1af0996ceSBarry Smith #include <petsc/private/dmpleximpl.h> /*I "petscdmplex.h" I*/ 2c58f1c22SToby Isaac #include <petsc/private/dmlabelimpl.h> /*I "petscdmlabel.h" I*/ 30c312b8eSJed Brown #include <petscsf.h> 4e6ccafaeSMatthew G Knepley 5412e9a14SMatthew G. Knepley static PetscErrorCode DMPlexCellIsHybrid_Internal(DM dm, PetscInt p, PetscBool *isHybrid) 6412e9a14SMatthew G. Knepley { 7412e9a14SMatthew G. Knepley DMPolytopeType ct; 8412e9a14SMatthew G. Knepley PetscErrorCode ierr; 9412e9a14SMatthew G. Knepley 10412e9a14SMatthew G. Knepley PetscFunctionBegin; 11412e9a14SMatthew G. Knepley ierr = DMPlexGetCellType(dm, p, &ct);CHKERRQ(ierr); 12412e9a14SMatthew G. Knepley switch (ct) { 13412e9a14SMatthew G. Knepley case DM_POLYTOPE_POINT_PRISM_TENSOR: 14412e9a14SMatthew G. Knepley case DM_POLYTOPE_SEG_PRISM_TENSOR: 15412e9a14SMatthew G. Knepley case DM_POLYTOPE_TRI_PRISM_TENSOR: 16412e9a14SMatthew G. Knepley case DM_POLYTOPE_QUAD_PRISM_TENSOR: 17412e9a14SMatthew G. Knepley *isHybrid = PETSC_TRUE; 18412e9a14SMatthew G. Knepley default: *isHybrid = PETSC_FALSE; 19412e9a14SMatthew G. Knepley } 20412e9a14SMatthew G. Knepley PetscFunctionReturn(0); 21412e9a14SMatthew G. Knepley } 22412e9a14SMatthew G. Knepley 23412e9a14SMatthew G. Knepley static PetscErrorCode DMPlexGetTensorPrismBounds_Internal(DM dm, PetscInt dim, PetscInt *cStart, PetscInt *cEnd) 24412e9a14SMatthew G. Knepley { 25412e9a14SMatthew G. Knepley DMLabel ctLabel; 26412e9a14SMatthew G. Knepley PetscErrorCode ierr; 27412e9a14SMatthew G. Knepley 28412e9a14SMatthew G. Knepley PetscFunctionBegin; 29412e9a14SMatthew G. Knepley if (cStart) *cStart = -1; 30412e9a14SMatthew G. Knepley if (cEnd) *cEnd = -1; 31412e9a14SMatthew G. Knepley ierr = DMPlexGetCellTypeLabel(dm, &ctLabel);CHKERRQ(ierr); 32412e9a14SMatthew G. Knepley switch (dim) { 33412e9a14SMatthew G. Knepley case 1: ierr = DMLabelGetStratumBounds(ctLabel, DM_POLYTOPE_POINT_PRISM_TENSOR, cStart, cEnd);CHKERRQ(ierr);break; 34412e9a14SMatthew G. Knepley case 2: ierr = DMLabelGetStratumBounds(ctLabel, DM_POLYTOPE_SEG_PRISM_TENSOR, cStart, cEnd);CHKERRQ(ierr);break; 35412e9a14SMatthew G. Knepley case 3: 36412e9a14SMatthew G. Knepley ierr = DMLabelGetStratumBounds(ctLabel, DM_POLYTOPE_TRI_PRISM_TENSOR, cStart, cEnd);CHKERRQ(ierr); 37412e9a14SMatthew G. Knepley if (*cStart < 0) {ierr = DMLabelGetStratumBounds(ctLabel, DM_POLYTOPE_QUAD_PRISM_TENSOR, cStart, cEnd);CHKERRQ(ierr);} 38412e9a14SMatthew G. Knepley break; 39412e9a14SMatthew G. Knepley default: PetscFunctionReturn(0); 40412e9a14SMatthew G. Knepley } 41412e9a14SMatthew G. Knepley PetscFunctionReturn(0); 42412e9a14SMatthew G. Knepley } 43412e9a14SMatthew G. Knepley 44e752be1aSMatthew G. Knepley static PetscErrorCode DMPlexMarkBoundaryFaces_Internal(DM dm, PetscInt val, PetscInt cellHeight, DMLabel label) 4530560a7bSMatthew G. Knepley { 4630560a7bSMatthew G. Knepley PetscInt fStart, fEnd, f; 4730560a7bSMatthew G. Knepley PetscErrorCode ierr; 4830560a7bSMatthew G. Knepley 4930560a7bSMatthew G. Knepley PetscFunctionBegin; 5030560a7bSMatthew G. Knepley ierr = DMPlexGetHeightStratum(dm, cellHeight+1, &fStart, &fEnd);CHKERRQ(ierr); 5130560a7bSMatthew G. Knepley for (f = fStart; f < fEnd; ++f) { 5230560a7bSMatthew G. Knepley PetscInt supportSize; 5330560a7bSMatthew G. Knepley 5430560a7bSMatthew G. Knepley ierr = DMPlexGetSupportSize(dm, f, &supportSize);CHKERRQ(ierr); 55e752be1aSMatthew G. Knepley if (supportSize == 1) { 56e752be1aSMatthew G. Knepley if (val < 0) { 57e752be1aSMatthew G. Knepley PetscInt *closure = NULL; 58e752be1aSMatthew G. Knepley PetscInt clSize, cl, cval; 59e752be1aSMatthew G. Knepley 60e752be1aSMatthew G. Knepley ierr = DMPlexGetTransitiveClosure(dm, f, PETSC_TRUE, &clSize, &closure);CHKERRQ(ierr); 61e752be1aSMatthew G. Knepley for (cl = 0; cl < clSize*2; cl += 2) { 62e752be1aSMatthew G. Knepley ierr = DMLabelGetValue(label, closure[cl], &cval);CHKERRQ(ierr); 63e752be1aSMatthew G. Knepley if (cval < 0) continue; 64e752be1aSMatthew G. Knepley ierr = DMLabelSetValue(label, f, cval);CHKERRQ(ierr); 65e752be1aSMatthew G. Knepley break; 66e752be1aSMatthew G. Knepley } 67e752be1aSMatthew G. Knepley if (cl == clSize*2) {ierr = DMLabelSetValue(label, f, 1);CHKERRQ(ierr);} 68e752be1aSMatthew G. Knepley ierr = DMPlexRestoreTransitiveClosure(dm, f, PETSC_TRUE, &clSize, &closure);CHKERRQ(ierr); 69e752be1aSMatthew G. Knepley } else { 70e752be1aSMatthew G. Knepley ierr = DMLabelSetValue(label, f, val);CHKERRQ(ierr); 71e752be1aSMatthew G. Knepley } 72e752be1aSMatthew G. Knepley } 7330560a7bSMatthew G. Knepley } 7430560a7bSMatthew G. Knepley PetscFunctionReturn(0); 7530560a7bSMatthew G. Knepley } 7630560a7bSMatthew G. Knepley 77cd0c2139SMatthew G Knepley /*@ 78cd0c2139SMatthew G Knepley DMPlexMarkBoundaryFaces - Mark all faces on the boundary 79cd0c2139SMatthew G Knepley 80cd0c2139SMatthew G Knepley Not Collective 81cd0c2139SMatthew G Knepley 82cd0c2139SMatthew G Knepley Input Parameter: 83e752be1aSMatthew G. Knepley + dm - The original DM 84e752be1aSMatthew G. Knepley - val - The marker value, or PETSC_DETERMINE to use some value in the closure (or 1 if none are found) 85cd0c2139SMatthew G Knepley 86cd0c2139SMatthew G Knepley Output Parameter: 87e752be1aSMatthew G. Knepley . label - The DMLabel marking boundary faces with the given value 88cd0c2139SMatthew G Knepley 89cd0c2139SMatthew G Knepley Level: developer 90cd0c2139SMatthew G Knepley 91c58f1c22SToby Isaac .seealso: DMLabelCreate(), DMCreateLabel() 9209f723d9SJed Brown @*/ 93e752be1aSMatthew G. Knepley PetscErrorCode DMPlexMarkBoundaryFaces(DM dm, PetscInt val, DMLabel label) 94cd0c2139SMatthew G Knepley { 95827c4036SVaclav Hapla DMPlexInterpolatedFlag flg; 96cd0c2139SMatthew G Knepley PetscErrorCode ierr; 97cd0c2139SMatthew G Knepley 98cd0c2139SMatthew G Knepley PetscFunctionBegin; 99827c4036SVaclav Hapla PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 100827c4036SVaclav Hapla ierr = DMPlexIsInterpolated(dm, &flg);CHKERRQ(ierr); 101827c4036SVaclav Hapla if (flg != DMPLEX_INTERPOLATED_FULL) SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "DM is not fully interpolated on this rank"); 102e752be1aSMatthew G. Knepley ierr = DMPlexMarkBoundaryFaces_Internal(dm, val, 0, label);CHKERRQ(ierr); 103cd0c2139SMatthew G Knepley PetscFunctionReturn(0); 104cd0c2139SMatthew G Knepley } 105cd0c2139SMatthew G Knepley 106c08575a3SMatthew G. Knepley static PetscErrorCode DMPlexLabelComplete_Internal(DM dm, DMLabel label, PetscBool completeCells) 107b0bf5782SToby Isaac { 108b0bf5782SToby Isaac IS valueIS; 109ac51f24eSSander Arens PetscSF sfPoint; 110b0bf5782SToby Isaac const PetscInt *values; 111ac51f24eSSander Arens PetscInt numValues, v, cStart, cEnd, nroots; 112b0bf5782SToby Isaac PetscErrorCode ierr; 113b0bf5782SToby Isaac 114b0bf5782SToby Isaac PetscFunctionBegin; 115b0bf5782SToby Isaac ierr = DMLabelGetNumValues(label, &numValues);CHKERRQ(ierr); 116b0bf5782SToby Isaac ierr = DMLabelGetValueIS(label, &valueIS);CHKERRQ(ierr); 117b0bf5782SToby Isaac ierr = DMPlexGetHeightStratum(dm,0,&cStart,&cEnd);CHKERRQ(ierr); 118b0bf5782SToby Isaac ierr = ISGetIndices(valueIS, &values);CHKERRQ(ierr); 119b0bf5782SToby Isaac for (v = 0; v < numValues; ++v) { 120b0bf5782SToby Isaac IS pointIS; 121b0bf5782SToby Isaac const PetscInt *points; 122b0bf5782SToby Isaac PetscInt numPoints, p; 123b0bf5782SToby Isaac 124b0bf5782SToby Isaac ierr = DMLabelGetStratumSize(label, values[v], &numPoints);CHKERRQ(ierr); 125b0bf5782SToby Isaac ierr = DMLabelGetStratumIS(label, values[v], &pointIS);CHKERRQ(ierr); 126b0bf5782SToby Isaac ierr = ISGetIndices(pointIS, &points);CHKERRQ(ierr); 127b0bf5782SToby Isaac for (p = 0; p < numPoints; ++p) { 128b0bf5782SToby Isaac PetscInt q = points[p]; 129b0bf5782SToby Isaac PetscInt *closure = NULL; 130b0bf5782SToby Isaac PetscInt closureSize, c; 131b0bf5782SToby Isaac 132b0bf5782SToby Isaac if (cStart <= q && q < cEnd && !completeCells) { /* skip cells */ 133b0bf5782SToby Isaac continue; 134b0bf5782SToby Isaac } 135b0bf5782SToby Isaac ierr = DMPlexGetTransitiveClosure(dm, q, PETSC_TRUE, &closureSize, &closure);CHKERRQ(ierr); 136b0bf5782SToby Isaac for (c = 0; c < closureSize*2; c += 2) { 137b0bf5782SToby Isaac ierr = DMLabelSetValue(label, closure[c], values[v]);CHKERRQ(ierr); 138b0bf5782SToby Isaac } 139b0bf5782SToby Isaac ierr = DMPlexRestoreTransitiveClosure(dm, q, PETSC_TRUE, &closureSize, &closure);CHKERRQ(ierr); 140b0bf5782SToby Isaac } 141b0bf5782SToby Isaac ierr = ISRestoreIndices(pointIS, &points);CHKERRQ(ierr); 142b0bf5782SToby Isaac ierr = ISDestroy(&pointIS);CHKERRQ(ierr); 143b0bf5782SToby Isaac } 144b0bf5782SToby Isaac ierr = ISRestoreIndices(valueIS, &values);CHKERRQ(ierr); 145b0bf5782SToby Isaac ierr = ISDestroy(&valueIS);CHKERRQ(ierr); 146ac51f24eSSander Arens ierr = DMGetPointSF(dm, &sfPoint);CHKERRQ(ierr); 147ac51f24eSSander Arens ierr = PetscSFGetGraph(sfPoint, &nroots, NULL, NULL, NULL);CHKERRQ(ierr); 148ac51f24eSSander Arens if (nroots >= 0) { 14926279d81SSanderA DMLabel lblRoots, lblLeaves; 15026279d81SSanderA IS valueIS, pointIS; 15126279d81SSanderA const PetscInt *values; 15226279d81SSanderA PetscInt numValues, v; 15326279d81SSanderA PetscErrorCode ierr; 15426279d81SSanderA 15526279d81SSanderA /* Pull point contributions from remote leaves into local roots */ 15626279d81SSanderA ierr = DMLabelGather(label, sfPoint, &lblLeaves);CHKERRQ(ierr); 15726279d81SSanderA ierr = DMLabelGetValueIS(lblLeaves, &valueIS);CHKERRQ(ierr); 15826279d81SSanderA ierr = ISGetLocalSize(valueIS, &numValues);CHKERRQ(ierr); 15926279d81SSanderA ierr = ISGetIndices(valueIS, &values);CHKERRQ(ierr); 16026279d81SSanderA for (v = 0; v < numValues; ++v) { 16126279d81SSanderA const PetscInt value = values[v]; 16226279d81SSanderA 16326279d81SSanderA ierr = DMLabelGetStratumIS(lblLeaves, value, &pointIS);CHKERRQ(ierr); 16426279d81SSanderA ierr = DMLabelInsertIS(label, pointIS, value);CHKERRQ(ierr); 16526279d81SSanderA ierr = ISDestroy(&pointIS);CHKERRQ(ierr); 16626279d81SSanderA } 16726279d81SSanderA ierr = ISRestoreIndices(valueIS, &values);CHKERRQ(ierr); 16826279d81SSanderA ierr = ISDestroy(&valueIS);CHKERRQ(ierr); 16926279d81SSanderA ierr = DMLabelDestroy(&lblLeaves);CHKERRQ(ierr); 17026279d81SSanderA /* Push point contributions from roots into remote leaves */ 17126279d81SSanderA ierr = DMLabelDistribute(label, sfPoint, &lblRoots);CHKERRQ(ierr); 17226279d81SSanderA ierr = DMLabelGetValueIS(lblRoots, &valueIS);CHKERRQ(ierr); 17326279d81SSanderA ierr = ISGetLocalSize(valueIS, &numValues);CHKERRQ(ierr); 17426279d81SSanderA ierr = ISGetIndices(valueIS, &values);CHKERRQ(ierr); 17526279d81SSanderA for (v = 0; v < numValues; ++v) { 17626279d81SSanderA const PetscInt value = values[v]; 17726279d81SSanderA 17826279d81SSanderA ierr = DMLabelGetStratumIS(lblRoots, value, &pointIS);CHKERRQ(ierr); 17926279d81SSanderA ierr = DMLabelInsertIS(label, pointIS, value);CHKERRQ(ierr); 18026279d81SSanderA ierr = ISDestroy(&pointIS);CHKERRQ(ierr); 18126279d81SSanderA } 18226279d81SSanderA ierr = ISRestoreIndices(valueIS, &values);CHKERRQ(ierr); 18326279d81SSanderA ierr = ISDestroy(&valueIS);CHKERRQ(ierr); 18426279d81SSanderA ierr = DMLabelDestroy(&lblRoots);CHKERRQ(ierr); 18526279d81SSanderA } 186b0bf5782SToby Isaac PetscFunctionReturn(0); 187b0bf5782SToby Isaac } 188b0bf5782SToby Isaac 1892be2b188SMatthew G Knepley /*@ 1902be2b188SMatthew G Knepley DMPlexLabelComplete - Starting with a label marking points on a surface, we add the transitive closure to the surface 1912be2b188SMatthew G Knepley 1922be2b188SMatthew G Knepley Input Parameters: 1932be2b188SMatthew G Knepley + dm - The DM 1942be2b188SMatthew G Knepley - label - A DMLabel marking the surface points 1952be2b188SMatthew G Knepley 1962be2b188SMatthew G Knepley Output Parameter: 1972be2b188SMatthew G Knepley . label - A DMLabel marking all surface points in the transitive closure 1982be2b188SMatthew G Knepley 1992be2b188SMatthew G Knepley Level: developer 2002be2b188SMatthew G Knepley 2012be2b188SMatthew G Knepley .seealso: DMPlexLabelCohesiveComplete() 2022be2b188SMatthew G Knepley @*/ 2032be2b188SMatthew G Knepley PetscErrorCode DMPlexLabelComplete(DM dm, DMLabel label) 2042be2b188SMatthew G Knepley { 2052be2b188SMatthew G Knepley PetscErrorCode ierr; 2062be2b188SMatthew G Knepley 2072be2b188SMatthew G Knepley PetscFunctionBegin; 208b0bf5782SToby Isaac ierr = DMPlexLabelComplete_Internal(dm, label, PETSC_TRUE);CHKERRQ(ierr); 2092be2b188SMatthew G Knepley PetscFunctionReturn(0); 2102be2b188SMatthew G Knepley } 2112be2b188SMatthew G Knepley 2126cf0e42fSMatthew G. Knepley /*@ 213a6e0b375SMatthew G. Knepley DMPlexLabelAddCells - Starting with a label marking points on a surface, we add a cell for each point 2146cf0e42fSMatthew G. Knepley 2156cf0e42fSMatthew G. Knepley Input Parameters: 2166cf0e42fSMatthew G. Knepley + dm - The DM 2176cf0e42fSMatthew G. Knepley - label - A DMLabel marking the surface points 2186cf0e42fSMatthew G. Knepley 2196cf0e42fSMatthew G. Knepley Output Parameter: 2206cf0e42fSMatthew G. Knepley . label - A DMLabel incorporating cells 2216cf0e42fSMatthew G. Knepley 2226cf0e42fSMatthew G. Knepley Level: developer 2236cf0e42fSMatthew G. Knepley 2246cf0e42fSMatthew G. Knepley Note: The cells allow FEM boundary conditions to be applied using the cell geometry 2256cf0e42fSMatthew G. Knepley 226a6e0b375SMatthew G. Knepley .seealso: DMPlexLabelAddFaceCells(), DMPlexLabelComplete(), DMPlexLabelCohesiveComplete() 2276cf0e42fSMatthew G. Knepley @*/ 2286cf0e42fSMatthew G. Knepley PetscErrorCode DMPlexLabelAddCells(DM dm, DMLabel label) 2296cf0e42fSMatthew G. Knepley { 2306cf0e42fSMatthew G. Knepley IS valueIS; 2316cf0e42fSMatthew G. Knepley const PetscInt *values; 232485ad865SMatthew G. Knepley PetscInt numValues, v, cStart, cEnd; 2336cf0e42fSMatthew G. Knepley PetscErrorCode ierr; 2346cf0e42fSMatthew G. Knepley 2356cf0e42fSMatthew G. Knepley PetscFunctionBegin; 236412e9a14SMatthew G. Knepley ierr = DMPlexGetSimplexOrBoxCells(dm, 0, &cStart, &cEnd);CHKERRQ(ierr); 2376cf0e42fSMatthew G. Knepley ierr = DMLabelGetNumValues(label, &numValues);CHKERRQ(ierr); 2386cf0e42fSMatthew G. Knepley ierr = DMLabelGetValueIS(label, &valueIS);CHKERRQ(ierr); 2396cf0e42fSMatthew G. Knepley ierr = ISGetIndices(valueIS, &values);CHKERRQ(ierr); 2406cf0e42fSMatthew G. Knepley for (v = 0; v < numValues; ++v) { 2416cf0e42fSMatthew G. Knepley IS pointIS; 2426cf0e42fSMatthew G. Knepley const PetscInt *points; 2436cf0e42fSMatthew G. Knepley PetscInt numPoints, p; 2446cf0e42fSMatthew G. Knepley 2456cf0e42fSMatthew G. Knepley ierr = DMLabelGetStratumSize(label, values[v], &numPoints);CHKERRQ(ierr); 2466cf0e42fSMatthew G. Knepley ierr = DMLabelGetStratumIS(label, values[v], &pointIS);CHKERRQ(ierr); 2476cf0e42fSMatthew G. Knepley ierr = ISGetIndices(pointIS, &points);CHKERRQ(ierr); 2486cf0e42fSMatthew G. Knepley for (p = 0; p < numPoints; ++p) { 2496cf0e42fSMatthew G. Knepley PetscInt *closure = NULL; 250a6e0b375SMatthew G. Knepley PetscInt closureSize, cl; 2516cf0e42fSMatthew G. Knepley 2526cf0e42fSMatthew G. Knepley ierr = DMPlexGetTransitiveClosure(dm, points[p], PETSC_FALSE, &closureSize, &closure);CHKERRQ(ierr); 25322eabd52SMatthew G. Knepley for (cl = closureSize-1; cl > 0; --cl) { 254a6e0b375SMatthew G. Knepley const PetscInt cell = closure[cl*2]; 255a6e0b375SMatthew G. Knepley if ((cell >= cStart) && (cell < cEnd)) {ierr = DMLabelSetValue(label, cell, values[v]);CHKERRQ(ierr); break;} 25622eabd52SMatthew G. Knepley } 2576cf0e42fSMatthew G. Knepley ierr = DMPlexRestoreTransitiveClosure(dm, points[p], PETSC_FALSE, &closureSize, &closure);CHKERRQ(ierr); 2586cf0e42fSMatthew G. Knepley } 2596cf0e42fSMatthew G. Knepley ierr = ISRestoreIndices(pointIS, &points);CHKERRQ(ierr); 2606cf0e42fSMatthew G. Knepley ierr = ISDestroy(&pointIS);CHKERRQ(ierr); 2616cf0e42fSMatthew G. Knepley } 2626cf0e42fSMatthew G. Knepley ierr = ISRestoreIndices(valueIS, &values);CHKERRQ(ierr); 2636cf0e42fSMatthew G. Knepley ierr = ISDestroy(&valueIS);CHKERRQ(ierr); 2646cf0e42fSMatthew G. Knepley PetscFunctionReturn(0); 2656cf0e42fSMatthew G. Knepley } 2666cf0e42fSMatthew G. Knepley 267f402d5e4SToby Isaac /*@ 268a6e0b375SMatthew G. Knepley DMPlexLabelAddFaceCells - Starting with a label marking faces on a surface, we add a cell for each face 269a6e0b375SMatthew G. Knepley 270a6e0b375SMatthew G. Knepley Input Parameters: 271a6e0b375SMatthew G. Knepley + dm - The DM 272a6e0b375SMatthew G. Knepley - label - A DMLabel marking the surface points 273a6e0b375SMatthew G. Knepley 274a6e0b375SMatthew G. Knepley Output Parameter: 275a6e0b375SMatthew G. Knepley . label - A DMLabel incorporating cells 276a6e0b375SMatthew G. Knepley 277a6e0b375SMatthew G. Knepley Level: developer 278a6e0b375SMatthew G. Knepley 279a6e0b375SMatthew G. Knepley Note: The cells allow FEM boundary conditions to be applied using the cell geometry 280a6e0b375SMatthew G. Knepley 281a6e0b375SMatthew G. Knepley .seealso: DMPlexLabelAddCells(), DMPlexLabelComplete(), DMPlexLabelCohesiveComplete() 282a6e0b375SMatthew G. Knepley @*/ 283a6e0b375SMatthew G. Knepley PetscErrorCode DMPlexLabelAddFaceCells(DM dm, DMLabel label) 284a6e0b375SMatthew G. Knepley { 285a6e0b375SMatthew G. Knepley IS valueIS; 286a6e0b375SMatthew G. Knepley const PetscInt *values; 287a6e0b375SMatthew G. Knepley PetscInt numValues, v, cStart, cEnd, fStart, fEnd; 288a6e0b375SMatthew G. Knepley PetscErrorCode ierr; 289a6e0b375SMatthew G. Knepley 290a6e0b375SMatthew G. Knepley PetscFunctionBegin; 291412e9a14SMatthew G. Knepley ierr = DMPlexGetSimplexOrBoxCells(dm, 0, &cStart, &cEnd);CHKERRQ(ierr); 292a6e0b375SMatthew G. Knepley ierr = DMPlexGetHeightStratum(dm, 1, &fStart, &fEnd);CHKERRQ(ierr); 293a6e0b375SMatthew G. Knepley ierr = DMLabelGetNumValues(label, &numValues);CHKERRQ(ierr); 294a6e0b375SMatthew G. Knepley ierr = DMLabelGetValueIS(label, &valueIS);CHKERRQ(ierr); 295a6e0b375SMatthew G. Knepley ierr = ISGetIndices(valueIS, &values);CHKERRQ(ierr); 296a6e0b375SMatthew G. Knepley for (v = 0; v < numValues; ++v) { 297a6e0b375SMatthew G. Knepley IS pointIS; 298a6e0b375SMatthew G. Knepley const PetscInt *points; 299a6e0b375SMatthew G. Knepley PetscInt numPoints, p; 300a6e0b375SMatthew G. Knepley 301a6e0b375SMatthew G. Knepley ierr = DMLabelGetStratumSize(label, values[v], &numPoints);CHKERRQ(ierr); 302a6e0b375SMatthew G. Knepley ierr = DMLabelGetStratumIS(label, values[v], &pointIS);CHKERRQ(ierr); 303a6e0b375SMatthew G. Knepley ierr = ISGetIndices(pointIS, &points);CHKERRQ(ierr); 304a6e0b375SMatthew G. Knepley for (p = 0; p < numPoints; ++p) { 305a6e0b375SMatthew G. Knepley const PetscInt face = points[p]; 306a6e0b375SMatthew G. Knepley PetscInt *closure = NULL; 307a6e0b375SMatthew G. Knepley PetscInt closureSize, cl; 308a6e0b375SMatthew G. Knepley 309a6e0b375SMatthew G. Knepley if ((face < fStart) || (face >= fEnd)) continue; 310a6e0b375SMatthew G. Knepley ierr = DMPlexGetTransitiveClosure(dm, face, PETSC_FALSE, &closureSize, &closure);CHKERRQ(ierr); 311a6e0b375SMatthew G. Knepley for (cl = closureSize-1; cl > 0; --cl) { 312a6e0b375SMatthew G. Knepley const PetscInt cell = closure[cl*2]; 313a6e0b375SMatthew G. Knepley if ((cell >= cStart) && (cell < cEnd)) {ierr = DMLabelSetValue(label, cell, values[v]);CHKERRQ(ierr); break;} 314a6e0b375SMatthew G. Knepley } 315a6e0b375SMatthew G. Knepley ierr = DMPlexRestoreTransitiveClosure(dm, face, PETSC_FALSE, &closureSize, &closure);CHKERRQ(ierr); 316a6e0b375SMatthew G. Knepley } 317a6e0b375SMatthew G. Knepley ierr = ISRestoreIndices(pointIS, &points);CHKERRQ(ierr); 318a6e0b375SMatthew G. Knepley ierr = ISDestroy(&pointIS);CHKERRQ(ierr); 319a6e0b375SMatthew G. Knepley } 320a6e0b375SMatthew G. Knepley ierr = ISRestoreIndices(valueIS, &values);CHKERRQ(ierr); 321a6e0b375SMatthew G. Knepley ierr = ISDestroy(&valueIS);CHKERRQ(ierr); 322a6e0b375SMatthew G. Knepley PetscFunctionReturn(0); 323a6e0b375SMatthew G. Knepley } 324a6e0b375SMatthew G. Knepley 325a6e0b375SMatthew G. Knepley /*@ 326f402d5e4SToby Isaac DMPlexLabelClearCells - Remove cells from a label 327f402d5e4SToby Isaac 328f402d5e4SToby Isaac Input Parameters: 329f402d5e4SToby Isaac + dm - The DM 330f402d5e4SToby Isaac - label - A DMLabel marking surface points and their adjacent cells 331f402d5e4SToby Isaac 332f402d5e4SToby Isaac Output Parameter: 333f402d5e4SToby Isaac . label - A DMLabel without cells 334f402d5e4SToby Isaac 335f402d5e4SToby Isaac Level: developer 336f402d5e4SToby Isaac 337a6e0b375SMatthew G. Knepley Note: This undoes DMPlexLabelAddCells() or DMPlexLabelAddFaceCells() 338f402d5e4SToby Isaac 339f402d5e4SToby Isaac .seealso: DMPlexLabelComplete(), DMPlexLabelCohesiveComplete(), DMPlexLabelAddCells() 340f402d5e4SToby Isaac @*/ 341f402d5e4SToby Isaac PetscErrorCode DMPlexLabelClearCells(DM dm, DMLabel label) 342f402d5e4SToby Isaac { 343f402d5e4SToby Isaac IS valueIS; 344f402d5e4SToby Isaac const PetscInt *values; 345485ad865SMatthew G. Knepley PetscInt numValues, v, cStart, cEnd; 346f402d5e4SToby Isaac PetscErrorCode ierr; 347f402d5e4SToby Isaac 348f402d5e4SToby Isaac PetscFunctionBegin; 349412e9a14SMatthew G. Knepley ierr = DMPlexGetSimplexOrBoxCells(dm, 0, &cStart, &cEnd);CHKERRQ(ierr); 350f402d5e4SToby Isaac ierr = DMLabelGetNumValues(label, &numValues);CHKERRQ(ierr); 351f402d5e4SToby Isaac ierr = DMLabelGetValueIS(label, &valueIS);CHKERRQ(ierr); 352f402d5e4SToby Isaac ierr = ISGetIndices(valueIS, &values);CHKERRQ(ierr); 353f402d5e4SToby Isaac for (v = 0; v < numValues; ++v) { 354f402d5e4SToby Isaac IS pointIS; 355f402d5e4SToby Isaac const PetscInt *points; 356f402d5e4SToby Isaac PetscInt numPoints, p; 357f402d5e4SToby Isaac 358f402d5e4SToby Isaac ierr = DMLabelGetStratumSize(label, values[v], &numPoints);CHKERRQ(ierr); 359f402d5e4SToby Isaac ierr = DMLabelGetStratumIS(label, values[v], &pointIS);CHKERRQ(ierr); 360f402d5e4SToby Isaac ierr = ISGetIndices(pointIS, &points);CHKERRQ(ierr); 361f402d5e4SToby Isaac for (p = 0; p < numPoints; ++p) { 362f402d5e4SToby Isaac PetscInt point = points[p]; 363f402d5e4SToby Isaac 364f402d5e4SToby Isaac if (point >= cStart && point < cEnd) { 365f402d5e4SToby Isaac ierr = DMLabelClearValue(label,point,values[v]);CHKERRQ(ierr); 366f402d5e4SToby Isaac } 367f402d5e4SToby Isaac } 368f402d5e4SToby Isaac ierr = ISRestoreIndices(pointIS, &points);CHKERRQ(ierr); 369f402d5e4SToby Isaac ierr = ISDestroy(&pointIS);CHKERRQ(ierr); 370f402d5e4SToby Isaac } 371f402d5e4SToby Isaac ierr = ISRestoreIndices(valueIS, &values);CHKERRQ(ierr); 372f402d5e4SToby Isaac ierr = ISDestroy(&valueIS);CHKERRQ(ierr); 373f402d5e4SToby Isaac PetscFunctionReturn(0); 374f402d5e4SToby Isaac } 375f402d5e4SToby Isaac 37659eef20bSToby Isaac /* take (oldEnd, added) pairs, ordered by height and convert them to (oldstart, newstart) pairs, ordered by ascending 37759eef20bSToby Isaac * index (skipping first, which is (0,0)) */ 3782582d50cSToby Isaac PETSC_STATIC_INLINE PetscErrorCode DMPlexShiftPointSetUp_Internal(PetscInt depth, PetscInt depthShift[]) 379cd0c2139SMatthew G Knepley { 3802582d50cSToby Isaac PetscInt d, off = 0; 3812582d50cSToby Isaac 3822582d50cSToby Isaac PetscFunctionBegin; 38359eef20bSToby Isaac /* sort by (oldend): yes this is an O(n^2) sort, we expect depth <= 3 */ 3840974a383SToby Isaac for (d = 0; d < depth; d++) { 3852582d50cSToby Isaac PetscInt firstd = d; 3860974a383SToby Isaac PetscInt firstStart = depthShift[2*d]; 3872582d50cSToby Isaac PetscInt e; 3882582d50cSToby Isaac 3892582d50cSToby Isaac for (e = d+1; e <= depth; e++) { 3902582d50cSToby Isaac if (depthShift[2*e] < firstStart) { 3912582d50cSToby Isaac firstd = e; 3922582d50cSToby Isaac firstStart = depthShift[2*d]; 3932582d50cSToby Isaac } 3942582d50cSToby Isaac } 3952582d50cSToby Isaac if (firstd != d) { 3962582d50cSToby Isaac PetscInt swap[2]; 3972582d50cSToby Isaac 3982582d50cSToby Isaac e = firstd; 3992582d50cSToby Isaac swap[0] = depthShift[2*d]; 4002582d50cSToby Isaac swap[1] = depthShift[2*d+1]; 4012582d50cSToby Isaac depthShift[2*d] = depthShift[2*e]; 4022582d50cSToby Isaac depthShift[2*d+1] = depthShift[2*e+1]; 4032582d50cSToby Isaac depthShift[2*e] = swap[0]; 4042582d50cSToby Isaac depthShift[2*e+1] = swap[1]; 4052582d50cSToby Isaac } 4062582d50cSToby Isaac } 4072582d50cSToby Isaac /* convert (oldstart, added) to (oldstart, newstart) */ 4080974a383SToby Isaac for (d = 0; d <= depth; d++) { 4092582d50cSToby Isaac off += depthShift[2*d+1]; 41059eef20bSToby Isaac depthShift[2*d+1] = depthShift[2*d] + off; 4112582d50cSToby Isaac } 4122582d50cSToby Isaac PetscFunctionReturn(0); 4132582d50cSToby Isaac } 4142582d50cSToby Isaac 4152582d50cSToby Isaac /* depthShift is a list of (old, new) pairs */ 4162582d50cSToby Isaac PETSC_STATIC_INLINE PetscInt DMPlexShiftPoint_Internal(PetscInt p, PetscInt depth, PetscInt depthShift[]) 4172582d50cSToby Isaac { 4182582d50cSToby Isaac PetscInt d; 4192582d50cSToby Isaac PetscInt newOff = 0; 4202582d50cSToby Isaac 4212582d50cSToby Isaac for (d = 0; d <= depth; d++) { 4222582d50cSToby Isaac if (p < depthShift[2*d]) return p + newOff; 4232582d50cSToby Isaac else newOff = depthShift[2*d+1] - depthShift[2*d]; 4242582d50cSToby Isaac } 4250974a383SToby Isaac return p + newOff; 4262582d50cSToby Isaac } 4272582d50cSToby Isaac 4282582d50cSToby Isaac /* depthShift is a list of (old, new) pairs */ 4292582d50cSToby Isaac PETSC_STATIC_INLINE PetscInt DMPlexShiftPointInverse_Internal(PetscInt p, PetscInt depth, PetscInt depthShift[]) 4302582d50cSToby Isaac { 4312582d50cSToby Isaac PetscInt d; 4322582d50cSToby Isaac PetscInt newOff = 0; 4332582d50cSToby Isaac 4342582d50cSToby Isaac for (d = 0; d <= depth; d++) { 4352582d50cSToby Isaac if (p < depthShift[2*d+1]) return p + newOff; 4362582d50cSToby Isaac else newOff = depthShift[2*d] - depthShift[2*d+1]; 4372582d50cSToby Isaac } 4380974a383SToby Isaac return p + newOff; 439cd0c2139SMatthew G Knepley } 440cd0c2139SMatthew G Knepley 441cd0c2139SMatthew G Knepley static PetscErrorCode DMPlexShiftSizes_Internal(DM dm, PetscInt depthShift[], DM dmNew) 442cd0c2139SMatthew G Knepley { 443cd0c2139SMatthew G Knepley PetscInt depth = 0, d, pStart, pEnd, p; 444fa8e8ae5SToby Isaac DMLabel depthLabel; 445cd0c2139SMatthew G Knepley PetscErrorCode ierr; 446cd0c2139SMatthew G Knepley 447cd0c2139SMatthew G Knepley PetscFunctionBegin; 448cd0c2139SMatthew G Knepley ierr = DMPlexGetDepth(dm, &depth);CHKERRQ(ierr); 449cd0c2139SMatthew G Knepley if (depth < 0) PetscFunctionReturn(0); 450cd0c2139SMatthew G Knepley /* Step 1: Expand chart */ 451cd0c2139SMatthew G Knepley ierr = DMPlexGetChart(dm, &pStart, &pEnd);CHKERRQ(ierr); 4520974a383SToby Isaac pEnd = DMPlexShiftPoint_Internal(pEnd,depth,depthShift); 453cd0c2139SMatthew G Knepley ierr = DMPlexSetChart(dmNew, pStart, pEnd);CHKERRQ(ierr); 454fa8e8ae5SToby Isaac ierr = DMCreateLabel(dmNew,"depth");CHKERRQ(ierr); 455fa8e8ae5SToby Isaac ierr = DMPlexGetDepthLabel(dmNew,&depthLabel);CHKERRQ(ierr); 456412e9a14SMatthew G. Knepley ierr = DMCreateLabel(dmNew, "celltype");CHKERRQ(ierr); 457cd0c2139SMatthew G Knepley /* Step 2: Set cone and support sizes */ 458cd0c2139SMatthew G Knepley for (d = 0; d <= depth; ++d) { 459fa8e8ae5SToby Isaac PetscInt pStartNew, pEndNew; 460fa8e8ae5SToby Isaac IS pIS; 461fa8e8ae5SToby Isaac 462cd0c2139SMatthew G Knepley ierr = DMPlexGetDepthStratum(dm, d, &pStart, &pEnd);CHKERRQ(ierr); 463fa8e8ae5SToby Isaac pStartNew = DMPlexShiftPoint_Internal(pStart, depth, depthShift); 464fa8e8ae5SToby Isaac pEndNew = DMPlexShiftPoint_Internal(pEnd, depth, depthShift); 465fa8e8ae5SToby Isaac ierr = ISCreateStride(PETSC_COMM_SELF, pEndNew - pStartNew, pStartNew, 1, &pIS);CHKERRQ(ierr); 466fa8e8ae5SToby Isaac ierr = DMLabelSetStratumIS(depthLabel, d, pIS);CHKERRQ(ierr); 467fa8e8ae5SToby Isaac ierr = ISDestroy(&pIS);CHKERRQ(ierr); 468cd0c2139SMatthew G Knepley for (p = pStart; p < pEnd; ++p) { 4692582d50cSToby Isaac PetscInt newp = DMPlexShiftPoint_Internal(p, depth, depthShift); 470cd0c2139SMatthew G Knepley PetscInt size; 471412e9a14SMatthew G. Knepley DMPolytopeType ct; 472cd0c2139SMatthew G Knepley 473cd0c2139SMatthew G Knepley ierr = DMPlexGetConeSize(dm, p, &size);CHKERRQ(ierr); 474cd0c2139SMatthew G Knepley ierr = DMPlexSetConeSize(dmNew, newp, size);CHKERRQ(ierr); 475cd0c2139SMatthew G Knepley ierr = DMPlexGetSupportSize(dm, p, &size);CHKERRQ(ierr); 476cd0c2139SMatthew G Knepley ierr = DMPlexSetSupportSize(dmNew, newp, size);CHKERRQ(ierr); 477412e9a14SMatthew G. Knepley ierr = DMPlexGetCellType(dm, p, &ct);CHKERRQ(ierr); 478412e9a14SMatthew G. Knepley ierr = DMPlexSetCellType(dmNew, newp, ct);CHKERRQ(ierr); 479cd0c2139SMatthew G Knepley } 480cd0c2139SMatthew G Knepley } 481cd0c2139SMatthew G Knepley PetscFunctionReturn(0); 482cd0c2139SMatthew G Knepley } 483cd0c2139SMatthew G Knepley 484cd0c2139SMatthew G Knepley static PetscErrorCode DMPlexShiftPoints_Internal(DM dm, PetscInt depthShift[], DM dmNew) 485cd0c2139SMatthew G Knepley { 4862582d50cSToby Isaac PetscInt *newpoints; 4872582d50cSToby Isaac PetscInt depth = 0, maxConeSize, maxSupportSize, maxConeSizeNew, maxSupportSizeNew, pStart, pEnd, p; 488cd0c2139SMatthew G Knepley PetscErrorCode ierr; 489cd0c2139SMatthew G Knepley 490cd0c2139SMatthew G Knepley PetscFunctionBegin; 491cd0c2139SMatthew G Knepley ierr = DMPlexGetDepth(dm, &depth);CHKERRQ(ierr); 492cd0c2139SMatthew G Knepley if (depth < 0) PetscFunctionReturn(0); 493cd0c2139SMatthew G Knepley ierr = DMPlexGetMaxSizes(dm, &maxConeSize, &maxSupportSize);CHKERRQ(ierr); 494dcbb62e8SMatthew G. Knepley ierr = DMPlexGetMaxSizes(dmNew, &maxConeSizeNew, &maxSupportSizeNew);CHKERRQ(ierr); 4952582d50cSToby Isaac ierr = PetscMalloc1(PetscMax(PetscMax(maxConeSize, maxSupportSize), PetscMax(maxConeSizeNew, maxSupportSizeNew)),&newpoints);CHKERRQ(ierr); 496cd0c2139SMatthew G Knepley /* Step 5: Set cones and supports */ 497cd0c2139SMatthew G Knepley ierr = DMPlexGetChart(dm, &pStart, &pEnd);CHKERRQ(ierr); 498cd0c2139SMatthew G Knepley for (p = pStart; p < pEnd; ++p) { 499cd0c2139SMatthew G Knepley const PetscInt *points = NULL, *orientations = NULL; 5002582d50cSToby Isaac PetscInt size,sizeNew, i, newp = DMPlexShiftPoint_Internal(p, depth, depthShift); 501cd0c2139SMatthew G Knepley 502cd0c2139SMatthew G Knepley ierr = DMPlexGetConeSize(dm, p, &size);CHKERRQ(ierr); 503cd0c2139SMatthew G Knepley ierr = DMPlexGetCone(dm, p, &points);CHKERRQ(ierr); 504cd0c2139SMatthew G Knepley ierr = DMPlexGetConeOrientation(dm, p, &orientations);CHKERRQ(ierr); 505cd0c2139SMatthew G Knepley for (i = 0; i < size; ++i) { 5062582d50cSToby Isaac newpoints[i] = DMPlexShiftPoint_Internal(points[i], depth, depthShift); 507cd0c2139SMatthew G Knepley } 508cd0c2139SMatthew G Knepley ierr = DMPlexSetCone(dmNew, newp, newpoints);CHKERRQ(ierr); 509cd0c2139SMatthew G Knepley ierr = DMPlexSetConeOrientation(dmNew, newp, orientations);CHKERRQ(ierr); 510cd0c2139SMatthew G Knepley ierr = DMPlexGetSupportSize(dm, p, &size);CHKERRQ(ierr); 511dcbb62e8SMatthew G. Knepley ierr = DMPlexGetSupportSize(dmNew, newp, &sizeNew);CHKERRQ(ierr); 512cd0c2139SMatthew G Knepley ierr = DMPlexGetSupport(dm, p, &points);CHKERRQ(ierr); 513cd0c2139SMatthew G Knepley for (i = 0; i < size; ++i) { 5142582d50cSToby Isaac newpoints[i] = DMPlexShiftPoint_Internal(points[i], depth, depthShift); 515cd0c2139SMatthew G Knepley } 516dcbb62e8SMatthew G. Knepley for (i = size; i < sizeNew; ++i) newpoints[i] = 0; 517cd0c2139SMatthew G Knepley ierr = DMPlexSetSupport(dmNew, newp, newpoints);CHKERRQ(ierr); 518cd0c2139SMatthew G Knepley } 5192582d50cSToby Isaac ierr = PetscFree(newpoints);CHKERRQ(ierr); 520cd0c2139SMatthew G Knepley PetscFunctionReturn(0); 521cd0c2139SMatthew G Knepley } 522cd0c2139SMatthew G Knepley 523cd0c2139SMatthew G Knepley static PetscErrorCode DMPlexShiftCoordinates_Internal(DM dm, PetscInt depthShift[], DM dmNew) 524cd0c2139SMatthew G Knepley { 525cd0c2139SMatthew G Knepley PetscSection coordSection, newCoordSection; 526cd0c2139SMatthew G Knepley Vec coordinates, newCoordinates; 527cd0c2139SMatthew G Knepley PetscScalar *coords, *newCoords; 528f2b8cce1SMatthew G. Knepley PetscInt coordSize, sStart, sEnd; 529f2b8cce1SMatthew G. Knepley PetscInt dim, depth = 0, cStart, cEnd, cStartNew, cEndNew, c, vStart, vEnd, vStartNew, vEndNew, v; 530f2b8cce1SMatthew G. Knepley PetscBool hasCells; 531cd0c2139SMatthew G Knepley PetscErrorCode ierr; 532cd0c2139SMatthew G Knepley 533cd0c2139SMatthew G Knepley PetscFunctionBegin; 534f2b8cce1SMatthew G. Knepley ierr = DMGetCoordinateDim(dm, &dim);CHKERRQ(ierr); 535c0e8cf5fSMatthew G. Knepley ierr = DMSetCoordinateDim(dmNew, dim);CHKERRQ(ierr); 536cd0c2139SMatthew G Knepley ierr = DMPlexGetDepth(dm, &depth);CHKERRQ(ierr); 537cd0c2139SMatthew G Knepley /* Step 8: Convert coordinates */ 538cd0c2139SMatthew G Knepley ierr = DMPlexGetDepthStratum(dm, 0, &vStart, &vEnd);CHKERRQ(ierr); 539f2b8cce1SMatthew G. Knepley ierr = DMPlexGetHeightStratum(dm, 0, &cStart, &cEnd);CHKERRQ(ierr); 540cd0c2139SMatthew G Knepley ierr = DMPlexGetDepthStratum(dmNew, 0, &vStartNew, &vEndNew);CHKERRQ(ierr); 541f2b8cce1SMatthew G. Knepley ierr = DMPlexGetHeightStratum(dmNew, 0, &cStartNew, &cEndNew);CHKERRQ(ierr); 54269d8a9ceSMatthew G. Knepley ierr = DMGetCoordinateSection(dm, &coordSection);CHKERRQ(ierr); 543cd0c2139SMatthew G Knepley ierr = PetscSectionCreate(PetscObjectComm((PetscObject)dm), &newCoordSection);CHKERRQ(ierr); 544cd0c2139SMatthew G Knepley ierr = PetscSectionSetNumFields(newCoordSection, 1);CHKERRQ(ierr); 545cd0c2139SMatthew G Knepley ierr = PetscSectionSetFieldComponents(newCoordSection, 0, dim);CHKERRQ(ierr); 546f2b8cce1SMatthew G. Knepley ierr = PetscSectionGetChart(coordSection, &sStart, &sEnd);CHKERRQ(ierr); 547f2b8cce1SMatthew G. Knepley hasCells = sStart == cStart ? PETSC_TRUE : PETSC_FALSE; 548f2b8cce1SMatthew G. Knepley ierr = PetscSectionSetChart(newCoordSection, hasCells ? cStartNew : vStartNew, vEndNew);CHKERRQ(ierr); 549f2b8cce1SMatthew G. Knepley if (hasCells) { 550f2b8cce1SMatthew G. Knepley for (c = cStart; c < cEnd; ++c) { 551f2b8cce1SMatthew G. Knepley PetscInt cNew = DMPlexShiftPoint_Internal(c, depth, depthShift), dof; 552f2b8cce1SMatthew G. Knepley 553f2b8cce1SMatthew G. Knepley ierr = PetscSectionGetDof(coordSection, c, &dof);CHKERRQ(ierr); 554f2b8cce1SMatthew G. Knepley ierr = PetscSectionSetDof(newCoordSection, cNew, dof);CHKERRQ(ierr); 555f2b8cce1SMatthew G. Knepley ierr = PetscSectionSetFieldDof(newCoordSection, cNew, 0, dof);CHKERRQ(ierr); 556f2b8cce1SMatthew G. Knepley } 557f2b8cce1SMatthew G. Knepley } 558cd0c2139SMatthew G Knepley for (v = vStartNew; v < vEndNew; ++v) { 559cd0c2139SMatthew G Knepley ierr = PetscSectionSetDof(newCoordSection, v, dim);CHKERRQ(ierr); 560cd0c2139SMatthew G Knepley ierr = PetscSectionSetFieldDof(newCoordSection, v, 0, dim);CHKERRQ(ierr); 561cd0c2139SMatthew G Knepley } 562cd0c2139SMatthew G Knepley ierr = PetscSectionSetUp(newCoordSection);CHKERRQ(ierr); 56346e270d4SMatthew G. Knepley ierr = DMSetCoordinateSection(dmNew, PETSC_DETERMINE, newCoordSection);CHKERRQ(ierr); 564cd0c2139SMatthew G Knepley ierr = PetscSectionGetStorageSize(newCoordSection, &coordSize);CHKERRQ(ierr); 5658b9ced59SLisandro Dalcin ierr = VecCreate(PETSC_COMM_SELF, &newCoordinates);CHKERRQ(ierr); 566cd0c2139SMatthew G Knepley ierr = PetscObjectSetName((PetscObject) newCoordinates, "coordinates");CHKERRQ(ierr); 567cd0c2139SMatthew G Knepley ierr = VecSetSizes(newCoordinates, coordSize, PETSC_DETERMINE);CHKERRQ(ierr); 5684e90ef8eSMatthew G. Knepley ierr = VecSetBlockSize(newCoordinates, dim);CHKERRQ(ierr); 5692eb5907fSJed Brown ierr = VecSetType(newCoordinates,VECSTANDARD);CHKERRQ(ierr); 570cd0c2139SMatthew G Knepley ierr = DMSetCoordinatesLocal(dmNew, newCoordinates);CHKERRQ(ierr); 571cd0c2139SMatthew G Knepley ierr = DMGetCoordinatesLocal(dm, &coordinates);CHKERRQ(ierr); 572cd0c2139SMatthew G Knepley ierr = VecGetArray(coordinates, &coords);CHKERRQ(ierr); 573cd0c2139SMatthew G Knepley ierr = VecGetArray(newCoordinates, &newCoords);CHKERRQ(ierr); 574f2b8cce1SMatthew G. Knepley if (hasCells) { 575f2b8cce1SMatthew G. Knepley for (c = cStart; c < cEnd; ++c) { 576f2b8cce1SMatthew G. Knepley PetscInt cNew = DMPlexShiftPoint_Internal(c, depth, depthShift), dof, off, noff, d; 577f2b8cce1SMatthew G. Knepley 578f2b8cce1SMatthew G. Knepley ierr = PetscSectionGetDof(coordSection, c, &dof);CHKERRQ(ierr); 579f2b8cce1SMatthew G. Knepley ierr = PetscSectionGetOffset(coordSection, c, &off);CHKERRQ(ierr); 580f2b8cce1SMatthew G. Knepley ierr = PetscSectionGetOffset(newCoordSection, cNew, &noff);CHKERRQ(ierr); 581f2b8cce1SMatthew G. Knepley for (d = 0; d < dof; ++d) newCoords[noff+d] = coords[off+d]; 582f2b8cce1SMatthew G. Knepley } 583f2b8cce1SMatthew G. Knepley } 584cd0c2139SMatthew G Knepley for (v = vStart; v < vEnd; ++v) { 585cd0c2139SMatthew G Knepley PetscInt dof, off, noff, d; 586cd0c2139SMatthew G Knepley 587cd0c2139SMatthew G Knepley ierr = PetscSectionGetDof(coordSection, v, &dof);CHKERRQ(ierr); 588cd0c2139SMatthew G Knepley ierr = PetscSectionGetOffset(coordSection, v, &off);CHKERRQ(ierr); 5892582d50cSToby Isaac ierr = PetscSectionGetOffset(newCoordSection, DMPlexShiftPoint_Internal(v, depth, depthShift), &noff);CHKERRQ(ierr); 590f2b8cce1SMatthew G. Knepley for (d = 0; d < dof; ++d) newCoords[noff+d] = coords[off+d]; 591cd0c2139SMatthew G Knepley } 592cd0c2139SMatthew G Knepley ierr = VecRestoreArray(coordinates, &coords);CHKERRQ(ierr); 593cd0c2139SMatthew G Knepley ierr = VecRestoreArray(newCoordinates, &newCoords);CHKERRQ(ierr); 594cd0c2139SMatthew G Knepley ierr = VecDestroy(&newCoordinates);CHKERRQ(ierr); 595cd0c2139SMatthew G Knepley ierr = PetscSectionDestroy(&newCoordSection);CHKERRQ(ierr); 596cd0c2139SMatthew G Knepley PetscFunctionReturn(0); 597cd0c2139SMatthew G Knepley } 598cd0c2139SMatthew G Knepley 599cd0c2139SMatthew G Knepley static PetscErrorCode DMPlexShiftSF_Internal(DM dm, PetscInt depthShift[], DM dmNew) 600cd0c2139SMatthew G Knepley { 6012582d50cSToby Isaac PetscInt depth = 0; 602cd0c2139SMatthew G Knepley PetscSF sfPoint, sfPointNew; 603cd0c2139SMatthew G Knepley const PetscSFNode *remotePoints; 604cd0c2139SMatthew G Knepley PetscSFNode *gremotePoints; 605cd0c2139SMatthew G Knepley const PetscInt *localPoints; 606cd0c2139SMatthew G Knepley PetscInt *glocalPoints, *newLocation, *newRemoteLocation; 607cd0c2139SMatthew G Knepley PetscInt numRoots, numLeaves, l, pStart, pEnd, totShift = 0; 608cd0c2139SMatthew G Knepley PetscErrorCode ierr; 609cd0c2139SMatthew G Knepley 610cd0c2139SMatthew G Knepley PetscFunctionBegin; 611cd0c2139SMatthew G Knepley ierr = DMPlexGetDepth(dm, &depth);CHKERRQ(ierr); 612cd0c2139SMatthew G Knepley /* Step 9: Convert pointSF */ 613cd0c2139SMatthew G Knepley ierr = DMGetPointSF(dm, &sfPoint);CHKERRQ(ierr); 614cd0c2139SMatthew G Knepley ierr = DMGetPointSF(dmNew, &sfPointNew);CHKERRQ(ierr); 615cd0c2139SMatthew G Knepley ierr = DMPlexGetChart(dm, &pStart, &pEnd);CHKERRQ(ierr); 616cd0c2139SMatthew G Knepley ierr = PetscSFGetGraph(sfPoint, &numRoots, &numLeaves, &localPoints, &remotePoints);CHKERRQ(ierr); 6176e21efdcSToby Isaac totShift = DMPlexShiftPoint_Internal(pEnd,depth,depthShift) - pEnd; 618cd0c2139SMatthew G Knepley if (numRoots >= 0) { 619dcca6d9dSJed Brown ierr = PetscMalloc2(numRoots,&newLocation,pEnd-pStart,&newRemoteLocation);CHKERRQ(ierr); 6202582d50cSToby Isaac for (l=0; l<numRoots; l++) newLocation[l] = DMPlexShiftPoint_Internal(l, depth, depthShift); 621ad227feaSJunchao Zhang ierr = PetscSFBcastBegin(sfPoint, MPIU_INT, newLocation, newRemoteLocation,MPI_REPLACE);CHKERRQ(ierr); 622ad227feaSJunchao Zhang ierr = PetscSFBcastEnd(sfPoint, MPIU_INT, newLocation, newRemoteLocation,MPI_REPLACE);CHKERRQ(ierr); 623785e854fSJed Brown ierr = PetscMalloc1(numLeaves, &glocalPoints);CHKERRQ(ierr); 624785e854fSJed Brown ierr = PetscMalloc1(numLeaves, &gremotePoints);CHKERRQ(ierr); 625cd0c2139SMatthew G Knepley for (l = 0; l < numLeaves; ++l) { 6262582d50cSToby Isaac glocalPoints[l] = DMPlexShiftPoint_Internal(localPoints[l], depth, depthShift); 627cd0c2139SMatthew G Knepley gremotePoints[l].rank = remotePoints[l].rank; 628cd0c2139SMatthew G Knepley gremotePoints[l].index = newRemoteLocation[localPoints[l]]; 629cd0c2139SMatthew G Knepley } 630cd0c2139SMatthew G Knepley ierr = PetscFree2(newLocation,newRemoteLocation);CHKERRQ(ierr); 631cd0c2139SMatthew G Knepley ierr = PetscSFSetGraph(sfPointNew, numRoots + totShift, numLeaves, glocalPoints, PETSC_OWN_POINTER, gremotePoints, PETSC_OWN_POINTER);CHKERRQ(ierr); 632cd0c2139SMatthew G Knepley } 633cd0c2139SMatthew G Knepley PetscFunctionReturn(0); 634cd0c2139SMatthew G Knepley } 635cd0c2139SMatthew G Knepley 636cd0c2139SMatthew G Knepley static PetscErrorCode DMPlexShiftLabels_Internal(DM dm, PetscInt depthShift[], DM dmNew) 637cd0c2139SMatthew G Knepley { 638cd0c2139SMatthew G Knepley PetscSF sfPoint; 639cd0c2139SMatthew G Knepley DMLabel vtkLabel, ghostLabel; 640cd0c2139SMatthew G Knepley const PetscSFNode *leafRemote; 641cd0c2139SMatthew G Knepley const PetscInt *leafLocal; 6422582d50cSToby Isaac PetscInt depth = 0, numLeaves, numLabels, l, cStart, cEnd, c, fStart, fEnd, f; 643cd0c2139SMatthew G Knepley PetscMPIInt rank; 644cd0c2139SMatthew G Knepley PetscErrorCode ierr; 645cd0c2139SMatthew G Knepley 646cd0c2139SMatthew G Knepley PetscFunctionBegin; 647cd0c2139SMatthew G Knepley ierr = DMPlexGetDepth(dm, &depth);CHKERRQ(ierr); 648cd0c2139SMatthew G Knepley /* Step 10: Convert labels */ 649c58f1c22SToby Isaac ierr = DMGetNumLabels(dm, &numLabels);CHKERRQ(ierr); 650cd0c2139SMatthew G Knepley for (l = 0; l < numLabels; ++l) { 651cd0c2139SMatthew G Knepley DMLabel label, newlabel; 652cd0c2139SMatthew G Knepley const char *lname; 653fa8e8ae5SToby Isaac PetscBool isDepth, isDim; 654cd0c2139SMatthew G Knepley IS valueIS; 655cd0c2139SMatthew G Knepley const PetscInt *values; 656cd0c2139SMatthew G Knepley PetscInt numValues, val; 657cd0c2139SMatthew G Knepley 658c58f1c22SToby Isaac ierr = DMGetLabelName(dm, l, &lname);CHKERRQ(ierr); 659cd0c2139SMatthew G Knepley ierr = PetscStrcmp(lname, "depth", &isDepth);CHKERRQ(ierr); 660cd0c2139SMatthew G Knepley if (isDepth) continue; 661fa8e8ae5SToby Isaac ierr = PetscStrcmp(lname, "dim", &isDim);CHKERRQ(ierr); 662fa8e8ae5SToby Isaac if (isDim) continue; 663c58f1c22SToby Isaac ierr = DMCreateLabel(dmNew, lname);CHKERRQ(ierr); 664c58f1c22SToby Isaac ierr = DMGetLabel(dm, lname, &label);CHKERRQ(ierr); 665c58f1c22SToby Isaac ierr = DMGetLabel(dmNew, lname, &newlabel);CHKERRQ(ierr); 66664a6a1a4SToby Isaac ierr = DMLabelGetDefaultValue(label,&val);CHKERRQ(ierr); 66764a6a1a4SToby Isaac ierr = DMLabelSetDefaultValue(newlabel,val);CHKERRQ(ierr); 668cd0c2139SMatthew G Knepley ierr = DMLabelGetValueIS(label, &valueIS);CHKERRQ(ierr); 669cd0c2139SMatthew G Knepley ierr = ISGetLocalSize(valueIS, &numValues);CHKERRQ(ierr); 670cd0c2139SMatthew G Knepley ierr = ISGetIndices(valueIS, &values);CHKERRQ(ierr); 671cd0c2139SMatthew G Knepley for (val = 0; val < numValues; ++val) { 672cd0c2139SMatthew G Knepley IS pointIS; 673cd0c2139SMatthew G Knepley const PetscInt *points; 674cd0c2139SMatthew G Knepley PetscInt numPoints, p; 675cd0c2139SMatthew G Knepley 676cd0c2139SMatthew G Knepley ierr = DMLabelGetStratumIS(label, values[val], &pointIS);CHKERRQ(ierr); 677cd0c2139SMatthew G Knepley ierr = ISGetLocalSize(pointIS, &numPoints);CHKERRQ(ierr); 678cd0c2139SMatthew G Knepley ierr = ISGetIndices(pointIS, &points);CHKERRQ(ierr); 679cd0c2139SMatthew G Knepley for (p = 0; p < numPoints; ++p) { 6802582d50cSToby Isaac const PetscInt newpoint = DMPlexShiftPoint_Internal(points[p], depth, depthShift); 681cd0c2139SMatthew G Knepley 682cd0c2139SMatthew G Knepley ierr = DMLabelSetValue(newlabel, newpoint, values[val]);CHKERRQ(ierr); 683cd0c2139SMatthew G Knepley } 684cd0c2139SMatthew G Knepley ierr = ISRestoreIndices(pointIS, &points);CHKERRQ(ierr); 685cd0c2139SMatthew G Knepley ierr = ISDestroy(&pointIS);CHKERRQ(ierr); 686cd0c2139SMatthew G Knepley } 687cd0c2139SMatthew G Knepley ierr = ISRestoreIndices(valueIS, &values);CHKERRQ(ierr); 688cd0c2139SMatthew G Knepley ierr = ISDestroy(&valueIS);CHKERRQ(ierr); 689cd0c2139SMatthew G Knepley } 690cd0c2139SMatthew G Knepley /* Step 11: Make label for output (vtk) and to mark ghost points (ghost) */ 691ffc4695bSBarry Smith ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)dm), &rank);CHKERRMPI(ierr); 692cd0c2139SMatthew G Knepley ierr = DMGetPointSF(dm, &sfPoint);CHKERRQ(ierr); 693cd0c2139SMatthew G Knepley ierr = DMPlexGetHeightStratum(dm, 0, &cStart, &cEnd);CHKERRQ(ierr); 694cd0c2139SMatthew G Knepley ierr = PetscSFGetGraph(sfPoint, NULL, &numLeaves, &leafLocal, &leafRemote);CHKERRQ(ierr); 695c58f1c22SToby Isaac ierr = DMCreateLabel(dmNew, "vtk");CHKERRQ(ierr); 696c58f1c22SToby Isaac ierr = DMCreateLabel(dmNew, "ghost");CHKERRQ(ierr); 697c58f1c22SToby Isaac ierr = DMGetLabel(dmNew, "vtk", &vtkLabel);CHKERRQ(ierr); 698c58f1c22SToby Isaac ierr = DMGetLabel(dmNew, "ghost", &ghostLabel);CHKERRQ(ierr); 699cd0c2139SMatthew G Knepley for (l = 0, c = cStart; l < numLeaves && c < cEnd; ++l, ++c) { 700cd0c2139SMatthew G Knepley for (; c < leafLocal[l] && c < cEnd; ++c) { 701cd0c2139SMatthew G Knepley ierr = DMLabelSetValue(vtkLabel, c, 1);CHKERRQ(ierr); 702cd0c2139SMatthew G Knepley } 703cd0c2139SMatthew G Knepley if (leafLocal[l] >= cEnd) break; 704cd0c2139SMatthew G Knepley if (leafRemote[l].rank == rank) { 705cd0c2139SMatthew G Knepley ierr = DMLabelSetValue(vtkLabel, c, 1);CHKERRQ(ierr); 706cd0c2139SMatthew G Knepley } else { 707cd0c2139SMatthew G Knepley ierr = DMLabelSetValue(ghostLabel, c, 2);CHKERRQ(ierr); 708cd0c2139SMatthew G Knepley } 709cd0c2139SMatthew G Knepley } 710cd0c2139SMatthew G Knepley for (; c < cEnd; ++c) { 711cd0c2139SMatthew G Knepley ierr = DMLabelSetValue(vtkLabel, c, 1);CHKERRQ(ierr); 712cd0c2139SMatthew G Knepley } 713cd0c2139SMatthew G Knepley ierr = DMPlexGetHeightStratum(dmNew, 1, &fStart, &fEnd);CHKERRQ(ierr); 714cd0c2139SMatthew G Knepley for (f = fStart; f < fEnd; ++f) { 715cd0c2139SMatthew G Knepley PetscInt numCells; 716cd0c2139SMatthew G Knepley 717cd0c2139SMatthew G Knepley ierr = DMPlexGetSupportSize(dmNew, f, &numCells);CHKERRQ(ierr); 718cd0c2139SMatthew G Knepley if (numCells < 2) { 719cd0c2139SMatthew G Knepley ierr = DMLabelSetValue(ghostLabel, f, 1);CHKERRQ(ierr); 720cd0c2139SMatthew G Knepley } else { 721cd0c2139SMatthew G Knepley const PetscInt *cells = NULL; 722cd0c2139SMatthew G Knepley PetscInt vA, vB; 723cd0c2139SMatthew G Knepley 724cd0c2139SMatthew G Knepley ierr = DMPlexGetSupport(dmNew, f, &cells);CHKERRQ(ierr); 725cd0c2139SMatthew G Knepley ierr = DMLabelGetValue(vtkLabel, cells[0], &vA);CHKERRQ(ierr); 726cd0c2139SMatthew G Knepley ierr = DMLabelGetValue(vtkLabel, cells[1], &vB);CHKERRQ(ierr); 72790664b96SToby Isaac if (vA != 1 && vB != 1) {ierr = DMLabelSetValue(ghostLabel, f, 1);CHKERRQ(ierr);} 728cd0c2139SMatthew G Knepley } 729cd0c2139SMatthew G Knepley } 730cd0c2139SMatthew G Knepley PetscFunctionReturn(0); 731cd0c2139SMatthew G Knepley } 732cd0c2139SMatthew G Knepley 733ca04dac2SToby Isaac static PetscErrorCode DMPlexShiftTree_Internal(DM dm, PetscInt depthShift[], DM dmNew) 734ca04dac2SToby Isaac { 735ca04dac2SToby Isaac DM refTree; 736ca04dac2SToby Isaac PetscSection pSec; 737ca04dac2SToby Isaac PetscInt *parents, *childIDs; 738ca04dac2SToby Isaac PetscErrorCode ierr; 739ca04dac2SToby Isaac 740ca04dac2SToby Isaac PetscFunctionBegin; 741ca04dac2SToby Isaac ierr = DMPlexGetReferenceTree(dm,&refTree);CHKERRQ(ierr); 742ca04dac2SToby Isaac ierr = DMPlexSetReferenceTree(dmNew,refTree);CHKERRQ(ierr); 743ca04dac2SToby Isaac ierr = DMPlexGetTree(dm,&pSec,&parents,&childIDs,NULL,NULL);CHKERRQ(ierr); 744ca04dac2SToby Isaac if (pSec) { 7452582d50cSToby Isaac PetscInt p, pStart, pEnd, *parentsShifted, pStartShifted, pEndShifted, depth; 746fb4630b5SToby Isaac PetscInt *childIDsShifted; 747ca04dac2SToby Isaac PetscSection pSecShifted; 748ca04dac2SToby Isaac 749ca04dac2SToby Isaac ierr = PetscSectionGetChart(pSec,&pStart,&pEnd);CHKERRQ(ierr); 750ca04dac2SToby Isaac ierr = DMPlexGetDepth(dm,&depth);CHKERRQ(ierr); 7512582d50cSToby Isaac pStartShifted = DMPlexShiftPoint_Internal(pStart,depth,depthShift); 7522582d50cSToby Isaac pEndShifted = DMPlexShiftPoint_Internal(pEnd,depth,depthShift); 753fb4630b5SToby Isaac ierr = PetscMalloc2(pEndShifted - pStartShifted,&parentsShifted,pEndShifted-pStartShifted,&childIDsShifted);CHKERRQ(ierr); 754ca04dac2SToby Isaac ierr = PetscSectionCreate(PetscObjectComm((PetscObject)dmNew),&pSecShifted);CHKERRQ(ierr); 755ca04dac2SToby Isaac ierr = PetscSectionSetChart(pSecShifted,pStartShifted,pEndShifted);CHKERRQ(ierr); 756ca04dac2SToby Isaac for (p = pStartShifted; p < pEndShifted; p++) { 757fb4630b5SToby Isaac /* start off assuming no children */ 758fb4630b5SToby Isaac ierr = PetscSectionSetDof(pSecShifted,p,0);CHKERRQ(ierr); 759fb4630b5SToby Isaac } 760fb4630b5SToby Isaac for (p = pStart; p < pEnd; p++) { 761fb4630b5SToby Isaac PetscInt dof; 762fb4630b5SToby Isaac PetscInt pNew = DMPlexShiftPoint_Internal(p,depth,depthShift); 763ca04dac2SToby Isaac 764ca04dac2SToby Isaac ierr = PetscSectionGetDof(pSec,p,&dof);CHKERRQ(ierr); 765fb4630b5SToby Isaac ierr = PetscSectionSetDof(pSecShifted,pNew,dof);CHKERRQ(ierr); 766ca04dac2SToby Isaac } 767ca04dac2SToby Isaac ierr = PetscSectionSetUp(pSecShifted);CHKERRQ(ierr); 768fb4630b5SToby Isaac for (p = pStart; p < pEnd; p++) { 769fb4630b5SToby Isaac PetscInt dof; 770fb4630b5SToby Isaac PetscInt pNew = DMPlexShiftPoint_Internal(p,depth,depthShift); 771fb4630b5SToby Isaac 772fb4630b5SToby Isaac ierr = PetscSectionGetDof(pSec,p,&dof);CHKERRQ(ierr); 773fb4630b5SToby Isaac if (dof) { 774fb4630b5SToby Isaac PetscInt off, offNew; 775fb4630b5SToby Isaac 776fb4630b5SToby Isaac ierr = PetscSectionGetOffset(pSec,p,&off);CHKERRQ(ierr); 777fb4630b5SToby Isaac ierr = PetscSectionGetOffset(pSecShifted,pNew,&offNew);CHKERRQ(ierr); 778fb4630b5SToby Isaac parentsShifted[offNew] = DMPlexShiftPoint_Internal(parents[off],depth,depthShift); 779fb4630b5SToby Isaac childIDsShifted[offNew] = childIDs[off]; 780fb4630b5SToby Isaac } 781fb4630b5SToby Isaac } 782fb4630b5SToby Isaac ierr = DMPlexSetTree(dmNew,pSecShifted,parentsShifted,childIDsShifted);CHKERRQ(ierr); 783fb4630b5SToby Isaac ierr = PetscFree2(parentsShifted,childIDsShifted);CHKERRQ(ierr); 784e6885bbbSToby Isaac ierr = PetscSectionDestroy(&pSecShifted);CHKERRQ(ierr); 785ca04dac2SToby Isaac } 786ca04dac2SToby Isaac PetscFunctionReturn(0); 787ca04dac2SToby Isaac } 788ca04dac2SToby Isaac 789cd0c2139SMatthew G Knepley static PetscErrorCode DMPlexConstructGhostCells_Internal(DM dm, DMLabel label, PetscInt *numGhostCells, DM gdm) 790cd0c2139SMatthew G Knepley { 791da97024aSMatthew G. Knepley PetscSF sf; 792cd0c2139SMatthew G Knepley IS valueIS; 793da97024aSMatthew G. Knepley const PetscInt *values, *leaves; 794cd0c2139SMatthew G Knepley PetscInt *depthShift; 7952582d50cSToby Isaac PetscInt d, depth = 0, nleaves, loc, Ng, numFS, fs, fStart, fEnd, ghostCell, cEnd, c; 79690b157c4SStefano Zampini PetscBool isper; 79790b157c4SStefano Zampini const PetscReal *maxCell, *L; 79890b157c4SStefano Zampini const DMBoundaryType *bd; 799cd0c2139SMatthew G Knepley PetscErrorCode ierr; 800cd0c2139SMatthew G Knepley 801cd0c2139SMatthew G Knepley PetscFunctionBegin; 802da97024aSMatthew G. Knepley ierr = DMGetPointSF(dm, &sf);CHKERRQ(ierr); 803da97024aSMatthew G. Knepley ierr = PetscSFGetGraph(sf, NULL, &nleaves, &leaves, NULL);CHKERRQ(ierr); 804da97024aSMatthew G. Knepley nleaves = PetscMax(0, nleaves); 80546c796b9SMatthew G. Knepley ierr = DMPlexGetHeightStratum(dm, 1, &fStart, &fEnd);CHKERRQ(ierr); 806cd0c2139SMatthew G Knepley /* Count ghost cells */ 807cd0c2139SMatthew G Knepley ierr = DMLabelGetValueIS(label, &valueIS);CHKERRQ(ierr); 808cd0c2139SMatthew G Knepley ierr = ISGetLocalSize(valueIS, &numFS);CHKERRQ(ierr); 809cd0c2139SMatthew G Knepley ierr = ISGetIndices(valueIS, &values);CHKERRQ(ierr); 8104a6cfa73SMatthew G. Knepley Ng = 0; 811cd0c2139SMatthew G Knepley for (fs = 0; fs < numFS; ++fs) { 81246c796b9SMatthew G. Knepley IS faceIS; 81346c796b9SMatthew G. Knepley const PetscInt *faces; 81446c796b9SMatthew G. Knepley PetscInt numFaces, f, numBdFaces = 0; 815cd0c2139SMatthew G Knepley 81646c796b9SMatthew G. Knepley ierr = DMLabelGetStratumIS(label, values[fs], &faceIS);CHKERRQ(ierr); 81746c796b9SMatthew G. Knepley ierr = ISGetLocalSize(faceIS, &numFaces);CHKERRQ(ierr); 81846c796b9SMatthew G. Knepley ierr = ISGetIndices(faceIS, &faces);CHKERRQ(ierr); 81946c796b9SMatthew G. Knepley for (f = 0; f < numFaces; ++f) { 820ca04dac2SToby Isaac PetscInt numChildren; 821ca04dac2SToby Isaac 822da97024aSMatthew G. Knepley ierr = PetscFindInt(faces[f], nleaves, leaves, &loc);CHKERRQ(ierr); 823ca04dac2SToby Isaac ierr = DMPlexGetTreeChildren(dm,faces[f],&numChildren,NULL);CHKERRQ(ierr); 824ca04dac2SToby Isaac /* non-local and ancestors points don't get to register ghosts */ 825ca04dac2SToby Isaac if (loc >= 0 || numChildren) continue; 82646c796b9SMatthew G. Knepley if ((faces[f] >= fStart) && (faces[f] < fEnd)) ++numBdFaces; 82746c796b9SMatthew G. Knepley } 8284a6cfa73SMatthew G. Knepley Ng += numBdFaces; 829ba2698f1SMatthew G. Knepley ierr = ISRestoreIndices(faceIS, &faces);CHKERRQ(ierr); 83046c796b9SMatthew G. Knepley ierr = ISDestroy(&faceIS);CHKERRQ(ierr); 831cd0c2139SMatthew G Knepley } 832cd0c2139SMatthew G Knepley ierr = DMPlexGetDepth(dm, &depth);CHKERRQ(ierr); 8332582d50cSToby Isaac ierr = PetscMalloc1(2*(depth+1), &depthShift);CHKERRQ(ierr); 8342582d50cSToby Isaac for (d = 0; d <= depth; d++) { 83559eef20bSToby Isaac PetscInt dEnd; 8362582d50cSToby Isaac 8370974a383SToby Isaac ierr = DMPlexGetDepthStratum(dm,d,NULL,&dEnd);CHKERRQ(ierr); 83859eef20bSToby Isaac depthShift[2*d] = dEnd; 8392582d50cSToby Isaac depthShift[2*d+1] = 0; 8402582d50cSToby Isaac } 8412582d50cSToby Isaac if (depth >= 0) depthShift[2*depth+1] = Ng; 8422582d50cSToby Isaac ierr = DMPlexShiftPointSetUp_Internal(depth,depthShift);CHKERRQ(ierr); 843cd0c2139SMatthew G Knepley ierr = DMPlexShiftSizes_Internal(dm, depthShift, gdm);CHKERRQ(ierr); 844cd0c2139SMatthew G Knepley /* Step 3: Set cone/support sizes for new points */ 845cd0c2139SMatthew G Knepley ierr = DMPlexGetHeightStratum(dm, 0, NULL, &cEnd);CHKERRQ(ierr); 8464a6cfa73SMatthew G. Knepley for (c = cEnd; c < cEnd + Ng; ++c) { 847cd0c2139SMatthew G Knepley ierr = DMPlexSetConeSize(gdm, c, 1);CHKERRQ(ierr); 848cd0c2139SMatthew G Knepley } 849cd0c2139SMatthew G Knepley for (fs = 0; fs < numFS; ++fs) { 850cd0c2139SMatthew G Knepley IS faceIS; 851cd0c2139SMatthew G Knepley const PetscInt *faces; 852cd0c2139SMatthew G Knepley PetscInt numFaces, f; 853cd0c2139SMatthew G Knepley 854cd0c2139SMatthew G Knepley ierr = DMLabelGetStratumIS(label, values[fs], &faceIS);CHKERRQ(ierr); 855cd0c2139SMatthew G Knepley ierr = ISGetLocalSize(faceIS, &numFaces);CHKERRQ(ierr); 856cd0c2139SMatthew G Knepley ierr = ISGetIndices(faceIS, &faces);CHKERRQ(ierr); 857cd0c2139SMatthew G Knepley for (f = 0; f < numFaces; ++f) { 858ca04dac2SToby Isaac PetscInt size, numChildren; 859cd0c2139SMatthew G Knepley 860da97024aSMatthew G. Knepley ierr = PetscFindInt(faces[f], nleaves, leaves, &loc);CHKERRQ(ierr); 861ca04dac2SToby Isaac ierr = DMPlexGetTreeChildren(dm,faces[f],&numChildren,NULL);CHKERRQ(ierr); 862ca04dac2SToby Isaac if (loc >= 0 || numChildren) continue; 86346c796b9SMatthew G. Knepley if ((faces[f] < fStart) || (faces[f] >= fEnd)) continue; 864cd0c2139SMatthew G Knepley ierr = DMPlexGetSupportSize(dm, faces[f], &size);CHKERRQ(ierr); 8654553fd90SToby Isaac if (size != 1) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "DM has boundary face %d with %d support cells", faces[f], size); 8664a6cfa73SMatthew G. Knepley ierr = DMPlexSetSupportSize(gdm, faces[f] + Ng, 2);CHKERRQ(ierr); 867cd0c2139SMatthew G Knepley } 868cd0c2139SMatthew G Knepley ierr = ISRestoreIndices(faceIS, &faces);CHKERRQ(ierr); 869cd0c2139SMatthew G Knepley ierr = ISDestroy(&faceIS);CHKERRQ(ierr); 870cd0c2139SMatthew G Knepley } 871cd0c2139SMatthew G Knepley /* Step 4: Setup ghosted DM */ 872cd0c2139SMatthew G Knepley ierr = DMSetUp(gdm);CHKERRQ(ierr); 873cd0c2139SMatthew G Knepley ierr = DMPlexShiftPoints_Internal(dm, depthShift, gdm);CHKERRQ(ierr); 874cd0c2139SMatthew G Knepley /* Step 6: Set cones and supports for new points */ 875cd0c2139SMatthew G Knepley ghostCell = cEnd; 876cd0c2139SMatthew G Knepley for (fs = 0; fs < numFS; ++fs) { 877cd0c2139SMatthew G Knepley IS faceIS; 878cd0c2139SMatthew G Knepley const PetscInt *faces; 879cd0c2139SMatthew G Knepley PetscInt numFaces, f; 880cd0c2139SMatthew G Knepley 881cd0c2139SMatthew G Knepley ierr = DMLabelGetStratumIS(label, values[fs], &faceIS);CHKERRQ(ierr); 882cd0c2139SMatthew G Knepley ierr = ISGetLocalSize(faceIS, &numFaces);CHKERRQ(ierr); 883cd0c2139SMatthew G Knepley ierr = ISGetIndices(faceIS, &faces);CHKERRQ(ierr); 88446c796b9SMatthew G. Knepley for (f = 0; f < numFaces; ++f) { 885ca04dac2SToby Isaac PetscInt newFace = faces[f] + Ng, numChildren; 886cd0c2139SMatthew G Knepley 887da97024aSMatthew G. Knepley ierr = PetscFindInt(faces[f], nleaves, leaves, &loc);CHKERRQ(ierr); 888ca04dac2SToby Isaac ierr = DMPlexGetTreeChildren(dm,faces[f],&numChildren,NULL);CHKERRQ(ierr); 889ca04dac2SToby Isaac if (loc >= 0 || numChildren) continue; 89046c796b9SMatthew G. Knepley if ((faces[f] < fStart) || (faces[f] >= fEnd)) continue; 891cd0c2139SMatthew G Knepley ierr = DMPlexSetCone(gdm, ghostCell, &newFace);CHKERRQ(ierr); 892cd0c2139SMatthew G Knepley ierr = DMPlexInsertSupport(gdm, newFace, 1, ghostCell);CHKERRQ(ierr); 89346c796b9SMatthew G. Knepley ++ghostCell; 894cd0c2139SMatthew G Knepley } 895cd0c2139SMatthew G Knepley ierr = ISRestoreIndices(faceIS, &faces);CHKERRQ(ierr); 896cd0c2139SMatthew G Knepley ierr = ISDestroy(&faceIS);CHKERRQ(ierr); 897cd0c2139SMatthew G Knepley } 898cd0c2139SMatthew G Knepley ierr = ISRestoreIndices(valueIS, &values);CHKERRQ(ierr); 899cd0c2139SMatthew G Knepley ierr = ISDestroy(&valueIS);CHKERRQ(ierr); 900cd0c2139SMatthew G Knepley ierr = DMPlexShiftCoordinates_Internal(dm, depthShift, gdm);CHKERRQ(ierr); 901cd0c2139SMatthew G Knepley ierr = DMPlexShiftSF_Internal(dm, depthShift, gdm);CHKERRQ(ierr); 902cd0c2139SMatthew G Knepley ierr = DMPlexShiftLabels_Internal(dm, depthShift, gdm);CHKERRQ(ierr); 903ca04dac2SToby Isaac ierr = DMPlexShiftTree_Internal(dm, depthShift, gdm);CHKERRQ(ierr); 904cd0c2139SMatthew G Knepley ierr = PetscFree(depthShift);CHKERRQ(ierr); 905412e9a14SMatthew G. Knepley for (c = cEnd; c < cEnd + Ng; ++c) { 906412e9a14SMatthew G. Knepley ierr = DMPlexSetCellType(gdm, c, DM_POLYTOPE_FV_GHOST);CHKERRQ(ierr); 907412e9a14SMatthew G. Knepley } 908966c7b3fSMatthew G. Knepley /* Step 7: Periodicity */ 90990b157c4SStefano Zampini ierr = DMGetPeriodicity(dm, &isper, &maxCell, &L, &bd);CHKERRQ(ierr); 91090b157c4SStefano Zampini ierr = DMSetPeriodicity(gdm, isper, maxCell, L, bd);CHKERRQ(ierr); 9114a6cfa73SMatthew G. Knepley if (numGhostCells) *numGhostCells = Ng; 912cd0c2139SMatthew G Knepley PetscFunctionReturn(0); 913cd0c2139SMatthew G Knepley } 914cd0c2139SMatthew G Knepley 915cd0c2139SMatthew G Knepley /*@C 916cd0c2139SMatthew G Knepley DMPlexConstructGhostCells - Construct ghost cells which connect to every boundary face 917cd0c2139SMatthew G Knepley 918cd0c2139SMatthew G Knepley Collective on dm 919cd0c2139SMatthew G Knepley 920cd0c2139SMatthew G Knepley Input Parameters: 921cd0c2139SMatthew G Knepley + dm - The original DM 922cd0c2139SMatthew G Knepley - labelName - The label specifying the boundary faces, or "Face Sets" if this is NULL 923cd0c2139SMatthew G Knepley 924cd0c2139SMatthew G Knepley Output Parameters: 925cd0c2139SMatthew G Knepley + numGhostCells - The number of ghost cells added to the DM 926cd0c2139SMatthew G Knepley - dmGhosted - The new DM 927cd0c2139SMatthew G Knepley 928cd0c2139SMatthew G Knepley Note: If no label exists of that name, one will be created marking all boundary faces 929cd0c2139SMatthew G Knepley 930cd0c2139SMatthew G Knepley Level: developer 931cd0c2139SMatthew G Knepley 932cd0c2139SMatthew G Knepley .seealso: DMCreate() 93331266bc0SMatthew G. Knepley @*/ 934cd0c2139SMatthew G Knepley PetscErrorCode DMPlexConstructGhostCells(DM dm, const char labelName[], PetscInt *numGhostCells, DM *dmGhosted) 935cd0c2139SMatthew G Knepley { 936cd0c2139SMatthew G Knepley DM gdm; 937cd0c2139SMatthew G Knepley DMLabel label; 938cd0c2139SMatthew G Knepley const char *name = labelName ? labelName : "Face Sets"; 939412e9a14SMatthew G. Knepley PetscInt dim, Ng = 0; 940b0441da4SMatthew G. Knepley PetscBool useCone, useClosure; 941cd0c2139SMatthew G Knepley PetscErrorCode ierr; 942cd0c2139SMatthew G Knepley 943cd0c2139SMatthew G Knepley PetscFunctionBegin; 944cd0c2139SMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 9454a6cfa73SMatthew G. Knepley if (numGhostCells) PetscValidPointer(numGhostCells, 3); 946cd0c2139SMatthew G Knepley PetscValidPointer(dmGhosted, 4); 947cd0c2139SMatthew G Knepley ierr = DMCreate(PetscObjectComm((PetscObject)dm), &gdm);CHKERRQ(ierr); 948cd0c2139SMatthew G Knepley ierr = DMSetType(gdm, DMPLEX);CHKERRQ(ierr); 949c73cfb54SMatthew G. Knepley ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr); 950c73cfb54SMatthew G. Knepley ierr = DMSetDimension(gdm, dim);CHKERRQ(ierr); 951b0441da4SMatthew G. Knepley ierr = DMGetBasicAdjacency(dm, &useCone, &useClosure);CHKERRQ(ierr); 952b0441da4SMatthew G. Knepley ierr = DMSetBasicAdjacency(gdm, useCone, useClosure);CHKERRQ(ierr); 953c58f1c22SToby Isaac ierr = DMGetLabel(dm, name, &label);CHKERRQ(ierr); 954cd0c2139SMatthew G Knepley if (!label) { 955cd0c2139SMatthew G Knepley /* Get label for boundary faces */ 956c58f1c22SToby Isaac ierr = DMCreateLabel(dm, name);CHKERRQ(ierr); 957c58f1c22SToby Isaac ierr = DMGetLabel(dm, name, &label);CHKERRQ(ierr); 958e752be1aSMatthew G. Knepley ierr = DMPlexMarkBoundaryFaces(dm, 1, label);CHKERRQ(ierr); 959cd0c2139SMatthew G Knepley } 960d80ece95SMatthew G. Knepley ierr = DMPlexConstructGhostCells_Internal(dm, label, &Ng, gdm);CHKERRQ(ierr); 961b0441da4SMatthew G. Knepley ierr = DMCopyDisc(dm, gdm);CHKERRQ(ierr); 962cad26855SMatthew G. Knepley gdm->setfromoptionscalled = dm->setfromoptionscalled; 963d80ece95SMatthew G. Knepley if (numGhostCells) *numGhostCells = Ng; 964cd0c2139SMatthew G Knepley *dmGhosted = gdm; 965cd0c2139SMatthew G Knepley PetscFunctionReturn(0); 966cd0c2139SMatthew G Knepley } 967cd0c2139SMatthew G Knepley 968607ab7a9SMatthew G. Knepley /* 969faedd622SMatthew G. Knepley We are adding three kinds of points here: 970607ab7a9SMatthew G. Knepley Replicated: Copies of points which exist in the mesh, such as vertices identified across a fault 971faedd622SMatthew G. Knepley Non-replicated: Points which exist on the fault, but are not replicated 972607ab7a9SMatthew G. Knepley Hybrid: Entirely new points, such as cohesive cells 973a6ae58d1SMatthew G. Knepley 974a6ae58d1SMatthew G. Knepley When creating subsequent cohesive cells, we shift the old hybrid cells to the end of the numbering at 975a6ae58d1SMatthew G. Knepley each depth so that the new split/hybrid points can be inserted as a block. 976607ab7a9SMatthew G. Knepley */ 9777db7e0a7SMatthew G. Knepley static PetscErrorCode DMPlexConstructCohesiveCells_Internal(DM dm, DMLabel label, DMLabel splitLabel, DM sdm) 978cd0c2139SMatthew G Knepley { 979cd0c2139SMatthew G Knepley MPI_Comm comm; 980607ab7a9SMatthew G. Knepley IS valueIS; 981607ab7a9SMatthew G. Knepley PetscInt numSP = 0; /* The number of depths for which we have replicated points */ 982607ab7a9SMatthew G. Knepley const PetscInt *values; /* List of depths for which we have replicated points */ 98318c5995bSMatthew G. Knepley IS *splitIS; 98418c5995bSMatthew G. Knepley IS *unsplitIS; 985607ab7a9SMatthew G. Knepley PetscInt *numSplitPoints; /* The number of replicated points at each depth */ 98618c5995bSMatthew G. Knepley PetscInt *numUnsplitPoints; /* The number of non-replicated points at each depth which still give rise to hybrid points */ 98736dbac82SMatthew G. Knepley PetscInt *numHybridPoints; /* The number of new hybrid points at each depth */ 98836dbac82SMatthew G. Knepley PetscInt *numHybridPointsOld; /* The number of existing hybrid points at each depth */ 989607ab7a9SMatthew G. Knepley const PetscInt **splitPoints; /* Replicated points for each depth */ 99018c5995bSMatthew G. Knepley const PetscInt **unsplitPoints; /* Non-replicated points for each depth */ 991cd0c2139SMatthew G Knepley PetscSection coordSection; 992cd0c2139SMatthew G Knepley Vec coordinates; 993cd0c2139SMatthew G Knepley PetscScalar *coords; 994a6ae58d1SMatthew G. Knepley PetscInt *depthMax; /* The first hybrid point at each depth in the original mesh */ 995a6ae58d1SMatthew G. Knepley PetscInt *depthEnd; /* The point limit at each depth in the original mesh */ 996607ab7a9SMatthew G. Knepley PetscInt *depthShift; /* Number of replicated+hybrid points at each depth */ 997607ab7a9SMatthew G. Knepley PetscInt *pMaxNew; /* The first replicated point at each depth in the new mesh, hybrids come after this */ 998607ab7a9SMatthew G. Knepley PetscInt *coneNew, *coneONew, *supportNew; 99918c5995bSMatthew G. Knepley PetscInt shift = 100, shift2 = 200, depth = 0, dep, dim, d, sp, maxConeSize, maxSupportSize, maxConeSizeNew, maxSupportSizeNew, numLabels, vStart, vEnd, pEnd, p, v; 1000cd0c2139SMatthew G Knepley PetscErrorCode ierr; 1001cd0c2139SMatthew G Knepley 1002cd0c2139SMatthew G Knepley PetscFunctionBegin; 1003cd0c2139SMatthew G Knepley ierr = PetscObjectGetComm((PetscObject)dm,&comm);CHKERRQ(ierr); 1004c73cfb54SMatthew G. Knepley ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr); 1005607ab7a9SMatthew G. Knepley ierr = DMPlexGetDepth(dm, &depth);CHKERRQ(ierr); 1006fd4b9f15SMatthew G. Knepley ierr = DMPlexGetDepthStratum(dm, 0, &vStart, &vEnd);CHKERRQ(ierr); 1007412e9a14SMatthew G. Knepley /* We do not want this label automatically computed, instead we compute it here */ 1008412e9a14SMatthew G. Knepley ierr = DMCreateLabel(sdm, "celltype");CHKERRQ(ierr); 1009cd0c2139SMatthew G Knepley /* Count split points and add cohesive cells */ 1010607ab7a9SMatthew G. Knepley ierr = DMPlexGetMaxSizes(dm, &maxConeSize, &maxSupportSize);CHKERRQ(ierr); 10112582d50cSToby Isaac ierr = PetscMalloc5(depth+1,&depthMax,depth+1,&depthEnd,2*(depth+1),&depthShift,depth+1,&pMaxNew,depth+1,&numHybridPointsOld);CHKERRQ(ierr); 1012dcca6d9dSJed Brown ierr = PetscMalloc7(depth+1,&splitIS,depth+1,&unsplitIS,depth+1,&numSplitPoints,depth+1,&numUnsplitPoints,depth+1,&numHybridPoints,depth+1,&splitPoints,depth+1,&unsplitPoints);CHKERRQ(ierr); 1013607ab7a9SMatthew G. Knepley for (d = 0; d <= depth; ++d) { 1014607ab7a9SMatthew G. Knepley ierr = DMPlexGetDepthStratum(dm, d, NULL, &pMaxNew[d]);CHKERRQ(ierr); 1015412e9a14SMatthew G. Knepley ierr = DMPlexGetTensorPrismBounds_Internal(dm, d, &depthMax[d], NULL);CHKERRQ(ierr); 1016a6ae58d1SMatthew G. Knepley depthEnd[d] = pMaxNew[d]; 1017a6ae58d1SMatthew G. Knepley depthMax[d] = depthMax[d] < 0 ? depthEnd[d] : depthMax[d]; 1018607ab7a9SMatthew G. Knepley numSplitPoints[d] = 0; 101918c5995bSMatthew G. Knepley numUnsplitPoints[d] = 0; 1020607ab7a9SMatthew G. Knepley numHybridPoints[d] = 0; 1021a6ae58d1SMatthew G. Knepley numHybridPointsOld[d] = depthMax[d] < 0 ? 0 : depthEnd[d] - depthMax[d]; 1022607ab7a9SMatthew G. Knepley splitPoints[d] = NULL; 102318c5995bSMatthew G. Knepley unsplitPoints[d] = NULL; 102418c5995bSMatthew G. Knepley splitIS[d] = NULL; 102518c5995bSMatthew G. Knepley unsplitIS[d] = NULL; 102659eef20bSToby Isaac /* we are shifting the existing hybrid points with the stratum behind them, so 102759eef20bSToby Isaac * the split comes at the end of the normal points, i.e., at depthMax[d] */ 102859eef20bSToby Isaac depthShift[2*d] = depthMax[d]; 102959eef20bSToby Isaac depthShift[2*d+1] = 0; 1030607ab7a9SMatthew G. Knepley } 1031cd0c2139SMatthew G Knepley if (label) { 1032cd0c2139SMatthew G Knepley ierr = DMLabelGetValueIS(label, &valueIS);CHKERRQ(ierr); 1033cd0c2139SMatthew G Knepley ierr = ISGetLocalSize(valueIS, &numSP);CHKERRQ(ierr); 1034cd0c2139SMatthew G Knepley ierr = ISGetIndices(valueIS, &values);CHKERRQ(ierr); 1035cd0c2139SMatthew G Knepley } 1036cd0c2139SMatthew G Knepley for (sp = 0; sp < numSP; ++sp) { 1037cd0c2139SMatthew G Knepley const PetscInt dep = values[sp]; 1038cd0c2139SMatthew G Knepley 1039cd0c2139SMatthew G Knepley if ((dep < 0) || (dep > depth)) continue; 104018c5995bSMatthew G. Knepley ierr = DMLabelGetStratumIS(label, dep, &splitIS[dep]);CHKERRQ(ierr); 104118c5995bSMatthew G. Knepley if (splitIS[dep]) { 104218c5995bSMatthew G. Knepley ierr = ISGetLocalSize(splitIS[dep], &numSplitPoints[dep]);CHKERRQ(ierr); 104318c5995bSMatthew G. Knepley ierr = ISGetIndices(splitIS[dep], &splitPoints[dep]);CHKERRQ(ierr); 104418c5995bSMatthew G. Knepley } 104518c5995bSMatthew G. Knepley ierr = DMLabelGetStratumIS(label, shift2+dep, &unsplitIS[dep]);CHKERRQ(ierr); 104618c5995bSMatthew G. Knepley if (unsplitIS[dep]) { 104718c5995bSMatthew G. Knepley ierr = ISGetLocalSize(unsplitIS[dep], &numUnsplitPoints[dep]);CHKERRQ(ierr); 104818c5995bSMatthew G. Knepley ierr = ISGetIndices(unsplitIS[dep], &unsplitPoints[dep]);CHKERRQ(ierr); 1049cd0c2139SMatthew G Knepley } 1050cd0c2139SMatthew G Knepley } 1051607ab7a9SMatthew G. Knepley /* Calculate number of hybrid points */ 105218c5995bSMatthew G. Knepley for (d = 1; d <= depth; ++d) numHybridPoints[d] = numSplitPoints[d-1] + numUnsplitPoints[d-1]; /* There is a hybrid cell/face/edge for every split face/edge/vertex */ 10532582d50cSToby Isaac for (d = 0; d <= depth; ++d) depthShift[2*d+1] = numSplitPoints[d] + numHybridPoints[d]; 10543d3eaba7SBarry Smith ierr = DMPlexShiftPointSetUp_Internal(depth,depthShift);CHKERRQ(ierr); 105559eef20bSToby Isaac /* the end of the points in this stratum that come before the new points: 105659eef20bSToby Isaac * shifting pMaxNew[d] gets the new start of the next stratum, then count back the old hybrid points and the newly 105759eef20bSToby Isaac * added points */ 10582582d50cSToby Isaac for (d = 0; d <= depth; ++d) pMaxNew[d] = DMPlexShiftPoint_Internal(pMaxNew[d],depth,depthShift) - (numHybridPointsOld[d] + numSplitPoints[d] + numHybridPoints[d]); 1059cd0c2139SMatthew G Knepley ierr = DMPlexShiftSizes_Internal(dm, depthShift, sdm);CHKERRQ(ierr); 1060cd0c2139SMatthew G Knepley /* Step 3: Set cone/support sizes for new points */ 1061cd0c2139SMatthew G Knepley for (dep = 0; dep <= depth; ++dep) { 1062cd0c2139SMatthew G Knepley for (p = 0; p < numSplitPoints[dep]; ++p) { 1063cd0c2139SMatthew G Knepley const PetscInt oldp = splitPoints[dep][p]; 10642582d50cSToby Isaac const PetscInt newp = DMPlexShiftPoint_Internal(oldp, depth, depthShift) /*oldp + depthOffset[dep]*/; 10654c367dbcSMatthew G. Knepley const PetscInt splitp = p + pMaxNew[dep]; 1066cd0c2139SMatthew G Knepley const PetscInt *support; 10674c367dbcSMatthew G. Knepley PetscInt coneSize, supportSize, qf, qn, qp, e; 1068cd0c2139SMatthew G Knepley 1069cd0c2139SMatthew G Knepley ierr = DMPlexGetConeSize(dm, oldp, &coneSize);CHKERRQ(ierr); 1070cd0c2139SMatthew G Knepley ierr = DMPlexSetConeSize(sdm, splitp, coneSize);CHKERRQ(ierr); 1071cd0c2139SMatthew G Knepley ierr = DMPlexGetSupportSize(dm, oldp, &supportSize);CHKERRQ(ierr); 1072cd0c2139SMatthew G Knepley ierr = DMPlexSetSupportSize(sdm, splitp, supportSize);CHKERRQ(ierr); 1073cd0c2139SMatthew G Knepley if (dep == depth-1) { 10744c367dbcSMatthew G. Knepley const PetscInt hybcell = p + pMaxNew[dep+1] + numSplitPoints[dep+1]; 10754c367dbcSMatthew G. Knepley 1076cd0c2139SMatthew G Knepley /* Add cohesive cells, they are prisms */ 10774c367dbcSMatthew G. Knepley ierr = DMPlexSetConeSize(sdm, hybcell, 2 + coneSize);CHKERRQ(ierr); 1078412e9a14SMatthew G. Knepley switch (coneSize) { 1079412e9a14SMatthew G. Knepley case 2: ierr = DMPlexSetCellType(sdm, hybcell, DM_POLYTOPE_SEG_PRISM_TENSOR);CHKERRQ(ierr);break; 1080412e9a14SMatthew G. Knepley case 3: ierr = DMPlexSetCellType(sdm, hybcell, DM_POLYTOPE_TRI_PRISM_TENSOR);CHKERRQ(ierr);break; 1081412e9a14SMatthew G. Knepley case 4: ierr = DMPlexSetCellType(sdm, hybcell, DM_POLYTOPE_QUAD_PRISM_TENSOR);CHKERRQ(ierr);break; 1082412e9a14SMatthew G. Knepley } 1083cd0c2139SMatthew G Knepley } else if (dep == 0) { 10844c367dbcSMatthew G. Knepley const PetscInt hybedge = p + pMaxNew[dep+1] + numSplitPoints[dep+1]; 1085cd0c2139SMatthew G Knepley 1086cd0c2139SMatthew G Knepley ierr = DMPlexGetSupport(dm, oldp, &support);CHKERRQ(ierr); 10874c367dbcSMatthew G. Knepley for (e = 0, qn = 0, qp = 0, qf = 0; e < supportSize; ++e) { 1088cd0c2139SMatthew G Knepley PetscInt val; 1089cd0c2139SMatthew G Knepley 1090cd0c2139SMatthew G Knepley ierr = DMLabelGetValue(label, support[e], &val);CHKERRQ(ierr); 10914c367dbcSMatthew G. Knepley if (val == 1) ++qf; 10924c367dbcSMatthew G. Knepley if ((val == 1) || (val == (shift + 1))) ++qn; 10934c367dbcSMatthew G. Knepley if ((val == 1) || (val == -(shift + 1))) ++qp; 1094cd0c2139SMatthew G Knepley } 10954c367dbcSMatthew G. Knepley /* Split old vertex: Edges into original vertex and new cohesive edge */ 10964c367dbcSMatthew G. Knepley ierr = DMPlexSetSupportSize(sdm, newp, qn+1);CHKERRQ(ierr); 10974c367dbcSMatthew G. Knepley /* Split new vertex: Edges into split vertex and new cohesive edge */ 10984c367dbcSMatthew G. Knepley ierr = DMPlexSetSupportSize(sdm, splitp, qp+1);CHKERRQ(ierr); 10994c367dbcSMatthew G. Knepley /* Add hybrid edge */ 11004c367dbcSMatthew G. Knepley ierr = DMPlexSetConeSize(sdm, hybedge, 2);CHKERRQ(ierr); 11014c367dbcSMatthew G. Knepley ierr = DMPlexSetSupportSize(sdm, hybedge, qf);CHKERRQ(ierr); 1102412e9a14SMatthew G. Knepley ierr = DMPlexSetCellType(sdm, hybedge, DM_POLYTOPE_POINT_PRISM_TENSOR);CHKERRQ(ierr); 1103cd0c2139SMatthew G Knepley } else if (dep == dim-2) { 11044c367dbcSMatthew G. Knepley const PetscInt hybface = p + pMaxNew[dep+1] + numSplitPoints[dep+1]; 11054c367dbcSMatthew G. Knepley 1106cd0c2139SMatthew G Knepley ierr = DMPlexGetSupport(dm, oldp, &support);CHKERRQ(ierr); 11074c367dbcSMatthew G. Knepley for (e = 0, qn = 0, qp = 0, qf = 0; e < supportSize; ++e) { 1108cd0c2139SMatthew G Knepley PetscInt val; 1109cd0c2139SMatthew G Knepley 1110cd0c2139SMatthew G Knepley ierr = DMLabelGetValue(label, support[e], &val);CHKERRQ(ierr); 11114c367dbcSMatthew G. Knepley if (val == dim-1) ++qf; 11124c367dbcSMatthew G. Knepley if ((val == dim-1) || (val == (shift + dim-1))) ++qn; 11134c367dbcSMatthew G. Knepley if ((val == dim-1) || (val == -(shift + dim-1))) ++qp; 1114cd0c2139SMatthew G Knepley } 11154c367dbcSMatthew G. Knepley /* Split old edge: Faces into original edge and cohesive face (positive side?) */ 11164c367dbcSMatthew G. Knepley ierr = DMPlexSetSupportSize(sdm, newp, qn+1);CHKERRQ(ierr); 11174c367dbcSMatthew G. Knepley /* Split new edge: Faces into split edge and cohesive face (negative side?) */ 11184c367dbcSMatthew G. Knepley ierr = DMPlexSetSupportSize(sdm, splitp, qp+1);CHKERRQ(ierr); 11194c367dbcSMatthew G. Knepley /* Add hybrid face */ 11204c367dbcSMatthew G. Knepley ierr = DMPlexSetConeSize(sdm, hybface, 4);CHKERRQ(ierr); 11214c367dbcSMatthew G. Knepley ierr = DMPlexSetSupportSize(sdm, hybface, qf);CHKERRQ(ierr); 1122412e9a14SMatthew G. Knepley ierr = DMPlexSetCellType(sdm, hybface, DM_POLYTOPE_SEG_PRISM_TENSOR);CHKERRQ(ierr); 1123cd0c2139SMatthew G Knepley } 1124cd0c2139SMatthew G Knepley } 1125cd0c2139SMatthew G Knepley } 112618c5995bSMatthew G. Knepley for (dep = 0; dep <= depth; ++dep) { 112718c5995bSMatthew G. Knepley for (p = 0; p < numUnsplitPoints[dep]; ++p) { 112818c5995bSMatthew G. Knepley const PetscInt oldp = unsplitPoints[dep][p]; 11292582d50cSToby Isaac const PetscInt newp = DMPlexShiftPoint_Internal(oldp, depth, depthShift) /*oldp + depthOffset[dep]*/; 113018c5995bSMatthew G. Knepley const PetscInt *support; 1131da1dd7e4SMatthew G. Knepley PetscInt coneSize, supportSize, qf, e, s; 113218c5995bSMatthew G. Knepley 113318c5995bSMatthew G. Knepley ierr = DMPlexGetConeSize(dm, oldp, &coneSize);CHKERRQ(ierr); 113418c5995bSMatthew G. Knepley ierr = DMPlexGetSupportSize(dm, oldp, &supportSize);CHKERRQ(ierr); 113539254ff6SMatthew G. Knepley ierr = DMPlexGetSupport(dm, oldp, &support);CHKERRQ(ierr); 113618c5995bSMatthew G. Knepley if (dep == 0) { 113718c5995bSMatthew G. Knepley const PetscInt hybedge = p + pMaxNew[dep+1] + numSplitPoints[dep+1] + numSplitPoints[dep]; 113818c5995bSMatthew G. Knepley 113939254ff6SMatthew G. Knepley /* Unsplit vertex: Edges into original vertex, split edges, and new cohesive edge twice */ 114039254ff6SMatthew G. Knepley for (s = 0, qf = 0; s < supportSize; ++s, ++qf) { 114139254ff6SMatthew G. Knepley ierr = PetscFindInt(support[s], numSplitPoints[dep+1], splitPoints[dep+1], &e);CHKERRQ(ierr); 114239254ff6SMatthew G. Knepley if (e >= 0) ++qf; 114339254ff6SMatthew G. Knepley } 114439254ff6SMatthew G. Knepley ierr = DMPlexSetSupportSize(sdm, newp, qf+2);CHKERRQ(ierr); 114518c5995bSMatthew G. Knepley /* Add hybrid edge */ 114618c5995bSMatthew G. Knepley ierr = DMPlexSetConeSize(sdm, hybedge, 2);CHKERRQ(ierr); 1147e1757548SMatthew G. Knepley for (e = 0, qf = 0; e < supportSize; ++e) { 1148e1757548SMatthew G. Knepley PetscInt val; 1149e1757548SMatthew G. Knepley 1150e1757548SMatthew G. Knepley ierr = DMLabelGetValue(label, support[e], &val);CHKERRQ(ierr); 1151e1757548SMatthew G. Knepley /* Split and unsplit edges produce hybrid faces */ 1152da1dd7e4SMatthew G. Knepley if (val == 1) ++qf; 1153da1dd7e4SMatthew G. Knepley if (val == (shift2 + 1)) ++qf; 1154e1757548SMatthew G. Knepley } 1155e1757548SMatthew G. Knepley ierr = DMPlexSetSupportSize(sdm, hybedge, qf);CHKERRQ(ierr); 1156412e9a14SMatthew G. Knepley ierr = DMPlexSetCellType(sdm, hybedge, DM_POLYTOPE_POINT_PRISM_TENSOR);CHKERRQ(ierr); 115718c5995bSMatthew G. Knepley } else if (dep == dim-2) { 115818c5995bSMatthew G. Knepley const PetscInt hybface = p + pMaxNew[dep+1] + numSplitPoints[dep+1] + numSplitPoints[dep]; 1159cd0c2139SMatthew G Knepley PetscInt val; 1160cd0c2139SMatthew G Knepley 1161da1dd7e4SMatthew G. Knepley for (e = 0, qf = 0; e < supportSize; ++e) { 1162cd0c2139SMatthew G Knepley ierr = DMLabelGetValue(label, support[e], &val);CHKERRQ(ierr); 1163da1dd7e4SMatthew G. Knepley if (val == dim-1) qf += 2; 1164da1dd7e4SMatthew G. Knepley else ++qf; 1165cd0c2139SMatthew G Knepley } 116618c5995bSMatthew G. Knepley /* Unsplit edge: Faces into original edge, split face, and cohesive face twice */ 1167da1dd7e4SMatthew G. Knepley ierr = DMPlexSetSupportSize(sdm, newp, qf+2);CHKERRQ(ierr); 116818c5995bSMatthew G. Knepley /* Add hybrid face */ 1169da1dd7e4SMatthew G. Knepley for (e = 0, qf = 0; e < supportSize; ++e) { 1170da1dd7e4SMatthew G. Knepley ierr = DMLabelGetValue(label, support[e], &val);CHKERRQ(ierr); 1171da1dd7e4SMatthew G. Knepley if (val == dim-1) ++qf; 1172da1dd7e4SMatthew G. Knepley } 117318c5995bSMatthew G. Knepley ierr = DMPlexSetConeSize(sdm, hybface, 4);CHKERRQ(ierr); 1174da1dd7e4SMatthew G. Knepley ierr = DMPlexSetSupportSize(sdm, hybface, qf);CHKERRQ(ierr); 1175412e9a14SMatthew G. Knepley ierr = DMPlexSetCellType(sdm, hybface, DM_POLYTOPE_SEG_PRISM_TENSOR);CHKERRQ(ierr); 1176cd0c2139SMatthew G Knepley } 1177cd0c2139SMatthew G Knepley } 1178cd0c2139SMatthew G Knepley } 1179cd0c2139SMatthew G Knepley /* Step 4: Setup split DM */ 1180cd0c2139SMatthew G Knepley ierr = DMSetUp(sdm);CHKERRQ(ierr); 1181cd0c2139SMatthew G Knepley ierr = DMPlexShiftPoints_Internal(dm, depthShift, sdm);CHKERRQ(ierr); 1182dcbb62e8SMatthew G. Knepley ierr = DMPlexGetMaxSizes(sdm, &maxConeSizeNew, &maxSupportSizeNew);CHKERRQ(ierr); 1183dcca6d9dSJed Brown ierr = PetscMalloc3(PetscMax(maxConeSize, maxConeSizeNew)*3,&coneNew,PetscMax(maxConeSize, maxConeSizeNew)*3,&coneONew,PetscMax(maxSupportSize, maxSupportSizeNew),&supportNew);CHKERRQ(ierr); 1184cd0c2139SMatthew G Knepley /* Step 6: Set cones and supports for new points */ 1185cd0c2139SMatthew G Knepley for (dep = 0; dep <= depth; ++dep) { 1186cd0c2139SMatthew G Knepley for (p = 0; p < numSplitPoints[dep]; ++p) { 1187cd0c2139SMatthew G Knepley const PetscInt oldp = splitPoints[dep][p]; 11882582d50cSToby Isaac const PetscInt newp = DMPlexShiftPoint_Internal(oldp, depth, depthShift) /*oldp + depthOffset[dep]*/; 11894c367dbcSMatthew G. Knepley const PetscInt splitp = p + pMaxNew[dep]; 1190cd0c2139SMatthew G Knepley const PetscInt *cone, *support, *ornt; 11914c367dbcSMatthew G. Knepley PetscInt coneSize, supportSize, q, qf, qn, qp, v, e, s; 1192cd0c2139SMatthew G Knepley 1193cd0c2139SMatthew G Knepley ierr = DMPlexGetConeSize(dm, oldp, &coneSize);CHKERRQ(ierr); 1194cd0c2139SMatthew G Knepley ierr = DMPlexGetCone(dm, oldp, &cone);CHKERRQ(ierr); 1195cd0c2139SMatthew G Knepley ierr = DMPlexGetConeOrientation(dm, oldp, &ornt);CHKERRQ(ierr); 1196cd0c2139SMatthew G Knepley ierr = DMPlexGetSupportSize(dm, oldp, &supportSize);CHKERRQ(ierr); 1197cd0c2139SMatthew G Knepley ierr = DMPlexGetSupport(dm, oldp, &support);CHKERRQ(ierr); 1198cd0c2139SMatthew G Knepley if (dep == depth-1) { 119996a07cd0SMatthew G. Knepley PetscBool hasUnsplit = PETSC_FALSE; 12004c367dbcSMatthew G. Knepley const PetscInt hybcell = p + pMaxNew[dep+1] + numSplitPoints[dep+1]; 1201cd0c2139SMatthew G Knepley const PetscInt *supportF; 1202cd0c2139SMatthew G Knepley 1203cd0c2139SMatthew G Knepley /* Split face: copy in old face to new face to start */ 1204cd0c2139SMatthew G Knepley ierr = DMPlexGetSupport(sdm, newp, &supportF);CHKERRQ(ierr); 1205cd0c2139SMatthew G Knepley ierr = DMPlexSetSupport(sdm, splitp, supportF);CHKERRQ(ierr); 1206cd0c2139SMatthew G Knepley /* Split old face: old vertices/edges in cone so no change */ 1207cd0c2139SMatthew G Knepley /* Split new face: new vertices/edges in cone */ 1208cd0c2139SMatthew G Knepley for (q = 0; q < coneSize; ++q) { 12094c367dbcSMatthew G. Knepley ierr = PetscFindInt(cone[q], numSplitPoints[dep-1], splitPoints[dep-1], &v);CHKERRQ(ierr); 121018c5995bSMatthew G. Knepley if (v < 0) { 121118c5995bSMatthew G. Knepley ierr = PetscFindInt(cone[q], numUnsplitPoints[dep-1], unsplitPoints[dep-1], &v);CHKERRQ(ierr); 121218c5995bSMatthew G. Knepley if (v < 0) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Could not locate point %d in split or unsplit points of depth %d", cone[q], dep-1); 12132582d50cSToby Isaac coneNew[2+q] = DMPlexShiftPoint_Internal(cone[q], depth, depthShift) /*cone[q] + depthOffset[dep-1]*/; 121496a07cd0SMatthew G. Knepley hasUnsplit = PETSC_TRUE; 121518c5995bSMatthew G. Knepley } else { 12164c367dbcSMatthew G. Knepley coneNew[2+q] = v + pMaxNew[dep-1]; 1217163235baSMatthew G. Knepley if (dep > 1) { 1218163235baSMatthew G. Knepley const PetscInt *econe; 1219163235baSMatthew G. Knepley