1af0996ceSBarry Smith #include <petsc/private/dmpleximpl.h> /*I "petscdmplex.h" I*/ 2c58f1c22SToby Isaac #include <petsc/private/dmlabelimpl.h> /*I "petscdmlabel.h" I*/ 30c312b8eSJed Brown #include <petscsf.h> 4e6ccafaeSMatthew G Knepley 5d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexCellIsHybrid_Internal(DM dm, PetscInt p, PetscBool *isHybrid) 6d71ae5a4SJacob Faibussowitsch { 7412e9a14SMatthew G. Knepley DMPolytopeType ct; 8412e9a14SMatthew G. Knepley 9412e9a14SMatthew G. Knepley PetscFunctionBegin; 109566063dSJacob Faibussowitsch PetscCall(DMPlexGetCellType(dm, p, &ct)); 11412e9a14SMatthew G. Knepley switch (ct) { 12412e9a14SMatthew G. Knepley case DM_POLYTOPE_POINT_PRISM_TENSOR: 13412e9a14SMatthew G. Knepley case DM_POLYTOPE_SEG_PRISM_TENSOR: 14412e9a14SMatthew G. Knepley case DM_POLYTOPE_TRI_PRISM_TENSOR: 15d71ae5a4SJacob Faibussowitsch case DM_POLYTOPE_QUAD_PRISM_TENSOR: 16d71ae5a4SJacob Faibussowitsch *isHybrid = PETSC_TRUE; 17d71ae5a4SJacob Faibussowitsch break; 18d71ae5a4SJacob Faibussowitsch default: 19d71ae5a4SJacob Faibussowitsch *isHybrid = PETSC_FALSE; 20d71ae5a4SJacob Faibussowitsch break; 21412e9a14SMatthew G. Knepley } 223ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 23412e9a14SMatthew G. Knepley } 24412e9a14SMatthew G. Knepley 25d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexGetTensorPrismBounds_Internal(DM dm, PetscInt dim, PetscInt *cStart, PetscInt *cEnd) 26d71ae5a4SJacob Faibussowitsch { 27412e9a14SMatthew G. Knepley DMLabel ctLabel; 28412e9a14SMatthew G. Knepley 29412e9a14SMatthew G. Knepley PetscFunctionBegin; 30412e9a14SMatthew G. Knepley if (cStart) *cStart = -1; 31412e9a14SMatthew G. Knepley if (cEnd) *cEnd = -1; 329566063dSJacob Faibussowitsch PetscCall(DMPlexGetCellTypeLabel(dm, &ctLabel)); 33412e9a14SMatthew G. Knepley switch (dim) { 34d71ae5a4SJacob Faibussowitsch case 1: 35d71ae5a4SJacob Faibussowitsch PetscCall(DMLabelGetStratumBounds(ctLabel, DM_POLYTOPE_POINT_PRISM_TENSOR, cStart, cEnd)); 36d71ae5a4SJacob Faibussowitsch break; 37d71ae5a4SJacob Faibussowitsch case 2: 38d71ae5a4SJacob Faibussowitsch PetscCall(DMLabelGetStratumBounds(ctLabel, DM_POLYTOPE_SEG_PRISM_TENSOR, cStart, cEnd)); 39d71ae5a4SJacob Faibussowitsch break; 40412e9a14SMatthew G. Knepley case 3: 419566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumBounds(ctLabel, DM_POLYTOPE_TRI_PRISM_TENSOR, cStart, cEnd)); 429566063dSJacob Faibussowitsch if (*cStart < 0) PetscCall(DMLabelGetStratumBounds(ctLabel, DM_POLYTOPE_QUAD_PRISM_TENSOR, cStart, cEnd)); 43412e9a14SMatthew G. Knepley break; 44d71ae5a4SJacob Faibussowitsch default: 453ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 46412e9a14SMatthew G. Knepley } 473ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 48412e9a14SMatthew G. Knepley } 49412e9a14SMatthew G. Knepley 50d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexMarkBoundaryFaces_Internal(DM dm, PetscInt val, PetscInt cellHeight, DMLabel label) 51d71ae5a4SJacob Faibussowitsch { 52*41e3e744Sksagiyam PetscInt depth, pStart, pEnd, fStart, fEnd, f, supportSize, nroots = -1, nleaves = -1; 53429fa399SMatthew G. Knepley PetscSF sf; 54*41e3e744Sksagiyam const PetscSFNode *iremote = NULL; 55*41e3e744Sksagiyam const PetscInt *ilocal = NULL; 56*41e3e744Sksagiyam PetscInt *leafData; 5730560a7bSMatthew G. Knepley 5830560a7bSMatthew G. Knepley PetscFunctionBegin; 59*41e3e744Sksagiyam PetscCall(DMPlexGetChart(dm, &pStart, &pEnd)); 60*41e3e744Sksagiyam PetscCall(DMPlexGetDepth(dm, &depth)); 61*41e3e744Sksagiyam if (depth >= cellHeight + 1) { 629566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(dm, cellHeight + 1, &fStart, &fEnd)); 63*41e3e744Sksagiyam } else { 64*41e3e744Sksagiyam /* Note DMPlexGetHeightStratum() returns fStart, fEnd = pStart, pEnd */ 65*41e3e744Sksagiyam /* if height > depth, which is not what we want here. */ 66*41e3e744Sksagiyam fStart = 0; 67*41e3e744Sksagiyam fEnd = 0; 68*41e3e744Sksagiyam } 69*41e3e744Sksagiyam PetscCall(PetscCalloc1(pEnd - pStart, &leafData)); 70*41e3e744Sksagiyam leafData -= pStart; 71*41e3e744Sksagiyam PetscCall(DMGetPointSF(dm, &sf)); 72*41e3e744Sksagiyam if (sf) PetscCall(PetscSFGetGraph(sf, &nroots, &nleaves, &ilocal, &iremote)); 73*41e3e744Sksagiyam if (sf && nroots >= 0) { 74*41e3e744Sksagiyam PetscInt cStart, cEnd, c, i; 75*41e3e744Sksagiyam PetscInt *rootData, *rootData1, *cellOwners, hasTwoSupportCells = -2; 76*41e3e744Sksagiyam const PetscInt *support; 77*41e3e744Sksagiyam PetscMPIInt rank; 7830560a7bSMatthew G. Knepley 79*41e3e744Sksagiyam PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)dm), &rank)); 80*41e3e744Sksagiyam PetscCall(DMPlexGetHeightStratum(dm, cellHeight, &cStart, &cEnd)); 81*41e3e744Sksagiyam PetscCall(PetscCalloc3(pEnd - pStart, &rootData, pEnd - pStart, &rootData1, cEnd - cStart, &cellOwners)); 82*41e3e744Sksagiyam rootData -= pStart; 83*41e3e744Sksagiyam rootData1 -= pStart; 84*41e3e744Sksagiyam for (c = cStart; c < cEnd; ++c) cellOwners[c - cStart] = (PetscInt)rank; 85*41e3e744Sksagiyam for (i = 0; i < nleaves; ++i) { 86*41e3e744Sksagiyam c = ilocal ? ilocal[i] : i; 87*41e3e744Sksagiyam if (c >= cStart && c < cEnd) cellOwners[c - cStart] = iremote[i].rank; 88*41e3e744Sksagiyam } 89*41e3e744Sksagiyam for (f = fStart; f < fEnd; ++f) { 909566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dm, f, &supportSize)); 91e752be1aSMatthew G. Knepley if (supportSize == 1) { 92*41e3e744Sksagiyam PetscCall(DMPlexGetSupport(dm, f, &support)); 93*41e3e744Sksagiyam leafData[f] = cellOwners[support[0] - cStart]; 94*41e3e744Sksagiyam } else { 95*41e3e744Sksagiyam /* TODO: When using DMForest, we could have a parent facet (a coarse facet) */ 96*41e3e744Sksagiyam /* supportSize of which alone does not tell us if it is an interior */ 97*41e3e744Sksagiyam /* facet or an exterior facet. Those facets can be identified by checking */ 98*41e3e744Sksagiyam /* if they are in the parent tree. We should probably skip those parent */ 99*41e3e744Sksagiyam /* facets here, which will allow for including the following check, and */ 100*41e3e744Sksagiyam /* see if they are exterior facets or not afterwards by checking if the */ 101*41e3e744Sksagiyam /* children are exterior or not. */ 102*41e3e744Sksagiyam /* PetscCheck(supportSize == 2, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid facet support size (%" PetscInt_FMT ") on facet (%" PetscInt_FMT ")", supportSize, f); */ 103*41e3e744Sksagiyam leafData[f] = hasTwoSupportCells; /* some negative PetscInt */ 104429fa399SMatthew G. Knepley } 105*41e3e744Sksagiyam rootData[f] = leafData[f]; 106*41e3e744Sksagiyam rootData1[f] = leafData[f]; 107*41e3e744Sksagiyam } 108*41e3e744Sksagiyam PetscCall(PetscSFReduceBegin(sf, MPIU_INT, leafData, rootData, MPI_MIN)); 109*41e3e744Sksagiyam PetscCall(PetscSFReduceBegin(sf, MPIU_INT, leafData, rootData1, MPI_MAX)); 110*41e3e744Sksagiyam PetscCall(PetscSFReduceEnd(sf, MPIU_INT, leafData, rootData, MPI_MIN)); 111*41e3e744Sksagiyam PetscCall(PetscSFReduceEnd(sf, MPIU_INT, leafData, rootData1, MPI_MAX)); 112*41e3e744Sksagiyam for (f = fStart; f < fEnd; ++f) { 113*41e3e744Sksagiyam /* Store global support size of f. */ 114*41e3e744Sksagiyam /* Facet f is an interior facet if and only if one of the following two is satisfied: */ 115*41e3e744Sksagiyam /* 1. supportSize is 2 on some rank. */ 116*41e3e744Sksagiyam /* 2. supportSize is 1 on any rank that can see f, but f is on a partition boundary; */ 117*41e3e744Sksagiyam /* i.e., rootData[f] < rootData1[f]. */ 118*41e3e744Sksagiyam rootData[f] = (rootData[f] == hasTwoSupportCells || (rootData[f] < rootData1[f])) ? 2 : 1; 119*41e3e744Sksagiyam leafData[f] = rootData[f]; 120*41e3e744Sksagiyam } 121*41e3e744Sksagiyam PetscCall(PetscSFBcastBegin(sf, MPIU_INT, rootData, leafData, MPI_REPLACE)); 122*41e3e744Sksagiyam PetscCall(PetscSFBcastEnd(sf, MPIU_INT, rootData, leafData, MPI_REPLACE)); 123*41e3e744Sksagiyam rootData += pStart; 124*41e3e744Sksagiyam rootData1 += pStart; 125*41e3e744Sksagiyam PetscCall(PetscFree3(rootData, rootData1, cellOwners)); 126*41e3e744Sksagiyam } else { 127*41e3e744Sksagiyam for (f = fStart; f < fEnd; ++f) { 128*41e3e744Sksagiyam PetscCall(DMPlexGetSupportSize(dm, f, &supportSize)); 129*41e3e744Sksagiyam leafData[f] = supportSize; 130*41e3e744Sksagiyam } 131*41e3e744Sksagiyam } 132*41e3e744Sksagiyam for (f = fStart; f < fEnd; ++f) { 133*41e3e744Sksagiyam if (leafData[f] == 1) { 134e752be1aSMatthew G. Knepley if (val < 0) { 135e752be1aSMatthew G. Knepley PetscInt *closure = NULL; 136e752be1aSMatthew G. Knepley PetscInt clSize, cl, cval; 137e752be1aSMatthew G. Knepley 1389566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(dm, f, PETSC_TRUE, &clSize, &closure)); 139e752be1aSMatthew G. Knepley for (cl = 0; cl < clSize * 2; cl += 2) { 1409566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, closure[cl], &cval)); 141e752be1aSMatthew G. Knepley if (cval < 0) continue; 1429566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(label, f, cval)); 143e752be1aSMatthew G. Knepley break; 144e752be1aSMatthew G. Knepley } 1459566063dSJacob Faibussowitsch if (cl == clSize * 2) PetscCall(DMLabelSetValue(label, f, 1)); 1469566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dm, f, PETSC_TRUE, &clSize, &closure)); 147e752be1aSMatthew G. Knepley } else { 1489566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(label, f, val)); 149e752be1aSMatthew G. Knepley } 150*41e3e744Sksagiyam } else { 151*41e3e744Sksagiyam /* TODO: See the above comment on DMForest */ 152*41e3e744Sksagiyam /* PetscCheck(leafData[f] == 2, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid facet support size (%" PetscInt_FMT ") on facet (%" PetscInt_FMT ")", leafData[f], f); */ 153e752be1aSMatthew G. Knepley } 15430560a7bSMatthew G. Knepley } 155*41e3e744Sksagiyam leafData += pStart; 156*41e3e744Sksagiyam PetscCall(PetscFree(leafData)); 1573ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 15830560a7bSMatthew G. Knepley } 15930560a7bSMatthew G. Knepley 160cd0c2139SMatthew G Knepley /*@ 161cd0c2139SMatthew G Knepley DMPlexMarkBoundaryFaces - Mark all faces on the boundary 162cd0c2139SMatthew G Knepley 163*41e3e744Sksagiyam Collective 164cd0c2139SMatthew G Knepley 165d8d19677SJose E. Roman Input Parameters: 166429fa399SMatthew G. Knepley + dm - The original `DM` 16720f4b53cSBarry Smith - val - The marker value, or `PETSC_DETERMINE` to use some value in the closure (or 1 if none are found) 168cd0c2139SMatthew G Knepley 169cd0c2139SMatthew G Knepley Output Parameter: 17020f4b53cSBarry Smith . label - The `DMLabel` marking boundary faces with the given value 171429fa399SMatthew G. Knepley 172cd0c2139SMatthew G Knepley Level: developer 173cd0c2139SMatthew G Knepley 17420f4b53cSBarry Smith Note: 175*41e3e744Sksagiyam This function will use the point `PetscSF` from the input `DM` and the ownership of the support cells to exclude points on the partition boundary from being marked. If you also wish to mark the partition boundary, you can use `DMSetPointSF()` to temporarily set it to `NULL`, and then reset it to the original object after the call. 176*41e3e744Sksagiyam 177*41e3e744Sksagiyam In DMForest there can be facets support sizes of which alone can not determine whether they are on the boundary. Currently, this function is not guaranteed to produce the correct result in such case. 17820f4b53cSBarry Smith 1791cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMLabelCreate()`, `DMCreateLabel()` 18009f723d9SJed Brown @*/ 181d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexMarkBoundaryFaces(DM dm, PetscInt val, DMLabel label) 182d71ae5a4SJacob Faibussowitsch { 183827c4036SVaclav Hapla DMPlexInterpolatedFlag flg; 184cd0c2139SMatthew G Knepley 185cd0c2139SMatthew G Knepley PetscFunctionBegin; 186827c4036SVaclav Hapla PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 1879566063dSJacob Faibussowitsch PetscCall(DMPlexIsInterpolated(dm, &flg)); 18808401ef6SPierre Jolivet PetscCheck(flg == DMPLEX_INTERPOLATED_FULL, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "DM is not fully interpolated on this rank"); 1899566063dSJacob Faibussowitsch PetscCall(DMPlexMarkBoundaryFaces_Internal(dm, val, 0, label)); 1903ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 191cd0c2139SMatthew G Knepley } 192cd0c2139SMatthew G Knepley 193d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexLabelComplete_Internal(DM dm, DMLabel label, PetscBool completeCells) 194d71ae5a4SJacob Faibussowitsch { 195b0bf5782SToby Isaac IS valueIS; 196ac51f24eSSander Arens PetscSF sfPoint; 197b0bf5782SToby Isaac const PetscInt *values; 198ac51f24eSSander Arens PetscInt numValues, v, cStart, cEnd, nroots; 199b0bf5782SToby Isaac 200b0bf5782SToby Isaac PetscFunctionBegin; 2019566063dSJacob Faibussowitsch PetscCall(DMLabelGetNumValues(label, &numValues)); 2029566063dSJacob Faibussowitsch PetscCall(DMLabelGetValueIS(label, &valueIS)); 2039566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(dm, 0, &cStart, &cEnd)); 2049566063dSJacob Faibussowitsch PetscCall(ISGetIndices(valueIS, &values)); 205b0bf5782SToby Isaac for (v = 0; v < numValues; ++v) { 206b0bf5782SToby Isaac IS pointIS; 207b0bf5782SToby Isaac const PetscInt *points; 208b0bf5782SToby Isaac PetscInt numPoints, p; 209b0bf5782SToby Isaac 2109566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumSize(label, values[v], &numPoints)); 2119566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(label, values[v], &pointIS)); 2129566063dSJacob Faibussowitsch PetscCall(ISGetIndices(pointIS, &points)); 213b0bf5782SToby Isaac for (p = 0; p < numPoints; ++p) { 214b0bf5782SToby Isaac PetscInt q = points[p]; 215b0bf5782SToby Isaac PetscInt *closure = NULL; 216b0bf5782SToby Isaac PetscInt closureSize, c; 217b0bf5782SToby Isaac 218b0bf5782SToby Isaac if (cStart <= q && q < cEnd && !completeCells) { /* skip cells */ 219b0bf5782SToby Isaac continue; 220b0bf5782SToby Isaac } 2219566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(dm, q, PETSC_TRUE, &closureSize, &closure)); 22248a46eb9SPierre Jolivet for (c = 0; c < closureSize * 2; c += 2) PetscCall(DMLabelSetValue(label, closure[c], values[v])); 2239566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dm, q, PETSC_TRUE, &closureSize, &closure)); 224b0bf5782SToby Isaac } 2259566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(pointIS, &points)); 2269566063dSJacob Faibussowitsch PetscCall(ISDestroy(&pointIS)); 227b0bf5782SToby Isaac } 2289566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(valueIS, &values)); 2299566063dSJacob Faibussowitsch PetscCall(ISDestroy(&valueIS)); 2309566063dSJacob Faibussowitsch PetscCall(DMGetPointSF(dm, &sfPoint)); 2319566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(sfPoint, &nroots, NULL, NULL, NULL)); 232ac51f24eSSander Arens if (nroots >= 0) { 23326279d81SSanderA DMLabel lblRoots, lblLeaves; 23426279d81SSanderA IS valueIS, pointIS; 23526279d81SSanderA const PetscInt *values; 23626279d81SSanderA PetscInt numValues, v; 23726279d81SSanderA 23826279d81SSanderA /* Pull point contributions from remote leaves into local roots */ 2399566063dSJacob Faibussowitsch PetscCall(DMLabelGather(label, sfPoint, &lblLeaves)); 2409566063dSJacob Faibussowitsch PetscCall(DMLabelGetValueIS(lblLeaves, &valueIS)); 2419566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(valueIS, &numValues)); 2429566063dSJacob Faibussowitsch PetscCall(ISGetIndices(valueIS, &values)); 24326279d81SSanderA for (v = 0; v < numValues; ++v) { 24426279d81SSanderA const PetscInt value = values[v]; 24526279d81SSanderA 2469566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(lblLeaves, value, &pointIS)); 2479566063dSJacob Faibussowitsch PetscCall(DMLabelInsertIS(label, pointIS, value)); 2489566063dSJacob Faibussowitsch PetscCall(ISDestroy(&pointIS)); 24926279d81SSanderA } 2509566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(valueIS, &values)); 2519566063dSJacob Faibussowitsch PetscCall(ISDestroy(&valueIS)); 2529566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&lblLeaves)); 25326279d81SSanderA /* Push point contributions from roots into remote leaves */ 2549566063dSJacob Faibussowitsch PetscCall(DMLabelDistribute(label, sfPoint, &lblRoots)); 2559566063dSJacob Faibussowitsch PetscCall(DMLabelGetValueIS(lblRoots, &valueIS)); 2569566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(valueIS, &numValues)); 2579566063dSJacob Faibussowitsch PetscCall(ISGetIndices(valueIS, &values)); 25826279d81SSanderA for (v = 0; v < numValues; ++v) { 25926279d81SSanderA const PetscInt value = values[v]; 26026279d81SSanderA 2619566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(lblRoots, value, &pointIS)); 2629566063dSJacob Faibussowitsch PetscCall(DMLabelInsertIS(label, pointIS, value)); 2639566063dSJacob Faibussowitsch PetscCall(ISDestroy(&pointIS)); 26426279d81SSanderA } 2659566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(valueIS, &values)); 2669566063dSJacob Faibussowitsch PetscCall(ISDestroy(&valueIS)); 2679566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&lblRoots)); 26826279d81SSanderA } 2693ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 270b0bf5782SToby Isaac } 271b0bf5782SToby Isaac 2722be2b188SMatthew G Knepley /*@ 2732be2b188SMatthew G Knepley DMPlexLabelComplete - Starting with a label marking points on a surface, we add the transitive closure to the surface 2742be2b188SMatthew G Knepley 2752be2b188SMatthew G Knepley Input Parameters: 27620f4b53cSBarry Smith + dm - The `DM` 27720f4b53cSBarry Smith - label - A `DMLabel` marking the surface points 2782be2b188SMatthew G Knepley 2792be2b188SMatthew G Knepley Output Parameter: 28020f4b53cSBarry Smith . label - A `DMLabel` marking all surface points in the transitive closure 2812be2b188SMatthew G Knepley 2822be2b188SMatthew G Knepley Level: developer 2832be2b188SMatthew G Knepley 2841cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexLabelCohesiveComplete()` 2852be2b188SMatthew G Knepley @*/ 286d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexLabelComplete(DM dm, DMLabel label) 287d71ae5a4SJacob Faibussowitsch { 2882be2b188SMatthew G Knepley PetscFunctionBegin; 2899566063dSJacob Faibussowitsch PetscCall(DMPlexLabelComplete_Internal(dm, label, PETSC_TRUE)); 2903ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2912be2b188SMatthew G Knepley } 2922be2b188SMatthew G Knepley 2936cf0e42fSMatthew G. Knepley /*@ 294a6e0b375SMatthew G. Knepley DMPlexLabelAddCells - Starting with a label marking points on a surface, we add a cell for each point 2956cf0e42fSMatthew G. Knepley 2966cf0e42fSMatthew G. Knepley Input Parameters: 29720f4b53cSBarry Smith + dm - The `DM` 29820f4b53cSBarry Smith - label - A `DMLabel` marking the surface points 2996cf0e42fSMatthew G. Knepley 3006cf0e42fSMatthew G. Knepley Output Parameter: 30120f4b53cSBarry Smith . label - A `DMLabel` incorporating cells 3026cf0e42fSMatthew G. Knepley 3036cf0e42fSMatthew G. Knepley Level: developer 3046cf0e42fSMatthew G. Knepley 30520f4b53cSBarry Smith Note: 30620f4b53cSBarry Smith The cells allow FEM boundary conditions to be applied using the cell geometry 3076cf0e42fSMatthew G. Knepley 3081cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexLabelAddFaceCells()`, `DMPlexLabelComplete()`, `DMPlexLabelCohesiveComplete()` 3096cf0e42fSMatthew G. Knepley @*/ 310d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexLabelAddCells(DM dm, DMLabel label) 311d71ae5a4SJacob Faibussowitsch { 3126cf0e42fSMatthew G. Knepley IS valueIS; 3136cf0e42fSMatthew G. Knepley const PetscInt *values; 3149df54392SMatthew G. Knepley PetscInt numValues, v, csStart, csEnd, chStart, chEnd; 3156cf0e42fSMatthew G. Knepley 3166cf0e42fSMatthew G. Knepley PetscFunctionBegin; 3179df54392SMatthew G. Knepley PetscCall(DMPlexGetSimplexOrBoxCells(dm, 0, &csStart, &csEnd)); 3189df54392SMatthew G. Knepley PetscCall(DMPlexGetHeightStratum(dm, 0, &chStart, &chEnd)); 3199566063dSJacob Faibussowitsch PetscCall(DMLabelGetNumValues(label, &numValues)); 3209566063dSJacob Faibussowitsch PetscCall(DMLabelGetValueIS(label, &valueIS)); 3219566063dSJacob Faibussowitsch PetscCall(ISGetIndices(valueIS, &values)); 3226cf0e42fSMatthew G. Knepley for (v = 0; v < numValues; ++v) { 3236cf0e42fSMatthew G. Knepley IS pointIS; 3246cf0e42fSMatthew G. Knepley const PetscInt *points; 3256cf0e42fSMatthew G. Knepley PetscInt numPoints, p; 3266cf0e42fSMatthew G. Knepley 3279566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumSize(label, values[v], &numPoints)); 3289566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(label, values[v], &pointIS)); 3299566063dSJacob Faibussowitsch PetscCall(ISGetIndices(pointIS, &points)); 3306cf0e42fSMatthew G. Knepley for (p = 0; p < numPoints; ++p) { 3319df54392SMatthew G. Knepley const PetscInt point = points[p]; 3326cf0e42fSMatthew G. Knepley PetscInt *closure = NULL; 3339df54392SMatthew G. Knepley PetscInt closureSize, cl, h, pStart, pEnd, cStart, cEnd; 3349df54392SMatthew G. Knepley 3359df54392SMatthew G. Knepley // If the point is a hybrid, allow hybrid cells 3369df54392SMatthew G. Knepley PetscCall(DMPlexGetPointHeight(dm, point, &h)); 3379df54392SMatthew G. Knepley PetscCall(DMPlexGetSimplexOrBoxCells(dm, h, &pStart, &pEnd)); 3389df54392SMatthew G. Knepley if (point >= pStart && point < pEnd) { 3399df54392SMatthew G. Knepley cStart = csStart; 3409df54392SMatthew G. Knepley cEnd = csEnd; 3419df54392SMatthew G. Knepley } else { 3429df54392SMatthew G. Knepley cStart = chStart; 3439df54392SMatthew G. Knepley cEnd = chEnd; 3449df54392SMatthew G. Knepley } 3456cf0e42fSMatthew G. Knepley 3469566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(dm, points[p], PETSC_FALSE, &closureSize, &closure)); 34722eabd52SMatthew G. Knepley for (cl = closureSize - 1; cl > 0; --cl) { 348a6e0b375SMatthew G. Knepley const PetscInt cell = closure[cl * 2]; 3499371c9d4SSatish Balay if ((cell >= cStart) && (cell < cEnd)) { 3509371c9d4SSatish Balay PetscCall(DMLabelSetValue(label, cell, values[v])); 3519371c9d4SSatish Balay break; 3529371c9d4SSatish Balay } 35322eabd52SMatthew G. Knepley } 3549566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dm, points[p], PETSC_FALSE, &closureSize, &closure)); 3556cf0e42fSMatthew G. Knepley } 3569566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(pointIS, &points)); 3579566063dSJacob Faibussowitsch PetscCall(ISDestroy(&pointIS)); 3586cf0e42fSMatthew G. Knepley } 3599566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(valueIS, &values)); 3609566063dSJacob Faibussowitsch PetscCall(ISDestroy(&valueIS)); 3613ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3626cf0e42fSMatthew G. Knepley } 3636cf0e42fSMatthew G. Knepley 364f402d5e4SToby Isaac /*@ 365a6e0b375SMatthew G. Knepley DMPlexLabelAddFaceCells - Starting with a label marking faces on a surface, we add a cell for each face 366a6e0b375SMatthew G. Knepley 367a6e0b375SMatthew G. Knepley Input Parameters: 36820f4b53cSBarry Smith + dm - The `DM` 36920f4b53cSBarry Smith - label - A `DMLabel` marking the surface points 370a6e0b375SMatthew G. Knepley 371a6e0b375SMatthew G. Knepley Output Parameter: 37220f4b53cSBarry Smith . label - A `DMLabel` incorporating cells 373a6e0b375SMatthew G. Knepley 374a6e0b375SMatthew G. Knepley Level: developer 375a6e0b375SMatthew G. Knepley 37620f4b53cSBarry Smith Note: 37720f4b53cSBarry Smith The cells allow FEM boundary conditions to be applied using the cell geometry 378a6e0b375SMatthew G. Knepley 3791cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexLabelAddCells()`, `DMPlexLabelComplete()`, `DMPlexLabelCohesiveComplete()` 380a6e0b375SMatthew G. Knepley @*/ 381d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexLabelAddFaceCells(DM dm, DMLabel label) 382d71ae5a4SJacob Faibussowitsch { 383a6e0b375SMatthew G. Knepley IS valueIS; 384a6e0b375SMatthew G. Knepley const PetscInt *values; 385a6e0b375SMatthew G. Knepley PetscInt numValues, v, cStart, cEnd, fStart, fEnd; 386a6e0b375SMatthew G. Knepley 387a6e0b375SMatthew G. Knepley PetscFunctionBegin; 3889566063dSJacob Faibussowitsch PetscCall(DMPlexGetSimplexOrBoxCells(dm, 0, &cStart, &cEnd)); 3899566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(dm, 1, &fStart, &fEnd)); 3909566063dSJacob Faibussowitsch PetscCall(DMLabelGetNumValues(label, &numValues)); 3919566063dSJacob Faibussowitsch PetscCall(DMLabelGetValueIS(label, &valueIS)); 3929566063dSJacob Faibussowitsch PetscCall(ISGetIndices(valueIS, &values)); 393a6e0b375SMatthew G. Knepley for (v = 0; v < numValues; ++v) { 394a6e0b375SMatthew G. Knepley IS pointIS; 395a6e0b375SMatthew G. Knepley const PetscInt *points; 396a6e0b375SMatthew G. Knepley PetscInt numPoints, p; 397a6e0b375SMatthew G. Knepley 3989566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumSize(label, values[v], &numPoints)); 3999566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(label, values[v], &pointIS)); 4009566063dSJacob Faibussowitsch PetscCall(ISGetIndices(pointIS, &points)); 401a6e0b375SMatthew G. Knepley for (p = 0; p < numPoints; ++p) { 402a6e0b375SMatthew G. Knepley const PetscInt face = points[p]; 403a6e0b375SMatthew G. Knepley PetscInt *closure = NULL; 404a6e0b375SMatthew G. Knepley PetscInt closureSize, cl; 405a6e0b375SMatthew G. Knepley 406a6e0b375SMatthew G. Knepley if ((face < fStart) || (face >= fEnd)) continue; 4079566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(dm, face, PETSC_FALSE, &closureSize, &closure)); 408a6e0b375SMatthew G. Knepley for (cl = closureSize - 1; cl > 0; --cl) { 409a6e0b375SMatthew G. Knepley const PetscInt cell = closure[cl * 2]; 4109371c9d4SSatish Balay if ((cell >= cStart) && (cell < cEnd)) { 4119371c9d4SSatish Balay PetscCall(DMLabelSetValue(label, cell, values[v])); 4129371c9d4SSatish Balay break; 4139371c9d4SSatish Balay } 414a6e0b375SMatthew G. Knepley } 4159566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dm, face, PETSC_FALSE, &closureSize, &closure)); 416a6e0b375SMatthew G. Knepley } 4179566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(pointIS, &points)); 4189566063dSJacob Faibussowitsch PetscCall(ISDestroy(&pointIS)); 419a6e0b375SMatthew G. Knepley } 4209566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(valueIS, &values)); 4219566063dSJacob Faibussowitsch PetscCall(ISDestroy(&valueIS)); 4223ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 423a6e0b375SMatthew G. Knepley } 424a6e0b375SMatthew G. Knepley 425a6e0b375SMatthew G. Knepley /*@ 426f402d5e4SToby Isaac DMPlexLabelClearCells - Remove cells from a label 427f402d5e4SToby Isaac 428f402d5e4SToby Isaac Input Parameters: 42920f4b53cSBarry Smith + dm - The `DM` 43020f4b53cSBarry Smith - label - A `DMLabel` marking surface points and their adjacent cells 431f402d5e4SToby Isaac 432f402d5e4SToby Isaac Output Parameter: 43320f4b53cSBarry Smith . label - A `DMLabel` without cells 434f402d5e4SToby Isaac 435f402d5e4SToby Isaac Level: developer 436f402d5e4SToby Isaac 43720f4b53cSBarry Smith Note: 43820f4b53cSBarry Smith This undoes `DMPlexLabelAddCells()` or `DMPlexLabelAddFaceCells()` 439f402d5e4SToby Isaac 4401cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexLabelComplete()`, `DMPlexLabelCohesiveComplete()`, `DMPlexLabelAddCells()` 441f402d5e4SToby Isaac @*/ 442d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexLabelClearCells(DM dm, DMLabel label) 443d71ae5a4SJacob Faibussowitsch { 444f402d5e4SToby Isaac IS valueIS; 445f402d5e4SToby Isaac const PetscInt *values; 446485ad865SMatthew G. Knepley PetscInt numValues, v, cStart, cEnd; 447f402d5e4SToby Isaac 448f402d5e4SToby Isaac PetscFunctionBegin; 4499566063dSJacob Faibussowitsch PetscCall(DMPlexGetSimplexOrBoxCells(dm, 0, &cStart, &cEnd)); 4509566063dSJacob Faibussowitsch PetscCall(DMLabelGetNumValues(label, &numValues)); 4519566063dSJacob Faibussowitsch PetscCall(DMLabelGetValueIS(label, &valueIS)); 4529566063dSJacob Faibussowitsch PetscCall(ISGetIndices(valueIS, &values)); 453f402d5e4SToby Isaac for (v = 0; v < numValues; ++v) { 454f402d5e4SToby Isaac IS pointIS; 455f402d5e4SToby Isaac const PetscInt *points; 456f402d5e4SToby Isaac PetscInt numPoints, p; 457f402d5e4SToby Isaac 4589566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumSize(label, values[v], &numPoints)); 4599566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(label, values[v], &pointIS)); 4609566063dSJacob Faibussowitsch PetscCall(ISGetIndices(pointIS, &points)); 461f402d5e4SToby Isaac for (p = 0; p < numPoints; ++p) { 462f402d5e4SToby Isaac PetscInt point = points[p]; 463f402d5e4SToby Isaac 46448a46eb9SPierre Jolivet if (point >= cStart && point < cEnd) PetscCall(DMLabelClearValue(label, point, values[v])); 465f402d5e4SToby Isaac } 4669566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(pointIS, &points)); 4679566063dSJacob Faibussowitsch PetscCall(ISDestroy(&pointIS)); 468f402d5e4SToby Isaac } 4699566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(valueIS, &values)); 4709566063dSJacob Faibussowitsch PetscCall(ISDestroy(&valueIS)); 4713ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 472f402d5e4SToby Isaac } 473f402d5e4SToby Isaac 47459eef20bSToby Isaac /* take (oldEnd, added) pairs, ordered by height and convert them to (oldstart, newstart) pairs, ordered by ascending 47559eef20bSToby Isaac * index (skipping first, which is (0,0)) */ 476d71ae5a4SJacob Faibussowitsch static inline PetscErrorCode DMPlexShiftPointSetUp_Internal(PetscInt depth, PetscInt depthShift[]) 477d71ae5a4SJacob Faibussowitsch { 4782582d50cSToby Isaac PetscInt d, off = 0; 4792582d50cSToby Isaac 4802582d50cSToby Isaac PetscFunctionBegin; 48159eef20bSToby Isaac /* sort by (oldend): yes this is an O(n^2) sort, we expect depth <= 3 */ 4820974a383SToby Isaac for (d = 0; d < depth; d++) { 4832582d50cSToby Isaac PetscInt firstd = d; 4840974a383SToby Isaac PetscInt firstStart = depthShift[2 * d]; 4852582d50cSToby Isaac PetscInt e; 4862582d50cSToby Isaac 4872582d50cSToby Isaac for (e = d + 1; e <= depth; e++) { 4882582d50cSToby Isaac if (depthShift[2 * e] < firstStart) { 4892582d50cSToby Isaac firstd = e; 4902582d50cSToby Isaac firstStart = depthShift[2 * d]; 4912582d50cSToby Isaac } 4922582d50cSToby Isaac } 4932582d50cSToby Isaac if (firstd != d) { 4942582d50cSToby Isaac PetscInt swap[2]; 4952582d50cSToby Isaac 4962582d50cSToby Isaac e = firstd; 4972582d50cSToby Isaac swap[0] = depthShift[2 * d]; 4982582d50cSToby Isaac swap[1] = depthShift[2 * d + 1]; 4992582d50cSToby Isaac depthShift[2 * d] = depthShift[2 * e]; 5002582d50cSToby Isaac depthShift[2 * d + 1] = depthShift[2 * e + 1]; 5012582d50cSToby Isaac depthShift[2 * e] = swap[0]; 5022582d50cSToby Isaac depthShift[2 * e + 1] = swap[1]; 5032582d50cSToby Isaac } 5042582d50cSToby Isaac } 5052582d50cSToby Isaac /* convert (oldstart, added) to (oldstart, newstart) */ 5060974a383SToby Isaac for (d = 0; d <= depth; d++) { 5072582d50cSToby Isaac off += depthShift[2 * d + 1]; 50859eef20bSToby Isaac depthShift[2 * d + 1] = depthShift[2 * d] + off; 5092582d50cSToby Isaac } 5103ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5112582d50cSToby Isaac } 5122582d50cSToby Isaac 5132582d50cSToby Isaac /* depthShift is a list of (old, new) pairs */ 514d71ae5a4SJacob Faibussowitsch static inline PetscInt DMPlexShiftPoint_Internal(PetscInt p, PetscInt depth, PetscInt depthShift[]) 515d71ae5a4SJacob Faibussowitsch { 5162582d50cSToby Isaac PetscInt d; 5172582d50cSToby Isaac PetscInt newOff = 0; 5182582d50cSToby Isaac 5192582d50cSToby Isaac for (d = 0; d <= depth; d++) { 5202582d50cSToby Isaac if (p < depthShift[2 * d]) return p + newOff; 5212582d50cSToby Isaac else newOff = depthShift[2 * d + 1] - depthShift[2 * d]; 5222582d50cSToby Isaac } 5230974a383SToby Isaac return p + newOff; 5242582d50cSToby Isaac } 5252582d50cSToby Isaac 5262582d50cSToby Isaac /* depthShift is a list of (old, new) pairs */ 527d71ae5a4SJacob Faibussowitsch static inline PetscInt DMPlexShiftPointInverse_Internal(PetscInt p, PetscInt depth, PetscInt depthShift[]) 528d71ae5a4SJacob Faibussowitsch { 5292582d50cSToby Isaac PetscInt d; 5302582d50cSToby Isaac PetscInt newOff = 0; 5312582d50cSToby Isaac 5322582d50cSToby Isaac for (d = 0; d <= depth; d++) { 5332582d50cSToby Isaac if (p < depthShift[2 * d + 1]) return p + newOff; 5342582d50cSToby Isaac else newOff = depthShift[2 * d] - depthShift[2 * d + 1]; 5352582d50cSToby Isaac } 5360974a383SToby Isaac return p + newOff; 537cd0c2139SMatthew G Knepley } 538cd0c2139SMatthew G Knepley 539d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexShiftSizes_Internal(DM dm, PetscInt depthShift[], DM dmNew) 540d71ae5a4SJacob Faibussowitsch { 541cd0c2139SMatthew G Knepley PetscInt depth = 0, d, pStart, pEnd, p; 542fa8e8ae5SToby Isaac DMLabel depthLabel; 543cd0c2139SMatthew G Knepley 544cd0c2139SMatthew G Knepley PetscFunctionBegin; 5459566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepth(dm, &depth)); 5463ba16761SJacob Faibussowitsch if (depth < 0) PetscFunctionReturn(PETSC_SUCCESS); 547cd0c2139SMatthew G Knepley /* Step 1: Expand chart */ 5489566063dSJacob Faibussowitsch PetscCall(DMPlexGetChart(dm, &pStart, &pEnd)); 5490974a383SToby Isaac pEnd = DMPlexShiftPoint_Internal(pEnd, depth, depthShift); 5509566063dSJacob Faibussowitsch PetscCall(DMPlexSetChart(dmNew, pStart, pEnd)); 5519566063dSJacob Faibussowitsch PetscCall(DMCreateLabel(dmNew, "depth")); 5529566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthLabel(dmNew, &depthLabel)); 5539566063dSJacob Faibussowitsch PetscCall(DMCreateLabel(dmNew, "celltype")); 554cd0c2139SMatthew G Knepley /* Step 2: Set cone and support sizes */ 555cd0c2139SMatthew G Knepley for (d = 0; d <= depth; ++d) { 556fa8e8ae5SToby Isaac PetscInt pStartNew, pEndNew; 557fa8e8ae5SToby Isaac IS pIS; 558fa8e8ae5SToby Isaac 5599566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthStratum(dm, d, &pStart, &pEnd)); 560fa8e8ae5SToby Isaac pStartNew = DMPlexShiftPoint_Internal(pStart, depth, depthShift); 561fa8e8ae5SToby Isaac pEndNew = DMPlexShiftPoint_Internal(pEnd, depth, depthShift); 5629566063dSJacob Faibussowitsch PetscCall(ISCreateStride(PETSC_COMM_SELF, pEndNew - pStartNew, pStartNew, 1, &pIS)); 5639566063dSJacob Faibussowitsch PetscCall(DMLabelSetStratumIS(depthLabel, d, pIS)); 5649566063dSJacob Faibussowitsch PetscCall(ISDestroy(&pIS)); 565cd0c2139SMatthew G Knepley for (p = pStart; p < pEnd; ++p) { 5662582d50cSToby Isaac PetscInt newp = DMPlexShiftPoint_Internal(p, depth, depthShift); 567cd0c2139SMatthew G Knepley PetscInt size; 568412e9a14SMatthew G. Knepley DMPolytopeType ct; 569cd0c2139SMatthew G Knepley 5709566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, p, &size)); 5719566063dSJacob Faibussowitsch PetscCall(DMPlexSetConeSize(dmNew, newp, size)); 5729566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dm, p, &size)); 5739566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupportSize(dmNew, newp, size)); 5749566063dSJacob Faibussowitsch PetscCall(DMPlexGetCellType(dm, p, &ct)); 5759566063dSJacob Faibussowitsch PetscCall(DMPlexSetCellType(dmNew, newp, ct)); 576cd0c2139SMatthew G Knepley } 577cd0c2139SMatthew G Knepley } 5783ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 579cd0c2139SMatthew G Knepley } 580cd0c2139SMatthew G Knepley 581d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexShiftPoints_Internal(DM dm, PetscInt depthShift[], DM dmNew) 582d71ae5a4SJacob Faibussowitsch { 5832582d50cSToby Isaac PetscInt *newpoints; 5842582d50cSToby Isaac PetscInt depth = 0, maxConeSize, maxSupportSize, maxConeSizeNew, maxSupportSizeNew, pStart, pEnd, p; 585cd0c2139SMatthew G Knepley 586cd0c2139SMatthew G Knepley PetscFunctionBegin; 5879566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepth(dm, &depth)); 5883ba16761SJacob Faibussowitsch if (depth < 0) PetscFunctionReturn(PETSC_SUCCESS); 5899566063dSJacob Faibussowitsch PetscCall(DMPlexGetMaxSizes(dm, &maxConeSize, &maxSupportSize)); 5909566063dSJacob Faibussowitsch PetscCall(DMPlexGetMaxSizes(dmNew, &maxConeSizeNew, &maxSupportSizeNew)); 5919566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(PetscMax(PetscMax(maxConeSize, maxSupportSize), PetscMax(maxConeSizeNew, maxSupportSizeNew)), &newpoints)); 592cd0c2139SMatthew G Knepley /* Step 5: Set cones and supports */ 5939566063dSJacob Faibussowitsch PetscCall(DMPlexGetChart(dm, &pStart, &pEnd)); 594cd0c2139SMatthew G Knepley for (p = pStart; p < pEnd; ++p) { 595cd0c2139SMatthew G Knepley const PetscInt *points = NULL, *orientations = NULL; 5962582d50cSToby Isaac PetscInt size, sizeNew, i, newp = DMPlexShiftPoint_Internal(p, depth, depthShift); 597cd0c2139SMatthew G Knepley 5989566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, p, &size)); 5999566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, p, &points)); 6009566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeOrientation(dm, p, &orientations)); 601ad540459SPierre Jolivet for (i = 0; i < size; ++i) newpoints[i] = DMPlexShiftPoint_Internal(points[i], depth, depthShift); 6029566063dSJacob Faibussowitsch PetscCall(DMPlexSetCone(dmNew, newp, newpoints)); 6039566063dSJacob Faibussowitsch PetscCall(DMPlexSetConeOrientation(dmNew, newp, orientations)); 6049566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dm, p, &size)); 6059566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dmNew, newp, &sizeNew)); 6069566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(dm, p, &points)); 