1af0996ceSBarry Smith #include <petsc/private/dmpleximpl.h> /*I "petscdmplex.h" I*/ 2c58f1c22SToby Isaac #include <petsc/private/dmlabelimpl.h> /*I "petscdmlabel.h" I*/ 30c312b8eSJed Brown #include <petscsf.h> 4e6ccafaeSMatthew G Knepley 5d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexCellIsHybrid_Internal(DM dm, PetscInt p, PetscBool *isHybrid) 6d71ae5a4SJacob Faibussowitsch { 7412e9a14SMatthew G. Knepley DMPolytopeType ct; 8412e9a14SMatthew G. Knepley 9412e9a14SMatthew G. Knepley PetscFunctionBegin; 109566063dSJacob Faibussowitsch PetscCall(DMPlexGetCellType(dm, p, &ct)); 11412e9a14SMatthew G. Knepley switch (ct) { 12412e9a14SMatthew G. Knepley case DM_POLYTOPE_POINT_PRISM_TENSOR: 13412e9a14SMatthew G. Knepley case DM_POLYTOPE_SEG_PRISM_TENSOR: 14412e9a14SMatthew G. Knepley case DM_POLYTOPE_TRI_PRISM_TENSOR: 15d71ae5a4SJacob Faibussowitsch case DM_POLYTOPE_QUAD_PRISM_TENSOR: 16d71ae5a4SJacob Faibussowitsch *isHybrid = PETSC_TRUE; 17d71ae5a4SJacob Faibussowitsch break; 18d71ae5a4SJacob Faibussowitsch default: 19d71ae5a4SJacob Faibussowitsch *isHybrid = PETSC_FALSE; 20d71ae5a4SJacob Faibussowitsch break; 21412e9a14SMatthew G. Knepley } 22412e9a14SMatthew G. Knepley PetscFunctionReturn(0); 23412e9a14SMatthew G. Knepley } 24412e9a14SMatthew G. Knepley 25d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexGetTensorPrismBounds_Internal(DM dm, PetscInt dim, PetscInt *cStart, PetscInt *cEnd) 26d71ae5a4SJacob Faibussowitsch { 27412e9a14SMatthew G. Knepley DMLabel ctLabel; 28412e9a14SMatthew G. Knepley 29412e9a14SMatthew G. Knepley PetscFunctionBegin; 30412e9a14SMatthew G. Knepley if (cStart) *cStart = -1; 31412e9a14SMatthew G. Knepley if (cEnd) *cEnd = -1; 329566063dSJacob Faibussowitsch PetscCall(DMPlexGetCellTypeLabel(dm, &ctLabel)); 33412e9a14SMatthew G. Knepley switch (dim) { 34d71ae5a4SJacob Faibussowitsch case 1: 35d71ae5a4SJacob Faibussowitsch PetscCall(DMLabelGetStratumBounds(ctLabel, DM_POLYTOPE_POINT_PRISM_TENSOR, cStart, cEnd)); 36d71ae5a4SJacob Faibussowitsch break; 37d71ae5a4SJacob Faibussowitsch case 2: 38d71ae5a4SJacob Faibussowitsch PetscCall(DMLabelGetStratumBounds(ctLabel, DM_POLYTOPE_SEG_PRISM_TENSOR, cStart, cEnd)); 39d71ae5a4SJacob Faibussowitsch break; 40412e9a14SMatthew G. Knepley case 3: 419566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumBounds(ctLabel, DM_POLYTOPE_TRI_PRISM_TENSOR, cStart, cEnd)); 429566063dSJacob Faibussowitsch if (*cStart < 0) PetscCall(DMLabelGetStratumBounds(ctLabel, DM_POLYTOPE_QUAD_PRISM_TENSOR, cStart, cEnd)); 43412e9a14SMatthew G. Knepley break; 44d71ae5a4SJacob Faibussowitsch default: 45d71ae5a4SJacob Faibussowitsch PetscFunctionReturn(0); 46412e9a14SMatthew G. Knepley } 47412e9a14SMatthew G. Knepley PetscFunctionReturn(0); 48412e9a14SMatthew G. Knepley } 49412e9a14SMatthew G. Knepley 50d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexMarkBoundaryFaces_Internal(DM dm, PetscInt val, PetscInt cellHeight, DMLabel label) 51d71ae5a4SJacob Faibussowitsch { 52*429fa399SMatthew G. Knepley PetscSF sf; 53*429fa399SMatthew G. Knepley const PetscInt *rootdegree, *leaves; 54*429fa399SMatthew G. Knepley PetscInt overlap, Nr = -1, Nl, pStart, fStart, fEnd; 5530560a7bSMatthew G. Knepley 5630560a7bSMatthew G. Knepley PetscFunctionBegin; 57*429fa399SMatthew G. Knepley PetscCall(DMGetPointSF(dm, &sf)); 58*429fa399SMatthew G. Knepley PetscCall(DMPlexGetOverlap(dm, &overlap)); 59*429fa399SMatthew G. Knepley if (sf && !overlap) PetscCall(PetscSFGetGraph(sf, &Nr, &Nl, &leaves, NULL)); 60*429fa399SMatthew G. Knepley if (Nr > 0) { 61*429fa399SMatthew G. Knepley PetscCall(PetscSFComputeDegreeBegin(sf, &rootdegree)); 62*429fa399SMatthew G. Knepley PetscCall(PetscSFComputeDegreeEnd(sf, &rootdegree)); 63*429fa399SMatthew G. Knepley } else rootdegree = NULL; 64*429fa399SMatthew G. Knepley PetscCall(DMPlexGetChart(dm, &pStart, NULL)); 659566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(dm, cellHeight + 1, &fStart, &fEnd)); 66*429fa399SMatthew G. Knepley for (PetscInt f = fStart; f < fEnd; ++f) { 67*429fa399SMatthew G. Knepley PetscInt supportSize, loc = -1; 6830560a7bSMatthew G. Knepley 699566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dm, f, &supportSize)); 70e752be1aSMatthew G. Knepley if (supportSize == 1) { 71*429fa399SMatthew G. Knepley /* Do not mark faces which are shared, meaning 72*429fa399SMatthew G. Knepley they are present in the pointSF, or 73*429fa399SMatthew G. Knepley they have rootdegree > 0 74*429fa399SMatthew G. Knepley since they presumably have cells on the other side */ 75*429fa399SMatthew G. Knepley if (Nr > 0) { 76*429fa399SMatthew G. Knepley PetscCall(PetscFindInt(f, Nl, leaves, &loc)); 77*429fa399SMatthew G. Knepley if (rootdegree[f - pStart] || loc >= 0) continue; 78*429fa399SMatthew G. Knepley } 79e752be1aSMatthew G. Knepley if (val < 0) { 80e752be1aSMatthew G. Knepley PetscInt *closure = NULL; 81e752be1aSMatthew G. Knepley PetscInt clSize, cl, cval; 82e752be1aSMatthew G. Knepley 839566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(dm, f, PETSC_TRUE, &clSize, &closure)); 84e752be1aSMatthew G. Knepley for (cl = 0; cl < clSize * 2; cl += 2) { 859566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, closure[cl], &cval)); 86e752be1aSMatthew G. Knepley if (cval < 0) continue; 879566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(label, f, cval)); 88e752be1aSMatthew G. Knepley break; 89e752be1aSMatthew G. Knepley } 909566063dSJacob Faibussowitsch if (cl == clSize * 2) PetscCall(DMLabelSetValue(label, f, 1)); 919566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dm, f, PETSC_TRUE, &clSize, &closure)); 92e752be1aSMatthew G. Knepley } else { 939566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(label, f, val)); 94e752be1aSMatthew G. Knepley } 95e752be1aSMatthew G. Knepley } 9630560a7bSMatthew G. Knepley } 9730560a7bSMatthew G. Knepley PetscFunctionReturn(0); 9830560a7bSMatthew G. Knepley } 9930560a7bSMatthew G. Knepley 100cd0c2139SMatthew G Knepley /*@ 101cd0c2139SMatthew G Knepley DMPlexMarkBoundaryFaces - Mark all faces on the boundary 102cd0c2139SMatthew G Knepley 103cd0c2139SMatthew G Knepley Not Collective 104cd0c2139SMatthew G Knepley 105d8d19677SJose E. Roman Input Parameters: 106*429fa399SMatthew G. Knepley + dm - The original `DM` 107e752be1aSMatthew G. Knepley - val - The marker value, or PETSC_DETERMINE to use some value in the closure (or 1 if none are found) 108cd0c2139SMatthew G Knepley 109cd0c2139SMatthew G Knepley Output Parameter: 110e752be1aSMatthew G. Knepley . label - The DMLabel marking boundary faces with the given value 111cd0c2139SMatthew G Knepley 112*429fa399SMatthew G. Knepley Note: 113*429fa399SMatthew G. Knepley This function will use the point `PetscSF` from the input `DM` to exclude points on the partition boundary from being marked, unless the partition overlap is greater than zero. If you also wish to mark the partition boundary, you can use `DMSetPointSF()` to temporarily set it to NULL, and then reset it to the original object after the call. 114*429fa399SMatthew G. Knepley 115cd0c2139SMatthew G Knepley Level: developer 116cd0c2139SMatthew G Knepley 117db781477SPatrick Sanan .seealso: `DMLabelCreate()`, `DMCreateLabel()` 11809f723d9SJed Brown @*/ 119d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexMarkBoundaryFaces(DM dm, PetscInt val, DMLabel label) 120d71ae5a4SJacob Faibussowitsch { 121827c4036SVaclav Hapla DMPlexInterpolatedFlag flg; 122cd0c2139SMatthew G Knepley 123cd0c2139SMatthew G Knepley PetscFunctionBegin; 124827c4036SVaclav Hapla PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 1259566063dSJacob Faibussowitsch PetscCall(DMPlexIsInterpolated(dm, &flg)); 12608401ef6SPierre Jolivet PetscCheck(flg == DMPLEX_INTERPOLATED_FULL, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "DM is not fully interpolated on this rank"); 1279566063dSJacob Faibussowitsch PetscCall(DMPlexMarkBoundaryFaces_Internal(dm, val, 0, label)); 128cd0c2139SMatthew G Knepley PetscFunctionReturn(0); 129cd0c2139SMatthew G Knepley } 130cd0c2139SMatthew G Knepley 131d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexLabelComplete_Internal(DM dm, DMLabel label, PetscBool completeCells) 132d71ae5a4SJacob Faibussowitsch { 133b0bf5782SToby Isaac IS valueIS; 134ac51f24eSSander Arens PetscSF sfPoint; 135b0bf5782SToby Isaac const PetscInt *values; 136ac51f24eSSander Arens PetscInt numValues, v, cStart, cEnd, nroots; 137b0bf5782SToby Isaac 138b0bf5782SToby Isaac PetscFunctionBegin; 1399566063dSJacob Faibussowitsch PetscCall(DMLabelGetNumValues(label, &numValues)); 1409566063dSJacob Faibussowitsch PetscCall(DMLabelGetValueIS(label, &valueIS)); 1419566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(dm, 0, &cStart, &cEnd)); 1429566063dSJacob Faibussowitsch PetscCall(ISGetIndices(valueIS, &values)); 143b0bf5782SToby Isaac for (v = 0; v < numValues; ++v) { 144b0bf5782SToby Isaac IS pointIS; 145b0bf5782SToby Isaac const PetscInt *points; 146b0bf5782SToby Isaac PetscInt numPoints, p; 147b0bf5782SToby Isaac 1489566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumSize(label, values[v], &numPoints)); 1499566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(label, values[v], &pointIS)); 1509566063dSJacob Faibussowitsch PetscCall(ISGetIndices(pointIS, &points)); 151b0bf5782SToby Isaac for (p = 0; p < numPoints; ++p) { 152b0bf5782SToby Isaac PetscInt q = points[p]; 153b0bf5782SToby Isaac PetscInt *closure = NULL; 154b0bf5782SToby Isaac PetscInt closureSize, c; 155b0bf5782SToby Isaac 156b0bf5782SToby Isaac if (cStart <= q && q < cEnd && !completeCells) { /* skip cells */ 157b0bf5782SToby Isaac continue; 158b0bf5782SToby Isaac } 1599566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(dm, q, PETSC_TRUE, &closureSize, &closure)); 16048a46eb9SPierre Jolivet for (c = 0; c < closureSize * 2; c += 2) PetscCall(DMLabelSetValue(label, closure[c], values[v])); 1619566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dm, q, PETSC_TRUE, &closureSize, &closure)); 162b0bf5782SToby Isaac } 1639566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(pointIS, &points)); 1649566063dSJacob Faibussowitsch PetscCall(ISDestroy(&pointIS)); 165b0bf5782SToby Isaac } 1669566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(valueIS, &values)); 1679566063dSJacob Faibussowitsch PetscCall(ISDestroy(&valueIS)); 1689566063dSJacob Faibussowitsch PetscCall(DMGetPointSF(dm, &sfPoint)); 1699566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(sfPoint, &nroots, NULL, NULL, NULL)); 170ac51f24eSSander Arens if (nroots >= 0) { 17126279d81SSanderA DMLabel lblRoots, lblLeaves; 17226279d81SSanderA IS valueIS, pointIS; 17326279d81SSanderA const PetscInt *values; 17426279d81SSanderA PetscInt numValues, v; 17526279d81SSanderA 17626279d81SSanderA /* Pull point contributions from remote leaves into local roots */ 1779566063dSJacob Faibussowitsch PetscCall(DMLabelGather(label, sfPoint, &lblLeaves)); 1789566063dSJacob Faibussowitsch PetscCall(DMLabelGetValueIS(lblLeaves, &valueIS)); 1799566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(valueIS, &numValues)); 1809566063dSJacob Faibussowitsch PetscCall(ISGetIndices(valueIS, &values)); 18126279d81SSanderA for (v = 0; v < numValues; ++v) { 18226279d81SSanderA const PetscInt value = values[v]; 18326279d81SSanderA 1849566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(lblLeaves, value, &pointIS)); 1859566063dSJacob Faibussowitsch PetscCall(DMLabelInsertIS(label, pointIS, value)); 1869566063dSJacob Faibussowitsch PetscCall(ISDestroy(&pointIS)); 18726279d81SSanderA } 1889566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(valueIS, &values)); 1899566063dSJacob Faibussowitsch PetscCall(ISDestroy(&valueIS)); 1909566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&lblLeaves)); 19126279d81SSanderA /* Push point contributions from roots into remote leaves */ 1929566063dSJacob Faibussowitsch PetscCall(DMLabelDistribute(label, sfPoint, &lblRoots)); 1939566063dSJacob Faibussowitsch PetscCall(DMLabelGetValueIS(lblRoots, &valueIS)); 1949566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(valueIS, &numValues)); 1959566063dSJacob Faibussowitsch PetscCall(ISGetIndices(valueIS, &values)); 19626279d81SSanderA for (v = 0; v < numValues; ++v) { 19726279d81SSanderA const PetscInt value = values[v]; 19826279d81SSanderA 1999566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(lblRoots, value, &pointIS)); 2009566063dSJacob Faibussowitsch PetscCall(DMLabelInsertIS(label, pointIS, value)); 2019566063dSJacob Faibussowitsch PetscCall(ISDestroy(&pointIS)); 20226279d81SSanderA } 2039566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(valueIS, &values)); 2049566063dSJacob Faibussowitsch PetscCall(ISDestroy(&valueIS)); 2059566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&lblRoots)); 20626279d81SSanderA } 207b0bf5782SToby Isaac PetscFunctionReturn(0); 208b0bf5782SToby Isaac } 209b0bf5782SToby Isaac 2102be2b188SMatthew G Knepley /*@ 2112be2b188SMatthew G Knepley DMPlexLabelComplete - Starting with a label marking points on a surface, we add the transitive closure to the surface 2122be2b188SMatthew G Knepley 2132be2b188SMatthew G Knepley Input Parameters: 2142be2b188SMatthew G Knepley + dm - The DM 2152be2b188SMatthew G Knepley - label - A DMLabel marking the surface points 2162be2b188SMatthew G Knepley 2172be2b188SMatthew G Knepley Output Parameter: 2182be2b188SMatthew G Knepley . label - A DMLabel marking all surface points in the transitive closure 2192be2b188SMatthew G Knepley 2202be2b188SMatthew G Knepley Level: developer 2212be2b188SMatthew G Knepley 222db781477SPatrick Sanan .seealso: `DMPlexLabelCohesiveComplete()` 2232be2b188SMatthew G Knepley @*/ 224d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexLabelComplete(DM dm, DMLabel label) 225d71ae5a4SJacob Faibussowitsch { 2262be2b188SMatthew G Knepley PetscFunctionBegin; 2279566063dSJacob Faibussowitsch PetscCall(DMPlexLabelComplete_Internal(dm, label, PETSC_TRUE)); 2282be2b188SMatthew G Knepley PetscFunctionReturn(0); 2292be2b188SMatthew G Knepley } 2302be2b188SMatthew G Knepley 2316cf0e42fSMatthew G. Knepley /*@ 232a6e0b375SMatthew G. Knepley DMPlexLabelAddCells - Starting with a label marking points on a surface, we add a cell for each point 2336cf0e42fSMatthew G. Knepley 2346cf0e42fSMatthew G. Knepley Input Parameters: 2356cf0e42fSMatthew G. Knepley + dm - The DM 2366cf0e42fSMatthew G. Knepley - label - A DMLabel marking the surface points 2376cf0e42fSMatthew G. Knepley 2386cf0e42fSMatthew G. Knepley Output Parameter: 2396cf0e42fSMatthew G. Knepley . label - A DMLabel incorporating cells 2406cf0e42fSMatthew G. Knepley 2416cf0e42fSMatthew G. Knepley Level: developer 2426cf0e42fSMatthew G. Knepley 2436cf0e42fSMatthew G. Knepley Note: The cells allow FEM boundary conditions to be applied using the cell geometry 2446cf0e42fSMatthew G. Knepley 245db781477SPatrick Sanan .seealso: `DMPlexLabelAddFaceCells()`, `DMPlexLabelComplete()`, `DMPlexLabelCohesiveComplete()` 2466cf0e42fSMatthew G. Knepley @*/ 247d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexLabelAddCells(DM dm, DMLabel label) 248d71ae5a4SJacob Faibussowitsch { 2496cf0e42fSMatthew G. Knepley IS valueIS; 2506cf0e42fSMatthew G. Knepley const PetscInt *values; 251485ad865SMatthew G. Knepley PetscInt numValues, v, cStart, cEnd; 2526cf0e42fSMatthew G. Knepley 2536cf0e42fSMatthew G. Knepley PetscFunctionBegin; 2549566063dSJacob Faibussowitsch PetscCall(DMPlexGetSimplexOrBoxCells(dm, 0, &cStart, &cEnd)); 2559566063dSJacob Faibussowitsch PetscCall(DMLabelGetNumValues(label, &numValues)); 2569566063dSJacob Faibussowitsch PetscCall(DMLabelGetValueIS(label, &valueIS)); 2579566063dSJacob Faibussowitsch PetscCall(ISGetIndices(valueIS, &values)); 2586cf0e42fSMatthew G. Knepley for (v = 0; v < numValues; ++v) { 2596cf0e42fSMatthew G. Knepley IS pointIS; 2606cf0e42fSMatthew G. Knepley const PetscInt *points; 2616cf0e42fSMatthew G. Knepley PetscInt numPoints, p; 2626cf0e42fSMatthew G. Knepley 2639566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumSize(label, values[v], &numPoints)); 2649566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(label, values[v], &pointIS)); 2659566063dSJacob Faibussowitsch PetscCall(ISGetIndices(pointIS, &points)); 2666cf0e42fSMatthew G. Knepley for (p = 0; p < numPoints; ++p) { 2676cf0e42fSMatthew G. Knepley PetscInt *closure = NULL; 268a6e0b375SMatthew G. Knepley PetscInt closureSize, cl; 2696cf0e42fSMatthew G. Knepley 2709566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(dm, points[p], PETSC_FALSE, &closureSize, &closure)); 27122eabd52SMatthew G. Knepley for (cl = closureSize - 1; cl > 0; --cl) { 272a6e0b375SMatthew G. Knepley const PetscInt cell = closure[cl * 2]; 2739371c9d4SSatish Balay if ((cell >= cStart) && (cell < cEnd)) { 2749371c9d4SSatish Balay PetscCall(DMLabelSetValue(label, cell, values[v])); 2759371c9d4SSatish Balay break; 2769371c9d4SSatish Balay } 27722eabd52SMatthew G. Knepley } 2789566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dm, points[p], PETSC_FALSE, &closureSize, &closure)); 2796cf0e42fSMatthew G. Knepley } 2809566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(pointIS, &points)); 2819566063dSJacob Faibussowitsch PetscCall(ISDestroy(&pointIS)); 2826cf0e42fSMatthew G. Knepley } 2839566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(valueIS, &values)); 2849566063dSJacob Faibussowitsch PetscCall(ISDestroy(&valueIS)); 2856cf0e42fSMatthew G. Knepley PetscFunctionReturn(0); 2866cf0e42fSMatthew G. Knepley } 2876cf0e42fSMatthew G. Knepley 288f402d5e4SToby Isaac /*@ 289a6e0b375SMatthew G. Knepley DMPlexLabelAddFaceCells - Starting with a label marking faces on a surface, we add a cell for each face 290a6e0b375SMatthew G. Knepley 291a6e0b375SMatthew G. Knepley Input Parameters: 292a6e0b375SMatthew G. Knepley + dm - The DM 293a6e0b375SMatthew G. Knepley - label - A DMLabel marking the surface points 294a6e0b375SMatthew G. Knepley 295a6e0b375SMatthew G. Knepley Output Parameter: 296a6e0b375SMatthew G. Knepley . label - A DMLabel incorporating cells 297a6e0b375SMatthew G. Knepley 298a6e0b375SMatthew G. Knepley Level: developer 299a6e0b375SMatthew G. Knepley 300a6e0b375SMatthew G. Knepley Note: The cells allow FEM boundary conditions to be applied using the cell geometry 301a6e0b375SMatthew G. Knepley 302db781477SPatrick Sanan .seealso: `DMPlexLabelAddCells()`, `DMPlexLabelComplete()`, `DMPlexLabelCohesiveComplete()` 303a6e0b375SMatthew G. Knepley @*/ 304d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexLabelAddFaceCells(DM dm, DMLabel label) 305d71ae5a4SJacob Faibussowitsch { 306a6e0b375SMatthew G. Knepley IS valueIS; 307a6e0b375SMatthew G. Knepley const PetscInt *values; 308a6e0b375SMatthew G. Knepley PetscInt numValues, v, cStart, cEnd, fStart, fEnd; 309a6e0b375SMatthew G. Knepley 310a6e0b375SMatthew G. Knepley PetscFunctionBegin; 3119566063dSJacob Faibussowitsch PetscCall(DMPlexGetSimplexOrBoxCells(dm, 0, &cStart, &cEnd)); 3129566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(dm, 1, &fStart, &fEnd)); 3139566063dSJacob Faibussowitsch PetscCall(DMLabelGetNumValues(label, &numValues)); 3149566063dSJacob Faibussowitsch PetscCall(DMLabelGetValueIS(label, &valueIS)); 3159566063dSJacob Faibussowitsch PetscCall(ISGetIndices(valueIS, &values)); 316a6e0b375SMatthew G. Knepley for (v = 0; v < numValues; ++v) { 317a6e0b375SMatthew G. Knepley IS pointIS; 318a6e0b375SMatthew G. Knepley const PetscInt *points; 319a6e0b375SMatthew G. Knepley PetscInt numPoints, p; 320a6e0b375SMatthew G. Knepley 3219566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumSize(label, values[v], &numPoints)); 3229566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(label, values[v], &pointIS)); 3239566063dSJacob Faibussowitsch PetscCall(ISGetIndices(pointIS, &points)); 324a6e0b375SMatthew G. Knepley for (p = 0; p < numPoints; ++p) { 325a6e0b375SMatthew G. Knepley const PetscInt face = points[p]; 326a6e0b375SMatthew G. Knepley PetscInt *closure = NULL; 327a6e0b375SMatthew G. Knepley PetscInt closureSize, cl; 328a6e0b375SMatthew G. Knepley 329a6e0b375SMatthew G. Knepley if ((face < fStart) || (face >= fEnd)) continue; 3309566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(dm, face, PETSC_FALSE, &closureSize, &closure)); 331a6e0b375SMatthew G. Knepley for (cl = closureSize - 1; cl > 0; --cl) { 332a6e0b375SMatthew G. Knepley const PetscInt cell = closure[cl * 2]; 3339371c9d4SSatish Balay if ((cell >= cStart) && (cell < cEnd)) { 3349371c9d4SSatish Balay PetscCall(DMLabelSetValue(label, cell, values[v])); 3359371c9d4SSatish Balay break; 3369371c9d4SSatish Balay } 337a6e0b375SMatthew G. Knepley } 3389566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dm, face, PETSC_FALSE, &closureSize, &closure)); 339a6e0b375SMatthew G. Knepley } 3409566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(pointIS, &points)); 3419566063dSJacob Faibussowitsch PetscCall(ISDestroy(&pointIS)); 342a6e0b375SMatthew G. Knepley } 3439566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(valueIS, &values)); 3449566063dSJacob Faibussowitsch PetscCall(ISDestroy(&valueIS)); 345a6e0b375SMatthew G. Knepley PetscFunctionReturn(0); 346a6e0b375SMatthew G. Knepley } 347a6e0b375SMatthew G. Knepley 348a6e0b375SMatthew G. Knepley /*@ 349f402d5e4SToby Isaac DMPlexLabelClearCells - Remove cells from a label 350f402d5e4SToby Isaac 351f402d5e4SToby Isaac Input Parameters: 352f402d5e4SToby Isaac + dm - The DM 353f402d5e4SToby Isaac - label - A DMLabel marking surface points and their adjacent cells 354f402d5e4SToby Isaac 355f402d5e4SToby Isaac Output Parameter: 356f402d5e4SToby Isaac . label - A DMLabel without cells 357f402d5e4SToby Isaac 358f402d5e4SToby Isaac Level: developer 359f402d5e4SToby Isaac 360a6e0b375SMatthew G. Knepley Note: This undoes DMPlexLabelAddCells() or DMPlexLabelAddFaceCells() 361f402d5e4SToby Isaac 362db781477SPatrick Sanan .seealso: `DMPlexLabelComplete()`, `DMPlexLabelCohesiveComplete()`, `DMPlexLabelAddCells()` 363f402d5e4SToby Isaac @*/ 364d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexLabelClearCells(DM dm, DMLabel label) 365d71ae5a4SJacob Faibussowitsch { 366f402d5e4SToby Isaac IS valueIS; 367f402d5e4SToby Isaac const PetscInt *values; 368485ad865SMatthew G. Knepley PetscInt numValues, v, cStart, cEnd; 369f402d5e4SToby Isaac 370f402d5e4SToby Isaac PetscFunctionBegin; 3719566063dSJacob Faibussowitsch PetscCall(DMPlexGetSimplexOrBoxCells(dm, 0, &cStart, &cEnd)); 3729566063dSJacob Faibussowitsch PetscCall(DMLabelGetNumValues(label, &numValues)); 3739566063dSJacob Faibussowitsch PetscCall(DMLabelGetValueIS(label, &valueIS)); 3749566063dSJacob Faibussowitsch PetscCall(ISGetIndices(valueIS, &values)); 375f402d5e4SToby Isaac for (v = 0; v < numValues; ++v) { 376f402d5e4SToby Isaac IS pointIS; 377f402d5e4SToby Isaac const PetscInt *points; 378f402d5e4SToby Isaac PetscInt numPoints, p; 379f402d5e4SToby Isaac 3809566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumSize(label, values[v], &numPoints)); 3819566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(label, values[v], &pointIS)); 3829566063dSJacob Faibussowitsch PetscCall(ISGetIndices(pointIS, &points)); 383f402d5e4SToby Isaac for (p = 0; p < numPoints; ++p) { 384f402d5e4SToby Isaac PetscInt point = points[p]; 385f402d5e4SToby Isaac 38648a46eb9SPierre Jolivet if (point >= cStart && point < cEnd) PetscCall(DMLabelClearValue(label, point, values[v])); 387f402d5e4SToby Isaac } 3889566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(pointIS, &points)); 3899566063dSJacob Faibussowitsch PetscCall(ISDestroy(&pointIS)); 390f402d5e4SToby Isaac } 3919566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(valueIS, &values)); 3929566063dSJacob Faibussowitsch PetscCall(ISDestroy(&valueIS)); 393f402d5e4SToby Isaac PetscFunctionReturn(0); 394f402d5e4SToby Isaac } 395f402d5e4SToby Isaac 39659eef20bSToby Isaac /* take (oldEnd, added) pairs, ordered by height and convert them to (oldstart, newstart) pairs, ordered by ascending 39759eef20bSToby Isaac * index (skipping first, which is (0,0)) */ 398d71ae5a4SJacob Faibussowitsch static inline PetscErrorCode DMPlexShiftPointSetUp_Internal(PetscInt depth, PetscInt depthShift[]) 399d71ae5a4SJacob Faibussowitsch { 4002582d50cSToby Isaac PetscInt d, off = 0; 4012582d50cSToby Isaac 4022582d50cSToby Isaac PetscFunctionBegin; 40359eef20bSToby Isaac /* sort by (oldend): yes this is an O(n^2) sort, we expect depth <= 3 */ 4040974a383SToby Isaac for (d = 0; d < depth; d++) { 4052582d50cSToby Isaac PetscInt firstd = d; 4060974a383SToby Isaac PetscInt firstStart = depthShift[2 * d]; 4072582d50cSToby Isaac PetscInt e; 4082582d50cSToby Isaac 4092582d50cSToby Isaac for (e = d + 1; e <= depth; e++) { 4102582d50cSToby Isaac if (depthShift[2 * e] < firstStart) { 4112582d50cSToby Isaac firstd = e; 4122582d50cSToby Isaac firstStart = depthShift[2 * d]; 4132582d50cSToby Isaac } 4142582d50cSToby Isaac } 4152582d50cSToby Isaac if (firstd != d) { 4162582d50cSToby Isaac PetscInt swap[2]; 4172582d50cSToby Isaac 4182582d50cSToby Isaac e = firstd; 4192582d50cSToby Isaac swap[0] = depthShift[2 * d]; 4202582d50cSToby Isaac swap[1] = depthShift[2 * d + 1]; 4212582d50cSToby Isaac depthShift[2 * d] = depthShift[2 * e]; 4222582d50cSToby Isaac depthShift[2 * d + 1] = depthShift[2 * e + 1]; 4232582d50cSToby Isaac depthShift[2 * e] = swap[0]; 4242582d50cSToby Isaac depthShift[2 * e + 1] = swap[1]; 4252582d50cSToby Isaac } 4262582d50cSToby Isaac } 4272582d50cSToby Isaac /* convert (oldstart, added) to (oldstart, newstart) */ 4280974a383SToby Isaac for (d = 0; d <= depth; d++) { 4292582d50cSToby Isaac off += depthShift[2 * d + 1]; 43059eef20bSToby Isaac depthShift[2 * d + 1] = depthShift[2 * d] + off; 4312582d50cSToby Isaac } 4322582d50cSToby Isaac PetscFunctionReturn(0); 4332582d50cSToby Isaac } 4342582d50cSToby Isaac 4352582d50cSToby Isaac /* depthShift is a list of (old, new) pairs */ 436d71ae5a4SJacob Faibussowitsch static inline PetscInt DMPlexShiftPoint_Internal(PetscInt p, PetscInt depth, PetscInt depthShift[]) 437d71ae5a4SJacob Faibussowitsch { 4382582d50cSToby Isaac PetscInt d; 4392582d50cSToby Isaac PetscInt newOff = 0; 4402582d50cSToby Isaac 4412582d50cSToby Isaac for (d = 0; d <= depth; d++) { 4422582d50cSToby Isaac if (p < depthShift[2 * d]) return p + newOff; 4432582d50cSToby Isaac else newOff = depthShift[2 * d + 1] - depthShift[2 * d]; 4442582d50cSToby Isaac } 4450974a383SToby Isaac return p + newOff; 4462582d50cSToby Isaac } 4472582d50cSToby Isaac 4482582d50cSToby Isaac /* depthShift is a list of (old, new) pairs */ 449d71ae5a4SJacob Faibussowitsch static inline PetscInt DMPlexShiftPointInverse_Internal(PetscInt p, PetscInt depth, PetscInt depthShift[]) 450d71ae5a4SJacob Faibussowitsch { 4512582d50cSToby Isaac PetscInt d; 4522582d50cSToby Isaac PetscInt newOff = 0; 4532582d50cSToby Isaac 4542582d50cSToby Isaac for (d = 0; d <= depth; d++) { 4552582d50cSToby Isaac if (p < depthShift[2 * d + 1]) return p + newOff; 4562582d50cSToby Isaac else newOff = depthShift[2 * d] - depthShift[2 * d + 1]; 4572582d50cSToby Isaac } 4580974a383SToby Isaac return p + newOff; 459cd0c2139SMatthew G Knepley } 460cd0c2139SMatthew G Knepley 461d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexShiftSizes_Internal(DM dm, PetscInt depthShift[], DM dmNew) 462d71ae5a4SJacob Faibussowitsch { 463cd0c2139SMatthew G Knepley PetscInt depth = 0, d, pStart, pEnd, p; 464fa8e8ae5SToby Isaac DMLabel depthLabel; 465cd0c2139SMatthew G Knepley 466cd0c2139SMatthew G Knepley PetscFunctionBegin; 4679566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepth(dm, &depth)); 468cd0c2139SMatthew G Knepley if (depth < 0) PetscFunctionReturn(0); 469cd0c2139SMatthew G Knepley /* Step 1: Expand chart */ 4709566063dSJacob Faibussowitsch PetscCall(DMPlexGetChart(dm, &pStart, &pEnd)); 4710974a383SToby Isaac pEnd = DMPlexShiftPoint_Internal(pEnd, depth, depthShift); 4729566063dSJacob Faibussowitsch PetscCall(DMPlexSetChart(dmNew, pStart, pEnd)); 4739566063dSJacob Faibussowitsch PetscCall(DMCreateLabel(dmNew, "depth")); 4749566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthLabel(dmNew, &depthLabel)); 4759566063dSJacob Faibussowitsch PetscCall(DMCreateLabel(dmNew, "celltype")); 476cd0c2139SMatthew G Knepley /* Step 2: Set cone and support sizes */ 477cd0c2139SMatthew G Knepley for (d = 0; d <= depth; ++d) { 478fa8e8ae5SToby Isaac PetscInt pStartNew, pEndNew; 479fa8e8ae5SToby Isaac IS pIS; 480fa8e8ae5SToby Isaac 4819566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthStratum(dm, d, &pStart, &pEnd)); 482fa8e8ae5SToby Isaac pStartNew = DMPlexShiftPoint_Internal(pStart, depth, depthShift); 483fa8e8ae5SToby Isaac pEndNew = DMPlexShiftPoint_Internal(pEnd, depth, depthShift); 4849566063dSJacob Faibussowitsch PetscCall(ISCreateStride(PETSC_COMM_SELF, pEndNew - pStartNew, pStartNew, 1, &pIS)); 4859566063dSJacob Faibussowitsch PetscCall(DMLabelSetStratumIS(depthLabel, d, pIS)); 4869566063dSJacob Faibussowitsch PetscCall(ISDestroy(&pIS)); 487cd0c2139SMatthew G Knepley for (p = pStart; p < pEnd; ++p) { 4882582d50cSToby Isaac PetscInt newp = DMPlexShiftPoint_Internal(p, depth, depthShift); 489cd0c2139SMatthew G Knepley PetscInt size; 490412e9a14SMatthew G. Knepley DMPolytopeType ct; 491cd0c2139SMatthew G Knepley 4929566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, p, &size)); 4939566063dSJacob Faibussowitsch PetscCall(DMPlexSetConeSize(dmNew, newp, size)); 4949566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dm, p, &size)); 4959566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupportSize(dmNew, newp, size)); 4969566063dSJacob Faibussowitsch PetscCall(DMPlexGetCellType(dm, p, &ct)); 4979566063dSJacob Faibussowitsch PetscCall(DMPlexSetCellType(dmNew, newp, ct)); 498cd0c2139SMatthew G Knepley } 499cd0c2139SMatthew G Knepley } 500cd0c2139SMatthew G Knepley PetscFunctionReturn(0); 501cd0c2139SMatthew G Knepley } 502cd0c2139SMatthew G Knepley 503d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexShiftPoints_Internal(DM dm, PetscInt depthShift[], DM dmNew) 504d71ae5a4SJacob Faibussowitsch { 5052582d50cSToby Isaac PetscInt *newpoints; 5062582d50cSToby Isaac PetscInt depth = 0, maxConeSize, maxSupportSize, maxConeSizeNew, maxSupportSizeNew, pStart, pEnd, p; 507cd0c2139SMatthew G Knepley 508cd0c2139SMatthew G Knepley PetscFunctionBegin; 5099566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepth(dm, &depth)); 510cd0c2139SMatthew G Knepley if (depth < 0) PetscFunctionReturn(0); 5119566063dSJacob Faibussowitsch PetscCall(DMPlexGetMaxSizes(dm, &maxConeSize, &maxSupportSize)); 5129566063dSJacob Faibussowitsch PetscCall(DMPlexGetMaxSizes(dmNew, &maxConeSizeNew, &maxSupportSizeNew)); 5139566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(PetscMax(PetscMax(maxConeSize, maxSupportSize), PetscMax(maxConeSizeNew, maxSupportSizeNew)), &newpoints)); 514cd0c2139SMatthew G Knepley /* Step 5: Set cones and supports */ 5159566063dSJacob Faibussowitsch PetscCall(DMPlexGetChart(dm, &pStart, &pEnd)); 516cd0c2139SMatthew G Knepley for (p = pStart; p < pEnd; ++p) { 517cd0c2139SMatthew G Knepley const PetscInt *points = NULL, *orientations = NULL; 5182582d50cSToby Isaac PetscInt size, sizeNew, i, newp = DMPlexShiftPoint_Internal(p, depth, depthShift); 519cd0c2139SMatthew G Knepley 5209566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, p, &size)); 5219566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, p, &points)); 5229566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeOrientation(dm, p, &orientations)); 523ad540459SPierre Jolivet for (i = 0; i < size; ++i) newpoints[i] = DMPlexShiftPoint_Internal(points[i], depth, depthShift); 5249566063dSJacob Faibussowitsch PetscCall(DMPlexSetCone(dmNew, newp, newpoints)); 5259566063dSJacob Faibussowitsch PetscCall(DMPlexSetConeOrientation(dmNew, newp, orientations)); 5269566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dm, p, &size)); 5279566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dmNew, newp, &sizeNew)); 5289566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(dm, p, &points)); 529ad540459SPierre Jolivet for (i = 0; i < size; ++i) newpoints[i] = DMPlexShiftPoint_Internal(points[i], depth, depthShift); 530dcbb62e8SMatthew G. Knepley for (i = size; i < sizeNew; ++i) newpoints[i] = 0; 5319566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupport(dmNew, newp, newpoints)); 532cd0c2139SMatthew G Knepley } 5339566063dSJacob Faibussowitsch PetscCall(PetscFree(newpoints)); 534cd0c2139SMatthew G Knepley PetscFunctionReturn(0); 535cd0c2139SMatthew G Knepley } 536cd0c2139SMatthew G Knepley 537d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexShiftCoordinates_Internal(DM dm, PetscInt depthShift[], DM dmNew) 538d71ae5a4SJacob Faibussowitsch { 539cd0c2139SMatthew G Knepley PetscSection coordSection, newCoordSection; 540cd0c2139SMatthew G Knepley Vec coordinates, newCoordinates; 541cd0c2139SMatthew G Knepley PetscScalar *coords, *newCoords; 542f2b8cce1SMatthew G. Knepley PetscInt coordSize, sStart, sEnd; 543f2b8cce1SMatthew G. Knepley PetscInt dim, depth = 0, cStart, cEnd, cStartNew, cEndNew, c, vStart, vEnd, vStartNew, vEndNew, v; 544f2b8cce1SMatthew G. Knepley PetscBool hasCells; 545cd0c2139SMatthew G Knepley 546cd0c2139SMatthew G Knepley PetscFunctionBegin; 5479566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDim(dm, &dim)); 5489566063dSJacob Faibussowitsch PetscCall(DMSetCoordinateDim(dmNew, dim)); 5499566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepth(dm, &depth)); 550cd0c2139SMatthew G Knepley /* Step 8: Convert coordinates */ 5519566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthStratum(dm, 0, &vStart, &vEnd)); 5529566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(dm, 0, &cStart, &cEnd)); 5539566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthStratum(dmNew, 0, &vStartNew, &vEndNew)); 5549566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(dmNew, 0, &cStartNew, &cEndNew)); 5559566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateSection(dm, &coordSection)); 5569566063dSJacob Faibussowitsch PetscCall(PetscSectionCreate(PetscObjectComm((PetscObject)dm), &newCoordSection)); 5579566063dSJacob Faibussowitsch PetscCall(PetscSectionSetNumFields(newCoordSection, 1)); 5589566063dSJacob Faibussowitsch PetscCall(PetscSectionSetFieldComponents(newCoordSection, 0, dim)); 5599566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(coordSection, &sStart, &sEnd)); 560f2b8cce1SMatthew G. Knepley hasCells = sStart == cStart ? PETSC_TRUE : PETSC_FALSE; 5619566063dSJacob Faibussowitsch PetscCall(PetscSectionSetChart(newCoordSection, hasCells ? cStartNew : vStartNew, vEndNew)); 562f2b8cce1SMatthew G. Knepley if (hasCells) { 563f2b8cce1SMatthew G. Knepley for (c = cStart; c < cEnd; ++c) { 564f2b8cce1SMatthew G. Knepley PetscInt cNew = DMPlexShiftPoint_Internal(c, depth, depthShift), dof; 565f2b8cce1SMatthew G. Knepley 5669566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(coordSection, c, &dof)); 5679566063dSJacob Faibussowitsch PetscCall(PetscSectionSetDof(newCoordSection, cNew, dof)); 5689566063dSJacob Faibussowitsch PetscCall(PetscSectionSetFieldDof(newCoordSection, cNew, 0, dof)); 569f2b8cce1SMatthew G. Knepley } 570f2b8cce1SMatthew G. Knepley } 571cd0c2139SMatthew G Knepley for (v = vStartNew; v < vEndNew; ++v) { 5729566063dSJacob Faibussowitsch PetscCall(PetscSectionSetDof(newCoordSection, v, dim)); 5739566063dSJacob Faibussowitsch PetscCall(PetscSectionSetFieldDof(newCoordSection, v, 0, dim)); 574cd0c2139SMatthew G Knepley } 5759566063dSJacob Faibussowitsch PetscCall(PetscSectionSetUp(newCoordSection)); 5769566063dSJacob Faibussowitsch PetscCall(DMSetCoordinateSection(dmNew, PETSC_DETERMINE, newCoordSection)); 5779566063dSJacob Faibussowitsch PetscCall(PetscSectionGetStorageSize(newCoordSection, &coordSize)); 5789566063dSJacob Faibussowitsch PetscCall(VecCreate(PETSC_COMM_SELF, &newCoordinates)); 5799566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)newCoordinates, "coordinates")); 5809566063dSJacob Faibussowitsch PetscCall(VecSetSizes(newCoordinates, coordSize, PETSC_DETERMINE)); 5819566063dSJacob Faibussowitsch