PetscInt econeSize, r, vs, vu; 1220163235baSMatthew G. Knepley 1221163235baSMatthew G. Knepley ierr = DMPlexGetConeSize(dm, cone[q], &econeSize);CHKERRQ(ierr); 1222163235baSMatthew G. Knepley ierr = DMPlexGetCone(dm, cone[q], &econe);CHKERRQ(ierr); 1223163235baSMatthew G. Knepley for (r = 0; r < econeSize; ++r) { 1224163235baSMatthew G. Knepley ierr = PetscFindInt(econe[r], numSplitPoints[dep-2], splitPoints[dep-2], &vs);CHKERRQ(ierr); 1225163235baSMatthew G. Knepley ierr = PetscFindInt(econe[r], numUnsplitPoints[dep-2], unsplitPoints[dep-2], &vu);CHKERRQ(ierr); 1226163235baSMatthew G. Knepley if (vs >= 0) continue; 1227163235baSMatthew G. Knepley if (vu < 0) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Could not locate point %d in split or unsplit points of depth %d", econe[r], dep-2); 1228163235baSMatthew G. Knepley hasUnsplit = PETSC_TRUE; 1229163235baSMatthew G. Knepley } 1230163235baSMatthew G. Knepley } 1231cd0c2139SMatthew G Knepley } 1232cd0c2139SMatthew G Knepley } 1233cd0c2139SMatthew G Knepley ierr = DMPlexSetCone(sdm, splitp, &coneNew[2]);CHKERRQ(ierr); 1234cd0c2139SMatthew G Knepley ierr = DMPlexSetConeOrientation(sdm, splitp, ornt);CHKERRQ(ierr); 1235e537020bSMatthew G. Knepley /* Face support */ 1236cd0c2139SMatthew G Knepley for (s = 0; s < supportSize; ++s) { 1237cd0c2139SMatthew G Knepley PetscInt val; 1238cd0c2139SMatthew G Knepley 1239cd0c2139SMatthew G Knepley ierr = DMLabelGetValue(label, support[s], &val);CHKERRQ(ierr); 1240cd0c2139SMatthew G Knepley if (val < 0) { 1241cd0c2139SMatthew G Knepley /* Split old face: Replace negative side cell with cohesive cell */ 12424c367dbcSMatthew G. Knepley ierr = DMPlexInsertSupport(sdm, newp, s, hybcell);CHKERRQ(ierr); 1243cd0c2139SMatthew G Knepley } else { 1244cd0c2139SMatthew G Knepley /* Split new face: Replace positive side cell with cohesive cell */ 12454c367dbcSMatthew G. Knepley ierr = DMPlexInsertSupport(sdm, splitp, s, hybcell);CHKERRQ(ierr); 1246e537020bSMatthew G. Knepley /* Get orientation for cohesive face */ 1247e537020bSMatthew G. Knepley { 1248e537020bSMatthew G. Knepley const PetscInt *ncone, *nconeO; 1249e537020bSMatthew G. Knepley PetscInt nconeSize, nc; 1250e537020bSMatthew G. Knepley 1251e537020bSMatthew G. Knepley ierr = DMPlexGetConeSize(dm, support[s], &nconeSize);CHKERRQ(ierr); 1252e537020bSMatthew G. Knepley ierr = DMPlexGetCone(dm, support[s], &ncone);CHKERRQ(ierr); 1253e537020bSMatthew G. Knepley ierr = DMPlexGetConeOrientation(dm, support[s], &nconeO);CHKERRQ(ierr); 1254e537020bSMatthew G. Knepley for (nc = 0; nc < nconeSize; ++nc) { 1255e537020bSMatthew G. Knepley if (ncone[nc] == oldp) { 1256e537020bSMatthew G. Knepley coneONew[0] = nconeO[nc]; 1257e537020bSMatthew G. Knepley break; 1258cd0c2139SMatthew G Knepley } 1259cd0c2139SMatthew G Knepley } 1260e537020bSMatthew G. Knepley if (nc >= nconeSize) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Could not locate face %d in neighboring cell %d", oldp, support[s]); 1261e537020bSMatthew G. Knepley } 1262e537020bSMatthew G. Knepley } 1263e537020bSMatthew G. Knepley } 12644c367dbcSMatthew G. Knepley /* Cohesive cell: Old and new split face, then new cohesive faces */ 1265fd4b9f15SMatthew G. Knepley coneNew[0] = newp; /* Extracted negative side orientation above */ 12664c367dbcSMatthew G. Knepley coneNew[1] = splitp; 12674c367dbcSMatthew G. Knepley coneONew[1] = coneONew[0]; 1268e537020bSMatthew G. Knepley for (q = 0; q < coneSize; ++q) { 1269412e9a14SMatthew G. Knepley /* Hybrid faces must follow order from oriented end face */ 1270412e9a14SMatthew G. Knepley const PetscInt o = coneONew[0]; 1271412e9a14SMatthew G. Knepley const PetscInt qo = o < 0 ? (-(o+1)+coneSize-q)%coneSize : (q+o)%coneSize; 1272412e9a14SMatthew G. Knepley 1273412e9a14SMatthew G. Knepley ierr = PetscFindInt(cone[qo], numSplitPoints[dep-1], splitPoints[dep-1], &v);CHKERRQ(ierr); 127418c5995bSMatthew G. Knepley if (v < 0) { 1275412e9a14SMatthew G. Knepley ierr = PetscFindInt(cone[qo], numUnsplitPoints[dep-1], unsplitPoints[dep-1], &v);CHKERRQ(ierr); 127618c5995bSMatthew G. Knepley coneNew[2+q] = v + pMaxNew[dep] + numSplitPoints[dep] + numSplitPoints[dep-1]; 127718c5995bSMatthew G. Knepley } else { 127818c5995bSMatthew G. Knepley coneNew[2+q] = v + pMaxNew[dep] + numSplitPoints[dep]; 127918c5995bSMatthew G. Knepley } 1280412e9a14SMatthew G. Knepley coneONew[2+q] = ((o < 0) + (ornt[qo] < 0))%2 ? -1 : 0; 1281e537020bSMatthew G. Knepley } 12824c367dbcSMatthew G. Knepley ierr = DMPlexSetCone(sdm, hybcell, coneNew);CHKERRQ(ierr); 12834c367dbcSMatthew G. Knepley ierr = DMPlexSetConeOrientation(sdm, hybcell, coneONew);CHKERRQ(ierr); 128496a07cd0SMatthew G. Knepley /* Label the hybrid cells on the boundary of the split */ 128596a07cd0SMatthew G. Knepley if (hasUnsplit) {ierr = DMLabelSetValue(label, -hybcell, dim);CHKERRQ(ierr);} 1286cd0c2139SMatthew G Knepley } else if (dep == 0) { 12874c367dbcSMatthew G. Knepley const PetscInt hybedge = p + pMaxNew[dep+1] + numSplitPoints[dep+1]; 1288cd0c2139SMatthew G Knepley 1289cd0c2139SMatthew G Knepley /* Split old vertex: Edges in old split faces and new cohesive edge */ 12904c367dbcSMatthew G. Knepley for (e = 0, qn = 0; e < supportSize; ++e) { 1291cd0c2139SMatthew G Knepley PetscInt val; 1292cd0c2139SMatthew G Knepley 1293cd0c2139SMatthew G Knepley ierr = DMLabelGetValue(label, support[e], &val);CHKERRQ(ierr); 1294cd0c2139SMatthew G Knepley if ((val == 1) || (val == (shift + 1))) { 12952582d50cSToby Isaac supportNew[qn++] = DMPlexShiftPoint_Internal(support[e], depth, depthShift) /*support[e] + depthOffset[dep+1]*/; 1296cd0c2139SMatthew G Knepley } 1297cd0c2139SMatthew G Knepley } 12984c367dbcSMatthew G. Knepley supportNew[qn] = hybedge; 1299cd0c2139SMatthew G Knepley ierr = DMPlexSetSupport(sdm, newp, supportNew);CHKERRQ(ierr); 1300cd0c2139SMatthew G Knepley /* Split new vertex: Edges in new split faces and new cohesive edge */ 13014c367dbcSMatthew G. Knepley for (e = 0, qp = 0; e < supportSize; ++e) { 1302cd0c2139SMatthew G Knepley PetscInt val, edge; 1303cd0c2139SMatthew G Knepley 1304cd0c2139SMatthew G Knepley ierr = DMLabelGetValue(label, support[e], &val);CHKERRQ(ierr); 1305cd0c2139SMatthew G Knepley if (val == 1) { 13064c367dbcSMatthew G. Knepley ierr = PetscFindInt(support[e], numSplitPoints[dep+1], splitPoints[dep+1], &edge);CHKERRQ(ierr); 1307cd0c2139SMatthew G Knepley if (edge < 0) SETERRQ1(comm, PETSC_ERR_ARG_WRONG, "Edge %d is not a split edge", support[e]); 13084c367dbcSMatthew G. Knepley supportNew[qp++] = edge + pMaxNew[dep+1]; 1309cd0c2139SMatthew G Knepley } else if (val == -(shift + 1)) { 13102582d50cSToby Isaac supportNew[qp++] = DMPlexShiftPoint_Internal(support[e], depth, depthShift) /*support[e] + depthOffset[dep+1]*/; 1311cd0c2139SMatthew G Knepley } 1312cd0c2139SMatthew G Knepley } 13134c367dbcSMatthew G. Knepley supportNew[qp] = hybedge; 1314cd0c2139SMatthew G Knepley ierr = DMPlexSetSupport(sdm, splitp, supportNew);CHKERRQ(ierr); 13154c367dbcSMatthew G. Knepley /* Hybrid edge: Old and new split vertex */ 1316cd0c2139SMatthew G Knepley coneNew[0] = newp; 1317cd0c2139SMatthew G Knepley coneNew[1] = splitp; 13184c367dbcSMatthew G. Knepley ierr = DMPlexSetCone(sdm, hybedge, coneNew);CHKERRQ(ierr); 13194c367dbcSMatthew G. Knepley for (e = 0, qf = 0; e < supportSize; ++e) { 13204c367dbcSMatthew G. Knepley PetscInt val, edge; 13214c367dbcSMatthew G. Knepley 13224c367dbcSMatthew G. Knepley ierr = DMLabelGetValue(label, support[e], &val);CHKERRQ(ierr); 13234c367dbcSMatthew G. Knepley if (val == 1) { 13244c367dbcSMatthew G. Knepley ierr = PetscFindInt(support[e], numSplitPoints[dep+1], splitPoints[dep+1], &edge);CHKERRQ(ierr); 13254c367dbcSMatthew G. Knepley if (edge < 0) SETERRQ1(comm, PETSC_ERR_ARG_WRONG, "Edge %d is not a split edge", support[e]); 13264c367dbcSMatthew G. Knepley supportNew[qf++] = edge + pMaxNew[dep+2] + numSplitPoints[dep+2]; 13274c367dbcSMatthew G. Knepley } 13284c367dbcSMatthew G. Knepley } 13294c367dbcSMatthew G. Knepley ierr = DMPlexSetSupport(sdm, hybedge, supportNew);CHKERRQ(ierr); 1330cd0c2139SMatthew G Knepley } else if (dep == dim-2) { 13314c367dbcSMatthew G. Knepley const PetscInt hybface = p + pMaxNew[dep+1] + numSplitPoints[dep+1]; 13324c367dbcSMatthew G. Knepley 1333cd0c2139SMatthew G Knepley /* Split old edge: old vertices in cone so no change */ 1334cd0c2139SMatthew G Knepley /* Split new edge: new vertices in cone */ 1335cd0c2139SMatthew G Knepley for (q = 0; q < coneSize; ++q) { 13364c367dbcSMatthew G. Knepley ierr = PetscFindInt(cone[q], numSplitPoints[dep-1], splitPoints[dep-1], &v);CHKERRQ(ierr); 1337e1757548SMatthew G. Knepley if (v < 0) { 1338e1757548SMatthew G. Knepley ierr = PetscFindInt(cone[q], numUnsplitPoints[dep-1], unsplitPoints[dep-1], &v);CHKERRQ(ierr); 1339e1757548SMatthew G. Knepley if (v < 0) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Could not locate point %d in split or unsplit points of depth %d", cone[q], dep-1); 13402582d50cSToby Isaac coneNew[q] = DMPlexShiftPoint_Internal(cone[q], depth, depthShift) /*cone[q] + depthOffset[dep-1]*/; 1341e1757548SMatthew G. Knepley } else { 13424c367dbcSMatthew G. Knepley coneNew[q] = v + pMaxNew[dep-1]; 1343cd0c2139SMatthew G Knepley } 1344e1757548SMatthew G. Knepley } 1345cd0c2139SMatthew G Knepley ierr = DMPlexSetCone(sdm, splitp, coneNew);CHKERRQ(ierr); 1346cd0c2139SMatthew G Knepley /* Split old edge: Faces in positive side cells and old split faces */ 1347cd0c2139SMatthew G Knepley for (e = 0, q = 0; e < supportSize; ++e) { 1348cd0c2139SMatthew G Knepley PetscInt val; 1349cd0c2139SMatthew G Knepley 1350cd0c2139SMatthew G Knepley ierr = DMLabelGetValue(label, support[e], &val);CHKERRQ(ierr); 13514c367dbcSMatthew G. Knepley if (val == dim-1) { 13522582d50cSToby Isaac supportNew[q++] = DMPlexShiftPoint_Internal(support[e], depth, depthShift) /*support[e] + depthOffset[dep+1]*/; 13534c367dbcSMatthew G. Knepley } else if (val == (shift + dim-1)) { 13542582d50cSToby Isaac supportNew[q++] = DMPlexShiftPoint_Internal(support[e], depth, depthShift) /*support[e] + depthOffset[dep+1]*/; 1355cd0c2139SMatthew G Knepley } 1356cd0c2139SMatthew G Knepley } 1357b279cd2aSMatthew G. Knepley supportNew[q++] = p + pMaxNew[dep+1] + numSplitPoints[dep+1]; 1358cd0c2139SMatthew G Knepley ierr = DMPlexSetSupport(sdm, newp, supportNew);CHKERRQ(ierr); 1359cd0c2139SMatthew G Knepley /* Split new edge: Faces in negative side cells and new split faces */ 1360cd0c2139SMatthew G Knepley for (e = 0, q = 0; e < supportSize; ++e) { 1361cd0c2139SMatthew G Knepley PetscInt val, face; 1362cd0c2139SMatthew G Knepley 1363cd0c2139SMatthew G Knepley ierr = DMLabelGetValue(label, support[e], &val);CHKERRQ(ierr); 1364cd0c2139SMatthew G Knepley if (val == dim-1) { 13654c367dbcSMatthew G. Knepley ierr = PetscFindInt(support[e], numSplitPoints[dep+1], splitPoints[dep+1], &face);CHKERRQ(ierr); 1366cd0c2139SMatthew G Knepley if (face < 0) SETERRQ1(comm, PETSC_ERR_ARG_WRONG, "Face %d is not a split face", support[e]); 13674c367dbcSMatthew G. Knepley supportNew[q++] = face + pMaxNew[dep+1]; 1368cd0c2139SMatthew G Knepley } else if (val == -(shift + dim-1)) { 13692582d50cSToby Isaac supportNew[q++] = DMPlexShiftPoint_Internal(support[e], depth, depthShift) /*support[e] + depthOffset[dep+1]*/; 1370cd0c2139SMatthew G Knepley } 1371cd0c2139SMatthew G Knepley } 1372b279cd2aSMatthew G. Knepley supportNew[q++] = p + pMaxNew[dep+1] + numSplitPoints[dep+1]; 1373cd0c2139SMatthew G Knepley ierr = DMPlexSetSupport(sdm, splitp, supportNew);CHKERRQ(ierr); 13744c367dbcSMatthew G. Knepley /* Hybrid face */ 13754c367dbcSMatthew G. Knepley coneNew[0] = newp; 13764c367dbcSMatthew G. Knepley coneNew[1] = splitp; 13774c367dbcSMatthew G. Knepley for (v = 0; v < coneSize; ++v) { 13784c367dbcSMatthew G. Knepley PetscInt vertex; 13794c367dbcSMatthew G. Knepley ierr = PetscFindInt(cone[v], numSplitPoints[dep-1], splitPoints[dep-1], &vertex);CHKERRQ(ierr); 1380e1757548SMatthew G. Knepley if (vertex < 0) { 1381e1757548SMatthew G. Knepley ierr = PetscFindInt(cone[v], numUnsplitPoints[dep-1], unsplitPoints[dep-1], &vertex);CHKERRQ(ierr); 1382e1757548SMatthew G. Knepley if (vertex < 0) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Could not locate point %d in split or unsplit points of depth %d", cone[v], dep-1); 1383e1757548SMatthew G. Knepley coneNew[2+v] = vertex + pMaxNew[dep] + numSplitPoints[dep] + numSplitPoints[dep-1]; 1384e1757548SMatthew G. Knepley } else { 13854c367dbcSMatthew G. Knepley coneNew[2+v] = vertex + pMaxNew[dep] + numSplitPoints[dep]; 13864c367dbcSMatthew G. Knepley } 1387e1757548SMatthew G. Knepley } 13884c367dbcSMatthew G. Knepley ierr = DMPlexSetCone(sdm, hybface, coneNew);CHKERRQ(ierr); 13894c367dbcSMatthew G. Knepley for (e = 0, qf = 0; e < supportSize; ++e) { 13904c367dbcSMatthew G. Knepley PetscInt val, face; 13914c367dbcSMatthew G. Knepley 13924c367dbcSMatthew G. Knepley ierr = DMLabelGetValue(label, support[e], &val);CHKERRQ(ierr); 13934c367dbcSMatthew G. Knepley if (val == dim-1) { 13944c367dbcSMatthew G. Knepley ierr = PetscFindInt(support[e], numSplitPoints[dep+1], splitPoints[dep+1], &face);CHKERRQ(ierr); 13954c367dbcSMatthew G. Knepley if (face < 0) SETERRQ1(comm, PETSC_ERR_ARG_WRONG, "Face %d is not a split face", support[e]); 13964c367dbcSMatthew G. Knepley supportNew[qf++] = face + pMaxNew[dep+2] + numSplitPoints[dep+2]; 13974c367dbcSMatthew G. Knepley } 13984c367dbcSMatthew G. Knepley } 13994c367dbcSMatthew G. Knepley ierr = DMPlexSetSupport(sdm, hybface, supportNew);CHKERRQ(ierr); 1400cd0c2139SMatthew G Knepley } 1401cd0c2139SMatthew G Knepley } 1402cd0c2139SMatthew G Knepley } 140318c5995bSMatthew G. Knepley for (dep = 0; dep <= depth; ++dep) { 140418c5995bSMatthew G. Knepley for (p = 0; p < numUnsplitPoints[dep]; ++p) { 140518c5995bSMatthew G. Knepley const PetscInt oldp = unsplitPoints[dep][p]; 14062582d50cSToby Isaac const PetscInt newp = DMPlexShiftPoint_Internal(oldp, depth, depthShift) /*oldp + depthOffset[dep]*/; 140718c5995bSMatthew G. Knepley const PetscInt *cone, *support, *ornt; 1408e1757548SMatthew G. Knepley PetscInt coneSize, supportSize, supportSizeNew, q, qf, e, f, s; 140918c5995bSMatthew G. Knepley 141018c5995bSMatthew G. Knepley ierr = DMPlexGetConeSize(dm, oldp, &coneSize);CHKERRQ(ierr); 141118c5995bSMatthew G. Knepley ierr = DMPlexGetCone(dm, oldp, &cone);CHKERRQ(ierr); 141218c5995bSMatthew G. Knepley ierr = DMPlexGetConeOrientation(dm, oldp, &ornt);CHKERRQ(ierr); 141318c5995bSMatthew G. Knepley ierr = DMPlexGetSupportSize(dm, oldp, &supportSize);CHKERRQ(ierr); 141418c5995bSMatthew G. Knepley ierr = DMPlexGetSupport(dm, oldp, &support);CHKERRQ(ierr); 141518c5995bSMatthew G. Knepley if (dep == 0) { 141618c5995bSMatthew G. Knepley const PetscInt hybedge = p + pMaxNew[dep+1] + numSplitPoints[dep+1] + numSplitPoints[dep]; 141718c5995bSMatthew G. Knepley 141818c5995bSMatthew G. Knepley /* Unsplit vertex */ 141918c5995bSMatthew G. Knepley ierr = DMPlexGetSupportSize(sdm, newp, &supportSizeNew);CHKERRQ(ierr); 142018c5995bSMatthew G. Knepley for (s = 0, q = 0; s < supportSize; ++s) { 14212582d50cSToby Isaac supportNew[q++] = DMPlexShiftPoint_Internal(support[s], depth, depthShift) /*support[s] + depthOffset[dep+1]*/; 142218c5995bSMatthew G. Knepley ierr = PetscFindInt(support[s], numSplitPoints[dep+1], splitPoints[dep+1], &e);CHKERRQ(ierr); 142318c5995bSMatthew G. Knepley if (e >= 0) { 142418c5995bSMatthew G. Knepley supportNew[q++] = e + pMaxNew[dep+1]; 142518c5995bSMatthew G. Knepley } 142618c5995bSMatthew G. Knepley } 142718c5995bSMatthew G. Knepley supportNew[q++] = hybedge; 142818c5995bSMatthew G. Knepley supportNew[q++] = hybedge; 142918c5995bSMatthew G. Knepley if (q != supportSizeNew) SETERRQ3(comm, PETSC_ERR_ARG_WRONG, "Support size %d != %d for vertex %d", q, supportSizeNew, newp); 143018c5995bSMatthew G. Knepley ierr = DMPlexSetSupport(sdm, newp, supportNew);CHKERRQ(ierr); 143118c5995bSMatthew G. Knepley /* Hybrid edge */ 143218c5995bSMatthew G. Knepley coneNew[0] = newp; 143318c5995bSMatthew G. Knepley coneNew[1] = newp; 143418c5995bSMatthew G. Knepley ierr = DMPlexSetCone(sdm, hybedge, coneNew);CHKERRQ(ierr); 143518c5995bSMatthew G. Knepley for (e = 0, qf = 0; e < supportSize; ++e) { 143618c5995bSMatthew G. Knepley PetscInt val, edge; 143718c5995bSMatthew G. Knepley 143818c5995bSMatthew G. Knepley ierr = DMLabelGetValue(label, support[e], &val);CHKERRQ(ierr); 143918c5995bSMatthew G. Knepley if (val == 1) { 144018c5995bSMatthew G. Knepley ierr = PetscFindInt(support[e], numSplitPoints[dep+1], splitPoints[dep+1], &edge);CHKERRQ(ierr); 144118c5995bSMatthew G. Knepley if (edge < 0) SETERRQ1(comm, PETSC_ERR_ARG_WRONG, "Edge %d is not a split edge", support[e]); 144218c5995bSMatthew G. Knepley supportNew[qf++] = edge + pMaxNew[dep+2] + numSplitPoints[dep+2]; 1443e1757548SMatthew G. Knepley } else if (val == (shift2 + 1)) { 1444e1757548SMatthew G. Knepley ierr = PetscFindInt(support[e], numUnsplitPoints[dep+1], unsplitPoints[dep+1], &edge);CHKERRQ(ierr); 1445e1757548SMatthew G. Knepley if (edge < 0) SETERRQ1(comm, PETSC_ERR_ARG_WRONG, "Edge %d is not a unsplit edge", support[e]); 1446e1757548SMatthew G. Knepley supportNew[qf++] = edge + pMaxNew[dep+2] + numSplitPoints[dep+2] + numSplitPoints[dep+1]; 144718c5995bSMatthew G. Knepley } 144818c5995bSMatthew G. Knepley } 144918c5995bSMatthew G. Knepley ierr = DMPlexSetSupport(sdm, hybedge, supportNew);CHKERRQ(ierr); 1450e1757548SMatthew G. Knepley } else if (dep == dim-2) { 1451e1757548SMatthew G. Knepley const PetscInt hybface = p + pMaxNew[dep+1] + numSplitPoints[dep+1] + numSplitPoints[dep]; 1452e1757548SMatthew G. Knepley 1453da1dd7e4SMatthew G. Knepley /* Unsplit edge: Faces into original edge, split face, and hybrid face twice */ 1454e1757548SMatthew G. Knepley for (f = 0, qf = 0; f < supportSize; ++f) { 1455e1757548SMatthew G. Knepley PetscInt val, face; 1456e1757548SMatthew G. Knepley 1457e1757548SMatthew G. Knepley ierr = DMLabelGetValue(label, support[f], &val);CHKERRQ(ierr); 1458e1757548SMatthew G. Knepley if (val == dim-1) { 1459e1757548SMatthew G. Knepley ierr = PetscFindInt(support[f], numSplitPoints[dep+1], splitPoints[dep+1], &face);CHKERRQ(ierr); 1460e1757548SMatthew G. Knepley if (face < 0) SETERRQ1(comm, PETSC_ERR_ARG_WRONG, "Face %d is not a split face", support[f]); 14612582d50cSToby Isaac supportNew[qf++] = DMPlexShiftPoint_Internal(support[f], depth, depthShift) /*support[f] + depthOffset[dep+1]*/; 1462e1757548SMatthew G. Knepley supportNew[qf++] = face + pMaxNew[dep+1]; 1463e1757548SMatthew G. Knepley } else { 14642582d50cSToby Isaac supportNew[qf++] = DMPlexShiftPoint_Internal(support[f], depth, depthShift) /*support[f] + depthOffset[dep+1]*/; 1465e1757548SMatthew G. Knepley } 1466e1757548SMatthew G. Knepley } 1467e1757548SMatthew G. Knepley supportNew[qf++] = hybface; 1468e1757548SMatthew G. Knepley supportNew[qf++] = hybface; 1469da1dd7e4SMatthew G. Knepley ierr = DMPlexGetSupportSize(sdm, newp, &supportSizeNew);CHKERRQ(ierr); 1470da1dd7e4SMatthew G. Knepley if (qf != supportSizeNew) SETERRQ3(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Support size for unsplit edge %d is %d != %d\n", newp, qf, supportSizeNew); 1471e1757548SMatthew G. Knepley ierr = DMPlexSetSupport(sdm, newp, supportNew);CHKERRQ(ierr); 1472e1757548SMatthew G. Knepley /* Add hybrid face */ 1473e1757548SMatthew G. Knepley coneNew[0] = newp; 1474212cc919SMatthew G. Knepley coneNew[1] = newp; 1475e1757548SMatthew G. Knepley ierr = PetscFindInt(cone[0], numUnsplitPoints[dep-1], unsplitPoints[dep-1], &v);CHKERRQ(ierr); 1476e1757548SMatthew G. Knepley if (v < 0) SETERRQ1(comm, PETSC_ERR_ARG_WRONG, "Vertex %d is not an unsplit vertex", cone[0]); 1477212cc919SMatthew G. Knepley coneNew[2] = v + pMaxNew[dep] + numSplitPoints[dep] + numSplitPoints[dep-1]; 1478e1757548SMatthew G. Knepley ierr = PetscFindInt(cone[1], numUnsplitPoints[dep-1], unsplitPoints[dep-1], &v);CHKERRQ(ierr); 1479e1757548SMatthew G. Knepley if (v < 0) SETERRQ1(comm, PETSC_ERR_ARG_WRONG, "Vertex %d is not an unsplit vertex", cone[1]); 1480e1757548SMatthew G. Knepley coneNew[3] = v + pMaxNew[dep] + numSplitPoints[dep] + numSplitPoints[dep-1]; 1481e1757548SMatthew G. Knepley ierr = DMPlexSetCone(sdm, hybface, coneNew);CHKERRQ(ierr); 1482da1dd7e4SMatthew G. Knepley for (f = 0, qf = 0; f < supportSize; ++f) { 1483da1dd7e4SMatthew G. Knepley PetscInt val, face; 1484da1dd7e4SMatthew G. Knepley 1485da1dd7e4SMatthew G. Knepley ierr = DMLabelGetValue(label, support[f], &val);CHKERRQ(ierr); 1486da1dd7e4SMatthew G. Knepley if (val == dim-1) { 1487da1dd7e4SMatthew G. Knepley ierr = PetscFindInt(support[f], numSplitPoints[dep+1], splitPoints[dep+1], &face);CHKERRQ(ierr); 1488da1dd7e4SMatthew G. Knepley supportNew[qf++] = face + pMaxNew[dep+2] + numSplitPoints[dep+2]; 1489da1dd7e4SMatthew G. Knepley } 1490da1dd7e4SMatthew G. Knepley } 1491da1dd7e4SMatthew G. Knepley ierr = DMPlexGetSupportSize(sdm, hybface, &supportSizeNew);CHKERRQ(ierr); 1492da1dd7e4SMatthew G. Knepley if (qf != supportSizeNew) SETERRQ3(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Support size for hybrid face %d is %d != %d\n", hybface, qf, supportSizeNew); 1493e1757548SMatthew G. Knepley ierr = DMPlexSetSupport(sdm, hybface, supportNew);CHKERRQ(ierr); 1494cd0c2139SMatthew G Knepley } 1495cd0c2139SMatthew G Knepley } 1496cd0c2139SMatthew G Knepley } 1497cd0c2139SMatthew G Knepley /* Step 6b: Replace split points in negative side cones */ 1498cd0c2139SMatthew G Knepley for (sp = 0; sp < numSP; ++sp) { 1499cd0c2139SMatthew G Knepley PetscInt dep = values[sp]; 1500cd0c2139SMatthew G Knepley IS pIS; 1501cd0c2139SMatthew G Knepley PetscInt numPoints; 1502cd0c2139SMatthew G Knepley const PetscInt *points; 1503cd0c2139SMatthew G Knepley 1504cd0c2139SMatthew G Knepley if (dep >= 0) continue; 1505cd0c2139SMatthew G Knepley ierr = DMLabelGetStratumIS(label, dep, &pIS);CHKERRQ(ierr); 1506cd0c2139SMatthew G Knepley if (!pIS) continue; 1507cd0c2139SMatthew G Knepley dep = -dep - shift; 1508cd0c2139SMatthew G Knepley ierr = ISGetLocalSize(pIS, &numPoints);CHKERRQ(ierr); 1509cd0c2139SMatthew G Knepley ierr = ISGetIndices(pIS, &points);CHKERRQ(ierr); 1510cd0c2139SMatthew G Knepley for (p = 0; p < numPoints; ++p) { 1511cd0c2139SMatthew G Knepley const PetscInt oldp = points[p]; 15122582d50cSToby Isaac const PetscInt newp = DMPlexShiftPoint_Internal(oldp, depth, depthShift) /*depthOffset[dep] + oldp*/; 1513cd0c2139SMatthew G Knepley const PetscInt *cone; 1514cd0c2139SMatthew G Knepley PetscInt coneSize, c; 151550cf782dSMatthew G. Knepley /* PetscBool replaced = PETSC_FALSE; */ 1516cd0c2139SMatthew G Knepley 1517cd0c2139SMatthew G Knepley /* Negative edge: replace split vertex */ 1518cd0c2139SMatthew G Knepley /* Negative cell: replace split face */ 1519cd0c2139SMatthew G Knepley ierr = DMPlexGetConeSize(sdm, newp, &coneSize);CHKERRQ(ierr); 1520cd0c2139SMatthew G Knepley ierr = DMPlexGetCone(sdm, newp, &cone);CHKERRQ(ierr); 1521cd0c2139SMatthew G Knepley for (c = 0; c < coneSize; ++c) { 1522e38fbfedSToby Isaac const PetscInt coldp = DMPlexShiftPointInverse_Internal(cone[c],depth,depthShift); 1523cd0c2139SMatthew G Knepley PetscInt csplitp, cp, val; 1524cd0c2139SMatthew G Knepley 1525cd0c2139SMatthew G Knepley ierr = DMLabelGetValue(label, coldp, &val);CHKERRQ(ierr); 1526cd0c2139SMatthew G Knepley if (val == dep-1) { 1527cd0c2139SMatthew G Knepley ierr = PetscFindInt(coldp, numSplitPoints[dep-1], splitPoints[dep-1], &cp);CHKERRQ(ierr); 1528cd0c2139SMatthew G Knepley if (cp < 0) SETERRQ2(comm, PETSC_ERR_ARG_WRONG, "Point %d is not a split point of dimension %d", oldp, dep-1); 1529cd0c2139SMatthew G Knepley csplitp = pMaxNew[dep-1] + cp; 1530cd0c2139SMatthew G Knepley ierr = DMPlexInsertCone(sdm, newp, c, csplitp);CHKERRQ(ierr); 153150cf782dSMatthew G. Knepley /* replaced = PETSC_TRUE; */ 1532cd0c2139SMatthew G Knepley } 1533cd0c2139SMatthew G Knepley } 15344a189a86SMatthew G. Knepley /* Cells with only a vertex or edge on the submesh have no replacement */ 15354a189a86SMatthew G. Knepley /* if (!replaced) SETERRQ1(comm, PETSC_ERR_ARG_WRONG, "The cone of point %d does not contain split points", oldp); */ 1536cd0c2139SMatthew G Knepley } 1537cd0c2139SMatthew G Knepley ierr = ISRestoreIndices(pIS, &points);CHKERRQ(ierr); 1538cd0c2139SMatthew G Knepley ierr = ISDestroy(&pIS);CHKERRQ(ierr); 1539cd0c2139SMatthew G Knepley } 1540fa8e8ae5SToby Isaac /* Step 7: Coordinates */ 1541cd0c2139SMatthew G Knepley ierr = DMPlexShiftCoordinates_Internal(dm, depthShift, sdm);CHKERRQ(ierr); 154269d8a9ceSMatthew G. Knepley ierr = DMGetCoordinateSection(sdm, &coordSection);CHKERRQ(ierr); 1543cd0c2139SMatthew G Knepley ierr = DMGetCoordinatesLocal(sdm, &coordinates);CHKERRQ(ierr); 1544cd0c2139SMatthew G Knepley ierr = VecGetArray(coordinates, &coords);CHKERRQ(ierr); 1545cd0c2139SMatthew G Knepley for (v = 0; v < (numSplitPoints ? numSplitPoints[0] : 0); ++v) { 15462582d50cSToby Isaac const PetscInt newp = DMPlexShiftPoint_Internal(splitPoints[0][v], depth, depthShift) /*depthOffset[0] + splitPoints[0][v]*/; 1547cd0c2139SMatthew G Knepley const PetscInt splitp = pMaxNew[0] + v; 1548cd0c2139SMatthew G Knepley PetscInt dof, off, soff, d; 1549cd0c2139SMatthew G Knepley 1550cd0c2139SMatthew G Knepley ierr = PetscSectionGetDof(coordSection, newp, &dof);CHKERRQ(ierr); 1551cd0c2139SMatthew G Knepley ierr = PetscSectionGetOffset(coordSection, newp, &off);CHKERRQ(ierr); 1552cd0c2139SMatthew G Knepley ierr = PetscSectionGetOffset(coordSection, splitp, &soff);CHKERRQ(ierr); 1553cd0c2139SMatthew G Knepley for (d = 0; d < dof; ++d) coords[soff+d] = coords[off+d]; 1554cd0c2139SMatthew G Knepley } 1555cd0c2139SMatthew G Knepley ierr = VecRestoreArray(coordinates, &coords);CHKERRQ(ierr); 1556fa8e8ae5SToby Isaac /* Step 8: SF, if I can figure this out we can split the mesh in parallel */ 1557cd0c2139SMatthew G Knepley ierr = DMPlexShiftSF_Internal(dm, depthShift, sdm);CHKERRQ(ierr); 1558fa8e8ae5SToby Isaac /* Step 9: Labels */ 1559cd0c2139SMatthew G Knepley ierr = DMPlexShiftLabels_Internal(dm, depthShift, sdm);CHKERRQ(ierr); 1560c58f1c22SToby Isaac ierr = DMGetNumLabels(sdm, &numLabels);CHKERRQ(ierr); 1561cd0c2139SMatthew G Knepley for (dep = 0; dep <= depth; ++dep) { 1562cd0c2139SMatthew G Knepley for (p = 0; p < numSplitPoints[dep]; ++p) { 15632582d50cSToby Isaac const PetscInt newp = DMPlexShiftPoint_Internal(splitPoints[dep][p], depth, depthShift) /*depthOffset[dep] + splitPoints[dep][p]*/; 1564cd0c2139SMatthew G Knepley const PetscInt splitp = pMaxNew[dep] + p; 1565cd0c2139SMatthew G Knepley PetscInt l; 1566cd0c2139SMatthew G Knepley 15677db7e0a7SMatthew G. Knepley if (splitLabel) { 15687db7e0a7SMatthew G. Knepley const PetscInt val = 100 + dep; 15697db7e0a7SMatthew G. Knepley 15707db7e0a7SMatthew G. Knepley ierr = DMLabelSetValue(splitLabel, newp, val);CHKERRQ(ierr); 15717db7e0a7SMatthew G. Knepley ierr = DMLabelSetValue(splitLabel, splitp, -val);CHKERRQ(ierr); 15727db7e0a7SMatthew G. Knepley } 1573cd0c2139SMatthew G Knepley for (l = 0; l < numLabels; ++l) { 1574cd0c2139SMatthew G Knepley DMLabel mlabel; 1575cd0c2139SMatthew G Knepley const char *lname; 1576cd0c2139SMatthew G Knepley PetscInt val; 15779a356370SMatthew G. Knepley PetscBool isDepth; 1578cd0c2139SMatthew G Knepley 1579c58f1c22SToby Isaac ierr = DMGetLabelName(sdm, l, &lname);CHKERRQ(ierr); 15809a356370SMatthew G. Knepley ierr = PetscStrcmp(lname, "depth", &isDepth);CHKERRQ(ierr); 15819a356370SMatthew G. Knepley if (isDepth) continue; 1582c58f1c22SToby Isaac ierr = DMGetLabel(sdm, lname, &mlabel);CHKERRQ(ierr); 