1af0996ceSBarry Smith #include <petsc/private/dmpleximpl.h> /*I "petscdmplex.h" I*/ 2c58f1c22SToby Isaac #include <petsc/private/dmlabelimpl.h> /*I "petscdmlabel.h" I*/ 30c312b8eSJed Brown #include <petscsf.h> 4e6ccafaeSMatthew G Knepley 5412e9a14SMatthew G. Knepley static PetscErrorCode DMPlexCellIsHybrid_Internal(DM dm, PetscInt p, PetscBool *isHybrid) 6412e9a14SMatthew G. Knepley { 7412e9a14SMatthew G. Knepley DMPolytopeType ct; 8412e9a14SMatthew G. Knepley 9412e9a14SMatthew G. Knepley PetscFunctionBegin; 109566063dSJacob Faibussowitsch PetscCall(DMPlexGetCellType(dm, p, &ct)); 11412e9a14SMatthew G. Knepley switch (ct) { 12412e9a14SMatthew G. Knepley case DM_POLYTOPE_POINT_PRISM_TENSOR: 13412e9a14SMatthew G. Knepley case DM_POLYTOPE_SEG_PRISM_TENSOR: 14412e9a14SMatthew G. Knepley case DM_POLYTOPE_TRI_PRISM_TENSOR: 15412e9a14SMatthew G. Knepley case DM_POLYTOPE_QUAD_PRISM_TENSOR: 16412e9a14SMatthew G. Knepley *isHybrid = PETSC_TRUE; 17412e9a14SMatthew G. Knepley default: *isHybrid = PETSC_FALSE; 18412e9a14SMatthew G. Knepley } 19412e9a14SMatthew G. Knepley PetscFunctionReturn(0); 20412e9a14SMatthew G. Knepley } 21412e9a14SMatthew G. Knepley 22412e9a14SMatthew G. Knepley static PetscErrorCode DMPlexGetTensorPrismBounds_Internal(DM dm, PetscInt dim, PetscInt *cStart, PetscInt *cEnd) 23412e9a14SMatthew G. Knepley { 24412e9a14SMatthew G. Knepley DMLabel ctLabel; 25412e9a14SMatthew G. Knepley 26412e9a14SMatthew G. Knepley PetscFunctionBegin; 27412e9a14SMatthew G. Knepley if (cStart) *cStart = -1; 28412e9a14SMatthew G. Knepley if (cEnd) *cEnd = -1; 299566063dSJacob Faibussowitsch PetscCall(DMPlexGetCellTypeLabel(dm, &ctLabel)); 30412e9a14SMatthew G. Knepley switch (dim) { 319566063dSJacob Faibussowitsch case 1: PetscCall(DMLabelGetStratumBounds(ctLabel, DM_POLYTOPE_POINT_PRISM_TENSOR, cStart, cEnd));break; 329566063dSJacob Faibussowitsch case 2: PetscCall(DMLabelGetStratumBounds(ctLabel, DM_POLYTOPE_SEG_PRISM_TENSOR, cStart, cEnd));break; 33412e9a14SMatthew G. Knepley case 3: 349566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumBounds(ctLabel, DM_POLYTOPE_TRI_PRISM_TENSOR, cStart, cEnd)); 359566063dSJacob Faibussowitsch if (*cStart < 0) PetscCall(DMLabelGetStratumBounds(ctLabel, DM_POLYTOPE_QUAD_PRISM_TENSOR, cStart, cEnd)); 36412e9a14SMatthew G. Knepley break; 37412e9a14SMatthew G. Knepley default: PetscFunctionReturn(0); 38412e9a14SMatthew G. Knepley } 39412e9a14SMatthew G. Knepley PetscFunctionReturn(0); 40412e9a14SMatthew G. Knepley } 41412e9a14SMatthew G. Knepley 42e752be1aSMatthew G. Knepley static PetscErrorCode DMPlexMarkBoundaryFaces_Internal(DM dm, PetscInt val, PetscInt cellHeight, DMLabel label) 4330560a7bSMatthew G. Knepley { 4430560a7bSMatthew G. Knepley PetscInt fStart, fEnd, f; 4530560a7bSMatthew G. Knepley 4630560a7bSMatthew G. Knepley PetscFunctionBegin; 479566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(dm, cellHeight+1, &fStart, &fEnd)); 4830560a7bSMatthew G. Knepley for (f = fStart; f < fEnd; ++f) { 4930560a7bSMatthew G. Knepley PetscInt supportSize; 5030560a7bSMatthew G. Knepley 519566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dm, f, &supportSize)); 52e752be1aSMatthew G. Knepley if (supportSize == 1) { 53e752be1aSMatthew G. Knepley if (val < 0) { 54e752be1aSMatthew G. Knepley PetscInt *closure = NULL; 55e752be1aSMatthew G. Knepley PetscInt clSize, cl, cval; 56e752be1aSMatthew G. Knepley 579566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(dm, f, PETSC_TRUE, &clSize, &closure)); 58e752be1aSMatthew G. Knepley for (cl = 0; cl < clSize*2; cl += 2) { 599566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, closure[cl], &cval)); 60e752be1aSMatthew G. Knepley if (cval < 0) continue; 619566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(label, f, cval)); 62e752be1aSMatthew G. Knepley break; 63e752be1aSMatthew G. Knepley } 649566063dSJacob Faibussowitsch if (cl == clSize*2) PetscCall(DMLabelSetValue(label, f, 1)); 659566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dm, f, PETSC_TRUE, &clSize, &closure)); 66e752be1aSMatthew G. Knepley } else { 679566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(label, f, val)); 68e752be1aSMatthew G. Knepley } 69e752be1aSMatthew G. Knepley } 7030560a7bSMatthew G. Knepley } 7130560a7bSMatthew G. Knepley PetscFunctionReturn(0); 7230560a7bSMatthew G. Knepley } 7330560a7bSMatthew G. Knepley 74cd0c2139SMatthew G Knepley /*@ 75cd0c2139SMatthew G Knepley DMPlexMarkBoundaryFaces - Mark all faces on the boundary 76cd0c2139SMatthew G Knepley 77cd0c2139SMatthew G Knepley Not Collective 78cd0c2139SMatthew G Knepley 79d8d19677SJose E. Roman Input Parameters: 80e752be1aSMatthew G. Knepley + dm - The original DM 81e752be1aSMatthew G. Knepley - val - The marker value, or PETSC_DETERMINE to use some value in the closure (or 1 if none are found) 82cd0c2139SMatthew G Knepley 83cd0c2139SMatthew G Knepley Output Parameter: 84e752be1aSMatthew G. Knepley . label - The DMLabel marking boundary faces with the given value 85cd0c2139SMatthew G Knepley 86cd0c2139SMatthew G Knepley Level: developer 87cd0c2139SMatthew G Knepley 88c58f1c22SToby Isaac .seealso: DMLabelCreate(), DMCreateLabel() 8909f723d9SJed Brown @*/ 90e752be1aSMatthew G. Knepley PetscErrorCode DMPlexMarkBoundaryFaces(DM dm, PetscInt val, DMLabel label) 91cd0c2139SMatthew G Knepley { 92827c4036SVaclav Hapla DMPlexInterpolatedFlag flg; 93cd0c2139SMatthew G Knepley 94cd0c2139SMatthew G Knepley PetscFunctionBegin; 95827c4036SVaclav Hapla PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 969566063dSJacob Faibussowitsch PetscCall(DMPlexIsInterpolated(dm, &flg)); 97*08401ef6SPierre Jolivet PetscCheck(flg == DMPLEX_INTERPOLATED_FULL,PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "DM is not fully interpolated on this rank"); 989566063dSJacob Faibussowitsch PetscCall(DMPlexMarkBoundaryFaces_Internal(dm, val, 0, label)); 99cd0c2139SMatthew G Knepley PetscFunctionReturn(0); 100cd0c2139SMatthew G Knepley } 101cd0c2139SMatthew G Knepley 102c08575a3SMatthew G. Knepley static PetscErrorCode DMPlexLabelComplete_Internal(DM dm, DMLabel label, PetscBool completeCells) 103b0bf5782SToby Isaac { 104b0bf5782SToby Isaac IS valueIS; 105ac51f24eSSander Arens PetscSF sfPoint; 106b0bf5782SToby Isaac const PetscInt *values; 107ac51f24eSSander Arens PetscInt numValues, v, cStart, cEnd, nroots; 108b0bf5782SToby Isaac 109b0bf5782SToby Isaac PetscFunctionBegin; 1109566063dSJacob Faibussowitsch PetscCall(DMLabelGetNumValues(label, &numValues)); 1119566063dSJacob Faibussowitsch PetscCall(DMLabelGetValueIS(label, &valueIS)); 1129566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(dm,0,&cStart,&cEnd)); 1139566063dSJacob Faibussowitsch PetscCall(ISGetIndices(valueIS, &values)); 114b0bf5782SToby Isaac for (v = 0; v < numValues; ++v) { 115b0bf5782SToby Isaac IS pointIS; 116b0bf5782SToby Isaac const PetscInt *points; 117b0bf5782SToby Isaac PetscInt numPoints, p; 118b0bf5782SToby Isaac 1199566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumSize(label, values[v], &numPoints)); 1209566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(label, values[v], &pointIS)); 1219566063dSJacob Faibussowitsch PetscCall(ISGetIndices(pointIS, &points)); 122b0bf5782SToby Isaac for (p = 0; p < numPoints; ++p) { 123b0bf5782SToby Isaac PetscInt q = points[p]; 124b0bf5782SToby Isaac PetscInt *closure = NULL; 125b0bf5782SToby Isaac PetscInt closureSize, c; 126b0bf5782SToby Isaac 127b0bf5782SToby Isaac if (cStart <= q && q < cEnd && !completeCells) { /* skip cells */ 128b0bf5782SToby Isaac continue; 129b0bf5782SToby Isaac } 1309566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(dm, q, PETSC_TRUE, &closureSize, &closure)); 131b0bf5782SToby Isaac for (c = 0; c < closureSize*2; c += 2) { 1329566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(label, closure[c], values[v])); 133b0bf5782SToby Isaac } 1349566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dm, q, PETSC_TRUE, &closureSize, &closure)); 135b0bf5782SToby Isaac } 1369566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(pointIS, &points)); 1379566063dSJacob Faibussowitsch PetscCall(ISDestroy(&pointIS)); 138b0bf5782SToby Isaac } 1399566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(valueIS, &values)); 1409566063dSJacob Faibussowitsch PetscCall(ISDestroy(&valueIS)); 1419566063dSJacob Faibussowitsch PetscCall(DMGetPointSF(dm, &sfPoint)); 1429566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(sfPoint, &nroots, NULL, NULL, NULL)); 143ac51f24eSSander Arens if (nroots >= 0) { 14426279d81SSanderA DMLabel lblRoots, lblLeaves; 14526279d81SSanderA IS valueIS, pointIS; 14626279d81SSanderA const PetscInt *values; 14726279d81SSanderA PetscInt numValues, v; 14826279d81SSanderA 14926279d81SSanderA /* Pull point contributions from remote leaves into local roots */ 1509566063dSJacob Faibussowitsch PetscCall(DMLabelGather(label, sfPoint, &lblLeaves)); 1519566063dSJacob Faibussowitsch PetscCall(DMLabelGetValueIS(lblLeaves, &valueIS)); 1529566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(valueIS, &numValues)); 1539566063dSJacob Faibussowitsch PetscCall(ISGetIndices(valueIS, &values)); 15426279d81SSanderA for (v = 0; v < numValues; ++v) { 15526279d81SSanderA const PetscInt value = values[v]; 15626279d81SSanderA 1579566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(lblLeaves, value, &pointIS)); 1589566063dSJacob Faibussowitsch PetscCall(DMLabelInsertIS(label, pointIS, value)); 1599566063dSJacob Faibussowitsch PetscCall(ISDestroy(&pointIS)); 16026279d81SSanderA } 1619566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(valueIS, &values)); 1629566063dSJacob Faibussowitsch PetscCall(ISDestroy(&valueIS)); 1639566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&lblLeaves)); 16426279d81SSanderA /* Push point contributions from roots into remote leaves */ 1659566063dSJacob Faibussowitsch PetscCall(DMLabelDistribute(label, sfPoint, &lblRoots)); 1669566063dSJacob Faibussowitsch PetscCall(DMLabelGetValueIS(lblRoots, &valueIS)); 1679566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(valueIS, &numValues)); 1689566063dSJacob Faibussowitsch PetscCall(ISGetIndices(valueIS, &values)); 16926279d81SSanderA for (v = 0; v < numValues; ++v) { 17026279d81SSanderA const PetscInt value = values[v]; 17126279d81SSanderA 1729566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(lblRoots, value, &pointIS)); 1739566063dSJacob Faibussowitsch PetscCall(DMLabelInsertIS(label, pointIS, value)); 1749566063dSJacob Faibussowitsch PetscCall(ISDestroy(&pointIS)); 17526279d81SSanderA } 1769566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(valueIS, &values)); 1779566063dSJacob Faibussowitsch PetscCall(ISDestroy(&valueIS)); 1789566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&lblRoots)); 17926279d81SSanderA } 180b0bf5782SToby Isaac PetscFunctionReturn(0); 181b0bf5782SToby Isaac } 182b0bf5782SToby Isaac 1832be2b188SMatthew G Knepley /*@ 1842be2b188SMatthew G Knepley DMPlexLabelComplete - Starting with a label marking points on a surface, we add the transitive closure to the surface 1852be2b188SMatthew G Knepley 1862be2b188SMatthew G Knepley Input Parameters: 1872be2b188SMatthew G Knepley + dm - The DM 1882be2b188SMatthew G Knepley - label - A DMLabel marking the surface points 1892be2b188SMatthew G Knepley 1902be2b188SMatthew G Knepley Output Parameter: 1912be2b188SMatthew G Knepley . label - A DMLabel marking all surface points in the transitive closure 1922be2b188SMatthew G Knepley 1932be2b188SMatthew G Knepley Level: developer 1942be2b188SMatthew G Knepley 1952be2b188SMatthew G Knepley .seealso: DMPlexLabelCohesiveComplete() 1962be2b188SMatthew G Knepley @*/ 1972be2b188SMatthew G Knepley PetscErrorCode DMPlexLabelComplete(DM dm, DMLabel label) 1982be2b188SMatthew G Knepley { 1992be2b188SMatthew G Knepley PetscFunctionBegin; 2009566063dSJacob Faibussowitsch PetscCall(DMPlexLabelComplete_Internal(dm, label, PETSC_TRUE)); 2012be2b188SMatthew G Knepley PetscFunctionReturn(0); 2022be2b188SMatthew G Knepley } 2032be2b188SMatthew G Knepley 2046cf0e42fSMatthew G. Knepley /*@ 205a6e0b375SMatthew G. Knepley DMPlexLabelAddCells - Starting with a label marking points on a surface, we add a cell for each point 2066cf0e42fSMatthew G. Knepley 2076cf0e42fSMatthew G. Knepley Input Parameters: 2086cf0e42fSMatthew G. Knepley + dm - The DM 2096cf0e42fSMatthew G. Knepley - label - A DMLabel marking the surface points 2106cf0e42fSMatthew G. Knepley 2116cf0e42fSMatthew G. Knepley Output Parameter: 2126cf0e42fSMatthew G. Knepley . label - A DMLabel incorporating cells 2136cf0e42fSMatthew G. Knepley 2146cf0e42fSMatthew G. Knepley Level: developer 2156cf0e42fSMatthew G. Knepley 2166cf0e42fSMatthew G. Knepley Note: The cells allow FEM boundary conditions to be applied using the cell geometry 2176cf0e42fSMatthew G. Knepley 218a6e0b375SMatthew G. Knepley .seealso: DMPlexLabelAddFaceCells(), DMPlexLabelComplete(), DMPlexLabelCohesiveComplete() 2196cf0e42fSMatthew G. Knepley @*/ 2206cf0e42fSMatthew G. Knepley PetscErrorCode DMPlexLabelAddCells(DM dm, DMLabel label) 2216cf0e42fSMatthew G. Knepley { 2226cf0e42fSMatthew G. Knepley IS valueIS; 2236cf0e42fSMatthew G. Knepley const PetscInt *values; 224485ad865SMatthew G. Knepley PetscInt numValues, v, cStart, cEnd; 2256cf0e42fSMatthew G. Knepley 2266cf0e42fSMatthew G. Knepley PetscFunctionBegin; 2279566063dSJacob Faibussowitsch PetscCall(DMPlexGetSimplexOrBoxCells(dm, 0, &cStart, &cEnd)); 2289566063dSJacob Faibussowitsch PetscCall(DMLabelGetNumValues(label, &numValues)); 2299566063dSJacob Faibussowitsch PetscCall(DMLabelGetValueIS(label, &valueIS)); 2309566063dSJacob Faibussowitsch PetscCall(ISGetIndices(valueIS, &values)); 2316cf0e42fSMatthew G. Knepley for (v = 0; v < numValues; ++v) { 2326cf0e42fSMatthew G. Knepley IS pointIS; 2336cf0e42fSMatthew G. Knepley const PetscInt *points; 2346cf0e42fSMatthew G. Knepley PetscInt numPoints, p; 2356cf0e42fSMatthew G. Knepley 2369566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumSize(label, values[v], &numPoints)); 2379566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(label, values[v], &pointIS)); 2389566063dSJacob Faibussowitsch PetscCall(ISGetIndices(pointIS, &points)); 2396cf0e42fSMatthew G. Knepley for (p = 0; p < numPoints; ++p) { 2406cf0e42fSMatthew G. Knepley PetscInt *closure = NULL; 241a6e0b375SMatthew G. Knepley PetscInt closureSize, cl; 2426cf0e42fSMatthew G. Knepley 2439566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(dm, points[p], PETSC_FALSE, &closureSize, &closure)); 24422eabd52SMatthew G. Knepley for (cl = closureSize-1; cl > 0; --cl) { 245a6e0b375SMatthew G. Knepley const PetscInt cell = closure[cl*2]; 2469566063dSJacob Faibussowitsch if ((cell >= cStart) && (cell < cEnd)) {PetscCall(DMLabelSetValue(label, cell, values[v])); break;} 24722eabd52SMatthew G. Knepley } 2489566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dm, points[p], PETSC_FALSE, &closureSize, &closure)); 2496cf0e42fSMatthew G. Knepley } 2509566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(pointIS, &points)); 2519566063dSJacob Faibussowitsch PetscCall(ISDestroy(&pointIS)); 2526cf0e42fSMatthew G. Knepley } 2539566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(valueIS, &values)); 2549566063dSJacob Faibussowitsch PetscCall(ISDestroy(&valueIS)); 2556cf0e42fSMatthew G. Knepley PetscFunctionReturn(0); 2566cf0e42fSMatthew G. Knepley } 2576cf0e42fSMatthew G. Knepley 258f402d5e4SToby Isaac /*@ 259a6e0b375SMatthew G. Knepley DMPlexLabelAddFaceCells - Starting with a label marking faces on a surface, we add a cell for each face 260a6e0b375SMatthew G. Knepley 261a6e0b375SMatthew G. Knepley Input Parameters: 262a6e0b375SMatthew G. Knepley + dm - The DM 263a6e0b375SMatthew G. Knepley - label - A DMLabel marking the surface points 264a6e0b375SMatthew G. Knepley 265a6e0b375SMatthew G. Knepley Output Parameter: 266a6e0b375SMatthew G. Knepley . label - A DMLabel incorporating cells 267a6e0b375SMatthew G. Knepley 268a6e0b375SMatthew G. Knepley Level: developer 269a6e0b375SMatthew G. Knepley 270a6e0b375SMatthew G. Knepley Note: The cells allow FEM boundary conditions to be applied using the cell geometry 271a6e0b375SMatthew G. Knepley 272a6e0b375SMatthew G. Knepley .seealso: DMPlexLabelAddCells(), DMPlexLabelComplete(), DMPlexLabelCohesiveComplete() 273a6e0b375SMatthew G. Knepley @*/ 274a6e0b375SMatthew G. Knepley PetscErrorCode DMPlexLabelAddFaceCells(DM dm, DMLabel label) 275a6e0b375SMatthew G. Knepley { 276a6e0b375SMatthew G. Knepley IS valueIS; 277a6e0b375SMatthew G. Knepley const PetscInt *values; 278a6e0b375SMatthew G. Knepley PetscInt numValues, v, cStart, cEnd, fStart, fEnd; 279a6e0b375SMatthew G. Knepley 280a6e0b375SMatthew G. Knepley PetscFunctionBegin; 2819566063dSJacob Faibussowitsch PetscCall(DMPlexGetSimplexOrBoxCells(dm, 0, &cStart, &cEnd)); 2829566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(dm, 1, &fStart, &fEnd)); 2839566063dSJacob Faibussowitsch PetscCall(DMLabelGetNumValues(label, &numValues)); 2849566063dSJacob Faibussowitsch PetscCall(DMLabelGetValueIS(label, &valueIS)); 2859566063dSJacob Faibussowitsch PetscCall(ISGetIndices(valueIS, &values)); 286a6e0b375SMatthew G. Knepley for (v = 0; v < numValues; ++v) { 287a6e0b375SMatthew G. Knepley IS pointIS; 288a6e0b375SMatthew G. Knepley const PetscInt *points; 289a6e0b375SMatthew G. Knepley PetscInt numPoints, p; 290a6e0b375SMatthew G. Knepley 2919566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumSize(label, values[v], &numPoints)); 2929566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(label, values[v], &pointIS)); 2939566063dSJacob Faibussowitsch PetscCall(ISGetIndices(pointIS, &points)); 294a6e0b375SMatthew G. Knepley for (p = 0; p < numPoints; ++p) { 295a6e0b375SMatthew G. Knepley const PetscInt face = points[p]; 296a6e0b375SMatthew G. Knepley PetscInt *closure = NULL; 297a6e0b375SMatthew G. Knepley PetscInt closureSize, cl; 298a6e0b375SMatthew G. Knepley 299a6e0b375SMatthew G. Knepley if ((face < fStart) || (face >= fEnd)) continue; 3009566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(dm, face, PETSC_FALSE, &closureSize, &closure)); 301a6e0b375SMatthew G. Knepley for (cl = closureSize-1; cl > 0; --cl) { 302a6e0b375SMatthew G. Knepley const PetscInt cell = closure[cl*2]; 3039566063dSJacob Faibussowitsch if ((cell >= cStart) && (cell < cEnd)) {PetscCall(DMLabelSetValue(label, cell, values[v])); break;} 304a6e0b375SMatthew G. Knepley } 3059566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dm, face, PETSC_FALSE, &closureSize, &closure)); 306a6e0b375SMatthew G. Knepley } 3079566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(pointIS, &points)); 3089566063dSJacob Faibussowitsch PetscCall(ISDestroy(&pointIS)); 309a6e0b375SMatthew G. Knepley } 3109566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(valueIS, &values)); 3119566063dSJacob Faibussowitsch PetscCall(ISDestroy(&valueIS)); 312a6e0b375SMatthew G. Knepley PetscFunctionReturn(0); 313a6e0b375SMatthew G. Knepley } 314a6e0b375SMatthew G. Knepley 315a6e0b375SMatthew G. Knepley /*@ 316f402d5e4SToby Isaac DMPlexLabelClearCells - Remove cells from a label 317f402d5e4SToby Isaac 318f402d5e4SToby Isaac Input Parameters: 319f402d5e4SToby Isaac + dm - The DM 320f402d5e4SToby Isaac - label - A DMLabel marking surface points and their adjacent cells 321f402d5e4SToby Isaac 322f402d5e4SToby Isaac Output Parameter: 323f402d5e4SToby Isaac . label - A DMLabel without cells 324f402d5e4SToby Isaac 325f402d5e4SToby Isaac Level: developer 326f402d5e4SToby Isaac 327a6e0b375SMatthew G. Knepley Note: This undoes DMPlexLabelAddCells() or DMPlexLabelAddFaceCells() 328f402d5e4SToby Isaac 329f402d5e4SToby Isaac .seealso: DMPlexLabelComplete(), DMPlexLabelCohesiveComplete(), DMPlexLabelAddCells() 330f402d5e4SToby Isaac @*/ 331f402d5e4SToby Isaac PetscErrorCode DMPlexLabelClearCells(DM dm, DMLabel label) 332f402d5e4SToby Isaac { 333f402d5e4SToby Isaac IS valueIS; 334f402d5e4SToby Isaac const PetscInt *values; 335485ad865SMatthew G. Knepley PetscInt numValues, v, cStart, cEnd; 336f402d5e4SToby Isaac 337f402d5e4SToby Isaac PetscFunctionBegin; 3389566063dSJacob Faibussowitsch PetscCall(DMPlexGetSimplexOrBoxCells(dm, 0, &cStart, &cEnd)); 3399566063dSJacob Faibussowitsch PetscCall(DMLabelGetNumValues(label, &numValues)); 3409566063dSJacob Faibussowitsch PetscCall(DMLabelGetValueIS(label, &valueIS)); 3419566063dSJacob Faibussowitsch PetscCall(ISGetIndices(valueIS, &values)); 342f402d5e4SToby Isaac for (v = 0; v < numValues; ++v) { 343f402d5e4SToby Isaac IS pointIS; 344f402d5e4SToby Isaac const PetscInt *points; 345f402d5e4SToby Isaac PetscInt numPoints, p; 346f402d5e4SToby Isaac 3479566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumSize(label, values[v], &numPoints)); 3489566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(label, values[v], &pointIS)); 3499566063dSJacob Faibussowitsch PetscCall(ISGetIndices(pointIS, &points)); 350f402d5e4SToby Isaac for (p = 0; p < numPoints; ++p) { 351f402d5e4SToby Isaac PetscInt point = points[p]; 352f402d5e4SToby Isaac 353f402d5e4SToby Isaac if (point >= cStart && point < cEnd) { 3549566063dSJacob Faibussowitsch PetscCall(DMLabelClearValue(label,point,values[v])); 355f402d5e4SToby Isaac } 356f402d5e4SToby Isaac } 3579566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(pointIS, &points)); 3589566063dSJacob Faibussowitsch PetscCall(ISDestroy(&pointIS)); 359f402d5e4SToby Isaac } 3609566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(valueIS, &values)); 3619566063dSJacob Faibussowitsch PetscCall(ISDestroy(&valueIS)); 362f402d5e4SToby Isaac PetscFunctionReturn(0); 363f402d5e4SToby Isaac } 364f402d5e4SToby Isaac 36559eef20bSToby Isaac /* take (oldEnd, added) pairs, ordered by height and convert them to (oldstart, newstart) pairs, ordered by ascending 36659eef20bSToby Isaac * index (skipping first, which is (0,0)) */ 3679fbee547SJacob Faibussowitsch static inline PetscErrorCode DMPlexShiftPointSetUp_Internal(PetscInt depth, PetscInt depthShift[]) 368cd0c2139SMatthew G Knepley { 3692582d50cSToby Isaac PetscInt d, off = 0; 3702582d50cSToby Isaac 3712582d50cSToby Isaac PetscFunctionBegin; 37259eef20bSToby Isaac /* sort by (oldend): yes this is an O(n^2) sort, we expect depth <= 3 */ 3730974a383SToby Isaac for (d = 0; d < depth; d++) { 3742582d50cSToby Isaac PetscInt firstd = d; 3750974a383SToby Isaac PetscInt firstStart = depthShift[2*d]; 3762582d50cSToby Isaac PetscInt e; 3772582d50cSToby Isaac 3782582d50cSToby Isaac for (e = d+1; e <= depth; e++) { 3792582d50cSToby Isaac if (depthShift[2*e] < firstStart) { 3802582d50cSToby Isaac firstd = e; 3812582d50cSToby Isaac firstStart = depthShift[2*d]; 3822582d50cSToby Isaac } 3832582d50cSToby Isaac } 3842582d50cSToby Isaac if (firstd != d) { 3852582d50cSToby Isaac PetscInt swap[2]; 3862582d50cSToby Isaac 3872582d50cSToby Isaac e = firstd; 3882582d50cSToby Isaac swap[0] = depthShift[2*d]; 3892582d50cSToby Isaac swap[1] = depthShift[2*d+1]; 3902582d50cSToby Isaac depthShift[2*d] = depthShift[2*e]; 3912582d50cSToby Isaac depthShift[2*d+1] = depthShift[2*e+1]; 3922582d50cSToby Isaac depthShift[2*e] = swap[0]; 3932582d50cSToby Isaac depthShift[2*e+1] = swap[1]; 3942582d50cSToby Isaac } 3952582d50cSToby Isaac } 3962582d50cSToby Isaac /* convert (oldstart, added) to (oldstart, newstart) */ 3970974a383SToby Isaac for (d = 0; d <= depth; d++) { 3982582d50cSToby Isaac off += depthShift[2*d+1]; 39959eef20bSToby Isaac depthShift[2*d+1] = depthShift[2*d] + off; 4002582d50cSToby Isaac } 4012582d50cSToby Isaac PetscFunctionReturn(0); 4022582d50cSToby Isaac } 4032582d50cSToby Isaac 4042582d50cSToby Isaac /* depthShift is a list of (old, new) pairs */ 4059fbee547SJacob Faibussowitsch static inline PetscInt DMPlexShiftPoint_Internal(PetscInt p, PetscInt depth, PetscInt depthShift[]) 4062582d50cSToby Isaac { 4072582d50cSToby Isaac PetscInt d; 4082582d50cSToby Isaac PetscInt newOff = 0; 4092582d50cSToby Isaac 4102582d50cSToby Isaac for (d = 0; d <= depth; d++) { 4112582d50cSToby Isaac if (p < depthShift[2*d]) return p + newOff; 4122582d50cSToby Isaac else newOff = depthShift[2*d+1] - depthShift[2*d]; 4132582d50cSToby Isaac } 4140974a383SToby Isaac return p + newOff; 4152582d50cSToby Isaac } 4162582d50cSToby Isaac 4172582d50cSToby Isaac /* depthShift is a list of (old, new) pairs */ 4189fbee547SJacob Faibussowitsch static inline PetscInt DMPlexShiftPointInverse_Internal(PetscInt p, PetscInt depth, PetscInt depthShift[]) 4192582d50cSToby Isaac { 4202582d50cSToby Isaac PetscInt d; 4212582d50cSToby Isaac PetscInt newOff = 0; 4222582d50cSToby Isaac 4232582d50cSToby Isaac for (d = 0; d <= depth; d++) { 4242582d50cSToby Isaac if (p < depthShift[2*d+1]) return p + newOff; 4252582d50cSToby Isaac else newOff = depthShift[2*d] - depthShift[2*d+1]; 4262582d50cSToby Isaac } 4270974a383SToby Isaac return p + newOff; 428cd0c2139SMatthew G Knepley } 429cd0c2139SMatthew G Knepley 430cd0c2139SMatthew G Knepley static PetscErrorCode DMPlexShiftSizes_Internal(DM dm, PetscInt depthShift[], DM dmNew) 431cd0c2139SMatthew G Knepley { 432cd0c2139SMatthew G Knepley PetscInt depth = 0, d, pStart, pEnd, p; 433fa8e8ae5SToby Isaac DMLabel depthLabel; 434cd0c2139SMatthew G Knepley 435cd0c2139SMatthew G Knepley PetscFunctionBegin; 4369566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepth(dm, &depth)); 437cd0c2139SMatthew G Knepley if (depth < 0) PetscFunctionReturn(0); 438cd0c2139SMatthew G Knepley /* Step 1: Expand chart */ 4399566063dSJacob Faibussowitsch PetscCall(DMPlexGetChart(dm, &pStart, &pEnd)); 4400974a383SToby Isaac pEnd = DMPlexShiftPoint_Internal(pEnd,depth,depthShift); 4419566063dSJacob Faibussowitsch PetscCall(DMPlexSetChart(dmNew, pStart, pEnd)); 4429566063dSJacob Faibussowitsch PetscCall(DMCreateLabel(dmNew,"depth")); 4439566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthLabel(dmNew,&depthLabel)); 4449566063dSJacob Faibussowitsch PetscCall(DMCreateLabel(dmNew, "celltype")); 445cd0c2139SMatthew G Knepley /* Step 2: Set cone and support sizes */ 446cd0c2139SMatthew G Knepley for (d = 0; d <= depth; ++d) { 447fa8e8ae5SToby Isaac PetscInt pStartNew, pEndNew; 448fa8e8ae5SToby Isaac IS pIS; 449fa8e8ae5SToby Isaac 4509566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthStratum(dm, d, &pStart, &pEnd)); 451fa8e8ae5SToby Isaac pStartNew = DMPlexShiftPoint_Internal(pStart, depth, depthShift); 452fa8e8ae5SToby Isaac pEndNew = DMPlexShiftPoint_Internal(pEnd, depth, depthShift); 4539566063dSJacob Faibussowitsch PetscCall(ISCreateStride(PETSC_COMM_SELF, pEndNew - pStartNew, pStartNew, 1, &pIS)); 4549566063dSJacob Faibussowitsch PetscCall(DMLabelSetStratumIS(depthLabel, d, pIS)); 4559566063dSJacob Faibussowitsch PetscCall(ISDestroy(&pIS)); 456cd0c2139SMatthew G Knepley for (p = pStart; p < pEnd; ++p) { 4572582d50cSToby Isaac PetscInt newp = DMPlexShiftPoint_Internal(p, depth, depthShift); 458cd0c2139SMatthew G Knepley PetscInt size; 459412e9a14SMatthew G. Knepley DMPolytopeType ct; 460cd0c2139SMatthew G Knepley 4619566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, p, &size)); 4629566063dSJacob Faibussowitsch PetscCall(DMPlexSetConeSize(dmNew, newp, size)); 4639566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dm, p, &size)); 4649566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupportSize(dmNew, newp, size)); 4659566063dSJacob Faibussowitsch PetscCall(DMPlexGetCellType(dm, p, &ct)); 4669566063dSJacob Faibussowitsch PetscCall(DMPlexSetCellType(dmNew, newp, ct)); 467cd0c2139SMatthew G Knepley } 468cd0c2139SMatthew G Knepley } 469cd0c2139SMatthew G Knepley PetscFunctionReturn(0); 470cd0c2139SMatthew G Knepley } 471cd0c2139SMatthew G Knepley 472cd0c2139SMatthew G Knepley static PetscErrorCode DMPlexShiftPoints_Internal(DM dm, PetscInt depthShift[], DM dmNew) 473cd0c2139SMatthew G Knepley { 4742582d50cSToby Isaac PetscInt *newpoints; 4752582d50cSToby Isaac PetscInt depth = 0, maxConeSize, maxSupportSize, maxConeSizeNew, maxSupportSizeNew, pStart, pEnd, p; 476cd0c2139SMatthew G Knepley 477cd0c2139SMatthew G Knepley PetscFunctionBegin; 4789566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepth(dm, &depth)); 479cd0c2139SMatthew G Knepley if (depth < 0) PetscFunctionReturn(0); 4809566063dSJacob Faibussowitsch PetscCall(DMPlexGetMaxSizes(dm, &maxConeSize, &maxSupportSize)); 4819566063dSJacob Faibussowitsch PetscCall(DMPlexGetMaxSizes(dmNew, &maxConeSizeNew, &maxSupportSizeNew)); 4829566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(PetscMax(PetscMax(maxConeSize, maxSupportSize), PetscMax(maxConeSizeNew, maxSupportSizeNew)),&newpoints)); 483cd0c2139SMatthew G Knepley /* Step 5: Set cones and supports */ 4849566063dSJacob Faibussowitsch PetscCall(DMPlexGetChart(dm, &pStart, &pEnd)); 485cd0c2139SMatthew G Knepley for (p = pStart; p < pEnd; ++p) { 486cd0c2139SMatthew G Knepley const PetscInt *points = NULL, *orientations = NULL; 4872582d50cSToby Isaac PetscInt size,sizeNew, i, newp = DMPlexShiftPoint_Internal(p, depth, depthShift); 488cd0c2139SMatthew G Knepley 4899566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, p, &size)); 4909566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, p, &points)); 4919566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeOrientation(dm, p, &orientations)); 492cd0c2139SMatthew G Knepley for (i = 0; i < size; ++i) { 4932582d50cSToby Isaac newpoints[i] = DMPlexShiftPoint_Internal(points[i], depth, depthShift); 494cd0c2139SMatthew G Knepley } 4959566063dSJacob Faibussowitsch PetscCall(DMPlexSetCone(dmNew, newp, newpoints)); 4969566063dSJacob Faibussowitsch PetscCall(DMPlexSetConeOrientation(dmNew, newp, orientations)); 4979566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dm, p, &size)); 4989566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dmNew, newp, &sizeNew)); 4999566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(dm, p, &points)); 500cd0c2139SMatthew G Knepley for (i = 0; i < size; ++i) { 5012582d50cSToby Isaac newpoints[i] = DMPlexShiftPoint_Internal(points[i], depth, depthShift); 502cd0c2139SMatthew G Knepley } 503dcbb62e8SMatthew G. Knepley for (i = size; i < sizeNew; ++i) newpoints[i] = 0; 5049566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupport(dmNew, newp, newpoints)); 505cd0c2139SMatthew G Knepley } 5069566063dSJacob Faibussowitsch PetscCall(PetscFree(newpoints)); 507cd0c2139SMatthew G Knepley PetscFunctionReturn(0); 508cd0c2139SMatthew G Knepley } 509cd0c2139SMatthew G Knepley 510cd0c2139SMatthew G Knepley static PetscErrorCode DMPlexShiftCoordinates_Internal(DM dm, PetscInt depthShift[], DM dmNew) 511cd0c2139SMatthew G Knepley { 512cd0c2139SMatthew G Knepley PetscSection coordSection, newCoordSection; 513cd0c2139SMatthew G Knepley Vec coordinates, newCoordinates; 514cd0c2139SMatthew G Knepley PetscScalar *coords, *newCoords; 515f2b8cce1SMatthew G. Knepley PetscInt coordSize, sStart, sEnd; 516f2b8cce1SMatthew G. Knepley PetscInt dim, depth = 0, cStart, cEnd, cStartNew, cEndNew, c, vStart, vEnd, vStartNew, vEndNew, v; 517f2b8cce1SMatthew G. Knepley PetscBool hasCells; 518cd0c2139SMatthew G Knepley 519cd0c2139SMatthew G Knepley PetscFunctionBegin; 5209566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDim(dm, &dim)); 5219566063dSJacob Faibussowitsch PetscCall(DMSetCoordinateDim(dmNew, dim)); 5229566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepth(dm, &depth)); 523cd0c2139SMatthew G Knepley /* Step 8: Convert coordinates */ 5249566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthStratum(dm, 0, &vStart, &vEnd)); 5259566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(dm, 0, &cStart, &cEnd)); 5269566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthStratum(dmNew, 0, &vStartNew, &vEndNew)); 5279566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(dmNew, 0, &cStartNew, &cEndNew)); 5289566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateSection(dm, &coordSection)); 5299566063dSJacob Faibussowitsch PetscCall(PetscSectionCreate(PetscObjectComm((PetscObject)dm), &newCoordSection)); 5309566063dSJacob Faibussowitsch PetscCall(PetscSectionSetNumFields(newCoordSection, 1)); 5319566063dSJacob Faibussowitsch PetscCall(PetscSectionSetFieldComponents(newCoordSection, 0, dim)); 5329566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(coordSection, &sStart, &sEnd)); 533f2b8cce1SMatthew G. Knepley hasCells = sStart == cStart ? PETSC_TRUE : PETSC_FALSE; 5349566063dSJacob Faibussowitsch PetscCall(PetscSectionSetChart(newCoordSection, hasCells ? cStartNew : vStartNew, vEndNew)); 535f2b8cce1SMatthew G. Knepley if (hasCells) { 536f2b8cce1SMatthew G. Knepley for (c = cStart; c < cEnd; ++c) { 537f2b8cce1SMatthew G. Knepley PetscInt cNew = DMPlexShiftPoint_Internal(c, depth, depthShift), dof; 538f2b8cce1SMatthew G. Knepley 5399566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(coordSection, c, &dof)); 5409566063dSJacob Faibussowitsch PetscCall(PetscSectionSetDof(newCoordSection, cNew, dof)); 5419566063dSJacob Faibussowitsch PetscCall(PetscSectionSetFieldDof(newCoordSection, cNew, 0, dof)); 542f2b8cce1SMatthew G. Knepley } 543f2b8cce1SMatthew G. Knepley } 544cd0c2139SMatthew G Knepley for (v = vStartNew; v < vEndNew; ++v) { 5459566063dSJacob Faibussowitsch PetscCall(PetscSectionSetDof(newCoordSection, v, dim)); 5469566063dSJacob Faibussowitsch PetscCall(PetscSectionSetFieldDof(newCoordSection, v, 0, dim)); 547cd0c2139SMatthew G Knepley } 5489566063dSJacob Faibussowitsch PetscCall(PetscSectionSetUp(newCoordSection)); 5499566063dSJacob Faibussowitsch PetscCall(DMSetCoordinateSection(dmNew, PETSC_DETERMINE, newCoordSection)); 5509566063dSJacob Faibussowitsch PetscCall(PetscSectionGetStorageSize(newCoordSection, &coordSize)); 5519566063dSJacob Faibussowitsch PetscCall(VecCreate(PETSC_COMM_SELF, &newCoordinates)); 