PetscInt subpoint = firstSubPoint[d] + p;
3676e6ccafaeSMatthew G Knepley PetscInt dof, off, sdof, soff, d;
3677e6ccafaeSMatthew G Knepley
36783e98c3d0Sksagiyam if (point >= firstP && point < lastP) {
36793e98c3d0Sksagiyam PetscCall(PetscSectionGetDof(coordSection, point, &dof));
36803e98c3d0Sksagiyam PetscCall(PetscSectionGetOffset(coordSection, point, &off));
36813e98c3d0Sksagiyam PetscCall(PetscSectionGetDof(subCoordSection, subpoint, &sdof));
36823e98c3d0Sksagiyam PetscCall(PetscSectionGetOffset(subCoordSection, subpoint, &soff));
36833e98c3d0Sksagiyam PetscCheck(dof == sdof, comm, PETSC_ERR_PLIB, "Coordinate dimension %" PetscInt_FMT " on subpoint %" PetscInt_FMT ", point %" PetscInt_FMT " should be %" PetscInt_FMT, sdof, subpoint, point, dof);
3684efa14ee0SMatthew G Knepley for (d = 0; d < dof; ++d) subCoords[soff + d] = coords[off + d];
3685e6ccafaeSMatthew G Knepley }
36863e98c3d0Sksagiyam }
36873e98c3d0Sksagiyam }
36889566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(coordinates, &coords));
36899566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(subCoordinates, &subCoords));
36903e98c3d0Sksagiyam switch (coordinate_type) {
36913e98c3d0Sksagiyam case 0:
36929566063dSJacob Faibussowitsch PetscCall(DMSetCoordinatesLocal(subdm, subCoordinates));
36933e98c3d0Sksagiyam break;
36943e98c3d0Sksagiyam case 1:
36953e98c3d0Sksagiyam PetscCall(DMSetCellCoordinatesLocal(subdm, subCoordinates));
36963e98c3d0Sksagiyam break;
36973e98c3d0Sksagiyam default:
36983e98c3d0Sksagiyam SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "coordinate_type must be {0, 1}");
36993e98c3d0Sksagiyam }
37009566063dSJacob Faibussowitsch PetscCall(VecDestroy(&subCoordinates));
3701e6ccafaeSMatthew G Knepley }
37023982b651SMatthew G. Knepley /* Build SF: We need this complexity because subpoints might not be selected on the owning process */
370371f1c950SStefano Zampini // TODO parallel subcommunicators
370471f1c950SStefano Zampini PetscMPIInt flag;
370571f1c950SStefano Zampini PetscCallMPI(MPI_Comm_compare(PetscObjectComm((PetscObject)dm), PetscObjectComm((PetscObject)subdm), &flag));
370671f1c950SStefano Zampini if (flag == MPI_CONGRUENT || flag == MPI_IDENT) {
37073982b651SMatthew G. Knepley PetscSF sfPoint, sfPointSub;
37083982b651SMatthew G. Knepley IS subpIS;
37093982b651SMatthew G. Knepley const PetscSFNode *remotePoints;
37105033f954SMatthew G. Knepley PetscSFNode *sremotePoints = NULL, *newLocalPoints = NULL, *newOwners = NULL;
37115033f954SMatthew G. Knepley const PetscInt *localPoints, *subpoints, *rootdegree;
3712dd05d810SMatthew G. Knepley PetscInt *slocalPoints = NULL, *sortedPoints = NULL, *sortedIndices = NULL;
37135033f954SMatthew G. Knepley PetscInt numRoots, numLeaves, numSubpoints = 0, numSubroots, numSubleaves = 0, l, sl = 0, ll = 0, pStart, pEnd, p;
37145033f954SMatthew G. Knepley PetscMPIInt rank, size;
37153982b651SMatthew G. Knepley
37169566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)dm), &rank));
37175033f954SMatthew G. Knepley PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)dm), &size));
37189566063dSJacob Faibussowitsch PetscCall(DMGetPointSF(dm, &sfPoint));
37199566063dSJacob Faibussowitsch PetscCall(DMGetPointSF(subdm, &sfPointSub));
37209566063dSJacob Faibussowitsch PetscCall(DMPlexGetChart(dm, &pStart, &pEnd));
37219566063dSJacob Faibussowitsch PetscCall(DMPlexGetChart(subdm, NULL, &numSubroots));
37229566063dSJacob Faibussowitsch PetscCall(DMPlexGetSubpointIS(subdm, &subpIS));
37233982b651SMatthew G. Knepley if (subpIS) {
3724dd05d810SMatthew G. Knepley PetscBool sorted = PETSC_TRUE;
3725dd05d810SMatthew G. Knepley
37269566063dSJacob Faibussowitsch PetscCall(ISGetIndices(subpIS, &subpoints));
37279566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(subpIS, &numSubpoints));
3728dd05d810SMatthew G. Knepley for (p = 1; p < numSubpoints; ++p) sorted = sorted && (subpoints[p] >= subpoints[p - 1]) ? PETSC_TRUE : PETSC_FALSE;
3729dd05d810SMatthew G. Knepley if (!sorted) {
3730dd05d810SMatthew G. Knepley PetscCall(PetscMalloc2(numSubpoints, &sortedPoints, numSubpoints, &sortedIndices));
3731dd05d810SMatthew G. Knepley for (p = 0; p < numSubpoints; ++p) sortedIndices[p] = p;
3732dd05d810SMatthew G. Knepley PetscCall(PetscArraycpy(sortedPoints, subpoints, numSubpoints));
3733dd05d810SMatthew G. Knepley PetscCall(PetscSortIntWithArray(numSubpoints, sortedPoints, sortedIndices));
3734dd05d810SMatthew G. Knepley }
37353982b651SMatthew G. Knepley }
37369566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(sfPoint, &numRoots, &numLeaves, &localPoints, &remotePoints));
37373982b651SMatthew G. Knepley if (numRoots >= 0) {
37385033f954SMatthew G. Knepley PetscCall(PetscSFComputeDegreeBegin(sfPoint, &rootdegree));
37395033f954SMatthew G. Knepley PetscCall(PetscSFComputeDegreeEnd(sfPoint, &rootdegree));
37409566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(pEnd - pStart, &newLocalPoints, numRoots, &newOwners));
37413982b651SMatthew G. Knepley for (p = 0; p < pEnd - pStart; ++p) {
37423982b651SMatthew G. Knepley newLocalPoints[p].rank = -2;
37433982b651SMatthew G. Knepley newLocalPoints[p].index = -2;
37443982b651SMatthew G. Knepley }
374530cbcd5dSksagiyam for (p = pStart; p < pEnd; ++p) {
374630cbcd5dSksagiyam newOwners[p - pStart].rank = -3;
374730cbcd5dSksagiyam newOwners[p - pStart].index = -3;
374830cbcd5dSksagiyam }
374930cbcd5dSksagiyam if (sanitizeSubmesh) {
375030cbcd5dSksagiyam /* A subpoint is forced to be owned by a rank that owns */
375130cbcd5dSksagiyam /* a subcell that contains the subpoint in its closure. */
375230cbcd5dSksagiyam PetscInt cStart, cEnd, c, clSize, cl;
375330cbcd5dSksagiyam PetscInt *ownedCells, *closure = NULL;
375430cbcd5dSksagiyam
375530cbcd5dSksagiyam /* claim ownership */
375630cbcd5dSksagiyam for (p = 0; p < numSubpoints; ++p) {
375730cbcd5dSksagiyam const PetscInt point = subpoints[p];
375830cbcd5dSksagiyam
375930cbcd5dSksagiyam newLocalPoints[point - pStart].rank = rank;
376030cbcd5dSksagiyam newLocalPoints[point - pStart].index = p;
376130cbcd5dSksagiyam }
376230cbcd5dSksagiyam PetscCall(DMGetDimension(subdm, &sdim));
376330cbcd5dSksagiyam PetscCall(DMPlexGetDepthStratum(dm, sdim, &cStart, &cEnd));
376430cbcd5dSksagiyam PetscCall(PetscMalloc1(cEnd - cStart, &ownedCells));
376530cbcd5dSksagiyam for (c = cStart; c < cEnd; ++c) ownedCells[c - cStart] = 0;
376630cbcd5dSksagiyam for (p = 0; p < numSubpoints; ++p) {
376730cbcd5dSksagiyam c = subpoints[p];
376830cbcd5dSksagiyam if (c >= cStart && c < cEnd) ownedCells[c - cStart] = 1;
376930cbcd5dSksagiyam }
377030cbcd5dSksagiyam for (l = 0; l < numLeaves; ++l) {
377130cbcd5dSksagiyam c = localPoints ? localPoints[l] : l;
377230cbcd5dSksagiyam if (c >= cStart && c < cEnd) ownedCells[c - cStart] = 0;
377330cbcd5dSksagiyam }
377430cbcd5dSksagiyam for (c = cStart; c < cEnd; ++c) {
377530cbcd5dSksagiyam if (ownedCells[c - cStart] == 0) continue;
377630cbcd5dSksagiyam PetscCall(DMPlexGetTransitiveClosure(dm, c, PETSC_TRUE, &clSize, &closure));
377730cbcd5dSksagiyam for (cl = 0; cl < clSize * 2; cl += 2) {
377830cbcd5dSksagiyam p = closure[cl];
377930cbcd5dSksagiyam if (newLocalPoints[p - pStart].rank < size) newLocalPoints[p - pStart].rank += size;
378030cbcd5dSksagiyam }
378130cbcd5dSksagiyam PetscCall(DMPlexRestoreTransitiveClosure(dm, c, PETSC_TRUE, &clSize, &closure));
378230cbcd5dSksagiyam }
378330cbcd5dSksagiyam PetscCall(PetscFree(ownedCells));
378430cbcd5dSksagiyam for (p = 0; p < numRoots; ++p) {
378530cbcd5dSksagiyam newOwners[p].rank = newLocalPoints[p].rank;
378630cbcd5dSksagiyam newOwners[p].index = newLocalPoints[p].index;
378730cbcd5dSksagiyam }
378830cbcd5dSksagiyam } else {
37893982b651SMatthew G. Knepley /* Set subleaves */
37903982b651SMatthew G. Knepley for (l = 0; l < numLeaves; ++l) {
37913982b651SMatthew G. Knepley const PetscInt point = localPoints[l];
3792dd05d810SMatthew G. Knepley const PetscInt subpoint = DMPlexFilterPointPerm_Internal(point, 0, numSubpoints, sortedPoints ? sortedPoints : subpoints, sortedIndices);
37933982b651SMatthew G. Knepley
37943982b651SMatthew G. Knepley if (subpoint < 0) continue;