1583cd0c2139SMatthew G Knepley ierr = DMLabelGetValue(mlabel, newp, &val);CHKERRQ(ierr); 1584cd0c2139SMatthew G Knepley if (val >= 0) { 1585cd0c2139SMatthew G Knepley ierr = DMLabelSetValue(mlabel, splitp, val);CHKERRQ(ierr); 1586cd0c2139SMatthew G Knepley } 1587cd0c2139SMatthew G Knepley } 1588cd0c2139SMatthew G Knepley } 1589cd0c2139SMatthew G Knepley } 1590cd0c2139SMatthew G Knepley for (sp = 0; sp < numSP; ++sp) { 1591cd0c2139SMatthew G Knepley const PetscInt dep = values[sp]; 1592cd0c2139SMatthew G Knepley 1593cd0c2139SMatthew G Knepley if ((dep < 0) || (dep > depth)) continue; 159418c5995bSMatthew G. Knepley if (splitIS[dep]) {ierr = ISRestoreIndices(splitIS[dep], &splitPoints[dep]);CHKERRQ(ierr);} 159518c5995bSMatthew G. Knepley ierr = ISDestroy(&splitIS[dep]);CHKERRQ(ierr); 159618c5995bSMatthew G. Knepley if (unsplitIS[dep]) {ierr = ISRestoreIndices(unsplitIS[dep], &unsplitPoints[dep]);CHKERRQ(ierr);} 159718c5995bSMatthew G. Knepley ierr = ISDestroy(&unsplitIS[dep]);CHKERRQ(ierr); 1598cd0c2139SMatthew G Knepley } 1599cd0c2139SMatthew G Knepley if (label) { 1600cd0c2139SMatthew G Knepley ierr = ISRestoreIndices(valueIS, &values);CHKERRQ(ierr); 1601cd0c2139SMatthew G Knepley ierr = ISDestroy(&valueIS);CHKERRQ(ierr); 1602cd0c2139SMatthew G Knepley } 16030d4d4d06SMatthew G. Knepley for (d = 0; d <= depth; ++d) { 16040d4d4d06SMatthew G. Knepley ierr = DMPlexGetDepthStratum(sdm, d, NULL, &pEnd);CHKERRQ(ierr); 160536dbac82SMatthew G. Knepley pMaxNew[d] = pEnd - numHybridPoints[d] - numHybridPointsOld[d]; 16060d4d4d06SMatthew G. Knepley } 1607dcbb62e8SMatthew G. Knepley ierr = PetscFree3(coneNew, coneONew, supportNew);CHKERRQ(ierr); 16082582d50cSToby Isaac ierr = PetscFree5(depthMax, depthEnd, depthShift, pMaxNew, numHybridPointsOld);CHKERRQ(ierr); 160918c5995bSMatthew G. Knepley ierr = PetscFree7(splitIS, unsplitIS, numSplitPoints, numUnsplitPoints, numHybridPoints, splitPoints, unsplitPoints);CHKERRQ(ierr); 1610cd0c2139SMatthew G Knepley PetscFunctionReturn(0); 1611cd0c2139SMatthew G Knepley } 1612cd0c2139SMatthew G Knepley 1613cd0c2139SMatthew G Knepley /*@C 1614cd0c2139SMatthew G Knepley DMPlexConstructCohesiveCells - Construct cohesive cells which split the face along an internal interface 1615cd0c2139SMatthew G Knepley 1616cd0c2139SMatthew G Knepley Collective on dm 1617cd0c2139SMatthew G Knepley 1618cd0c2139SMatthew G Knepley Input Parameters: 1619cd0c2139SMatthew G Knepley + dm - The original DM 162053156dfcSMatthew G. Knepley - label - The label specifying the boundary faces (this could be auto-generated) 1621cd0c2139SMatthew G Knepley 1622cd0c2139SMatthew G Knepley Output Parameters: 16237db7e0a7SMatthew G. Knepley + splitLabel - The label containing the split points, or NULL if no output is desired 1624cd0c2139SMatthew G Knepley - dmSplit - The new DM 1625cd0c2139SMatthew G Knepley 1626cd0c2139SMatthew G Knepley Level: developer 1627cd0c2139SMatthew G Knepley 16282be2b188SMatthew G Knepley .seealso: DMCreate(), DMPlexLabelCohesiveComplete() 1629cd0c2139SMatthew G Knepley @*/ 16307db7e0a7SMatthew G. Knepley PetscErrorCode DMPlexConstructCohesiveCells(DM dm, DMLabel label, DMLabel splitLabel, DM *dmSplit) 1631cd0c2139SMatthew G Knepley { 1632cd0c2139SMatthew G Knepley DM sdm; 1633cd0c2139SMatthew G Knepley PetscInt dim; 1634cd0c2139SMatthew G Knepley PetscErrorCode ierr; 1635cd0c2139SMatthew G Knepley 1636cd0c2139SMatthew G Knepley PetscFunctionBegin; 1637cd0c2139SMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 1638064a246eSJacob Faibussowitsch PetscValidPointer(dmSplit, 4); 1639cd0c2139SMatthew G Knepley ierr = DMCreate(PetscObjectComm((PetscObject)dm), &sdm);CHKERRQ(ierr); 1640cd0c2139SMatthew G Knepley ierr = DMSetType(sdm, DMPLEX);CHKERRQ(ierr); 1641c73cfb54SMatthew G. Knepley ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr); 1642c73cfb54SMatthew G. Knepley ierr = DMSetDimension(sdm, dim);CHKERRQ(ierr); 1643cd0c2139SMatthew G Knepley switch (dim) { 1644cd0c2139SMatthew G Knepley case 2: 1645cd0c2139SMatthew G Knepley case 3: 16467db7e0a7SMatthew G. Knepley ierr = DMPlexConstructCohesiveCells_Internal(dm, label, splitLabel, sdm);CHKERRQ(ierr); 1647cd0c2139SMatthew G Knepley break; 1648cd0c2139SMatthew G Knepley default: 1649cd0c2139SMatthew G Knepley SETERRQ1(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Cannot construct cohesive cells for dimension %d", dim); 1650cd0c2139SMatthew G Knepley } 1651cd0c2139SMatthew G Knepley *dmSplit = sdm; 1652cd0c2139SMatthew G Knepley PetscFunctionReturn(0); 1653cd0c2139SMatthew G Knepley } 1654cd0c2139SMatthew G Knepley 16550f66a230SMatthew G. Knepley /* Returns the side of the surface for a given cell with a face on the surface */ 16560f66a230SMatthew G. Knepley static PetscErrorCode GetSurfaceSide_Static(DM dm, DM subdm, PetscInt numSubpoints, const PetscInt *subpoints, PetscInt cell, PetscInt face, PetscBool *pos) 16570f66a230SMatthew G. Knepley { 16580f66a230SMatthew G. Knepley const PetscInt *cone, *ornt; 16590f66a230SMatthew G. Knepley PetscInt dim, coneSize, c; 16600f66a230SMatthew G. Knepley PetscErrorCode ierr; 16610f66a230SMatthew G. Knepley 16620f66a230SMatthew G. Knepley PetscFunctionBegin; 16630f66a230SMatthew G. Knepley *pos = PETSC_TRUE; 1664c73cfb54SMatthew G. Knepley ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr); 16650f66a230SMatthew G. Knepley ierr = DMPlexGetConeSize(dm, cell, &coneSize);CHKERRQ(ierr); 16660f66a230SMatthew G. Knepley ierr = DMPlexGetCone(dm, cell, &cone);CHKERRQ(ierr); 16670f66a230SMatthew G. Knepley ierr = DMPlexGetConeOrientation(dm, cell, &ornt);CHKERRQ(ierr); 16680f66a230SMatthew G. Knepley for (c = 0; c < coneSize; ++c) { 16690f66a230SMatthew G. Knepley if (cone[c] == face) { 16700f66a230SMatthew G. Knepley PetscInt o = ornt[c]; 16710f66a230SMatthew G. Knepley 16720f66a230SMatthew G. Knepley if (subdm) { 16730f66a230SMatthew G. Knepley const PetscInt *subcone, *subornt; 16740f66a230SMatthew G. Knepley PetscInt subpoint, subface, subconeSize, sc; 16750f66a230SMatthew G. Knepley 16760f66a230SMatthew G. Knepley ierr = PetscFindInt(cell, numSubpoints, subpoints, &subpoint);CHKERRQ(ierr); 16770f66a230SMatthew G. Knepley ierr = PetscFindInt(face, numSubpoints, subpoints, &subface);CHKERRQ(ierr); 16780f66a230SMatthew G. Knepley ierr = DMPlexGetConeSize(subdm, subpoint, &subconeSize);CHKERRQ(ierr); 16790f66a230SMatthew G. Knepley ierr = DMPlexGetCone(subdm, subpoint, &subcone);CHKERRQ(ierr); 16800f66a230SMatthew G. Knepley ierr = DMPlexGetConeOrientation(subdm, subpoint, &subornt);CHKERRQ(ierr); 16810f66a230SMatthew G. Knepley for (sc = 0; sc < subconeSize; ++sc) { 16820f66a230SMatthew G. Knepley if (subcone[sc] == subface) { 16830f66a230SMatthew G. Knepley o = subornt[0]; 16840f66a230SMatthew G. Knepley break; 16850f66a230SMatthew G. Knepley } 16860f66a230SMatthew G. Knepley } 16870f66a230SMatthew G. Knepley if (sc >= subconeSize) SETERRQ4(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Could not find subpoint %d (%d) in cone for subpoint %d (%d)", subface, face, subpoint, cell); 16880f66a230SMatthew G. Knepley } 16890f66a230SMatthew G. Knepley if (o >= 0) *pos = PETSC_TRUE; 16900f66a230SMatthew G. Knepley else *pos = PETSC_FALSE; 16910f66a230SMatthew G. Knepley break; 16920f66a230SMatthew G. Knepley } 16930f66a230SMatthew G. Knepley } 16940f66a230SMatthew G. Knepley if (c == coneSize) SETERRQ2(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Cell %d in split face %d support does not have it in the cone", cell, face); 16950f66a230SMatthew G. Knepley PetscFunctionReturn(0); 16960f66a230SMatthew G. Knepley } 16970f66a230SMatthew G. Knepley 1698cd0c2139SMatthew G Knepley /*@ 16990f66a230SMatthew G. Knepley DMPlexLabelCohesiveComplete - Starting with a label marking points on an internal surface, we add all other mesh pieces 1700cd0c2139SMatthew G Knepley to complete the surface 1701cd0c2139SMatthew G Knepley 1702cd0c2139SMatthew G Knepley Input Parameters: 1703cd0c2139SMatthew G Knepley + dm - The DM 17040f66a230SMatthew G. Knepley . label - A DMLabel marking the surface 17050f66a230SMatthew G. Knepley . blabel - A DMLabel marking the vertices on the boundary which will not be duplicated, or NULL to find them automatically 1706bb55d314SMatthew G. Knepley . flip - Flag to flip the submesh normal and replace points on the other side 170747946fd8SMatthew G. Knepley - subdm - The subDM associated with the label, or NULL 1708cd0c2139SMatthew G Knepley 1709cd0c2139SMatthew G Knepley Output Parameter: 1710cd0c2139SMatthew G Knepley . label - A DMLabel marking all surface points 1711cd0c2139SMatthew G Knepley 17120f66a230SMatthew G. Knepley Note: The vertices in blabel are called "unsplit" in the terminology from hybrid cell creation. 17130f66a230SMatthew G. Knepley 1714cd0c2139SMatthew G Knepley Level: developer 1715cd0c2139SMatthew G Knepley 17162be2b188SMatthew G Knepley .seealso: DMPlexConstructCohesiveCells(), DMPlexLabelComplete() 1717cd0c2139SMatthew G Knepley @*/ 17180f66a230SMatthew G. Knepley PetscErrorCode DMPlexLabelCohesiveComplete(DM dm, DMLabel label, DMLabel blabel, PetscBool flip, DM subdm) 1719cd0c2139SMatthew G Knepley { 1720d90583fdSMatthew G. Knepley DMLabel depthLabel; 17218630cb1aSMatthew G. Knepley IS dimIS, subpointIS = NULL, facePosIS, faceNegIS, crossEdgeIS = NULL; 172247946fd8SMatthew G. Knepley const PetscInt *points, *subpoints; 1723bb55d314SMatthew G. Knepley const PetscInt rev = flip ? -1 : 1; 1724412e9a14SMatthew G. Knepley PetscInt shift = 100, shift2 = 200, dim, depth, dep, cStart, cEnd, vStart, vEnd, numPoints, numSubpoints, p, val; 1725cd0c2139SMatthew G Knepley PetscErrorCode ierr; 1726cd0c2139SMatthew G Knepley 1727cd0c2139SMatthew G Knepley PetscFunctionBegin; 1728370472baSMatthew G. Knepley ierr = DMPlexGetDepth(dm, &depth);CHKERRQ(ierr); 1729370472baSMatthew G. Knepley ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr); 1730d90583fdSMatthew G. Knepley ierr = DMPlexGetDepthLabel(dm, &depthLabel);CHKERRQ(ierr); 173147946fd8SMatthew G. Knepley if (subdm) { 173297d8846cSMatthew Knepley ierr = DMPlexGetSubpointIS(subdm, &subpointIS);CHKERRQ(ierr); 173347946fd8SMatthew G. Knepley if (subpointIS) { 173447946fd8SMatthew G. Knepley ierr = ISGetLocalSize(subpointIS, &numSubpoints);CHKERRQ(ierr); 173547946fd8SMatthew G. Knepley ierr = ISGetIndices(subpointIS, &subpoints);CHKERRQ(ierr); 173647946fd8SMatthew G. Knepley } 173747946fd8SMatthew G. Knepley } 1738d7c8f101SMatthew G. Knepley /* Mark cell on the fault, and its faces which touch the fault: cell orientation for face gives the side of the fault */ 1739cd0c2139SMatthew G Knepley ierr = DMLabelGetStratumIS(label, dim-1, &dimIS);CHKERRQ(ierr); 174097d8846cSMatthew Knepley if (!dimIS) PetscFunctionReturn(0); 1741cd0c2139SMatthew G Knepley ierr = ISGetLocalSize(dimIS, &numPoints);CHKERRQ(ierr); 1742cd0c2139SMatthew G Knepley ierr = ISGetIndices(dimIS, &points);CHKERRQ(ierr); 1743d7c8f101SMatthew G. Knepley for (p = 0; p < numPoints; ++p) { /* Loop over fault faces */ 1744cd0c2139SMatthew G Knepley const PetscInt *support; 1745cd0c2139SMatthew G Knepley PetscInt supportSize, s; 1746cd0c2139SMatthew G Knepley 1747cd0c2139SMatthew G Knepley ierr = DMPlexGetSupportSize(dm, points[p], &supportSize);CHKERRQ(ierr); 1748c4419245SMatthew G. Knepley #if 0 1749c4419245SMatthew G. Knepley if (supportSize != 2) { 1750c4419245SMatthew G. Knepley const PetscInt *lp; 1751c4419245SMatthew G. Knepley PetscInt Nlp, pind; 1752c4419245SMatthew G. Knepley 1753c4419245SMatthew G. Knepley /* Check that for a cell with a single support face, that face is in the SF */ 1754c4419245SMatthew G. Knepley /* THis check only works for the remote side. We would need root side information */ 1755c4419245SMatthew G. Knepley ierr = PetscSFGetGraph(dm->sf, NULL, &Nlp, &lp, NULL);CHKERRQ(ierr); 1756c4419245SMatthew G. Knepley ierr = PetscFindInt(points[p], Nlp, lp, &pind);CHKERRQ(ierr); 1757c4419245SMatthew G. Knepley if (pind < 0) SETERRQ2(PetscObjectComm((PetscObject) dm), PETSC_ERR_ARG_WRONG, "Split face %d has %d != 2 supports, and the face is not shared with another process", points[p], supportSize); 1758c4419245SMatthew G. Knepley } 1759c4419245SMatthew G. Knepley #endif 1760cd0c2139SMatthew G Knepley ierr = DMPlexGetSupport(dm, points[p], &support);CHKERRQ(ierr); 1761cd0c2139SMatthew G Knepley for (s = 0; s < supportSize; ++s) { 17620f66a230SMatthew G. Knepley const PetscInt *cone; 1763cd0c2139SMatthew G Knepley PetscInt coneSize, c; 17640f66a230SMatthew G. Knepley PetscBool pos; 1765cd0c2139SMatthew G Knepley 17660f66a230SMatthew G. Knepley ierr = GetSurfaceSide_Static(dm, subdm, numSubpoints, subpoints, support[s], points[p], &pos);CHKERRQ(ierr); 17670f66a230SMatthew G. Knepley if (pos) {ierr = DMLabelSetValue(label, support[s], rev*(shift+dim));CHKERRQ(ierr);} 17680f66a230SMatthew G. Knepley else {ierr = DMLabelSetValue(label, support[s], -rev*(shift+dim));CHKERRQ(ierr);} 17690f66a230SMatthew G. Knepley if (rev < 0) pos = !pos ? PETSC_TRUE : PETSC_FALSE; 17700f66a230SMatthew G. Knepley /* Put faces touching the fault in the label */ 1771cd0c2139SMatthew G Knepley ierr = DMPlexGetConeSize(dm, support[s], &coneSize);CHKERRQ(ierr); 1772cd0c2139SMatthew G Knepley ierr = DMPlexGetCone(dm, support[s], &cone);CHKERRQ(ierr); 1773cd0c2139SMatthew G Knepley for (c = 0; c < coneSize; ++c) { 1774cd0c2139SMatthew G Knepley const PetscInt point = cone[c]; 1775cd0c2139SMatthew G Knepley 1776cd0c2139SMatthew G Knepley ierr = DMLabelGetValue(label, point, &val);CHKERRQ(ierr); 1777cd0c2139SMatthew G Knepley if (val == -1) { 1778cd0c2139SMatthew G Knepley PetscInt *closure = NULL; 1779cd0c2139SMatthew G Knepley PetscInt closureSize, cl; 1780cd0c2139SMatthew G Knepley 1781cd0c2139SMatthew G Knepley ierr = DMPlexGetTransitiveClosure(dm, point, PETSC_TRUE, &closureSize, &closure);CHKERRQ(ierr); 1782cd0c2139SMatthew G Knepley for (cl = 0; cl < closureSize*2; cl += 2) { 1783cd0c2139SMatthew G Knepley const PetscInt clp = closure[cl]; 1784a0541d8aSMatthew G. Knepley PetscInt bval = -1; 1785cd0c2139SMatthew G Knepley 1786cd0c2139SMatthew G Knepley ierr = DMLabelGetValue(label, clp, &val);CHKERRQ(ierr); 1787a0541d8aSMatthew G. Knepley if (blabel) {ierr = DMLabelGetValue(blabel, clp, &bval);CHKERRQ(ierr);} 1788a0541d8aSMatthew G. Knepley if ((val >= 0) && (val < dim-1) && (bval < 0)) { 1789cd0c2139SMatthew G Knepley ierr = DMLabelSetValue(label, point, pos == PETSC_TRUE ? shift+dim-1 : -(shift+dim-1));CHKERRQ(ierr); 1790cd0c2139SMatthew G Knepley break; 1791cd0c2139SMatthew G Knepley } 1792cd0c2139SMatthew G Knepley } 1793cd0c2139SMatthew G Knepley ierr = DMPlexRestoreTransitiveClosure(dm, point, PETSC_TRUE, &closureSize, &closure);CHKERRQ(ierr); 1794cd0c2139SMatthew G Knepley } 1795cd0c2139SMatthew G Knepley } 1796cd0c2139SMatthew G Knepley } 1797cd0c2139SMatthew G Knepley } 17980f66a230SMatthew G. Knepley ierr = ISRestoreIndices(dimIS, &points);CHKERRQ(ierr); 17990f66a230SMatthew G. Knepley ierr = ISDestroy(&dimIS);CHKERRQ(ierr); 180047946fd8SMatthew G. Knepley if (subpointIS) {ierr = ISRestoreIndices(subpointIS, &subpoints);CHKERRQ(ierr);} 1801a0541d8aSMatthew G. Knepley /* Mark boundary points as unsplit */ 180286200784SMatthew G. Knepley if (blabel) { 1803a0541d8aSMatthew G. Knepley ierr = DMLabelGetStratumIS(blabel, 1, &dimIS);CHKERRQ(ierr); 1804a0541d8aSMatthew G. Knepley ierr = ISGetLocalSize(dimIS, &numPoints);CHKERRQ(ierr); 1805a0541d8aSMatthew G. Knepley ierr = ISGetIndices(dimIS, &points);CHKERRQ(ierr); 1806a0541d8aSMatthew G. Knepley for (p = 0; p < numPoints; ++p) { 1807a0541d8aSMatthew G. Knepley const PetscInt point = points[p]; 1808a0541d8aSMatthew G. Knepley PetscInt val, bval; 1809a0541d8aSMatthew G. Knepley 1810a0541d8aSMatthew G. Knepley ierr = DMLabelGetValue(blabel, point, &bval);CHKERRQ(ierr); 1811a0541d8aSMatthew G. Knepley if (bval >= 0) { 1812f7019248SMatthew G. Knepley ierr = DMLabelGetValue(label, point, &val);CHKERRQ(ierr); 1813f7019248SMatthew G. Knepley if ((val < 0) || (val > dim)) { 1814f7019248SMatthew G. Knepley /* This could be a point added from splitting a vertex on an adjacent fault, otherwise its just wrong */ 1815f7019248SMatthew G. Knepley ierr = DMLabelClearValue(blabel, point, bval);CHKERRQ(ierr); 1816f7019248SMatthew G. Knepley } 1817f7019248SMatthew G. Knepley } 1818f7019248SMatthew G. Knepley } 1819f7019248SMatthew G. Knepley for (p = 0; p < numPoints; ++p) { 1820f7019248SMatthew G. Knepley const PetscInt point = points[p]; 1821f7019248SMatthew G. Knepley PetscInt val, bval; 1822f7019248SMatthew G. Knepley 1823f7019248SMatthew G. Knepley ierr = DMLabelGetValue(blabel, point, &bval);CHKERRQ(ierr); 1824f7019248SMatthew G. Knepley if (bval >= 0) { 182586200784SMatthew G. Knepley const PetscInt *cone, *support; 182686200784SMatthew G. Knepley PetscInt coneSize, supportSize, s, valA, valB, valE; 182786200784SMatthew G. Knepley 1828a0541d8aSMatthew G. Knepley /* Mark as unsplit */ 1829a0541d8aSMatthew G. Knepley ierr = DMLabelGetValue(label, point, &val);CHKERRQ(ierr); 1830a0541d8aSMatthew G. Knepley if ((val < 0) || (val > dim)) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Point %d has label value %d, should be part of the fault", point, val); 1831a0541d8aSMatthew G. Knepley ierr = DMLabelClearValue(label, point, val);CHKERRQ(ierr); 1832a0541d8aSMatthew G. Knepley ierr = DMLabelSetValue(label, point, shift2+val);CHKERRQ(ierr); 18332c06a818SMatthew G. Knepley /* Check for cross-edge 18342c06a818SMatthew G. Knepley A cross-edge has endpoints which are both on the boundary of the surface, but the edge itself is not. */ 183586200784SMatthew G. Knepley if (val != 0) continue; 183686200784SMatthew G. Knepley ierr = DMPlexGetSupport(dm, point, &support);CHKERRQ(ierr); 183786200784SMatthew G. Knepley ierr = DMPlexGetSupportSize(dm, point, &supportSize);CHKERRQ(ierr); 183886200784SMatthew G. Knepley for (s = 0; s < supportSize; ++s) { 183986200784SMatthew G. Knepley ierr = DMPlexGetCone(dm, support[s], &cone);CHKERRQ(ierr); 184086200784SMatthew G. Knepley ierr = DMPlexGetConeSize(dm, support[s], &coneSize);CHKERRQ(ierr); 184186200784SMatthew G. Knepley if (coneSize != 2) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Edge %D has %D vertices != 2", support[s], coneSize); 184286200784SMatthew G. Knepley ierr = DMLabelGetValue(blabel, cone[0], &valA);CHKERRQ(ierr); 184386200784SMatthew G. Knepley ierr = DMLabelGetValue(blabel, cone[1], &valB);CHKERRQ(ierr); 184486200784SMatthew G. Knepley ierr = DMLabelGetValue(blabel, support[s], &valE);CHKERRQ(ierr); 184509816f77SMatthew G. Knepley if ((valE < 0) && (valA >= 0) && (valB >= 0) && (cone[0] != cone[1])) {ierr = DMLabelSetValue(blabel, support[s], 2);CHKERRQ(ierr);} 184686200784SMatthew G. Knepley } 1847a0541d8aSMatthew G. Knepley } 1848a0541d8aSMatthew G. Knepley } 1849a0541d8aSMatthew G. Knepley ierr = ISRestoreIndices(dimIS, &points);CHKERRQ(ierr); 1850a0541d8aSMatthew G. Knepley ierr = ISDestroy(&dimIS);CHKERRQ(ierr); 1851a0541d8aSMatthew G. Knepley } 1852cd0c2139SMatthew G Knepley /* Search for other cells/faces/edges connected to the fault by a vertex */ 1853c4d480a2SMatthew G. Knepley ierr = DMPlexGetDepthStratum(dm, 0, &vStart, &vEnd);CHKERRQ(ierr); 1854412e9a14SMatthew G. Knepley ierr = DMPlexGetSimplexOrBoxCells(dm, 0, &cStart, &cEnd);CHKERRQ(ierr); 1855cd0c2139SMatthew G Knepley ierr = DMLabelGetStratumIS(label, 0, &dimIS);CHKERRQ(ierr); 185686200784SMatthew G. Knepley if (blabel) {ierr = DMLabelGetStratumIS(blabel, 2, &crossEdgeIS);CHKERRQ(ierr);} 185786200784SMatthew G. Knepley if (dimIS && crossEdgeIS) { 185886200784SMatthew G. Knepley IS vertIS = dimIS; 185986200784SMatthew G. Knepley 186086200784SMatthew G. Knepley ierr = ISExpand(vertIS, crossEdgeIS, &dimIS);CHKERRQ(ierr); 186186200784SMatthew G. Knepley ierr = ISDestroy(&crossEdgeIS);CHKERRQ(ierr); 186286200784SMatthew G. Knepley ierr = ISDestroy(&vertIS);CHKERRQ(ierr); 186386200784SMatthew G. Knepley } 1864dc86033cSMatthew G. Knepley if (!dimIS) { 1865dc86033cSMatthew G. Knepley PetscFunctionReturn(0); 1866dc86033cSMatthew G. Knepley } 1867cd0c2139SMatthew G Knepley ierr = ISGetLocalSize(dimIS, &numPoints);CHKERRQ(ierr); 1868cd0c2139SMatthew G Knepley ierr = ISGetIndices(dimIS, &points);CHKERRQ(ierr); 1869d7c8f101SMatthew G. Knepley for (p = 0; p < numPoints; ++p) { /* Loop over fault vertices */ 1870cd0c2139SMatthew G Knepley PetscInt *star = NULL; 187186200784SMatthew G. Knepley PetscInt starSize, s; 1872cd0c2139SMatthew G Knepley PetscInt again = 1; /* 0: Finished 1: Keep iterating after a change 2: No change */ 1873cd0c2139SMatthew G Knepley 1874d4622b2cSMatthew G. Knepley /* All points connected to the fault are inside a cell, so at the top level we will only check cells */ 1875cd0c2139SMatthew G Knepley ierr = DMPlexGetTransitiveClosure(dm, points[p], PETSC_FALSE, &starSize, &star);CHKERRQ(ierr); 1876cd0c2139SMatthew G Knepley while (again) { 1877cd0c2139SMatthew G Knepley if (again > 1) SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_PLIB, "Could not classify all cells connected to the fault"); 1878cd0c2139SMatthew G Knepley again = 0; 1879cd0c2139SMatthew G Knepley for (s = 0; s < starSize*2; s += 2) { 1880cd0c2139SMatthew G Knepley const PetscInt point = star[s]; 1881cd0c2139SMatthew G Knepley const PetscInt *cone; 1882cd0c2139SMatthew G Knepley PetscInt coneSize, c; 1883cd0c2139SMatthew G Knepley 1884412e9a14SMatthew G. Knepley if ((point < cStart) || (point >= cEnd)) continue; 1885cd0c2139SMatthew G Knepley ierr = DMLabelGetValue(label, point, &val);CHKERRQ(ierr); 1886cd0c2139SMatthew G Knepley if (val != -1) continue; 1887d4622b2cSMatthew G. Knepley again = again == 1 ? 1 : 2; 1888cd0c2139SMatthew G Knepley ierr = DMPlexGetConeSize(dm, point, &coneSize);CHKERRQ(ierr); 1889cd0c2139SMatthew G Knepley ierr = DMPlexGetCone(dm, point, &cone);CHKERRQ(ierr); 1890cd0c2139SMatthew G Knepley for (c = 0; c < coneSize; ++c) { 1891cd0c2139SMatthew G Knepley ierr = DMLabelGetValue(label, cone[c], &val);CHKERRQ(ierr); 1892cd0c2139SMatthew G Knepley if (val != -1) { 1893d7c8f101SMatthew G. Knepley const PetscInt *ccone; 1894166d9d0cSMatthew G. Knepley PetscInt cconeSize, cc, side; 1895d7c8f101SMatthew G. Knepley 1896db8edaafSMatthew G. Knepley if (PetscAbs(val) < shift) SETERRQ3(PetscObjectComm((PetscObject)dm), PETSC_ERR_PLIB, "Face %d on cell %d has an invalid label %d", cone[c], point, val); 189737a6de01SMatthew G. Knepley if (val > 0) side = 1; 189837a6de01SMatthew G. Knepley else side = -1; 189937a6de01SMatthew G. Knepley ierr = DMLabelSetValue(label, point, side*(shift+dim));CHKERRQ(ierr); 1900d7c8f101SMatthew G. Knepley /* Mark cell faces which touch the fault */ 1901d7c8f101SMatthew G. Knepley ierr = DMPlexGetConeSize(dm, point, &cconeSize);CHKERRQ(ierr); 1902d7c8f101SMatthew G. Knepley ierr = DMPlexGetCone(dm, point, &ccone);CHKERRQ(ierr); 1903d7c8f101SMatthew G. Knepley for (cc = 0; cc < cconeSize; ++cc) { 1904d7c8f101SMatthew G. Knepley PetscInt *closure = NULL; 1905d7c8f101SMatthew G. Knepley PetscInt closureSize, cl; 1906d7c8f101SMatthew G. Knepley 1907166d9d0cSMatthew G. Knepley ierr = DMLabelGetValue(label, ccone[cc], &val);CHKERRQ(ierr); 1908166d9d0cSMatthew G. Knepley if (val != -1) continue; 1909d7c8f101SMatthew G. Knepley ierr = DMPlexGetTransitiveClosure(dm, ccone[cc], PETSC_TRUE, &closureSize, &closure);CHKERRQ(ierr); 1910d4622b2cSMatthew G. Knepley for (cl = 0; cl < closureSize*2; cl += 2) { 1911d7c8f101SMatthew G. Knepley const PetscInt clp = closure[cl]; 1912d7c8f101SMatthew G. Knepley 1913d7c8f101SMatthew G. Knepley ierr = DMLabelGetValue(label, clp, &val);CHKERRQ(ierr); 1914d7c8f101SMatthew G. Knepley if (val == -1) continue; 1915d7c8f101SMatthew G. Knepley ierr = DMLabelSetValue(label, ccone[cc], side*(shift+dim-1));CHKERRQ(ierr); 191637a6de01SMatthew G. Knepley break; 191737a6de01SMatthew G. Knepley } 1918d7c8f101SMatthew G. Knepley ierr = DMPlexRestoreTransitiveClosure(dm, ccone[cc], PETSC_TRUE, &closureSize, &closure);CHKERRQ(ierr); 1919cd0c2139SMatthew G Knepley } 1920cd0c2139SMatthew G Knepley again = 1; 1921cd0c2139SMatthew G Knepley break; 1922cd0c2139SMatthew G Knepley } 1923cd0c2139SMatthew G Knepley } 1924cd0c2139SMatthew G Knepley } 1925cd0c2139SMatthew G Knepley } 1926cd0c2139SMatthew G Knepley /* Classify the rest by cell membership */ 1927cd0c2139SMatthew G Knepley for (s = 0; s < starSize*2; s += 2) { 1928cd0c2139SMatthew G Knepley const PetscInt point = star[s]; 1929cd0c2139SMatthew G Knepley 1930cd0c2139SMatthew G Knepley ierr = DMLabelGetValue(label, point, &val);CHKERRQ(ierr); 1931cd0c2139SMatthew G Knepley if (val == -1) { 1932cd0c2139SMatthew G Knepley PetscInt *sstar = NULL; 1933cd0c2139SMatthew G Knepley PetscInt sstarSize, ss; 1934412e9a14SMatthew G. Knepley PetscBool marked = PETSC_FALSE, isHybrid; 1935cd0c2139SMatthew G Knepley 1936cd0c2139SMatthew G Knepley ierr = DMPlexGetTransitiveClosure(dm, point, PETSC_FALSE, &sstarSize, &sstar);CHKERRQ(ierr); 1937cd0c2139SMatthew G Knepley for (ss = 0; ss < sstarSize*2; ss += 2) { 1938cd0c2139SMatthew G Knepley const PetscInt spoint = sstar[ss]; 1939cd0c2139SMatthew G Knepley 1940412e9a14SMatthew G. Knepley if ((spoint < cStart) || (spoint >= cEnd)) continue; 1941cd0c2139SMatthew G Knepley ierr = DMLabelGetValue(label, spoint, &val);CHKERRQ(ierr); 1942cd0c2139SMatthew G Knepley if (val == -1) SETERRQ2(PetscObjectComm((PetscObject)dm), PETSC_ERR_PLIB, "Cell %d in star of %d does not have a valid label", spoint, point); 1943d90583fdSMatthew G. Knepley ierr = DMLabelGetValue(depthLabel, point, &dep);CHKERRQ(ierr); 1944cd0c2139SMatthew G Knepley if (val > 0) { 1945cd0c2139SMatthew G Knepley ierr = DMLabelSetValue(label, point, shift+dep);CHKERRQ(ierr); 1946cd0c2139SMatthew G Knepley } else { 1947cd0c2139SMatthew G Knepley ierr = DMLabelSetValue(label, point, -(shift+dep));CHKERRQ(ierr); 1948cd0c2139SMatthew G Knepley } 1949cd0c2139SMatthew G Knepley marked = PETSC_TRUE; 1950cd0c2139SMatthew G Knepley break; 1951cd0c2139SMatthew G Knepley } 1952cd0c2139SMatthew G Knepley ierr = DMPlexRestoreTransitiveClosure(dm, point, PETSC_FALSE, &sstarSize, &sstar);CHKERRQ(ierr); 1953412e9a14SMatthew G. Knepley ierr = DMPlexCellIsHybrid_Internal(dm, point, &isHybrid);CHKERRQ(ierr); 1954412e9a14SMatthew G. Knepley if (!isHybrid && !marked) SETERRQ1(PetscObjectComm((PetscObject)dm), PETSC_ERR_PLIB, "Point %d could not be classified", point); 1955cd0c2139SMatthew G Knepley } 1956cd0c2139SMatthew G Knepley } 1957cd0c2139SMatthew G Knepley ierr = DMPlexRestoreTransitiveClosure(dm, points[p], PETSC_FALSE, &starSize, &star);CHKERRQ(ierr); 1958cd0c2139SMatthew G Knepley } 1959cd0c2139SMatthew G Knepley ierr = ISRestoreIndices(dimIS, &points);CHKERRQ(ierr); 1960cd0c2139SMatthew G Knepley ierr = ISDestroy(&dimIS);CHKERRQ(ierr); 196118c5995bSMatthew G. Knepley /* If any faces touching the fault divide cells on either side, split them */ 196218c5995bSMatthew G. Knepley ierr = DMLabelGetStratumIS(label, shift+dim-1, &facePosIS);CHKERRQ(ierr); 196318c5995bSMatthew G. Knepley ierr = DMLabelGetStratumIS(label, -(shift+dim-1), &faceNegIS);CHKERRQ(ierr); 196418c5995bSMatthew G. Knepley ierr = ISExpand(facePosIS, faceNegIS, &dimIS);CHKERRQ(ierr); 196518c5995bSMatthew G. Knepley ierr = ISDestroy(&facePosIS);CHKERRQ(ierr); 196618c5995bSMatthew G. Knepley ierr = ISDestroy(&faceNegIS);CHKERRQ(ierr); 196718c5995bSMatthew G. Knepley ierr = ISGetLocalSize(dimIS, &numPoints);CHKERRQ(ierr); 196818c5995bSMatthew G. Knepley ierr = ISGetIndices(dimIS, &points);CHKERRQ(ierr); 