607ad540459SPierre Jolivet for (i = 0; i < size; ++i) newpoints[i] = DMPlexShiftPoint_Internal(points[i], depth, depthShift); 608dcbb62e8SMatthew G. Knepley for (i = size; i < sizeNew; ++i) newpoints[i] = 0; 6099566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupport(dmNew, newp, newpoints)); 610cd0c2139SMatthew G Knepley } 6119566063dSJacob Faibussowitsch PetscCall(PetscFree(newpoints)); 6123ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 613cd0c2139SMatthew G Knepley } 614cd0c2139SMatthew G Knepley 615d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexShiftCoordinates_Internal(DM dm, PetscInt depthShift[], DM dmNew) 616d71ae5a4SJacob Faibussowitsch { 617cd0c2139SMatthew G Knepley PetscSection coordSection, newCoordSection; 618cd0c2139SMatthew G Knepley Vec coordinates, newCoordinates; 619cd0c2139SMatthew G Knepley PetscScalar *coords, *newCoords; 620f2b8cce1SMatthew G. Knepley PetscInt coordSize, sStart, sEnd; 621f2b8cce1SMatthew G. Knepley PetscInt dim, depth = 0, cStart, cEnd, cStartNew, cEndNew, c, vStart, vEnd, vStartNew, vEndNew, v; 622f2b8cce1SMatthew G. Knepley PetscBool hasCells; 623cd0c2139SMatthew G Knepley 624cd0c2139SMatthew G Knepley PetscFunctionBegin; 6259566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDim(dm, &dim)); 6269566063dSJacob Faibussowitsch PetscCall(DMSetCoordinateDim(dmNew, dim)); 6279566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepth(dm, &depth)); 628cd0c2139SMatthew G Knepley /* Step 8: Convert coordinates */ 6299566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthStratum(dm, 0, &vStart, &vEnd)); 6309566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(dm, 0, &cStart, &cEnd)); 6319566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthStratum(dmNew, 0, &vStartNew, &vEndNew)); 6329566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(dmNew, 0, &cStartNew, &cEndNew)); 6339566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateSection(dm, &coordSection)); 6349566063dSJacob Faibussowitsch PetscCall(PetscSectionCreate(PetscObjectComm((PetscObject)dm), &newCoordSection)); 6359566063dSJacob Faibussowitsch PetscCall(PetscSectionSetNumFields(newCoordSection, 1)); 6369566063dSJacob Faibussowitsch PetscCall(PetscSectionSetFieldComponents(newCoordSection, 0, dim)); 6379566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(coordSection, &sStart, &sEnd)); 638f2b8cce1SMatthew G. Knepley hasCells = sStart == cStart ? PETSC_TRUE : PETSC_FALSE; 6399566063dSJacob Faibussowitsch PetscCall(PetscSectionSetChart(newCoordSection, hasCells ? cStartNew : vStartNew, vEndNew)); 640f2b8cce1SMatthew G. Knepley if (hasCells) { 641f2b8cce1SMatthew G. Knepley for (c = cStart; c < cEnd; ++c) { 642f2b8cce1SMatthew G. Knepley PetscInt cNew = DMPlexShiftPoint_Internal(c, depth, depthShift), dof; 643f2b8cce1SMatthew G. Knepley 6449566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(coordSection, c, &dof)); 6459566063dSJacob Faibussowitsch PetscCall(PetscSectionSetDof(newCoordSection, cNew, dof)); 6469566063dSJacob Faibussowitsch PetscCall(PetscSectionSetFieldDof(newCoordSection, cNew, 0, dof)); 647f2b8cce1SMatthew G. Knepley } 648f2b8cce1SMatthew G. Knepley } 649cd0c2139SMatthew G Knepley for (v = vStartNew; v < vEndNew; ++v) { 6509566063dSJacob Faibussowitsch PetscCall(PetscSectionSetDof(newCoordSection, v, dim)); 6519566063dSJacob Faibussowitsch PetscCall(PetscSectionSetFieldDof(newCoordSection, v, 0, dim)); 652cd0c2139SMatthew G Knepley } 6539566063dSJacob Faibussowitsch PetscCall(PetscSectionSetUp(newCoordSection)); 6549566063dSJacob Faibussowitsch PetscCall(DMSetCoordinateSection(dmNew, PETSC_DETERMINE, newCoordSection)); 6559566063dSJacob Faibussowitsch PetscCall(PetscSectionGetStorageSize(newCoordSection, &coordSize)); 6569566063dSJacob Faibussowitsch PetscCall(VecCreate(PETSC_COMM_SELF, &newCoordinates)); 6579566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)newCoordinates, "coordinates")); 6589566063dSJacob Faibussowitsch PetscCall(VecSetSizes(newCoordinates, coordSize, PETSC_DETERMINE)); 6599566063dSJacob Faibussowitsch PetscCall(VecSetBlockSize(newCoordinates, dim)); 6609566063dSJacob Faibussowitsch PetscCall(VecSetType(newCoordinates, VECSTANDARD)); 6619566063dSJacob Faibussowitsch PetscCall(DMSetCoordinatesLocal(dmNew, newCoordinates)); 6629566063dSJacob Faibussowitsch PetscCall(DMGetCoordinatesLocal(dm, &coordinates)); 6639566063dSJacob Faibussowitsch PetscCall(VecGetArray(coordinates, &coords)); 6649566063dSJacob Faibussowitsch PetscCall(VecGetArray(newCoordinates, &newCoords)); 665f2b8cce1SMatthew G. Knepley if (hasCells) { 666f2b8cce1SMatthew G. Knepley for (c = cStart; c < cEnd; ++c) { 667f2b8cce1SMatthew G. Knepley PetscInt cNew = DMPlexShiftPoint_Internal(c, depth, depthShift), dof, off, noff, d; 668f2b8cce1SMatthew G. Knepley 6699566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(coordSection, c, &dof)); 6709566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(coordSection, c, &off)); 6719566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(newCoordSection, cNew, &noff)); 672f2b8cce1SMatthew G. Knepley for (d = 0; d < dof; ++d) newCoords[noff + d] = coords[off + d]; 673f2b8cce1SMatthew G. Knepley } 674f2b8cce1SMatthew G. Knepley } 675cd0c2139SMatthew G Knepley for (v = vStart; v < vEnd; ++v) { 676cd0c2139SMatthew G Knepley PetscInt dof, off, noff, d; 677cd0c2139SMatthew G Knepley 6789566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(coordSection, v, &dof)); 6799566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(coordSection, v, &off)); 6809566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(newCoordSection, DMPlexShiftPoint_Internal(v, depth, depthShift), &noff)); 681f2b8cce1SMatthew G. Knepley for (d = 0; d < dof; ++d) newCoords[noff + d] = coords[off + d]; 682cd0c2139SMatthew G Knepley } 6839566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(coordinates, &coords)); 6849566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(newCoordinates, &newCoords)); 6859566063dSJacob Faibussowitsch PetscCall(VecDestroy(&newCoordinates)); 6869566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&newCoordSection)); 6873ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 688cd0c2139SMatthew G Knepley } 689cd0c2139SMatthew G Knepley 690d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexShiftSF_Single(DM dm, PetscInt depthShift[], PetscSF sf, PetscSF sfNew) 691d71ae5a4SJacob Faibussowitsch { 692cd0c2139SMatthew G Knepley const PetscSFNode *remotePoints; 693cd0c2139SMatthew G Knepley PetscSFNode *gremotePoints; 694cd0c2139SMatthew G Knepley const PetscInt *localPoints; 695cd0c2139SMatthew G Knepley PetscInt *glocalPoints, *newLocation, *newRemoteLocation; 6960e33faafSMatthew G. Knepley PetscInt numRoots, numLeaves, l, pStart, pEnd, depth = 0, totShift = 0; 697cd0c2139SMatthew G Knepley 698cd0c2139SMatthew G Knepley PetscFunctionBegin; 6999566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepth(dm, &depth)); 7009566063dSJacob Faibussowitsch PetscCall(DMPlexGetChart(dm, &pStart, &pEnd)); 7019566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(sf, &numRoots, &numLeaves, &localPoints, &remotePoints)); 7026e21efdcSToby Isaac totShift = DMPlexShiftPoint_Internal(pEnd, depth, depthShift) - pEnd; 703cd0c2139SMatthew G Knepley if (numRoots >= 0) { 7049566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(numRoots, &newLocation, pEnd - pStart, &newRemoteLocation)); 7050e33faafSMatthew G. Knepley for (l = 0; l < numRoots; ++l) newLocation[l] = DMPlexShiftPoint_Internal(l, depth, depthShift); 7069566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(sf, MPIU_INT, newLocation, newRemoteLocation, MPI_REPLACE)); 7079566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(sf, MPIU_INT, newLocation, newRemoteLocation, MPI_REPLACE)); 7089566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(numLeaves, &glocalPoints)); 7099566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(numLeaves, &gremotePoints)); 710cd0c2139SMatthew G Knepley for (l = 0; l < numLeaves; ++l) { 7112582d50cSToby Isaac glocalPoints[l] = DMPlexShiftPoint_Internal(localPoints[l], depth, depthShift); 712cd0c2139SMatthew G Knepley gremotePoints[l].rank = remotePoints[l].rank; 713cd0c2139SMatthew G Knepley gremotePoints[l].index = newRemoteLocation[localPoints[l]]; 714cd0c2139SMatthew G Knepley } 7159566063dSJacob Faibussowitsch PetscCall(PetscFree2(newLocation, newRemoteLocation)); 7169566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(sfNew, numRoots + totShift, numLeaves, glocalPoints, PETSC_OWN_POINTER, gremotePoints, PETSC_OWN_POINTER)); 7170e33faafSMatthew G. Knepley } 7183ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7190e33faafSMatthew G. Knepley } 7200e33faafSMatthew G. Knepley 721d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexShiftSF_Internal(DM dm, PetscInt depthShift[], DM dmNew) 722d71ae5a4SJacob Faibussowitsch { 7230e33faafSMatthew G. Knepley PetscSF sfPoint, sfPointNew; 7240e33faafSMatthew G. Knepley PetscBool useNatural; 7250e33faafSMatthew G. Knepley 7260e33faafSMatthew G. Knepley PetscFunctionBegin; 7270e33faafSMatthew G. Knepley /* Step 9: Convert pointSF */ 7289566063dSJacob Faibussowitsch PetscCall(DMGetPointSF(dm, &sfPoint)); 7299566063dSJacob Faibussowitsch PetscCall(DMGetPointSF(dmNew, &sfPointNew)); 7309566063dSJacob Faibussowitsch PetscCall(DMPlexShiftSF_Single(dm, depthShift, sfPoint, sfPointNew)); 7310e33faafSMatthew G. Knepley /* Step 9b: Convert naturalSF */ 7329566063dSJacob Faibussowitsch PetscCall(DMGetUseNatural(dm, &useNatural)); 7330e33faafSMatthew G. Knepley if (useNatural) { 7340e33faafSMatthew G. Knepley PetscSF sfNat, sfNatNew; 7350e33faafSMatthew G. Knepley 7369566063dSJacob Faibussowitsch PetscCall(DMSetUseNatural(dmNew, useNatural)); 7379566063dSJacob Faibussowitsch PetscCall(DMGetNaturalSF(dm, &sfNat)); 7389566063dSJacob Faibussowitsch PetscCall(DMGetNaturalSF(dmNew, &sfNatNew)); 7399566063dSJacob Faibussowitsch PetscCall(DMPlexShiftSF_Single(dm, depthShift, sfNat, sfNatNew)); 740cd0c2139SMatthew G Knepley } 7413ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 742cd0c2139SMatthew G Knepley } 743cd0c2139SMatthew G Knepley 744d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexShiftLabels_Internal(DM dm, PetscInt depthShift[], DM dmNew) 745d71ae5a4SJacob Faibussowitsch { 746d56405f8SMatthew G. Knepley PetscInt depth = 0, numLabels, l; 747cd0c2139SMatthew G Knepley 748cd0c2139SMatthew G Knepley PetscFunctionBegin; 7499566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepth(dm, &depth)); 750cd0c2139SMatthew G Knepley /* Step 10: Convert labels */ 7519566063dSJacob Faibussowitsch PetscCall(DMGetNumLabels(dm, &numLabels)); 752cd0c2139SMatthew G Knepley for (l = 0; l < numLabels; ++l) { 753cd0c2139SMatthew G Knepley DMLabel label, newlabel; 754cd0c2139SMatthew G Knepley const char *lname; 755fa8e8ae5SToby Isaac PetscBool isDepth, isDim; 756cd0c2139SMatthew G Knepley IS valueIS; 757cd0c2139SMatthew G Knepley const PetscInt *values; 758cd0c2139SMatthew G Knepley PetscInt numValues, val; 759cd0c2139SMatthew G Knepley 7609566063dSJacob Faibussowitsch PetscCall(DMGetLabelName(dm, l, &lname)); 7619566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(lname, "depth", &isDepth)); 762cd0c2139SMatthew G Knepley if (isDepth) continue; 7639566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(lname, "dim", &isDim)); 764fa8e8ae5SToby Isaac if (isDim) continue; 7659566063dSJacob Faibussowitsch PetscCall(DMCreateLabel(dmNew, lname)); 7669566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, lname, &label)); 7679566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dmNew, lname, &newlabel)); 7689566063dSJacob Faibussowitsch PetscCall(DMLabelGetDefaultValue(label, &val)); 7699566063dSJacob Faibussowitsch PetscCall(DMLabelSetDefaultValue(newlabel, val)); 7709566063dSJacob Faibussowitsch PetscCall(DMLabelGetValueIS(label, &valueIS)); 7719566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(valueIS, &numValues)); 7729566063dSJacob Faibussowitsch PetscCall(ISGetIndices(valueIS, &values)); 773cd0c2139SMatthew G Knepley for (val = 0; val < numValues; ++val) { 774cd0c2139SMatthew G Knepley IS pointIS; 775cd0c2139SMatthew G Knepley const PetscInt *points; 776cd0c2139SMatthew G Knepley PetscInt numPoints, p; 777cd0c2139SMatthew G Knepley 7789566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(label, values[val], &pointIS)); 7799566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(pointIS, &numPoints)); 7809566063dSJacob Faibussowitsch PetscCall(ISGetIndices(pointIS, &points)); 781cd0c2139SMatthew G Knepley for (p = 0; p < numPoints; ++p) { 7822582d50cSToby Isaac const PetscInt newpoint = DMPlexShiftPoint_Internal(points[p], depth, depthShift); 783cd0c2139SMatthew G Knepley 7849566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(newlabel, newpoint, values[val])); 785cd0c2139SMatthew G Knepley } 7869566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(pointIS, &points)); 7879566063dSJacob Faibussowitsch PetscCall(ISDestroy(&pointIS)); 788cd0c2139SMatthew G Knepley } 7899566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(valueIS, &values)); 7909566063dSJacob Faibussowitsch PetscCall(ISDestroy(&valueIS)); 791cd0c2139SMatthew G Knepley } 7923ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 793d56405f8SMatthew G. Knepley } 794d56405f8SMatthew G. Knepley 795d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexCreateVTKLabel_Internal(DM dm, PetscBool createGhostLabel, DM dmNew) 796d71ae5a4SJacob Faibussowitsch { 797d56405f8SMatthew G. Knepley PetscSF sfPoint; 798d56405f8SMatthew G. Knepley DMLabel vtkLabel, ghostLabel = NULL; 799d56405f8SMatthew G. Knepley const PetscSFNode *leafRemote; 800d56405f8SMatthew G. Knepley const PetscInt *leafLocal; 801d56405f8SMatthew G. Knepley PetscInt cellHeight, cStart, cEnd, c, fStart, fEnd, f, numLeaves, l; 802d56405f8SMatthew G. Knepley PetscMPIInt rank; 803d56405f8SMatthew G. Knepley 804d56405f8SMatthew G. Knepley PetscFunctionBegin; 805cd0c2139SMatthew G Knepley /* Step 11: Make label for output (vtk) and to mark ghost points (ghost) */ 8069566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)dm), &rank)); 8079566063dSJacob Faibussowitsch PetscCall(DMGetPointSF(dm, &sfPoint)); 8089566063dSJacob Faibussowitsch PetscCall(DMPlexGetVTKCellHeight(dmNew, &cellHeight)); 8099566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(dm, cellHeight, &cStart, &cEnd)); 8109566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(sfPoint, NULL, &numLeaves, &leafLocal, &leafRemote)); 8119566063dSJacob Faibussowitsch PetscCall(DMCreateLabel(dmNew, "vtk")); 8129566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dmNew, "vtk", &vtkLabel)); 813d56405f8SMatthew G. Knepley if (createGhostLabel) { 8149566063dSJacob Faibussowitsch PetscCall(DMCreateLabel(dmNew, "ghost")); 8159566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dmNew, "ghost", &ghostLabel)); 816d56405f8SMatthew G. Knepley } 817cd0c2139SMatthew G Knepley for (l = 0, c = cStart; l < numLeaves && c < cEnd; ++l, ++c) { 81848a46eb9SPierre Jolivet for (; c < leafLocal[l] && c < cEnd; ++c) PetscCall(DMLabelSetValue(vtkLabel, c, 1)); 819cd0c2139SMatthew G Knepley if (leafLocal[l] >= cEnd) break; 820cd0c2139SMatthew G Knepley if (leafRemote[l].rank == rank) { 8219566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(vtkLabel, c, 1)); 8221baa6e33SBarry Smith } else if (ghostLabel) PetscCall(DMLabelSetValue(ghostLabel, c, 2)); 823cd0c2139SMatthew G Knepley } 82448a46eb9SPierre Jolivet for (; c < cEnd; ++c) PetscCall(DMLabelSetValue(vtkLabel, c, 1)); 825d56405f8SMatthew G. Knepley if (ghostLabel) { 8269566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(dmNew, 1, &fStart, &fEnd)); 827cd0c2139SMatthew G Knepley for (f = fStart; f < fEnd; ++f) { 828cd0c2139SMatthew G Knepley PetscInt numCells; 829cd0c2139SMatthew G Knepley 8309566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dmNew, f, &numCells)); 831cd0c2139SMatthew G Knepley if (numCells < 2) { 8329566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(ghostLabel, f, 1)); 833cd0c2139SMatthew G Knepley } else { 834cd0c2139SMatthew G Knepley const PetscInt *cells = NULL; 835cd0c2139SMatthew G Knepley PetscInt vA, vB; 836cd0c2139SMatthew G Knepley 8379566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(dmNew, f, &cells)); 8389566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(vtkLabel, cells[0], &vA)); 8399566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(vtkLabel, cells[1], &vB)); 8409566063dSJacob Faibussowitsch if (vA != 1 && vB != 1) PetscCall(DMLabelSetValue(ghostLabel, f, 1)); 841cd0c2139SMatthew G Knepley } 842cd0c2139SMatthew G Knepley } 843d56405f8SMatthew G. Knepley } 8443ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 845cd0c2139SMatthew G Knepley } 846cd0c2139SMatthew G Knepley 847d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexShiftTree_Internal(DM dm, PetscInt depthShift[], DM dmNew) 848d71ae5a4SJacob Faibussowitsch { 849ca04dac2SToby Isaac DM refTree; 850ca04dac2SToby Isaac PetscSection pSec; 851ca04dac2SToby Isaac PetscInt *parents, *childIDs; 852ca04dac2SToby Isaac 853ca04dac2SToby Isaac PetscFunctionBegin; 8549566063dSJacob Faibussowitsch PetscCall(DMPlexGetReferenceTree(dm, &refTree)); 8559566063dSJacob Faibussowitsch PetscCall(DMPlexSetReferenceTree(dmNew, refTree)); 8569566063dSJacob Faibussowitsch PetscCall(DMPlexGetTree(dm, &pSec, &parents, &childIDs, NULL, NULL)); 857ca04dac2SToby Isaac if (pSec) { 8582582d50cSToby Isaac PetscInt p, pStart, pEnd, *parentsShifted, pStartShifted, pEndShifted, depth; 859fb4630b5SToby Isaac PetscInt *childIDsShifted; 860ca04dac2SToby Isaac PetscSection pSecShifted; 861ca04dac2SToby Isaac 8629566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(pSec, &pStart, &pEnd)); 8639566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepth(dm, &depth)); 8642582d50cSToby Isaac pStartShifted = DMPlexShiftPoint_Internal(pStart, depth, depthShift); 8652582d50cSToby Isaac pEndShifted = DMPlexShiftPoint_Internal(pEnd, depth, depthShift); 8669566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(pEndShifted - pStartShifted, &parentsShifted, pEndShifted - pStartShifted, &childIDsShifted)); 8679566063dSJacob Faibussowitsch PetscCall(PetscSectionCreate(PetscObjectComm((PetscObject)dmNew), &pSecShifted)); 8689566063dSJacob Faibussowitsch PetscCall(PetscSectionSetChart(pSecShifted, pStartShifted, pEndShifted)); 869ca04dac2SToby Isaac for (p = pStartShifted; p < pEndShifted; p++) { 870fb4630b5SToby Isaac /* start off assuming no children */ 8719566063dSJacob Faibussowitsch PetscCall(PetscSectionSetDof(pSecShifted, p, 0)); 872fb4630b5SToby Isaac } 873fb4630b5SToby Isaac for (p = pStart; p < pEnd; p++) { 874fb4630b5SToby Isaac PetscInt dof; 875fb4630b5SToby Isaac PetscInt pNew = DMPlexShiftPoint_Internal(p, depth, depthShift); 876ca04dac2SToby Isaac 8779566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(pSec, p, &dof)); 8789566063dSJacob Faibussowitsch PetscCall(PetscSectionSetDof(pSecShifted, pNew, dof)); 879ca04dac2SToby Isaac } 8809566063dSJacob Faibussowitsch PetscCall(PetscSectionSetUp(pSecShifted)); 881fb4630b5SToby Isaac for (p = pStart; p < pEnd; p++) { 882fb4630b5SToby Isaac PetscInt dof; 883fb4630b5SToby Isaac PetscInt pNew = DMPlexShiftPoint_Internal(p, depth, depthShift); 884fb4630b5SToby Isaac 8859566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(pSec, p, &dof)); 886fb4630b5SToby Isaac if (dof) { 887fb4630b5SToby Isaac PetscInt off, offNew; 888fb4630b5SToby Isaac 8899566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(pSec, p, &off)); 8909566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(pSecShifted, pNew, &offNew)); 891fb4630b5SToby Isaac parentsShifted[offNew] = DMPlexShiftPoint_Internal(parents[off], depth, depthShift); 892fb4630b5SToby Isaac childIDsShifted[offNew] = childIDs[off]; 893fb4630b5SToby Isaac } 894fb4630b5SToby Isaac } 8959566063dSJacob Faibussowitsch PetscCall(DMPlexSetTree(dmNew, pSecShifted, parentsShifted, childIDsShifted)); 8969566063dSJacob Faibussowitsch PetscCall(PetscFree2(parentsShifted, childIDsShifted)); 8979566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&pSecShifted)); 898ca04dac2SToby Isaac } 8993ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 900ca04dac2SToby Isaac } 901ca04dac2SToby Isaac 902d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexConstructGhostCells_Internal(DM dm, DMLabel label, PetscInt *numGhostCells, DM gdm) 903d71ae5a4SJacob Faibussowitsch { 904da97024aSMatthew G. Knepley PetscSF sf; 905cd0c2139SMatthew G Knepley IS valueIS; 906da97024aSMatthew G. Knepley const PetscInt *values, *leaves; 907cd0c2139SMatthew G Knepley PetscInt *depthShift; 9082582d50cSToby Isaac PetscInt d, depth = 0, nleaves, loc, Ng, numFS, fs, fStart, fEnd, ghostCell, cEnd, c; 9094fb89dddSMatthew G. Knepley const PetscReal *maxCell, *Lstart, *L; 910cd0c2139SMatthew G Knepley 911cd0c2139SMatthew G Knepley PetscFunctionBegin; 9129566063dSJacob Faibussowitsch PetscCall(DMGetPointSF(dm, &sf)); 9139566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(sf, NULL, &nleaves, &leaves, NULL)); 914da97024aSMatthew G. Knepley nleaves = PetscMax(0, nleaves); 9159566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(dm, 1, &fStart, &fEnd)); 916cd0c2139SMatthew G Knepley /* Count ghost cells */ 9179566063dSJacob Faibussowitsch PetscCall(DMLabelGetValueIS(label, &valueIS)); 9189566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(valueIS, &numFS)); 9199566063dSJacob Faibussowitsch PetscCall(ISGetIndices(valueIS, &values)); 9204a6cfa73SMatthew G. Knepley Ng = 0; 921cd0c2139SMatthew G Knepley for (fs = 0; fs < numFS; ++fs) { 92246c796b9SMatthew G. Knepley IS faceIS; 92346c796b9SMatthew G. Knepley const PetscInt *faces; 92446c796b9SMatthew G. Knepley PetscInt numFaces, f, numBdFaces = 0; 925cd0c2139SMatthew G Knepley 9269566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(label, values[fs], &faceIS)); 9279566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(faceIS, &numFaces)); 9289566063dSJacob Faibussowitsch PetscCall(ISGetIndices(faceIS, &faces)); 92946c796b9SMatthew G. Knepley for (f = 0; f < numFaces; ++f) { 930ca04dac2SToby Isaac PetscInt numChildren; 931ca04dac2SToby Isaac 9329566063dSJacob Faibussowitsch PetscCall(PetscFindInt(faces[f], nleaves, leaves, &loc)); 9339566063dSJacob Faibussowitsch PetscCall(DMPlexGetTreeChildren(dm, faces[f], &numChildren, NULL)); 934ca04dac2SToby Isaac /* non-local and ancestors points don't get to register ghosts */ 935ca04dac2SToby Isaac if (loc >= 0 || numChildren) continue; 93646c796b9SMatthew G. Knepley if ((faces[f] >= fStart) && (faces[f] < fEnd)) ++numBdFaces; 93746c796b9SMatthew G. Knepley } 9384a6cfa73SMatthew G. Knepley Ng += numBdFaces; 9399566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(faceIS, &faces)); 9409566063dSJacob Faibussowitsch PetscCall(ISDestroy(&faceIS)); 941cd0c2139SMatthew G Knepley } 9429566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepth(dm, &depth)); 9439566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(2 * (depth + 1), &depthShift)); 9442582d50cSToby Isaac for (d = 0; d <= depth; d++) { 94559eef20bSToby Isaac PetscInt dEnd; 9462582d50cSToby Isaac 9479566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthStratum(dm, d, NULL, &dEnd)); 94859eef20bSToby Isaac depthShift[2 * d] = dEnd; 9492582d50cSToby Isaac depthShift[2 * d + 1] = 0; 9502582d50cSToby Isaac } 9512582d50cSToby Isaac if (depth >= 0) depthShift[2 * depth + 1] = Ng; 9529566063dSJacob Faibussowitsch PetscCall(DMPlexShiftPointSetUp_Internal(depth, depthShift)); 9539566063dSJacob Faibussowitsch PetscCall(DMPlexShiftSizes_Internal(dm, depthShift, gdm)); 954cd0c2139SMatthew G Knepley /* Step 3: Set cone/support sizes for new points */ 9559566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(dm, 0, NULL, &cEnd)); 95648a46eb9SPierre Jolivet for (c = cEnd; c < cEnd + Ng; ++c) PetscCall(DMPlexSetConeSize(gdm, c, 1)); 957cd0c2139SMatthew G Knepley for (fs = 0; fs < numFS; ++fs) { 958cd0c2139SMatthew G Knepley IS faceIS; 959cd0c2139SMatthew G Knepley const PetscInt *faces; 960cd0c2139SMatthew G Knepley PetscInt numFaces, f; 961cd0c2139SMatthew G Knepley 9629566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(label, values[fs], &faceIS)); 9639566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(faceIS, &numFaces)); 9649566063dSJacob Faibussowitsch PetscCall(ISGetIndices(faceIS, &faces)); 965cd0c2139SMatthew G Knepley for (f = 0; f < numFaces; ++f) { 966ca04dac2SToby Isaac PetscInt size, numChildren; 967cd0c2139SMatthew G Knepley 9689566063dSJacob Faibussowitsch PetscCall(PetscFindInt(faces[f], nleaves, leaves, &loc)); 9699566063dSJacob Faibussowitsch PetscCall(DMPlexGetTreeChildren(dm, faces[f], &numChildren, NULL)); 970ca04dac2SToby Isaac if (loc >= 0 || numChildren) continue; 97146c796b9SMatthew G. Knepley if ((faces[f] < fStart) || (faces[f] >= fEnd)) continue; 9729566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dm, faces[f], &size)); 97363a3b9bcSJacob Faibussowitsch PetscCheck(size == 1, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "DM has boundary face %" PetscInt_FMT " with %" PetscInt_FMT " support cells", faces[f], size); 9749566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupportSize(gdm, faces[f] + Ng, 2)); 975cd0c2139SMatthew G Knepley } 9769566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(faceIS, &faces)); 9779566063dSJacob Faibussowitsch PetscCall(ISDestroy(&faceIS)); 978cd0c2139SMatthew G Knepley } 979cd0c2139SMatthew G Knepley /* Step 4: Setup ghosted DM */ 9809566063dSJacob Faibussowitsch PetscCall(DMSetUp(gdm)); 9819566063dSJacob Faibussowitsch PetscCall(DMPlexShiftPoints_Internal(dm, depthShift, gdm)); 982cd0c2139SMatthew G Knepley /* Step 6: Set cones and supports for new points */ 983cd0c2139SMatthew G Knepley ghostCell = cEnd; 984cd0c2139SMatthew G Knepley for (fs = 0; fs < numFS; ++fs) { 985cd0c2139SMatthew G Knepley IS faceIS; 986cd0c2139SMatthew G Knepley const PetscInt *faces; 987cd0c2139SMatthew G Knepley PetscInt numFaces, f; 988cd0c2139SMatthew G Knepley 9899566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(label, values[fs], &faceIS)); 9909566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(faceIS, &numFaces)); 9919566063dSJacob Faibussowitsch PetscCall(ISGetIndices(faceIS, &faces)); 99246c796b9SMatthew G. Knepley for (f = 0; f < numFaces; ++f) { 993ca04dac2SToby Isaac PetscInt newFace = faces[f] + Ng, numChildren; 994cd0c2139SMatthew G Knepley 9959566063dSJacob Faibussowitsch PetscCall(PetscFindInt(faces[f], nleaves, leaves, &loc)); 9969566063dSJacob Faibussowitsch PetscCall(DMPlexGetTreeChildren(dm, faces[f], &numChildren, NULL)); 997ca04dac2SToby Isaac if (loc >= 0 || numChildren) continue; 99846c796b9SMatthew G. Knepley if ((faces[f] < fStart) || (faces[f] >= fEnd)) continue; 9999566063dSJacob Faibussowitsch PetscCall(DMPlexSetCone(gdm, ghostCell, &newFace)); 10009566063dSJacob Faibussowitsch PetscCall(DMPlexInsertSupport(gdm, newFace, 1, ghostCell)); 100146c796b9SMatthew G. Knepley ++ghostCell; 1002cd0c2139SMatthew G Knepley } 10039566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(faceIS, &faces)); 10049566063dSJacob Faibussowitsch PetscCall(ISDestroy(&faceIS)); 1005cd0c2139SMatthew G Knepley } 10069566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(valueIS, &values)); 10079566063dSJacob Faibussowitsch PetscCall(ISDestroy(&valueIS)); 10089566063dSJacob Faibussowitsch PetscCall(DMPlexShiftCoordinates_Internal(dm, depthShift, gdm)); 10099566063dSJacob Faibussowitsch PetscCall(DMPlexShiftSF_Internal(dm, depthShift, gdm)); 10109566063dSJacob Faibussowitsch PetscCall(DMPlexShiftLabels_Internal(dm, depthShift, gdm)); 10119566063dSJacob Faibussowitsch PetscCall(DMPlexCreateVTKLabel_Internal(dm, PETSC_TRUE, gdm)); 10129566063dSJacob Faibussowitsch PetscCall(DMPlexShiftTree_Internal(dm, depthShift, gdm)); 10139566063dSJacob Faibussowitsch PetscCall(PetscFree(depthShift)); 101448a46eb9SPierre Jolivet for (c = cEnd; c < cEnd + Ng; ++c) PetscCall(DMPlexSetCellType(gdm, c, DM_POLYTOPE_FV_GHOST)); 1015966c7b3fSMatthew G. Knepley /* Step 7: Periodicity */ 10164fb89dddSMatthew G. Knepley PetscCall(DMGetPeriodicity(dm, &maxCell, &Lstart, &L)); 10174fb89dddSMatthew G. Knepley PetscCall(DMSetPeriodicity(gdm, maxCell, Lstart, L)); 10184a6cfa73SMatthew G. Knepley if (numGhostCells) *numGhostCells = Ng; 10193ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1020cd0c2139SMatthew G Knepley } 1021cd0c2139SMatthew G Knepley 1022cd0c2139SMatthew G Knepley /*@C 1023cd0c2139SMatthew G Knepley DMPlexConstructGhostCells - Construct ghost cells which connect to every boundary face 1024cd0c2139SMatthew G Knepley 102520f4b53cSBarry Smith Collective 1026cd0c2139SMatthew G Knepley 1027cd0c2139SMatthew G Knepley Input Parameters: 102820f4b53cSBarry Smith + dm - The original `DM` 102920f4b53cSBarry Smith - labelName - The label specifying the boundary faces, or "Face Sets" if this is `NULL` 1030cd0c2139SMatthew G Knepley 1031cd0c2139SMatthew G Knepley Output Parameters: 103220f4b53cSBarry Smith + numGhostCells - The number of ghost cells added to the `DM` 103320f4b53cSBarry Smith - dmGhosted - The new `DM` 1034cd0c2139SMatthew G Knepley 1035cd0c2139SMatthew G Knepley Level: developer 1036cd0c2139SMatthew G Knepley 103720f4b53cSBarry Smith Note: 103820f4b53cSBarry Smith If no label exists of that name, one will be created marking all boundary faces 103920f4b53cSBarry Smith 10401cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMCreate()` 104131266bc0SMatthew G. Knepley @*/ 1042d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexConstructGhostCells(DM dm, const char labelName[], PetscInt *numGhostCells, DM *dmGhosted) 1043d71ae5a4SJacob Faibussowitsch { 1044cd0c2139SMatthew G Knepley DM gdm; 1045cd0c2139SMatthew G Knepley DMLabel label; 1046cd0c2139SMatthew G Knepley const char *name = labelName ? labelName : "Face Sets"; 1047412e9a14SMatthew G. Knepley PetscInt dim, Ng = 0; 1048b0441da4SMatthew G. Knepley PetscBool useCone, useClosure; 1049cd0c2139SMatthew G Knepley 1050cd0c2139SMatthew G Knepley PetscFunctionBegin; 1051cd0c2139SMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 10524f572ea9SToby Isaac if (numGhostCells) PetscAssertPointer(numGhostCells, 3); 10534f572ea9SToby Isaac PetscAssertPointer(dmGhosted, 4); 10549566063dSJacob Faibussowitsch PetscCall(DMCreate(PetscObjectComm((PetscObject)dm), &gdm)); 10559566063dSJacob Faibussowitsch PetscCall(DMSetType(gdm, DMPLEX)); 10569566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 10579566063dSJacob Faibussowitsch PetscCall(DMSetDimension(gdm, dim)); 10589566063dSJacob Faibussowitsch PetscCall(DMGetBasicAdjacency(dm, &useCone, &useClosure)); 10599566063dSJacob Faibussowitsch PetscCall(DMSetBasicAdjacency(gdm, useCone, useClosure)); 10609566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, name, &label)); 1061cd0c2139SMatthew G Knepley if (!label) { 1062cd0c2139SMatthew G Knepley /* Get label for boundary faces */ 10639566063dSJacob Faibussowitsch PetscCall(DMCreateLabel(dm, name)); 10649566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, name, &label)); 10659566063dSJacob Faibussowitsch PetscCall(DMPlexMarkBoundaryFaces(dm, 1, label)); 1066cd0c2139SMatthew G Knepley } 10679566063dSJacob Faibussowitsch PetscCall(DMPlexConstructGhostCells_Internal(dm, label, &Ng, gdm)); 10689566063dSJacob Faibussowitsch PetscCall(DMCopyDisc(dm, gdm)); 10695de52c6dSVaclav Hapla PetscCall(DMPlexCopy_Internal(dm, PETSC_TRUE, PETSC_TRUE, gdm)); 1070cad26855SMatthew G. Knepley gdm->setfromoptionscalled = dm->setfromoptionscalled; 1071d80ece95SMatthew G. Knepley if (numGhostCells) *numGhostCells = Ng; 1072cd0c2139SMatthew G Knepley *dmGhosted = gdm; 10733ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1074cd0c2139SMatthew G Knepley } 1075cd0c2139SMatthew G Knepley 1076d71ae5a4SJacob Faibussowitsch static PetscErrorCode DivideCells_Private(DM dm, DMLabel label, DMPlexPointQueue queue) 1077d71ae5a4SJacob Faibussowitsch { 1078accc9626SMatthew G. Knepley PetscInt dim, d, shift = 100, *pStart, *pEnd; 1079accc9626SMatthew G. Knepley 1080accc9626SMatthew G. Knepley PetscFunctionBegin; 1081accc9626SMatthew G. Knepley PetscCall(DMGetDimension(dm, &dim)); 1082accc9626SMatthew G. Knepley PetscCall(PetscMalloc2(dim, &pStart, dim, &pEnd)); 108348a46eb9SPierre Jolivet for (d = 0; d < dim; ++d) PetscCall(DMPlexGetDepthStratum(dm, d, &pStart[d], &pEnd[d])); 1084accc9626SMatthew G. Knepley while (!DMPlexPointQueueEmpty(queue)) { 1085accc9626SMatthew G. Knepley PetscInt cell = -1; 1086accc9626SMatthew G. Knepley PetscInt *closure = NULL; 1087accc9626SMatthew G. Knepley PetscInt closureSize, cl, cval; 1088accc9626SMatthew G. Knepley 1089accc9626SMatthew G. Knepley PetscCall(DMPlexPointQueueDequeue(queue, &cell)); 1090accc9626SMatthew G. Knepley PetscCall(DMLabelGetValue(label, cell, &cval)); 1091accc9626SMatthew G. Knepley PetscCall(DMPlexGetTransitiveClosure(dm, cell, PETSC_TRUE, &closureSize, &closure)); 1092accc9626SMatthew G. Knepley /* Mark points in the cell closure that touch the fault */ 1093accc9626SMatthew G. Knepley for (d = 0; d < dim; ++d) { 1094accc9626SMatthew G. Knepley for (cl = 0; cl < closureSize * 2; cl += 2) { 1095accc9626SMatthew G. Knepley const PetscInt clp = closure[cl]; 1096accc9626SMatthew G. Knepley PetscInt clval; 1097accc9626SMatthew G. Knepley 1098accc9626SMatthew G. Knepley if ((clp < pStart[d]) || (clp >= pEnd[d])) continue; 1099accc9626SMatthew G. Knepley PetscCall(DMLabelGetValue(label, clp, &clval)); 1100accc9626SMatthew G. Knepley if (clval == -1) { 1101accc9626SMatthew G. Knepley const PetscInt *cone; 1102accc9626SMatthew G. Knepley PetscInt coneSize, c; 1103accc9626SMatthew G. Knepley 1104accc9626SMatthew G. Knepley /* If a cone point touches the fault, then this point touches the fault */ 1105accc9626SMatthew G. Knepley PetscCall(DMPlexGetCone(dm, clp, &cone)); 1106accc9626SMatthew G. Knepley PetscCall(DMPlexGetConeSize(dm, clp, &coneSize)); 1107accc9626SMatthew G. Knepley for (c = 0; c < coneSize; ++c) { 1108accc9626SMatthew G. Knepley PetscInt cpval; 1109accc9626SMatthew G. Knepley 1110accc9626SMatthew G. Knepley PetscCall(DMLabelGetValue(label, cone[c], &cpval)); 1111accc9626SMatthew G. Knepley if (cpval != -1) { 1112accc9626SMatthew G. Knepley PetscInt dep; 1113accc9626SMatthew G. Knepley 1114accc9626SMatthew G. Knepley PetscCall(DMPlexGetPointDepth(dm, clp, &dep)); 1115accc9626SMatthew G. Knepley clval = cval < 0 ? -(shift + dep) : shift + dep; 1116accc9626SMatthew G. Knepley PetscCall(DMLabelSetValue(label, clp, clval)); 1117accc9626SMatthew G. Knepley break; 1118accc9626SMatthew G. Knepley } 1119accc9626SMatthew G. Knepley } 1120accc9626SMatthew G. Knepley } 1121accc9626SMatthew G. Knepley /* Mark neighbor cells through marked faces (these cells must also touch the fault) */ 1122accc9626SMatthew G. Knepley if (d == dim - 1 && clval != -1) { 1123accc9626SMatthew G. Knepley const PetscInt *support; 1124accc9626SMatthew G. Knepley PetscInt supportSize, s, nval; 1125accc9626SMatthew G. Knepley 1126accc9626SMatthew G. Knepley PetscCall(DMPlexGetSupport(dm, clp, &support)); 1127accc9626SMatthew G. Knepley PetscCall(DMPlexGetSupportSize(dm, clp, &supportSize)); 1128accc9626SMatthew G. Knepley for (s = 0; s < supportSize; ++s) { 1129accc9626SMatthew G. Knepley PetscCall(DMLabelGetValue(label, support[s], &nval)); 1130accc9626SMatthew G. Knepley if (nval == -1) { 1131accc9626SMatthew G. Knepley PetscCall(DMLabelSetValue(label, support[s], clval < 0 ? clval - 1 : clval + 1)); 1132accc9626SMatthew G. Knepley PetscCall(DMPlexPointQueueEnqueue(queue, support[s])); 1133accc9626SMatthew G. Knepley } 1134accc9626SMatthew G. Knepley } 1135accc9626SMatthew G. Knepley } 1136accc9626SMatthew G. Knepley } 1137accc9626SMatthew G. Knepley } 1138accc9626SMatthew G. Knepley PetscCall(DMPlexRestoreTransitiveClosure(dm, cell, PETSC_TRUE, &closureSize, &closure)); 1139accc9626SMatthew G. Knepley } 1140accc9626SMatthew G. Knepley PetscCall(PetscFree2(pStart, pEnd)); 11413ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1142accc9626SMatthew G. Knepley } 1143accc9626SMatthew G. Knepley 1144accc9626SMatthew G. Knepley typedef struct { 1145accc9626SMatthew G. Knepley DM dm; 1146accc9626SMatthew G. Knepley DMPlexPointQueue queue; 1147accc9626SMatthew G. Knepley } PointDivision; 1148accc9626SMatthew G. Knepley 1149d71ae5a4SJacob Faibussowitsch static PetscErrorCode divideCell(DMLabel label, PetscInt p, PetscInt val, void *ctx) 1150d71ae5a4SJacob Faibussowitsch { 1151accc9626SMatthew G. Knepley PointDivision *div = (PointDivision *)ctx; 1152accc9626SMatthew G. Knepley PetscInt cval = val < 0 ? val - 1 : val + 1; 1153accc9626SMatthew G. Knepley const PetscInt *support; 1154accc9626SMatthew G. Knepley PetscInt supportSize, s; 1155accc9626SMatthew G. Knepley 1156accc9626SMatthew G. Knepley PetscFunctionBegin; 1157accc9626SMatthew G. Knepley PetscCall(DMPlexGetSupport(div->dm, p, &support)); 1158accc9626SMatthew G. Knepley PetscCall(DMPlexGetSupportSize(div->dm, p, &supportSize)); 1159accc9626SMatthew G. Knepley for (s = 0; s < supportSize; ++s) { 1160accc9626SMatthew G. Knepley PetscCall(DMLabelSetValue(label, support[s], cval)); 1161accc9626SMatthew G. Knepley PetscCall(DMPlexPointQueueEnqueue(div->queue, support[s])); 1162accc9626SMatthew G. Knepley } 11633ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1164accc9626SMatthew G. Knepley } 1165accc9626SMatthew G. Knepley 1166accc9626SMatthew G. Knepley /* Mark cells by label propagation */ 1167d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexLabelFaultHalo(DM dm, DMLabel faultLabel) 1168d71ae5a4SJacob Faibussowitsch { 1169accc9626SMatthew G. Knepley DMPlexPointQueue queue = NULL; 1170accc9626SMatthew G. Knepley PointDivision div; 1171accc9626SMatthew G. Knepley PetscSF pointSF; 1172accc9626SMatthew G. Knepley IS pointIS; 1173accc9626SMatthew G. Knepley const PetscInt *points; 1174accc9626SMatthew G. Knepley PetscBool empty; 1175accc9626SMatthew G. Knepley PetscInt dim, shift = 100, n, i; 1176accc9626SMatthew G. Knepley 1177accc9626SMatthew G. Knepley PetscFunctionBegin; 1178accc9626SMatthew G. Knepley PetscCall(DMGetDimension(dm, &dim)); 1179accc9626SMatthew G. Knepley PetscCall(DMPlexPointQueueCreate(1024, &queue)); 1180accc9626SMatthew G. Knepley div.dm = dm; 1181accc9626SMatthew G. Knepley div.queue = queue; 1182accc9626SMatthew G. Knepley /* Enqueue cells on fault */ 1183accc9626SMatthew G. Knepley PetscCall(DMLabelGetStratumIS(faultLabel, shift + dim, &pointIS)); 1184accc9626SMatthew G. Knepley if (pointIS) { 1185accc9626SMatthew G. Knepley PetscCall(ISGetLocalSize(pointIS, &n)); 1186accc9626SMatthew G. Knepley PetscCall(ISGetIndices(pointIS, &points)); 118748a46eb9SPierre Jolivet for (i = 0; i < n; ++i) PetscCall(DMPlexPointQueueEnqueue(queue, points[i])); 1188accc9626SMatthew G. Knepley PetscCall(ISRestoreIndices(pointIS, &points)); 1189accc9626SMatthew G. Knepley PetscCall(ISDestroy(&pointIS)); 1190accc9626SMatthew G. Knepley } 1191accc9626SMatthew G. Knepley PetscCall(DMLabelGetStratumIS(faultLabel, -(shift + dim), &pointIS)); 1192accc9626SMatthew G. Knepley if (pointIS) { 1193accc9626SMatthew G. Knepley PetscCall(ISGetLocalSize(pointIS, &n)); 1194accc9626SMatthew G. Knepley PetscCall(ISGetIndices(pointIS, &points)); 119548a46eb9SPierre Jolivet for (i = 0; i < n; ++i) PetscCall(DMPlexPointQueueEnqueue(queue, points[i])); 1196accc9626SMatthew G. Knepley PetscCall(ISRestoreIndices(pointIS, &points)); 1197accc9626SMatthew G. Knepley PetscCall(ISDestroy(&pointIS)); 1198accc9626SMatthew G. Knepley } 1199accc9626SMatthew G. Knepley 1200accc9626SMatthew G. Knepley PetscCall(DMGetPointSF(dm, &pointSF)); 1201accc9626SMatthew G. Knepley PetscCall(DMLabelPropagateBegin(faultLabel, pointSF)); 1202accc9626SMatthew G. Knepley /* While edge queue is not empty: */ 1203accc9626SMatthew G. Knepley PetscCall(DMPlexPointQueueEmptyCollective((PetscObject)dm, queue, &empty)); 1204accc9626SMatthew G. Knepley while (!empty) { 1205accc9626SMatthew G. Knepley PetscCall(DivideCells_Private(dm, faultLabel, queue)); 1206accc9626SMatthew G. Knepley PetscCall(DMLabelPropagatePush(faultLabel, pointSF, divideCell, &div)); 1207accc9626SMatthew G. Knepley PetscCall(DMPlexPointQueueEmptyCollective((PetscObject)dm, queue, &empty)); 1208accc9626SMatthew G. Knepley } 1209accc9626SMatthew G. Knepley PetscCall(DMLabelPropagateEnd(faultLabel, pointSF)); 1210accc9626SMatthew G. Knepley PetscCall(DMPlexPointQueueDestroy(&queue)); 12113ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1212accc9626SMatthew G. Knepley } 1213accc9626SMatthew G. Knepley 1214607ab7a9SMatthew G. Knepley /* 1215faedd622SMatthew G. Knepley We are adding three kinds of points here: 1216607ab7a9SMatthew G. Knepley Replicated: Copies of points which exist in the mesh, such as vertices identified across a fault 1217faedd622SMatthew G. Knepley Non-replicated: Points which exist on the fault, but are not replicated 1218b6dfa339SMatthew G. Knepley Ghost: These are shared fault faces which are not owned by this process. These do not produce hybrid cells and do not replicate 1219607ab7a9SMatthew G. Knepley Hybrid: Entirely new points, such as cohesive cells 1220a6ae58d1SMatthew G. Knepley 1221a6ae58d1SMatthew G. Knepley When creating subsequent cohesive cells, we shift the old hybrid cells to the end of the numbering at 1222a6ae58d1SMatthew G. Knepley each depth so that the new split/hybrid points can be inserted as a block. 