37953982b651SMatthew G. Knepley newLocalPoints[point - pStart].rank = rank;
37963982b651SMatthew G. Knepley newLocalPoints[point - pStart].index = subpoint;
37973982b651SMatthew G. Knepley ++numSubleaves;
37983982b651SMatthew G. Knepley }
37993982b651SMatthew G. Knepley /* Must put in owned subpoints */
3800d9384f27SMatthew G. Knepley for (p = 0; p < numSubpoints; ++p) {
38015033f954SMatthew G. Knepley /* Hold on to currently owned points */
38025033f954SMatthew G. Knepley if (rootdegree[subpoints[p] - pStart]) newOwners[subpoints[p] - pStart].rank = rank + size;
38035033f954SMatthew G. Knepley else newOwners[subpoints[p] - pStart].rank = rank;
3804d9384f27SMatthew G. Knepley newOwners[subpoints[p] - pStart].index = p;
38053982b651SMatthew G. Knepley }
380630cbcd5dSksagiyam }
38076497c311SBarry Smith PetscCall(PetscSFReduceBegin(sfPoint, MPIU_SF_NODE, newLocalPoints, newOwners, MPI_MAXLOC));
38086497c311SBarry Smith PetscCall(PetscSFReduceEnd(sfPoint, MPIU_SF_NODE, newLocalPoints, newOwners, MPI_MAXLOC));
38099371c9d4SSatish Balay for (p = pStart; p < pEnd; ++p)
38109371c9d4SSatish Balay if (newOwners[p - pStart].rank >= size) newOwners[p - pStart].rank -= size;
3811fdb4e32bSksagiyam if (ownershipTransferSF) {
3812fdb4e32bSksagiyam PetscSFNode *iremote1 = NULL, *newOwners1 = NULL;
3813fdb4e32bSksagiyam PetscInt *ilocal1 = NULL;
3814fdb4e32bSksagiyam PetscInt nleaves1, point;
3815fdb4e32bSksagiyam
3816fdb4e32bSksagiyam for (p = 0; p < numSubpoints; ++p) {
3817fdb4e32bSksagiyam point = subpoints[p];
3818fdb4e32bSksagiyam newLocalPoints[point - pStart].index = point;
3819fdb4e32bSksagiyam }
3820fdb4e32bSksagiyam PetscCall(PetscMalloc1(numRoots, &newOwners1));
3821fdb4e32bSksagiyam for (p = 0; p < numRoots; ++p) {
3822fdb4e32bSksagiyam newOwners1[p].rank = -1;
3823fdb4e32bSksagiyam newOwners1[p].index = -1;
3824fdb4e32bSksagiyam }
38256497c311SBarry Smith PetscCall(PetscSFReduceBegin(sfPoint, MPIU_SF_NODE, newLocalPoints, newOwners1, MPI_MAXLOC));
38266497c311SBarry Smith PetscCall(PetscSFReduceEnd(sfPoint, MPIU_SF_NODE, newLocalPoints, newOwners1, MPI_MAXLOC));
3827fdb4e32bSksagiyam for (p = 0, nleaves1 = 0; p < numRoots; ++p) {
3828ac530a7eSPierre Jolivet if (newOwners[p].rank >= 0 && newOwners[p].rank != rank) ++nleaves1;
3829fdb4e32bSksagiyam }
3830fdb4e32bSksagiyam PetscCall(PetscMalloc1(nleaves1, &ilocal1));
3831fdb4e32bSksagiyam PetscCall(PetscMalloc1(nleaves1, &iremote1));
3832fdb4e32bSksagiyam for (p = 0, nleaves1 = 0; p < numRoots; ++p) {
3833fdb4e32bSksagiyam if (newOwners[p].rank >= 0 && newOwners[p].rank != rank) {
3834fdb4e32bSksagiyam ilocal1[nleaves1] = pStart + p;
3835fdb4e32bSksagiyam iremote1[nleaves1].rank = newOwners[p].rank;
3836fdb4e32bSksagiyam iremote1[nleaves1].index = newOwners1[p].index;
3837fdb4e32bSksagiyam ++nleaves1;
3838fdb4e32bSksagiyam }
3839fdb4e32bSksagiyam }
3840fdb4e32bSksagiyam PetscCall(PetscFree(newOwners1));
3841fdb4e32bSksagiyam PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)sfPoint), ownershipTransferSF));
3842fdb4e32bSksagiyam PetscCall(PetscSFSetFromOptions(*ownershipTransferSF));
3843fdb4e32bSksagiyam PetscCall(PetscSFSetGraph(*ownershipTransferSF, pEnd - pStart, nleaves1, ilocal1, PETSC_OWN_POINTER, iremote1, PETSC_OWN_POINTER));
3844fdb4e32bSksagiyam }
384530cbcd5dSksagiyam if (sanitizeSubmesh) {
384630cbcd5dSksagiyam for (p = pStart; p < pEnd; ++p) {
384730cbcd5dSksagiyam newLocalPoints[p - pStart].rank = newOwners[p - pStart].rank;
384830cbcd5dSksagiyam newLocalPoints[p - pStart].index = newOwners[p - pStart].index;
384930cbcd5dSksagiyam }
385030cbcd5dSksagiyam }
38516497c311SBarry Smith PetscCall(PetscSFBcastBegin(sfPoint, MPIU_SF_NODE, newOwners, newLocalPoints, MPI_REPLACE));
38526497c311SBarry Smith PetscCall(PetscSFBcastEnd(sfPoint, MPIU_SF_NODE, newOwners, newLocalPoints, MPI_REPLACE));
385330cbcd5dSksagiyam if (sanitizeSubmesh) {
385430cbcd5dSksagiyam for (p = 0; p < numSubpoints; ++p) {
385530cbcd5dSksagiyam const PetscInt point = subpoints[p];
385630cbcd5dSksagiyam
385730cbcd5dSksagiyam if (newLocalPoints[point - pStart].rank >= 0 && newLocalPoints[point - pStart].rank != rank) ++sl;
385830cbcd5dSksagiyam }
385930cbcd5dSksagiyam PetscCall(PetscMalloc1(sl, &slocalPoints));
386030cbcd5dSksagiyam PetscCall(PetscMalloc1(sl, &sremotePoints));
386130cbcd5dSksagiyam for (p = 0, sl = 0; p < numSubpoints; ++p) {
386230cbcd5dSksagiyam const PetscInt point = subpoints[p];
386330cbcd5dSksagiyam
386430cbcd5dSksagiyam if (newLocalPoints[point - pStart].rank >= 0 && newLocalPoints[point - pStart].rank != rank) {
386530cbcd5dSksagiyam slocalPoints[sl] = p;
386630cbcd5dSksagiyam sremotePoints[sl].rank = newLocalPoints[point - pStart].rank;
386730cbcd5dSksagiyam sremotePoints[sl].index = newLocalPoints[point - pStart].index;
386830cbcd5dSksagiyam PetscCheck(sremotePoints[sl].rank >= 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid remote rank");
386930cbcd5dSksagiyam PetscCheck(sremotePoints[sl].index >= 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid remote subpoint");
387030cbcd5dSksagiyam ++sl;
387130cbcd5dSksagiyam }
387230cbcd5dSksagiyam }
387330cbcd5dSksagiyam } else {
38749566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(numSubleaves, &slocalPoints));
38759566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(numSubleaves, &sremotePoints));
38765033f954SMatthew G. Knepley for (l = 0; l < numLeaves; ++l) {
38773982b651SMatthew G. Knepley const PetscInt point = localPoints[l];
3878dd05d810SMatthew G. Knepley const PetscInt subpoint = DMPlexFilterPointPerm_Internal(point, 0, numSubpoints, sortedPoints ? sortedPoints : subpoints, sortedIndices);
38793982b651SMatthew G. Knepley
38803982b651SMatthew G. Knepley if (subpoint < 0) continue;
38819371c9d4SSatish Balay if (newLocalPoints[point].rank == rank) {
38829371c9d4SSatish Balay ++ll;
38839371c9d4SSatish Balay continue;
38849371c9d4SSatish Balay }
38853982b651SMatthew G. Knepley slocalPoints[sl] = subpoint;
38863982b651SMatthew G. Knepley sremotePoints[sl].rank = newLocalPoints[point].rank;
38873982b651SMatthew G. Knepley sremotePoints[sl].index = newLocalPoints[point].index;
388863a3b9bcSJacob Faibussowitsch PetscCheck(sremotePoints[sl].rank >= 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid remote rank for local point %" PetscInt_FMT, point);
388963a3b9bcSJacob Faibussowitsch PetscCheck(sremotePoints[sl].index >= 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid remote subpoint for local point %" PetscInt_FMT, point);
38903982b651SMatthew G. Knepley ++sl;
38913982b651SMatthew G. Knepley }
38921dca8a05SBarry Smith PetscCheck(sl + ll == numSubleaves, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Mismatch in number of subleaves %" PetscInt_FMT " + %" PetscInt_FMT " != %" PetscInt_FMT, sl, ll, numSubleaves);
389330cbcd5dSksagiyam }
38949566063dSJacob Faibussowitsch PetscCall(PetscFree2(newLocalPoints, newOwners));
38959566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(sfPointSub, numSubroots, sl, slocalPoints, PETSC_OWN_POINTER, sremotePoints, PETSC_OWN_POINTER));
38963982b651SMatthew G. Knepley }
389748a46eb9SPierre Jolivet if (subpIS) PetscCall(ISRestoreIndices(subpIS, &subpoints));
3898dd05d810SMatthew G. Knepley PetscCall(PetscFree2(sortedPoints, sortedIndices));
38993982b651SMatthew G. Knepley }
3900212103e5SMatthew Knepley /* Filter labels */
39019566063dSJacob Faibussowitsch PetscCall(DMPlexFilterLabels_Internal(dm, numSubPoints, subpoints, firstSubPoint, subdm));
3902efa14ee0SMatthew G Knepley /* Cleanup */
3903dd05d810SMatthew G. Knepley for (d = 0; d <= sdim; ++d) {
39049566063dSJacob Faibussowitsch if (subpointIS[d]) PetscCall(ISRestoreIndices(subpointIS[d], &subpoints[d]));
39059566063dSJacob Faibussowitsch PetscCall(ISDestroy(&subpointIS[d]));
3906e6ccafaeSMatthew G Knepley }
39079566063dSJacob Faibussowitsch PetscCall(PetscFree4(numSubPoints, firstSubPoint, subpointIS, subpoints));
39083ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS);
3909e6ccafaeSMatthew G Knepley }
3910e6ccafaeSMatthew G Knepley