196918c5995bSMatthew G. Knepley for (p = 0; p < numPoints; ++p) { 197018c5995bSMatthew G. Knepley const PetscInt point = points[p]; 197118c5995bSMatthew G. Knepley const PetscInt *support; 197218c5995bSMatthew G. Knepley PetscInt supportSize, valA, valB; 197318c5995bSMatthew G. Knepley 197418c5995bSMatthew G. Knepley ierr = DMPlexGetSupportSize(dm, point, &supportSize);CHKERRQ(ierr); 197518c5995bSMatthew G. Knepley if (supportSize != 2) continue; 197618c5995bSMatthew G. Knepley ierr = DMPlexGetSupport(dm, point, &support);CHKERRQ(ierr); 197718c5995bSMatthew G. Knepley ierr = DMLabelGetValue(label, support[0], &valA);CHKERRQ(ierr); 197818c5995bSMatthew G. Knepley ierr = DMLabelGetValue(label, support[1], &valB);CHKERRQ(ierr); 197918c5995bSMatthew G. Knepley if ((valA == -1) || (valB == -1)) continue; 198018c5995bSMatthew G. Knepley if (valA*valB > 0) continue; 198118c5995bSMatthew G. Knepley /* Split the face */ 198218c5995bSMatthew G. Knepley ierr = DMLabelGetValue(label, point, &valA);CHKERRQ(ierr); 198318c5995bSMatthew G. Knepley ierr = DMLabelClearValue(label, point, valA);CHKERRQ(ierr); 198418c5995bSMatthew G. Knepley ierr = DMLabelSetValue(label, point, dim-1);CHKERRQ(ierr); 1985e1757548SMatthew G. Knepley /* Label its closure: 1986e1757548SMatthew G. Knepley unmarked: label as unsplit 1987e1757548SMatthew G. Knepley incident: relabel as split 1988e1757548SMatthew G. Knepley split: do nothing 1989e1757548SMatthew G. Knepley */ 199018c5995bSMatthew G. Knepley { 199118c5995bSMatthew G. Knepley PetscInt *closure = NULL; 199218c5995bSMatthew G. Knepley PetscInt closureSize, cl; 199318c5995bSMatthew G. Knepley 199418c5995bSMatthew G. Knepley ierr = DMPlexGetTransitiveClosure(dm, point, PETSC_TRUE, &closureSize, &closure);CHKERRQ(ierr); 199518c5995bSMatthew G. Knepley for (cl = 0; cl < closureSize*2; cl += 2) { 199618c5995bSMatthew G. Knepley ierr = DMLabelGetValue(label, closure[cl], &valA);CHKERRQ(ierr); 19978771c1d3SMatthew G. Knepley if (valA == -1) { /* Mark as unsplit */ 199818c5995bSMatthew G. Knepley ierr = DMLabelGetValue(depthLabel, closure[cl], &dep);CHKERRQ(ierr); 199918c5995bSMatthew G. Knepley ierr = DMLabelSetValue(label, closure[cl], shift2+dep);CHKERRQ(ierr); 20008771c1d3SMatthew G. Knepley } else if (((valA >= shift) && (valA < shift2)) || ((valA <= -shift) && (valA > -shift2))) { 2001e1757548SMatthew G. Knepley ierr = DMLabelGetValue(depthLabel, closure[cl], &dep);CHKERRQ(ierr); 2002e1757548SMatthew G. Knepley ierr = DMLabelClearValue(label, closure[cl], valA);CHKERRQ(ierr); 2003e1757548SMatthew G. Knepley ierr = DMLabelSetValue(label, closure[cl], dep);CHKERRQ(ierr); 2004e1757548SMatthew G. Knepley } 200518c5995bSMatthew G. Knepley } 200618c5995bSMatthew G. Knepley ierr = DMPlexRestoreTransitiveClosure(dm, point, PETSC_TRUE, &closureSize, &closure);CHKERRQ(ierr); 200718c5995bSMatthew G. Knepley } 200818c5995bSMatthew G. Knepley } 200918c5995bSMatthew G. Knepley ierr = ISRestoreIndices(dimIS, &points);CHKERRQ(ierr); 201018c5995bSMatthew G. Knepley ierr = ISDestroy(&dimIS);CHKERRQ(ierr); 2011cd0c2139SMatthew G Knepley PetscFunctionReturn(0); 2012cd0c2139SMatthew G Knepley } 2013cd0c2139SMatthew G Knepley 2014720e594eSMatthew G. Knepley /* Check that no cell have all vertices on the fault */ 2015720e594eSMatthew G. Knepley PetscErrorCode DMPlexCheckValidSubmesh_Private(DM dm, DMLabel label, DM subdm) 2016720e594eSMatthew G. Knepley { 2017720e594eSMatthew G. Knepley IS subpointIS; 2018720e594eSMatthew G. Knepley const PetscInt *dmpoints; 2019720e594eSMatthew G. Knepley PetscInt defaultValue, cStart, cEnd, c, vStart, vEnd; 2020720e594eSMatthew G. Knepley PetscErrorCode ierr; 2021720e594eSMatthew G. Knepley 2022720e594eSMatthew G. Knepley PetscFunctionBegin; 2023720e594eSMatthew G. Knepley if (!label) PetscFunctionReturn(0); 2024720e594eSMatthew G. Knepley ierr = DMLabelGetDefaultValue(label, &defaultValue);CHKERRQ(ierr); 202597d8846cSMatthew Knepley ierr = DMPlexGetSubpointIS(subdm, &subpointIS);CHKERRQ(ierr); 2026720e594eSMatthew G. Knepley if (!subpointIS) PetscFunctionReturn(0); 2027720e594eSMatthew G. Knepley ierr = DMPlexGetHeightStratum(subdm, 0, &cStart, &cEnd);CHKERRQ(ierr); 2028720e594eSMatthew G. Knepley ierr = DMPlexGetDepthStratum(dm, 0, &vStart, &vEnd);CHKERRQ(ierr); 2029720e594eSMatthew G. Knepley ierr = ISGetIndices(subpointIS, &dmpoints);CHKERRQ(ierr); 2030720e594eSMatthew G. Knepley for (c = cStart; c < cEnd; ++c) { 2031720e594eSMatthew G. Knepley PetscBool invalidCell = PETSC_TRUE; 2032720e594eSMatthew G. Knepley PetscInt *closure = NULL; 2033720e594eSMatthew G. Knepley PetscInt closureSize, cl; 2034720e594eSMatthew G. Knepley 2035720e594eSMatthew G. Knepley ierr = DMPlexGetTransitiveClosure(dm, dmpoints[c], PETSC_TRUE, &closureSize, &closure);CHKERRQ(ierr); 2036720e594eSMatthew G. Knepley for (cl = 0; cl < closureSize*2; cl += 2) { 2037720e594eSMatthew G. Knepley PetscInt value = 0; 2038720e594eSMatthew G. Knepley 2039720e594eSMatthew G. Knepley if ((closure[cl] < vStart) || (closure[cl] >= vEnd)) continue; 2040720e594eSMatthew G. Knepley ierr = DMLabelGetValue(label, closure[cl], &value);CHKERRQ(ierr); 2041720e594eSMatthew G. Knepley if (value == defaultValue) {invalidCell = PETSC_FALSE; break;} 2042720e594eSMatthew G. Knepley } 2043720e594eSMatthew G. Knepley ierr = DMPlexRestoreTransitiveClosure(dm, dmpoints[c], PETSC_TRUE, &closureSize, &closure);CHKERRQ(ierr); 2044720e594eSMatthew G. Knepley if (invalidCell) { 2045720e594eSMatthew G. Knepley ierr = ISRestoreIndices(subpointIS, &dmpoints);CHKERRQ(ierr); 2046720e594eSMatthew G. Knepley ierr = ISDestroy(&subpointIS);CHKERRQ(ierr); 2047720e594eSMatthew G. Knepley ierr = DMDestroy(&subdm);CHKERRQ(ierr); 2048720e594eSMatthew G. Knepley SETERRQ1(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Ambiguous submesh. Cell %D has all of its vertices on the submesh.", dmpoints[c]); 2049720e594eSMatthew G. Knepley } 2050720e594eSMatthew G. Knepley } 2051720e594eSMatthew G. Knepley ierr = ISRestoreIndices(subpointIS, &dmpoints);CHKERRQ(ierr); 2052720e594eSMatthew G. Knepley PetscFunctionReturn(0); 2053720e594eSMatthew G. Knepley } 2054720e594eSMatthew G. Knepley 2055720e594eSMatthew G. Knepley 2056c08575a3SMatthew G. Knepley /*@ 20573cf72582SMatthew G. Knepley DMPlexCreateHybridMesh - Create a mesh with hybrid cells along an internal interface 20583cf72582SMatthew G. Knepley 20593cf72582SMatthew G. Knepley Collective on dm 20603cf72582SMatthew G. Knepley 20613cf72582SMatthew G. Knepley Input Parameters: 20623cf72582SMatthew G. Knepley + dm - The original DM 2063720e594eSMatthew G. Knepley . label - The label specifying the interface vertices 2064720e594eSMatthew G. Knepley - bdlabel - The optional label specifying the interface boundary vertices 20653cf72582SMatthew G. Knepley 20663cf72582SMatthew G. Knepley Output Parameters: 20677db7e0a7SMatthew G. Knepley + hybridLabel - The label fully marking the interface, or NULL if no output is desired 20687db7e0a7SMatthew G. Knepley . splitLabel - The label containing the split points, or NULL if no output is desired 2069720e594eSMatthew G. Knepley . dmInterface - The new interface DM, or NULL 2070720e594eSMatthew G. Knepley - dmHybrid - The new DM with cohesive cells 20713cf72582SMatthew G. Knepley 20726eccb800SMatthew Knepley Note: The hybridLabel indicates what parts of the original mesh impinged on the on division surface. For points 20736eccb800SMatthew Knepley directly on the division surface, they are labeled with their dimension, so an edge 7 on the division surface would be 20746eccb800SMatthew Knepley 7 (1) in hybridLabel. For points that impinge from the positive side, they are labeled with 100+dim, so an edge 6 with 20756eccb800SMatthew Knepley one vertex 3 on the surface would be 6 (101) and 3 (0) in hybridLabel. If an edge 9 from the negative side of the 20766eccb800SMatthew Knepley surface also hits vertex 3, it would be 9 (-101) in hybridLabel. 20776eccb800SMatthew Knepley 20786eccb800SMatthew Knepley The splitLabel indicates what points in the new hybrid mesh were the result of splitting points in the original 20796eccb800SMatthew Knepley mesh. The label value is +=100+dim for each point. For example, if two edges 10 and 14 in the hybrid resulting from 20806eccb800SMatthew Knepley splitting an edge in the original mesh, you would have 10 (101) and 14 (-101) in the splitLabel. 20816eccb800SMatthew Knepley 20826eccb800SMatthew Knepley The dmInterface is a DM built from the original division surface. It has a label which can be retrieved using 20836eccb800SMatthew Knepley DMPlexGetSubpointMap() which maps each point back to the point in the surface of the original mesh. 20846eccb800SMatthew Knepley 20853cf72582SMatthew G. Knepley Level: developer 20863cf72582SMatthew G. Knepley 20876eccb800SMatthew Knepley .seealso: DMPlexConstructCohesiveCells(), DMPlexLabelCohesiveComplete(), DMPlexGetSubpointMap(), DMCreate() 20883cf72582SMatthew G. Knepley @*/ 20897db7e0a7SMatthew G. Knepley PetscErrorCode DMPlexCreateHybridMesh(DM dm, DMLabel label, DMLabel bdlabel, DMLabel *hybridLabel, DMLabel *splitLabel, DM *dmInterface, DM *dmHybrid) 20903cf72582SMatthew G. Knepley { 20913cf72582SMatthew G. Knepley DM idm; 20927db7e0a7SMatthew G. Knepley DMLabel subpointMap, hlabel, slabel = NULL; 20933cf72582SMatthew G. Knepley PetscInt dim; 20943cf72582SMatthew G. Knepley PetscErrorCode ierr; 20953cf72582SMatthew G. Knepley 20963cf72582SMatthew G. Knepley PetscFunctionBegin; 20973cf72582SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 2098720e594eSMatthew G. Knepley if (bdlabel) PetscValidPointer(bdlabel, 3); 2099720e594eSMatthew G. Knepley if (hybridLabel) PetscValidPointer(hybridLabel, 4); 21007db7e0a7SMatthew G. Knepley if (splitLabel) PetscValidPointer(splitLabel, 5); 21017db7e0a7SMatthew G. Knepley if (dmInterface) PetscValidPointer(dmInterface, 6); 21027db7e0a7SMatthew G. Knepley PetscValidPointer(dmHybrid, 7); 2103c73cfb54SMatthew G. Knepley ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr); 2104158acfadSMatthew G. Knepley ierr = DMPlexCreateSubmesh(dm, label, 1, PETSC_FALSE, &idm);CHKERRQ(ierr); 2105720e594eSMatthew G. Knepley ierr = DMPlexCheckValidSubmesh_Private(dm, label, idm);CHKERRQ(ierr); 21063cf72582SMatthew G. Knepley ierr = DMPlexOrient(idm);CHKERRQ(ierr); 21073cf72582SMatthew G. Knepley ierr = DMPlexGetSubpointMap(idm, &subpointMap);CHKERRQ(ierr); 21083cf72582SMatthew G. Knepley ierr = DMLabelDuplicate(subpointMap, &hlabel);CHKERRQ(ierr); 21093cf72582SMatthew G. Knepley ierr = DMLabelClearStratum(hlabel, dim);CHKERRQ(ierr); 21107db7e0a7SMatthew G. Knepley if (splitLabel) { 21117db7e0a7SMatthew G. Knepley const char *name; 21127db7e0a7SMatthew G. Knepley char sname[PETSC_MAX_PATH_LEN]; 21137db7e0a7SMatthew G. Knepley 2114d67d17b1SMatthew G. Knepley ierr = PetscObjectGetName((PetscObject) hlabel, &name);CHKERRQ(ierr); 21157db7e0a7SMatthew G. Knepley ierr = PetscStrncpy(sname, name, PETSC_MAX_PATH_LEN);CHKERRQ(ierr); 21167db7e0a7SMatthew G. Knepley ierr = PetscStrcat(sname, " split");CHKERRQ(ierr); 2117d67d17b1SMatthew G. Knepley ierr = DMLabelCreate(PETSC_COMM_SELF, sname, &slabel);CHKERRQ(ierr); 21187db7e0a7SMatthew G. Knepley } 2119720e594eSMatthew G. Knepley ierr = DMPlexLabelCohesiveComplete(dm, hlabel, bdlabel, PETSC_FALSE, idm);CHKERRQ(ierr); 2120720e594eSMatthew G. Knepley if (dmInterface) {*dmInterface = idm;} 2121720e594eSMatthew G. Knepley else {ierr = DMDestroy(&idm);CHKERRQ(ierr);} 21227db7e0a7SMatthew G. Knepley ierr = DMPlexConstructCohesiveCells(dm, hlabel, slabel, dmHybrid);CHKERRQ(ierr); 21233cf72582SMatthew G. Knepley if (hybridLabel) *hybridLabel = hlabel; 212453aa2e23SMatthew G. Knepley else {ierr = DMLabelDestroy(&hlabel);CHKERRQ(ierr);} 21257db7e0a7SMatthew G. Knepley if (splitLabel) *splitLabel = slabel; 2126*4a7ee7d0SMatthew G. Knepley { 2127*4a7ee7d0SMatthew G. Knepley DM cdm; 2128*4a7ee7d0SMatthew G. Knepley DMLabel ctLabel; 2129*4a7ee7d0SMatthew G. Knepley 2130*4a7ee7d0SMatthew G. Knepley /* We need to somehow share the celltype label with the coordinate dm */ 2131*4a7ee7d0SMatthew G. Knepley ierr = DMGetCoordinateDM(*dmHybrid, &cdm);CHKERRQ(ierr); 2132*4a7ee7d0SMatthew G. Knepley ierr = DMPlexGetCellTypeLabel(*dmHybrid, &ctLabel);CHKERRQ(ierr); 2133*4a7ee7d0SMatthew G. Knepley ierr = DMSetLabel(cdm, ctLabel);CHKERRQ(ierr); 2134*4a7ee7d0SMatthew G. Knepley } 2135cd0c2139SMatthew G Knepley PetscFunctionReturn(0); 2136cd0c2139SMatthew G Knepley } 2137cd0c2139SMatthew G Knepley 2138efa14ee0SMatthew G Knepley /* Here we need the explicit assumption that: 2139efa14ee0SMatthew G Knepley 2140efa14ee0SMatthew G Knepley For any marked cell, the marked vertices constitute a single face 2141efa14ee0SMatthew G Knepley */ 2142830e53efSMatthew G. Knepley static PetscErrorCode DMPlexMarkSubmesh_Uninterpolated(DM dm, DMLabel vertexLabel, PetscInt value, DMLabel subpointMap, PetscInt *numFaces, PetscInt *nFV, DM subdm) 2143efa14ee0SMatthew G Knepley { 2144fed694aaSMatthew G. Knepley IS subvertexIS = NULL; 2145efa14ee0SMatthew G Knepley const PetscInt *subvertices; 2146412e9a14SMatthew G. Knepley PetscInt *pStart, *pEnd, pSize; 2147efa14ee0SMatthew G Knepley PetscInt depth, dim, d, numSubVerticesInitial = 0, v; 2148efa14ee0SMatthew G Knepley PetscErrorCode ierr; 2149efa14ee0SMatthew G Knepley 2150efa14ee0SMatthew G Knepley PetscFunctionBegin; 2151efa14ee0SMatthew G Knepley *numFaces = 0; 2152efa14ee0SMatthew G Knepley *nFV = 0; 2153efa14ee0SMatthew G Knepley ierr = DMPlexGetDepth(dm, &depth);CHKERRQ(ierr); 2154c73cfb54SMatthew G. Knepley ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr); 215577d178adSMatthew G. Knepley pSize = PetscMax(depth, dim) + 1; 2156412e9a14SMatthew G. Knepley ierr = PetscMalloc2(pSize, &pStart, pSize, &pEnd);CHKERRQ(ierr); 2157efa14ee0SMatthew G Knepley for (d = 0; d <= depth; ++d) { 2158412e9a14SMatthew G. Knepley ierr = DMPlexGetSimplexOrBoxCells(dm, depth-d, &pStart[d], &pEnd[d]);CHKERRQ(ierr); 2159efa14ee0SMatthew G Knepley } 2160efa14ee0SMatthew G Knepley /* Loop over initial vertices and mark all faces in the collective star() */ 2161fed694aaSMatthew G. Knepley if (vertexLabel) {ierr = DMLabelGetStratumIS(vertexLabel, value, &subvertexIS);CHKERRQ(ierr);} 2162efa14ee0SMatthew G Knepley if (subvertexIS) { 2163efa14ee0SMatthew G Knepley ierr = ISGetSize(subvertexIS, &numSubVerticesInitial);CHKERRQ(ierr); 2164efa14ee0SMatthew G Knepley ierr = ISGetIndices(subvertexIS, &subvertices);CHKERRQ(ierr); 2165efa14ee0SMatthew G Knepley } 2166efa14ee0SMatthew G Knepley for (v = 0; v < numSubVerticesInitial; ++v) { 2167efa14ee0SMatthew G Knepley const PetscInt vertex = subvertices[v]; 21680298fd71SBarry Smith PetscInt *star = NULL; 2169efa14ee0SMatthew G Knepley PetscInt starSize, s, numCells = 0, c; 2170efa14ee0SMatthew G Knepley 2171efa14ee0SMatthew G Knepley ierr = DMPlexGetTransitiveClosure(dm, vertex, PETSC_FALSE, &starSize, &star);CHKERRQ(ierr); 2172efa14ee0SMatthew G Knepley for (s = 0; s < starSize*2; s += 2) { 2173efa14ee0SMatthew G Knepley const PetscInt point = star[s]; 2174efa14ee0SMatthew G Knepley if ((point >= pStart[depth]) && (point < pEnd[depth])) star[numCells++] = point; 2175efa14ee0SMatthew G Knepley } 2176efa14ee0SMatthew G Knepley for (c = 0; c < numCells; ++c) { 2177efa14ee0SMatthew G Knepley const PetscInt cell = star[c]; 21780298fd71SBarry Smith PetscInt *closure = NULL; 2179efa14ee0SMatthew G Knepley PetscInt closureSize, cl; 2180efa14ee0SMatthew G Knepley PetscInt cellLoc, numCorners = 0, faceSize = 0; 2181efa14ee0SMatthew G Knepley 2182efa14ee0SMatthew G Knepley ierr = DMLabelGetValue(subpointMap, cell, &cellLoc);CHKERRQ(ierr); 218365560c7fSMatthew G Knepley if (cellLoc == 2) continue; 218482f516ccSBarry Smith if (cellLoc >= 0) SETERRQ2(PetscObjectComm((PetscObject)dm), PETSC_ERR_PLIB, "Cell %d has dimension %d in the surface label", cell, cellLoc); 2185efa14ee0SMatthew G Knepley ierr = DMPlexGetTransitiveClosure(dm, cell, PETSC_TRUE, &closureSize, &closure);CHKERRQ(ierr); 2186efa14ee0SMatthew G Knepley for (cl = 0; cl < closureSize*2; cl += 2) { 2187efa14ee0SMatthew G Knepley const PetscInt point = closure[cl]; 2188efa14ee0SMatthew G Knepley PetscInt vertexLoc; 2189efa14ee0SMatthew G Knepley 2190efa14ee0SMatthew G Knepley if ((point >= pStart[0]) && (point < pEnd[0])) { 2191efa14ee0SMatthew G Knepley ++numCorners; 2192efa14ee0SMatthew G Knepley ierr = DMLabelGetValue(vertexLabel, point, &vertexLoc);CHKERRQ(ierr); 2193830e53efSMatthew G. Knepley if (vertexLoc == value) closure[faceSize++] = point; 2194efa14ee0SMatthew G Knepley } 2195efa14ee0SMatthew G Knepley } 219618ad9376SMatthew G. Knepley if (!(*nFV)) {ierr = DMPlexGetNumFaceVertices(dm, dim, numCorners, nFV);CHKERRQ(ierr);} 219782f516ccSBarry Smith if (faceSize > *nFV) SETERRQ1(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Invalid submesh: Too many vertices %d of an element on the surface", faceSize); 2198efa14ee0SMatthew G Knepley if (faceSize == *nFV) { 2199007baee2SMatthew G. Knepley const PetscInt *cells = NULL; 2200007baee2SMatthew G. Knepley PetscInt numCells, nc; 2201007baee2SMatthew G. Knepley 2202efa14ee0SMatthew G Knepley ++(*numFaces); 2203efa14ee0SMatthew G Knepley for (cl = 0; cl < faceSize; ++cl) { 2204efa14ee0SMatthew G Knepley ierr = DMLabelSetValue(subpointMap, closure[cl], 0);CHKERRQ(ierr); 2205efa14ee0SMatthew G Knepley } 2206007baee2SMatthew G. Knepley ierr = DMPlexGetJoin(dm, faceSize, closure, &numCells, &cells);CHKERRQ(ierr); 2207007baee2SMatthew G. Knepley for (nc = 0; nc < numCells; ++nc) { 2208007baee2SMatthew G. Knepley ierr = DMLabelSetValue(subpointMap, cells[nc], 2);CHKERRQ(ierr); 2209007baee2SMatthew G. Knepley } 2210007baee2SMatthew G. Knepley ierr = DMPlexRestoreJoin(dm, faceSize, closure, &numCells, &cells);CHKERRQ(ierr); 2211efa14ee0SMatthew G Knepley } 2212efa14ee0SMatthew G Knepley ierr = DMPlexRestoreTransitiveClosure(dm, cell, PETSC_TRUE, &closureSize, &closure);CHKERRQ(ierr); 2213efa14ee0SMatthew G Knepley } 2214efa14ee0SMatthew G Knepley ierr = DMPlexRestoreTransitiveClosure(dm, vertex, PETSC_FALSE, &starSize, &star);CHKERRQ(ierr); 2215efa14ee0SMatthew G Knepley } 2216efa14ee0SMatthew G Knepley if (subvertexIS) { 2217efa14ee0SMatthew G Knepley ierr = ISRestoreIndices(subvertexIS, &subvertices);CHKERRQ(ierr); 2218efa14ee0SMatthew G Knepley } 2219efa14ee0SMatthew G Knepley ierr = ISDestroy(&subvertexIS);CHKERRQ(ierr); 2220412e9a14SMatthew G. Knepley ierr = PetscFree2(pStart, pEnd);CHKERRQ(ierr); 2221efa14ee0SMatthew G Knepley PetscFunctionReturn(0); 2222efa14ee0SMatthew G Knepley } 2223efa14ee0SMatthew G Knepley 2224158acfadSMatthew G. Knepley static PetscErrorCode DMPlexMarkSubmesh_Interpolated(DM dm, DMLabel vertexLabel, PetscInt value, PetscBool markedFaces, DMLabel subpointMap, DM subdm) 2225efa14ee0SMatthew G Knepley { 222634b4c39eSMatthew G. Knepley IS subvertexIS = NULL; 2227efa14ee0SMatthew G Knepley const PetscInt *subvertices; 2228412e9a14SMatthew G. Knepley PetscInt *pStart, *pEnd; 2229efa14ee0SMatthew G Knepley PetscInt dim, d, numSubVerticesInitial = 0, v; 2230efa14ee0SMatthew G Knepley PetscErrorCode ierr; 2231efa14ee0SMatthew G Knepley 2232efa14ee0SMatthew G Knepley PetscFunctionBegin; 2233c73cfb54SMatthew G. Knepley ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr); 2234412e9a14SMatthew G. Knepley ierr = PetscMalloc2(dim+1, &pStart, dim+1, &pEnd);CHKERRQ(ierr); 2235efa14ee0SMatthew G Knepley for (d = 0; d <= dim; ++d) { 2236412e9a14SMatthew G. Knepley ierr = DMPlexGetSimplexOrBoxCells(dm, dim-d, &pStart[d], &pEnd[d]);CHKERRQ(ierr); 2237efa14ee0SMatthew G Knepley } 2238efa14ee0SMatthew G Knepley /* Loop over initial vertices and mark all faces in the collective star() */ 223934b4c39eSMatthew G. Knepley if (vertexLabel) { 2240830e53efSMatthew G. Knepley ierr = DMLabelGetStratumIS(vertexLabel, value, &subvertexIS);CHKERRQ(ierr); 2241efa14ee0SMatthew G Knepley if (subvertexIS) { 2242efa14ee0SMatthew G Knepley ierr = ISGetSize(subvertexIS, &numSubVerticesInitial);CHKERRQ(ierr); 2243efa14ee0SMatthew G Knepley ierr = ISGetIndices(subvertexIS, &subvertices);CHKERRQ(ierr); 2244efa14ee0SMatthew G Knepley } 224534b4c39eSMatthew G. Knepley } 2246efa14ee0SMatthew G Knepley for (v = 0; v < numSubVerticesInitial; ++v) { 2247efa14ee0SMatthew G Knepley const PetscInt vertex = subvertices[v]; 22480298fd71SBarry Smith PetscInt *star = NULL; 2249efa14ee0SMatthew G Knepley PetscInt starSize, s, numFaces = 0, f; 2250efa14ee0SMatthew G Knepley 2251efa14ee0SMatthew G Knepley ierr = DMPlexGetTransitiveClosure(dm, vertex, PETSC_FALSE, &starSize, &star);CHKERRQ(ierr); 2252efa14ee0SMatthew G Knepley for (s = 0; s < starSize*2; s += 2) { 2253efa14ee0SMatthew G Knepley const PetscInt point = star[s]; 2254158acfadSMatthew G. Knepley PetscInt faceLoc; 2255158acfadSMatthew G. Knepley 2256158acfadSMatthew G. Knepley if ((point >= pStart[dim-1]) && (point < pEnd[dim-1])) { 2257158acfadSMatthew G. Knepley if (markedFaces) { 2258158acfadSMatthew G. Knepley ierr = DMLabelGetValue(vertexLabel, point, &faceLoc);CHKERRQ(ierr); 2259158acfadSMatthew G. Knepley if (faceLoc < 0) continue; 2260158acfadSMatthew G. Knepley } 2261158acfadSMatthew G. Knepley star[numFaces++] = point; 2262158acfadSMatthew G. Knepley } 2263efa14ee0SMatthew G Knepley } 2264efa14ee0SMatthew G Knepley for (f = 0; f < numFaces; ++f) { 2265efa14ee0SMatthew G Knepley const PetscInt face = star[f]; 22660298fd71SBarry Smith PetscInt *closure = NULL; 2267efa14ee0SMatthew G Knepley PetscInt closureSize, c; 2268efa14ee0SMatthew G Knepley PetscInt faceLoc; 2269efa14ee0SMatthew G Knepley 2270efa14ee0SMatthew G Knepley ierr = DMLabelGetValue(subpointMap, face, &faceLoc);CHKERRQ(ierr); 2271efa14ee0SMatthew G Knepley if (faceLoc == dim-1) continue; 227282f516ccSBarry Smith if (faceLoc >= 0) SETERRQ2(PetscObjectComm((PetscObject)dm), PETSC_ERR_PLIB, "Face %d has dimension %d in the surface label", face, faceLoc); 2273efa14ee0SMatthew G Knepley ierr = DMPlexGetTransitiveClosure(dm, face, PETSC_TRUE, &closureSize, &closure);CHKERRQ(ierr); 2274efa14ee0SMatthew G Knepley for (c = 0; c < closureSize*2; c += 2) { 2275efa14ee0SMatthew G Knepley const PetscInt point = closure[c]; 2276efa14ee0SMatthew G Knepley PetscInt vertexLoc; 2277efa14ee0SMatthew G Knepley 2278efa14ee0SMatthew G Knepley if ((point >= pStart[0]) && (point < pEnd[0])) { 2279efa14ee0SMatthew G Knepley ierr = DMLabelGetValue(vertexLabel, point, &vertexLoc);CHKERRQ(ierr); 2280830e53efSMatthew G. Knepley if (vertexLoc != value) break; 2281efa14ee0SMatthew G Knepley } 2282efa14ee0SMatthew G Knepley } 2283efa14ee0SMatthew G Knepley if (c == closureSize*2) { 2284efa14ee0SMatthew G Knepley const PetscInt *support; 2285efa14ee0SMatthew G Knepley PetscInt supportSize, s; 2286efa14ee0SMatthew G Knepley 2287efa14ee0SMatthew G Knepley for (c = 0; c < closureSize*2; c += 2) { 2288efa14ee0SMatthew G Knepley const PetscInt point = closure[c]; 2289efa14ee0SMatthew G Knepley 2290efa14ee0SMatthew G Knepley for (d = 0; d < dim; ++d) { 2291efa14ee0SMatthew G Knepley if ((point >= pStart[d]) && (point < pEnd[d])) { 2292efa14ee0SMatthew G Knepley ierr = DMLabelSetValue(subpointMap, point, d);CHKERRQ(ierr); 2293efa14ee0SMatthew G Knepley break; 2294efa14ee0SMatthew G Knepley } 2295efa14ee0SMatthew G Knepley } 2296efa14ee0SMatthew G Knepley } 2297efa14ee0SMatthew G Knepley ierr = DMPlexGetSupportSize(dm, face, &supportSize);CHKERRQ(ierr); 2298efa14ee0SMatthew G Knepley ierr = DMPlexGetSupport(dm, face, &support);CHKERRQ(ierr); 2299efa14ee0SMatthew G Knepley for (s = 0; s < supportSize; ++s) { 2300efa14ee0SMatthew G Knepley ierr = DMLabelSetValue(subpointMap, support[s], dim);CHKERRQ(ierr); 2301efa14ee0SMatthew G Knepley } 2302efa14ee0SMatthew G Knepley } 2303efa14ee0SMatthew G Knepley ierr = DMPlexRestoreTransitiveClosure(dm, face, PETSC_TRUE, &closureSize, &closure);CHKERRQ(ierr); 2304efa14ee0SMatthew G Knepley } 2305efa14ee0SMatthew G Knepley ierr = DMPlexRestoreTransitiveClosure(dm, vertex, PETSC_FALSE, &starSize, &star);CHKERRQ(ierr); 2306efa14ee0SMatthew G Knepley } 230734b4c39eSMatthew G. Knepley if (subvertexIS) {ierr = ISRestoreIndices(subvertexIS, &subvertices);CHKERRQ(ierr);} 2308efa14ee0SMatthew G Knepley ierr = ISDestroy(&subvertexIS);CHKERRQ(ierr); 2309412e9a14SMatthew G. Knepley ierr = PetscFree2(pStart, pEnd);CHKERRQ(ierr); 2310efa14ee0SMatthew G Knepley PetscFunctionReturn(0); 2311efa14ee0SMatthew G Knepley } 2312efa14ee0SMatthew G Knepley 231327c04023SMatthew G. Knepley static PetscErrorCode DMPlexMarkCohesiveSubmesh_Uninterpolated(DM dm, PetscBool hasLagrange, const char labelname[], PetscInt value, DMLabel subpointMap, PetscInt *numFaces, PetscInt *nFV, PetscInt *subCells[], DM subdm) 2314766ab985SMatthew G. Knepley { 231527c04023SMatthew G. Knepley DMLabel label = NULL; 2316766ab985SMatthew G. Knepley const PetscInt *cone; 23179fc93327SToby Isaac PetscInt dim, cMax, cEnd, c, subc = 0, p, coneSize = -1; 2318766ab985SMatthew G. Knepley PetscErrorCode ierr; 2319766ab985SMatthew G. Knepley 2320812bfc34SJed Brown PetscFunctionBegin; 2321c0ed958bSJed Brown *numFaces = 0; 2322c0ed958bSJed Brown *nFV = 0; 2323c58f1c22SToby Isaac if (labelname) {ierr = DMGetLabel(dm, labelname, &label);CHKERRQ(ierr);} 2324fed694aaSMatthew G. Knepley *subCells = NULL; 2325c73cfb54SMatthew G. Knepley ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr); 2326412e9a14SMatthew G. Knepley ierr = DMPlexGetTensorPrismBounds_Internal(dm, dim, &cMax, &cEnd);CHKERRQ(ierr); 2327766ab985SMatthew G. Knepley if (cMax < 0) PetscFunctionReturn(0); 232827c04023SMatthew G. Knepley if (label) { 232927c04023SMatthew G. Knepley for (c = cMax; c < cEnd; ++c) { 233027c04023SMatthew G. Knepley PetscInt val; 233127c04023SMatthew G. Knepley 233227c04023SMatthew G. Knepley ierr = DMLabelGetValue(label, c, &val);CHKERRQ(ierr); 233327c04023SMatthew G. Knepley if (val == value) { 233427c04023SMatthew G. Knepley ++(*numFaces); 233527c04023SMatthew G. Knepley ierr = DMPlexGetConeSize(dm, c, &coneSize);CHKERRQ(ierr); 233627c04023SMatthew G. Knepley } 233727c04023SMatthew G. Knepley } 233827c04023SMatthew G. Knepley } else { 2339766ab985SMatthew G. Knepley *numFaces = cEnd - cMax; 234027c04023SMatthew G. Knepley ierr = DMPlexGetConeSize(dm, cMax, &coneSize);CHKERRQ(ierr); 234127c04023SMatthew G. Knepley } 2342785e854fSJed Brown ierr = PetscMalloc1(*numFaces *2, subCells);CHKERRQ(ierr); 23439fc93327SToby Isaac if (!