1223607ab7a9SMatthew G. Knepley */ 1224d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexConstructCohesiveCells_Internal(DM dm, DMLabel label, DMLabel splitLabel, DM sdm) 1225d71ae5a4SJacob Faibussowitsch { 1226cd0c2139SMatthew G Knepley MPI_Comm comm; 1227607ab7a9SMatthew G. Knepley IS valueIS; 1228607ab7a9SMatthew G. Knepley PetscInt numSP = 0; /* The number of depths for which we have replicated points */ 1229607ab7a9SMatthew G. Knepley const PetscInt *values; /* List of depths for which we have replicated points */ 123018c5995bSMatthew G. Knepley IS *splitIS; 123118c5995bSMatthew G. Knepley IS *unsplitIS; 1232b6dfa339SMatthew G. Knepley IS ghostIS; 1233607ab7a9SMatthew G. Knepley PetscInt *numSplitPoints; /* The number of replicated points at each depth */ 123418c5995bSMatthew G. Knepley PetscInt *numUnsplitPoints; /* The number of non-replicated points at each depth which still give rise to hybrid points */ 123536dbac82SMatthew G. Knepley PetscInt *numHybridPoints; /* The number of new hybrid points at each depth */ 123636dbac82SMatthew G. Knepley PetscInt *numHybridPointsOld; /* The number of existing hybrid points at each depth */ 1237b6dfa339SMatthew G. Knepley PetscInt numGhostPoints; /* The number of unowned, shared fault faces */ 1238607ab7a9SMatthew G. Knepley const PetscInt **splitPoints; /* Replicated points for each depth */ 123918c5995bSMatthew G. Knepley const PetscInt **unsplitPoints; /* Non-replicated points for each depth */ 1240b6dfa339SMatthew G. Knepley const PetscInt *ghostPoints; /* Ghost fault faces */ 1241cd0c2139SMatthew G Knepley PetscSection coordSection; 1242cd0c2139SMatthew G Knepley Vec coordinates; 1243cd0c2139SMatthew G Knepley PetscScalar *coords; 1244a6ae58d1SMatthew G. Knepley PetscInt *depthMax; /* The first hybrid point at each depth in the original mesh */ 1245a6ae58d1SMatthew G. Knepley PetscInt *depthEnd; /* The point limit at each depth in the original mesh */ 1246607ab7a9SMatthew G. Knepley PetscInt *depthShift; /* Number of replicated+hybrid points at each depth */ 1247607ab7a9SMatthew G. Knepley PetscInt *pMaxNew; /* The first replicated point at each depth in the new mesh, hybrids come after this */ 1248607ab7a9SMatthew G. Knepley PetscInt *coneNew, *coneONew, *supportNew; 124918c5995bSMatthew G. Knepley PetscInt shift = 100, shift2 = 200, depth = 0, dep, dim, d, sp, maxConeSize, maxSupportSize, maxConeSizeNew, maxSupportSizeNew, numLabels, vStart, vEnd, pEnd, p, v; 1250cd0c2139SMatthew G Knepley 1251cd0c2139SMatthew G Knepley PetscFunctionBegin; 12529566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)dm, &comm)); 12539566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 12549566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepth(dm, &depth)); 12559566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthStratum(dm, 0, &vStart, &vEnd)); 1256412e9a14SMatthew G. Knepley /* We do not want this label automatically computed, instead we compute it here */ 12579566063dSJacob Faibussowitsch PetscCall(DMCreateLabel(sdm, "celltype")); 1258cd0c2139SMatthew G Knepley /* Count split points and add cohesive cells */ 12599566063dSJacob Faibussowitsch PetscCall(DMPlexGetMaxSizes(dm, &maxConeSize, &maxSupportSize)); 12609566063dSJacob Faibussowitsch PetscCall(PetscMalloc5(depth + 1, &depthMax, depth + 1, &depthEnd, 2 * (depth + 1), &depthShift, depth + 1, &pMaxNew, depth + 1, &numHybridPointsOld)); 12619566063dSJacob Faibussowitsch PetscCall(PetscMalloc7(depth + 1, &splitIS, depth + 1, &unsplitIS, depth + 1, &numSplitPoints, depth + 1, &numUnsplitPoints, depth + 1, &numHybridPoints, depth + 1, &splitPoints, depth + 1, &unsplitPoints)); 1262607ab7a9SMatthew G. Knepley for (d = 0; d <= depth; ++d) { 12639566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthStratum(dm, d, NULL, &pMaxNew[d])); 12649566063dSJacob Faibussowitsch PetscCall(DMPlexGetTensorPrismBounds_Internal(dm, d, &depthMax[d], NULL)); 1265a6ae58d1SMatthew G. Knepley depthEnd[d] = pMaxNew[d]; 1266a6ae58d1SMatthew G. Knepley depthMax[d] = depthMax[d] < 0 ? depthEnd[d] : depthMax[d]; 1267607ab7a9SMatthew G. Knepley numSplitPoints[d] = 0; 126818c5995bSMatthew G. Knepley numUnsplitPoints[d] = 0; 1269607ab7a9SMatthew G. Knepley numHybridPoints[d] = 0; 1270a6ae58d1SMatthew G. Knepley numHybridPointsOld[d] = depthMax[d] < 0 ? 0 : depthEnd[d] - depthMax[d]; 1271607ab7a9SMatthew G. Knepley splitPoints[d] = NULL; 127218c5995bSMatthew G. Knepley unsplitPoints[d] = NULL; 127318c5995bSMatthew G. Knepley splitIS[d] = NULL; 127418c5995bSMatthew G. Knepley unsplitIS[d] = NULL; 127559eef20bSToby Isaac /* we are shifting the existing hybrid points with the stratum behind them, so 127659eef20bSToby Isaac * the split comes at the end of the normal points, i.e., at depthMax[d] */ 127759eef20bSToby Isaac depthShift[2 * d] = depthMax[d]; 127859eef20bSToby Isaac depthShift[2 * d + 1] = 0; 1279607ab7a9SMatthew G. Knepley } 1280b6dfa339SMatthew G. Knepley numGhostPoints = 0; 1281b6dfa339SMatthew G. Knepley ghostPoints = NULL; 1282cd0c2139SMatthew G Knepley if (label) { 12839566063dSJacob Faibussowitsch PetscCall(DMLabelGetValueIS(label, &valueIS)); 12849566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(valueIS, &numSP)); 12859566063dSJacob Faibussowitsch PetscCall(ISGetIndices(valueIS, &values)); 1286cd0c2139SMatthew G Knepley } 1287cd0c2139SMatthew G Knepley for (sp = 0; sp < numSP; ++sp) { 1288cd0c2139SMatthew G Knepley const PetscInt dep = values[sp]; 1289cd0c2139SMatthew G Knepley 1290cd0c2139SMatthew G Knepley if ((dep < 0) || (dep > depth)) continue; 12919566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(label, dep, &splitIS[dep])); 129218c5995bSMatthew G. Knepley if (splitIS[dep]) { 12939566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(splitIS[dep], &numSplitPoints[dep])); 12949566063dSJacob Faibussowitsch PetscCall(ISGetIndices(splitIS[dep], &splitPoints[dep])); 129518c5995bSMatthew G. Knepley } 12969566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(label, shift2 + dep, &unsplitIS[dep])); 129718c5995bSMatthew G. Knepley if (unsplitIS[dep]) { 12989566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(unsplitIS[dep], &numUnsplitPoints[dep])); 12999566063dSJacob Faibussowitsch PetscCall(ISGetIndices(unsplitIS[dep], &unsplitPoints[dep])); 1300cd0c2139SMatthew G Knepley } 1301cd0c2139SMatthew G Knepley } 1302b6dfa339SMatthew G. Knepley PetscCall(DMLabelGetStratumIS(label, shift2 + dim - 1, &ghostIS)); 1303b6dfa339SMatthew G. Knepley if (ghostIS) { 1304b6dfa339SMatthew G. Knepley PetscCall(ISGetLocalSize(ghostIS, &numGhostPoints)); 1305b6dfa339SMatthew G. Knepley PetscCall(ISGetIndices(ghostIS, &ghostPoints)); 1306b6dfa339SMatthew G. Knepley } 1307607ab7a9SMatthew G. Knepley /* Calculate number of hybrid points */ 130818c5995bSMatthew G. Knepley for (d = 1; d <= depth; ++d) numHybridPoints[d] = numSplitPoints[d - 1] + numUnsplitPoints[d - 1]; /* There is a hybrid cell/face/edge for every split face/edge/vertex */ 13092582d50cSToby Isaac for (d = 0; d <= depth; ++d) depthShift[2 * d + 1] = numSplitPoints[d] + numHybridPoints[d]; 13109566063dSJacob Faibussowitsch PetscCall(DMPlexShiftPointSetUp_Internal(depth, depthShift)); 131159eef20bSToby Isaac /* the end of the points in this stratum that come before the new points: 131259eef20bSToby Isaac * shifting pMaxNew[d] gets the new start of the next stratum, then count back the old hybrid points and the newly 131359eef20bSToby Isaac * added points */ 13142582d50cSToby Isaac for (d = 0; d <= depth; ++d) pMaxNew[d] = DMPlexShiftPoint_Internal(pMaxNew[d], depth, depthShift) - (numHybridPointsOld[d] + numSplitPoints[d] + numHybridPoints[d]); 13159566063dSJacob Faibussowitsch PetscCall(DMPlexShiftSizes_Internal(dm, depthShift, sdm)); 1316cd0c2139SMatthew G Knepley /* Step 3: Set cone/support sizes for new points */ 1317cd0c2139SMatthew G Knepley for (dep = 0; dep <= depth; ++dep) { 1318cd0c2139SMatthew G Knepley for (p = 0; p < numSplitPoints[dep]; ++p) { 1319cd0c2139SMatthew G Knepley const PetscInt oldp = splitPoints[dep][p]; 13202582d50cSToby Isaac const PetscInt newp = DMPlexShiftPoint_Internal(oldp, depth, depthShift) /*oldp + depthOffset[dep]*/; 13214c367dbcSMatthew G. Knepley const PetscInt splitp = p + pMaxNew[dep]; 1322cd0c2139SMatthew G Knepley const PetscInt *support; 1323394c2f0fSMatthew G. Knepley DMPolytopeType ct; 13244c367dbcSMatthew G. Knepley PetscInt coneSize, supportSize, qf, qn, qp, e; 1325cd0c2139SMatthew G Knepley 13269566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, oldp, &coneSize)); 13279566063dSJacob Faibussowitsch PetscCall(DMPlexSetConeSize(sdm, splitp, coneSize)); 13289566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dm, oldp, &supportSize)); 13299566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupportSize(sdm, splitp, supportSize)); 13309566063dSJacob Faibussowitsch PetscCall(DMPlexGetCellType(dm, oldp, &ct)); 13319566063dSJacob Faibussowitsch PetscCall(DMPlexSetCellType(sdm, splitp, ct)); 1332cd0c2139SMatthew G Knepley if (dep == depth - 1) { 13334c367dbcSMatthew G. Knepley const PetscInt hybcell = p + pMaxNew[dep + 1] + numSplitPoints[dep + 1]; 13344c367dbcSMatthew G. Knepley 1335cd0c2139SMatthew G Knepley /* Add cohesive cells, they are prisms */ 13369566063dSJacob Faibussowitsch PetscCall(DMPlexSetConeSize(sdm, hybcell, 2 + coneSize)); 1337412e9a14SMatthew G. Knepley switch (coneSize) { 1338d71ae5a4SJacob Faibussowitsch case 2: 1339d71ae5a4SJacob Faibussowitsch PetscCall(DMPlexSetCellType(sdm, hybcell, DM_POLYTOPE_SEG_PRISM_TENSOR)); 1340d71ae5a4SJacob Faibussowitsch break; 1341d71ae5a4SJacob Faibussowitsch case 3: 1342d71ae5a4SJacob Faibussowitsch PetscCall(DMPlexSetCellType(sdm, hybcell, DM_POLYTOPE_TRI_PRISM_TENSOR)); 1343d71ae5a4SJacob Faibussowitsch break; 1344d71ae5a4SJacob Faibussowitsch case 4: 1345d71ae5a4SJacob Faibussowitsch PetscCall(DMPlexSetCellType(sdm, hybcell, DM_POLYTOPE_QUAD_PRISM_TENSOR)); 1346d71ae5a4SJacob Faibussowitsch break; 1347412e9a14SMatthew G. Knepley } 1348b6dfa339SMatthew G. Knepley /* Shared fault faces with only one support cell now have two with the cohesive cell */ 1349b6dfa339SMatthew G. Knepley /* TODO Check thaat oldp has rootdegree == 1 */ 1350b6dfa339SMatthew G. Knepley if (supportSize == 1) { 1351b6dfa339SMatthew G. Knepley const PetscInt *support; 1352b6dfa339SMatthew G. Knepley PetscInt val; 1353b6dfa339SMatthew G. Knepley 1354b6dfa339SMatthew G. Knepley PetscCall(DMPlexGetSupport(dm, oldp, &support)); 1355b6dfa339SMatthew G. Knepley PetscCall(DMLabelGetValue(label, support[0], &val)); 1356b6dfa339SMatthew G. Knepley if (val < 0) PetscCall(DMPlexSetSupportSize(sdm, splitp, 2)); 1357b6dfa339SMatthew G. Knepley else PetscCall(DMPlexSetSupportSize(sdm, newp, 2)); 1358b6dfa339SMatthew G. Knepley } 1359cd0c2139SMatthew G Knepley } else if (dep == 0) { 13604c367dbcSMatthew G. Knepley const PetscInt hybedge = p + pMaxNew[dep + 1] + numSplitPoints[dep + 1]; 1361cd0c2139SMatthew G Knepley 13629566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(dm, oldp, &support)); 13634c367dbcSMatthew G. Knepley for (e = 0, qn = 0, qp = 0, qf = 0; e < supportSize; ++e) { 1364cd0c2139SMatthew G Knepley PetscInt val; 1365cd0c2139SMatthew G Knepley 13669566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, support[e], &val)); 13674c367dbcSMatthew G. Knepley if (val == 1) ++qf; 13684c367dbcSMatthew G. Knepley if ((val == 1) || (val == (shift + 1))) ++qn; 13694c367dbcSMatthew G. Knepley if ((val == 1) || (val == -(shift + 1))) ++qp; 1370cd0c2139SMatthew G Knepley } 13714c367dbcSMatthew G. Knepley /* Split old vertex: Edges into original vertex and new cohesive edge */ 13729566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupportSize(sdm, newp, qn + 1)); 13734c367dbcSMatthew G. Knepley /* Split new vertex: Edges into split vertex and new cohesive edge */ 13749566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupportSize(sdm, splitp, qp + 1)); 13754c367dbcSMatthew G. Knepley /* Add hybrid edge */ 13769566063dSJacob Faibussowitsch PetscCall(DMPlexSetConeSize(sdm, hybedge, 2)); 13779566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupportSize(sdm, hybedge, qf)); 13789566063dSJacob Faibussowitsch PetscCall(DMPlexSetCellType(sdm, hybedge, DM_POLYTOPE_POINT_PRISM_TENSOR)); 1379cd0c2139SMatthew G Knepley } else if (dep == dim - 2) { 13804c367dbcSMatthew G. Knepley const PetscInt hybface = p + pMaxNew[dep + 1] + numSplitPoints[dep + 1]; 13814c367dbcSMatthew G. Knepley 13829566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(dm, oldp, &support)); 13834c367dbcSMatthew G. Knepley for (e = 0, qn = 0, qp = 0, qf = 0; e < supportSize; ++e) { 1384cd0c2139SMatthew G Knepley PetscInt val; 1385cd0c2139SMatthew G Knepley 13869566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, support[e], &val)); 13874c367dbcSMatthew G. Knepley if (val == dim - 1) ++qf; 13884c367dbcSMatthew G. Knepley if ((val == dim - 1) || (val == (shift + dim - 1))) ++qn; 13894c367dbcSMatthew G. Knepley if ((val == dim - 1) || (val == -(shift + dim - 1))) ++qp; 1390cd0c2139SMatthew G Knepley } 13914c367dbcSMatthew G. Knepley /* Split old edge: Faces into original edge and cohesive face (positive side?) */ 13929566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupportSize(sdm, newp, qn + 1)); 13934c367dbcSMatthew G. Knepley /* Split new edge: Faces into split edge and cohesive face (negative side?) */ 13949566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupportSize(sdm, splitp, qp + 1)); 13954c367dbcSMatthew G. Knepley /* Add hybrid face */ 13969566063dSJacob Faibussowitsch PetscCall(DMPlexSetConeSize(sdm, hybface, 4)); 13979566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupportSize(sdm, hybface, qf)); 13989566063dSJacob Faibussowitsch PetscCall(DMPlexSetCellType(sdm, hybface, DM_POLYTOPE_SEG_PRISM_TENSOR)); 1399cd0c2139SMatthew G Knepley } 1400cd0c2139SMatthew G Knepley } 1401cd0c2139SMatthew G Knepley } 140218c5995bSMatthew G. Knepley for (dep = 0; dep <= depth; ++dep) { 140318c5995bSMatthew G. Knepley for (p = 0; p < numUnsplitPoints[dep]; ++p) { 140418c5995bSMatthew G. Knepley const PetscInt oldp = unsplitPoints[dep][p]; 14052582d50cSToby Isaac const PetscInt newp = DMPlexShiftPoint_Internal(oldp, depth, depthShift) /*oldp + depthOffset[dep]*/; 140618c5995bSMatthew G. Knepley const PetscInt *support; 1407da1dd7e4SMatthew G. Knepley PetscInt coneSize, supportSize, qf, e, s; 140818c5995bSMatthew G. Knepley 14099566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, oldp, &coneSize)); 14109566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dm, oldp, &supportSize)); 14119566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(dm, oldp, &support)); 141218c5995bSMatthew G. Knepley if (dep == 0) { 141318c5995bSMatthew G. Knepley const PetscInt hybedge = p + pMaxNew[dep + 1] + numSplitPoints[dep + 1] + numSplitPoints[dep]; 141418c5995bSMatthew G. Knepley 141539254ff6SMatthew G. Knepley /* Unsplit vertex: Edges into original vertex, split edges, and new cohesive edge twice */ 141639254ff6SMatthew G. Knepley for (s = 0, qf = 0; s < supportSize; ++s, ++qf) { 14179566063dSJacob Faibussowitsch PetscCall(PetscFindInt(support[s], numSplitPoints[dep + 1], splitPoints[dep + 1], &e)); 141839254ff6SMatthew G. Knepley if (e >= 0) ++qf; 141939254ff6SMatthew G. Knepley } 14209566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupportSize(sdm, newp, qf + 2)); 142118c5995bSMatthew G. Knepley /* Add hybrid edge */ 14229566063dSJacob Faibussowitsch PetscCall(DMPlexSetConeSize(sdm, hybedge, 2)); 1423e1757548SMatthew G. Knepley for (e = 0, qf = 0; e < supportSize; ++e) { 1424e1757548SMatthew G. Knepley PetscInt val; 1425e1757548SMatthew G. Knepley 14269566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, support[e], &val)); 1427e1757548SMatthew G. Knepley /* Split and unsplit edges produce hybrid faces */ 1428da1dd7e4SMatthew G. Knepley if (val == 1) ++qf; 1429da1dd7e4SMatthew G. Knepley if (val == (shift2 + 1)) ++qf; 1430e1757548SMatthew G. Knepley } 14319566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupportSize(sdm, hybedge, qf)); 14329566063dSJacob Faibussowitsch PetscCall(DMPlexSetCellType(sdm, hybedge, DM_POLYTOPE_POINT_PRISM_TENSOR)); 143318c5995bSMatthew G. Knepley } else if (dep == dim - 2) { 143418c5995bSMatthew G. Knepley const PetscInt hybface = p + pMaxNew[dep + 1] + numSplitPoints[dep + 1] + numSplitPoints[dep]; 1435cd0c2139SMatthew G Knepley PetscInt val; 1436cd0c2139SMatthew G Knepley 1437da1dd7e4SMatthew G. Knepley for (e = 0, qf = 0; e < supportSize; ++e) { 14389566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, support[e], &val)); 1439da1dd7e4SMatthew G. Knepley if (val == dim - 1) qf += 2; 1440da1dd7e4SMatthew G. Knepley else ++qf; 1441cd0c2139SMatthew G Knepley } 144218c5995bSMatthew G. Knepley /* Unsplit edge: Faces into original edge, split face, and cohesive face twice */ 14439566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupportSize(sdm, newp, qf + 2)); 144418c5995bSMatthew G. Knepley /* Add hybrid face */ 1445da1dd7e4SMatthew G. Knepley for (e = 0, qf = 0; e < supportSize; ++e) { 14469566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, support[e], &val)); 1447da1dd7e4SMatthew G. Knepley if (val == dim - 1) ++qf; 1448da1dd7e4SMatthew G. Knepley } 14499566063dSJacob Faibussowitsch PetscCall(DMPlexSetConeSize(sdm, hybface, 4)); 14509566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupportSize(sdm, hybface, qf)); 14519566063dSJacob Faibussowitsch PetscCall(DMPlexSetCellType(sdm, hybface, DM_POLYTOPE_SEG_PRISM_TENSOR)); 1452cd0c2139SMatthew G Knepley } 1453cd0c2139SMatthew G Knepley } 1454cd0c2139SMatthew G Knepley } 1455cd0c2139SMatthew G Knepley /* Step 4: Setup split DM */ 14569566063dSJacob Faibussowitsch PetscCall(DMSetUp(sdm)); 14579566063dSJacob Faibussowitsch PetscCall(DMPlexShiftPoints_Internal(dm, depthShift, sdm)); 14589566063dSJacob Faibussowitsch PetscCall(DMPlexGetMaxSizes(sdm, &maxConeSizeNew, &maxSupportSizeNew)); 14599566063dSJacob Faibussowitsch PetscCall(PetscMalloc3(PetscMax(maxConeSize, maxConeSizeNew) * 3, &coneNew, PetscMax(maxConeSize, maxConeSizeNew) * 3, &coneONew, PetscMax(maxSupportSize, maxSupportSizeNew), &supportNew)); 1460cd0c2139SMatthew G Knepley /* Step 6: Set cones and supports for new points */ 1461cd0c2139SMatthew G Knepley for (dep = 0; dep <= depth; ++dep) { 1462cd0c2139SMatthew G Knepley for (p = 0; p < numSplitPoints[dep]; ++p) { 1463cd0c2139SMatthew G Knepley const PetscInt oldp = splitPoints[dep][p]; 14642582d50cSToby Isaac const PetscInt newp = DMPlexShiftPoint_Internal(oldp, depth, depthShift) /*oldp + depthOffset[dep]*/; 14654c367dbcSMatthew G. Knepley const PetscInt splitp = p + pMaxNew[dep]; 1466cd0c2139SMatthew G Knepley const PetscInt *cone, *support, *ornt; 1467b5a892a1SMatthew G. Knepley DMPolytopeType ct; 14684c367dbcSMatthew G. Knepley PetscInt coneSize, supportSize, q, qf, qn, qp, v, e, s; 1469cd0c2139SMatthew G Knepley 14709566063dSJacob Faibussowitsch PetscCall(DMPlexGetCellType(dm, oldp, &ct)); 14719566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, oldp, &coneSize)); 14729566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, oldp, &cone)); 14739566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeOrientation(dm, oldp, &ornt)); 14749566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dm, oldp, &supportSize)); 14759566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(dm, oldp, &support)); 1476cd0c2139SMatthew G Knepley if (dep == depth - 1) { 147796a07cd0SMatthew G. Knepley PetscBool hasUnsplit = PETSC_FALSE; 14784c367dbcSMatthew G. Knepley const PetscInt hybcell = p + pMaxNew[dep + 1] + numSplitPoints[dep + 1]; 1479cd0c2139SMatthew G Knepley const PetscInt *supportF; 1480cd0c2139SMatthew G Knepley 1481b6dfa339SMatthew G. Knepley coneONew[0] = coneONew[1] = -1000; 1482cd0c2139SMatthew G Knepley /* Split face: copy in old face to new face to start */ 14839566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(sdm, newp, &supportF)); 14849566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupport(sdm, splitp, supportF)); 1485cd0c2139SMatthew G Knepley /* Split old face: old vertices/edges in cone so no change */ 1486cd0c2139SMatthew G Knepley /* Split new face: new vertices/edges in cone */ 1487cd0c2139SMatthew G Knepley for (q = 0; q < coneSize; ++q) { 14889566063dSJacob Faibussowitsch PetscCall(PetscFindInt(cone[q], numSplitPoints[dep - 1], splitPoints[dep - 1], &v)); 148918c5995bSMatthew G. Knepley if (v < 0) { 14909566063dSJacob Faibussowitsch PetscCall(PetscFindInt(cone[q], numUnsplitPoints[dep - 1], unsplitPoints[dep - 1], &v)); 149163a3b9bcSJacob Faibussowitsch PetscCheck(v >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Could not locate point %" PetscInt_FMT " in split or unsplit points of depth %" PetscInt_FMT, cone[q], dep - 1); 14922582d50cSToby Isaac coneNew[2 + q] = DMPlexShiftPoint_Internal(cone[q], depth, depthShift) /*cone[q] + depthOffset[dep-1]*/; 149396a07cd0SMatthew G. Knepley hasUnsplit = PETSC_TRUE; 149418c5995bSMatthew G. Knepley } else { 14954c367dbcSMatthew G. Knepley coneNew[2 + q] = v + pMaxNew[dep - 1]; 1496163235baSMatthew G. Knepley if (dep > 1) { 1497163235baSMatthew G. Knepley const PetscInt *econe; 1498163235baSMatthew G. Knepley PetscInt econeSize, r, vs, vu; 1499163235baSMatthew G. Knepley 15009566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, cone[q], &econeSize)); 15019566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, cone[q], &econe)); 1502163235baSMatthew G. Knepley for (r = 0; r < econeSize; ++r) { 15039566063dSJacob Faibussowitsch PetscCall(PetscFindInt(econe[r], numSplitPoints[dep - 2], splitPoints[dep - 2], &vs)); 15049566063dSJacob Faibussowitsch PetscCall(PetscFindInt(econe[r], numUnsplitPoints[dep - 2], unsplitPoints[dep - 2], &vu)); 1505163235baSMatthew G. Knepley if (vs >= 0) continue; 150663a3b9bcSJacob Faibussowitsch PetscCheck(vu >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Could not locate point %" PetscInt_FMT " in split or unsplit points of depth %" PetscInt_FMT, econe[r], dep - 2); 1507163235baSMatthew G. Knepley hasUnsplit = PETSC_TRUE; 1508163235baSMatthew G. Knepley } 1509163235baSMatthew G. Knepley } 1510cd0c2139SMatthew G Knepley } 1511cd0c2139SMatthew G Knepley } 15129566063dSJacob Faibussowitsch PetscCall(DMPlexSetCone(sdm, splitp, &coneNew[2])); 15139566063dSJacob Faibussowitsch PetscCall(DMPlexSetConeOrientation(sdm, splitp, ornt)); 1514e537020bSMatthew G. Knepley /* Face support */ 1515b6dfa339SMatthew G. Knepley PetscInt vals[2]; 1516cd0c2139SMatthew G Knepley 1517b6dfa339SMatthew G. Knepley PetscCall(DMLabelGetValue(label, support[0], &vals[0])); 1518b6dfa339SMatthew G. Knepley if (supportSize > 1) PetscCall(DMLabelGetValue(label, support[1], &vals[1])); 1519b6dfa339SMatthew G. Knepley else vals[1] = -vals[0]; 1520b6dfa339SMatthew G. Knepley PetscCheck(vals[0] * vals[1] < 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid support labels %" PetscInt_FMT " %" PetscInt_FMT, vals[0], vals[1]); 1521b6dfa339SMatthew G. Knepley 1522b6dfa339SMatthew G. Knepley for (s = 0; s < 2; ++s) { 1523b6dfa339SMatthew G. Knepley if (s >= supportSize) { 1524b6dfa339SMatthew G. Knepley if (vals[s] < 0) { 1525b6dfa339SMatthew G. Knepley /* Ghost old face: Replace negative side cell with cohesive cell */ 1526accc9626SMatthew G. Knepley PetscCall(DMPlexInsertSupport(sdm, newp, s, hybcell)); 1527b6dfa339SMatthew G. Knepley } else { 1528b6dfa339SMatthew G. Knepley /* Ghost new face: Replace positive side cell with cohesive cell */ 1529accc9626SMatthew G. Knepley PetscCall(DMPlexInsertSupport(sdm, splitp, s, hybcell)); 1530b6dfa339SMatthew G. Knepley } 1531b6dfa339SMatthew G. Knepley } else { 1532b6dfa339SMatthew G. Knepley if (vals[s] < 0) { 1533cd0c2139SMatthew G Knepley /* Split old face: Replace negative side cell with cohesive cell */ 15349566063dSJacob Faibussowitsch PetscCall(DMPlexInsertSupport(sdm, newp, s, hybcell)); 1535cd0c2139SMatthew G Knepley } else { 1536cd0c2139SMatthew G Knepley /* Split new face: Replace positive side cell with cohesive cell */ 15379566063dSJacob Faibussowitsch PetscCall(DMPlexInsertSupport(sdm, splitp, s, hybcell)); 1538b6dfa339SMatthew G. Knepley } 1539b6dfa339SMatthew G. Knepley } 1540b6dfa339SMatthew G. Knepley } 1541b6dfa339SMatthew G. Knepley /* Get orientation for cohesive face using the positive side cell */ 1542e537020bSMatthew G. Knepley { 1543e537020bSMatthew G. Knepley const PetscInt *ncone, *nconeO; 1544b6dfa339SMatthew G. Knepley PetscInt nconeSize, nc, ocell; 1545accc9626SMatthew G. Knepley PetscBool flip = PETSC_FALSE; 1546e537020bSMatthew G. Knepley 15479371c9d4SSatish Balay if (supportSize > 1) { 15489371c9d4SSatish Balay ocell = vals[0] < 0 ? support[1] : support[0]; 15499371c9d4SSatish Balay } else { 15509371c9d4SSatish Balay ocell = support[0]; 15519371c9d4SSatish Balay flip = vals[0] < 0 ? PETSC_TRUE : PETSC_FALSE; 15529371c9d4SSatish Balay } 1553b6dfa339SMatthew G. Knepley PetscCall(DMPlexGetConeSize(dm, ocell, &nconeSize)); 1554b6dfa339SMatthew G. Knepley PetscCall(DMPlexGetCone(dm, ocell, &ncone)); 1555e1a13daeSMatthew G. Knepley PetscCall(DMPlexGetConeOrientation(dm, ocell, &nconeO)); 1556e537020bSMatthew G. Knepley for (nc = 0; nc < nconeSize; ++nc) { 1557e537020bSMatthew G. Knepley if (ncone[nc] == oldp) { 1558b6dfa339SMatthew G. Knepley coneONew[0] = flip ? -(nconeO[nc] + 1) : nconeO[nc]; 1559e537020bSMatthew G. Knepley break; 1560cd0c2139SMatthew G Knepley } 1561cd0c2139SMatthew G Knepley } 1562b6dfa339SMatthew G. Knepley PetscCheck(nc < nconeSize, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Could not locate face %" PetscInt_FMT " in neighboring cell %" PetscInt_FMT, oldp, ocell); 1563e537020bSMatthew G. Knepley } 15644c367dbcSMatthew G. Knepley /* Cohesive cell: Old and new split face, then new cohesive faces */ 1565b6dfa339SMatthew G. Knepley { 1566b6dfa339SMatthew G. Knepley const PetscInt No = DMPolytopeTypeGetNumArrangments(ct) / 2; 1567b6dfa339SMatthew G. Knepley PetscCheck((coneONew[0] >= -No) && (coneONew[0] < No), PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid %s orientation %" PetscInt_FMT, DMPolytopeTypes[ct], coneONew[0]); 1568b6dfa339SMatthew G. Knepley } 1569b5a892a1SMatthew G. Knepley const PetscInt *arr = DMPolytopeTypeGetArrangment(ct, coneONew[0]); 1570b5a892a1SMatthew G. Knepley 1571fd4b9f15SMatthew G. Knepley coneNew[0] = newp; /* Extracted negative side orientation above */ 15724c367dbcSMatthew G. Knepley coneNew[1] = splitp; 15734c367dbcSMatthew G. Knepley coneONew[1] = coneONew[0]; 1574e537020bSMatthew G. Knepley for (q = 0; q < coneSize; ++q) { 1575412e9a14SMatthew G. Knepley /* Hybrid faces must follow order from oriented end face */ 1576b5a892a1SMatthew G. Knepley const PetscInt qa = arr[q * 2 + 0]; 1577b5a892a1SMatthew G. Knepley const PetscInt qo = arr[q * 2 + 1]; 1578b5a892a1SMatthew G. Knepley DMPolytopeType ft = dep == 2 ? DM_POLYTOPE_SEGMENT : DM_POLYTOPE_POINT; 1579412e9a14SMatthew G. Knepley 15809566063dSJacob Faibussowitsch PetscCall(PetscFindInt(cone[qa], numSplitPoints[dep - 1], splitPoints[dep - 1], &v)); 158118c5995bSMatthew G. Knepley if (v < 0) { 15829566063dSJacob Faibussowitsch PetscCall(PetscFindInt(cone[qa], numUnsplitPoints[dep - 1], unsplitPoints[dep - 1], &v)); 158318c5995bSMatthew G. Knepley coneNew[2 + q] = v + pMaxNew[dep] + numSplitPoints[dep] + numSplitPoints[dep - 1]; 158418c5995bSMatthew G. Knepley } else { 158518c5995bSMatthew G. Knepley coneNew[2 + q] = v + pMaxNew[dep] + numSplitPoints[dep]; 158618c5995bSMatthew G. Knepley } 1587b5a892a1SMatthew G. Knepley coneONew[2 + q] = DMPolytopeTypeComposeOrientation(ft, qo, ornt[qa]); 1588e537020bSMatthew G. Knepley } 15899566063dSJacob Faibussowitsch PetscCall(DMPlexSetCone(sdm, hybcell, coneNew)); 15909566063dSJacob Faibussowitsch PetscCall(DMPlexSetConeOrientation(sdm, hybcell, coneONew)); 159196a07cd0SMatthew G. Knepley /* Label the hybrid cells on the boundary of the split */ 15929566063dSJacob Faibussowitsch if (hasUnsplit) PetscCall(DMLabelSetValue(label, -hybcell, dim)); 1593cd0c2139SMatthew G Knepley } else if (dep == 0) { 15944c367dbcSMatthew G. Knepley const PetscInt hybedge = p + pMaxNew[dep + 1] + numSplitPoints[dep + 1]; 1595cd0c2139SMatthew G Knepley 1596cd0c2139SMatthew G Knepley /* Split old vertex: Edges in old split faces and new cohesive edge */ 15974c367dbcSMatthew G. Knepley for (e = 0, qn = 0; e < supportSize; ++e) { 1598cd0c2139SMatthew G Knepley PetscInt val; 1599cd0c2139SMatthew G Knepley 16009566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, support[e], &val)); 1601ad540459SPierre Jolivet if ((val == 1) || (val == (shift + 1))) supportNew[qn++] = DMPlexShiftPoint_Internal(support[e], depth, depthShift) /*support[e] + depthOffset[dep+1]*/; 1602cd0c2139SMatthew G Knepley } 16034c367dbcSMatthew G. Knepley supportNew[qn] = hybedge; 16049566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupport(sdm, newp, supportNew)); 1605cd0c2139SMatthew G Knepley /* Split new vertex: Edges in new split faces and new cohesive edge */ 16064c367dbcSMatthew G. Knepley for (e = 0, qp = 0; e < supportSize; ++e) { 1607cd0c2139SMatthew G Knepley PetscInt val, edge; 1608cd0c2139SMatthew G Knepley 16099566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, support[e], &val)); 1610cd0c2139SMatthew G Knepley if (val == 1) { 16119566063dSJacob Faibussowitsch PetscCall(PetscFindInt(support[e], numSplitPoints[dep + 1], splitPoints[dep + 1], &edge)); 161263a3b9bcSJacob Faibussowitsch PetscCheck(edge >= 0, comm, PETSC_ERR_ARG_WRONG, "Edge %" PetscInt_FMT " is not a split edge", support[e]); 16134c367dbcSMatthew G. Knepley supportNew[qp++] = edge + pMaxNew[dep + 1]; 1614cd0c2139SMatthew G Knepley } else if (val == -(shift + 1)) { 16152582d50cSToby Isaac supportNew[qp++] = DMPlexShiftPoint_Internal(support[e], depth, depthShift) /*support[e] + depthOffset[dep+1]*/; 1616cd0c2139SMatthew G Knepley } 1617cd0c2139SMatthew G Knepley } 16184c367dbcSMatthew G. Knepley supportNew[qp] = hybedge; 16199566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupport(sdm, splitp, supportNew)); 16204c367dbcSMatthew G. Knepley /* Hybrid edge: Old and new split vertex */ 1621cd0c2139SMatthew G Knepley coneNew[0] = newp; 1622cd0c2139SMatthew G Knepley coneNew[1] = splitp; 16239566063dSJacob Faibussowitsch PetscCall(DMPlexSetCone(sdm, hybedge, coneNew)); 16244c367dbcSMatthew G. Knepley for (e = 0, qf = 0; e < supportSize; ++e) { 16254c367dbcSMatthew G. Knepley PetscInt val, edge; 16264c367dbcSMatthew G. Knepley 16279566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, support[e], &val)); 16284c367dbcSMatthew G. Knepley if (val == 1) { 16299566063dSJacob Faibussowitsch PetscCall(PetscFindInt(support[e], numSplitPoints[dep + 1], splitPoints[dep + 1], &edge)); 163063a3b9bcSJacob Faibussowitsch PetscCheck(edge >= 0, comm, PETSC_ERR_ARG_WRONG, "Edge %" PetscInt_FMT " is not a split edge", support[e]); 16314c367dbcSMatthew G. Knepley supportNew[qf++] = edge + pMaxNew[dep + 2] + numSplitPoints[dep + 2]; 16324c367dbcSMatthew G. Knepley } 16334c367dbcSMatthew G. Knepley } 16349566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupport(sdm, hybedge, supportNew)); 1635cd0c2139SMatthew G Knepley } else if (dep == dim - 2) { 16364c367dbcSMatthew G. Knepley const PetscInt hybface = p + pMaxNew[dep + 1] + numSplitPoints[dep + 1]; 16374c367dbcSMatthew G. Knepley 1638cd0c2139SMatthew G Knepley /* Split old edge: old vertices in cone so no change */ 1639cd0c2139SMatthew G Knepley /* Split new edge: new vertices in cone */ 1640cd0c2139SMatthew G Knepley for (q = 0; q < coneSize; ++q) { 16419566063dSJacob Faibussowitsch PetscCall(PetscFindInt(cone[q], numSplitPoints[dep - 1], splitPoints[dep - 1], &v)); 1642e1757548SMatthew G. Knepley if (v < 0) { 16439566063dSJacob Faibussowitsch PetscCall(PetscFindInt(cone[q], numUnsplitPoints[dep - 1], unsplitPoints[dep - 1], &v)); 164463a3b9bcSJacob Faibussowitsch PetscCheck(v >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Could not locate point %" PetscInt_FMT " in split or unsplit points of depth %" PetscInt_FMT, cone[q], dep - 1); 16452582d50cSToby Isaac coneNew[q] = DMPlexShiftPoint_Internal(cone[q], depth, depthShift) /*cone[q] + depthOffset[dep-1]*/; 1646e1757548SMatthew G. Knepley } else { 16474c367dbcSMatthew G. Knepley coneNew[q] = v + pMaxNew[dep - 1]; 1648cd0c2139SMatthew G Knepley } 1649e1757548SMatthew G. Knepley } 16509566063dSJacob Faibussowitsch PetscCall(DMPlexSetCone(sdm, splitp, coneNew)); 1651cd0c2139SMatthew G Knepley /* Split old edge: Faces in positive side cells and old split faces */ 1652cd0c2139SMatthew G Knepley for (e = 0, q = 0; e < supportSize; ++e) { 1653cd0c2139SMatthew G Knepley PetscInt val; 1654cd0c2139SMatthew G Knepley 16559566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, support[e], &val)); 16564c367dbcSMatthew G. Knepley