DMPlexCreateSubmesh_Interpolated(DM dm,DMLabel vertexLabel,PetscInt value,PetscBool markedFaces,DM subdm)3911d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexCreateSubmesh_Interpolated(DM dm, DMLabel vertexLabel, PetscInt value, PetscBool markedFaces, DM subdm)
3912d71ae5a4SJacob Faibussowitsch {
39133982b651SMatthew G. Knepley PetscFunctionBegin;
391430cbcd5dSksagiyam PetscCall(DMPlexCreateSubmeshGeneric_Interpolated(dm, vertexLabel, value, markedFaces, PETSC_FALSE, 1, PETSC_FALSE, PETSC_FALSE, NULL, subdm));
39153ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS);
39163982b651SMatthew G. Knepley }
39173982b651SMatthew G. Knepley
3918d0fa310fSMatthew G. Knepley /*@
3919e6ccafaeSMatthew G Knepley DMPlexCreateSubmesh - Extract a hypersurface from the mesh using vertices defined by a label
3920e6ccafaeSMatthew G Knepley
3921e6ccafaeSMatthew G Knepley Input Parameters:
3922e6ccafaeSMatthew G Knepley + dm - The original mesh
392320f4b53cSBarry Smith . vertexLabel - The `DMLabel` marking points contained in the surface
3924158acfadSMatthew G. Knepley . value - The label value to use
392520f4b53cSBarry Smith - markedFaces - `PETSC_TRUE` if surface faces are marked in addition to vertices, `PETSC_FALSE` if only vertices are marked
3926e6ccafaeSMatthew G Knepley
3927e6ccafaeSMatthew G Knepley Output Parameter:
3928e6ccafaeSMatthew G Knepley . subdm - The surface mesh
3929e6ccafaeSMatthew G Knepley
3930e6ccafaeSMatthew G Knepley Level: developer
3931e6ccafaeSMatthew G Knepley
393220f4b53cSBarry Smith Note:
393320f4b53cSBarry Smith This function produces a `DMLabel` mapping original points in the submesh to their depth. This can be obtained using `DMPlexGetSubpointMap()`.
393420f4b53cSBarry Smith
39351cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexGetSubpointMap()`, `DMGetLabel()`, `DMLabelSetValue()`
3936830e53efSMatthew G. Knepley @*/
DMPlexCreateSubmesh(DM dm,DMLabel vertexLabel,PetscInt value,PetscBool markedFaces,DM * subdm)3937d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexCreateSubmesh(DM dm, DMLabel vertexLabel, PetscInt value, PetscBool markedFaces, DM *subdm)
3938d71ae5a4SJacob Faibussowitsch {
3939827c4036SVaclav Hapla DMPlexInterpolatedFlag interpolated;
3940827c4036SVaclav Hapla PetscInt dim, cdim;
3941e6ccafaeSMatthew G Knepley
3942e6ccafaeSMatthew G Knepley PetscFunctionBegin;
3943e6ccafaeSMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
39444f572ea9SToby Isaac PetscAssertPointer(subdm, 5);
39459566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim));
39469566063dSJacob Faibussowitsch PetscCall(DMCreate(PetscObjectComm((PetscObject)dm), subdm));
39479566063dSJacob Faibussowitsch PetscCall(DMSetType(*subdm, DMPLEX));
39489566063dSJacob Faibussowitsch PetscCall(DMSetDimension(*subdm, dim - 1));
39499566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDim(dm, &cdim));
39509566063dSJacob Faibussowitsch PetscCall(DMSetCoordinateDim(*subdm, cdim));
39519566063dSJacob Faibussowitsch PetscCall(DMPlexIsInterpolated(dm, &interpolated));
395208401ef6SPierre Jolivet PetscCheck(interpolated != DMPLEX_INTERPOLATED_PARTIAL, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Not for partially interpolated meshes");
3953827c4036SVaclav Hapla if (interpolated) {
39549566063dSJacob Faibussowitsch PetscCall(DMPlexCreateSubmesh_Interpolated(dm, vertexLabel, value, markedFaces, *subdm));
3955e6ccafaeSMatthew G Knepley } else {
39569566063dSJacob Faibussowitsch PetscCall(DMPlexCreateSubmesh_Uninterpolated(dm, vertexLabel, value, *subdm));
3957e6ccafaeSMatthew G Knepley }
39585de52c6dSVaclav Hapla PetscCall(DMPlexCopy_Internal(dm, PETSC_TRUE, PETSC_TRUE, *subdm));
39593ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS);
3960e6ccafaeSMatthew G Knepley }
3961e6ccafaeSMatthew G Knepley
DMPlexCreateCohesiveSubmesh_Uninterpolated(DM dm,PetscBool hasLagrange,const char label[],PetscInt value,DM subdm)3962d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexCreateCohesiveSubmesh_Uninterpolated(DM dm, PetscBool hasLagrange, const char label[], PetscInt value, DM subdm)
3963d71ae5a4SJacob Faibussowitsch {
3964766ab985SMatthew G. Knepley MPI_Comm comm;
3965766ab985SMatthew G. Knepley DMLabel subpointMap;
3966766ab985SMatthew G. Knepley IS subvertexIS;
3967766ab985SMatthew G. Knepley const PetscInt *subVertices;
3968fed694aaSMatthew G. Knepley PetscInt numSubVertices, firstSubVertex, numSubCells, *subCells = NULL;
3969766ab985SMatthew G. Knepley PetscInt *subface, maxConeSize, numSubFaces, firstSubFace, newFacePoint, nFV;
3970412e9a14SMatthew G. Knepley PetscInt c, f;
3971766ab985SMatthew G. Knepley
3972766ab985SMatthew G. Knepley PetscFunctionBegin;
39739566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)dm, &comm));
3974766ab985SMatthew G. Knepley /* Create subpointMap which marks the submesh */
39759566063dSJacob Faibussowitsch PetscCall(DMLabelCreate(PETSC_COMM_SELF, "subpoint_map", &subpointMap));
39769566063dSJacob Faibussowitsch PetscCall(DMPlexSetSubpointMap(subdm, subpointMap));
39779566063dSJacob Faibussowitsch PetscCall(DMPlexMarkCohesiveSubmesh_Uninterpolated(dm, hasLagrange, label, value, subpointMap, &numSubFaces, &nFV, &subCells, subdm));
3978766ab985SMatthew G. Knepley /* Setup chart */
39799566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumSize(subpointMap, 0, &numSubVertices));
39809566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumSize(subpointMap, 2, &numSubCells));
39819566063dSJacob Faibussowitsch PetscCall(DMPlexSetChart(subdm, 0, numSubCells + numSubFaces + numSubVertices));
39829566063dSJacob Faibussowitsch PetscCall(DMPlexSetVTKCellHeight(subdm, 1));
3983766ab985SMatthew G. Knepley /* Set cone sizes */
3984766ab985SMatthew G. Knepley firstSubVertex = numSubCells;
3985766ab985SMatthew G. Knepley firstSubFace = numSubCells + numSubVertices;
3986766ab985SMatthew G. Knepley newFacePoint = firstSubFace;
39879566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(subpointMap, 0, &subvertexIS));
39889566063dSJacob Faibussowitsch if (subvertexIS) PetscCall(ISGetIndices(subvertexIS, &subVertices));
398948a46eb9SPierre Jolivet for (c = 0; c < numSubCells; ++c) PetscCall(DMPlexSetConeSize(subdm, c, 1));
399048a46eb9SPierre Jolivet for (f = firstSubFace; f < firstSubFace + numSubFaces; ++f) PetscCall(DMPlexSetConeSize(subdm, f, nFV));
39919566063dSJacob Faibussowitsch PetscCall(DMSetUp(subdm));
3992d24a712aSStefano Zampini PetscCall(DMLabelDestroy(&subpointMap));
3993766ab985SMatthew G. Knepley /* Create face cones */
39949566063dSJacob Faibussowitsch PetscCall(DMPlexGetMaxSizes(dm, &maxConeSize, NULL));
39959566063dSJacob Faibussowitsch PetscCall(DMGetWorkArray(subdm, maxConeSize, MPIU_INT, (void **)&subface));
3996766ab985SMatthew G. Knepley for (c = 0; c < numSubCells; ++c) {
3997766ab985SMatthew G. Knepley const PetscInt cell = subCells[c];
3998766ab985SMatthew G. Knepley const PetscInt subcell = c;
399987feddfdSMatthew G. Knepley const PetscInt *cone, *cells;
4000064cae4fSPierre Jolivet PetscBool isHybrid = PETSC_FALSE;
400187feddfdSMatthew G. Knepley PetscInt numCells, subVertex, p, v;
4002766ab985SMatthew G. Knepley
40039566063dSJacob Faibussowitsch PetscCall(DMPlexCellIsHybrid_Internal(dm, cell, &isHybrid));
4004412e9a14SMatthew G. Knepley if (!isHybrid) continue;
40059566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, cell, &cone));
400687feddfdSMatthew G. Knepley for (v = 0; v < nFV; ++v) {
40079566063dSJacob Faibussowitsch PetscCall(PetscFindInt(cone[v], numSubVertices, subVertices, &subVertex));
400887feddfdSMatthew G. Knepley subface[v] = firstSubVertex + subVertex;
400987feddfdSMatthew G. Knepley }
40109566063dSJacob Faibussowitsch PetscCall(DMPlexSetCone(subdm, newFacePoint, subface));
40119566063dSJacob Faibussowitsch PetscCall(DMPlexSetCone(subdm, subcell, &newFacePoint));
40129566063dSJacob Faibussowitsch PetscCall(DMPlexGetJoin(dm, nFV, cone, &numCells, &cells));
401327234c99SMatthew G. Knepley /* Not true in parallel
401408401ef6SPierre Jolivet PetscCheck(numCells == 2,PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Cohesive cells should separate two cells"); */
401587feddfdSMatthew G. Knepley for (p = 0; p < numCells; ++p) {