(*numFaces)) PetscFunctionReturn(0); 23449fc93327SToby Isaac *nFV = hasLagrange ? coneSize/3 : coneSize/2; 2345766ab985SMatthew G. Knepley for (c = cMax; c < cEnd; ++c) { 2346766ab985SMatthew G. Knepley const PetscInt *cells; 2347766ab985SMatthew G. Knepley PetscInt numCells; 2348766ab985SMatthew G. Knepley 234927c04023SMatthew G. Knepley if (label) { 235027c04023SMatthew G. Knepley PetscInt val; 235127c04023SMatthew G. Knepley 235227c04023SMatthew G. Knepley ierr = DMLabelGetValue(label, c, &val);CHKERRQ(ierr); 235327c04023SMatthew G. Knepley if (val != value) continue; 235427c04023SMatthew G. Knepley } 2355766ab985SMatthew G. Knepley ierr = DMPlexGetCone(dm, c, &cone);CHKERRQ(ierr); 2356766ab985SMatthew G. Knepley for (p = 0; p < *nFV; ++p) { 2357766ab985SMatthew G. Knepley ierr = DMLabelSetValue(subpointMap, cone[p], 0);CHKERRQ(ierr); 2358766ab985SMatthew G. Knepley } 2359766ab985SMatthew G. Knepley /* Negative face */ 2360766ab985SMatthew G. Knepley ierr = DMPlexGetJoin(dm, *nFV, cone, &numCells, &cells);CHKERRQ(ierr); 236127234c99SMatthew G. Knepley /* Not true in parallel 236227234c99SMatthew G. Knepley if (numCells != 2) SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Cohesive cells should separate two cells"); */ 2363766ab985SMatthew G. Knepley for (p = 0; p < numCells; ++p) { 2364766ab985SMatthew G. Knepley ierr = DMLabelSetValue(subpointMap, cells[p], 2);CHKERRQ(ierr); 236527234c99SMatthew G. Knepley (*subCells)[subc++] = cells[p]; 2366766ab985SMatthew G. Knepley } 2367766ab985SMatthew G. Knepley ierr = DMPlexRestoreJoin(dm, *nFV, cone, &numCells, &cells);CHKERRQ(ierr); 2368766ab985SMatthew G. Knepley /* Positive face is not included */ 2369766ab985SMatthew G. Knepley } 2370766ab985SMatthew G. Knepley PetscFunctionReturn(0); 2371766ab985SMatthew G. Knepley } 2372766ab985SMatthew G. Knepley 23733982b651SMatthew G. Knepley static PetscErrorCode DMPlexMarkCohesiveSubmesh_Interpolated(DM dm, DMLabel label, PetscInt value, DMLabel subpointMap, DM subdm) 2374766ab985SMatthew G. Knepley { 2375766ab985SMatthew G. Knepley PetscInt *pStart, *pEnd; 2376766ab985SMatthew G. Knepley PetscInt dim, cMax, cEnd, c, d; 2377766ab985SMatthew G. Knepley PetscErrorCode ierr; 2378766ab985SMatthew G. Knepley 2379812bfc34SJed Brown PetscFunctionBegin; 2380c73cfb54SMatthew G. Knepley ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr); 2381412e9a14SMatthew G. Knepley ierr = DMPlexGetTensorPrismBounds_Internal(dm, dim, &cMax, &cEnd);CHKERRQ(ierr); 2382766ab985SMatthew G. Knepley if (cMax < 0) PetscFunctionReturn(0); 2383dcca6d9dSJed Brown ierr = PetscMalloc2(dim+1,&pStart,dim+1,&pEnd);CHKERRQ(ierr); 2384b3154360SMatthew G. Knepley for (d = 0; d <= dim; ++d) {ierr = DMPlexGetDepthStratum(dm, d, &pStart[d], &pEnd[d]);CHKERRQ(ierr);} 2385766ab985SMatthew G. Knepley for (c = cMax; c < cEnd; ++c) { 2386766ab985SMatthew G. Knepley const PetscInt *cone; 2387766ab985SMatthew G. Knepley PetscInt *closure = NULL; 2388b3154360SMatthew G. Knepley PetscInt fconeSize, coneSize, closureSize, cl, val; 2389766ab985SMatthew G. Knepley 239027c04023SMatthew G. Knepley if (label) { 239127c04023SMatthew G. Knepley ierr = DMLabelGetValue(label, c, &val);CHKERRQ(ierr); 239227c04023SMatthew G. Knepley if (val != value) continue; 239327c04023SMatthew G. Knepley } 2394766ab985SMatthew G. Knepley ierr = DMPlexGetConeSize(dm, c, &coneSize);CHKERRQ(ierr); 2395766ab985SMatthew G. Knepley ierr = DMPlexGetCone(dm, c, &cone);CHKERRQ(ierr); 2396b3154360SMatthew G. Knepley ierr = DMPlexGetConeSize(dm, cone[0], &fconeSize);CHKERRQ(ierr); 2397b3154360SMatthew G. Knepley if (coneSize != (fconeSize ? fconeSize : 1) + 2) SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Cohesive cells should separate two cells"); 2398b3154360SMatthew G. Knepley /* Negative face */ 2399766ab985SMatthew G. Knepley ierr = DMPlexGetTransitiveClosure(dm, cone[0], PETSC_TRUE, &closureSize, &closure);CHKERRQ(ierr); 2400766ab985SMatthew G. Knepley for (cl = 0; cl < closureSize*2; cl += 2) { 2401766ab985SMatthew G. Knepley const PetscInt point = closure[cl]; 2402766ab985SMatthew G. Knepley 2403766ab985SMatthew G. Knepley for (d = 0; d <= dim; ++d) { 2404766ab985SMatthew G. Knepley if ((point >= pStart[d]) && (point < pEnd[d])) { 2405766ab985SMatthew G. Knepley ierr = DMLabelSetValue(subpointMap, point, d);CHKERRQ(ierr); 2406766ab985SMatthew G. Knepley break; 2407766ab985SMatthew G. Knepley } 2408766ab985SMatthew G. Knepley } 2409766ab985SMatthew G. Knepley } 2410766ab985SMatthew G. Knepley ierr = DMPlexRestoreTransitiveClosure(dm, cone[0], PETSC_TRUE, &closureSize, &closure);CHKERRQ(ierr); 2411766ab985SMatthew G. Knepley /* Cells -- positive face is not included */ 2412766ab985SMatthew G. Knepley for (cl = 0; cl < 1; ++cl) { 2413766ab985SMatthew G. Knepley const PetscInt *support; 2414766ab985SMatthew G. Knepley PetscInt supportSize, s; 2415766ab985SMatthew G. Knepley 2416766ab985SMatthew G. Knepley ierr = DMPlexGetSupportSize(dm, cone[cl], &supportSize);CHKERRQ(ierr); 2417711de394SMatthew G. Knepley /* if (supportSize != 2) SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Cohesive faces should separate two cells"); */ 2418766ab985SMatthew G. Knepley ierr = DMPlexGetSupport(dm, cone[cl], &support);CHKERRQ(ierr); 2419766ab985SMatthew G. Knepley for (s = 0; s < supportSize; ++s) { 2420766ab985SMatthew G. Knepley ierr = DMLabelSetValue(subpointMap, support[s], dim);CHKERRQ(ierr); 2421766ab985SMatthew G. Knepley } 2422766ab985SMatthew G. Knepley } 2423766ab985SMatthew G. Knepley } 2424766ab985SMatthew G. Knepley ierr = PetscFree2(pStart, pEnd);CHKERRQ(ierr); 2425766ab985SMatthew G. Knepley PetscFunctionReturn(0); 2426766ab985SMatthew G. Knepley } 2427766ab985SMatthew G. Knepley 2428c08575a3SMatthew G. Knepley static PetscErrorCode DMPlexGetFaceOrientation(DM dm, PetscInt cell, PetscInt numCorners, PetscInt indices[], PetscInt oppositeVertex, PetscInt origVertices[], PetscInt faceVertices[], PetscBool *posOriented) 2429e6ccafaeSMatthew G Knepley { 243082f516ccSBarry Smith MPI_Comm comm; 2431e6ccafaeSMatthew G Knepley PetscBool posOrient = PETSC_FALSE; 2432e6ccafaeSMatthew G Knepley const PetscInt debug = 0; 2433e6ccafaeSMatthew G Knepley PetscInt cellDim, faceSize, f; 2434e6ccafaeSMatthew G Knepley PetscErrorCode ierr; 2435e6ccafaeSMatthew G Knepley 243682f516ccSBarry Smith PetscFunctionBegin; 243782f516ccSBarry Smith ierr = PetscObjectGetComm((PetscObject)dm,&comm);CHKERRQ(ierr); 2438c73cfb54SMatthew G. Knepley ierr = DMGetDimension(dm, &cellDim);CHKERRQ(ierr); 2439367003a6SStefano Zampini if (debug) {ierr = PetscPrintf(comm, "cellDim: %d numCorners: %d\n", cellDim, numCorners);CHKERRQ(ierr);} 2440e6ccafaeSMatthew G Knepley 2441ddeab2a6SMatthew G. Knepley if (cellDim == 1 && numCorners == 2) { 2442ddeab2a6SMatthew G. Knepley /* Triangle */ 2443e6ccafaeSMatthew G Knepley faceSize = numCorners-1; 2444e6ccafaeSMatthew G Knepley posOrient = !(oppositeVertex%2) ? PETSC_TRUE : PETSC_FALSE; 2445ddeab2a6SMatthew G. Knepley } else if (cellDim == 2 && numCorners == 3) { 2446ddeab2a6SMatthew G. Knepley /* Triangle */ 2447ddeab2a6SMatthew G. Knepley faceSize = numCorners-1; 2448ddeab2a6SMatthew G. Knepley posOrient = !(oppositeVertex%2) ? PETSC_TRUE : PETSC_FALSE; 2449ddeab2a6SMatthew G. Knepley } else if (cellDim == 3 && numCorners == 4) { 2450ddeab2a6SMatthew G. Knepley /* Tetrahedron */ 2451ddeab2a6SMatthew G. Knepley faceSize = numCorners-1; 2452ddeab2a6SMatthew G. Knepley posOrient = (oppositeVertex%2) ? PETSC_TRUE : PETSC_FALSE; 2453e6ccafaeSMatthew G Knepley } else if (cellDim == 1 && numCorners == 3) { 2454e6ccafaeSMatthew G Knepley /* Quadratic line */ 2455e6ccafaeSMatthew G Knepley faceSize = 1; 2456e6ccafaeSMatthew G Knepley posOrient = PETSC_TRUE; 2457e6ccafaeSMatthew G Knepley } else if (cellDim == 2 && numCorners == 4) { 2458e6ccafaeSMatthew G Knepley /* Quads */ 2459e6ccafaeSMatthew G Knepley faceSize = 2; 2460e6ccafaeSMatthew G Knepley if ((indices[1] > indices[0]) && (indices[1] - indices[0] == 1)) { 2461e6ccafaeSMatthew G Knepley posOrient = PETSC_TRUE; 2462e6ccafaeSMatthew G Knepley } else if ((indices[0] == 3) && (indices[1] == 0)) { 2463e6ccafaeSMatthew G Knepley posOrient = PETSC_TRUE; 2464e6ccafaeSMatthew G Knepley } else { 2465e6ccafaeSMatthew G Knepley if (((indices[0] > indices[1]) && (indices[0] - indices[1] == 1)) || ((indices[0] == 0) && (indices[1] == 3))) { 2466e6ccafaeSMatthew G Knepley posOrient = PETSC_FALSE; 2467e6ccafaeSMatthew G Knepley } else SETERRQ(comm, PETSC_ERR_ARG_WRONG, "Invalid quad crossedge"); 2468e6ccafaeSMatthew G Knepley } 2469e6ccafaeSMatthew G Knepley } else if (cellDim == 2 && numCorners == 6) { 2470e6ccafaeSMatthew G Knepley /* Quadratic triangle (I hate this) */ 2471e6ccafaeSMatthew G Knepley /* Edges are determined by the first 2 vertices (corners of edges) */ 2472e6ccafaeSMatthew G Knepley const PetscInt faceSizeTri = 3; 2473e6ccafaeSMatthew G Knepley PetscInt sortedIndices[3], i, iFace; 2474e6ccafaeSMatthew G Knepley PetscBool found = PETSC_FALSE; 2475e6ccafaeSMatthew G Knepley PetscInt faceVerticesTriSorted[9] = { 2476e6ccafaeSMatthew G Knepley 0, 3, 4, /* bottom */ 2477e6ccafaeSMatthew G Knepley 1, 4, 5, /* right */ 2478e6ccafaeSMatthew G Knepley 2, 3, 5, /* left */ 2479e6ccafaeSMatthew G Knepley }; 2480e6ccafaeSMatthew G Knepley PetscInt faceVerticesTri[9] = { 2481e6ccafaeSMatthew G Knepley 0, 3, 4, /* bottom */ 2482e6ccafaeSMatthew G Knepley 1, 4, 5, /* right */ 2483e6ccafaeSMatthew G Knepley 2, 5, 3, /* left */ 2484e6ccafaeSMatthew G Knepley }; 2485e6ccafaeSMatthew G Knepley 2486e6ccafaeSMatthew G Knepley for (i = 0; i < faceSizeTri; ++i) sortedIndices[i] = indices[i]; 2487e6ccafaeSMatthew G Knepley ierr = PetscSortInt(faceSizeTri, sortedIndices);CHKERRQ(ierr); 2488e6ccafaeSMatthew G Knepley for (iFace = 0; iFace < 3; ++iFace) { 2489e6ccafaeSMatthew G Knepley const PetscInt ii = iFace*faceSizeTri; 2490e6ccafaeSMatthew G Knepley PetscInt fVertex, cVertex; 2491e6ccafaeSMatthew G Knepley 2492e6ccafaeSMatthew G Knepley if ((sortedIndices[0] == faceVerticesTriSorted[ii+0]) && 2493e6ccafaeSMatthew G Knepley (sortedIndices[1] == faceVerticesTriSorted[ii+1])) { 2494e6ccafaeSMatthew G Knepley for (fVertex = 0; fVertex < faceSizeTri; ++fVertex) { 2495e6ccafaeSMatthew G Knepley for (cVertex = 0; cVertex < faceSizeTri; ++cVertex) { 2496e6ccafaeSMatthew G Knepley if (indices[cVertex] == faceVerticesTri[ii+fVertex]) { 2497e6ccafaeSMatthew G Knepley faceVertices[fVertex] = origVertices[cVertex]; 2498e6ccafaeSMatthew G Knepley break; 2499e6ccafaeSMatthew G Knepley } 2500e6ccafaeSMatthew G Knepley } 2501e6ccafaeSMatthew G Knepley } 2502e6ccafaeSMatthew G Knepley found = PETSC_TRUE; 2503e6ccafaeSMatthew G Knepley break; 2504e6ccafaeSMatthew G Knepley } 2505e6ccafaeSMatthew G Knepley } 2506e6ccafaeSMatthew G Knepley if (!found) SETERRQ(comm, PETSC_ERR_ARG_WRONG, "Invalid tri crossface"); 2507e6ccafaeSMatthew G Knepley if (posOriented) *posOriented = PETSC_TRUE; 2508e6ccafaeSMatthew G Knepley PetscFunctionReturn(0); 2509e6ccafaeSMatthew G Knepley } else if (cellDim == 2 && numCorners == 9) { 2510e6ccafaeSMatthew G Knepley /* Quadratic quad (I hate this) */ 2511e6ccafaeSMatthew G Knepley /* Edges are determined by the first 2 vertices (corners of edges) */ 2512e6ccafaeSMatthew G Knepley const PetscInt faceSizeQuad = 3; 2513e6ccafaeSMatthew G Knepley PetscInt sortedIndices[3], i, iFace; 2514e6ccafaeSMatthew G Knepley PetscBool found = PETSC_FALSE; 2515e6ccafaeSMatthew G Knepley PetscInt faceVerticesQuadSorted[12] = { 2516e6ccafaeSMatthew G Knepley 0, 1, 4, /* bottom */ 2517e6ccafaeSMatthew G Knepley 1, 2, 5, /* right */ 2518e6ccafaeSMatthew G Knepley 2, 3, 6, /* top */ 2519e6ccafaeSMatthew G Knepley 0, 3, 7, /* left */ 2520e6ccafaeSMatthew G Knepley }; 2521e6ccafaeSMatthew G Knepley PetscInt faceVerticesQuad[12] = { 2522e6ccafaeSMatthew G Knepley 0, 1, 4, /* bottom */ 2523e6ccafaeSMatthew G Knepley 1, 2, 5, /* right */ 2524e6ccafaeSMatthew G Knepley 2, 3, 6, /* top */ 2525e6ccafaeSMatthew G Knepley 3, 0, 7, /* left */ 2526e6ccafaeSMatthew G Knepley }; 2527e6ccafaeSMatthew G Knepley 2528e6ccafaeSMatthew G Knepley for (i = 0; i < faceSizeQuad; ++i) sortedIndices[i] = indices[i]; 2529e6ccafaeSMatthew G Knepley ierr = PetscSortInt(faceSizeQuad, sortedIndices);CHKERRQ(ierr); 2530e6ccafaeSMatthew G Knepley for (iFace = 0; iFace < 4; ++iFace) { 2531e6ccafaeSMatthew G Knepley const PetscInt ii = iFace*faceSizeQuad; 2532e6ccafaeSMatthew G Knepley PetscInt fVertex, cVertex; 2533e6ccafaeSMatthew G Knepley 2534e6ccafaeSMatthew G Knepley if ((sortedIndices[0] == faceVerticesQuadSorted[ii+0]) && 2535e6ccafaeSMatthew G Knepley (sortedIndices[1] == faceVerticesQuadSorted[ii+1])) { 2536e6ccafaeSMatthew G Knepley for (fVertex = 0; fVertex < faceSizeQuad; ++fVertex) { 2537e6ccafaeSMatthew G Knepley for (cVertex = 0; cVertex < faceSizeQuad; ++cVertex) { 2538e6ccafaeSMatthew G Knepley if (indices[cVertex] == faceVerticesQuad[ii+fVertex]) { 2539e6ccafaeSMatthew G Knepley faceVertices[fVertex] = origVertices[cVertex]; 2540e6ccafaeSMatthew G Knepley break; 2541e6ccafaeSMatthew G Knepley } 2542e6ccafaeSMatthew G Knepley } 2543e6ccafaeSMatthew G Knepley } 2544e6ccafaeSMatthew G Knepley found = PETSC_TRUE; 2545e6ccafaeSMatthew G Knepley break; 2546e6ccafaeSMatthew G Knepley } 2547e6ccafaeSMatthew G Knepley } 2548e6ccafaeSMatthew G Knepley if (!found) SETERRQ(comm, PETSC_ERR_ARG_WRONG, "Invalid quad crossface"); 2549e6ccafaeSMatthew G Knepley if (posOriented) *posOriented = PETSC_TRUE; 2550e6ccafaeSMatthew G Knepley PetscFunctionReturn(0); 2551e6ccafaeSMatthew G Knepley } else if (cellDim == 3 && numCorners == 8) { 2552e6ccafaeSMatthew G Knepley /* Hexes 2553e6ccafaeSMatthew G Knepley A hex is two oriented quads with the normal of the first 2554e6ccafaeSMatthew G Knepley pointing up at the second. 2555e6ccafaeSMatthew G Knepley 2556e6ccafaeSMatthew G Knepley 7---6 2557e6ccafaeSMatthew G Knepley /| /| 2558e6ccafaeSMatthew G Knepley 4---5 | 2559ddeab2a6SMatthew G. Knepley | 1-|-2 2560e6ccafaeSMatthew G Knepley |/ |/ 2561ddeab2a6SMatthew G. Knepley 0---3 2562e6ccafaeSMatthew G Knepley 2563e6ccafaeSMatthew G Knepley Faces are determined by the first 4 vertices (corners of faces) */ 2564e6ccafaeSMatthew G Knepley const PetscInt faceSizeHex = 4; 2565e6ccafaeSMatthew G Knepley PetscInt sortedIndices[4], i, iFace; 2566e6ccafaeSMatthew G Knepley PetscBool found = PETSC_FALSE; 2567e6ccafaeSMatthew G Knepley PetscInt faceVerticesHexSorted[24] = { 2568e6ccafaeSMatthew G Knepley 0, 1, 2, 3, /* bottom */ 2569e6ccafaeSMatthew G Knepley 4, 5, 6, 7, /* top */ 2570ddeab2a6SMatthew G. Knepley 0, 3, 4, 5, /* front */ 2571ddeab2a6SMatthew G. Knepley 2, 3, 5, 6, /* right */ 2572ddeab2a6SMatthew G. Knepley 1, 2, 6, 7, /* back */ 2573ddeab2a6SMatthew G. Knepley 0, 1, 4, 7, /* left */ 2574e6ccafaeSMatthew G Knepley }; 2575e6ccafaeSMatthew G Knepley PetscInt faceVerticesHex[24] = { 2576ddeab2a6SMatthew G. Knepley 1, 2, 3, 0, /* bottom */ 2577e6ccafaeSMatthew G Knepley 4, 5, 6, 7, /* top */ 2578ddeab2a6SMatthew G. Knepley 0, 3, 5, 4, /* front */ 2579ddeab2a6SMatthew G. Knepley 3, 2, 6, 5, /* right */ 2580ddeab2a6SMatthew G. Knepley 2, 1, 7, 6, /* back */ 2581ddeab2a6SMatthew G. Knepley 1, 0, 4, 7, /* left */ 2582e6ccafaeSMatthew G Knepley }; 2583e6ccafaeSMatthew G Knepley 2584e6ccafaeSMatthew G Knepley for (i = 0; i < faceSizeHex; ++i) sortedIndices[i] = indices[i]; 2585e6ccafaeSMatthew G Knepley ierr = PetscSortInt(faceSizeHex, sortedIndices);CHKERRQ(ierr); 2586e6ccafaeSMatthew G Knepley for (iFace = 0; iFace < 6; ++iFace) { 2587e6ccafaeSMatthew G Knepley const PetscInt ii = iFace*faceSizeHex; 2588e6ccafaeSMatthew G Knepley PetscInt fVertex, cVertex; 2589e6ccafaeSMatthew G Knepley 2590e6ccafaeSMatthew G Knepley if ((sortedIndices[0] == faceVerticesHexSorted[ii+0]) && 2591e6ccafaeSMatthew G Knepley (sortedIndices[1] == faceVerticesHexSorted[ii+1]) && 2592e6ccafaeSMatthew G Knepley (sortedIndices[2] == faceVerticesHexSorted[ii+2]) && 2593e6ccafaeSMatthew G Knepley (sortedIndices[3] == faceVerticesHexSorted[ii+3])) { 2594e6ccafaeSMatthew G Knepley for (fVertex = 0; fVertex < faceSizeHex; ++fVertex) { 2595e6ccafaeSMatthew G Knepley for (cVertex = 0; cVertex < faceSizeHex; ++cVertex) { 2596e6ccafaeSMatthew G Knepley if (indices[cVertex] == faceVerticesHex[ii+fVertex]) { 2597e6ccafaeSMatthew G Knepley faceVertices[fVertex] = origVertices[cVertex]; 2598e6ccafaeSMatthew G Knepley break; 2599e6ccafaeSMatthew G Knepley } 2600e6ccafaeSMatthew G Knepley } 2601e6ccafaeSMatthew G Knepley } 2602e6ccafaeSMatthew G Knepley found = PETSC_TRUE; 2603e6ccafaeSMatthew G Knepley break; 2604e6ccafaeSMatthew G Knepley } 2605e6ccafaeSMatthew G Knepley } 2606e6ccafaeSMatthew G Knepley if (!found) SETERRQ(comm, PETSC_ERR_ARG_WRONG, "Invalid hex crossface"); 2607e6ccafaeSMatthew G Knepley if (posOriented) *posOriented = PETSC_TRUE; 2608e6ccafaeSMatthew G Knepley PetscFunctionReturn(0); 2609e6ccafaeSMatthew G Knepley } else if (cellDim == 3 && numCorners == 10) { 2610e6ccafaeSMatthew G Knepley /* Quadratic tet */ 2611e6ccafaeSMatthew G Knepley /* Faces are determined by the first 3 vertices (corners of faces) */ 2612e6ccafaeSMatthew G Knepley const PetscInt faceSizeTet = 6; 2613e6ccafaeSMatthew G Knepley PetscInt sortedIndices[6], i, iFace; 2614e6ccafaeSMatthew G Knepley PetscBool found = PETSC_FALSE; 2615e6ccafaeSMatthew G Knepley PetscInt faceVerticesTetSorted[24] = { 2616e6ccafaeSMatthew G Knepley 0, 1, 2, 6, 7, 8, /* bottom */ 2617e6ccafaeSMatthew G Knepley 0, 3, 4, 6, 7, 9, /* front */ 2618e6ccafaeSMatthew G Knepley 1, 4, 5, 7, 8, 9, /* right */ 2619e6ccafaeSMatthew G Knepley 2, 3, 5, 6, 8, 9, /* left */ 2620e6ccafaeSMatthew G Knepley }; 2621e6ccafaeSMatthew G Knepley PetscInt faceVerticesTet[24] = { 2622e6ccafaeSMatthew G Knepley 0, 1, 2, 6, 7, 8, /* bottom */ 2623e6ccafaeSMatthew G Knepley 0, 4, 3, 6, 7, 9, /* front */ 2624e6ccafaeSMatthew G Knepley 1, 5, 4, 7, 8, 9, /* right */ 2625e6ccafaeSMatthew G Knepley 2, 3, 5, 8, 6, 9, /* left */ 2626e6ccafaeSMatthew G Knepley }; 2627e6ccafaeSMatthew G Knepley 2628e6ccafaeSMatthew G Knepley for (i = 0; i < faceSizeTet; ++i) sortedIndices[i] = indices[i]; 2629e6ccafaeSMatthew G Knepley ierr = PetscSortInt(faceSizeTet, sortedIndices);CHKERRQ(ierr); 2630e6ccafaeSMatthew G Knepley for (iFace=0; iFace < 4; ++iFace) { 2631e6ccafaeSMatthew G Knepley const PetscInt ii = iFace*faceSizeTet; 2632e6ccafaeSMatthew G Knepley PetscInt fVertex, cVertex; 2633e6ccafaeSMatthew G Knepley 2634e6ccafaeSMatthew G Knepley if ((sortedIndices[0] == faceVerticesTetSorted[ii+0]) && 2635e6ccafaeSMatthew G Knepley (sortedIndices[1] == faceVerticesTetSorted[ii+1]) && 2636e6ccafaeSMatthew G Knepley (sortedIndices[2] == faceVerticesTetSorted[ii+2]) && 2637e6ccafaeSMatthew G Knepley (sortedIndices[3] == faceVerticesTetSorted[ii+3])) { 2638e6ccafaeSMatthew G Knepley for (fVertex = 0; fVertex < faceSizeTet; ++fVertex) { 2639e6ccafaeSMatthew G Knepley for (cVertex = 0; cVertex < faceSizeTet; ++cVertex) { 2640e6ccafaeSMatthew G Knepley if (indices[cVertex] == faceVerticesTet[ii+fVertex]) { 2641e6ccafaeSMatthew G Knepley faceVertices[fVertex] = origVertices[cVertex]; 2642e6ccafaeSMatthew G Knepley break; 2643e6ccafaeSMatthew G Knepley } 2644e6ccafaeSMatthew G Knepley } 2645e6ccafaeSMatthew G Knepley } 2646e6ccafaeSMatthew G Knepley found = PETSC_TRUE; 2647e6ccafaeSMatthew G Knepley break; 2648e6ccafaeSMatthew G Knepley } 2649e6ccafaeSMatthew G Knepley } 2650e6ccafaeSMatthew G Knepley if (!found) SETERRQ(comm, PETSC_ERR_ARG_WRONG, "Invalid tet crossface"); 2651e6ccafaeSMatthew G Knepley if (posOriented) *posOriented = PETSC_TRUE; 2652e6ccafaeSMatthew G Knepley PetscFunctionReturn(0); 2653e6ccafaeSMatthew G Knepley } else if (cellDim == 3 && numCorners == 27) { 2654e6ccafaeSMatthew G Knepley /* Quadratic hexes (I hate this) 2655e6ccafaeSMatthew G Knepley A hex is two oriented quads with the normal of the first 2656e6ccafaeSMatthew G Knepley pointing up at the second. 2657e6ccafaeSMatthew G Knepley 2658e6ccafaeSMatthew G Knepley 7---6 2659e6ccafaeSMatthew G Knepley /| /| 2660e6ccafaeSMatthew G Knepley 4---5 | 2661e6ccafaeSMatthew G Knepley | 3-|-2 2662e6ccafaeSMatthew G Knepley |/ |/ 2663e6ccafaeSMatthew G Knepley 0---1 2664e6ccafaeSMatthew G Knepley 2665e6ccafaeSMatthew G Knepley Faces are determined by the first 4 vertices (corners of faces) */ 2666e6ccafaeSMatthew G Knepley const PetscInt faceSizeQuadHex = 9; 2667e6ccafaeSMatthew G Knepley PetscInt sortedIndices[9], i, iFace; 2668e6ccafaeSMatthew G Knepley PetscBool found = PETSC_FALSE; 2669e6ccafaeSMatthew G Knepley PetscInt faceVerticesQuadHexSorted[54] = { 2670e6ccafaeSMatthew G Knepley 0, 1, 2, 3, 8, 9, 10, 11, 24, /* bottom */ 2671e6ccafaeSMatthew G Knepley 4, 5, 6, 7, 12, 13, 14, 15, 25, /* top */ 2672e6ccafaeSMatthew G Knepley 0, 1, 4, 5, 8, 12, 16, 17, 22, /* front */ 2673e6ccafaeSMatthew G Knepley 1, 2, 5, 6, 9, 13, 17, 18, 21, /* right */ 2674e6ccafaeSMatthew G Knepley 2, 3, 6, 7, 10, 14, 18, 19, 23, /* back */ 2675e6ccafaeSMatthew G Knepley 0, 3, 4, 7, 11, 15, 16, 19, 20, /* left */ 2676e6ccafaeSMatthew G Knepley }; 2677e6ccafaeSMatthew G Knepley PetscInt faceVerticesQuadHex[54] = { 2678e6ccafaeSMatthew G Knepley 3, 2, 1, 0, 10, 9, 8, 11, 24, /* bottom */ 2679e6ccafaeSMatthew G Knepley 4, 5, 6, 7, 12, 13, 14, 15, 25, /* top */ 2680e6ccafaeSMatthew G Knepley 0, 1, 5, 4, 8, 17, 12, 16, 22, /* front */ 2681e6ccafaeSMatthew G Knepley 1, 2, 6, 5, 9, 18, 13, 17, 21, /* right */ 2682e6ccafaeSMatthew G Knepley 2, 3, 7, 6, 10, 19, 14, 18, 23, /* back */ 2683e6ccafaeSMatthew G Knepley 3, 0, 4, 7, 11, 16, 15, 19, 20 /* left */ 2684e6ccafaeSMatthew G Knepley }; 2685e6ccafaeSMatthew G Knepley 2686e6ccafaeSMatthew G Knepley for (i = 0; i < faceSizeQuadHex; ++i) sortedIndices[i] = indices[i]; 2687e6ccafaeSMatthew G Knepley ierr = PetscSortInt(faceSizeQuadHex, sortedIndices);CHKERRQ(ierr); 2688e6ccafaeSMatthew G Knepley for (iFace = 0; iFace < 6; ++iFace) { 2689e6ccafaeSMatthew G Knepley const PetscInt ii = iFace*faceSizeQuadHex; 2690e6ccafaeSMatthew G Knepley PetscInt fVertex, cVertex; 2691e6ccafaeSMatthew G Knepley 2692e6ccafaeSMatthew G Knepley if ((sortedIndices[0] == faceVerticesQuadHexSorted[ii+0]) && 2693e6ccafaeSMatthew G Knepley (sortedIndices[1] == faceVerticesQuadHexSorted[ii+1]) && 2694e6ccafaeSMatthew G Knepley (sortedIndices[2] == faceVerticesQuadHexSorted[ii+2]) && 2695e6ccafaeSMatthew G Knepley (sortedIndices[3] == faceVerticesQuadHexSorted[ii+3])) { 2696e6ccafaeSMatthew G Knepley for (fVertex = 0; fVertex < faceSizeQuadHex; ++fVertex) { 2697e6ccafaeSMatthew G Knepley for (cVertex = 0; cVertex < faceSizeQuadHex; ++cVertex) { 2698e6ccafaeSMatthew G Knepley if (indices[cVertex] == faceVerticesQuadHex[ii+fVertex]) { 2699e6ccafaeSMatthew G Knepley faceVertices[fVertex] = origVertices[cVertex]; 2700e6ccafaeSMatthew G Knepley break; 2701e6ccafaeSMatthew G Knepley } 2702e6ccafaeSMatthew G Knepley } 2703e6ccafaeSMatthew G Knepley } 2704e6ccafaeSMatthew G Knepley found = PETSC_TRUE; 2705e6ccafaeSMatthew G Knepley break; 2706e6ccafaeSMatthew G Knepley } 2707e6ccafaeSMatthew G Knepley } 2708e6ccafaeSMatthew G Knepley if (!found) SETERRQ(comm, PETSC_ERR_ARG_WRONG, "Invalid hex crossface"); 2709e6ccafaeSMatthew G Knepley if (posOriented) *posOriented = PETSC_TRUE; 2710e6ccafaeSMatthew G Knepley PetscFunctionReturn(0); 2711e6ccafaeSMatthew G Knepley } else SETERRQ(comm, PETSC_ERR_ARG_WRONG, "Unknown cell type for faceOrientation()."); 2712e6ccafaeSMatthew G Knepley if (!posOrient) { 2713e6ccafaeSMatthew G Knepley if (debug) {ierr = PetscPrintf(comm, " Reversing initial face orientation\n");CHKERRQ(ierr);} 2714e6ccafaeSMatthew G Knepley for (f = 0; f < faceSize; ++f) faceVertices[f] = origVertices[faceSize-1 - f]; 2715e6ccafaeSMatthew G Knepley } else { 2716e6ccafaeSMatthew G Knepley if (debug) {ierr = PetscPrintf(comm, " Keeping initial face orientation\n");CHKERRQ(ierr);} 2717e6ccafaeSMatthew G Knepley for (f = 0; f < faceSize; ++f) faceVertices[f] = origVertices[f]; 2718e6ccafaeSMatthew G Knepley } 2719e6ccafaeSMatthew G Knepley if (posOriented) *posOriented = posOrient; 2720e6ccafaeSMatthew G Knepley PetscFunctionReturn(0); 2721e6ccafaeSMatthew G Knepley } 2722e6ccafaeSMatthew G Knepley 2723c08575a3SMatthew G. Knepley /*@ 2724c08575a3SMatthew G. Knepley DMPlexGetOrientedFace - Given a cell and a face, as a set of vertices, return the oriented face, as a set of vertices, 2725c08575a3SMatthew G. Knepley in faceVertices. The orientation is such that the face normal points out of the cell 2726c08575a3SMatthew G. Knepley 2727c08575a3SMatthew G. Knepley Not collective 2728c08575a3SMatthew G. Knepley 2729c08575a3SMatthew G. Knepley Input Parameters: 2730c08575a3SMatthew G. Knepley + dm - The original mesh 2731c08575a3SMatthew G. Knepley . cell - The cell mesh point 2732c08575a3SMatthew G. Knepley . faceSize - The number of vertices on the face 2733c08575a3SMatthew G. Knepley . face - The face vertices 2734c08575a3SMatthew G. Knepley . numCorners - The number of vertices on the cell 2735c08575a3SMatthew G. Knepley . indices - Local numbering of face vertices in cell cone 2736c08575a3SMatthew G. Knepley - origVertices - Original face vertices 2737c08575a3SMatthew G. Knepley 2738c08575a3SMatthew G. Knepley Output Parameter: 2739c08575a3SMatthew G. Knepley + faceVertices - The face vertices properly oriented 2740c08575a3SMatthew G. Knepley - posOriented - PETSC_TRUE if the face was oriented with outward normal 2741c08575a3SMatthew G. Knepley 2742c08575a3SMatthew G. Knepley Level: developer 2743c08575a3SMatthew G. Knepley 2744c08575a3SMatthew G. Knepley .seealso: DMPlexGetCone() 2745c08575a3SMatthew G. Knepley @*/ 2746e6ccafaeSMatthew G Knepley PetscErrorCode DMPlexGetOrientedFace(DM dm, PetscInt cell, PetscInt faceSize, const PetscInt face[], PetscInt numCorners, PetscInt indices[], PetscInt origVertices[], PetscInt faceVertices[], PetscBool *posOriented) 2747e6ccafaeSMatthew G Knepley { 27480298fd71SBarry Smith const PetscInt *cone = NULL; 2749e6ccafaeSMatthew G Knepley PetscInt coneSize, v, f, v2; 2750e6ccafaeSMatthew G Knepley PetscInt oppositeVertex = -1; 2751e6ccafaeSMatthew G Knepley PetscErrorCode ierr; 2752e6ccafaeSMatthew G Knepley 2753e6ccafaeSMatthew G Knepley PetscFunctionBegin; 2754e6ccafaeSMatthew G Knepley ierr = DMPlexGetConeSize(dm, cell, &coneSize);CHKERRQ(ierr); 2755e6ccafaeSMatthew G Knepley ierr = DMPlexGetCone(dm, cell, &cone);CHKERRQ(ierr); 2756e6ccafaeSMatthew G Knepley for (v = 0, v2 = 0; v < coneSize; ++v) { 2757e6ccafaeSMatthew G Knepley PetscBool found = PETSC_FALSE; 2758e6ccafaeSMatthew G Knepley 2759e6ccafaeSMatthew G Knepley for (f = 0; f < faceSize; ++f) { 2760e6ccafaeSMatthew G Knepley if (face[f] == cone[v]) { 2761e6ccafaeSMatthew G Knepley found = PETSC_TRUE; break; 2762e6ccafaeSMatthew G Knepley } 2763e6ccafaeSMatthew G Knepley } 2764e6ccafaeSMatthew G Knepley if (found) { 2765e6ccafaeSMatthew G Knepley indices[v2] = v; 2766e6ccafaeSMatthew G Knepley origVertices[v2] = cone[v]; 2767e6ccafaeSMatthew G Knepley ++v2; 2768e6ccafaeSMatthew G Knepley } else { 2769e6ccafaeSMatthew G Knepley oppositeVertex = v; 2770e6ccafaeSMatthew G Knepley } 2771e6ccafaeSMatthew G Knepley } 2772e6ccafaeSMatthew G Knepley ierr = DMPlexGetFaceOrientation(dm, cell, numCorners, indices, oppositeVertex, origVertices, faceVertices, posOriented);CHKERRQ(ierr); 2773e6ccafaeSMatthew G Knepley PetscFunctionReturn(0); 2774e6ccafaeSMatthew G Knepley } 2775e6ccafaeSMatthew G Knepley 2776e6ccafaeSMatthew G Knepley /* 2777cd0c2139SMatthew G Knepley DMPlexInsertFace_Internal - Puts a face into the mesh 2778e6ccafaeSMatthew G Knepley 2779e6ccafaeSMatthew G Knepley Not collective 2780e6ccafaeSMatthew G Knepley 2781e6ccafaeSMatthew G Knepley Input Parameters: 2782e6ccafaeSMatthew G Knepley + dm - The DMPlex 2783e6ccafaeSMatthew G Knepley . numFaceVertex - The number of vertices in the face 2784e6ccafaeSMatthew G Knepley . faceVertices - The vertices in the face for dm 2785e6ccafaeSMatthew G Knepley . subfaceVertices - The vertices in the face for subdm 2786e6ccafaeSMatthew G Knepley . numCorners - The number of vertices in the cell 2787e6ccafaeSMatthew G Knepley . cell - A cell in dm containing the face 2788e6ccafaeSMatthew G Knepley . subcell - A cell in subdm containing the face 2789e6ccafaeSMatthew G Knepley . firstFace - First face in the mesh 2790e6ccafaeSMatthew G Knepley - newFacePoint - Next face in the mesh 2791e6ccafaeSMatthew G Knepley 2792e6ccafaeSMatthew G Knepley Output Parameters: 2793e6ccafaeSMatthew G Knepley . newFacePoint - Contains next face point number on input, updated on output 