5529566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject) newCoordinates, "coordinates")); 5539566063dSJacob Faibussowitsch PetscCall(VecSetSizes(newCoordinates, coordSize, PETSC_DETERMINE)); 5549566063dSJacob Faibussowitsch PetscCall(VecSetBlockSize(newCoordinates, dim)); 5559566063dSJacob Faibussowitsch PetscCall(VecSetType(newCoordinates,VECSTANDARD)); 5569566063dSJacob Faibussowitsch PetscCall(DMSetCoordinatesLocal(dmNew, newCoordinates)); 5579566063dSJacob Faibussowitsch PetscCall(DMGetCoordinatesLocal(dm, &coordinates)); 5589566063dSJacob Faibussowitsch PetscCall(VecGetArray(coordinates, &coords)); 5599566063dSJacob Faibussowitsch PetscCall(VecGetArray(newCoordinates, &newCoords)); 560f2b8cce1SMatthew G. Knepley if (hasCells) { 561f2b8cce1SMatthew G. Knepley for (c = cStart; c < cEnd; ++c) { 562f2b8cce1SMatthew G. Knepley PetscInt cNew = DMPlexShiftPoint_Internal(c, depth, depthShift), dof, off, noff, d; 563f2b8cce1SMatthew G. Knepley 5649566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(coordSection, c, &dof)); 5659566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(coordSection, c, &off)); 5669566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(newCoordSection, cNew, &noff)); 567f2b8cce1SMatthew G. Knepley for (d = 0; d < dof; ++d) newCoords[noff+d] = coords[off+d]; 568f2b8cce1SMatthew G. Knepley } 569f2b8cce1SMatthew G. Knepley } 570cd0c2139SMatthew G Knepley for (v = vStart; v < vEnd; ++v) { 571cd0c2139SMatthew G Knepley PetscInt dof, off, noff, d; 572cd0c2139SMatthew G Knepley 5739566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(coordSection, v, &dof)); 5749566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(coordSection, v, &off)); 5759566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(newCoordSection, DMPlexShiftPoint_Internal(v, depth, depthShift), &noff)); 576f2b8cce1SMatthew G. Knepley for (d = 0; d < dof; ++d) newCoords[noff+d] = coords[off+d]; 577cd0c2139SMatthew G Knepley } 5789566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(coordinates, &coords)); 5799566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(newCoordinates, &newCoords)); 5809566063dSJacob Faibussowitsch PetscCall(VecDestroy(&newCoordinates)); 5819566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&newCoordSection)); 582cd0c2139SMatthew G Knepley PetscFunctionReturn(0); 583cd0c2139SMatthew G Knepley } 584cd0c2139SMatthew G Knepley 5850e33faafSMatthew G. Knepley static PetscErrorCode DMPlexShiftSF_Single(DM dm, PetscInt depthShift[], PetscSF sf, PetscSF sfNew) 586cd0c2139SMatthew G Knepley { 587cd0c2139SMatthew G Knepley const PetscSFNode *remotePoints; 588cd0c2139SMatthew G Knepley PetscSFNode *gremotePoints; 589cd0c2139SMatthew G Knepley const PetscInt *localPoints; 590cd0c2139SMatthew G Knepley PetscInt *glocalPoints, *newLocation, *newRemoteLocation; 5910e33faafSMatthew G. Knepley PetscInt numRoots, numLeaves, l, pStart, pEnd, depth = 0, totShift = 0; 592cd0c2139SMatthew G Knepley 593cd0c2139SMatthew G Knepley PetscFunctionBegin; 5949566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepth(dm, &depth)); 5959566063dSJacob Faibussowitsch PetscCall(DMPlexGetChart(dm, &pStart, &pEnd)); 5969566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(sf, &numRoots, &numLeaves, &localPoints, &remotePoints)); 5976e21efdcSToby Isaac totShift = DMPlexShiftPoint_Internal(pEnd, depth, depthShift) - pEnd; 598cd0c2139SMatthew G Knepley if (numRoots >= 0) { 5999566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(numRoots, &newLocation, pEnd-pStart, &newRemoteLocation)); 6000e33faafSMatthew G. Knepley for (l = 0; l < numRoots; ++l) newLocation[l] = DMPlexShiftPoint_Internal(l, depth, depthShift); 6019566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(sf, MPIU_INT, newLocation, newRemoteLocation, MPI_REPLACE)); 6029566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(sf, MPIU_INT, newLocation, newRemoteLocation, MPI_REPLACE)); 6039566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(numLeaves, &glocalPoints)); 6049566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(numLeaves, &gremotePoints)); 605cd0c2139SMatthew G Knepley for (l = 0; l < numLeaves; ++l) { 6062582d50cSToby Isaac glocalPoints[l] = DMPlexShiftPoint_Internal(localPoints[l], depth, depthShift); 607cd0c2139SMatthew G Knepley gremotePoints[l].rank = remotePoints[l].rank; 608cd0c2139SMatthew G Knepley gremotePoints[l].index = newRemoteLocation[localPoints[l]]; 609cd0c2139SMatthew G Knepley } 6109566063dSJacob Faibussowitsch PetscCall(PetscFree2(newLocation, newRemoteLocation)); 6119566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(sfNew, numRoots + totShift, numLeaves, glocalPoints, PETSC_OWN_POINTER, gremotePoints, PETSC_OWN_POINTER)); 6120e33faafSMatthew G. Knepley } 6130e33faafSMatthew G. Knepley PetscFunctionReturn(0); 6140e33faafSMatthew G. Knepley } 6150e33faafSMatthew G. Knepley 6160e33faafSMatthew G. Knepley static PetscErrorCode DMPlexShiftSF_Internal(DM dm, PetscInt depthShift[], DM dmNew) 6170e33faafSMatthew G. Knepley { 6180e33faafSMatthew G. Knepley PetscSF sfPoint, sfPointNew; 6190e33faafSMatthew G. Knepley PetscBool useNatural; 6200e33faafSMatthew G. Knepley 6210e33faafSMatthew G. Knepley PetscFunctionBegin; 6220e33faafSMatthew G. Knepley /* Step 9: Convert pointSF */ 6239566063dSJacob Faibussowitsch PetscCall(DMGetPointSF(dm, &sfPoint)); 6249566063dSJacob Faibussowitsch PetscCall(DMGetPointSF(dmNew, &sfPointNew)); 6259566063dSJacob Faibussowitsch PetscCall(DMPlexShiftSF_Single(dm, depthShift, sfPoint, sfPointNew)); 6260e33faafSMatthew G. Knepley /* Step 9b: Convert naturalSF */ 6279566063dSJacob Faibussowitsch PetscCall(DMGetUseNatural(dm, &useNatural)); 6280e33faafSMatthew G. Knepley if (useNatural) { 6290e33faafSMatthew G. Knepley PetscSF sfNat, sfNatNew; 6300e33faafSMatthew G. Knepley 6319566063dSJacob Faibussowitsch PetscCall(DMSetUseNatural(dmNew, useNatural)); 6329566063dSJacob Faibussowitsch PetscCall(DMGetNaturalSF(dm, &sfNat)); 6339566063dSJacob Faibussowitsch PetscCall(DMGetNaturalSF(dmNew, &sfNatNew)); 6349566063dSJacob Faibussowitsch PetscCall(DMPlexShiftSF_Single(dm, depthShift, sfNat, sfNatNew)); 635cd0c2139SMatthew G Knepley } 636cd0c2139SMatthew G Knepley PetscFunctionReturn(0); 637cd0c2139SMatthew G Knepley } 638cd0c2139SMatthew G Knepley 639cd0c2139SMatthew G Knepley static PetscErrorCode DMPlexShiftLabels_Internal(DM dm, PetscInt depthShift[], DM dmNew) 640cd0c2139SMatthew G Knepley { 641d56405f8SMatthew G. Knepley PetscInt depth = 0, numLabels, l; 642cd0c2139SMatthew G Knepley 643cd0c2139SMatthew G Knepley PetscFunctionBegin; 6449566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepth(dm, &depth)); 645cd0c2139SMatthew G Knepley /* Step 10: Convert labels */ 6469566063dSJacob Faibussowitsch PetscCall(DMGetNumLabels(dm, &numLabels)); 647cd0c2139SMatthew G Knepley for (l = 0; l < numLabels; ++l) { 648cd0c2139SMatthew G Knepley DMLabel label, newlabel; 649cd0c2139SMatthew G Knepley const char *lname; 650fa8e8ae5SToby Isaac PetscBool isDepth, isDim; 651cd0c2139SMatthew G Knepley IS valueIS; 652cd0c2139SMatthew G Knepley const PetscInt *values; 653cd0c2139SMatthew G Knepley PetscInt numValues, val; 654cd0c2139SMatthew G Knepley 6559566063dSJacob Faibussowitsch PetscCall(DMGetLabelName(dm, l, &lname)); 6569566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(lname, "depth", &isDepth)); 657cd0c2139SMatthew G Knepley if (isDepth) continue; 6589566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(lname, "dim", &isDim)); 659fa8e8ae5SToby Isaac if (isDim) continue; 6609566063dSJacob Faibussowitsch PetscCall(DMCreateLabel(dmNew, lname)); 6619566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, lname, &label)); 6629566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dmNew, lname, &newlabel)); 6639566063dSJacob Faibussowitsch PetscCall(DMLabelGetDefaultValue(label,&val)); 6649566063dSJacob Faibussowitsch PetscCall(DMLabelSetDefaultValue(newlabel,val)); 6659566063dSJacob Faibussowitsch PetscCall(DMLabelGetValueIS(label, &valueIS)); 6669566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(valueIS, &numValues)); 6679566063dSJacob Faibussowitsch PetscCall(ISGetIndices(valueIS, &values)); 668cd0c2139SMatthew G Knepley for (val = 0; val < numValues; ++val) { 669cd0c2139SMatthew G Knepley IS pointIS; 670cd0c2139SMatthew G Knepley const PetscInt *points; 671cd0c2139SMatthew G Knepley PetscInt numPoints, p; 672cd0c2139SMatthew G Knepley 6739566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(label, values[val], &pointIS)); 6749566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(pointIS, &numPoints)); 6759566063dSJacob Faibussowitsch PetscCall(ISGetIndices(pointIS, &points)); 676cd0c2139SMatthew G Knepley for (p = 0; p < numPoints; ++p) { 6772582d50cSToby Isaac const PetscInt newpoint = DMPlexShiftPoint_Internal(points[p], depth, depthShift); 678cd0c2139SMatthew G Knepley 6799566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(newlabel, newpoint, values[val])); 680cd0c2139SMatthew G Knepley } 6819566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(pointIS, &points)); 6829566063dSJacob Faibussowitsch PetscCall(ISDestroy(&pointIS)); 683cd0c2139SMatthew G Knepley } 6849566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(valueIS, &values)); 6859566063dSJacob Faibussowitsch PetscCall(ISDestroy(&valueIS)); 686cd0c2139SMatthew G Knepley } 687d56405f8SMatthew G. Knepley PetscFunctionReturn(0); 688d56405f8SMatthew G. Knepley } 689d56405f8SMatthew G. Knepley 690d56405f8SMatthew G. Knepley static PetscErrorCode DMPlexCreateVTKLabel_Internal(DM dm, PetscBool createGhostLabel, DM dmNew) 691d56405f8SMatthew G. Knepley { 692d56405f8SMatthew G. Knepley PetscSF sfPoint; 693d56405f8SMatthew G. Knepley DMLabel vtkLabel, ghostLabel = NULL; 694d56405f8SMatthew G. Knepley const PetscSFNode *leafRemote; 695d56405f8SMatthew G. Knepley const PetscInt *leafLocal; 696d56405f8SMatthew G. Knepley PetscInt cellHeight, cStart, cEnd, c, fStart, fEnd, f, numLeaves, l; 697d56405f8SMatthew G. Knepley PetscMPIInt rank; 698d56405f8SMatthew G. Knepley 699d56405f8SMatthew G. Knepley PetscFunctionBegin; 700cd0c2139SMatthew G Knepley /* Step 11: Make label for output (vtk) and to mark ghost points (ghost) */ 7019566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)dm), &rank)); 7029566063dSJacob Faibussowitsch PetscCall(DMGetPointSF(dm, &sfPoint)); 7039566063dSJacob Faibussowitsch PetscCall(DMPlexGetVTKCellHeight(dmNew, &cellHeight)); 7049566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(dm, cellHeight, &cStart, &cEnd)); 7059566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(sfPoint, NULL, &numLeaves, &leafLocal, &leafRemote)); 7069566063dSJacob Faibussowitsch PetscCall(DMCreateLabel(dmNew, "vtk")); 7079566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dmNew, "vtk", &vtkLabel)); 708d56405f8SMatthew G. Knepley if (createGhostLabel) { 7099566063dSJacob Faibussowitsch PetscCall(DMCreateLabel(dmNew, "ghost")); 7109566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dmNew, "ghost", &ghostLabel)); 711d56405f8SMatthew G. Knepley } 712cd0c2139SMatthew G Knepley for (l = 0, c = cStart; l < numLeaves && c < cEnd; ++l, ++c) { 713cd0c2139SMatthew G Knepley for (; c < leafLocal[l] && c < cEnd; ++c) { 7149566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(vtkLabel, c, 1)); 715cd0c2139SMatthew G Knepley } 716cd0c2139SMatthew G Knepley if (leafLocal[l] >= cEnd) break; 717cd0c2139SMatthew G Knepley if (leafRemote[l].rank == rank) { 7189566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(vtkLabel, c, 1)); 719d56405f8SMatthew G. Knepley } else if (ghostLabel) { 7209566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(ghostLabel, c, 2)); 721cd0c2139SMatthew G Knepley } 722cd0c2139SMatthew G Knepley } 723cd0c2139SMatthew G Knepley for (; c < cEnd; ++c) { 7249566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(vtkLabel, c, 1)); 725cd0c2139SMatthew G Knepley } 726d56405f8SMatthew G. Knepley if (ghostLabel) { 7279566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(dmNew, 1, &fStart, &fEnd)); 728cd0c2139SMatthew G Knepley for (f = fStart; f < fEnd; ++f) { 729cd0c2139SMatthew G Knepley PetscInt numCells; 730cd0c2139SMatthew G Knepley 7319566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dmNew, f, &numCells)); 732cd0c2139SMatthew G Knepley if (numCells < 2) { 7339566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(ghostLabel, f, 1)); 734cd0c2139SMatthew G Knepley } else { 735cd0c2139SMatthew G Knepley const PetscInt *cells = NULL; 736cd0c2139SMatthew G Knepley PetscInt vA, vB; 737cd0c2139SMatthew G Knepley 7389566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(dmNew, f, &cells)); 7399566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(vtkLabel, cells[0], &vA)); 7409566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(vtkLabel, cells[1], &vB)); 7419566063dSJacob Faibussowitsch if (vA != 1 && vB != 1) PetscCall(DMLabelSetValue(ghostLabel, f, 1)); 742cd0c2139SMatthew G Knepley } 743cd0c2139SMatthew G Knepley } 744d56405f8SMatthew G. Knepley } 745cd0c2139SMatthew G Knepley PetscFunctionReturn(0); 746cd0c2139SMatthew G Knepley } 747cd0c2139SMatthew G Knepley 748ca04dac2SToby Isaac static PetscErrorCode DMPlexShiftTree_Internal(DM dm, PetscInt depthShift[], DM dmNew) 749ca04dac2SToby Isaac { 750ca04dac2SToby Isaac DM refTree; 751ca04dac2SToby Isaac PetscSection pSec; 752ca04dac2SToby Isaac PetscInt *parents, *childIDs; 753ca04dac2SToby Isaac 754ca04dac2SToby Isaac PetscFunctionBegin; 7559566063dSJacob Faibussowitsch PetscCall(DMPlexGetReferenceTree(dm,&refTree)); 7569566063dSJacob Faibussowitsch PetscCall(DMPlexSetReferenceTree(dmNew,refTree)); 7579566063dSJacob Faibussowitsch PetscCall(DMPlexGetTree(dm,&pSec,&parents,&childIDs,NULL,NULL)); 758ca04dac2SToby Isaac if (pSec) { 7592582d50cSToby Isaac PetscInt p, pStart, pEnd, *parentsShifted, pStartShifted, pEndShifted, depth; 760fb4630b5SToby Isaac PetscInt *childIDsShifted; 761ca04dac2SToby Isaac PetscSection pSecShifted; 762ca04dac2SToby Isaac 7639566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(pSec,&pStart,&pEnd)); 7649566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepth(dm,&depth)); 7652582d50cSToby Isaac pStartShifted = DMPlexShiftPoint_Internal(pStart,depth,depthShift); 7662582d50cSToby Isaac pEndShifted = DMPlexShiftPoint_Internal(pEnd,depth,depthShift); 7679566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(pEndShifted - pStartShifted,&parentsShifted,pEndShifted-pStartShifted,&childIDsShifted)); 7689566063dSJacob Faibussowitsch PetscCall(PetscSectionCreate(PetscObjectComm((PetscObject)dmNew),&pSecShifted)); 7699566063dSJacob Faibussowitsch PetscCall(PetscSectionSetChart(pSecShifted,pStartShifted,pEndShifted)); 770ca04dac2SToby Isaac for (p = pStartShifted; p < pEndShifted; p++) { 771fb4630b5SToby Isaac /* start off assuming no children */ 7729566063dSJacob Faibussowitsch PetscCall(PetscSectionSetDof(pSecShifted,p,0)); 773fb4630b5SToby Isaac } 774fb4630b5SToby Isaac for (p = pStart; p < pEnd; p++) { 775fb4630b5SToby Isaac PetscInt dof; 776fb4630b5SToby Isaac PetscInt pNew = DMPlexShiftPoint_Internal(p,depth,depthShift); 777ca04dac2SToby Isaac 7789566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(pSec,p,&dof)); 7799566063dSJacob Faibussowitsch PetscCall(PetscSectionSetDof(pSecShifted,pNew,dof)); 780ca04dac2SToby Isaac } 7819566063dSJacob Faibussowitsch PetscCall(PetscSectionSetUp(pSecShifted)); 782fb4630b5SToby Isaac for (p = pStart; p < pEnd; p++) { 783fb4630b5SToby Isaac PetscInt dof; 784fb4630b5SToby Isaac PetscInt pNew = DMPlexShiftPoint_Internal(p,depth,depthShift); 785fb4630b5SToby Isaac 7869566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(pSec,p,&dof)); 787fb4630b5SToby Isaac if (dof) { 788fb4630b5SToby Isaac PetscInt off, offNew; 789fb4630b5SToby Isaac 7909566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(pSec,p,&off)); 7919566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(pSecShifted,pNew,&offNew)); 792fb4630b5SToby Isaac parentsShifted[offNew] = DMPlexShiftPoint_Internal(parents[off],depth,depthShift); 793fb4630b5SToby Isaac childIDsShifted[offNew] = childIDs[off]; 794fb4630b5SToby Isaac } 795fb4630b5SToby Isaac } 7969566063dSJacob Faibussowitsch PetscCall(DMPlexSetTree(dmNew,pSecShifted,parentsShifted,childIDsShifted)); 7979566063dSJacob Faibussowitsch PetscCall(PetscFree2(parentsShifted,childIDsShifted)); 7989566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&pSecShifted)); 799ca04dac2SToby Isaac } 800ca04dac2SToby Isaac PetscFunctionReturn(0); 801ca04dac2SToby Isaac } 802ca04dac2SToby Isaac 803cd0c2139SMatthew G Knepley static PetscErrorCode DMPlexConstructGhostCells_Internal(DM dm, DMLabel label, PetscInt *numGhostCells, DM gdm) 804cd0c2139SMatthew G Knepley { 805da97024aSMatthew G. Knepley PetscSF sf; 806cd0c2139SMatthew G Knepley IS valueIS; 807da97024aSMatthew G. Knepley const PetscInt *values, *leaves; 808cd0c2139SMatthew G Knepley PetscInt *depthShift; 8092582d50cSToby Isaac PetscInt d, depth = 0, nleaves, loc, Ng, numFS, fs, fStart, fEnd, ghostCell, cEnd, c; 81090b157c4SStefano Zampini PetscBool isper; 81190b157c4SStefano Zampini const PetscReal *maxCell, *L; 81290b157c4SStefano Zampini const DMBoundaryType *bd; 813cd0c2139SMatthew G Knepley 814cd0c2139SMatthew G Knepley PetscFunctionBegin; 8159566063dSJacob Faibussowitsch PetscCall(DMGetPointSF(dm, &sf)); 8169566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(sf, NULL, &nleaves, &leaves, NULL)); 817da97024aSMatthew G. Knepley nleaves = PetscMax(0, nleaves); 8189566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(dm, 1, &fStart, &fEnd)); 819cd0c2139SMatthew G Knepley /* Count ghost cells */ 8209566063dSJacob Faibussowitsch PetscCall(DMLabelGetValueIS(label, &valueIS)); 8219566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(valueIS, &numFS)); 8229566063dSJacob Faibussowitsch PetscCall(ISGetIndices(valueIS, &values)); 8234a6cfa73SMatthew G. Knepley Ng = 0; 824cd0c2139SMatthew G Knepley for (fs = 0; fs < numFS; ++fs) { 82546c796b9SMatthew G. Knepley IS faceIS; 82646c796b9SMatthew G. Knepley const PetscInt *faces; 82746c796b9SMatthew G. Knepley PetscInt numFaces, f, numBdFaces = 0; 828cd0c2139SMatthew G Knepley 8299566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(label, values[fs], &faceIS)); 8309566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(faceIS, &numFaces)); 8319566063dSJacob Faibussowitsch PetscCall(ISGetIndices(faceIS, &faces)); 83246c796b9SMatthew G. Knepley for (f = 0; f < numFaces; ++f) { 833ca04dac2SToby Isaac PetscInt numChildren; 834ca04dac2SToby Isaac 8359566063dSJacob Faibussowitsch PetscCall(PetscFindInt(faces[f], nleaves, leaves, &loc)); 8369566063dSJacob Faibussowitsch PetscCall(DMPlexGetTreeChildren(dm,faces[f],&numChildren,NULL)); 837ca04dac2SToby Isaac /* non-local and ancestors points don't get to register ghosts */ 838ca04dac2SToby Isaac if (loc >= 0 || numChildren) continue; 83946c796b9SMatthew G. Knepley if ((faces[f] >= fStart) && (faces[f] < fEnd)) ++numBdFaces; 84046c796b9SMatthew G. Knepley } 8414a6cfa73SMatthew G. Knepley Ng += numBdFaces; 8429566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(faceIS, &faces)); 8439566063dSJacob Faibussowitsch PetscCall(ISDestroy(&faceIS)); 844cd0c2139SMatthew G Knepley } 8459566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepth(dm, &depth)); 8469566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(2*(depth+1), &depthShift)); 8472582d50cSToby Isaac for (d = 0; d <= depth; d++) { 84859eef20bSToby Isaac PetscInt dEnd; 8492582d50cSToby Isaac 8509566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthStratum(dm,d,NULL,&dEnd)); 85159eef20bSToby Isaac depthShift[2*d] = dEnd; 8522582d50cSToby Isaac depthShift[2*d+1] = 0; 8532582d50cSToby Isaac } 8542582d50cSToby Isaac if (depth >= 0) depthShift[2*depth+1] = Ng; 8559566063dSJacob Faibussowitsch PetscCall(DMPlexShiftPointSetUp_Internal(depth,depthShift)); 8569566063dSJacob Faibussowitsch PetscCall(DMPlexShiftSizes_Internal(dm, depthShift, gdm)); 857cd0c2139SMatthew G Knepley /* Step 3: Set cone/support sizes for new points */ 8589566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(dm, 0, NULL, &cEnd)); 8594a6cfa73SMatthew G. Knepley for (c = cEnd; c < cEnd + Ng; ++c) { 8609566063dSJacob Faibussowitsch PetscCall(DMPlexSetConeSize(gdm, c, 1)); 861cd0c2139SMatthew G Knepley } 862cd0c2139SMatthew G Knepley for (fs = 0; fs < numFS; ++fs) { 863cd0c2139SMatthew G Knepley IS faceIS; 864cd0c2139SMatthew G Knepley const PetscInt *faces; 865cd0c2139SMatthew G Knepley PetscInt numFaces, f; 866cd0c2139SMatthew G Knepley 8679566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(label, values[fs], &faceIS)); 8689566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(faceIS, &numFaces)); 8699566063dSJacob Faibussowitsch PetscCall(ISGetIndices(faceIS, &faces)); 870cd0c2139SMatthew G Knepley for (f = 0; f < numFaces; ++f) { 871ca04dac2SToby Isaac PetscInt size, numChildren; 872cd0c2139SMatthew G Knepley 8739566063dSJacob Faibussowitsch PetscCall(PetscFindInt(faces[f], nleaves, leaves, &loc)); 8749566063dSJacob Faibussowitsch PetscCall(DMPlexGetTreeChildren(dm,faces[f],&numChildren,NULL)); 875ca04dac2SToby Isaac if (loc >= 0 || numChildren) continue; 87646c796b9SMatthew G. Knepley if ((faces[f] < fStart) || (faces[f] >= fEnd)) continue; 8779566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dm, faces[f], &size)); 878*08401ef6SPierre Jolivet PetscCheck(size == 1,PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "DM has boundary face %d with %d support cells", faces[f], size); 8799566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupportSize(gdm, faces[f] + Ng, 2)); 880cd0c2139SMatthew G Knepley } 8819566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(faceIS, &faces)); 8829566063dSJacob Faibussowitsch PetscCall(ISDestroy(&faceIS)); 883cd0c2139SMatthew G Knepley } 884cd0c2139SMatthew G Knepley /* Step 4: Setup ghosted DM */ 8859566063dSJacob Faibussowitsch PetscCall(DMSetUp(gdm)); 8869566063dSJacob Faibussowitsch PetscCall(DMPlexShiftPoints_Internal(dm, depthShift, gdm)); 887cd0c2139SMatthew G Knepley /* Step 6: Set cones and supports for new points */ 888cd0c2139SMatthew G Knepley ghostCell = cEnd; 889cd0c2139SMatthew G Knepley for (fs = 0; fs < numFS; ++fs) { 890cd0c2139SMatthew G Knepley IS faceIS; 891cd0c2139SMatthew G Knepley const PetscInt *faces; 892cd0c2139SMatthew G Knepley PetscInt numFaces, f; 893cd0c2139SMatthew G Knepley 8949566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(label, values[fs], &faceIS)); 8959566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(faceIS, &numFaces)); 8969566063dSJacob Faibussowitsch PetscCall(ISGetIndices(faceIS, &faces)); 89746c796b9SMatthew G. Knepley for (f = 0; f < numFaces; ++f) { 898ca04dac2SToby Isaac PetscInt newFace = faces[f] + Ng, numChildren; 899cd0c2139SMatthew G Knepley 9009566063dSJacob Faibussowitsch PetscCall(PetscFindInt(faces[f], nleaves, leaves, &loc)); 9019566063dSJacob Faibussowitsch PetscCall(DMPlexGetTreeChildren(dm,faces[f],&numChildren,NULL)); 902ca04dac2SToby Isaac if (loc >= 0 || numChildren) continue; 90346c796b9SMatthew G. Knepley if ((faces[f] < fStart) || (faces[f] >= fEnd)) continue; 9049566063dSJacob Faibussowitsch PetscCall(DMPlexSetCone(gdm, ghostCell, &newFace)); 9059566063dSJacob Faibussowitsch PetscCall(DMPlexInsertSupport(gdm, newFace, 1, ghostCell)); 90646c796b9SMatthew G. Knepley ++ghostCell; 907cd0c2139SMatthew G Knepley } 9089566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(faceIS, &faces)); 9099566063dSJacob Faibussowitsch PetscCall(ISDestroy(&faceIS)); 910cd0c2139SMatthew G Knepley } 9119566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(valueIS, &values)); 9129566063dSJacob Faibussowitsch PetscCall(ISDestroy(&valueIS)); 9139566063dSJacob Faibussowitsch PetscCall(DMPlexShiftCoordinates_Internal(dm, depthShift, gdm)); 9149566063dSJacob Faibussowitsch PetscCall(DMPlexShiftSF_Internal(dm, depthShift, gdm)); 9159566063dSJacob Faibussowitsch PetscCall(DMPlexShiftLabels_Internal(dm, depthShift, gdm)); 9169566063dSJacob Faibussowitsch PetscCall(DMPlexCreateVTKLabel_Internal(dm, PETSC_TRUE, gdm)); 9179566063dSJacob Faibussowitsch PetscCall(DMPlexShiftTree_Internal(dm, depthShift, gdm)); 9189566063dSJacob Faibussowitsch PetscCall(PetscFree(depthShift)); 919412e9a14SMatthew G. Knepley for (c = cEnd; c < cEnd + Ng; ++c) { 9209566063dSJacob Faibussowitsch PetscCall(DMPlexSetCellType(gdm, c, DM_POLYTOPE_FV_GHOST)); 921412e9a14SMatthew G. Knepley } 922966c7b3fSMatthew G. Knepley /* Step 7: Periodicity */ 9239566063dSJacob Faibussowitsch PetscCall(DMGetPeriodicity(dm, &isper, &maxCell, &L, &bd)); 9249566063dSJacob Faibussowitsch PetscCall(DMSetPeriodicity(gdm, isper, maxCell, L, bd)); 9254a6cfa73SMatthew G. Knepley if (numGhostCells) *numGhostCells = Ng; 926cd0c2139SMatthew G Knepley PetscFunctionReturn(0); 927cd0c2139SMatthew G Knepley } 928cd0c2139SMatthew G Knepley 929cd0c2139SMatthew G Knepley /*@C 930cd0c2139SMatthew G Knepley DMPlexConstructGhostCells - Construct ghost cells which connect to every boundary face 931cd0c2139SMatthew G Knepley 932cd0c2139SMatthew G Knepley Collective on dm 933cd0c2139SMatthew G Knepley 934cd0c2139SMatthew G Knepley Input Parameters: 935cd0c2139SMatthew G Knepley + dm - The original DM 936cd0c2139SMatthew G Knepley - labelName - The label specifying the boundary faces, or "Face Sets" if this is NULL 937cd0c2139SMatthew G Knepley 938cd0c2139SMatthew G Knepley Output Parameters: 939cd0c2139SMatthew G Knepley + numGhostCells - The number of ghost cells added to the DM 940cd0c2139SMatthew G Knepley - dmGhosted - The new DM 941cd0c2139SMatthew G Knepley 942cd0c2139SMatthew G Knepley Note: If no label exists of that name, one will be created marking all boundary faces 943cd0c2139SMatthew G Knepley 944cd0c2139SMatthew G Knepley Level: developer 945cd0c2139SMatthew G Knepley 946cd0c2139SMatthew G Knepley .seealso: DMCreate() 94731266bc0SMatthew G. Knepley @*/ 948cd0c2139SMatthew G Knepley PetscErrorCode DMPlexConstructGhostCells(DM dm, const char labelName[], PetscInt *numGhostCells, DM *dmGhosted) 949cd0c2139SMatthew G Knepley { 950cd0c2139SMatthew G Knepley DM gdm; 951cd0c2139SMatthew G Knepley DMLabel label; 952cd0c2139SMatthew G Knepley const char *name = labelName ? labelName : "Face Sets"; 953412e9a14SMatthew G. Knepley PetscInt dim, Ng = 0; 954b0441da4SMatthew G. Knepley PetscBool useCone, useClosure; 955cd0c2139SMatthew G Knepley 956cd0c2139SMatthew G Knepley PetscFunctionBegin; 957cd0c2139SMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 958dadcf809SJacob Faibussowitsch if (numGhostCells) PetscValidIntPointer(numGhostCells, 3); 959cd0c2139SMatthew G Knepley PetscValidPointer(dmGhosted, 4); 9609566063dSJacob Faibussowitsch PetscCall(DMCreate(PetscObjectComm((PetscObject)dm), &gdm)); 9619566063dSJacob Faibussowitsch PetscCall(DMSetType(gdm, DMPLEX)); 9629566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 9639566063dSJacob Faibussowitsch PetscCall(DMSetDimension(gdm, dim)); 9649566063dSJacob Faibussowitsch PetscCall(DMGetBasicAdjacency(dm, &useCone, &useClosure)); 9659566063dSJacob Faibussowitsch PetscCall(DMSetBasicAdjacency(gdm, useCone, useClosure)); 9669566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, name, &label)); 967cd0c2139SMatthew G Knepley if (!label) { 968cd0c2139SMatthew G Knepley /* Get label for boundary faces */ 9699566063dSJacob Faibussowitsch PetscCall(DMCreateLabel(dm, name)); 9709566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, name, &label)); 9719566063dSJacob Faibussowitsch PetscCall(DMPlexMarkBoundaryFaces(dm, 1, label)); 972cd0c2139SMatthew G Knepley } 9739566063dSJacob Faibussowitsch PetscCall(DMPlexConstructGhostCells_Internal(dm, label, &Ng, gdm)); 9749566063dSJacob Faibussowitsch PetscCall(DMCopyDisc(dm, gdm)); 9759566063dSJacob Faibussowitsch PetscCall(DMPlexCopy_Internal(dm, PETSC_TRUE, gdm)); 976cad26855SMatthew G. Knepley gdm->setfromoptionscalled = dm->setfromoptionscalled; 977d80ece95SMatthew G. Knepley if (numGhostCells) *numGhostCells = Ng; 978cd0c2139SMatthew G Knepley *dmGhosted = gdm; 979cd0c2139SMatthew G Knepley PetscFunctionReturn(0); 980cd0c2139SMatthew G Knepley } 981cd0c2139SMatthew G Knepley 982607ab7a9SMatthew G. Knepley /* 983faedd622SMatthew G. Knepley We are adding three kinds of points here: 984607ab7a9SMatthew G. Knepley Replicated: Copies of points which exist in the mesh, such as vertices identified across a fault 985faedd622SMatthew G. Knepley Non-replicated: Points which exist on the fault, but are not replicated 986607ab7a9SMatthew G. Knepley Hybrid: Entirely new points, such as cohesive cells 987a6ae58d1SMatthew G. Knepley 988a6ae58d1SMatthew G. Knepley When creating subsequent cohesive cells, we shift the old hybrid cells to the end of the numbering at 989a6ae58d1SMatthew G. Knepley each depth so that the new split/hybrid points can be inserted as a block. 990607ab7a9SMatthew G. Knepley */ 9917db7e0a7SMatthew G. Knepley static PetscErrorCode DMPlexConstructCohesiveCells_Internal(DM dm, DMLabel label, DMLabel splitLabel, DM sdm) 992cd0c2139SMatthew G Knepley { 993cd0c2139SMatthew G Knepley MPI_Comm comm; 994607ab7a9SMatthew G. Knepley IS valueIS; 995607ab7a9SMatthew G. Knepley PetscInt numSP = 0; /* The number of depths for which we have replicated points */ 996607ab7a9SMatthew G. Knepley const PetscInt *values; /* List of depths for which we have replicated points */ 99718c5995bSMatthew G. Knepley IS *splitIS; 99818c5995bSMatthew G. Knepley IS *unsplitIS; 999607ab7a9SMatthew G. Knepley PetscInt *numSplitPoints; /* The number of replicated points at each depth */ 100018c5995bSMatthew G. Knepley PetscInt *numUnsplitPoints; /* The number of non-replicated points at each depth which still give rise to hybrid points */ 100136dbac82SMatthew G. Knepley PetscInt *numHybridPoints; /* The number of new hybrid points at each depth */ 100236dbac82SMatthew G. Knepley PetscInt *numHybridPointsOld; /* The number of existing hybrid points at each depth */ 1003607ab7a9SMatthew G. Knepley const PetscInt **splitPoints; /* Replicated points for each depth */ 100418c5995bSMatthew G. Knepley const PetscInt **unsplitPoints; /* Non-replicated points for each depth */ 1005cd0c2139SMatthew G Knepley PetscSection coordSection; 1006cd0c2139SMatthew G Knepley Vec coordinates; 1007cd0c2139SMatthew G Knepley PetscScalar *coords; 1008a6ae58d1SMatthew G. Knepley PetscInt *depthMax; /* The first hybrid point at each depth in the original mesh */ 1009a6ae58d1SMatthew G. Knepley PetscInt *depthEnd; /* The point limit at each depth in the original mesh */ 1010607ab7a9SMatthew G. Knepley PetscInt *depthShift; /* Number of replicated+hybrid points at each depth */ 1011607ab7a9SMatthew G. Knepley PetscInt *pMaxNew; /* The first replicated point at each depth in the new mesh, hybrids come after this */ 1012607ab7a9SMatthew G. Knepley PetscInt *coneNew, *coneONew, *supportNew; 101318c5995bSMatthew G. Knepley PetscInt shift = 100, shift2 = 200, depth = 0, dep, dim, d, sp, maxConeSize, maxSupportSize, maxConeSizeNew, maxSupportSizeNew, numLabels, vStart, vEnd, pEnd, p, v; 1014cd0c2139SMatthew G Knepley 1015cd0c2139SMatthew G Knepley PetscFunctionBegin; 10169566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)dm,&comm)); 10179566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 10189566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepth(dm, &depth)); 10199566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthStratum(dm, 0, &vStart, &vEnd)); 1020412e9a14SMatthew G. Knepley /* We do not want this label automatically computed, instead we compute it here */ 10219566063dSJacob Faibussowitsch PetscCall(DMCreateLabel(sdm, "celltype")); 1022cd0c2139SMatthew G Knepley /* Count split points and add cohesive cells */ 10239566063dSJacob Faibussowitsch PetscCall(DMPlexGetMaxSizes(dm, &maxConeSize, &maxSupportSize)); 10249566063dSJacob Faibussowitsch PetscCall(PetscMalloc5(depth+1,&depthMax,depth+1,&depthEnd,2*(depth+1),&depthShift,depth+1,&pMaxNew,depth+1,&numHybridPointsOld)); 10259566063dSJacob Faibussowitsch PetscCall(PetscMalloc7(depth+1,&splitIS,depth+1,&unsplitIS,depth+1,&numSplitPoints,depth+1,&numUnsplitPoints,depth+1,&numHybridPoints,depth+1,&splitPoints,depth+1,&unsplitPoints)); 1026607ab7a9SMatthew G. Knepley for (d = 0; d <= depth; ++d) { 10279566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthStratum(dm, d, NULL, &pMaxNew[d])); 10289566063dSJacob Faibussowitsch PetscCall(DMPlexGetTensorPrismBounds_Internal(dm, d, &depthMax[d], NULL)); 1029a6ae58d1SMatthew G. Knepley depthEnd[d] = pMaxNew[d]; 1030a6ae58d1SMatthew G. Knepley depthMax[d] = depthMax[d] < 0 ? depthEnd[d] : depthMax[d]; 1031607ab7a9SMatthew G. Knepley numSplitPoints[d] = 0; 103218c5995bSMatthew G. Knepley numUnsplitPoints[d] = 0; 1033607ab7a9SMatthew G. Knepley numHybridPoints[d] = 0; 1034a6ae58d1SMatthew G. Knepley numHybridPointsOld[d] = depthMax[d] < 0 ? 