401687feddfdSMatthew G. Knepley PetscInt negsubcell;
4017064cae4fSPierre Jolivet PetscBool isHybrid = PETSC_FALSE;
4018766ab985SMatthew G. Knepley
40199566063dSJacob Faibussowitsch PetscCall(DMPlexCellIsHybrid_Internal(dm, cells[p], &isHybrid));
4020412e9a14SMatthew G. Knepley if (isHybrid) continue;
402187feddfdSMatthew G. Knepley /* I know this is a crap search */
402287feddfdSMatthew G. Knepley for (negsubcell = 0; negsubcell < numSubCells; ++negsubcell) {
402387feddfdSMatthew G. Knepley if (subCells[negsubcell] == cells[p]) break;
4024766ab985SMatthew G. Knepley }
402563a3b9bcSJacob Faibussowitsch PetscCheck(negsubcell != numSubCells, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Could not find negative face neighbor for cohesive cell %" PetscInt_FMT, cell);
40269566063dSJacob Faibussowitsch PetscCall(DMPlexSetCone(subdm, negsubcell, &newFacePoint));
4027766ab985SMatthew G. Knepley }
40289566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreJoin(dm, nFV, cone, &numCells, &cells));
402987feddfdSMatthew G. Knepley ++newFacePoint;
4030766ab985SMatthew G. Knepley }
40319566063dSJacob Faibussowitsch PetscCall(DMRestoreWorkArray(subdm, maxConeSize, MPIU_INT, (void **)&subface));
40329566063dSJacob Faibussowitsch PetscCall(DMPlexSymmetrize(subdm));
40339566063dSJacob Faibussowitsch PetscCall(DMPlexStratify(subdm));
4034766ab985SMatthew G. Knepley /* Build coordinates */
4035766ab985SMatthew G. Knepley {
4036766ab985SMatthew G. Knepley PetscSection coordSection, subCoordSection;
4037766ab985SMatthew G. Knepley Vec coordinates, subCoordinates;
4038766ab985SMatthew G. Knepley PetscScalar *coords, *subCoords;
4039c0e8cf5fSMatthew G. Knepley PetscInt cdim, numComp, coordSize, v;
404024640c55SToby Isaac const char *name;
4041766ab985SMatthew G. Knepley
40429566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDim(dm, &cdim));
40439566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateSection(dm, &coordSection));
40449566063dSJacob Faibussowitsch PetscCall(DMGetCoordinatesLocal(dm, &coordinates));
40459566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateSection(subdm, &subCoordSection));
40469566063dSJacob Faibussowitsch PetscCall(PetscSectionSetNumFields(subCoordSection, 1));
40479566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldComponents(coordSection, 0, &numComp));
40489566063dSJacob Faibussowitsch PetscCall(PetscSectionSetFieldComponents(subCoordSection, 0, numComp));
40499566063dSJacob Faibussowitsch PetscCall(PetscSectionSetChart(subCoordSection, firstSubVertex, firstSubVertex + numSubVertices));
4050766ab985SMatthew G. Knepley for (v = 0; v < numSubVertices; ++v) {
4051766ab985SMatthew G. Knepley const PetscInt vertex = subVertices[v];
4052766ab985SMatthew G. Knepley const PetscInt subvertex = firstSubVertex + v;
4053766ab985SMatthew G. Knepley PetscInt dof;
4054766ab985SMatthew G. Knepley
40559566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(coordSection, vertex, &dof));
40569566063dSJacob Faibussowitsch PetscCall(PetscSectionSetDof(subCoordSection, subvertex, dof));
40579566063dSJacob Faibussowitsch PetscCall(PetscSectionSetFieldDof(subCoordSection, subvertex, 0, dof));
4058766ab985SMatthew G. Knepley }
40599566063dSJacob Faibussowitsch PetscCall(PetscSectionSetUp(subCoordSection));
40609566063dSJacob Faibussowitsch PetscCall(PetscSectionGetStorageSize(subCoordSection, &coordSize));
40619566063dSJacob Faibussowitsch PetscCall(VecCreate(PETSC_COMM_SELF, &subCoordinates));
40629566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)coordinates, &name));
40639566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)subCoordinates, name));
40649566063dSJacob Faibussowitsch PetscCall(VecSetSizes(subCoordinates, coordSize, PETSC_DETERMINE));
40659566063dSJacob Faibussowitsch PetscCall(VecSetBlockSize(subCoordinates, cdim));
40669566063dSJacob Faibussowitsch PetscCall(VecSetType(subCoordinates, VECSTANDARD));
40679566063dSJacob Faibussowitsch PetscCall(VecGetArray(coordinates, &coords));
40689566063dSJacob Faibussowitsch PetscCall(VecGetArray(subCoordinates, &subCoords));
4069766ab985SMatthew G. Knepley for (v = 0; v < numSubVertices; ++v) {
4070766ab985SMatthew G. Knepley const PetscInt vertex = subVertices[v];
4071766ab985SMatthew G. Knepley const PetscInt subvertex = firstSubVertex + v;
4072766ab985SMatthew G. Knepley PetscInt dof, off, sdof, soff, d;
4073766ab985SMatthew G. Knepley
40749566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(coordSection, vertex, &dof));
40759566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(coordSection, vertex, &off));
40769566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(subCoordSection, subvertex, &sdof));
40779566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(subCoordSection, subvertex, &soff));
407863a3b9bcSJacob Faibussowitsch PetscCheck(dof == sdof, comm, PETSC_ERR_PLIB, "Coordinate dimension %" PetscInt_FMT " on subvertex %" PetscInt_FMT ", vertex %" PetscInt_FMT " should be %" PetscInt_FMT, sdof, subvertex, vertex, dof);
4079766ab985SMatthew G. Knepley for (d = 0; d < dof; ++d) subCoords[soff + d] = coords[off + d];
4080766ab985SMatthew G. Knepley }
40819566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(coordinates, &coords));
40829566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(subCoordinates, &subCoords));
40839566063dSJacob Faibussowitsch PetscCall(DMSetCoordinatesLocal(subdm, subCoordinates));
40849566063dSJacob Faibussowitsch PetscCall(VecDestroy(&subCoordinates));
4085766ab985SMatthew G. Knepley }
4086aca35d17SMatthew G. Knepley /* Build SF */
4087aca35d17SMatthew G. Knepley CHKMEMQ;
4088aca35d17SMatthew G. Knepley {
4089aca35d17SMatthew G. Knepley PetscSF sfPoint, sfPointSub;
4090aca35d17SMatthew G. Knepley const PetscSFNode *remotePoints;
4091bdcf2095SMatthew G. Knepley PetscSFNode *sremotePoints, *newLocalPoints, *newOwners;
4092aca35d17SMatthew G. Knepley const PetscInt *localPoints;
4093bdcf2095SMatthew G. Knepley PetscInt *slocalPoints;
409449c26ae4SMatthew G. Knepley PetscInt numRoots, numLeaves, numSubRoots = numSubCells + numSubFaces + numSubVertices, numSubLeaves = 0, l, sl, ll, pStart, pEnd, p, vStart, vEnd;
4095bdcf2095SMatthew G. Knepley PetscMPIInt rank;
4096aca35d17SMatthew G. Knepley
40979566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)dm), &rank));
40989566063dSJacob Faibussowitsch PetscCall(DMGetPointSF(dm, &sfPoint));
40999566063dSJacob Faibussowitsch PetscCall(DMGetPointSF(subdm, &sfPointSub));
41009566063dSJacob Faibussowitsch PetscCall(DMPlexGetChart(dm, &pStart, &pEnd));
41019566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthStratum(dm, 0, &vStart, &vEnd));
41029566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(sfPoint, &numRoots, &numLeaves, &localPoints, &remotePoints));
4103aca35d17SMatthew G. Knepley if (numRoots >= 0) {
4104aca35d17SMatthew G. Knepley /* Only vertices should be shared */
41059566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(pEnd - pStart, &newLocalPoints, numRoots, &newOwners));
4106bdcf2095SMatthew G. Knepley for (p = 0; p < pEnd - pStart; ++p) {
4107bdcf2095SMatthew G. Knepley newLocalPoints[p].rank = -2;
4108bdcf2095SMatthew G. Knepley newLocalPoints[p].index = -2;
4109bdcf2095SMatthew G. Knepley }
41109e0823b2SMatthew G. Knepley /* Set subleaves */
4111aca35d17SMatthew G. Knepley for (l = 0; l < numLeaves; ++l) {
4112aca35d17SMatthew G. Knepley const PetscInt point = localPoints[l];
4113bdcf2095SMatthew G. Knepley const PetscInt subPoint = DMPlexFilterPoint_Internal(point, firstSubVertex, numSubVertices, subVertices);
4114aca35d17SMatthew G. Knepley
411563a3b9bcSJacob Faibussowitsch PetscCheck(!(point < vStart) || !(point >= vEnd), PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Should not be mapping anything but vertices, %" PetscInt_FMT, point);
4116bdcf2095SMatthew G. Knepley if (subPoint < 0) continue;
4117bdcf2095SMatthew G. Knepley newLocalPoints[point - pStart].rank = rank;
4118bdcf2095SMatthew G. Knepley newLocalPoints[point - pStart].index = subPoint;
4119bdcf2095SMatthew G. Knepley ++numSubLeaves;
4120aca35d17SMatthew G. Knepley }