PetscCall(VecSetBlockSize(newCoordinates, dim)); 5829566063dSJacob Faibussowitsch PetscCall(VecSetType(newCoordinates, VECSTANDARD)); 5839566063dSJacob Faibussowitsch PetscCall(DMSetCoordinatesLocal(dmNew, newCoordinates)); 5849566063dSJacob Faibussowitsch PetscCall(DMGetCoordinatesLocal(dm, &coordinates)); 5859566063dSJacob Faibussowitsch PetscCall(VecGetArray(coordinates, &coords)); 5869566063dSJacob Faibussowitsch PetscCall(VecGetArray(newCoordinates, &newCoords)); 587f2b8cce1SMatthew G. Knepley if (hasCells) { 588f2b8cce1SMatthew G. Knepley for (c = cStart; c < cEnd; ++c) { 589f2b8cce1SMatthew G. Knepley PetscInt cNew = DMPlexShiftPoint_Internal(c, depth, depthShift), dof, off, noff, d; 590f2b8cce1SMatthew G. Knepley 5919566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(coordSection, c, &dof)); 5929566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(coordSection, c, &off)); 5939566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(newCoordSection, cNew, &noff)); 594f2b8cce1SMatthew G. Knepley for (d = 0; d < dof; ++d) newCoords[noff + d] = coords[off + d]; 595f2b8cce1SMatthew G. Knepley } 596f2b8cce1SMatthew G. Knepley } 597cd0c2139SMatthew G Knepley for (v = vStart; v < vEnd; ++v) { 598cd0c2139SMatthew G Knepley PetscInt dof, off, noff, d; 599cd0c2139SMatthew G Knepley 6009566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(coordSection, v, &dof)); 6019566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(coordSection, v, &off)); 6029566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(newCoordSection, DMPlexShiftPoint_Internal(v, depth, depthShift), &noff)); 603f2b8cce1SMatthew G. Knepley for (d = 0; d < dof; ++d) newCoords[noff + d] = coords[off + d]; 604cd0c2139SMatthew G Knepley } 6059566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(coordinates, &coords)); 6069566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(newCoordinates, &newCoords)); 6079566063dSJacob Faibussowitsch PetscCall(VecDestroy(&newCoordinates)); 6089566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&newCoordSection)); 609cd0c2139SMatthew G Knepley PetscFunctionReturn(0); 610cd0c2139SMatthew G Knepley } 611cd0c2139SMatthew G Knepley 612d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexShiftSF_Single(DM dm, PetscInt depthShift[], PetscSF sf, PetscSF sfNew) 613d71ae5a4SJacob Faibussowitsch { 614cd0c2139SMatthew G Knepley const PetscSFNode *remotePoints; 615cd0c2139SMatthew G Knepley PetscSFNode *gremotePoints; 616cd0c2139SMatthew G Knepley const PetscInt *localPoints; 617cd0c2139SMatthew G Knepley PetscInt *glocalPoints, *newLocation, *newRemoteLocation; 6180e33faafSMatthew G. Knepley PetscInt numRoots, numLeaves, l, pStart, pEnd, depth = 0, totShift = 0; 619cd0c2139SMatthew G Knepley 620cd0c2139SMatthew G Knepley PetscFunctionBegin; 6219566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepth(dm, &depth)); 6229566063dSJacob Faibussowitsch PetscCall(DMPlexGetChart(dm, &pStart, &pEnd)); 6239566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(sf, &numRoots, &numLeaves, &localPoints, &remotePoints)); 6246e21efdcSToby Isaac totShift = DMPlexShiftPoint_Internal(pEnd, depth, depthShift) - pEnd; 625cd0c2139SMatthew G Knepley if (numRoots >= 0) { 6269566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(numRoots, &newLocation, pEnd - pStart, &newRemoteLocation)); 6270e33faafSMatthew G. Knepley for (l = 0; l < numRoots; ++l) newLocation[l] = DMPlexShiftPoint_Internal(l, depth, depthShift); 6289566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(sf, MPIU_INT, newLocation, newRemoteLocation, MPI_REPLACE)); 6299566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(sf, MPIU_INT, newLocation, newRemoteLocation, MPI_REPLACE)); 6309566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(numLeaves, &glocalPoints)); 6319566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(numLeaves, &gremotePoints)); 632cd0c2139SMatthew G Knepley for (l = 0; l < numLeaves; ++l) { 6332582d50cSToby Isaac glocalPoints[l] = DMPlexShiftPoint_Internal(localPoints[l], depth, depthShift); 634cd0c2139SMatthew G Knepley gremotePoints[l].rank = remotePoints[l].rank; 635cd0c2139SMatthew G Knepley gremotePoints[l].index = newRemoteLocation[localPoints[l]]; 636cd0c2139SMatthew G Knepley } 6379566063dSJacob Faibussowitsch PetscCall(PetscFree2(newLocation, newRemoteLocation)); 6389566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(sfNew, numRoots + totShift, numLeaves, glocalPoints, PETSC_OWN_POINTER, gremotePoints, PETSC_OWN_POINTER)); 6390e33faafSMatthew G. Knepley } 6400e33faafSMatthew G. Knepley PetscFunctionReturn(0); 6410e33faafSMatthew G. Knepley } 6420e33faafSMatthew G. Knepley 643d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexShiftSF_Internal(DM dm, PetscInt depthShift[], DM dmNew) 644d71ae5a4SJacob Faibussowitsch { 6450e33faafSMatthew G. Knepley PetscSF sfPoint, sfPointNew; 6460e33faafSMatthew G. Knepley PetscBool useNatural; 6470e33faafSMatthew G. Knepley 6480e33faafSMatthew G. Knepley PetscFunctionBegin; 6490e33faafSMatthew G. Knepley /* Step 9: Convert pointSF */ 6509566063dSJacob Faibussowitsch PetscCall(DMGetPointSF(dm, &sfPoint)); 6519566063dSJacob Faibussowitsch PetscCall(DMGetPointSF(dmNew, &sfPointNew)); 6529566063dSJacob Faibussowitsch PetscCall(DMPlexShiftSF_Single(dm, depthShift, sfPoint, sfPointNew)); 6530e33faafSMatthew G. Knepley /* Step 9b: Convert naturalSF */ 6549566063dSJacob Faibussowitsch PetscCall(DMGetUseNatural(dm, &useNatural)); 6550e33faafSMatthew G. Knepley if (useNatural) { 6560e33faafSMatthew G. Knepley PetscSF sfNat, sfNatNew; 6570e33faafSMatthew G. Knepley 6589566063dSJacob Faibussowitsch PetscCall(DMSetUseNatural(dmNew, useNatural)); 6599566063dSJacob Faibussowitsch PetscCall(DMGetNaturalSF(dm, &sfNat)); 6609566063dSJacob Faibussowitsch PetscCall(DMGetNaturalSF(dmNew, &sfNatNew)); 6619566063dSJacob Faibussowitsch PetscCall(DMPlexShiftSF_Single(dm, depthShift, sfNat, sfNatNew)); 662cd0c2139SMatthew G Knepley } 663cd0c2139SMatthew G Knepley PetscFunctionReturn(0); 664cd0c2139SMatthew G Knepley } 665cd0c2139SMatthew G Knepley 666d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexShiftLabels_Internal(DM dm, PetscInt depthShift[], DM dmNew) 667d71ae5a4SJacob Faibussowitsch { 668d56405f8SMatthew G. Knepley PetscInt depth = 0, numLabels, l; 669cd0c2139SMatthew G Knepley 670cd0c2139SMatthew G Knepley PetscFunctionBegin; 6719566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepth(dm, &depth)); 672cd0c2139SMatthew G Knepley /* Step 10: Convert labels */ 6739566063dSJacob Faibussowitsch PetscCall(DMGetNumLabels(dm, &numLabels)); 674cd0c2139SMatthew G Knepley for (l = 0; l < numLabels; ++l) { 675cd0c2139SMatthew G Knepley DMLabel label, newlabel; 676cd0c2139SMatthew G Knepley const char *lname; 677fa8e8ae5SToby Isaac PetscBool isDepth, isDim; 678cd0c2139SMatthew G Knepley IS valueIS; 679cd0c2139SMatthew G Knepley const PetscInt *values; 680cd0c2139SMatthew G Knepley PetscInt numValues, val; 681cd0c2139SMatthew G Knepley 6829566063dSJacob Faibussowitsch PetscCall(DMGetLabelName(dm, l, &lname)); 6839566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(lname, "depth", &isDepth)); 684cd0c2139SMatthew G Knepley if (isDepth) continue; 6859566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(lname, "dim", &isDim)); 686fa8e8ae5SToby Isaac if (isDim) continue; 6879566063dSJacob Faibussowitsch PetscCall(DMCreateLabel(dmNew, lname)); 6889566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, lname, &label)); 6899566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dmNew, lname, &newlabel)); 6909566063dSJacob Faibussowitsch PetscCall(DMLabelGetDefaultValue(label, &val)); 6919566063dSJacob Faibussowitsch PetscCall(DMLabelSetDefaultValue(newlabel, val)); 6929566063dSJacob Faibussowitsch PetscCall(DMLabelGetValueIS(label, &valueIS)); 6939566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(valueIS, &numValues)); 6949566063dSJacob Faibussowitsch PetscCall(ISGetIndices(valueIS, &values)); 695cd0c2139SMatthew G Knepley for (val = 0; val < numValues; ++val) { 696cd0c2139SMatthew G Knepley IS pointIS; 697cd0c2139SMatthew G Knepley const PetscInt *points; 698cd0c2139SMatthew G Knepley PetscInt numPoints, p; 699cd0c2139SMatthew G Knepley 7009566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(label, values[val], &pointIS)); 7019566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(pointIS, &numPoints)); 7029566063dSJacob Faibussowitsch PetscCall(ISGetIndices(pointIS, &points)); 703cd0c2139SMatthew G Knepley for (p = 0; p < numPoints; ++p) { 7042582d50cSToby Isaac const PetscInt newpoint = DMPlexShiftPoint_Internal(points[p], depth, depthShift); 705cd0c2139SMatthew G Knepley 7069566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(newlabel, newpoint, values[val])); 707cd0c2139SMatthew G Knepley } 7089566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(pointIS, &points)); 7099566063dSJacob Faibussowitsch PetscCall(ISDestroy(&pointIS)); 710cd0c2139SMatthew G Knepley } 7119566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(valueIS, &values)); 7129566063dSJacob Faibussowitsch PetscCall(ISDestroy(&valueIS)); 713cd0c2139SMatthew G Knepley } 714d56405f8SMatthew G. Knepley PetscFunctionReturn(0); 715d56405f8SMatthew G. Knepley } 716d56405f8SMatthew G. Knepley 717d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexCreateVTKLabel_Internal(DM dm, PetscBool createGhostLabel, DM dmNew) 718d71ae5a4SJacob Faibussowitsch { 719d56405f8SMatthew G. Knepley PetscSF sfPoint; 720d56405f8SMatthew G. Knepley DMLabel vtkLabel, ghostLabel = NULL; 721d56405f8SMatthew G. Knepley const PetscSFNode *leafRemote; 722d56405f8SMatthew G. Knepley const PetscInt *leafLocal; 723d56405f8SMatthew G. Knepley PetscInt cellHeight, cStart, cEnd, c, fStart, fEnd, f, numLeaves, l; 724d56405f8SMatthew G. Knepley PetscMPIInt rank; 725d56405f8SMatthew G. Knepley 726d56405f8SMatthew G. Knepley PetscFunctionBegin; 727cd0c2139SMatthew G Knepley /* Step 11: Make label for output (vtk) and to mark ghost points (ghost) */ 7289566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)dm), &rank)); 7299566063dSJacob Faibussowitsch PetscCall(DMGetPointSF(dm, &sfPoint)); 7309566063dSJacob Faibussowitsch PetscCall(DMPlexGetVTKCellHeight(dmNew, &cellHeight)); 7319566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(dm, cellHeight, &cStart, &cEnd)); 7329566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(sfPoint, NULL, &numLeaves, &leafLocal, &leafRemote)); 7339566063dSJacob Faibussowitsch PetscCall(DMCreateLabel(dmNew, "vtk")); 7349566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dmNew, "vtk", &vtkLabel)); 735d56405f8SMatthew G. Knepley if (createGhostLabel) { 7369566063dSJacob Faibussowitsch PetscCall(DMCreateLabel(dmNew, "ghost")); 7379566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dmNew, "ghost", &ghostLabel)); 738d56405f8SMatthew G. Knepley } 739cd0c2139SMatthew G Knepley for (l = 0, c = cStart; l < numLeaves && c < cEnd; ++l, ++c) { 74048a46eb9SPierre Jolivet for (; c < leafLocal[l] && c < cEnd; ++c) PetscCall(DMLabelSetValue(vtkLabel, c, 1)); 741cd0c2139SMatthew G Knepley if (leafLocal[l] >= cEnd) break; 742cd0c2139SMatthew G Knepley if (leafRemote[l].rank == rank) { 7439566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(vtkLabel, c, 1)); 7441baa6e33SBarry Smith } else if (ghostLabel) PetscCall(DMLabelSetValue(ghostLabel, c, 2)); 745cd0c2139SMatthew G Knepley } 74648a46eb9SPierre Jolivet for (; c < cEnd; ++c) PetscCall(DMLabelSetValue(vtkLabel, c, 1)); 747d56405f8SMatthew G. Knepley if (ghostLabel) { 7489566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(dmNew, 1, &fStart, &fEnd)); 749cd0c2139SMatthew G Knepley for (f = fStart; f < fEnd; ++f) { 750cd0c2139SMatthew G Knepley PetscInt numCells; 751cd0c2139SMatthew G Knepley 7529566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dmNew, f, &numCells)); 753cd0c2139SMatthew G Knepley if (numCells < 2) { 7549566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(ghostLabel, f, 1)); 755cd0c2139SMatthew G Knepley } else { 756cd0c2139SMatthew G Knepley const PetscInt *cells = NULL; 757cd0c2139SMatthew G Knepley PetscInt vA, vB; 758cd0c2139SMatthew G Knepley 7599566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(dmNew, f, &cells)); 7609566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(vtkLabel, cells[0], &vA)); 7619566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(vtkLabel, cells[1], &vB)); 7629566063dSJacob Faibussowitsch if (vA != 1 && vB != 1) PetscCall(DMLabelSetValue(ghostLabel, f, 1)); 763cd0c2139SMatthew G Knepley } 764cd0c2139SMatthew G Knepley } 765d56405f8SMatthew G. Knepley } 766cd0c2139SMatthew G Knepley PetscFunctionReturn(0); 767cd0c2139SMatthew G Knepley } 768cd0c2139SMatthew G Knepley 769d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexShiftTree_Internal(DM dm, PetscInt depthShift[], DM dmNew) 770d71ae5a4SJacob Faibussowitsch { 771ca04dac2SToby Isaac DM refTree; 772ca04dac2SToby Isaac PetscSection pSec; 773ca04dac2SToby Isaac PetscInt *parents, *childIDs; 774ca04dac2SToby Isaac 775ca04dac2SToby Isaac PetscFunctionBegin; 7769566063dSJacob Faibussowitsch PetscCall(DMPlexGetReferenceTree(dm, &refTree)); 7779566063dSJacob Faibussowitsch PetscCall(DMPlexSetReferenceTree(dmNew, refTree)); 7789566063dSJacob Faibussowitsch PetscCall(DMPlexGetTree(dm, &pSec, &parents, &childIDs, NULL, NULL)); 779ca04dac2SToby Isaac if (pSec) { 7802582d50cSToby Isaac PetscInt p, pStart, pEnd, *parentsShifted, pStartShifted, pEndShifted, depth; 781fb4630b5SToby Isaac PetscInt *childIDsShifted; 782ca04dac2SToby Isaac PetscSection pSecShifted; 783ca04dac2SToby Isaac 7849566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(pSec, &pStart, &pEnd)); 7859566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepth(dm, &depth)); 7862582d50cSToby Isaac pStartShifted = DMPlexShiftPoint_Internal(pStart, depth, depthShift); 7872582d50cSToby Isaac pEndShifted = DMPlexShiftPoint_Internal(pEnd, depth, depthShift); 7889566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(pEndShifted - pStartShifted, &parentsShifted, pEndShifted - pStartShifted, &childIDsShifted)); 7899566063dSJacob Faibussowitsch PetscCall(PetscSectionCreate(PetscObjectComm((PetscObject)dmNew), &pSecShifted)); 7909566063dSJacob Faibussowitsch PetscCall(PetscSectionSetChart(pSecShifted, pStartShifted, pEndShifted)); 791ca04dac2SToby Isaac for (p = pStartShifted; p < pEndShifted; p++) { 792fb4630b5SToby Isaac /* start off assuming no children */ 7939566063dSJacob Faibussowitsch PetscCall(PetscSectionSetDof(pSecShifted, p, 0)); 794fb4630b5SToby Isaac } 795fb4630b5SToby Isaac for (p = pStart; p < pEnd; p++) { 796fb4630b5SToby Isaac PetscInt dof; 797fb4630b5SToby Isaac PetscInt pNew = DMPlexShiftPoint_Internal(p, depth, depthShift); 798ca04dac2SToby Isaac 7999566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(pSec, p, &dof)); 8009566063dSJacob Faibussowitsch PetscCall(PetscSectionSetDof(pSecShifted, pNew, dof)); 801ca04dac2SToby Isaac } 8029566063dSJacob Faibussowitsch PetscCall(PetscSectionSetUp(pSecShifted)); 803fb4630b5SToby Isaac for (p = pStart; p < pEnd; p++) { 804fb4630b5SToby Isaac PetscInt dof; 805fb4630b5SToby Isaac PetscInt pNew = DMPlexShiftPoint_Internal(p, depth, depthShift); 806fb4630b5SToby Isaac 8079566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(pSec, p, &dof)); 808fb4630b5SToby Isaac if (dof) { 809fb4630b5SToby Isaac PetscInt off, offNew; 810fb4630b5SToby Isaac 8119566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(pSec, p, &off)); 8129566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(pSecShifted, pNew, &offNew)); 813fb4630b5SToby Isaac parentsShifted[offNew] = DMPlexShiftPoint_Internal(parents[off], depth, depthShift); 814fb4630b5SToby Isaac childIDsShifted[offNew] = childIDs[off]; 815fb4630b5SToby Isaac } 816fb4630b5SToby Isaac } 8179566063dSJacob Faibussowitsch PetscCall(DMPlexSetTree(dmNew, pSecShifted, parentsShifted, childIDsShifted)); 8189566063dSJacob Faibussowitsch PetscCall(PetscFree2(parentsShifted, childIDsShifted)); 8199566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&pSecShifted)); 820ca04dac2SToby Isaac } 821ca04dac2SToby Isaac PetscFunctionReturn(0); 822ca04dac2SToby Isaac } 823ca04dac2SToby Isaac 824d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexConstructGhostCells_Internal(DM dm, DMLabel label, PetscInt *numGhostCells, DM gdm) 825d71ae5a4SJacob Faibussowitsch { 826da97024aSMatthew G. Knepley PetscSF sf; 827cd0c2139SMatthew G Knepley IS valueIS; 828da97024aSMatthew G. Knepley const PetscInt *values, *leaves; 829cd0c2139SMatthew G Knepley PetscInt *depthShift; 8302582d50cSToby Isaac PetscInt d, depth = 0, nleaves, loc, Ng, numFS, fs, fStart, fEnd, ghostCell, cEnd, c; 8314fb89dddSMatthew G. Knepley const PetscReal *maxCell, *Lstart, *L; 832cd0c2139SMatthew G Knepley 833cd0c2139SMatthew G Knepley PetscFunctionBegin; 8349566063dSJacob Faibussowitsch PetscCall(DMGetPointSF(dm, &sf)); 8359566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(sf, NULL, &nleaves, &leaves, NULL)); 836da97024aSMatthew G. Knepley nleaves = PetscMax(0, nleaves); 8379566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(dm, 1, &fStart, &fEnd)); 838cd0c2139SMatthew G Knepley /* Count ghost cells */ 8399566063dSJacob Faibussowitsch PetscCall(DMLabelGetValueIS(label, &valueIS)); 8409566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(valueIS, &numFS)); 8419566063dSJacob Faibussowitsch PetscCall(ISGetIndices(valueIS, &values)); 8424a6cfa73SMatthew G. Knepley Ng = 0; 843cd0c2139SMatthew G Knepley for (fs = 0; fs < numFS; ++fs) { 84446c796b9SMatthew G. Knepley IS faceIS; 84546c796b9SMatthew G. Knepley const PetscInt *faces; 84646c796b9SMatthew G. Knepley PetscInt numFaces, f, numBdFaces = 0; 847cd0c2139SMatthew G Knepley 8489566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(label, values[fs], &faceIS)); 8499566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(faceIS, &numFaces)); 8509566063dSJacob Faibussowitsch PetscCall(ISGetIndices(faceIS, &faces)); 85146c796b9SMatthew G. Knepley for (f = 0; f < numFaces; ++f) { 852ca04dac2SToby Isaac PetscInt numChildren; 853ca04dac2SToby Isaac 8549566063dSJacob Faibussowitsch PetscCall(PetscFindInt(faces[f], nleaves, leaves, &loc)); 8559566063dSJacob Faibussowitsch PetscCall(DMPlexGetTreeChildren(dm, faces[f], &numChildren, NULL)); 856ca04dac2SToby Isaac /* non-local and ancestors points don't get to register ghosts */ 857ca04dac2SToby Isaac if (loc >= 0 || numChildren) continue; 85846c796b9SMatthew G. Knepley if ((faces[f] >= fStart) && (faces[f] < fEnd)) ++numBdFaces; 85946c796b9SMatthew G. Knepley } 8604a6cfa73SMatthew G. Knepley Ng += numBdFaces; 8619566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(faceIS, &faces)); 8629566063dSJacob Faibussowitsch PetscCall(ISDestroy(&faceIS)); 863cd0c2139SMatthew G Knepley } 8649566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepth(dm, &depth)); 8659566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(2 * (depth + 1), &depthShift)); 8662582d50cSToby Isaac for (d = 0; d <= depth; d++) { 86759eef20bSToby Isaac PetscInt dEnd; 8682582d50cSToby Isaac 8699566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthStratum(dm, d, NULL, &dEnd)); 87059eef20bSToby Isaac depthShift[2 * d] = dEnd; 8712582d50cSToby Isaac depthShift[2 * d + 1] = 0; 8722582d50cSToby Isaac } 8732582d50cSToby Isaac if (depth >= 0) depthShift[2 * depth + 1] = Ng; 8749566063dSJacob Faibussowitsch PetscCall(DMPlexShiftPointSetUp_Internal(depth, depthShift)); 8759566063dSJacob Faibussowitsch PetscCall(DMPlexShiftSizes_Internal(dm, depthShift, gdm)); 876cd0c2139SMatthew G Knepley /* Step 3: Set cone/support sizes for new points */ 8779566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(dm, 0, NULL, &cEnd)); 87848a46eb9SPierre Jolivet for (c = cEnd; c < cEnd + Ng; ++c) PetscCall(DMPlexSetConeSize(gdm, c, 1)); 879cd0c2139SMatthew G Knepley for (fs = 0; fs < numFS; ++fs) { 880cd0c2139SMatthew G Knepley IS faceIS; 881cd0c2139SMatthew G Knepley const PetscInt *faces; 882cd0c2139SMatthew G Knepley PetscInt numFaces, f; 883cd0c2139SMatthew G Knepley 8849566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(label, values[fs], &faceIS)); 8859566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(faceIS, &numFaces)); 8869566063dSJacob Faibussowitsch PetscCall(ISGetIndices(faceIS, &faces)); 887cd0c2139SMatthew G Knepley for (f = 0; f < numFaces; ++f) { 888ca04dac2SToby Isaac PetscInt size, numChildren; 889cd0c2139SMatthew G Knepley 8909566063dSJacob Faibussowitsch PetscCall(PetscFindInt(faces[f], nleaves, leaves, &loc)); 8919566063dSJacob Faibussowitsch PetscCall(DMPlexGetTreeChildren(dm, faces[f], &numChildren, NULL)); 892ca04dac2SToby Isaac if (loc >= 0 || numChildren) continue; 89346c796b9SMatthew G. Knepley if ((faces[f] < fStart) || (faces[f] >= fEnd)) continue; 8949566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dm, faces[f], &size)); 89563a3b9bcSJacob Faibussowitsch PetscCheck(size == 1, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "DM has boundary face %" PetscInt_FMT " with %" PetscInt_FMT " support cells", faces[f], size); 8969566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupportSize(gdm, faces[f] + Ng, 2)); 897cd0c2139SMatthew G Knepley } 8989566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(faceIS, &faces)); 8999566063dSJacob Faibussowitsch PetscCall(ISDestroy(&faceIS)); 900cd0c2139SMatthew G Knepley } 901cd0c2139SMatthew G Knepley /* Step 4: Setup ghosted DM */ 9029566063dSJacob Faibussowitsch PetscCall(DMSetUp(gdm)); 9039566063dSJacob Faibussowitsch PetscCall(DMPlexShiftPoints_Internal(dm, depthShift, gdm)); 904cd0c2139SMatthew G Knepley /* Step 6: Set cones and supports for new points */ 905cd0c2139SMatthew G Knepley ghostCell = cEnd; 906cd0c2139SMatthew G Knepley for (fs = 0; fs < numFS; ++fs) { 907cd0c2139SMatthew G Knepley IS faceIS; 908cd0c2139SMatthew G Knepley const PetscInt *faces; 909cd0c2139SMatthew G Knepley PetscInt numFaces, f; 910cd0c2139SMatthew G Knepley 9119566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(label, values[fs], &faceIS)); 9129566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(faceIS, &numFaces)); 9139566063dSJacob Faibussowitsch PetscCall(ISGetIndices(faceIS, &faces)); 91446c796b9SMatthew G. Knepley for (f = 0; f < numFaces; ++f) { 915ca04dac2SToby Isaac PetscInt newFace = faces[f] + Ng, numChildren; 916cd0c2139SMatthew G Knepley 9179566063dSJacob Faibussowitsch PetscCall(PetscFindInt(faces[f], nleaves, leaves, &loc)); 9189566063dSJacob Faibussowitsch PetscCall(DMPlexGetTreeChildren(dm, faces[f], &numChildren, NULL)); 919ca04dac2SToby Isaac if (loc >= 0 || numChildren) continue; 92046c796b9SMatthew G. Knepley if ((faces[f] < fStart) || (faces[f] >= fEnd)) continue; 9219566063dSJacob Faibussowitsch PetscCall(DMPlexSetCone(gdm, ghostCell, &newFace)); 9229566063dSJacob Faibussowitsch PetscCall(DMPlexInsertSupport(gdm, newFace, 1, ghostCell)); 92346c796b9SMatthew G. Knepley ++ghostCell; 924cd0c2139SMatthew G Knepley } 9259566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(faceIS, &faces)); 9269566063dSJacob Faibussowitsch PetscCall(ISDestroy(&faceIS)); 927cd0c2139SMatthew G Knepley } 9289566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(valueIS, &values)); 9299566063dSJacob Faibussowitsch PetscCall(ISDestroy(&valueIS)); 9309566063dSJacob Faibussowitsch PetscCall(DMPlexShiftCoordinates_Internal(dm, depthShift, gdm)); 9319566063dSJacob Faibussowitsch PetscCall(DMPlexShiftSF_Internal(dm, depthShift, gdm)); 9329566063dSJacob Faibussowitsch PetscCall(DMPlexShiftLabels_Internal(dm, depthShift, gdm)); 9339566063dSJacob Faibussowitsch PetscCall(DMPlexCreateVTKLabel_Internal(dm, PETSC_TRUE, gdm)); 9349566063dSJacob Faibussowitsch PetscCall(DMPlexShiftTree_Internal(dm, depthShift, gdm)); 9359566063dSJacob Faibussowitsch PetscCall(PetscFree(depthShift)); 93648a46eb9SPierre Jolivet for (c = cEnd; c < cEnd + Ng; ++c) PetscCall(DMPlexSetCellType(gdm, c, DM_POLYTOPE_FV_GHOST)); 937966c7b3fSMatthew G. Knepley /* Step 7: Periodicity */ 9384fb89dddSMatthew G. Knepley PetscCall(DMGetPeriodicity(dm, &maxCell, &Lstart, &L)); 9394fb89dddSMatthew G. Knepley PetscCall(DMSetPeriodicity(gdm, maxCell, Lstart, L)); 9404a6cfa73SMatthew G. Knepley if (numGhostCells) *numGhostCells = Ng; 941cd0c2139SMatthew G Knepley PetscFunctionReturn(0); 942cd0c2139SMatthew G Knepley } 943cd0c2139SMatthew G Knepley 944cd0c2139SMatthew G Knepley /*@C 945cd0c2139SMatthew G Knepley DMPlexConstructGhostCells - Construct ghost cells which connect to every boundary face 946cd0c2139SMatthew G Knepley 947cd0c2139SMatthew G Knepley Collective on dm 948cd0c2139SMatthew G Knepley 949cd0c2139SMatthew G Knepley Input Parameters: 950cd0c2139SMatthew G Knepley + dm - The original DM 951cd0c2139SMatthew G Knepley - labelName - The label specifying the boundary faces, or "Face Sets" if this is NULL 952cd0c2139SMatthew G Knepley 953cd0c2139SMatthew G Knepley Output Parameters: 954cd0c2139SMatthew G Knepley + numGhostCells - The number of ghost cells added to the DM 955cd0c2139SMatthew G Knepley - dmGhosted - The new DM 956cd0c2139SMatthew G Knepley 957cd0c2139SMatthew G Knepley Note: If no label exists of that name, one will be created marking all boundary faces 958cd0c2139SMatthew G Knepley 959cd0c2139SMatthew G Knepley Level: developer 960cd0c2139SMatthew G Knepley 961db781477SPatrick Sanan .seealso: `DMCreate()` 96231266bc0SMatthew G. Knepley @*/ 963d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexConstructGhostCells(DM dm, const char labelName[], PetscInt *numGhostCells, DM *dmGhosted) 964d71ae5a4SJacob Faibussowitsch { 965cd0c2139SMatthew G Knepley DM gdm; 966cd0c2139SMatthew G Knepley DMLabel label; 967cd0c2139SMatthew G Knepley const char *name = labelName ? labelName : "Face Sets"; 968412e9a14SMatthew G. Knepley PetscInt dim, Ng = 0; 969b0441da4SMatthew G. Knepley PetscBool useCone, useClosure; 970cd0c2139SMatthew G Knepley 971cd0c2139SMatthew G Knepley PetscFunctionBegin; 972cd0c2139SMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 973dadcf809SJacob Faibussowitsch if (numGhostCells) PetscValidIntPointer(numGhostCells, 3); 974cd0c2139SMatthew G Knepley PetscValidPointer(dmGhosted, 4); 9759566063dSJacob Faibussowitsch PetscCall(DMCreate(PetscObjectComm((PetscObject)dm), &gdm)); 9769566063dSJacob Faibussowitsch PetscCall(DMSetType(gdm, DMPLEX)); 9779566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 9789566063dSJacob Faibussowitsch PetscCall(DMSetDimension(gdm, dim)); 9799566063dSJacob Faibussowitsch PetscCall(DMGetBasicAdjacency(dm, &useCone, &useClosure)); 9809566063dSJacob Faibussowitsch PetscCall(DMSetBasicAdjacency(gdm, useCone, useClosure)); 9819566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, name, &label)); 982cd0c2139SMatthew G Knepley if (!label) { 983cd0c2139SMatthew G Knepley /* Get label for boundary faces */ 9849566063dSJacob Faibussowitsch PetscCall(DMCreateLabel(dm, name)); 9859566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, name, &label)); 9869566063dSJacob Faibussowitsch PetscCall(DMPlexMarkBoundaryFaces(dm, 1, label)); 987cd0c2139SMatthew G Knepley } 9889566063dSJacob Faibussowitsch PetscCall(DMPlexConstructGhostCells_Internal(dm, label, &Ng, gdm)); 9899566063dSJacob Faibussowitsch PetscCall(DMCopyDisc(dm, gdm)); 9905de52c6dSVaclav Hapla PetscCall(DMPlexCopy_Internal(dm, PETSC_TRUE, PETSC_TRUE, gdm)); 991cad26855SMatthew G. Knepley gdm->setfromoptionscalled = dm->setfromoptionscalled; 992d80ece95SMatthew G. Knepley if (numGhostCells) *numGhostCells = Ng; 993cd0c2139SMatthew G Knepley *dmGhosted = gdm; 994cd0c2139SMatthew G Knepley PetscFunctionReturn(0); 995cd0c2139SMatthew G Knepley } 996cd0c2139SMatthew G Knepley 997d71ae5a4SJacob Faibussowitsch static PetscErrorCode DivideCells_Private(DM dm, DMLabel label, DMPlexPointQueue queue) 998d71ae5a4SJacob Faibussowitsch { 999accc9626SMatthew G. Knepley PetscInt dim, d, shift = 100, *pStart, *pEnd; 1000accc9626SMatthew G. Knepley 1001accc9626SMatthew G. Knepley PetscFunctionBegin; 1002accc9626SMatthew G. Knepley PetscCall(DMGetDimension(dm, &dim)); 1003accc9626SMatthew G. Knepley PetscCall(PetscMalloc2(dim, &pStart, dim, &pEnd)); 100448a46eb9SPierre Jolivet for (d = 0; d < dim; ++d) PetscCall(DMPlexGetDepthStratum(dm, d, &pStart[d], &pEnd[d])); 1005accc9626SMatthew G. Knepley while (!DMPlexPointQueueEmpty(queue)) { 1006accc9626SMatthew G. Knepley PetscInt cell = -1; 1007accc9626SMatthew G. Knepley PetscInt *closure = NULL; 1008accc9626SMatthew G. Knepley PetscInt closureSize, cl, cval; 1009accc9626SMatthew G. Knepley 1010accc9626SMatthew G. Knepley PetscCall(DMPlexPointQueueDequeue(queue, &cell)); 1011accc9626SMatthew G. Knepley PetscCall(DMLabelGetValue(label, cell, &cval)); 1012accc9626SMatthew G. Knepley PetscCall(DMPlexGetTransitiveClosure(dm, cell, PETSC_TRUE, &closureSize, &closure)); 1013accc9626SMatthew G. Knepley /* Mark points in the cell closure that touch the fault */ 1014accc9626SMatthew G. Knepley for (d = 0; d < dim; ++d) { 1015accc9626SMatthew G. Knepley for (cl = 0; cl < closureSize * 2; cl += 2) { 1016accc9626SMatthew G. Knepley const PetscInt clp = closure[cl]; 1017accc9626SMatthew G. Knepley PetscInt clval; 1018accc9626SMatthew G. Knepley 1019accc9626SMatthew G. Knepley if ((clp < pStart[d]) || (clp >= pEnd[d])) continue; 1020accc9626SMatthew G. Knepley PetscCall(DMLabelGetValue(label, clp, &clval)); 1021accc9626SMatthew G. Knepley if (clval == -1) { 1022accc9626SMatthew G. Knepley const PetscInt *cone; 1023accc9626SMatthew G. Knepley PetscInt coneSize, c; 1024accc9626SMatthew G. Knepley 1025accc9626SMatthew G. Knepley /* If a cone point touches the fault, then this point touches the fault */ 1026accc9626SMatthew G. Knepley PetscCall(DMPlexGetCone(dm, clp, &cone)); 1027accc9626SMatthew G. Knepley PetscCall(DMPlexGetConeSize(dm, clp, &coneSize)); 1028accc9626SMatthew G. Knepley for (c = 0; c < coneSize; ++c) { 1029accc9626SMatthew G. Knepley PetscInt cpval; 1030accc9626SMatthew G. Knepley 1031accc9626SMatthew G. Knepley PetscCall(DMLabelGetValue(label, cone[c], &cpval)); 1032accc9626SMatthew G. Knepley if (cpval != -1) { 1033accc9626SMatthew G. Knepley PetscInt dep; 1034accc9626SMatthew G. Knepley 1035accc9626SMatthew G. Knepley PetscCall(DMPlexGetPointDepth(dm, clp, &dep)); 1036accc9626SMatthew G. Knepley clval = cval < 0 ? -(shift + dep) : shift + dep; 1037accc9626SMatthew G. Knepley PetscCall(DMLabelSetValue(label, clp, clval)); 1038accc9626SMatthew G. Knepley break; 1039accc9626SMatthew G. Knepley } 1040accc9626SMatthew G. Knepley } 1041accc9626SMatthew G. Knepley } 1042accc9626SMatthew G. Knepley /* Mark neighbor cells through marked faces (these cells must also touch the fault) */ 1043accc9626SMatthew G. Knepley if (d == dim - 1 && clval != -1) { 1044accc9626SMatthew G. Knepley const PetscInt *support; 1045accc9626SMatthew G. Knepley PetscInt supportSize, s, nval; 1046accc9626SMatthew G. Knepley 1047accc9626SMatthew G. Knepley PetscCall(DMPlexGetSupport(dm, clp, &support)); 1048accc9626SMatthew G. Knepley PetscCall(DMPlexGetSupportSize(dm, clp, &supportSize)); 1049accc9626SMatthew G. Knepley for (s = 0; s < supportSize; ++s) { 1050accc9626SMatthew G. Knepley PetscCall(DMLabelGetValue(label, support[s], &nval)); 1051accc9626SMatthew G. Knepley if (nval == -1) { 1052accc9626SMatthew G. Knepley PetscCall(DMLabelSetValue(label, support[s], clval < 0 ? clval - 1 : clval + 1)); 1053accc9626SMatthew G. Knepley PetscCall(DMPlexPointQueueEnqueue(queue, support[s])); 1054accc9626SMatthew G. Knepley } 1055accc9626SMatthew G. Knepley } 1056accc9626SMatthew G. Knepley } 1057accc9626SMatthew G. Knepley } 1058accc9626SMatthew G. Knepley } 1059accc9626SMatthew G. Knepley PetscCall(DMPlexRestoreTransitiveClosure(dm, cell, PETSC_TRUE, &closureSize, &closure)); 1060accc9626SMatthew G. Knepley } 1061accc9626SMatthew G. Knepley PetscCall(PetscFree2(pStart, pEnd)); 1062accc9626SMatthew G. Knepley PetscFunctionReturn(0); 1063accc9626SMatthew G. Knepley } 1064accc9626SMatthew G. Knepley 1065accc9626SMatthew G. Knepley typedef struct { 1066accc9626SMatthew G. Knepley DM dm; 1067accc9626SMatthew G. Knepley DMPlexPointQueue queue; 1068accc9626SMatthew G. Knepley } PointDivision; 1069accc9626SMatthew G. Knepley 1070d71ae5a4SJacob Faibussowitsch static PetscErrorCode divideCell(DMLabel label, PetscInt p, PetscInt val, void *ctx) 1071d71ae5a4SJacob Faibussowitsch { 1072accc9626SMatthew G. Knepley PointDivision *div = (PointDivision *)ctx; 1073accc9626SMatthew G. Knepley PetscInt cval = val < 0 ? val - 1 : val + 1; 1074accc9626SMatthew G. Knepley const PetscInt *support; 1075accc9626SMatthew G. Knepley PetscInt supportSize, s; 1076accc9626SMatthew G. Knepley 1077accc9626SMatthew G. Knepley PetscFunctionBegin; 1078accc9626SMatthew G. Knepley PetscCall(DMPlexGetSupport(div->dm, p, &support)); 1079accc9626SMatthew G. Knepley PetscCall(DMPlexGetSupportSize(div->dm, p, &supportSize)); 1080accc9626SMatthew G. Knepley for (s = 0; s < supportSize; ++s) { 1081accc9626SMatthew G. Knepley PetscCall(DMLabelSetValue(label, support[s], cval)); 1082accc9626SMatthew G. Knepley PetscCall(DMPlexPointQueueEnqueue(div->queue, support[s])); 1083accc9626SMatthew G. Knepley } 1084accc9626SMatthew G. Knepley PetscFunctionReturn(0); 1085accc9626SMatthew G. Knepley } 1086accc9626SMatthew G. Knepley 1087accc9626SMatthew G. Knepley /* Mark cells by label propagation */ 1088d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexLabelFaultHalo(DM dm, DMLabel faultLabel) 1089d71ae5a4SJacob Faibussowitsch { 1090accc9626SMatthew G. Knepley DMPlexPointQueue queue = NULL; 1091accc9626SMatthew G. Knepley PointDivision div; 1092accc9626SMatthew G. Knepley PetscSF pointSF; 1093accc9626SMatthew G. Knepley IS pointIS; 1094accc9626SMatthew G. Knepley const PetscInt *points; 1095accc9626SMatthew G. Knepley PetscBool empty; 1096accc9626SMatthew G. Knepley PetscInt dim, shift = 100, n, i; 1097accc9626SMatthew G. Knepley 1098accc9626SMatthew G. Knepley PetscFunctionBegin; 1099accc9626SMatthew G. Knepley PetscCall(DMGetDimension(dm, &dim)); 1100accc9626SMatthew G. Knepley PetscCall(DMPlexPointQueueCreate(1024, &queue)); 1101accc9626SMatthew G. Knepley div.dm = dm; 1102accc9626SMatthew G. Knepley div.queue = queue; 1103accc9626SMatthew G. Knepley /* Enqueue cells on fault */ 1104accc9626SMatthew G. Knepley PetscCall(DMLabelGetStratumIS(faultLabel, shift + dim, &pointIS)); 1105accc9626SMatthew G. Knepley if (pointIS) { 1106accc9626SMatthew G. Knepley PetscCall(ISGetLocalSize(pointIS, &n)); 1107accc9626SMatthew G. Knepley PetscCall(ISGetIndices(pointIS, &points)); 110848a46eb9SPierre Jolivet for (i = 0; i < n; ++i) PetscCall(DMPlexPointQueueEnqueue(queue, points[i])); 1109accc9626SMatthew G. Knepley PetscCall(ISRestoreIndices(pointIS, &points)); 1110accc9626SMatthew G. Knepley PetscCall(ISDestroy(&pointIS)); 1111accc9626SMatthew G. Knepley } 1112accc9626SMatthew G. Knepley PetscCall(DMLabelGetStratumIS(faultLabel, -(shift + dim), &pointIS)); 1113accc9626SMatthew G. Knepley if (pointIS) { 1114accc9626SMatthew G. Knepley PetscCall(ISGetLocalSize(pointIS, &n)); 1115accc9626SMatthew G. Knepley PetscCall(ISGetIndices(pointIS, &points)); 111648a46eb9SPierre Jolivet for (i = 0; i < n; ++i) PetscCall(DMPlexPointQueueEnqueue(queue, points[i])); 1117accc9626SMatthew G. Knepley PetscCall(ISRestoreIndices(pointIS, &points)); 1118accc9626SMatthew G. Knepley PetscCall(ISDestroy(&pointIS)); 1119accc9626SMatthew G. Knepley } 1120accc9626SMatthew G. Knepley 1121accc9626SMatthew G. Knepley PetscCall(DMGetPointSF(dm, &pointSF)); 1122accc9626SMatthew G. Knepley PetscCall(DMLabelPropagateBegin(faultLabel, pointSF)); 1123accc9626SMatthew G. Knepley /* While edge queue is not empty: */ 1124accc9626SMatthew G. Knepley PetscCall(DMPlexPointQueueEmptyCollective((PetscObject)dm, queue, &empty)); 1125accc9626SMatthew G. Knepley while (!empty) { 1126accc9626SMatthew G. Knepley PetscCall(DivideCells_Private(dm, faultLabel, queue)); 1127accc9626SMatthew G. Knepley PetscCall(DMLabelPropagatePush(faultLabel, pointSF, divideCell, &div)); 1128accc9626SMatthew G. Knepley PetscCall(DMPlexPointQueueEmptyCollective((PetscObject)dm, queue, &empty)); 1129accc9626SMatthew G. Knepley } 1130accc9626SMatthew G. Knepley PetscCall(DMLabelPropagateEnd(faultLabel, pointSF)); 1131accc9626SMatthew G. Knepley PetscCall(DMPlexPointQueueDestroy(&queue)); 1132accc9626SMatthew G. Knepley PetscFunctionReturn(0); 1133accc9626SMatthew G. Knepley } 1134accc9626SMatthew G. Knepley 1135607ab7a9SMatthew G. Knepley /* 1136faedd622SMatthew G. Knepley We are adding three kinds of points here: 1137607ab7a9SMatthew G. Knepley Replicated: Copies of points which exist in the mesh, such as vertices identified across a fault 1138faedd622SMatthew G. Knepley Non-replicated: Points which exist on the fault, but are not replicated 1139b6dfa339SMatthew G. Knepley Ghost: These are shared fault faces which are not owned by this process. These do not produce hybrid cells and do not replicate 1140607ab7a9SMatthew G. Knepley Hybrid: Entirely new points, such as cohesive cells 1141a6ae58d1SMatthew G. Knepley 1142a6ae58d1SMatthew G. Knepley When creating subsequent cohesive cells, we shift the old hybrid cells to the end of the numbering at 1143a6ae58d1SMatthew G. Knepley each depth so that the new split/hybrid points can be inserted as a block. 