0 : depthEnd[d] - depthMax[d]; 1035607ab7a9SMatthew G. Knepley splitPoints[d] = NULL; 103618c5995bSMatthew G. Knepley unsplitPoints[d] = NULL; 103718c5995bSMatthew G. Knepley splitIS[d] = NULL; 103818c5995bSMatthew G. Knepley unsplitIS[d] = NULL; 103959eef20bSToby Isaac /* we are shifting the existing hybrid points with the stratum behind them, so 104059eef20bSToby Isaac * the split comes at the end of the normal points, i.e., at depthMax[d] */ 104159eef20bSToby Isaac depthShift[2*d] = depthMax[d]; 104259eef20bSToby Isaac depthShift[2*d+1] = 0; 1043607ab7a9SMatthew G. Knepley } 1044cd0c2139SMatthew G Knepley if (label) { 10459566063dSJacob Faibussowitsch PetscCall(DMLabelGetValueIS(label, &valueIS)); 10469566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(valueIS, &numSP)); 10479566063dSJacob Faibussowitsch PetscCall(ISGetIndices(valueIS, &values)); 1048cd0c2139SMatthew G Knepley } 1049cd0c2139SMatthew G Knepley for (sp = 0; sp < numSP; ++sp) { 1050cd0c2139SMatthew G Knepley const PetscInt dep = values[sp]; 1051cd0c2139SMatthew G Knepley 1052cd0c2139SMatthew G Knepley if ((dep < 0) || (dep > depth)) continue; 10539566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(label, dep, &splitIS[dep])); 105418c5995bSMatthew G. Knepley if (splitIS[dep]) { 10559566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(splitIS[dep], &numSplitPoints[dep])); 10569566063dSJacob Faibussowitsch PetscCall(ISGetIndices(splitIS[dep], &splitPoints[dep])); 105718c5995bSMatthew G. Knepley } 10589566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(label, shift2+dep, &unsplitIS[dep])); 105918c5995bSMatthew G. Knepley if (unsplitIS[dep]) { 10609566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(unsplitIS[dep], &numUnsplitPoints[dep])); 10619566063dSJacob Faibussowitsch PetscCall(ISGetIndices(unsplitIS[dep], &unsplitPoints[dep])); 1062cd0c2139SMatthew G Knepley } 1063cd0c2139SMatthew G Knepley } 1064607ab7a9SMatthew G. Knepley /* Calculate number of hybrid points */ 106518c5995bSMatthew G. Knepley for (d = 1; d <= depth; ++d) numHybridPoints[d] = numSplitPoints[d-1] + numUnsplitPoints[d-1]; /* There is a hybrid cell/face/edge for every split face/edge/vertex */ 10662582d50cSToby Isaac for (d = 0; d <= depth; ++d) depthShift[2*d+1] = numSplitPoints[d] + numHybridPoints[d]; 10679566063dSJacob Faibussowitsch PetscCall(DMPlexShiftPointSetUp_Internal(depth,depthShift)); 106859eef20bSToby Isaac /* the end of the points in this stratum that come before the new points: 106959eef20bSToby Isaac * shifting pMaxNew[d] gets the new start of the next stratum, then count back the old hybrid points and the newly 107059eef20bSToby Isaac * added points */ 10712582d50cSToby Isaac for (d = 0; d <= depth; ++d) pMaxNew[d] = DMPlexShiftPoint_Internal(pMaxNew[d],depth,depthShift) - (numHybridPointsOld[d] + numSplitPoints[d] + numHybridPoints[d]); 10729566063dSJacob Faibussowitsch PetscCall(DMPlexShiftSizes_Internal(dm, depthShift, sdm)); 1073cd0c2139SMatthew G Knepley /* Step 3: Set cone/support sizes for new points */ 1074cd0c2139SMatthew G Knepley for (dep = 0; dep <= depth; ++dep) { 1075cd0c2139SMatthew G Knepley for (p = 0; p < numSplitPoints[dep]; ++p) { 1076cd0c2139SMatthew G Knepley const PetscInt oldp = splitPoints[dep][p]; 10772582d50cSToby Isaac const PetscInt newp = DMPlexShiftPoint_Internal(oldp, depth, depthShift) /*oldp + depthOffset[dep]*/; 10784c367dbcSMatthew G. Knepley const PetscInt splitp = p + pMaxNew[dep]; 1079cd0c2139SMatthew G Knepley const PetscInt *support; 1080394c2f0fSMatthew G. Knepley DMPolytopeType ct; 10814c367dbcSMatthew G. Knepley PetscInt coneSize, supportSize, qf, qn, qp, e; 1082cd0c2139SMatthew G Knepley 10839566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, oldp, &coneSize)); 10849566063dSJacob Faibussowitsch PetscCall(DMPlexSetConeSize(sdm, splitp, coneSize)); 10859566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dm, oldp, &supportSize)); 10869566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupportSize(sdm, splitp, supportSize)); 10879566063dSJacob Faibussowitsch PetscCall(DMPlexGetCellType(dm, oldp, &ct)); 10889566063dSJacob Faibussowitsch PetscCall(DMPlexSetCellType(sdm, splitp, ct)); 1089cd0c2139SMatthew G Knepley if (dep == depth-1) { 10904c367dbcSMatthew G. Knepley const PetscInt hybcell = p + pMaxNew[dep+1] + numSplitPoints[dep+1]; 10914c367dbcSMatthew G. Knepley 1092cd0c2139SMatthew G Knepley /* Add cohesive cells, they are prisms */ 10939566063dSJacob Faibussowitsch PetscCall(DMPlexSetConeSize(sdm, hybcell, 2 + coneSize)); 1094412e9a14SMatthew G. Knepley switch (coneSize) { 10959566063dSJacob Faibussowitsch case 2: PetscCall(DMPlexSetCellType(sdm, hybcell, DM_POLYTOPE_SEG_PRISM_TENSOR));break; 10969566063dSJacob Faibussowitsch case 3: PetscCall(DMPlexSetCellType(sdm, hybcell, DM_POLYTOPE_TRI_PRISM_TENSOR));break; 10979566063dSJacob Faibussowitsch case 4: PetscCall(DMPlexSetCellType(sdm, hybcell, DM_POLYTOPE_QUAD_PRISM_TENSOR));break; 1098412e9a14SMatthew G. Knepley } 1099cd0c2139SMatthew G Knepley } else if (dep == 0) { 11004c367dbcSMatthew G. Knepley const PetscInt hybedge = p + pMaxNew[dep+1] + numSplitPoints[dep+1]; 1101cd0c2139SMatthew G Knepley 11029566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(dm, oldp, &support)); 11034c367dbcSMatthew G. Knepley for (e = 0, qn = 0, qp = 0, qf = 0; e < supportSize; ++e) { 1104cd0c2139SMatthew G Knepley PetscInt val; 1105cd0c2139SMatthew G Knepley 11069566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, support[e], &val)); 11074c367dbcSMatthew G. Knepley if (val == 1) ++qf; 11084c367dbcSMatthew G. Knepley if ((val == 1) || (val == (shift + 1))) ++qn; 11094c367dbcSMatthew G. Knepley if ((val == 1) || (val == -(shift + 1))) ++qp; 1110cd0c2139SMatthew G Knepley } 11114c367dbcSMatthew G. Knepley /* Split old vertex: Edges into original vertex and new cohesive edge */ 11129566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupportSize(sdm, newp, qn+1)); 11134c367dbcSMatthew G. Knepley /* Split new vertex: Edges into split vertex and new cohesive edge */ 11149566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupportSize(sdm, splitp, qp+1)); 11154c367dbcSMatthew G. Knepley /* Add hybrid edge */ 11169566063dSJacob Faibussowitsch PetscCall(DMPlexSetConeSize(sdm, hybedge, 2)); 11179566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupportSize(sdm, hybedge, qf)); 11189566063dSJacob Faibussowitsch PetscCall(DMPlexSetCellType(sdm, hybedge, DM_POLYTOPE_POINT_PRISM_TENSOR)); 1119cd0c2139SMatthew G Knepley } else if (dep == dim-2) { 11204c367dbcSMatthew G. Knepley const PetscInt hybface = p + pMaxNew[dep+1] + numSplitPoints[dep+1]; 11214c367dbcSMatthew G. Knepley 11229566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(dm, oldp, &support)); 11234c367dbcSMatthew G. Knepley for (e = 0, qn = 0, qp = 0, qf = 0; e < supportSize; ++e) { 1124cd0c2139SMatthew G Knepley PetscInt val; 1125cd0c2139SMatthew G Knepley 11269566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, support[e], &val)); 11274c367dbcSMatthew G. Knepley if (val == dim-1) ++qf; 11284c367dbcSMatthew G. Knepley if ((val == dim-1) || (val == (shift + dim-1))) ++qn; 11294c367dbcSMatthew G. Knepley if ((val == dim-1) || (val == -(shift + dim-1))) ++qp; 1130cd0c2139SMatthew G Knepley } 11314c367dbcSMatthew G. Knepley /* Split old edge: Faces into original edge and cohesive face (positive side?) */ 11329566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupportSize(sdm, newp, qn+1)); 11334c367dbcSMatthew G. Knepley /* Split new edge: Faces into split edge and cohesive face (negative side?) */ 11349566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupportSize(sdm, splitp, qp+1)); 11354c367dbcSMatthew G. Knepley /* Add hybrid face */ 11369566063dSJacob Faibussowitsch PetscCall(DMPlexSetConeSize(sdm, hybface, 4)); 11379566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupportSize(sdm, hybface, qf)); 11389566063dSJacob Faibussowitsch PetscCall(DMPlexSetCellType(sdm, hybface, DM_POLYTOPE_SEG_PRISM_TENSOR)); 1139cd0c2139SMatthew G Knepley } 1140cd0c2139SMatthew G Knepley } 1141cd0c2139SMatthew G Knepley } 114218c5995bSMatthew G. Knepley for (dep = 0; dep <= depth; ++dep) { 114318c5995bSMatthew G. Knepley for (p = 0; p < numUnsplitPoints[dep]; ++p) { 114418c5995bSMatthew G. Knepley const PetscInt oldp = unsplitPoints[dep][p]; 11452582d50cSToby Isaac const PetscInt newp = DMPlexShiftPoint_Internal(oldp, depth, depthShift) /*oldp + depthOffset[dep]*/; 114618c5995bSMatthew G. Knepley const PetscInt *support; 1147da1dd7e4SMatthew G. Knepley PetscInt coneSize, supportSize, qf, e, s; 114818c5995bSMatthew G. Knepley 11499566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, oldp, &coneSize)); 11509566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dm, oldp, &supportSize)); 11519566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(dm, oldp, &support)); 115218c5995bSMatthew G. Knepley if (dep == 0) { 115318c5995bSMatthew G. Knepley const PetscInt hybedge = p + pMaxNew[dep+1] + numSplitPoints[dep+1] + numSplitPoints[dep]; 115418c5995bSMatthew G. Knepley 115539254ff6SMatthew G. Knepley /* Unsplit vertex: Edges into original vertex, split edges, and new cohesive edge twice */ 115639254ff6SMatthew G. Knepley for (s = 0, qf = 0; s < supportSize; ++s, ++qf) { 11579566063dSJacob Faibussowitsch PetscCall(PetscFindInt(support[s], numSplitPoints[dep+1], splitPoints[dep+1], &e)); 115839254ff6SMatthew G. Knepley if (e >= 0) ++qf; 115939254ff6SMatthew G. Knepley } 11609566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupportSize(sdm, newp, qf+2)); 116118c5995bSMatthew G. Knepley /* Add hybrid edge */ 11629566063dSJacob Faibussowitsch PetscCall(DMPlexSetConeSize(sdm, hybedge, 2)); 1163e1757548SMatthew G. Knepley for (e = 0, qf = 0; e < supportSize; ++e) { 1164e1757548SMatthew G. Knepley PetscInt val; 1165e1757548SMatthew G. Knepley 11669566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, support[e], &val)); 1167e1757548SMatthew G. Knepley /* Split and unsplit edges produce hybrid faces */ 1168da1dd7e4SMatthew G. Knepley if (val == 1) ++qf; 1169da1dd7e4SMatthew G. Knepley if (val == (shift2 + 1)) ++qf; 1170e1757548SMatthew G. Knepley } 11719566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupportSize(sdm, hybedge, qf)); 11729566063dSJacob Faibussowitsch PetscCall(DMPlexSetCellType(sdm, hybedge, DM_POLYTOPE_POINT_PRISM_TENSOR)); 117318c5995bSMatthew G. Knepley } else if (dep == dim-2) { 117418c5995bSMatthew G. Knepley const PetscInt hybface = p + pMaxNew[dep+1] + numSplitPoints[dep+1] + numSplitPoints[dep]; 1175cd0c2139SMatthew G Knepley PetscInt val; 1176cd0c2139SMatthew G Knepley 1177da1dd7e4SMatthew G. Knepley for (e = 0, qf = 0; e < supportSize; ++e) { 11789566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, support[e], &val)); 1179da1dd7e4SMatthew G. Knepley if (val == dim-1) qf += 2; 1180da1dd7e4SMatthew G. Knepley else ++qf; 1181cd0c2139SMatthew G Knepley } 118218c5995bSMatthew G. Knepley /* Unsplit edge: Faces into original edge, split face, and cohesive face twice */ 11839566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupportSize(sdm, newp, qf+2)); 118418c5995bSMatthew G. Knepley /* Add hybrid face */ 1185da1dd7e4SMatthew G. Knepley for (e = 0, qf = 0; e < supportSize; ++e) { 11869566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, support[e], &val)); 1187da1dd7e4SMatthew G. Knepley if (val == dim-1) ++qf; 1188da1dd7e4SMatthew G. Knepley } 11899566063dSJacob Faibussowitsch PetscCall(DMPlexSetConeSize(sdm, hybface, 4)); 11909566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupportSize(sdm, hybface, qf)); 11919566063dSJacob Faibussowitsch PetscCall(DMPlexSetCellType(sdm, hybface, DM_POLYTOPE_SEG_PRISM_TENSOR)); 1192cd0c2139SMatthew G Knepley } 1193cd0c2139SMatthew G Knepley } 1194cd0c2139SMatthew G Knepley } 1195cd0c2139SMatthew G Knepley /* Step 4: Setup split DM */ 11969566063dSJacob Faibussowitsch PetscCall(DMSetUp(sdm)); 11979566063dSJacob Faibussowitsch PetscCall(DMPlexShiftPoints_Internal(dm, depthShift, sdm)); 11989566063dSJacob Faibussowitsch PetscCall(DMPlexGetMaxSizes(sdm, &maxConeSizeNew, &maxSupportSizeNew)); 11999566063dSJacob Faibussowitsch PetscCall(PetscMalloc3(PetscMax(maxConeSize, maxConeSizeNew)*3,&coneNew,PetscMax(maxConeSize, maxConeSizeNew)*3,&coneONew,PetscMax(maxSupportSize, maxSupportSizeNew),&supportNew)); 1200cd0c2139SMatthew G Knepley /* Step 6: Set cones and supports for new points */ 1201cd0c2139SMatthew G Knepley for (dep = 0; dep <= depth; ++dep) { 1202cd0c2139SMatthew G Knepley for (p = 0; p < numSplitPoints[dep]; ++p) { 1203cd0c2139SMatthew G Knepley const PetscInt oldp = splitPoints[dep][p]; 12042582d50cSToby Isaac const PetscInt newp = DMPlexShiftPoint_Internal(oldp, depth, depthShift) /*oldp + depthOffset[dep]*/; 12054c367dbcSMatthew G. Knepley const PetscInt splitp = p + pMaxNew[dep]; 1206cd0c2139SMatthew G Knepley const PetscInt *cone, *support, *ornt; 1207b5a892a1SMatthew G. Knepley DMPolytopeType ct; 12084c367dbcSMatthew G. Knepley PetscInt coneSize, supportSize, q, qf, qn, qp, v, e, s; 1209cd0c2139SMatthew G Knepley 12109566063dSJacob Faibussowitsch PetscCall(DMPlexGetCellType(dm, oldp, &ct)); 12119566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, oldp, &coneSize)); 12129566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, oldp, &cone)); 12139566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeOrientation(dm, oldp, &ornt)); 12149566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dm, oldp, &supportSize)); 12159566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(dm, oldp, &support)); 1216cd0c2139SMatthew G Knepley if (dep == depth-1) { 121796a07cd0SMatthew G. Knepley PetscBool hasUnsplit = PETSC_FALSE; 12184c367dbcSMatthew G. Knepley const PetscInt hybcell = p + pMaxNew[dep+1] + numSplitPoints[dep+1]; 1219cd0c2139SMatthew G Knepley const PetscInt *supportF; 1220cd0c2139SMatthew G Knepley 1221cd0c2139SMatthew G Knepley /* Split face: copy in old face to new face to start */ 12229566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(sdm, newp, &supportF)); 12239566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupport(sdm, splitp, supportF)); 1224cd0c2139SMatthew G Knepley /* Split old face: old vertices/edges in cone so no change */ 1225cd0c2139SMatthew G Knepley /* Split new face: new vertices/edges in cone */ 1226cd0c2139SMatthew G Knepley for (q = 0; q < coneSize; ++q) { 12279566063dSJacob Faibussowitsch PetscCall(PetscFindInt(cone[q], numSplitPoints[dep-1], splitPoints[dep-1], &v)); 122818c5995bSMatthew G. Knepley if (v < 0) { 12299566063dSJacob Faibussowitsch PetscCall(PetscFindInt(cone[q], numUnsplitPoints[dep-1], unsplitPoints[dep-1], &v)); 1230*08401ef6SPierre Jolivet PetscCheck(v >= 0,PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Could not locate point %d in split or unsplit points of depth %d", cone[q], dep-1); 12312582d50cSToby Isaac coneNew[2+q] = DMPlexShiftPoint_Internal(cone[q], depth, depthShift) /*cone[q] + depthOffset[dep-1]*/; 123296a07cd0SMatthew G. Knepley hasUnsplit = PETSC_TRUE; 123318c5995bSMatthew G. Knepley } else { 12344c367dbcSMatthew G. Knepley coneNew[2+q] = v + pMaxNew[dep-1]; 1235163235baSMatthew G. Knepley if (dep > 1) { 1236163235baSMatthew G. Knepley const PetscInt *econe; 1237163235baSMatthew G. Knepley PetscInt econeSize, r, vs, vu; 1238163235baSMatthew G. Knepley 12399566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, cone[q], &econeSize)); 12409566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, cone[q], &econe)); 1241163235baSMatthew G. Knepley for (r = 0; r < econeSize; ++r) { 12429566063dSJacob Faibussowitsch PetscCall(PetscFindInt(econe[r], numSplitPoints[dep-2], splitPoints[dep-2], &vs)); 12439566063dSJacob Faibussowitsch PetscCall(PetscFindInt(econe[r], numUnsplitPoints[dep-2], unsplitPoints[dep-2], &vu)); 1244163235baSMatthew G. Knepley if (vs >= 0) continue; 1245*08401ef6SPierre Jolivet PetscCheck(vu >= 0,PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Could not locate point %d in split or unsplit points of depth %d", econe[r], dep-2); 1246163235baSMatthew G. Knepley hasUnsplit = PETSC_TRUE; 1247163235baSMatthew G. Knepley } 1248163235baSMatthew G. Knepley } 1249cd0c2139SMatthew G Knepley } 1250cd0c2139SMatthew G Knepley } 12519566063dSJacob Faibussowitsch PetscCall(DMPlexSetCone(sdm, splitp, &coneNew[2])); 12529566063dSJacob Faibussowitsch PetscCall(DMPlexSetConeOrientation(sdm, splitp, ornt)); 1253e537020bSMatthew G. Knepley /* Face support */ 1254cd0c2139SMatthew G Knepley for (s = 0; s < supportSize; ++s) { 1255cd0c2139SMatthew G Knepley PetscInt val; 1256cd0c2139SMatthew G Knepley 12579566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, support[s], &val)); 1258cd0c2139SMatthew G Knepley if (val < 0) { 1259cd0c2139SMatthew G Knepley /* Split old face: Replace negative side cell with cohesive cell */ 12609566063dSJacob Faibussowitsch PetscCall(DMPlexInsertSupport(sdm, newp, s, hybcell)); 1261cd0c2139SMatthew G Knepley } else { 1262cd0c2139SMatthew G Knepley /* Split new face: Replace positive side cell with cohesive cell */ 12639566063dSJacob Faibussowitsch PetscCall(DMPlexInsertSupport(sdm, splitp, s, hybcell)); 1264e537020bSMatthew G. Knepley /* Get orientation for cohesive face */ 1265e537020bSMatthew G. Knepley { 1266e537020bSMatthew G. Knepley const PetscInt *ncone, *nconeO; 1267e537020bSMatthew G. Knepley PetscInt nconeSize, nc; 1268e537020bSMatthew G. Knepley 12699566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, support[s], &nconeSize)); 12709566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, support[s], &ncone)); 12719566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeOrientation(dm, support[s], &nconeO)); 1272e537020bSMatthew G. Knepley for (nc = 0; nc < nconeSize; ++nc) { 1273e537020bSMatthew G. Knepley if (ncone[nc] == oldp) { 1274e537020bSMatthew G. Knepley coneONew[0] = nconeO[nc]; 1275e537020bSMatthew G. Knepley break; 1276cd0c2139SMatthew G Knepley } 1277cd0c2139SMatthew G Knepley } 1278*08401ef6SPierre Jolivet PetscCheck(nc < nconeSize,PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Could not locate face %d in neighboring cell %d", oldp, support[s]); 1279e537020bSMatthew G. Knepley } 1280e537020bSMatthew G. Knepley } 1281e537020bSMatthew G. Knepley } 12824c367dbcSMatthew G. Knepley /* Cohesive cell: Old and new split face, then new cohesive faces */ 1283b5a892a1SMatthew G. Knepley const PetscInt *arr = DMPolytopeTypeGetArrangment(ct, coneONew[0]); 1284b5a892a1SMatthew G. Knepley 1285fd4b9f15SMatthew G. Knepley coneNew[0] = newp; /* Extracted negative side orientation above */ 12864c367dbcSMatthew G. Knepley coneNew[1] = splitp; 12874c367dbcSMatthew G. Knepley coneONew[1] = coneONew[0]; 1288e537020bSMatthew G. Knepley for (q = 0; q < coneSize; ++q) { 1289412e9a14SMatthew G. Knepley /* Hybrid faces must follow order from oriented end face */ 1290b5a892a1SMatthew G. Knepley const PetscInt qa = arr[q*2+0]; 1291b5a892a1SMatthew G. Knepley const PetscInt qo = arr[q*2+1]; 1292b5a892a1SMatthew G. Knepley DMPolytopeType ft = dep == 2 ? DM_POLYTOPE_SEGMENT : DM_POLYTOPE_POINT; 1293412e9a14SMatthew G. Knepley 12949566063dSJacob Faibussowitsch PetscCall(PetscFindInt(cone[qa], numSplitPoints[dep-1], splitPoints[dep-1], &v)); 129518c5995bSMatthew G. Knepley if (v < 0) { 12969566063dSJacob Faibussowitsch PetscCall(PetscFindInt(cone[qa], numUnsplitPoints[dep-1], unsplitPoints[dep-1], &v)); 129718c5995bSMatthew G. Knepley coneNew[2+q] = v + pMaxNew[dep] + numSplitPoints[dep] + numSplitPoints[dep-1]; 129818c5995bSMatthew G. Knepley } else { 129918c5995bSMatthew G. Knepley coneNew[2+q] = v + pMaxNew[dep] + numSplitPoints[dep]; 130018c5995bSMatthew G. Knepley } 1301b5a892a1SMatthew G. Knepley coneONew[2+q] = DMPolytopeTypeComposeOrientation(ft, qo, ornt[qa]); 1302e537020bSMatthew G. Knepley } 13039566063dSJacob Faibussowitsch PetscCall(DMPlexSetCone(sdm, hybcell, coneNew)); 13049566063dSJacob Faibussowitsch PetscCall(DMPlexSetConeOrientation(sdm, hybcell, coneONew)); 130596a07cd0SMatthew G. Knepley /* Label the hybrid cells on the boundary of the split */ 13069566063dSJacob Faibussowitsch if (hasUnsplit) PetscCall(DMLabelSetValue(label, -hybcell, dim)); 1307cd0c2139SMatthew G Knepley } else if (dep == 0) { 13084c367dbcSMatthew G. Knepley const PetscInt hybedge = p + pMaxNew[dep+1] + numSplitPoints[dep+1]; 1309cd0c2139SMatthew G Knepley 1310cd0c2139SMatthew G Knepley /* Split old vertex: Edges in old split faces and new cohesive edge */ 13114c367dbcSMatthew G. Knepley for (e = 0, qn = 0; e < supportSize; ++e) { 1312cd0c2139SMatthew G Knepley PetscInt val; 1313cd0c2139SMatthew G Knepley 13149566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, support[e], &val)); 1315cd0c2139SMatthew G Knepley if ((val == 1) || (val == (shift + 1))) { 13162582d50cSToby Isaac supportNew[qn++] = DMPlexShiftPoint_Internal(support[e], depth, depthShift) /*support[e] + depthOffset[dep+1]*/; 1317cd0c2139SMatthew G Knepley } 1318cd0c2139SMatthew G Knepley } 13194c367dbcSMatthew G. Knepley supportNew[qn] = hybedge; 13209566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupport(sdm, newp, supportNew)); 1321cd0c2139SMatthew G Knepley /* Split new vertex: Edges in new split faces and new cohesive edge */ 13224c367dbcSMatthew G. Knepley for (e = 0, qp = 0; e < supportSize; ++e) { 1323cd0c2139SMatthew G Knepley PetscInt val, edge; 1324cd0c2139SMatthew G Knepley 13259566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, support[e], &val)); 1326cd0c2139SMatthew G Knepley if (val == 1) { 13279566063dSJacob Faibussowitsch PetscCall(PetscFindInt(support[e], numSplitPoints[dep+1], splitPoints[dep+1], &edge)); 1328*08401ef6SPierre Jolivet PetscCheck(edge >= 0,comm, PETSC_ERR_ARG_WRONG, "Edge %d is not a split edge", support[e]); 13294c367dbcSMatthew G. Knepley supportNew[qp++] = edge + pMaxNew[dep+1]; 1330cd0c2139SMatthew G Knepley } else if (val == -(shift + 1)) { 13312582d50cSToby Isaac supportNew[qp++] = DMPlexShiftPoint_Internal(support[e], depth, depthShift) /*support[e] + depthOffset[dep+1]*/; 1332cd0c2139SMatthew G Knepley } 1333cd0c2139SMatthew G Knepley } 13344c367dbcSMatthew G. Knepley supportNew[qp] = hybedge; 13359566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupport(sdm, splitp, supportNew)); 13364c367dbcSMatthew G. Knepley /* Hybrid edge: Old and new split vertex */ 1337cd0c2139SMatthew G Knepley coneNew[0] = newp; 1338cd0c2139SMatthew G Knepley coneNew[1] = splitp; 13399566063dSJacob Faibussowitsch PetscCall(DMPlexSetCone(sdm, hybedge, coneNew)); 13404c367dbcSMatthew G. Knepley for (e = 0, qf = 0; e < supportSize; ++e) { 13414c367dbcSMatthew G. Knepley PetscInt val, edge; 13424c367dbcSMatthew G. Knepley 13439566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, support[e], &val)); 13444c367dbcSMatthew G. Knepley if (val == 1) { 13459566063dSJacob Faibussowitsch PetscCall(PetscFindInt(support[e], numSplitPoints[dep+1], splitPoints[dep+1], &edge)); 1346*08401ef6SPierre Jolivet PetscCheck(edge >= 0,comm, PETSC_ERR_ARG_WRONG, "Edge %d is not a split edge", support[e]); 13474c367dbcSMatthew G. Knepley supportNew[qf++] = edge + pMaxNew[dep+2] + numSplitPoints[dep+2]; 13484c367dbcSMatthew G. Knepley } 13494c367dbcSMatthew G. Knepley } 13509566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupport(sdm, hybedge, supportNew)); 1351cd0c2139SMatthew G Knepley } else if (dep == dim-2) { 13524c367dbcSMatthew G. Knepley const PetscInt hybface = p + pMaxNew[dep+1] + numSplitPoints[dep+1]; 13534c367dbcSMatthew G. Knepley 1354cd0c2139SMatthew G Knepley /* Split old edge: old vertices in cone so no change */ 1355cd0c2139SMatthew G Knepley /* Split new edge: new vertices in cone */ 1356cd0c2139SMatthew G Knepley for (q = 0; q < coneSize; ++q) { 13579566063dSJacob Faibussowitsch PetscCall(PetscFindInt(cone[q], numSplitPoints[dep-1], splitPoints[dep-1], &v)); 1358e1757548SMatthew G. Knepley if (v < 0) { 13599566063dSJacob Faibussowitsch PetscCall(PetscFindInt(cone[q], numUnsplitPoints[dep-1], unsplitPoints[dep-1], &v)); 1360*08401ef6SPierre Jolivet PetscCheck(v >= 0,PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Could not locate point %d in split or unsplit points of depth %d", cone[q], dep-1); 13612582d50cSToby Isaac coneNew[q] = DMPlexShiftPoint_Internal(cone[q], depth, depthShift) /*cone[q] + depthOffset[dep-1]*/; 1362e1757548SMatthew G. Knepley } else { 13634c367dbcSMatthew G. Knepley coneNew[q] = v + pMaxNew[dep-1]; 1364cd0c2139SMatthew G Knepley } 1365e1757548SMatthew G. Knepley } 13669566063dSJacob Faibussowitsch PetscCall(DMPlexSetCone(sdm, splitp, coneNew)); 1367cd0c2139SMatthew G Knepley /* Split old edge: Faces in positive side cells and old split faces */ 1368cd0c2139SMatthew G Knepley for (e = 0, q = 0; e < supportSize; ++e) { 1369cd0c2139SMatthew G Knepley PetscInt val; 1370cd0c2139SMatthew G Knepley 13719566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, support[e], &val)); 13724c367dbcSMatthew G. Knepley if (val == dim-1) { 13732582d50cSToby Isaac supportNew[q++] = DMPlexShiftPoint_Internal(support[e], depth, depthShift) /*support[e] + depthOffset[dep+1]*/; 13744c367dbcSMatthew G. Knepley } else if (val == (shift + dim-1)) { 13752582d50cSToby Isaac supportNew[q++] = DMPlexShiftPoint_Internal(support[e], depth, depthShift) /*support[e] + depthOffset[dep+1]*/; 1376cd0c2139SMatthew G Knepley } 1377cd0c2139SMatthew G Knepley } 1378b279cd2aSMatthew G. Knepley supportNew[q++] = p + pMaxNew[dep+1] + numSplitPoints[dep+1]; 13799566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupport(sdm, newp, supportNew)); 1380cd0c2139SMatthew G Knepley /* Split new edge: Faces in negative side cells and new split faces */ 1381cd0c2139SMatthew G Knepley for (e = 0, q = 0; e < supportSize; ++e) { 1382cd0c2139SMatthew G Knepley PetscInt val, face; 1383cd0c2139SMatthew G Knepley 13849566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, support[e], &val)); 1385cd0c2139SMatthew G Knepley if (val == dim-1) { 13869566063dSJacob Faibussowitsch PetscCall(PetscFindInt(support[e], numSplitPoints[dep+1], splitPoints[dep+1], &face)); 1387*08401ef6SPierre Jolivet PetscCheck(face >= 0,comm, PETSC_ERR_ARG_WRONG, "Face %d is not a split face", support[e]); 13884c367dbcSMatthew G. Knepley supportNew[q++] = face + pMaxNew[dep+1]; 1389cd0c2139SMatthew G Knepley } else if (val == -(shift + dim-1)) { 13902582d50cSToby Isaac supportNew[q++] = DMPlexShiftPoint_Internal(support[e], depth, depthShift) /*support[e] + depthOffset[dep+1]*/; 1391cd0c2139SMatthew G Knepley } 1392cd0c2139SMatthew G Knepley } 1393b279cd2aSMatthew G. Knepley supportNew[q++] = p + pMaxNew[dep+1] + numSplitPoints[dep+1]; 13949566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupport(sdm, splitp, supportNew)); 13954c367dbcSMatthew G. Knepley /* Hybrid face */ 13964c367dbcSMatthew G. Knepley coneNew[0] = newp; 13974c367dbcSMatthew G. Knepley coneNew[1] = splitp; 13984c367dbcSMatthew G. Knepley for (v = 0; v < coneSize; ++v) { 13994c367dbcSMatthew G. Knepley PetscInt vertex; 14009566063dSJacob Faibussowitsch PetscCall(PetscFindInt(cone[v], numSplitPoints[dep-1], splitPoints[dep-1], &vertex)); 1401e1757548SMatthew G. Knepley if (vertex < 0) { 14029566063dSJacob Faibussowitsch PetscCall(PetscFindInt(cone[v], numUnsplitPoints[dep-1], unsplitPoints[dep-1], &vertex)); 1403*08401ef6SPierre Jolivet PetscCheck(vertex >= 0,PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Could not locate point %d in split or unsplit points of depth %d", cone[v], dep-1); 1404e1757548SMatthew G. Knepley coneNew[2+v] = vertex + pMaxNew[dep] + numSplitPoints[dep] + numSplitPoints[dep-1]; 1405e1757548SMatthew G. Knepley } else { 14064c367dbcSMatthew G. Knepley coneNew[2+v] = vertex + pMaxNew[dep] + numSplitPoints[dep]; 14074c367dbcSMatthew G. Knepley } 1408e1757548SMatthew G. Knepley } 14099566063dSJacob Faibussowitsch PetscCall(DMPlexSetCone(sdm, hybface, coneNew)); 14104c367dbcSMatthew G. Knepley for (e = 0, qf = 0; e < supportSize; ++e) { 14114c367dbcSMatthew G. Knepley PetscInt val, face; 14124c367dbcSMatthew G. Knepley 14139566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, support[e], &val)); 14144c367dbcSMatthew G. Knepley if (val == dim-1) { 14159566063dSJacob Faibussowitsch PetscCall(PetscFindInt(support[e], numSplitPoints[dep+1], splitPoints[dep+1], &face)); 1416*08401ef6SPierre Jolivet PetscCheck(face >= 0,comm, PETSC_ERR_ARG_WRONG, "Face %d is not a split face", support[e]); 14174c367dbcSMatthew G. Knepley supportNew[qf++] = face + pMaxNew[dep+2] + numSplitPoints[dep+2]; 14184c367dbcSMatthew G. Knepley } 14194c367dbcSMatthew G. Knepley } 14209566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupport(sdm, hybface, supportNew)); 1421cd0c2139SMatthew G Knepley } 1422cd0c2139SMatthew G Knepley } 1423cd0c2139SMatthew G Knepley } 142418c5995bSMatthew G. Knepley for (dep = 0; dep <= depth; ++dep) { 142518c5995bSMatthew G. Knepley for (p = 0; p < numUnsplitPoints[dep]; ++p) { 142618c5995bSMatthew G. Knepley const PetscInt oldp = unsplitPoints[dep][p]; 14272582d50cSToby Isaac const PetscInt newp = DMPlexShiftPoint_Internal(oldp, depth, depthShift) /*oldp + depthOffset[dep]*/; 1428b5a892a1SMatthew G. Knepley const PetscInt *cone, *support; 1429e1757548SMatthew G. Knepley PetscInt coneSize, supportSize, supportSizeNew, q, qf, e, f, s; 143018c5995bSMatthew G. Knepley 14319566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, oldp, &coneSize)); 14329566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, oldp, &cone)); 14339566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dm, oldp, &supportSize)); 14349566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(dm, oldp, &support)); 143518c5995bSMatthew G. Knepley if (dep == 0) { 143618c5995bSMatthew G. Knepley const PetscInt hybedge = p + pMaxNew[dep+1] + numSplitPoints[dep+1] + numSplitPoints[dep]; 143718c5995bSMatthew G. Knepley 143818c5995bSMatthew G. Knepley /* Unsplit vertex */ 14399566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(sdm, newp, &supportSizeNew)); 144018c5995bSMatthew G. Knepley for (s = 0, q = 0; s < supportSize; ++s) { 14412582d50cSToby Isaac supportNew[q++] = DMPlexShiftPoint_Internal(support[s], depth, depthShift) /*support[s] + depthOffset[dep+1]*/; 14429566063dSJacob Faibussowitsch PetscCall(PetscFindInt(support[s], numSplitPoints[dep+1], splitPoints[dep+1], &e)); 144318c5995bSMatthew G. Knepley if (e >= 0) { 144418c5995bSMatthew G. Knepley supportNew[q++] = e + pMaxNew[dep+1]; 144518c5995bSMatthew G. Knepley } 144618c5995bSMatthew G. Knepley } 144718c5995bSMatthew G. Knepley supportNew[q++] = hybedge; 144818c5995bSMatthew G. Knepley supportNew[q++] = hybedge; 1449*08401ef6SPierre Jolivet PetscCheck(q == supportSizeNew,comm, PETSC_ERR_ARG_WRONG, "Support size %d != %d for vertex %d", q, supportSizeNew, newp); 14509566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupport(sdm, newp, supportNew)); 145118c5995bSMatthew G. Knepley /* Hybrid edge */ 145218c5995bSMatthew G. Knepley coneNew[0] = newp; 145318c5995bSMatthew G. Knepley coneNew[1] = newp; 14549566063dSJacob Faibussowitsch PetscCall(DMPlexSetCone(sdm, hybedge, coneNew)); 145518c5995bSMatthew G. Knepley for (e = 0, qf = 0; e < supportSize; ++e) { 145618c5995bSMatthew G. Knepley PetscInt val, edge; 145718c5995bSMatthew G. Knepley 14589566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, support[e], &val)); 145918c5995bSMatthew G. Knepley if (val == 1) { 14609566063dSJacob Faibussowitsch PetscCall(PetscFindInt(support[e], numSplitPoints[dep+1], splitPoints[dep+1], &edge)); 1461*08401ef6SPierre Jolivet PetscCheck(edge >= 0,comm, PETSC_ERR_ARG_WRONG, "Edge %d is not a split edge", support[e]); 146218c5995bSMatthew G. Knepley supportNew[qf++] = edge + pMaxNew[dep+2] + numSplitPoints[dep+2]; 1463e1757548SMatthew G. Knepley } else if (val == (shift2 + 1)) { 14649566063dSJacob Faibussowitsch PetscCall(PetscFindInt(support[e], numUnsplitPoints[dep+1], unsplitPoints[dep+1], &edge)); 1465*08401ef6SPierre Jolivet PetscCheck(edge >= 0,comm, PETSC_ERR_ARG_WRONG, "Edge %d is not a unsplit edge", support[e]); 1466e1757548SMatthew G. Knepley supportNew[qf++] = edge + pMaxNew[dep+2] + numSplitPoints[dep+2] + numSplitPoints[dep+1]; 146718c5995bSMatthew G. Knepley } 146818c5995bSMatthew G. Knepley } 14699566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupport(sdm, hybedge, supportNew)); 1470e1757548SMatthew G. Knepley } else if (dep == dim-2) { 1471e1757548SMatthew G. Knepley const PetscInt hybface = p + pMaxNew[dep+1] + numSplitPoints[dep+1] + numSplitPoints[dep]; 1472e1757548SMatthew G. Knepley 1473da1dd7e4SMatthew G. Knepley /* Unsplit edge: Faces into original edge, split face, and hybrid face twice */ 1474e1757548SMatthew G. Knepley for (f = 0, qf = 0; f < supportSize; ++f) { 1475e1757548SMatthew G. Knepley PetscInt val, face; 1476e1757548SMatthew G. Knepley 14779566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, support[f], &val)); 1478e1757548SMatthew G. Knepley if (val == dim-1) { 14799566063dSJacob Faibussowitsch PetscCall(PetscFindInt(support[f], numSplitPoints[dep+1], splitPoints[dep+1], &face)); 1480*08401ef6SPierre Jolivet PetscCheck(face >= 0,comm, PETSC_ERR_ARG_WRONG, "Face %d is not a split face", support[f]); 14812582d50cSToby Isaac supportNew[qf++] = DMPlexShiftPoint_Internal(support[f], depth, depthShift) /*support[f] + depthOffset[dep+1]*/; 1482e1757548SMatthew G. Knepley supportNew[qf++] = face + pMaxNew[dep+1]; 1483e1757548SMatthew G. Knepley } else { 14842582d50cSToby Isaac supportNew[qf++] = DMPlexShiftPoint_Internal(support[f], depth, depthShift) /*support[f] + depthOffset[dep+1]*/; 1485e1757548SMatthew G. Knepley } 1486e1757548SMatthew G. Knepley } 1487e1757548SMatthew G. Knepley supportNew[qf++] = hybface; 1488e1757548SMatthew G. Knepley supportNew[qf++] = hybface; 14899566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(sdm, newp, &supportSizeNew)); 1490*08401ef6SPierre Jolivet PetscCheck(qf == supportSizeNew,PETSC_COMM_SELF, PETSC_ERR_PLIB, "Support size for unsplit edge %d is %d != %d", newp, qf, supportSizeNew); 14919566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupport(sdm, newp, supportNew)); 1492e1757548SMatthew G. Knepley /* Add hybrid face */ 1493e1757548SMatthew G. Knepley coneNew[0] = newp; 1494212cc919SMatthew G. Knepley coneNew[1] = newp; 14959566063dSJacob Faibussowitsch PetscCall(PetscFindInt(cone[0], numUnsplitPoints[dep-1], unsplitPoints[dep-1], &v)); 1496*08401ef6SPierre Jolivet PetscCheck(v >= 0,comm, PETSC_ERR_ARG_WRONG, "Vertex %d is not an