41219e0823b2SMatthew G. Knepley /* Must put in owned subpoints */
41229e0823b2SMatthew G. Knepley for (p = pStart; p < pEnd; ++p) {
41239e0823b2SMatthew G. Knepley const PetscInt subPoint = DMPlexFilterPoint_Internal(p, firstSubVertex, numSubVertices, subVertices);
41249e0823b2SMatthew G. Knepley
41259e0823b2SMatthew G. Knepley if (subPoint < 0) {
41269e0823b2SMatthew G. Knepley newOwners[p - pStart].rank = -3;
41279e0823b2SMatthew G. Knepley newOwners[p - pStart].index = -3;
41289e0823b2SMatthew G. Knepley } else {
41299e0823b2SMatthew G. Knepley newOwners[p - pStart].rank = rank;
41309e0823b2SMatthew G. Knepley newOwners[p - pStart].index = subPoint;
41319e0823b2SMatthew G. Knepley }
4132bdcf2095SMatthew G. Knepley }
41336497c311SBarry Smith PetscCall(PetscSFReduceBegin(sfPoint, MPIU_SF_NODE, newLocalPoints, newOwners, MPI_MAXLOC));
41346497c311SBarry Smith PetscCall(PetscSFReduceEnd(sfPoint, MPIU_SF_NODE, newLocalPoints, newOwners, MPI_MAXLOC));
41356497c311SBarry Smith PetscCall(PetscSFBcastBegin(sfPoint, MPIU_SF_NODE, newOwners, newLocalPoints, MPI_REPLACE));
41366497c311SBarry Smith PetscCall(PetscSFBcastEnd(sfPoint, MPIU_SF_NODE, newOwners, newLocalPoints, MPI_REPLACE));
41379566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(numSubLeaves, &slocalPoints));
41389566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(numSubLeaves, &sremotePoints));
413949c26ae4SMatthew G. Knepley for (l = 0, sl = 0, ll = 0; l < numLeaves; ++l) {
4140bdcf2095SMatthew G. Knepley const PetscInt point = localPoints[l];
4141bdcf2095SMatthew G. Knepley const PetscInt subPoint = DMPlexFilterPoint_Internal(point, firstSubVertex, numSubVertices, subVertices);
4142aca35d17SMatthew G. Knepley
4143aca35d17SMatthew G. Knepley if (subPoint < 0) continue;
41449371c9d4SSatish Balay if (newLocalPoints[point].rank == rank) {
41459371c9d4SSatish Balay ++ll;
41469371c9d4SSatish Balay continue;
41479371c9d4SSatish Balay }
4148aca35d17SMatthew G. Knepley slocalPoints[sl] = subPoint;
4149bdcf2095SMatthew G. Knepley sremotePoints[sl].rank = newLocalPoints[point].rank;
4150bdcf2095SMatthew G. Knepley sremotePoints[sl].index = newLocalPoints[point].index;
415163a3b9bcSJacob Faibussowitsch PetscCheck(sremotePoints[sl].rank >= 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid remote rank for local point %" PetscInt_FMT, point);
415263a3b9bcSJacob Faibussowitsch PetscCheck(sremotePoints[sl].index >= 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid remote subpoint for local point %" PetscInt_FMT, point);
4153aca35d17SMatthew G. Knepley ++sl;
4154aca35d17SMatthew G. Knepley }
41559566063dSJacob Faibussowitsch PetscCall(PetscFree2(newLocalPoints, newOwners));
41561dca8a05SBarry Smith PetscCheck(sl + ll == numSubLeaves, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Mismatch in number of subleaves %" PetscInt_FMT " + %" PetscInt_FMT " != %" PetscInt_FMT, sl, ll, numSubLeaves);
41579566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(sfPointSub, numSubRoots, sl, slocalPoints, PETSC_OWN_POINTER, sremotePoints, PETSC_OWN_POINTER));
4158aca35d17SMatthew G. Knepley }
4159aca35d17SMatthew G. Knepley }
4160aca35d17SMatthew G. Knepley CHKMEMQ;
4161766ab985SMatthew G. Knepley /* Cleanup */
41629566063dSJacob Faibussowitsch if (subvertexIS) PetscCall(ISRestoreIndices(subvertexIS, &subVertices));
41639566063dSJacob Faibussowitsch PetscCall(ISDestroy(&subvertexIS));
41649566063dSJacob Faibussowitsch PetscCall(PetscFree(subCells));
41653ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS);
4166766ab985SMatthew G. Knepley }
4167766ab985SMatthew G. Knepley
DMPlexCreateCohesiveSubmesh_Interpolated(DM dm,const char labelname[],PetscInt value,DM subdm)4168d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexCreateCohesiveSubmesh_Interpolated(DM dm, const char labelname[], PetscInt value, DM subdm)
4169d71ae5a4SJacob Faibussowitsch {
41703982b651SMatthew G. Knepley DMLabel label = NULL;
4171766ab985SMatthew G. Knepley
4172766ab985SMatthew G. Knepley PetscFunctionBegin;
41739566063dSJacob Faibussowitsch if (labelname) PetscCall(DMGetLabel(dm, labelname, &label));
417430cbcd5dSksagiyam PetscCall(DMPlexCreateSubmeshGeneric_Interpolated(dm, label, value, PETSC_FALSE, PETSC_TRUE, 1, PETSC_FALSE, PETSC_FALSE, NULL, subdm));
41753ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS);
4176766ab985SMatthew G. Knepley }
4177766ab985SMatthew G. Knepley
4178cc4c1da9SBarry Smith /*@
417920f4b53cSBarry Smith DMPlexCreateCohesiveSubmesh - Extract from a mesh with cohesive cells the hypersurface defined by one face of the cells. Optionally, a label can be given to restrict the cells.
4180766ab985SMatthew G. Knepley
4181766ab985SMatthew G. Knepley Input Parameters:
4182766ab985SMatthew G. Knepley + dm - The original mesh
418327c04023SMatthew G. Knepley . hasLagrange - The mesh has Lagrange unknowns in the cohesive cells
418420f4b53cSBarry Smith . label - A label name, or `NULL`
418527c04023SMatthew G. Knepley - value - A label value
4186766ab985SMatthew G. Knepley
4187766ab985SMatthew G. Knepley Output Parameter:
4188766ab985SMatthew G. Knepley . subdm - The surface mesh
4189766ab985SMatthew G. Knepley
4190766ab985SMatthew G. Knepley Level: developer
4191766ab985SMatthew G. Knepley
419220f4b53cSBarry Smith Note:
419320f4b53cSBarry Smith This function produces a `DMLabel` mapping original points in the submesh to their depth. This can be obtained using `DMPlexGetSubpointMap()`.
419420f4b53cSBarry Smith
41951cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexGetSubpointMap()`, `DMPlexCreateSubmesh()`
4196c08575a3SMatthew G. Knepley @*/
DMPlexCreateCohesiveSubmesh(DM dm,PetscBool hasLagrange,const char label[],PetscInt value,DM * subdm)4197d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexCreateCohesiveSubmesh(DM dm, PetscBool hasLagrange, const char label[], PetscInt value, DM *subdm)
4198d71ae5a4SJacob Faibussowitsch {
4199c0e8cf5fSMatthew G. Knepley PetscInt dim, cdim, depth;
4200766ab985SMatthew G. Knepley
4201766ab985SMatthew G. Knepley PetscFunctionBegin;
4202766ab985SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
42034f572ea9SToby Isaac PetscAssertPointer(subdm, 5);
42049566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim));
42059566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepth(dm, &depth));
42069566063dSJacob Faibussowitsch PetscCall(DMCreate(PetscObjectComm((PetscObject)dm), subdm));
42079566063dSJacob Faibussowitsch PetscCall(DMSetType(*subdm, DMPLEX));
42089566063dSJacob Faibussowitsch PetscCall(DMSetDimension(*subdm, dim - 1));
42099566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDim(dm, &cdim));
42109566063dSJacob Faibussowitsch PetscCall(DMSetCoordinateDim(*subdm, cdim));
4211766ab985SMatthew G. Knepley if (depth == dim) {
42129566063dSJacob Faibussowitsch PetscCall(DMPlexCreateCohesiveSubmesh_Interpolated(dm, label, value, *subdm));
4213766ab985SMatthew G. Knepley } else {
42149566063dSJacob Faibussowitsch PetscCall(DMPlexCreateCohesiveSubmesh_Uninterpolated(dm, hasLagrange, label, value, *subdm));
4215e6ccafaeSMatthew G Knepley }
42165de52c6dSVaclav Hapla PetscCall(DMPlexCopy_Internal(dm, PETSC_TRUE, PETSC_TRUE, *subdm));
42173ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS);
4218e6ccafaeSMatthew G Knepley }
4219e6ccafaeSMatthew G Knepley
4220bec263e5SMatthew G. Knepley /*@
42210e18dc48SMatthew G. Knepley DMPlexReorderCohesiveSupports - Ensure that face supports for cohesive end caps are ordered
42220e18dc48SMatthew G. Knepley
42230e18dc48SMatthew G. Knepley Not Collective
42240e18dc48SMatthew G. Knepley
42250e18dc48SMatthew G. Knepley Input Parameter:
42260e18dc48SMatthew G. Knepley . dm - The `DM` containing cohesive cells
42270e18dc48SMatthew G. Knepley
42280e18dc48SMatthew G. Knepley Level: developer
42290e18dc48SMatthew G. Knepley
4230a4e35b19SJacob Faibussowitsch Note:
4231a4e35b19SJacob Faibussowitsch For the negative size (first) face, the cohesive cell should be first in the support, and for
4232a4e35b19SJacob Faibussowitsch the positive side (second) face, the cohesive cell should be second in the support.