if (val == dim - 1) { 16572582d50cSToby Isaac supportNew[q++] = DMPlexShiftPoint_Internal(support[e], depth, depthShift) /*support[e] + depthOffset[dep+1]*/; 16584c367dbcSMatthew G. Knepley } else if (val == (shift + dim - 1)) { 16592582d50cSToby Isaac supportNew[q++] = DMPlexShiftPoint_Internal(support[e], depth, depthShift) /*support[e] + depthOffset[dep+1]*/; 1660cd0c2139SMatthew G Knepley } 1661cd0c2139SMatthew G Knepley } 1662b279cd2aSMatthew G. Knepley supportNew[q++] = p + pMaxNew[dep + 1] + numSplitPoints[dep + 1]; 16639566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupport(sdm, newp, supportNew)); 1664cd0c2139SMatthew G Knepley /* Split new edge: Faces in negative side cells and new split faces */ 1665cd0c2139SMatthew G Knepley for (e = 0, q = 0; e < supportSize; ++e) { 1666cd0c2139SMatthew G Knepley PetscInt val, face; 1667cd0c2139SMatthew G Knepley 16689566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, support[e], &val)); 1669cd0c2139SMatthew G Knepley if (val == dim - 1) { 16709566063dSJacob Faibussowitsch PetscCall(PetscFindInt(support[e], numSplitPoints[dep + 1], splitPoints[dep + 1], &face)); 167163a3b9bcSJacob Faibussowitsch PetscCheck(face >= 0, comm, PETSC_ERR_ARG_WRONG, "Face %" PetscInt_FMT " is not a split face", support[e]); 16724c367dbcSMatthew G. Knepley supportNew[q++] = face + pMaxNew[dep + 1]; 1673cd0c2139SMatthew G Knepley } else if (val == -(shift + dim - 1)) { 16742582d50cSToby Isaac supportNew[q++] = DMPlexShiftPoint_Internal(support[e], depth, depthShift) /*support[e] + depthOffset[dep+1]*/; 1675cd0c2139SMatthew G Knepley } 1676cd0c2139SMatthew G Knepley } 1677b279cd2aSMatthew G. Knepley supportNew[q++] = p + pMaxNew[dep + 1] + numSplitPoints[dep + 1]; 16789566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupport(sdm, splitp, supportNew)); 16794c367dbcSMatthew G. Knepley /* Hybrid face */ 16804c367dbcSMatthew G. Knepley coneNew[0] = newp; 16814c367dbcSMatthew G. Knepley coneNew[1] = splitp; 16824c367dbcSMatthew G. Knepley for (v = 0; v < coneSize; ++v) { 16834c367dbcSMatthew G. Knepley PetscInt vertex; 16849566063dSJacob Faibussowitsch PetscCall(PetscFindInt(cone[v], numSplitPoints[dep - 1], splitPoints[dep - 1], &vertex)); 1685e1757548SMatthew G. Knepley if (vertex < 0) { 16869566063dSJacob Faibussowitsch PetscCall(PetscFindInt(cone[v], numUnsplitPoints[dep - 1], unsplitPoints[dep - 1], &vertex)); 168763a3b9bcSJacob Faibussowitsch PetscCheck(vertex >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Could not locate point %" PetscInt_FMT " in split or unsplit points of depth %" PetscInt_FMT, cone[v], dep - 1); 1688e1757548SMatthew G. Knepley coneNew[2 + v] = vertex + pMaxNew[dep] + numSplitPoints[dep] + numSplitPoints[dep - 1]; 1689e1757548SMatthew G. Knepley } else { 16904c367dbcSMatthew G. Knepley coneNew[2 + v] = vertex + pMaxNew[dep] + numSplitPoints[dep]; 16914c367dbcSMatthew G. Knepley } 1692e1757548SMatthew G. Knepley } 16939566063dSJacob Faibussowitsch PetscCall(DMPlexSetCone(sdm, hybface, coneNew)); 16944c367dbcSMatthew G. Knepley for (e = 0, qf = 0; e < supportSize; ++e) { 16954c367dbcSMatthew G. Knepley PetscInt val, face; 16964c367dbcSMatthew G. Knepley 16979566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, support[e], &val)); 16984c367dbcSMatthew G. Knepley if (val == dim - 1) { 16999566063dSJacob Faibussowitsch PetscCall(PetscFindInt(support[e], numSplitPoints[dep + 1], splitPoints[dep + 1], &face)); 170063a3b9bcSJacob Faibussowitsch PetscCheck(face >= 0, comm, PETSC_ERR_ARG_WRONG, "Face %" PetscInt_FMT " is not a split face", support[e]); 17014c367dbcSMatthew G. Knepley supportNew[qf++] = face + pMaxNew[dep + 2] + numSplitPoints[dep + 2]; 17024c367dbcSMatthew G. Knepley } 17034c367dbcSMatthew G. Knepley } 17049566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupport(sdm, hybface, supportNew)); 1705cd0c2139SMatthew G Knepley } 1706cd0c2139SMatthew G Knepley } 1707cd0c2139SMatthew G Knepley } 170818c5995bSMatthew G. Knepley for (dep = 0; dep <= depth; ++dep) { 170918c5995bSMatthew G. Knepley for (p = 0; p < numUnsplitPoints[dep]; ++p) { 171018c5995bSMatthew G. Knepley const PetscInt oldp = unsplitPoints[dep][p]; 17112582d50cSToby Isaac const PetscInt newp = DMPlexShiftPoint_Internal(oldp, depth, depthShift) /*oldp + depthOffset[dep]*/; 1712b5a892a1SMatthew G. Knepley const PetscInt *cone, *support; 1713e1757548SMatthew G. Knepley PetscInt coneSize, supportSize, supportSizeNew, q, qf, e, f, s; 171418c5995bSMatthew G. Knepley 17159566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, oldp, &coneSize)); 17169566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, oldp, &cone)); 17179566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dm, oldp, &supportSize)); 17189566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(dm, oldp, &support)); 171918c5995bSMatthew G. Knepley if (dep == 0) { 172018c5995bSMatthew G. Knepley const PetscInt hybedge = p + pMaxNew[dep + 1] + numSplitPoints[dep + 1] + numSplitPoints[dep]; 172118c5995bSMatthew G. Knepley 172218c5995bSMatthew G. Knepley /* Unsplit vertex */ 17239566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(sdm, newp, &supportSizeNew)); 172418c5995bSMatthew G. Knepley for (s = 0, q = 0; s < supportSize; ++s) { 17252582d50cSToby Isaac supportNew[q++] = DMPlexShiftPoint_Internal(support[s], depth, depthShift) /*support[s] + depthOffset[dep+1]*/; 17269566063dSJacob Faibussowitsch PetscCall(PetscFindInt(support[s], numSplitPoints[dep + 1], splitPoints[dep + 1], &e)); 1727ad540459SPierre Jolivet if (e >= 0) supportNew[q++] = e + pMaxNew[dep + 1]; 172818c5995bSMatthew G. Knepley } 172918c5995bSMatthew G. Knepley supportNew[q++] = hybedge; 173018c5995bSMatthew G. Knepley supportNew[q++] = hybedge; 173163a3b9bcSJacob Faibussowitsch PetscCheck(q == supportSizeNew, comm, PETSC_ERR_ARG_WRONG, "Support size %" PetscInt_FMT " != %" PetscInt_FMT " for vertex %" PetscInt_FMT, q, supportSizeNew, newp); 17329566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupport(sdm, newp, supportNew)); 173318c5995bSMatthew G. Knepley /* Hybrid edge */ 173418c5995bSMatthew G. Knepley coneNew[0] = newp; 173518c5995bSMatthew G. Knepley coneNew[1] = newp; 17369566063dSJacob Faibussowitsch PetscCall(DMPlexSetCone(sdm, hybedge, coneNew)); 173718c5995bSMatthew G. Knepley for (e = 0, qf = 0; e < supportSize; ++e) { 173818c5995bSMatthew G. Knepley PetscInt val, edge; 173918c5995bSMatthew G. Knepley 17409566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, support[e], &val)); 174118c5995bSMatthew G. Knepley if (val == 1) { 17429566063dSJacob Faibussowitsch PetscCall(PetscFindInt(support[e], numSplitPoints[dep + 1], splitPoints[dep + 1], &edge)); 174363a3b9bcSJacob Faibussowitsch PetscCheck(edge >= 0, comm, PETSC_ERR_ARG_WRONG, "Edge %" PetscInt_FMT " is not a split edge", support[e]); 174418c5995bSMatthew G. Knepley supportNew[qf++] = edge + pMaxNew[dep + 2] + numSplitPoints[dep + 2]; 1745e1757548SMatthew G. Knepley } else if (val == (shift2 + 1)) { 17469566063dSJacob Faibussowitsch PetscCall(PetscFindInt(support[e], numUnsplitPoints[dep + 1], unsplitPoints[dep + 1], &edge)); 174763a3b9bcSJacob Faibussowitsch PetscCheck(edge >= 0, comm, PETSC_ERR_ARG_WRONG, "Edge %" PetscInt_FMT " is not a unsplit edge", support[e]); 1748e1757548SMatthew G. Knepley supportNew[qf++] = edge + pMaxNew[dep + 2] + numSplitPoints[dep + 2] + numSplitPoints[dep + 1]; 174918c5995bSMatthew G. Knepley } 175018c5995bSMatthew G. Knepley } 17519566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupport(sdm, hybedge, supportNew)); 1752e1757548SMatthew G. Knepley } else if (dep == dim - 2) { 1753e1757548SMatthew G. Knepley const PetscInt hybface = p + pMaxNew[dep + 1] + numSplitPoints[dep + 1] + numSplitPoints[dep]; 1754e1757548SMatthew G. Knepley 1755da1dd7e4SMatthew G. Knepley /* Unsplit edge: Faces into original edge, split face, and hybrid face twice */ 1756e1757548SMatthew G. Knepley for (f = 0, qf = 0; f < supportSize; ++f) { 1757e1757548SMatthew G. Knepley PetscInt val, face; 1758e1757548SMatthew G. Knepley 17599566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, support[f], &val)); 1760e1757548SMatthew G. Knepley if (val == dim - 1) { 17619566063dSJacob Faibussowitsch PetscCall(PetscFindInt(support[f], numSplitPoints[dep + 1], splitPoints[dep + 1], &face)); 176263a3b9bcSJacob Faibussowitsch PetscCheck(face >= 0, comm, PETSC_ERR_ARG_WRONG, "Face %" PetscInt_FMT " is not a split face", support[f]); 17632582d50cSToby Isaac supportNew[qf++] = DMPlexShiftPoint_Internal(support[f], depth, depthShift) /*support[f] + depthOffset[dep+1]*/; 1764e1757548SMatthew G. Knepley supportNew[qf++] = face + pMaxNew[dep + 1]; 1765e1757548SMatthew G. Knepley } else { 17662582d50cSToby Isaac supportNew[qf++] = DMPlexShiftPoint_Internal(support[f], depth, depthShift) /*support[f] + depthOffset[dep+1]*/; 1767e1757548SMatthew G. Knepley } 1768e1757548SMatthew G. Knepley } 1769e1757548SMatthew G. Knepley supportNew[qf++] = hybface; 1770e1757548SMatthew G. Knepley supportNew[qf++] = hybface; 17719566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(sdm, newp, &supportSizeNew)); 177263a3b9bcSJacob Faibussowitsch PetscCheck(qf == supportSizeNew, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Support size for unsplit edge %" PetscInt_FMT " is %" PetscInt_FMT " != %" PetscInt_FMT, newp, qf, supportSizeNew); 17739566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupport(sdm, newp, supportNew)); 1774e1757548SMatthew G. Knepley /* Add hybrid face */ 1775e1757548SMatthew G. Knepley coneNew[0] = newp; 1776212cc919SMatthew G. Knepley coneNew[1] = newp; 17779566063dSJacob Faibussowitsch PetscCall(PetscFindInt(cone[0], numUnsplitPoints[dep - 1], unsplitPoints[dep - 1], &v)); 177863a3b9bcSJacob Faibussowitsch PetscCheck(v >= 0, comm, PETSC_ERR_ARG_WRONG, "Vertex %" PetscInt_FMT " is not an unsplit vertex", cone[0]); 1779212cc919SMatthew G. Knepley coneNew[2] = v + pMaxNew[dep] + numSplitPoints[dep] + numSplitPoints[dep - 1]; 17809566063dSJacob Faibussowitsch PetscCall(PetscFindInt(cone[1], numUnsplitPoints[dep - 1], unsplitPoints[dep - 1], &v)); 178163a3b9bcSJacob Faibussowitsch PetscCheck(v >= 0, comm, PETSC_ERR_ARG_WRONG, "Vertex %" PetscInt_FMT " is not an unsplit vertex", cone[1]); 1782e1757548SMatthew G. Knepley coneNew[3] = v + pMaxNew[dep] + numSplitPoints[dep] + numSplitPoints[dep - 1]; 17839566063dSJacob Faibussowitsch PetscCall(DMPlexSetCone(sdm, hybface, coneNew)); 1784da1dd7e4SMatthew G. Knepley for (f = 0, qf = 0; f < supportSize; ++f) { 1785da1dd7e4SMatthew G. Knepley PetscInt val, face; 1786da1dd7e4SMatthew G. Knepley 17879566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, support[f], &val)); 1788da1dd7e4SMatthew G. Knepley if (val == dim - 1) { 17899566063dSJacob Faibussowitsch PetscCall(PetscFindInt(support[f], numSplitPoints[dep + 1], splitPoints[dep + 1], &face)); 1790da1dd7e4SMatthew G. Knepley supportNew[qf++] = face + pMaxNew[dep + 2] + numSplitPoints[dep + 2]; 1791da1dd7e4SMatthew G. Knepley } 1792da1dd7e4SMatthew G. Knepley } 17939566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(sdm, hybface, &supportSizeNew)); 179463a3b9bcSJacob Faibussowitsch PetscCheck(qf == supportSizeNew, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Support size for hybrid face %" PetscInt_FMT " is %" PetscInt_FMT " != %" PetscInt_FMT, hybface, qf, supportSizeNew); 17959566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupport(sdm, hybface, supportNew)); 1796cd0c2139SMatthew G Knepley } 1797cd0c2139SMatthew G Knepley } 1798cd0c2139SMatthew G Knepley } 1799cd0c2139SMatthew G Knepley /* Step 6b: Replace split points in negative side cones */ 1800cd0c2139SMatthew G Knepley for (sp = 0; sp < numSP; ++sp) { 1801cd0c2139SMatthew G Knepley PetscInt dep = values[sp]; 1802cd0c2139SMatthew G Knepley IS pIS; 1803cd0c2139SMatthew G Knepley PetscInt numPoints; 1804cd0c2139SMatthew G Knepley const PetscInt *points; 1805cd0c2139SMatthew G Knepley 1806cd0c2139SMatthew G Knepley if (dep >= 0) continue; 18079566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(label, dep, &pIS)); 1808cd0c2139SMatthew G Knepley if (!pIS) continue; 1809cd0c2139SMatthew G Knepley dep = -dep - shift; 18109566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(pIS, &numPoints)); 18119566063dSJacob Faibussowitsch PetscCall(ISGetIndices(pIS, &points)); 1812cd0c2139SMatthew G Knepley for (p = 0; p < numPoints; ++p) { 1813cd0c2139SMatthew G Knepley const PetscInt oldp = points[p]; 18142582d50cSToby Isaac const PetscInt newp = DMPlexShiftPoint_Internal(oldp, depth, depthShift) /*depthOffset[dep] + oldp*/; 1815cd0c2139SMatthew G Knepley const PetscInt *cone; 1816cd0c2139SMatthew G Knepley PetscInt coneSize, c; 181750cf782dSMatthew G. Knepley /* PetscBool replaced = PETSC_FALSE; */ 1818cd0c2139SMatthew G Knepley 1819cd0c2139SMatthew G Knepley /* Negative edge: replace split vertex */ 1820cd0c2139SMatthew G Knepley /* Negative cell: replace split face */ 18219566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(sdm, newp, &coneSize)); 18229566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(sdm, newp, &cone)); 1823cd0c2139SMatthew G Knepley for (c = 0; c < coneSize; ++c) { 1824e38fbfedSToby Isaac const PetscInt coldp = DMPlexShiftPointInverse_Internal(cone[c], depth, depthShift); 1825cd0c2139SMatthew G Knepley PetscInt csplitp, cp, val; 1826cd0c2139SMatthew G Knepley 18279566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, coldp, &val)); 1828cd0c2139SMatthew G Knepley if (val == dep - 1) { 18299566063dSJacob Faibussowitsch PetscCall(PetscFindInt(coldp, numSplitPoints[dep - 1], splitPoints[dep - 1], &cp)); 183063a3b9bcSJacob Faibussowitsch PetscCheck(cp >= 0, comm, PETSC_ERR_ARG_WRONG, "Point %" PetscInt_FMT " is not a split point of dimension %" PetscInt_FMT, oldp, dep - 1); 1831cd0c2139SMatthew G Knepley csplitp = pMaxNew[dep - 1] + cp; 18329566063dSJacob Faibussowitsch PetscCall(DMPlexInsertCone(sdm, newp, c, csplitp)); 183350cf782dSMatthew G. Knepley /* replaced = PETSC_TRUE; */ 1834cd0c2139SMatthew G Knepley } 1835cd0c2139SMatthew G Knepley } 18364a189a86SMatthew G. Knepley /* Cells with only a vertex or edge on the submesh have no replacement */ 183728b400f6SJacob Faibussowitsch /* PetscCheck(replaced,comm, PETSC_ERR_ARG_WRONG, "The cone of point %d does not contain split points", oldp); */ 1838cd0c2139SMatthew G Knepley } 18399566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(pIS, &points)); 18409566063dSJacob Faibussowitsch PetscCall(ISDestroy(&pIS)); 1841cd0c2139SMatthew G Knepley } 18420e18dc48SMatthew G. Knepley PetscCall(DMPlexReorderCohesiveSupports(sdm)); 1843fa8e8ae5SToby Isaac /* Step 7: Coordinates */ 18449566063dSJacob Faibussowitsch PetscCall(DMPlexShiftCoordinates_Internal(dm, depthShift, sdm)); 18459566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateSection(sdm, &coordSection)); 18469566063dSJacob Faibussowitsch PetscCall(DMGetCoordinatesLocal(sdm, &coordinates)); 18479566063dSJacob Faibussowitsch PetscCall(VecGetArray(coordinates, &coords)); 1848cd0c2139SMatthew G Knepley for (v = 0; v < (numSplitPoints ? numSplitPoints[0] : 0); ++v) { 18492582d50cSToby Isaac const PetscInt newp = DMPlexShiftPoint_Internal(splitPoints[0][v], depth, depthShift) /*depthOffset[0] + splitPoints[0][v]*/; 1850cd0c2139SMatthew G Knepley const PetscInt splitp = pMaxNew[0] + v; 1851cd0c2139SMatthew G Knepley PetscInt dof, off, soff, d; 1852cd0c2139SMatthew G Knepley 18539566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(coordSection, newp, &dof)); 18549566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(coordSection, newp, &off)); 18559566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(coordSection, splitp, &soff)); 1856cd0c2139SMatthew G Knepley for (d = 0; d < dof; ++d) coords[soff + d] = coords[off + d]; 1857cd0c2139SMatthew G Knepley } 18589566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(coordinates, &coords)); 1859fa8e8ae5SToby Isaac /* Step 8: SF, if I can figure this out we can split the mesh in parallel */ 18609566063dSJacob Faibussowitsch PetscCall(DMPlexShiftSF_Internal(dm, depthShift, sdm)); 1861b6dfa339SMatthew G. Knepley /* TODO We need to associate the ghost points with the correct replica */ 1862fa8e8ae5SToby Isaac /* Step 9: Labels */ 18639566063dSJacob Faibussowitsch PetscCall(DMPlexShiftLabels_Internal(dm, depthShift, sdm)); 18649566063dSJacob Faibussowitsch PetscCall(DMPlexCreateVTKLabel_Internal(dm, PETSC_FALSE, sdm)); 18659566063dSJacob Faibussowitsch PetscCall(DMGetNumLabels(sdm, &numLabels)); 1866cd0c2139SMatthew G Knepley for (dep = 0; dep <= depth; ++dep) { 1867cd0c2139SMatthew G Knepley for (p = 0; p < numSplitPoints[dep]; ++p) { 18682582d50cSToby Isaac const PetscInt newp = DMPlexShiftPoint_Internal(splitPoints[dep][p], depth, depthShift) /*depthOffset[dep] + splitPoints[dep][p]*/; 1869cd0c2139SMatthew G Knepley const PetscInt splitp = pMaxNew[dep] + p; 1870cd0c2139SMatthew G Knepley PetscInt l; 1871cd0c2139SMatthew G Knepley 18727db7e0a7SMatthew G. Knepley if (splitLabel) { 18737db7e0a7SMatthew G. Knepley const PetscInt val = 100 + dep; 18747db7e0a7SMatthew G. Knepley 18759566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(splitLabel, newp, val)); 18769566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(splitLabel, splitp, -val)); 18777db7e0a7SMatthew G. Knepley } 1878cd0c2139SMatthew G Knepley for (l = 0; l < numLabels; ++l) { 1879cd0c2139SMatthew G Knepley DMLabel mlabel; 1880cd0c2139SMatthew G Knepley const char *lname; 1881cd0c2139SMatthew G Knepley PetscInt val; 18829a356370SMatthew G. Knepley PetscBool isDepth; 1883cd0c2139SMatthew G Knepley 18849566063dSJacob Faibussowitsch PetscCall(DMGetLabelName(sdm, l, &lname)); 18859566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(lname, "depth", &isDepth)); 18869a356370SMatthew G. Knepley if (isDepth) continue; 18879566063dSJacob Faibussowitsch PetscCall(DMGetLabel(sdm, lname, &mlabel)); 18889566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(mlabel, newp, &val)); 188948a46eb9SPierre Jolivet if (val >= 0) PetscCall(DMLabelSetValue(mlabel, splitp, val)); 1890cd0c2139SMatthew G Knepley } 1891cd0c2139SMatthew G Knepley } 1892cd0c2139SMatthew G Knepley } 1893cd0c2139SMatthew G Knepley for (sp = 0; sp < numSP; ++sp) { 1894cd0c2139SMatthew G Knepley const PetscInt dep = values[sp]; 1895cd0c2139SMatthew G Knepley 1896cd0c2139SMatthew G Knepley if ((dep < 0) || (dep > depth)) continue; 18979566063dSJacob Faibussowitsch if (splitIS[dep]) PetscCall(ISRestoreIndices(splitIS[dep], &splitPoints[dep])); 18989566063dSJacob Faibussowitsch PetscCall(ISDestroy(&splitIS[dep])); 18999566063dSJacob Faibussowitsch if (unsplitIS[dep]) PetscCall(ISRestoreIndices(unsplitIS[dep], &unsplitPoints[dep])); 19009566063dSJacob Faibussowitsch PetscCall(ISDestroy(&unsplitIS[dep])); 1901cd0c2139SMatthew G Knepley } 1902b6dfa339SMatthew G. Knepley if (ghostIS) PetscCall(ISRestoreIndices(ghostIS, &ghostPoints)); 1903b6dfa339SMatthew G. Knepley PetscCall(ISDestroy(&ghostIS)); 1904cd0c2139SMatthew G Knepley if (label) { 19059566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(valueIS, &values)); 19069566063dSJacob Faibussowitsch PetscCall(ISDestroy(&valueIS)); 1907cd0c2139SMatthew G Knepley } 19080d4d4d06SMatthew G. Knepley for (d = 0; d <= depth; ++d) { 19099566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthStratum(sdm, d, NULL, &pEnd)); 191036dbac82SMatthew G. Knepley pMaxNew[d] = pEnd - numHybridPoints[d] - numHybridPointsOld[d]; 19110d4d4d06SMatthew G. Knepley } 19129566063dSJacob Faibussowitsch PetscCall(PetscFree3(coneNew, coneONew, supportNew)); 19139566063dSJacob Faibussowitsch PetscCall(PetscFree5(depthMax, depthEnd, depthShift, pMaxNew, numHybridPointsOld)); 19149566063dSJacob Faibussowitsch PetscCall(PetscFree7(splitIS, unsplitIS, numSplitPoints, numUnsplitPoints, numHybridPoints, splitPoints, unsplitPoints)); 19153ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1916cd0c2139SMatthew G Knepley } 1917cd0c2139SMatthew G Knepley 1918cd0c2139SMatthew G Knepley /*@C 1919cd0c2139SMatthew G Knepley DMPlexConstructCohesiveCells - Construct cohesive cells which split the face along an internal interface 1920cd0c2139SMatthew G Knepley 192120f4b53cSBarry Smith Collective 1922cd0c2139SMatthew G Knepley 1923cd0c2139SMatthew G Knepley Input Parameters: 192420f4b53cSBarry Smith + dm - The original `DM` 192520f4b53cSBarry Smith - label - The `DMLabel` specifying the boundary faces (this could be auto-generated) 1926cd0c2139SMatthew G Knepley 1927cd0c2139SMatthew G Knepley Output Parameters: 192820f4b53cSBarry Smith + splitLabel - The `DMLabel` containing the split points, or `NULL` if no output is desired 192920f4b53cSBarry Smith - dmSplit - The new `DM` 1930cd0c2139SMatthew G Knepley 1931cd0c2139SMatthew G Knepley Level: developer 1932cd0c2139SMatthew G Knepley 19331cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMCreate()`, `DMPlexLabelCohesiveComplete()` 1934cd0c2139SMatthew G Knepley @*/ 1935d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexConstructCohesiveCells(DM dm, DMLabel label, DMLabel splitLabel, DM *dmSplit) 1936d71ae5a4SJacob Faibussowitsch { 1937cd0c2139SMatthew G Knepley DM sdm; 1938cd0c2139SMatthew G Knepley PetscInt dim; 1939cd0c2139SMatthew G Knepley 1940cd0c2139SMatthew G Knepley PetscFunctionBegin; 1941cd0c2139SMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 19424f572ea9SToby Isaac PetscAssertPointer(dmSplit, 4); 19439566063dSJacob Faibussowitsch PetscCall(DMCreate(PetscObjectComm((PetscObject)dm), &sdm)); 19449566063dSJacob Faibussowitsch PetscCall(DMSetType(sdm, DMPLEX)); 19459566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 19469566063dSJacob Faibussowitsch PetscCall(DMSetDimension(sdm, dim)); 1947cd0c2139SMatthew G Knepley switch (dim) { 1948cd0c2139SMatthew G Knepley case 2: 1949d71ae5a4SJacob Faibussowitsch case 3: 1950d71ae5a4SJacob Faibussowitsch PetscCall(DMPlexConstructCohesiveCells_Internal(dm, label, splitLabel, sdm)); 1951d71ae5a4SJacob Faibussowitsch break; 1952d71ae5a4SJacob Faibussowitsch default: 1953d71ae5a4SJacob Faibussowitsch SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Cannot construct cohesive cells for dimension %" PetscInt_FMT, dim); 1954cd0c2139SMatthew G Knepley } 1955cd0c2139SMatthew G Knepley *dmSplit = sdm; 19563ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1957cd0c2139SMatthew G Knepley } 1958cd0c2139SMatthew G Knepley 19590f66a230SMatthew G. Knepley /* Returns the side of the surface for a given cell with a face on the surface */ 1960d71ae5a4SJacob Faibussowitsch static PetscErrorCode GetSurfaceSide_Static(DM dm, DM subdm, PetscInt numSubpoints, const PetscInt *subpoints, PetscInt cell, PetscInt face, PetscBool *pos) 1961d71ae5a4SJacob Faibussowitsch { 19620f66a230SMatthew G. Knepley const PetscInt *cone, *ornt; 19630f66a230SMatthew G. Knepley PetscInt dim, coneSize, c; 19640f66a230SMatthew G. Knepley 19650f66a230SMatthew G. Knepley PetscFunctionBegin; 19660f66a230SMatthew G. Knepley *pos = PETSC_TRUE; 19679566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 19689566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, cell, &coneSize)); 19699566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, cell, &cone)); 19709566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeOrientation(dm, cell, &ornt)); 19710f66a230SMatthew G. Knepley for (c = 0; c < coneSize; ++c) { 19720f66a230SMatthew G. Knepley if (cone[c] == face) { 19730f66a230SMatthew G. Knepley PetscInt o = ornt[c]; 19740f66a230SMatthew G. Knepley 19750f66a230SMatthew G. Knepley if (subdm) { 19760f66a230SMatthew G. Knepley const PetscInt *subcone, *subornt; 19770f66a230SMatthew G. Knepley PetscInt subpoint, subface, subconeSize, sc; 19780f66a230SMatthew G. Knepley 19799566063dSJacob Faibussowitsch PetscCall(PetscFindInt(cell, numSubpoints, subpoints, &subpoint)); 19809566063dSJacob Faibussowitsch PetscCall(PetscFindInt(face, numSubpoints, subpoints, &subface)); 19819566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(subdm, subpoint, &subconeSize)); 19829566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(subdm, subpoint, &subcone)); 19839566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeOrientation(subdm, subpoint, &subornt)); 19840f66a230SMatthew G. Knepley for (sc = 0; sc < subconeSize; ++sc) { 19850f66a230SMatthew G. Knepley if (subcone[sc] == subface) { 19860f66a230SMatthew G. Knepley o = subornt[0]; 19870f66a230SMatthew G. Knepley break; 19880f66a230SMatthew G. Knepley } 19890f66a230SMatthew G. Knepley } 199063a3b9bcSJacob Faibussowitsch PetscCheck(sc < subconeSize, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Could not find subpoint %" PetscInt_FMT " (%" PetscInt_FMT ") in cone for subpoint %" PetscInt_FMT " (%" PetscInt_FMT ")", subface, face, subpoint, cell); 19910f66a230SMatthew G. Knepley } 19920f66a230SMatthew G. Knepley if (o >= 0) *pos = PETSC_TRUE; 19930f66a230SMatthew G. Knepley else *pos = PETSC_FALSE; 19940f66a230SMatthew G. Knepley break; 19950f66a230SMatthew G. Knepley } 19960f66a230SMatthew G. Knepley } 199763a3b9bcSJacob Faibussowitsch PetscCheck(c != coneSize, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Cell %" PetscInt_FMT " in split face %" PetscInt_FMT " support does not have it in the cone", cell, face); 19983ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 19990f66a230SMatthew G. Knepley } 20000f66a230SMatthew G. Knepley 2001d71ae5a4SJacob Faibussowitsch static PetscErrorCode CheckFaultEdge_Private(DM dm, DMLabel label) 2002d71ae5a4SJacob Faibussowitsch { 2003accc9626SMatthew G. Knepley IS facePosIS, faceNegIS, dimIS; 2004accc9626SMatthew G. Knepley const PetscInt *points; 2005accc9626SMatthew G. Knepley PetscInt dim, numPoints, p, shift = 100, shift2 = 200; 2006accc9626SMatthew G. Knepley 2007accc9626SMatthew G. Knepley PetscFunctionBegin; 2008accc9626SMatthew G. Knepley PetscCall(DMGetDimension(dm, &dim)); 2009accc9626SMatthew G. Knepley /* If any faces touching the fault divide cells on either side, split them */ 2010accc9626SMatthew G. Knepley PetscCall(DMLabelGetStratumIS(label, shift + dim - 1, &facePosIS)); 2011accc9626SMatthew G. Knepley PetscCall(DMLabelGetStratumIS(label, -(shift + dim - 1), &faceNegIS)); 2012accc9626SMatthew G. Knepley if (!facePosIS || !faceNegIS) { 2013accc9626SMatthew G. Knepley PetscCall(ISDestroy(&facePosIS)); 2014accc9626SMatthew G. Knepley PetscCall(ISDestroy(&faceNegIS)); 20153ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2016accc9626SMatthew G. Knepley } 2017accc9626SMatthew G. Knepley PetscCall(ISExpand(facePosIS, faceNegIS, &dimIS)); 2018accc9626SMatthew G. Knepley PetscCall(ISDestroy(&facePosIS)); 2019accc9626SMatthew G. Knepley PetscCall(ISDestroy(&faceNegIS)); 2020accc9626SMatthew G. Knepley PetscCall(ISGetLocalSize(dimIS, &numPoints)); 2021accc9626SMatthew G. Knepley PetscCall(ISGetIndices(dimIS, &points)); 2022accc9626SMatthew G. Knepley for (p = 0; p < numPoints; ++p) { 2023accc9626SMatthew G. Knepley const PetscInt point = points[p]; 2024accc9626SMatthew G. Knepley const PetscInt *support; 2025accc9626SMatthew G. Knepley PetscInt supportSize, valA, valB; 2026accc9626SMatthew G. Knepley 2027accc9626SMatthew G. Knepley PetscCall(DMPlexGetSupportSize(dm, point, &supportSize)); 2028accc9626SMatthew G. Knepley if (supportSize != 2) continue; 2029accc9626SMatthew G. Knepley PetscCall(DMPlexGetSupport(dm, point, &support)); 2030accc9626SMatthew G. Knepley PetscCall(DMLabelGetValue(label, support[0], &valA)); 2031accc9626SMatthew G. Knepley PetscCall(DMLabelGetValue(label, support[1], &valB)); 2032accc9626SMatthew G. Knepley if ((valA == -1) || (valB == -1)) continue; 2033accc9626SMatthew G. Knepley if (valA * valB > 0) continue; 2034e1a13daeSMatthew G. Knepley /* Check that this face is not incident on only unsplit faces, meaning has at least one split face */ 2035e1a13daeSMatthew G. Knepley { 2036e1a13daeSMatthew G. Knepley PetscInt *closure = NULL; 2037e1a13daeSMatthew G. Knepley PetscBool split = PETSC_FALSE; 2038e1a13daeSMatthew G. Knepley PetscInt closureSize, cl; 2039e1a13daeSMatthew G. Knepley 2040e1a13daeSMatthew G. Knepley PetscCall(DMPlexGetTransitiveClosure(dm, point, PETSC_TRUE, &closureSize, &closure)); 2041e1a13daeSMatthew G. Knepley for (cl = 0; cl < closureSize * 2; cl += 2) { 2042e1a13daeSMatthew G. Knepley PetscCall(DMLabelGetValue(label, closure[cl], &valA)); 20439371c9d4SSatish Balay if ((valA >= 0) && (valA <= dim)) { 20449371c9d4SSatish Balay split = PETSC_TRUE; 20459371c9d4SSatish Balay break; 20469371c9d4SSatish Balay } 2047e1a13daeSMatthew G. Knepley } 2048e1a13daeSMatthew G. Knepley PetscCall(DMPlexRestoreTransitiveClosure(dm, point, PETSC_TRUE, &closureSize, &closure)); 2049e1a13daeSMatthew G. Knepley if (!split) continue; 2050e1a13daeSMatthew G. Knepley } 2051accc9626SMatthew G. Knepley /* Split the face */ 2052accc9626SMatthew G. Knepley PetscCall(DMLabelGetValue(label, point, &valA)); 2053accc9626SMatthew G. Knepley PetscCall(DMLabelClearValue(label, point, valA)); 2054accc9626SMatthew G. Knepley PetscCall(DMLabelSetValue(label, point, dim - 1)); 2055accc9626SMatthew G. Knepley /* Label its closure: 2056accc9626SMatthew G. Knepley unmarked: label as unsplit 2057accc9626SMatthew G. Knepley incident: relabel as split 2058accc9626SMatthew G. Knepley split: do nothing 2059accc9626SMatthew G. Knepley */ 2060accc9626SMatthew G. Knepley { 2061accc9626SMatthew G. Knepley PetscInt *closure = NULL; 2062accc9626SMatthew G. Knepley PetscInt closureSize, cl, dep; 2063accc9626SMatthew G. Knepley 2064accc9626SMatthew G. Knepley PetscCall(DMPlexGetTransitiveClosure(dm, point, PETSC_TRUE, &closureSize, &closure)); 2065accc9626SMatthew G. Knepley for (cl = 0; cl < closureSize * 2; cl += 2) { 2066accc9626SMatthew G. Knepley PetscCall(DMLabelGetValue(label, closure[cl], &valA)); 2067accc9626SMatthew G. Knepley if (valA == -1) { /* Mark as unsplit */ 2068accc9626SMatthew G. Knepley PetscCall(DMPlexGetPointDepth(dm, closure[cl], &dep)); 2069accc9626SMatthew G. Knepley PetscCall(DMLabelSetValue(label, closure[cl], shift2 + dep)); 2070accc9626SMatthew G. Knepley } else if (((valA >= shift) && (valA < shift2)) || ((valA <= -shift) && (valA > -shift2))) { 2071accc9626SMatthew G. Knepley PetscCall(DMPlexGetPointDepth(dm, closure[cl], &dep)); 2072accc9626SMatthew G. Knepley PetscCall(DMLabelClearValue(label, closure[cl], valA)); 2073accc9626SMatthew G. Knepley PetscCall(DMLabelSetValue(label, closure[cl], dep)); 2074accc9626SMatthew G. Knepley } 2075accc9626SMatthew G. Knepley } 2076accc9626SMatthew G. Knepley PetscCall(DMPlexRestoreTransitiveClosure(dm, point, PETSC_TRUE, &closureSize, &closure)); 2077accc9626SMatthew G. Knepley } 2078accc9626SMatthew G. Knepley } 2079accc9626SMatthew G. Knepley PetscCall(ISRestoreIndices(dimIS, &points)); 2080accc9626SMatthew G. Knepley PetscCall(ISDestroy(&dimIS)); 20813ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2082accc9626SMatthew G. Knepley } 2083accc9626SMatthew G. Knepley 2084cd0c2139SMatthew G Knepley /*@ 20850f66a230SMatthew G. Knepley DMPlexLabelCohesiveComplete - Starting with a label marking points on an internal surface, we add all other mesh pieces 2086cd0c2139SMatthew G Knepley to complete the surface 2087cd0c2139SMatthew G Knepley 2088cd0c2139SMatthew G Knepley Input Parameters: 208920f4b53cSBarry Smith + dm - The `DM` 209020f4b53cSBarry Smith . label - A `DMLabel` marking the surface 209120f4b53cSBarry Smith . blabel - A `DMLabel` marking the vertices on the boundary which will not be duplicated, or `NULL` to find them automatically 209220f4b53cSBarry Smith . bvalue - Value of `DMLabel` marking the vertices on the boundary 2093bb55d314SMatthew G. Knepley . flip - Flag to flip the submesh normal and replace points on the other side 209420f4b53cSBarry Smith - subdm - The `DM` associated with the label, or `NULL` 2095cd0c2139SMatthew G Knepley 2096cd0c2139SMatthew G Knepley Output Parameter: 209720f4b53cSBarry Smith . label - A `DMLabel` marking all surface points 20980f66a230SMatthew G. Knepley 2099cd0c2139SMatthew G Knepley Level: developer 2100cd0c2139SMatthew G Knepley 210120f4b53cSBarry Smith Note: 210220f4b53cSBarry Smith The vertices in blabel are called "unsplit" in the terminology from hybrid cell creation. 