unsplit vertex", cone[0]); 1497212cc919SMatthew G. Knepley coneNew[2] = v + pMaxNew[dep] + numSplitPoints[dep] + numSplitPoints[dep-1]; 14989566063dSJacob Faibussowitsch PetscCall(PetscFindInt(cone[1], numUnsplitPoints[dep-1], unsplitPoints[dep-1], &v)); 1499*08401ef6SPierre Jolivet PetscCheck(v >= 0,comm, PETSC_ERR_ARG_WRONG, "Vertex %d is not an unsplit vertex", cone[1]); 1500e1757548SMatthew G. Knepley coneNew[3] = v + pMaxNew[dep] + numSplitPoints[dep] + numSplitPoints[dep-1]; 15019566063dSJacob Faibussowitsch PetscCall(DMPlexSetCone(sdm, hybface, coneNew)); 1502da1dd7e4SMatthew G. Knepley for (f = 0, qf = 0; f < supportSize; ++f) { 1503da1dd7e4SMatthew G. Knepley PetscInt val, face; 1504da1dd7e4SMatthew G. Knepley 15059566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, support[f], &val)); 1506da1dd7e4SMatthew G. Knepley if (val == dim-1) { 15079566063dSJacob Faibussowitsch PetscCall(PetscFindInt(support[f], numSplitPoints[dep+1], splitPoints[dep+1], &face)); 1508da1dd7e4SMatthew G. Knepley supportNew[qf++] = face + pMaxNew[dep+2] + numSplitPoints[dep+2]; 1509da1dd7e4SMatthew G. Knepley } 1510da1dd7e4SMatthew G. Knepley } 15119566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(sdm, hybface, &supportSizeNew)); 1512*08401ef6SPierre Jolivet PetscCheck(qf == supportSizeNew,PETSC_COMM_SELF, PETSC_ERR_PLIB, "Support size for hybrid face %d is %d != %d", hybface, qf, supportSizeNew); 15139566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupport(sdm, hybface, supportNew)); 1514cd0c2139SMatthew G Knepley } 1515cd0c2139SMatthew G Knepley } 1516cd0c2139SMatthew G Knepley } 1517cd0c2139SMatthew G Knepley /* Step 6b: Replace split points in negative side cones */ 1518cd0c2139SMatthew G Knepley for (sp = 0; sp < numSP; ++sp) { 1519cd0c2139SMatthew G Knepley PetscInt dep = values[sp]; 1520cd0c2139SMatthew G Knepley IS pIS; 1521cd0c2139SMatthew G Knepley PetscInt numPoints; 1522cd0c2139SMatthew G Knepley const PetscInt *points; 1523cd0c2139SMatthew G Knepley 1524cd0c2139SMatthew G Knepley if (dep >= 0) continue; 15259566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(label, dep, &pIS)); 1526cd0c2139SMatthew G Knepley if (!pIS) continue; 1527cd0c2139SMatthew G Knepley dep = -dep - shift; 15289566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(pIS, &numPoints)); 15299566063dSJacob Faibussowitsch PetscCall(ISGetIndices(pIS, &points)); 1530cd0c2139SMatthew G Knepley for (p = 0; p < numPoints; ++p) { 1531cd0c2139SMatthew G Knepley const PetscInt oldp = points[p]; 15322582d50cSToby Isaac const PetscInt newp = DMPlexShiftPoint_Internal(oldp, depth, depthShift) /*depthOffset[dep] + oldp*/; 1533cd0c2139SMatthew G Knepley const PetscInt *cone; 1534cd0c2139SMatthew G Knepley PetscInt coneSize, c; 153550cf782dSMatthew G. Knepley /* PetscBool replaced = PETSC_FALSE; */ 1536cd0c2139SMatthew G Knepley 1537cd0c2139SMatthew G Knepley /* Negative edge: replace split vertex */ 1538cd0c2139SMatthew G Knepley /* Negative cell: replace split face */ 15399566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(sdm, newp, &coneSize)); 15409566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(sdm, newp, &cone)); 1541cd0c2139SMatthew G Knepley for (c = 0; c < coneSize; ++c) { 1542e38fbfedSToby Isaac const PetscInt coldp = DMPlexShiftPointInverse_Internal(cone[c],depth,depthShift); 1543cd0c2139SMatthew G Knepley PetscInt csplitp, cp, val; 1544cd0c2139SMatthew G Knepley 15459566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, coldp, &val)); 1546cd0c2139SMatthew G Knepley if (val == dep-1) { 15479566063dSJacob Faibussowitsch PetscCall(PetscFindInt(coldp, numSplitPoints[dep-1], splitPoints[dep-1], &cp)); 1548*08401ef6SPierre Jolivet PetscCheck(cp >= 0,comm, PETSC_ERR_ARG_WRONG, "Point %d is not a split point of dimension %d", oldp, dep-1); 1549cd0c2139SMatthew G Knepley csplitp = pMaxNew[dep-1] + cp; 15509566063dSJacob Faibussowitsch PetscCall(DMPlexInsertCone(sdm, newp, c, csplitp)); 155150cf782dSMatthew G. Knepley /* replaced = PETSC_TRUE; */ 1552cd0c2139SMatthew G Knepley } 1553cd0c2139SMatthew G Knepley } 15544a189a86SMatthew G. Knepley /* Cells with only a vertex or edge on the submesh have no replacement */ 155528b400f6SJacob Faibussowitsch /* PetscCheck(replaced,comm, PETSC_ERR_ARG_WRONG, "The cone of point %d does not contain split points", oldp); */ 1556cd0c2139SMatthew G Knepley } 15579566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(pIS, &points)); 15589566063dSJacob Faibussowitsch PetscCall(ISDestroy(&pIS)); 1559cd0c2139SMatthew G Knepley } 1560fa8e8ae5SToby Isaac /* Step 7: Coordinates */ 15619566063dSJacob Faibussowitsch PetscCall(DMPlexShiftCoordinates_Internal(dm, depthShift, sdm)); 15629566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateSection(sdm, &coordSection)); 15639566063dSJacob Faibussowitsch PetscCall(DMGetCoordinatesLocal(sdm, &coordinates)); 15649566063dSJacob Faibussowitsch PetscCall(VecGetArray(coordinates, &coords)); 1565cd0c2139SMatthew G Knepley for (v = 0; v < (numSplitPoints ? numSplitPoints[0] : 0); ++v) { 15662582d50cSToby Isaac const PetscInt newp = DMPlexShiftPoint_Internal(splitPoints[0][v], depth, depthShift) /*depthOffset[0] + splitPoints[0][v]*/; 1567cd0c2139SMatthew G Knepley const PetscInt splitp = pMaxNew[0] + v; 1568cd0c2139SMatthew G Knepley PetscInt dof, off, soff, d; 1569cd0c2139SMatthew G Knepley 15709566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(coordSection, newp, &dof)); 15719566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(coordSection, newp, &off)); 15729566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(coordSection, splitp, &soff)); 1573cd0c2139SMatthew G Knepley for (d = 0; d < dof; ++d) coords[soff+d] = coords[off+d]; 1574cd0c2139SMatthew G Knepley } 15759566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(coordinates, &coords)); 1576fa8e8ae5SToby Isaac /* Step 8: SF, if I can figure this out we can split the mesh in parallel */ 15779566063dSJacob Faibussowitsch PetscCall(DMPlexShiftSF_Internal(dm, depthShift, sdm)); 1578fa8e8ae5SToby Isaac /* Step 9: Labels */ 15799566063dSJacob Faibussowitsch PetscCall(DMPlexShiftLabels_Internal(dm, depthShift, sdm)); 15809566063dSJacob Faibussowitsch PetscCall(DMPlexCreateVTKLabel_Internal(dm, PETSC_FALSE, sdm)); 15819566063dSJacob Faibussowitsch PetscCall(DMGetNumLabels(sdm, &numLabels)); 1582cd0c2139SMatthew G Knepley for (dep = 0; dep <= depth; ++dep) { 1583cd0c2139SMatthew G Knepley for (p = 0; p < numSplitPoints[dep]; ++p) { 15842582d50cSToby Isaac const PetscInt newp = DMPlexShiftPoint_Internal(splitPoints[dep][p], depth, depthShift) /*depthOffset[dep] + splitPoints[dep][p]*/; 1585cd0c2139SMatthew G Knepley const PetscInt splitp = pMaxNew[dep] + p; 1586cd0c2139SMatthew G Knepley PetscInt l; 1587cd0c2139SMatthew G Knepley 15887db7e0a7SMatthew G. Knepley if (splitLabel) { 15897db7e0a7SMatthew G. Knepley const PetscInt val = 100 + dep; 15907db7e0a7SMatthew G. Knepley 15919566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(splitLabel, newp, val)); 15929566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(splitLabel, splitp, -val)); 15937db7e0a7SMatthew G. Knepley } 1594cd0c2139SMatthew G Knepley for (l = 0; l < numLabels; ++l) { 1595cd0c2139SMatthew G Knepley DMLabel mlabel; 1596cd0c2139SMatthew G Knepley const char *lname; 1597cd0c2139SMatthew G Knepley PetscInt val; 15989a356370SMatthew G. Knepley PetscBool isDepth; 1599cd0c2139SMatthew G Knepley 16009566063dSJacob Faibussowitsch PetscCall(DMGetLabelName(sdm, l, &lname)); 16019566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(lname, "depth", &isDepth)); 16029a356370SMatthew G. Knepley if (isDepth) continue; 16039566063dSJacob Faibussowitsch PetscCall(DMGetLabel(sdm, lname, &mlabel)); 16049566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(mlabel, newp, &val)); 1605cd0c2139SMatthew G Knepley if (val >= 0) { 16069566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(mlabel, splitp, val)); 1607cd0c2139SMatthew G Knepley } 1608cd0c2139SMatthew G Knepley } 1609cd0c2139SMatthew G Knepley } 1610cd0c2139SMatthew G Knepley } 1611cd0c2139SMatthew G Knepley for (sp = 0; sp < numSP; ++sp) { 1612cd0c2139SMatthew G Knepley const PetscInt dep = values[sp]; 1613cd0c2139SMatthew G Knepley 1614cd0c2139SMatthew G Knepley if ((dep < 0) || (dep > depth)) continue; 16159566063dSJacob Faibussowitsch if (splitIS[dep]) PetscCall(ISRestoreIndices(splitIS[dep], &splitPoints[dep])); 16169566063dSJacob Faibussowitsch PetscCall(ISDestroy(&splitIS[dep])); 16179566063dSJacob Faibussowitsch if (unsplitIS[dep]) PetscCall(ISRestoreIndices(unsplitIS[dep], &unsplitPoints[dep])); 16189566063dSJacob Faibussowitsch PetscCall(ISDestroy(&unsplitIS[dep])); 1619cd0c2139SMatthew G Knepley } 1620cd0c2139SMatthew G Knepley if (label) { 16219566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(valueIS, &values)); 16229566063dSJacob Faibussowitsch PetscCall(ISDestroy(&valueIS)); 1623cd0c2139SMatthew G Knepley } 16240d4d4d06SMatthew G. Knepley for (d = 0; d <= depth; ++d) { 16259566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthStratum(sdm, d, NULL, &pEnd)); 162636dbac82SMatthew G. Knepley pMaxNew[d] = pEnd - numHybridPoints[d] - numHybridPointsOld[d]; 16270d4d4d06SMatthew G. Knepley } 16289566063dSJacob Faibussowitsch PetscCall(PetscFree3(coneNew, coneONew, supportNew)); 16299566063dSJacob Faibussowitsch PetscCall(PetscFree5(depthMax, depthEnd, depthShift, pMaxNew, numHybridPointsOld)); 16309566063dSJacob Faibussowitsch PetscCall(PetscFree7(splitIS, unsplitIS, numSplitPoints, numUnsplitPoints, numHybridPoints, splitPoints, unsplitPoints)); 1631cd0c2139SMatthew G Knepley PetscFunctionReturn(0); 1632cd0c2139SMatthew G Knepley } 1633cd0c2139SMatthew G Knepley 1634cd0c2139SMatthew G Knepley /*@C 1635cd0c2139SMatthew G Knepley DMPlexConstructCohesiveCells - Construct cohesive cells which split the face along an internal interface 1636cd0c2139SMatthew G Knepley 1637cd0c2139SMatthew G Knepley Collective on dm 1638cd0c2139SMatthew G Knepley 1639cd0c2139SMatthew G Knepley Input Parameters: 1640cd0c2139SMatthew G Knepley + dm - The original DM 164153156dfcSMatthew G. Knepley - label - The label specifying the boundary faces (this could be auto-generated) 1642cd0c2139SMatthew G Knepley 1643cd0c2139SMatthew G Knepley Output Parameters: 16447db7e0a7SMatthew G. Knepley + splitLabel - The label containing the split points, or NULL if no output is desired 1645cd0c2139SMatthew G Knepley - dmSplit - The new DM 1646cd0c2139SMatthew G Knepley 1647cd0c2139SMatthew G Knepley Level: developer 1648cd0c2139SMatthew G Knepley 16492be2b188SMatthew G Knepley .seealso: DMCreate(), DMPlexLabelCohesiveComplete() 1650cd0c2139SMatthew G Knepley @*/ 16517db7e0a7SMatthew G. Knepley PetscErrorCode DMPlexConstructCohesiveCells(DM dm, DMLabel label, DMLabel splitLabel, DM *dmSplit) 1652cd0c2139SMatthew G Knepley { 1653cd0c2139SMatthew G Knepley DM sdm; 1654cd0c2139SMatthew G Knepley PetscInt dim; 1655cd0c2139SMatthew G Knepley 1656cd0c2139SMatthew G Knepley PetscFunctionBegin; 1657cd0c2139SMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 1658064a246eSJacob Faibussowitsch PetscValidPointer(dmSplit, 4); 16599566063dSJacob Faibussowitsch PetscCall(DMCreate(PetscObjectComm((PetscObject)dm), &sdm)); 16609566063dSJacob Faibussowitsch PetscCall(DMSetType(sdm, DMPLEX)); 16619566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 16629566063dSJacob Faibussowitsch PetscCall(DMSetDimension(sdm, dim)); 1663cd0c2139SMatthew G Knepley switch (dim) { 1664cd0c2139SMatthew G Knepley case 2: 1665cd0c2139SMatthew G Knepley case 3: 16669566063dSJacob Faibussowitsch PetscCall(DMPlexConstructCohesiveCells_Internal(dm, label, splitLabel, sdm)); 1667cd0c2139SMatthew G Knepley break; 1668cd0c2139SMatthew G Knepley default: 166998921bdaSJacob Faibussowitsch SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Cannot construct cohesive cells for dimension %d", dim); 1670cd0c2139SMatthew G Knepley } 1671cd0c2139SMatthew G Knepley *dmSplit = sdm; 1672cd0c2139SMatthew G Knepley PetscFunctionReturn(0); 1673cd0c2139SMatthew G Knepley } 1674cd0c2139SMatthew G Knepley 16750f66a230SMatthew G. Knepley /* Returns the side of the surface for a given cell with a face on the surface */ 16760f66a230SMatthew G. Knepley static PetscErrorCode GetSurfaceSide_Static(DM dm, DM subdm, PetscInt numSubpoints, const PetscInt *subpoints, PetscInt cell, PetscInt face, PetscBool *pos) 16770f66a230SMatthew G. Knepley { 16780f66a230SMatthew G. Knepley const PetscInt *cone, *ornt; 16790f66a230SMatthew G. Knepley PetscInt dim, coneSize, c; 16800f66a230SMatthew G. Knepley 16810f66a230SMatthew G. Knepley PetscFunctionBegin; 16820f66a230SMatthew G. Knepley *pos = PETSC_TRUE; 16839566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 16849566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, cell, &coneSize)); 16859566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, cell, &cone)); 16869566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeOrientation(dm, cell, &ornt)); 16870f66a230SMatthew G. Knepley for (c = 0; c < coneSize; ++c) { 16880f66a230SMatthew G. Knepley if (cone[c] == face) { 16890f66a230SMatthew G. Knepley PetscInt o = ornt[c]; 16900f66a230SMatthew G. Knepley 16910f66a230SMatthew G. Knepley if (subdm) { 16920f66a230SMatthew G. Knepley const PetscInt *subcone, *subornt; 16930f66a230SMatthew G. Knepley PetscInt subpoint, subface, subconeSize, sc; 16940f66a230SMatthew G. Knepley 16959566063dSJacob Faibussowitsch PetscCall(PetscFindInt(cell, numSubpoints, subpoints, &subpoint)); 16969566063dSJacob Faibussowitsch PetscCall(PetscFindInt(face, numSubpoints, subpoints, &subface)); 16979566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(subdm, subpoint, &subconeSize)); 16989566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(subdm, subpoint, &subcone)); 16999566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeOrientation(subdm, subpoint, &subornt)); 17000f66a230SMatthew G. Knepley for (sc = 0; sc < subconeSize; ++sc) { 17010f66a230SMatthew G. Knepley if (subcone[sc] == subface) { 17020f66a230SMatthew G. Knepley o = subornt[0]; 17030f66a230SMatthew G. Knepley break; 17040f66a230SMatthew G. Knepley } 17050f66a230SMatthew G. Knepley } 1706*08401ef6SPierre Jolivet PetscCheck(sc < subconeSize,PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Could not find subpoint %d (%d) in cone for subpoint %d (%d)", subface, face, subpoint, cell); 17070f66a230SMatthew G. Knepley } 17080f66a230SMatthew G. Knepley if (o >= 0) *pos = PETSC_TRUE; 17090f66a230SMatthew G. Knepley else *pos = PETSC_FALSE; 17100f66a230SMatthew G. Knepley break; 17110f66a230SMatthew G. Knepley } 17120f66a230SMatthew G. Knepley } 1713*08401ef6SPierre Jolivet PetscCheck(c != coneSize,PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Cell %d in split face %d support does not have it in the cone", cell, face); 17140f66a230SMatthew G. Knepley PetscFunctionReturn(0); 17150f66a230SMatthew G. Knepley } 17160f66a230SMatthew G. Knepley 1717cd0c2139SMatthew G Knepley /*@ 17180f66a230SMatthew G. Knepley DMPlexLabelCohesiveComplete - Starting with a label marking points on an internal surface, we add all other mesh pieces 1719cd0c2139SMatthew G Knepley to complete the surface 1720cd0c2139SMatthew G Knepley 1721cd0c2139SMatthew G Knepley Input Parameters: 1722cd0c2139SMatthew G Knepley + dm - The DM 17230f66a230SMatthew G. Knepley . label - A DMLabel marking the surface 17240f66a230SMatthew G. Knepley . blabel - A DMLabel marking the vertices on the boundary which will not be duplicated, or NULL to find them automatically 1725bb55d314SMatthew G. Knepley . flip - Flag to flip the submesh normal and replace points on the other side 172647946fd8SMatthew G. Knepley - subdm - The subDM associated with the label, or NULL 1727cd0c2139SMatthew G Knepley 1728cd0c2139SMatthew G Knepley Output Parameter: 1729cd0c2139SMatthew G Knepley . label - A DMLabel marking all surface points 1730cd0c2139SMatthew G Knepley 17310f66a230SMatthew G. Knepley Note: The vertices in blabel are called "unsplit" in the terminology from hybrid cell creation. 17320f66a230SMatthew G. Knepley 1733cd0c2139SMatthew G Knepley Level: developer 1734cd0c2139SMatthew G Knepley 17352be2b188SMatthew G Knepley .seealso: DMPlexConstructCohesiveCells(), DMPlexLabelComplete() 1736cd0c2139SMatthew G Knepley @*/ 17370f66a230SMatthew G. Knepley PetscErrorCode DMPlexLabelCohesiveComplete(DM dm, DMLabel label, DMLabel blabel, PetscBool flip, DM subdm) 1738cd0c2139SMatthew G Knepley { 1739d90583fdSMatthew G. Knepley DMLabel depthLabel; 17408630cb1aSMatthew G. Knepley IS dimIS, subpointIS = NULL, facePosIS, faceNegIS, crossEdgeIS = NULL; 174147946fd8SMatthew G. Knepley const PetscInt *points, *subpoints; 1742bb55d314SMatthew G. Knepley const PetscInt rev = flip ? -1 : 1; 1743412e9a14SMatthew G. Knepley PetscInt shift = 100, shift2 = 200, dim, depth, dep, cStart, cEnd, vStart, vEnd, numPoints, numSubpoints, p, val; 1744cd0c2139SMatthew G Knepley 1745cd0c2139SMatthew G Knepley PetscFunctionBegin; 17469566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepth(dm, &depth)); 17479566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 17489566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthLabel(dm, &depthLabel)); 174947946fd8SMatthew G. Knepley if (subdm) { 17509566063dSJacob Faibussowitsch PetscCall(DMPlexGetSubpointIS(subdm, &subpointIS)); 175147946fd8SMatthew G. Knepley if (subpointIS) { 17529566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(subpointIS, &numSubpoints)); 17539566063dSJacob Faibussowitsch PetscCall(ISGetIndices(subpointIS, &subpoints)); 175447946fd8SMatthew G. Knepley } 175547946fd8SMatthew G. Knepley } 1756d7c8f101SMatthew G. Knepley /* Mark cell on the fault, and its faces which touch the fault: cell orientation for face gives the side of the fault */ 17579566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(label, dim-1, &dimIS)); 175897d8846cSMatthew Knepley if (!dimIS) PetscFunctionReturn(0); 17599566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(dimIS, &numPoints)); 17609566063dSJacob Faibussowitsch PetscCall(ISGetIndices(dimIS, &points)); 1761d7c8f101SMatthew G. Knepley for (p = 0; p < numPoints; ++p) { /* Loop over fault faces */ 1762cd0c2139SMatthew G Knepley const PetscInt *support; 1763cd0c2139SMatthew G Knepley PetscInt supportSize, s; 1764cd0c2139SMatthew G Knepley 17659566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dm, points[p], &supportSize)); 1766c4419245SMatthew G. Knepley #if 0 1767c4419245SMatthew G. Knepley if (supportSize != 2) { 1768c4419245SMatthew G. Knepley const PetscInt *lp; 1769c4419245SMatthew G. Knepley PetscInt Nlp, pind; 1770c4419245SMatthew G. Knepley 1771c4419245SMatthew G. Knepley /* Check that for a cell with a single support face, that face is in the SF */ 1772c4419245SMatthew G. Knepley /* THis check only works for the remote side. We would need root side information */ 17739566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(dm->sf, NULL, &Nlp, &lp, NULL)); 17749566063dSJacob Faibussowitsch PetscCall(PetscFindInt(points[p], Nlp, lp, &pind)); 1775*08401ef6SPierre Jolivet PetscCheck(pind >= 0,PetscObjectComm((PetscObject) dm), PETSC_ERR_ARG_WRONG, "Split face %d has %d != 2 supports, and the face is not shared with another process", points[p], supportSize); 1776c4419245SMatthew G. Knepley } 1777c4419245SMatthew G. Knepley #endif 17789566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(dm, points[p], &support)); 1779cd0c2139SMatthew G Knepley for (s = 0; s < supportSize; ++s) { 17800f66a230SMatthew G. Knepley const PetscInt *cone; 1781cd0c2139SMatthew G Knepley PetscInt coneSize, c; 17820f66a230SMatthew G. Knepley PetscBool pos; 1783cd0c2139SMatthew G Knepley 17849566063dSJacob Faibussowitsch PetscCall(GetSurfaceSide_Static(dm, subdm, numSubpoints, subpoints, support[s], points[p], &pos)); 17859566063dSJacob Faibussowitsch if (pos) PetscCall(DMLabelSetValue(label, support[s], rev*(shift+dim))); 17869566063dSJacob Faibussowitsch else PetscCall(DMLabelSetValue(label, support[s], -rev*(shift+dim))); 17870f66a230SMatthew G. Knepley if (rev < 0) pos = !pos ? PETSC_TRUE : PETSC_FALSE; 17880f66a230SMatthew G. Knepley /* Put faces touching the fault in the label */ 17899566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, support[s], &coneSize)); 17909566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, support[s], &cone)); 1791cd0c2139SMatthew G Knepley for (c = 0; c < coneSize; ++c) { 1792cd0c2139SMatthew G Knepley const PetscInt point = cone[c]; 1793cd0c2139SMatthew G Knepley 17949566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, point, &val)); 1795cd0c2139SMatthew G Knepley if (val == -1) { 1796cd0c2139SMatthew G Knepley PetscInt *closure = NULL; 1797cd0c2139SMatthew G Knepley PetscInt closureSize, cl; 1798cd0c2139SMatthew G Knepley 17999566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(dm, point, PETSC_TRUE, &closureSize, &closure)); 1800cd0c2139SMatthew G Knepley for (cl = 0; cl < closureSize*2; cl += 2) { 1801cd0c2139SMatthew G Knepley const PetscInt clp = closure[cl]; 1802a0541d8aSMatthew G. Knepley PetscInt bval = -1; 1803cd0c2139SMatthew G Knepley 18049566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, clp, &val)); 18059566063dSJacob Faibussowitsch if (blabel) PetscCall(DMLabelGetValue(blabel, clp, &bval)); 1806a0541d8aSMatthew G. Knepley if ((val >= 0) && (val < dim-1) && (bval < 0)) { 18079566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(label, point, pos == PETSC_TRUE ? shift+dim-1 : -(shift+dim-1))); 1808cd0c2139SMatthew G Knepley break; 1809cd0c2139SMatthew G Knepley } 1810cd0c2139SMatthew G Knepley } 18119566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dm, point, PETSC_TRUE, &closureSize, &closure)); 1812cd0c2139SMatthew G Knepley } 1813cd0c2139SMatthew G Knepley } 1814cd0c2139SMatthew G Knepley } 1815cd0c2139SMatthew G Knepley } 18169566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(dimIS, &points)); 18179566063dSJacob Faibussowitsch PetscCall(ISDestroy(&dimIS)); 18189566063dSJacob Faibussowitsch if (subpointIS) PetscCall(ISRestoreIndices(subpointIS, &subpoints)); 1819a0541d8aSMatthew G. Knepley /* Mark boundary points as unsplit */ 182086200784SMatthew G. Knepley if (blabel) { 18219566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(blabel, 1, &dimIS)); 18229566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(dimIS, &numPoints)); 18239566063dSJacob Faibussowitsch PetscCall(ISGetIndices(dimIS, &points)); 1824a0541d8aSMatthew G. Knepley for (p = 0; p < numPoints; ++p) { 1825a0541d8aSMatthew G. Knepley const PetscInt point = points[p]; 1826a0541d8aSMatthew G. Knepley PetscInt val, bval; 1827a0541d8aSMatthew G. Knepley 18289566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(blabel, point, &bval)); 1829a0541d8aSMatthew G. Knepley if (bval >= 0) { 18309566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, point, &val)); 1831f7019248SMatthew G. Knepley if ((val < 0) || (val > dim)) { 1832f7019248SMatthew G. Knepley /* This could be a point added from splitting a vertex on an adjacent fault, otherwise its just wrong */ 18339566063dSJacob Faibussowitsch PetscCall(DMLabelClearValue(blabel, point, bval)); 1834f7019248SMatthew G. Knepley } 1835f7019248SMatthew G. Knepley } 1836f7019248SMatthew G. Knepley } 1837f7019248SMatthew G. Knepley for (p = 0; p < numPoints; ++p) { 1838f7019248SMatthew G. Knepley const PetscInt point = points[p]; 1839f7019248SMatthew G. Knepley PetscInt val, bval; 1840f7019248SMatthew G. Knepley 18419566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(blabel, point, &bval)); 1842f7019248SMatthew G. Knepley if (bval >= 0) { 184386200784SMatthew G. Knepley const PetscInt *cone, *support; 184486200784SMatthew G. Knepley PetscInt coneSize, supportSize, s, valA, valB, valE; 184586200784SMatthew G. Knepley 1846a0541d8aSMatthew G. Knepley /* Mark as unsplit */ 18479566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, point, &val)); 1848*08401ef6SPierre Jolivet PetscCheck(!(val < 0) && !(val > dim),PETSC_COMM_SELF, PETSC_ERR_PLIB, "Point %d has label value %d, should be part of the fault", point, val); 18499566063dSJacob Faibussowitsch PetscCall(DMLabelClearValue(label, point, val)); 18509566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(label, point, shift2+val)); 18512c06a818SMatthew G. Knepley /* Check for cross-edge 18522c06a818SMatthew G. Knepley A cross-edge has endpoints which are both on the boundary of the surface, but the edge itself is not. */ 185386200784SMatthew G. Knepley if (val != 0) continue; 18549566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(dm, point, &support)); 18559566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dm, point, &supportSize)); 185686200784SMatthew G. Knepley for (s = 0; s < supportSize; ++s) { 18579566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, support[s], &cone)); 18589566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, support[s], &coneSize)); 1859*08401ef6SPierre Jolivet PetscCheck(coneSize == 2,PETSC_COMM_SELF, PETSC_ERR_PLIB, "Edge %D has %D vertices != 2", support[s], coneSize); 18609566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(blabel, cone[0], &valA)); 18619566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(blabel, cone[1], &valB)); 18629566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(blabel, support[s], &valE)); 18639566063dSJacob Faibussowitsch if ((valE < 0) && (valA >= 0) && (valB >= 0) && (cone[0] != cone[1])) PetscCall(DMLabelSetValue(blabel, support[s], 2)); 186486200784SMatthew G. Knepley } 1865a0541d8aSMatthew G. Knepley } 1866a0541d8aSMatthew G. Knepley } 18679566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(dimIS, &points)); 18689566063dSJacob Faibussowitsch PetscCall(ISDestroy(&dimIS)); 1869a0541d8aSMatthew G. Knepley } 1870cd0c2139SMatthew G Knepley /* Search for other cells/faces/edges connected to the fault by a vertex */ 18719566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthStratum(dm, 0, &vStart, &vEnd)); 18729566063dSJacob Faibussowitsch PetscCall(DMPlexGetSimplexOrBoxCells(dm, 0, &cStart, &cEnd)); 18739566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(label, 0, &dimIS)); 18747d2fefb6SMatthew G. Knepley /* TODO Why are we including cross edges here? Shouldn't they be in the star of boundary vertices? */ 18759566063dSJacob Faibussowitsch if (blabel) PetscCall(DMLabelGetStratumIS(blabel, 2, &crossEdgeIS)); 187686200784SMatthew G. Knepley if (dimIS && crossEdgeIS) { 187786200784SMatthew G. Knepley IS vertIS = dimIS; 187886200784SMatthew G. Knepley 18799566063dSJacob Faibussowitsch PetscCall(ISExpand(vertIS, crossEdgeIS, &dimIS)); 18809566063dSJacob Faibussowitsch PetscCall(ISDestroy(&crossEdgeIS)); 18819566063dSJacob Faibussowitsch PetscCall(ISDestroy(&vertIS)); 188286200784SMatthew G. Knepley } 1883dc86033cSMatthew G. Knepley if (!dimIS) { 1884dc86033cSMatthew G. Knepley PetscFunctionReturn(0); 1885dc86033cSMatthew G. Knepley } 18869566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(dimIS, &numPoints)); 18879566063dSJacob Faibussowitsch PetscCall(ISGetIndices(dimIS, &points)); 1888d7c8f101SMatthew G. Knepley for (p = 0; p < numPoints; ++p) { /* Loop over fault vertices */ 1889cd0c2139SMatthew G Knepley PetscInt *star = NULL; 189086200784SMatthew G. Knepley PetscInt starSize, s; 1891cd0c2139SMatthew G Knepley PetscInt again = 1; /* 0: Finished 1: Keep iterating after a change 2: No change */ 1892cd0c2139SMatthew G Knepley 1893d4622b2cSMatthew G. Knepley /* All points connected to the fault are inside a cell, so at the top level we will only check cells */ 18949566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(dm, points[p], PETSC_FALSE, &starSize, &star)); 1895cd0c2139SMatthew G Knepley while (again) { 1896*08401ef6SPierre Jolivet PetscCheck(again <= 1,PetscObjectComm((PetscObject)dm), PETSC_ERR_PLIB, "Could not classify all cells connected to the fault"); 1897cd0c2139SMatthew G Knepley again = 0; 1898cd0c2139SMatthew G Knepley for (s = 0; s < starSize*2; s += 2) { 1899cd0c2139SMatthew G Knepley const PetscInt point = star[s]; 1900cd0c2139SMatthew G Knepley const PetscInt *cone; 1901cd0c2139SMatthew G Knepley PetscInt coneSize, c; 1902cd0c2139SMatthew G Knepley 1903412e9a14SMatthew G. Knepley if ((point < cStart) || (point >= cEnd)) continue; 19049566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, point, &val)); 1905cd0c2139SMatthew G Knepley if (val != -1) continue; 1906d4622b2cSMatthew G. Knepley again = again == 1 ? 1 : 2; 19079566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, point, &coneSize)); 19089566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, point, &cone)); 1909cd0c2139SMatthew G Knepley for (c = 0; c < coneSize; ++c) { 19109566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, cone[c], &val)); 1911cd0c2139SMatthew G Knepley if (val != -1) { 1912d7c8f101SMatthew G. Knepley const PetscInt *ccone; 1913166d9d0cSMatthew G. Knepley PetscInt cconeSize, cc, side; 1914d7c8f101SMatthew G. Knepley 1915*08401ef6SPierre Jolivet PetscCheck(PetscAbs(val) >= shift,PetscObjectComm((PetscObject)dm), PETSC_ERR_PLIB, "Face %d on cell %d has an invalid label %d", cone[c], point, val); 191637a6de01SMatthew G. Knepley if (val > 0) side = 1; 191737a6de01SMatthew G. Knepley else side = -1; 19189566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(label, point, side*(shift+dim))); 1919d7c8f101SMatthew G. Knepley /* Mark cell faces which touch the fault */ 19209566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, point, &cconeSize)); 19219566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, point, &ccone)); 1922d7c8f101SMatthew G. Knepley for (cc = 0; cc < cconeSize; ++cc) { 1923d7c8f101SMatthew G. Knepley PetscInt *closure = NULL; 1924d7c8f101SMatthew G. Knepley PetscInt closureSize, cl; 1925d7c8f101SMatthew G. Knepley 19269566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, ccone[cc], &val)); 1927166d9d0cSMatthew G. Knepley if (val != -1) continue; 19289566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(dm, ccone[cc], PETSC_TRUE, &closureSize, &closure)); 1929d4622b2cSMatthew G. Knepley for (cl = 0; cl < closureSize*2; cl += 2) { 1930d7c8f101SMatthew G. Knepley const PetscInt clp = closure[cl]; 1931d7c8f101SMatthew G. Knepley 19329566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, clp, &val)); 1933d7c8f101SMatthew G. Knepley if (val == -1) continue; 19349566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(label, ccone[cc], side*(shift+dim-1))); 193537a6de01SMatthew G. Knepley break; 193637a6de01SMatthew G. Knepley } 19379566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dm, ccone[cc], PETSC_TRUE, &closureSize, &closure)); 1938cd0c2139SMatthew G Knepley } 1939cd0c2139SMatthew G Knepley again = 1; 1940cd0c2139SMatthew G Knepley break; 1941cd0c2139SMatthew G Knepley } 1942cd0c2139SMatthew G Knepley } 1943cd0c2139SMatthew G Knepley } 1944cd0c2139SMatthew G Knepley } 1945cd0c2139SMatthew G Knepley /* Classify the rest by cell membership */ 1946cd0c2139SMatthew G Knepley for (s = 0; s < starSize*2; s += 2) { 1947cd0c2139SMatthew G Knepley const PetscInt point = star[s]; 1948cd0c2139SMatthew G Knepley 19499566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, point, &val)); 1950cd0c2139SMatthew G Knepley if (val == -1) { 1951cd0c2139SMatthew G Knepley PetscInt *sstar = NULL; 1952cd0c2139SMatthew G Knepley PetscInt sstarSize, ss; 1953412e9a14SMatthew G. Knepley PetscBool marked = PETSC_FALSE, isHybrid; 1954cd0c2139SMatthew G Knepley 19559566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(dm, point, PETSC_FALSE, &sstarSize, &sstar)); 1956cd0c2139SMatthew G Knepley for (ss = 0; ss < sstarSize*2; ss += 2) { 1957cd0c2139SMatthew G Knepley const PetscInt spoint = sstar[ss]; 1958cd0c2139SMatthew G Knepley 1959412e9a14SMatthew G. Knepley if ((spoint < cStart) || (spoint >= cEnd)) continue; 19609566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, spoint, &val)); 1961*08401ef6SPierre Jolivet PetscCheck(val != -1,PetscObjectComm((PetscObject)dm), PETSC_ERR_PLIB, "Cell %d in star of %d does not have a valid label", spoint, point); 19629566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(depthLabel, point, &dep)); 1963cd0c2139SMatthew G Knepley if (val > 0) { 19649566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(label, point, shift+dep)); 1965cd0c2139SMatthew G Knepley } else { 19669566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(label, point, -(shift+dep))); 1967cd0c2139SMatthew G Knepley } 1968cd0c2139SMatthew G Knepley marked = PETSC_TRUE; 1969cd0c2139SMatthew G Knepley break; 1970cd0c2139SMatthew G Knepley } 19719566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dm, point, PETSC_FALSE, &sstarSize, &sstar)); 19729566063dSJacob Faibussowitsch PetscCall(DMPlexCellIsHybrid_Internal(dm, point, &isHybrid)); 1973*08401ef6SPierre Jolivet PetscCheck(isHybrid || marked,PetscObjectComm((PetscObject)dm), PETSC_ERR_PLIB, "Point %d could not be classified", point); 1974cd0c2139SMatthew G Knepley } 1975cd0c2139SMatthew G Knepley } 19769566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dm, points[p], PETSC_FALSE, &starSize, &star)); 1977cd0c2139SMatthew G Knepley } 19789566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(dimIS, &points)); 19799566063dSJacob Faibussowitsch PetscCall(ISDestroy(&dimIS)); 19807d2fefb6SMatthew G. Knepley /* If any faces touching the fault divide cells on either side, split them 19817d2fefb6SMatthew G. Knepley This only occurs without a surface boundary */ 19829566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(label, shift+dim-1, &facePosIS)); 19839566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(label, -(shift+dim-1), &faceNegIS)); 