1144607ab7a9SMatthew G. Knepley */ 1145d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexConstructCohesiveCells_Internal(DM dm, DMLabel label, DMLabel splitLabel, DM sdm) 1146d71ae5a4SJacob Faibussowitsch { 1147cd0c2139SMatthew G Knepley MPI_Comm comm; 1148607ab7a9SMatthew G. Knepley IS valueIS; 1149607ab7a9SMatthew G. Knepley PetscInt numSP = 0; /* The number of depths for which we have replicated points */ 1150607ab7a9SMatthew G. Knepley const PetscInt *values; /* List of depths for which we have replicated points */ 115118c5995bSMatthew G. Knepley IS *splitIS; 115218c5995bSMatthew G. Knepley IS *unsplitIS; 1153b6dfa339SMatthew G. Knepley IS ghostIS; 1154607ab7a9SMatthew G. Knepley PetscInt *numSplitPoints; /* The number of replicated points at each depth */ 115518c5995bSMatthew G. Knepley PetscInt *numUnsplitPoints; /* The number of non-replicated points at each depth which still give rise to hybrid points */ 115636dbac82SMatthew G. Knepley PetscInt *numHybridPoints; /* The number of new hybrid points at each depth */ 115736dbac82SMatthew G. Knepley PetscInt *numHybridPointsOld; /* The number of existing hybrid points at each depth */ 1158b6dfa339SMatthew G. Knepley PetscInt numGhostPoints; /* The number of unowned, shared fault faces */ 1159607ab7a9SMatthew G. Knepley const PetscInt **splitPoints; /* Replicated points for each depth */ 116018c5995bSMatthew G. Knepley const PetscInt **unsplitPoints; /* Non-replicated points for each depth */ 1161b6dfa339SMatthew G. Knepley const PetscInt *ghostPoints; /* Ghost fault faces */ 1162cd0c2139SMatthew G Knepley PetscSection coordSection; 1163cd0c2139SMatthew G Knepley Vec coordinates; 1164cd0c2139SMatthew G Knepley PetscScalar *coords; 1165a6ae58d1SMatthew G. Knepley PetscInt *depthMax; /* The first hybrid point at each depth in the original mesh */ 1166a6ae58d1SMatthew G. Knepley PetscInt *depthEnd; /* The point limit at each depth in the original mesh */ 1167607ab7a9SMatthew G. Knepley PetscInt *depthShift; /* Number of replicated+hybrid points at each depth */ 1168607ab7a9SMatthew G. Knepley PetscInt *pMaxNew; /* The first replicated point at each depth in the new mesh, hybrids come after this */ 1169607ab7a9SMatthew G. Knepley PetscInt *coneNew, *coneONew, *supportNew; 117018c5995bSMatthew G. Knepley PetscInt shift = 100, shift2 = 200, depth = 0, dep, dim, d, sp, maxConeSize, maxSupportSize, maxConeSizeNew, maxSupportSizeNew, numLabels, vStart, vEnd, pEnd, p, v; 1171cd0c2139SMatthew G Knepley 1172cd0c2139SMatthew G Knepley PetscFunctionBegin; 11739566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)dm, &comm)); 11749566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 11759566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepth(dm, &depth)); 11769566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthStratum(dm, 0, &vStart, &vEnd)); 1177412e9a14SMatthew G. Knepley /* We do not want this label automatically computed, instead we compute it here */ 11789566063dSJacob Faibussowitsch PetscCall(DMCreateLabel(sdm, "celltype")); 1179cd0c2139SMatthew G Knepley /* Count split points and add cohesive cells */ 11809566063dSJacob Faibussowitsch PetscCall(DMPlexGetMaxSizes(dm, &maxConeSize, &maxSupportSize)); 11819566063dSJacob Faibussowitsch PetscCall(PetscMalloc5(depth + 1, &depthMax, depth + 1, &depthEnd, 2 * (depth + 1), &depthShift, depth + 1, &pMaxNew, depth + 1, &numHybridPointsOld)); 11829566063dSJacob Faibussowitsch PetscCall(PetscMalloc7(depth + 1, &splitIS, depth + 1, &unsplitIS, depth + 1, &numSplitPoints, depth + 1, &numUnsplitPoints, depth + 1, &numHybridPoints, depth + 1, &splitPoints, depth + 1, &unsplitPoints)); 1183607ab7a9SMatthew G. Knepley for (d = 0; d <= depth; ++d) { 11849566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthStratum(dm, d, NULL, &pMaxNew[d])); 11859566063dSJacob Faibussowitsch PetscCall(DMPlexGetTensorPrismBounds_Internal(dm, d, &depthMax[d], NULL)); 1186a6ae58d1SMatthew G. Knepley depthEnd[d] = pMaxNew[d]; 1187a6ae58d1SMatthew G. Knepley depthMax[d] = depthMax[d] < 0 ? depthEnd[d] : depthMax[d]; 1188607ab7a9SMatthew G. Knepley numSplitPoints[d] = 0; 118918c5995bSMatthew G. Knepley numUnsplitPoints[d] = 0; 1190607ab7a9SMatthew G. Knepley numHybridPoints[d] = 0; 1191a6ae58d1SMatthew G. Knepley numHybridPointsOld[d] = depthMax[d] < 0 ? 0 : depthEnd[d] - depthMax[d]; 1192607ab7a9SMatthew G. Knepley splitPoints[d] = NULL; 119318c5995bSMatthew G. Knepley unsplitPoints[d] = NULL; 119418c5995bSMatthew G. Knepley splitIS[d] = NULL; 119518c5995bSMatthew G. Knepley unsplitIS[d] = NULL; 119659eef20bSToby Isaac /* we are shifting the existing hybrid points with the stratum behind them, so 119759eef20bSToby Isaac * the split comes at the end of the normal points, i.e., at depthMax[d] */ 119859eef20bSToby Isaac depthShift[2 * d] = depthMax[d]; 119959eef20bSToby Isaac depthShift[2 * d + 1] = 0; 1200607ab7a9SMatthew G. Knepley } 1201b6dfa339SMatthew G. Knepley numGhostPoints = 0; 1202b6dfa339SMatthew G. Knepley ghostPoints = NULL; 1203cd0c2139SMatthew G Knepley if (label) { 12049566063dSJacob Faibussowitsch PetscCall(DMLabelGetValueIS(label, &valueIS)); 12059566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(valueIS, &numSP)); 12069566063dSJacob Faibussowitsch PetscCall(ISGetIndices(valueIS, &values)); 1207cd0c2139SMatthew G Knepley } 1208cd0c2139SMatthew G Knepley for (sp = 0; sp < numSP; ++sp) { 1209cd0c2139SMatthew G Knepley const PetscInt dep = values[sp]; 1210cd0c2139SMatthew G Knepley 1211cd0c2139SMatthew G Knepley if ((dep < 0) || (dep > depth)) continue; 12129566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(label, dep, &splitIS[dep])); 121318c5995bSMatthew G. Knepley if (splitIS[dep]) { 12149566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(splitIS[dep], &numSplitPoints[dep])); 12159566063dSJacob Faibussowitsch PetscCall(ISGetIndices(splitIS[dep], &splitPoints[dep])); 121618c5995bSMatthew G. Knepley } 12179566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(label, shift2 + dep, &unsplitIS[dep])); 121818c5995bSMatthew G. Knepley if (unsplitIS[dep]) { 12199566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(unsplitIS[dep], &numUnsplitPoints[dep])); 12209566063dSJacob Faibussowitsch PetscCall(ISGetIndices(unsplitIS[dep], &unsplitPoints[dep])); 1221cd0c2139SMatthew G Knepley } 1222cd0c2139SMatthew G Knepley } 1223b6dfa339SMatthew G. Knepley PetscCall(DMLabelGetStratumIS(label, shift2 + dim - 1, &ghostIS)); 1224b6dfa339SMatthew G. Knepley if (ghostIS) { 1225b6dfa339SMatthew G. Knepley PetscCall(ISGetLocalSize(ghostIS, &numGhostPoints)); 1226b6dfa339SMatthew G. Knepley PetscCall(ISGetIndices(ghostIS, &ghostPoints)); 1227b6dfa339SMatthew G. Knepley } 1228607ab7a9SMatthew G. Knepley /* Calculate number of hybrid points */ 122918c5995bSMatthew G. Knepley for (d = 1; d <= depth; ++d) numHybridPoints[d] = numSplitPoints[d - 1] + numUnsplitPoints[d - 1]; /* There is a hybrid cell/face/edge for every split face/edge/vertex */ 12302582d50cSToby Isaac for (d = 0; d <= depth; ++d) depthShift[2 * d + 1] = numSplitPoints[d] + numHybridPoints[d]; 12319566063dSJacob Faibussowitsch PetscCall(DMPlexShiftPointSetUp_Internal(depth, depthShift)); 123259eef20bSToby Isaac /* the end of the points in this stratum that come before the new points: 123359eef20bSToby Isaac * shifting pMaxNew[d] gets the new start of the next stratum, then count back the old hybrid points and the newly 123459eef20bSToby Isaac * added points */ 12352582d50cSToby Isaac for (d = 0; d <= depth; ++d) pMaxNew[d] = DMPlexShiftPoint_Internal(pMaxNew[d], depth, depthShift) - (numHybridPointsOld[d] + numSplitPoints[d] + numHybridPoints[d]); 12369566063dSJacob Faibussowitsch PetscCall(DMPlexShiftSizes_Internal(dm, depthShift, sdm)); 1237cd0c2139SMatthew G Knepley /* Step 3: Set cone/support sizes for new points */ 1238cd0c2139SMatthew G Knepley for (dep = 0; dep <= depth; ++dep) { 1239cd0c2139SMatthew G Knepley for (p = 0; p < numSplitPoints[dep]; ++p) { 1240cd0c2139SMatthew G Knepley const PetscInt oldp = splitPoints[dep][p]; 12412582d50cSToby Isaac const PetscInt newp = DMPlexShiftPoint_Internal(oldp, depth, depthShift) /*oldp + depthOffset[dep]*/; 12424c367dbcSMatthew G. Knepley const PetscInt splitp = p + pMaxNew[dep]; 1243cd0c2139SMatthew G Knepley const PetscInt *support; 1244394c2f0fSMatthew G. Knepley DMPolytopeType ct; 12454c367dbcSMatthew G. Knepley PetscInt coneSize, supportSize, qf, qn, qp, e; 1246cd0c2139SMatthew G Knepley 12479566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, oldp, &coneSize)); 12489566063dSJacob Faibussowitsch PetscCall(DMPlexSetConeSize(sdm, splitp, coneSize)); 12499566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dm, oldp, &supportSize)); 12509566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupportSize(sdm, splitp, supportSize)); 12519566063dSJacob Faibussowitsch PetscCall(DMPlexGetCellType(dm, oldp, &ct)); 12529566063dSJacob Faibussowitsch PetscCall(DMPlexSetCellType(sdm, splitp, ct)); 1253cd0c2139SMatthew G Knepley if (dep == depth - 1) { 12544c367dbcSMatthew G. Knepley const PetscInt hybcell = p + pMaxNew[dep + 1] + numSplitPoints[dep + 1]; 12554c367dbcSMatthew G. Knepley 1256cd0c2139SMatthew G Knepley /* Add cohesive cells, they are prisms */ 12579566063dSJacob Faibussowitsch PetscCall(DMPlexSetConeSize(sdm, hybcell, 2 + coneSize)); 1258412e9a14SMatthew G. Knepley switch (coneSize) { 1259d71ae5a4SJacob Faibussowitsch case 2: 1260d71ae5a4SJacob Faibussowitsch PetscCall(DMPlexSetCellType(sdm, hybcell, DM_POLYTOPE_SEG_PRISM_TENSOR)); 1261d71ae5a4SJacob Faibussowitsch break; 1262d71ae5a4SJacob Faibussowitsch case 3: 1263d71ae5a4SJacob Faibussowitsch PetscCall(DMPlexSetCellType(sdm, hybcell, DM_POLYTOPE_TRI_PRISM_TENSOR)); 1264d71ae5a4SJacob Faibussowitsch break; 1265d71ae5a4SJacob Faibussowitsch case 4: 1266d71ae5a4SJacob Faibussowitsch PetscCall(DMPlexSetCellType(sdm, hybcell, DM_POLYTOPE_QUAD_PRISM_TENSOR)); 1267d71ae5a4SJacob Faibussowitsch break; 1268412e9a14SMatthew G. Knepley } 1269b6dfa339SMatthew G. Knepley /* Shared fault faces with only one support cell now have two with the cohesive cell */ 1270b6dfa339SMatthew G. Knepley /* TODO Check thaat oldp has rootdegree == 1 */ 1271b6dfa339SMatthew G. Knepley if (supportSize == 1) { 1272b6dfa339SMatthew G. Knepley const PetscInt *support; 1273b6dfa339SMatthew G. Knepley PetscInt val; 1274b6dfa339SMatthew G. Knepley 1275b6dfa339SMatthew G. Knepley PetscCall(DMPlexGetSupport(dm, oldp, &support)); 1276b6dfa339SMatthew G. Knepley PetscCall(DMLabelGetValue(label, support[0], &val)); 1277b6dfa339SMatthew G. Knepley if (val < 0) PetscCall(DMPlexSetSupportSize(sdm, splitp, 2)); 1278b6dfa339SMatthew G. Knepley else PetscCall(DMPlexSetSupportSize(sdm, newp, 2)); 1279b6dfa339SMatthew G. Knepley } 1280cd0c2139SMatthew G Knepley } else if (dep == 0) { 12814c367dbcSMatthew G. Knepley const PetscInt hybedge = p + pMaxNew[dep + 1] + numSplitPoints[dep + 1]; 1282cd0c2139SMatthew G Knepley 12839566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(dm, oldp, &support)); 12844c367dbcSMatthew G. Knepley for (e = 0, qn = 0, qp = 0, qf = 0; e < supportSize; ++e) { 1285cd0c2139SMatthew G Knepley PetscInt val; 1286cd0c2139SMatthew G Knepley 12879566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, support[e], &val)); 12884c367dbcSMatthew G. Knepley if (val == 1) ++qf; 12894c367dbcSMatthew G. Knepley if ((val == 1) || (val == (shift + 1))) ++qn; 12904c367dbcSMatthew G. Knepley if ((val == 1) || (val == -(shift + 1))) ++qp; 1291cd0c2139SMatthew G Knepley } 12924c367dbcSMatthew G. Knepley /* Split old vertex: Edges into original vertex and new cohesive edge */ 12939566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupportSize(sdm, newp, qn + 1)); 12944c367dbcSMatthew G. Knepley /* Split new vertex: Edges into split vertex and new cohesive edge */ 12959566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupportSize(sdm, splitp, qp + 1)); 12964c367dbcSMatthew G. Knepley /* Add hybrid edge */ 12979566063dSJacob Faibussowitsch PetscCall(DMPlexSetConeSize(sdm, hybedge, 2)); 12989566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupportSize(sdm, hybedge, qf)); 12999566063dSJacob Faibussowitsch PetscCall(DMPlexSetCellType(sdm, hybedge, DM_POLYTOPE_POINT_PRISM_TENSOR)); 1300cd0c2139SMatthew G Knepley } else if (dep == dim - 2) { 13014c367dbcSMatthew G. Knepley const PetscInt hybface = p + pMaxNew[dep + 1] + numSplitPoints[dep + 1]; 13024c367dbcSMatthew G. Knepley 13039566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(dm, oldp, &support)); 13044c367dbcSMatthew G. Knepley for (e = 0, qn = 0, qp = 0, qf = 0; e < supportSize; ++e) { 1305cd0c2139SMatthew G Knepley PetscInt val; 1306cd0c2139SMatthew G Knepley 13079566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, support[e], &val)); 13084c367dbcSMatthew G. Knepley if (val == dim - 1) ++qf; 13094c367dbcSMatthew G. Knepley if ((val == dim - 1) || (val == (shift + dim - 1))) ++qn; 13104c367dbcSMatthew G. Knepley if ((val == dim - 1) || (val == -(shift + dim - 1))) ++qp; 1311cd0c2139SMatthew G Knepley } 13124c367dbcSMatthew G. Knepley /* Split old edge: Faces into original edge and cohesive face (positive side?) */ 13139566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupportSize(sdm, newp, qn + 1)); 13144c367dbcSMatthew G. Knepley /* Split new edge: Faces into split edge and cohesive face (negative side?) */ 13159566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupportSize(sdm, splitp, qp + 1)); 13164c367dbcSMatthew G. Knepley /* Add hybrid face */ 13179566063dSJacob Faibussowitsch PetscCall(DMPlexSetConeSize(sdm, hybface, 4)); 13189566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupportSize(sdm, hybface, qf)); 13199566063dSJacob Faibussowitsch PetscCall(DMPlexSetCellType(sdm, hybface, DM_POLYTOPE_SEG_PRISM_TENSOR)); 1320cd0c2139SMatthew G Knepley } 1321cd0c2139SMatthew G Knepley } 1322cd0c2139SMatthew G Knepley } 132318c5995bSMatthew G. Knepley for (dep = 0; dep <= depth; ++dep) { 132418c5995bSMatthew G. Knepley for (p = 0; p < numUnsplitPoints[dep]; ++p) { 132518c5995bSMatthew G. Knepley const PetscInt oldp = unsplitPoints[dep][p]; 13262582d50cSToby Isaac const PetscInt newp = DMPlexShiftPoint_Internal(oldp, depth, depthShift) /*oldp + depthOffset[dep]*/; 132718c5995bSMatthew G. Knepley const PetscInt *support; 1328da1dd7e4SMatthew G. Knepley PetscInt coneSize, supportSize, qf, e, s; 132918c5995bSMatthew G. Knepley 13309566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, oldp, &coneSize)); 13319566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dm, oldp, &supportSize)); 13329566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(dm, oldp, &support)); 133318c5995bSMatthew G. Knepley if (dep == 0) { 133418c5995bSMatthew G. Knepley const PetscInt hybedge = p + pMaxNew[dep + 1] + numSplitPoints[dep + 1] + numSplitPoints[dep]; 133518c5995bSMatthew G. Knepley 133639254ff6SMatthew G. Knepley /* Unsplit vertex: Edges into original vertex, split edges, and new cohesive edge twice */ 133739254ff6SMatthew G. Knepley for (s = 0, qf = 0; s < supportSize; ++s, ++qf) { 13389566063dSJacob Faibussowitsch PetscCall(PetscFindInt(support[s], numSplitPoints[dep + 1], splitPoints[dep + 1], &e)); 133939254ff6SMatthew G. Knepley if (e >= 0) ++qf; 134039254ff6SMatthew G. Knepley } 13419566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupportSize(sdm, newp, qf + 2)); 134218c5995bSMatthew G. Knepley /* Add hybrid edge */ 13439566063dSJacob Faibussowitsch PetscCall(DMPlexSetConeSize(sdm, hybedge, 2)); 1344e1757548SMatthew G. Knepley for (e = 0, qf = 0; e < supportSize; ++e) { 1345e1757548SMatthew G. Knepley PetscInt val; 1346e1757548SMatthew G. Knepley 13479566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, support[e], &val)); 1348e1757548SMatthew G. Knepley /* Split and unsplit edges produce hybrid faces */ 1349da1dd7e4SMatthew G. Knepley if (val == 1) ++qf; 1350da1dd7e4SMatthew G. Knepley if (val == (shift2 + 1)) ++qf; 1351e1757548SMatthew G. Knepley } 13529566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupportSize(sdm, hybedge, qf)); 13539566063dSJacob Faibussowitsch PetscCall(DMPlexSetCellType(sdm, hybedge, DM_POLYTOPE_POINT_PRISM_TENSOR)); 135418c5995bSMatthew G. Knepley } else if (dep == dim - 2) { 135518c5995bSMatthew G. Knepley const PetscInt hybface = p + pMaxNew[dep + 1] + numSplitPoints[dep + 1] + numSplitPoints[dep]; 1356cd0c2139SMatthew G Knepley PetscInt val; 1357cd0c2139SMatthew G Knepley 1358da1dd7e4SMatthew G. Knepley for (e = 0, qf = 0; e < supportSize; ++e) { 13599566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, support[e], &val)); 1360da1dd7e4SMatthew G. Knepley if (val == dim - 1) qf += 2; 1361da1dd7e4SMatthew G. Knepley else ++qf; 1362cd0c2139SMatthew G Knepley } 136318c5995bSMatthew G. Knepley /* Unsplit edge: Faces into original edge, split face, and cohesive face twice */ 13649566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupportSize(sdm, newp, qf + 2)); 136518c5995bSMatthew G. Knepley /* Add hybrid face */ 1366da1dd7e4SMatthew G. Knepley for (e = 0, qf = 0; e < supportSize; ++e) { 13679566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, support[e], &val)); 1368da1dd7e4SMatthew G. Knepley if (val == dim - 1) ++qf; 1369da1dd7e4SMatthew G. Knepley } 13709566063dSJacob Faibussowitsch PetscCall(DMPlexSetConeSize(sdm, hybface, 4)); 13719566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupportSize(sdm, hybface, qf)); 13729566063dSJacob Faibussowitsch PetscCall(DMPlexSetCellType(sdm, hybface, DM_POLYTOPE_SEG_PRISM_TENSOR)); 1373cd0c2139SMatthew G Knepley } 1374cd0c2139SMatthew G Knepley } 1375cd0c2139SMatthew G Knepley } 1376cd0c2139SMatthew G Knepley /* Step 4: Setup split DM */ 13779566063dSJacob Faibussowitsch PetscCall(DMSetUp(sdm)); 13789566063dSJacob Faibussowitsch PetscCall(DMPlexShiftPoints_Internal(dm, depthShift, sdm)); 13799566063dSJacob Faibussowitsch PetscCall(DMPlexGetMaxSizes(sdm, &maxConeSizeNew, &maxSupportSizeNew)); 13809566063dSJacob Faibussowitsch PetscCall(PetscMalloc3(PetscMax(maxConeSize, maxConeSizeNew) * 3, &coneNew, PetscMax(maxConeSize, maxConeSizeNew) * 3, &coneONew, PetscMax(maxSupportSize, maxSupportSizeNew), &supportNew)); 1381cd0c2139SMatthew G Knepley /* Step 6: Set cones and supports for new points */ 1382cd0c2139SMatthew G Knepley for (dep = 0; dep <= depth; ++dep) { 1383cd0c2139SMatthew G Knepley for (p = 0; p < numSplitPoints[dep]; ++p) { 1384cd0c2139SMatthew G Knepley const PetscInt oldp = splitPoints[dep][p]; 13852582d50cSToby Isaac const PetscInt newp = DMPlexShiftPoint_Internal(oldp, depth, depthShift) /*oldp + depthOffset[dep]*/; 13864c367dbcSMatthew G. Knepley const PetscInt splitp = p + pMaxNew[dep]; 1387cd0c2139SMatthew G Knepley const PetscInt *cone, *support, *ornt; 1388b5a892a1SMatthew G. Knepley DMPolytopeType ct; 13894c367dbcSMatthew G. Knepley PetscInt coneSize, supportSize, q, qf, qn, qp, v, e, s; 1390cd0c2139SMatthew G Knepley 13919566063dSJacob Faibussowitsch PetscCall(DMPlexGetCellType(dm, oldp, &ct)); 13929566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, oldp, &coneSize)); 13939566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, oldp, &cone)); 13949566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeOrientation(dm, oldp, &ornt)); 13959566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dm, oldp, &supportSize)); 13969566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(dm, oldp, &support)); 1397cd0c2139SMatthew G Knepley if (dep == depth - 1) { 139896a07cd0SMatthew G. Knepley PetscBool hasUnsplit = PETSC_FALSE; 13994c367dbcSMatthew G. Knepley const PetscInt hybcell = p + pMaxNew[dep + 1] + numSplitPoints[dep + 1]; 1400cd0c2139SMatthew G Knepley const PetscInt *supportF; 1401cd0c2139SMatthew G Knepley 1402b6dfa339SMatthew G. Knepley coneONew[0] = coneONew[1] = -1000; 1403cd0c2139SMatthew G Knepley /* Split face: copy in old face to new face to start */ 14049566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(sdm, newp, &supportF)); 14059566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupport(sdm, splitp, supportF)); 1406cd0c2139SMatthew G Knepley /* Split old face: old vertices/edges in cone so no change */ 1407cd0c2139SMatthew G Knepley /* Split new face: new vertices/edges in cone */ 1408cd0c2139SMatthew G Knepley for (q = 0; q < coneSize; ++q) { 14099566063dSJacob Faibussowitsch PetscCall(PetscFindInt(cone[q], numSplitPoints[dep - 1], splitPoints[dep - 1], &v)); 141018c5995bSMatthew G. Knepley if (v < 0) { 14119566063dSJacob Faibussowitsch PetscCall(PetscFindInt(cone[q], numUnsplitPoints[dep - 1], unsplitPoints[dep - 1], &v)); 141263a3b9bcSJacob Faibussowitsch PetscCheck(v >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Could not locate point %" PetscInt_FMT " in split or unsplit points of depth %" PetscInt_FMT, cone[q], dep - 1); 14132582d50cSToby Isaac coneNew[2 + q] = DMPlexShiftPoint_Internal(cone[q], depth, depthShift) /*cone[q] + depthOffset[dep-1]*/; 141496a07cd0SMatthew G. Knepley hasUnsplit = PETSC_TRUE; 141518c5995bSMatthew G. Knepley } else { 14164c367dbcSMatthew G. Knepley coneNew[2 + q] = v + pMaxNew[dep - 1]; 1417163235baSMatthew G. Knepley if (dep > 1) { 1418163235baSMatthew G. Knepley const PetscInt *econe; 1419163235baSMatthew G. Knepley PetscInt econeSize, r, vs, vu; 1420163235baSMatthew G. Knepley 14219566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, cone[q], &econeSize)); 14229566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, cone[q], &econe)); 1423163235baSMatthew G. Knepley for (r = 0; r < econeSize; ++r) { 14249566063dSJacob Faibussowitsch PetscCall(PetscFindInt(econe[r], numSplitPoints[dep - 2], splitPoints[dep - 2], &vs)); 14259566063dSJacob Faibussowitsch PetscCall(PetscFindInt(econe[r], numUnsplitPoints[dep - 2], unsplitPoints[dep - 2], &vu)); 1426163235baSMatthew G. Knepley if (vs >= 0) continue; 142763a3b9bcSJacob Faibussowitsch PetscCheck(vu >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Could not locate point %" PetscInt_FMT " in split or unsplit points of depth %" PetscInt_FMT, econe[r], dep - 2); 1428163235baSMatthew G. Knepley hasUnsplit = PETSC_TRUE; 1429163235baSMatthew G. Knepley } 1430163235baSMatthew G. Knepley } 1431cd0c2139SMatthew G Knepley } 1432cd0c2139SMatthew G Knepley } 14339566063dSJacob Faibussowitsch PetscCall(DMPlexSetCone(sdm, splitp, &coneNew[2])); 14349566063dSJacob Faibussowitsch PetscCall(DMPlexSetConeOrientation(sdm, splitp, ornt)); 1435e537020bSMatthew G. Knepley /* Face support */ 1436b6dfa339SMatthew G. Knepley PetscInt vals[2]; 1437cd0c2139SMatthew G Knepley 1438b6dfa339SMatthew G. Knepley PetscCall(DMLabelGetValue(label, support[0], &vals[0])); 1439b6dfa339SMatthew G. Knepley if (supportSize > 1) PetscCall(DMLabelGetValue(label, support[1], &vals[1])); 1440b6dfa339SMatthew G. Knepley else vals[1] = -vals[0]; 1441b6dfa339SMatthew G. Knepley PetscCheck(vals[0] * vals[1] < 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid support labels %" PetscInt_FMT " %" PetscInt_FMT, vals[0], vals[1]); 1442b6dfa339SMatthew G. Knepley 1443b6dfa339SMatthew G. Knepley for (s = 0; s < 2; ++s) { 1444b6dfa339SMatthew G. Knepley if (s >= supportSize) { 1445b6dfa339SMatthew G. Knepley if (vals[s] < 0) { 1446b6dfa339SMatthew G. Knepley /* Ghost old face: Replace negative side cell with cohesive cell */ 1447accc9626SMatthew G. Knepley PetscCall(DMPlexInsertSupport(sdm, newp, s, hybcell)); 1448b6dfa339SMatthew G. Knepley } else { 1449b6dfa339SMatthew G. Knepley /* Ghost new face: Replace positive side cell with cohesive cell */ 1450accc9626SMatthew G. Knepley PetscCall(DMPlexInsertSupport(sdm, splitp, s, hybcell)); 1451b6dfa339SMatthew G. Knepley } 1452b6dfa339SMatthew G. Knepley } else { 1453b6dfa339SMatthew G. Knepley if (vals[s] < 0) { 1454cd0c2139SMatthew G Knepley /* Split old face: Replace negative side cell with cohesive cell */ 14559566063dSJacob Faibussowitsch PetscCall(DMPlexInsertSupport(sdm, newp, s, hybcell)); 1456cd0c2139SMatthew G Knepley } else { 1457cd0c2139SMatthew G Knepley /* Split new face: Replace positive side cell with cohesive cell */ 14589566063dSJacob Faibussowitsch PetscCall(DMPlexInsertSupport(sdm, splitp, s, hybcell)); 1459b6dfa339SMatthew G. Knepley } 1460b6dfa339SMatthew G. Knepley } 1461b6dfa339SMatthew G. Knepley } 1462b6dfa339SMatthew G. Knepley /* Get orientation for cohesive face using the positive side cell */ 1463e537020bSMatthew G. Knepley { 1464e537020bSMatthew G. Knepley const PetscInt *ncone, *nconeO; 1465b6dfa339SMatthew G. Knepley PetscInt nconeSize, nc, ocell; 1466accc9626SMatthew G. Knepley PetscBool flip = PETSC_FALSE; 1467e537020bSMatthew G. Knepley 14689371c9d4SSatish Balay if (supportSize > 1) { 14699371c9d4SSatish Balay ocell = vals[0] < 0 ? support[1] : support[0]; 14709371c9d4SSatish Balay } else { 14719371c9d4SSatish Balay ocell = support[0]; 14729371c9d4SSatish Balay flip = vals[0] < 0 ? PETSC_TRUE : PETSC_FALSE; 14739371c9d4SSatish Balay } 1474b6dfa339SMatthew G. Knepley PetscCall(DMPlexGetConeSize(dm, ocell, &nconeSize)); 1475b6dfa339SMatthew G. Knepley PetscCall(DMPlexGetCone(dm, ocell, &ncone)); 1476e1a13daeSMatthew G. Knepley PetscCall(DMPlexGetConeOrientation(dm, ocell, &nconeO)); 1477e537020bSMatthew G. Knepley for (nc = 0; nc < nconeSize; ++nc) { 1478e537020bSMatthew G. Knepley if (ncone[nc] == oldp) { 1479b6dfa339SMatthew G. Knepley coneONew[0] = flip ? -(nconeO[nc] + 1) : nconeO[nc]; 1480e537020bSMatthew G. Knepley break; 1481cd0c2139SMatthew G Knepley } 1482cd0c2139SMatthew G Knepley } 1483b6dfa339SMatthew G. Knepley PetscCheck(nc < nconeSize, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Could not locate face %" PetscInt_FMT " in neighboring cell %" PetscInt_FMT, oldp, ocell); 1484e537020bSMatthew G. Knepley } 14854c367dbcSMatthew G. Knepley /* Cohesive cell: Old and new split face, then new cohesive faces */ 1486b6dfa339SMatthew G. Knepley { 1487b6dfa339SMatthew G. Knepley const PetscInt No = DMPolytopeTypeGetNumArrangments(ct) / 2; 1488b6dfa339SMatthew G. Knepley PetscCheck((coneONew[0] >= -No) && (coneONew[0] < No), PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid %s orientation %" PetscInt_FMT, DMPolytopeTypes[ct], coneONew[0]); 1489b6dfa339SMatthew G. Knepley } 1490b5a892a1SMatthew G. Knepley const PetscInt *arr = DMPolytopeTypeGetArrangment(ct, coneONew[0]); 1491b5a892a1SMatthew G. Knepley 1492fd4b9f15SMatthew G. Knepley coneNew[0] = newp; /* Extracted negative side orientation above */ 14934c367dbcSMatthew G. Knepley coneNew[1] = splitp; 14944c367dbcSMatthew G. Knepley coneONew[1] = coneONew[0]; 1495e537020bSMatthew G. Knepley for (q = 0; q < coneSize; ++q) { 1496412e9a14SMatthew G. Knepley /* Hybrid faces must follow order from oriented end face */ 1497b5a892a1SMatthew G. Knepley const PetscInt qa = arr[q * 2 + 0]; 1498b5a892a1SMatthew G. Knepley const PetscInt qo = arr[q * 2 + 1]; 1499b5a892a1SMatthew G. Knepley DMPolytopeType ft = dep == 2 ? DM_POLYTOPE_SEGMENT : DM_POLYTOPE_POINT; 1500412e9a14SMatthew G. Knepley 15019566063dSJacob Faibussowitsch PetscCall(PetscFindInt(cone[qa], numSplitPoints[dep - 1], splitPoints[dep - 1], &v)); 150218c5995bSMatthew G. Knepley if (v < 0) { 15039566063dSJacob Faibussowitsch PetscCall(PetscFindInt(cone[qa], numUnsplitPoints[dep - 1], unsplitPoints[dep - 1], &v)); 150418c5995bSMatthew G. Knepley coneNew[2 + q] = v + pMaxNew[dep] + numSplitPoints[dep] + numSplitPoints[dep - 1]; 150518c5995bSMatthew G. Knepley } else { 150618c5995bSMatthew G. Knepley coneNew[2 + q] = v + pMaxNew[dep] + numSplitPoints[dep]; 150718c5995bSMatthew G. Knepley } 1508b5a892a1SMatthew G. Knepley coneONew[2 + q] = DMPolytopeTypeComposeOrientation(ft, qo, ornt[qa]); 1509e537020bSMatthew G. Knepley } 15109566063dSJacob Faibussowitsch PetscCall(DMPlexSetCone(sdm, hybcell, coneNew)); 15119566063dSJacob Faibussowitsch PetscCall(DMPlexSetConeOrientation(sdm, hybcell, coneONew)); 151296a07cd0SMatthew G. Knepley /* Label the hybrid cells on the boundary of the split */ 15139566063dSJacob Faibussowitsch if (hasUnsplit) PetscCall(DMLabelSetValue(label, -hybcell, dim)); 1514cd0c2139SMatthew G Knepley } else if (dep == 0) { 15154c367dbcSMatthew G. Knepley const PetscInt hybedge = p + pMaxNew[dep + 1] + numSplitPoints[dep + 1]; 1516cd0c2139SMatthew G Knepley 1517cd0c2139SMatthew G Knepley /* Split old vertex: Edges in old split faces and new cohesive edge */ 15184c367dbcSMatthew G. Knepley for (e = 0, qn = 0; e < supportSize; ++e) { 1519cd0c2139SMatthew G Knepley PetscInt val; 1520cd0c2139SMatthew G Knepley 15219566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, support[e], &val)); 1522ad540459SPierre Jolivet if ((val == 1) || (val == (shift + 1))) supportNew[qn++] = DMPlexShiftPoint_Internal(support[e], depth, depthShift) /*support[e] + depthOffset[dep+1]*/; 1523cd0c2139SMatthew G Knepley } 15244c367dbcSMatthew G. Knepley supportNew[qn] = hybedge; 15259566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupport(sdm, newp, supportNew)); 1526cd0c2139SMatthew G Knepley /* Split new vertex: Edges in new split faces and new cohesive edge */ 15274c367dbcSMatthew G. Knepley for (e = 0, qp = 0; e < supportSize; ++e) { 1528cd0c2139SMatthew G Knepley PetscInt val, edge; 1529cd0c2139SMatthew G Knepley 15309566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, support[e], &val)); 1531cd0c2139SMatthew G Knepley if (val == 1) { 15329566063dSJacob Faibussowitsch PetscCall(PetscFindInt(support[e], numSplitPoints[dep + 1], splitPoints[dep + 1], &edge)); 153363a3b9bcSJacob Faibussowitsch PetscCheck(edge >= 0, comm, PETSC_ERR_ARG_WRONG, "Edge %" PetscInt_FMT " is not a split edge", support[e]); 15344c367dbcSMatthew G. Knepley supportNew[qp++] = edge + pMaxNew[dep + 1]; 1535cd0c2139SMatthew G Knepley } else if (val == -(shift + 1)) { 15362582d50cSToby Isaac supportNew[qp++] = DMPlexShiftPoint_Internal(support[e], depth, depthShift) /*support[e] + depthOffset[dep+1]*/; 1537cd0c2139SMatthew G Knepley } 1538cd0c2139SMatthew G Knepley } 15394c367dbcSMatthew G. Knepley supportNew[qp] = hybedge; 15409566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupport(sdm, splitp, supportNew)); 15414c367dbcSMatthew G. Knepley /* Hybrid edge: Old and new split vertex */ 1542cd0c2139SMatthew G Knepley coneNew[0] = newp; 1543cd0c2139SMatthew G Knepley coneNew[1] = splitp; 15449566063dSJacob Faibussowitsch PetscCall(DMPlexSetCone(sdm, hybedge, coneNew)); 15454c367dbcSMatthew G. Knepley for (e = 0, qf = 0; e < supportSize; ++e) { 15464c367dbcSMatthew G. Knepley PetscInt val, edge; 15474c367dbcSMatthew G. Knepley 15489566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, support[e], &val)); 15494c367dbcSMatthew G. Knepley if (val == 1) { 15509566063dSJacob Faibussowitsch PetscCall(PetscFindInt(support[e], numSplitPoints[dep + 1], splitPoints[dep + 1], &edge)); 155163a3b9bcSJacob Faibussowitsch PetscCheck(edge >= 0, comm, PETSC_ERR_ARG_WRONG, "Edge %" PetscInt_FMT " is not a split edge", support[e]); 15524c367dbcSMatthew G. Knepley supportNew[qf++] = edge + pMaxNew[dep + 2] + numSplitPoints[dep + 2]; 15534c367dbcSMatthew G. Knepley } 15544c367dbcSMatthew G. Knepley } 15559566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupport(sdm, hybedge, supportNew)); 1556cd0c2139SMatthew G Knepley } else if (dep == dim - 2) { 15574c367dbcSMatthew G. Knepley const PetscInt hybface = p + pMaxNew[dep + 1] + numSplitPoints[dep + 1]; 15584c367dbcSMatthew G. Knepley 1559cd0c2139SMatthew G Knepley /* Split old edge: old vertices in cone so no change */ 1560cd0c2139SMatthew G Knepley /* Split new edge: new vertices in cone */ 1561cd0c2139SMatthew G Knepley for (q = 0; q < coneSize; ++q) { 15629566063dSJacob Faibussowitsch PetscCall(PetscFindInt(cone[q], numSplitPoints[dep - 1], splitPoints[dep - 1], &v)); 1563e1757548SMatthew G. Knepley if (v < 0) { 15649566063dSJacob Faibussowitsch PetscCall(PetscFindInt(cone[q], numUnsplitPoints[dep - 1], unsplitPoints[dep - 1], &v)); 156563a3b9bcSJacob Faibussowitsch PetscCheck(v >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Could not locate point %" PetscInt_FMT " in split or unsplit points of depth %" PetscInt_FMT, cone[q], dep - 1); 15662582d50cSToby Isaac coneNew[q] = DMPlexShiftPoint_Internal(cone[q], depth, depthShift) /*cone[q] + depthOffset[dep-1]*/; 1567e1757548SMatthew G. Knepley } else { 15684c367dbcSMatthew G. Knepley coneNew[q] = v + pMaxNew[dep - 1]; 1569cd0c2139SMatthew G Knepley } 1570e1757548SMatthew G. Knepley } 15719566063dSJacob Faibussowitsch PetscCall(DMPlexSetCone(sdm, splitp, coneNew)); 1572cd0c2139SMatthew G Knepley /* Split old edge: Faces in positive side cells and old split faces */ 1573cd0c2139SMatthew G Knepley for (e = 0, q = 0; e < supportSize; ++e) { 1574cd0c2139SMatthew G Knepley PetscInt val; 1575cd0c2139SMatthew G Knepley 15769566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, support[e], &val)); 15774c367dbcSMatthew G. Knepley if (val == dim - 1) { 15782582d50cSToby Isaac supportNew[q++] = DMPlexShiftPoint_Internal(support[e], depth, depthShift) /*support[e] + depthOffset[dep+1]*/; 15794c367dbcSMatthew G. Knepley } else if (val == (shift + dim - 1)) { 15802582d50cSToby Isaac supportNew[q++] = DMPlexShiftPoint_Internal(support[e], depth, depthShift) /*support[e] + depthOffset[dep+1]*/; 1581cd0c2139SMatthew G Knepley } 1582cd0c2139SMatthew G Knepley } 1583b279cd2aSMatthew G. Knepley supportNew[q++] = p + pMaxNew[dep + 1] + numSplitPoints[dep + 1]; 15849566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupport(sdm, newp, supportNew)); 1585cd0c2139SMatthew G Knepley /* Split new edge: Faces in negative side cells and new split faces */ 1586cd0c2139SMatthew G Knepley for (e = 0, q = 0; e < supportSize; ++e) { 1587cd0c2139SMatthew G Knepley PetscInt val, face; 1588cd0c2139SMatthew G Knepley 15899566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, support[e], &val)); 1590cd0c2139SMatthew G Knepley if (val == dim - 1) { 15919566063dSJacob Faibussowitsch PetscCall(PetscFindInt(support[e], numSplitPoints[dep + 1], splitPoints[dep + 1], &face)); 159263a3b9bcSJacob Faibussowitsch PetscCheck(face >= 0, comm, PETSC_ERR_ARG_WRONG, "Face %" PetscInt_FMT " is not a split face", support[e]); 15934c367dbcSMatthew G. Knepley supportNew[q++] = face + pMaxNew[dep + 1]; 1594cd0c2139SMatthew G Knepley } else if (val == -(shift + dim - 1)) { 15952582d50cSToby Isaac supportNew[q++] = DMPlexShiftPoint_Internal(support[e], depth, depthShift) /*support[e] + depthOffset[dep+1]*/; 1596cd0c2139SMatthew G Knepley } 1597cd0c2139SMatthew G Knepley } 1598b279cd2aSMatthew G. Knepley supportNew[q++] = p + pMaxNew[dep + 1] + numSplitPoints[dep + 1]; 15999566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupport(sdm, splitp, supportNew)); 16004c367dbcSMatthew G. Knepley /* Hybrid face */ 16014c367dbcSMatthew G. Knepley coneNew[0] = newp; 16024c367dbcSMatthew G. Knepley