42330e18dc48SMatthew G. Knepley
42340e18dc48SMatthew G. Knepley .seealso: `DMPlexConstructCohesiveCells()`, `DMPlexCreateCohesiveSubmesh()`
42350e18dc48SMatthew G. Knepley @*/
DMPlexReorderCohesiveSupports(DM dm)42360e18dc48SMatthew G. Knepley PetscErrorCode DMPlexReorderCohesiveSupports(DM dm)
42370e18dc48SMatthew G. Knepley {
42380e18dc48SMatthew G. Knepley PetscInt dim, cStart, cEnd;
42390e18dc48SMatthew G. Knepley
42400e18dc48SMatthew G. Knepley PetscFunctionBegin;
42410e18dc48SMatthew G. Knepley PetscCall(DMGetDimension(dm, &dim));
42420e18dc48SMatthew G. Knepley PetscCall(DMPlexGetTensorPrismBounds_Internal(dm, dim, &cStart, &cEnd));
42430e18dc48SMatthew G. Knepley for (PetscInt c = cStart; c < cEnd; ++c) {
42440e18dc48SMatthew G. Knepley const PetscInt *cone;
42450e18dc48SMatthew G. Knepley PetscInt coneSize;
42460e18dc48SMatthew G. Knepley
42470e18dc48SMatthew G. Knepley PetscCall(DMPlexGetConeSize(dm, c, &coneSize));
42480e18dc48SMatthew G. Knepley PetscCall(DMPlexGetCone(dm, c, &cone));
42490e18dc48SMatthew G. Knepley PetscCheck(coneSize >= 2, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Hybrid cell %" PetscInt_FMT " cone size %" PetscInt_FMT " must be >= 2", c, coneSize);
42500e18dc48SMatthew G. Knepley for (PetscInt s = 0; s < 2; ++s) {
42510e18dc48SMatthew G. Knepley const PetscInt *supp;
42520e18dc48SMatthew G. Knepley PetscInt suppSize, newsupp[2];
42530e18dc48SMatthew G. Knepley
42540e18dc48SMatthew G. Knepley PetscCall(DMPlexGetSupportSize(dm, cone[s], &suppSize));
42550e18dc48SMatthew G. Knepley PetscCall(DMPlexGetSupport(dm, cone[s], &supp));
42560e18dc48SMatthew G. Knepley if (suppSize == 2) {
42570e18dc48SMatthew G. Knepley /* Reorder hybrid end cap support */
42580e18dc48SMatthew G. Knepley if (supp[s] == c) {
42590e18dc48SMatthew G. Knepley newsupp[0] = supp[1];
42600e18dc48SMatthew G. Knepley newsupp[1] = supp[0];
42610e18dc48SMatthew G. Knepley } else {
42620e18dc48SMatthew G. Knepley newsupp[0] = supp[0];
42630e18dc48SMatthew G. Knepley newsupp[1] = supp[1];
42640e18dc48SMatthew G. Knepley }
42650e18dc48SMatthew G. Knepley PetscCheck(newsupp[1 - s] == c, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Hybrid end cap %" PetscInt_FMT " support entry %" PetscInt_FMT " != %" PetscInt_FMT " hybrid cell", cone[s], newsupp[1 - s], c);
42660e18dc48SMatthew G. Knepley PetscCall(DMPlexSetSupport(dm, cone[s], newsupp));
42670e18dc48SMatthew G. Knepley }
42680e18dc48SMatthew G. Knepley }
42690e18dc48SMatthew G. Knepley }
42700e18dc48SMatthew G. Knepley PetscFunctionReturn(PETSC_SUCCESS);
42710e18dc48SMatthew G. Knepley }
42720e18dc48SMatthew G. Knepley
42730e18dc48SMatthew G. Knepley /*@
4274bec263e5SMatthew G. Knepley DMPlexFilter - Extract a subset of mesh cells defined by a label as a separate mesh
4275bec263e5SMatthew G. Knepley
4276bec263e5SMatthew G. Knepley Input Parameters:
4277bec263e5SMatthew G. Knepley + dm - The original mesh
427820f4b53cSBarry Smith . cellLabel - The `DMLabel` marking cells contained in the new mesh
42794d00ad26Sksagiyam . value - The label value to use
428030cbcd5dSksagiyam . ignoreLabelHalo - The flag indicating if labeled points that are in the halo are ignored
428171f1c950SStefano Zampini . sanitizeSubmesh - The flag indicating if a subpoint is forced to be owned by a rank that owns a subcell that contains that point in its closure
428271f1c950SStefano Zampini - comm - The communicator you want the mesh on (currently supports only a sequential communicator or the same communicator of the original mesh)
4283bec263e5SMatthew G. Knepley
42849cde84edSJose E. Roman Output Parameters:
4285fdb4e32bSksagiyam + ownershipTransferSF - The `PetscSF` representing the ownership transfers between parent local meshes due to submeshing.
4286fdb4e32bSksagiyam - subdm - The new mesh
4287bec263e5SMatthew G. Knepley
4288bec263e5SMatthew G. Knepley Level: developer
4289bec263e5SMatthew G. Knepley
429020f4b53cSBarry Smith Note:
429120f4b53cSBarry Smith This function produces a `DMLabel` mapping original points in the submesh to their depth. This can be obtained using `DMPlexGetSubpointMap()`.
429220f4b53cSBarry Smith
4293fdb4e32bSksagiyam On a given rank, the leaves of the ownershipTransferSF are the points in the local mesh that this rank gives up ownership of (in the submesh), and
4294fdb4e32bSksagiyam the remote locations for these leaves are tuples of rank and point that represent the new owners.
4295fdb4e32bSksagiyam
42961cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexGetSubpointMap()`, `DMGetLabel()`, `DMLabelSetValue()`, `DMPlexCreateSubmesh()`
4297bec263e5SMatthew G. Knepley @*/
DMPlexFilter(DM dm,DMLabel cellLabel,PetscInt value,PetscBool ignoreLabelHalo,PetscBool sanitizeSubmesh,MPI_Comm comm,PetscSF * ownershipTransferSF,DM * subdm)429871f1c950SStefano Zampini PetscErrorCode DMPlexFilter(DM dm, DMLabel cellLabel, PetscInt value, PetscBool ignoreLabelHalo, PetscBool sanitizeSubmesh, MPI_Comm comm, PetscSF *ownershipTransferSF, DM *subdm)
4299d71ae5a4SJacob Faibussowitsch {
4300b47cd10cSMatthew G. Knepley PetscInt dim, overlap;
4301bec263e5SMatthew G. Knepley
4302bec263e5SMatthew G. Knepley PetscFunctionBegin;
4303bec263e5SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
430471f1c950SStefano Zampini if (ownershipTransferSF) PetscAssertPointer(ownershipTransferSF, 7);
430571f1c950SStefano Zampini PetscAssertPointer(subdm, 8);
43069566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim));
430771f1c950SStefano Zampini PetscCall(DMCreate(comm, subdm));
43089566063dSJacob Faibussowitsch PetscCall(DMSetType(*subdm, DMPLEX));
4309bec263e5SMatthew G. Knepley /* Extract submesh in place, could be empty on some procs, could have inconsistency if procs do not both extract a shared cell */
431030cbcd5dSksagiyam PetscCall(DMPlexCreateSubmeshGeneric_Interpolated(dm, cellLabel, value, PETSC_FALSE, PETSC_FALSE, 0, ignoreLabelHalo, sanitizeSubmesh, ownershipTransferSF, *subdm));
43115de52c6dSVaclav Hapla PetscCall(DMPlexCopy_Internal(dm, PETSC_TRUE, PETSC_TRUE, *subdm));
4312b47cd10cSMatthew G. Knepley // It is possible to obtain a surface mesh where some faces are in SF
4313b47cd10cSMatthew G. Knepley // We should either mark the mesh as having an overlap, or delete these from the SF
4314b47cd10cSMatthew G. Knepley PetscCall(DMPlexGetOverlap(dm, &overlap));
4315b47cd10cSMatthew G. Knepley if (!overlap) {
4316b47cd10cSMatthew G. Knepley PetscSF sf;
4317b47cd10cSMatthew G. Knepley const PetscInt *leaves;
4318b47cd10cSMatthew G. Knepley PetscInt cStart, cEnd, Nl;
4319b47cd10cSMatthew G. Knepley PetscBool hasSubcell = PETSC_FALSE, ghasSubcell;
4320b47cd10cSMatthew G. Knepley
4321b47cd10cSMatthew G. Knepley PetscCall(DMPlexGetHeightStratum(*subdm, 0, &cStart, &cEnd));
4322b47cd10cSMatthew G. Knepley PetscCall(DMGetPointSF(*subdm, &sf));
4323b47cd10cSMatthew G. Knepley PetscCall(PetscSFGetGraph(sf, NULL, &Nl, &leaves, NULL));
4324b47cd10cSMatthew G. Knepley for (PetscInt l = 0; l < Nl; ++l) {
4325b47cd10cSMatthew G. Knepley const PetscInt point = leaves ? leaves[l] : l;
4326b47cd10cSMatthew G. Knepley
4327b47cd10cSMatthew G. Knepley if (point >= cStart && point < cEnd) {
4328b47cd10cSMatthew G. Knepley hasSubcell = PETSC_TRUE;
4329b47cd10cSMatthew G. Knepley break;
4330b47cd10cSMatthew G. Knepley }
4331b47cd10cSMatthew G. Knepley }
43325440e5dcSBarry Smith PetscCallMPI(MPIU_Allreduce(&hasSubcell, &ghasSubcell, 1, MPI_C_BOOL, MPI_LOR, PetscObjectComm((PetscObject)dm)));
4333b47cd10cSMatthew G. Knepley if (ghasSubcell) PetscCall(DMPlexSetOverlap(*subdm, NULL, 1));
4334b47cd10cSMatthew G. Knepley }
43353ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS);
4336bec263e5SMatthew G. Knepley }
4337bec263e5SMatthew G. Knepley
433864beef6dSMatthew G. Knepley /*@
433920f4b53cSBarry Smith DMPlexGetSubpointMap - Returns a `DMLabel` with point dimension as values