19849566063dSJacob Faibussowitsch PetscCall(ISExpand(facePosIS, faceNegIS, &dimIS)); 19859566063dSJacob Faibussowitsch PetscCall(ISDestroy(&facePosIS)); 19869566063dSJacob Faibussowitsch PetscCall(ISDestroy(&faceNegIS)); 19879566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(dimIS, &numPoints)); 19889566063dSJacob Faibussowitsch PetscCall(ISGetIndices(dimIS, &points)); 198918c5995bSMatthew G. Knepley for (p = 0; p < numPoints; ++p) { 199018c5995bSMatthew G. Knepley const PetscInt point = points[p]; 199118c5995bSMatthew G. Knepley const PetscInt *support; 199218c5995bSMatthew G. Knepley PetscInt supportSize, valA, valB; 199318c5995bSMatthew G. Knepley 19949566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dm, point, &supportSize)); 199518c5995bSMatthew G. Knepley if (supportSize != 2) continue; 19969566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(dm, point, &support)); 19979566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, support[0], &valA)); 19989566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, support[1], &valB)); 199918c5995bSMatthew G. Knepley if ((valA == -1) || (valB == -1)) continue; 200018c5995bSMatthew G. Knepley if (valA*valB > 0) continue; 200118c5995bSMatthew G. Knepley /* Split the face */ 20029566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, point, &valA)); 20039566063dSJacob Faibussowitsch PetscCall(DMLabelClearValue(label, point, valA)); 20049566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(label, point, dim-1)); 2005e1757548SMatthew G. Knepley /* Label its closure: 2006e1757548SMatthew G. Knepley unmarked: label as unsplit 2007e1757548SMatthew G. Knepley incident: relabel as split 2008e1757548SMatthew G. Knepley split: do nothing 2009e1757548SMatthew G. Knepley */ 201018c5995bSMatthew G. Knepley { 201118c5995bSMatthew G. Knepley PetscInt *closure = NULL; 201218c5995bSMatthew G. Knepley PetscInt closureSize, cl; 201318c5995bSMatthew G. Knepley 20149566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(dm, point, PETSC_TRUE, &closureSize, &closure)); 201518c5995bSMatthew G. Knepley for (cl = 0; cl < closureSize*2; cl += 2) { 20169566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, closure[cl], &valA)); 20178771c1d3SMatthew G. Knepley if (valA == -1) { /* Mark as unsplit */ 20189566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(depthLabel, closure[cl], &dep)); 20199566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(label, closure[cl], shift2+dep)); 20208771c1d3SMatthew G. Knepley } else if (((valA >= shift) && (valA < shift2)) || ((valA <= -shift) && (valA > -shift2))) { 20219566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(depthLabel, closure[cl], &dep)); 20229566063dSJacob Faibussowitsch PetscCall(DMLabelClearValue(label, closure[cl], valA)); 20239566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(label, closure[cl], dep)); 2024e1757548SMatthew G. Knepley } 202518c5995bSMatthew G. Knepley } 20269566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dm, point, PETSC_TRUE, &closureSize, &closure)); 202718c5995bSMatthew G. Knepley } 202818c5995bSMatthew G. Knepley } 20299566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(dimIS, &points)); 20309566063dSJacob Faibussowitsch PetscCall(ISDestroy(&dimIS)); 2031cd0c2139SMatthew G Knepley PetscFunctionReturn(0); 2032cd0c2139SMatthew G Knepley } 2033cd0c2139SMatthew G Knepley 2034720e594eSMatthew G. Knepley /* Check that no cell have all vertices on the fault */ 2035720e594eSMatthew G. Knepley PetscErrorCode DMPlexCheckValidSubmesh_Private(DM dm, DMLabel label, DM subdm) 2036720e594eSMatthew G. Knepley { 2037720e594eSMatthew G. Knepley IS subpointIS; 2038720e594eSMatthew G. Knepley const PetscInt *dmpoints; 2039720e594eSMatthew G. Knepley PetscInt defaultValue, cStart, cEnd, c, vStart, vEnd; 2040720e594eSMatthew G. Knepley 2041720e594eSMatthew G. Knepley PetscFunctionBegin; 2042720e594eSMatthew G. Knepley if (!label) PetscFunctionReturn(0); 20439566063dSJacob Faibussowitsch PetscCall(DMLabelGetDefaultValue(label, &defaultValue)); 20449566063dSJacob Faibussowitsch PetscCall(DMPlexGetSubpointIS(subdm, &subpointIS)); 2045720e594eSMatthew G. Knepley if (!subpointIS) PetscFunctionReturn(0); 20469566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(subdm, 0, &cStart, &cEnd)); 20479566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthStratum(dm, 0, &vStart, &vEnd)); 20489566063dSJacob Faibussowitsch PetscCall(ISGetIndices(subpointIS, &dmpoints)); 2049720e594eSMatthew G. Knepley for (c = cStart; c < cEnd; ++c) { 2050720e594eSMatthew G. Knepley PetscBool invalidCell = PETSC_TRUE; 2051720e594eSMatthew G. Knepley PetscInt *closure = NULL; 2052720e594eSMatthew G. Knepley PetscInt closureSize, cl; 2053720e594eSMatthew G. Knepley 20549566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(dm, dmpoints[c], PETSC_TRUE, &closureSize, &closure)); 2055720e594eSMatthew G. Knepley for (cl = 0; cl < closureSize*2; cl += 2) { 2056720e594eSMatthew G. Knepley PetscInt value = 0; 2057720e594eSMatthew G. Knepley 2058720e594eSMatthew G. Knepley if ((closure[cl] < vStart) || (closure[cl] >= vEnd)) continue; 20599566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, closure[cl], &value)); 2060720e594eSMatthew G. Knepley if (value == defaultValue) {invalidCell = PETSC_FALSE; break;} 2061720e594eSMatthew G. Knepley } 20629566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dm, dmpoints[c], PETSC_TRUE, &closureSize, &closure)); 2063720e594eSMatthew G. Knepley if (invalidCell) { 20649566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(subpointIS, &dmpoints)); 20659566063dSJacob Faibussowitsch PetscCall(ISDestroy(&subpointIS)); 20669566063dSJacob Faibussowitsch PetscCall(DMDestroy(&subdm)); 206798921bdaSJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Ambiguous submesh. Cell %D has all of its vertices on the submesh.", dmpoints[c]); 2068720e594eSMatthew G. Knepley } 2069720e594eSMatthew G. Knepley } 20709566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(subpointIS, &dmpoints)); 2071720e594eSMatthew G. Knepley PetscFunctionReturn(0); 2072720e594eSMatthew G. Knepley } 2073720e594eSMatthew G. Knepley 2074c08575a3SMatthew G. Knepley /*@ 20753cf72582SMatthew G. Knepley DMPlexCreateHybridMesh - Create a mesh with hybrid cells along an internal interface 20763cf72582SMatthew G. Knepley 20773cf72582SMatthew G. Knepley Collective on dm 20783cf72582SMatthew G. Knepley 20793cf72582SMatthew G. Knepley Input Parameters: 20803cf72582SMatthew G. Knepley + dm - The original DM 2081720e594eSMatthew G. Knepley . label - The label specifying the interface vertices 2082720e594eSMatthew G. Knepley - bdlabel - The optional label specifying the interface boundary vertices 20833cf72582SMatthew G. Knepley 20843cf72582SMatthew G. Knepley Output Parameters: 20857db7e0a7SMatthew G. Knepley + hybridLabel - The label fully marking the interface, or NULL if no output is desired 20867db7e0a7SMatthew G. Knepley . splitLabel - The label containing the split points, or NULL if no output is desired 2087720e594eSMatthew G. Knepley . dmInterface - The new interface DM, or NULL 2088720e594eSMatthew G. Knepley - dmHybrid - The new DM with cohesive cells 20893cf72582SMatthew G. Knepley 20906eccb800SMatthew Knepley Note: The hybridLabel indicates what parts of the original mesh impinged on the on division surface. For points 20916eccb800SMatthew Knepley directly on the division surface, they are labeled with their dimension, so an edge 7 on the division surface would be 20926eccb800SMatthew Knepley 7 (1) in hybridLabel. For points that impinge from the positive side, they are labeled with 100+dim, so an edge 6 with 20936eccb800SMatthew Knepley one vertex 3 on the surface would be 6 (101) and 3 (0) in hybridLabel. If an edge 9 from the negative side of the 20946eccb800SMatthew Knepley surface also hits vertex 3, it would be 9 (-101) in hybridLabel. 20956eccb800SMatthew Knepley 20966eccb800SMatthew Knepley The splitLabel indicates what points in the new hybrid mesh were the result of splitting points in the original 20976eccb800SMatthew Knepley mesh. The label value is +=100+dim for each point. For example, if two edges 10 and 14 in the hybrid resulting from 20986eccb800SMatthew Knepley splitting an edge in the original mesh, you would have 10 (101) and 14 (-101) in the splitLabel. 20996eccb800SMatthew Knepley 21006eccb800SMatthew Knepley The dmInterface is a DM built from the original division surface. It has a label which can be retrieved using 21016eccb800SMatthew Knepley DMPlexGetSubpointMap() which maps each point back to the point in the surface of the original mesh. 21026eccb800SMatthew Knepley 21033cf72582SMatthew G. Knepley Level: developer 21043cf72582SMatthew G. Knepley 21056eccb800SMatthew Knepley .seealso: DMPlexConstructCohesiveCells(), DMPlexLabelCohesiveComplete(), DMPlexGetSubpointMap(), DMCreate() 21063cf72582SMatthew G. Knepley @*/ 21077db7e0a7SMatthew G. Knepley PetscErrorCode DMPlexCreateHybridMesh(DM dm, DMLabel label, DMLabel bdlabel, DMLabel *hybridLabel, DMLabel *splitLabel, DM *dmInterface, DM *dmHybrid) 21083cf72582SMatthew G. Knepley { 21093cf72582SMatthew G. Knepley DM idm; 21107db7e0a7SMatthew G. Knepley DMLabel subpointMap, hlabel, slabel = NULL; 21113cf72582SMatthew G. Knepley PetscInt dim; 21123cf72582SMatthew G. Knepley 21133cf72582SMatthew G. Knepley PetscFunctionBegin; 21143cf72582SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 2115720e594eSMatthew G. Knepley if (bdlabel) PetscValidPointer(bdlabel, 3); 2116720e594eSMatthew G. Knepley if (hybridLabel) PetscValidPointer(hybridLabel, 4); 21177db7e0a7SMatthew G. Knepley if (splitLabel) PetscValidPointer(splitLabel, 5); 21187db7e0a7SMatthew G. Knepley if (dmInterface) PetscValidPointer(dmInterface, 6); 21197db7e0a7SMatthew G. Knepley PetscValidPointer(dmHybrid, 7); 21209566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 21219566063dSJacob Faibussowitsch PetscCall(DMPlexCreateSubmesh(dm, label, 1, PETSC_FALSE, &idm)); 21229566063dSJacob Faibussowitsch PetscCall(DMPlexCheckValidSubmesh_Private(dm, label, idm)); 21239566063dSJacob Faibussowitsch PetscCall(DMPlexOrient(idm)); 21249566063dSJacob Faibussowitsch PetscCall(DMPlexGetSubpointMap(idm, &subpointMap)); 21259566063dSJacob Faibussowitsch PetscCall(DMLabelDuplicate(subpointMap, &hlabel)); 21269566063dSJacob Faibussowitsch PetscCall(DMLabelClearStratum(hlabel, dim)); 21277db7e0a7SMatthew G. Knepley if (splitLabel) { 21287db7e0a7SMatthew G. Knepley const char *name; 21297db7e0a7SMatthew G. Knepley char sname[PETSC_MAX_PATH_LEN]; 21307db7e0a7SMatthew G. Knepley 21319566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject) hlabel, &name)); 21329566063dSJacob Faibussowitsch PetscCall(PetscStrncpy(sname, name, PETSC_MAX_PATH_LEN)); 21339566063dSJacob Faibussowitsch PetscCall(PetscStrcat(sname, " split")); 21349566063dSJacob Faibussowitsch PetscCall(DMLabelCreate(PETSC_COMM_SELF, sname, &slabel)); 21357db7e0a7SMatthew G. Knepley } 21369566063dSJacob Faibussowitsch PetscCall(DMPlexLabelCohesiveComplete(dm, hlabel, bdlabel, PETSC_FALSE, idm)); 2137720e594eSMatthew G. Knepley if (dmInterface) {*dmInterface = idm;} 21389566063dSJacob Faibussowitsch else PetscCall(DMDestroy(&idm)); 21399566063dSJacob Faibussowitsch PetscCall(DMPlexConstructCohesiveCells(dm, hlabel, slabel, dmHybrid)); 21409566063dSJacob Faibussowitsch PetscCall(DMPlexCopy_Internal(dm, PETSC_TRUE, *dmHybrid)); 21413cf72582SMatthew G. Knepley if (hybridLabel) *hybridLabel = hlabel; 21429566063dSJacob Faibussowitsch else PetscCall(DMLabelDestroy(&hlabel)); 21437db7e0a7SMatthew G. Knepley if (splitLabel) *splitLabel = slabel; 21444a7ee7d0SMatthew G. Knepley { 21454a7ee7d0SMatthew G. Knepley DM cdm; 21464a7ee7d0SMatthew G. Knepley DMLabel ctLabel; 21474a7ee7d0SMatthew G. Knepley 21484a7ee7d0SMatthew G. Knepley /* We need to somehow share the celltype label with the coordinate dm */ 21499566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDM(*dmHybrid, &cdm)); 21509566063dSJacob Faibussowitsch PetscCall(DMPlexGetCellTypeLabel(*dmHybrid, &ctLabel)); 21519566063dSJacob Faibussowitsch PetscCall(DMSetLabel(cdm, ctLabel)); 21524a7ee7d0SMatthew G. Knepley } 2153cd0c2139SMatthew G Knepley PetscFunctionReturn(0); 2154cd0c2139SMatthew G Knepley } 2155cd0c2139SMatthew G Knepley 2156efa14ee0SMatthew G Knepley /* Here we need the explicit assumption that: 2157efa14ee0SMatthew G Knepley 2158efa14ee0SMatthew G Knepley For any marked cell, the marked vertices constitute a single face 2159efa14ee0SMatthew G Knepley */ 2160830e53efSMatthew G. Knepley static PetscErrorCode DMPlexMarkSubmesh_Uninterpolated(DM dm, DMLabel vertexLabel, PetscInt value, DMLabel subpointMap, PetscInt *numFaces, PetscInt *nFV, DM subdm) 2161efa14ee0SMatthew G Knepley { 2162fed694aaSMatthew G. Knepley IS subvertexIS = NULL; 2163efa14ee0SMatthew G Knepley const PetscInt *subvertices; 2164412e9a14SMatthew G. Knepley PetscInt *pStart, *pEnd, pSize; 2165efa14ee0SMatthew G Knepley PetscInt depth, dim, d, numSubVerticesInitial = 0, v; 2166efa14ee0SMatthew G Knepley 2167efa14ee0SMatthew G Knepley PetscFunctionBegin; 2168efa14ee0SMatthew G Knepley *numFaces = 0; 2169efa14ee0SMatthew G Knepley *nFV = 0; 21709566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepth(dm, &depth)); 21719566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 217277d178adSMatthew G. Knepley pSize = PetscMax(depth, dim) + 1; 21739566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(pSize, &pStart, pSize, &pEnd)); 2174efa14ee0SMatthew G Knepley for (d = 0; d <= depth; ++d) { 21759566063dSJacob Faibussowitsch PetscCall(DMPlexGetSimplexOrBoxCells(dm, depth-d, &pStart[d], &pEnd[d])); 2176efa14ee0SMatthew G Knepley } 2177efa14ee0SMatthew G Knepley /* Loop over initial vertices and mark all faces in the collective star() */ 21789566063dSJacob Faibussowitsch if (vertexLabel) PetscCall(DMLabelGetStratumIS(vertexLabel, value, &subvertexIS)); 2179efa14ee0SMatthew G Knepley if (subvertexIS) { 21809566063dSJacob Faibussowitsch PetscCall(ISGetSize(subvertexIS, &numSubVerticesInitial)); 21819566063dSJacob Faibussowitsch PetscCall(ISGetIndices(subvertexIS, &subvertices)); 2182efa14ee0SMatthew G Knepley } 2183efa14ee0SMatthew G Knepley for (v = 0; v < numSubVerticesInitial; ++v) { 2184efa14ee0SMatthew G Knepley const PetscInt vertex = subvertices[v]; 21850298fd71SBarry Smith PetscInt *star = NULL; 2186efa14ee0SMatthew G Knepley PetscInt starSize, s, numCells = 0, c; 2187efa14ee0SMatthew G Knepley 21889566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(dm, vertex, PETSC_FALSE, &starSize, &star)); 2189efa14ee0SMatthew G Knepley for (s = 0; s < starSize*2; s += 2) { 2190efa14ee0SMatthew G Knepley const PetscInt point = star[s]; 2191efa14ee0SMatthew G Knepley if ((point >= pStart[depth]) && (point < pEnd[depth])) star[numCells++] = point; 2192efa14ee0SMatthew G Knepley } 2193efa14ee0SMatthew G Knepley for (c = 0; c < numCells; ++c) { 2194efa14ee0SMatthew G Knepley const PetscInt cell = star[c]; 21950298fd71SBarry Smith PetscInt *closure = NULL; 2196efa14ee0SMatthew G Knepley PetscInt closureSize, cl; 2197efa14ee0SMatthew G Knepley PetscInt cellLoc, numCorners = 0, faceSize = 0; 2198efa14ee0SMatthew G Knepley 21999566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(subpointMap, cell, &cellLoc)); 220065560c7fSMatthew G Knepley if (cellLoc == 2) continue; 2201*08401ef6SPierre Jolivet PetscCheck(cellLoc < 0,PetscObjectComm((PetscObject)dm), PETSC_ERR_PLIB, "Cell %d has dimension %d in the surface label", cell, cellLoc); 22029566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(dm, cell, PETSC_TRUE, &closureSize, &closure)); 2203efa14ee0SMatthew G Knepley for (cl = 0; cl < closureSize*2; cl += 2) { 2204efa14ee0SMatthew G Knepley const PetscInt point = closure[cl]; 2205efa14ee0SMatthew G Knepley PetscInt vertexLoc; 2206efa14ee0SMatthew G Knepley 2207efa14ee0SMatthew G Knepley if ((point >= pStart[0]) && (point < pEnd[0])) { 2208efa14ee0SMatthew G Knepley ++numCorners; 22099566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(vertexLabel, point, &vertexLoc)); 2210830e53efSMatthew G. Knepley if (vertexLoc == value) closure[faceSize++] = point; 2211efa14ee0SMatthew G Knepley } 2212efa14ee0SMatthew G Knepley } 22139566063dSJacob Faibussowitsch if (!(*nFV)) PetscCall(DMPlexGetNumFaceVertices(dm, dim, numCorners, nFV)); 2214*08401ef6SPierre Jolivet PetscCheck(faceSize <= *nFV,PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Invalid submesh: Too many vertices %d of an element on the surface", faceSize); 2215efa14ee0SMatthew G Knepley if (faceSize == *nFV) { 2216007baee2SMatthew G. Knepley const PetscInt *cells = NULL; 2217007baee2SMatthew G. Knepley PetscInt numCells, nc; 2218007baee2SMatthew G. Knepley 2219efa14ee0SMatthew G Knepley ++(*numFaces); 2220efa14ee0SMatthew G Knepley for (cl = 0; cl < faceSize; ++cl) { 22219566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(subpointMap, closure[cl], 0)); 2222efa14ee0SMatthew G Knepley } 22239566063dSJacob Faibussowitsch PetscCall(DMPlexGetJoin(dm, faceSize, closure, &numCells, &cells)); 2224007baee2SMatthew G. Knepley for (nc = 0; nc < numCells; ++nc) { 22259566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(subpointMap, cells[nc], 2)); 2226007baee2SMatthew G. Knepley } 22279566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreJoin(dm, faceSize, closure, &numCells, &cells)); 2228efa14ee0SMatthew G Knepley } 22299566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dm, cell, PETSC_TRUE, &closureSize, &closure)); 2230efa14ee0SMatthew G Knepley } 22319566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dm, vertex, PETSC_FALSE, &starSize, &star)); 2232efa14ee0SMatthew G Knepley } 2233efa14ee0SMatthew G Knepley if (subvertexIS) { 22349566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(subvertexIS, &subvertices)); 2235efa14ee0SMatthew G Knepley } 22369566063dSJacob Faibussowitsch PetscCall(ISDestroy(&subvertexIS)); 22379566063dSJacob Faibussowitsch PetscCall(PetscFree2(pStart, pEnd)); 2238efa14ee0SMatthew G Knepley PetscFunctionReturn(0); 2239efa14ee0SMatthew G Knepley } 2240efa14ee0SMatthew G Knepley 2241158acfadSMatthew G. Knepley static PetscErrorCode DMPlexMarkSubmesh_Interpolated(DM dm, DMLabel vertexLabel, PetscInt value, PetscBool markedFaces, DMLabel subpointMap, DM subdm) 2242efa14ee0SMatthew G Knepley { 224334b4c39eSMatthew G. Knepley IS subvertexIS = NULL; 2244efa14ee0SMatthew G Knepley const PetscInt *subvertices; 2245412e9a14SMatthew G. Knepley PetscInt *pStart, *pEnd; 2246efa14ee0SMatthew G Knepley PetscInt dim, d, numSubVerticesInitial = 0, v; 2247efa14ee0SMatthew G Knepley 2248efa14ee0SMatthew G Knepley PetscFunctionBegin; 22499566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 22509566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(dim+1, &pStart, dim+1, &pEnd)); 2251efa14ee0SMatthew G Knepley for (d = 0; d <= dim; ++d) { 22529566063dSJacob Faibussowitsch PetscCall(DMPlexGetSimplexOrBoxCells(dm, dim-d, &pStart[d], &pEnd[d])); 2253efa14ee0SMatthew G Knepley } 2254efa14ee0SMatthew G Knepley /* Loop over initial vertices and mark all faces in the collective star() */ 225534b4c39eSMatthew G. Knepley if (vertexLabel) { 22569566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(vertexLabel, value, &subvertexIS)); 2257efa14ee0SMatthew G Knepley if (subvertexIS) { 22589566063dSJacob Faibussowitsch PetscCall(ISGetSize(subvertexIS, &numSubVerticesInitial)); 22599566063dSJacob Faibussowitsch PetscCall(ISGetIndices(subvertexIS, &subvertices)); 2260efa14ee0SMatthew G Knepley } 226134b4c39eSMatthew G. Knepley } 2262efa14ee0SMatthew G Knepley for (v = 0; v < numSubVerticesInitial; ++v) { 2263efa14ee0SMatthew G Knepley const PetscInt vertex = subvertices[v]; 22640298fd71SBarry Smith PetscInt *star = NULL; 2265efa14ee0SMatthew G Knepley PetscInt starSize, s, numFaces = 0, f; 2266efa14ee0SMatthew G Knepley 22679566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(dm, vertex, PETSC_FALSE, &starSize, &star)); 2268efa14ee0SMatthew G Knepley for (s = 0; s < starSize*2; s += 2) { 2269efa14ee0SMatthew G Knepley const PetscInt point = star[s]; 2270158acfadSMatthew G. Knepley PetscInt faceLoc; 2271158acfadSMatthew G. Knepley 2272158acfadSMatthew G. Knepley if ((point >= pStart[dim-1]) && (point < pEnd[dim-1])) { 2273158acfadSMatthew G. Knepley if (markedFaces) { 22749566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(vertexLabel, point, &faceLoc)); 2275158acfadSMatthew G. Knepley if (faceLoc < 0) continue; 2276158acfadSMatthew G. Knepley } 2277158acfadSMatthew G. Knepley star[numFaces++] = point; 2278158acfadSMatthew G. Knepley } 2279efa14ee0SMatthew G Knepley } 2280efa14ee0SMatthew G Knepley for (f = 0; f < numFaces; ++f) { 2281efa14ee0SMatthew G Knepley const PetscInt face = star[f]; 22820298fd71SBarry Smith PetscInt *closure = NULL; 2283efa14ee0SMatthew G Knepley PetscInt closureSize, c; 2284efa14ee0SMatthew G Knepley PetscInt faceLoc; 2285efa14ee0SMatthew G Knepley 22869566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(subpointMap, face, &faceLoc)); 2287efa14ee0SMatthew G Knepley if (faceLoc == dim-1) continue; 2288*08401ef6SPierre Jolivet PetscCheck(faceLoc < 0,PetscObjectComm((PetscObject)dm), PETSC_ERR_PLIB, "Face %d has dimension %d in the surface label", face, faceLoc); 22899566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(dm, face, PETSC_TRUE, &closureSize, &closure)); 2290efa14ee0SMatthew G Knepley for (c = 0; c < closureSize*2; c += 2) { 2291efa14ee0SMatthew G Knepley const PetscInt point = closure[c]; 2292efa14ee0SMatthew G Knepley PetscInt vertexLoc; 2293efa14ee0SMatthew G Knepley 2294efa14ee0SMatthew G Knepley if ((point >= pStart[0]) && (point < pEnd[0])) { 22959566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(vertexLabel, point, &vertexLoc)); 2296830e53efSMatthew G. Knepley if (vertexLoc != value) break; 2297efa14ee0SMatthew G Knepley } 2298efa14ee0SMatthew G Knepley } 2299efa14ee0SMatthew G Knepley if (c == closureSize*2) { 2300efa14ee0SMatthew G Knepley const PetscInt *support; 2301efa14ee0SMatthew G Knepley PetscInt supportSize, s; 2302efa14ee0SMatthew G Knepley 2303efa14ee0SMatthew G Knepley for (c = 0; c < closureSize*2; c += 2) { 2304efa14ee0SMatthew G Knepley const PetscInt point = closure[c]; 2305efa14ee0SMatthew G Knepley 2306efa14ee0SMatthew G Knepley for (d = 0; d < dim; ++d) { 2307efa14ee0SMatthew G Knepley if ((point >= pStart[d]) && (point < pEnd[d])) { 23089566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(subpointMap, point, d)); 2309efa14ee0SMatthew G Knepley break; 2310efa14ee0SMatthew G Knepley } 2311efa14ee0SMatthew G Knepley } 2312efa14ee0SMatthew G Knepley } 23139566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dm, face, &supportSize)); 23149566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(dm, face, &support)); 2315efa14ee0SMatthew G Knepley for (s = 0; s < supportSize; ++s) { 23169566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(subpointMap, support[s], dim)); 2317efa14ee0SMatthew G Knepley } 2318efa14ee0SMatthew G Knepley } 23199566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dm, face, PETSC_TRUE, &closureSize, &closure)); 2320efa14ee0SMatthew G Knepley } 23219566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dm, vertex, PETSC_FALSE, &starSize, &star)); 2322efa14ee0SMatthew G Knepley } 23239566063dSJacob Faibussowitsch if (subvertexIS) PetscCall(ISRestoreIndices(subvertexIS, &subvertices)); 23249566063dSJacob Faibussowitsch PetscCall(ISDestroy(&subvertexIS)); 23259566063dSJacob Faibussowitsch PetscCall(PetscFree2(pStart, pEnd)); 2326efa14ee0SMatthew G Knepley PetscFunctionReturn(0); 2327efa14ee0SMatthew G Knepley } 2328efa14ee0SMatthew G Knepley 232927c04023SMatthew G. Knepley static PetscErrorCode DMPlexMarkCohesiveSubmesh_Uninterpolated(DM dm, PetscBool hasLagrange, const char labelname[], PetscInt value, DMLabel subpointMap, PetscInt *numFaces, PetscInt *nFV, PetscInt *subCells[], DM subdm) 2330766ab985SMatthew G. Knepley { 233127c04023SMatthew G. Knepley DMLabel label = NULL; 2332766ab985SMatthew G. Knepley const PetscInt *cone; 23339fc93327SToby Isaac PetscInt dim, cMax, cEnd, c, subc = 0, p, coneSize = -1; 2334766ab985SMatthew G. Knepley 2335812bfc34SJed Brown PetscFunctionBegin; 2336c0ed958bSJed Brown *numFaces = 0; 2337c0ed958bSJed Brown *nFV = 0; 23389566063dSJacob Faibussowitsch if (labelname) PetscCall(DMGetLabel(dm, labelname, &label)); 2339fed694aaSMatthew G. Knepley *subCells = NULL; 23409566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 23419566063dSJacob Faibussowitsch PetscCall(DMPlexGetTensorPrismBounds_Internal(dm, dim, &cMax, &cEnd)); 2342766ab985SMatthew G. Knepley if (cMax < 0) PetscFunctionReturn(0); 234327c04023SMatthew G. Knepley if (label) { 234427c04023SMatthew G. Knepley for (c = cMax; c < cEnd; ++c) { 234527c04023SMatthew G. Knepley PetscInt val; 234627c04023SMatthew G. Knepley 23479566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, c, &val)); 234827c04023SMatthew G. Knepley if (val == value) { 234927c04023SMatthew G. Knepley ++(*numFaces); 23509566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, c, &coneSize)); 235127c04023SMatthew G. Knepley } 235227c04023SMatthew G. Knepley } 235327c04023SMatthew G. Knepley } else { 2354766ab985SMatthew G. Knepley *numFaces = cEnd - cMax; 23559566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, cMax, &coneSize)); 235627c04023SMatthew G. Knepley } 23579566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(*numFaces *2, subCells)); 23589fc93327SToby Isaac if (!(*numFaces)) PetscFunctionReturn(0); 23599fc93327SToby Isaac *nFV = hasLagrange ? coneSize/3 : coneSize/2; 2360766ab985SMatthew G. Knepley for (c = cMax; c < cEnd; ++c) { 2361766ab985SMatthew G. Knepley const PetscInt *cells; 2362766ab985SMatthew G. Knepley PetscInt numCells; 2363766ab985SMatthew G. Knepley 236427c04023SMatthew G. Knepley if (label) { 236527c04023SMatthew G. Knepley PetscInt val; 236627c04023SMatthew G. Knepley 23679566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, c, &val)); 236827c04023SMatthew G. Knepley if (val != value) continue; 236927c04023SMatthew G. Knepley } 23709566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, c, &cone)); 2371766ab985SMatthew G. Knepley for (p = 0; p < *nFV; ++p) { 23729566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(subpointMap, cone[p], 0)); 2373766ab985SMatthew G. Knepley } 2374766ab985SMatthew G. Knepley /* Negative face */ 23759566063dSJacob Faibussowitsch PetscCall(DMPlexGetJoin(dm, *nFV, cone, &numCells, &cells)); 237627234c99SMatthew G. Knepley /* Not true in parallel 2377*08401ef6SPierre Jolivet PetscCheck(numCells == 2,PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Cohesive cells should separate two cells"); */ 2378766ab985SMatthew G. Knepley for (p = 0; p < numCells; ++p) { 23799566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(subpointMap, cells[p], 2)); 238027234c99SMatthew G. Knepley (*subCells)[subc++] = cells[p]; 2381766ab985SMatthew G. Knepley } 23829566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreJoin(dm, *nFV, cone, &numCells, &cells)); 2383766ab985SMatthew G. Knepley /* Positive face is not included */ 2384766ab985SMatthew G. Knepley } 2385766ab985SMatthew G. Knepley PetscFunctionReturn(0); 2386766ab985SMatthew G. Knepley } 2387766ab985SMatthew G. Knepley 23883982b651SMatthew G. Knepley static PetscErrorCode DMPlexMarkCohesiveSubmesh_Interpolated(DM dm, DMLabel label, PetscInt value, DMLabel subpointMap, DM subdm) 2389766ab985SMatthew G. Knepley { 2390766ab985SMatthew G. Knepley PetscInt *pStart, *pEnd; 2391766ab985SMatthew G. Knepley PetscInt dim, cMax, cEnd, c, d; 2392766ab985SMatthew G. Knepley 2393812bfc34SJed Brown PetscFunctionBegin; 23949566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 23959566063dSJacob Faibussowitsch PetscCall(DMPlexGetTensorPrismBounds_Internal(dm, dim, &cMax, &cEnd)); 2396766ab985SMatthew G. Knepley if (cMax < 0) PetscFunctionReturn(0); 23979566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(dim+1,&pStart,dim+1,&pEnd)); 23989566063dSJacob Faibussowitsch for (d = 0; d <= dim; ++d) PetscCall(DMPlexGetDepthStratum(dm, d, &pStart[d], &pEnd[d])); 2399766ab985SMatthew G. Knepley for (c = cMax; c < cEnd; ++c) { 2400766ab985SMatthew G. Knepley const PetscInt *cone; 2401766ab985SMatthew G. Knepley PetscInt *closure = NULL; 2402b3154360SMatthew G. Knepley PetscInt fconeSize, coneSize, closureSize, cl, val; 2403766ab985SMatthew G. Knepley 240427c04023SMatthew G. Knepley if (label) { 24059566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, c, &val)); 240627c04023SMatthew G. Knepley if (val != value) continue; 240727c04023SMatthew G. Knepley } 24089566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, c, &coneSize)); 24099566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, c, &cone)); 24109566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, cone[0], &fconeSize)); 24112c71b3e2SJacob Faibussowitsch PetscCheckFalse(coneSize != (fconeSize ? fconeSize : 1) + 2,PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Cohesive cells should separate two cells"); 2412b3154360SMatthew G. Knepley /* Negative face */ 24139566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(dm, cone[0], PETSC_TRUE, &closureSize, &closure)); 2414766ab985SMatthew G. Knepley for (cl = 0; cl < closureSize*2; cl += 2) { 2415766ab985SMatthew G. Knepley const PetscInt point = closure[cl]; 2416766ab985SMatthew G. Knepley 2417766ab985SMatthew G. Knepley for (d = 0; d <= dim; ++d) { 2418766ab985SMatthew G. Knepley if ((point >= pStart[d]) && (point < pEnd[d])) { 24199566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(subpointMap, point, d)); 2420766ab985SMatthew G. Knepley break; 2421766ab985SMatthew G. Knepley } 2422766ab985SMatthew G. Knepley } 2423766ab985SMatthew G. Knepley } 24249566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dm, cone[0], PETSC_TRUE, &closureSize, &closure)); 2425766ab985SMatthew G. Knepley /* Cells -- positive face is not included */ 2426766ab985SMatthew G. Knepley for (cl = 0; cl < 1; ++cl) { 2427766ab985SMatthew G. Knepley const PetscInt *support; 2428766ab985SMatthew G. Knepley PetscInt supportSize, s; 2429766ab985SMatthew G. Knepley 24309566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dm, cone[cl], &supportSize)); 2431*08401ef6SPierre Jolivet /* PetscCheck(supportSize == 2,PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Cohesive faces should separate two cells"); */ 24329566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(dm, cone[cl], &support)); 2433766ab985SMatthew G. Knepley for (s = 0; s < supportSize; ++s) { 24349566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(subpointMap, support[s], dim)); 2435766ab985SMatthew G. Knepley } 2436766ab985SMatthew G. Knepley } 2437766ab985SMatthew G. Knepley } 24389566063dSJacob Faibussowitsch PetscCall(PetscFree2(pStart, pEnd)); 2439766ab985SMatthew G. Knepley PetscFunctionReturn(0); 2440766ab985SMatthew G. Knepley } 2441766ab985SMatthew G. Knepley 2442c08575a3SMatthew G. Knepley static PetscErrorCode DMPlexGetFaceOrientation(DM dm, PetscInt cell, PetscInt numCorners, PetscInt indices[], PetscInt oppositeVertex, PetscInt origVertices[], PetscInt faceVertices[], PetscBool *posOriented) 2443e6ccafaeSMatthew G Knepley { 244482f516ccSBarry Smith MPI_Comm comm; 2445e6ccafaeSMatthew G Knepley PetscBool posOrient = PETSC_FALSE; 2446e6ccafaeSMatthew G Knepley const PetscInt debug = 0; 2447e6ccafaeSMatthew G Knepley PetscInt cellDim, faceSize, f; 2448e6ccafaeSMatthew G Knepley 244982f516ccSBarry Smith PetscFunctionBegin; 24509566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)dm,&comm)); 24519566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &cellDim)); 24529566063dSJacob Faibussowitsch if (debug) PetscCall(PetscPrintf(comm, "cellDim: %d numCorners: %d\n", cellDim, numCorners)); 2453e6ccafaeSMatthew G Knepley 2454ddeab2a6SMatthew G. Knepley if (cellDim == 1 && numCorners == 2) { 2455ddeab2a6SMatthew G. Knepley /* Triangle */ 2456e6ccafaeSMatthew G Knepley faceSize = numCorners-1; 2457e6ccafaeSMatthew G Knepley posOrient = !(oppositeVertex%2) ? PETSC_TRUE : PETSC_FALSE; 2458ddeab2a6SMatthew G. Knepley } else if (cellDim == 2 && numCorners == 3) { 2459ddeab2a6SMatthew G. Knepley /* Triangle */ 2460ddeab2a6SMatthew G. Knepley faceSize = numCorners-1; 2461ddeab2a6SMatthew G. Knepley posOrient = !