coneNew[1] = splitp; 16034c367dbcSMatthew G. Knepley for (v = 0; v < coneSize; ++v) { 16044c367dbcSMatthew G. Knepley PetscInt vertex; 16059566063dSJacob Faibussowitsch PetscCall(PetscFindInt(cone[v], numSplitPoints[dep - 1], splitPoints[dep - 1], &vertex)); 1606e1757548SMatthew G. Knepley if (vertex < 0) { 16079566063dSJacob Faibussowitsch PetscCall(PetscFindInt(cone[v], numUnsplitPoints[dep - 1], unsplitPoints[dep - 1], &vertex)); 160863a3b9bcSJacob Faibussowitsch PetscCheck(vertex >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Could not locate point %" PetscInt_FMT " in split or unsplit points of depth %" PetscInt_FMT, cone[v], dep - 1); 1609e1757548SMatthew G. Knepley coneNew[2 + v] = vertex + pMaxNew[dep] + numSplitPoints[dep] + numSplitPoints[dep - 1]; 1610e1757548SMatthew G. Knepley } else { 16114c367dbcSMatthew G. Knepley coneNew[2 + v] = vertex + pMaxNew[dep] + numSplitPoints[dep]; 16124c367dbcSMatthew G. Knepley } 1613e1757548SMatthew G. Knepley } 16149566063dSJacob Faibussowitsch PetscCall(DMPlexSetCone(sdm, hybface, coneNew)); 16154c367dbcSMatthew G. Knepley for (e = 0, qf = 0; e < supportSize; ++e) { 16164c367dbcSMatthew G. Knepley PetscInt val, face; 16174c367dbcSMatthew G. Knepley 16189566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, support[e], &val)); 16194c367dbcSMatthew G. Knepley if (val == dim - 1) { 16209566063dSJacob Faibussowitsch PetscCall(PetscFindInt(support[e], numSplitPoints[dep + 1], splitPoints[dep + 1], &face)); 162163a3b9bcSJacob Faibussowitsch PetscCheck(face >= 0, comm, PETSC_ERR_ARG_WRONG, "Face %" PetscInt_FMT " is not a split face", support[e]); 16224c367dbcSMatthew G. Knepley supportNew[qf++] = face + pMaxNew[dep + 2] + numSplitPoints[dep + 2]; 16234c367dbcSMatthew G. Knepley } 16244c367dbcSMatthew G. Knepley } 16259566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupport(sdm, hybface, supportNew)); 1626cd0c2139SMatthew G Knepley } 1627cd0c2139SMatthew G Knepley } 1628cd0c2139SMatthew G Knepley } 162918c5995bSMatthew G. Knepley for (dep = 0; dep <= depth; ++dep) { 163018c5995bSMatthew G. Knepley for (p = 0; p < numUnsplitPoints[dep]; ++p) { 163118c5995bSMatthew G. Knepley const PetscInt oldp = unsplitPoints[dep][p]; 16322582d50cSToby Isaac const PetscInt newp = DMPlexShiftPoint_Internal(oldp, depth, depthShift) /*oldp + depthOffset[dep]*/; 1633b5a892a1SMatthew G. Knepley const PetscInt *cone, *support; 1634e1757548SMatthew G. Knepley PetscInt coneSize, supportSize, supportSizeNew, q, qf, e, f, s; 163518c5995bSMatthew G. Knepley 16369566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, oldp, &coneSize)); 16379566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, oldp, &cone)); 16389566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dm, oldp, &supportSize)); 16399566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(dm, oldp, &support)); 164018c5995bSMatthew G. Knepley if (dep == 0) { 164118c5995bSMatthew G. Knepley const PetscInt hybedge = p + pMaxNew[dep + 1] + numSplitPoints[dep + 1] + numSplitPoints[dep]; 164218c5995bSMatthew G. Knepley 164318c5995bSMatthew G. Knepley /* Unsplit vertex */ 16449566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(sdm, newp, &supportSizeNew)); 164518c5995bSMatthew G. Knepley for (s = 0, q = 0; s < supportSize; ++s) { 16462582d50cSToby Isaac supportNew[q++] = DMPlexShiftPoint_Internal(support[s], depth, depthShift) /*support[s] + depthOffset[dep+1]*/; 16479566063dSJacob Faibussowitsch PetscCall(PetscFindInt(support[s], numSplitPoints[dep + 1], splitPoints[dep + 1], &e)); 1648ad540459SPierre Jolivet if (e >= 0) supportNew[q++] = e + pMaxNew[dep + 1]; 164918c5995bSMatthew G. Knepley } 165018c5995bSMatthew G. Knepley supportNew[q++] = hybedge; 165118c5995bSMatthew G. Knepley supportNew[q++] = hybedge; 165263a3b9bcSJacob Faibussowitsch PetscCheck(q == supportSizeNew, comm, PETSC_ERR_ARG_WRONG, "Support size %" PetscInt_FMT " != %" PetscInt_FMT " for vertex %" PetscInt_FMT, q, supportSizeNew, newp); 16539566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupport(sdm, newp, supportNew)); 165418c5995bSMatthew G. Knepley /* Hybrid edge */ 165518c5995bSMatthew G. Knepley coneNew[0] = newp; 165618c5995bSMatthew G. Knepley coneNew[1] = newp; 16579566063dSJacob Faibussowitsch PetscCall(DMPlexSetCone(sdm, hybedge, coneNew)); 165818c5995bSMatthew G. Knepley for (e = 0, qf = 0; e < supportSize; ++e) { 165918c5995bSMatthew G. Knepley PetscInt val, edge; 166018c5995bSMatthew G. Knepley 16619566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, support[e], &val)); 166218c5995bSMatthew G. Knepley if (val == 1) { 16639566063dSJacob Faibussowitsch PetscCall(PetscFindInt(support[e], numSplitPoints[dep + 1], splitPoints[dep + 1], &edge)); 166463a3b9bcSJacob Faibussowitsch PetscCheck(edge >= 0, comm, PETSC_ERR_ARG_WRONG, "Edge %" PetscInt_FMT " is not a split edge", support[e]); 166518c5995bSMatthew G. Knepley supportNew[qf++] = edge + pMaxNew[dep + 2] + numSplitPoints[dep + 2]; 1666e1757548SMatthew G. Knepley } else if (val == (shift2 + 1)) { 16679566063dSJacob Faibussowitsch PetscCall(PetscFindInt(support[e], numUnsplitPoints[dep + 1], unsplitPoints[dep + 1], &edge)); 166863a3b9bcSJacob Faibussowitsch PetscCheck(edge >= 0, comm, PETSC_ERR_ARG_WRONG, "Edge %" PetscInt_FMT " is not a unsplit edge", support[e]); 1669e1757548SMatthew G. Knepley supportNew[qf++] = edge + pMaxNew[dep + 2] + numSplitPoints[dep + 2] + numSplitPoints[dep + 1]; 167018c5995bSMatthew G. Knepley } 167118c5995bSMatthew G. Knepley } 16729566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupport(sdm, hybedge, supportNew)); 1673e1757548SMatthew G. Knepley } else if (dep == dim - 2) { 1674e1757548SMatthew G. Knepley const PetscInt hybface = p + pMaxNew[dep + 1] + numSplitPoints[dep + 1] + numSplitPoints[dep]; 1675e1757548SMatthew G. Knepley 1676da1dd7e4SMatthew G. Knepley /* Unsplit edge: Faces into original edge, split face, and hybrid face twice */ 1677e1757548SMatthew G. Knepley for (f = 0, qf = 0; f < supportSize; ++f) { 1678e1757548SMatthew G. Knepley PetscInt val, face; 1679e1757548SMatthew G. Knepley 16809566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, support[f], &val)); 1681e1757548SMatthew G. Knepley if (val == dim - 1) { 16829566063dSJacob Faibussowitsch PetscCall(PetscFindInt(support[f], numSplitPoints[dep + 1], splitPoints[dep + 1], &face)); 168363a3b9bcSJacob Faibussowitsch PetscCheck(face >= 0, comm, PETSC_ERR_ARG_WRONG, "Face %" PetscInt_FMT " is not a split face", support[f]); 16842582d50cSToby Isaac supportNew[qf++] = DMPlexShiftPoint_Internal(support[f], depth, depthShift) /*support[f] + depthOffset[dep+1]*/; 1685e1757548SMatthew G. Knepley supportNew[qf++] = face + pMaxNew[dep + 1]; 1686e1757548SMatthew G. Knepley } else { 16872582d50cSToby Isaac supportNew[qf++] = DMPlexShiftPoint_Internal(support[f], depth, depthShift) /*support[f] + depthOffset[dep+1]*/; 1688e1757548SMatthew G. Knepley } 1689e1757548SMatthew G. Knepley } 1690e1757548SMatthew G. Knepley supportNew[qf++] = hybface; 1691e1757548SMatthew G. Knepley supportNew[qf++] = hybface; 16929566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(sdm, newp, &supportSizeNew)); 169363a3b9bcSJacob Faibussowitsch PetscCheck(qf == supportSizeNew, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Support size for unsplit edge %" PetscInt_FMT " is %" PetscInt_FMT " != %" PetscInt_FMT, newp, qf, supportSizeNew); 16949566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupport(sdm, newp, supportNew)); 1695e1757548SMatthew G. Knepley /* Add hybrid face */ 1696e1757548SMatthew G. Knepley coneNew[0] = newp; 1697212cc919SMatthew G. Knepley coneNew[1] = newp; 16989566063dSJacob Faibussowitsch PetscCall(PetscFindInt(cone[0], numUnsplitPoints[dep - 1], unsplitPoints[dep - 1], &v)); 169963a3b9bcSJacob Faibussowitsch PetscCheck(v >= 0, comm, PETSC_ERR_ARG_WRONG, "Vertex %" PetscInt_FMT " is not an unsplit vertex", cone[0]); 1700212cc919SMatthew G. Knepley coneNew[2] = v + pMaxNew[dep] + numSplitPoints[dep] + numSplitPoints[dep - 1]; 17019566063dSJacob Faibussowitsch PetscCall(PetscFindInt(cone[1], numUnsplitPoints[dep - 1], unsplitPoints[dep - 1], &v)); 170263a3b9bcSJacob Faibussowitsch PetscCheck(v >= 0, comm, PETSC_ERR_ARG_WRONG, "Vertex %" PetscInt_FMT " is not an unsplit vertex", cone[1]); 1703e1757548SMatthew G. Knepley coneNew[3] = v + pMaxNew[dep] + numSplitPoints[dep] + numSplitPoints[dep - 1]; 17049566063dSJacob Faibussowitsch PetscCall(DMPlexSetCone(sdm, hybface, coneNew)); 1705da1dd7e4SMatthew G. Knepley for (f = 0, qf = 0; f < supportSize; ++f) { 1706da1dd7e4SMatthew G. Knepley PetscInt val, face; 1707da1dd7e4SMatthew G. Knepley 17089566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, support[f], &val)); 1709da1dd7e4SMatthew G. Knepley if (val == dim - 1) { 17109566063dSJacob Faibussowitsch PetscCall(PetscFindInt(support[f], numSplitPoints[dep + 1], splitPoints[dep + 1], &face)); 1711da1dd7e4SMatthew G. Knepley supportNew[qf++] = face + pMaxNew[dep + 2] + numSplitPoints[dep + 2]; 1712da1dd7e4SMatthew G. Knepley } 1713da1dd7e4SMatthew G. Knepley } 17149566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(sdm, hybface, &supportSizeNew)); 171563a3b9bcSJacob Faibussowitsch PetscCheck(qf == supportSizeNew, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Support size for hybrid face %" PetscInt_FMT " is %" PetscInt_FMT " != %" PetscInt_FMT, hybface, qf, supportSizeNew); 17169566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupport(sdm, hybface, supportNew)); 1717cd0c2139SMatthew G Knepley } 1718cd0c2139SMatthew G Knepley } 1719cd0c2139SMatthew G Knepley } 1720cd0c2139SMatthew G Knepley /* Step 6b: Replace split points in negative side cones */ 1721cd0c2139SMatthew G Knepley for (sp = 0; sp < numSP; ++sp) { 1722cd0c2139SMatthew G Knepley PetscInt dep = values[sp]; 1723cd0c2139SMatthew G Knepley IS pIS; 1724cd0c2139SMatthew G Knepley PetscInt numPoints; 1725cd0c2139SMatthew G Knepley const PetscInt *points; 1726cd0c2139SMatthew G Knepley 1727cd0c2139SMatthew G Knepley if (dep >= 0) continue; 17289566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(label, dep, &pIS)); 1729cd0c2139SMatthew G Knepley if (!pIS) continue; 1730cd0c2139SMatthew G Knepley dep = -dep - shift; 17319566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(pIS, &numPoints)); 17329566063dSJacob Faibussowitsch PetscCall(ISGetIndices(pIS, &points)); 1733cd0c2139SMatthew G Knepley for (p = 0; p < numPoints; ++p) { 1734cd0c2139SMatthew G Knepley const PetscInt oldp = points[p]; 17352582d50cSToby Isaac const PetscInt newp = DMPlexShiftPoint_Internal(oldp, depth, depthShift) /*depthOffset[dep] + oldp*/; 1736cd0c2139SMatthew G Knepley const PetscInt *cone; 1737cd0c2139SMatthew G Knepley PetscInt coneSize, c; 173850cf782dSMatthew G. Knepley /* PetscBool replaced = PETSC_FALSE; */ 1739cd0c2139SMatthew G Knepley 1740cd0c2139SMatthew G Knepley /* Negative edge: replace split vertex */ 1741cd0c2139SMatthew G Knepley /* Negative cell: replace split face */ 17429566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(sdm, newp, &coneSize)); 17439566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(sdm, newp, &cone)); 1744cd0c2139SMatthew G Knepley for (c = 0; c < coneSize; ++c) { 1745e38fbfedSToby Isaac const PetscInt coldp = DMPlexShiftPointInverse_Internal(cone[c], depth, depthShift); 1746cd0c2139SMatthew G Knepley PetscInt csplitp, cp, val; 1747cd0c2139SMatthew G Knepley 17489566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, coldp, &val)); 1749cd0c2139SMatthew G Knepley if (val == dep - 1) { 17509566063dSJacob Faibussowitsch PetscCall(PetscFindInt(coldp, numSplitPoints[dep - 1], splitPoints[dep - 1], &cp)); 175163a3b9bcSJacob Faibussowitsch PetscCheck(cp >= 0, comm, PETSC_ERR_ARG_WRONG, "Point %" PetscInt_FMT " is not a split point of dimension %" PetscInt_FMT, oldp, dep - 1); 1752cd0c2139SMatthew G Knepley csplitp = pMaxNew[dep - 1] + cp; 17539566063dSJacob Faibussowitsch PetscCall(DMPlexInsertCone(sdm, newp, c, csplitp)); 175450cf782dSMatthew G. Knepley /* replaced = PETSC_TRUE; */ 1755cd0c2139SMatthew G Knepley } 1756cd0c2139SMatthew G Knepley } 17574a189a86SMatthew G. Knepley /* Cells with only a vertex or edge on the submesh have no replacement */ 175828b400f6SJacob Faibussowitsch /* PetscCheck(replaced,comm, PETSC_ERR_ARG_WRONG, "The cone of point %d does not contain split points", oldp); */ 1759cd0c2139SMatthew G Knepley } 17609566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(pIS, &points)); 17619566063dSJacob Faibussowitsch PetscCall(ISDestroy(&pIS)); 1762cd0c2139SMatthew G Knepley } 1763fa8e8ae5SToby Isaac /* Step 7: Coordinates */ 17649566063dSJacob Faibussowitsch PetscCall(DMPlexShiftCoordinates_Internal(dm, depthShift, sdm)); 17659566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateSection(sdm, &coordSection)); 17669566063dSJacob Faibussowitsch PetscCall(DMGetCoordinatesLocal(sdm, &coordinates)); 17679566063dSJacob Faibussowitsch PetscCall(VecGetArray(coordinates, &coords)); 1768cd0c2139SMatthew G Knepley for (v = 0; v < (numSplitPoints ? numSplitPoints[0] : 0); ++v) { 17692582d50cSToby Isaac const PetscInt newp = DMPlexShiftPoint_Internal(splitPoints[0][v], depth, depthShift) /*depthOffset[0] + splitPoints[0][v]*/; 1770cd0c2139SMatthew G Knepley const PetscInt splitp = pMaxNew[0] + v; 1771cd0c2139SMatthew G Knepley PetscInt dof, off, soff, d; 1772cd0c2139SMatthew G Knepley 17739566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(coordSection, newp, &dof)); 17749566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(coordSection, newp, &off)); 17759566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(coordSection, splitp, &soff)); 1776cd0c2139SMatthew G Knepley for (d = 0; d < dof; ++d) coords[soff + d] = coords[off + d]; 1777cd0c2139SMatthew G Knepley } 17789566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(coordinates, &coords)); 1779fa8e8ae5SToby Isaac /* Step 8: SF, if I can figure this out we can split the mesh in parallel */ 17809566063dSJacob Faibussowitsch PetscCall(DMPlexShiftSF_Internal(dm, depthShift, sdm)); 1781b6dfa339SMatthew G. Knepley /* TODO We need to associate the ghost points with the correct replica */ 1782fa8e8ae5SToby Isaac /* Step 9: Labels */ 17839566063dSJacob Faibussowitsch PetscCall(DMPlexShiftLabels_Internal(dm, depthShift, sdm)); 17849566063dSJacob Faibussowitsch PetscCall(DMPlexCreateVTKLabel_Internal(dm, PETSC_FALSE, sdm)); 17859566063dSJacob Faibussowitsch PetscCall(DMGetNumLabels(sdm, &numLabels)); 1786cd0c2139SMatthew G Knepley for (dep = 0; dep <= depth; ++dep) { 1787cd0c2139SMatthew G Knepley for (p = 0; p < numSplitPoints[dep]; ++p) { 17882582d50cSToby Isaac const PetscInt newp = DMPlexShiftPoint_Internal(splitPoints[dep][p], depth, depthShift) /*depthOffset[dep] + splitPoints[dep][p]*/; 1789cd0c2139SMatthew G Knepley const PetscInt splitp = pMaxNew[dep] + p; 1790cd0c2139SMatthew G Knepley PetscInt l; 1791cd0c2139SMatthew G Knepley 17927db7e0a7SMatthew G. Knepley if (splitLabel) { 17937db7e0a7SMatthew G. Knepley const PetscInt val = 100 + dep; 17947db7e0a7SMatthew G. Knepley 17959566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(splitLabel, newp, val)); 17969566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(splitLabel, splitp, -val)); 17977db7e0a7SMatthew G. Knepley } 1798cd0c2139SMatthew G Knepley for (l = 0; l < numLabels; ++l) { 1799cd0c2139SMatthew G Knepley DMLabel mlabel; 1800cd0c2139SMatthew G Knepley const char *lname; 1801cd0c2139SMatthew G Knepley PetscInt val; 18029a356370SMatthew G. Knepley PetscBool isDepth; 1803cd0c2139SMatthew G Knepley 18049566063dSJacob Faibussowitsch PetscCall(DMGetLabelName(sdm, l, &lname)); 18059566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(lname, "depth", &isDepth)); 18069a356370SMatthew G. Knepley if (isDepth) continue; 18079566063dSJacob Faibussowitsch PetscCall(DMGetLabel(sdm, lname, &mlabel)); 18089566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(mlabel, newp, &val)); 180948a46eb9SPierre Jolivet if (val >= 0) PetscCall(DMLabelSetValue(mlabel, splitp, val)); 1810cd0c2139SMatthew G Knepley } 1811cd0c2139SMatthew G Knepley } 1812cd0c2139SMatthew G Knepley } 1813cd0c2139SMatthew G Knepley for (sp = 0; sp < numSP; ++sp) { 1814cd0c2139SMatthew G Knepley const PetscInt dep = values[sp]; 1815cd0c2139SMatthew G Knepley 1816cd0c2139SMatthew G Knepley if ((dep < 0) || (dep > depth)) continue; 18179566063dSJacob Faibussowitsch if (splitIS[dep]) PetscCall(ISRestoreIndices(splitIS[dep], &splitPoints[dep])); 18189566063dSJacob Faibussowitsch PetscCall(ISDestroy(&splitIS[dep])); 18199566063dSJacob Faibussowitsch if (unsplitIS[dep]) PetscCall(ISRestoreIndices(unsplitIS[dep], &unsplitPoints[dep])); 18209566063dSJacob Faibussowitsch PetscCall(ISDestroy(&unsplitIS[dep])); 1821cd0c2139SMatthew G Knepley } 1822b6dfa339SMatthew G. Knepley if (ghostIS) PetscCall(ISRestoreIndices(ghostIS, &ghostPoints)); 1823b6dfa339SMatthew G. Knepley PetscCall(ISDestroy(&ghostIS)); 1824cd0c2139SMatthew G Knepley if (label) { 18259566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(valueIS, &values)); 18269566063dSJacob Faibussowitsch PetscCall(ISDestroy(&valueIS)); 1827cd0c2139SMatthew G Knepley } 18280d4d4d06SMatthew G. Knepley for (d = 0; d <= depth; ++d) { 18299566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthStratum(sdm, d, NULL, &pEnd)); 183036dbac82SMatthew G. Knepley pMaxNew[d] = pEnd - numHybridPoints[d] - numHybridPointsOld[d]; 18310d4d4d06SMatthew G. Knepley } 18329566063dSJacob Faibussowitsch PetscCall(PetscFree3(coneNew, coneONew, supportNew)); 18339566063dSJacob Faibussowitsch PetscCall(PetscFree5(depthMax, depthEnd, depthShift, pMaxNew, numHybridPointsOld)); 18349566063dSJacob Faibussowitsch PetscCall(PetscFree7(splitIS, unsplitIS, numSplitPoints, numUnsplitPoints, numHybridPoints, splitPoints, unsplitPoints)); 1835cd0c2139SMatthew G Knepley PetscFunctionReturn(0); 1836cd0c2139SMatthew G Knepley } 1837cd0c2139SMatthew G Knepley 1838cd0c2139SMatthew G Knepley /*@C 1839cd0c2139SMatthew G Knepley DMPlexConstructCohesiveCells - Construct cohesive cells which split the face along an internal interface 1840cd0c2139SMatthew G Knepley 1841cd0c2139SMatthew G Knepley Collective on dm 1842cd0c2139SMatthew G Knepley 1843cd0c2139SMatthew G Knepley Input Parameters: 1844cd0c2139SMatthew G Knepley + dm - The original DM 184553156dfcSMatthew G. Knepley - label - The label specifying the boundary faces (this could be auto-generated) 1846cd0c2139SMatthew G Knepley 1847cd0c2139SMatthew G Knepley Output Parameters: 18487db7e0a7SMatthew G. Knepley + splitLabel - The label containing the split points, or NULL if no output is desired 1849cd0c2139SMatthew G Knepley - dmSplit - The new DM 1850cd0c2139SMatthew G Knepley 1851cd0c2139SMatthew G Knepley Level: developer 1852cd0c2139SMatthew G Knepley 1853db781477SPatrick Sanan .seealso: `DMCreate()`, `DMPlexLabelCohesiveComplete()` 1854cd0c2139SMatthew G Knepley @*/ 1855d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexConstructCohesiveCells(DM dm, DMLabel label, DMLabel splitLabel, DM *dmSplit) 1856d71ae5a4SJacob Faibussowitsch { 1857cd0c2139SMatthew G Knepley DM sdm; 1858cd0c2139SMatthew G Knepley PetscInt dim; 1859cd0c2139SMatthew G Knepley 1860cd0c2139SMatthew G Knepley PetscFunctionBegin; 1861cd0c2139SMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 1862064a246eSJacob Faibussowitsch PetscValidPointer(dmSplit, 4); 18639566063dSJacob Faibussowitsch PetscCall(DMCreate(PetscObjectComm((PetscObject)dm), &sdm)); 18649566063dSJacob Faibussowitsch PetscCall(DMSetType(sdm, DMPLEX)); 18659566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 18669566063dSJacob Faibussowitsch PetscCall(DMSetDimension(sdm, dim)); 1867cd0c2139SMatthew G Knepley switch (dim) { 1868cd0c2139SMatthew G Knepley case 2: 1869d71ae5a4SJacob Faibussowitsch case 3: 1870d71ae5a4SJacob Faibussowitsch PetscCall(DMPlexConstructCohesiveCells_Internal(dm, label, splitLabel, sdm)); 1871d71ae5a4SJacob Faibussowitsch break; 1872d71ae5a4SJacob Faibussowitsch default: 1873d71ae5a4SJacob Faibussowitsch SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Cannot construct cohesive cells for dimension %" PetscInt_FMT, dim); 1874cd0c2139SMatthew G Knepley } 1875cd0c2139SMatthew G Knepley *dmSplit = sdm; 1876cd0c2139SMatthew G Knepley PetscFunctionReturn(0); 1877cd0c2139SMatthew G Knepley } 1878cd0c2139SMatthew G Knepley 18790f66a230SMatthew G. Knepley /* Returns the side of the surface for a given cell with a face on the surface */ 1880d71ae5a4SJacob Faibussowitsch static PetscErrorCode GetSurfaceSide_Static(DM dm, DM subdm, PetscInt numSubpoints, const PetscInt *subpoints, PetscInt cell, PetscInt face, PetscBool *pos) 1881d71ae5a4SJacob Faibussowitsch { 18820f66a230SMatthew G. Knepley const PetscInt *cone, *ornt; 18830f66a230SMatthew G. Knepley PetscInt dim, coneSize, c; 18840f66a230SMatthew G. Knepley 18850f66a230SMatthew G. Knepley PetscFunctionBegin; 18860f66a230SMatthew G. Knepley *pos = PETSC_TRUE; 18879566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 18889566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, cell, &coneSize)); 18899566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, cell, &cone)); 18909566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeOrientation(dm, cell, &ornt)); 18910f66a230SMatthew G. Knepley for (c = 0; c < coneSize; ++c) { 18920f66a230SMatthew G. Knepley if (cone[c] == face) { 18930f66a230SMatthew G. Knepley PetscInt o = ornt[c]; 18940f66a230SMatthew G. Knepley 18950f66a230SMatthew G. Knepley if (subdm) { 18960f66a230SMatthew G. Knepley const PetscInt *subcone, *subornt; 18970f66a230SMatthew G. Knepley PetscInt subpoint, subface, subconeSize, sc; 18980f66a230SMatthew G. Knepley 18999566063dSJacob Faibussowitsch PetscCall(PetscFindInt(cell, numSubpoints, subpoints, &subpoint)); 19009566063dSJacob Faibussowitsch PetscCall(PetscFindInt(face, numSubpoints, subpoints, &subface)); 19019566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(subdm, subpoint, &subconeSize)); 19029566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(subdm, subpoint, &subcone)); 19039566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeOrientation(subdm, subpoint, &subornt)); 19040f66a230SMatthew G. Knepley for (sc = 0; sc < subconeSize; ++sc) { 19050f66a230SMatthew G. Knepley if (subcone[sc] == subface) { 19060f66a230SMatthew G. Knepley o = subornt[0]; 19070f66a230SMatthew G. Knepley break; 19080f66a230SMatthew G. Knepley } 19090f66a230SMatthew G. Knepley } 191063a3b9bcSJacob Faibussowitsch PetscCheck(sc < subconeSize, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Could not find subpoint %" PetscInt_FMT " (%" PetscInt_FMT ") in cone for subpoint %" PetscInt_FMT " (%" PetscInt_FMT ")", subface, face, subpoint, cell); 19110f66a230SMatthew G. Knepley } 19120f66a230SMatthew G. Knepley if (o >= 0) *pos = PETSC_TRUE; 19130f66a230SMatthew G. Knepley else *pos = PETSC_FALSE; 19140f66a230SMatthew G. Knepley break; 19150f66a230SMatthew G. Knepley } 19160f66a230SMatthew G. Knepley } 191763a3b9bcSJacob Faibussowitsch PetscCheck(c != coneSize, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Cell %" PetscInt_FMT " in split face %" PetscInt_FMT " support does not have it in the cone", cell, face); 19180f66a230SMatthew G. Knepley PetscFunctionReturn(0); 19190f66a230SMatthew G. Knepley } 19200f66a230SMatthew G. Knepley 1921d71ae5a4SJacob Faibussowitsch static PetscErrorCode CheckFaultEdge_Private(DM dm, DMLabel label) 1922d71ae5a4SJacob Faibussowitsch { 1923accc9626SMatthew G. Knepley IS facePosIS, faceNegIS, dimIS; 1924accc9626SMatthew G. Knepley const PetscInt *points; 1925accc9626SMatthew G. Knepley PetscInt dim, numPoints, p, shift = 100, shift2 = 200; 1926accc9626SMatthew G. Knepley 1927accc9626SMatthew G. Knepley PetscFunctionBegin; 1928accc9626SMatthew G. Knepley PetscCall(DMGetDimension(dm, &dim)); 1929accc9626SMatthew G. Knepley /* If any faces touching the fault divide cells on either side, split them */ 1930accc9626SMatthew G. Knepley PetscCall(DMLabelGetStratumIS(label, shift + dim - 1, &facePosIS)); 1931accc9626SMatthew G. Knepley PetscCall(DMLabelGetStratumIS(label, -(shift + dim - 1), &faceNegIS)); 1932accc9626SMatthew G. Knepley if (!facePosIS || !faceNegIS) { 1933accc9626SMatthew G. Knepley PetscCall(ISDestroy(&facePosIS)); 1934accc9626SMatthew G. Knepley PetscCall(ISDestroy(&faceNegIS)); 1935accc9626SMatthew G. Knepley PetscFunctionReturn(0); 1936accc9626SMatthew G. Knepley } 1937accc9626SMatthew G. Knepley PetscCall(ISExpand(facePosIS, faceNegIS, &dimIS)); 1938accc9626SMatthew G. Knepley PetscCall(ISDestroy(&facePosIS)); 1939accc9626SMatthew G. Knepley PetscCall(ISDestroy(&faceNegIS)); 1940accc9626SMatthew G. Knepley PetscCall(ISGetLocalSize(dimIS, &numPoints)); 1941accc9626SMatthew G. Knepley PetscCall(ISGetIndices(dimIS, &points)); 1942accc9626SMatthew G. Knepley for (p = 0; p < numPoints; ++p) { 1943accc9626SMatthew G. Knepley const PetscInt point = points[p]; 1944accc9626SMatthew G. Knepley const PetscInt *support; 1945accc9626SMatthew G. Knepley PetscInt supportSize, valA, valB; 1946accc9626SMatthew G. Knepley 1947accc9626SMatthew G. Knepley PetscCall(DMPlexGetSupportSize(dm, point, &supportSize)); 1948accc9626SMatthew G. Knepley if (supportSize != 2) continue; 1949accc9626SMatthew G. Knepley PetscCall(DMPlexGetSupport(dm, point, &support)); 1950accc9626SMatthew G. Knepley PetscCall(DMLabelGetValue(label, support[0], &valA)); 1951accc9626SMatthew G. Knepley PetscCall(DMLabelGetValue(label, support[1], &valB)); 1952accc9626SMatthew G. Knepley if ((valA == -1) || (valB == -1)) continue; 1953accc9626SMatthew G. Knepley if (valA * valB > 0) continue; 1954e1a13daeSMatthew G. Knepley /* Check that this face is not incident on only unsplit faces, meaning has at least one split face */ 1955e1a13daeSMatthew G. Knepley { 1956e1a13daeSMatthew G. Knepley PetscInt *closure = NULL; 1957e1a13daeSMatthew G. Knepley PetscBool split = PETSC_FALSE; 1958e1a13daeSMatthew G. Knepley PetscInt closureSize, cl; 1959e1a13daeSMatthew G. Knepley 1960e1a13daeSMatthew G. Knepley PetscCall(DMPlexGetTransitiveClosure(dm, point, PETSC_TRUE, &closureSize, &closure)); 1961e1a13daeSMatthew G. Knepley for (cl = 0; cl < closureSize * 2; cl += 2) { 1962e1a13daeSMatthew G. Knepley PetscCall(DMLabelGetValue(label, closure[cl], &valA)); 19639371c9d4SSatish Balay if ((valA >= 0) && (valA <= dim)) { 19649371c9d4SSatish Balay split = PETSC_TRUE; 19659371c9d4SSatish Balay break; 19669371c9d4SSatish Balay } 1967e1a13daeSMatthew G. Knepley } 1968e1a13daeSMatthew G. Knepley PetscCall(DMPlexRestoreTransitiveClosure(dm, point, PETSC_TRUE, &closureSize, &closure)); 1969e1a13daeSMatthew G. Knepley if (!split) continue; 1970e1a13daeSMatthew G. Knepley } 1971accc9626SMatthew G. Knepley /* Split the face */ 1972accc9626SMatthew G. Knepley PetscCall(DMLabelGetValue(label, point, &valA)); 1973accc9626SMatthew G. Knepley PetscCall(DMLabelClearValue(label, point, valA)); 1974accc9626SMatthew G. Knepley PetscCall(DMLabelSetValue(label, point, dim - 1)); 1975accc9626SMatthew G. Knepley /* Label its closure: 1976accc9626SMatthew G. Knepley unmarked: label as unsplit 1977accc9626SMatthew G. Knepley incident: relabel as split 1978accc9626SMatthew G. Knepley split: do nothing 1979accc9626SMatthew G. Knepley */ 1980accc9626SMatthew G. Knepley { 1981accc9626SMatthew G. Knepley PetscInt *closure = NULL; 1982accc9626SMatthew G. Knepley PetscInt closureSize, cl, dep; 1983accc9626SMatthew G. Knepley 1984accc9626SMatthew G. Knepley PetscCall(DMPlexGetTransitiveClosure(dm, point, PETSC_TRUE, &closureSize, &closure)); 1985accc9626SMatthew G. Knepley for (cl = 0; cl < closureSize * 2; cl += 2) { 1986accc9626SMatthew G. Knepley PetscCall(DMLabelGetValue(label, closure[cl], &valA)); 1987accc9626SMatthew G. Knepley if (valA == -1) { /* Mark as unsplit */ 1988accc9626SMatthew G. Knepley PetscCall(DMPlexGetPointDepth(dm, closure[cl], &dep)); 1989accc9626SMatthew G. Knepley PetscCall(DMLabelSetValue(label, closure[cl], shift2 + dep)); 1990accc9626SMatthew G. Knepley } else if (((valA >= shift) && (valA < shift2)) || ((valA <= -shift) && (valA > -shift2))) { 1991accc9626SMatthew G. Knepley PetscCall(DMPlexGetPointDepth(dm, closure[cl], &dep)); 1992accc9626SMatthew G. Knepley PetscCall(DMLabelClearValue(label, closure[cl], valA)); 1993accc9626SMatthew G. Knepley PetscCall(DMLabelSetValue(label, closure[cl], dep)); 1994accc9626SMatthew G. Knepley } 1995accc9626SMatthew G. Knepley } 1996accc9626SMatthew G. Knepley PetscCall(DMPlexRestoreTransitiveClosure(dm, point, PETSC_TRUE, &closureSize, &closure)); 1997accc9626SMatthew G. Knepley } 1998accc9626SMatthew G. Knepley } 1999accc9626SMatthew G. Knepley PetscCall(ISRestoreIndices(dimIS, &points)); 2000accc9626SMatthew G. Knepley PetscCall(ISDestroy(&dimIS)); 2001accc9626SMatthew G. Knepley PetscFunctionReturn(0); 2002accc9626SMatthew G. Knepley } 2003accc9626SMatthew G. Knepley 2004cd0c2139SMatthew G Knepley /*@ 20050f66a230SMatthew G. Knepley DMPlexLabelCohesiveComplete - Starting with a label marking points on an internal surface, we add all other mesh pieces 2006cd0c2139SMatthew G Knepley to complete the surface 2007cd0c2139SMatthew G Knepley 2008cd0c2139SMatthew G Knepley Input Parameters: 2009cd0c2139SMatthew G Knepley + dm - The DM 20100f66a230SMatthew G. Knepley . label - A DMLabel marking the surface 20110f66a230SMatthew G. Knepley . blabel - A DMLabel marking the vertices on the boundary which will not be duplicated, or NULL to find them automatically 2012caf9e14dSMatthew G. Knepley . bvalue - Value of DMLabel marking the vertices on the boundary 2013bb55d314SMatthew G. Knepley . flip - Flag to flip the submesh normal and replace points on the other side 201447946fd8SMatthew G. Knepley - subdm - The subDM associated with the label, or NULL 2015cd0c2139SMatthew G Knepley 2016cd0c2139SMatthew G Knepley Output Parameter: 2017cd0c2139SMatthew G Knepley . label - A DMLabel marking all surface points 2018cd0c2139SMatthew G Knepley 20190f66a230SMatthew G. Knepley Note: The vertices in blabel are called "unsplit" in the terminology from hybrid cell creation. 20200f66a230SMatthew G. Knepley 2021cd0c2139SMatthew G Knepley Level: developer 2022cd0c2139SMatthew G Knepley 2023db781477SPatrick Sanan .seealso: `DMPlexConstructCohesiveCells()`, `DMPlexLabelComplete()` 2024cd0c2139SMatthew G Knepley @*/ 2025d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexLabelCohesiveComplete(DM dm, DMLabel label, DMLabel blabel, PetscInt bvalue, PetscBool flip, DM subdm) 2026d71ae5a4SJacob Faibussowitsch { 2027d90583fdSMatthew G. Knepley DMLabel depthLabel; 2028accc9626SMatthew G. Knepley IS dimIS, subpointIS = NULL; 202947946fd8SMatthew G. Knepley const PetscInt *points, *subpoints; 2030bb55d314SMatthew G. Knepley const PetscInt rev = flip ? -1 : 1; 2031accc9626SMatthew G. Knepley PetscInt shift = 100, shift2 = 200, shift3 = 300, dim, depth, numPoints, numSubpoints, p, val; 2032cd0c2139SMatthew G Knepley 2033cd0c2139SMatthew G Knepley PetscFunctionBegin; 20349566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepth(dm, &depth)); 20359566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 20369566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthLabel(dm, &depthLabel)); 203747946fd8SMatthew G. Knepley if (subdm) { 20389566063dSJacob Faibussowitsch PetscCall(DMPlexGetSubpointIS(subdm, &subpointIS)); 203947946fd8SMatthew G. Knepley if (subpointIS) { 20409566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(subpointIS, &numSubpoints)); 20419566063dSJacob Faibussowitsch PetscCall(ISGetIndices(subpointIS, &subpoints)); 204247946fd8SMatthew G. Knepley } 204347946fd8SMatthew G. Knepley } 2044d7c8f101SMatthew G. Knepley /* Mark cell on the fault, and its faces which touch the fault: cell orientation for face gives the side of the fault */ 20459566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(label, dim - 1, &dimIS)); 2046accc9626SMatthew G. Knepley if (!dimIS) goto divide; 20479566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(dimIS, &numPoints)); 20489566063dSJacob Faibussowitsch PetscCall(ISGetIndices(dimIS, &points)); 2049d7c8f101SMatthew G. Knepley for (p = 0; p < numPoints; ++p) { /* Loop over fault faces */ 2050cd0c2139SMatthew G Knepley const PetscInt *support; 2051cd0c2139SMatthew G Knepley PetscInt supportSize, s; 2052cd0c2139SMatthew G Knepley 20539566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dm, points[p], &supportSize)); 2054c4419245SMatthew G. Knepley #if 0 2055c4419245SMatthew G. Knepley if (supportSize != 2) { 2056c4419245SMatthew G. Knepley const PetscInt *lp; 2057c4419245SMatthew G. Knepley PetscInt Nlp, pind; 2058c4419245SMatthew G. Knepley 2059c4419245SMatthew G. Knepley /* Check that for a cell with a single support face, that face is in the SF */ 2060c4419245SMatthew G. Knepley /* THis check only works for the remote side. We would need root side information */ 20619566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(dm->sf, NULL, &Nlp, &lp, NULL)); 20629566063dSJacob Faibussowitsch PetscCall(PetscFindInt(points[p], Nlp, lp, &pind)); 206363a3b9bcSJacob Faibussowitsch PetscCheck(pind >= 0,PetscObjectComm((PetscObject) dm), PETSC_ERR_ARG_WRONG, "Split face %" PetscInt_FMT " has %" PetscInt_FMT " != 2 supports, and the face is not shared with another process", points[p], supportSize); 2064c4419245SMatthew G. Knepley } 2065c4419245SMatthew G. Knepley #endif 20669566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(dm, points[p], &support)); 2067cd0c2139SMatthew G Knepley for (s = 0; s < supportSize; ++s) { 20680f66a230SMatthew G. Knepley const PetscInt *cone; 2069cd0c2139SMatthew G Knepley PetscInt coneSize, c; 20700f66a230SMatthew G. Knepley PetscBool pos; 2071cd0c2139SMatthew G Knepley 20729566063dSJacob Faibussowitsch PetscCall(GetSurfaceSide_Static(dm, subdm, numSubpoints, subpoints, support[s], points[p], &pos)); 20739566063dSJacob Faibussowitsch if (pos) PetscCall(DMLabelSetValue(label, support[s], rev * (shift + dim))); 20749566063dSJacob Faibussowitsch else PetscCall(DMLabelSetValue(label, support[s], -rev * (shift + dim))); 20750f66a230SMatthew G. Knepley if (rev < 0) pos = !pos ? PETSC_TRUE : PETSC_FALSE; 20760f66a230SMatthew G. Knepley /* Put faces touching the fault in the label */ 20779566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, support[s], &coneSize)); 20789566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, support[s], &cone)); 2079cd0c2139SMatthew G Knepley for (c = 0; c < coneSize; ++c) { 2080cd0c2139SMatthew G Knepley const PetscInt point = cone[c]; 2081cd0c2139SMatthew G Knepley 20829566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, point, &val)); 2083cd0c2139SMatthew G Knepley if (val == -1) { 2084cd0c2139SMatthew G Knepley PetscInt *closure = NULL; 2085cd0c2139SMatthew G Knepley PetscInt closureSize, cl; 2086cd0c2139SMatthew G Knepley 20879566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(dm, point, PETSC_TRUE, &closureSize, &closure)); 2088cd0c2139SMatthew G Knepley for (cl = 0; cl < closureSize * 2; cl += 2) { 2089cd0c2139SMatthew G Knepley const PetscInt clp = closure[cl]; 2090a0541d8aSMatthew G. Knepley PetscInt bval = -1; 2091cd0c2139SMatthew G Knepley 20929566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, clp, &val)); 20939566063dSJacob Faibussowitsch if (blabel) PetscCall(DMLabelGetValue(blabel, clp, &bval)); 2094a0541d8aSMatthew G. Knepley if ((val >= 0) && (val < dim - 1) && (bval < 0)) { 20959566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(label, point, pos == PETSC_TRUE ? shift + dim - 1 : -(shift + dim - 1))); 2096cd0c2139SMatthew G Knepley break; 2097cd0c2139SMatthew G Knepley } 2098cd0c2139SMatthew G Knepley } 20999566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dm, point, PETSC_TRUE, &closureSize, &closure)); 2100cd0c2139SMatthew G Knepley } 2101cd0c2139SMatthew G Knepley } 2102cd0c2139SMatthew G Knepley } 2103cd0c2139SMatthew G Knepley } 2104accc9626SMatthew G. Knepley PetscCall(ISRestoreIndices(dimIS, &points)); 2105accc9626SMatthew G. Knepley PetscCall(ISDestroy(&dimIS)); 