210320f4b53cSBarry Smith 21041cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexConstructCohesiveCells()`, `DMPlexLabelComplete()` 2105cd0c2139SMatthew G Knepley @*/ 2106d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexLabelCohesiveComplete(DM dm, DMLabel label, DMLabel blabel, PetscInt bvalue, PetscBool flip, DM subdm) 2107d71ae5a4SJacob Faibussowitsch { 2108d90583fdSMatthew G. Knepley DMLabel depthLabel; 2109accc9626SMatthew G. Knepley IS dimIS, subpointIS = NULL; 211047946fd8SMatthew G. Knepley const PetscInt *points, *subpoints; 2111bb55d314SMatthew G. Knepley const PetscInt rev = flip ? -1 : 1; 2112accc9626SMatthew G. Knepley PetscInt shift = 100, shift2 = 200, shift3 = 300, dim, depth, numPoints, numSubpoints, p, val; 2113cd0c2139SMatthew G Knepley 2114cd0c2139SMatthew G Knepley PetscFunctionBegin; 21159566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepth(dm, &depth)); 21169566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 21179566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthLabel(dm, &depthLabel)); 211847946fd8SMatthew G. Knepley if (subdm) { 21199566063dSJacob Faibussowitsch PetscCall(DMPlexGetSubpointIS(subdm, &subpointIS)); 212047946fd8SMatthew G. Knepley if (subpointIS) { 21219566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(subpointIS, &numSubpoints)); 21229566063dSJacob Faibussowitsch PetscCall(ISGetIndices(subpointIS, &subpoints)); 212347946fd8SMatthew G. Knepley } 212447946fd8SMatthew G. Knepley } 2125d7c8f101SMatthew G. Knepley /* Mark cell on the fault, and its faces which touch the fault: cell orientation for face gives the side of the fault */ 21269566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(label, dim - 1, &dimIS)); 2127accc9626SMatthew G. Knepley if (!dimIS) goto divide; 21289566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(dimIS, &numPoints)); 21299566063dSJacob Faibussowitsch PetscCall(ISGetIndices(dimIS, &points)); 2130d7c8f101SMatthew G. Knepley for (p = 0; p < numPoints; ++p) { /* Loop over fault faces */ 2131cd0c2139SMatthew G Knepley const PetscInt *support; 2132cd0c2139SMatthew G Knepley PetscInt supportSize, s; 2133cd0c2139SMatthew G Knepley 21349566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dm, points[p], &supportSize)); 2135c4419245SMatthew G. Knepley #if 0 2136c4419245SMatthew G. Knepley if (supportSize != 2) { 2137c4419245SMatthew G. Knepley const PetscInt *lp; 2138c4419245SMatthew G. Knepley PetscInt Nlp, pind; 2139c4419245SMatthew G. Knepley 2140c4419245SMatthew G. Knepley /* Check that for a cell with a single support face, that face is in the SF */ 2141c4419245SMatthew G. Knepley /* THis check only works for the remote side. We would need root side information */ 21429566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(dm->sf, NULL, &Nlp, &lp, NULL)); 21439566063dSJacob Faibussowitsch PetscCall(PetscFindInt(points[p], Nlp, lp, &pind)); 214463a3b9bcSJacob Faibussowitsch PetscCheck(pind >= 0,PetscObjectComm((PetscObject) dm), PETSC_ERR_ARG_WRONG, "Split face %" PetscInt_FMT " has %" PetscInt_FMT " != 2 supports, and the face is not shared with another process", points[p], supportSize); 2145c4419245SMatthew G. Knepley } 2146c4419245SMatthew G. Knepley #endif 21479566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(dm, points[p], &support)); 2148cd0c2139SMatthew G Knepley for (s = 0; s < supportSize; ++s) { 21490f66a230SMatthew G. Knepley const PetscInt *cone; 2150cd0c2139SMatthew G Knepley PetscInt coneSize, c; 21510f66a230SMatthew G. Knepley PetscBool pos; 2152cd0c2139SMatthew G Knepley 21539566063dSJacob Faibussowitsch PetscCall(GetSurfaceSide_Static(dm, subdm, numSubpoints, subpoints, support[s], points[p], &pos)); 21549566063dSJacob Faibussowitsch if (pos) PetscCall(DMLabelSetValue(label, support[s], rev * (shift + dim))); 21559566063dSJacob Faibussowitsch else PetscCall(DMLabelSetValue(label, support[s], -rev * (shift + dim))); 21560f66a230SMatthew G. Knepley if (rev < 0) pos = !pos ? PETSC_TRUE : PETSC_FALSE; 21570f66a230SMatthew G. Knepley /* Put faces touching the fault in the label */ 21589566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, support[s], &coneSize)); 21599566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, support[s], &cone)); 2160cd0c2139SMatthew G Knepley for (c = 0; c < coneSize; ++c) { 2161cd0c2139SMatthew G Knepley const PetscInt point = cone[c]; 2162cd0c2139SMatthew G Knepley 21639566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, point, &val)); 2164cd0c2139SMatthew G Knepley if (val == -1) { 2165cd0c2139SMatthew G Knepley PetscInt *closure = NULL; 2166cd0c2139SMatthew G Knepley PetscInt closureSize, cl; 2167cd0c2139SMatthew G Knepley 21689566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(dm, point, PETSC_TRUE, &closureSize, &closure)); 2169cd0c2139SMatthew G Knepley for (cl = 0; cl < closureSize * 2; cl += 2) { 2170cd0c2139SMatthew G Knepley const PetscInt clp = closure[cl]; 2171a0541d8aSMatthew G. Knepley PetscInt bval = -1; 2172cd0c2139SMatthew G Knepley 21739566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, clp, &val)); 21749566063dSJacob Faibussowitsch if (blabel) PetscCall(DMLabelGetValue(blabel, clp, &bval)); 2175a0541d8aSMatthew G. Knepley if ((val >= 0) && (val < dim - 1) && (bval < 0)) { 21769566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(label, point, pos == PETSC_TRUE ? shift + dim - 1 : -(shift + dim - 1))); 2177cd0c2139SMatthew G Knepley break; 2178cd0c2139SMatthew G Knepley } 2179cd0c2139SMatthew G Knepley } 21809566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dm, point, PETSC_TRUE, &closureSize, &closure)); 2181cd0c2139SMatthew G Knepley } 2182cd0c2139SMatthew G Knepley } 2183cd0c2139SMatthew G Knepley } 2184cd0c2139SMatthew G Knepley } 2185accc9626SMatthew G. Knepley PetscCall(ISRestoreIndices(dimIS, &points)); 2186accc9626SMatthew G. Knepley PetscCall(ISDestroy(&dimIS)); 2187a0541d8aSMatthew G. Knepley /* Mark boundary points as unsplit */ 218886200784SMatthew G. Knepley if (blabel) { 2189accc9626SMatthew G. Knepley IS bdIS; 2190accc9626SMatthew G. Knepley 2191caf9e14dSMatthew G. Knepley PetscCall(DMLabelGetStratumIS(blabel, bvalue, &bdIS)); 2192accc9626SMatthew G. Knepley PetscCall(ISGetLocalSize(bdIS, &numPoints)); 2193accc9626SMatthew G. Knepley PetscCall(ISGetIndices(bdIS, &points)); 2194a0541d8aSMatthew G. Knepley for (p = 0; p < numPoints; ++p) { 2195a0541d8aSMatthew G. Knepley const PetscInt point = points[p]; 2196a0541d8aSMatthew G. Knepley PetscInt val, bval; 2197a0541d8aSMatthew G. Knepley 21989566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(blabel, point, &bval)); 2199a0541d8aSMatthew G. Knepley if (bval >= 0) { 22009566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, point, &val)); 2201f7019248SMatthew G. Knepley if ((val < 0) || (val > dim)) { 2202f7019248SMatthew G. Knepley /* This could be a point added from splitting a vertex on an adjacent fault, otherwise its just wrong */ 22039566063dSJacob Faibussowitsch PetscCall(DMLabelClearValue(blabel, point, bval)); 2204f7019248SMatthew G. Knepley } 2205f7019248SMatthew G. Knepley } 2206f7019248SMatthew G. Knepley } 2207f7019248SMatthew G. Knepley for (p = 0; p < numPoints; ++p) { 2208f7019248SMatthew G. Knepley const PetscInt point = points[p]; 2209f7019248SMatthew G. Knepley PetscInt val, bval; 2210f7019248SMatthew G. Knepley 22119566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(blabel, point, &bval)); 2212f7019248SMatthew G. Knepley if (bval >= 0) { 221386200784SMatthew G. Knepley const PetscInt *cone, *support; 221486200784SMatthew G. Knepley PetscInt coneSize, supportSize, s, valA, valB, valE; 221586200784SMatthew G. Knepley 2216a0541d8aSMatthew G. Knepley /* Mark as unsplit */ 22179566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, point, &val)); 2218e1a13daeSMatthew G. Knepley PetscCheck(val >= 0 && val <= dim, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Point %" PetscInt_FMT " has label value %" PetscInt_FMT ", should be part of the fault", point, val); 22199566063dSJacob Faibussowitsch PetscCall(DMLabelClearValue(label, point, val)); 22209566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(label, point, shift2 + val)); 22212c06a818SMatthew G. Knepley /* Check for cross-edge 22222c06a818SMatthew G. Knepley A cross-edge has endpoints which are both on the boundary of the surface, but the edge itself is not. */ 222386200784SMatthew G. Knepley if (val != 0) continue; 22249566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(dm, point, &support)); 22259566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dm, point, &supportSize)); 222686200784SMatthew G. Knepley for (s = 0; s < supportSize; ++s) { 22279566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, support[s], &cone)); 22289566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, support[s], &coneSize)); 222963a3b9bcSJacob Faibussowitsch PetscCheck(coneSize == 2, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Edge %" PetscInt_FMT " has %" PetscInt_FMT " vertices != 2", support[s], coneSize); 22309566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(blabel, cone[0], &valA)); 22319566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(blabel, cone[1], &valB)); 22329566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(blabel, support[s], &valE)); 22339566063dSJacob Faibussowitsch if ((valE < 0) && (valA >= 0) && (valB >= 0) && (cone[0] != cone[1])) PetscCall(DMLabelSetValue(blabel, support[s], 2)); 223486200784SMatthew G. Knepley } 2235a0541d8aSMatthew G. Knepley } 2236a0541d8aSMatthew G. Knepley } 2237accc9626SMatthew G. Knepley PetscCall(ISRestoreIndices(bdIS, &points)); 2238accc9626SMatthew G. Knepley PetscCall(ISDestroy(&bdIS)); 2239a0541d8aSMatthew G. Knepley } 2240b6dfa339SMatthew G. Knepley /* Mark ghost fault cells */ 2241b6dfa339SMatthew G. Knepley { 2242b6dfa339SMatthew G. Knepley PetscSF sf; 2243b6dfa339SMatthew G. Knepley const PetscInt *leaves; 2244b6dfa339SMatthew G. Knepley PetscInt Nl, l; 2245b6dfa339SMatthew G. Knepley 2246b6dfa339SMatthew G. Knepley PetscCall(DMGetPointSF(dm, &sf)); 2247b6dfa339SMatthew G. Knepley PetscCall(PetscSFGetGraph(sf, NULL, &Nl, &leaves, NULL)); 2248accc9626SMatthew G. Knepley PetscCall(DMLabelGetStratumIS(label, dim - 1, &dimIS)); 2249accc9626SMatthew G. Knepley if (!dimIS) goto divide; 2250accc9626SMatthew G. Knepley PetscCall(ISGetLocalSize(dimIS, &numPoints)); 2251accc9626SMatthew G. Knepley PetscCall(ISGetIndices(dimIS, &points)); 2252b6dfa339SMatthew G. Knepley if (Nl > 0) { 2253b6dfa339SMatthew G. Knepley for (p = 0; p < numPoints; ++p) { 2254b6dfa339SMatthew G. Knepley const PetscInt point = points[p]; 2255b6dfa339SMatthew G. Knepley PetscInt val; 2256b6dfa339SMatthew G. Knepley 2257b6dfa339SMatthew G. Knepley PetscCall(PetscFindInt(point, Nl, leaves, &l)); 2258b6dfa339SMatthew G. Knepley if (l >= 0) { 2259b6dfa339SMatthew G. Knepley PetscInt *closure = NULL; 2260b6dfa339SMatthew G. Knepley PetscInt closureSize, cl; 2261b6dfa339SMatthew G. Knepley 2262b6dfa339SMatthew G. Knepley PetscCall(DMLabelGetValue(label, point, &val)); 2263b6dfa339SMatthew G. Knepley PetscCheck((val == dim - 1) || (val == shift2 + dim - 1), PETSC_COMM_SELF, PETSC_ERR_PLIB, "Point %" PetscInt_FMT " has label value %" PetscInt_FMT ", should be a fault face", point, val); 2264b6dfa339SMatthew G. Knepley PetscCall(DMLabelClearValue(label, point, val)); 2265b6dfa339SMatthew G. Knepley PetscCall(DMLabelSetValue(label, point, shift3 + val)); 2266b6dfa339SMatthew G. Knepley PetscCall(DMPlexGetTransitiveClosure(dm, point, PETSC_TRUE, &closureSize, &closure)); 2267accc9626SMatthew G. Knepley for (cl = 2; cl < closureSize * 2; cl += 2) { 2268b6dfa339SMatthew G. Knepley const PetscInt clp = closure[cl]; 2269b6dfa339SMatthew G. Knepley 2270b6dfa339SMatthew G. Knepley PetscCall(DMLabelGetValue(label, clp, &val)); 2271b6dfa339SMatthew G. Knepley PetscCheck(val != -1, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Point %" PetscInt_FMT " is missing from label, but is in the closure of a fault face", point); 2272b6dfa339SMatthew G. Knepley PetscCall(DMLabelClearValue(label, clp, val)); 2273b6dfa339SMatthew G. Knepley PetscCall(DMLabelSetValue(label, clp, shift3 + val)); 2274b6dfa339SMatthew G. Knepley } 2275b6dfa339SMatthew G. Knepley PetscCall(DMPlexRestoreTransitiveClosure(dm, point, PETSC_TRUE, &closureSize, &closure)); 2276b6dfa339SMatthew G. Knepley } 2277b6dfa339SMatthew G. Knepley } 2278b6dfa339SMatthew G. Knepley } 2279b6dfa339SMatthew G. Knepley PetscCall(ISRestoreIndices(dimIS, &points)); 2280b6dfa339SMatthew G. Knepley PetscCall(ISDestroy(&dimIS)); 2281accc9626SMatthew G. Knepley } 2282accc9626SMatthew G. Knepley divide: 2283b6dfa339SMatthew G. Knepley if (subpointIS) PetscCall(ISRestoreIndices(subpointIS, &subpoints)); 2284accc9626SMatthew G. Knepley PetscCall(DMPlexLabelFaultHalo(dm, label)); 2285accc9626SMatthew G. Knepley PetscCall(CheckFaultEdge_Private(dm, label)); 22863ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2287cd0c2139SMatthew G Knepley } 2288cd0c2139SMatthew G Knepley 2289720e594eSMatthew G. Knepley /* Check that no cell have all vertices on the fault */ 229066976f2fSJacob Faibussowitsch static PetscErrorCode DMPlexCheckValidSubmesh_Private(DM dm, DMLabel label, DM subdm) 2291d71ae5a4SJacob Faibussowitsch { 2292720e594eSMatthew G. Knepley IS subpointIS; 2293720e594eSMatthew G. Knepley const PetscInt *dmpoints; 2294720e594eSMatthew G. Knepley PetscInt defaultValue, cStart, cEnd, c, vStart, vEnd; 2295720e594eSMatthew G. Knepley 2296720e594eSMatthew G. Knepley PetscFunctionBegin; 22973ba16761SJacob Faibussowitsch if (!label) PetscFunctionReturn(PETSC_SUCCESS); 22989566063dSJacob Faibussowitsch PetscCall(DMLabelGetDefaultValue(label, &defaultValue)); 22999566063dSJacob Faibussowitsch PetscCall(DMPlexGetSubpointIS(subdm, &subpointIS)); 23003ba16761SJacob Faibussowitsch if (!subpointIS) PetscFunctionReturn(PETSC_SUCCESS); 23019566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(subdm, 0, &cStart, &cEnd)); 23029566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthStratum(dm, 0, &vStart, &vEnd)); 23039566063dSJacob Faibussowitsch PetscCall(ISGetIndices(subpointIS, &dmpoints)); 2304720e594eSMatthew G. Knepley for (c = cStart; c < cEnd; ++c) { 2305720e594eSMatthew G. Knepley PetscBool invalidCell = PETSC_TRUE; 2306720e594eSMatthew G. Knepley PetscInt *closure = NULL; 2307720e594eSMatthew G. Knepley PetscInt closureSize, cl; 2308720e594eSMatthew G. Knepley 23099566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(dm, dmpoints[c], PETSC_TRUE, &closureSize, &closure)); 2310720e594eSMatthew G. Knepley for (cl = 0; cl < closureSize * 2; cl += 2) { 2311720e594eSMatthew G. Knepley PetscInt value = 0; 2312720e594eSMatthew G. Knepley 2313720e594eSMatthew G. Knepley if ((closure[cl] < vStart) || (closure[cl] >= vEnd)) continue; 23149566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, closure[cl], &value)); 23159371c9d4SSatish Balay if (value == defaultValue) { 23169371c9d4SSatish Balay invalidCell = PETSC_FALSE; 23179371c9d4SSatish Balay break; 23189371c9d4SSatish Balay } 2319720e594eSMatthew G. Knepley } 23209566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dm, dmpoints[c], PETSC_TRUE, &closureSize, &closure)); 2321720e594eSMatthew G. Knepley if (invalidCell) { 23229566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(subpointIS, &dmpoints)); 23239566063dSJacob Faibussowitsch PetscCall(ISDestroy(&subpointIS)); 23249566063dSJacob Faibussowitsch PetscCall(DMDestroy(&subdm)); 232563a3b9bcSJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Ambiguous submesh. Cell %" PetscInt_FMT " has all of its vertices on the submesh.", dmpoints[c]); 2326720e594eSMatthew G. Knepley } 2327720e594eSMatthew G. Knepley } 23289566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(subpointIS, &dmpoints)); 23293ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2330720e594eSMatthew G. Knepley } 2331720e594eSMatthew G. Knepley 2332c08575a3SMatthew G. Knepley /*@ 23333cf72582SMatthew G. Knepley DMPlexCreateHybridMesh - Create a mesh with hybrid cells along an internal interface 23343cf72582SMatthew G. Knepley 233520f4b53cSBarry Smith Collective 23363cf72582SMatthew G. Knepley 23373cf72582SMatthew G. Knepley Input Parameters: 233820f4b53cSBarry Smith + dm - The original `DM` 2339720e594eSMatthew G. Knepley . label - The label specifying the interface vertices 2340caf9e14dSMatthew G. Knepley . bdlabel - The optional label specifying the interface boundary vertices 2341caf9e14dSMatthew G. Knepley - bdvalue - Value of optional label specifying the interface boundary vertices 23423cf72582SMatthew G. Knepley 23433cf72582SMatthew G. Knepley Output Parameters: 234420f4b53cSBarry Smith + hybridLabel - The label fully marking the interface, or `NULL` if no output is desired 234520f4b53cSBarry Smith . splitLabel - The label containing the split points, or `NULL` if no output is desired 234620f4b53cSBarry Smith . dmInterface - The new interface `DM`, or `NULL` 234720f4b53cSBarry Smith - dmHybrid - The new `DM` with cohesive cells 23483cf72582SMatthew G. Knepley 234920f4b53cSBarry Smith Level: developer 235020f4b53cSBarry Smith 235120f4b53cSBarry Smith Note: 235220f4b53cSBarry Smith The hybridLabel indicates what parts of the original mesh impinged on the division surface. For points 23536eccb800SMatthew Knepley directly on the division surface, they are labeled with their dimension, so an edge 7 on the division surface would be 23546eccb800SMatthew Knepley 7 (1) in hybridLabel. For points that impinge from the positive side, they are labeled with 100+dim, so an edge 6 with 23556eccb800SMatthew Knepley one vertex 3 on the surface would be 6 (101) and 3 (0) in hybridLabel. If an edge 9 from the negative side of the 23566eccb800SMatthew Knepley surface also hits vertex 3, it would be 9 (-101) in hybridLabel. 23576eccb800SMatthew Knepley 23586eccb800SMatthew Knepley The splitLabel indicates what points in the new hybrid mesh were the result of splitting points in the original 235940cdb708SMatthew Knepley mesh. The label value is $\pm 100+dim$ for each point. For example, if two edges 10 and 14 in the hybrid resulting from 23606eccb800SMatthew Knepley splitting an edge in the original mesh, you would have 10 (101) and 14 (-101) in the splitLabel. 23616eccb800SMatthew Knepley 236220f4b53cSBarry Smith The dmInterface is a `DM` built from the original division surface. It has a label which can be retrieved using 236320f4b53cSBarry Smith `DMPlexGetSubpointMap()` which maps each point back to the point in the surface of the original mesh. 23646eccb800SMatthew Knepley 23651cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexConstructCohesiveCells()`, `DMPlexLabelCohesiveComplete()`, `DMPlexGetSubpointMap()`, `DMCreate()` 23663cf72582SMatthew G. Knepley @*/ 2367d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexCreateHybridMesh(DM dm, DMLabel label, DMLabel bdlabel, PetscInt bdvalue, DMLabel *hybridLabel, DMLabel *splitLabel, DM *dmInterface, DM *dmHybrid) 2368d71ae5a4SJacob Faibussowitsch { 23693cf72582SMatthew G. Knepley DM idm; 23707db7e0a7SMatthew G. Knepley DMLabel subpointMap, hlabel, slabel = NULL; 23713cf72582SMatthew G. Knepley PetscInt dim; 23723cf72582SMatthew G. Knepley 23733cf72582SMatthew G. Knepley PetscFunctionBegin; 23743cf72582SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 23754f572ea9SToby Isaac if (label) PetscAssertPointer(label, 2); 23764f572ea9SToby Isaac if (bdlabel) PetscAssertPointer(bdlabel, 3); 23774f572ea9SToby Isaac if (hybridLabel) PetscAssertPointer(hybridLabel, 5); 23784f572ea9SToby Isaac if (splitLabel) PetscAssertPointer(splitLabel, 6); 23794f572ea9SToby Isaac if (dmInterface) PetscAssertPointer(dmInterface, 7); 23804f572ea9SToby Isaac PetscAssertPointer(dmHybrid, 8); 23819566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 23829566063dSJacob Faibussowitsch PetscCall(DMPlexCreateSubmesh(dm, label, 1, PETSC_FALSE, &idm)); 23839566063dSJacob Faibussowitsch PetscCall(DMPlexCheckValidSubmesh_Private(dm, label, idm)); 23849566063dSJacob Faibussowitsch PetscCall(DMPlexOrient(idm)); 23859566063dSJacob Faibussowitsch PetscCall(DMPlexGetSubpointMap(idm, &subpointMap)); 23869566063dSJacob Faibussowitsch PetscCall(DMLabelDuplicate(subpointMap, &hlabel)); 23879566063dSJacob Faibussowitsch PetscCall(DMLabelClearStratum(hlabel, dim)); 23887db7e0a7SMatthew G. Knepley if (splitLabel) { 23897db7e0a7SMatthew G. Knepley const char *name; 23907db7e0a7SMatthew G. Knepley char sname[PETSC_MAX_PATH_LEN]; 23917db7e0a7SMatthew G. Knepley 23929566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)hlabel, &name)); 2393c6a7a370SJeremy L Thompson PetscCall(PetscStrncpy(sname, name, sizeof(sname))); 2394c6a7a370SJeremy L Thompson PetscCall(PetscStrlcat(sname, " split", sizeof(sname))); 23959566063dSJacob Faibussowitsch PetscCall(DMLabelCreate(PETSC_COMM_SELF, sname, &slabel)); 23967db7e0a7SMatthew G. Knepley } 2397caf9e14dSMatthew G. Knepley PetscCall(DMPlexLabelCohesiveComplete(dm, hlabel, bdlabel, bdvalue, PETSC_FALSE, idm)); 23989371c9d4SSatish Balay if (dmInterface) { 23999371c9d4SSatish Balay *dmInterface = idm; 24009371c9d4SSatish Balay } else PetscCall(DMDestroy(&idm)); 24019566063dSJacob Faibussowitsch PetscCall(DMPlexConstructCohesiveCells(dm, hlabel, slabel, dmHybrid)); 24025de52c6dSVaclav Hapla PetscCall(DMPlexCopy_Internal(dm, PETSC_TRUE, PETSC_TRUE, *dmHybrid)); 24033cf72582SMatthew G. Knepley if (hybridLabel) *hybridLabel = hlabel; 24049566063dSJacob Faibussowitsch else PetscCall(DMLabelDestroy(&hlabel)); 24057db7e0a7SMatthew G. Knepley if (splitLabel) *splitLabel = slabel; 24064a7ee7d0SMatthew G. Knepley { 24074a7ee7d0SMatthew G. Knepley DM cdm; 24084a7ee7d0SMatthew G. Knepley DMLabel ctLabel; 24094a7ee7d0SMatthew G. Knepley 24104a7ee7d0SMatthew G. Knepley /* We need to somehow share the celltype label with the coordinate dm */ 24119566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDM(*dmHybrid, &cdm)); 24129566063dSJacob Faibussowitsch PetscCall(DMPlexGetCellTypeLabel(*dmHybrid, &ctLabel)); 24139566063dSJacob Faibussowitsch PetscCall(DMSetLabel(cdm, ctLabel)); 24144a7ee7d0SMatthew G. Knepley } 24153ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2416cd0c2139SMatthew G Knepley } 2417cd0c2139SMatthew G Knepley 2418efa14ee0SMatthew G Knepley /* Here we need the explicit assumption that: 2419efa14ee0SMatthew G Knepley 2420efa14ee0SMatthew G Knepley For any marked cell, the marked vertices constitute a single face 2421efa14ee0SMatthew G Knepley */ 2422d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexMarkSubmesh_Uninterpolated(DM dm, DMLabel vertexLabel, PetscInt value, DMLabel subpointMap, PetscInt *numFaces, PetscInt *nFV, DM subdm) 2423d71ae5a4SJacob Faibussowitsch { 2424fed694aaSMatthew G. Knepley IS subvertexIS = NULL; 2425efa14ee0SMatthew G Knepley const PetscInt *subvertices; 2426412e9a14SMatthew G. Knepley PetscInt *pStart, *pEnd, pSize; 2427efa14ee0SMatthew G Knepley PetscInt depth, dim, d, numSubVerticesInitial = 0, v; 2428efa14ee0SMatthew G Knepley 2429efa14ee0SMatthew G Knepley PetscFunctionBegin; 2430efa14ee0SMatthew G Knepley *numFaces = 0; 2431efa14ee0SMatthew G Knepley *nFV = 0; 24329566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepth(dm, &depth)); 24339566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 243477d178adSMatthew G. Knepley pSize = PetscMax(depth, dim) + 1; 24359566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(pSize, &pStart, pSize, &pEnd)); 243648a46eb9SPierre Jolivet for (d = 0; d <= depth; ++d) PetscCall(DMPlexGetSimplexOrBoxCells(dm, depth - d, &pStart[d], &pEnd[d])); 2437efa14ee0SMatthew G Knepley /* Loop over initial vertices and mark all faces in the collective star() */ 24389566063dSJacob Faibussowitsch if (vertexLabel) PetscCall(DMLabelGetStratumIS(vertexLabel, value, &subvertexIS)); 2439efa14ee0SMatthew G Knepley if (subvertexIS) { 24409566063dSJacob Faibussowitsch PetscCall(ISGetSize(subvertexIS, &numSubVerticesInitial)); 24419566063dSJacob Faibussowitsch PetscCall(ISGetIndices(subvertexIS, &subvertices)); 2442efa14ee0SMatthew G Knepley } 2443efa14ee0SMatthew G Knepley for (v = 0; v < numSubVerticesInitial; ++v) { 2444efa14ee0SMatthew G Knepley const PetscInt vertex = subvertices[v]; 24450298fd71SBarry Smith PetscInt *star = NULL; 2446efa14ee0SMatthew G Knepley PetscInt starSize, s, numCells = 0, c; 2447efa14ee0SMatthew G Knepley 24489566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(dm, vertex, PETSC_FALSE, &starSize, &star)); 2449efa14ee0SMatthew G Knepley for (s = 0; s < starSize * 2; s += 2) { 2450efa14ee0SMatthew G Knepley const PetscInt point = star[s]; 2451efa14ee0SMatthew G Knepley if ((point >= pStart[depth]) && (point < pEnd[depth])) star[numCells++] = point; 2452efa14ee0SMatthew G Knepley } 2453efa14ee0SMatthew G Knepley for (c = 0; c < numCells; ++c) { 2454efa14ee0SMatthew G Knepley const PetscInt cell = star[c]; 24550298fd71SBarry Smith PetscInt *closure = NULL; 2456efa14ee0SMatthew G Knepley PetscInt closureSize, cl; 2457efa14ee0SMatthew G Knepley PetscInt cellLoc, numCorners = 0, faceSize = 0; 2458efa14ee0SMatthew G Knepley 24599566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(subpointMap, cell, &cellLoc)); 246065560c7fSMatthew G Knepley if (cellLoc == 2) continue; 246163a3b9bcSJacob Faibussowitsch PetscCheck(cellLoc < 0, PetscObjectComm((PetscObject)dm), PETSC_ERR_PLIB, "Cell %" PetscInt_FMT " has dimension %" PetscInt_FMT " in the surface label", cell, cellLoc); 24629566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(dm, cell, PETSC_TRUE, &closureSize, &closure)); 2463efa14ee0SMatthew G Knepley for (cl = 0; cl < closureSize * 2; cl += 2) { 2464efa14ee0SMatthew G Knepley const PetscInt point = closure[cl]; 2465efa14ee0SMatthew G Knepley PetscInt vertexLoc; 2466efa14ee0SMatthew G Knepley 2467efa14ee0SMatthew G Knepley if ((point >= pStart[0]) && (point < pEnd[0])) { 2468efa14ee0SMatthew G Knepley ++numCorners; 24699566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(vertexLabel, point, &vertexLoc)); 2470830e53efSMatthew G. Knepley if (vertexLoc == value) closure[faceSize++] = point; 2471efa14ee0SMatthew G Knepley } 2472efa14ee0SMatthew G Knepley } 24739566063dSJacob Faibussowitsch if (!(*nFV)) PetscCall(DMPlexGetNumFaceVertices(dm, dim, numCorners, nFV)); 247463a3b9bcSJacob Faibussowitsch PetscCheck(faceSize <= *nFV, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Invalid submesh: Too many vertices %" PetscInt_FMT " of an element on the surface", faceSize); 2475efa14ee0SMatthew G Knepley if (faceSize == *nFV) { 2476007baee2SMatthew G. Knepley const PetscInt *cells = NULL; 2477007baee2SMatthew G. Knepley PetscInt numCells, nc; 2478007baee2SMatthew G. Knepley 2479efa14ee0SMatthew G Knepley ++(*numFaces); 248048a46eb9SPierre Jolivet for (cl = 0; cl < faceSize; ++cl) PetscCall(DMLabelSetValue(subpointMap, closure[cl], 0)); 24819566063dSJacob Faibussowitsch PetscCall(DMPlexGetJoin(dm, faceSize, closure, &numCells, &cells)); 248248a46eb9SPierre Jolivet for (nc = 0; nc < numCells; ++nc) PetscCall(DMLabelSetValue(subpointMap, cells[nc], 2)); 24839566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreJoin(dm, faceSize, closure, &numCells, &cells)); 2484efa14ee0SMatthew G Knepley } 24859566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dm, cell, PETSC_TRUE, &closureSize, &closure)); 2486efa14ee0SMatthew G Knepley } 24879566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dm, vertex, PETSC_FALSE, &starSize, &star)); 2488efa14ee0SMatthew G Knepley } 248948a46eb9SPierre Jolivet if (subvertexIS) PetscCall(ISRestoreIndices(subvertexIS, &subvertices)); 24909566063dSJacob Faibussowitsch PetscCall(ISDestroy(&subvertexIS)); 24919566063dSJacob Faibussowitsch PetscCall(PetscFree2(pStart, pEnd)); 24923ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2493efa14ee0SMatthew G Knepley } 2494efa14ee0SMatthew G Knepley 2495d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexMarkSubmesh_Interpolated(DM dm, DMLabel vertexLabel, PetscInt value, PetscBool markedFaces, DMLabel subpointMap, DM subdm) 2496d71ae5a4SJacob Faibussowitsch { 249734b4c39eSMatthew G. Knepley IS subvertexIS = NULL; 2498efa14ee0SMatthew G Knepley const PetscInt *subvertices; 2499412e9a14SMatthew G. Knepley PetscInt *pStart, *pEnd; 2500efa14ee0SMatthew G Knepley PetscInt dim, d, numSubVerticesInitial = 0, v; 2501efa14ee0SMatthew G Knepley 2502efa14ee0SMatthew G Knepley PetscFunctionBegin; 25039566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 25049566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(dim + 1, &pStart, dim + 1, &pEnd)); 250548a46eb9SPierre Jolivet for (d = 0; d <= dim; ++d) PetscCall(DMPlexGetSimplexOrBoxCells(dm, dim - d, &pStart[d], &pEnd[d])); 2506efa14ee0SMatthew G Knepley /* Loop over initial vertices and mark all faces in the collective star() */ 250734b4c39eSMatthew G. Knepley if (vertexLabel) { 25089566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(vertexLabel, value, &subvertexIS)); 2509efa14ee0SMatthew G Knepley if (subvertexIS) { 25109566063dSJacob Faibussowitsch PetscCall(ISGetSize(subvertexIS, &numSubVerticesInitial)); 25119566063dSJacob Faibussowitsch PetscCall(ISGetIndices(subvertexIS, &subvertices)); 2512efa14ee0SMatthew G Knepley } 251334b4c39eSMatthew G. Knepley } 2514efa14ee0SMatthew G Knepley for (v = 0; v < numSubVerticesInitial; ++v) { 2515efa14ee0SMatthew G Knepley const PetscInt vertex = subvertices[v]; 25160298fd71SBarry Smith PetscInt *star = NULL; 2517efa14ee0SMatthew G Knepley PetscInt starSize, s, numFaces = 0, f; 2518efa14ee0SMatthew G Knepley 25199566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(dm, vertex, PETSC_FALSE, &starSize, &star)); 2520efa14ee0SMatthew G Knepley for (s = 0; s < starSize * 2; s += 2) { 2521efa14ee0SMatthew G Knepley const PetscInt point = star[s]; 2522158acfadSMatthew G. Knepley PetscInt faceLoc; 2523158acfadSMatthew G. Knepley 2524158acfadSMatthew G. Knepley if ((point >= pStart[dim - 1]) && (point < pEnd[dim - 1])) { 2525158acfadSMatthew G. Knepley if (markedFaces) { 25269566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(vertexLabel, point, &faceLoc)); 2527158acfadSMatthew G. Knepley if (faceLoc < 0) continue; 2528158acfadSMatthew G. Knepley } 2529158acfadSMatthew G. Knepley star[numFaces++] = point; 2530158acfadSMatthew G. Knepley } 2531efa14ee0SMatthew G Knepley } 2532efa14ee0SMatthew G Knepley for (f = 0; f < numFaces; ++f) { 2533efa14ee0SMatthew G Knepley const PetscInt face = star[f]; 25340298fd71SBarry Smith PetscInt *closure = NULL; 2535efa14ee0SMatthew G Knepley PetscInt closureSize, c; 2536efa14ee0SMatthew G Knepley PetscInt faceLoc; 2537efa14ee0SMatthew G Knepley 25389566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(subpointMap, face, &faceLoc)); 2539efa14ee0SMatthew G Knepley if (faceLoc == dim - 1) continue; 254063a3b9bcSJacob Faibussowitsch PetscCheck(faceLoc < 0, PetscObjectComm((PetscObject)dm), PETSC_ERR_PLIB, "Face %" PetscInt_FMT " has dimension %" PetscInt_FMT " in the surface label", face, faceLoc); 25419566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(dm, face, PETSC_TRUE, &closureSize, &closure)); 2542efa14ee0SMatthew G Knepley for (c = 0; c < closureSize * 2; c += 2) { 2543efa14ee0SMatthew G Knepley const PetscInt point = closure[c]; 2544efa14ee0SMatthew G Knepley PetscInt vertexLoc; 2545efa14ee0SMatthew G Knepley 2546efa14ee0SMatthew G Knepley if ((point >= pStart[0]) && (point < pEnd[0])) { 25479566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(vertexLabel, point, &vertexLoc)); 2548830e53efSMatthew G. Knepley if (vertexLoc != value) break; 2549efa14ee0SMatthew G Knepley } 2550efa14ee0SMatthew G Knepley } 2551efa14ee0SMatthew G Knepley if (c == closureSize * 2) { 2552efa14ee0SMatthew G Knepley const PetscInt *support; 2553efa14ee0SMatthew G Knepley PetscInt supportSize, s; 2554efa14ee0SMatthew G Knepley 2555efa14ee0SMatthew G Knepley for (c = 0; c < closureSize * 2; c += 2) { 2556efa14ee0SMatthew G Knepley const PetscInt point = closure[c]; 2557efa14ee0SMatthew G Knepley 2558efa14ee0SMatthew G Knepley for (d = 0; d < dim; ++d) { 2559efa14ee0SMatthew G Knepley if ((point >= pStart[d]) && (point < pEnd[d])) { 25609566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(subpointMap, point, d)); 2561efa14ee0SMatthew G Knepley break; 2562efa14ee0SMatthew G Knepley } 2563efa14ee0SMatthew G Knepley } 2564efa14ee0SMatthew G Knepley } 25659566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dm, face, &supportSize)); 25669566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(dm, face, &support)); 256748a46eb9SPierre Jolivet for (s = 0; s < supportSize; ++s) PetscCall(DMLabelSetValue(subpointMap, support[s], dim)); 2568efa14ee0SMatthew G Knepley } 25699566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dm, face, PETSC_TRUE, &closureSize, &closure)); 2570efa14ee0SMatthew G Knepley } 25719566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dm, vertex, PETSC_FALSE, &starSize, &star)); 2572efa14ee0SMatthew G Knepley } 25739566063dSJacob Faibussowitsch if (subvertexIS) PetscCall(ISRestoreIndices(subvertexIS, &subvertices)); 25749566063dSJacob Faibussowitsch PetscCall(ISDestroy(&subvertexIS)); 25759566063dSJacob Faibussowitsch PetscCall(PetscFree2(pStart, pEnd)); 25763ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2577efa14ee0SMatthew G Knepley } 2578efa14ee0SMatthew G Knepley 2579d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexMarkCohesiveSubmesh_Uninterpolated(DM dm, PetscBool hasLagrange, const char labelname[], PetscInt value, DMLabel subpointMap, PetscInt *numFaces, PetscInt *nFV, PetscInt *subCells[], DM subdm) 2580d71ae5a4SJacob Faibussowitsch { 258127c04023SMatthew G. Knepley DMLabel label = NULL; 2582766ab985SMatthew G. Knepley const PetscInt *cone; 25839fc93327SToby Isaac PetscInt dim, cMax, cEnd, c, subc = 0, p, coneSize = -1; 2584766ab985SMatthew G. Knepley 2585812bfc34SJed Brown PetscFunctionBegin; 2586c0ed958bSJed Brown *numFaces = 0; 2587c0ed958bSJed Brown *nFV = 0; 25889566063dSJacob Faibussowitsch if (labelname) PetscCall(DMGetLabel(dm, labelname, &label)); 2589fed694aaSMatthew G. Knepley *subCells = NULL; 25909566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 25919566063dSJacob Faibussowitsch PetscCall(DMPlexGetTensorPrismBounds_Internal(dm, dim, &cMax, &cEnd)); 25923ba16761SJacob Faibussowitsch if (cMax < 0) PetscFunctionReturn(PETSC_SUCCESS); 259327c04023SMatthew G. Knepley if (label) { 259427c04023SMatthew G. Knepley for (c = cMax; c < cEnd; ++c) { 259527c04023SMatthew G. Knepley PetscInt val; 259627c04023SMatthew G. Knepley 25979566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, c, &val)); 259827c04023SMatthew G. Knepley if (val == value) { 259927c04023SMatthew G. Knepley ++(*numFaces); 26009566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, c, &coneSize)); 260127c04023SMatthew G. Knepley } 260227c04023SMatthew G. Knepley } 260327c04023SMatthew G. Knepley } else { 2604766ab985SMatthew G. Knepley *numFaces = cEnd - cMax; 26059566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, cMax, &coneSize)); 260627c04023SMatthew G. Knepley } 26079566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(*numFaces * 2, subCells)); 26083ba16761SJacob Faibussowitsch if (!(*numFaces)) PetscFunctionReturn(PETSC_SUCCESS); 26099fc93327SToby Isaac *nFV = hasLagrange ? coneSize / 3 : coneSize / 2; 2610766ab985SMatthew G. Knepley for (c = cMax; c < cEnd; ++c) { 2611766ab985SMatthew G. Knepley const PetscInt *cells; 2612766ab985SMatthew G. Knepley PetscInt numCells; 2613766ab985SMatthew G. Knepley 261427c04023SMatthew G. Knepley if (label) { 261527c04023SMatthew G. Knepley PetscInt val; 261627c04023SMatthew G. Knepley 26179566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, c, &val)); 261827c04023SMatthew G. Knepley if (val != value) continue; 261927c04023SMatthew G. Knepley } 26209566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, c, &cone)); 262148a46eb9SPierre Jolivet for (p = 0; p < *nFV; ++p) PetscCall(DMLabelSetValue(subpointMap, cone[p], 0)); 2622766ab985SMatthew G. Knepley /* Negative face */ 26239566063dSJacob Faibussowitsch PetscCall(DMPlexGetJoin(dm, *nFV, cone, &numCells, &cells)); 262427234c99SMatthew G. Knepley /* Not true in parallel 262508401ef6SPierre Jolivet PetscCheck(numCells == 2,PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Cohesive cells should separate two cells"); */ 2626766ab985SMatthew G. Knepley for (p = 0; p < numCells; ++p) { 26279566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(subpointMap, cells[p], 2)); 262827234c99SMatthew G. Knepley (*subCells)[subc++] = cells[p]; 2629766ab985SMatthew G. Knepley } 26309566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreJoin(dm, *nFV, cone, &numCells, &cells)); 2631766ab985SMatthew G. Knepley /* Positive face is not included */ 2632766ab985SMatthew G. Knepley } 26333ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2634766ab985SMatthew G. Knepley } 2635766ab985SMatthew G. Knepley 2636d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexMarkCohesiveSubmesh_Interpolated(DM dm, DMLabel label, PetscInt value, DMLabel subpointMap, DM subdm) 2637d71ae5a4SJacob Faibussowitsch { 2638766ab985SMatthew G. Knepley PetscInt *pStart, *pEnd; 2639766ab985SMatthew G. Knepley PetscInt dim, cMax, cEnd, c, d; 2640766ab985SMatthew G. Knepley 2641812bfc34SJed Brown PetscFunctionBegin; 26429566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 26439566063dSJacob Faibussowitsch PetscCall(DMPlexGetTensorPrismBounds_Internal(dm, dim, &cMax, &cEnd)); 26443ba16761SJacob Faibussowitsch if (cMax < 0) PetscFunctionReturn(PETSC_SUCCESS); 26459566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(dim + 1, &pStart, dim + 1, &pEnd)); 26469566063dSJacob Faibussowitsch for (d = 0; d <= dim; ++d) PetscCall(DMPlexGetDepthStratum(dm, d, &pStart[d], &pEnd[d])); 2647766ab985SMatthew G. Knepley for (c = cMax; c < cEnd; ++c) { 2648766ab985SMatthew G. Knepley const PetscInt *cone; 2649766ab985SMatthew G. Knepley PetscInt *closure = NULL; 2650b3154360SMatthew G. Knepley PetscInt fconeSize, coneSize, closureSize, cl, val; 2651766ab985SMatthew G. Knepley 265227c04023SMatthew G. Knepley if (label) { 26539566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, c, &val)); 265427c04023SMatthew G. Knepley if (val != value) continue; 265527c04023SMatthew G. Knepley } 26569566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, c, &coneSize)); 26579566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, c, &cone)); 26589566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, cone[0], &fconeSize)); 26591dca8a05SBarry Smith PetscCheck(coneSize == (fconeSize ? fconeSize : 1) + 2, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Cohesive cells should separate two cells"); 2660b3154360SMatthew G. Knepley /* Negative face */ 26619566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(dm, cone[0], PETSC_TRUE, &closureSize, &closure)); 2662766ab985SMatthew G. Knepley for (cl = 0; cl < closureSize * 2; cl += 2) { 2663766ab985SMatthew G. Knepley const PetscInt point = closure[cl]; 2664766ab985SMatthew G. Knepley 2665766ab985SMatthew G. Knepley for (d = 0; d <= dim; ++d) { 2666766ab985SMatthew G. Knepley if ((point >= pStart[d]) && (point < pEnd[d])) { 26679566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(subpointMap, point, d)); 2668766ab985SMatthew G. Knepley break; 2669766ab985SMatthew G. Knepley } 2670766ab985SMatthew G. Knepley } 2671766ab985SMatthew G. Knepley } 26729566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dm, cone[0], PETSC_TRUE, &closureSize, &closure)); 2673766ab985SMatthew G. Knepley /* Cells -- positive face is not included */ 2674766ab985SMatthew G. Knepley for (cl = 0; cl < 1; ++cl) { 2675766ab985SMatthew G. Knepley const PetscInt *support; 2676766ab985SMatthew G. Knepley PetscInt supportSize, s; 2677766ab985SMatthew G. Knepley 26789566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dm, cone[cl], &supportSize)); 267908401ef6SPierre Jolivet /* PetscCheck(supportSize == 2,PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Cohesive faces should separate two cells"); */ 26809566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(dm, cone[cl], &support)); 268148a46eb9SPierre Jolivet for (s = 0; s < supportSize; ++s) PetscCall(DMLabelSetValue(subpointMap, support[s], dim)); 2682766ab985SMatthew G. Knepley } 2683766ab985SMatthew G. Knepley } 26849566063dSJacob Faibussowitsch PetscCall(PetscFree2(pStart, pEnd)); 26853ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2686766ab985SMatthew G. Knepley } 2687766ab985SMatthew G. Knepley 2688d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexGetFaceOrientation(DM dm, PetscInt cell, PetscInt numCorners, PetscInt indices[], PetscInt oppositeVertex, PetscInt origVertices[], PetscInt faceVertices[], PetscBool *posOriented) 2689d71ae5a4SJacob Faibussowitsch { 269082f516ccSBarry Smith MPI_Comm comm; 2691e6ccafaeSMatthew G Knepley PetscBool posOrient = PETSC_FALSE; 2692e6ccafaeSMatthew G Knepley const PetscInt debug = 0; 2693e6ccafaeSMatthew G Knepley PetscInt cellDim, faceSize, f; 2694e6ccafaeSMatthew G Knepley 269582f516ccSBarry Smith PetscFunctionBegin; 26969566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)dm, &comm)); 26979566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &cellDim)); 269863a3b9bcSJacob Faibussowitsch if (debug) PetscCall(PetscPrintf(comm, "cellDim: %" PetscInt_FMT " numCorners: %" PetscInt_FMT "\n", cellDim, numCorners)); 2699e6ccafaeSMatthew G Knepley 2700ddeab2a6SMatthew G. Knepley if (cellDim == 1 && numCorners == 2) { 2701ddeab2a6SMatthew G. Knepley /* Triangle */ 2702e6ccafaeSMatthew G Knepley faceSize = numCorners - 1; 2703e6ccafaeSMatthew G Knepley posOrient = !(oppositeVertex % 2) ? PETSC_TRUE : PETSC_FALSE; 2704ddeab2a6SMatthew G. Knepley } else if (cellDim == 2 && numCorners == 3) { 2705ddeab2a6SMatthew G. Knepley /* Triangle */ 2706ddeab2a6SMatthew G. Knepley faceSize = numCorners - 1; 2707ddeab2a6SMatthew G. Knepley posOrient = !