434064beef6dSMatthew G. Knepley
434164beef6dSMatthew G. Knepley Input Parameter:
434220f4b53cSBarry Smith . dm - The submesh `DM`
434364beef6dSMatthew G. Knepley
434464beef6dSMatthew G. Knepley Output Parameter:
434520f4b53cSBarry Smith . subpointMap - The `DMLabel` of all the points from the original mesh in this submesh, or `NULL` if this is not a submesh
434664beef6dSMatthew G. Knepley
434764beef6dSMatthew G. Knepley Level: developer
434864beef6dSMatthew G. Knepley
43491cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexCreateSubmesh()`, `DMPlexGetSubpointIS()`
435064beef6dSMatthew G. Knepley @*/
DMPlexGetSubpointMap(DM dm,DMLabel * subpointMap)4351d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexGetSubpointMap(DM dm, DMLabel *subpointMap)
4352d71ae5a4SJacob Faibussowitsch {
4353e6ccafaeSMatthew G Knepley PetscFunctionBegin;
4354e6ccafaeSMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
43554f572ea9SToby Isaac PetscAssertPointer(subpointMap, 2);
435665663942SMatthew G. Knepley *subpointMap = ((DM_Plex *)dm->data)->subpointMap;
43573ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS);
4358e6ccafaeSMatthew G Knepley }
4359e6ccafaeSMatthew G Knepley
4360c08575a3SMatthew G. Knepley /*@
436120f4b53cSBarry Smith DMPlexSetSubpointMap - Sets the `DMLabel` with point dimension as values
4362c08575a3SMatthew G. Knepley
4363c08575a3SMatthew G. Knepley Input Parameters:
436420f4b53cSBarry Smith + dm - The submesh `DM`
436520f4b53cSBarry Smith - subpointMap - The `DMLabel` of all the points from the original mesh in this submesh
4366c08575a3SMatthew G. Knepley
4367c08575a3SMatthew G. Knepley Level: developer
4368c08575a3SMatthew G. Knepley
436920f4b53cSBarry Smith Note:
437020f4b53cSBarry Smith Should normally not be called by the user, since it is set in `DMPlexCreateSubmesh()`
437120f4b53cSBarry Smith
43721cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexCreateSubmesh()`, `DMPlexGetSubpointIS()`
4373c08575a3SMatthew G. Knepley @*/
DMPlexSetSubpointMap(DM dm,DMLabel subpointMap)4374d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexSetSubpointMap(DM dm, DMLabel subpointMap)
4375d71ae5a4SJacob Faibussowitsch {
4376e6ccafaeSMatthew G Knepley DM_Plex *mesh = (DM_Plex *)dm->data;
4377285d324eSMatthew G. Knepley DMLabel tmp;
4378e6ccafaeSMatthew G Knepley
4379e6ccafaeSMatthew G Knepley PetscFunctionBegin;
4380e6ccafaeSMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
4381285d324eSMatthew G. Knepley tmp = mesh->subpointMap;
4382e6ccafaeSMatthew G Knepley mesh->subpointMap = subpointMap;
43839566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)mesh->subpointMap));
43849566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&tmp));
43853ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS);
4386e6ccafaeSMatthew G Knepley }
4387e6ccafaeSMatthew G Knepley
DMPlexCreateSubpointIS_Internal(DM dm,IS * subpointIS)4388d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexCreateSubpointIS_Internal(DM dm, IS *subpointIS)
4389d71ae5a4SJacob Faibussowitsch {
439097d8846cSMatthew Knepley DMLabel spmap;
439197d8846cSMatthew Knepley PetscInt depth, d;
439297d8846cSMatthew Knepley
439397d8846cSMatthew Knepley PetscFunctionBegin;
43949566063dSJacob Faibussowitsch PetscCall(DMPlexGetSubpointMap(dm, &spmap));
43959566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepth(dm, &depth));
439697d8846cSMatthew Knepley if (spmap && depth >= 0) {
439797d8846cSMatthew Knepley DM_Plex *mesh = (DM_Plex *)dm->data;
439897d8846cSMatthew Knepley PetscInt *points, *depths;
439997d8846cSMatthew Knepley PetscInt pStart, pEnd, p, off;
440097d8846cSMatthew Knepley
44019566063dSJacob Faibussowitsch PetscCall(DMPlexGetChart(dm, &pStart, &pEnd));
440263a3b9bcSJacob Faibussowitsch PetscCheck(!pStart, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Submeshes must start the point numbering at 0, not %" PetscInt_FMT, pStart);
44039566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(pEnd, &points));
44049566063dSJacob Faibussowitsch PetscCall(DMGetWorkArray(dm, depth + 1, MPIU_INT, &depths));
440597d8846cSMatthew Knepley depths[0] = depth;
440697d8846cSMatthew Knepley depths[1] = 0;
4407ad540459SPierre Jolivet for (d = 2; d <= depth; ++d) depths[d] = depth + 1 - d;
440897d8846cSMatthew Knepley for (d = 0, off = 0; d <= depth; ++d) {
440997d8846cSMatthew Knepley const PetscInt dep = depths[d];
441097d8846cSMatthew Knepley PetscInt depStart, depEnd, n;
441197d8846cSMatthew Knepley
44129566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthStratum(dm, dep, &depStart, &depEnd));
44139566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumSize(spmap, dep, &n));
4414b6555650SPierre Jolivet if ((d < 2 && depth > 1) || d == 1) { /* Only check vertices and cells for now since the map is broken for others */
441563a3b9bcSJacob Faibussowitsch PetscCheck(n == depEnd - depStart, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "The number of mapped submesh points %" PetscInt_FMT " at depth %" PetscInt_FMT " should be %" PetscInt_FMT, n, dep, depEnd - depStart);
441697d8846cSMatthew Knepley } else {
441797d8846cSMatthew Knepley if (!n) {
441897d8846cSMatthew Knepley if (d == 0) {
441997d8846cSMatthew Knepley /* Missing cells */
442097d8846cSMatthew Knepley for (p = 0; p < depEnd - depStart; ++p, ++off) points[off] = -1;
442197d8846cSMatthew Knepley } else {
442297d8846cSMatthew Knepley /* Missing faces */
44231690c2aeSBarry Smith for (p = 0; p < depEnd - depStart; ++p, ++off) points[off] = PETSC_INT_MAX;
442497d8846cSMatthew Knepley }
442597d8846cSMatthew Knepley }
442697d8846cSMatthew Knepley }
442797d8846cSMatthew Knepley if (n) {
442897d8846cSMatthew Knepley IS is;
442997d8846cSMatthew Knepley const PetscInt *opoints;
443097d8846cSMatthew Knepley
44319566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(spmap, dep, &is));
44329566063dSJacob Faibussowitsch PetscCall(ISGetIndices(is, &opoints));
443397d8846cSMatthew Knepley for (p = 0; p < n; ++p, ++off) points[off] = opoints[p];
44349566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(is, &opoints));
44359566063dSJacob Faibussowitsch PetscCall(ISDestroy(&is));
443697d8846cSMatthew Knepley }
443797d8846cSMatthew Knepley }
44389566063dSJacob Faibussowitsch PetscCall(DMRestoreWorkArray(dm, depth + 1, MPIU_INT, &depths));
443963a3b9bcSJacob Faibussowitsch PetscCheck(off == pEnd, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "The number of mapped submesh points %" PetscInt_FMT " should be %" PetscInt_FMT, off, pEnd);
44409566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, pEnd, points, PETSC_OWN_POINTER, subpointIS));
44419566063dSJacob Faibussowitsch PetscCall(PetscObjectStateGet((PetscObject)spmap, &mesh->subpointState));
444297d8846cSMatthew Knepley }
44433ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS);
444497d8846cSMatthew Knepley }
444597d8846cSMatthew Knepley
444664beef6dSMatthew G. Knepley /*@
444720f4b53cSBarry Smith DMPlexGetSubpointIS - Returns an `IS` covering the entire subdm chart with the original points as data
4448e6ccafaeSMatthew G Knepley
4449e6ccafaeSMatthew G Knepley Input Parameter:
445020f4b53cSBarry Smith . dm - The submesh `DM`
4451e6ccafaeSMatthew G Knepley
4452e6ccafaeSMatthew G Knepley Output Parameter:
445320f4b53cSBarry Smith . subpointIS - The `IS` of all the points from the original mesh in this submesh, or `NULL` if this is not a submesh
445464beef6dSMatthew G. Knepley
445564beef6dSMatthew G. Knepley Level: developer
445664beef6dSMatthew G. Knepley
445720f4b53cSBarry Smith Note:
445829d2e75bSMatthew G. Knepley This `IS` is guaranteed to be sorted by the construction of the submesh. However, if the filtering operation removes an entire stratum, then the strata in the submesh can be in a different order, and the `subpointIS` will only be sorted within each stratum.