2106a0541d8aSMatthew G. Knepley /* Mark boundary points as unsplit */ 210786200784SMatthew G. Knepley if (blabel) { 2108accc9626SMatthew G. Knepley IS bdIS; 2109accc9626SMatthew G. Knepley 2110caf9e14dSMatthew G. Knepley PetscCall(DMLabelGetStratumIS(blabel, bvalue, &bdIS)); 2111accc9626SMatthew G. Knepley PetscCall(ISGetLocalSize(bdIS, &numPoints)); 2112accc9626SMatthew G. Knepley PetscCall(ISGetIndices(bdIS, &points)); 2113a0541d8aSMatthew G. Knepley for (p = 0; p < numPoints; ++p) { 2114a0541d8aSMatthew G. Knepley const PetscInt point = points[p]; 2115a0541d8aSMatthew G. Knepley PetscInt val, bval; 2116a0541d8aSMatthew G. Knepley 21179566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(blabel, point, &bval)); 2118a0541d8aSMatthew G. Knepley if (bval >= 0) { 21199566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, point, &val)); 2120f7019248SMatthew G. Knepley if ((val < 0) || (val > dim)) { 2121f7019248SMatthew G. Knepley /* This could be a point added from splitting a vertex on an adjacent fault, otherwise its just wrong */ 21229566063dSJacob Faibussowitsch PetscCall(DMLabelClearValue(blabel, point, bval)); 2123f7019248SMatthew G. Knepley } 2124f7019248SMatthew G. Knepley } 2125f7019248SMatthew G. Knepley } 2126f7019248SMatthew G. Knepley for (p = 0; p < numPoints; ++p) { 2127f7019248SMatthew G. Knepley const PetscInt point = points[p]; 2128f7019248SMatthew G. Knepley PetscInt val, bval; 2129f7019248SMatthew G. Knepley 21309566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(blabel, point, &bval)); 2131f7019248SMatthew G. Knepley if (bval >= 0) { 213286200784SMatthew G. Knepley const PetscInt *cone, *support; 213386200784SMatthew G. Knepley PetscInt coneSize, supportSize, s, valA, valB, valE; 213486200784SMatthew G. Knepley 2135a0541d8aSMatthew G. Knepley /* Mark as unsplit */ 21369566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, point, &val)); 2137e1a13daeSMatthew G. Knepley PetscCheck(val >= 0 && val <= dim, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Point %" PetscInt_FMT " has label value %" PetscInt_FMT ", should be part of the fault", point, val); 21389566063dSJacob Faibussowitsch PetscCall(DMLabelClearValue(label, point, val)); 21399566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(label, point, shift2 + val)); 21402c06a818SMatthew G. Knepley /* Check for cross-edge 21412c06a818SMatthew G. Knepley A cross-edge has endpoints which are both on the boundary of the surface, but the edge itself is not. */ 214286200784SMatthew G. Knepley if (val != 0) continue; 21439566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(dm, point, &support)); 21449566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dm, point, &supportSize)); 214586200784SMatthew G. Knepley for (s = 0; s < supportSize; ++s) { 21469566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, support[s], &cone)); 21479566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, support[s], &coneSize)); 214863a3b9bcSJacob Faibussowitsch PetscCheck(coneSize == 2, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Edge %" PetscInt_FMT " has %" PetscInt_FMT " vertices != 2", support[s], coneSize); 21499566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(blabel, cone[0], &valA)); 21509566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(blabel, cone[1], &valB)); 21519566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(blabel, support[s], &valE)); 21529566063dSJacob Faibussowitsch if ((valE < 0) && (valA >= 0) && (valB >= 0) && (cone[0] != cone[1])) PetscCall(DMLabelSetValue(blabel, support[s], 2)); 215386200784SMatthew G. Knepley } 2154a0541d8aSMatthew G. Knepley } 2155a0541d8aSMatthew G. Knepley } 2156accc9626SMatthew G. Knepley PetscCall(ISRestoreIndices(bdIS, &points)); 2157accc9626SMatthew G. Knepley PetscCall(ISDestroy(&bdIS)); 2158a0541d8aSMatthew G. Knepley } 2159b6dfa339SMatthew G. Knepley /* Mark ghost fault cells */ 2160b6dfa339SMatthew G. Knepley { 2161b6dfa339SMatthew G. Knepley PetscSF sf; 2162b6dfa339SMatthew G. Knepley const PetscInt *leaves; 2163b6dfa339SMatthew G. Knepley PetscInt Nl, l; 2164b6dfa339SMatthew G. Knepley 2165b6dfa339SMatthew G. Knepley PetscCall(DMGetPointSF(dm, &sf)); 2166b6dfa339SMatthew G. Knepley PetscCall(PetscSFGetGraph(sf, NULL, &Nl, &leaves, NULL)); 2167accc9626SMatthew G. Knepley PetscCall(DMLabelGetStratumIS(label, dim - 1, &dimIS)); 2168accc9626SMatthew G. Knepley if (!dimIS) goto divide; 2169accc9626SMatthew G. Knepley PetscCall(ISGetLocalSize(dimIS, &numPoints)); 2170accc9626SMatthew G. Knepley PetscCall(ISGetIndices(dimIS, &points)); 2171b6dfa339SMatthew G. Knepley if (Nl > 0) { 2172b6dfa339SMatthew G. Knepley for (p = 0; p < numPoints; ++p) { 2173b6dfa339SMatthew G. Knepley const PetscInt point = points[p]; 2174b6dfa339SMatthew G. Knepley PetscInt val; 2175b6dfa339SMatthew G. Knepley 2176b6dfa339SMatthew G. Knepley PetscCall(PetscFindInt(point, Nl, leaves, &l)); 2177b6dfa339SMatthew G. Knepley if (l >= 0) { 2178b6dfa339SMatthew G. Knepley PetscInt *closure = NULL; 2179b6dfa339SMatthew G. Knepley PetscInt closureSize, cl; 2180b6dfa339SMatthew G. Knepley 2181b6dfa339SMatthew G. Knepley PetscCall(DMLabelGetValue(label, point, &val)); 2182b6dfa339SMatthew G. Knepley PetscCheck((val == dim - 1) || (val == shift2 + dim - 1), PETSC_COMM_SELF, PETSC_ERR_PLIB, "Point %" PetscInt_FMT " has label value %" PetscInt_FMT ", should be a fault face", point, val); 2183b6dfa339SMatthew G. Knepley PetscCall(DMLabelClearValue(label, point, val)); 2184b6dfa339SMatthew G. Knepley PetscCall(DMLabelSetValue(label, point, shift3 + val)); 2185b6dfa339SMatthew G. Knepley PetscCall(DMPlexGetTransitiveClosure(dm, point, PETSC_TRUE, &closureSize, &closure)); 2186accc9626SMatthew G. Knepley for (cl = 2; cl < closureSize * 2; cl += 2) { 2187b6dfa339SMatthew G. Knepley const PetscInt clp = closure[cl]; 2188b6dfa339SMatthew G. Knepley 2189b6dfa339SMatthew G. Knepley PetscCall(DMLabelGetValue(label, clp, &val)); 2190b6dfa339SMatthew G. Knepley PetscCheck(val != -1, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Point %" PetscInt_FMT " is missing from label, but is in the closure of a fault face", point); 2191b6dfa339SMatthew G. Knepley PetscCall(DMLabelClearValue(label, clp, val)); 2192b6dfa339SMatthew G. Knepley PetscCall(DMLabelSetValue(label, clp, shift3 + val)); 2193b6dfa339SMatthew G. Knepley } 2194b6dfa339SMatthew G. Knepley PetscCall(DMPlexRestoreTransitiveClosure(dm, point, PETSC_TRUE, &closureSize, &closure)); 2195b6dfa339SMatthew G. Knepley } 2196b6dfa339SMatthew G. Knepley } 2197b6dfa339SMatthew G. Knepley } 2198b6dfa339SMatthew G. Knepley PetscCall(ISRestoreIndices(dimIS, &points)); 2199b6dfa339SMatthew G. Knepley PetscCall(ISDestroy(&dimIS)); 2200accc9626SMatthew G. Knepley } 2201accc9626SMatthew G. Knepley divide: 2202b6dfa339SMatthew G. Knepley if (subpointIS) PetscCall(ISRestoreIndices(subpointIS, &subpoints)); 2203accc9626SMatthew G. Knepley PetscCall(DMPlexLabelFaultHalo(dm, label)); 2204accc9626SMatthew G. Knepley PetscCall(CheckFaultEdge_Private(dm, label)); 2205cd0c2139SMatthew G Knepley PetscFunctionReturn(0); 2206cd0c2139SMatthew G Knepley } 2207cd0c2139SMatthew G Knepley 2208720e594eSMatthew G. Knepley /* Check that no cell have all vertices on the fault */ 2209d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexCheckValidSubmesh_Private(DM dm, DMLabel label, DM subdm) 2210d71ae5a4SJacob Faibussowitsch { 2211720e594eSMatthew G. Knepley IS subpointIS; 2212720e594eSMatthew G. Knepley const PetscInt *dmpoints; 2213720e594eSMatthew G. Knepley PetscInt defaultValue, cStart, cEnd, c, vStart, vEnd; 2214720e594eSMatthew G. Knepley 2215720e594eSMatthew G. Knepley PetscFunctionBegin; 2216720e594eSMatthew G. Knepley if (!label) PetscFunctionReturn(0); 22179566063dSJacob Faibussowitsch PetscCall(DMLabelGetDefaultValue(label, &defaultValue)); 22189566063dSJacob Faibussowitsch PetscCall(DMPlexGetSubpointIS(subdm, &subpointIS)); 2219720e594eSMatthew G. Knepley if (!subpointIS) PetscFunctionReturn(0); 22209566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(subdm, 0, &cStart, &cEnd)); 22219566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthStratum(dm, 0, &vStart, &vEnd)); 22229566063dSJacob Faibussowitsch PetscCall(ISGetIndices(subpointIS, &dmpoints)); 2223720e594eSMatthew G. Knepley for (c = cStart; c < cEnd; ++c) { 2224720e594eSMatthew G. Knepley PetscBool invalidCell = PETSC_TRUE; 2225720e594eSMatthew G. Knepley PetscInt *closure = NULL; 2226720e594eSMatthew G. Knepley PetscInt closureSize, cl; 2227720e594eSMatthew G. Knepley 22289566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(dm, dmpoints[c], PETSC_TRUE, &closureSize, &closure)); 2229720e594eSMatthew G. Knepley for (cl = 0; cl < closureSize * 2; cl += 2) { 2230720e594eSMatthew G. Knepley PetscInt value = 0; 2231720e594eSMatthew G. Knepley 2232720e594eSMatthew G. Knepley if ((closure[cl] < vStart) || (closure[cl] >= vEnd)) continue; 22339566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, closure[cl], &value)); 22349371c9d4SSatish Balay if (value == defaultValue) { 22359371c9d4SSatish Balay invalidCell = PETSC_FALSE; 22369371c9d4SSatish Balay break; 22379371c9d4SSatish Balay } 2238720e594eSMatthew G. Knepley } 22399566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dm, dmpoints[c], PETSC_TRUE, &closureSize, &closure)); 2240720e594eSMatthew G. Knepley if (invalidCell) { 22419566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(subpointIS, &dmpoints)); 22429566063dSJacob Faibussowitsch PetscCall(ISDestroy(&subpointIS)); 22439566063dSJacob Faibussowitsch PetscCall(DMDestroy(&subdm)); 224463a3b9bcSJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Ambiguous submesh. Cell %" PetscInt_FMT " has all of its vertices on the submesh.", dmpoints[c]); 2245720e594eSMatthew G. Knepley } 2246720e594eSMatthew G. Knepley } 22479566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(subpointIS, &dmpoints)); 2248720e594eSMatthew G. Knepley PetscFunctionReturn(0); 2249720e594eSMatthew G. Knepley } 2250720e594eSMatthew G. Knepley 2251c08575a3SMatthew G. Knepley /*@ 22523cf72582SMatthew G. Knepley DMPlexCreateHybridMesh - Create a mesh with hybrid cells along an internal interface 22533cf72582SMatthew G. Knepley 22543cf72582SMatthew G. Knepley Collective on dm 22553cf72582SMatthew G. Knepley 22563cf72582SMatthew G. Knepley Input Parameters: 22573cf72582SMatthew G. Knepley + dm - The original DM 2258720e594eSMatthew G. Knepley . label - The label specifying the interface vertices 2259caf9e14dSMatthew G. Knepley . bdlabel - The optional label specifying the interface boundary vertices 2260caf9e14dSMatthew G. Knepley - bdvalue - Value of optional label specifying the interface boundary vertices 22613cf72582SMatthew G. Knepley 22623cf72582SMatthew G. Knepley Output Parameters: 22637db7e0a7SMatthew G. Knepley + hybridLabel - The label fully marking the interface, or NULL if no output is desired 22647db7e0a7SMatthew G. Knepley . splitLabel - The label containing the split points, or NULL if no output is desired 2265720e594eSMatthew G. Knepley . dmInterface - The new interface DM, or NULL 2266720e594eSMatthew G. Knepley - dmHybrid - The new DM with cohesive cells 22673cf72582SMatthew G. Knepley 22686eccb800SMatthew Knepley Note: The hybridLabel indicates what parts of the original mesh impinged on the on division surface. For points 22696eccb800SMatthew Knepley directly on the division surface, they are labeled with their dimension, so an edge 7 on the division surface would be 22706eccb800SMatthew Knepley 7 (1) in hybridLabel. For points that impinge from the positive side, they are labeled with 100+dim, so an edge 6 with 22716eccb800SMatthew Knepley one vertex 3 on the surface would be 6 (101) and 3 (0) in hybridLabel. If an edge 9 from the negative side of the 22726eccb800SMatthew Knepley surface also hits vertex 3, it would be 9 (-101) in hybridLabel. 22736eccb800SMatthew Knepley 22746eccb800SMatthew Knepley The splitLabel indicates what points in the new hybrid mesh were the result of splitting points in the original 22756eccb800SMatthew Knepley mesh. The label value is +=100+dim for each point. For example, if two edges 10 and 14 in the hybrid resulting from 22766eccb800SMatthew Knepley splitting an edge in the original mesh, you would have 10 (101) and 14 (-101) in the splitLabel. 22776eccb800SMatthew Knepley 22786eccb800SMatthew Knepley The dmInterface is a DM built from the original division surface. It has a label which can be retrieved using 22796eccb800SMatthew Knepley DMPlexGetSubpointMap() which maps each point back to the point in the surface of the original mesh. 22806eccb800SMatthew Knepley 22813cf72582SMatthew G. Knepley Level: developer 22823cf72582SMatthew G. Knepley 2283db781477SPatrick Sanan .seealso: `DMPlexConstructCohesiveCells()`, `DMPlexLabelCohesiveComplete()`, `DMPlexGetSubpointMap()`, `DMCreate()` 22843cf72582SMatthew G. Knepley @*/ 2285d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexCreateHybridMesh(DM dm, DMLabel label, DMLabel bdlabel, PetscInt bdvalue, DMLabel *hybridLabel, DMLabel *splitLabel, DM *dmInterface, DM *dmHybrid) 2286d71ae5a4SJacob Faibussowitsch { 22873cf72582SMatthew G. Knepley DM idm; 22887db7e0a7SMatthew G. Knepley DMLabel subpointMap, hlabel, slabel = NULL; 22893cf72582SMatthew G. Knepley PetscInt dim; 22903cf72582SMatthew G. Knepley 22913cf72582SMatthew G. Knepley PetscFunctionBegin; 22923cf72582SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 229392ef8ba2SVaclav Hapla if (label) PetscValidPointer(label, 2); 2294720e594eSMatthew G. Knepley if (bdlabel) PetscValidPointer(bdlabel, 3); 229592ef8ba2SVaclav Hapla if (hybridLabel) PetscValidPointer(hybridLabel, 5); 229692ef8ba2SVaclav Hapla if (splitLabel) PetscValidPointer(splitLabel, 6); 229792ef8ba2SVaclav Hapla if (dmInterface) PetscValidPointer(dmInterface, 7); 229892ef8ba2SVaclav Hapla PetscValidPointer(dmHybrid, 8); 22999566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 23009566063dSJacob Faibussowitsch PetscCall(DMPlexCreateSubmesh(dm, label, 1, PETSC_FALSE, &idm)); 23019566063dSJacob Faibussowitsch PetscCall(DMPlexCheckValidSubmesh_Private(dm, label, idm)); 23029566063dSJacob Faibussowitsch PetscCall(DMPlexOrient(idm)); 23039566063dSJacob Faibussowitsch PetscCall(DMPlexGetSubpointMap(idm, &subpointMap)); 23049566063dSJacob Faibussowitsch PetscCall(DMLabelDuplicate(subpointMap, &hlabel)); 23059566063dSJacob Faibussowitsch PetscCall(DMLabelClearStratum(hlabel, dim)); 23067db7e0a7SMatthew G. Knepley if (splitLabel) { 23077db7e0a7SMatthew G. Knepley const char *name; 23087db7e0a7SMatthew G. Knepley char sname[PETSC_MAX_PATH_LEN]; 23097db7e0a7SMatthew G. Knepley 23109566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)hlabel, &name)); 23119566063dSJacob Faibussowitsch PetscCall(PetscStrncpy(sname, name, PETSC_MAX_PATH_LEN)); 23129566063dSJacob Faibussowitsch PetscCall(PetscStrcat(sname, " split")); 23139566063dSJacob Faibussowitsch PetscCall(DMLabelCreate(PETSC_COMM_SELF, sname, &slabel)); 23147db7e0a7SMatthew G. Knepley } 2315caf9e14dSMatthew G. Knepley PetscCall(DMPlexLabelCohesiveComplete(dm, hlabel, bdlabel, bdvalue, PETSC_FALSE, idm)); 23169371c9d4SSatish Balay if (dmInterface) { 23179371c9d4SSatish Balay *dmInterface = idm; 23189371c9d4SSatish Balay } else PetscCall(DMDestroy(&idm)); 23199566063dSJacob Faibussowitsch PetscCall(DMPlexConstructCohesiveCells(dm, hlabel, slabel, dmHybrid)); 23205de52c6dSVaclav Hapla PetscCall(DMPlexCopy_Internal(dm, PETSC_TRUE, PETSC_TRUE, *dmHybrid)); 23213cf72582SMatthew G. Knepley if (hybridLabel) *hybridLabel = hlabel; 23229566063dSJacob Faibussowitsch else PetscCall(DMLabelDestroy(&hlabel)); 23237db7e0a7SMatthew G. Knepley if (splitLabel) *splitLabel = slabel; 23244a7ee7d0SMatthew G. Knepley { 23254a7ee7d0SMatthew G. Knepley DM cdm; 23264a7ee7d0SMatthew G. Knepley DMLabel ctLabel; 23274a7ee7d0SMatthew G. Knepley 23284a7ee7d0SMatthew G. Knepley /* We need to somehow share the celltype label with the coordinate dm */ 23299566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDM(*dmHybrid, &cdm)); 23309566063dSJacob Faibussowitsch PetscCall(DMPlexGetCellTypeLabel(*dmHybrid, &ctLabel)); 23319566063dSJacob Faibussowitsch PetscCall(DMSetLabel(cdm, ctLabel)); 23324a7ee7d0SMatthew G. Knepley } 2333cd0c2139SMatthew G Knepley PetscFunctionReturn(0); 2334cd0c2139SMatthew G Knepley } 2335cd0c2139SMatthew G Knepley 2336efa14ee0SMatthew G Knepley /* Here we need the explicit assumption that: 2337efa14ee0SMatthew G Knepley 2338efa14ee0SMatthew G Knepley For any marked cell, the marked vertices constitute a single face 2339efa14ee0SMatthew G Knepley */ 2340d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexMarkSubmesh_Uninterpolated(DM dm, DMLabel vertexLabel, PetscInt value, DMLabel subpointMap, PetscInt *numFaces, PetscInt *nFV, DM subdm) 2341d71ae5a4SJacob Faibussowitsch { 2342fed694aaSMatthew G. Knepley IS subvertexIS = NULL; 2343efa14ee0SMatthew G Knepley const PetscInt *subvertices; 2344412e9a14SMatthew G. Knepley PetscInt *pStart, *pEnd, pSize; 2345efa14ee0SMatthew G Knepley PetscInt depth, dim, d, numSubVerticesInitial = 0, v; 2346efa14ee0SMatthew G Knepley 2347efa14ee0SMatthew G Knepley PetscFunctionBegin; 2348efa14ee0SMatthew G Knepley *numFaces = 0; 2349efa14ee0SMatthew G Knepley *nFV = 0; 23509566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepth(dm, &depth)); 23519566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 235277d178adSMatthew G. Knepley pSize = PetscMax(depth, dim) + 1; 23539566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(pSize, &pStart, pSize, &pEnd)); 235448a46eb9SPierre Jolivet for (d = 0; d <= depth; ++d) PetscCall(DMPlexGetSimplexOrBoxCells(dm, depth - d, &pStart[d], &pEnd[d])); 2355efa14ee0SMatthew G Knepley /* Loop over initial vertices and mark all faces in the collective star() */ 23569566063dSJacob Faibussowitsch if (vertexLabel) PetscCall(DMLabelGetStratumIS(vertexLabel, value, &subvertexIS)); 2357efa14ee0SMatthew G Knepley if (subvertexIS) { 23589566063dSJacob Faibussowitsch PetscCall(ISGetSize(subvertexIS, &numSubVerticesInitial)); 23599566063dSJacob Faibussowitsch PetscCall(ISGetIndices(subvertexIS, &subvertices)); 2360efa14ee0SMatthew G Knepley } 2361efa14ee0SMatthew G Knepley for (v = 0; v < numSubVerticesInitial; ++v) { 2362efa14ee0SMatthew G Knepley const PetscInt vertex = subvertices[v]; 23630298fd71SBarry Smith PetscInt *star = NULL; 2364efa14ee0SMatthew G Knepley PetscInt starSize, s, numCells = 0, c; 2365efa14ee0SMatthew G Knepley 23669566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(dm, vertex, PETSC_FALSE, &starSize, &star)); 2367efa14ee0SMatthew G Knepley for (s = 0; s < starSize * 2; s += 2) { 2368efa14ee0SMatthew G Knepley const PetscInt point = star[s]; 2369efa14ee0SMatthew G Knepley if ((point >= pStart[depth]) && (point < pEnd[depth])) star[numCells++] = point; 2370efa14ee0SMatthew G Knepley } 2371efa14ee0SMatthew G Knepley for (c = 0; c < numCells; ++c) { 2372efa14ee0SMatthew G Knepley const PetscInt cell = star[c]; 23730298fd71SBarry Smith PetscInt *closure = NULL; 2374efa14ee0SMatthew G Knepley PetscInt closureSize, cl; 2375efa14ee0SMatthew G Knepley PetscInt cellLoc, numCorners = 0, faceSize = 0; 2376efa14ee0SMatthew G Knepley 23779566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(subpointMap, cell, &cellLoc)); 237865560c7fSMatthew G Knepley if (cellLoc == 2) continue; 237963a3b9bcSJacob Faibussowitsch PetscCheck(cellLoc < 0, PetscObjectComm((PetscObject)dm), PETSC_ERR_PLIB, "Cell %" PetscInt_FMT " has dimension %" PetscInt_FMT " in the surface label", cell, cellLoc); 23809566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(dm, cell, PETSC_TRUE, &closureSize, &closure)); 2381efa14ee0SMatthew G Knepley for (cl = 0; cl < closureSize * 2; cl += 2) { 2382efa14ee0SMatthew G Knepley const PetscInt point = closure[cl]; 2383efa14ee0SMatthew G Knepley PetscInt vertexLoc; 2384efa14ee0SMatthew G Knepley 2385efa14ee0SMatthew G Knepley if ((point >= pStart[0]) && (point < pEnd[0])) { 2386efa14ee0SMatthew G Knepley ++numCorners; 23879566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(vertexLabel, point, &vertexLoc)); 2388830e53efSMatthew G. Knepley if (vertexLoc == value) closure[faceSize++] = point; 2389efa14ee0SMatthew G Knepley } 2390efa14ee0SMatthew G Knepley } 23919566063dSJacob Faibussowitsch if (!(*nFV)) PetscCall(DMPlexGetNumFaceVertices(dm, dim, numCorners, nFV)); 239263a3b9bcSJacob Faibussowitsch PetscCheck(faceSize <= *nFV, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Invalid submesh: Too many vertices %" PetscInt_FMT " of an element on the surface", faceSize); 2393efa14ee0SMatthew G Knepley if (faceSize == *nFV) { 2394007baee2SMatthew G. Knepley const PetscInt *cells = NULL; 2395007baee2SMatthew G. Knepley PetscInt numCells, nc; 2396007baee2SMatthew G. Knepley 2397efa14ee0SMatthew G Knepley ++(*numFaces); 239848a46eb9SPierre Jolivet for (cl = 0; cl < faceSize; ++cl) PetscCall(DMLabelSetValue(subpointMap, closure[cl], 0)); 23999566063dSJacob Faibussowitsch PetscCall(DMPlexGetJoin(dm, faceSize, closure, &numCells, &cells)); 240048a46eb9SPierre Jolivet for (nc = 0; nc < numCells; ++nc) PetscCall(DMLabelSetValue(subpointMap, cells[nc], 2)); 24019566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreJoin(dm, faceSize, closure, &numCells, &cells)); 2402efa14ee0SMatthew G Knepley } 24039566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dm, cell, PETSC_TRUE, &closureSize, &closure)); 2404efa14ee0SMatthew G Knepley } 24059566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dm, vertex, PETSC_FALSE, &starSize, &star)); 2406efa14ee0SMatthew G Knepley } 240748a46eb9SPierre Jolivet if (subvertexIS) PetscCall(ISRestoreIndices(subvertexIS, &subvertices)); 24089566063dSJacob Faibussowitsch PetscCall(ISDestroy(&subvertexIS)); 24099566063dSJacob Faibussowitsch PetscCall(PetscFree2(pStart, pEnd)); 2410efa14ee0SMatthew G Knepley PetscFunctionReturn(0); 2411efa14ee0SMatthew G Knepley } 2412efa14ee0SMatthew G Knepley 2413d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexMarkSubmesh_Interpolated(DM dm, DMLabel vertexLabel, PetscInt value, PetscBool markedFaces, DMLabel subpointMap, DM subdm) 2414d71ae5a4SJacob Faibussowitsch { 241534b4c39eSMatthew G. Knepley IS subvertexIS = NULL; 2416efa14ee0SMatthew G Knepley const PetscInt *subvertices; 2417412e9a14SMatthew G. Knepley PetscInt *pStart, *pEnd; 2418efa14ee0SMatthew G Knepley PetscInt dim, d, numSubVerticesInitial = 0, v; 2419efa14ee0SMatthew G Knepley 2420efa14ee0SMatthew G Knepley PetscFunctionBegin; 24219566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 24229566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(dim + 1, &pStart, dim + 1, &pEnd)); 242348a46eb9SPierre Jolivet for (d = 0; d <= dim; ++d) PetscCall(DMPlexGetSimplexOrBoxCells(dm, dim - d, &pStart[d], &pEnd[d])); 2424efa14ee0SMatthew G Knepley /* Loop over initial vertices and mark all faces in the collective star() */ 242534b4c39eSMatthew G. Knepley if (vertexLabel) { 24269566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(vertexLabel, value, &subvertexIS)); 2427efa14ee0SMatthew G Knepley if (subvertexIS) { 24289566063dSJacob Faibussowitsch PetscCall(ISGetSize(subvertexIS, &numSubVerticesInitial)); 24299566063dSJacob Faibussowitsch PetscCall(ISGetIndices(subvertexIS, &subvertices)); 2430efa14ee0SMatthew G Knepley } 243134b4c39eSMatthew G. Knepley } 2432efa14ee0SMatthew G Knepley for (v = 0; v < numSubVerticesInitial; ++v) { 2433efa14ee0SMatthew G Knepley const PetscInt vertex = subvertices[v]; 24340298fd71SBarry Smith PetscInt *star = NULL; 2435efa14ee0SMatthew G Knepley PetscInt starSize, s, numFaces = 0, f; 2436efa14ee0SMatthew G Knepley 24379566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(dm, vertex, PETSC_FALSE, &starSize, &star)); 2438efa14ee0SMatthew G Knepley for (s = 0; s < starSize * 2; s += 2) { 2439efa14ee0SMatthew G Knepley const PetscInt point = star[s]; 2440158acfadSMatthew G. Knepley PetscInt faceLoc; 2441158acfadSMatthew G. Knepley 2442158acfadSMatthew G. Knepley if ((point >= pStart[dim - 1]) && (point < pEnd[dim - 1])) { 2443158acfadSMatthew G. Knepley if (markedFaces) { 24449566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(vertexLabel, point, &faceLoc)); 2445158acfadSMatthew G. Knepley if (faceLoc < 0) continue; 2446158acfadSMatthew G. Knepley } 2447158acfadSMatthew G. Knepley star[numFaces++] = point; 2448158acfadSMatthew G. Knepley } 2449efa14ee0SMatthew G Knepley } 2450efa14ee0SMatthew G Knepley for (f = 0; f < numFaces; ++f) { 2451efa14ee0SMatthew G Knepley const PetscInt face = star[f]; 24520298fd71SBarry Smith PetscInt *closure = NULL; 2453efa14ee0SMatthew G Knepley PetscInt closureSize, c; 2454efa14ee0SMatthew G Knepley PetscInt faceLoc; 2455efa14ee0SMatthew G Knepley 24569566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(subpointMap, face, &faceLoc)); 2457efa14ee0SMatthew G Knepley if (faceLoc == dim - 1) continue; 245863a3b9bcSJacob Faibussowitsch PetscCheck(faceLoc < 0, PetscObjectComm((PetscObject)dm), PETSC_ERR_PLIB, "Face %" PetscInt_FMT " has dimension %" PetscInt_FMT " in the surface label", face, faceLoc); 24599566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(dm, face, PETSC_TRUE, &closureSize, &closure)); 2460efa14ee0SMatthew G Knepley for (c = 0; c < closureSize * 2; c += 2) { 2461efa14ee0SMatthew G Knepley const PetscInt point = closure[c]; 2462efa14ee0SMatthew G Knepley PetscInt vertexLoc; 2463efa14ee0SMatthew G Knepley 2464efa14ee0SMatthew G Knepley if ((point >= pStart[0]) && (point < pEnd[0])) { 24659566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(vertexLabel, point, &vertexLoc)); 2466830e53efSMatthew G. Knepley if (vertexLoc != value) break; 2467efa14ee0SMatthew G Knepley } 2468efa14ee0SMatthew G Knepley } 2469efa14ee0SMatthew G Knepley if (c == closureSize * 2) { 2470efa14ee0SMatthew G Knepley const PetscInt *support; 2471efa14ee0SMatthew G Knepley PetscInt supportSize, s; 2472efa14ee0SMatthew G Knepley 2473efa14ee0SMatthew G Knepley for (c = 0; c < closureSize * 2; c += 2) { 2474efa14ee0SMatthew G Knepley const PetscInt point = closure[c]; 2475efa14ee0SMatthew G Knepley 2476efa14ee0SMatthew G Knepley for (d = 0; d < dim; ++d) { 2477efa14ee0SMatthew G Knepley if ((point >= pStart[d]) && (point < pEnd[d])) { 24789566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(subpointMap, point, d)); 2479efa14ee0SMatthew G Knepley break; 2480efa14ee0SMatthew G Knepley } 2481efa14ee0SMatthew G Knepley } 2482efa14ee0SMatthew G Knepley } 24839566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dm, face, &supportSize)); 24849566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(dm, face, &support)); 248548a46eb9SPierre Jolivet for (s = 0; s < supportSize; ++s) PetscCall(DMLabelSetValue(subpointMap, support[s], dim)); 2486efa14ee0SMatthew G Knepley } 24879566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dm, face, PETSC_TRUE, &closureSize, &closure)); 2488efa14ee0SMatthew G Knepley } 24899566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dm, vertex, PETSC_FALSE, &starSize, &star)); 2490efa14ee0SMatthew G Knepley } 24919566063dSJacob Faibussowitsch if (subvertexIS) PetscCall(ISRestoreIndices(subvertexIS, &subvertices)); 24929566063dSJacob Faibussowitsch PetscCall(ISDestroy(&subvertexIS)); 24939566063dSJacob Faibussowitsch PetscCall(PetscFree2(pStart, pEnd)); 2494efa14ee0SMatthew G Knepley PetscFunctionReturn(0); 2495efa14ee0SMatthew G Knepley } 2496efa14ee0SMatthew G Knepley 2497d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexMarkCohesiveSubmesh_Uninterpolated(DM dm, PetscBool hasLagrange, const char labelname[], PetscInt value, DMLabel subpointMap, PetscInt *numFaces, PetscInt *nFV, PetscInt *subCells[], DM subdm) 2498d71ae5a4SJacob Faibussowitsch { 249927c04023SMatthew G. Knepley DMLabel label = NULL; 2500766ab985SMatthew G. Knepley const PetscInt *cone; 25019fc93327SToby Isaac PetscInt dim, cMax, cEnd, c, subc = 0, p, coneSize = -1; 2502766ab985SMatthew G. Knepley 2503812bfc34SJed Brown PetscFunctionBegin; 2504c0ed958bSJed Brown *numFaces = 0; 2505c0ed958bSJed Brown *nFV = 0; 25069566063dSJacob Faibussowitsch if (labelname) PetscCall(DMGetLabel(dm, labelname, &label)); 2507fed694aaSMatthew G. Knepley *subCells = NULL; 25089566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 25099566063dSJacob Faibussowitsch PetscCall(DMPlexGetTensorPrismBounds_Internal(dm, dim, &cMax, &cEnd)); 2510766ab985SMatthew G. Knepley if (cMax < 0) PetscFunctionReturn(0); 251127c04023SMatthew G. Knepley if (label) { 251227c04023SMatthew G. Knepley for (c = cMax; c < cEnd; ++c) { 251327c04023SMatthew G. Knepley PetscInt val; 251427c04023SMatthew G. Knepley 25159566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, c, &val)); 251627c04023SMatthew G. Knepley if (val == value) { 251727c04023SMatthew G. Knepley ++(*numFaces); 25189566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, c, &coneSize)); 251927c04023SMatthew G. Knepley } 252027c04023SMatthew G. Knepley } 252127c04023SMatthew G. Knepley } else { 2522766ab985SMatthew G. Knepley *numFaces = cEnd - cMax; 25239566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, cMax, &coneSize)); 252427c04023SMatthew G. Knepley } 25259566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(*numFaces * 2, subCells)); 25269fc93327SToby Isaac if (!(*numFaces)) PetscFunctionReturn(0); 25279fc93327SToby Isaac *nFV = hasLagrange ? coneSize / 3 : coneSize / 2; 2528766ab985SMatthew G. Knepley for (c = cMax; c < cEnd; ++c) { 2529766ab985SMatthew G. Knepley const PetscInt *cells; 2530766ab985SMatthew G. Knepley PetscInt numCells; 2531766ab985SMatthew G. Knepley 253227c04023SMatthew G. Knepley if (label) { 253327c04023SMatthew G. Knepley PetscInt val; 253427c04023SMatthew G. Knepley 25359566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, c, &val)); 253627c04023SMatthew G. Knepley if (val != value) continue; 253727c04023SMatthew G. Knepley } 25389566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, c, &cone)); 253948a46eb9SPierre Jolivet for (p = 0; p < *nFV; ++p) PetscCall(DMLabelSetValue(subpointMap, cone[p], 0)); 2540766ab985SMatthew G. Knepley /* Negative face */ 25419566063dSJacob Faibussowitsch PetscCall(DMPlexGetJoin(dm, *nFV, cone, &numCells, &cells)); 254227234c99SMatthew G. Knepley /* Not true in parallel 254308401ef6SPierre Jolivet PetscCheck(numCells == 2,PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Cohesive cells should separate two cells"); */ 2544766ab985SMatthew G. Knepley for (p = 0; p < numCells; ++p) { 25459566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(subpointMap, cells[p], 2)); 254627234c99SMatthew G. Knepley (*subCells)[subc++] = cells[p]; 2547766ab985SMatthew G. Knepley } 25489566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreJoin(dm, *nFV, cone, &numCells, &cells)); 2549766ab985SMatthew G. Knepley /* Positive face is not included */ 2550766ab985SMatthew G. Knepley } 2551766ab985SMatthew G. Knepley PetscFunctionReturn(0); 2552766ab985SMatthew G. Knepley } 2553766ab985SMatthew G. Knepley 2554d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexMarkCohesiveSubmesh_Interpolated(DM dm, DMLabel label, PetscInt value, DMLabel subpointMap, DM subdm) 2555d71ae5a4SJacob Faibussowitsch { 2556766ab985SMatthew G. Knepley PetscInt *pStart, *pEnd; 2557766ab985SMatthew G. Knepley PetscInt dim, cMax, cEnd, c, d; 2558766ab985SMatthew G. Knepley 2559812bfc34SJed Brown PetscFunctionBegin; 25609566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 25619566063dSJacob Faibussowitsch PetscCall(DMPlexGetTensorPrismBounds_Internal(dm, dim, &cMax, &cEnd)); 2562766ab985SMatthew G. Knepley if (cMax < 0) PetscFunctionReturn(0); 25639566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(dim + 1, &pStart, dim + 1, &pEnd)); 25649566063dSJacob Faibussowitsch for (d = 0; d <= dim; ++d) PetscCall(DMPlexGetDepthStratum(dm, d, &pStart[d], &pEnd[d])); 2565766ab985SMatthew G. Knepley for (c = cMax; c < cEnd; ++c) { 2566766ab985SMatthew G. Knepley const PetscInt *cone; 2567766ab985SMatthew G. Knepley PetscInt *closure = NULL; 2568b3154360SMatthew G. Knepley PetscInt fconeSize, coneSize, closureSize, cl, val; 2569766ab985SMatthew G. Knepley 257027c04023SMatthew G. Knepley if (label) { 25719566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, c, &val)); 257227c04023SMatthew G. Knepley if (val != value) continue; 257327c04023SMatthew G. Knepley } 25749566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, c, &coneSize)); 25759566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, c, &cone)); 25769566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, cone[0], &fconeSize)); 25771dca8a05SBarry Smith PetscCheck(coneSize == (fconeSize ? fconeSize : 1) + 2, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Cohesive cells should separate two cells"); 2578b3154360SMatthew G. Knepley /* Negative face */ 25799566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(dm, cone[0], PETSC_TRUE, &closureSize, &closure)); 2580766ab985SMatthew G. Knepley for (cl = 0; cl < closureSize * 2; cl += 2) { 2581766ab985SMatthew G. Knepley const PetscInt point = closure[cl]; 2582766ab985SMatthew G. Knepley 2583766ab985SMatthew G. Knepley for (d = 0; d <= dim; ++d) { 2584766ab985SMatthew G. Knepley if ((point >= pStart[d]) && (point < pEnd[d])) { 25859566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(subpointMap, point, d)); 2586766ab985SMatthew G. Knepley break; 2587766ab985SMatthew G. Knepley } 2588766ab985SMatthew G. Knepley } 2589766ab985SMatthew G. Knepley } 25909566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dm, cone[0], PETSC_TRUE, &closureSize, &closure)); 2591766ab985SMatthew G. Knepley /* Cells -- positive face is not included */ 2592766ab985SMatthew G. Knepley for (cl = 0; cl < 1; ++cl) { 2593766ab985SMatthew G. Knepley const PetscInt *support; 2594766ab985SMatthew G. Knepley PetscInt supportSize, s; 2595766ab985SMatthew G. Knepley 25969566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dm, cone[cl], &supportSize)); 259708401ef6SPierre Jolivet /* PetscCheck(supportSize == 2,PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Cohesive faces should separate two cells"); */ 25989566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(dm, cone[cl], &support)); 259948a46eb9SPierre Jolivet for (s = 0; s < supportSize; ++s) PetscCall(DMLabelSetValue(subpointMap, support[s], dim)); 2600766ab985SMatthew G. Knepley } 2601766ab985SMatthew G. Knepley } 26029566063dSJacob Faibussowitsch PetscCall(PetscFree2(pStart, pEnd)); 2603766ab985SMatthew G. Knepley PetscFunctionReturn(0); 2604766ab985SMatthew G. Knepley } 2605766ab985SMatthew G. Knepley 2606d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexGetFaceOrientation(DM dm, PetscInt cell, PetscInt numCorners, PetscInt indices[], PetscInt oppositeVertex, PetscInt origVertices[], PetscInt faceVertices[], PetscBool *posOriented) 2607d71ae5a4SJacob Faibussowitsch { 260882f516ccSBarry Smith MPI_Comm comm; 2609e6ccafaeSMatthew G Knepley PetscBool posOrient = PETSC_FALSE; 2610e6ccafaeSMatthew G Knepley const PetscInt debug = 0; 2611e6ccafaeSMatthew G Knepley PetscInt cellDim, faceSize, f; 2612e6ccafaeSMatthew G Knepley 261382f516ccSBarry Smith PetscFunctionBegin; 26149566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)dm, &comm)); 26159566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &cellDim)); 261663a3b9bcSJacob Faibussowitsch if (debug) PetscCall(PetscPrintf(comm, "cellDim: %" PetscInt_FMT " numCorners: %" PetscInt_FMT "\n", cellDim, numCorners)); 2617e6ccafaeSMatthew G Knepley 2618ddeab2a6SMatthew G. Knepley if (cellDim == 1 && numCorners == 2) { 2619ddeab2a6SMatthew G. Knepley /* Triangle */ 2620e6ccafaeSMatthew G Knepley faceSize = numCorners - 1; 2621e6ccafaeSMatthew G Knepley posOrient = !(oppositeVertex % 2) ? PETSC_TRUE : PETSC_FALSE; 2622ddeab2a6SMatthew G. Knepley } else if (cellDim == 2 && numCorners == 3) { 2623ddeab2a6SMatthew G. Knepley /* Triangle */ 2624ddeab2a6SMatthew G. Knepley faceSize = numCorners - 1; 2625ddeab2a6SMatthew G. Knepley posOrient = !