(oppositeVertex % 2) ? PETSC_TRUE : PETSC_FALSE; 2708ddeab2a6SMatthew G. Knepley } else if (cellDim == 3 && numCorners == 4) { 2709ddeab2a6SMatthew G. Knepley /* Tetrahedron */ 2710ddeab2a6SMatthew G. Knepley faceSize = numCorners - 1; 2711ddeab2a6SMatthew G. Knepley posOrient = (oppositeVertex % 2) ? PETSC_TRUE : PETSC_FALSE; 2712e6ccafaeSMatthew G Knepley } else if (cellDim == 1 && numCorners == 3) { 2713e6ccafaeSMatthew G Knepley /* Quadratic line */ 2714e6ccafaeSMatthew G Knepley faceSize = 1; 2715e6ccafaeSMatthew G Knepley posOrient = PETSC_TRUE; 2716e6ccafaeSMatthew G Knepley } else if (cellDim == 2 && numCorners == 4) { 2717e6ccafaeSMatthew G Knepley /* Quads */ 2718e6ccafaeSMatthew G Knepley faceSize = 2; 2719e6ccafaeSMatthew G Knepley if ((indices[1] > indices[0]) && (indices[1] - indices[0] == 1)) { 2720e6ccafaeSMatthew G Knepley posOrient = PETSC_TRUE; 2721e6ccafaeSMatthew G Knepley } else if ((indices[0] == 3) && (indices[1] == 0)) { 2722e6ccafaeSMatthew G Knepley posOrient = PETSC_TRUE; 2723e6ccafaeSMatthew G Knepley } else { 2724e6ccafaeSMatthew G Knepley if (((indices[0] > indices[1]) && (indices[0] - indices[1] == 1)) || ((indices[0] == 0) && (indices[1] == 3))) { 2725e6ccafaeSMatthew G Knepley posOrient = PETSC_FALSE; 2726e6ccafaeSMatthew G Knepley } else SETERRQ(comm, PETSC_ERR_ARG_WRONG, "Invalid quad crossedge"); 2727e6ccafaeSMatthew G Knepley } 2728e6ccafaeSMatthew G Knepley } else if (cellDim == 2 && numCorners == 6) { 2729e6ccafaeSMatthew G Knepley /* Quadratic triangle (I hate this) */ 2730e6ccafaeSMatthew G Knepley /* Edges are determined by the first 2 vertices (corners of edges) */ 2731e6ccafaeSMatthew G Knepley const PetscInt faceSizeTri = 3; 2732e6ccafaeSMatthew G Knepley PetscInt sortedIndices[3], i, iFace; 2733e6ccafaeSMatthew G Knepley PetscBool found = PETSC_FALSE; 2734e6ccafaeSMatthew G Knepley PetscInt faceVerticesTriSorted[9] = { 2735e6ccafaeSMatthew G Knepley 0, 3, 4, /* bottom */ 2736e6ccafaeSMatthew G Knepley 1, 4, 5, /* right */ 2737e6ccafaeSMatthew G Knepley 2, 3, 5, /* left */ 2738e6ccafaeSMatthew G Knepley }; 2739e6ccafaeSMatthew G Knepley PetscInt faceVerticesTri[9] = { 2740e6ccafaeSMatthew G Knepley 0, 3, 4, /* bottom */ 2741e6ccafaeSMatthew G Knepley 1, 4, 5, /* right */ 2742e6ccafaeSMatthew G Knepley 2, 5, 3, /* left */ 2743e6ccafaeSMatthew G Knepley }; 2744e6ccafaeSMatthew G Knepley 2745e6ccafaeSMatthew G Knepley for (i = 0; i < faceSizeTri; ++i) sortedIndices[i] = indices[i]; 27469566063dSJacob Faibussowitsch PetscCall(PetscSortInt(faceSizeTri, sortedIndices)); 2747e6ccafaeSMatthew G Knepley for (iFace = 0; iFace < 3; ++iFace) { 2748e6ccafaeSMatthew G Knepley const PetscInt ii = iFace * faceSizeTri; 2749e6ccafaeSMatthew G Knepley PetscInt fVertex, cVertex; 2750e6ccafaeSMatthew G Knepley 27519371c9d4SSatish Balay if ((sortedIndices[0] == faceVerticesTriSorted[ii + 0]) && (sortedIndices[1] == faceVerticesTriSorted[ii + 1])) { 2752e6ccafaeSMatthew G Knepley for (fVertex = 0; fVertex < faceSizeTri; ++fVertex) { 2753e6ccafaeSMatthew G Knepley for (cVertex = 0; cVertex < faceSizeTri; ++cVertex) { 2754e6ccafaeSMatthew G Knepley if (indices[cVertex] == faceVerticesTri[ii + fVertex]) { 2755e6ccafaeSMatthew G Knepley faceVertices[fVertex] = origVertices[cVertex]; 2756e6ccafaeSMatthew G Knepley break; 2757e6ccafaeSMatthew G Knepley } 2758e6ccafaeSMatthew G Knepley } 2759e6ccafaeSMatthew G Knepley } 2760e6ccafaeSMatthew G Knepley found = PETSC_TRUE; 2761e6ccafaeSMatthew G Knepley break; 2762e6ccafaeSMatthew G Knepley } 2763e6ccafaeSMatthew G Knepley } 276428b400f6SJacob Faibussowitsch PetscCheck(found, comm, PETSC_ERR_ARG_WRONG, "Invalid tri crossface"); 2765e6ccafaeSMatthew G Knepley if (posOriented) *posOriented = PETSC_TRUE; 27663ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2767e6ccafaeSMatthew G Knepley } else if (cellDim == 2 && numCorners == 9) { 2768e6ccafaeSMatthew G Knepley /* Quadratic quad (I hate this) */ 2769e6ccafaeSMatthew G Knepley /* Edges are determined by the first 2 vertices (corners of edges) */ 2770e6ccafaeSMatthew G Knepley const PetscInt faceSizeQuad = 3; 2771e6ccafaeSMatthew G Knepley PetscInt sortedIndices[3], i, iFace; 2772e6ccafaeSMatthew G Knepley PetscBool found = PETSC_FALSE; 2773e6ccafaeSMatthew G Knepley PetscInt faceVerticesQuadSorted[12] = { 2774e6ccafaeSMatthew G Knepley 0, 1, 4, /* bottom */ 2775e6ccafaeSMatthew G Knepley 1, 2, 5, /* right */ 2776e6ccafaeSMatthew G Knepley 2, 3, 6, /* top */ 2777e6ccafaeSMatthew G Knepley 0, 3, 7, /* left */ 2778e6ccafaeSMatthew G Knepley }; 2779e6ccafaeSMatthew G Knepley PetscInt faceVerticesQuad[12] = { 2780e6ccafaeSMatthew G Knepley 0, 1, 4, /* bottom */ 2781e6ccafaeSMatthew G Knepley 1, 2, 5, /* right */ 2782e6ccafaeSMatthew G Knepley 2, 3, 6, /* top */ 2783e6ccafaeSMatthew G Knepley 3, 0, 7, /* left */ 2784e6ccafaeSMatthew G Knepley }; 2785e6ccafaeSMatthew G Knepley 2786e6ccafaeSMatthew G Knepley for (i = 0; i < faceSizeQuad; ++i) sortedIndices[i] = indices[i]; 27879566063dSJacob Faibussowitsch PetscCall(PetscSortInt(faceSizeQuad, sortedIndices)); 2788e6ccafaeSMatthew G Knepley for (iFace = 0; iFace < 4; ++iFace) { 2789e6ccafaeSMatthew G Knepley const PetscInt ii = iFace * faceSizeQuad; 2790e6ccafaeSMatthew G Knepley PetscInt fVertex, cVertex; 2791e6ccafaeSMatthew G Knepley 27929371c9d4SSatish Balay if ((sortedIndices[0] == faceVerticesQuadSorted[ii + 0]) && (sortedIndices[1] == faceVerticesQuadSorted[ii + 1])) { 2793e6ccafaeSMatthew G Knepley for (fVertex = 0; fVertex < faceSizeQuad; ++fVertex) { 2794e6ccafaeSMatthew G Knepley for (cVertex = 0; cVertex < faceSizeQuad; ++cVertex) { 2795e6ccafaeSMatthew G Knepley if (indices[cVertex] == faceVerticesQuad[ii + fVertex]) { 2796e6ccafaeSMatthew G Knepley faceVertices[fVertex] = origVertices[cVertex]; 2797e6ccafaeSMatthew G Knepley break; 2798e6ccafaeSMatthew G Knepley } 2799e6ccafaeSMatthew G Knepley } 2800e6ccafaeSMatthew G Knepley } 2801e6ccafaeSMatthew G Knepley found = PETSC_TRUE; 2802e6ccafaeSMatthew G Knepley break; 2803e6ccafaeSMatthew G Knepley } 2804e6ccafaeSMatthew G Knepley } 280528b400f6SJacob Faibussowitsch PetscCheck(found, comm, PETSC_ERR_ARG_WRONG, "Invalid quad crossface"); 2806e6ccafaeSMatthew G Knepley if (posOriented) *posOriented = PETSC_TRUE; 28073ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2808e6ccafaeSMatthew G Knepley } else if (cellDim == 3 && numCorners == 8) { 2809e6ccafaeSMatthew G Knepley /* Hexes 2810e6ccafaeSMatthew G Knepley A hex is two oriented quads with the normal of the first 2811e6ccafaeSMatthew G Knepley pointing up at the second. 2812e6ccafaeSMatthew G Knepley 2813e6ccafaeSMatthew G Knepley 7---6 2814e6ccafaeSMatthew G Knepley /| /| 2815e6ccafaeSMatthew G Knepley 4---5 | 2816ddeab2a6SMatthew G. Knepley | 1-|-2 2817e6ccafaeSMatthew G Knepley |/ |/ 2818ddeab2a6SMatthew G. Knepley 0---3 2819e6ccafaeSMatthew G Knepley 2820e6ccafaeSMatthew G Knepley Faces are determined by the first 4 vertices (corners of faces) */ 2821e6ccafaeSMatthew G Knepley const PetscInt faceSizeHex = 4; 2822e6ccafaeSMatthew G Knepley PetscInt sortedIndices[4], i, iFace; 2823e6ccafaeSMatthew G Knepley PetscBool found = PETSC_FALSE; 2824e6ccafaeSMatthew G Knepley PetscInt faceVerticesHexSorted[24] = { 2825e6ccafaeSMatthew G Knepley 0, 1, 2, 3, /* bottom */ 2826e6ccafaeSMatthew G Knepley 4, 5, 6, 7, /* top */ 2827ddeab2a6SMatthew G. Knepley 0, 3, 4, 5, /* front */ 2828ddeab2a6SMatthew G. Knepley 2, 3, 5, 6, /* right */ 2829ddeab2a6SMatthew G. Knepley 1, 2, 6, 7, /* back */ 2830ddeab2a6SMatthew G. Knepley 0, 1, 4, 7, /* left */ 2831e6ccafaeSMatthew G Knepley }; 2832e6ccafaeSMatthew G Knepley PetscInt faceVerticesHex[24] = { 2833ddeab2a6SMatthew G. Knepley 1, 2, 3, 0, /* bottom */ 2834e6ccafaeSMatthew G Knepley 4, 5, 6, 7, /* top */ 2835ddeab2a6SMatthew G. Knepley 0, 3, 5, 4, /* front */ 2836ddeab2a6SMatthew G. Knepley 3, 2, 6, 5, /* right */ 2837ddeab2a6SMatthew G. Knepley 2, 1, 7, 6, /* back */ 2838ddeab2a6SMatthew G. Knepley 1, 0, 4, 7, /* left */ 2839e6ccafaeSMatthew G Knepley }; 2840e6ccafaeSMatthew G Knepley 2841e6ccafaeSMatthew G Knepley for (i = 0; i < faceSizeHex; ++i) sortedIndices[i] = indices[i]; 28429566063dSJacob Faibussowitsch PetscCall(PetscSortInt(faceSizeHex, sortedIndices)); 2843e6ccafaeSMatthew G Knepley for (iFace = 0; iFace < 6; ++iFace) { 2844e6ccafaeSMatthew G Knepley const PetscInt ii = iFace * faceSizeHex; 2845e6ccafaeSMatthew G Knepley PetscInt fVertex, cVertex; 2846e6ccafaeSMatthew G Knepley 28479371c9d4SSatish Balay if ((sortedIndices[0] == faceVerticesHexSorted[ii + 0]) && (sortedIndices[1] == faceVerticesHexSorted[ii + 1]) && (sortedIndices[2] == faceVerticesHexSorted[ii + 2]) && (sortedIndices[3] == faceVerticesHexSorted[ii + 3])) { 2848e6ccafaeSMatthew G Knepley for (fVertex = 0; fVertex < faceSizeHex; ++fVertex) { 2849e6ccafaeSMatthew G Knepley for (cVertex = 0; cVertex < faceSizeHex; ++cVertex) { 2850e6ccafaeSMatthew G Knepley if (indices[cVertex] == faceVerticesHex[ii + fVertex]) { 2851e6ccafaeSMatthew G Knepley faceVertices[fVertex] = origVertices[cVertex]; 2852e6ccafaeSMatthew G Knepley break; 2853e6ccafaeSMatthew G Knepley } 2854e6ccafaeSMatthew G Knepley } 2855e6ccafaeSMatthew G Knepley } 2856e6ccafaeSMatthew G Knepley found = PETSC_TRUE; 2857e6ccafaeSMatthew G Knepley break; 2858e6ccafaeSMatthew G Knepley } 2859e6ccafaeSMatthew G Knepley } 286028b400f6SJacob Faibussowitsch PetscCheck(found, comm, PETSC_ERR_ARG_WRONG, "Invalid hex crossface"); 2861e6ccafaeSMatthew G Knepley if (posOriented) *posOriented = PETSC_TRUE; 28623ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2863e6ccafaeSMatthew G Knepley } else if (cellDim == 3 && numCorners == 10) { 2864e6ccafaeSMatthew G Knepley /* Quadratic tet */ 2865e6ccafaeSMatthew G Knepley /* Faces are determined by the first 3 vertices (corners of faces) */ 2866e6ccafaeSMatthew G Knepley const PetscInt faceSizeTet = 6; 2867e6ccafaeSMatthew G Knepley PetscInt sortedIndices[6], i, iFace; 2868e6ccafaeSMatthew G Knepley PetscBool found = PETSC_FALSE; 2869e6ccafaeSMatthew G Knepley PetscInt faceVerticesTetSorted[24] = { 2870e6ccafaeSMatthew G Knepley 0, 1, 2, 6, 7, 8, /* bottom */ 2871e6ccafaeSMatthew G Knepley 0, 3, 4, 6, 7, 9, /* front */ 2872e6ccafaeSMatthew G Knepley 1, 4, 5, 7, 8, 9, /* right */ 2873e6ccafaeSMatthew G Knepley 2, 3, 5, 6, 8, 9, /* left */ 2874e6ccafaeSMatthew G Knepley }; 2875e6ccafaeSMatthew G Knepley PetscInt faceVerticesTet[24] = { 2876e6ccafaeSMatthew G Knepley 0, 1, 2, 6, 7, 8, /* bottom */ 2877e6ccafaeSMatthew G Knepley 0, 4, 3, 6, 7, 9, /* front */ 2878e6ccafaeSMatthew G Knepley 1, 5, 4, 7, 8, 9, /* right */ 2879e6ccafaeSMatthew G Knepley 2, 3, 5, 8, 6, 9, /* left */ 2880e6ccafaeSMatthew G Knepley }; 2881e6ccafaeSMatthew G Knepley 2882e6ccafaeSMatthew G Knepley for (i = 0; i < faceSizeTet; ++i) sortedIndices[i] = indices[i]; 28839566063dSJacob Faibussowitsch PetscCall(PetscSortInt(faceSizeTet, sortedIndices)); 2884e6ccafaeSMatthew G Knepley for (iFace = 0; iFace < 4; ++iFace) { 2885e6ccafaeSMatthew G Knepley const PetscInt ii = iFace * faceSizeTet; 2886e6ccafaeSMatthew G Knepley PetscInt fVertex, cVertex; 2887e6ccafaeSMatthew G Knepley 28889371c9d4SSatish Balay if ((sortedIndices[0] == faceVerticesTetSorted[ii + 0]) && (sortedIndices[1] == faceVerticesTetSorted[ii + 1]) && (sortedIndices[2] == faceVerticesTetSorted[ii + 2]) && (sortedIndices[3] == faceVerticesTetSorted[ii + 3])) { 2889e6ccafaeSMatthew G Knepley for (fVertex = 0; fVertex < faceSizeTet; ++fVertex) { 2890e6ccafaeSMatthew G Knepley for (cVertex = 0; cVertex < faceSizeTet; ++cVertex) { 2891e6ccafaeSMatthew G Knepley if (indices[cVertex] == faceVerticesTet[ii + fVertex]) { 2892e6ccafaeSMatthew G Knepley faceVertices[fVertex] = origVertices[cVertex]; 2893e6ccafaeSMatthew G Knepley break; 2894e6ccafaeSMatthew G Knepley } 2895e6ccafaeSMatthew G Knepley } 2896e6ccafaeSMatthew G Knepley } 2897e6ccafaeSMatthew G Knepley found = PETSC_TRUE; 2898e6ccafaeSMatthew G Knepley break; 2899e6ccafaeSMatthew G Knepley } 2900e6ccafaeSMatthew G Knepley } 290128b400f6SJacob Faibussowitsch PetscCheck(found, comm, PETSC_ERR_ARG_WRONG, "Invalid tet crossface"); 2902e6ccafaeSMatthew G Knepley if (posOriented) *posOriented = PETSC_TRUE; 29033ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2904e6ccafaeSMatthew G Knepley } else if (cellDim == 3 && numCorners == 27) { 2905e6ccafaeSMatthew G Knepley /* Quadratic hexes (I hate this) 2906e6ccafaeSMatthew G Knepley A hex is two oriented quads with the normal of the first 2907e6ccafaeSMatthew G Knepley pointing up at the second. 2908e6ccafaeSMatthew G Knepley 2909e6ccafaeSMatthew G Knepley 7---6 2910e6ccafaeSMatthew G Knepley /| /| 2911e6ccafaeSMatthew G Knepley 4---5 | 2912e6ccafaeSMatthew G Knepley | 3-|-2 2913e6ccafaeSMatthew G Knepley |/ |/ 2914e6ccafaeSMatthew G Knepley 0---1 2915e6ccafaeSMatthew G Knepley 2916e6ccafaeSMatthew G Knepley Faces are determined by the first 4 vertices (corners of faces) */ 2917e6ccafaeSMatthew G Knepley const PetscInt faceSizeQuadHex = 9; 2918e6ccafaeSMatthew G Knepley PetscInt sortedIndices[9], i, iFace; 2919e6ccafaeSMatthew G Knepley PetscBool found = PETSC_FALSE; 2920e6ccafaeSMatthew G Knepley PetscInt faceVerticesQuadHexSorted[54] = { 2921e6ccafaeSMatthew G Knepley 0, 1, 2, 3, 8, 9, 10, 11, 24, /* bottom */ 2922e6ccafaeSMatthew G Knepley 4, 5, 6, 7, 12, 13, 14, 15, 25, /* top */ 2923e6ccafaeSMatthew G Knepley 0, 1, 4, 5, 8, 12, 16, 17, 22, /* front */ 2924e6ccafaeSMatthew G Knepley 1, 2, 5, 6, 9, 13, 17, 18, 21, /* right */ 2925e6ccafaeSMatthew G Knepley 2, 3, 6, 7, 10, 14, 18, 19, 23, /* back */ 2926e6ccafaeSMatthew G Knepley 0, 3, 4, 7, 11, 15, 16, 19, 20, /* left */ 2927e6ccafaeSMatthew G Knepley }; 2928e6ccafaeSMatthew G Knepley PetscInt faceVerticesQuadHex[54] = { 2929e6ccafaeSMatthew G Knepley 3, 2, 1, 0, 10, 9, 8, 11, 24, /* bottom */ 2930e6ccafaeSMatthew G Knepley 4, 5, 6, 7, 12, 13, 14, 15, 25, /* top */ 2931e6ccafaeSMatthew G Knepley 0, 1, 5, 4, 8, 17, 12, 16, 22, /* front */ 2932e6ccafaeSMatthew G Knepley 1, 2, 6, 5, 9, 18, 13, 17, 21, /* right */ 2933e6ccafaeSMatthew G Knepley 2, 3, 7, 6, 10, 19, 14, 18, 23, /* back */ 2934e6ccafaeSMatthew G Knepley 3, 0, 4, 7, 11, 16, 15, 19, 20 /* left */ 2935e6ccafaeSMatthew G Knepley }; 2936e6ccafaeSMatthew G Knepley 2937e6ccafaeSMatthew G Knepley for (i = 0; i < faceSizeQuadHex; ++i) sortedIndices[i] = indices[i]; 29389566063dSJacob Faibussowitsch PetscCall(PetscSortInt(faceSizeQuadHex, sortedIndices)); 2939e6ccafaeSMatthew G Knepley for (iFace = 0; iFace < 6; ++iFace) { 2940e6ccafaeSMatthew G Knepley const PetscInt ii = iFace * faceSizeQuadHex; 2941e6ccafaeSMatthew G Knepley PetscInt fVertex, cVertex; 2942e6ccafaeSMatthew G Knepley 29439371c9d4SSatish Balay if ((sortedIndices[0] == faceVerticesQuadHexSorted[ii + 0]) && (sortedIndices[1] == faceVerticesQuadHexSorted[ii + 1]) && (sortedIndices[2] == faceVerticesQuadHexSorted[ii + 2]) && (sortedIndices[3] == faceVerticesQuadHexSorted[ii + 3])) { 2944e6ccafaeSMatthew G Knepley for (fVertex = 0; fVertex < faceSizeQuadHex; ++fVertex) { 2945e6ccafaeSMatthew G Knepley for (cVertex = 0; cVertex < faceSizeQuadHex; ++cVertex) { 2946e6ccafaeSMatthew G Knepley if (indices[cVertex] == faceVerticesQuadHex[ii + fVertex]) { 2947e6ccafaeSMatthew G Knepley faceVertices[fVertex] = origVertices[cVertex]; 2948e6ccafaeSMatthew G Knepley break; 2949e6ccafaeSMatthew G Knepley } 2950e6ccafaeSMatthew G Knepley } 2951e6ccafaeSMatthew G Knepley } 2952e6ccafaeSMatthew G Knepley found = PETSC_TRUE; 2953e6ccafaeSMatthew G Knepley break; 2954e6ccafaeSMatthew G Knepley } 2955e6ccafaeSMatthew G Knepley } 295628b400f6SJacob Faibussowitsch PetscCheck(found, comm, PETSC_ERR_ARG_WRONG, "Invalid hex crossface"); 2957e6ccafaeSMatthew G Knepley if (posOriented) *posOriented = PETSC_TRUE; 29583ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2959e6ccafaeSMatthew G Knepley } else SETERRQ(comm, PETSC_ERR_ARG_WRONG, "Unknown cell type for faceOrientation()."); 2960e6ccafaeSMatthew G Knepley if (!posOrient) { 29619566063dSJacob Faibussowitsch if (debug) PetscCall(PetscPrintf(comm, " Reversing initial face orientation\n")); 2962e6ccafaeSMatthew G Knepley for (f = 0; f < faceSize; ++f) faceVertices[f] = origVertices[faceSize - 1 - f]; 2963e6ccafaeSMatthew G Knepley } else { 29649566063dSJacob Faibussowitsch if (debug) PetscCall(PetscPrintf(comm, " Keeping initial face orientation\n")); 2965e6ccafaeSMatthew G Knepley for (f = 0; f < faceSize; ++f) faceVertices[f] = origVertices[f]; 2966e6ccafaeSMatthew G Knepley } 2967e6ccafaeSMatthew G Knepley if (posOriented) *posOriented = posOrient; 29683ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2969e6ccafaeSMatthew G Knepley } 2970e6ccafaeSMatthew G Knepley 2971c08575a3SMatthew G. Knepley /*@ 2972c08575a3SMatthew G. Knepley DMPlexGetOrientedFace - Given a cell and a face, as a set of vertices, return the oriented face, as a set of vertices, 2973c08575a3SMatthew G. Knepley in faceVertices. The orientation is such that the face normal points out of the cell 2974c08575a3SMatthew G. Knepley 297520f4b53cSBarry Smith Not Collective 2976c08575a3SMatthew G. Knepley 2977c08575a3SMatthew G. Knepley Input Parameters: 2978c08575a3SMatthew G. Knepley + dm - The original mesh 2979c08575a3SMatthew G. Knepley . cell - The cell mesh point 2980c08575a3SMatthew G. Knepley . faceSize - The number of vertices on the face 2981c08575a3SMatthew G. Knepley . face - The face vertices 2982c08575a3SMatthew G. Knepley . numCorners - The number of vertices on the cell 2983c08575a3SMatthew G. Knepley . indices - Local numbering of face vertices in cell cone 2984c08575a3SMatthew G. Knepley - origVertices - Original face vertices 2985c08575a3SMatthew G. Knepley 2986d8d19677SJose E. Roman Output Parameters: 2987c08575a3SMatthew G. Knepley + faceVertices - The face vertices properly oriented 298820f4b53cSBarry Smith - posOriented - `PETSC_TRUE` if the face was oriented with outward normal 2989c08575a3SMatthew G. Knepley 2990c08575a3SMatthew G. Knepley Level: developer 2991c08575a3SMatthew G. Knepley 29921cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexGetCone()` 2993c08575a3SMatthew G. Knepley @*/ 2994d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexGetOrientedFace(DM dm, PetscInt cell, PetscInt faceSize, const PetscInt face[], PetscInt numCorners, PetscInt indices[], PetscInt origVertices[], PetscInt faceVertices[], PetscBool *posOriented) 2995d71ae5a4SJacob Faibussowitsch { 29960298fd71SBarry Smith const PetscInt *cone = NULL; 2997e6ccafaeSMatthew G Knepley PetscInt coneSize, v, f, v2; 2998e6ccafaeSMatthew G Knepley PetscInt oppositeVertex = -1; 2999e6ccafaeSMatthew G Knepley 3000e6ccafaeSMatthew G Knepley PetscFunctionBegin; 30019566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, cell, &coneSize)); 30029566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, cell, &cone)); 3003e6ccafaeSMatthew G Knepley for (v = 0, v2 = 0; v < coneSize; ++v) { 3004e6ccafaeSMatthew G Knepley PetscBool found = PETSC_FALSE; 3005e6ccafaeSMatthew G Knepley 3006e6ccafaeSMatthew G Knepley for (f = 0; f < faceSize; ++f) { 3007e6ccafaeSMatthew G Knepley if (face[f] == cone[v]) { 30089371c9d4SSatish Balay found = PETSC_TRUE; 30099371c9d4SSatish Balay break; 3010e6ccafaeSMatthew G Knepley } 3011e6ccafaeSMatthew G Knepley } 3012e6ccafaeSMatthew G Knepley if (found) { 3013e6ccafaeSMatthew G Knepley indices[v2] = v; 3014e6ccafaeSMatthew G Knepley origVertices[v2] = cone[v]; 3015e6ccafaeSMatthew G Knepley ++v2; 3016e6ccafaeSMatthew G Knepley } else { 3017e6ccafaeSMatthew G Knepley oppositeVertex = v; 3018e6ccafaeSMatthew G Knepley } 3019e6ccafaeSMatthew G Knepley } 30209566063dSJacob Faibussowitsch PetscCall(DMPlexGetFaceOrientation(dm, cell, numCorners, indices, oppositeVertex, origVertices, faceVertices, posOriented)); 30213ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3022e6ccafaeSMatthew G Knepley } 3023e6ccafaeSMatthew G Knepley 3024e6ccafaeSMatthew G Knepley /* 3025cd0c2139SMatthew G Knepley DMPlexInsertFace_Internal - Puts a face into the mesh 3026e6ccafaeSMatthew G Knepley 302720f4b53cSBarry Smith Not Collective 3028e6ccafaeSMatthew G Knepley 3029e6ccafaeSMatthew G Knepley Input Parameters: 303020f4b53cSBarry Smith + dm - The `DMPLEX` 3031e6ccafaeSMatthew G Knepley . numFaceVertex - The number of vertices in the face 303220f4b53cSBarry Smith . faceVertices - The vertices in the face for `dm` 3033e6ccafaeSMatthew G Knepley . subfaceVertices - The vertices in the face for subdm 303420f4b53cSBarry Smith . numCorners - The number of vertices in the `cell` 303520f4b53cSBarry Smith . cell - A cell in `dm` containing the face 3036e6ccafaeSMatthew G Knepley . subcell - A cell in subdm containing the face 3037e6ccafaeSMatthew G Knepley . firstFace - First face in the mesh 3038e6ccafaeSMatthew G Knepley - newFacePoint - Next face in the mesh 3039e6ccafaeSMatthew G Knepley 30402fe279fdSBarry Smith Output Parameter: 3041e6ccafaeSMatthew G Knepley . newFacePoint - Contains next face point number on input, updated on output 3042e6ccafaeSMatthew G Knepley 3043e6ccafaeSMatthew G Knepley Level: developer 3044e6ccafaeSMatthew G Knepley */ 3045d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexInsertFace_Internal(DM dm, DM subdm, PetscInt numFaceVertices, const PetscInt faceVertices[], const PetscInt subfaceVertices[], PetscInt numCorners, PetscInt cell, PetscInt subcell, PetscInt firstFace, PetscInt *newFacePoint) 3046d71ae5a4SJacob Faibussowitsch { 304782f516ccSBarry Smith MPI_Comm comm; 3048e6ccafaeSMatthew G Knepley DM_Plex *submesh = (DM_Plex *)subdm->data; 3049e6ccafaeSMatthew G Knepley const PetscInt *faces; 3050e6ccafaeSMatthew G Knepley PetscInt numFaces, coneSize; 3051e6ccafaeSMatthew G Knepley 3052e6ccafaeSMatthew G Knepley PetscFunctionBegin; 30539566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)dm, &comm)); 30549566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(subdm, subcell, &coneSize)); 305563a3b9bcSJacob Faibussowitsch PetscCheck(coneSize == 1, comm, PETSC_ERR_ARG_OUTOFRANGE, "Cone size of cell %" PetscInt_FMT " is %" PetscInt_FMT " != 1", cell, coneSize); 3056e6ccafaeSMatthew G Knepley #if 0 3057e6ccafaeSMatthew G Knepley /* Cannot use this because support() has not been constructed yet */ 30589566063dSJacob Faibussowitsch PetscCall(DMPlexGetJoin(subdm, numFaceVertices, subfaceVertices, &numFaces, &faces)); 3059e6ccafaeSMatthew G Knepley #else 3060e6ccafaeSMatthew G Knepley { 3061e6ccafaeSMatthew G Knepley PetscInt f; 3062e6ccafaeSMatthew G Knepley 3063e6ccafaeSMatthew G Knepley numFaces = 0; 30649566063dSJacob Faibussowitsch PetscCall(DMGetWorkArray(subdm, 1, MPIU_INT, (void **)&faces)); 3065e6ccafaeSMatthew G Knepley for (f = firstFace; f < *newFacePoint; ++f) { 3066e6ccafaeSMatthew G Knepley PetscInt dof, off, d; 3067e6ccafaeSMatthew G Knepley 30689566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(submesh->coneSection, f, &dof)); 30699566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(submesh->coneSection, f, &off)); 3070e6ccafaeSMatthew G Knepley /* Yes, I know this is quadratic, but I expect the sizes to be <5 */ 3071e6ccafaeSMatthew G Knepley for (d = 0; d < dof; ++d) { 3072e6ccafaeSMatthew G Knepley const PetscInt p = submesh->cones[off + d]; 3073e6ccafaeSMatthew G Knepley PetscInt v; 3074e6ccafaeSMatthew G Knepley 3075e6ccafaeSMatthew G Knepley for (v = 0; v < numFaceVertices; ++v) { 3076e6ccafaeSMatthew G Knepley if (subfaceVertices[v] == p) break; 3077e6ccafaeSMatthew G Knepley } 3078e6ccafaeSMatthew G Knepley if (v == numFaceVertices) break; 3079e6ccafaeSMatthew G Knepley } 3080e6ccafaeSMatthew G Knepley if (d == dof) { 3081e6ccafaeSMatthew G Knepley numFaces = 1; 3082e6ccafaeSMatthew G Knepley ((PetscInt *)faces)[0] = f; 3083e6ccafaeSMatthew G Knepley } 3084e6ccafaeSMatthew G Knepley } 3085e6ccafaeSMatthew G Knepley } 3086e6ccafaeSMatthew G Knepley #endif 308763a3b9bcSJacob Faibussowitsch PetscCheck(numFaces <= 1, comm, PETSC_ERR_ARG_WRONG, "Vertex set had %" PetscInt_FMT " faces, not one", numFaces); 3088f7d195e4SLawrence Mitchell if (numFaces == 1) { 3089e6ccafaeSMatthew G Knepley /* Add the other cell neighbor for this face */ 30909566063dSJacob Faibussowitsch PetscCall(DMPlexSetCone(subdm, subcell, faces)); 3091e6ccafaeSMatthew G Knepley } else { 3092e6ccafaeSMatthew G Knepley PetscInt *indices, *origVertices, *orientedVertices, *orientedSubVertices, v, ov; 3093e6ccafaeSMatthew G Knepley PetscBool posOriented; 3094e6ccafaeSMatthew G Knepley 30959566063dSJacob Faibussowitsch PetscCall(DMGetWorkArray(subdm, 4 * numFaceVertices * sizeof(PetscInt), MPIU_INT, &orientedVertices)); 3096e6ccafaeSMatthew G Knepley origVertices = &orientedVertices[numFaceVertices]; 3097e6ccafaeSMatthew G Knepley indices = &orientedVertices[numFaceVertices * 2]; 3098e6ccafaeSMatthew G Knepley orientedSubVertices = &orientedVertices[numFaceVertices * 3]; 30999566063dSJacob Faibussowitsch PetscCall(DMPlexGetOrientedFace(dm, cell, numFaceVertices, faceVertices, numCorners, indices, origVertices, orientedVertices, &posOriented)); 3100e6ccafaeSMatthew G Knepley /* TODO: I know that routine should return a permutation, not the indices */ 3101e6ccafaeSMatthew G Knepley for (v = 0; v < numFaceVertices; ++v) { 3102e6ccafaeSMatthew G Knepley const PetscInt vertex = faceVertices[v], subvertex = subfaceVertices[v]; 3103e6ccafaeSMatthew G Knepley for (ov = 0; ov < numFaceVertices; ++ov) { 3104e6ccafaeSMatthew G Knepley if (orientedVertices[ov] == vertex) { 3105e6ccafaeSMatthew G Knepley orientedSubVertices[ov] = subvertex; 3106e6ccafaeSMatthew G Knepley break; 3107e6ccafaeSMatthew G Knepley } 3108e6ccafaeSMatthew G Knepley } 310963a3b9bcSJacob Faibussowitsch PetscCheck(ov != numFaceVertices, comm, PETSC_ERR_PLIB, "Could not find face vertex %" PetscInt_FMT " in orientated set", vertex); 3110e6ccafaeSMatthew G Knepley } 31119566063dSJacob Faibussowitsch PetscCall(DMPlexSetCone(subdm, *newFacePoint, orientedSubVertices)); 31129566063dSJacob Faibussowitsch PetscCall(DMPlexSetCone(subdm, subcell, newFacePoint)); 31139566063dSJacob Faibussowitsch PetscCall(DMRestoreWorkArray(subdm, 4 * numFaceVertices * sizeof(PetscInt), MPIU_INT, &orientedVertices)); 3114e6ccafaeSMatthew G Knepley ++(*newFacePoint); 3115e6ccafaeSMatthew G Knepley } 3116ef07cca7SMatthew G. Knepley #if 0 31179566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreJoin(subdm, numFaceVertices, subfaceVertices, &numFaces, &faces)); 3118ef07cca7SMatthew G. Knepley #else 31199566063dSJacob Faibussowitsch PetscCall(DMRestoreWorkArray(subdm, 1, MPIU_INT, (void **)&faces)); 3120ef07cca7SMatthew G. Knepley #endif 31213ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3122e6ccafaeSMatthew G Knepley } 3123e6ccafaeSMatthew G Knepley 3124d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexCreateSubmesh_Uninterpolated(DM dm, DMLabel vertexLabel, PetscInt value, DM subdm) 3125d71ae5a4SJacob Faibussowitsch { 312682f516ccSBarry Smith MPI_Comm comm; 312753156dfcSMatthew G. Knepley DMLabel subpointMap; 3128efa14ee0SMatthew G Knepley IS subvertexIS, subcellIS; 3129efa14ee0SMatthew G Knepley const PetscInt *subVertices, *subCells; 3130efa14ee0SMatthew G Knepley PetscInt numSubVertices, firstSubVertex, numSubCells; 3131fed694aaSMatthew G. Knepley PetscInt *subface, maxConeSize, numSubFaces = 0, firstSubFace, newFacePoint, nFV = 0; 3132efa14ee0SMatthew G Knepley PetscInt vStart, vEnd, c, f; 3133e6ccafaeSMatthew G Knepley 3134e6ccafaeSMatthew G Knepley PetscFunctionBegin; 31359566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)dm, &comm)); 3136efa14ee0SMatthew G Knepley /* Create subpointMap which marks the submesh */ 31379566063dSJacob Faibussowitsch PetscCall(DMLabelCreate(PETSC_COMM_SELF, "subpoint_map", &subpointMap)); 31389566063dSJacob Faibussowitsch PetscCall(DMPlexSetSubpointMap(subdm, subpointMap)); 31399566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&subpointMap)); 31409566063dSJacob Faibussowitsch if (vertexLabel) PetscCall(DMPlexMarkSubmesh_Uninterpolated(dm, vertexLabel, value, subpointMap, &numSubFaces, &nFV, subdm)); 3141efa14ee0SMatthew G Knepley /* Setup chart */ 31429566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumSize(subpointMap, 0, &numSubVertices)); 31439566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumSize(subpointMap, 2, &numSubCells)); 31449566063dSJacob Faibussowitsch PetscCall(DMPlexSetChart(subdm, 0, numSubCells + numSubFaces + numSubVertices)); 31459566063dSJacob Faibussowitsch PetscCall(DMPlexSetVTKCellHeight(subdm, 1)); 3146e6ccafaeSMatthew G Knepley /* Set cone sizes */ 3147e6ccafaeSMatthew G Knepley firstSubVertex = numSubCells; 3148efa14ee0SMatthew G Knepley firstSubFace = numSubCells + numSubVertices; 3149e6ccafaeSMatthew G Knepley newFacePoint = firstSubFace; 31509566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(subpointMap, 0, &subvertexIS)); 31519566063dSJacob Faibussowitsch if (subvertexIS) PetscCall(ISGetIndices(subvertexIS, &subVertices)); 31529566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(subpointMap, 2, &subcellIS)); 31539566063dSJacob Faibussowitsch if (subcellIS) PetscCall(ISGetIndices(subcellIS, &subCells)); 315448a46eb9SPierre Jolivet for (c = 0; c < numSubCells; ++c) PetscCall(DMPlexSetConeSize(subdm, c, 1)); 315548a46eb9SPierre Jolivet for (f = firstSubFace; f < firstSubFace + numSubFaces; ++f) PetscCall(DMPlexSetConeSize(subdm, f, nFV)); 31569566063dSJacob Faibussowitsch PetscCall(DMSetUp(subdm)); 3157e6ccafaeSMatthew G Knepley /* Create face cones */ 31589566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthStratum(dm, 0, &vStart, &vEnd)); 31599566063dSJacob Faibussowitsch PetscCall(DMPlexGetMaxSizes(dm, &maxConeSize, NULL)); 31609566063dSJacob Faibussowitsch PetscCall(DMGetWorkArray(subdm, maxConeSize, MPIU_INT, (void **)&subface)); 3161e6ccafaeSMatthew G Knepley for (c = 0; c < numSubCells; ++c) { 3162e6ccafaeSMatthew G Knepley const PetscInt cell = subCells[c]; 3163efa14ee0SMatthew G Knepley const PetscInt subcell = c; 31640298fd71SBarry Smith PetscInt *closure = NULL; 3165efa14ee0SMatthew G Knepley PetscInt closureSize, cl, numCorners = 0, faceSize = 0; 3166e6ccafaeSMatthew G Knepley 31679566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(dm, cell, PETSC_TRUE, &closureSize, &closure)); 3168efa14ee0SMatthew G Knepley for (cl = 0; cl < closureSize * 2; cl += 2) { 3169efa14ee0SMatthew G Knepley const PetscInt point = closure[cl]; 3170e6ccafaeSMatthew G Knepley PetscInt subVertex; 3171e6ccafaeSMatthew G Knepley 3172efa14ee0SMatthew G Knepley if ((point >= vStart) && (point < vEnd)) { 3173efa14ee0SMatthew G Knepley ++numCorners; 31749566063dSJacob Faibussowitsch PetscCall(PetscFindInt(point, numSubVertices, subVertices, &subVertex)); 3175efa14ee0SMatthew G Knepley if (subVertex >= 0) { 3176efa14ee0SMatthew G Knepley closure[faceSize] = point; 317765560c7fSMatthew G Knepley subface[faceSize] = firstSubVertex + subVertex; 3178e6ccafaeSMatthew G Knepley ++faceSize; 3179e6ccafaeSMatthew G Knepley } 3180e6ccafaeSMatthew G Knepley } 3181e6ccafaeSMatthew G Knepley } 318263a3b9bcSJacob Faibussowitsch PetscCheck(faceSize <= nFV, comm, PETSC_ERR_ARG_WRONG, "Invalid submesh: Too many vertices %" PetscInt_FMT " of an element on the surface", faceSize); 318348a46eb9SPierre Jolivet if (faceSize == nFV) PetscCall(DMPlexInsertFace_Internal(dm, subdm, faceSize, closure, subface, numCorners, cell, subcell, firstSubFace, &newFacePoint)); 31849566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dm, cell, PETSC_TRUE, &closureSize, &closure)); 3185e6ccafaeSMatthew G Knepley } 31869566063dSJacob Faibussowitsch PetscCall(DMRestoreWorkArray(subdm, maxConeSize, MPIU_INT, (void **)&subface)); 31879566063dSJacob Faibussowitsch PetscCall(DMPlexSymmetrize(subdm)); 31889566063dSJacob Faibussowitsch PetscCall(DMPlexStratify(subdm)); 3189e6ccafaeSMatthew G Knepley /* Build coordinates */ 3190efa14ee0SMatthew G Knepley { 3191efa14ee0SMatthew G Knepley PetscSection coordSection, subCoordSection; 3192efa14ee0SMatthew G Knepley Vec coordinates, subCoordinates; 3193efa14ee0SMatthew G Knepley PetscScalar *coords, *subCoords; 3194285d324eSMatthew G. Knepley PetscInt numComp, coordSize, v; 319524640c55SToby Isaac const char *name; 3196efa14ee0SMatthew G Knepley 31979566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateSection(dm, &coordSection)); 31989566063dSJacob Faibussowitsch PetscCall(DMGetCoordinatesLocal(dm, &coordinates)); 31999566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateSection(subdm, &subCoordSection)); 32009566063dSJacob Faibussowitsch PetscCall(PetscSectionSetNumFields(subCoordSection, 1)); 32019566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldComponents(coordSection, 0, &numComp)); 32029566063dSJacob Faibussowitsch PetscCall(PetscSectionSetFieldComponents(subCoordSection, 0, numComp)); 32039566063dSJacob Faibussowitsch PetscCall(PetscSectionSetChart(subCoordSection, firstSubVertex, firstSubVertex + numSubVertices)); 3204efa14ee0SMatthew G Knepley for (v = 0; v < numSubVertices; ++v) { 3205efa14ee0SMatthew G Knepley const PetscInt vertex = subVertices[v]; 3206efa14ee0SMatthew G Knepley const PetscInt subvertex = firstSubVertex + v; 3207efa14ee0SMatthew G Knepley PetscInt dof; 3208efa14ee0SMatthew G Knepley 32099566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(coordSection, vertex, &dof)); 32109566063dSJacob Faibussowitsch PetscCall(PetscSectionSetDof(subCoordSection, subvertex, dof)); 32119566063dSJacob Faibussowitsch PetscCall(PetscSectionSetFieldDof(subCoordSection, subvertex, 0, dof)); 3212e6ccafaeSMatthew G Knepley } 32139566063dSJacob Faibussowitsch PetscCall(PetscSectionSetUp(subCoordSection)); 32149566063dSJacob Faibussowitsch PetscCall(PetscSectionGetStorageSize(subCoordSection, &coordSize)); 32159566063dSJacob Faibussowitsch PetscCall(VecCreate(PETSC_COMM_SELF, &subCoordinates)); 32169566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)coordinates, &name)); 32179566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)subCoordinates, name)); 32189566063dSJacob Faibussowitsch PetscCall(VecSetSizes(subCoordinates, coordSize, PETSC_DETERMINE)); 32199566063dSJacob Faibussowitsch PetscCall(VecSetType(subCoordinates, VECSTANDARD)); 3220830e53efSMatthew G. Knepley if (coordSize) { 32219566063dSJacob Faibussowitsch PetscCall(VecGetArray(coordinates, &coords)); 32229566063dSJacob Faibussowitsch PetscCall(VecGetArray(subCoordinates, &subCoords)); 3223efa14ee0SMatthew G Knepley for (v = 0; v < numSubVertices; ++v) { 3224efa14ee0SMatthew G Knepley const PetscInt vertex = subVertices[v]; 3225efa14ee0SMatthew G Knepley const PetscInt subvertex = firstSubVertex + v; 3226efa14ee0SMatthew G Knepley PetscInt dof, off, sdof, soff, d; 3227e6ccafaeSMatthew G Knepley 32289566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(coordSection, vertex, &dof)); 32299566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(coordSection, vertex, &off)); 32309566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(subCoordSection, subvertex, &sdof)); 32319566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(subCoordSection, subvertex, &soff)); 323263a3b9bcSJacob Faibussowitsch PetscCheck(dof == sdof, comm, PETSC_ERR_PLIB, "Coordinate dimension %" PetscInt_FMT " on subvertex %" PetscInt_FMT ", vertex %" PetscInt_FMT " should be %" PetscInt_FMT, sdof, subvertex, vertex, dof); 3233e6ccafaeSMatthew G Knepley for (d = 0; d < dof; ++d) subCoords[soff + d] = coords[off + d]; 3234e6ccafaeSMatthew G Knepley } 32359566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(coordinates, &coords)); 32369566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(subCoordinates, &subCoords)); 32373b399e24SMatthew G. Knepley } 32389566063dSJacob Faibussowitsch PetscCall(DMSetCoordinatesLocal(subdm, subCoordinates)); 32399566063dSJacob Faibussowitsch PetscCall(VecDestroy(&subCoordinates)); 3240e6ccafaeSMatthew G Knepley } 3241efa14ee0SMatthew G Knepley /* Cleanup */ 32429566063dSJacob Faibussowitsch if (subvertexIS) PetscCall(ISRestoreIndices(subvertexIS, &subVertices)); 32439566063dSJacob Faibussowitsch PetscCall(ISDestroy(&subvertexIS)); 32449566063dSJacob Faibussowitsch if (subcellIS) PetscCall(ISRestoreIndices(subcellIS, &subCells)); 32459566063dSJacob Faibussowitsch PetscCall(ISDestroy(&subcellIS)); 32463ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3247e6ccafaeSMatthew G Knepley } 3248e6ccafaeSMatthew G Knepley 3249d5b43468SJose E. Roman /* TODO: Fix this to properly propagate up error conditions it may find */ 3250d71ae5a4SJacob Faibussowitsch static inline PetscInt DMPlexFilterPoint_Internal(PetscInt point, PetscInt firstSubPoint, PetscInt numSubPoints, const PetscInt subPoints[]) 3251d71ae5a4SJacob Faibussowitsch { 32523982b651SMatthew G. Knepley PetscInt subPoint; 32533982b651SMatthew G. Knepley PetscErrorCode ierr; 32543982b651SMatthew G. Knepley 32559371c9d4SSatish Balay ierr = PetscFindInt(point, numSubPoints, subPoints, &subPoint); 32569371c9d4SSatish Balay if (ierr) return -1; 32573982b651SMatthew G. Knepley return subPoint < 0 ? subPoint : firstSubPoint + subPoint; 32583982b651SMatthew G. Knepley } 32593982b651SMatthew G. Knepley 3260d5b43468SJose E. Roman /* TODO: Fix this to properly propagate up error conditions it may find */ 3261d71ae5a4SJacob Faibussowitsch static inline PetscInt DMPlexFilterPointPerm_Internal(PetscInt point, PetscInt firstSubPoint, PetscInt