(oppositeVertex%2) ? PETSC_TRUE : PETSC_FALSE; 2462ddeab2a6SMatthew G. Knepley } else if (cellDim == 3 && numCorners == 4) { 2463ddeab2a6SMatthew G. Knepley /* Tetrahedron */ 2464ddeab2a6SMatthew G. Knepley faceSize = numCorners-1; 2465ddeab2a6SMatthew G. Knepley posOrient = (oppositeVertex%2) ? PETSC_TRUE : PETSC_FALSE; 2466e6ccafaeSMatthew G Knepley } else if (cellDim == 1 && numCorners == 3) { 2467e6ccafaeSMatthew G Knepley /* Quadratic line */ 2468e6ccafaeSMatthew G Knepley faceSize = 1; 2469e6ccafaeSMatthew G Knepley posOrient = PETSC_TRUE; 2470e6ccafaeSMatthew G Knepley } else if (cellDim == 2 && numCorners == 4) { 2471e6ccafaeSMatthew G Knepley /* Quads */ 2472e6ccafaeSMatthew G Knepley faceSize = 2; 2473e6ccafaeSMatthew G Knepley if ((indices[1] > indices[0]) && (indices[1] - indices[0] == 1)) { 2474e6ccafaeSMatthew G Knepley posOrient = PETSC_TRUE; 2475e6ccafaeSMatthew G Knepley } else if ((indices[0] == 3) && (indices[1] == 0)) { 2476e6ccafaeSMatthew G Knepley posOrient = PETSC_TRUE; 2477e6ccafaeSMatthew G Knepley } else { 2478e6ccafaeSMatthew G Knepley if (((indices[0] > indices[1]) && (indices[0] - indices[1] == 1)) || ((indices[0] == 0) && (indices[1] == 3))) { 2479e6ccafaeSMatthew G Knepley posOrient = PETSC_FALSE; 2480e6ccafaeSMatthew G Knepley } else SETERRQ(comm, PETSC_ERR_ARG_WRONG, "Invalid quad crossedge"); 2481e6ccafaeSMatthew G Knepley } 2482e6ccafaeSMatthew G Knepley } else if (cellDim == 2 && numCorners == 6) { 2483e6ccafaeSMatthew G Knepley /* Quadratic triangle (I hate this) */ 2484e6ccafaeSMatthew G Knepley /* Edges are determined by the first 2 vertices (corners of edges) */ 2485e6ccafaeSMatthew G Knepley const PetscInt faceSizeTri = 3; 2486e6ccafaeSMatthew G Knepley PetscInt sortedIndices[3], i, iFace; 2487e6ccafaeSMatthew G Knepley PetscBool found = PETSC_FALSE; 2488e6ccafaeSMatthew G Knepley PetscInt faceVerticesTriSorted[9] = { 2489e6ccafaeSMatthew G Knepley 0, 3, 4, /* bottom */ 2490e6ccafaeSMatthew G Knepley 1, 4, 5, /* right */ 2491e6ccafaeSMatthew G Knepley 2, 3, 5, /* left */ 2492e6ccafaeSMatthew G Knepley }; 2493e6ccafaeSMatthew G Knepley PetscInt faceVerticesTri[9] = { 2494e6ccafaeSMatthew G Knepley 0, 3, 4, /* bottom */ 2495e6ccafaeSMatthew G Knepley 1, 4, 5, /* right */ 2496e6ccafaeSMatthew G Knepley 2, 5, 3, /* left */ 2497e6ccafaeSMatthew G Knepley }; 2498e6ccafaeSMatthew G Knepley 2499e6ccafaeSMatthew G Knepley for (i = 0; i < faceSizeTri; ++i) sortedIndices[i] = indices[i]; 25009566063dSJacob Faibussowitsch PetscCall(PetscSortInt(faceSizeTri, sortedIndices)); 2501e6ccafaeSMatthew G Knepley for (iFace = 0; iFace < 3; ++iFace) { 2502e6ccafaeSMatthew G Knepley const PetscInt ii = iFace*faceSizeTri; 2503e6ccafaeSMatthew G Knepley PetscInt fVertex, cVertex; 2504e6ccafaeSMatthew G Knepley 2505e6ccafaeSMatthew G Knepley if ((sortedIndices[0] == faceVerticesTriSorted[ii+0]) && 2506e6ccafaeSMatthew G Knepley (sortedIndices[1] == faceVerticesTriSorted[ii+1])) { 2507e6ccafaeSMatthew G Knepley for (fVertex = 0; fVertex < faceSizeTri; ++fVertex) { 2508e6ccafaeSMatthew G Knepley for (cVertex = 0; cVertex < faceSizeTri; ++cVertex) { 2509e6ccafaeSMatthew G Knepley if (indices[cVertex] == faceVerticesTri[ii+fVertex]) { 2510e6ccafaeSMatthew G Knepley faceVertices[fVertex] = origVertices[cVertex]; 2511e6ccafaeSMatthew G Knepley break; 2512e6ccafaeSMatthew G Knepley } 2513e6ccafaeSMatthew G Knepley } 2514e6ccafaeSMatthew G Knepley } 2515e6ccafaeSMatthew G Knepley found = PETSC_TRUE; 2516e6ccafaeSMatthew G Knepley break; 2517e6ccafaeSMatthew G Knepley } 2518e6ccafaeSMatthew G Knepley } 251928b400f6SJacob Faibussowitsch PetscCheck(found,comm, PETSC_ERR_ARG_WRONG, "Invalid tri crossface"); 2520e6ccafaeSMatthew G Knepley if (posOriented) *posOriented = PETSC_TRUE; 2521e6ccafaeSMatthew G Knepley PetscFunctionReturn(0); 2522e6ccafaeSMatthew G Knepley } else if (cellDim == 2 && numCorners == 9) { 2523e6ccafaeSMatthew G Knepley /* Quadratic quad (I hate this) */ 2524e6ccafaeSMatthew G Knepley /* Edges are determined by the first 2 vertices (corners of edges) */ 2525e6ccafaeSMatthew G Knepley const PetscInt faceSizeQuad = 3; 2526e6ccafaeSMatthew G Knepley PetscInt sortedIndices[3], i, iFace; 2527e6ccafaeSMatthew G Knepley PetscBool found = PETSC_FALSE; 2528e6ccafaeSMatthew G Knepley PetscInt faceVerticesQuadSorted[12] = { 2529e6ccafaeSMatthew G Knepley 0, 1, 4, /* bottom */ 2530e6ccafaeSMatthew G Knepley 1, 2, 5, /* right */ 2531e6ccafaeSMatthew G Knepley 2, 3, 6, /* top */ 2532e6ccafaeSMatthew G Knepley 0, 3, 7, /* left */ 2533e6ccafaeSMatthew G Knepley }; 2534e6ccafaeSMatthew G Knepley PetscInt faceVerticesQuad[12] = { 2535e6ccafaeSMatthew G Knepley 0, 1, 4, /* bottom */ 2536e6ccafaeSMatthew G Knepley 1, 2, 5, /* right */ 2537e6ccafaeSMatthew G Knepley 2, 3, 6, /* top */ 2538e6ccafaeSMatthew G Knepley 3, 0, 7, /* left */ 2539e6ccafaeSMatthew G Knepley }; 2540e6ccafaeSMatthew G Knepley 2541e6ccafaeSMatthew G Knepley for (i = 0; i < faceSizeQuad; ++i) sortedIndices[i] = indices[i]; 25429566063dSJacob Faibussowitsch PetscCall(PetscSortInt(faceSizeQuad, sortedIndices)); 2543e6ccafaeSMatthew G Knepley for (iFace = 0; iFace < 4; ++iFace) { 2544e6ccafaeSMatthew G Knepley const PetscInt ii = iFace*faceSizeQuad; 2545e6ccafaeSMatthew G Knepley PetscInt fVertex, cVertex; 2546e6ccafaeSMatthew G Knepley 2547e6ccafaeSMatthew G Knepley if ((sortedIndices[0] == faceVerticesQuadSorted[ii+0]) && 2548e6ccafaeSMatthew G Knepley (sortedIndices[1] == faceVerticesQuadSorted[ii+1])) { 2549e6ccafaeSMatthew G Knepley for (fVertex = 0; fVertex < faceSizeQuad; ++fVertex) { 2550e6ccafaeSMatthew G Knepley for (cVertex = 0; cVertex < faceSizeQuad; ++cVertex) { 2551e6ccafaeSMatthew G Knepley if (indices[cVertex] == faceVerticesQuad[ii+fVertex]) { 2552e6ccafaeSMatthew G Knepley faceVertices[fVertex] = origVertices[cVertex]; 2553e6ccafaeSMatthew G Knepley break; 2554e6ccafaeSMatthew G Knepley } 2555e6ccafaeSMatthew G Knepley } 2556e6ccafaeSMatthew G Knepley } 2557e6ccafaeSMatthew G Knepley found = PETSC_TRUE; 2558e6ccafaeSMatthew G Knepley break; 2559e6ccafaeSMatthew G Knepley } 2560e6ccafaeSMatthew G Knepley } 256128b400f6SJacob Faibussowitsch PetscCheck(found,comm, PETSC_ERR_ARG_WRONG, "Invalid quad crossface"); 2562e6ccafaeSMatthew G Knepley if (posOriented) *posOriented = PETSC_TRUE; 2563e6ccafaeSMatthew G Knepley PetscFunctionReturn(0); 2564e6ccafaeSMatthew G Knepley } else if (cellDim == 3 && numCorners == 8) { 2565e6ccafaeSMatthew G Knepley /* Hexes 2566e6ccafaeSMatthew G Knepley A hex is two oriented quads with the normal of the first 2567e6ccafaeSMatthew G Knepley pointing up at the second. 2568e6ccafaeSMatthew G Knepley 2569e6ccafaeSMatthew G Knepley 7---6 2570e6ccafaeSMatthew G Knepley /| /| 2571e6ccafaeSMatthew G Knepley 4---5 | 2572ddeab2a6SMatthew G. Knepley | 1-|-2 2573e6ccafaeSMatthew G Knepley |/ |/ 2574ddeab2a6SMatthew G. Knepley 0---3 2575e6ccafaeSMatthew G Knepley 2576e6ccafaeSMatthew G Knepley Faces are determined by the first 4 vertices (corners of faces) */ 2577e6ccafaeSMatthew G Knepley const PetscInt faceSizeHex = 4; 2578e6ccafaeSMatthew G Knepley PetscInt sortedIndices[4], i, iFace; 2579e6ccafaeSMatthew G Knepley PetscBool found = PETSC_FALSE; 2580e6ccafaeSMatthew G Knepley PetscInt faceVerticesHexSorted[24] = { 2581e6ccafaeSMatthew G Knepley 0, 1, 2, 3, /* bottom */ 2582e6ccafaeSMatthew G Knepley 4, 5, 6, 7, /* top */ 2583ddeab2a6SMatthew G. Knepley 0, 3, 4, 5, /* front */ 2584ddeab2a6SMatthew G. Knepley 2, 3, 5, 6, /* right */ 2585ddeab2a6SMatthew G. Knepley 1, 2, 6, 7, /* back */ 2586ddeab2a6SMatthew G. Knepley 0, 1, 4, 7, /* left */ 2587e6ccafaeSMatthew G Knepley }; 2588e6ccafaeSMatthew G Knepley PetscInt faceVerticesHex[24] = { 2589ddeab2a6SMatthew G. Knepley 1, 2, 3, 0, /* bottom */ 2590e6ccafaeSMatthew G Knepley 4, 5, 6, 7, /* top */ 2591ddeab2a6SMatthew G. Knepley 0, 3, 5, 4, /* front */ 2592ddeab2a6SMatthew G. Knepley 3, 2, 6, 5, /* right */ 2593ddeab2a6SMatthew G. Knepley 2, 1, 7, 6, /* back */ 2594ddeab2a6SMatthew G. Knepley 1, 0, 4, 7, /* left */ 2595e6ccafaeSMatthew G Knepley }; 2596e6ccafaeSMatthew G Knepley 2597e6ccafaeSMatthew G Knepley for (i = 0; i < faceSizeHex; ++i) sortedIndices[i] = indices[i]; 25989566063dSJacob Faibussowitsch PetscCall(PetscSortInt(faceSizeHex, sortedIndices)); 2599e6ccafaeSMatthew G Knepley for (iFace = 0; iFace < 6; ++iFace) { 2600e6ccafaeSMatthew G Knepley const PetscInt ii = iFace*faceSizeHex; 2601e6ccafaeSMatthew G Knepley PetscInt fVertex, cVertex; 2602e6ccafaeSMatthew G Knepley 2603e6ccafaeSMatthew G Knepley if ((sortedIndices[0] == faceVerticesHexSorted[ii+0]) && 2604e6ccafaeSMatthew G Knepley (sortedIndices[1] == faceVerticesHexSorted[ii+1]) && 2605e6ccafaeSMatthew G Knepley (sortedIndices[2] == faceVerticesHexSorted[ii+2]) && 2606e6ccafaeSMatthew G Knepley (sortedIndices[3] == faceVerticesHexSorted[ii+3])) { 2607e6ccafaeSMatthew G Knepley for (fVertex = 0; fVertex < faceSizeHex; ++fVertex) { 2608e6ccafaeSMatthew G Knepley for (cVertex = 0; cVertex < faceSizeHex; ++cVertex) { 2609e6ccafaeSMatthew G Knepley if (indices[cVertex] == faceVerticesHex[ii+fVertex]) { 2610e6ccafaeSMatthew G Knepley faceVertices[fVertex] = origVertices[cVertex]; 2611e6ccafaeSMatthew G Knepley break; 2612e6ccafaeSMatthew G Knepley } 2613e6ccafaeSMatthew G Knepley } 2614e6ccafaeSMatthew G Knepley } 2615e6ccafaeSMatthew G Knepley found = PETSC_TRUE; 2616e6ccafaeSMatthew G Knepley break; 2617e6ccafaeSMatthew G Knepley } 2618e6ccafaeSMatthew G Knepley } 261928b400f6SJacob Faibussowitsch PetscCheck(found,comm, PETSC_ERR_ARG_WRONG, "Invalid hex crossface"); 2620e6ccafaeSMatthew G Knepley if (posOriented) *posOriented = PETSC_TRUE; 2621e6ccafaeSMatthew G Knepley PetscFunctionReturn(0); 2622e6ccafaeSMatthew G Knepley } else if (cellDim == 3 && numCorners == 10) { 2623e6ccafaeSMatthew G Knepley /* Quadratic tet */ 2624e6ccafaeSMatthew G Knepley /* Faces are determined by the first 3 vertices (corners of faces) */ 2625e6ccafaeSMatthew G Knepley const PetscInt faceSizeTet = 6; 2626e6ccafaeSMatthew G Knepley PetscInt sortedIndices[6], i, iFace; 2627e6ccafaeSMatthew G Knepley PetscBool found = PETSC_FALSE; 2628e6ccafaeSMatthew G Knepley PetscInt faceVerticesTetSorted[24] = { 2629e6ccafaeSMatthew G Knepley 0, 1, 2, 6, 7, 8, /* bottom */ 2630e6ccafaeSMatthew G Knepley 0, 3, 4, 6, 7, 9, /* front */ 2631e6ccafaeSMatthew G Knepley 1, 4, 5, 7, 8, 9, /* right */ 2632e6ccafaeSMatthew G Knepley 2, 3, 5, 6, 8, 9, /* left */ 2633e6ccafaeSMatthew G Knepley }; 2634e6ccafaeSMatthew G Knepley PetscInt faceVerticesTet[24] = { 2635e6ccafaeSMatthew G Knepley 0, 1, 2, 6, 7, 8, /* bottom */ 2636e6ccafaeSMatthew G Knepley 0, 4, 3, 6, 7, 9, /* front */ 2637e6ccafaeSMatthew G Knepley 1, 5, 4, 7, 8, 9, /* right */ 2638e6ccafaeSMatthew G Knepley 2, 3, 5, 8, 6, 9, /* left */ 2639e6ccafaeSMatthew G Knepley }; 2640e6ccafaeSMatthew G Knepley 2641e6ccafaeSMatthew G Knepley for (i = 0; i < faceSizeTet; ++i) sortedIndices[i] = indices[i]; 26429566063dSJacob Faibussowitsch PetscCall(PetscSortInt(faceSizeTet, sortedIndices)); 2643e6ccafaeSMatthew G Knepley for (iFace=0; iFace < 4; ++iFace) { 2644e6ccafaeSMatthew G Knepley const PetscInt ii = iFace*faceSizeTet; 2645e6ccafaeSMatthew G Knepley PetscInt fVertex, cVertex; 2646e6ccafaeSMatthew G Knepley 2647e6ccafaeSMatthew G Knepley if ((sortedIndices[0] == faceVerticesTetSorted[ii+0]) && 2648e6ccafaeSMatthew G Knepley (sortedIndices[1] == faceVerticesTetSorted[ii+1]) && 2649e6ccafaeSMatthew G Knepley (sortedIndices[2] == faceVerticesTetSorted[ii+2]) && 2650e6ccafaeSMatthew G Knepley (sortedIndices[3] == faceVerticesTetSorted[ii+3])) { 2651e6ccafaeSMatthew G Knepley for (fVertex = 0; fVertex < faceSizeTet; ++fVertex) { 2652e6ccafaeSMatthew G Knepley for (cVertex = 0; cVertex < faceSizeTet; ++cVertex) { 2653e6ccafaeSMatthew G Knepley if (indices[cVertex] == faceVerticesTet[ii+fVertex]) { 2654e6ccafaeSMatthew G Knepley faceVertices[fVertex] = origVertices[cVertex]; 2655e6ccafaeSMatthew G Knepley break; 2656e6ccafaeSMatthew G Knepley } 2657e6ccafaeSMatthew G Knepley } 2658e6ccafaeSMatthew G Knepley } 2659e6ccafaeSMatthew G Knepley found = PETSC_TRUE; 2660e6ccafaeSMatthew G Knepley break; 2661e6ccafaeSMatthew G Knepley } 2662e6ccafaeSMatthew G Knepley } 266328b400f6SJacob Faibussowitsch PetscCheck(found,comm, PETSC_ERR_ARG_WRONG, "Invalid tet crossface"); 2664e6ccafaeSMatthew G Knepley if (posOriented) *posOriented = PETSC_TRUE; 2665e6ccafaeSMatthew G Knepley PetscFunctionReturn(0); 2666e6ccafaeSMatthew G Knepley } else if (cellDim == 3 && numCorners == 27) { 2667e6ccafaeSMatthew G Knepley /* Quadratic hexes (I hate this) 2668e6ccafaeSMatthew G Knepley A hex is two oriented quads with the normal of the first 2669e6ccafaeSMatthew G Knepley pointing up at the second. 2670e6ccafaeSMatthew G Knepley 2671e6ccafaeSMatthew G Knepley 7---6 2672e6ccafaeSMatthew G Knepley /| /| 2673e6ccafaeSMatthew G Knepley 4---5 | 2674e6ccafaeSMatthew G Knepley | 3-|-2 2675e6ccafaeSMatthew G Knepley |/ |/ 2676e6ccafaeSMatthew G Knepley 0---1 2677e6ccafaeSMatthew G Knepley 2678e6ccafaeSMatthew G Knepley Faces are determined by the first 4 vertices (corners of faces) */ 2679e6ccafaeSMatthew G Knepley const PetscInt faceSizeQuadHex = 9; 2680e6ccafaeSMatthew G Knepley PetscInt sortedIndices[9], i, iFace; 2681e6ccafaeSMatthew G Knepley PetscBool found = PETSC_FALSE; 2682e6ccafaeSMatthew G Knepley PetscInt faceVerticesQuadHexSorted[54] = { 2683e6ccafaeSMatthew G Knepley 0, 1, 2, 3, 8, 9, 10, 11, 24, /* bottom */ 2684e6ccafaeSMatthew G Knepley 4, 5, 6, 7, 12, 13, 14, 15, 25, /* top */ 2685e6ccafaeSMatthew G Knepley 0, 1, 4, 5, 8, 12, 16, 17, 22, /* front */ 2686e6ccafaeSMatthew G Knepley 1, 2, 5, 6, 9, 13, 17, 18, 21, /* right */ 2687e6ccafaeSMatthew G Knepley 2, 3, 6, 7, 10, 14, 18, 19, 23, /* back */ 2688e6ccafaeSMatthew G Knepley 0, 3, 4, 7, 11, 15, 16, 19, 20, /* left */ 2689e6ccafaeSMatthew G Knepley }; 2690e6ccafaeSMatthew G Knepley PetscInt faceVerticesQuadHex[54] = { 2691e6ccafaeSMatthew G Knepley 3, 2, 1, 0, 10, 9, 8, 11, 24, /* bottom */ 2692e6ccafaeSMatthew G Knepley 4, 5, 6, 7, 12, 13, 14, 15, 25, /* top */ 2693e6ccafaeSMatthew G Knepley 0, 1, 5, 4, 8, 17, 12, 16, 22, /* front */ 2694e6ccafaeSMatthew G Knepley 1, 2, 6, 5, 9, 18, 13, 17, 21, /* right */ 2695e6ccafaeSMatthew G Knepley 2, 3, 7, 6, 10, 19, 14, 18, 23, /* back */ 2696e6ccafaeSMatthew G Knepley 3, 0, 4, 7, 11, 16, 15, 19, 20 /* left */ 2697e6ccafaeSMatthew G Knepley }; 2698e6ccafaeSMatthew G Knepley 2699e6ccafaeSMatthew G Knepley for (i = 0; i < faceSizeQuadHex; ++i) sortedIndices[i] = indices[i]; 27009566063dSJacob Faibussowitsch PetscCall(PetscSortInt(faceSizeQuadHex, sortedIndices)); 2701e6ccafaeSMatthew G Knepley for (iFace = 0; iFace < 6; ++iFace) { 2702e6ccafaeSMatthew G Knepley const PetscInt ii = iFace*faceSizeQuadHex; 2703e6ccafaeSMatthew G Knepley PetscInt fVertex, cVertex; 2704e6ccafaeSMatthew G Knepley 2705e6ccafaeSMatthew G Knepley if ((sortedIndices[0] == faceVerticesQuadHexSorted[ii+0]) && 2706e6ccafaeSMatthew G Knepley (sortedIndices[1] == faceVerticesQuadHexSorted[ii+1]) && 2707e6ccafaeSMatthew G Knepley (sortedIndices[2] == faceVerticesQuadHexSorted[ii+2]) && 2708e6ccafaeSMatthew G Knepley (sortedIndices[3] == faceVerticesQuadHexSorted[ii+3])) { 2709e6ccafaeSMatthew G Knepley for (fVertex = 0; fVertex < faceSizeQuadHex; ++fVertex) { 2710e6ccafaeSMatthew G Knepley for (cVertex = 0; cVertex < faceSizeQuadHex; ++cVertex) { 2711e6ccafaeSMatthew G Knepley if (indices[cVertex] == faceVerticesQuadHex[ii+fVertex]) { 2712e6ccafaeSMatthew G Knepley faceVertices[fVertex] = origVertices[cVertex]; 2713e6ccafaeSMatthew G Knepley break; 2714e6ccafaeSMatthew G Knepley } 2715e6ccafaeSMatthew G Knepley } 2716e6ccafaeSMatthew G Knepley } 2717e6ccafaeSMatthew G Knepley found = PETSC_TRUE; 2718e6ccafaeSMatthew G Knepley break; 2719e6ccafaeSMatthew G Knepley } 2720e6ccafaeSMatthew G Knepley } 272128b400f6SJacob Faibussowitsch PetscCheck(found,comm, PETSC_ERR_ARG_WRONG, "Invalid hex crossface"); 2722e6ccafaeSMatthew G Knepley if (posOriented) *posOriented = PETSC_TRUE; 2723e6ccafaeSMatthew G Knepley PetscFunctionReturn(0); 2724e6ccafaeSMatthew G Knepley } else SETERRQ(comm, PETSC_ERR_ARG_WRONG, "Unknown cell type for faceOrientation()."); 2725e6ccafaeSMatthew G Knepley if (!posOrient) { 27269566063dSJacob Faibussowitsch if (debug) PetscCall(PetscPrintf(comm, " Reversing initial face orientation\n")); 2727e6ccafaeSMatthew G Knepley for (f = 0; f < faceSize; ++f) faceVertices[f] = origVertices[faceSize-1 - f]; 2728e6ccafaeSMatthew G Knepley } else { 27299566063dSJacob Faibussowitsch if (debug) PetscCall(PetscPrintf(comm, " Keeping initial face orientation\n")); 2730e6ccafaeSMatthew G Knepley for (f = 0; f < faceSize; ++f) faceVertices[f] = origVertices[f]; 2731e6ccafaeSMatthew G Knepley } 2732e6ccafaeSMatthew G Knepley if (posOriented) *posOriented = posOrient; 2733e6ccafaeSMatthew G Knepley PetscFunctionReturn(0); 2734e6ccafaeSMatthew G Knepley } 2735e6ccafaeSMatthew G Knepley 2736c08575a3SMatthew G. Knepley /*@ 2737c08575a3SMatthew G. Knepley DMPlexGetOrientedFace - Given a cell and a face, as a set of vertices, return the oriented face, as a set of vertices, 2738c08575a3SMatthew G. Knepley in faceVertices. The orientation is such that the face normal points out of the cell 2739c08575a3SMatthew G. Knepley 2740c08575a3SMatthew G. Knepley Not collective 2741c08575a3SMatthew G. Knepley 2742c08575a3SMatthew G. Knepley Input Parameters: 2743c08575a3SMatthew G. Knepley + dm - The original mesh 2744c08575a3SMatthew G. Knepley . cell - The cell mesh point 2745c08575a3SMatthew G. Knepley . faceSize - The number of vertices on the face 2746c08575a3SMatthew G. Knepley . face - The face vertices 2747c08575a3SMatthew G. Knepley . numCorners - The number of vertices on the cell 2748c08575a3SMatthew G. Knepley . indices - Local numbering of face vertices in cell cone 2749c08575a3SMatthew G. Knepley - origVertices - Original face vertices 2750c08575a3SMatthew G. Knepley 2751d8d19677SJose E. Roman Output Parameters: 2752c08575a3SMatthew G. Knepley + faceVertices - The face vertices properly oriented 2753c08575a3SMatthew G. Knepley - posOriented - PETSC_TRUE if the face was oriented with outward normal 2754c08575a3SMatthew G. Knepley 2755c08575a3SMatthew G. Knepley Level: developer 2756c08575a3SMatthew G. Knepley 2757c08575a3SMatthew G. Knepley .seealso: DMPlexGetCone() 2758c08575a3SMatthew G. Knepley @*/ 2759e6ccafaeSMatthew G Knepley PetscErrorCode DMPlexGetOrientedFace(DM dm, PetscInt cell, PetscInt faceSize, const PetscInt face[], PetscInt numCorners, PetscInt indices[], PetscInt origVertices[], PetscInt faceVertices[], PetscBool *posOriented) 2760e6ccafaeSMatthew G Knepley { 27610298fd71SBarry Smith const PetscInt *cone = NULL; 2762e6ccafaeSMatthew G Knepley PetscInt coneSize, v, f, v2; 2763e6ccafaeSMatthew G Knepley PetscInt oppositeVertex = -1; 2764e6ccafaeSMatthew G Knepley 2765e6ccafaeSMatthew G Knepley PetscFunctionBegin; 27669566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, cell, &coneSize)); 27679566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, cell, &cone)); 2768e6ccafaeSMatthew G Knepley for (v = 0, v2 = 0; v < coneSize; ++v) { 2769e6ccafaeSMatthew G Knepley PetscBool found = PETSC_FALSE; 2770e6ccafaeSMatthew G Knepley 2771e6ccafaeSMatthew G Knepley for (f = 0; f < faceSize; ++f) { 2772e6ccafaeSMatthew G Knepley if (face[f] == cone[v]) { 2773e6ccafaeSMatthew G Knepley found = PETSC_TRUE; break; 2774e6ccafaeSMatthew G Knepley } 2775e6ccafaeSMatthew G Knepley } 2776e6ccafaeSMatthew G Knepley if (found) { 2777e6ccafaeSMatthew G Knepley indices[v2] = v; 2778e6ccafaeSMatthew G Knepley origVertices[v2] = cone[v]; 2779e6ccafaeSMatthew G Knepley ++v2; 2780e6ccafaeSMatthew G Knepley } else { 2781e6ccafaeSMatthew G Knepley oppositeVertex = v; 2782e6ccafaeSMatthew G Knepley } 2783e6ccafaeSMatthew G Knepley } 27849566063dSJacob Faibussowitsch PetscCall(DMPlexGetFaceOrientation(dm, cell, numCorners, indices, oppositeVertex, origVertices, faceVertices, posOriented)); 2785e6ccafaeSMatthew G Knepley PetscFunctionReturn(0); 2786e6ccafaeSMatthew G Knepley } 2787e6ccafaeSMatthew G Knepley 2788e6ccafaeSMatthew G Knepley /* 2789cd0c2139SMatthew G Knepley DMPlexInsertFace_Internal - Puts a face into the mesh 2790e6ccafaeSMatthew G Knepley 2791e6ccafaeSMatthew G Knepley Not collective 2792e6ccafaeSMatthew G Knepley 2793e6ccafaeSMatthew G Knepley Input Parameters: 2794e6ccafaeSMatthew G Knepley + dm - The DMPlex 2795e6ccafaeSMatthew G Knepley . numFaceVertex - The number of vertices in the face 2796e6ccafaeSMatthew G Knepley . faceVertices - The vertices in the face for dm 2797e6ccafaeSMatthew G Knepley . subfaceVertices - The vertices in the face for subdm 2798e6ccafaeSMatthew G Knepley . numCorners - The number of vertices in the cell 2799e6ccafaeSMatthew G Knepley . cell - A cell in dm containing the face 2800e6ccafaeSMatthew G Knepley . subcell - A cell in subdm containing the face 2801e6ccafaeSMatthew G Knepley . firstFace - First face in the mesh 2802e6ccafaeSMatthew G Knepley - newFacePoint - Next face in the mesh 2803e6ccafaeSMatthew G Knepley 2804e6ccafaeSMatthew G Knepley Output Parameters: 2805e6ccafaeSMatthew G Knepley . newFacePoint - Contains next face point number on input, updated on output 2806e6ccafaeSMatthew G Knepley 2807e6ccafaeSMatthew G Knepley Level: developer 2808e6ccafaeSMatthew G Knepley */ 2809cd0c2139SMatthew G Knepley static PetscErrorCode DMPlexInsertFace_Internal(DM dm, DM subdm, PetscInt numFaceVertices, const PetscInt faceVertices[], const PetscInt subfaceVertices[], PetscInt numCorners, PetscInt cell, PetscInt subcell, PetscInt firstFace, PetscInt *newFacePoint) 2810e6ccafaeSMatthew G Knepley { 281182f516ccSBarry Smith MPI_Comm comm; 2812e6ccafaeSMatthew G Knepley DM_Plex *submesh = (DM_Plex*) subdm->data; 2813e6ccafaeSMatthew G Knepley const PetscInt *faces; 2814e6ccafaeSMatthew G Knepley PetscInt numFaces, coneSize; 2815e6ccafaeSMatthew G Knepley 2816e6ccafaeSMatthew G Knepley PetscFunctionBegin; 28179566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)dm,&comm)); 28189566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(subdm, subcell, &coneSize)); 2819*08401ef6SPierre Jolivet PetscCheck(coneSize == 1,comm, PETSC_ERR_ARG_OUTOFRANGE, "Cone size of cell %d is %d != 1", cell, coneSize); 2820e6ccafaeSMatthew G Knepley #if 0 2821e6ccafaeSMatthew G Knepley /* Cannot use this because support() has not been constructed yet */ 28229566063dSJacob Faibussowitsch PetscCall(DMPlexGetJoin(subdm, numFaceVertices, subfaceVertices, &numFaces, &faces)); 2823e6ccafaeSMatthew G Knepley #else 2824e6ccafaeSMatthew G Knepley { 2825e6ccafaeSMatthew G Knepley PetscInt f; 2826e6ccafaeSMatthew G Knepley 2827e6ccafaeSMatthew G Knepley numFaces = 0; 28289566063dSJacob Faibussowitsch PetscCall(DMGetWorkArray(subdm, 1, MPIU_INT, (void **) &faces)); 2829e6ccafaeSMatthew G Knepley for (f = firstFace; f < *newFacePoint; ++f) { 2830e6ccafaeSMatthew G Knepley PetscInt dof, off, d; 2831e6ccafaeSMatthew G Knepley 28329566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(submesh->coneSection, f, &dof)); 28339566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(submesh->coneSection, f, &off)); 2834e6ccafaeSMatthew G Knepley /* Yes, I know this is quadratic, but I expect the sizes to be <5 */ 2835e6ccafaeSMatthew G Knepley for (d = 0; d < dof; ++d) { 2836e6ccafaeSMatthew G Knepley const PetscInt p = submesh->cones[off+d]; 2837e6ccafaeSMatthew G Knepley PetscInt v; 2838e6ccafaeSMatthew G Knepley 2839e6ccafaeSMatthew G Knepley for (v = 0; v < numFaceVertices; ++v) { 2840e6ccafaeSMatthew G Knepley if (subfaceVertices[v] == p) break; 2841e6ccafaeSMatthew G Knepley } 2842e6ccafaeSMatthew G Knepley if (v == numFaceVertices) break; 2843e6ccafaeSMatthew G Knepley } 2844e6ccafaeSMatthew G Knepley if (d == dof) { 2845e6ccafaeSMatthew G Knepley numFaces = 1; 2846e6ccafaeSMatthew G Knepley ((PetscInt*) faces)[0] = f; 2847e6ccafaeSMatthew G Knepley } 2848e6ccafaeSMatthew G Knepley } 2849e6ccafaeSMatthew G Knepley } 2850e6ccafaeSMatthew G Knepley #endif 2851*08401ef6SPierre Jolivet PetscCheck(numFaces <= 1,comm, PETSC_ERR_ARG_WRONG, "Vertex set had %d faces, not one", numFaces); 2852e6ccafaeSMatthew G Knepley else if (numFaces == 1) { 2853e6ccafaeSMatthew G Knepley /* Add the other cell neighbor for this face */ 28549566063dSJacob Faibussowitsch PetscCall(DMPlexSetCone(subdm, subcell, faces)); 2855e6ccafaeSMatthew G Knepley } else { 2856e6ccafaeSMatthew G Knepley PetscInt *indices, *origVertices, *orientedVertices, *orientedSubVertices, v, ov; 2857e6ccafaeSMatthew G Knepley PetscBool posOriented; 2858e6ccafaeSMatthew G Knepley 28599566063dSJacob Faibussowitsch PetscCall(DMGetWorkArray(subdm, 4*numFaceVertices * sizeof(PetscInt), MPIU_INT, &orientedVertices)); 2860e6ccafaeSMatthew G Knepley origVertices = &orientedVertices[numFaceVertices]; 2861e6ccafaeSMatthew G Knepley indices = &orientedVertices[numFaceVertices*2]; 2862e6ccafaeSMatthew G Knepley orientedSubVertices = &orientedVertices[numFaceVertices*3]; 28639566063dSJacob Faibussowitsch PetscCall(DMPlexGetOrientedFace(dm, cell, numFaceVertices, faceVertices, numCorners, indices, origVertices, orientedVertices, &posOriented)); 2864e6ccafaeSMatthew G Knepley /* TODO: I know that routine should return a permutation, not the indices */ 2865e6ccafaeSMatthew G Knepley for (v = 0; v < numFaceVertices; ++v) { 2866e6ccafaeSMatthew G Knepley const PetscInt vertex = faceVertices[v], subvertex = subfaceVertices[v]; 2867e6ccafaeSMatthew G Knepley for (ov = 0; ov < numFaceVertices; ++ov) { 2868e6ccafaeSMatthew G Knepley if (orientedVertices[ov] == vertex) { 2869e6ccafaeSMatthew G Knepley orientedSubVertices[ov] = subvertex; 2870e6ccafaeSMatthew G Knepley break; 2871e6ccafaeSMatthew G Knepley } 2872e6ccafaeSMatthew G Knepley } 2873*08401ef6SPierre Jolivet PetscCheck(ov != numFaceVertices,comm, PETSC_ERR_PLIB, "Could not find face vertex %d in orientated set", vertex); 2874e6ccafaeSMatthew G Knepley } 28759566063dSJacob Faibussowitsch PetscCall(DMPlexSetCone(subdm, *newFacePoint, orientedSubVertices)); 28769566063dSJacob Faibussowitsch PetscCall(DMPlexSetCone(subdm, subcell, newFacePoint)); 28779566063dSJacob Faibussowitsch PetscCall(DMRestoreWorkArray(subdm, 4*numFaceVertices * sizeof(PetscInt), MPIU_INT, &orientedVertices)); 2878e6ccafaeSMatthew G Knepley ++(*newFacePoint); 2879e6ccafaeSMatthew G Knepley } 2880ef07cca7SMatthew G. Knepley #if 0 28819566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreJoin(subdm, numFaceVertices, subfaceVertices, &numFaces, &faces)); 2882ef07cca7SMatthew G. Knepley #else 28839566063dSJacob Faibussowitsch PetscCall(DMRestoreWorkArray(subdm, 1, MPIU_INT, (void **) &faces)); 2884ef07cca7SMatthew G. Knepley #endif 2885e6ccafaeSMatthew G Knepley PetscFunctionReturn(0); 2886e6ccafaeSMatthew G Knepley } 2887e6ccafaeSMatthew G Knepley 288853156dfcSMatthew G. Knepley static PetscErrorCode DMPlexCreateSubmesh_Uninterpolated(DM dm, DMLabel vertexLabel, PetscInt value, DM subdm) 2889e6ccafaeSMatthew G Knepley { 289082f516ccSBarry Smith MPI_Comm comm; 289153156dfcSMatthew G. Knepley DMLabel subpointMap; 2892efa14ee0SMatthew G Knepley IS subvertexIS, subcellIS; 2893efa14ee0SMatthew G Knepley const PetscInt *subVertices, *subCells; 2894efa14ee0SMatthew G Knepley PetscInt numSubVertices, firstSubVertex, numSubCells; 2895fed694aaSMatthew G. Knepley PetscInt *subface, maxConeSize, numSubFaces = 0, firstSubFace, newFacePoint, nFV = 0; 2896efa14ee0SMatthew G Knepley PetscInt vStart, vEnd, c, f; 2897e6ccafaeSMatthew G Knepley 2898e6ccafaeSMatthew G Knepley PetscFunctionBegin; 28999566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)dm,&comm)); 2900efa14ee0SMatthew G Knepley /* Create subpointMap which marks the submesh */ 29019566063dSJacob Faibussowitsch PetscCall(DMLabelCreate(PETSC_COMM_SELF, "subpoint_map", &subpointMap)); 29029566063dSJacob Faibussowitsch PetscCall(DMPlexSetSubpointMap(subdm, subpointMap)); 29039566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&subpointMap)); 29049566063dSJacob Faibussowitsch if (vertexLabel) PetscCall(DMPlexMarkSubmesh_Uninterpolated(dm, vertexLabel, value, subpointMap, &numSubFaces, &nFV, subdm)); 2905efa14ee0SMatthew G Knepley /* Setup chart */ 29069566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumSize(subpointMap, 0, &numSubVertices)); 29079566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumSize(subpointMap, 2, &numSubCells)); 29089566063dSJacob Faibussowitsch PetscCall(DMPlexSetChart(subdm, 0, numSubCells+numSubFaces+numSubVertices)); 29099566063dSJacob Faibussowitsch PetscCall(DMPlexSetVTKCellHeight(subdm, 1)); 2910e6ccafaeSMatthew G Knepley /* Set cone sizes */ 2911e6ccafaeSMatthew G Knepley firstSubVertex = numSubCells; 2912efa14ee0SMatthew G Knepley firstSubFace = numSubCells+numSubVertices; 2913e6ccafaeSMatthew G Knepley newFacePoint = firstSubFace; 29149566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(subpointMap, 0, &subvertexIS)); 29159566063dSJacob Faibussowitsch if (subvertexIS) PetscCall(ISGetIndices(subvertexIS, &subVertices)); 29169566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(subpointMap, 2, &subcellIS)); 29179566063dSJacob Faibussowitsch if (subcellIS) PetscCall(ISGetIndices(subcellIS, &subCells)); 2918e6ccafaeSMatthew G Knepley for (c = 0; c < numSubCells; ++c) { 29199566063dSJacob Faibussowitsch PetscCall(DMPlexSetConeSize(subdm, c, 1)); 2920e6ccafaeSMatthew G Knepley } 2921e6ccafaeSMatthew G Knepley for (f = firstSubFace; f < firstSubFace+numSubFaces; ++f) { 29229566063dSJacob Faibussowitsch PetscCall(DMPlexSetConeSize(subdm, f, nFV)); 2923e6ccafaeSMatthew G Knepley } 29249566063dSJacob Faibussowitsch PetscCall(DMSetUp(subdm)); 2925e6ccafaeSMatthew G Knepley /* Create face cones */ 29269566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthStratum(dm, 0, &vStart, &vEnd)); 29279566063dSJacob Faibussowitsch PetscCall(DMPlexGetMaxSizes(dm, &maxConeSize, NULL)); 29289566063dSJacob Faibussowitsch PetscCall(DMGetWorkArray(subdm, maxConeSize, MPIU_INT, (void**) &subface)); 2929e6ccafaeSMatthew G Knepley for (c = 0; c < numSubCells; ++c) { 2930e6ccafaeSMatthew G Knepley const PetscInt cell = subCells[c]; 2931efa14ee0SMatthew G Knepley const PetscInt subcell = c; 29320298fd71SBarry Smith PetscInt *closure = NULL; 2933efa14ee0SMatthew G Knepley PetscInt closureSize, cl, numCorners = 0, faceSize = 0; 2934e6ccafaeSMatthew G Knepley 29359566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(dm, cell, PETSC_TRUE, &closureSize, &closure)); 2936efa14ee0SMatthew G Knepley for (cl = 0; cl < closureSize*2; cl += 2) { 2937efa14ee0SMatthew G Knepley const PetscInt point = closure[cl]; 2938e6ccafaeSMatthew G Knepley PetscInt subVertex; 2939e6ccafaeSMatthew G Knepley 2940efa14ee0SMatthew G Knepley if ((point >= vStart) && (point < vEnd)) { 2941efa14ee0SMatthew G Knepley ++numCorners; 29429566063dSJacob Faibussowitsch PetscCall(PetscFindInt(point, numSubVertices, subVertices, &subVertex)); 2943efa14ee0SMatthew G Knepley if (subVertex >= 0) { 2944efa14ee0SMatthew G Knepley closure[faceSize] = point; 294565560c7fSMatthew G Knepley subface[faceSize] = firstSubVertex+subVertex; 2946e6ccafaeSMatthew G Knepley ++faceSize; 2947e6ccafaeSMatthew G Knepley } 2948e6ccafaeSMatthew G Knepley } 2949e6ccafaeSMatthew G Knepley } 2950*08401ef6SPierre Jolivet PetscCheck(faceSize <= nFV,comm, PETSC_ERR_ARG_WRONG, "Invalid submesh: Too many vertices %d of an element on the surface", faceSize); 2951efa14ee0SMatthew G Knepley if (faceSize == nFV) { 29529566063dSJacob Faibussowitsch PetscCall(DMPlexInsertFace_Internal(dm, subdm, faceSize, closure, subface, numCorners, cell, subcell, firstSubFace, &newFacePoint)); 2953e6ccafaeSMatthew G Knepley } 29549566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dm, cell, PETSC_TRUE, &closureSize, &closure)); 2955e6ccafaeSMatthew G Knepley } 29569566063dSJacob Faibussowitsch PetscCall(DMRestoreWorkArray(subdm, maxConeSize, MPIU_INT, (void**) &subface)); 29579566063dSJacob Faibussowitsch PetscCall(DMPlexSymmetrize(subdm)); 29589566063dSJacob Faibussowitsch PetscCall(DMPlexStratify(subdm)); 2959e6ccafaeSMatthew G Knepley /* Build coordinates */ 2960efa14ee0SMatthew G Knepley { 2961efa14ee0SMatthew G Knepley PetscSection coordSection, subCoordSection; 2962efa14ee0SMatthew G Knepley Vec coordinates, subCoordinates; 2963efa14ee0SMatthew G Knepley PetscScalar *coords, *subCoords; 2964285d324eSMatthew G. Knepley PetscInt numComp, coordSize, v; 296524640c55SToby Isaac const char *name; 2966efa14ee0SMatthew G Knepley 29679566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateSection(dm, &coordSection)); 29689566063dSJacob Faibussowitsch PetscCall(DMGetCoordinatesLocal(dm, &coordinates)); 29699566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateSection(subdm, &subCoordSection)); 29709566063dSJacob Faibussowitsch PetscCall(PetscSectionSetNumFields(subCoordSection, 1)); 29719566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldComponents(coordSection, 0, &numComp)); 29729566063dSJacob Faibussowitsch PetscCall(PetscSectionSetFieldComponents(subCoordSection, 0, numComp)); 29739566063dSJacob Faibussowitsch PetscCall(PetscSectionSetChart(subCoordSection, firstSubVertex, firstSubVertex+numSubVertices)); 2974efa14ee0SMatthew G Knepley for (v = 0; v < numSubVertices; ++v) { 2975efa14ee0SMatthew G Knepley const PetscInt vertex = subVertices[v]; 2976efa14ee0SMatthew G Knepley const PetscInt subvertex = firstSubVertex+v; 2977efa14ee0SMatthew G Knepley PetscInt dof; 2978efa14ee0SMatthew G Knepley 29799566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(coordSection, vertex, &dof)); 29809566063dSJacob Faibussowitsch PetscCall(PetscSectionSetDof(subCoordSection, subvertex, dof)); 29819566063dSJacob Faibussowitsch PetscCall(PetscSectionSetFieldDof(subCoordSection, subvertex, 0, dof)); 2982e6ccafaeSMatthew G Knepley } 29839566063dSJacob Faibussowitsch PetscCall(PetscSectionSetUp(subCoordSection)); 29849566063dSJacob Faibussowitsch PetscCall(PetscSectionGetStorageSize(subCoordSection, &coordSize)); 29859566063dSJacob Faibussowitsch PetscCall(VecCreate(PETSC_COMM_SELF, &subCoordinates)); 29869566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)coordinates,&name)); 29879566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)subCoordinates,name)); 29889566063dSJacob Faibussowitsch PetscCall(VecSetSizes(subCoordinates, coordSize, PETSC_DETERMINE)); 29899566063dSJacob Faibussowitsch PetscCall(VecSetType(subCoordinates,VECSTANDARD)); 2990830e53efSMatthew G. Knepley if (coordSize) { 29919566063dSJacob Faibussowitsch PetscCall(VecGetArray(coordinates, &coords)); 29929566063dSJacob Faibussowitsch PetscCall(VecGetArray(subCoordinates, &subCoords)); 2993efa14ee0SMatthew G Knepley for (v = 0; v < numSubVertices; ++v) { 2994efa14ee0SMatthew G Knepley const PetscInt vertex = subVertices[v]; 2995efa14ee0SMatthew G Knepley const PetscInt subvertex = firstSubVertex+v; 2996efa14ee0SMatthew G Knepley PetscInt dof, off, sdof, soff, d; 