(oppositeVertex % 2) ? PETSC_TRUE : PETSC_FALSE; 2626ddeab2a6SMatthew G. Knepley } else if (cellDim == 3 && numCorners == 4) { 2627ddeab2a6SMatthew G. Knepley /* Tetrahedron */ 2628ddeab2a6SMatthew G. Knepley faceSize = numCorners - 1; 2629ddeab2a6SMatthew G. Knepley posOrient = (oppositeVertex % 2) ? PETSC_TRUE : PETSC_FALSE; 2630e6ccafaeSMatthew G Knepley } else if (cellDim == 1 && numCorners == 3) { 2631e6ccafaeSMatthew G Knepley /* Quadratic line */ 2632e6ccafaeSMatthew G Knepley faceSize = 1; 2633e6ccafaeSMatthew G Knepley posOrient = PETSC_TRUE; 2634e6ccafaeSMatthew G Knepley } else if (cellDim == 2 && numCorners == 4) { 2635e6ccafaeSMatthew G Knepley /* Quads */ 2636e6ccafaeSMatthew G Knepley faceSize = 2; 2637e6ccafaeSMatthew G Knepley if ((indices[1] > indices[0]) && (indices[1] - indices[0] == 1)) { 2638e6ccafaeSMatthew G Knepley posOrient = PETSC_TRUE; 2639e6ccafaeSMatthew G Knepley } else if ((indices[0] == 3) && (indices[1] == 0)) { 2640e6ccafaeSMatthew G Knepley posOrient = PETSC_TRUE; 2641e6ccafaeSMatthew G Knepley } else { 2642e6ccafaeSMatthew G Knepley if (((indices[0] > indices[1]) && (indices[0] - indices[1] == 1)) || ((indices[0] == 0) && (indices[1] == 3))) { 2643e6ccafaeSMatthew G Knepley posOrient = PETSC_FALSE; 2644e6ccafaeSMatthew G Knepley } else SETERRQ(comm, PETSC_ERR_ARG_WRONG, "Invalid quad crossedge"); 2645e6ccafaeSMatthew G Knepley } 2646e6ccafaeSMatthew G Knepley } else if (cellDim == 2 && numCorners == 6) { 2647e6ccafaeSMatthew G Knepley /* Quadratic triangle (I hate this) */ 2648e6ccafaeSMatthew G Knepley /* Edges are determined by the first 2 vertices (corners of edges) */ 2649e6ccafaeSMatthew G Knepley const PetscInt faceSizeTri = 3; 2650e6ccafaeSMatthew G Knepley PetscInt sortedIndices[3], i, iFace; 2651e6ccafaeSMatthew G Knepley PetscBool found = PETSC_FALSE; 2652e6ccafaeSMatthew G Knepley PetscInt faceVerticesTriSorted[9] = { 2653e6ccafaeSMatthew G Knepley 0, 3, 4, /* bottom */ 2654e6ccafaeSMatthew G Knepley 1, 4, 5, /* right */ 2655e6ccafaeSMatthew G Knepley 2, 3, 5, /* left */ 2656e6ccafaeSMatthew G Knepley }; 2657e6ccafaeSMatthew G Knepley PetscInt faceVerticesTri[9] = { 2658e6ccafaeSMatthew G Knepley 0, 3, 4, /* bottom */ 2659e6ccafaeSMatthew G Knepley 1, 4, 5, /* right */ 2660e6ccafaeSMatthew G Knepley 2, 5, 3, /* left */ 2661e6ccafaeSMatthew G Knepley }; 2662e6ccafaeSMatthew G Knepley 2663e6ccafaeSMatthew G Knepley for (i = 0; i < faceSizeTri; ++i) sortedIndices[i] = indices[i]; 26649566063dSJacob Faibussowitsch PetscCall(PetscSortInt(faceSizeTri, sortedIndices)); 2665e6ccafaeSMatthew G Knepley for (iFace = 0; iFace < 3; ++iFace) { 2666e6ccafaeSMatthew G Knepley const PetscInt ii = iFace * faceSizeTri; 2667e6ccafaeSMatthew G Knepley PetscInt fVertex, cVertex; 2668e6ccafaeSMatthew G Knepley 26699371c9d4SSatish Balay if ((sortedIndices[0] == faceVerticesTriSorted[ii + 0]) && (sortedIndices[1] == faceVerticesTriSorted[ii + 1])) { 2670e6ccafaeSMatthew G Knepley for (fVertex = 0; fVertex < faceSizeTri; ++fVertex) { 2671e6ccafaeSMatthew G Knepley for (cVertex = 0; cVertex < faceSizeTri; ++cVertex) { 2672e6ccafaeSMatthew G Knepley if (indices[cVertex] == faceVerticesTri[ii + fVertex]) { 2673e6ccafaeSMatthew G Knepley faceVertices[fVertex] = origVertices[cVertex]; 2674e6ccafaeSMatthew G Knepley break; 2675e6ccafaeSMatthew G Knepley } 2676e6ccafaeSMatthew G Knepley } 2677e6ccafaeSMatthew G Knepley } 2678e6ccafaeSMatthew G Knepley found = PETSC_TRUE; 2679e6ccafaeSMatthew G Knepley break; 2680e6ccafaeSMatthew G Knepley } 2681e6ccafaeSMatthew G Knepley } 268228b400f6SJacob Faibussowitsch PetscCheck(found, comm, PETSC_ERR_ARG_WRONG, "Invalid tri crossface"); 2683e6ccafaeSMatthew G Knepley if (posOriented) *posOriented = PETSC_TRUE; 2684e6ccafaeSMatthew G Knepley PetscFunctionReturn(0); 2685e6ccafaeSMatthew G Knepley } else if (cellDim == 2 && numCorners == 9) { 2686e6ccafaeSMatthew G Knepley /* Quadratic quad (I hate this) */ 2687e6ccafaeSMatthew G Knepley /* Edges are determined by the first 2 vertices (corners of edges) */ 2688e6ccafaeSMatthew G Knepley const PetscInt faceSizeQuad = 3; 2689e6ccafaeSMatthew G Knepley PetscInt sortedIndices[3], i, iFace; 2690e6ccafaeSMatthew G Knepley PetscBool found = PETSC_FALSE; 2691e6ccafaeSMatthew G Knepley PetscInt faceVerticesQuadSorted[12] = { 2692e6ccafaeSMatthew G Knepley 0, 1, 4, /* bottom */ 2693e6ccafaeSMatthew G Knepley 1, 2, 5, /* right */ 2694e6ccafaeSMatthew G Knepley 2, 3, 6, /* top */ 2695e6ccafaeSMatthew G Knepley 0, 3, 7, /* left */ 2696e6ccafaeSMatthew G Knepley }; 2697e6ccafaeSMatthew G Knepley PetscInt faceVerticesQuad[12] = { 2698e6ccafaeSMatthew G Knepley 0, 1, 4, /* bottom */ 2699e6ccafaeSMatthew G Knepley 1, 2, 5, /* right */ 2700e6ccafaeSMatthew G Knepley 2, 3, 6, /* top */ 2701e6ccafaeSMatthew G Knepley 3, 0, 7, /* left */ 2702e6ccafaeSMatthew G Knepley }; 2703e6ccafaeSMatthew G Knepley 2704e6ccafaeSMatthew G Knepley for (i = 0; i < faceSizeQuad; ++i) sortedIndices[i] = indices[i]; 27059566063dSJacob Faibussowitsch PetscCall(PetscSortInt(faceSizeQuad, sortedIndices)); 2706e6ccafaeSMatthew G Knepley for (iFace = 0; iFace < 4; ++iFace) { 2707e6ccafaeSMatthew G Knepley const PetscInt ii = iFace * faceSizeQuad; 2708e6ccafaeSMatthew G Knepley PetscInt fVertex, cVertex; 2709e6ccafaeSMatthew G Knepley 27109371c9d4SSatish Balay if ((sortedIndices[0] == faceVerticesQuadSorted[ii + 0]) && (sortedIndices[1] == faceVerticesQuadSorted[ii + 1])) { 2711e6ccafaeSMatthew G Knepley for (fVertex = 0; fVertex < faceSizeQuad; ++fVertex) { 2712e6ccafaeSMatthew G Knepley for (cVertex = 0; cVertex < faceSizeQuad; ++cVertex) { 2713e6ccafaeSMatthew G Knepley if (indices[cVertex] == faceVerticesQuad[ii + fVertex]) { 2714e6ccafaeSMatthew G Knepley faceVertices[fVertex] = origVertices[cVertex]; 2715e6ccafaeSMatthew G Knepley break; 2716e6ccafaeSMatthew G Knepley } 2717e6ccafaeSMatthew G Knepley } 2718e6ccafaeSMatthew G Knepley } 2719e6ccafaeSMatthew G Knepley found = PETSC_TRUE; 2720e6ccafaeSMatthew G Knepley break; 2721e6ccafaeSMatthew G Knepley } 2722e6ccafaeSMatthew G Knepley } 272328b400f6SJacob Faibussowitsch PetscCheck(found, comm, PETSC_ERR_ARG_WRONG, "Invalid quad crossface"); 2724e6ccafaeSMatthew G Knepley if (posOriented) *posOriented = PETSC_TRUE; 2725e6ccafaeSMatthew G Knepley PetscFunctionReturn(0); 2726e6ccafaeSMatthew G Knepley } else if (cellDim == 3 && numCorners == 8) { 2727e6ccafaeSMatthew G Knepley /* Hexes 2728e6ccafaeSMatthew G Knepley A hex is two oriented quads with the normal of the first 2729e6ccafaeSMatthew G Knepley pointing up at the second. 2730e6ccafaeSMatthew G Knepley 2731e6ccafaeSMatthew G Knepley 7---6 2732e6ccafaeSMatthew G Knepley /| /| 2733e6ccafaeSMatthew G Knepley 4---5 | 2734ddeab2a6SMatthew G. Knepley | 1-|-2 2735e6ccafaeSMatthew G Knepley |/ |/ 2736ddeab2a6SMatthew G. Knepley 0---3 2737e6ccafaeSMatthew G Knepley 2738e6ccafaeSMatthew G Knepley Faces are determined by the first 4 vertices (corners of faces) */ 2739e6ccafaeSMatthew G Knepley const PetscInt faceSizeHex = 4; 2740e6ccafaeSMatthew G Knepley PetscInt sortedIndices[4], i, iFace; 2741e6ccafaeSMatthew G Knepley PetscBool found = PETSC_FALSE; 2742e6ccafaeSMatthew G Knepley PetscInt faceVerticesHexSorted[24] = { 2743e6ccafaeSMatthew G Knepley 0, 1, 2, 3, /* bottom */ 2744e6ccafaeSMatthew G Knepley 4, 5, 6, 7, /* top */ 2745ddeab2a6SMatthew G. Knepley 0, 3, 4, 5, /* front */ 2746ddeab2a6SMatthew G. Knepley 2, 3, 5, 6, /* right */ 2747ddeab2a6SMatthew G. Knepley 1, 2, 6, 7, /* back */ 2748ddeab2a6SMatthew G. Knepley 0, 1, 4, 7, /* left */ 2749e6ccafaeSMatthew G Knepley }; 2750e6ccafaeSMatthew G Knepley PetscInt faceVerticesHex[24] = { 2751ddeab2a6SMatthew G. Knepley 1, 2, 3, 0, /* bottom */ 2752e6ccafaeSMatthew G Knepley 4, 5, 6, 7, /* top */ 2753ddeab2a6SMatthew G. Knepley 0, 3, 5, 4, /* front */ 2754ddeab2a6SMatthew G. Knepley 3, 2, 6, 5, /* right */ 2755ddeab2a6SMatthew G. Knepley 2, 1, 7, 6, /* back */ 2756ddeab2a6SMatthew G. Knepley 1, 0, 4, 7, /* left */ 2757e6ccafaeSMatthew G Knepley }; 2758e6ccafaeSMatthew G Knepley 2759e6ccafaeSMatthew G Knepley for (i = 0; i < faceSizeHex; ++i) sortedIndices[i] = indices[i]; 27609566063dSJacob Faibussowitsch PetscCall(PetscSortInt(faceSizeHex, sortedIndices)); 2761e6ccafaeSMatthew G Knepley for (iFace = 0; iFace < 6; ++iFace) { 2762e6ccafaeSMatthew G Knepley const PetscInt ii = iFace * faceSizeHex; 2763e6ccafaeSMatthew G Knepley PetscInt fVertex, cVertex; 2764e6ccafaeSMatthew G Knepley 27659371c9d4SSatish Balay if ((sortedIndices[0] == faceVerticesHexSorted[ii + 0]) && (sortedIndices[1] == faceVerticesHexSorted[ii + 1]) && (sortedIndices[2] == faceVerticesHexSorted[ii + 2]) && (sortedIndices[3] == faceVerticesHexSorted[ii + 3])) { 2766e6ccafaeSMatthew G Knepley for (fVertex = 0; fVertex < faceSizeHex; ++fVertex) { 2767e6ccafaeSMatthew G Knepley for (cVertex = 0; cVertex < faceSizeHex; ++cVertex) { 2768e6ccafaeSMatthew G Knepley if (indices[cVertex] == faceVerticesHex[ii + fVertex]) { 2769e6ccafaeSMatthew G Knepley faceVertices[fVertex] = origVertices[cVertex]; 2770e6ccafaeSMatthew G Knepley break; 2771e6ccafaeSMatthew G Knepley } 2772e6ccafaeSMatthew G Knepley } 2773e6ccafaeSMatthew G Knepley } 2774e6ccafaeSMatthew G Knepley found = PETSC_TRUE; 2775e6ccafaeSMatthew G Knepley break; 2776e6ccafaeSMatthew G Knepley } 2777e6ccafaeSMatthew G Knepley } 277828b400f6SJacob Faibussowitsch PetscCheck(found, comm, PETSC_ERR_ARG_WRONG, "Invalid hex crossface"); 2779e6ccafaeSMatthew G Knepley if (posOriented) *posOriented = PETSC_TRUE; 2780e6ccafaeSMatthew G Knepley PetscFunctionReturn(0); 2781e6ccafaeSMatthew G Knepley } else if (cellDim == 3 && numCorners == 10) { 2782e6ccafaeSMatthew G Knepley /* Quadratic tet */ 2783e6ccafaeSMatthew G Knepley /* Faces are determined by the first 3 vertices (corners of faces) */ 2784e6ccafaeSMatthew G Knepley const PetscInt faceSizeTet = 6; 2785e6ccafaeSMatthew G Knepley PetscInt sortedIndices[6], i, iFace; 2786e6ccafaeSMatthew G Knepley PetscBool found = PETSC_FALSE; 2787e6ccafaeSMatthew G Knepley PetscInt faceVerticesTetSorted[24] = { 2788e6ccafaeSMatthew G Knepley 0, 1, 2, 6, 7, 8, /* bottom */ 2789e6ccafaeSMatthew G Knepley 0, 3, 4, 6, 7, 9, /* front */ 2790e6ccafaeSMatthew G Knepley 1, 4, 5, 7, 8, 9, /* right */ 2791e6ccafaeSMatthew G Knepley 2, 3, 5, 6, 8, 9, /* left */ 2792e6ccafaeSMatthew G Knepley }; 2793e6ccafaeSMatthew G Knepley PetscInt faceVerticesTet[24] = { 2794e6ccafaeSMatthew G Knepley 0, 1, 2, 6, 7, 8, /* bottom */ 2795e6ccafaeSMatthew G Knepley 0, 4, 3, 6, 7, 9, /* front */ 2796e6ccafaeSMatthew G Knepley 1, 5, 4, 7, 8, 9, /* right */ 2797e6ccafaeSMatthew G Knepley 2, 3, 5, 8, 6, 9, /* left */ 2798e6ccafaeSMatthew G Knepley }; 2799e6ccafaeSMatthew G Knepley 2800e6ccafaeSMatthew G Knepley for (i = 0; i < faceSizeTet; ++i) sortedIndices[i] = indices[i]; 28019566063dSJacob Faibussowitsch PetscCall(PetscSortInt(faceSizeTet, sortedIndices)); 2802e6ccafaeSMatthew G Knepley for (iFace = 0; iFace < 4; ++iFace) { 2803e6ccafaeSMatthew G Knepley const PetscInt ii = iFace * faceSizeTet; 2804e6ccafaeSMatthew G Knepley PetscInt fVertex, cVertex; 2805e6ccafaeSMatthew G Knepley 28069371c9d4SSatish Balay if ((sortedIndices[0] == faceVerticesTetSorted[ii + 0]) && (sortedIndices[1] == faceVerticesTetSorted[ii + 1]) && (sortedIndices[2] == faceVerticesTetSorted[ii + 2]) && (sortedIndices[3] == faceVerticesTetSorted[ii + 3])) { 2807e6ccafaeSMatthew G Knepley for (fVertex = 0; fVertex < faceSizeTet; ++fVertex) { 2808e6ccafaeSMatthew G Knepley for (cVertex = 0; cVertex < faceSizeTet; ++cVertex) { 2809e6ccafaeSMatthew G Knepley if (indices[cVertex] == faceVerticesTet[ii + fVertex]) { 2810e6ccafaeSMatthew G Knepley faceVertices[fVertex] = origVertices[cVertex]; 2811e6ccafaeSMatthew G Knepley break; 2812e6ccafaeSMatthew G Knepley } 2813e6ccafaeSMatthew G Knepley } 2814e6ccafaeSMatthew G Knepley } 2815e6ccafaeSMatthew G Knepley found = PETSC_TRUE; 2816e6ccafaeSMatthew G Knepley break; 2817e6ccafaeSMatthew G Knepley } 2818e6ccafaeSMatthew G Knepley } 281928b400f6SJacob Faibussowitsch PetscCheck(found, comm, PETSC_ERR_ARG_WRONG, "Invalid tet crossface"); 2820e6ccafaeSMatthew G Knepley if (posOriented) *posOriented = PETSC_TRUE; 2821e6ccafaeSMatthew G Knepley PetscFunctionReturn(0); 2822e6ccafaeSMatthew G Knepley } else if (cellDim == 3 && numCorners == 27) { 2823e6ccafaeSMatthew G Knepley /* Quadratic hexes (I hate this) 2824e6ccafaeSMatthew G Knepley A hex is two oriented quads with the normal of the first 2825e6ccafaeSMatthew G Knepley pointing up at the second. 2826e6ccafaeSMatthew G Knepley 2827e6ccafaeSMatthew G Knepley 7---6 2828e6ccafaeSMatthew G Knepley /| /| 2829e6ccafaeSMatthew G Knepley 4---5 | 2830e6ccafaeSMatthew G Knepley | 3-|-2 2831e6ccafaeSMatthew G Knepley |/ |/ 2832e6ccafaeSMatthew G Knepley 0---1 2833e6ccafaeSMatthew G Knepley 2834e6ccafaeSMatthew G Knepley Faces are determined by the first 4 vertices (corners of faces) */ 2835e6ccafaeSMatthew G Knepley const PetscInt faceSizeQuadHex = 9; 2836e6ccafaeSMatthew G Knepley PetscInt sortedIndices[9], i, iFace; 2837e6ccafaeSMatthew G Knepley PetscBool found = PETSC_FALSE; 2838e6ccafaeSMatthew G Knepley PetscInt faceVerticesQuadHexSorted[54] = { 2839e6ccafaeSMatthew G Knepley 0, 1, 2, 3, 8, 9, 10, 11, 24, /* bottom */ 2840e6ccafaeSMatthew G Knepley 4, 5, 6, 7, 12, 13, 14, 15, 25, /* top */ 2841e6ccafaeSMatthew G Knepley 0, 1, 4, 5, 8, 12, 16, 17, 22, /* front */ 2842e6ccafaeSMatthew G Knepley 1, 2, 5, 6, 9, 13, 17, 18, 21, /* right */ 2843e6ccafaeSMatthew G Knepley 2, 3, 6, 7, 10, 14, 18, 19, 23, /* back */ 2844e6ccafaeSMatthew G Knepley 0, 3, 4, 7, 11, 15, 16, 19, 20, /* left */ 2845e6ccafaeSMatthew G Knepley }; 2846e6ccafaeSMatthew G Knepley PetscInt faceVerticesQuadHex[54] = { 2847e6ccafaeSMatthew G Knepley 3, 2, 1, 0, 10, 9, 8, 11, 24, /* bottom */ 2848e6ccafaeSMatthew G Knepley 4, 5, 6, 7, 12, 13, 14, 15, 25, /* top */ 2849e6ccafaeSMatthew G Knepley 0, 1, 5, 4, 8, 17, 12, 16, 22, /* front */ 2850e6ccafaeSMatthew G Knepley 1, 2, 6, 5, 9, 18, 13, 17, 21, /* right */ 2851e6ccafaeSMatthew G Knepley 2, 3, 7, 6, 10, 19, 14, 18, 23, /* back */ 2852e6ccafaeSMatthew G Knepley 3, 0, 4, 7, 11, 16, 15, 19, 20 /* left */ 2853e6ccafaeSMatthew G Knepley }; 2854e6ccafaeSMatthew G Knepley 2855e6ccafaeSMatthew G Knepley for (i = 0; i < faceSizeQuadHex; ++i) sortedIndices[i] = indices[i]; 28569566063dSJacob Faibussowitsch PetscCall(PetscSortInt(faceSizeQuadHex, sortedIndices)); 2857e6ccafaeSMatthew G Knepley for (iFace = 0; iFace < 6; ++iFace) { 2858e6ccafaeSMatthew G Knepley const PetscInt ii = iFace * faceSizeQuadHex; 2859e6ccafaeSMatthew G Knepley PetscInt fVertex, cVertex; 2860e6ccafaeSMatthew G Knepley 28619371c9d4SSatish Balay if ((sortedIndices[0] == faceVerticesQuadHexSorted[ii + 0]) && (sortedIndices[1] == faceVerticesQuadHexSorted[ii + 1]) && (sortedIndices[2] == faceVerticesQuadHexSorted[ii + 2]) && (sortedIndices[3] == faceVerticesQuadHexSorted[ii + 3])) { 2862e6ccafaeSMatthew G Knepley for (fVertex = 0; fVertex < faceSizeQuadHex; ++fVertex) { 2863e6ccafaeSMatthew G Knepley for (cVertex = 0; cVertex < faceSizeQuadHex; ++cVertex) { 2864e6ccafaeSMatthew G Knepley if (indices[cVertex] == faceVerticesQuadHex[ii + fVertex]) { 2865e6ccafaeSMatthew G Knepley faceVertices[fVertex] = origVertices[cVertex]; 2866e6ccafaeSMatthew G Knepley break; 2867e6ccafaeSMatthew G Knepley } 2868e6ccafaeSMatthew G Knepley } 2869e6ccafaeSMatthew G Knepley } 2870e6ccafaeSMatthew G Knepley found = PETSC_TRUE; 2871e6ccafaeSMatthew G Knepley break; 2872e6ccafaeSMatthew G Knepley } 2873e6ccafaeSMatthew G Knepley } 287428b400f6SJacob Faibussowitsch PetscCheck(found, comm, PETSC_ERR_ARG_WRONG, "Invalid hex crossface"); 2875e6ccafaeSMatthew G Knepley if (posOriented) *posOriented = PETSC_TRUE; 2876e6ccafaeSMatthew G Knepley PetscFunctionReturn(0); 2877e6ccafaeSMatthew G Knepley } else SETERRQ(comm, PETSC_ERR_ARG_WRONG, "Unknown cell type for faceOrientation()."); 2878e6ccafaeSMatthew G Knepley if (!posOrient) { 28799566063dSJacob Faibussowitsch if (debug) PetscCall(PetscPrintf(comm, " Reversing initial face orientation\n")); 2880e6ccafaeSMatthew G Knepley for (f = 0; f < faceSize; ++f) faceVertices[f] = origVertices[faceSize - 1 - f]; 2881e6ccafaeSMatthew G Knepley } else { 28829566063dSJacob Faibussowitsch if (debug) PetscCall(PetscPrintf(comm, " Keeping initial face orientation\n")); 2883e6ccafaeSMatthew G Knepley for (f = 0; f < faceSize; ++f) faceVertices[f] = origVertices[f]; 2884e6ccafaeSMatthew G Knepley } 2885e6ccafaeSMatthew G Knepley if (posOriented) *posOriented = posOrient; 2886e6ccafaeSMatthew G Knepley PetscFunctionReturn(0); 2887e6ccafaeSMatthew G Knepley } 2888e6ccafaeSMatthew G Knepley 2889c08575a3SMatthew G. Knepley /*@ 2890c08575a3SMatthew G. Knepley DMPlexGetOrientedFace - Given a cell and a face, as a set of vertices, return the oriented face, as a set of vertices, 2891c08575a3SMatthew G. Knepley in faceVertices. The orientation is such that the face normal points out of the cell 2892c08575a3SMatthew G. Knepley 2893c08575a3SMatthew G. Knepley Not collective 2894c08575a3SMatthew G. Knepley 2895c08575a3SMatthew G. Knepley Input Parameters: 2896c08575a3SMatthew G. Knepley + dm - The original mesh 2897c08575a3SMatthew G. Knepley . cell - The cell mesh point 2898c08575a3SMatthew G. Knepley . faceSize - The number of vertices on the face 2899c08575a3SMatthew G. Knepley . face - The face vertices 2900c08575a3SMatthew G. Knepley . numCorners - The number of vertices on the cell 2901c08575a3SMatthew G. Knepley . indices - Local numbering of face vertices in cell cone 2902c08575a3SMatthew G. Knepley - origVertices - Original face vertices 2903c08575a3SMatthew G. Knepley 2904d8d19677SJose E. Roman Output Parameters: 2905c08575a3SMatthew G. Knepley + faceVertices - The face vertices properly oriented 2906c08575a3SMatthew G. Knepley - posOriented - PETSC_TRUE if the face was oriented with outward normal 2907c08575a3SMatthew G. Knepley 2908c08575a3SMatthew G. Knepley Level: developer 2909c08575a3SMatthew G. Knepley 2910db781477SPatrick Sanan .seealso: `DMPlexGetCone()` 2911c08575a3SMatthew G. Knepley @*/ 2912d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexGetOrientedFace(DM dm, PetscInt cell, PetscInt faceSize, const PetscInt face[], PetscInt numCorners, PetscInt indices[], PetscInt origVertices[], PetscInt faceVertices[], PetscBool *posOriented) 2913d71ae5a4SJacob Faibussowitsch { 29140298fd71SBarry Smith const PetscInt *cone = NULL; 2915e6ccafaeSMatthew G Knepley PetscInt coneSize, v, f, v2; 2916e6ccafaeSMatthew G Knepley PetscInt oppositeVertex = -1; 2917e6ccafaeSMatthew G Knepley 2918e6ccafaeSMatthew G Knepley PetscFunctionBegin; 29199566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, cell, &coneSize)); 29209566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, cell, &cone)); 2921e6ccafaeSMatthew G Knepley for (v = 0, v2 = 0; v < coneSize; ++v) { 2922e6ccafaeSMatthew G Knepley PetscBool found = PETSC_FALSE; 2923e6ccafaeSMatthew G Knepley 2924e6ccafaeSMatthew G Knepley for (f = 0; f < faceSize; ++f) { 2925e6ccafaeSMatthew G Knepley if (face[f] == cone[v]) { 29269371c9d4SSatish Balay found = PETSC_TRUE; 29279371c9d4SSatish Balay break; 2928e6ccafaeSMatthew G Knepley } 2929e6ccafaeSMatthew G Knepley } 2930e6ccafaeSMatthew G Knepley if (found) { 2931e6ccafaeSMatthew G Knepley indices[v2] = v; 2932e6ccafaeSMatthew G Knepley origVertices[v2] = cone[v]; 2933e6ccafaeSMatthew G Knepley ++v2; 2934e6ccafaeSMatthew G Knepley } else { 2935e6ccafaeSMatthew G Knepley oppositeVertex = v; 2936e6ccafaeSMatthew G Knepley } 2937e6ccafaeSMatthew G Knepley } 29389566063dSJacob Faibussowitsch PetscCall(DMPlexGetFaceOrientation(dm, cell, numCorners, indices, oppositeVertex, origVertices, faceVertices, posOriented)); 2939e6ccafaeSMatthew G Knepley PetscFunctionReturn(0); 2940e6ccafaeSMatthew G Knepley } 2941e6ccafaeSMatthew G Knepley 2942e6ccafaeSMatthew G Knepley /* 2943cd0c2139SMatthew G Knepley DMPlexInsertFace_Internal - Puts a face into the mesh 2944e6ccafaeSMatthew G Knepley 2945e6ccafaeSMatthew G Knepley Not collective 2946e6ccafaeSMatthew G Knepley 2947e6ccafaeSMatthew G Knepley Input Parameters: 2948e6ccafaeSMatthew G Knepley + dm - The DMPlex 2949e6ccafaeSMatthew G Knepley . numFaceVertex - The number of vertices in the face 2950e6ccafaeSMatthew G Knepley . faceVertices - The vertices in the face for dm 2951e6ccafaeSMatthew G Knepley . subfaceVertices - The vertices in the face for subdm 2952e6ccafaeSMatthew G Knepley . numCorners - The number of vertices in the cell 2953e6ccafaeSMatthew G Knepley . cell - A cell in dm containing the face 2954e6ccafaeSMatthew G Knepley . subcell - A cell in subdm containing the face 2955e6ccafaeSMatthew G Knepley . firstFace - First face in the mesh 2956e6ccafaeSMatthew G Knepley - newFacePoint - Next face in the mesh 2957e6ccafaeSMatthew G Knepley 2958e6ccafaeSMatthew G Knepley Output Parameters: 2959e6ccafaeSMatthew G Knepley . newFacePoint - Contains next face point number on input, updated on output 2960e6ccafaeSMatthew G Knepley 2961e6ccafaeSMatthew G Knepley Level: developer 2962e6ccafaeSMatthew G Knepley */ 2963d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexInsertFace_Internal(DM dm, DM subdm, PetscInt numFaceVertices, const PetscInt faceVertices[], const PetscInt subfaceVertices[], PetscInt numCorners, PetscInt cell, PetscInt subcell, PetscInt firstFace, PetscInt *newFacePoint) 2964d71ae5a4SJacob Faibussowitsch { 296582f516ccSBarry Smith MPI_Comm comm; 2966e6ccafaeSMatthew G Knepley DM_Plex *submesh = (DM_Plex *)subdm->data; 2967e6ccafaeSMatthew G Knepley const PetscInt *faces; 2968e6ccafaeSMatthew G Knepley PetscInt numFaces, coneSize; 2969e6ccafaeSMatthew G Knepley 2970e6ccafaeSMatthew G Knepley PetscFunctionBegin; 29719566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)dm, &comm)); 29729566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(subdm, subcell, &coneSize)); 297363a3b9bcSJacob Faibussowitsch PetscCheck(coneSize == 1, comm, PETSC_ERR_ARG_OUTOFRANGE, "Cone size of cell %" PetscInt_FMT " is %" PetscInt_FMT " != 1", cell, coneSize); 2974e6ccafaeSMatthew G Knepley #if 0 2975e6ccafaeSMatthew G Knepley /* Cannot use this because support() has not been constructed yet */ 29769566063dSJacob Faibussowitsch PetscCall(DMPlexGetJoin(subdm, numFaceVertices, subfaceVertices, &numFaces, &faces)); 2977e6ccafaeSMatthew G Knepley #else 2978e6ccafaeSMatthew G Knepley { 2979e6ccafaeSMatthew G Knepley PetscInt f; 2980e6ccafaeSMatthew G Knepley 2981e6ccafaeSMatthew G Knepley numFaces = 0; 29829566063dSJacob Faibussowitsch PetscCall(DMGetWorkArray(subdm, 1, MPIU_INT, (void **)&faces)); 2983e6ccafaeSMatthew G Knepley for (f = firstFace; f < *newFacePoint; ++f) { 2984e6ccafaeSMatthew G Knepley PetscInt dof, off, d; 2985e6ccafaeSMatthew G Knepley 29869566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(submesh->coneSection, f, &dof)); 29879566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(submesh->coneSection, f, &off)); 2988e6ccafaeSMatthew G Knepley /* Yes, I know this is quadratic, but I expect the sizes to be <5 */ 2989e6ccafaeSMatthew G Knepley for (d = 0; d < dof; ++d) { 2990e6ccafaeSMatthew G Knepley const PetscInt p = submesh->cones[off + d]; 2991e6ccafaeSMatthew G Knepley PetscInt v; 2992e6ccafaeSMatthew G Knepley 2993e6ccafaeSMatthew G Knepley for (v = 0; v < numFaceVertices; ++v) { 2994e6ccafaeSMatthew G Knepley if (subfaceVertices[v] == p) break; 2995e6ccafaeSMatthew G Knepley } 2996e6ccafaeSMatthew G Knepley if (v == numFaceVertices) break; 2997e6ccafaeSMatthew G Knepley } 2998e6ccafaeSMatthew G Knepley if (d == dof) { 2999e6ccafaeSMatthew G Knepley numFaces = 1; 3000e6ccafaeSMatthew G Knepley ((PetscInt *)faces)[0] = f; 3001e6ccafaeSMatthew G Knepley } 3002e6ccafaeSMatthew G Knepley } 3003e6ccafaeSMatthew G Knepley } 3004e6ccafaeSMatthew G Knepley #endif 300563a3b9bcSJacob Faibussowitsch PetscCheck(numFaces <= 1, comm, PETSC_ERR_ARG_WRONG, "Vertex set had %" PetscInt_FMT " faces, not one", numFaces); 3006f7d195e4SLawrence Mitchell if (numFaces == 1) { 3007e6ccafaeSMatthew G Knepley /* Add the other cell neighbor for this face */ 30089566063dSJacob Faibussowitsch PetscCall(DMPlexSetCone(subdm, subcell, faces)); 3009e6ccafaeSMatthew G Knepley } else { 3010e6ccafaeSMatthew G Knepley PetscInt *indices, *origVertices, *orientedVertices, *orientedSubVertices, v, ov; 3011e6ccafaeSMatthew G Knepley PetscBool posOriented; 3012e6ccafaeSMatthew G Knepley 30139566063dSJacob Faibussowitsch PetscCall(DMGetWorkArray(subdm, 4 * numFaceVertices * sizeof(PetscInt), MPIU_INT, &orientedVertices)); 3014e6ccafaeSMatthew G Knepley origVertices = &orientedVertices[numFaceVertices]; 3015e6ccafaeSMatthew G Knepley indices = &orientedVertices[numFaceVertices * 2]; 3016e6ccafaeSMatthew G Knepley orientedSubVertices = &orientedVertices[numFaceVertices * 3]; 30179566063dSJacob Faibussowitsch PetscCall(DMPlexGetOrientedFace(dm, cell, numFaceVertices, faceVertices, numCorners, indices, origVertices, orientedVertices, &posOriented)); 3018e6ccafaeSMatthew G Knepley /* TODO: I know that routine should return a permutation, not the indices */ 3019e6ccafaeSMatthew G Knepley for (v = 0; v < numFaceVertices; ++v) { 3020e6ccafaeSMatthew G Knepley const PetscInt vertex = faceVertices[v], subvertex = subfaceVertices[v]; 3021e6ccafaeSMatthew G Knepley for (ov = 0; ov < numFaceVertices; ++ov) { 3022e6ccafaeSMatthew G Knepley if (orientedVertices[ov] == vertex) { 3023e6ccafaeSMatthew G Knepley orientedSubVertices[ov] = subvertex; 3024e6ccafaeSMatthew G Knepley break; 3025e6ccafaeSMatthew G Knepley } 3026e6ccafaeSMatthew G Knepley } 302763a3b9bcSJacob Faibussowitsch PetscCheck(ov != numFaceVertices, comm, PETSC_ERR_PLIB, "Could not find face vertex %" PetscInt_FMT " in orientated set", vertex); 3028e6ccafaeSMatthew G Knepley } 30299566063dSJacob Faibussowitsch PetscCall(DMPlexSetCone(subdm, *newFacePoint, orientedSubVertices)); 30309566063dSJacob Faibussowitsch PetscCall(DMPlexSetCone(subdm, subcell, newFacePoint)); 30319566063dSJacob Faibussowitsch PetscCall(DMRestoreWorkArray(subdm, 4 * numFaceVertices * sizeof(PetscInt), MPIU_INT, &orientedVertices)); 3032e6ccafaeSMatthew G Knepley ++(*newFacePoint); 3033e6ccafaeSMatthew G Knepley } 3034ef07cca7SMatthew G. Knepley #if 0 30359566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreJoin(subdm, numFaceVertices, subfaceVertices, &numFaces, &faces)); 3036ef07cca7SMatthew G. Knepley #else 30379566063dSJacob Faibussowitsch PetscCall(DMRestoreWorkArray(subdm, 1, MPIU_INT, (void **)&faces)); 3038ef07cca7SMatthew G. Knepley #endif 3039e6ccafaeSMatthew G Knepley PetscFunctionReturn(0); 3040e6ccafaeSMatthew G Knepley } 3041e6ccafaeSMatthew G Knepley 3042d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexCreateSubmesh_Uninterpolated(DM dm, DMLabel vertexLabel, PetscInt value, DM subdm) 3043d71ae5a4SJacob Faibussowitsch { 304482f516ccSBarry Smith MPI_Comm comm; 304553156dfcSMatthew G. Knepley DMLabel subpointMap; 3046efa14ee0SMatthew G Knepley IS subvertexIS, subcellIS; 3047efa14ee0SMatthew G Knepley const PetscInt *subVertices, *subCells; 3048efa14ee0SMatthew G Knepley PetscInt numSubVertices, firstSubVertex, numSubCells; 3049fed694aaSMatthew G. Knepley PetscInt *subface, maxConeSize, numSubFaces = 0, firstSubFace, newFacePoint, nFV = 0; 3050efa14ee0SMatthew G Knepley PetscInt vStart, vEnd, c, f; 3051e6ccafaeSMatthew G Knepley 3052e6ccafaeSMatthew G Knepley PetscFunctionBegin; 30539566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)dm, &comm)); 3054efa14ee0SMatthew G Knepley /* Create subpointMap which marks the submesh */ 30559566063dSJacob Faibussowitsch PetscCall(DMLabelCreate(PETSC_COMM_SELF, "subpoint_map", &subpointMap)); 30569566063dSJacob Faibussowitsch PetscCall(DMPlexSetSubpointMap(subdm, subpointMap)); 30579566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&subpointMap)); 30589566063dSJacob Faibussowitsch if (vertexLabel) PetscCall(DMPlexMarkSubmesh_Uninterpolated(dm, vertexLabel, value, subpointMap, &numSubFaces, &nFV, subdm)); 3059efa14ee0SMatthew G Knepley /* Setup chart */ 30609566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumSize(subpointMap, 0, &numSubVertices)); 30619566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumSize(subpointMap, 2, &numSubCells)); 30629566063dSJacob Faibussowitsch PetscCall(DMPlexSetChart(subdm, 0, numSubCells + numSubFaces + numSubVertices)); 30639566063dSJacob Faibussowitsch PetscCall(DMPlexSetVTKCellHeight(subdm, 1)); 3064e6ccafaeSMatthew G Knepley /* Set cone sizes */ 3065e6ccafaeSMatthew G Knepley firstSubVertex = numSubCells; 3066efa14ee0SMatthew G Knepley firstSubFace = numSubCells + numSubVertices; 3067e6ccafaeSMatthew G Knepley newFacePoint = firstSubFace; 30689566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(subpointMap, 0, &subvertexIS)); 30699566063dSJacob Faibussowitsch if (subvertexIS) PetscCall(ISGetIndices(subvertexIS, &subVertices)); 30709566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(subpointMap, 2, &subcellIS)); 30719566063dSJacob Faibussowitsch if (subcellIS) PetscCall(ISGetIndices(subcellIS, &subCells)); 307248a46eb9SPierre Jolivet for (c = 0; c < numSubCells; ++c) PetscCall(DMPlexSetConeSize(subdm, c, 1)); 307348a46eb9SPierre Jolivet for (f = firstSubFace; f < firstSubFace + numSubFaces; ++f) PetscCall(DMPlexSetConeSize(subdm, f, nFV)); 30749566063dSJacob Faibussowitsch PetscCall(DMSetUp(subdm)); 3075e6ccafaeSMatthew G Knepley /* Create face cones */ 30769566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthStratum(dm, 0, &vStart, &vEnd)); 30779566063dSJacob Faibussowitsch PetscCall(DMPlexGetMaxSizes(dm, &maxConeSize, NULL)); 30789566063dSJacob Faibussowitsch PetscCall(DMGetWorkArray(subdm, maxConeSize, MPIU_INT, (void **)&subface)); 3079e6ccafaeSMatthew G Knepley for (c = 0; c < numSubCells; ++c) { 3080e6ccafaeSMatthew G Knepley const PetscInt cell = subCells[c]; 3081efa14ee0SMatthew G Knepley const PetscInt subcell = c; 30820298fd71SBarry Smith PetscInt *closure = NULL; 3083efa14ee0SMatthew G Knepley PetscInt closureSize, cl, numCorners = 0, faceSize = 0; 3084e6ccafaeSMatthew G Knepley 30859566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(dm, cell, PETSC_TRUE, &closureSize, &closure)); 3086efa14ee0SMatthew G Knepley for (cl = 0; cl < closureSize * 2; cl += 2) { 3087efa14ee0SMatthew G Knepley const PetscInt point = closure[cl]; 3088e6ccafaeSMatthew G Knepley PetscInt subVertex; 3089e6ccafaeSMatthew G Knepley 3090efa14ee0SMatthew G Knepley if ((point >= vStart) && (point < vEnd)) { 3091efa14ee0SMatthew G Knepley ++numCorners; 30929566063dSJacob Faibussowitsch PetscCall(PetscFindInt(point, numSubVertices, subVertices, &subVertex)); 3093efa14ee0SMatthew G Knepley if (subVertex >= 0) { 3094efa14ee0SMatthew G Knepley closure[faceSize] = point; 309565560c7fSMatthew G Knepley subface[faceSize] = firstSubVertex + subVertex; 3096e6ccafaeSMatthew G Knepley ++faceSize; 3097e6ccafaeSMatthew G Knepley } 3098e6ccafaeSMatthew G Knepley } 3099e6ccafaeSMatthew G Knepley } 310063a3b9bcSJacob Faibussowitsch PetscCheck(faceSize <= nFV, comm, PETSC_ERR_ARG_WRONG, "Invalid submesh: Too many vertices %" PetscInt_FMT " of an element on the surface", faceSize); 310148a46eb9SPierre Jolivet if (faceSize == nFV) PetscCall(DMPlexInsertFace_Internal(dm, subdm, faceSize, closure, subface, numCorners, cell, subcell, firstSubFace, &newFacePoint)); 31029566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dm, cell, PETSC_TRUE, &closureSize, &closure)); 3103e6ccafaeSMatthew G Knepley } 31049566063dSJacob Faibussowitsch PetscCall(DMRestoreWorkArray(subdm, maxConeSize, MPIU_INT, (void **)&subface)); 31059566063dSJacob Faibussowitsch PetscCall(DMPlexSymmetrize(subdm)); 31069566063dSJacob Faibussowitsch PetscCall(DMPlexStratify(subdm)); 3107e6ccafaeSMatthew G Knepley /* Build coordinates */ 3108efa14ee0SMatthew G Knepley { 3109efa14ee0SMatthew G Knepley PetscSection coordSection, subCoordSection; 3110efa14ee0SMatthew G Knepley Vec coordinates, subCoordinates; 3111efa14ee0SMatthew G Knepley PetscScalar *coords, *subCoords; 3112285d324eSMatthew G. Knepley PetscInt numComp, coordSize, v; 311324640c55SToby Isaac const char *name; 3114efa14ee0SMatthew G Knepley 31159566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateSection(dm, &coordSection)); 31169566063dSJacob Faibussowitsch PetscCall(DMGetCoordinatesLocal(dm, &coordinates)); 31179566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateSection(subdm, &subCoordSection)); 31189566063dSJacob Faibussowitsch PetscCall(PetscSectionSetNumFields(subCoordSection, 1)); 31199566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldComponents(coordSection, 0, &numComp)); 31209566063dSJacob Faibussowitsch PetscCall(PetscSectionSetFieldComponents(subCoordSection, 0, numComp)); 31219566063dSJacob Faibussowitsch PetscCall(PetscSectionSetChart(subCoordSection, firstSubVertex, firstSubVertex + numSubVertices)); 3122efa14ee0SMatthew G Knepley for (v = 0; v < numSubVertices; ++v) { 3123efa14ee0SMatthew G Knepley const PetscInt vertex = subVertices[v]; 3124efa14ee0SMatthew G Knepley const PetscInt subvertex = firstSubVertex + v; 3125efa14ee0SMatthew G Knepley PetscInt dof; 3126efa14ee0SMatthew G Knepley 31279566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(coordSection, vertex, &dof)); 31289566063dSJacob Faibussowitsch PetscCall(PetscSectionSetDof(subCoordSection, subvertex, dof)); 31299566063dSJacob Faibussowitsch PetscCall(PetscSectionSetFieldDof(subCoordSection, subvertex, 0, dof)); 3130e6ccafaeSMatthew G Knepley } 31319566063dSJacob Faibussowitsch PetscCall(PetscSectionSetUp(subCoordSection)); 31329566063dSJacob Faibussowitsch PetscCall(PetscSectionGetStorageSize(subCoordSection, &coordSize)); 31339566063dSJacob Faibussowitsch PetscCall(VecCreate(PETSC_COMM_SELF, &subCoordinates)); 31349566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)coordinates, &name)); 31359566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)subCoordinates, name)); 31369566063dSJacob Faibussowitsch PetscCall(VecSetSizes(subCoordinates, coordSize, PETSC_DETERMINE)); 31379566063dSJacob Faibussowitsch PetscCall(VecSetType(subCoordinates, VECSTANDARD)); 3138830e53efSMatthew G. Knepley if (coordSize) { 31399566063dSJacob Faibussowitsch PetscCall(VecGetArray(coordinates, &coords)); 31409566063dSJacob Faibussowitsch PetscCall(VecGetArray(subCoordinates, &subCoords)); 3141efa14ee0SMatthew G Knepley for (v = 0; v < numSubVertices; ++v) { 3142efa14ee0SMatthew G Knepley const PetscInt vertex = subVertices[v]; 3143efa14ee0SMatthew G Knepley const PetscInt subvertex = firstSubVertex + v; 3144efa14ee0SMatthew G Knepley PetscInt dof, off, sdof, soff, d; 3145e6ccafaeSMatthew G Knepley 31469566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(coordSection, vertex, &dof)); 31479566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(coordSection, vertex, &off)); 31489566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(subCoordSection, subvertex, &sdof)); 31499566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(subCoordSection, subvertex, &soff)); 315063a3b9bcSJacob Faibussowitsch PetscCheck(dof == sdof, comm, PETSC_ERR_PLIB, "Coordinate dimension %" PetscInt_FMT " on subvertex %" PetscInt_FMT ", vertex %" PetscInt_FMT " should be %" PetscInt_FMT, sdof, subvertex, vertex, dof); 3151e6ccafaeSMatthew G Knepley for (d = 0; d < dof; ++d) subCoords[soff + d] = coords[off + d]; 3152e6ccafaeSMatthew G Knepley } 31539566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(coordinates, &coords)); 31549566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(subCoordinates, &subCoords)); 31553b399e24SMatthew G. Knepley } 31569566063dSJacob Faibussowitsch PetscCall(DMSetCoordinatesLocal(subdm, subCoordinates)); 31579566063dSJacob Faibussowitsch PetscCall(VecDestroy(&subCoordinates)); 3158e6ccafaeSMatthew G Knepley } 3159efa14ee0SMatthew G Knepley /* Cleanup */ 31609566063dSJacob Faibussowitsch if (subvertexIS) PetscCall(ISRestoreIndices(subvertexIS, &subVertices)); 31619566063dSJacob Faibussowitsch PetscCall(ISDestroy(&subvertexIS)); 31629566063dSJacob