numSubPoints, const PetscInt subPoints[], const PetscInt subIndices[]) 3262d71ae5a4SJacob Faibussowitsch { 3263dd05d810SMatthew G. Knepley PetscInt subPoint; 3264dd05d810SMatthew G. Knepley PetscErrorCode ierr; 3265dd05d810SMatthew G. Knepley 3266dd05d810SMatthew G. Knepley ierr = PetscFindInt(point, numSubPoints, subPoints, &subPoint); 3267dd05d810SMatthew G. Knepley if (ierr) return -1; 3268dd05d810SMatthew G. Knepley return subPoint < 0 ? subPoint : firstSubPoint + (subIndices ? subIndices[subPoint] : subPoint); 3269dd05d810SMatthew G. Knepley } 3270dd05d810SMatthew G. Knepley 3271d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexFilterLabels_Internal(DM dm, const PetscInt numSubPoints[], const PetscInt *subpoints[], const PetscInt firstSubPoint[], DM subdm) 3272d71ae5a4SJacob Faibussowitsch { 3273695799ffSMatthew G. Knepley DMLabel depthLabel; 3274212103e5SMatthew Knepley PetscInt Nl, l, d; 3275212103e5SMatthew Knepley 3276212103e5SMatthew Knepley PetscFunctionBegin; 3277695799ffSMatthew G. Knepley // Reset depth label for fast lookup 3278695799ffSMatthew G. Knepley PetscCall(DMPlexGetDepthLabel(dm, &depthLabel)); 3279695799ffSMatthew G. Knepley PetscCall(DMLabelMakeAllInvalid_Internal(depthLabel)); 32809566063dSJacob Faibussowitsch PetscCall(DMGetNumLabels(dm, &Nl)); 3281212103e5SMatthew Knepley for (l = 0; l < Nl; ++l) { 3282212103e5SMatthew Knepley DMLabel label, newlabel; 3283212103e5SMatthew Knepley const char *lname; 3284d56405f8SMatthew G. Knepley PetscBool isDepth, isDim, isCelltype, isVTK; 3285212103e5SMatthew Knepley IS valueIS; 3286212103e5SMatthew Knepley const PetscInt *values; 3287212103e5SMatthew Knepley PetscInt Nv, v; 3288212103e5SMatthew Knepley 32899566063dSJacob Faibussowitsch PetscCall(DMGetLabelName(dm, l, &lname)); 32909566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(lname, "depth", &isDepth)); 32919566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(lname, "dim", &isDim)); 32929566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(lname, "celltype", &isCelltype)); 32939566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(lname, "vtk", &isVTK)); 3294d56405f8SMatthew G. Knepley if (isDepth || isDim || isCelltype || isVTK) continue; 32959566063dSJacob Faibussowitsch PetscCall(DMCreateLabel(subdm, lname)); 32969566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, lname, &label)); 32979566063dSJacob Faibussowitsch PetscCall(DMGetLabel(subdm, lname, &newlabel)); 32989566063dSJacob Faibussowitsch PetscCall(DMLabelGetDefaultValue(label, &v)); 32999566063dSJacob Faibussowitsch PetscCall(DMLabelSetDefaultValue(newlabel, v)); 33009566063dSJacob Faibussowitsch PetscCall(DMLabelGetValueIS(label, &valueIS)); 33019566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(valueIS, &Nv)); 33029566063dSJacob Faibussowitsch PetscCall(ISGetIndices(valueIS, &values)); 3303212103e5SMatthew Knepley for (v = 0; v < Nv; ++v) { 3304212103e5SMatthew Knepley IS pointIS; 3305212103e5SMatthew Knepley const PetscInt *points; 3306212103e5SMatthew Knepley PetscInt Np, p; 3307212103e5SMatthew Knepley 33089566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(label, values[v], &pointIS)); 33099566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(pointIS, &Np)); 33109566063dSJacob Faibussowitsch PetscCall(ISGetIndices(pointIS, &points)); 3311212103e5SMatthew Knepley for (p = 0; p < Np; ++p) { 3312212103e5SMatthew Knepley const PetscInt point = points[p]; 3313212103e5SMatthew Knepley PetscInt subp; 3314212103e5SMatthew Knepley 33159566063dSJacob Faibussowitsch PetscCall(DMPlexGetPointDepth(dm, point, &d)); 3316212103e5SMatthew Knepley subp = DMPlexFilterPoint_Internal(point, firstSubPoint[d], numSubPoints[d], subpoints[d]); 33179566063dSJacob Faibussowitsch if (subp >= 0) PetscCall(DMLabelSetValue(newlabel, subp, values[v])); 3318212103e5SMatthew Knepley } 33199566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(pointIS, &points)); 33209566063dSJacob Faibussowitsch PetscCall(ISDestroy(&pointIS)); 3321212103e5SMatthew Knepley } 33229566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(valueIS, &values)); 33239566063dSJacob Faibussowitsch PetscCall(ISDestroy(&valueIS)); 3324212103e5SMatthew Knepley } 33253ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3326212103e5SMatthew Knepley } 3327212103e5SMatthew Knepley 3328d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexCreateSubmeshGeneric_Interpolated(DM dm, DMLabel label, PetscInt value, PetscBool markedFaces, PetscBool isCohesive, PetscInt cellHeight, DM subdm) 3329d71ae5a4SJacob Faibussowitsch { 333082f516ccSBarry Smith MPI_Comm comm; 333153156dfcSMatthew G. Knepley DMLabel subpointMap; 3332efa14ee0SMatthew G Knepley IS *subpointIS; 3333efa14ee0SMatthew G Knepley const PetscInt **subpoints; 33343982b651SMatthew G. Knepley PetscInt *numSubPoints, *firstSubPoint, *coneNew, *orntNew; 3335dd05d810SMatthew G. Knepley PetscInt totSubPoints = 0, maxConeSize, dim, sdim, cdim, p, d, v; 33360d366550SMatthew G. Knepley PetscMPIInt rank; 3337e6ccafaeSMatthew G Knepley 3338e6ccafaeSMatthew G Knepley PetscFunctionBegin; 33399566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)dm, &comm)); 33409566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 3341efa14ee0SMatthew G Knepley /* Create subpointMap which marks the submesh */ 33429566063dSJacob Faibussowitsch PetscCall(DMLabelCreate(PETSC_COMM_SELF, "subpoint_map", &subpointMap)); 33439566063dSJacob Faibussowitsch PetscCall(DMPlexSetSubpointMap(subdm, subpointMap)); 3344bec263e5SMatthew G. Knepley if (cellHeight) { 33459566063dSJacob Faibussowitsch if (isCohesive) PetscCall(DMPlexMarkCohesiveSubmesh_Interpolated(dm, label, value, subpointMap, subdm)); 33469566063dSJacob Faibussowitsch else PetscCall(DMPlexMarkSubmesh_Interpolated(dm, label, value, markedFaces, subpointMap, subdm)); 3347bec263e5SMatthew G. Knepley } else { 3348bec263e5SMatthew G. Knepley DMLabel depth; 3349bec263e5SMatthew G. Knepley IS pointIS; 3350bec263e5SMatthew G. Knepley const PetscInt *points; 3351b85c8bf9SMatthew G. Knepley PetscInt numPoints = 0; 3352bec263e5SMatthew G. Knepley 33539566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthLabel(dm, &depth)); 33549566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(label, value, &pointIS)); 3355b85c8bf9SMatthew G. Knepley if (pointIS) { 33569566063dSJacob Faibussowitsch PetscCall(ISGetIndices(pointIS, &points)); 33579566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(pointIS, &numPoints)); 3358b85c8bf9SMatthew G. Knepley } 3359bec263e5SMatthew G. Knepley for (p = 0; p < numPoints; ++p) { 3360bec263e5SMatthew G. Knepley PetscInt *closure = NULL; 3361bec263e5SMatthew G. Knepley PetscInt closureSize, c, pdim; 3362bec263e5SMatthew G. Knepley 33639566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(dm, points[p], PETSC_TRUE, &closureSize, &closure)); 3364bec263e5SMatthew G. Knepley for (c = 0; c < closureSize * 2; c += 2) { 33659566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(depth, closure[c], &pdim)); 33669566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(subpointMap, closure[c], pdim)); 3367bec263e5SMatthew G. Knepley } 33689566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dm, points[p], PETSC_TRUE, &closureSize, &closure)); 3369bec263e5SMatthew G. Knepley } 33709566063dSJacob Faibussowitsch if (pointIS) PetscCall(ISRestoreIndices(pointIS, &points)); 33719566063dSJacob Faibussowitsch PetscCall(ISDestroy(&pointIS)); 3372bec263e5SMatthew G. Knepley } 3373efa14ee0SMatthew G Knepley /* Setup chart */ 33749566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 3375dd05d810SMatthew G. Knepley PetscCall(DMGetCoordinateDim(dm, &cdim)); 33769566063dSJacob Faibussowitsch PetscCall(PetscMalloc4(dim + 1, &numSubPoints, dim + 1, &firstSubPoint, dim + 1, &subpointIS, dim + 1, &subpoints)); 3377e6ccafaeSMatthew G Knepley for (d = 0; d <= dim; ++d) { 33789566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumSize(subpointMap, d, &numSubPoints[d])); 3379e6ccafaeSMatthew G Knepley totSubPoints += numSubPoints[d]; 3380e6ccafaeSMatthew G Knepley } 3381dd05d810SMatthew G. Knepley // Determine submesh dimension 3382dd05d810SMatthew G. Knepley PetscCall(DMGetDimension(subdm, &sdim)); 3383dd05d810SMatthew G. Knepley if (sdim > 0) { 3384dd05d810SMatthew G. Knepley // Calling function knows what dimension to use, and we include neighboring cells as well 3385dd05d810SMatthew G. Knepley sdim = dim; 3386dd05d810SMatthew G. Knepley } else { 3387dd05d810SMatthew G. Knepley // We reset the subdimension based on what is being selected 3388dd05d810SMatthew G. Knepley PetscInt lsdim; 3389dd05d810SMatthew G. Knepley for (lsdim = dim; lsdim >= 0; --lsdim) 3390dd05d810SMatthew G. Knepley if (numSubPoints[lsdim]) break; 3391a5a714f4SStefano Zampini PetscCall(MPIU_Allreduce(&lsdim, &sdim, 1, MPIU_INT, MPI_MAX, comm)); 3392dd05d810SMatthew G. Knepley PetscCall(DMSetDimension(subdm, sdim)); 3393dd05d810SMatthew G. Knepley PetscCall(DMSetCoordinateDim(subdm, cdim)); 3394dd05d810SMatthew G. Knepley } 33959566063dSJacob Faibussowitsch PetscCall(DMPlexSetChart(subdm, 0, totSubPoints)); 33969566063dSJacob Faibussowitsch PetscCall(DMPlexSetVTKCellHeight(subdm, cellHeight)); 3397e6ccafaeSMatthew G Knepley /* Set cone sizes */ 3398dd05d810SMatthew G. Knepley firstSubPoint[sdim] = 0; 3399dd05d810SMatthew G. Knepley firstSubPoint[0] = firstSubPoint[sdim] + numSubPoints[sdim]; 3400dd05d810SMatthew G. Knepley if (sdim > 1) firstSubPoint[sdim - 1] = firstSubPoint[0] + numSubPoints[0]; 3401dd05d810SMatthew G. Knepley if (sdim > 2) firstSubPoint[sdim - 2] = firstSubPoint[sdim - 1] + numSubPoints[sdim - 1]; 3402dd05d810SMatthew G. Knepley for (d = 0; d <= sdim; ++d) { 34039566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(subpointMap, d, &subpointIS[d])); 34049566063dSJacob Faibussowitsch if (subpointIS[d]) PetscCall(ISGetIndices(subpointIS[d], &subpoints[d])); 3405e6ccafaeSMatthew G Knepley } 3406412e9a14SMatthew G. Knepley /* We do not want this label automatically computed, instead we compute it here */ 34079566063dSJacob Faibussowitsch PetscCall(DMCreateLabel(subdm, "celltype")); 3408dd05d810SMatthew G. Knepley for (d = 0; d <= sdim; ++d) { 3409e6ccafaeSMatthew G Knepley for (p = 0; p < numSubPoints[d]; ++p) { 3410e6ccafaeSMatthew G Knepley const PetscInt point = subpoints[d][p]; 3411e6ccafaeSMatthew G Knepley const PetscInt subpoint = firstSubPoint[d] + p; 3412e6ccafaeSMatthew G Knepley const PetscInt *cone; 341315100a53SVaclav Hapla PetscInt coneSize; 3414e6ccafaeSMatthew G Knepley 34159566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, point, &coneSize)); 3416dd05d810SMatthew G. Knepley if (cellHeight && (d == sdim)) { 341715100a53SVaclav Hapla PetscInt coneSizeNew, c, val; 341815100a53SVaclav Hapla 34199566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, point, &cone)); 3420e6ccafaeSMatthew G Knepley for (c = 0, coneSizeNew = 0; c < coneSize; ++c) { 34219566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(subpointMap, cone[c], &val)); 3422e6ccafaeSMatthew G Knepley if (val >= 0) coneSizeNew++; 3423e6ccafaeSMatthew G Knepley } 34249566063dSJacob Faibussowitsch PetscCall(DMPlexSetConeSize(subdm, subpoint, coneSizeNew)); 34259566063dSJacob Faibussowitsch PetscCall(DMPlexSetCellType(subdm, subpoint, DM_POLYTOPE_FV_GHOST)); 342615100a53SVaclav Hapla } else { 342715100a53SVaclav Hapla DMPolytopeType ct; 342815100a53SVaclav Hapla 342915100a53SVaclav Hapla PetscCall(DMPlexSetConeSize(subdm, subpoint, coneSize)); 343015100a53SVaclav Hapla PetscCall(DMPlexGetCellType(dm, point, &ct)); 343115100a53SVaclav Hapla PetscCall(DMPlexSetCellType(subdm, subpoint, ct)); 3432e6ccafaeSMatthew G Knepley } 3433e6ccafaeSMatthew G Knepley } 3434e6ccafaeSMatthew G Knepley } 34359566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&subpointMap)); 34369566063dSJacob Faibussowitsch PetscCall(DMSetUp(subdm)); 3437e6ccafaeSMatthew G Knepley /* Set cones */ 34389566063dSJacob Faibussowitsch PetscCall(DMPlexGetMaxSizes(dm, &maxConeSize, NULL)); 34399566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(maxConeSize, &coneNew, maxConeSize, &orntNew)); 3440dd05d810SMatthew G. Knepley for (d = 0; d <= sdim; ++d) { 3441e6ccafaeSMatthew G Knepley for (p = 0; p < numSubPoints[d]; ++p) { 3442e6ccafaeSMatthew G Knepley const PetscInt point = subpoints[d][p]; 3443e6ccafaeSMatthew G Knepley const PetscInt subpoint = firstSubPoint[d] + p; 34440e49e2e2SMatthew G. Knepley const PetscInt *cone, *ornt; 34450d366550SMatthew G. Knepley PetscInt coneSize, subconeSize, coneSizeNew, c, subc, fornt = 0; 3446e6ccafaeSMatthew G Knepley 3447dd05d810SMatthew G. Knepley if (d == sdim - 1) { 34480d366550SMatthew G. Knepley const PetscInt *support, *cone, *ornt; 34490d366550SMatthew G. Knepley PetscInt supportSize, coneSize, s, subc; 34500d366550SMatthew G. Knepley 34519566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(dm, point, &support)); 34529566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dm, point, &supportSize)); 34530d366550SMatthew G. Knepley for (s = 0; s < supportSize; ++s) { 3454064cae4fSPierre Jolivet PetscBool isHybrid = PETSC_FALSE; 3455412e9a14SMatthew G. Knepley 34569566063dSJacob Faibussowitsch PetscCall(DMPlexCellIsHybrid_Internal(dm, support[s], &isHybrid)); 3457412e9a14SMatthew G. Knepley if (!isHybrid) continue; 34589566063dSJacob Faibussowitsch PetscCall(PetscFindInt(support[s], numSubPoints[d + 1], subpoints[d + 1], &subc)); 34590d366550SMatthew G. Knepley if (subc >= 0) { 34600d366550SMatthew G. Knepley const PetscInt ccell = subpoints[d + 1][subc]; 34610d366550SMatthew G. Knepley 34629566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, ccell, &cone)); 34639566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, ccell, &coneSize)); 34649566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeOrientation(dm, ccell, &ornt)); 34650d366550SMatthew G. Knepley for (c = 0; c < coneSize; ++c) { 34660d366550SMatthew G. Knepley if (cone[c] == point) { 34670d366550SMatthew G. Knepley fornt = ornt[c]; 34680d366550SMatthew G. Knepley break; 34690d366550SMatthew G. Knepley } 34700d366550SMatthew G. Knepley } 34710d366550SMatthew G. Knepley break; 34720d366550SMatthew G. Knepley } 34730d366550SMatthew G. Knepley } 34740d366550SMatthew G. Knepley } 34759566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, point, &coneSize)); 34769566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(subdm, subpoint, &subconeSize)); 34779566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, point, &cone)); 34789566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeOrientation(dm, point, &ornt)); 3479e6ccafaeSMatthew G Knepley for (c = 0, coneSizeNew = 0; c < coneSize; ++c) { 34809566063dSJacob Faibussowitsch PetscCall(PetscFindInt(cone[c], numSubPoints[d - 1], subpoints[d - 1], &subc)); 348101a2673eSMatthew G. Knepley if (subc >= 0) { 348201a2673eSMatthew G. Knepley coneNew[coneSizeNew] = firstSubPoint[d - 1] + subc; 34833982b651SMatthew G. Knepley orntNew[coneSizeNew] = ornt[c]; 348401a2673eSMatthew G. Knepley ++coneSizeNew; 348501a2673eSMatthew G. Knepley } 3486e6ccafaeSMatthew G Knepley } 348763a3b9bcSJacob Faibussowitsch PetscCheck(coneSizeNew == subconeSize, comm, PETSC_ERR_PLIB, "Number of cone points located %" PetscInt_FMT " does not match subcone size %" PetscInt_FMT, coneSizeNew, subconeSize); 34889566063dSJacob Faibussowitsch PetscCall(DMPlexSetCone(subdm, subpoint, coneNew)); 34899566063dSJacob Faibussowitsch PetscCall(DMPlexSetConeOrientation(subdm, subpoint, orntNew)); 34909566063dSJacob Faibussowitsch if (fornt < 0) PetscCall(DMPlexOrientPoint(subdm, subpoint, fornt)); 3491e6ccafaeSMatthew G Knepley } 3492e6ccafaeSMatthew G Knepley } 34939566063dSJacob Faibussowitsch PetscCall(PetscFree2(coneNew, orntNew)); 34949566063dSJacob Faibussowitsch PetscCall(DMPlexSymmetrize(subdm)); 34959566063dSJacob Faibussowitsch PetscCall(DMPlexStratify(subdm)); 3496e6ccafaeSMatthew G Knepley /* Build coordinates */ 3497e6ccafaeSMatthew G Knepley { 3498e6ccafaeSMatthew G Knepley PetscSection coordSection, subCoordSection; 3499e6ccafaeSMatthew G Knepley Vec coordinates, subCoordinates; 3500e6ccafaeSMatthew G Knepley PetscScalar *coords, *subCoords; 3501c0e8cf5fSMatthew G. Knepley PetscInt cdim, numComp, coordSize; 350224640c55SToby Isaac const char *name; 3503e6ccafaeSMatthew G Knepley 35049566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDim(dm, &cdim)); 35059566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateSection(dm, &coordSection)); 35069566063dSJacob Faibussowitsch PetscCall(DMGetCoordinatesLocal(dm, &coordinates)); 35079566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateSection(subdm, &subCoordSection)); 35089566063dSJacob Faibussowitsch PetscCall(PetscSectionSetNumFields(subCoordSection, 1)); 35099566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldComponents(coordSection, 0, &numComp)); 35109566063dSJacob Faibussowitsch PetscCall(PetscSectionSetFieldComponents(subCoordSection, 0, numComp)); 35119566063dSJacob Faibussowitsch PetscCall(PetscSectionSetChart(subCoordSection, firstSubPoint[0], firstSubPoint[0] + numSubPoints[0])); 3512e6ccafaeSMatthew G Knepley for (v = 0; v < numSubPoints[0]; ++v) { 3513e6ccafaeSMatthew G Knepley const PetscInt vertex = subpoints[0][v]; 3514e6ccafaeSMatthew G Knepley const PetscInt subvertex = firstSubPoint[0] + v; 3515e6ccafaeSMatthew G Knepley PetscInt dof; 3516e6ccafaeSMatthew G Knepley 35179566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(coordSection, vertex, &dof)); 35189566063dSJacob Faibussowitsch PetscCall(PetscSectionSetDof(subCoordSection, subvertex, dof)); 35199566063dSJacob Faibussowitsch PetscCall(PetscSectionSetFieldDof(subCoordSection, subvertex, 0, dof)); 3520e6ccafaeSMatthew G Knepley } 35219566063dSJacob Faibussowitsch PetscCall(PetscSectionSetUp(subCoordSection)); 35229566063dSJacob Faibussowitsch PetscCall(PetscSectionGetStorageSize(subCoordSection, &coordSize)); 35239566063dSJacob Faibussowitsch PetscCall(VecCreate(PETSC_COMM_SELF, &subCoordinates)); 35249566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)coordinates, &name)); 35259566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)subCoordinates, name)); 35269566063dSJacob Faibussowitsch PetscCall(VecSetSizes(subCoordinates, coordSize, PETSC_DETERMINE)); 35279566063dSJacob Faibussowitsch PetscCall(VecSetBlockSize(subCoordinates, cdim)); 35289566063dSJacob Faibussowitsch PetscCall(VecSetType(subCoordinates, VECSTANDARD)); 35299566063dSJacob Faibussowitsch PetscCall(VecGetArray(coordinates, &coords)); 35309566063dSJacob Faibussowitsch PetscCall(VecGetArray(subCoordinates, &subCoords)); 3531e6ccafaeSMatthew G Knepley for (v = 0; v < numSubPoints[0]; ++v) { 3532e6ccafaeSMatthew G Knepley const PetscInt vertex = subpoints[0][v]; 3533e6ccafaeSMatthew G Knepley const PetscInt subvertex = firstSubPoint[0] + v; 3534e6ccafaeSMatthew G Knepley PetscInt dof, off, sdof, soff, d; 3535e6ccafaeSMatthew G Knepley 35369566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(coordSection, vertex, &dof)); 35379566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(coordSection, vertex, &off)); 35389566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(subCoordSection, subvertex, &sdof)); 35399566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(subCoordSection, subvertex, &soff)); 354063a3b9bcSJacob Faibussowitsch PetscCheck(dof == sdof, comm, PETSC_ERR_PLIB, "Coordinate dimension %" PetscInt_FMT " on subvertex %" PetscInt_FMT ", vertex %" PetscInt_FMT " should be %" PetscInt_FMT, sdof, subvertex, vertex, dof); 3541efa14ee0SMatthew G Knepley for (d = 0; d < dof; ++d) subCoords[soff + d] = coords[off + d]; 3542e6ccafaeSMatthew G Knepley } 35439566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(coordinates, &coords)); 35449566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(subCoordinates, &subCoords)); 35459566063dSJacob Faibussowitsch PetscCall(DMSetCoordinatesLocal(subdm, subCoordinates)); 35469566063dSJacob Faibussowitsch PetscCall(VecDestroy(&subCoordinates)); 3547e6ccafaeSMatthew G Knepley } 35483982b651SMatthew G. Knepley /* Build SF: We need this complexity because subpoints might not be selected on the owning process */ 35493982b651SMatthew G. Knepley { 35503982b651SMatthew G. Knepley PetscSF sfPoint, sfPointSub; 35513982b651SMatthew G. Knepley IS subpIS; 35523982b651SMatthew G. Knepley const PetscSFNode *remotePoints; 35535033f954SMatthew G. Knepley PetscSFNode *sremotePoints = NULL, *newLocalPoints = NULL, *newOwners = NULL; 35545033f954SMatthew G. Knepley const PetscInt *localPoints, *subpoints, *rootdegree; 3555dd05d810SMatthew G. Knepley PetscInt *slocalPoints = NULL, *sortedPoints = NULL, *sortedIndices = NULL; 35565033f954SMatthew G. Knepley PetscInt numRoots, numLeaves, numSubpoints = 0, numSubroots, numSubleaves = 0, l, sl = 0, ll = 0, pStart, pEnd, p; 35575033f954SMatthew G. Knepley PetscMPIInt rank, size; 35583982b651SMatthew G. Knepley 35599566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)dm), &rank)); 35605033f954SMatthew G. Knepley PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)dm), &size)); 35619566063dSJacob Faibussowitsch PetscCall(DMGetPointSF(dm, &sfPoint)); 35629566063dSJacob Faibussowitsch PetscCall(DMGetPointSF(subdm, &sfPointSub)); 35639566063dSJacob Faibussowitsch PetscCall(DMPlexGetChart(dm, &pStart, &pEnd)); 35649566063dSJacob Faibussowitsch PetscCall(DMPlexGetChart(subdm, NULL, &numSubroots)); 35659566063dSJacob Faibussowitsch PetscCall(DMPlexGetSubpointIS(subdm, &subpIS)); 35663982b651SMatthew G. Knepley if (subpIS) { 3567dd05d810SMatthew G. Knepley PetscBool sorted = PETSC_TRUE; 3568dd05d810SMatthew G. Knepley 35699566063dSJacob Faibussowitsch PetscCall(ISGetIndices(subpIS, &subpoints)); 35709566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(subpIS, &numSubpoints)); 3571dd05d810SMatthew G. Knepley for (p = 1; p < numSubpoints; ++p) sorted = sorted && (subpoints[p] >= subpoints[p - 1]) ? PETSC_TRUE : PETSC_FALSE; 3572dd05d810SMatthew G. Knepley if (!sorted) { 3573dd05d810SMatthew G. Knepley PetscCall(PetscMalloc2(numSubpoints, &sortedPoints, numSubpoints, &sortedIndices)); 3574dd05d810SMatthew G. Knepley for (p = 0; p < numSubpoints; ++p) sortedIndices[p] = p; 3575dd05d810SMatthew G. Knepley PetscCall(PetscArraycpy(sortedPoints, subpoints, numSubpoints)); 3576dd05d810SMatthew G. Knepley PetscCall(PetscSortIntWithArray(numSubpoints, sortedPoints, sortedIndices)); 3577dd05d810SMatthew G. Knepley } 35783982b651SMatthew G. Knepley } 35799566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(sfPoint, &numRoots, &numLeaves, &localPoints, &remotePoints)); 35803982b651SMatthew G. Knepley if (numRoots >= 0) { 35815033f954SMatthew G. Knepley PetscCall(PetscSFComputeDegreeBegin(sfPoint, &rootdegree)); 35825033f954SMatthew G. Knepley PetscCall(PetscSFComputeDegreeEnd(sfPoint, &rootdegree)); 35839566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(pEnd - pStart, &newLocalPoints, numRoots, &newOwners)); 35843982b651SMatthew G. Knepley for (p = 0; p < pEnd - pStart; ++p) { 35853982b651SMatthew G. Knepley newLocalPoints[p].rank = -2; 35863982b651SMatthew G. Knepley newLocalPoints[p].index = -2; 35873982b651SMatthew G. Knepley } 35883982b651SMatthew G. Knepley /* Set subleaves */ 35893982b651SMatthew G. Knepley for (l = 0; l < numLeaves; ++l) { 35903982b651SMatthew G. Knepley const PetscInt point = localPoints[l]; 3591dd05d810SMatthew G. Knepley const PetscInt subpoint = DMPlexFilterPointPerm_Internal(point, 0, numSubpoints, sortedPoints ? sortedPoints : subpoints, sortedIndices); 35923982b651SMatthew G. Knepley 35933982b651SMatthew G. Knepley if (subpoint < 0) continue; 35943982b651SMatthew G. Knepley newLocalPoints[point - pStart].rank = rank; 35953982b651SMatthew G. Knepley newLocalPoints[point - pStart].index = subpoint; 35963982b651SMatthew G. Knepley ++numSubleaves; 35973982b651SMatthew G. Knepley } 35983982b651SMatthew G. Knepley /* Must put in owned subpoints */ 35993982b651SMatthew G. Knepley for (p = pStart; p < pEnd; ++p) { 36003982b651SMatthew G. Knepley newOwners[p - pStart].rank = -3; 36013982b651SMatthew G. Knepley newOwners[p - pStart].index = -3; 36023982b651SMatthew G. Knepley } 3603d9384f27SMatthew G. Knepley for (p = 0; p < numSubpoints; ++p) { 36045033f954SMatthew G. Knepley /* Hold on to currently owned points */ 36055033f954SMatthew G. Knepley if (rootdegree[subpoints[p] - pStart]) newOwners[subpoints[p] - pStart].rank = rank + size; 36065033f954SMatthew G. Knepley else newOwners[subpoints[p] - pStart].rank = rank; 3607d9384f27SMatthew G. Knepley newOwners[subpoints[p] - pStart].index = p; 36083982b651SMatthew G. Knepley } 36099566063dSJacob Faibussowitsch PetscCall(PetscSFReduceBegin(sfPoint, MPIU_2INT, newLocalPoints, newOwners, MPI_MAXLOC)); 36109566063dSJacob Faibussowitsch PetscCall(PetscSFReduceEnd(sfPoint, MPIU_2INT, newLocalPoints, newOwners, MPI_MAXLOC)); 36119371c9d4SSatish Balay for (p = pStart; p < pEnd; ++p) 36129371c9d4SSatish Balay if (newOwners[p - pStart].rank >= size) newOwners[p - pStart].rank -= size; 36139566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(sfPoint, MPIU_2INT, newOwners, newLocalPoints, MPI_REPLACE)); 36149566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(sfPoint, MPIU_2INT, newOwners, newLocalPoints, MPI_REPLACE)); 36159566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(numSubleaves, &slocalPoints)); 36169566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(numSubleaves, &sremotePoints)); 36175033f954SMatthew G. Knepley for (l = 0; l < numLeaves; ++l) { 36183982b651SMatthew G. Knepley const PetscInt point = localPoints[l]; 3619dd05d810SMatthew G. Knepley const PetscInt subpoint = DMPlexFilterPointPerm_Internal(point, 0, numSubpoints, sortedPoints ? sortedPoints : subpoints, sortedIndices); 36203982b651SMatthew G. Knepley 36213982b651SMatthew G. Knepley if (subpoint < 0) continue; 36229371c9d4SSatish Balay if (newLocalPoints[point].rank == rank) { 36239371c9d4SSatish Balay ++ll; 36249371c9d4SSatish Balay continue; 36259371c9d4SSatish Balay } 36263982b651SMatthew G. Knepley slocalPoints[sl] = subpoint; 36273982b651SMatthew G. Knepley sremotePoints[sl].rank = newLocalPoints[point].rank; 36283982b651SMatthew G. Knepley sremotePoints[sl].index = newLocalPoints[point].index; 362963a3b9bcSJacob Faibussowitsch PetscCheck(sremotePoints[sl].rank >= 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid remote rank for local point %" PetscInt_FMT, point); 363063a3b9bcSJacob Faibussowitsch PetscCheck(sremotePoints[sl].index >= 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid remote subpoint for local point %" PetscInt_FMT, point); 36313982b651SMatthew G. Knepley ++sl; 36323982b651SMatthew G. Knepley } 36331dca8a05SBarry Smith PetscCheck(sl + ll == numSubleaves, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Mismatch in number of subleaves %" PetscInt_FMT " + %" PetscInt_FMT " != %" PetscInt_FMT, sl, ll, numSubleaves); 36349566063dSJacob Faibussowitsch PetscCall(PetscFree2(newLocalPoints, newOwners)); 36359566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(sfPointSub, numSubroots, sl, slocalPoints, PETSC_OWN_POINTER, sremotePoints, PETSC_OWN_POINTER)); 36363982b651SMatthew G. Knepley } 363748a46eb9SPierre Jolivet if (subpIS) PetscCall(ISRestoreIndices(subpIS, &subpoints)); 3638dd05d810SMatthew G. Knepley PetscCall(PetscFree2(sortedPoints, sortedIndices)); 36393982b651SMatthew G. Knepley } 3640212103e5SMatthew Knepley /* Filter labels */ 36419566063dSJacob Faibussowitsch PetscCall(DMPlexFilterLabels_Internal(dm, numSubPoints, subpoints, firstSubPoint, subdm)); 3642efa14ee0SMatthew G Knepley /* Cleanup */ 3643dd05d810SMatthew G. Knepley for (d = 0; d <= sdim; ++d) { 36449566063dSJacob Faibussowitsch if (subpointIS[d]) PetscCall(ISRestoreIndices(subpointIS[d], &subpoints[d])); 36459566063dSJacob Faibussowitsch PetscCall(ISDestroy(&subpointIS[d])); 3646e6ccafaeSMatthew G Knepley } 36479566063dSJacob Faibussowitsch PetscCall(PetscFree4(numSubPoints, firstSubPoint, subpointIS, subpoints)); 36483ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3649e6ccafaeSMatthew G Knepley } 3650e6ccafaeSMatthew G Knepley 3651d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexCreateSubmesh_Interpolated(DM dm, DMLabel vertexLabel, PetscInt value, PetscBool markedFaces, DM subdm) 3652d71ae5a4SJacob Faibussowitsch { 36533982b651SMatthew G. Knepley PetscFunctionBegin; 36549566063dSJacob Faibussowitsch PetscCall(DMPlexCreateSubmeshGeneric_Interpolated(dm, vertexLabel, value, markedFaces, PETSC_FALSE, 1, subdm)); 36553ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 36563982b651SMatthew G. Knepley } 36573982b651SMatthew G. Knepley 3658d0fa310fSMatthew G. Knepley /*@ 3659e6ccafaeSMatthew G Knepley DMPlexCreateSubmesh - Extract a hypersurface from the mesh using vertices defined by a label 3660e6ccafaeSMatthew G Knepley 3661e6ccafaeSMatthew G Knepley Input Parameters: 3662e6ccafaeSMatthew G Knepley + dm - The original mesh 366320f4b53cSBarry Smith . vertexLabel - The `DMLabel` marking points contained in the surface 3664158acfadSMatthew G. Knepley . value - The label value to use 366520f4b53cSBarry Smith - markedFaces - `PETSC_TRUE` if surface faces are marked in addition to vertices, `PETSC_FALSE` if only vertices are marked 3666e6ccafaeSMatthew G Knepley 3667e6ccafaeSMatthew G Knepley Output Parameter: 3668e6ccafaeSMatthew G Knepley . subdm - The surface mesh 3669e6ccafaeSMatthew G Knepley 3670e6ccafaeSMatthew G Knepley Level: developer 3671e6ccafaeSMatthew G Knepley 367220f4b53cSBarry Smith Note: 367320f4b53cSBarry Smith This function produces a `DMLabel` mapping original points in the submesh to their depth. This can be obtained using `DMPlexGetSubpointMap()`. 367420f4b53cSBarry Smith 36751cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexGetSubpointMap()`, `DMGetLabel()`, `DMLabelSetValue()` 3676830e53efSMatthew G. Knepley @*/ 3677d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexCreateSubmesh(DM dm, DMLabel vertexLabel, PetscInt value, PetscBool markedFaces, DM *subdm) 3678d71ae5a4SJacob Faibussowitsch { 3679827c4036SVaclav Hapla DMPlexInterpolatedFlag interpolated; 3680827c4036SVaclav Hapla PetscInt dim, cdim; 3681e6ccafaeSMatthew G Knepley 3682e6ccafaeSMatthew G Knepley PetscFunctionBegin; 3683e6ccafaeSMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 36844f572ea9SToby Isaac PetscAssertPointer(subdm, 5); 36859566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 36869566063dSJacob Faibussowitsch PetscCall(DMCreate(PetscObjectComm((PetscObject)dm), subdm)); 36879566063dSJacob Faibussowitsch PetscCall(DMSetType(*subdm, DMPLEX)); 36889566063dSJacob Faibussowitsch PetscCall(DMSetDimension(*subdm, dim - 1)); 36899566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDim(dm, &cdim)); 36909566063dSJacob Faibussowitsch PetscCall(DMSetCoordinateDim(*subdm, cdim)); 36919566063dSJacob Faibussowitsch PetscCall(DMPlexIsInterpolated(dm, &interpolated)); 369208401ef6SPierre Jolivet PetscCheck(interpolated != DMPLEX_INTERPOLATED_PARTIAL, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Not for partially interpolated meshes"); 3693827c4036SVaclav Hapla if (interpolated) { 36949566063dSJacob Faibussowitsch PetscCall(DMPlexCreateSubmesh_Interpolated(dm, vertexLabel, value, markedFaces, *subdm)); 3695e6ccafaeSMatthew G Knepley } else { 36969566063dSJacob Faibussowitsch PetscCall(DMPlexCreateSubmesh_Uninterpolated(dm, vertexLabel, value, *subdm)); 3697e6ccafaeSMatthew G Knepley } 36985de52c6dSVaclav Hapla PetscCall(DMPlexCopy_Internal(dm, PETSC_TRUE, PETSC_TRUE, *subdm)); 36993ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3700e6ccafaeSMatthew G Knepley } 3701e6ccafaeSMatthew G Knepley 3702d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexCreateCohesiveSubmesh_Uninterpolated(DM dm, PetscBool hasLagrange, const char label[], PetscInt value, DM subdm) 3703d71ae5a4SJacob Faibussowitsch { 3704766ab985SMatthew G. Knepley MPI_Comm comm; 3705766ab985SMatthew G. Knepley DMLabel subpointMap; 3706766ab985SMatthew G. Knepley IS subvertexIS; 3707766ab985SMatthew G. Knepley const PetscInt *subVertices; 3708fed694aaSMatthew G. Knepley PetscInt numSubVertices, firstSubVertex, numSubCells, *subCells = NULL; 3709766ab985SMatthew G. Knepley PetscInt *subface, maxConeSize, numSubFaces, firstSubFace, newFacePoint, nFV; 3710412e9a14SMatthew G. Knepley PetscInt c, f; 3711766ab985SMatthew G. Knepley 3712766ab985SMatthew G. Knepley PetscFunctionBegin; 37139566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)dm, &comm)); 3714766ab985SMatthew G. Knepley /* Create subpointMap which marks the submesh */ 37159566063dSJacob Faibussowitsch PetscCall(DMLabelCreate(PETSC_COMM_SELF, "subpoint_map", &subpointMap)); 37169566063dSJacob Faibussowitsch PetscCall(DMPlexSetSubpointMap(subdm, subpointMap)); 37179566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&subpointMap)); 37189566063dSJacob Faibussowitsch PetscCall(DMPlexMarkCohesiveSubmesh_Uninterpolated(dm, hasLagrange, label, value, subpointMap, &numSubFaces, &nFV, &subCells, subdm)); 3719766ab985SMatthew G. Knepley /* Setup chart */ 37209566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumSize(subpointMap, 0, &numSubVertices)); 37219566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumSize(subpointMap, 2, &numSubCells)); 37229566063dSJacob Faibussowitsch PetscCall(DMPlexSetChart(subdm, 0, numSubCells + numSubFaces + numSubVertices)); 37239566063dSJacob Faibussowitsch PetscCall(DMPlexSetVTKCellHeight(subdm, 1)); 3724766ab985SMatthew G. Knepley /* Set cone sizes */ 3725766ab985SMatthew G. Knepley firstSubVertex = numSubCells; 3726766ab985SMatthew G. Knepley firstSubFace = numSubCells + numSubVertices; 3727766ab985SMatthew G. Knepley newFacePoint = firstSubFace; 37289566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(subpointMap, 0, &subvertexIS)); 37299566063dSJacob Faibussowitsch if (subvertexIS) PetscCall(ISGetIndices(subvertexIS, &subVertices)); 373048a46eb9SPierre Jolivet for (c = 0; c < numSubCells; ++c) PetscCall(DMPlexSetConeSize(subdm, c, 1)); 373148a46eb9SPierre Jolivet for (f = firstSubFace; f < firstSubFace + numSubFaces; ++f) PetscCall(DMPlexSetConeSize(subdm, f, nFV)); 37329566063dSJacob Faibussowitsch PetscCall(DMSetUp(subdm)); 3733766ab985SMatthew G. Knepley /* Create face cones */ 37349566063dSJacob Faibussowitsch PetscCall(DMPlexGetMaxSizes(dm, &maxConeSize, NULL)); 37359566063dSJacob Faibussowitsch PetscCall(DMGetWorkArray(subdm, maxConeSize, MPIU_INT, (void **)&subface)); 3736766ab985SMatthew G. Knepley for (c = 0; c < numSubCells; ++c) { 3737766ab985SMatthew G. Knepley const PetscInt cell = subCells[c]; 3738766ab985SMatthew G. Knepley const PetscInt subcell = c; 373987feddfdSMatthew G. Knepley const PetscInt *cone, *cells; 3740064cae4fSPierre Jolivet PetscBool isHybrid = PETSC_FALSE; 374187feddfdSMatthew G. Knepley PetscInt numCells, subVertex, p, v; 3742766ab985SMatthew G. Knepley 37439566063dSJacob Faibussowitsch PetscCall(DMPlexCellIsHybrid_Internal(dm, cell, &isHybrid)); 3744412e9a14SMatthew G. Knepley if (!isHybrid) continue; 37459566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, cell, &cone)); 374687feddfdSMatthew G. Knepley for (v = 0; v < nFV; ++v) { 37479566063dSJacob Faibussowitsch PetscCall(PetscFindInt(cone[v], numSubVertices, subVertices, &subVertex)); 374887feddfdSMatthew G. Knepley subface[v] = firstSubVertex + subVertex; 374987feddfdSMatthew G. Knepley } 37509566063dSJacob Faibussowitsch PetscCall(DMPlexSetCone(subdm, newFacePoint, subface)); 37519566063dSJacob Faibussowitsch PetscCall(DMPlexSetCone(subdm, subcell, &newFacePoint)); 37529566063dSJacob Faibussowitsch PetscCall(DMPlexGetJoin(dm, nFV, cone, &numCells, &cells)); 375327234c99SMatthew G. Knepley /* Not true in parallel 375408401ef6SPierre Jolivet PetscCheck(numCells == 2,PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Cohesive cells should separate two cells"); */ 375587feddfdSMatthew G. Knepley for (p = 0; p < numCells; ++p) { 375687feddfdSMatthew G. Knepley PetscInt negsubcell; 3757064cae4fSPierre Jolivet PetscBool isHybrid = PETSC_FALSE; 3758766ab985SMatthew G. Knepley 37599566063dSJacob Faibussowitsch PetscCall(DMPlexCellIsHybrid_Internal(dm, cells[p], &isHybrid)); 3760412e9a14SMatthew G. Knepley if (isHybrid) continue; 376187feddfdSMatthew G. Knepley /* I know this is a crap search */ 376287feddfdSMatthew G. Knepley for (negsubcell = 0; negsubcell < numSubCells; ++negsubcell) { 376387feddfdSMatthew G. Knepley if (subCells[negsubcell] == cells[p]) break; 3764766ab985SMatthew G. Knepley } 376563a3b9bcSJacob Faibussowitsch PetscCheck(negsubcell != numSubCells, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Could not find negative face neighbor for cohesive cell %" PetscInt_FMT, cell); 37669566063dSJacob Faibussowitsch PetscCall(DMPlexSetCone(subdm, negsubcell, &newFacePoint)); 3767766ab985SMatthew G. Knepley } 37689566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreJoin(dm, nFV, cone, &numCells, &cells)); 376987feddfdSMatthew G. Knepley ++newFacePoint; 3770766ab985SMatthew G. Knepley } 37719566063dSJacob Faibussowitsch PetscCall(DMRestoreWorkArray(subdm, maxConeSize, MPIU_INT, (void **)&subface)); 37729566063dSJacob Faibussowitsch PetscCall(DMPlexSymmetrize(subdm)); 37739566063dSJacob Faibussowitsch PetscCall(DMPlexStratify(subdm)); 3774766ab985SMatthew G. Knepley /* Build coordinates */ 3775766ab985SMatthew G. Knepley { 3776766ab985SMatthew G. Knepley PetscSection coordSection, subCoordSection; 3777766ab985SMatthew G. Knepley Vec coordinates, subCoordinates; 3778766ab985SMatthew G. Knepley PetscScalar *coords, *subCoords; 3779c0e8cf5fSMatthew G. Knepley PetscInt cdim, numComp, coordSize, v; 378024640c55SToby Isaac const char *name; 3781766ab985SMatthew G. Knepley 37829566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDim(dm, &cdim)); 37839566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateSection(dm, &coordSection)); 37849566063dSJacob Faibussowitsch PetscCall(DMGetCoordinatesLocal(dm, &coordinates)); 37859566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateSection(subdm, &subCoordSection)); 37869566063dSJacob Faibussowitsch PetscCall(PetscSectionSetNumFields(subCoordSection, 1)); 37879566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldComponents(coordSection, 0, &numComp)); 37889566063dSJacob Faibussowitsch PetscCall(PetscSectionSetFieldComponents(subCoordSection, 0, numComp)); 37899566063dSJacob Faibussowitsch PetscCall(PetscSectionSetChart(subCoordSection, firstSubVertex, firstSubVertex + numSubVertices)); 3790766ab985SMatthew G. Knepley for (v = 0; v < numSubVertices; ++v) { 3791766ab985SMatthew G. Knepley const PetscInt vertex = subVertices[v]; 3792766ab985SMatthew G. Knepley const PetscInt subvertex = firstSubVertex + v; 3793766ab985SMatthew G. Knepley PetscInt dof; 3794766ab985SMatthew G. Knepley 37959566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(coordSection, vertex, &dof)); 37969566063dSJacob Faibussowitsch PetscCall(PetscSectionSetDof(subCoordSection, subvertex, dof)); 37979566063dSJacob Faibussowitsch PetscCall(PetscSectionSetFieldDof(subCoordSection, subvertex, 0, dof)); 3798766ab985SMatthew G. Knepley } 37999566063dSJacob Faibussowitsch PetscCall(PetscSectionSetUp(subCoordSection)); 38009566063dSJacob Faibussowitsch PetscCall(PetscSectionGetStorageSize(subCoordSection, &coordSize)); 38019566063dSJacob Faibussowitsch PetscCall(VecCreate(PETSC_COMM_SELF, &subCoordinates)); 38029566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)coordinates, &name)); 38039566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)subCoordinates, name)); 38049566063dSJacob Faibussowitsch PetscCall(VecSetSizes(subCoordinates, coordSize, PETSC_DETERMINE)); 38059566063dSJacob Faibussowitsch PetscCall(VecSetBlockSize(subCoordinates, cdim)); 38069566063dSJacob Faibussowitsch PetscCall(VecSetType(subCoordinates, VECSTANDARD)); 38079566063dSJacob Faibussowitsch PetscCall(VecGetArray(coordinates, &coords)); 38089566063dSJacob Faibussowitsch PetscCall(VecGetArray(subCoordinates, &subCoords)); 3809766ab985SMatthew G. Knepley for (v = 0; v < numSubVertices; ++v) { 3810766ab985SMatthew G. Knepley const PetscInt vertex = subVertices[v]; 3811766ab985SMatthew G. Knepley const PetscInt subvertex = firstSubVertex + v; 3812766ab985SMatthew G. Knepley PetscInt dof, off, sdof, soff, d; 3813766ab985SMatthew G. Knepley 38149566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(coordSection, vertex, &dof)); 38159566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(coordSection, vertex, &off)); 38169566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(subCoordSection, subvertex, &sdof)); 38179566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(subCoordSection, subvertex, &soff)); 381863a3b9bcSJacob Faibussowitsch PetscCheck(dof == sdof, comm, PETSC_ERR_PLIB, "Coordinate dimension %" PetscInt_FMT " on subvertex %" PetscInt_FMT ", vertex %" PetscInt_FMT " should be %" PetscInt_FMT, sdof, subvertex, vertex, dof); 3819766ab985SMatthew G. Knepley for (d = 0; d < dof; ++d) subCoords[soff + d] = coords[off + d]; 3820766ab985SMatthew G. Knepley } 38219566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(coordinates, &coords)); 38229566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(subCoordinates, &subCoords)); 38239566063dSJacob Faibussowitsch PetscCall(DMSetCoordinatesLocal(subdm, subCoordinates)); 38249566063dSJacob Faibussowitsch PetscCall(VecDestroy(&subCoordinates)); 3825766ab985SMatthew G. Knepley } 3826aca35d17SMatthew G. Knepley /* Build SF */ 3827aca35d17SMatthew G. Knepley CHKMEMQ; 3828aca35d17SMatthew G. Knepley { 3829aca35d17SMatthew G. Knepley PetscSF sfPoint, sfPointSub; 3830aca35d17SMatthew G. Knepley const PetscSFNode *remotePoints; 3831bdcf2095SMatthew G. Knepley PetscSFNode *sremotePoints, *newLocalPoints, *newOwners; 3832aca35d17SMatthew G. Knepley const PetscInt *localPoints; 3833bdcf2095SMatthew G. Knepley PetscInt *slocalPoints; 383449c26ae4SMatthew G. Knepley PetscInt numRoots, numLeaves, numSubRoots = numSubCells + numSubFaces + numSubVertices, numSubLeaves = 0, l, sl, ll, pStart, pEnd, p, vStart, vEnd; 3835bdcf2095SMatthew G. Knepley PetscMPIInt rank; 3836aca35d17SMatthew G. Knepley 38379566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)dm), &rank)); 38389566063dSJacob Faibussowitsch PetscCall(DMGetPointSF(dm, &sfPoint)); 38399566063dSJacob Faibussowitsch PetscCall(DMGetPointSF(subdm, &sfPointSub)); 38409566063dSJacob Faibussowitsch PetscCall(DMPlexGetChart(dm, &pStart, &pEnd)); 38419566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthStratum(dm, 0, &vStart, &vEnd)); 38429566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(sfPoint, &numRoots, &numLeaves, &localPoints, &remotePoints)); 3843aca35d17SMatthew G. Knepley if (numRoots >= 0) { 3844aca35d17SMatthew G. Knepley /* Only vertices should be shared */ 38459566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(pEnd - pStart, &newLocalPoints, numRoots, &newOwners)); 3846bdcf2095SMatthew G. Knepley for (p = 0; p < pEnd - pStart; ++p) { 3847bdcf2095SMatthew G. Knepley newLocalPoints[p].rank = -2; 3848bdcf2095SMatthew G. Knepley newLocalPoints[p].index = -2; 3849bdcf2095SMatthew G. Knepley } 38509e0823b2SMatthew G. Knepley /* Set subleaves */ 3851aca35d17SMatthew G. Knepley for (l = 0; l < numLeaves; ++l) { 3852aca35d17SMatthew G. Knepley const PetscInt point = localPoints[l]; 3853bdcf2095SMatthew G. Knepley const PetscInt subPoint = DMPlexFilterPoint_Internal(point, firstSubVertex, numSubVertices, subVertices); 3854aca35d17SMatthew G. Knepley 385563a3b9bcSJacob Faibussowitsch PetscCheck(!(point < vStart) || !(point >= vEnd), PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Should not be mapping anything but vertices, %" PetscInt_FMT, point); 3856bdcf2095SMatthew G. Knepley if (subPoint < 0) continue; 3857bdcf2095SMatthew G. Knepley newLocalPoints[point - pStart].rank = rank; 3858bdcf2095SMatthew G. Knepley newLocalPoints[point - pStart].index = subPoint; 3859bdcf2095SMatthew G. Knepley ++numSubLeaves; 3860aca35d17SMatthew G. Knepley } 38619e0823b2SMatthew G. Knepley /* Must put in owned subpoints */ 38629e0823b2SMatthew G. Knepley for (p = pStart; p < pEnd; ++p) { 38639e0823b2SMatthew G. Knepley const PetscInt subPoint = DMPlexFilterPoint_Internal(p, firstSubVertex, numSubVertices, subVertices); 38649e0823b2SMatthew G. Knepley 38659e0823b2SMatthew G. Knepley if (subPoint < 0) { 38669e0823b2SMatthew G. Knepley newOwners[p - pStart].rank = -3; 38679e0823b2SMatthew G. Knepley newOwners[p - pStart].index = -3; 38689e0823b2SMatthew G. Knepley } else { 38699e0823b2SMatthew G. Knepley newOwners[p - pStart].rank = rank; 38709e0823b2SMatthew G. Knepley newOwners[p - pStart].index = subPoint; 38719e0823b2SMatthew G. Knepley } 3872bdcf2095SMatthew G. Knepley } 38739566063dSJacob Faibussowitsch PetscCall(PetscSFReduceBegin(sfPoint, MPIU_2INT, newLocalPoints, newOwners, MPI_MAXLOC)); 38749566063dSJacob Faibussowitsch PetscCall(PetscSFReduceEnd(sfPoint, MPIU_2INT, newLocalPoints, newOwners, MPI_MAXLOC)); 38759566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(sfPoint, MPIU_2INT, newOwners, newLocalPoints, MPI_REPLACE)); 38769566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(sfPoint, MPIU_2INT, newOwners, newLocalPoints, MPI_REPLACE)); 38779566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(numSubLeaves, &slocalPoints)); 38789566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(numSubLeaves, &sremotePoints)); 387949c26ae4SMatthew G. Knepley for (l = 0, sl = 0, ll = 0; l < numLeaves; ++l) { 3880bdcf2095SMatthew G. Knepley const PetscInt point = localPoints[l]; 3881bdcf2095SMatthew G. Knepley const PetscInt subPoint = DMPlexFilterPoint_Internal(point, firstSubVertex, numSubVertices, subVertices); 3882aca35d17SMatthew G. Knepley 3883aca35d17SMatthew G. Knepley if (subPoint < 0) continue; 38849371c9d4SSatish Balay if (newLocalPoints[point].rank == rank) { 38859371c9d4SSatish Balay ++ll; 38869371c9d4SSatish Balay continue; 38879371c9d4SSatish Balay } 3888aca35d17SMatthew G. Knepley slocalPoints[sl] = subPoint; 3889bdcf2095SMatthew G. Knepley sremotePoints[sl].rank = newLocalPoints[point].rank; 3890bdcf2095SMatthew G. Knepley sremotePoints[sl].index = newLocalPoints[point].index; 389163a3b9bcSJacob Faibussowitsch PetscCheck(sremotePoints[sl].rank >= 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid remote rank for local point %" PetscInt_FMT, point); 389263a3b9bcSJacob Faibussowitsch PetscCheck(sremotePoints[sl].index >= 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid remote subpoint for local point %" PetscInt_FMT, point); 3893aca35d17SMatthew G. Knepley ++sl; 3894aca35d17SMatthew G. Knepley } 38959566063dSJacob Faibussowitsch PetscCall(PetscFree2(newLocalPoints, newOwners)); 38961dca8a05SBarry Smith PetscCheck(sl + ll == numSubLeaves, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Mismatch in number of subleaves %" PetscInt_FMT " + %" PetscInt_FMT " != %" PetscInt_FMT, sl, ll, numSubLeaves); 38979566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(sfPointSub, numSubRoots, sl, slocalPoints, PETSC_OWN_POINTER, sremotePoints, PETSC_OWN_POINTER)); 3898aca35d17SMatthew G. Knepley } 3899aca35d17SMatthew G. Knepley } 3900aca35d17SMatthew G. Knepley CHKMEMQ; 3901766ab985SMatthew G. Knepley /* Cleanup */ 39029566063dSJacob Faibussowitsch if (subvertexIS) PetscCall(ISRestoreIndices(subvertexIS, &subVertices)); 39039566063dSJacob Faibussowitsch PetscCall(ISDestroy(&subvertexIS)); 39049566063dSJacob Faibussowitsch PetscCall(PetscFree(subCells)); 39053ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3906766ab985SMatthew G. Knepley } 3907766ab985SMatthew G. Knepley 3908d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexCreateCohesiveSubmesh_Interpolated(DM dm, const char labelname[], PetscInt value, DM subdm) 3909d71ae5a4SJacob Faibussowitsch { 39103982b651SMatthew G. Knepley DMLabel label = NULL; 3911766ab985SMatthew G. Knepley 3912766ab985SMatthew G. Knepley PetscFunctionBegin; 39139566063dSJacob Faibussowitsch if (labelname) PetscCall(DMGetLabel(dm, labelname, &label)); 39149566063dSJacob Faibussowitsch PetscCall(DMPlexCreateSubmeshGeneric_Interpolated(dm, label, value, PETSC_FALSE, PETSC_TRUE, 1, subdm)); 39153ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3916766ab985SMatthew G. Knepley } 3917766ab985SMatthew G. Knepley 3918c08575a3SMatthew G. Knepley /*@C 391920f4b53cSBarry Smith DMPlexCreateCohesiveSubmesh - Extract from a mesh with cohesive cells the hypersurface defined by one face of the cells. Optionally, a label can be given to restrict the cells. 3920766ab985SMatthew G. Knepley 3921766ab985SMatthew G. Knepley Input Parameters: 3922766ab985SMatthew G. Knepley + dm - The original mesh 392327c04023SMatthew G. Knepley . hasLagrange - The mesh has Lagrange unknowns in the cohesive cells 392420f4b53cSBarry Smith . label - A label name, or `NULL` 392527c04023SMatthew G. Knepley - value - A label value 3926766ab985SMatthew G. Knepley 3927766ab985SMatthew G. Knepley Output Parameter: 3928766ab985SMatthew G. Knepley . subdm - The surface mesh 3929766ab985SMatthew G. Knepley 3930766ab985SMatthew G. Knepley Level: developer 3931766ab985SMatthew G. Knepley 393220f4b53cSBarry Smith Note: 393320f4b53cSBarry Smith This function produces a `DMLabel` mapping original points in the submesh to their depth. This can be obtained using `DMPlexGetSubpointMap()`. 393420f4b53cSBarry Smith 39351cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexGetSubpointMap()`, `DMPlexCreateSubmesh()` 3936c08575a3SMatthew G. Knepley @*/ 3937d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexCreateCohesiveSubmesh(DM dm, PetscBool hasLagrange, const char label[], PetscInt value, DM *subdm) 3938d71ae5a4SJacob Faibussowitsch { 3939c0e8cf5fSMatthew G. Knepley PetscInt dim, cdim, depth; 3940766ab985SMatthew G. Knepley 3941766ab985SMatthew G. Knepley PetscFunctionBegin; 3942766ab985SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 39434f572ea9SToby Isaac PetscAssertPointer(subdm, 5); 39449566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 39459566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepth(dm, &depth)); 39469566063dSJacob Faibussowitsch PetscCall(DMCreate(PetscObjectComm((PetscObject)dm), subdm)); 39479566063dSJacob Faibussowitsch PetscCall(DMSetType(*subdm, DMPLEX)); 39489566063dSJacob Faibussowitsch PetscCall(DMSetDimension(*subdm, dim - 1)); 39499566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDim(dm, &cdim)); 39509566063dSJacob Faibussowitsch PetscCall(DMSetCoordinateDim(*subdm, cdim)); 3951766ab985SMatthew G. Knepley if (depth == dim) { 39529566063dSJacob Faibussowitsch PetscCall(DMPlexCreateCohesiveSubmesh_Interpolated(dm, label, value, *subdm)); 3953766ab985SMatthew G. Knepley } else { 39549566063dSJacob Faibussowitsch PetscCall(DMPlexCreateCohesiveSubmesh_Uninterpolated(dm, hasLagrange, label, value, *subdm)); 3955e6ccafaeSMatthew G Knepley } 39565de52c6dSVaclav Hapla PetscCall(DMPlexCopy_Internal(dm, PETSC_TRUE, PETSC_TRUE, *subdm)); 39573ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3958e6ccafaeSMatthew G Knepley } 3959e6ccafaeSMatthew G Knepley 3960bec263e5SMatthew G. Knepley /*@ 39610e18dc48SMatthew G. Knepley DMPlexReorderCohesiveSupports - Ensure that face supports for cohesive end caps are ordered 39620e18dc48SMatthew G. Knepley 39630e18dc48SMatthew G. Knepley Not Collective 39640e18dc48SMatthew G. Knepley 39650e18dc48SMatthew G. Knepley Input Parameter: 39660e18dc48SMatthew G. Knepley . dm - The `DM` containing cohesive cells 39670e18dc48SMatthew G. Knepley 39680e18dc48SMatthew G. Knepley Level: developer 39690e18dc48SMatthew G. Knepley 3970a4e35b19SJacob Faibussowitsch Note: 3971a4e35b19SJacob Faibussowitsch For the negative size (first) face, the cohesive cell should be first in the support, and for 3972a4e35b19SJacob Faibussowitsch the positive side (second) face, the cohesive cell should be second in the support. 39730e18dc48SMatthew G. Knepley 39740e18dc48SMatthew G. Knepley .seealso: `DMPlexConstructCohesiveCells()`, `DMPlexCreateCohesiveSubmesh()` 39750e18dc48SMatthew G. Knepley @*/ 39760e18dc48SMatthew G. Knepley PetscErrorCode DMPlexReorderCohesiveSupports(DM dm) 39770e18dc48SMatthew G. Knepley { 39780e18dc48SMatthew G. Knepley PetscInt dim, cStart, cEnd; 39790e18dc48SMatthew G. Knepley 39800e18dc48SMatthew G. Knepley PetscFunctionBegin; 39810e18dc48SMatthew G. Knepley PetscCall(DMGetDimension(dm, &dim)); 39820e18dc48SMatthew G. Knepley PetscCall(DMPlexGetTensorPrismBounds_Internal(dm, dim, &cStart, &cEnd)); 39830e18dc48SMatthew G. Knepley for (PetscInt c = cStart; c < cEnd; ++c) { 39840e18dc48SMatthew G. Knepley const PetscInt *cone; 39850e18dc48SMatthew G. Knepley PetscInt coneSize; 39860e18dc48SMatthew G. Knepley 39870e18dc48SMatthew G. Knepley PetscCall(DMPlexGetConeSize(dm, c, &coneSize)); 39880e18dc48SMatthew G. Knepley PetscCall(DMPlexGetCone(dm, c, &cone)); 39890e18dc48SMatthew G. Knepley PetscCheck(coneSize >= 2, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Hybrid cell %" PetscInt_FMT " cone size %" PetscInt_FMT " must be >= 2", c, coneSize); 39900e18dc48SMatthew G. Knepley for (PetscInt s = 0; s < 2; ++s) { 39910e18dc48SMatthew G. Knepley const PetscInt *supp; 39920e18dc48SMatthew G. Knepley PetscInt suppSize, newsupp[2]; 39930e18dc48SMatthew G. Knepley 39940e18dc48SMatthew G. Knepley PetscCall(DMPlexGetSupportSize(dm, cone[s], &suppSize)); 39950e18dc48SMatthew G. Knepley PetscCall(DMPlexGetSupport(dm, cone[s], &supp)); 39960e18dc48SMatthew G. Knepley if (suppSize == 2) { 39970e18dc48SMatthew G. Knepley /* Reorder hybrid end cap support */ 39980e18dc48SMatthew G. Knepley if (supp[s] == c) { 39990e18dc48SMatthew G. Knepley newsupp[0] = supp[1]; 40000e18dc48SMatthew G. Knepley newsupp[1] = supp[0]; 40010e18dc48SMatthew G. Knepley } else { 40020e18dc48SMatthew G. Knepley newsupp[0] = supp[0]; 40030e18dc48SMatthew G. Knepley newsupp[1] = supp[1]; 40040e18dc48SMatthew G. Knepley } 40050e18dc48SMatthew G. Knepley PetscCheck(newsupp[1 - s] == c, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Hybrid end cap %" PetscInt_FMT " support entry %" PetscInt_FMT " != %" PetscInt_FMT " hybrid cell", cone[s], newsupp[1 - s], c); 40060e18dc48SMatthew G. Knepley PetscCall(DMPlexSetSupport(dm, cone[s], newsupp)); 40070e18dc48SMatthew G. Knepley } 40080e18dc48SMatthew G. Knepley } 40090e18dc48SMatthew G. Knepley } 40100e18dc48SMatthew G. Knepley PetscFunctionReturn(PETSC_SUCCESS); 40110e18dc48SMatthew G. Knepley } 40120e18dc48SMatthew G. Knepley 40130e18dc48SMatthew G. Knepley /*@ 4014bec263e5SMatthew G. Knepley DMPlexFilter - Extract a subset of mesh cells defined by a label as a separate mesh 4015bec263e5SMatthew G. Knepley 4016bec263e5SMatthew G. Knepley Input Parameters: 4017bec263e5SMatthew G. Knepley + dm - The original mesh 401820f4b53cSBarry Smith . cellLabel - The `DMLabel` marking cells contained in the new mesh 4019bec263e5SMatthew G. Knepley - value - The label value to use 4020bec263e5SMatthew G. Knepley 4021bec263e5SMatthew G. Knepley Output Parameter: 4022bec263e5SMatthew G. Knepley . subdm - The new mesh 4023bec263e5SMatthew G. Knepley 4024bec263e5SMatthew G. Knepley Level: developer 4025bec263e5SMatthew G. Knepley 402620f4b53cSBarry Smith Note: 402720f4b53cSBarry Smith This function produces a `DMLabel` mapping original points in the submesh to their depth. This can be obtained using `DMPlexGetSubpointMap()`. 402820f4b53cSBarry Smith 40291cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexGetSubpointMap()`, `DMGetLabel()`, `DMLabelSetValue()`, `DMPlexCreateSubmesh()` 4030bec263e5SMatthew G. Knepley @*/ 4031d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexFilter(DM dm, DMLabel cellLabel, PetscInt value, DM *subdm) 4032d71ae5a4SJacob Faibussowitsch { 4033b47cd10cSMatthew G. Knepley PetscInt dim, overlap; 4034bec263e5SMatthew G. Knepley 4035bec263e5SMatthew G. Knepley PetscFunctionBegin; 4036bec263e5SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 40374f572ea9SToby Isaac PetscAssertPointer(subdm, 4); 40389566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 40399566063dSJacob Faibussowitsch PetscCall(DMCreate(PetscObjectComm((PetscObject)dm), subdm)); 40409566063dSJacob Faibussowitsch PetscCall(DMSetType(*subdm, DMPLEX)); 4041bec263e5SMatthew G. Knepley /* Extract submesh in place, could be empty on some procs, could have inconsistency if procs do not both extract a shared cell */ 40429566063dSJacob Faibussowitsch PetscCall(DMPlexCreateSubmeshGeneric_Interpolated(dm, cellLabel, value, PETSC_FALSE, PETSC_FALSE, 0, *subdm)); 40435de52c6dSVaclav Hapla PetscCall(DMPlexCopy_Internal(dm, PETSC_TRUE, PETSC_TRUE, *subdm)); 4044b47cd10cSMatthew G. Knepley // It is possible to obtain a surface mesh where some faces are in SF 4045b47cd10cSMatthew G. Knepley // We should either mark the mesh as having an overlap, or delete these from the SF 4046b47cd10cSMatthew G. Knepley PetscCall(DMPlexGetOverlap(dm, &overlap)); 4047b47cd10cSMatthew G. Knepley if (!overlap) { 4048b47cd10cSMatthew G. Knepley PetscSF sf; 4049b47cd10cSMatthew G. Knepley const PetscInt *leaves; 4050b47cd10cSMatthew G. Knepley PetscInt cStart, cEnd, Nl; 4051b47cd10cSMatthew G. Knepley PetscBool hasSubcell = PETSC_FALSE, ghasSubcell; 4052b47cd10cSMatthew G. Knepley 4053b47cd10cSMatthew G. Knepley PetscCall(DMPlexGetHeightStratum(*subdm, 0, &cStart, &cEnd)); 4054b47cd10cSMatthew G. Knepley PetscCall(DMGetPointSF(*subdm, &sf)); 4055b47cd10cSMatthew G. Knepley PetscCall(PetscSFGetGraph(sf, NULL, &Nl, &leaves, NULL)); 4056b47cd10cSMatthew G. Knepley for (PetscInt l = 0; l < Nl; ++l) { 4057b47cd10cSMatthew G. Knepley const PetscInt point = leaves ? leaves[l] : l; 4058b47cd10cSMatthew G. Knepley 4059b47cd10cSMatthew G. Knepley if (point >= cStart && point < cEnd) { 4060b47cd10cSMatthew G. Knepley hasSubcell = PETSC_TRUE; 4061b47cd10cSMatthew G. Knepley break; 4062b47cd10cSMatthew G. Knepley } 4063b47cd10cSMatthew G. Knepley } 4064b47cd10cSMatthew G. Knepley PetscCall(MPIU_Allreduce(&hasSubcell, &ghasSubcell, 1, MPIU_BOOL, MPI_LOR, PetscObjectComm((PetscObject)dm))); 4065b47cd10cSMatthew G. Knepley if (ghasSubcell) PetscCall(DMPlexSetOverlap(*subdm, NULL, 1)); 4066b47cd10cSMatthew G. Knepley } 40673ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4068bec263e5SMatthew G. Knepley } 4069bec263e5SMatthew G. Knepley 407064beef6dSMatthew G. Knepley /*@ 407120f4b53cSBarry Smith DMPlexGetSubpointMap - Returns a `DMLabel` with point dimension as values 407264beef6dSMatthew G. Knepley 407364beef6dSMatthew G. Knepley Input Parameter: 407420f4b53cSBarry Smith . dm - The submesh `DM` 407564beef6dSMatthew G. Knepley 407664beef6dSMatthew G. Knepley Output Parameter: 407720f4b53cSBarry Smith . subpointMap - The `DMLabel` of all the points from the original mesh in this submesh, or `NULL` if this is not a submesh 407864beef6dSMatthew G. Knepley 407964beef6dSMatthew G. Knepley Level: developer 408064beef6dSMatthew G. Knepley 40811cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexCreateSubmesh()`, `DMPlexGetSubpointIS()` 408264beef6dSMatthew G. Knepley @*/ 4083d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexGetSubpointMap(DM dm, DMLabel *subpointMap) 4084d71ae5a4SJacob Faibussowitsch { 4085e6ccafaeSMatthew G Knepley PetscFunctionBegin; 4086e6ccafaeSMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 40874f572ea9SToby Isaac PetscAssertPointer(subpointMap, 2); 408865663942SMatthew G. Knepley *subpointMap = ((DM_Plex *)dm->data)->subpointMap; 40893ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4090e6ccafaeSMatthew G Knepley } 4091e6ccafaeSMatthew G Knepley 4092c08575a3SMatthew G. Knepley /*@ 409320f4b53cSBarry Smith DMPlexSetSubpointMap - Sets the `DMLabel` with point dimension as values 4094c08575a3SMatthew G. Knepley 4095c08575a3SMatthew G. Knepley Input Parameters: 409620f4b53cSBarry Smith + dm - The submesh `DM` 409720f4b53cSBarry Smith - subpointMap - The `DMLabel` of all the points from the original mesh in this submesh 4098c08575a3SMatthew G. Knepley 4099c08575a3SMatthew G. Knepley Level: developer 4100c08575a3SMatthew G. Knepley 410120f4b53cSBarry Smith Note: 410220f4b53cSBarry Smith Should normally not be called by the user, since it is set in `DMPlexCreateSubmesh()` 410320f4b53cSBarry Smith 41041cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexCreateSubmesh()`, `DMPlexGetSubpointIS()` 4105c08575a3SMatthew G. Knepley @*/ 4106d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexSetSubpointMap(DM dm, DMLabel subpointMap) 4107d71ae5a4SJacob Faibussowitsch { 4108e6ccafaeSMatthew G Knepley DM_Plex *mesh = (DM_Plex *)dm->data; 4109285d324eSMatthew G. Knepley DMLabel tmp; 4110e6ccafaeSMatthew G Knepley 4111e6ccafaeSMatthew G Knepley PetscFunctionBegin; 4112e6ccafaeSMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 4113285d324eSMatthew G. Knepley tmp = mesh->subpointMap; 4114e6ccafaeSMatthew G Knepley mesh->subpointMap = subpointMap; 41159566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)mesh->subpointMap)); 41169566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&tmp)); 41173ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4118e6ccafaeSMatthew G Knepley } 4119e6ccafaeSMatthew G Knepley 4120d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexCreateSubpointIS_Internal(DM dm, IS *subpointIS) 4121d71ae5a4SJacob Faibussowitsch { 412297d8846cSMatthew Knepley DMLabel spmap; 412397d8846cSMatthew Knepley PetscInt depth, d; 412497d8846cSMatthew Knepley 412597d8846cSMatthew Knepley PetscFunctionBegin; 41269566063dSJacob Faibussowitsch PetscCall(DMPlexGetSubpointMap(dm, &spmap)); 41279566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepth(dm, &depth)); 412897d8846cSMatthew Knepley if (spmap && depth >= 0) { 412997d8846cSMatthew Knepley DM_Plex *mesh = (DM_Plex *)dm->data; 413097d8846cSMatthew Knepley PetscInt *points, *depths; 413197d8846cSMatthew Knepley PetscInt pStart, pEnd, p, off; 413297d8846cSMatthew Knepley 41339566063dSJacob Faibussowitsch PetscCall(DMPlexGetChart(dm, &pStart, &pEnd)); 413463a3b9bcSJacob Faibussowitsch PetscCheck(!pStart, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Submeshes must start the point numbering at 0, not %" PetscInt_FMT, pStart); 41359566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(pEnd, &points)); 41369566063dSJacob Faibussowitsch PetscCall(DMGetWorkArray(dm, depth + 1, MPIU_INT, &depths)); 413797d8846cSMatthew Knepley depths[0] = depth; 413897d8846cSMatthew Knepley depths[1] = 0; 4139ad540459SPierre Jolivet for (d = 2; d <= depth; ++d) depths[d] = depth + 1 - d; 414097d8846cSMatthew Knepley for (d = 0, off = 0; d <= depth; ++d) { 414197d8846cSMatthew Knepley const PetscInt dep = depths[d]; 414297d8846cSMatthew Knepley PetscInt depStart, depEnd, n; 414397d8846cSMatthew Knepley 41449566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthStratum(dm, dep, &depStart, &depEnd)); 41459566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumSize(spmap, dep, &n)); 414697d8846cSMatthew Knepley if (((d < 2) && (depth > 1)) || (d == 1)) { /* Only check vertices and cells for now since the map is broken for others */ 414763a3b9bcSJacob Faibussowitsch PetscCheck(n == depEnd - depStart, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "The number of mapped submesh points %" PetscInt_FMT " at depth %" PetscInt_FMT " should be %" PetscInt_FMT, n, dep, depEnd - depStart); 414897d8846cSMatthew Knepley } else { 414997d8846cSMatthew Knepley if (!n) { 415097d8846cSMatthew Knepley if (d == 0) { 415197d8846cSMatthew Knepley /* Missing cells */ 415297d8846cSMatthew Knepley for (p = 0; p < depEnd - depStart; ++p, ++off) points[off] = -1; 415397d8846cSMatthew Knepley } else { 415497d8846cSMatthew Knepley /* Missing faces */ 415597d8846cSMatthew Knepley for (p = 0; p < depEnd - depStart; ++p, ++off) points[off] = PETSC_MAX_INT; 415697d8846cSMatthew Knepley } 415797d8846cSMatthew Knepley } 415897d8846cSMatthew Knepley } 415997d8846cSMatthew Knepley if (n) { 416097d8846cSMatthew Knepley IS is; 416197d8846cSMatthew Knepley const PetscInt *opoints; 416297d8846cSMatthew Knepley 41639566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(spmap, dep, &is)); 41649566063dSJacob Faibussowitsch PetscCall(ISGetIndices(is, &opoints)); 416597d8846cSMatthew Knepley for (p = 0; p < n; ++p, ++off) points[off] = opoints[p]; 41669566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(is, &opoints)); 41679566063dSJacob Faibussowitsch PetscCall(ISDestroy(&is)); 416897d8846cSMatthew Knepley } 416997d8846cSMatthew Knepley } 41709566063dSJacob Faibussowitsch PetscCall(DMRestoreWorkArray(dm, depth + 1, MPIU_INT, &depths)); 417163a3b9bcSJacob Faibussowitsch PetscCheck(off == pEnd, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "The number of mapped submesh points %" PetscInt_FMT " should be %" PetscInt_FMT, off, pEnd); 41729566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, pEnd, points, PETSC_OWN_POINTER, subpointIS)); 41739566063dSJacob Faibussowitsch PetscCall(PetscObjectStateGet((PetscObject)spmap, &mesh->subpointState)); 417497d8846cSMatthew Knepley } 41753ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 417697d8846cSMatthew Knepley } 417797d8846cSMatthew Knepley 417864beef6dSMatthew G. Knepley /*@ 417920f4b53cSBarry Smith DMPlexGetSubpointIS - Returns an `IS` covering the entire subdm chart with the original points as data 4180e6ccafaeSMatthew G Knepley 4181e6ccafaeSMatthew G Knepley Input Parameter: 418220f4b53cSBarry Smith . dm - The submesh `DM` 4183e6ccafaeSMatthew G Knepley 4184e6ccafaeSMatthew G Knepley Output Parameter: 418520f4b53cSBarry Smith . subpointIS - The `IS` of all the points from the original mesh in this submesh, or `NULL` if this is not a submesh 418664beef6dSMatthew G. Knepley 418764beef6dSMatthew G. Knepley Level: developer 418864beef6dSMatthew G. Knepley 418920f4b53cSBarry Smith Note: 419020f4b53cSBarry Smith This `IS` is guaranteed to be sorted by the construction of the submesh 419120f4b53cSBarry Smith 41921cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexCreateSubmesh()`, `DMPlexGetSubpointMap()` 419364beef6dSMatthew G. Knepley @*/ 4194d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexGetSubpointIS(DM dm, IS *subpointIS) 4195d71ae5a4SJacob Faibussowitsch { 419697d8846cSMatthew Knepley DM_Plex *mesh = (DM_Plex *)dm->data; 419797d8846cSMatthew Knepley DMLabel spmap; 419897d8846cSMatthew Knepley PetscObjectState state; 4199e6ccafaeSMatthew G Knepley 4200e6ccafaeSMatthew G Knepley PetscFunctionBegin; 4201e6ccafaeSMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 42024f572ea9SToby Isaac PetscAssertPointer(subpointIS, 2); 42039566063dSJacob Faibussowitsch PetscCall(DMPlexGetSubpointMap(dm, &spmap)); 42049566063dSJacob Faibussowitsch PetscCall(PetscObjectStateGet((PetscObject)spmap, &state)); 42059566063dSJacob Faibussowitsch if (state != mesh->subpointState || !mesh->subpointIS) PetscCall(DMPlexCreateSubpointIS_Internal(dm, &mesh->subpointIS)); 420697d8846cSMatthew Knepley *subpointIS = mesh->subpointIS; 42073ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4208e6ccafaeSMatthew G Knepley } 4209559a1558SMatthew G. Knepley 4210559a1558SMatthew G. Knepley /*@ 421120f4b53cSBarry Smith DMGetEnclosureRelation - Get the relationship between `dmA` and `dmB` 4212559a1558SMatthew G. Knepley 4213559a1558SMatthew G. Knepley Input Parameters: 421420f4b53cSBarry Smith + dmA - The first `DM` 421520f4b53cSBarry Smith - dmB - The second `DM` 4216559a1558SMatthew G. Knepley 4217559a1558SMatthew G. Knepley Output Parameter: 421820f4b53cSBarry Smith . rel - The relation of `dmA` to `dmB` 4219559a1558SMatthew G. Knepley 4220a6e0b375SMatthew G. Knepley Level: intermediate 4221559a1558SMatthew G. Knepley 42221cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMGetEnclosurePoint()` 4223559a1558SMatthew G. Knepley @*/ 4224d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetEnclosureRelation(DM dmA, DM dmB, DMEnclosureType *rel) 4225d71ae5a4SJacob Faibussowitsch { 4226a6e0b375SMatthew G. Knepley DM plexA, plexB, sdm; 4227559a1558SMatthew G. Knepley DMLabel spmap; 4228a6e0b375SMatthew G. Knepley PetscInt pStartA, pEndA, pStartB, pEndB, NpA, NpB; 4229559a1558SMatthew G. Knepley 423044171101SMatthew G. Knepley PetscFunctionBegin; 42314f572ea9SToby Isaac PetscAssertPointer(rel, 3); 4232a6e0b375SMatthew G. Knepley *rel = DM_ENC_NONE; 42333ba16761SJacob Faibussowitsch if (!dmA || !dmB) PetscFunctionReturn(PETSC_SUCCESS); 4234a6e0b375SMatthew G. Knepley PetscValidHeaderSpecific(dmA, DM_CLASSID, 1); 4235064a246eSJacob Faibussowitsch PetscValidHeaderSpecific(dmB, DM_CLASSID, 2); 42369371c9d4SSatish Balay if (dmA == dmB) { 42379371c9d4SSatish Balay *rel = DM_ENC_EQUALITY; 42383ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 42399371c9d4SSatish Balay } 42409566063dSJacob Faibussowitsch PetscCall(DMConvert(dmA, DMPLEX, &plexA)); 42419566063dSJacob Faibussowitsch PetscCall(DMConvert(dmB, DMPLEX, &plexB)); 42429566063dSJacob Faibussowitsch PetscCall(DMPlexGetChart(plexA, &pStartA, &pEndA)); 42439566063dSJacob Faibussowitsch PetscCall(DMPlexGetChart(plexB, &pStartB, &pEndB)); 4244a6e0b375SMatthew G. Knepley /* Assumption 1: subDMs have smaller charts than the DMs that they originate from 4245a6e0b375SMatthew G. Knepley - The degenerate case of a subdomain which includes all of the domain on some process can be treated as equality */ 4246a6e0b375SMatthew G. Knepley if ((pStartA == pStartB) && (pEndA == pEndB)) { 4247a6e0b375SMatthew G. Knepley *rel = DM_ENC_EQUALITY; 4248a6e0b375SMatthew G. Knepley goto end; 4249559a1558SMatthew G. Knepley } 4250a6e0b375SMatthew G. Knepley NpA = pEndA - pStartA; 4251a6e0b375SMatthew G. Knepley NpB = pEndB - pStartB; 4252a6e0b375SMatthew G. Knepley if (NpA == NpB) goto end; 4253a6e0b375SMatthew G. Knepley sdm = NpA > NpB ? plexB : plexA; /* The other is the original, enclosing dm */ 42549566063dSJacob Faibussowitsch PetscCall(DMPlexGetSubpointMap(sdm, &spmap)); 4255a6e0b375SMatthew G. Knepley if (!spmap) goto end; 4256a6e0b375SMatthew G. Knepley /* TODO Check the space mapped to by subpointMap is same size as dm */ 4257a6e0b375SMatthew G. Knepley if (NpA > NpB) { 4258a6e0b375SMatthew G. Knepley *rel = DM_ENC_SUPERMESH; 4259a6e0b375SMatthew G. Knepley } else { 4260a6e0b375SMatthew G. Knepley *rel = DM_ENC_SUBMESH; 4261a6e0b375SMatthew G. Knepley } 4262a6e0b375SMatthew G. Knepley end: 42639566063dSJacob Faibussowitsch PetscCall(DMDestroy(&plexA)); 42649566063dSJacob Faibussowitsch PetscCall(DMDestroy(&plexB)); 42653ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4266559a1558SMatthew G. Knepley } 426744171101SMatthew G. Knepley 426844171101SMatthew G. Knepley /*@ 426920f4b53cSBarry Smith DMGetEnclosurePoint - Get the point `pA` in `dmA` which corresponds to the point `pB` in `dmB` 427044171101SMatthew G. Knepley 427144171101SMatthew G. Knepley Input Parameters: 427220f4b53cSBarry Smith + dmA - The first `DM` 427320f4b53cSBarry Smith . dmB - The second `DM` 427420f4b53cSBarry Smith . etype - The type of enclosure relation that `dmA` has to `dmB` 427520f4b53cSBarry Smith - pB - A point of `dmB` 427644171101SMatthew G. Knepley 427744171101SMatthew G. Knepley Output Parameter: 427820f4b53cSBarry Smith . pA - The corresponding point of `dmA` 427944171101SMatthew G. Knepley 4280a6e0b375SMatthew G. Knepley Level: intermediate 428144171101SMatthew G. Knepley 42821cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMGetEnclosureRelation()` 428344171101SMatthew G. Knepley @*/ 4284d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetEnclosurePoint(DM dmA, DM dmB, DMEnclosureType etype, PetscInt pB, PetscInt *pA) 4285d71ae5a4SJacob Faibussowitsch { 4286a6e0b375SMatthew G. Knepley DM sdm; 4287a6e0b375SMatthew G. Knepley IS subpointIS; 4288a6e0b375SMatthew G. Knepley const PetscInt *subpoints; 4289a6e0b375SMatthew G. Knepley PetscInt numSubpoints; 429044171101SMatthew G. Knepley 429144171101SMatthew G. Knepley PetscFunctionBegin; 4292a6e0b375SMatthew G. Knepley /* TODO Cache the IS, making it look like an index */ 4293a6e0b375SMatthew G. Knepley switch (etype) { 4294a6e0b375SMatthew G. Knepley case DM_ENC_SUPERMESH: 4295a6e0b375SMatthew G. Knepley sdm = dmB; 42969566063dSJacob Faibussowitsch PetscCall(DMPlexGetSubpointIS(sdm, &subpointIS)); 42979566063dSJacob Faibussowitsch PetscCall(ISGetIndices(subpointIS, &subpoints)); 4298a6e0b375SMatthew G. Knepley *pA = subpoints[pB]; 42999566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(subpointIS, &subpoints)); 4300a6e0b375SMatthew G. Knepley break; 4301a6e0b375SMatthew G. Knepley case DM_ENC_SUBMESH: 4302a6e0b375SMatthew G. Knepley sdm = dmA; 43039566063dSJacob Faibussowitsch PetscCall(DMPlexGetSubpointIS(sdm, &subpointIS)); 43049566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(subpointIS, &numSubpoints)); 43059566063dSJacob Faibussowitsch PetscCall(ISGetIndices(subpointIS, &subpoints)); 43069566063dSJacob Faibussowitsch PetscCall(PetscFindInt(pB, numSubpoints, subpoints, pA)); 4307a6e0b375SMatthew G. Knepley if (*pA < 0) { 43089566063dSJacob Faibussowitsch PetscCall(DMViewFromOptions(dmA, NULL, "-dm_enc_A_view")); 43099566063dSJacob Faibussowitsch PetscCall(DMViewFromOptions(dmB, NULL, "-dm_enc_B_view")); 431063a3b9bcSJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Point %" PetscInt_FMT " not found in submesh", pB); 4311a6e0b375SMatthew G. Knepley } 43129566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(subpointIS, &subpoints)); 4313a6e0b375SMatthew G. Knepley break; 4314a6e0b375SMatthew G. Knepley case DM_ENC_EQUALITY: 4315d71ae5a4SJacob Faibussowitsch case DM_ENC_NONE: 4316d71ae5a4SJacob Faibussowitsch *pA = pB; 4317d71ae5a4SJacob Faibussowitsch break; 43189371c9d4SSatish Balay case DM_ENC_UNKNOWN: { 4319a6e0b375SMatthew G. Knepley DMEnclosureType enc; 432044171101SMatthew G. Knepley 43219566063dSJacob Faibussowitsch PetscCall(DMGetEnclosureRelation(dmA, dmB, &enc)); 43229566063dSJacob Faibussowitsch PetscCall(DMGetEnclosurePoint(dmA, dmB, enc, pB, pA)); 43239371c9d4SSatish Balay } break; 4324d71ae5a4SJacob Faibussowitsch default: 4325d71ae5a4SJacob Faibussowitsch SETERRQ(PetscObjectComm((PetscObject)dmA), PETSC_ERR_ARG_OUTOFRANGE, "Invalid enclosure type %d", (int)etype); 432644171101SMatthew G. Knepley } 43273ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 432844171101SMatthew G. Knepley } 4329