2997e6ccafaeSMatthew G Knepley 29989566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(coordSection, vertex, &dof)); 29999566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(coordSection, vertex, &off)); 30009566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(subCoordSection, subvertex, &sdof)); 30019566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(subCoordSection, subvertex, &soff)); 3002*08401ef6SPierre Jolivet PetscCheck(dof == sdof,comm, PETSC_ERR_PLIB, "Coordinate dimension %d on subvertex %d, vertex %d should be %d", sdof, subvertex, vertex, dof); 3003e6ccafaeSMatthew G Knepley for (d = 0; d < dof; ++d) subCoords[soff+d] = coords[off+d]; 3004e6ccafaeSMatthew G Knepley } 30059566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(coordinates, &coords)); 30069566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(subCoordinates, &subCoords)); 30073b399e24SMatthew G. Knepley } 30089566063dSJacob Faibussowitsch PetscCall(DMSetCoordinatesLocal(subdm, subCoordinates)); 30099566063dSJacob Faibussowitsch PetscCall(VecDestroy(&subCoordinates)); 3010e6ccafaeSMatthew G Knepley } 3011efa14ee0SMatthew G Knepley /* Cleanup */ 30129566063dSJacob Faibussowitsch if (subvertexIS) PetscCall(ISRestoreIndices(subvertexIS, &subVertices)); 30139566063dSJacob Faibussowitsch PetscCall(ISDestroy(&subvertexIS)); 30149566063dSJacob Faibussowitsch if (subcellIS) PetscCall(ISRestoreIndices(subcellIS, &subCells)); 30159566063dSJacob Faibussowitsch PetscCall(ISDestroy(&subcellIS)); 3016e6ccafaeSMatthew G Knepley PetscFunctionReturn(0); 3017e6ccafaeSMatthew G Knepley } 3018e6ccafaeSMatthew G Knepley 30199fbee547SJacob Faibussowitsch static inline PetscInt DMPlexFilterPoint_Internal(PetscInt point, PetscInt firstSubPoint, PetscInt numSubPoints, const PetscInt subPoints[]) 30203982b651SMatthew G. Knepley { 30213982b651SMatthew G. Knepley PetscInt subPoint; 30223982b651SMatthew G. Knepley PetscErrorCode ierr; 30233982b651SMatthew G. Knepley 30243982b651SMatthew G. Knepley ierr = PetscFindInt(point, numSubPoints, subPoints, &subPoint); if (ierr < 0) return ierr; 30253982b651SMatthew G. Knepley return subPoint < 0 ? subPoint : firstSubPoint+subPoint; 30263982b651SMatthew G. Knepley } 30273982b651SMatthew G. Knepley 3028212103e5SMatthew Knepley static PetscErrorCode DMPlexFilterLabels_Internal(DM dm, const PetscInt numSubPoints[], const PetscInt *subpoints[], const PetscInt firstSubPoint[], DM subdm) 3029212103e5SMatthew Knepley { 3030212103e5SMatthew Knepley PetscInt Nl, l, d; 3031212103e5SMatthew Knepley 3032212103e5SMatthew Knepley PetscFunctionBegin; 30339566063dSJacob Faibussowitsch PetscCall(DMGetNumLabels(dm, &Nl)); 3034212103e5SMatthew Knepley for (l = 0; l < Nl; ++l) { 3035212103e5SMatthew Knepley DMLabel label, newlabel; 3036212103e5SMatthew Knepley const char *lname; 3037d56405f8SMatthew G. Knepley PetscBool isDepth, isDim, isCelltype, isVTK; 3038212103e5SMatthew Knepley IS valueIS; 3039212103e5SMatthew Knepley const PetscInt *values; 3040212103e5SMatthew Knepley PetscInt Nv, v; 3041212103e5SMatthew Knepley 30429566063dSJacob Faibussowitsch PetscCall(DMGetLabelName(dm, l, &lname)); 30439566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(lname, "depth", &isDepth)); 30449566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(lname, "dim", &isDim)); 30459566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(lname, "celltype", &isCelltype)); 30469566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(lname, "vtk", &isVTK)); 3047d56405f8SMatthew G. Knepley if (isDepth || isDim || isCelltype || isVTK) continue; 30489566063dSJacob Faibussowitsch PetscCall(DMCreateLabel(subdm, lname)); 30499566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, lname, &label)); 30509566063dSJacob Faibussowitsch PetscCall(DMGetLabel(subdm, lname, &newlabel)); 30519566063dSJacob Faibussowitsch PetscCall(DMLabelGetDefaultValue(label, &v)); 30529566063dSJacob Faibussowitsch PetscCall(DMLabelSetDefaultValue(newlabel, v)); 30539566063dSJacob Faibussowitsch PetscCall(DMLabelGetValueIS(label, &valueIS)); 30549566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(valueIS, &Nv)); 30559566063dSJacob Faibussowitsch PetscCall(ISGetIndices(valueIS, &values)); 3056212103e5SMatthew Knepley for (v = 0; v < Nv; ++v) { 3057212103e5SMatthew Knepley IS pointIS; 3058212103e5SMatthew Knepley const PetscInt *points; 3059212103e5SMatthew Knepley PetscInt Np, p; 3060212103e5SMatthew Knepley 30619566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(label, values[v], &pointIS)); 30629566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(pointIS, &Np)); 30639566063dSJacob Faibussowitsch PetscCall(ISGetIndices(pointIS, &points)); 3064212103e5SMatthew Knepley for (p = 0; p < Np; ++p) { 3065212103e5SMatthew Knepley const PetscInt point = points[p]; 3066212103e5SMatthew Knepley PetscInt subp; 3067212103e5SMatthew Knepley 30689566063dSJacob Faibussowitsch PetscCall(DMPlexGetPointDepth(dm, point, &d)); 3069212103e5SMatthew Knepley subp = DMPlexFilterPoint_Internal(point, firstSubPoint[d], numSubPoints[d], subpoints[d]); 30709566063dSJacob Faibussowitsch if (subp >= 0) PetscCall(DMLabelSetValue(newlabel, subp, values[v])); 3071212103e5SMatthew Knepley } 30729566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(pointIS, &points)); 30739566063dSJacob Faibussowitsch PetscCall(ISDestroy(&pointIS)); 3074212103e5SMatthew Knepley } 30759566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(valueIS, &values)); 30769566063dSJacob Faibussowitsch PetscCall(ISDestroy(&valueIS)); 3077212103e5SMatthew Knepley } 3078212103e5SMatthew Knepley PetscFunctionReturn(0); 3079212103e5SMatthew Knepley } 3080212103e5SMatthew Knepley 3081158acfadSMatthew G. Knepley static PetscErrorCode DMPlexCreateSubmeshGeneric_Interpolated(DM dm, DMLabel label, PetscInt value, PetscBool markedFaces, PetscBool isCohesive, PetscInt cellHeight, DM subdm) 3082e6ccafaeSMatthew G Knepley { 308382f516ccSBarry Smith MPI_Comm comm; 308453156dfcSMatthew G. Knepley DMLabel subpointMap; 3085efa14ee0SMatthew G Knepley IS *subpointIS; 3086efa14ee0SMatthew G Knepley const PetscInt **subpoints; 30873982b651SMatthew G. Knepley PetscInt *numSubPoints, *firstSubPoint, *coneNew, *orntNew; 3088412e9a14SMatthew G. Knepley PetscInt totSubPoints = 0, maxConeSize, dim, p, d, v; 30890d366550SMatthew G. Knepley PetscMPIInt rank; 3090e6ccafaeSMatthew G Knepley 3091e6ccafaeSMatthew G Knepley PetscFunctionBegin; 30929566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)dm,&comm)); 30939566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 3094efa14ee0SMatthew G Knepley /* Create subpointMap which marks the submesh */ 30959566063dSJacob Faibussowitsch PetscCall(DMLabelCreate(PETSC_COMM_SELF, "subpoint_map", &subpointMap)); 30969566063dSJacob Faibussowitsch PetscCall(DMPlexSetSubpointMap(subdm, subpointMap)); 3097bec263e5SMatthew G. Knepley if (cellHeight) { 30989566063dSJacob Faibussowitsch if (isCohesive) PetscCall(DMPlexMarkCohesiveSubmesh_Interpolated(dm, label, value, subpointMap, subdm)); 30999566063dSJacob Faibussowitsch else PetscCall(DMPlexMarkSubmesh_Interpolated(dm, label, value, markedFaces, subpointMap, subdm)); 3100bec263e5SMatthew G. Knepley } else { 3101bec263e5SMatthew G. Knepley DMLabel depth; 3102bec263e5SMatthew G. Knepley IS pointIS; 3103bec263e5SMatthew G. Knepley const PetscInt *points; 3104b85c8bf9SMatthew G. Knepley PetscInt numPoints=0; 3105bec263e5SMatthew G. Knepley 31069566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthLabel(dm, &depth)); 31079566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(label, value, &pointIS)); 3108b85c8bf9SMatthew G. Knepley if (pointIS) { 31099566063dSJacob Faibussowitsch PetscCall(ISGetIndices(pointIS, &points)); 31109566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(pointIS, &numPoints)); 3111b85c8bf9SMatthew G. Knepley } 3112bec263e5SMatthew G. Knepley for (p = 0; p < numPoints; ++p) { 3113bec263e5SMatthew G. Knepley PetscInt *closure = NULL; 3114bec263e5SMatthew G. Knepley PetscInt closureSize, c, pdim; 3115bec263e5SMatthew G. Knepley 31169566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(dm, points[p], PETSC_TRUE, &closureSize, &closure)); 3117bec263e5SMatthew G. Knepley for (c = 0; c < closureSize*2; c += 2) { 31189566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(depth, closure[c], &pdim)); 31199566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(subpointMap, closure[c], pdim)); 3120bec263e5SMatthew G. Knepley } 31219566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dm, points[p], PETSC_TRUE, &closureSize, &closure)); 3122bec263e5SMatthew G. Knepley } 31239566063dSJacob Faibussowitsch if (pointIS) PetscCall(ISRestoreIndices(pointIS, &points)); 31249566063dSJacob Faibussowitsch PetscCall(ISDestroy(&pointIS)); 3125bec263e5SMatthew G. Knepley } 3126efa14ee0SMatthew G Knepley /* Setup chart */ 31279566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 31289566063dSJacob Faibussowitsch PetscCall(PetscMalloc4(dim+1,&numSubPoints,dim+1,&firstSubPoint,dim+1,&subpointIS,dim+1,&subpoints)); 3129e6ccafaeSMatthew G Knepley for (d = 0; d <= dim; ++d) { 31309566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumSize(subpointMap, d, &numSubPoints[d])); 3131e6ccafaeSMatthew G Knepley totSubPoints += numSubPoints[d]; 3132e6ccafaeSMatthew G Knepley } 31339566063dSJacob Faibussowitsch PetscCall(DMPlexSetChart(subdm, 0, totSubPoints)); 31349566063dSJacob Faibussowitsch PetscCall(DMPlexSetVTKCellHeight(subdm, cellHeight)); 3135e6ccafaeSMatthew G Knepley /* Set cone sizes */ 3136e6ccafaeSMatthew G Knepley firstSubPoint[dim] = 0; 3137e6ccafaeSMatthew G Knepley firstSubPoint[0] = firstSubPoint[dim] + numSubPoints[dim]; 3138e6ccafaeSMatthew G Knepley if (dim > 1) {firstSubPoint[dim-1] = firstSubPoint[0] + numSubPoints[0];} 3139e6ccafaeSMatthew G Knepley if (dim > 2) {firstSubPoint[dim-2] = firstSubPoint[dim-1] + numSubPoints[dim-1];} 3140e6ccafaeSMatthew G Knepley for (d = 0; d <= dim; ++d) { 31419566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(subpointMap, d, &subpointIS[d])); 31429566063dSJacob Faibussowitsch if (subpointIS[d]) PetscCall(ISGetIndices(subpointIS[d], &subpoints[d])); 3143e6ccafaeSMatthew G Knepley } 3144412e9a14SMatthew G. Knepley /* We do not want this label automatically computed, instead we compute it here */ 31459566063dSJacob Faibussowitsch PetscCall(DMCreateLabel(subdm, "celltype")); 3146e6ccafaeSMatthew G Knepley for (d = 0; d <= dim; ++d) { 3147e6ccafaeSMatthew G Knepley for (p = 0; p < numSubPoints[d]; ++p) { 3148e6ccafaeSMatthew G Knepley const PetscInt point = subpoints[d][p]; 3149e6ccafaeSMatthew G Knepley const PetscInt subpoint = firstSubPoint[d] + p; 3150e6ccafaeSMatthew G Knepley const PetscInt *cone; 315115100a53SVaclav Hapla PetscInt coneSize; 3152e6ccafaeSMatthew G Knepley 31539566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, point, &coneSize)); 3154bec263e5SMatthew G. Knepley if (cellHeight && (d == dim)) { 315515100a53SVaclav Hapla PetscInt coneSizeNew, c, val; 315615100a53SVaclav Hapla 31579566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, point, &cone)); 3158e6ccafaeSMatthew G Knepley for (c = 0, coneSizeNew = 0; c < coneSize; ++c) { 31599566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(subpointMap, cone[c], &val)); 3160e6ccafaeSMatthew G Knepley if (val >= 0) coneSizeNew++; 3161e6ccafaeSMatthew G Knepley } 31629566063dSJacob Faibussowitsch PetscCall(DMPlexSetConeSize(subdm, subpoint, coneSizeNew)); 31639566063dSJacob Faibussowitsch PetscCall(DMPlexSetCellType(subdm, subpoint, DM_POLYTOPE_FV_GHOST)); 316415100a53SVaclav Hapla } else { 316515100a53SVaclav Hapla DMPolytopeType ct; 316615100a53SVaclav Hapla 316715100a53SVaclav Hapla PetscCall(DMPlexSetConeSize(subdm, subpoint, coneSize)); 316815100a53SVaclav Hapla PetscCall(DMPlexGetCellType(dm, point, &ct)); 316915100a53SVaclav Hapla PetscCall(DMPlexSetCellType(subdm, subpoint, ct)); 3170e6ccafaeSMatthew G Knepley } 3171e6ccafaeSMatthew G Knepley } 3172e6ccafaeSMatthew G Knepley } 31739566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&subpointMap)); 31749566063dSJacob Faibussowitsch PetscCall(DMSetUp(subdm)); 3175e6ccafaeSMatthew G Knepley /* Set cones */ 31769566063dSJacob Faibussowitsch PetscCall(DMPlexGetMaxSizes(dm, &maxConeSize, NULL)); 31779566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(maxConeSize,&coneNew,maxConeSize,&orntNew)); 3178e6ccafaeSMatthew G Knepley for (d = 0; d <= dim; ++d) { 3179e6ccafaeSMatthew G Knepley for (p = 0; p < numSubPoints[d]; ++p) { 3180e6ccafaeSMatthew G Knepley const PetscInt point = subpoints[d][p]; 3181e6ccafaeSMatthew G Knepley const PetscInt subpoint = firstSubPoint[d] + p; 31820e49e2e2SMatthew G. Knepley const PetscInt *cone, *ornt; 31830d366550SMatthew G. Knepley PetscInt coneSize, subconeSize, coneSizeNew, c, subc, fornt = 0; 3184e6ccafaeSMatthew G Knepley 31850d366550SMatthew G. Knepley if (d == dim-1) { 31860d366550SMatthew G. Knepley const PetscInt *support, *cone, *ornt; 31870d366550SMatthew G. Knepley PetscInt supportSize, coneSize, s, subc; 31880d366550SMatthew G. Knepley 31899566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(dm, point, &support)); 31909566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dm, point, &supportSize)); 31910d366550SMatthew G. Knepley for (s = 0; s < supportSize; ++s) { 3192412e9a14SMatthew G. Knepley PetscBool isHybrid; 3193412e9a14SMatthew G. Knepley 31949566063dSJacob Faibussowitsch PetscCall(DMPlexCellIsHybrid_Internal(dm, support[s], &isHybrid)); 3195412e9a14SMatthew G. Knepley if (!isHybrid) continue; 31969566063dSJacob Faibussowitsch PetscCall(PetscFindInt(support[s], numSubPoints[d+1], subpoints[d+1], &subc)); 31970d366550SMatthew G. Knepley if (subc >= 0) { 31980d366550SMatthew G. Knepley const PetscInt ccell = subpoints[d+1][subc]; 31990d366550SMatthew G. Knepley 32009566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, ccell, &cone)); 32019566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, ccell, &coneSize)); 32029566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeOrientation(dm, ccell, &ornt)); 32030d366550SMatthew G. Knepley for (c = 0; c < coneSize; ++c) { 32040d366550SMatthew G. Knepley if (cone[c] == point) { 32050d366550SMatthew G. Knepley fornt = ornt[c]; 32060d366550SMatthew G. Knepley break; 32070d366550SMatthew G. Knepley } 32080d366550SMatthew G. Knepley } 32090d366550SMatthew G. Knepley break; 32100d366550SMatthew G. Knepley } 32110d366550SMatthew G. Knepley } 32120d366550SMatthew G. Knepley } 32139566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, point, &coneSize)); 32149566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(subdm, subpoint, &subconeSize)); 32159566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, point, &cone)); 32169566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeOrientation(dm, point, &ornt)); 3217e6ccafaeSMatthew G Knepley for (c = 0, coneSizeNew = 0; c < coneSize; ++c) { 32189566063dSJacob Faibussowitsch PetscCall(PetscFindInt(cone[c], numSubPoints[d-1], subpoints[d-1], &subc)); 321901a2673eSMatthew G. Knepley if (subc >= 0) { 322001a2673eSMatthew G. Knepley coneNew[coneSizeNew] = firstSubPoint[d-1] + subc; 32213982b651SMatthew G. Knepley orntNew[coneSizeNew] = ornt[c]; 322201a2673eSMatthew G. Knepley ++coneSizeNew; 322301a2673eSMatthew G. Knepley } 3224e6ccafaeSMatthew G Knepley } 3225*08401ef6SPierre Jolivet PetscCheck(coneSizeNew == subconeSize,comm, PETSC_ERR_PLIB, "Number of cone points located %d does not match subcone size %d", coneSizeNew, subconeSize); 32269566063dSJacob Faibussowitsch PetscCall(DMPlexSetCone(subdm, subpoint, coneNew)); 32279566063dSJacob Faibussowitsch PetscCall(DMPlexSetConeOrientation(subdm, subpoint, orntNew)); 32289566063dSJacob Faibussowitsch if (fornt < 0) PetscCall(DMPlexOrientPoint(subdm, subpoint, fornt)); 3229e6ccafaeSMatthew G Knepley } 3230e6ccafaeSMatthew G Knepley } 32319566063dSJacob Faibussowitsch PetscCall(PetscFree2(coneNew,orntNew)); 32329566063dSJacob Faibussowitsch PetscCall(DMPlexSymmetrize(subdm)); 32339566063dSJacob Faibussowitsch PetscCall(DMPlexStratify(subdm)); 3234e6ccafaeSMatthew G Knepley /* Build coordinates */ 3235e6ccafaeSMatthew G Knepley { 3236e6ccafaeSMatthew G Knepley PetscSection coordSection, subCoordSection; 3237e6ccafaeSMatthew G Knepley Vec coordinates, subCoordinates; 3238e6ccafaeSMatthew G Knepley PetscScalar *coords, *subCoords; 3239c0e8cf5fSMatthew G. Knepley PetscInt cdim, numComp, coordSize; 324024640c55SToby Isaac const char *name; 3241e6ccafaeSMatthew G Knepley 32429566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDim(dm, &cdim)); 32439566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateSection(dm, &coordSection)); 32449566063dSJacob Faibussowitsch PetscCall(DMGetCoordinatesLocal(dm, &coordinates)); 32459566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateSection(subdm, &subCoordSection)); 32469566063dSJacob Faibussowitsch PetscCall(PetscSectionSetNumFields(subCoordSection, 1)); 32479566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldComponents(coordSection, 0, &numComp)); 32489566063dSJacob Faibussowitsch PetscCall(PetscSectionSetFieldComponents(subCoordSection, 0, numComp)); 32499566063dSJacob Faibussowitsch PetscCall(PetscSectionSetChart(subCoordSection, firstSubPoint[0], firstSubPoint[0]+numSubPoints[0])); 3250e6ccafaeSMatthew G Knepley for (v = 0; v < numSubPoints[0]; ++v) { 3251e6ccafaeSMatthew G Knepley const PetscInt vertex = subpoints[0][v]; 3252e6ccafaeSMatthew G Knepley const PetscInt subvertex = firstSubPoint[0]+v; 3253e6ccafaeSMatthew G Knepley PetscInt dof; 3254e6ccafaeSMatthew G Knepley 32559566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(coordSection, vertex, &dof)); 32569566063dSJacob Faibussowitsch PetscCall(PetscSectionSetDof(subCoordSection, subvertex, dof)); 32579566063dSJacob Faibussowitsch PetscCall(PetscSectionSetFieldDof(subCoordSection, subvertex, 0, dof)); 3258e6ccafaeSMatthew G Knepley } 32599566063dSJacob Faibussowitsch PetscCall(PetscSectionSetUp(subCoordSection)); 32609566063dSJacob Faibussowitsch PetscCall(PetscSectionGetStorageSize(subCoordSection, &coordSize)); 32619566063dSJacob Faibussowitsch PetscCall(VecCreate(PETSC_COMM_SELF, &subCoordinates)); 32629566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)coordinates,&name)); 32639566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)subCoordinates,name)); 32649566063dSJacob Faibussowitsch PetscCall(VecSetSizes(subCoordinates, coordSize, PETSC_DETERMINE)); 32659566063dSJacob Faibussowitsch PetscCall(VecSetBlockSize(subCoordinates, cdim)); 32669566063dSJacob Faibussowitsch PetscCall(VecSetType(subCoordinates,VECSTANDARD)); 32679566063dSJacob Faibussowitsch PetscCall(VecGetArray(coordinates, &coords)); 32689566063dSJacob Faibussowitsch PetscCall(VecGetArray(subCoordinates, &subCoords)); 3269e6ccafaeSMatthew G Knepley for (v = 0; v < numSubPoints[0]; ++v) { 3270e6ccafaeSMatthew G Knepley const PetscInt vertex = subpoints[0][v]; 3271e6ccafaeSMatthew G Knepley const PetscInt subvertex = firstSubPoint[0]+v; 3272e6ccafaeSMatthew G Knepley PetscInt dof, off, sdof, soff, d; 3273e6ccafaeSMatthew G Knepley 32749566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(coordSection, vertex, &dof)); 32759566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(coordSection, vertex, &off)); 32769566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(subCoordSection, subvertex, &sdof)); 32779566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(subCoordSection, subvertex, &soff)); 3278*08401ef6SPierre Jolivet PetscCheck(dof == sdof,comm, PETSC_ERR_PLIB, "Coordinate dimension %d on subvertex %d, vertex %d should be %d", sdof, subvertex, vertex, dof); 3279efa14ee0SMatthew G Knepley for (d = 0; d < dof; ++d) subCoords[soff+d] = coords[off+d]; 3280e6ccafaeSMatthew G Knepley } 32819566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(coordinates, &coords)); 32829566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(subCoordinates, &subCoords)); 32839566063dSJacob Faibussowitsch PetscCall(DMSetCoordinatesLocal(subdm, subCoordinates)); 32849566063dSJacob Faibussowitsch PetscCall(VecDestroy(&subCoordinates)); 3285e6ccafaeSMatthew G Knepley } 32863982b651SMatthew G. Knepley /* Build SF: We need this complexity because subpoints might not be selected on the owning process */ 32873982b651SMatthew G. Knepley { 32883982b651SMatthew G. Knepley PetscSF sfPoint, sfPointSub; 32893982b651SMatthew G. Knepley IS subpIS; 32903982b651SMatthew G. Knepley const PetscSFNode *remotePoints; 32913982b651SMatthew G. Knepley PetscSFNode *sremotePoints, *newLocalPoints, *newOwners; 32923982b651SMatthew G. Knepley const PetscInt *localPoints, *subpoints; 32933982b651SMatthew G. Knepley PetscInt *slocalPoints; 32943982b651SMatthew G. Knepley PetscInt numRoots, numLeaves, numSubpoints = 0, numSubroots, numSubleaves = 0, l, sl, ll, pStart, pEnd, p; 32953982b651SMatthew G. Knepley PetscMPIInt rank; 32963982b651SMatthew G. Knepley 32979566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject) dm), &rank)); 32989566063dSJacob Faibussowitsch PetscCall(DMGetPointSF(dm, &sfPoint)); 32999566063dSJacob Faibussowitsch PetscCall(DMGetPointSF(subdm, &sfPointSub)); 33009566063dSJacob Faibussowitsch PetscCall(DMPlexGetChart(dm, &pStart, &pEnd)); 33019566063dSJacob Faibussowitsch PetscCall(DMPlexGetChart(subdm, NULL, &numSubroots)); 33029566063dSJacob Faibussowitsch PetscCall(DMPlexGetSubpointIS(subdm, &subpIS)); 33033982b651SMatthew G. Knepley if (subpIS) { 33049566063dSJacob Faibussowitsch PetscCall(ISGetIndices(subpIS, &subpoints)); 33059566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(subpIS, &numSubpoints)); 33063982b651SMatthew G. Knepley } 33079566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(sfPoint, &numRoots, &numLeaves, &localPoints, &remotePoints)); 33083982b651SMatthew G. Knepley if (numRoots >= 0) { 33099566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(pEnd-pStart,&newLocalPoints,numRoots,&newOwners)); 33103982b651SMatthew G. Knepley for (p = 0; p < pEnd-pStart; ++p) { 33113982b651SMatthew G. Knepley newLocalPoints[p].rank = -2; 33123982b651SMatthew G. Knepley newLocalPoints[p].index = -2; 33133982b651SMatthew G. Knepley } 33143982b651SMatthew G. Knepley /* Set subleaves */ 33153982b651SMatthew G. Knepley for (l = 0; l < numLeaves; ++l) { 33163982b651SMatthew G. Knepley const PetscInt point = localPoints[l]; 33173982b651SMatthew G. Knepley const PetscInt subpoint = DMPlexFilterPoint_Internal(point, 0, numSubpoints, subpoints); 33183982b651SMatthew G. Knepley 33193982b651SMatthew G. Knepley if (subpoint < 0) continue; 33203982b651SMatthew G. Knepley newLocalPoints[point-pStart].rank = rank; 33213982b651SMatthew G. Knepley newLocalPoints[point-pStart].index = subpoint; 33223982b651SMatthew G. Knepley ++numSubleaves; 33233982b651SMatthew G. Knepley } 33243982b651SMatthew G. Knepley /* Must put in owned subpoints */ 33253982b651SMatthew G. Knepley for (p = pStart; p < pEnd; ++p) { 33263982b651SMatthew G. Knepley const PetscInt subpoint = DMPlexFilterPoint_Internal(p, 0, numSubpoints, subpoints); 33273982b651SMatthew G. Knepley 33283982b651SMatthew G. Knepley if (subpoint < 0) { 33293982b651SMatthew G. Knepley newOwners[p-pStart].rank = -3; 33303982b651SMatthew G. Knepley newOwners[p-pStart].index = -3; 33313982b651SMatthew G. Knepley } else { 33323982b651SMatthew G. Knepley newOwners[p-pStart].rank = rank; 33333982b651SMatthew G. Knepley newOwners[p-pStart].index = subpoint; 33343982b651SMatthew G. Knepley } 33353982b651SMatthew G. Knepley } 33369566063dSJacob Faibussowitsch PetscCall(PetscSFReduceBegin(sfPoint, MPIU_2INT, newLocalPoints, newOwners, MPI_MAXLOC)); 33379566063dSJacob Faibussowitsch PetscCall(PetscSFReduceEnd(sfPoint, MPIU_2INT, newLocalPoints, newOwners, MPI_MAXLOC)); 33389566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(sfPoint, MPIU_2INT, newOwners, newLocalPoints,MPI_REPLACE)); 33399566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(sfPoint, MPIU_2INT, newOwners, newLocalPoints,MPI_REPLACE)); 33409566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(numSubleaves, &slocalPoints)); 33419566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(numSubleaves, &sremotePoints)); 33423982b651SMatthew G. Knepley for (l = 0, sl = 0, ll = 0; l < numLeaves; ++l) { 33433982b651SMatthew G. Knepley const PetscInt point = localPoints[l]; 33443982b651SMatthew G. Knepley const PetscInt subpoint = DMPlexFilterPoint_Internal(point, 0, numSubpoints, subpoints); 33453982b651SMatthew G. Knepley 33463982b651SMatthew G. Knepley if (subpoint < 0) continue; 33473982b651SMatthew G. Knepley if (newLocalPoints[point].rank == rank) {++ll; continue;} 33483982b651SMatthew G. Knepley slocalPoints[sl] = subpoint; 33493982b651SMatthew G. Knepley sremotePoints[sl].rank = newLocalPoints[point].rank; 33503982b651SMatthew G. Knepley sremotePoints[sl].index = newLocalPoints[point].index; 3351*08401ef6SPierre Jolivet PetscCheck(sremotePoints[sl].rank >= 0,PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid remote rank for local point %d", point); 3352*08401ef6SPierre Jolivet PetscCheck(sremotePoints[sl].index >= 0,PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid remote subpoint for local point %d", point); 33533982b651SMatthew G. Knepley ++sl; 33543982b651SMatthew G. Knepley } 33552c71b3e2SJacob Faibussowitsch PetscCheckFalse(sl + ll != numSubleaves,PETSC_COMM_SELF, PETSC_ERR_PLIB, "Mismatch in number of subleaves %d + %d != %d", sl, ll, numSubleaves); 33569566063dSJacob Faibussowitsch PetscCall(PetscFree2(newLocalPoints,newOwners)); 33579566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(sfPointSub, numSubroots, sl, slocalPoints, PETSC_OWN_POINTER, sremotePoints, PETSC_OWN_POINTER)); 33583982b651SMatthew G. Knepley } 33593982b651SMatthew G. Knepley if (subpIS) { 33609566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(subpIS, &subpoints)); 33613982b651SMatthew G. Knepley } 33623982b651SMatthew G. Knepley } 3363212103e5SMatthew Knepley /* Filter labels */ 33649566063dSJacob Faibussowitsch PetscCall(DMPlexFilterLabels_Internal(dm, numSubPoints, subpoints, firstSubPoint, subdm)); 3365efa14ee0SMatthew G Knepley /* Cleanup */ 3366e6ccafaeSMatthew G Knepley for (d = 0; d <= dim; ++d) { 33679566063dSJacob Faibussowitsch if (subpointIS[d]) PetscCall(ISRestoreIndices(subpointIS[d], &subpoints[d])); 33689566063dSJacob Faibussowitsch PetscCall(ISDestroy(&subpointIS[d])); 3369e6ccafaeSMatthew G Knepley } 33709566063dSJacob Faibussowitsch PetscCall(PetscFree4(numSubPoints,firstSubPoint,subpointIS,subpoints)); 3371e6ccafaeSMatthew G Knepley PetscFunctionReturn(0); 3372e6ccafaeSMatthew G Knepley } 3373e6ccafaeSMatthew G Knepley 3374158acfadSMatthew G. Knepley static PetscErrorCode DMPlexCreateSubmesh_Interpolated(DM dm, DMLabel vertexLabel, PetscInt value, PetscBool markedFaces, DM subdm) 33753982b651SMatthew G. Knepley { 33763982b651SMatthew G. Knepley PetscFunctionBegin; 33779566063dSJacob Faibussowitsch PetscCall(DMPlexCreateSubmeshGeneric_Interpolated(dm, vertexLabel, value, markedFaces, PETSC_FALSE, 1, subdm)); 33783982b651SMatthew G. Knepley PetscFunctionReturn(0); 33793982b651SMatthew G. Knepley } 33803982b651SMatthew G. Knepley 3381d0fa310fSMatthew G. Knepley /*@ 3382e6ccafaeSMatthew G Knepley DMPlexCreateSubmesh - Extract a hypersurface from the mesh using vertices defined by a label 3383e6ccafaeSMatthew G Knepley 3384e6ccafaeSMatthew G Knepley Input Parameters: 3385e6ccafaeSMatthew G Knepley + dm - The original mesh 3386158acfadSMatthew G. Knepley . vertexLabel - The DMLabel marking points contained in the surface 3387158acfadSMatthew G. Knepley . value - The label value to use 3388158acfadSMatthew G. Knepley - markedFaces - PETSC_TRUE if surface faces are marked in addition to vertices, PETSC_FALSE if only vertices are marked 3389e6ccafaeSMatthew G Knepley 3390e6ccafaeSMatthew G Knepley Output Parameter: 3391e6ccafaeSMatthew G Knepley . subdm - The surface mesh 3392e6ccafaeSMatthew G Knepley 3393e6ccafaeSMatthew G Knepley Note: This function produces a DMLabel mapping original points in the submesh to their depth. This can be obtained using DMPlexGetSubpointMap(). 3394e6ccafaeSMatthew G Knepley 3395e6ccafaeSMatthew G Knepley Level: developer 3396e6ccafaeSMatthew G Knepley 3397c58f1c22SToby Isaac .seealso: DMPlexGetSubpointMap(), DMGetLabel(), DMLabelSetValue() 3398830e53efSMatthew G. Knepley @*/ 3399158acfadSMatthew G. Knepley PetscErrorCode DMPlexCreateSubmesh(DM dm, DMLabel vertexLabel, PetscInt value, PetscBool markedFaces, DM *subdm) 3400e6ccafaeSMatthew G Knepley { 3401827c4036SVaclav Hapla DMPlexInterpolatedFlag interpolated; 3402827c4036SVaclav Hapla PetscInt dim, cdim; 3403e6ccafaeSMatthew G Knepley 3404e6ccafaeSMatthew G Knepley PetscFunctionBegin; 3405e6ccafaeSMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 3406064a246eSJacob Faibussowitsch PetscValidPointer(subdm, 5); 34079566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 34089566063dSJacob Faibussowitsch PetscCall(DMCreate(PetscObjectComm((PetscObject)dm), subdm)); 34099566063dSJacob Faibussowitsch PetscCall(DMSetType(*subdm, DMPLEX)); 34109566063dSJacob Faibussowitsch PetscCall(DMSetDimension(*subdm, dim-1)); 34119566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDim(dm, &cdim)); 34129566063dSJacob Faibussowitsch PetscCall(DMSetCoordinateDim(*subdm, cdim)); 34139566063dSJacob Faibussowitsch PetscCall(DMPlexIsInterpolated(dm, &interpolated)); 3414*08401ef6SPierre Jolivet PetscCheck(interpolated != DMPLEX_INTERPOLATED_PARTIAL,PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Not for partially interpolated meshes"); 3415827c4036SVaclav Hapla if (interpolated) { 34169566063dSJacob Faibussowitsch PetscCall(DMPlexCreateSubmesh_Interpolated(dm, vertexLabel, value, markedFaces, *subdm)); 3417e6ccafaeSMatthew G Knepley } else { 34189566063dSJacob Faibussowitsch PetscCall(DMPlexCreateSubmesh_Uninterpolated(dm, vertexLabel, value, *subdm)); 3419e6ccafaeSMatthew G Knepley } 34209566063dSJacob Faibussowitsch PetscCall(DMPlexCopy_Internal(dm, PETSC_TRUE, *subdm)); 3421e6ccafaeSMatthew G Knepley PetscFunctionReturn(0); 3422e6ccafaeSMatthew G Knepley } 3423e6ccafaeSMatthew G Knepley 342427c04023SMatthew G. Knepley static PetscErrorCode DMPlexCreateCohesiveSubmesh_Uninterpolated(DM dm, PetscBool hasLagrange, const char label[], PetscInt value, DM subdm) 3425766ab985SMatthew G. Knepley { 3426766ab985SMatthew G. Knepley MPI_Comm comm; 3427766ab985SMatthew G. Knepley DMLabel subpointMap; 3428766ab985SMatthew G. Knepley IS subvertexIS; 3429766ab985SMatthew G. Knepley const PetscInt *subVertices; 3430fed694aaSMatthew G. Knepley PetscInt numSubVertices, firstSubVertex, numSubCells, *subCells = NULL; 3431766ab985SMatthew G. Knepley PetscInt *subface, maxConeSize, numSubFaces, firstSubFace, newFacePoint, nFV; 3432412e9a14SMatthew G. Knepley PetscInt c, f; 3433766ab985SMatthew G. Knepley 3434766ab985SMatthew G. Knepley PetscFunctionBegin; 34359566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)dm, &comm)); 3436766ab985SMatthew G. Knepley /* Create subpointMap which marks the submesh */ 34379566063dSJacob Faibussowitsch PetscCall(DMLabelCreate(PETSC_COMM_SELF, "subpoint_map", &subpointMap)); 34389566063dSJacob Faibussowitsch PetscCall(DMPlexSetSubpointMap(subdm, subpointMap)); 34399566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&subpointMap)); 34409566063dSJacob Faibussowitsch PetscCall(DMPlexMarkCohesiveSubmesh_Uninterpolated(dm, hasLagrange, label, value, subpointMap, &numSubFaces, &nFV, &subCells, subdm)); 3441766ab985SMatthew G. Knepley /* Setup chart */ 34429566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumSize(subpointMap, 0, &numSubVertices)); 34439566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumSize(subpointMap, 2, &numSubCells)); 34449566063dSJacob Faibussowitsch PetscCall(DMPlexSetChart(subdm, 0, numSubCells+numSubFaces+numSubVertices)); 34459566063dSJacob Faibussowitsch PetscCall(DMPlexSetVTKCellHeight(subdm, 1)); 3446766ab985SMatthew G. Knepley /* Set cone sizes */ 3447766ab985SMatthew G. Knepley firstSubVertex = numSubCells; 3448766ab985SMatthew G. Knepley firstSubFace = numSubCells+numSubVertices; 3449766ab985SMatthew G. Knepley newFacePoint = firstSubFace; 34509566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(subpointMap, 0, &subvertexIS)); 34519566063dSJacob Faibussowitsch if (subvertexIS) PetscCall(ISGetIndices(subvertexIS, &subVertices)); 3452766ab985SMatthew G. Knepley for (c = 0; c < numSubCells; ++c) { 34539566063dSJacob Faibussowitsch PetscCall(DMPlexSetConeSize(subdm, c, 1)); 3454766ab985SMatthew G. Knepley } 3455766ab985SMatthew G. Knepley for (f = firstSubFace; f < firstSubFace+numSubFaces; ++f) { 34569566063dSJacob Faibussowitsch PetscCall(DMPlexSetConeSize(subdm, f, nFV)); 3457766ab985SMatthew G. Knepley } 34589566063dSJacob Faibussowitsch PetscCall(DMSetUp(subdm)); 3459766ab985SMatthew G. Knepley /* Create face cones */ 34609566063dSJacob Faibussowitsch PetscCall(DMPlexGetMaxSizes(dm, &maxConeSize, NULL)); 34619566063dSJacob Faibussowitsch PetscCall(DMGetWorkArray(subdm, maxConeSize, MPIU_INT, (void**) &subface)); 3462766ab985SMatthew G. Knepley for (c = 0; c < numSubCells; ++c) { 3463766ab985SMatthew G. Knepley const PetscInt cell = subCells[c]; 3464766ab985SMatthew G. Knepley const PetscInt subcell = c; 346587feddfdSMatthew G. Knepley const PetscInt *cone, *cells; 3466412e9a14SMatthew G. Knepley PetscBool isHybrid; 346787feddfdSMatthew G. Knepley PetscInt numCells, subVertex, p, v; 3468766ab985SMatthew G. Knepley 34699566063dSJacob Faibussowitsch PetscCall(DMPlexCellIsHybrid_Internal(dm, cell, &isHybrid)); 3470412e9a14SMatthew G. Knepley