Faibussowitsch if (subcellIS) PetscCall(ISRestoreIndices(subcellIS, &subCells)); 31639566063dSJacob Faibussowitsch PetscCall(ISDestroy(&subcellIS)); 3164e6ccafaeSMatthew G Knepley PetscFunctionReturn(0); 3165e6ccafaeSMatthew G Knepley } 3166e6ccafaeSMatthew G Knepley 3167d5b43468SJose E. Roman /* TODO: Fix this to properly propagate up error conditions it may find */ 3168d71ae5a4SJacob Faibussowitsch static inline PetscInt DMPlexFilterPoint_Internal(PetscInt point, PetscInt firstSubPoint, PetscInt numSubPoints, const PetscInt subPoints[]) 3169d71ae5a4SJacob Faibussowitsch { 31703982b651SMatthew G. Knepley PetscInt subPoint; 31713982b651SMatthew G. Knepley PetscErrorCode ierr; 31723982b651SMatthew G. Knepley 31739371c9d4SSatish Balay ierr = PetscFindInt(point, numSubPoints, subPoints, &subPoint); 31749371c9d4SSatish Balay if (ierr) return -1; 31753982b651SMatthew G. Knepley return subPoint < 0 ? subPoint : firstSubPoint + subPoint; 31763982b651SMatthew G. Knepley } 31773982b651SMatthew G. Knepley 3178d5b43468SJose E. Roman /* TODO: Fix this to properly propagate up error conditions it may find */ 3179d71ae5a4SJacob Faibussowitsch static inline PetscInt DMPlexFilterPointPerm_Internal(PetscInt point, PetscInt firstSubPoint, PetscInt numSubPoints, const PetscInt subPoints[], const PetscInt subIndices[]) 3180d71ae5a4SJacob Faibussowitsch { 3181dd05d810SMatthew G. Knepley PetscInt subPoint; 3182dd05d810SMatthew G. Knepley PetscErrorCode ierr; 3183dd05d810SMatthew G. Knepley 3184dd05d810SMatthew G. Knepley ierr = PetscFindInt(point, numSubPoints, subPoints, &subPoint); 3185dd05d810SMatthew G. Knepley if (ierr) return -1; 3186dd05d810SMatthew G. Knepley return subPoint < 0 ? subPoint : firstSubPoint + (subIndices ? subIndices[subPoint] : subPoint); 3187dd05d810SMatthew G. Knepley } 3188dd05d810SMatthew G. Knepley 3189d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexFilterLabels_Internal(DM dm, const PetscInt numSubPoints[], const PetscInt *subpoints[], const PetscInt firstSubPoint[], DM subdm) 3190d71ae5a4SJacob Faibussowitsch { 3191695799ffSMatthew G. Knepley DMLabel depthLabel; 3192212103e5SMatthew Knepley PetscInt Nl, l, d; 3193212103e5SMatthew Knepley 3194212103e5SMatthew Knepley PetscFunctionBegin; 3195695799ffSMatthew G. Knepley // Reset depth label for fast lookup 3196695799ffSMatthew G. Knepley PetscCall(DMPlexGetDepthLabel(dm, &depthLabel)); 3197695799ffSMatthew G. Knepley PetscCall(DMLabelMakeAllInvalid_Internal(depthLabel)); 31989566063dSJacob Faibussowitsch PetscCall(DMGetNumLabels(dm, &Nl)); 3199212103e5SMatthew Knepley for (l = 0; l < Nl; ++l) { 3200212103e5SMatthew Knepley DMLabel label, newlabel; 3201212103e5SMatthew Knepley const char *lname; 3202d56405f8SMatthew G. Knepley PetscBool isDepth, isDim, isCelltype, isVTK; 3203212103e5SMatthew Knepley IS valueIS; 3204212103e5SMatthew Knepley const PetscInt *values; 3205212103e5SMatthew Knepley PetscInt Nv, v; 3206212103e5SMatthew Knepley 32079566063dSJacob Faibussowitsch PetscCall(DMGetLabelName(dm, l, &lname)); 32089566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(lname, "depth", &isDepth)); 32099566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(lname, "dim", &isDim)); 32109566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(lname, "celltype", &isCelltype)); 32119566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(lname, "vtk", &isVTK)); 3212d56405f8SMatthew G. Knepley if (isDepth || isDim || isCelltype || isVTK) continue; 32139566063dSJacob Faibussowitsch PetscCall(DMCreateLabel(subdm, lname)); 32149566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, lname, &label)); 32159566063dSJacob Faibussowitsch PetscCall(DMGetLabel(subdm, lname, &newlabel)); 32169566063dSJacob Faibussowitsch PetscCall(DMLabelGetDefaultValue(label, &v)); 32179566063dSJacob Faibussowitsch PetscCall(DMLabelSetDefaultValue(newlabel, v)); 32189566063dSJacob Faibussowitsch PetscCall(DMLabelGetValueIS(label, &valueIS)); 32199566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(valueIS, &Nv)); 32209566063dSJacob Faibussowitsch PetscCall(ISGetIndices(valueIS, &values)); 3221212103e5SMatthew Knepley for (v = 0; v < Nv; ++v) { 3222212103e5SMatthew Knepley IS pointIS; 3223212103e5SMatthew Knepley const PetscInt *points; 3224212103e5SMatthew Knepley PetscInt Np, p; 3225212103e5SMatthew Knepley 32269566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(label, values[v], &pointIS)); 32279566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(pointIS, &Np)); 32289566063dSJacob Faibussowitsch PetscCall(ISGetIndices(pointIS, &points)); 3229212103e5SMatthew Knepley for (p = 0; p < Np; ++p) { 3230212103e5SMatthew Knepley const PetscInt point = points[p]; 3231212103e5SMatthew Knepley PetscInt subp; 3232212103e5SMatthew Knepley 32339566063dSJacob Faibussowitsch PetscCall(DMPlexGetPointDepth(dm, point, &d)); 3234212103e5SMatthew Knepley subp = DMPlexFilterPoint_Internal(point, firstSubPoint[d], numSubPoints[d], subpoints[d]); 32359566063dSJacob Faibussowitsch if (subp >= 0) PetscCall(DMLabelSetValue(newlabel, subp, values[v])); 3236212103e5SMatthew Knepley } 32379566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(pointIS, &points)); 32389566063dSJacob Faibussowitsch PetscCall(ISDestroy(&pointIS)); 3239212103e5SMatthew Knepley } 32409566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(valueIS, &values)); 32419566063dSJacob Faibussowitsch PetscCall(ISDestroy(&valueIS)); 3242212103e5SMatthew Knepley } 3243212103e5SMatthew Knepley PetscFunctionReturn(0); 3244212103e5SMatthew Knepley } 3245212103e5SMatthew Knepley 3246d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexCreateSubmeshGeneric_Interpolated(DM dm, DMLabel label, PetscInt value, PetscBool markedFaces, PetscBool isCohesive, PetscInt cellHeight, DM subdm) 3247d71ae5a4SJacob Faibussowitsch { 324882f516ccSBarry Smith MPI_Comm comm; 324953156dfcSMatthew G. Knepley DMLabel subpointMap; 3250efa14ee0SMatthew G Knepley IS *subpointIS; 3251efa14ee0SMatthew G Knepley const PetscInt **subpoints; 32523982b651SMatthew G. Knepley PetscInt *numSubPoints, *firstSubPoint, *coneNew, *orntNew; 3253dd05d810SMatthew G. Knepley PetscInt totSubPoints = 0, maxConeSize, dim, sdim, cdim, p, d, v; 32540d366550SMatthew G. Knepley PetscMPIInt rank; 3255e6ccafaeSMatthew G Knepley 3256e6ccafaeSMatthew G Knepley PetscFunctionBegin; 32579566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)dm, &comm)); 32589566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 3259efa14ee0SMatthew G Knepley /* Create subpointMap which marks the submesh */ 32609566063dSJacob Faibussowitsch PetscCall(DMLabelCreate(PETSC_COMM_SELF, "subpoint_map", &subpointMap)); 32619566063dSJacob Faibussowitsch PetscCall(DMPlexSetSubpointMap(subdm, subpointMap)); 3262bec263e5SMatthew G. Knepley if (cellHeight) { 32639566063dSJacob Faibussowitsch if (isCohesive) PetscCall(DMPlexMarkCohesiveSubmesh_Interpolated(dm, label, value, subpointMap, subdm)); 32649566063dSJacob Faibussowitsch else PetscCall(DMPlexMarkSubmesh_Interpolated(dm, label, value, markedFaces, subpointMap, subdm)); 3265bec263e5SMatthew G. Knepley } else { 3266bec263e5SMatthew G. Knepley DMLabel depth; 3267bec263e5SMatthew G. Knepley IS pointIS; 3268bec263e5SMatthew G. Knepley const PetscInt *points; 3269b85c8bf9SMatthew G. Knepley PetscInt numPoints = 0; 3270bec263e5SMatthew G. Knepley 32719566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthLabel(dm, &depth)); 32729566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(label, value, &pointIS)); 3273b85c8bf9SMatthew G. Knepley if (pointIS) { 32749566063dSJacob Faibussowitsch PetscCall(ISGetIndices(pointIS, &points)); 32759566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(pointIS, &numPoints)); 3276b85c8bf9SMatthew G. Knepley } 3277bec263e5SMatthew G. Knepley for (p = 0; p < numPoints; ++p) { 3278bec263e5SMatthew G. Knepley PetscInt *closure = NULL; 3279bec263e5SMatthew G. Knepley PetscInt closureSize, c, pdim; 3280bec263e5SMatthew G. Knepley 32819566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(dm, points[p], PETSC_TRUE, &closureSize, &closure)); 3282bec263e5SMatthew G. Knepley for (c = 0; c < closureSize * 2; c += 2) { 32839566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(depth, closure[c], &pdim)); 32849566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(subpointMap, closure[c], pdim)); 3285bec263e5SMatthew G. Knepley } 32869566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dm, points[p], PETSC_TRUE, &closureSize, &closure)); 3287bec263e5SMatthew G. Knepley } 32889566063dSJacob Faibussowitsch if (pointIS) PetscCall(ISRestoreIndices(pointIS, &points)); 32899566063dSJacob Faibussowitsch PetscCall(ISDestroy(&pointIS)); 3290bec263e5SMatthew G. Knepley } 3291efa14ee0SMatthew G Knepley /* Setup chart */ 32929566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 3293dd05d810SMatthew G. Knepley PetscCall(DMGetCoordinateDim(dm, &cdim)); 32949566063dSJacob Faibussowitsch PetscCall(PetscMalloc4(dim + 1, &numSubPoints, dim + 1, &firstSubPoint, dim + 1, &subpointIS, dim + 1, &subpoints)); 3295e6ccafaeSMatthew G Knepley for (d = 0; d <= dim; ++d) { 32969566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumSize(subpointMap, d, &numSubPoints[d])); 3297e6ccafaeSMatthew G Knepley totSubPoints += numSubPoints[d]; 3298e6ccafaeSMatthew G Knepley } 3299dd05d810SMatthew G. Knepley // Determine submesh dimension 3300dd05d810SMatthew G. Knepley PetscCall(DMGetDimension(subdm, &sdim)); 3301dd05d810SMatthew G. Knepley if (sdim > 0) { 3302dd05d810SMatthew G. Knepley // Calling function knows what dimension to use, and we include neighboring cells as well 3303dd05d810SMatthew G. Knepley sdim = dim; 3304dd05d810SMatthew G. Knepley } else { 3305dd05d810SMatthew G. Knepley // We reset the subdimension based on what is being selected 3306dd05d810SMatthew G. Knepley PetscInt lsdim; 3307dd05d810SMatthew G. Knepley for (lsdim = dim; lsdim >= 0; --lsdim) 3308dd05d810SMatthew G. Knepley if (numSubPoints[lsdim]) break; 3309dd05d810SMatthew G. Knepley PetscCall(MPI_Allreduce(&lsdim, &sdim, 1, MPIU_INT, MPIU_MAX, comm)); 3310dd05d810SMatthew G. Knepley PetscCall(DMSetDimension(subdm, sdim)); 3311dd05d810SMatthew G. Knepley PetscCall(DMSetCoordinateDim(subdm, cdim)); 3312dd05d810SMatthew G. Knepley } 33139566063dSJacob Faibussowitsch PetscCall(DMPlexSetChart(subdm, 0, totSubPoints)); 33149566063dSJacob Faibussowitsch PetscCall(DMPlexSetVTKCellHeight(subdm, cellHeight)); 3315e6ccafaeSMatthew G Knepley /* Set cone sizes */ 3316dd05d810SMatthew G. Knepley firstSubPoint[sdim] = 0; 3317dd05d810SMatthew G. Knepley firstSubPoint[0] = firstSubPoint[sdim] + numSubPoints[sdim]; 3318dd05d810SMatthew G. Knepley if (sdim > 1) firstSubPoint[sdim - 1] = firstSubPoint[0] + numSubPoints[0]; 3319dd05d810SMatthew G. Knepley if (sdim > 2) firstSubPoint[sdim - 2] = firstSubPoint[sdim - 1] + numSubPoints[sdim - 1]; 3320dd05d810SMatthew G. Knepley for (d = 0; d <= sdim; ++d) { 33219566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(subpointMap, d, &subpointIS[d])); 33229566063dSJacob Faibussowitsch if (subpointIS[d]) PetscCall(ISGetIndices(subpointIS[d], &subpoints[d])); 3323e6ccafaeSMatthew G Knepley } 3324412e9a14SMatthew G. Knepley /* We do not want this label automatically computed, instead we compute it here */ 33259566063dSJacob Faibussowitsch PetscCall(DMCreateLabel(subdm, "celltype")); 3326dd05d810SMatthew G. Knepley for (d = 0; d <= sdim; ++d) { 3327e6ccafaeSMatthew G Knepley for (p = 0; p < numSubPoints[d]; ++p) { 3328e6ccafaeSMatthew G Knepley const PetscInt point = subpoints[d][p]; 3329e6ccafaeSMatthew G Knepley const PetscInt subpoint = firstSubPoint[d] + p; 3330e6ccafaeSMatthew G Knepley const PetscInt *cone; 333115100a53SVaclav Hapla PetscInt coneSize; 3332e6ccafaeSMatthew G Knepley 33339566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, point, &coneSize)); 3334dd05d810SMatthew G. Knepley if (cellHeight && (d == sdim)) { 333515100a53SVaclav Hapla PetscInt coneSizeNew, c, val; 333615100a53SVaclav Hapla 33379566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, point, &cone)); 3338e6ccafaeSMatthew G Knepley for (c = 0, coneSizeNew = 0; c < coneSize; ++c) { 33399566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(subpointMap, cone[c], &val)); 3340e6ccafaeSMatthew G Knepley if (val >= 0) coneSizeNew++; 3341e6ccafaeSMatthew G Knepley } 33429566063dSJacob Faibussowitsch PetscCall(DMPlexSetConeSize(subdm, subpoint, coneSizeNew)); 33439566063dSJacob Faibussowitsch PetscCall(DMPlexSetCellType(subdm, subpoint, DM_POLYTOPE_FV_GHOST)); 334415100a53SVaclav Hapla } else { 334515100a53SVaclav Hapla DMPolytopeType ct; 334615100a53SVaclav Hapla 334715100a53SVaclav Hapla PetscCall(DMPlexSetConeSize(subdm, subpoint, coneSize)); 334815100a53SVaclav Hapla PetscCall(DMPlexGetCellType(dm, point, &ct)); 334915100a53SVaclav Hapla PetscCall(DMPlexSetCellType(subdm, subpoint, ct)); 3350e6ccafaeSMatthew G Knepley } 3351e6ccafaeSMatthew G Knepley } 3352e6ccafaeSMatthew G Knepley } 33539566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&subpointMap)); 33549566063dSJacob Faibussowitsch PetscCall(DMSetUp(subdm)); 3355e6ccafaeSMatthew G Knepley /* Set cones */ 33569566063dSJacob Faibussowitsch PetscCall(DMPlexGetMaxSizes(dm, &maxConeSize, NULL)); 33579566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(maxConeSize, &coneNew, maxConeSize, &orntNew)); 3358dd05d810SMatthew G. Knepley for (d = 0; d <= sdim; ++d) { 3359e6ccafaeSMatthew G Knepley for (p = 0; p < numSubPoints[d]; ++p) { 3360e6ccafaeSMatthew G Knepley const PetscInt point = subpoints[d][p]; 3361e6ccafaeSMatthew G Knepley const PetscInt subpoint = firstSubPoint[d] + p; 33620e49e2e2SMatthew G. Knepley const PetscInt *cone, *ornt; 33630d366550SMatthew G. Knepley PetscInt coneSize, subconeSize, coneSizeNew, c, subc, fornt = 0; 3364e6ccafaeSMatthew G Knepley 3365dd05d810SMatthew G. Knepley if (d == sdim - 1) { 33660d366550SMatthew G. Knepley const PetscInt *support, *cone, *ornt; 33670d366550SMatthew G. Knepley PetscInt supportSize, coneSize, s, subc; 33680d366550SMatthew G. Knepley 33699566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(dm, point, &support)); 33709566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dm, point, &supportSize)); 33710d366550SMatthew G. Knepley for (s = 0; s < supportSize; ++s) { 3372064cae4fSPierre Jolivet PetscBool isHybrid = PETSC_FALSE; 3373412e9a14SMatthew G. Knepley 33749566063dSJacob Faibussowitsch PetscCall(DMPlexCellIsHybrid_Internal(dm, support[s], &isHybrid)); 3375412e9a14SMatthew G. Knepley if (!isHybrid) continue; 33769566063dSJacob Faibussowitsch PetscCall(PetscFindInt(support[s], numSubPoints[d + 1], subpoints[d + 1], &subc)); 33770d366550SMatthew G. Knepley if (subc >= 0) { 33780d366550SMatthew G. Knepley const PetscInt ccell = subpoints[d + 1][subc]; 33790d366550SMatthew G. Knepley 33809566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, ccell, &cone)); 33819566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, ccell, &coneSize)); 33829566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeOrientation(dm, ccell, &ornt)); 33830d366550SMatthew G. Knepley for (c = 0; c < coneSize; ++c) { 33840d366550SMatthew G. Knepley if (cone[c] == point) { 33850d366550SMatthew G. Knepley fornt = ornt[c]; 33860d366550SMatthew G. Knepley break; 33870d366550SMatthew G. Knepley } 33880d366550SMatthew G. Knepley } 33890d366550SMatthew G. Knepley break; 33900d366550SMatthew G. Knepley } 33910d366550SMatthew G. Knepley } 33920d366550SMatthew G. Knepley } 33939566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, point, &coneSize)); 33949566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(subdm, subpoint, &subconeSize)); 33959566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, point, &cone)); 33969566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeOrientation(dm, point, &ornt)); 3397e6ccafaeSMatthew G Knepley for (c = 0, coneSizeNew = 0; c < coneSize; ++c) { 33989566063dSJacob Faibussowitsch PetscCall(PetscFindInt(cone[c], numSubPoints[d - 1], subpoints[d - 1], &subc)); 339901a2673eSMatthew G. Knepley if (subc >= 0) { 340001a2673eSMatthew G. Knepley coneNew[coneSizeNew] = firstSubPoint[d - 1] + subc; 34013982b651SMatthew G. Knepley orntNew[coneSizeNew] = ornt[c]; 340201a2673eSMatthew G. Knepley ++coneSizeNew; 340301a2673eSMatthew G. Knepley } 3404e6ccafaeSMatthew G Knepley } 340563a3b9bcSJacob Faibussowitsch PetscCheck(coneSizeNew == subconeSize, comm, PETSC_ERR_PLIB, "Number of cone points located %" PetscInt_FMT " does not match subcone size %" PetscInt_FMT, coneSizeNew, subconeSize); 34069566063dSJacob Faibussowitsch PetscCall(DMPlexSetCone(subdm, subpoint, coneNew)); 34079566063dSJacob Faibussowitsch PetscCall(DMPlexSetConeOrientation(subdm, subpoint, orntNew)); 34089566063dSJacob Faibussowitsch if (fornt < 0) PetscCall(DMPlexOrientPoint(subdm, subpoint, fornt)); 3409e6ccafaeSMatthew G Knepley } 3410e6ccafaeSMatthew G Knepley } 34119566063dSJacob Faibussowitsch PetscCall(PetscFree2(coneNew, orntNew)); 34129566063dSJacob Faibussowitsch PetscCall(DMPlexSymmetrize(subdm)); 34139566063dSJacob Faibussowitsch PetscCall(DMPlexStratify(subdm)); 3414e6ccafaeSMatthew G Knepley /* Build coordinates */ 3415e6ccafaeSMatthew G Knepley { 3416e6ccafaeSMatthew G Knepley PetscSection coordSection, subCoordSection; 3417e6ccafaeSMatthew G Knepley Vec coordinates, subCoordinates; 3418e6ccafaeSMatthew G Knepley PetscScalar *coords, *subCoords; 3419c0e8cf5fSMatthew G. Knepley PetscInt cdim, numComp, coordSize; 342024640c55SToby Isaac const char *name; 3421e6ccafaeSMatthew G Knepley 34229566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDim(dm, &cdim)); 34239566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateSection(dm, &coordSection)); 34249566063dSJacob Faibussowitsch PetscCall(DMGetCoordinatesLocal(dm, &coordinates)); 34259566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateSection(subdm, &subCoordSection)); 34269566063dSJacob Faibussowitsch PetscCall(PetscSectionSetNumFields(subCoordSection, 1)); 34279566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldComponents(coordSection, 0, &numComp)); 34289566063dSJacob Faibussowitsch PetscCall(PetscSectionSetFieldComponents(subCoordSection, 0, numComp)); 34299566063dSJacob Faibussowitsch PetscCall(PetscSectionSetChart(subCoordSection, firstSubPoint[0], firstSubPoint[0] + numSubPoints[0])); 3430e6ccafaeSMatthew G Knepley for (v = 0; v < numSubPoints[0]; ++v) { 3431e6ccafaeSMatthew G Knepley const PetscInt vertex = subpoints[0][v]; 3432e6ccafaeSMatthew G Knepley const PetscInt subvertex = firstSubPoint[0] + v; 3433e6ccafaeSMatthew G Knepley PetscInt dof; 3434e6ccafaeSMatthew G Knepley 34359566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(coordSection, vertex, &dof)); 34369566063dSJacob Faibussowitsch PetscCall(PetscSectionSetDof(subCoordSection, subvertex, dof)); 34379566063dSJacob Faibussowitsch PetscCall(PetscSectionSetFieldDof(subCoordSection, subvertex, 0, dof)); 3438e6ccafaeSMatthew G Knepley } 34399566063dSJacob Faibussowitsch PetscCall(PetscSectionSetUp(subCoordSection)); 34409566063dSJacob Faibussowitsch PetscCall(PetscSectionGetStorageSize(subCoordSection, &coordSize)); 34419566063dSJacob Faibussowitsch PetscCall(VecCreate(PETSC_COMM_SELF, &subCoordinates)); 34429566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)coordinates, &name)); 34439566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)subCoordinates, name)); 34449566063dSJacob Faibussowitsch PetscCall(VecSetSizes(subCoordinates, coordSize, PETSC_DETERMINE)); 34459566063dSJacob Faibussowitsch PetscCall(VecSetBlockSize(subCoordinates, cdim)); 34469566063dSJacob Faibussowitsch PetscCall(VecSetType(subCoordinates, VECSTANDARD)); 34479566063dSJacob Faibussowitsch PetscCall(VecGetArray(coordinates, &coords)); 34489566063dSJacob Faibussowitsch PetscCall(VecGetArray(subCoordinates, &subCoords)); 3449e6ccafaeSMatthew G Knepley for (v = 0; v < numSubPoints[0]; ++v) { 3450e6ccafaeSMatthew G Knepley const PetscInt vertex = subpoints[0][v]; 3451e6ccafaeSMatthew G Knepley const PetscInt subvertex = firstSubPoint[0] + v; 3452e6ccafaeSMatthew G Knepley PetscInt dof, off, sdof, soff, d; 3453e6ccafaeSMatthew G Knepley 34549566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(coordSection, vertex, &dof)); 34559566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(coordSection, vertex, &off)); 34569566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(subCoordSection, subvertex, &sdof)); 34579566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(subCoordSection, subvertex, &soff)); 345863a3b9bcSJacob Faibussowitsch PetscCheck(dof == sdof, comm, PETSC_ERR_PLIB, "Coordinate dimension %" PetscInt_FMT " on subvertex %" PetscInt_FMT ", vertex %" PetscInt_FMT " should be %" PetscInt_FMT, sdof, subvertex, vertex, dof); 3459efa14ee0SMatthew G Knepley for (d = 0; d < dof; ++d) subCoords[soff + d] = coords[off + d]; 3460e6ccafaeSMatthew G Knepley } 34619566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(coordinates, &coords)); 34629566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(subCoordinates, &subCoords)); 34639566063dSJacob Faibussowitsch PetscCall(DMSetCoordinatesLocal(subdm, subCoordinates)); 34649566063dSJacob Faibussowitsch PetscCall(VecDestroy(&subCoordinates)); 3465e6ccafaeSMatthew G Knepley } 34663982b651SMatthew G. Knepley /* Build SF: We need this complexity because subpoints might not be selected on the owning process */ 34673982b651SMatthew G. Knepley { 34683982b651SMatthew G. Knepley PetscSF sfPoint, sfPointSub; 34693982b651SMatthew G. Knepley IS subpIS; 34703982b651SMatthew G. Knepley const PetscSFNode *remotePoints; 34715033f954SMatthew G. Knepley PetscSFNode *sremotePoints = NULL, *newLocalPoints = NULL, *newOwners = NULL; 34725033f954SMatthew G. Knepley const PetscInt *localPoints, *subpoints, *rootdegree; 3473dd05d810SMatthew G. Knepley PetscInt *slocalPoints = NULL, *sortedPoints = NULL, *sortedIndices = NULL; 34745033f954SMatthew G. Knepley PetscInt numRoots, numLeaves, numSubpoints = 0, numSubroots, numSubleaves = 0, l, sl = 0, ll = 0, pStart, pEnd, p; 34755033f954SMatthew G. Knepley PetscMPIInt rank, size; 34763982b651SMatthew G. Knepley 34779566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)dm), &rank)); 34785033f954SMatthew G. Knepley PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)dm), &size)); 34799566063dSJacob Faibussowitsch PetscCall(DMGetPointSF(dm, &sfPoint)); 34809566063dSJacob Faibussowitsch PetscCall(DMGetPointSF(subdm, &sfPointSub)); 34819566063dSJacob Faibussowitsch PetscCall(DMPlexGetChart(dm, &pStart, &pEnd)); 34829566063dSJacob Faibussowitsch PetscCall(DMPlexGetChart(subdm, NULL, &numSubroots)); 34839566063dSJacob Faibussowitsch PetscCall(DMPlexGetSubpointIS(subdm, &subpIS)); 34843982b651SMatthew G. Knepley if (subpIS) { 3485dd05d810SMatthew G. Knepley PetscBool sorted = PETSC_TRUE; 3486dd05d810SMatthew G. Knepley 34879566063dSJacob Faibussowitsch PetscCall(ISGetIndices(subpIS, &subpoints)); 34889566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(subpIS, &numSubpoints)); 3489dd05d810SMatthew G. Knepley for (p = 1; p < numSubpoints; ++p) sorted = sorted && (subpoints[p] >= subpoints[p - 1]) ? PETSC_TRUE : PETSC_FALSE; 3490dd05d810SMatthew G. Knepley if (!sorted) { 3491dd05d810SMatthew G. Knepley PetscCall(PetscMalloc2(numSubpoints, &sortedPoints, numSubpoints, &sortedIndices)); 3492dd05d810SMatthew G. Knepley for (p = 0; p < numSubpoints; ++p) sortedIndices[p] = p; 3493dd05d810SMatthew G. Knepley PetscCall(PetscArraycpy(sortedPoints, subpoints, numSubpoints)); 3494dd05d810SMatthew G. Knepley PetscCall(PetscSortIntWithArray(numSubpoints, sortedPoints, sortedIndices)); 3495dd05d810SMatthew G. Knepley } 34963982b651SMatthew G. Knepley } 34979566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(sfPoint, &numRoots, &numLeaves, &localPoints, &remotePoints)); 34983982b651SMatthew G. Knepley if (numRoots >= 0) { 34995033f954SMatthew G. Knepley PetscCall(PetscSFComputeDegreeBegin(sfPoint, &rootdegree)); 35005033f954SMatthew G. Knepley PetscCall(PetscSFComputeDegreeEnd(sfPoint, &rootdegree)); 35019566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(pEnd - pStart, &newLocalPoints, numRoots, &newOwners)); 35023982b651SMatthew G. Knepley for (p = 0; p < pEnd - pStart; ++p) { 35033982b651SMatthew G. Knepley newLocalPoints[p].rank = -2; 35043982b651SMatthew G. Knepley newLocalPoints[p].index = -2; 35053982b651SMatthew G. Knepley } 35063982b651SMatthew G. Knepley /* Set subleaves */ 35073982b651SMatthew G. Knepley for (l = 0; l < numLeaves; ++l) { 35083982b651SMatthew G. Knepley const PetscInt point = localPoints[l]; 3509dd05d810SMatthew G. Knepley const PetscInt subpoint = DMPlexFilterPointPerm_Internal(point, 0, numSubpoints, sortedPoints ? sortedPoints : subpoints, sortedIndices); 35103982b651SMatthew G. Knepley 35113982b651SMatthew G. Knepley if (subpoint < 0) continue; 35123982b651SMatthew G. Knepley newLocalPoints[point - pStart].rank = rank; 35133982b651SMatthew G. Knepley newLocalPoints[point - pStart].index = subpoint; 35143982b651SMatthew G. Knepley ++numSubleaves; 35153982b651SMatthew G. Knepley } 35163982b651SMatthew G. Knepley /* Must put in owned subpoints */ 35173982b651SMatthew G. Knepley for (p = pStart; p < pEnd; ++p) { 35183982b651SMatthew G. Knepley newOwners[p - pStart].rank = -3; 35193982b651SMatthew G. Knepley newOwners[p - pStart].index = -3; 35203982b651SMatthew G. Knepley } 3521d9384f27SMatthew G. Knepley for (p = 0; p < numSubpoints; ++p) { 35225033f954SMatthew G. Knepley /* Hold on to currently owned points */ 35235033f954SMatthew G. Knepley if (rootdegree[subpoints[p] - pStart]) newOwners[subpoints[p] - pStart].rank = rank + size; 35245033f954SMatthew G. Knepley else newOwners[subpoints[p] - pStart].rank = rank; 3525d9384f27SMatthew G. Knepley newOwners[subpoints[p] - pStart].index = p; 35263982b651SMatthew G. Knepley } 35279566063dSJacob Faibussowitsch PetscCall(PetscSFReduceBegin(sfPoint, MPIU_2INT, newLocalPoints, newOwners, MPI_MAXLOC)); 35289566063dSJacob Faibussowitsch PetscCall(PetscSFReduceEnd(sfPoint, MPIU_2INT, newLocalPoints, newOwners, MPI_MAXLOC)); 35299371c9d4SSatish Balay for (p = pStart; p < pEnd; ++p) 35309371c9d4SSatish Balay if (newOwners[p - pStart].rank >= size) newOwners[p - pStart].rank -= size; 35319566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(sfPoint, MPIU_2INT, newOwners, newLocalPoints, MPI_REPLACE)); 35329566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(sfPoint, MPIU_2INT, newOwners, newLocalPoints, MPI_REPLACE)); 35339566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(numSubleaves, &slocalPoints)); 35349566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(numSubleaves, &sremotePoints)); 35355033f954SMatthew G. Knepley for (l = 0; l < numLeaves; ++l) { 35363982b651SMatthew G. Knepley const PetscInt point = localPoints[l]; 3537dd05d810SMatthew G. Knepley const PetscInt subpoint = DMPlexFilterPointPerm_Internal(point, 0, numSubpoints, sortedPoints ? sortedPoints : subpoints, sortedIndices); 35383982b651SMatthew G. Knepley 35393982b651SMatthew G. Knepley if (subpoint < 0) continue; 35409371c9d4SSatish Balay if (newLocalPoints[point].rank == rank) { 35419371c9d4SSatish Balay ++ll; 35429371c9d4SSatish Balay continue; 35439371c9d4SSatish Balay } 35443982b651SMatthew G. Knepley slocalPoints[sl] = subpoint; 35453982b651SMatthew G. Knepley sremotePoints[sl].rank = newLocalPoints[point].rank; 35463982b651SMatthew G. Knepley sremotePoints[sl].index = newLocalPoints[point].index; 354763a3b9bcSJacob Faibussowitsch PetscCheck(sremotePoints[sl].rank >= 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid remote rank for local point %" PetscInt_FMT, point); 354863a3b9bcSJacob Faibussowitsch PetscCheck(sremotePoints[sl].index >= 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid remote subpoint for local point %" PetscInt_FMT, point); 35493982b651SMatthew G. Knepley ++sl; 35503982b651SMatthew G. Knepley } 35511dca8a05SBarry Smith PetscCheck(sl + ll == numSubleaves, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Mismatch in number of subleaves %" PetscInt_FMT " + %" PetscInt_FMT " != %" PetscInt_FMT, sl, ll, numSubleaves); 35529566063dSJacob Faibussowitsch PetscCall(PetscFree2(newLocalPoints, newOwners)); 35539566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(sfPointSub, numSubroots, sl, slocalPoints, PETSC_OWN_POINTER, sremotePoints, PETSC_OWN_POINTER)); 35543982b651SMatthew G. Knepley } 355548a46eb9SPierre Jolivet if (subpIS) PetscCall(ISRestoreIndices(subpIS, &subpoints)); 3556dd05d810SMatthew G. Knepley PetscCall(PetscFree2(sortedPoints, sortedIndices)); 35573982b651SMatthew G. Knepley } 3558212103e5SMatthew Knepley /* Filter labels */ 35599566063dSJacob Faibussowitsch PetscCall(DMPlexFilterLabels_Internal(dm, numSubPoints, subpoints, firstSubPoint, subdm)); 3560efa14ee0SMatthew G Knepley /* Cleanup */ 3561dd05d810SMatthew G. Knepley for (d = 0; d <= sdim; ++d) { 35629566063dSJacob Faibussowitsch if (subpointIS[d]) PetscCall(ISRestoreIndices(subpointIS[d], &subpoints[d])); 35639566063dSJacob Faibussowitsch PetscCall(ISDestroy(&subpointIS[d])); 3564e6ccafaeSMatthew G Knepley } 35659566063dSJacob Faibussowitsch PetscCall(PetscFree4(numSubPoints, firstSubPoint, subpointIS, subpoints)); 3566e6ccafaeSMatthew G Knepley PetscFunctionReturn(0); 3567e6ccafaeSMatthew G Knepley } 3568e6ccafaeSMatthew G Knepley 3569d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexCreateSubmesh_Interpolated(DM dm, DMLabel vertexLabel, PetscInt value, PetscBool markedFaces, DM subdm) 3570d71ae5a4SJacob Faibussowitsch { 35713982b651SMatthew G. Knepley PetscFunctionBegin; 35729566063dSJacob Faibussowitsch PetscCall(DMPlexCreateSubmeshGeneric_Interpolated(dm, vertexLabel, value, markedFaces, PETSC_FALSE, 1, subdm)); 35733982b651SMatthew G. Knepley PetscFunctionReturn(0); 35743982b651SMatthew G. Knepley } 35753982b651SMatthew G. Knepley 3576d0fa310fSMatthew G. Knepley /*@ 3577e6ccafaeSMatthew G Knepley DMPlexCreateSubmesh - Extract a hypersurface from the mesh using vertices defined by a label 3578e6ccafaeSMatthew G Knepley 3579e6ccafaeSMatthew G Knepley Input Parameters: 3580e6ccafaeSMatthew G Knepley + dm - The original mesh 3581158acfadSMatthew G. Knepley . vertexLabel - The DMLabel marking points contained in the surface 3582158acfadSMatthew G. Knepley . value - The label value to use 3583158acfadSMatthew G. Knepley - markedFaces - PETSC_TRUE if surface faces are marked in addition to vertices, PETSC_FALSE if only vertices are marked 3584e6ccafaeSMatthew G Knepley 3585e6ccafaeSMatthew G Knepley Output Parameter: 3586e6ccafaeSMatthew G Knepley . subdm - The surface mesh 3587e6ccafaeSMatthew G Knepley 3588e6ccafaeSMatthew G Knepley Note: This function produces a DMLabel mapping original points in the submesh to their depth. This can be obtained using DMPlexGetSubpointMap(). 