445920f4b53cSBarry Smith
44601cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexCreateSubmesh()`, `DMPlexGetSubpointMap()`
446164beef6dSMatthew G. Knepley @*/
DMPlexGetSubpointIS(DM dm,IS * subpointIS)4462d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexGetSubpointIS(DM dm, IS *subpointIS)
4463d71ae5a4SJacob Faibussowitsch {
446497d8846cSMatthew Knepley DM_Plex *mesh = (DM_Plex *)dm->data;
446597d8846cSMatthew Knepley DMLabel spmap;
446697d8846cSMatthew Knepley PetscObjectState state;
4467e6ccafaeSMatthew G Knepley
4468e6ccafaeSMatthew G Knepley PetscFunctionBegin;
4469e6ccafaeSMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
44704f572ea9SToby Isaac PetscAssertPointer(subpointIS, 2);
44719566063dSJacob Faibussowitsch PetscCall(DMPlexGetSubpointMap(dm, &spmap));
44729566063dSJacob Faibussowitsch PetscCall(PetscObjectStateGet((PetscObject)spmap, &state));
44739566063dSJacob Faibussowitsch if (state != mesh->subpointState || !mesh->subpointIS) PetscCall(DMPlexCreateSubpointIS_Internal(dm, &mesh->subpointIS));
447497d8846cSMatthew Knepley *subpointIS = mesh->subpointIS;
44753ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS);
4476e6ccafaeSMatthew G Knepley }
4477559a1558SMatthew G. Knepley
4478559a1558SMatthew G. Knepley /*@
447920f4b53cSBarry Smith DMGetEnclosureRelation - Get the relationship between `dmA` and `dmB`
4480559a1558SMatthew G. Knepley
4481559a1558SMatthew G. Knepley Input Parameters:
448220f4b53cSBarry Smith + dmA - The first `DM`
448320f4b53cSBarry Smith - dmB - The second `DM`
4484559a1558SMatthew G. Knepley
4485559a1558SMatthew G. Knepley Output Parameter:
448620f4b53cSBarry Smith . rel - The relation of `dmA` to `dmB`
4487559a1558SMatthew G. Knepley
4488a6e0b375SMatthew G. Knepley Level: intermediate
4489559a1558SMatthew G. Knepley
44901cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMGetEnclosurePoint()`
4491559a1558SMatthew G. Knepley @*/
DMGetEnclosureRelation(DM dmA,DM dmB,DMEnclosureType * rel)4492d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetEnclosureRelation(DM dmA, DM dmB, DMEnclosureType *rel)
4493d71ae5a4SJacob Faibussowitsch {
4494a6e0b375SMatthew G. Knepley DM plexA, plexB, sdm;
4495559a1558SMatthew G. Knepley DMLabel spmap;
4496a6e0b375SMatthew G. Knepley PetscInt pStartA, pEndA, pStartB, pEndB, NpA, NpB;
4497559a1558SMatthew G. Knepley
449844171101SMatthew G. Knepley PetscFunctionBegin;
44994f572ea9SToby Isaac PetscAssertPointer(rel, 3);
4500a6e0b375SMatthew G. Knepley *rel = DM_ENC_NONE;
45013ba16761SJacob Faibussowitsch if (!dmA || !dmB) PetscFunctionReturn(PETSC_SUCCESS);
4502a6e0b375SMatthew G. Knepley PetscValidHeaderSpecific(dmA, DM_CLASSID, 1);
4503064a246eSJacob Faibussowitsch PetscValidHeaderSpecific(dmB, DM_CLASSID, 2);
45049371c9d4SSatish Balay if (dmA == dmB) {
45059371c9d4SSatish Balay *rel = DM_ENC_EQUALITY;
45063ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS);
45079371c9d4SSatish Balay }
45089566063dSJacob Faibussowitsch PetscCall(DMConvert(dmA, DMPLEX, &plexA));
45099566063dSJacob Faibussowitsch PetscCall(DMConvert(dmB, DMPLEX, &plexB));
45109566063dSJacob Faibussowitsch PetscCall(DMPlexGetChart(plexA, &pStartA, &pEndA));
45119566063dSJacob Faibussowitsch PetscCall(DMPlexGetChart(plexB, &pStartB, &pEndB));
4512a6e0b375SMatthew G. Knepley /* Assumption 1: subDMs have smaller charts than the DMs that they originate from
4513a6e0b375SMatthew G. Knepley - The degenerate case of a subdomain which includes all of the domain on some process can be treated as equality */
4514b6555650SPierre Jolivet if (pStartA == pStartB && pEndA == pEndB) {
4515a6e0b375SMatthew G. Knepley *rel = DM_ENC_EQUALITY;
4516a6e0b375SMatthew G. Knepley goto end;
4517559a1558SMatthew G. Knepley }
4518a6e0b375SMatthew G. Knepley NpA = pEndA - pStartA;
4519a6e0b375SMatthew G. Knepley NpB = pEndB - pStartB;
4520a6e0b375SMatthew G. Knepley if (NpA == NpB) goto end;
4521a6e0b375SMatthew G. Knepley sdm = NpA > NpB ? plexB : plexA; /* The other is the original, enclosing dm */
45229566063dSJacob Faibussowitsch PetscCall(DMPlexGetSubpointMap(sdm, &spmap));
4523a6e0b375SMatthew G. Knepley if (!spmap) goto end;
4524a6e0b375SMatthew G. Knepley /* TODO Check the space mapped to by subpointMap is same size as dm */
4525a6e0b375SMatthew G. Knepley if (NpA > NpB) {
4526a6e0b375SMatthew G. Knepley *rel = DM_ENC_SUPERMESH;
4527a6e0b375SMatthew G. Knepley } else {
4528a6e0b375SMatthew G. Knepley *rel = DM_ENC_SUBMESH;
4529a6e0b375SMatthew G. Knepley }
4530a6e0b375SMatthew G. Knepley end:
45319566063dSJacob Faibussowitsch PetscCall(DMDestroy(&plexA));
45329566063dSJacob Faibussowitsch PetscCall(DMDestroy(&plexB));
45333ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS);
4534559a1558SMatthew G. Knepley }
453544171101SMatthew G. Knepley
453644171101SMatthew G. Knepley /*@
453720f4b53cSBarry Smith DMGetEnclosurePoint - Get the point `pA` in `dmA` which corresponds to the point `pB` in `dmB`
453844171101SMatthew G. Knepley
453944171101SMatthew G. Knepley Input Parameters:
454020f4b53cSBarry Smith + dmA - The first `DM`
454120f4b53cSBarry Smith . dmB - The second `DM`
454220f4b53cSBarry Smith . etype - The type of enclosure relation that `dmA` has to `dmB`
454320f4b53cSBarry Smith - pB - A point of `dmB`
454444171101SMatthew G. Knepley
454544171101SMatthew G. Knepley Output Parameter:
454620f4b53cSBarry Smith . pA - The corresponding point of `dmA`
454744171101SMatthew G. Knepley
4548a6e0b375SMatthew G. Knepley Level: intermediate
454944171101SMatthew G. Knepley
45501cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMGetEnclosureRelation()`
455144171101SMatthew G. Knepley @*/
DMGetEnclosurePoint(DM dmA,DM dmB,DMEnclosureType etype,PetscInt pB,PetscInt * pA)4552d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetEnclosurePoint(DM dmA, DM dmB, DMEnclosureType etype, PetscInt pB, PetscInt *pA)
4553d71ae5a4SJacob Faibussowitsch {
4554a6e0b375SMatthew G. Knepley DM sdm;
4555a6e0b375SMatthew G. Knepley IS subpointIS;
4556a6e0b375SMatthew G. Knepley const PetscInt *subpoints;
4557a6e0b375SMatthew G. Knepley PetscInt numSubpoints;
455844171101SMatthew G. Knepley
455944171101SMatthew G. Knepley PetscFunctionBegin;
4560a6e0b375SMatthew G. Knepley /* TODO Cache the IS, making it look like an index */
4561a6e0b375SMatthew G. Knepley switch (etype) {
4562a6e0b375SMatthew G. Knepley case DM_ENC_SUPERMESH:
4563a6e0b375SMatthew G. Knepley sdm = dmB;
45649566063dSJacob Faibussowitsch PetscCall(DMPlexGetSubpointIS(sdm, &subpointIS));
45659566063dSJacob Faibussowitsch PetscCall(ISGetIndices(subpointIS, &subpoints));
4566a6e0b375SMatthew G. Knepley *pA = subpoints[pB];
45679566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(subpointIS, &subpoints));
4568a6e0b375SMatthew G. Knepley break;
4569a6e0b375SMatthew G. Knepley case DM_ENC_SUBMESH:
4570a6e0b375SMatthew G. Knepley sdm = dmA;
45719566063dSJacob Faibussowitsch PetscCall(DMPlexGetSubpointIS(sdm, &subpointIS));
45729566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(subpointIS, &numSubpoints));
45739566063dSJacob Faibussowitsch PetscCall(ISGetIndices(subpointIS, &subpoints));
45749566063dSJacob Faibussowitsch PetscCall(PetscFindInt(pB, numSubpoints, subpoints, pA));
4575a6e0b375SMatthew G. Knepley if (*pA < 0) {
45769566063dSJacob Faibussowitsch PetscCall(DMViewFromOptions(dmA, NULL, "-dm_enc_A_view"));
45779566063dSJacob Faibussowitsch PetscCall(DMViewFromOptions(dmB, NULL, "-dm_enc_B_view"));
457863a3b9bcSJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Point %" PetscInt_FMT " not found in submesh", pB);
4579a6e0b375SMatthew G. Knepley }
45809566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(subpointIS, &subpoints));
4581a6e0b375SMatthew G. Knepley break;
4582a6e0b375SMatthew G. Knepley case DM_ENC_EQUALITY:
4583d71ae5a4SJacob Faibussowitsch case DM_ENC_NONE:
4584d71ae5a4SJacob Faibussowitsch *pA = pB;
4585d71ae5a4SJacob Faibussowitsch break;
45869371c9d4SSatish Balay case DM_ENC_UNKNOWN: {
4587a6e0b375SMatthew G. Knepley DMEnclosureType enc;
458844171101SMatthew G. Knepley
45899566063dSJacob Faibussowitsch PetscCall(DMGetEnclosureRelation(dmA, dmB, &enc));
45909566063dSJacob Faibussowitsch PetscCall(DMGetEnclosurePoint(dmA, dmB, enc, pB, pA));
45919371c9d4SSatish Balay } break;
4592d71ae5a4SJacob Faibussowitsch default:
4593d71ae5a4SJacob Faibussowitsch SETERRQ(PetscObjectComm((PetscObject)dmA), PETSC_ERR_ARG_OUTOFRANGE, "Invalid enclosure type %d", (int)etype);
459444171101SMatthew G. Knepley }
45953ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS);
459644171101SMatthew G. Knepley }
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