if (!isHybrid) continue; 34719566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, cell, &cone)); 347287feddfdSMatthew G. Knepley for (v = 0; v < nFV; ++v) { 34739566063dSJacob Faibussowitsch PetscCall(PetscFindInt(cone[v], numSubVertices, subVertices, &subVertex)); 347487feddfdSMatthew G. Knepley subface[v] = firstSubVertex+subVertex; 347587feddfdSMatthew G. Knepley } 34769566063dSJacob Faibussowitsch PetscCall(DMPlexSetCone(subdm, newFacePoint, subface)); 34779566063dSJacob Faibussowitsch PetscCall(DMPlexSetCone(subdm, subcell, &newFacePoint)); 34789566063dSJacob Faibussowitsch PetscCall(DMPlexGetJoin(dm, nFV, cone, &numCells, &cells)); 347927234c99SMatthew G. Knepley /* Not true in parallel 3480*08401ef6SPierre Jolivet PetscCheck(numCells == 2,PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Cohesive cells should separate two cells"); */ 348187feddfdSMatthew G. Knepley for (p = 0; p < numCells; ++p) { 348287feddfdSMatthew G. Knepley PetscInt negsubcell; 3483412e9a14SMatthew G. Knepley PetscBool isHybrid; 3484766ab985SMatthew G. Knepley 34859566063dSJacob Faibussowitsch PetscCall(DMPlexCellIsHybrid_Internal(dm, cells[p], &isHybrid)); 3486412e9a14SMatthew G. Knepley if (isHybrid) continue; 348787feddfdSMatthew G. Knepley /* I know this is a crap search */ 348887feddfdSMatthew G. Knepley for (negsubcell = 0; negsubcell < numSubCells; ++negsubcell) { 348987feddfdSMatthew G. Knepley if (subCells[negsubcell] == cells[p]) break; 3490766ab985SMatthew G. Knepley } 3491*08401ef6SPierre Jolivet PetscCheck(negsubcell != numSubCells,PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Could not find negative face neighbor for cohesive cell %d", cell); 34929566063dSJacob Faibussowitsch PetscCall(DMPlexSetCone(subdm, negsubcell, &newFacePoint)); 3493766ab985SMatthew G. Knepley } 34949566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreJoin(dm, nFV, cone, &numCells, &cells)); 349587feddfdSMatthew G. Knepley ++newFacePoint; 3496766ab985SMatthew G. Knepley } 34979566063dSJacob Faibussowitsch PetscCall(DMRestoreWorkArray(subdm, maxConeSize, MPIU_INT, (void**) &subface)); 34989566063dSJacob Faibussowitsch PetscCall(DMPlexSymmetrize(subdm)); 34999566063dSJacob Faibussowitsch PetscCall(DMPlexStratify(subdm)); 3500766ab985SMatthew G. Knepley /* Build coordinates */ 3501766ab985SMatthew G. Knepley { 3502766ab985SMatthew G. Knepley PetscSection coordSection, subCoordSection; 3503766ab985SMatthew G. Knepley Vec coordinates, subCoordinates; 3504766ab985SMatthew G. Knepley PetscScalar *coords, *subCoords; 3505c0e8cf5fSMatthew G. Knepley PetscInt cdim, numComp, coordSize, v; 350624640c55SToby Isaac const char *name; 3507766ab985SMatthew G. Knepley 35089566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDim(dm, &cdim)); 35099566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateSection(dm, &coordSection)); 35109566063dSJacob Faibussowitsch PetscCall(DMGetCoordinatesLocal(dm, &coordinates)); 35119566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateSection(subdm, &subCoordSection)); 35129566063dSJacob Faibussowitsch PetscCall(PetscSectionSetNumFields(subCoordSection, 1)); 35139566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldComponents(coordSection, 0, &numComp)); 35149566063dSJacob Faibussowitsch PetscCall(PetscSectionSetFieldComponents(subCoordSection, 0, numComp)); 35159566063dSJacob Faibussowitsch PetscCall(PetscSectionSetChart(subCoordSection, firstSubVertex, firstSubVertex+numSubVertices)); 3516766ab985SMatthew G. Knepley for (v = 0; v < numSubVertices; ++v) { 3517766ab985SMatthew G. Knepley const PetscInt vertex = subVertices[v]; 3518766ab985SMatthew G. Knepley const PetscInt subvertex = firstSubVertex+v; 3519766ab985SMatthew G. Knepley PetscInt dof; 3520766ab985SMatthew G. Knepley 35219566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(coordSection, vertex, &dof)); 35229566063dSJacob Faibussowitsch PetscCall(PetscSectionSetDof(subCoordSection, subvertex, dof)); 35239566063dSJacob Faibussowitsch PetscCall(PetscSectionSetFieldDof(subCoordSection, subvertex, 0, dof)); 3524766ab985SMatthew G. Knepley } 35259566063dSJacob Faibussowitsch PetscCall(PetscSectionSetUp(subCoordSection)); 35269566063dSJacob Faibussowitsch PetscCall(PetscSectionGetStorageSize(subCoordSection, &coordSize)); 35279566063dSJacob Faibussowitsch PetscCall(VecCreate(PETSC_COMM_SELF, &subCoordinates)); 35289566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)coordinates,&name)); 35299566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)subCoordinates,name)); 35309566063dSJacob Faibussowitsch PetscCall(VecSetSizes(subCoordinates, coordSize, PETSC_DETERMINE)); 35319566063dSJacob Faibussowitsch PetscCall(VecSetBlockSize(subCoordinates, cdim)); 35329566063dSJacob Faibussowitsch PetscCall(VecSetType(subCoordinates,VECSTANDARD)); 35339566063dSJacob Faibussowitsch PetscCall(VecGetArray(coordinates, &coords)); 35349566063dSJacob Faibussowitsch PetscCall(VecGetArray(subCoordinates, &subCoords)); 3535766ab985SMatthew G. Knepley for (v = 0; v < numSubVertices; ++v) { 3536766ab985SMatthew G. Knepley const PetscInt vertex = subVertices[v]; 3537766ab985SMatthew G. Knepley const PetscInt subvertex = firstSubVertex+v; 3538766ab985SMatthew G. Knepley PetscInt dof, off, sdof, soff, d; 3539766ab985SMatthew G. Knepley 35409566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(coordSection, vertex, &dof)); 35419566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(coordSection, vertex, &off)); 35429566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(subCoordSection, subvertex, &sdof)); 35439566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(subCoordSection, subvertex, &soff)); 3544*08401ef6SPierre Jolivet PetscCheck(dof == sdof,comm, PETSC_ERR_PLIB, "Coordinate dimension %d on subvertex %d, vertex %d should be %d", sdof, subvertex, vertex, dof); 3545766ab985SMatthew G. Knepley for (d = 0; d < dof; ++d) subCoords[soff+d] = coords[off+d]; 3546766ab985SMatthew G. Knepley } 35479566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(coordinates, &coords)); 35489566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(subCoordinates, &subCoords)); 35499566063dSJacob Faibussowitsch PetscCall(DMSetCoordinatesLocal(subdm, subCoordinates)); 35509566063dSJacob Faibussowitsch PetscCall(VecDestroy(&subCoordinates)); 3551766ab985SMatthew G. Knepley } 3552aca35d17SMatthew G. Knepley /* Build SF */ 3553aca35d17SMatthew G. Knepley CHKMEMQ; 3554aca35d17SMatthew G. Knepley { 3555aca35d17SMatthew G. Knepley PetscSF sfPoint, sfPointSub; 3556aca35d17SMatthew G. Knepley const PetscSFNode *remotePoints; 3557bdcf2095SMatthew G. Knepley PetscSFNode *sremotePoints, *newLocalPoints, *newOwners; 3558aca35d17SMatthew G. Knepley const PetscInt *localPoints; 3559bdcf2095SMatthew G. Knepley PetscInt *slocalPoints; 356049c26ae4SMatthew G. Knepley PetscInt numRoots, numLeaves, numSubRoots = numSubCells+numSubFaces+numSubVertices, numSubLeaves = 0, l, sl, ll, pStart, pEnd, p, vStart, vEnd; 3561bdcf2095SMatthew G. Knepley PetscMPIInt rank; 3562aca35d17SMatthew G. Knepley 35639566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject) dm), &rank)); 35649566063dSJacob Faibussowitsch PetscCall(DMGetPointSF(dm, &sfPoint)); 35659566063dSJacob Faibussowitsch PetscCall(DMGetPointSF(subdm, &sfPointSub)); 35669566063dSJacob Faibussowitsch PetscCall(DMPlexGetChart(dm, &pStart, &pEnd)); 35679566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthStratum(dm, 0, &vStart, &vEnd)); 35689566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(sfPoint, &numRoots, &numLeaves, &localPoints, &remotePoints)); 3569aca35d17SMatthew G. Knepley if (numRoots >= 0) { 3570aca35d17SMatthew G. Knepley /* Only vertices should be shared */ 35719566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(pEnd-pStart,&newLocalPoints,numRoots,&newOwners)); 3572bdcf2095SMatthew G. Knepley for (p = 0; p < pEnd-pStart; ++p) { 3573bdcf2095SMatthew G. Knepley newLocalPoints[p].rank = -2; 3574bdcf2095SMatthew G. Knepley newLocalPoints[p].index = -2; 3575bdcf2095SMatthew G. Knepley } 35769e0823b2SMatthew G. Knepley /* Set subleaves */ 3577aca35d17SMatthew G. Knepley for (l = 0; l < numLeaves; ++l) { 3578aca35d17SMatthew G. Knepley const PetscInt point = localPoints[l]; 3579bdcf2095SMatthew G. Knepley const PetscInt subPoint = DMPlexFilterPoint_Internal(point, firstSubVertex, numSubVertices, subVertices); 3580aca35d17SMatthew G. Knepley 3581*08401ef6SPierre Jolivet PetscCheck(!(point < vStart) || !(point >= vEnd),PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Should not be mapping anything but vertices, %d", point); 3582bdcf2095SMatthew G. Knepley if (subPoint < 0) continue; 3583bdcf2095SMatthew G. Knepley newLocalPoints[point-pStart].rank = rank; 3584bdcf2095SMatthew G. Knepley newLocalPoints[point-pStart].index = subPoint; 3585bdcf2095SMatthew G. Knepley ++numSubLeaves; 3586aca35d17SMatthew G. Knepley } 35879e0823b2SMatthew G. Knepley /* Must put in owned subpoints */ 35889e0823b2SMatthew G. Knepley for (p = pStart; p < pEnd; ++p) { 35899e0823b2SMatthew G. Knepley const PetscInt subPoint = DMPlexFilterPoint_Internal(p, firstSubVertex, numSubVertices, subVertices); 35909e0823b2SMatthew G. Knepley 35919e0823b2SMatthew G. Knepley if (subPoint < 0) { 35929e0823b2SMatthew G. Knepley newOwners[p-pStart].rank = -3; 35939e0823b2SMatthew G. Knepley newOwners[p-pStart].index = -3; 35949e0823b2SMatthew G. Knepley } else { 35959e0823b2SMatthew G. Knepley newOwners[p-pStart].rank = rank; 35969e0823b2SMatthew G. Knepley newOwners[p-pStart].index = subPoint; 35979e0823b2SMatthew G. Knepley } 3598bdcf2095SMatthew G. Knepley } 35999566063dSJacob Faibussowitsch PetscCall(PetscSFReduceBegin(sfPoint, MPIU_2INT, newLocalPoints, newOwners, MPI_MAXLOC)); 36009566063dSJacob Faibussowitsch PetscCall(PetscSFReduceEnd(sfPoint, MPIU_2INT, newLocalPoints, newOwners, MPI_MAXLOC)); 36019566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(sfPoint, MPIU_2INT, newOwners, newLocalPoints,MPI_REPLACE)); 36029566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(sfPoint, MPIU_2INT, newOwners, newLocalPoints,MPI_REPLACE)); 36039566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(numSubLeaves, &slocalPoints)); 36049566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(numSubLeaves, &sremotePoints)); 360549c26ae4SMatthew G. Knepley for (l = 0, sl = 0, ll = 0; l < numLeaves; ++l) { 3606bdcf2095SMatthew G. Knepley const PetscInt point = localPoints[l]; 3607bdcf2095SMatthew G. Knepley const PetscInt subPoint = DMPlexFilterPoint_Internal(point, firstSubVertex, numSubVertices, subVertices); 3608aca35d17SMatthew G. Knepley 3609aca35d17SMatthew G. Knepley if (subPoint < 0) continue; 361049c26ae4SMatthew G. Knepley if (newLocalPoints[point].rank == rank) {++ll; continue;} 3611aca35d17SMatthew G. Knepley slocalPoints[sl] = subPoint; 3612bdcf2095SMatthew G. Knepley sremotePoints[sl].rank = newLocalPoints[point].rank; 3613bdcf2095SMatthew G. Knepley sremotePoints[sl].index = newLocalPoints[point].index; 3614*08401ef6SPierre Jolivet PetscCheck(sremotePoints[sl].rank >= 0,PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid remote rank for local point %d", point); 3615*08401ef6SPierre Jolivet PetscCheck(sremotePoints[sl].index >= 0,PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid remote subpoint for local point %d", point); 3616aca35d17SMatthew G. Knepley ++sl; 3617aca35d17SMatthew G. Knepley } 36189566063dSJacob Faibussowitsch PetscCall(PetscFree2(newLocalPoints,newOwners)); 36192c71b3e2SJacob Faibussowitsch PetscCheckFalse(sl + ll != numSubLeaves,PETSC_COMM_SELF, PETSC_ERR_PLIB, "Mismatch in number of subleaves %d + %d != %d", sl, ll, numSubLeaves); 36209566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(sfPointSub, numSubRoots, sl, slocalPoints, PETSC_OWN_POINTER, sremotePoints, PETSC_OWN_POINTER)); 3621aca35d17SMatthew G. Knepley } 3622aca35d17SMatthew G. Knepley } 3623aca35d17SMatthew G. Knepley CHKMEMQ; 3624766ab985SMatthew G. Knepley /* Cleanup */ 36259566063dSJacob Faibussowitsch if (subvertexIS) PetscCall(ISRestoreIndices(subvertexIS, &subVertices)); 36269566063dSJacob Faibussowitsch PetscCall(ISDestroy(&subvertexIS)); 36279566063dSJacob Faibussowitsch PetscCall(PetscFree(subCells)); 3628766ab985SMatthew G. Knepley PetscFunctionReturn(0); 3629766ab985SMatthew G. Knepley } 3630766ab985SMatthew G. Knepley 36313982b651SMatthew G. Knepley static PetscErrorCode DMPlexCreateCohesiveSubmesh_Interpolated(DM dm, const char labelname[], PetscInt value, DM subdm) 3632766ab985SMatthew G. Knepley { 36333982b651SMatthew G. Knepley DMLabel label = NULL; 3634766ab985SMatthew G. Knepley 3635766ab985SMatthew G. Knepley PetscFunctionBegin; 36369566063dSJacob Faibussowitsch if (labelname) PetscCall(DMGetLabel(dm, labelname, &label)); 36379566063dSJacob Faibussowitsch PetscCall(DMPlexCreateSubmeshGeneric_Interpolated(dm, label, value, PETSC_FALSE, PETSC_TRUE, 1, subdm)); 3638766ab985SMatthew G. Knepley PetscFunctionReturn(0); 3639766ab985SMatthew G. Knepley } 3640766ab985SMatthew G. Knepley 3641c08575a3SMatthew G. Knepley /*@C 36427d2fefb6SMatthew G. Knepley DMPlexCreateCohesiveSubmesh - Extract from a mesh with cohesive cells the hypersurface defined by one face of the cells. Optionally, a Label can be given to restrict the cells. 3643766ab985SMatthew G. Knepley 3644766ab985SMatthew G. Knepley Input Parameters: 3645766ab985SMatthew G. Knepley + dm - The original mesh 364627c04023SMatthew G. Knepley . hasLagrange - The mesh has Lagrange unknowns in the cohesive cells 36477afc1a8bSJed Brown . label - A label name, or NULL 364827c04023SMatthew G. Knepley - value - A label value 3649766ab985SMatthew G. Knepley 3650766ab985SMatthew G. Knepley Output Parameter: 3651766ab985SMatthew G. Knepley . subdm - The surface mesh 3652766ab985SMatthew G. Knepley 3653766ab985SMatthew G. Knepley Note: This function produces a DMLabel mapping original points in the submesh to their depth. This can be obtained using DMPlexGetSubpointMap(). 3654766ab985SMatthew G. Knepley 3655766ab985SMatthew G. Knepley Level: developer 3656766ab985SMatthew G. Knepley 3657766ab985SMatthew G. Knepley .seealso: DMPlexGetSubpointMap(), DMPlexCreateSubmesh() 3658c08575a3SMatthew G. Knepley @*/ 365927c04023SMatthew G. Knepley PetscErrorCode DMPlexCreateCohesiveSubmesh(DM dm, PetscBool hasLagrange, const char label[], PetscInt value, DM *subdm) 3660766ab985SMatthew G. Knepley { 3661c0e8cf5fSMatthew G. Knepley PetscInt dim, cdim, depth; 3662766ab985SMatthew G. Knepley 3663766ab985SMatthew G. Knepley PetscFunctionBegin; 3664766ab985SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 366527c04023SMatthew G. Knepley PetscValidPointer(subdm, 5); 36669566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 36679566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepth(dm, &depth)); 36689566063dSJacob Faibussowitsch PetscCall(DMCreate(PetscObjectComm((PetscObject)dm), subdm)); 36699566063dSJacob Faibussowitsch PetscCall(DMSetType(*subdm, DMPLEX)); 36709566063dSJacob Faibussowitsch PetscCall(DMSetDimension(*subdm, dim-1)); 36719566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDim(dm, &cdim)); 36729566063dSJacob Faibussowitsch PetscCall(DMSetCoordinateDim(*subdm, cdim)); 3673766ab985SMatthew G. Knepley if (depth == dim) { 36749566063dSJacob Faibussowitsch PetscCall(DMPlexCreateCohesiveSubmesh_Interpolated(dm, label, value, *subdm)); 3675766ab985SMatthew G. Knepley } else { 36769566063dSJacob Faibussowitsch PetscCall(DMPlexCreateCohesiveSubmesh_Uninterpolated(dm, hasLagrange, label, value, *subdm)); 3677e6ccafaeSMatthew G Knepley } 36789566063dSJacob Faibussowitsch PetscCall(DMPlexCopy_Internal(dm, PETSC_TRUE, *subdm)); 3679e6ccafaeSMatthew G Knepley PetscFunctionReturn(0); 3680e6ccafaeSMatthew G Knepley } 3681e6ccafaeSMatthew G Knepley 3682bec263e5SMatthew G. Knepley /*@ 3683bec263e5SMatthew G. Knepley DMPlexFilter - Extract a subset of mesh cells defined by a label as a separate mesh 3684bec263e5SMatthew G. Knepley 3685bec263e5SMatthew G. Knepley Input Parameters: 3686bec263e5SMatthew G. Knepley + dm - The original mesh 3687bec263e5SMatthew G. Knepley . cellLabel - The DMLabel marking cells contained in the new mesh 3688bec263e5SMatthew G. Knepley - value - The label value to use 3689bec263e5SMatthew G. Knepley 3690bec263e5SMatthew G. Knepley Output Parameter: 3691bec263e5SMatthew G. Knepley . subdm - The new mesh 3692bec263e5SMatthew G. Knepley 3693bec263e5SMatthew G. Knepley Note: This function produces a DMLabel mapping original points in the submesh to their depth. This can be obtained using DMPlexGetSubpointMap(). 3694bec263e5SMatthew G. Knepley 3695bec263e5SMatthew G. Knepley Level: developer 3696bec263e5SMatthew G. Knepley 3697c58f1c22SToby Isaac .seealso: DMPlexGetSubpointMap(), DMGetLabel(), DMLabelSetValue() 3698bec263e5SMatthew G. Knepley @*/ 3699bec263e5SMatthew G. Knepley PetscErrorCode DMPlexFilter(DM dm, DMLabel cellLabel, PetscInt value, DM *subdm) 3700bec263e5SMatthew G. Knepley { 3701bec263e5SMatthew G. Knepley PetscInt dim; 3702bec263e5SMatthew G. Knepley 3703bec263e5SMatthew G. Knepley PetscFunctionBegin; 3704bec263e5SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 3705064a246eSJacob Faibussowitsch PetscValidPointer(subdm, 4); 37069566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 37079566063dSJacob Faibussowitsch PetscCall(DMCreate(PetscObjectComm((PetscObject) dm), subdm)); 37089566063dSJacob Faibussowitsch PetscCall(DMSetType(*subdm, DMPLEX)); 37099566063dSJacob Faibussowitsch PetscCall(DMSetDimension(*subdm, dim)); 3710bec263e5SMatthew G. Knepley /* Extract submesh in place, could be empty on some procs, could have inconsistency if procs do not both extract a shared cell */ 37119566063dSJacob Faibussowitsch PetscCall(DMPlexCreateSubmeshGeneric_Interpolated(dm, cellLabel, value, PETSC_FALSE, PETSC_FALSE, 0, *subdm)); 37129566063dSJacob Faibussowitsch PetscCall(DMPlexCopy_Internal(dm, PETSC_TRUE, *subdm)); 3713bec263e5SMatthew G. Knepley PetscFunctionReturn(0); 3714bec263e5SMatthew G. Knepley } 3715bec263e5SMatthew G. Knepley 371664beef6dSMatthew G. Knepley /*@ 371764beef6dSMatthew G. Knepley DMPlexGetSubpointMap - Returns a DMLabel with point dimension as values 371864beef6dSMatthew G. Knepley 371964beef6dSMatthew G. Knepley Input Parameter: 372064beef6dSMatthew G. Knepley . dm - The submesh DM 372164beef6dSMatthew G. Knepley 372264beef6dSMatthew G. Knepley Output Parameter: 372364beef6dSMatthew G. Knepley . subpointMap - The DMLabel of all the points from the original mesh in this submesh, or NULL if this is not a submesh 372464beef6dSMatthew G. Knepley 372564beef6dSMatthew G. Knepley Level: developer 372664beef6dSMatthew G. Knepley 372797d8846cSMatthew Knepley .seealso: DMPlexCreateSubmesh(), DMPlexGetSubpointIS() 372864beef6dSMatthew G. Knepley @*/ 3729e6ccafaeSMatthew G Knepley PetscErrorCode DMPlexGetSubpointMap(DM dm, DMLabel *subpointMap) 3730e6ccafaeSMatthew G Knepley { 3731e6ccafaeSMatthew G Knepley PetscFunctionBegin; 3732e6ccafaeSMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 3733e6ccafaeSMatthew G Knepley PetscValidPointer(subpointMap, 2); 373465663942SMatthew G. Knepley *subpointMap = ((DM_Plex*) dm->data)->subpointMap; 3735e6ccafaeSMatthew G Knepley PetscFunctionReturn(0); 3736e6ccafaeSMatthew G Knepley } 3737e6ccafaeSMatthew G Knepley 3738c08575a3SMatthew G. Knepley /*@ 3739c08575a3SMatthew G. Knepley DMPlexSetSubpointMap - Sets the DMLabel with point dimension as values 3740c08575a3SMatthew G. Knepley 3741c08575a3SMatthew G. Knepley Input Parameters: 3742c08575a3SMatthew G. Knepley + dm - The submesh DM 3743c08575a3SMatthew G. Knepley - subpointMap - The DMLabel of all the points from the original mesh in this submesh 3744c08575a3SMatthew G. Knepley 3745c08575a3SMatthew G. Knepley Note: Should normally not be called by the user, since it is set in DMPlexCreateSubmesh() 3746c08575a3SMatthew G. Knepley 3747c08575a3SMatthew G. Knepley Level: developer 3748c08575a3SMatthew G. Knepley 374997d8846cSMatthew Knepley .seealso: DMPlexCreateSubmesh(), DMPlexGetSubpointIS() 3750c08575a3SMatthew G. Knepley @*/ 3751e6ccafaeSMatthew G Knepley PetscErrorCode DMPlexSetSubpointMap(DM dm, DMLabel subpointMap) 3752e6ccafaeSMatthew G Knepley { 3753e6ccafaeSMatthew G Knepley DM_Plex *mesh = (DM_Plex *) dm->data; 3754285d324eSMatthew G. Knepley DMLabel tmp; 3755e6ccafaeSMatthew G Knepley 3756e6ccafaeSMatthew G Knepley PetscFunctionBegin; 3757e6ccafaeSMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 3758285d324eSMatthew G. Knepley tmp = mesh->subpointMap; 3759e6ccafaeSMatthew G Knepley mesh->subpointMap = subpointMap; 37609566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject) mesh->subpointMap)); 37619566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&tmp)); 3762e6ccafaeSMatthew G Knepley PetscFunctionReturn(0); 3763e6ccafaeSMatthew G Knepley } 3764e6ccafaeSMatthew G Knepley 376597d8846cSMatthew Knepley static PetscErrorCode DMPlexCreateSubpointIS_Internal(DM dm, IS *subpointIS) 376697d8846cSMatthew Knepley { 376797d8846cSMatthew Knepley DMLabel spmap; 376897d8846cSMatthew Knepley PetscInt depth, d; 376997d8846cSMatthew Knepley 377097d8846cSMatthew Knepley PetscFunctionBegin; 37719566063dSJacob Faibussowitsch PetscCall(DMPlexGetSubpointMap(dm, &spmap)); 37729566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepth(dm, &depth)); 377397d8846cSMatthew Knepley if (spmap && depth >= 0) { 377497d8846cSMatthew Knepley DM_Plex *mesh = (DM_Plex *) dm->data; 377597d8846cSMatthew Knepley PetscInt *points, *depths; 377697d8846cSMatthew Knepley PetscInt pStart, pEnd, p, off; 377797d8846cSMatthew Knepley 37789566063dSJacob Faibussowitsch PetscCall(DMPlexGetChart(dm, &pStart, &pEnd)); 377928b400f6SJacob Faibussowitsch PetscCheck(!pStart,PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Submeshes must start the point numbering at 0, not %d", pStart); 37809566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(pEnd, &points)); 37819566063dSJacob Faibussowitsch PetscCall(DMGetWorkArray(dm, depth+1, MPIU_INT, &depths)); 378297d8846cSMatthew Knepley depths[0] = depth; 378397d8846cSMatthew Knepley depths[1] = 0; 378497d8846cSMatthew Knepley for (d = 2; d <= depth; ++d) {depths[d] = depth+1 - d;} 378597d8846cSMatthew Knepley for (d = 0, off = 0; d <= depth; ++d) { 378697d8846cSMatthew Knepley const PetscInt dep = depths[d]; 378797d8846cSMatthew Knepley PetscInt depStart, depEnd, n; 378897d8846cSMatthew Knepley 37899566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthStratum(dm, dep, &depStart, &depEnd)); 37909566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumSize(spmap, dep, &n)); 379197d8846cSMatthew Knepley if (((d < 2) && (depth > 1)) || (d == 1)) { /* Only check vertices and cells for now since the map is broken for others */ 3792*08401ef6SPierre Jolivet PetscCheck(n == depEnd-depStart,PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "The number of mapped submesh points %d at depth %d should be %d", n, dep, depEnd-depStart); 379397d8846cSMatthew Knepley } else { 379497d8846cSMatthew Knepley if (!n) { 379597d8846cSMatthew Knepley if (d == 0) { 379697d8846cSMatthew Knepley /* Missing cells */ 379797d8846cSMatthew Knepley for (p = 0; p < depEnd-depStart; ++p, ++off) points[off] = -1; 379897d8846cSMatthew Knepley } else { 379997d8846cSMatthew Knepley /* Missing faces */ 380097d8846cSMatthew Knepley for (p = 0; p < depEnd-depStart; ++p, ++off) points[off] = PETSC_MAX_INT; 380197d8846cSMatthew Knepley } 380297d8846cSMatthew Knepley } 380397d8846cSMatthew Knepley } 380497d8846cSMatthew Knepley if (n) { 380597d8846cSMatthew Knepley IS is; 380697d8846cSMatthew Knepley const PetscInt *opoints; 380797d8846cSMatthew Knepley 38089566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(spmap, dep, &is)); 38099566063dSJacob Faibussowitsch PetscCall(ISGetIndices(is, &opoints)); 381097d8846cSMatthew Knepley for (p = 0; p < n; ++p, ++off) points[off] = opoints[p]; 38119566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(is, &opoints)); 38129566063dSJacob Faibussowitsch PetscCall(ISDestroy(&is)); 381397d8846cSMatthew Knepley } 381497d8846cSMatthew Knepley } 38159566063dSJacob Faibussowitsch PetscCall(DMRestoreWorkArray(dm, depth+1, MPIU_INT, &depths)); 3816*08401ef6SPierre Jolivet PetscCheck(off == pEnd,PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "The number of mapped submesh points %d should be %d", off, pEnd); 38179566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, pEnd, points, PETSC_OWN_POINTER, subpointIS)); 38189566063dSJacob Faibussowitsch PetscCall(PetscObjectStateGet((PetscObject) spmap, &mesh->subpointState)); 381997d8846cSMatthew Knepley } 382097d8846cSMatthew Knepley PetscFunctionReturn(0); 382197d8846cSMatthew Knepley } 382297d8846cSMatthew Knepley 382364beef6dSMatthew G. Knepley /*@ 382497d8846cSMatthew Knepley DMPlexGetSubpointIS - Returns an IS covering the entire subdm chart with the original points as data 3825e6ccafaeSMatthew G Knepley 3826e6ccafaeSMatthew G Knepley Input Parameter: 3827e6ccafaeSMatthew G Knepley . dm - The submesh DM 3828e6ccafaeSMatthew G Knepley 3829e6ccafaeSMatthew G Knepley Output Parameter: 38300298fd71SBarry Smith . subpointIS - The IS of all the points from the original mesh in this submesh, or NULL if this is not a submesh 3831e6ccafaeSMatthew G Knepley 38323982b651SMatthew G. Knepley Note: This IS is guaranteed to be sorted by the construction of the submesh 383364beef6dSMatthew G. Knepley 383464beef6dSMatthew G. Knepley Level: developer 383564beef6dSMatthew G. Knepley 383664beef6dSMatthew G. Knepley .seealso: DMPlexCreateSubmesh(), DMPlexGetSubpointMap() 383764beef6dSMatthew G. Knepley @*/ 383897d8846cSMatthew Knepley PetscErrorCode DMPlexGetSubpointIS(DM dm, IS *subpointIS) 3839e6ccafaeSMatthew G Knepley { 384097d8846cSMatthew Knepley DM_Plex *mesh = (DM_Plex *) dm->data; 384197d8846cSMatthew Knepley DMLabel spmap; 384297d8846cSMatthew Knepley PetscObjectState state; 3843e6ccafaeSMatthew G Knepley 3844e6ccafaeSMatthew G Knepley PetscFunctionBegin; 3845e6ccafaeSMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 3846e6ccafaeSMatthew G Knepley PetscValidPointer(subpointIS, 2); 38479566063dSJacob Faibussowitsch PetscCall(DMPlexGetSubpointMap(dm, &spmap)); 38489566063dSJacob Faibussowitsch PetscCall(PetscObjectStateGet((PetscObject) spmap, &state)); 38499566063dSJacob Faibussowitsch if (state != mesh->subpointState || !mesh->subpointIS) PetscCall(DMPlexCreateSubpointIS_Internal(dm, &mesh->subpointIS)); 385097d8846cSMatthew Knepley *subpointIS = mesh->subpointIS; 3851e6ccafaeSMatthew G Knepley PetscFunctionReturn(0); 3852e6ccafaeSMatthew G Knepley } 3853559a1558SMatthew G. Knepley 3854559a1558SMatthew G. Knepley /*@ 3855a6e0b375SMatthew G. Knepley DMGetEnclosureRelation - Get the relationship between dmA and dmB 3856559a1558SMatthew G. Knepley 3857559a1558SMatthew G. Knepley Input Parameters: 3858a6e0b375SMatthew G. Knepley + dmA - The first DM 3859a6e0b375SMatthew G. Knepley - dmB - The second DM 3860559a1558SMatthew G. Knepley 3861559a1558SMatthew G. Knepley Output Parameter: 3862a6e0b375SMatthew G. Knepley . rel - The relation of dmA to dmB 3863559a1558SMatthew G. Knepley 3864a6e0b375SMatthew G. Knepley Level: intermediate 3865559a1558SMatthew G. Knepley 3866446c23c1SPierre Jolivet .seealso: DMGetEnclosurePoint() 3867559a1558SMatthew G. Knepley @*/ 3868a6e0b375SMatthew G. Knepley PetscErrorCode DMGetEnclosureRelation(DM dmA, DM dmB, DMEnclosureType *rel) 3869559a1558SMatthew G. Knepley { 3870a6e0b375SMatthew G. Knepley DM plexA, plexB, sdm; 3871559a1558SMatthew G. Knepley DMLabel spmap; 3872a6e0b375SMatthew G. Knepley PetscInt pStartA, pEndA, pStartB, pEndB, NpA, NpB; 3873559a1558SMatthew G. Knepley 387444171101SMatthew G. Knepley PetscFunctionBegin; 3875a6e0b375SMatthew G. Knepley PetscValidPointer(rel, 3); 3876a6e0b375SMatthew G. Knepley *rel = DM_ENC_NONE; 3877a6e0b375SMatthew G. Knepley if (!dmA || !dmB) PetscFunctionReturn(0); 3878a6e0b375SMatthew G. Knepley PetscValidHeaderSpecific(dmA, DM_CLASSID, 1); 3879064a246eSJacob Faibussowitsch PetscValidHeaderSpecific(dmB, DM_CLASSID, 2); 3880a6e0b375SMatthew G. Knepley if (dmA == dmB) {*rel = DM_ENC_EQUALITY; PetscFunctionReturn(0);} 38819566063dSJacob Faibussowitsch PetscCall(DMConvert(dmA, DMPLEX, &plexA)); 38829566063dSJacob Faibussowitsch PetscCall(DMConvert(dmB, DMPLEX, &plexB)); 38839566063dSJacob Faibussowitsch PetscCall(DMPlexGetChart(plexA, &pStartA, &pEndA)); 38849566063dSJacob Faibussowitsch PetscCall(DMPlexGetChart(plexB, &pStartB, &pEndB)); 3885a6e0b375SMatthew G. Knepley /* Assumption 1: subDMs have smaller charts than the DMs that they originate from 3886a6e0b375SMatthew G. Knepley - The degenerate case of a subdomain which includes all of the domain on some process can be treated as equality */ 3887a6e0b375SMatthew G. Knepley if ((pStartA == pStartB) && (pEndA == pEndB)) { 3888a6e0b375SMatthew G. Knepley *rel = DM_ENC_EQUALITY; 3889a6e0b375SMatthew G. Knepley goto end; 3890559a1558SMatthew G. Knepley } 3891a6e0b375SMatthew G. Knepley NpA = pEndA - pStartA; 3892a6e0b375SMatthew G. Knepley NpB = pEndB - pStartB; 3893a6e0b375SMatthew G. Knepley if (NpA == NpB) goto end; 3894a6e0b375SMatthew G. Knepley sdm = NpA > NpB ? plexB : plexA; /* The other is the original, enclosing dm */ 38959566063dSJacob Faibussowitsch PetscCall(DMPlexGetSubpointMap(sdm, &spmap)); 3896a6e0b375SMatthew G. Knepley if (!spmap) goto end; 3897a6e0b375SMatthew G. Knepley /* TODO Check the space mapped to by subpointMap is same size as dm */ 3898a6e0b375SMatthew G. Knepley if (NpA > NpB) { 3899a6e0b375SMatthew G. Knepley *rel = DM_ENC_SUPERMESH; 3900a6e0b375SMatthew G. Knepley } else { 3901a6e0b375SMatthew G. Knepley *rel = DM_ENC_SUBMESH; 3902a6e0b375SMatthew G. Knepley } 3903a6e0b375SMatthew G. Knepley end: 39049566063dSJacob Faibussowitsch PetscCall(DMDestroy(&plexA)); 39059566063dSJacob Faibussowitsch PetscCall(DMDestroy(&plexB)); 3906559a1558SMatthew G. Knepley PetscFunctionReturn(0); 3907559a1558SMatthew G. Knepley } 390844171101SMatthew G. Knepley 390944171101SMatthew G. Knepley /*@ 3910a6e0b375SMatthew G. Knepley DMGetEnclosurePoint - Get the point pA in dmA which corresponds to the point pB in dmB 391144171101SMatthew G. Knepley 391244171101SMatthew G. Knepley Input Parameters: 3913a6e0b375SMatthew G. Knepley + dmA - The first DM 3914a6e0b375SMatthew G. Knepley . dmB - The second DM 3915a6e0b375SMatthew G. Knepley . etype - The type of enclosure relation that dmA has to dmB 3916a6e0b375SMatthew G. Knepley - pB - A point of dmB 391744171101SMatthew G. Knepley 391844171101SMatthew G. Knepley Output Parameter: 3919a6e0b375SMatthew G. Knepley . pA - The corresponding point of dmA 392044171101SMatthew G. Knepley 3921a6e0b375SMatthew G. Knepley Level: intermediate 392244171101SMatthew G. Knepley 3923a6e0b375SMatthew G. Knepley .seealso: DMGetEnclosureRelation() 392444171101SMatthew G. Knepley @*/ 3925a6e0b375SMatthew G. Knepley PetscErrorCode DMGetEnclosurePoint(DM dmA, DM dmB, DMEnclosureType etype, PetscInt pB, PetscInt *pA) 392644171101SMatthew G. Knepley { 3927a6e0b375SMatthew G. Knepley DM sdm; 3928a6e0b375SMatthew G. Knepley IS subpointIS; 3929a6e0b375SMatthew G. Knepley const PetscInt *subpoints; 3930a6e0b375SMatthew G. Knepley PetscInt numSubpoints; 393144171101SMatthew G. Knepley 393244171101SMatthew G. Knepley PetscFunctionBegin; 3933a6e0b375SMatthew G. Knepley /* TODO Cache the IS, making it look like an index */ 3934a6e0b375SMatthew G. Knepley switch (etype) { 3935a6e0b375SMatthew G. Knepley case DM_ENC_SUPERMESH: 3936a6e0b375SMatthew G. Knepley sdm = dmB; 39379566063dSJacob Faibussowitsch PetscCall(DMPlexGetSubpointIS(sdm, &subpointIS)); 39389566063dSJacob Faibussowitsch PetscCall(ISGetIndices(subpointIS, &subpoints)); 3939a6e0b375SMatthew G. Knepley *pA = subpoints[pB]; 39409566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(subpointIS, &subpoints)); 3941a6e0b375SMatthew G. Knepley break; 3942a6e0b375SMatthew G. Knepley case DM_ENC_SUBMESH: 3943a6e0b375SMatthew G. Knepley sdm = dmA; 39449566063dSJacob Faibussowitsch PetscCall(DMPlexGetSubpointIS(sdm, &subpointIS)); 39459566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(subpointIS, &numSubpoints)); 39469566063dSJacob Faibussowitsch PetscCall(ISGetIndices(subpointIS, &subpoints)); 39479566063dSJacob Faibussowitsch PetscCall(PetscFindInt(pB, numSubpoints, subpoints, pA)); 3948a6e0b375SMatthew G. Knepley if (*pA < 0) { 39499566063dSJacob Faibussowitsch PetscCall(DMViewFromOptions(dmA, NULL, "-dm_enc_A_view")); 39509566063dSJacob Faibussowitsch PetscCall(DMViewFromOptions(dmB, NULL, "-dm_enc_B_view")); 395198921bdaSJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Point %d not found in submesh", pB); 3952a6e0b375SMatthew G. Knepley } 39539566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(subpointIS, &subpoints)); 3954a6e0b375SMatthew G. Knepley break; 3955a6e0b375SMatthew G. Knepley case DM_ENC_EQUALITY: 3956a6e0b375SMatthew G. Knepley case DM_ENC_NONE: 3957a6e0b375SMatthew G. Knepley *pA = pB;break; 3958a6e0b375SMatthew G. Knepley case DM_ENC_UNKNOWN: 3959a6e0b375SMatthew G. Knepley { 3960a6e0b375SMatthew G. Knepley DMEnclosureType enc; 396144171101SMatthew G. Knepley 39629566063dSJacob Faibussowitsch PetscCall(DMGetEnclosureRelation(dmA, dmB, &enc)); 39639566063dSJacob Faibussowitsch PetscCall(DMGetEnclosurePoint(dmA, dmB, enc, pB, pA)); 3964a6e0b375SMatthew G. Knepley } 3965a6e0b375SMatthew G. Knepley break; 396698921bdaSJacob Faibussowitsch default: SETERRQ(PetscObjectComm((PetscObject) dmA), PETSC_ERR_ARG_OUTOFRANGE, "Invalid enclosure type %d", (int) etype); 396744171101SMatthew G. Knepley } 396844171101SMatthew G. Knepley PetscFunctionReturn(0); 396944171101SMatthew G. Knepley } 3970