3589e6ccafaeSMatthew G Knepley 3590e6ccafaeSMatthew G Knepley Level: developer 3591e6ccafaeSMatthew G Knepley 3592db781477SPatrick Sanan .seealso: `DMPlexGetSubpointMap()`, `DMGetLabel()`, `DMLabelSetValue()` 3593830e53efSMatthew G. Knepley @*/ 3594d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexCreateSubmesh(DM dm, DMLabel vertexLabel, PetscInt value, PetscBool markedFaces, DM *subdm) 3595d71ae5a4SJacob Faibussowitsch { 3596827c4036SVaclav Hapla DMPlexInterpolatedFlag interpolated; 3597827c4036SVaclav Hapla PetscInt dim, cdim; 3598e6ccafaeSMatthew G Knepley 3599e6ccafaeSMatthew G Knepley PetscFunctionBegin; 3600e6ccafaeSMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 3601064a246eSJacob Faibussowitsch PetscValidPointer(subdm, 5); 36029566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 36039566063dSJacob Faibussowitsch PetscCall(DMCreate(PetscObjectComm((PetscObject)dm), subdm)); 36049566063dSJacob Faibussowitsch PetscCall(DMSetType(*subdm, DMPLEX)); 36059566063dSJacob Faibussowitsch PetscCall(DMSetDimension(*subdm, dim - 1)); 36069566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDim(dm, &cdim)); 36079566063dSJacob Faibussowitsch PetscCall(DMSetCoordinateDim(*subdm, cdim)); 36089566063dSJacob Faibussowitsch PetscCall(DMPlexIsInterpolated(dm, &interpolated)); 360908401ef6SPierre Jolivet PetscCheck(interpolated != DMPLEX_INTERPOLATED_PARTIAL, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Not for partially interpolated meshes"); 3610827c4036SVaclav Hapla if (interpolated) { 36119566063dSJacob Faibussowitsch PetscCall(DMPlexCreateSubmesh_Interpolated(dm, vertexLabel, value, markedFaces, *subdm)); 3612e6ccafaeSMatthew G Knepley } else { 36139566063dSJacob Faibussowitsch PetscCall(DMPlexCreateSubmesh_Uninterpolated(dm, vertexLabel, value, *subdm)); 3614e6ccafaeSMatthew G Knepley } 36155de52c6dSVaclav Hapla PetscCall(DMPlexCopy_Internal(dm, PETSC_TRUE, PETSC_TRUE, *subdm)); 3616e6ccafaeSMatthew G Knepley PetscFunctionReturn(0); 3617e6ccafaeSMatthew G Knepley } 3618e6ccafaeSMatthew G Knepley 3619d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexCreateCohesiveSubmesh_Uninterpolated(DM dm, PetscBool hasLagrange, const char label[], PetscInt value, DM subdm) 3620d71ae5a4SJacob Faibussowitsch { 3621766ab985SMatthew G. Knepley MPI_Comm comm; 3622766ab985SMatthew G. Knepley DMLabel subpointMap; 3623766ab985SMatthew G. Knepley IS subvertexIS; 3624766ab985SMatthew G. Knepley const PetscInt *subVertices; 3625fed694aaSMatthew G. Knepley PetscInt numSubVertices, firstSubVertex, numSubCells, *subCells = NULL; 3626766ab985SMatthew G. Knepley PetscInt *subface, maxConeSize, numSubFaces, firstSubFace, newFacePoint, nFV; 3627412e9a14SMatthew G. Knepley PetscInt c, f; 3628766ab985SMatthew G. Knepley 3629766ab985SMatthew G. Knepley PetscFunctionBegin; 36309566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)dm, &comm)); 3631766ab985SMatthew G. Knepley /* Create subpointMap which marks the submesh */ 36329566063dSJacob Faibussowitsch PetscCall(DMLabelCreate(PETSC_COMM_SELF, "subpoint_map", &subpointMap)); 36339566063dSJacob Faibussowitsch PetscCall(DMPlexSetSubpointMap(subdm, subpointMap)); 36349566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&subpointMap)); 36359566063dSJacob Faibussowitsch PetscCall(DMPlexMarkCohesiveSubmesh_Uninterpolated(dm, hasLagrange, label, value, subpointMap, &numSubFaces, &nFV, &subCells, subdm)); 3636766ab985SMatthew G. Knepley /* Setup chart */ 36379566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumSize(subpointMap, 0, &numSubVertices)); 36389566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumSize(subpointMap, 2, &numSubCells)); 36399566063dSJacob Faibussowitsch PetscCall(DMPlexSetChart(subdm, 0, numSubCells + numSubFaces + numSubVertices)); 36409566063dSJacob Faibussowitsch PetscCall(DMPlexSetVTKCellHeight(subdm, 1)); 3641766ab985SMatthew G. Knepley /* Set cone sizes */ 3642766ab985SMatthew G. Knepley firstSubVertex = numSubCells; 3643766ab985SMatthew G. Knepley firstSubFace = numSubCells + numSubVertices; 3644766ab985SMatthew G. Knepley newFacePoint = firstSubFace; 36459566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(subpointMap, 0, &subvertexIS)); 36469566063dSJacob Faibussowitsch if (subvertexIS) PetscCall(ISGetIndices(subvertexIS, &subVertices)); 364748a46eb9SPierre Jolivet for (c = 0; c < numSubCells; ++c) PetscCall(DMPlexSetConeSize(subdm, c, 1)); 364848a46eb9SPierre Jolivet for (f = firstSubFace; f < firstSubFace + numSubFaces; ++f) PetscCall(DMPlexSetConeSize(subdm, f, nFV)); 36499566063dSJacob Faibussowitsch PetscCall(DMSetUp(subdm)); 3650766ab985SMatthew G. Knepley /* Create face cones */ 36519566063dSJacob Faibussowitsch PetscCall(DMPlexGetMaxSizes(dm, &maxConeSize, NULL)); 36529566063dSJacob Faibussowitsch PetscCall(DMGetWorkArray(subdm, maxConeSize, MPIU_INT, (void **)&subface)); 3653766ab985SMatthew G. Knepley for (c = 0; c < numSubCells; ++c) { 3654766ab985SMatthew G. Knepley const PetscInt cell = subCells[c]; 3655766ab985SMatthew G. Knepley const PetscInt subcell = c; 365687feddfdSMatthew G. Knepley const PetscInt *cone, *cells; 3657064cae4fSPierre Jolivet PetscBool isHybrid = PETSC_FALSE; 365887feddfdSMatthew G. Knepley PetscInt numCells, subVertex, p, v; 3659766ab985SMatthew G. Knepley 36609566063dSJacob Faibussowitsch PetscCall(DMPlexCellIsHybrid_Internal(dm, cell, &isHybrid)); 3661412e9a14SMatthew G. Knepley if (!isHybrid) continue; 36629566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, cell, &cone)); 366387feddfdSMatthew G. Knepley for (v = 0; v < nFV; ++v) { 36649566063dSJacob Faibussowitsch PetscCall(PetscFindInt(cone[v], numSubVertices, subVertices, &subVertex)); 366587feddfdSMatthew G. Knepley subface[v] = firstSubVertex + subVertex; 366687feddfdSMatthew G. Knepley } 36679566063dSJacob Faibussowitsch PetscCall(DMPlexSetCone(subdm, newFacePoint, subface)); 36689566063dSJacob Faibussowitsch PetscCall(DMPlexSetCone(subdm, subcell, &newFacePoint)); 36699566063dSJacob Faibussowitsch PetscCall(DMPlexGetJoin(dm, nFV, cone, &numCells, &cells)); 367027234c99SMatthew G. Knepley /* Not true in parallel 367108401ef6SPierre Jolivet PetscCheck(numCells == 2,PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Cohesive cells should separate two cells"); */ 367287feddfdSMatthew G. Knepley for (p = 0; p < numCells; ++p) { 367387feddfdSMatthew G. Knepley PetscInt negsubcell; 3674064cae4fSPierre Jolivet PetscBool isHybrid = PETSC_FALSE; 3675766ab985SMatthew G. Knepley 36769566063dSJacob Faibussowitsch PetscCall(DMPlexCellIsHybrid_Internal(dm, cells[p], &isHybrid)); 3677412e9a14SMatthew G. Knepley if (isHybrid) continue; 367887feddfdSMatthew G. Knepley /* I know this is a crap search */ 367987feddfdSMatthew G. Knepley for (negsubcell = 0; negsubcell < numSubCells; ++negsubcell) { 368087feddfdSMatthew G. Knepley if (subCells[negsubcell] == cells[p]) break; 3681766ab985SMatthew G. Knepley } 368263a3b9bcSJacob Faibussowitsch PetscCheck(negsubcell != numSubCells, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Could not find negative face neighbor for cohesive cell %" PetscInt_FMT, cell); 36839566063dSJacob Faibussowitsch PetscCall(DMPlexSetCone(subdm, negsubcell, &newFacePoint)); 3684766ab985SMatthew G. Knepley } 36859566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreJoin(dm, nFV, cone, &numCells, &cells)); 368687feddfdSMatthew G. Knepley ++newFacePoint; 3687766ab985SMatthew G. Knepley } 36889566063dSJacob Faibussowitsch PetscCall(DMRestoreWorkArray(subdm, maxConeSize, MPIU_INT, (void **)&subface)); 36899566063dSJacob Faibussowitsch PetscCall(DMPlexSymmetrize(subdm)); 36909566063dSJacob Faibussowitsch PetscCall(DMPlexStratify(subdm)); 3691766ab985SMatthew G. Knepley /* Build coordinates */ 3692766ab985SMatthew G. Knepley { 3693766ab985SMatthew G. Knepley PetscSection coordSection, subCoordSection; 3694766ab985SMatthew G. Knepley Vec coordinates, subCoordinates; 3695766ab985SMatthew G. Knepley PetscScalar *coords, *subCoords; 3696c0e8cf5fSMatthew G. Knepley PetscInt cdim, numComp, coordSize, v; 369724640c55SToby Isaac const char *name; 3698766ab985SMatthew G. Knepley 36999566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDim(dm, &cdim)); 37009566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateSection(dm, &coordSection)); 37019566063dSJacob Faibussowitsch PetscCall(DMGetCoordinatesLocal(dm, &coordinates)); 37029566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateSection(subdm, &subCoordSection)); 37039566063dSJacob Faibussowitsch PetscCall(PetscSectionSetNumFields(subCoordSection, 1)); 37049566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldComponents(coordSection, 0, &numComp)); 37059566063dSJacob Faibussowitsch PetscCall(PetscSectionSetFieldComponents(subCoordSection, 0, numComp)); 37069566063dSJacob Faibussowitsch PetscCall(PetscSectionSetChart(subCoordSection, firstSubVertex, firstSubVertex + numSubVertices)); 3707766ab985SMatthew G. Knepley for (v = 0; v < numSubVertices; ++v) { 3708766ab985SMatthew G. Knepley const PetscInt vertex = subVertices[v]; 3709766ab985SMatthew G. Knepley const PetscInt subvertex = firstSubVertex + v; 3710766ab985SMatthew G. Knepley PetscInt dof; 3711766ab985SMatthew G. Knepley 37129566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(coordSection, vertex, &dof)); 37139566063dSJacob Faibussowitsch PetscCall(PetscSectionSetDof(subCoordSection, subvertex, dof)); 37149566063dSJacob Faibussowitsch PetscCall(PetscSectionSetFieldDof(subCoordSection, subvertex, 0, dof)); 3715766ab985SMatthew G. Knepley } 37169566063dSJacob Faibussowitsch PetscCall(PetscSectionSetUp(subCoordSection)); 37179566063dSJacob Faibussowitsch PetscCall(PetscSectionGetStorageSize(subCoordSection, &coordSize)); 37189566063dSJacob Faibussowitsch PetscCall(VecCreate(PETSC_COMM_SELF, &subCoordinates)); 37199566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)coordinates, &name)); 37209566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)subCoordinates, name)); 37219566063dSJacob Faibussowitsch PetscCall(VecSetSizes(subCoordinates, coordSize, PETSC_DETERMINE)); 37229566063dSJacob Faibussowitsch PetscCall(VecSetBlockSize(subCoordinates, cdim)); 37239566063dSJacob Faibussowitsch PetscCall(VecSetType(subCoordinates, VECSTANDARD)); 37249566063dSJacob Faibussowitsch PetscCall(VecGetArray(coordinates, &coords)); 37259566063dSJacob Faibussowitsch PetscCall(VecGetArray(subCoordinates, &subCoords)); 3726766ab985SMatthew G. Knepley for (v = 0; v < numSubVertices; ++v) { 3727766ab985SMatthew G. Knepley const PetscInt vertex = subVertices[v]; 3728766ab985SMatthew G. Knepley const PetscInt subvertex = firstSubVertex + v; 3729766ab985SMatthew G. Knepley PetscInt dof, off, sdof, soff, d; 3730766ab985SMatthew G. Knepley 37319566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(coordSection, vertex, &dof)); 37329566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(coordSection, vertex, &off)); 37339566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(subCoordSection, subvertex, &sdof)); 37349566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(subCoordSection, subvertex, &soff)); 373563a3b9bcSJacob Faibussowitsch PetscCheck(dof == sdof, comm, PETSC_ERR_PLIB, "Coordinate dimension %" PetscInt_FMT " on subvertex %" PetscInt_FMT ", vertex %" PetscInt_FMT " should be %" PetscInt_FMT, sdof, subvertex, vertex, dof); 3736766ab985SMatthew G. Knepley for (d = 0; d < dof; ++d) subCoords[soff + d] = coords[off + d]; 3737766ab985SMatthew G. Knepley } 37389566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(coordinates, &coords)); 37399566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(subCoordinates, &subCoords)); 37409566063dSJacob Faibussowitsch PetscCall(DMSetCoordinatesLocal(subdm, subCoordinates)); 37419566063dSJacob Faibussowitsch PetscCall(VecDestroy(&subCoordinates)); 3742766ab985SMatthew G. Knepley } 3743aca35d17SMatthew G. Knepley /* Build SF */ 3744aca35d17SMatthew G. Knepley CHKMEMQ; 3745aca35d17SMatthew G. Knepley { 3746aca35d17SMatthew G. Knepley PetscSF sfPoint, sfPointSub; 3747aca35d17SMatthew G. Knepley const PetscSFNode *remotePoints; 3748bdcf2095SMatthew G. Knepley PetscSFNode *sremotePoints, *newLocalPoints, *newOwners; 3749aca35d17SMatthew G. Knepley const PetscInt *localPoints; 3750bdcf2095SMatthew G. Knepley PetscInt *slocalPoints; 375149c26ae4SMatthew G. Knepley PetscInt numRoots, numLeaves, numSubRoots = numSubCells + numSubFaces + numSubVertices, numSubLeaves = 0, l, sl, ll, pStart, pEnd, p, vStart, vEnd; 3752bdcf2095SMatthew G. Knepley PetscMPIInt rank; 3753aca35d17SMatthew G. Knepley 37549566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)dm), &rank)); 37559566063dSJacob Faibussowitsch PetscCall(DMGetPointSF(dm, &sfPoint)); 37569566063dSJacob Faibussowitsch PetscCall(DMGetPointSF(subdm, &sfPointSub)); 37579566063dSJacob Faibussowitsch PetscCall(DMPlexGetChart(dm, &pStart, &pEnd)); 37589566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthStratum(dm, 0, &vStart, &vEnd)); 37599566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(sfPoint, &numRoots, &numLeaves, &localPoints, &remotePoints)); 3760aca35d17SMatthew G. Knepley if (numRoots >= 0) { 3761aca35d17SMatthew G. Knepley /* Only vertices should be shared */ 37629566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(pEnd - pStart, &newLocalPoints, numRoots, &newOwners)); 3763bdcf2095SMatthew G. Knepley for (p = 0; p < pEnd - pStart; ++p) { 3764bdcf2095SMatthew G. Knepley newLocalPoints[p].rank = -2; 3765bdcf2095SMatthew G. Knepley newLocalPoints[p].index = -2; 3766bdcf2095SMatthew G. Knepley } 37679e0823b2SMatthew G. Knepley /* Set subleaves */ 3768aca35d17SMatthew G. Knepley for (l = 0; l < numLeaves; ++l) { 3769aca35d17SMatthew G. Knepley const PetscInt point = localPoints[l]; 3770bdcf2095SMatthew G. Knepley const PetscInt subPoint = DMPlexFilterPoint_Internal(point, firstSubVertex, numSubVertices, subVertices); 3771aca35d17SMatthew G. Knepley 377263a3b9bcSJacob Faibussowitsch PetscCheck(!(point < vStart) || !(point >= vEnd), PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Should not be mapping anything but vertices, %" PetscInt_FMT, point); 3773bdcf2095SMatthew G. Knepley if (subPoint < 0) continue; 3774bdcf2095SMatthew G. Knepley newLocalPoints[point - pStart].rank = rank; 3775bdcf2095SMatthew G. Knepley newLocalPoints[point - pStart].index = subPoint; 3776bdcf2095SMatthew G. Knepley ++numSubLeaves; 3777aca35d17SMatthew G. Knepley } 37789e0823b2SMatthew G. Knepley /* Must put in owned subpoints */ 37799e0823b2SMatthew G. Knepley for (p = pStart; p < pEnd; ++p) { 37809e0823b2SMatthew G. Knepley const PetscInt subPoint = DMPlexFilterPoint_Internal(p, firstSubVertex, numSubVertices, subVertices); 37819e0823b2SMatthew G. Knepley 37829e0823b2SMatthew G. Knepley if (subPoint < 0) { 37839e0823b2SMatthew G. Knepley newOwners[p - pStart].rank = -3; 37849e0823b2SMatthew G. Knepley newOwners[p - pStart].index = -3; 37859e0823b2SMatthew G. Knepley } else { 37869e0823b2SMatthew G. Knepley newOwners[p - pStart].rank = rank; 37879e0823b2SMatthew G. Knepley newOwners[p - pStart].index = subPoint; 37889e0823b2SMatthew G. Knepley } 3789bdcf2095SMatthew G. Knepley } 37909566063dSJacob Faibussowitsch PetscCall(PetscSFReduceBegin(sfPoint, MPIU_2INT, newLocalPoints, newOwners, MPI_MAXLOC)); 37919566063dSJacob Faibussowitsch PetscCall(PetscSFReduceEnd(sfPoint, MPIU_2INT, newLocalPoints, newOwners, MPI_MAXLOC)); 37929566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(sfPoint, MPIU_2INT, newOwners, newLocalPoints, MPI_REPLACE)); 37939566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(sfPoint, MPIU_2INT, newOwners, newLocalPoints, MPI_REPLACE)); 37949566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(numSubLeaves, &slocalPoints)); 37959566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(numSubLeaves, &sremotePoints)); 379649c26ae4SMatthew G. Knepley for (l = 0, sl = 0, ll = 0; l < numLeaves; ++l) { 3797bdcf2095SMatthew G. Knepley const PetscInt point = localPoints[l]; 3798bdcf2095SMatthew G. Knepley const PetscInt subPoint = DMPlexFilterPoint_Internal(point, firstSubVertex, numSubVertices, subVertices); 3799aca35d17SMatthew G. Knepley 3800aca35d17SMatthew G. Knepley if (subPoint < 0) continue; 38019371c9d4SSatish Balay if (newLocalPoints[point].rank == rank) { 38029371c9d4SSatish Balay ++ll; 38039371c9d4SSatish Balay continue; 38049371c9d4SSatish Balay } 3805aca35d17SMatthew G. Knepley slocalPoints[sl] = subPoint; 3806bdcf2095SMatthew G. Knepley sremotePoints[sl].rank = newLocalPoints[point].rank; 3807bdcf2095SMatthew G. Knepley sremotePoints[sl].index = newLocalPoints[point].index; 380863a3b9bcSJacob Faibussowitsch PetscCheck(sremotePoints[sl].rank >= 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid remote rank for local point %" PetscInt_FMT, point); 380963a3b9bcSJacob Faibussowitsch PetscCheck(sremotePoints[sl].index >= 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid remote subpoint for local point %" PetscInt_FMT, point); 3810aca35d17SMatthew G. Knepley ++sl; 3811aca35d17SMatthew G. Knepley } 38129566063dSJacob Faibussowitsch PetscCall(PetscFree2(newLocalPoints, newOwners)); 38131dca8a05SBarry Smith PetscCheck(sl + ll == numSubLeaves, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Mismatch in number of subleaves %" PetscInt_FMT " + %" PetscInt_FMT " != %" PetscInt_FMT, sl, ll, numSubLeaves); 38149566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(sfPointSub, numSubRoots, sl, slocalPoints, PETSC_OWN_POINTER, sremotePoints, PETSC_OWN_POINTER)); 3815aca35d17SMatthew G. Knepley } 3816aca35d17SMatthew G. Knepley } 3817aca35d17SMatthew G. Knepley CHKMEMQ; 3818766ab985SMatthew G. Knepley /* Cleanup */ 38199566063dSJacob Faibussowitsch if (subvertexIS) PetscCall(ISRestoreIndices(subvertexIS, &subVertices)); 38209566063dSJacob Faibussowitsch PetscCall(ISDestroy(&subvertexIS)); 38219566063dSJacob Faibussowitsch PetscCall(PetscFree(subCells)); 3822766ab985SMatthew G. Knepley PetscFunctionReturn(0); 3823766ab985SMatthew G. Knepley } 3824766ab985SMatthew G. Knepley 3825d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexCreateCohesiveSubmesh_Interpolated(DM dm, const char labelname[], PetscInt value, DM subdm) 3826d71ae5a4SJacob Faibussowitsch { 38273982b651SMatthew G. Knepley DMLabel label = NULL; 3828766ab985SMatthew G. Knepley 3829766ab985SMatthew G. Knepley PetscFunctionBegin; 38309566063dSJacob Faibussowitsch if (labelname) PetscCall(DMGetLabel(dm, labelname, &label)); 38319566063dSJacob Faibussowitsch PetscCall(DMPlexCreateSubmeshGeneric_Interpolated(dm, label, value, PETSC_FALSE, PETSC_TRUE, 1, subdm)); 3832766ab985SMatthew G. Knepley PetscFunctionReturn(0); 3833766ab985SMatthew G. Knepley } 3834766ab985SMatthew G. Knepley 3835c08575a3SMatthew G. Knepley /*@C 38367d2fefb6SMatthew G. Knepley DMPlexCreateCohesiveSubmesh - Extract from a mesh with cohesive cells the hypersurface defined by one face of the cells. Optionally, a Label can be given to restrict the cells. 3837766ab985SMatthew G. Knepley 3838766ab985SMatthew G. Knepley Input Parameters: 3839766ab985SMatthew G. Knepley + dm - The original mesh 384027c04023SMatthew G. Knepley . hasLagrange - The mesh has Lagrange unknowns in the cohesive cells 38417afc1a8bSJed Brown . label - A label name, or NULL 384227c04023SMatthew G. Knepley - value - A label value 3843766ab985SMatthew G. Knepley 3844766ab985SMatthew G. Knepley Output Parameter: 3845766ab985SMatthew G. Knepley . subdm - The surface mesh 3846766ab985SMatthew G. Knepley 3847766ab985SMatthew G. Knepley Note: This function produces a DMLabel mapping original points in the submesh to their depth. This can be obtained using DMPlexGetSubpointMap(). 3848766ab985SMatthew G. Knepley 3849766ab985SMatthew G. Knepley Level: developer 3850766ab985SMatthew G. Knepley 3851db781477SPatrick Sanan .seealso: `DMPlexGetSubpointMap()`, `DMPlexCreateSubmesh()` 3852c08575a3SMatthew G. Knepley @*/ 3853d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexCreateCohesiveSubmesh(DM dm, PetscBool hasLagrange, const char label[], PetscInt value, DM *subdm) 3854d71ae5a4SJacob Faibussowitsch { 3855c0e8cf5fSMatthew G. Knepley PetscInt dim, cdim, depth; 3856766ab985SMatthew G. Knepley 3857766ab985SMatthew G. Knepley PetscFunctionBegin; 3858766ab985SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 385927c04023SMatthew G. Knepley PetscValidPointer(subdm, 5); 38609566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 38619566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepth(dm, &depth)); 38629566063dSJacob Faibussowitsch PetscCall(DMCreate(PetscObjectComm((PetscObject)dm), subdm)); 38639566063dSJacob Faibussowitsch PetscCall(DMSetType(*subdm, DMPLEX)); 38649566063dSJacob Faibussowitsch PetscCall(DMSetDimension(*subdm, dim - 1)); 38659566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDim(dm, &cdim)); 38669566063dSJacob Faibussowitsch PetscCall(DMSetCoordinateDim(*subdm, cdim)); 3867766ab985SMatthew G. Knepley if (depth == dim) { 38689566063dSJacob Faibussowitsch PetscCall(DMPlexCreateCohesiveSubmesh_Interpolated(dm, label, value, *subdm)); 3869766ab985SMatthew G. Knepley } else { 38709566063dSJacob Faibussowitsch PetscCall(DMPlexCreateCohesiveSubmesh_Uninterpolated(dm, hasLagrange, label, value, *subdm)); 3871e6ccafaeSMatthew G Knepley } 38725de52c6dSVaclav Hapla PetscCall(DMPlexCopy_Internal(dm, PETSC_TRUE, PETSC_TRUE, *subdm)); 3873e6ccafaeSMatthew G Knepley PetscFunctionReturn(0); 3874e6ccafaeSMatthew G Knepley } 3875e6ccafaeSMatthew G Knepley 3876bec263e5SMatthew G. Knepley /*@ 3877bec263e5SMatthew G. Knepley DMPlexFilter - Extract a subset of mesh cells defined by a label as a separate mesh 3878bec263e5SMatthew G. Knepley 3879bec263e5SMatthew G. Knepley Input Parameters: 3880bec263e5SMatthew G. Knepley + dm - The original mesh 3881bec263e5SMatthew G. Knepley . cellLabel - The DMLabel marking cells contained in the new mesh 3882bec263e5SMatthew G. Knepley - value - The label value to use 3883bec263e5SMatthew G. Knepley 3884bec263e5SMatthew G. Knepley Output Parameter: 3885bec263e5SMatthew G. Knepley . subdm - The new mesh 3886bec263e5SMatthew G. Knepley 3887dd05d810SMatthew G. Knepley Notes: 3888dd05d810SMatthew G. Knepley This function produces a `DMLabel` mapping original points in the submesh to their depth. This can be obtained using `DMPlexGetSubpointMap()`. 3889bec263e5SMatthew G. Knepley 3890bec263e5SMatthew G. Knepley Level: developer 3891bec263e5SMatthew G. Knepley 3892dd05d810SMatthew G. Knepley .seealso: `DMPlexGetSubpointMap()`, `DMGetLabel()`, `DMLabelSetValue()`, `DMPlexCreateSubmesh()` 3893bec263e5SMatthew G. Knepley @*/ 3894d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexFilter(DM dm, DMLabel cellLabel, PetscInt value, DM *subdm) 3895d71ae5a4SJacob Faibussowitsch { 3896b47cd10cSMatthew G. Knepley PetscInt dim, overlap; 3897bec263e5SMatthew G. Knepley 3898bec263e5SMatthew G. Knepley PetscFunctionBegin; 3899bec263e5SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 3900064a246eSJacob Faibussowitsch PetscValidPointer(subdm, 4); 39019566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 39029566063dSJacob Faibussowitsch PetscCall(DMCreate(PetscObjectComm((PetscObject)dm), subdm)); 39039566063dSJacob Faibussowitsch PetscCall(DMSetType(*subdm, DMPLEX)); 3904bec263e5SMatthew G. Knepley /* Extract submesh in place, could be empty on some procs, could have inconsistency if procs do not both extract a shared cell */ 39059566063dSJacob Faibussowitsch PetscCall(DMPlexCreateSubmeshGeneric_Interpolated(dm, cellLabel, value, PETSC_FALSE, PETSC_FALSE, 0, *subdm)); 39065de52c6dSVaclav Hapla PetscCall(DMPlexCopy_Internal(dm, PETSC_TRUE, PETSC_TRUE, *subdm)); 3907b47cd10cSMatthew G. Knepley // It is possible to obtain a surface mesh where some faces are in SF 3908b47cd10cSMatthew G. Knepley // We should either mark the mesh as having an overlap, or delete these from the SF 3909b47cd10cSMatthew G. Knepley PetscCall(DMPlexGetOverlap(dm, &overlap)); 3910b47cd10cSMatthew G. Knepley if (!overlap) { 3911b47cd10cSMatthew G. Knepley PetscSF sf; 3912b47cd10cSMatthew G. Knepley const PetscInt *leaves; 3913b47cd10cSMatthew G. Knepley PetscInt cStart, cEnd, Nl; 3914b47cd10cSMatthew G. Knepley PetscBool hasSubcell = PETSC_FALSE, ghasSubcell; 3915b47cd10cSMatthew G. Knepley 3916b47cd10cSMatthew G. Knepley PetscCall(DMPlexGetHeightStratum(*subdm, 0, &cStart, &cEnd)); 3917b47cd10cSMatthew G. Knepley PetscCall(DMGetPointSF(*subdm, &sf)); 3918b47cd10cSMatthew G. Knepley PetscCall(PetscSFGetGraph(sf, NULL, &Nl, &leaves, NULL)); 3919b47cd10cSMatthew G. Knepley for (PetscInt l = 0; l < Nl; ++l) { 3920b47cd10cSMatthew G. Knepley const PetscInt point = leaves ? leaves[l] : l; 3921b47cd10cSMatthew G. Knepley 3922b47cd10cSMatthew G. Knepley if (point >= cStart && point < cEnd) { 3923b47cd10cSMatthew G. Knepley hasSubcell = PETSC_TRUE; 3924b47cd10cSMatthew G. Knepley break; 3925b47cd10cSMatthew G. Knepley } 3926b47cd10cSMatthew G. Knepley } 3927b47cd10cSMatthew G. Knepley PetscCall(MPIU_Allreduce(&hasSubcell, &ghasSubcell, 1, MPIU_BOOL, MPI_LOR, PetscObjectComm((PetscObject)dm))); 3928b47cd10cSMatthew G. Knepley if (ghasSubcell) PetscCall(DMPlexSetOverlap(*subdm, NULL, 1)); 3929b47cd10cSMatthew G. Knepley } 3930bec263e5SMatthew G. Knepley PetscFunctionReturn(0); 3931bec263e5SMatthew G. Knepley } 3932bec263e5SMatthew G. Knepley 393364beef6dSMatthew G. Knepley /*@ 393464beef6dSMatthew G. Knepley DMPlexGetSubpointMap - Returns a DMLabel with point dimension as values 393564beef6dSMatthew G. Knepley 393664beef6dSMatthew G. Knepley Input Parameter: 393764beef6dSMatthew G. Knepley . dm - The submesh DM 393864beef6dSMatthew G. Knepley 393964beef6dSMatthew G. Knepley Output Parameter: 394064beef6dSMatthew G. Knepley . subpointMap - The DMLabel of all the points from the original mesh in this submesh, or NULL if this is not a submesh 394164beef6dSMatthew G. Knepley 394264beef6dSMatthew G. Knepley Level: developer 394364beef6dSMatthew G. Knepley 3944db781477SPatrick Sanan .seealso: `DMPlexCreateSubmesh()`, `DMPlexGetSubpointIS()` 394564beef6dSMatthew G. Knepley @*/ 3946d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexGetSubpointMap(DM dm, DMLabel *subpointMap) 3947d71ae5a4SJacob Faibussowitsch { 3948e6ccafaeSMatthew G Knepley PetscFunctionBegin; 3949e6ccafaeSMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 3950e6ccafaeSMatthew G Knepley PetscValidPointer(subpointMap, 2); 395165663942SMatthew G. Knepley *subpointMap = ((DM_Plex *)dm->data)->subpointMap; 3952e6ccafaeSMatthew G Knepley PetscFunctionReturn(0); 3953e6ccafaeSMatthew G Knepley } 3954e6ccafaeSMatthew G Knepley 3955c08575a3SMatthew G. Knepley /*@ 3956c08575a3SMatthew G. Knepley DMPlexSetSubpointMap - Sets the DMLabel with point dimension as values 3957c08575a3SMatthew G. Knepley 3958c08575a3SMatthew G. Knepley Input Parameters: 3959c08575a3SMatthew G. Knepley + dm - The submesh DM 3960c08575a3SMatthew G. Knepley - subpointMap - The DMLabel of all the points from the original mesh in this submesh 3961c08575a3SMatthew G. Knepley 3962c08575a3SMatthew G. Knepley Note: Should normally not be called by the user, since it is set in DMPlexCreateSubmesh() 3963c08575a3SMatthew G. Knepley 3964c08575a3SMatthew G. Knepley Level: developer 3965c08575a3SMatthew G. Knepley 3966db781477SPatrick Sanan .seealso: `DMPlexCreateSubmesh()`, `DMPlexGetSubpointIS()` 3967c08575a3SMatthew G. Knepley @*/ 3968d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexSetSubpointMap(DM dm, DMLabel subpointMap) 3969d71ae5a4SJacob Faibussowitsch { 3970e6ccafaeSMatthew G Knepley DM_Plex *mesh = (DM_Plex *)dm->data; 3971285d324eSMatthew G. Knepley DMLabel tmp; 3972e6ccafaeSMatthew G Knepley 3973e6ccafaeSMatthew G Knepley PetscFunctionBegin; 3974e6ccafaeSMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 3975285d324eSMatthew G. Knepley tmp = mesh->subpointMap; 3976e6ccafaeSMatthew G Knepley mesh->subpointMap = subpointMap; 39779566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)mesh->subpointMap)); 39789566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&tmp)); 3979e6ccafaeSMatthew G Knepley PetscFunctionReturn(0); 3980e6ccafaeSMatthew G Knepley } 3981e6ccafaeSMatthew G Knepley 3982d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexCreateSubpointIS_Internal(DM dm, IS *subpointIS) 3983d71ae5a4SJacob Faibussowitsch { 398497d8846cSMatthew Knepley DMLabel spmap; 398597d8846cSMatthew Knepley PetscInt depth, d; 398697d8846cSMatthew Knepley 398797d8846cSMatthew Knepley PetscFunctionBegin; 39889566063dSJacob Faibussowitsch PetscCall(DMPlexGetSubpointMap(dm, &spmap)); 39899566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepth(dm, &depth)); 399097d8846cSMatthew Knepley if (spmap && depth >= 0) { 399197d8846cSMatthew Knepley DM_Plex *mesh = (DM_Plex *)dm->data; 399297d8846cSMatthew Knepley PetscInt *points, *depths; 399397d8846cSMatthew Knepley PetscInt pStart, pEnd, p, off; 399497d8846cSMatthew Knepley 39959566063dSJacob Faibussowitsch PetscCall(DMPlexGetChart(dm, &pStart, &pEnd)); 399663a3b9bcSJacob Faibussowitsch PetscCheck(!pStart, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Submeshes must start the point numbering at 0, not %" PetscInt_FMT, pStart); 39979566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(pEnd, &points)); 39989566063dSJacob Faibussowitsch PetscCall(DMGetWorkArray(dm, depth + 1, MPIU_INT, &depths)); 399997d8846cSMatthew Knepley depths[0] = depth; 400097d8846cSMatthew Knepley depths[1] = 0; 4001ad540459SPierre Jolivet for (d = 2; d <= depth; ++d) depths[d] = depth + 1 - d; 400297d8846cSMatthew Knepley for (d = 0, off = 0; d <= depth; ++d) { 400397d8846cSMatthew Knepley const PetscInt dep = depths[d]; 400497d8846cSMatthew Knepley PetscInt depStart, depEnd, n; 400597d8846cSMatthew Knepley 40069566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthStratum(dm, dep, &depStart, &depEnd)); 40079566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumSize(spmap, dep, &n)); 400897d8846cSMatthew Knepley if (((d < 2) && (depth > 1)) || (d == 1)) { /* Only check vertices and cells for now since the map is broken for others */ 400963a3b9bcSJacob Faibussowitsch PetscCheck(n == depEnd - depStart, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "The number of mapped submesh points %" PetscInt_FMT " at depth %" PetscInt_FMT " should be %" PetscInt_FMT, n, dep, depEnd - depStart); 401097d8846cSMatthew Knepley } else { 401197d8846cSMatthew Knepley if (!n) { 401297d8846cSMatthew Knepley if (d == 0) { 401397d8846cSMatthew Knepley /* Missing cells */ 401497d8846cSMatthew Knepley for (p = 0; p < depEnd - depStart; ++p, ++off) points[off] = -1; 401597d8846cSMatthew Knepley } else { 401697d8846cSMatthew Knepley /* Missing faces */ 401797d8846cSMatthew Knepley for (p = 0; p < depEnd - depStart; ++p, ++off) points[off] = PETSC_MAX_INT; 401897d8846cSMatthew Knepley } 401997d8846cSMatthew Knepley } 402097d8846cSMatthew Knepley } 402197d8846cSMatthew Knepley if (n) { 402297d8846cSMatthew Knepley IS is; 402397d8846cSMatthew Knepley const PetscInt *opoints; 402497d8846cSMatthew Knepley 40259566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(spmap, dep, &is)); 40269566063dSJacob Faibussowitsch PetscCall(ISGetIndices(is, &opoints)); 402797d8846cSMatthew Knepley for (p = 0; p < n; ++p, ++off) points[off] = opoints[p]; 40289566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(is, &opoints)); 40299566063dSJacob Faibussowitsch PetscCall(ISDestroy(&is)); 403097d8846cSMatthew Knepley } 403197d8846cSMatthew Knepley } 40329566063dSJacob Faibussowitsch PetscCall(DMRestoreWorkArray(dm, depth + 1, MPIU_INT, &depths)); 403363a3b9bcSJacob Faibussowitsch PetscCheck(off == pEnd, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "The number of mapped submesh points %" PetscInt_FMT " should be %" PetscInt_FMT, off, pEnd); 40349566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, pEnd, points, PETSC_OWN_POINTER, subpointIS)); 40359566063dSJacob Faibussowitsch PetscCall(PetscObjectStateGet((PetscObject)spmap, &mesh->subpointState)); 403697d8846cSMatthew Knepley } 403797d8846cSMatthew Knepley PetscFunctionReturn(0); 403897d8846cSMatthew Knepley } 403997d8846cSMatthew Knepley 404064beef6dSMatthew G. Knepley /*@ 404197d8846cSMatthew Knepley DMPlexGetSubpointIS - Returns an IS covering the entire subdm chart with the original points as data 4042e6ccafaeSMatthew G Knepley 4043e6ccafaeSMatthew G Knepley Input Parameter: 4044e6ccafaeSMatthew G Knepley . dm - The submesh DM 4045e6ccafaeSMatthew G Knepley 4046e6ccafaeSMatthew G Knepley Output Parameter: 40470298fd71SBarry Smith . subpointIS - The IS of all the points from the original mesh in this submesh, or NULL if this is not a submesh 4048e6ccafaeSMatthew G Knepley 40493982b651SMatthew G. Knepley Note: This IS is guaranteed to be sorted by the construction of the submesh 405064beef6dSMatthew G. Knepley 405164beef6dSMatthew G. Knepley Level: developer 405264beef6dSMatthew G. Knepley 4053db781477SPatrick Sanan .seealso: `DMPlexCreateSubmesh()`, `DMPlexGetSubpointMap()` 405464beef6dSMatthew G. Knepley @*/ 4055d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexGetSubpointIS(DM dm, IS *subpointIS) 4056d71ae5a4SJacob Faibussowitsch { 405797d8846cSMatthew Knepley DM_Plex *mesh = (DM_Plex *)dm->data; 405897d8846cSMatthew Knepley DMLabel spmap; 405997d8846cSMatthew Knepley PetscObjectState state; 4060e6ccafaeSMatthew G Knepley 4061e6ccafaeSMatthew G Knepley PetscFunctionBegin; 4062e6ccafaeSMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 4063e6ccafaeSMatthew G Knepley PetscValidPointer(subpointIS, 2); 40649566063dSJacob Faibussowitsch PetscCall(DMPlexGetSubpointMap(dm, &spmap)); 40659566063dSJacob Faibussowitsch PetscCall(PetscObjectStateGet((PetscObject)spmap, &state)); 40669566063dSJacob Faibussowitsch if (state != mesh->subpointState || !mesh->subpointIS) PetscCall(DMPlexCreateSubpointIS_Internal(dm, &mesh->subpointIS)); 406797d8846cSMatthew Knepley *subpointIS = mesh->subpointIS; 4068e6ccafaeSMatthew G Knepley PetscFunctionReturn(0); 4069e6ccafaeSMatthew G Knepley } 4070559a1558SMatthew G. Knepley 4071559a1558SMatthew G. Knepley /*@ 4072a6e0b375SMatthew G. Knepley DMGetEnclosureRelation - Get the relationship between dmA and dmB 4073559a1558SMatthew G. Knepley 4074559a1558SMatthew G. Knepley Input Parameters: 4075a6e0b375SMatthew G. Knepley + dmA - The first DM 4076a6e0b375SMatthew G. Knepley - dmB - The second DM 4077559a1558SMatthew G. Knepley 4078559a1558SMatthew G. Knepley Output Parameter: 4079a6e0b375SMatthew G. Knepley . rel - The relation of dmA to dmB 4080559a1558SMatthew G. Knepley 4081a6e0b375SMatthew G. Knepley Level: intermediate 4082559a1558SMatthew G. Knepley 4083db781477SPatrick Sanan .seealso: `DMGetEnclosurePoint()` 4084559a1558SMatthew G. Knepley @*/ 4085d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetEnclosureRelation(DM dmA, DM dmB, DMEnclosureType *rel) 4086d71ae5a4SJacob Faibussowitsch { 4087a6e0b375SMatthew G. Knepley DM plexA, plexB, sdm; 4088559a1558SMatthew G. Knepley DMLabel spmap; 4089a6e0b375SMatthew G. Knepley PetscInt pStartA, pEndA, pStartB, pEndB, NpA, NpB; 4090559a1558SMatthew G. Knepley 409144171101SMatthew G. Knepley PetscFunctionBegin; 4092a6e0b375SMatthew G. Knepley PetscValidPointer(rel, 3); 4093a6e0b375SMatthew G. Knepley *rel = DM_ENC_NONE; 4094a6e0b375SMatthew G. Knepley if (!dmA || !dmB) PetscFunctionReturn(0); 4095a6e0b375SMatthew G. Knepley PetscValidHeaderSpecific(dmA, DM_CLASSID, 1); 4096064a246eSJacob Faibussowitsch PetscValidHeaderSpecific(dmB, DM_CLASSID, 2); 40979371c9d4SSatish Balay if (dmA == dmB) { 40989371c9d4SSatish Balay *rel = DM_ENC_EQUALITY; 40999371c9d4SSatish Balay PetscFunctionReturn(0); 41009371c9d4SSatish Balay } 41019566063dSJacob Faibussowitsch PetscCall(DMConvert(dmA, DMPLEX, &plexA)); 41029566063dSJacob Faibussowitsch PetscCall(DMConvert(dmB, DMPLEX, &plexB)); 41039566063dSJacob Faibussowitsch PetscCall(DMPlexGetChart(plexA, &pStartA, &pEndA)); 41049566063dSJacob Faibussowitsch PetscCall(DMPlexGetChart(plexB, &pStartB, &pEndB)); 4105a6e0b375SMatthew G. Knepley /* Assumption 1: subDMs have smaller charts than the DMs that they originate from 4106a6e0b375SMatthew G. Knepley - The degenerate case of a subdomain which includes all of the domain on some process can be treated as equality */ 4107a6e0b375SMatthew G. Knepley if ((pStartA == pStartB) && (pEndA == pEndB)) { 4108a6e0b375SMatthew G. Knepley *rel = DM_ENC_EQUALITY; 4109a6e0b375SMatthew G. Knepley goto end; 4110559a1558SMatthew G. Knepley } 4111a6e0b375SMatthew G. Knepley NpA = pEndA - pStartA; 4112a6e0b375SMatthew G. Knepley NpB = pEndB - pStartB; 4113a6e0b375SMatthew G. Knepley if (NpA == NpB) goto end; 4114a6e0b375SMatthew G. Knepley sdm = NpA > NpB ? plexB : plexA; /* The other is the original, enclosing dm */ 41159566063dSJacob Faibussowitsch PetscCall(DMPlexGetSubpointMap(sdm, &spmap)); 4116a6e0b375SMatthew G. Knepley if (!spmap) goto end; 4117a6e0b375SMatthew G. Knepley /* TODO Check the space mapped to by subpointMap is same size as dm */ 4118a6e0b375SMatthew G. Knepley if (NpA > NpB) { 4119a6e0b375SMatthew G. Knepley *rel = DM_ENC_SUPERMESH; 4120a6e0b375SMatthew G. Knepley } else { 4121a6e0b375SMatthew G. Knepley *rel = DM_ENC_SUBMESH; 4122a6e0b375SMatthew G. Knepley } 4123a6e0b375SMatthew G. Knepley end: 41249566063dSJacob Faibussowitsch PetscCall(DMDestroy(&plexA)); 41259566063dSJacob Faibussowitsch PetscCall(DMDestroy(&plexB)); 4126559a1558SMatthew G. Knepley PetscFunctionReturn(0); 4127559a1558SMatthew G. Knepley } 412844171101SMatthew G. Knepley 412944171101SMatthew G. Knepley /*@ 4130a6e0b375SMatthew G. Knepley DMGetEnclosurePoint - Get the point pA in dmA which corresponds to the point pB in dmB 413144171101SMatthew G. Knepley 413244171101SMatthew G. Knepley Input Parameters: 4133a6e0b375SMatthew G. Knepley + dmA - The first DM 4134a6e0b375SMatthew G. Knepley . dmB - The second DM 4135a6e0b375SMatthew G. Knepley . etype - The type of enclosure relation that dmA has to dmB 4136a6e0b375SMatthew G. Knepley - pB - A point of dmB 413744171101SMatthew G. Knepley 413844171101SMatthew G. Knepley Output Parameter: 4139a6e0b375SMatthew G. Knepley . pA - The corresponding point of dmA 414044171101SMatthew G. Knepley 4141a6e0b375SMatthew G. Knepley Level: intermediate 414244171101SMatthew G. Knepley 4143db781477SPatrick Sanan .seealso: `DMGetEnclosureRelation()` 414444171101SMatthew G. Knepley @*/ 4145d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetEnclosurePoint(DM dmA, DM dmB, DMEnclosureType etype, PetscInt pB, PetscInt *pA) 4146d71ae5a4SJacob Faibussowitsch { 4147a6e0b375SMatthew G. Knepley DM sdm; 4148a6e0b375SMatthew G. Knepley IS subpointIS; 4149a6e0b375SMatthew G. Knepley const PetscInt *subpoints; 4150a6e0b375SMatthew G. Knepley PetscInt numSubpoints; 415144171101SMatthew G. Knepley 415244171101SMatthew G. Knepley PetscFunctionBegin; 4153a6e0b375SMatthew G. Knepley /* TODO Cache the IS, making it look like an index */ 4154a6e0b375SMatthew G. Knepley switch (etype) { 4155a6e0b375SMatthew G. Knepley case DM_ENC_SUPERMESH: 4156a6e0b375SMatthew G. Knepley sdm = dmB; 41579566063dSJacob Faibussowitsch PetscCall(DMPlexGetSubpointIS(sdm, &subpointIS)); 41589566063dSJacob Faibussowitsch PetscCall(ISGetIndices(subpointIS, &subpoints)); 4159a6e0b375SMatthew G. Knepley *pA = subpoints[pB]; 41609566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(subpointIS, &subpoints)); 4161a6e0b375SMatthew G. Knepley break; 4162a6e0b375SMatthew G. Knepley case DM_ENC_SUBMESH: 4163a6e0b375SMatthew G. Knepley sdm = dmA; 41649566063dSJacob Faibussowitsch PetscCall(DMPlexGetSubpointIS(sdm, &subpointIS)); 41659566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(subpointIS, &numSubpoints)); 41669566063dSJacob Faibussowitsch PetscCall(ISGetIndices(subpointIS, &subpoints)); 41679566063dSJacob Faibussowitsch PetscCall(PetscFindInt(pB, numSubpoints, subpoints, pA)); 4168a6e0b375SMatthew G. Knepley if (*pA < 0) { 41699566063dSJacob Faibussowitsch PetscCall(DMViewFromOptions(dmA, NULL, "-dm_enc_A_view")); 41709566063dSJacob Faibussowitsch PetscCall(DMViewFromOptions(dmB, NULL, "-dm_enc_B_view")); 417163a3b9bcSJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Point %" PetscInt_FMT " not found in submesh", pB); 4172a6e0b375SMatthew G. Knepley } 41739566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(subpointIS, &subpoints)); 4174a6e0b375SMatthew G. Knepley break; 4175a6e0b375SMatthew G. Knepley case DM_ENC_EQUALITY: 4176d71ae5a4SJacob Faibussowitsch case DM_ENC_NONE: 4177d71ae5a4SJacob Faibussowitsch *pA = pB; 4178d71ae5a4SJacob Faibussowitsch break; 41799371c9d4SSatish Balay case DM_ENC_UNKNOWN: { 4180a6e0b375SMatthew G. Knepley DMEnclosureType enc; 418144171101SMatthew G. Knepley 41829566063dSJacob Faibussowitsch PetscCall(DMGetEnclosureRelation(dmA, dmB, &enc)); 41839566063dSJacob Faibussowitsch PetscCall(DMGetEnclosurePoint(dmA, dmB, enc, pB, pA)); 41849371c9d4SSatish Balay } break; 4185d71ae5a4SJacob Faibussowitsch default: 4186d71ae5a4SJacob Faibussowitsch SETERRQ(PetscObjectComm((PetscObject)dmA), PETSC_ERR_ARG_OUTOFRANGE, "Invalid enclosure type %d", (int)etype); 418744171101SMatthew G. Knepley } 418844171101SMatthew G. Knepley PetscFunctionReturn(0); 418944171101SMatthew G. Knepley } 4190