2794e6ccafaeSMatthew G Knepley 2795e6ccafaeSMatthew G Knepley Level: developer 2796e6ccafaeSMatthew G Knepley */ 2797cd0c2139SMatthew G Knepley static PetscErrorCode DMPlexInsertFace_Internal(DM dm, DM subdm, PetscInt numFaceVertices, const PetscInt faceVertices[], const PetscInt subfaceVertices[], PetscInt numCorners, PetscInt cell, PetscInt subcell, PetscInt firstFace, PetscInt *newFacePoint) 2798e6ccafaeSMatthew G Knepley { 279982f516ccSBarry Smith MPI_Comm comm; 2800e6ccafaeSMatthew G Knepley DM_Plex *submesh = (DM_Plex*) subdm->data; 2801e6ccafaeSMatthew G Knepley const PetscInt *faces; 2802e6ccafaeSMatthew G Knepley PetscInt numFaces, coneSize; 2803e6ccafaeSMatthew G Knepley PetscErrorCode ierr; 2804e6ccafaeSMatthew G Knepley 2805e6ccafaeSMatthew G Knepley PetscFunctionBegin; 280682f516ccSBarry Smith ierr = PetscObjectGetComm((PetscObject)dm,&comm);CHKERRQ(ierr); 2807e6ccafaeSMatthew G Knepley ierr = DMPlexGetConeSize(subdm, subcell, &coneSize);CHKERRQ(ierr); 2808e6ccafaeSMatthew G Knepley if (coneSize != 1) SETERRQ2(comm, PETSC_ERR_ARG_OUTOFRANGE, "Cone size of cell %d is %d != 1", cell, coneSize); 2809e6ccafaeSMatthew G Knepley #if 0 2810e6ccafaeSMatthew G Knepley /* Cannot use this because support() has not been constructed yet */ 2811e6ccafaeSMatthew G Knepley ierr = DMPlexGetJoin(subdm, numFaceVertices, subfaceVertices, &numFaces, &faces);CHKERRQ(ierr); 2812e6ccafaeSMatthew G Knepley #else 2813e6ccafaeSMatthew G Knepley { 2814e6ccafaeSMatthew G Knepley PetscInt f; 2815e6ccafaeSMatthew G Knepley 2816e6ccafaeSMatthew G Knepley numFaces = 0; 281769291d52SBarry Smith ierr = DMGetWorkArray(subdm, 1, MPIU_INT, (void **) &faces);CHKERRQ(ierr); 2818e6ccafaeSMatthew G Knepley for (f = firstFace; f < *newFacePoint; ++f) { 2819e6ccafaeSMatthew G Knepley PetscInt dof, off, d; 2820e6ccafaeSMatthew G Knepley 2821e6ccafaeSMatthew G Knepley ierr = PetscSectionGetDof(submesh->coneSection, f, &dof);CHKERRQ(ierr); 2822e6ccafaeSMatthew G Knepley ierr = PetscSectionGetOffset(submesh->coneSection, f, &off);CHKERRQ(ierr); 2823e6ccafaeSMatthew G Knepley /* Yes, I know this is quadratic, but I expect the sizes to be <5 */ 2824e6ccafaeSMatthew G Knepley for (d = 0; d < dof; ++d) { 2825e6ccafaeSMatthew G Knepley const PetscInt p = submesh->cones[off+d]; 2826e6ccafaeSMatthew G Knepley PetscInt v; 2827e6ccafaeSMatthew G Knepley 2828e6ccafaeSMatthew G Knepley for (v = 0; v < numFaceVertices; ++v) { 2829e6ccafaeSMatthew G Knepley if (subfaceVertices[v] == p) break; 2830e6ccafaeSMatthew G Knepley } 2831e6ccafaeSMatthew G Knepley if (v == numFaceVertices) break; 2832e6ccafaeSMatthew G Knepley } 2833e6ccafaeSMatthew G Knepley if (d == dof) { 2834e6ccafaeSMatthew G Knepley numFaces = 1; 2835e6ccafaeSMatthew G Knepley ((PetscInt*) faces)[0] = f; 2836e6ccafaeSMatthew G Knepley } 2837e6ccafaeSMatthew G Knepley } 2838e6ccafaeSMatthew G Knepley } 2839e6ccafaeSMatthew G Knepley #endif 2840e6ccafaeSMatthew G Knepley if (numFaces > 1) SETERRQ1(comm, PETSC_ERR_ARG_WRONG, "Vertex set had %d faces, not one", numFaces); 2841e6ccafaeSMatthew G Knepley else if (numFaces == 1) { 2842e6ccafaeSMatthew G Knepley /* Add the other cell neighbor for this face */ 2843766ab985SMatthew G. Knepley ierr = DMPlexSetCone(subdm, subcell, faces);CHKERRQ(ierr); 2844e6ccafaeSMatthew G Knepley } else { 2845e6ccafaeSMatthew G Knepley PetscInt *indices, *origVertices, *orientedVertices, *orientedSubVertices, v, ov; 2846e6ccafaeSMatthew G Knepley PetscBool posOriented; 2847e6ccafaeSMatthew G Knepley 284869291d52SBarry Smith ierr = DMGetWorkArray(subdm, 4*numFaceVertices * sizeof(PetscInt), MPIU_INT, &orientedVertices);CHKERRQ(ierr); 2849e6ccafaeSMatthew G Knepley origVertices = &orientedVertices[numFaceVertices]; 2850e6ccafaeSMatthew G Knepley indices = &orientedVertices[numFaceVertices*2]; 2851e6ccafaeSMatthew G Knepley orientedSubVertices = &orientedVertices[numFaceVertices*3]; 2852e6ccafaeSMatthew G Knepley ierr = DMPlexGetOrientedFace(dm, cell, numFaceVertices, faceVertices, numCorners, indices, origVertices, orientedVertices, &posOriented);CHKERRQ(ierr); 2853e6ccafaeSMatthew G Knepley /* TODO: I know that routine should return a permutation, not the indices */ 2854e6ccafaeSMatthew G Knepley for (v = 0; v < numFaceVertices; ++v) { 2855e6ccafaeSMatthew G Knepley const PetscInt vertex = faceVertices[v], subvertex = subfaceVertices[v]; 2856e6ccafaeSMatthew G Knepley for (ov = 0; ov < numFaceVertices; ++ov) { 2857e6ccafaeSMatthew G Knepley if (orientedVertices[ov] == vertex) { 2858e6ccafaeSMatthew G Knepley orientedSubVertices[ov] = subvertex; 2859e6ccafaeSMatthew G Knepley break; 2860e6ccafaeSMatthew G Knepley } 2861e6ccafaeSMatthew G Knepley } 2862e6ccafaeSMatthew G Knepley if (ov == numFaceVertices) SETERRQ1(comm, PETSC_ERR_PLIB, "Could not find face vertex %d in orientated set", vertex); 2863e6ccafaeSMatthew G Knepley } 2864e6ccafaeSMatthew G Knepley ierr = DMPlexSetCone(subdm, *newFacePoint, orientedSubVertices);CHKERRQ(ierr); 2865e6ccafaeSMatthew G Knepley ierr = DMPlexSetCone(subdm, subcell, newFacePoint);CHKERRQ(ierr); 286669291d52SBarry Smith ierr = DMRestoreWorkArray(subdm, 4*numFaceVertices * sizeof(PetscInt), MPIU_INT, &orientedVertices);CHKERRQ(ierr); 2867e6ccafaeSMatthew G Knepley ++(*newFacePoint); 2868e6ccafaeSMatthew G Knepley } 2869ef07cca7SMatthew G. Knepley #if 0 2870e6ccafaeSMatthew G Knepley ierr = DMPlexRestoreJoin(subdm, numFaceVertices, subfaceVertices, &numFaces, &faces);CHKERRQ(ierr); 2871ef07cca7SMatthew G. Knepley #else 287269291d52SBarry Smith ierr = DMRestoreWorkArray(subdm, 1, MPIU_INT, (void **) &faces);CHKERRQ(ierr); 2873ef07cca7SMatthew G. Knepley #endif 2874e6ccafaeSMatthew G Knepley PetscFunctionReturn(0); 2875e6ccafaeSMatthew G Knepley } 2876e6ccafaeSMatthew G Knepley 287753156dfcSMatthew G. Knepley static PetscErrorCode DMPlexCreateSubmesh_Uninterpolated(DM dm, DMLabel vertexLabel, PetscInt value, DM subdm) 2878e6ccafaeSMatthew G Knepley { 287982f516ccSBarry Smith MPI_Comm comm; 288053156dfcSMatthew G. Knepley DMLabel subpointMap; 2881efa14ee0SMatthew G Knepley IS subvertexIS, subcellIS; 2882efa14ee0SMatthew G Knepley const PetscInt *subVertices, *subCells; 2883efa14ee0SMatthew G Knepley PetscInt numSubVertices, firstSubVertex, numSubCells; 2884fed694aaSMatthew G. Knepley PetscInt *subface, maxConeSize, numSubFaces = 0, firstSubFace, newFacePoint, nFV = 0; 2885efa14ee0SMatthew G Knepley PetscInt vStart, vEnd, c, f; 2886e6ccafaeSMatthew G Knepley PetscErrorCode ierr; 2887e6ccafaeSMatthew G Knepley 2888e6ccafaeSMatthew G Knepley PetscFunctionBegin; 288982f516ccSBarry Smith ierr = PetscObjectGetComm((PetscObject)dm,&comm);CHKERRQ(ierr); 2890efa14ee0SMatthew G Knepley /* Create subpointMap which marks the submesh */ 2891d67d17b1SMatthew G. Knepley ierr = DMLabelCreate(PETSC_COMM_SELF, "subpoint_map", &subpointMap);CHKERRQ(ierr); 2892efa14ee0SMatthew G Knepley ierr = DMPlexSetSubpointMap(subdm, subpointMap);CHKERRQ(ierr); 2893efa14ee0SMatthew G Knepley ierr = DMLabelDestroy(&subpointMap);CHKERRQ(ierr); 289453156dfcSMatthew G. Knepley if (vertexLabel) {ierr = DMPlexMarkSubmesh_Uninterpolated(dm, vertexLabel, value, subpointMap, &numSubFaces, &nFV, subdm);CHKERRQ(ierr);} 2895efa14ee0SMatthew G Knepley /* Setup chart */ 2896efa14ee0SMatthew G Knepley ierr = DMLabelGetStratumSize(subpointMap, 0, &numSubVertices);CHKERRQ(ierr); 2897efa14ee0SMatthew G Knepley ierr = DMLabelGetStratumSize(subpointMap, 2, &numSubCells);CHKERRQ(ierr); 2898efa14ee0SMatthew G Knepley ierr = DMPlexSetChart(subdm, 0, numSubCells+numSubFaces+numSubVertices);CHKERRQ(ierr); 2899efa14ee0SMatthew G Knepley ierr = DMPlexSetVTKCellHeight(subdm, 1);CHKERRQ(ierr); 2900e6ccafaeSMatthew G Knepley /* Set cone sizes */ 2901e6ccafaeSMatthew G Knepley firstSubVertex = numSubCells; 2902efa14ee0SMatthew G Knepley firstSubFace = numSubCells+numSubVertices; 2903e6ccafaeSMatthew G Knepley newFacePoint = firstSubFace; 2904efa14ee0SMatthew G Knepley ierr = DMLabelGetStratumIS(subpointMap, 0, &subvertexIS);CHKERRQ(ierr); 2905efa14ee0SMatthew G Knepley if (subvertexIS) {ierr = ISGetIndices(subvertexIS, &subVertices);CHKERRQ(ierr);} 2906efa14ee0SMatthew G Knepley ierr = DMLabelGetStratumIS(subpointMap, 2, &subcellIS);CHKERRQ(ierr); 2907efa14ee0SMatthew G Knepley if (subcellIS) {ierr = ISGetIndices(subcellIS, &subCells);CHKERRQ(ierr);} 2908e6ccafaeSMatthew G Knepley for (c = 0; c < numSubCells; ++c) { 2909e6ccafaeSMatthew G Knepley ierr = DMPlexSetConeSize(subdm, c, 1);CHKERRQ(ierr); 2910e6ccafaeSMatthew G Knepley } 2911e6ccafaeSMatthew G Knepley for (f = firstSubFace; f < firstSubFace+numSubFaces; ++f) { 2912e6ccafaeSMatthew G Knepley ierr = DMPlexSetConeSize(subdm, f, nFV);CHKERRQ(ierr); 2913e6ccafaeSMatthew G Knepley } 2914e6ccafaeSMatthew G Knepley ierr = DMSetUp(subdm);CHKERRQ(ierr); 2915e6ccafaeSMatthew G Knepley /* Create face cones */ 2916efa14ee0SMatthew G Knepley ierr = DMPlexGetDepthStratum(dm, 0, &vStart, &vEnd);CHKERRQ(ierr); 29170298fd71SBarry Smith ierr = DMPlexGetMaxSizes(dm, &maxConeSize, NULL);CHKERRQ(ierr); 291869291d52SBarry Smith ierr = DMGetWorkArray(subdm, maxConeSize, MPIU_INT, (void**) &subface);CHKERRQ(ierr); 2919e6ccafaeSMatthew G Knepley for (c = 0; c < numSubCells; ++c) { 2920e6ccafaeSMatthew G Knepley const PetscInt cell = subCells[c]; 2921efa14ee0SMatthew G Knepley const PetscInt subcell = c; 29220298fd71SBarry Smith PetscInt *closure = NULL; 2923efa14ee0SMatthew G Knepley PetscInt closureSize, cl, numCorners = 0, faceSize = 0; 2924e6ccafaeSMatthew G Knepley 2925e6ccafaeSMatthew G Knepley ierr = DMPlexGetTransitiveClosure(dm, cell, PETSC_TRUE, &closureSize, &closure);CHKERRQ(ierr); 2926efa14ee0SMatthew G Knepley for (cl = 0; cl < closureSize*2; cl += 2) { 2927efa14ee0SMatthew G Knepley const PetscInt point = closure[cl]; 2928e6ccafaeSMatthew G Knepley PetscInt subVertex; 2929e6ccafaeSMatthew G Knepley 2930efa14ee0SMatthew G Knepley if ((point >= vStart) && (point < vEnd)) { 2931efa14ee0SMatthew G Knepley ++numCorners; 2932efa14ee0SMatthew G Knepley ierr = PetscFindInt(point, numSubVertices, subVertices, &subVertex);CHKERRQ(ierr); 2933efa14ee0SMatthew G Knepley if (subVertex >= 0) { 2934efa14ee0SMatthew G Knepley closure[faceSize] = point; 293565560c7fSMatthew G Knepley subface[faceSize] = firstSubVertex+subVertex; 2936e6ccafaeSMatthew G Knepley ++faceSize; 2937e6ccafaeSMatthew G Knepley } 2938e6ccafaeSMatthew G Knepley } 2939e6ccafaeSMatthew G Knepley } 2940efa14ee0SMatthew G Knepley if (faceSize > nFV) SETERRQ1(comm, PETSC_ERR_ARG_WRONG, "Invalid submesh: Too many vertices %d of an element on the surface", faceSize); 2941efa14ee0SMatthew G Knepley if (faceSize == nFV) { 2942cd0c2139SMatthew G Knepley ierr = DMPlexInsertFace_Internal(dm, subdm, faceSize, closure, subface, numCorners, cell, subcell, firstSubFace, &newFacePoint);CHKERRQ(ierr); 2943e6ccafaeSMatthew G Knepley } 294465560c7fSMatthew G Knepley ierr = DMPlexRestoreTransitiveClosure(dm, cell, PETSC_TRUE, &closureSize, &closure);CHKERRQ(ierr); 2945e6ccafaeSMatthew G Knepley } 294669291d52SBarry Smith ierr = DMRestoreWorkArray(subdm, maxConeSize, MPIU_INT, (void**) &subface);CHKERRQ(ierr); 2947e6ccafaeSMatthew G Knepley ierr = DMPlexSymmetrize(subdm);CHKERRQ(ierr); 2948e6ccafaeSMatthew G Knepley ierr = DMPlexStratify(subdm);CHKERRQ(ierr); 2949e6ccafaeSMatthew G Knepley /* Build coordinates */ 2950efa14ee0SMatthew G Knepley { 2951efa14ee0SMatthew G Knepley PetscSection coordSection, subCoordSection; 2952efa14ee0SMatthew G Knepley Vec coordinates, subCoordinates; 2953efa14ee0SMatthew G Knepley PetscScalar *coords, *subCoords; 2954285d324eSMatthew G. Knepley PetscInt numComp, coordSize, v; 295524640c55SToby Isaac const char *name; 2956efa14ee0SMatthew G Knepley 295769d8a9ceSMatthew G. Knepley ierr = DMGetCoordinateSection(dm, &coordSection);CHKERRQ(ierr); 2958e6ccafaeSMatthew G Knepley ierr = DMGetCoordinatesLocal(dm, &coordinates);CHKERRQ(ierr); 295969d8a9ceSMatthew G. Knepley ierr = DMGetCoordinateSection(subdm, &subCoordSection);CHKERRQ(ierr); 2960285d324eSMatthew G. Knepley ierr = PetscSectionSetNumFields(subCoordSection, 1);CHKERRQ(ierr); 2961285d324eSMatthew G. Knepley ierr = PetscSectionGetFieldComponents(coordSection, 0, &numComp);CHKERRQ(ierr); 2962285d324eSMatthew G. Knepley ierr = PetscSectionSetFieldComponents(subCoordSection, 0, numComp);CHKERRQ(ierr); 2963efa14ee0SMatthew G Knepley ierr = PetscSectionSetChart(subCoordSection, firstSubVertex, firstSubVertex+numSubVertices);CHKERRQ(ierr); 2964efa14ee0SMatthew G Knepley for (v = 0; v < numSubVertices; ++v) { 2965efa14ee0SMatthew G Knepley const PetscInt vertex = subVertices[v]; 2966efa14ee0SMatthew G Knepley const PetscInt subvertex = firstSubVertex+v; 2967efa14ee0SMatthew G Knepley PetscInt dof; 2968efa14ee0SMatthew G Knepley 2969efa14ee0SMatthew G Knepley ierr = PetscSectionGetDof(coordSection, vertex, &dof);CHKERRQ(ierr); 2970efa14ee0SMatthew G Knepley ierr = PetscSectionSetDof(subCoordSection, subvertex, dof);CHKERRQ(ierr); 2971285d324eSMatthew G. Knepley ierr = PetscSectionSetFieldDof(subCoordSection, subvertex, 0, dof);CHKERRQ(ierr); 2972e6ccafaeSMatthew G Knepley } 2973e6ccafaeSMatthew G Knepley ierr = PetscSectionSetUp(subCoordSection);CHKERRQ(ierr); 2974e6ccafaeSMatthew G Knepley ierr = PetscSectionGetStorageSize(subCoordSection, &coordSize);CHKERRQ(ierr); 29758b9ced59SLisandro Dalcin ierr = VecCreate(PETSC_COMM_SELF, &subCoordinates);CHKERRQ(ierr); 297624640c55SToby Isaac ierr = PetscObjectGetName((PetscObject)coordinates,&name);CHKERRQ(ierr); 297724640c55SToby Isaac ierr = PetscObjectSetName((PetscObject)subCoordinates,name);CHKERRQ(ierr); 2978e6ccafaeSMatthew G Knepley ierr = VecSetSizes(subCoordinates, coordSize, PETSC_DETERMINE);CHKERRQ(ierr); 29792eb5907fSJed Brown ierr = VecSetType(subCoordinates,VECSTANDARD);CHKERRQ(ierr); 2980830e53efSMatthew G. Knepley if (coordSize) { 2981e6ccafaeSMatthew G Knepley ierr = VecGetArray(coordinates, &coords);CHKERRQ(ierr); 2982e6ccafaeSMatthew G Knepley ierr = VecGetArray(subCoordinates, &subCoords);CHKERRQ(ierr); 2983efa14ee0SMatthew G Knepley for (v = 0; v < numSubVertices; ++v) { 2984efa14ee0SMatthew G Knepley const PetscInt vertex = subVertices[v]; 2985efa14ee0SMatthew G Knepley const PetscInt subvertex = firstSubVertex+v; 2986efa14ee0SMatthew G Knepley PetscInt dof, off, sdof, soff, d; 2987e6ccafaeSMatthew G Knepley 2988e6ccafaeSMatthew G Knepley ierr = PetscSectionGetDof(coordSection, vertex, &dof);CHKERRQ(ierr); 2989e6ccafaeSMatthew G Knepley ierr = PetscSectionGetOffset(coordSection, vertex, &off);CHKERRQ(ierr); 2990efa14ee0SMatthew G Knepley ierr = PetscSectionGetDof(subCoordSection, subvertex, &sdof);CHKERRQ(ierr); 2991efa14ee0SMatthew G Knepley ierr = PetscSectionGetOffset(subCoordSection, subvertex, &soff);CHKERRQ(ierr); 2992efa14ee0SMatthew G Knepley if (dof != sdof) SETERRQ4(comm, PETSC_ERR_PLIB, "Coordinate dimension %d on subvertex %d, vertex %d should be %d", sdof, subvertex, vertex, dof); 2993e6ccafaeSMatthew G Knepley for (d = 0; d < dof; ++d) subCoords[soff+d] = coords[off+d]; 2994e6ccafaeSMatthew G Knepley } 2995e6ccafaeSMatthew G Knepley ierr = VecRestoreArray(coordinates, &coords);CHKERRQ(ierr); 2996e6ccafaeSMatthew G Knepley ierr = VecRestoreArray(subCoordinates, &subCoords);CHKERRQ(ierr); 29973b399e24SMatthew G. Knepley } 2998e6ccafaeSMatthew G Knepley ierr = DMSetCoordinatesLocal(subdm, subCoordinates);CHKERRQ(ierr); 2999e6ccafaeSMatthew G Knepley ierr = VecDestroy(&subCoordinates);CHKERRQ(ierr); 3000e6ccafaeSMatthew G Knepley } 3001efa14ee0SMatthew G Knepley /* Cleanup */ 3002efa14ee0SMatthew G Knepley if (subvertexIS) {ierr = ISRestoreIndices(subvertexIS, &subVertices);CHKERRQ(ierr);} 3003efa14ee0SMatthew G Knepley ierr = ISDestroy(&subvertexIS);CHKERRQ(ierr); 3004efa14ee0SMatthew G Knepley if (subcellIS) {ierr = ISRestoreIndices(subcellIS, &subCells);CHKERRQ(ierr);} 3005efa14ee0SMatthew G Knepley ierr = ISDestroy(&subcellIS);CHKERRQ(ierr); 3006e6ccafaeSMatthew G Knepley PetscFunctionReturn(0); 3007e6ccafaeSMatthew G Knepley } 3008e6ccafaeSMatthew G Knepley 30093982b651SMatthew G. Knepley PETSC_STATIC_INLINE PetscInt DMPlexFilterPoint_Internal(PetscInt point, PetscInt firstSubPoint, PetscInt numSubPoints, const PetscInt subPoints[]) 30103982b651SMatthew G. Knepley { 30113982b651SMatthew G. Knepley PetscInt subPoint; 30123982b651SMatthew G. Knepley PetscErrorCode ierr; 30133982b651SMatthew G. Knepley 30143982b651SMatthew G. Knepley ierr = PetscFindInt(point, numSubPoints, subPoints, &subPoint); if (ierr < 0) return ierr; 30153982b651SMatthew G. Knepley return subPoint < 0 ? subPoint : firstSubPoint+subPoint; 30163982b651SMatthew G. Knepley } 30173982b651SMatthew G. Knepley 3018158acfadSMatthew G. Knepley static PetscErrorCode DMPlexCreateSubmeshGeneric_Interpolated(DM dm, DMLabel label, PetscInt value, PetscBool markedFaces, PetscBool isCohesive, PetscInt cellHeight, DM subdm) 3019e6ccafaeSMatthew G Knepley { 302082f516ccSBarry Smith MPI_Comm comm; 302153156dfcSMatthew G. Knepley DMLabel subpointMap; 3022efa14ee0SMatthew G Knepley IS *subpointIS; 3023efa14ee0SMatthew G Knepley const PetscInt **subpoints; 30243982b651SMatthew G. Knepley PetscInt *numSubPoints, *firstSubPoint, *coneNew, *orntNew; 3025412e9a14SMatthew G. Knepley PetscInt totSubPoints = 0, maxConeSize, dim, p, d, v; 30260d366550SMatthew G. Knepley PetscMPIInt rank; 3027e6ccafaeSMatthew G Knepley PetscErrorCode ierr; 3028e6ccafaeSMatthew G Knepley 3029e6ccafaeSMatthew G Knepley PetscFunctionBegin; 303082f516ccSBarry Smith ierr = PetscObjectGetComm((PetscObject)dm,&comm);CHKERRQ(ierr); 3031ffc4695bSBarry Smith ierr = MPI_Comm_rank(comm, &rank);CHKERRMPI(ierr); 3032efa14ee0SMatthew G Knepley /* Create subpointMap which marks the submesh */ 3033d67d17b1SMatthew G. Knepley ierr = DMLabelCreate(PETSC_COMM_SELF, "subpoint_map", &subpointMap);CHKERRQ(ierr); 3034efa14ee0SMatthew G Knepley ierr = DMPlexSetSubpointMap(subdm, subpointMap);CHKERRQ(ierr); 3035bec263e5SMatthew G. Knepley if (cellHeight) { 30363982b651SMatthew G. Knepley if (isCohesive) {ierr = DMPlexMarkCohesiveSubmesh_Interpolated(dm, label, value, subpointMap, subdm);CHKERRQ(ierr);} 3037158acfadSMatthew G. Knepley else {ierr = DMPlexMarkSubmesh_Interpolated(dm, label, value, markedFaces, subpointMap, subdm);CHKERRQ(ierr);} 3038bec263e5SMatthew G. Knepley } else { 3039bec263e5SMatthew G. Knepley DMLabel depth; 3040bec263e5SMatthew G. Knepley IS pointIS; 3041bec263e5SMatthew G. Knepley const PetscInt *points; 3042b85c8bf9SMatthew G. Knepley PetscInt numPoints=0; 3043bec263e5SMatthew G. Knepley 3044bec263e5SMatthew G. Knepley ierr = DMPlexGetDepthLabel(dm, &depth);CHKERRQ(ierr); 3045bec263e5SMatthew G. Knepley ierr = DMLabelGetStratumIS(label, value, &pointIS);CHKERRQ(ierr); 3046b85c8bf9SMatthew G. Knepley if (pointIS) { 3047bec263e5SMatthew G. Knepley ierr = ISGetIndices(pointIS, &points);CHKERRQ(ierr); 3048b85c8bf9SMatthew G. Knepley ierr = ISGetLocalSize(pointIS, &numPoints);CHKERRQ(ierr); 3049b85c8bf9SMatthew G. Knepley } 3050bec263e5SMatthew G. Knepley for (p = 0; p < numPoints; ++p) { 3051bec263e5SMatthew G. Knepley PetscInt *closure = NULL; 3052bec263e5SMatthew G. Knepley PetscInt closureSize, c, pdim; 3053bec263e5SMatthew G. Knepley 3054bec263e5SMatthew G. Knepley ierr = DMPlexGetTransitiveClosure(dm, points[p], PETSC_TRUE, &closureSize, &closure);CHKERRQ(ierr); 3055bec263e5SMatthew G. Knepley for (c = 0; c < closureSize*2; c += 2) { 3056bec263e5SMatthew G. Knepley ierr = DMLabelGetValue(depth, closure[c], &pdim);CHKERRQ(ierr); 3057bec263e5SMatthew G. Knepley ierr = DMLabelSetValue(subpointMap, closure[c], pdim);CHKERRQ(ierr); 3058bec263e5SMatthew G. Knepley } 3059bec263e5SMatthew G. Knepley ierr = DMPlexRestoreTransitiveClosure(dm, points[p], PETSC_TRUE, &closureSize, &closure);CHKERRQ(ierr); 3060bec263e5SMatthew G. Knepley } 3061b85c8bf9SMatthew G. Knepley if (pointIS) {ierr = ISRestoreIndices(pointIS, &points);CHKERRQ(ierr);} 3062bec263e5SMatthew G. Knepley ierr = ISDestroy(&pointIS);CHKERRQ(ierr); 3063bec263e5SMatthew G. Knepley } 3064efa14ee0SMatthew G Knepley /* Setup chart */ 3065c73cfb54SMatthew G. Knepley ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr); 3066dcca6d9dSJed Brown ierr = PetscMalloc4(dim+1,&numSubPoints,dim+1,&firstSubPoint,dim+1,&subpointIS,dim+1,&subpoints);CHKERRQ(ierr); 3067e6ccafaeSMatthew G Knepley for (d = 0; d <= dim; ++d) { 3068e6ccafaeSMatthew G Knepley ierr = DMLabelGetStratumSize(subpointMap, d, &numSubPoints[d]);CHKERRQ(ierr); 3069e6ccafaeSMatthew G Knepley totSubPoints += numSubPoints[d]; 3070e6ccafaeSMatthew G Knepley } 3071e6ccafaeSMatthew G Knepley ierr = DMPlexSetChart(subdm, 0, totSubPoints);CHKERRQ(ierr); 3072bec263e5SMatthew G. Knepley ierr = DMPlexSetVTKCellHeight(subdm, cellHeight);CHKERRQ(ierr); 3073e6ccafaeSMatthew G Knepley /* Set cone sizes */ 3074e6ccafaeSMatthew G Knepley firstSubPoint[dim] = 0; 3075e6ccafaeSMatthew G Knepley firstSubPoint[0] = firstSubPoint[dim] + numSubPoints[dim]; 3076e6ccafaeSMatthew G Knepley if (dim > 1) {firstSubPoint[dim-1] = firstSubPoint[0] + numSubPoints[0];} 3077e6ccafaeSMatthew G Knepley if (dim > 2) {firstSubPoint[dim-2] = firstSubPoint[dim-1] + numSubPoints[dim-1];} 3078e6ccafaeSMatthew G Knepley for (d = 0; d <= dim; ++d) { 3079e6ccafaeSMatthew G Knepley ierr = DMLabelGetStratumIS(subpointMap, d, &subpointIS[d]);CHKERRQ(ierr); 30800ae02aa4SMatthew G. Knepley if (subpointIS[d]) {ierr = ISGetIndices(subpointIS[d], &subpoints[d]);CHKERRQ(ierr);} 3081e6ccafaeSMatthew G Knepley } 3082412e9a14SMatthew G. Knepley /* We do not want this label automatically computed, instead we compute it here */ 3083412e9a14SMatthew G. Knepley ierr = DMCreateLabel(subdm, "celltype");CHKERRQ(ierr); 3084e6ccafaeSMatthew G Knepley for (d = 0; d <= dim; ++d) { 3085e6ccafaeSMatthew G Knepley for (p = 0; p < numSubPoints[d]; ++p) { 3086e6ccafaeSMatthew G Knepley const PetscInt point = subpoints[d][p]; 3087e6ccafaeSMatthew G Knepley const PetscInt subpoint = firstSubPoint[d] + p; 3088e6ccafaeSMatthew G Knepley const PetscInt *cone; 3089e6ccafaeSMatthew G Knepley PetscInt coneSize, coneSizeNew, c, val; 3090412e9a14SMatthew G. Knepley DMPolytopeType ct; 3091e6ccafaeSMatthew G Knepley 3092e6ccafaeSMatthew G Knepley ierr = DMPlexGetConeSize(dm, point, &coneSize);CHKERRQ(ierr); 3093e6ccafaeSMatthew G Knepley ierr = DMPlexSetConeSize(subdm, subpoint, coneSize);CHKERRQ(ierr); 3094412e9a14SMatthew G. Knepley ierr = DMPlexGetCellType(dm, point, &ct);CHKERRQ(ierr); 3095412e9a14SMatthew G. Knepley ierr = DMPlexSetCellType(subdm, subpoint, ct);CHKERRQ(ierr); 3096bec263e5SMatthew G. Knepley if (cellHeight && (d == dim)) { 3097e6ccafaeSMatthew G Knepley ierr = DMPlexGetCone(dm, point, &cone);CHKERRQ(ierr); 3098e6ccafaeSMatthew G Knepley for (c = 0, coneSizeNew = 0; c < coneSize; ++c) { 3099e6ccafaeSMatthew G Knepley ierr = DMLabelGetValue(subpointMap, cone[c], &val);CHKERRQ(ierr); 3100e6ccafaeSMatthew G Knepley if (val >= 0) coneSizeNew++; 3101e6ccafaeSMatthew G Knepley } 3102e6ccafaeSMatthew G Knepley ierr = DMPlexSetConeSize(subdm, subpoint, coneSizeNew);CHKERRQ(ierr); 3103412e9a14SMatthew G. Knepley ierr = DMPlexSetCellType(subdm, subpoint, DM_POLYTOPE_FV_GHOST);CHKERRQ(ierr); 3104e6ccafaeSMatthew G Knepley } 3105e6ccafaeSMatthew G Knepley } 3106e6ccafaeSMatthew G Knepley } 3107d67d17b1SMatthew G. Knepley ierr = DMLabelDestroy(&subpointMap);CHKERRQ(ierr); 3108e6ccafaeSMatthew G Knepley ierr = DMSetUp(subdm);CHKERRQ(ierr); 3109e6ccafaeSMatthew G Knepley /* Set cones */ 31100298fd71SBarry Smith ierr = DMPlexGetMaxSizes(dm, &maxConeSize, NULL);CHKERRQ(ierr); 31113982b651SMatthew G. Knepley ierr = PetscMalloc2(maxConeSize,&coneNew,maxConeSize,&orntNew);CHKERRQ(ierr); 3112e6ccafaeSMatthew G Knepley for (d = 0; d <= dim; ++d) { 3113e6ccafaeSMatthew G Knepley for (p = 0; p < numSubPoints[d]; ++p) { 3114e6ccafaeSMatthew G Knepley const PetscInt point = subpoints[d][p]; 3115e6ccafaeSMatthew G Knepley const PetscInt subpoint = firstSubPoint[d] + p; 31160e49e2e2SMatthew G. Knepley const PetscInt *cone, *ornt; 31170d366550SMatthew G. Knepley PetscInt coneSize, subconeSize, coneSizeNew, c, subc, fornt = 0; 3118e6ccafaeSMatthew G Knepley 31190d366550SMatthew G. Knepley if (d == dim-1) { 31200d366550SMatthew G. Knepley const PetscInt *support, *cone, *ornt; 31210d366550SMatthew G. Knepley PetscInt supportSize, coneSize, s, subc; 31220d366550SMatthew G. Knepley 31230d366550SMatthew G. Knepley ierr = DMPlexGetSupport(dm, point, &support);CHKERRQ(ierr); 31240d366550SMatthew G. Knepley ierr = DMPlexGetSupportSize(dm, point, &supportSize);CHKERRQ(ierr); 31250d366550SMatthew G. Knepley for (s = 0; s < supportSize; ++s) { 3126412e9a14SMatthew G. Knepley PetscBool isHybrid; 3127412e9a14SMatthew G. Knepley 3128412e9a14SMatthew G. Knepley ierr = DMPlexCellIsHybrid_Internal(dm, support[s], &isHybrid);CHKERRQ(ierr); 3129412e9a14SMatthew G. Knepley if (!isHybrid) continue; 31300d366550SMatthew G. Knepley ierr = PetscFindInt(support[s], numSubPoints[d+1], subpoints[d+1], &subc);CHKERRQ(ierr); 31310d366550SMatthew G. Knepley if (subc >= 0) { 31320d366550SMatthew G. Knepley const PetscInt ccell = subpoints[d+1][subc]; 31330d366550SMatthew G. Knepley 31347f79407eSBarry Smith ierr = DMPlexGetCone(dm, ccell, &cone);CHKERRQ(ierr); 31357f79407eSBarry Smith ierr = DMPlexGetConeSize(dm, ccell, &coneSize);CHKERRQ(ierr); 31367f79407eSBarry Smith ierr = DMPlexGetConeOrientation(dm, ccell, &ornt);CHKERRQ(ierr); 31370d366550SMatthew G. Knepley for (c = 0; c < coneSize; ++c) { 31380d366550SMatthew G. Knepley if (cone[c] == point) { 31390d366550SMatthew G. Knepley fornt = ornt[c]; 31400d366550SMatthew G. Knepley break; 31410d366550SMatthew G. Knepley } 31420d366550SMatthew G. Knepley } 31430d366550SMatthew G. Knepley break; 31440d366550SMatthew G. Knepley } 31450d366550SMatthew G. Knepley } 31460d366550SMatthew G. Knepley } 3147e6ccafaeSMatthew G Knepley ierr = DMPlexGetConeSize(dm, point, &coneSize);CHKERRQ(ierr); 3148e6ccafaeSMatthew G Knepley ierr = DMPlexGetConeSize(subdm, subpoint, &subconeSize);CHKERRQ(ierr); 3149e6ccafaeSMatthew G Knepley ierr = DMPlexGetCone(dm, point, &cone);CHKERRQ(ierr); 31500e49e2e2SMatthew G. Knepley ierr = DMPlexGetConeOrientation(dm, point, &ornt);CHKERRQ(ierr); 3151e6ccafaeSMatthew G Knepley for (c = 0, coneSizeNew = 0; c < coneSize; ++c) { 3152e6ccafaeSMatthew G Knepley ierr = PetscFindInt(cone[c], numSubPoints[d-1], subpoints[d-1], &subc);CHKERRQ(ierr); 315301a2673eSMatthew G. Knepley if (subc >= 0) { 315401a2673eSMatthew G. Knepley coneNew[coneSizeNew] = firstSubPoint[d-1] + subc; 31553982b651SMatthew G. Knepley orntNew[coneSizeNew] = ornt[c]; 315601a2673eSMatthew G. Knepley ++coneSizeNew; 315701a2673eSMatthew G. Knepley } 3158e6ccafaeSMatthew G Knepley } 3159e6ccafaeSMatthew G Knepley if (coneSizeNew != subconeSize) SETERRQ2(comm, PETSC_ERR_PLIB, "Number of cone points located %d does not match subcone size %d", coneSizeNew, subconeSize); 31600d366550SMatthew G. Knepley if (fornt < 0) { 31610d366550SMatthew G. Knepley /* This should be replaced by a call to DMPlexReverseCell() */ 31620d366550SMatthew G. Knepley #if 0 3163a129c400SMatthew G. Knepley ierr = DMPlexReverseCell(subdm, subpoint);CHKERRQ(ierr); 3164a129c400SMatthew G. Knepley #else 3165c0b40891SMatthew G. Knepley for (c = 0; c < coneSizeNew/2 + coneSizeNew%2; ++c) { 3166a129c400SMatthew G. Knepley PetscInt faceSize, tmp; 31670d366550SMatthew G. Knepley 31680d366550SMatthew G. Knepley tmp = coneNew[c]; 31690d366550SMatthew G. Knepley coneNew[c] = coneNew[coneSizeNew-1-c]; 31700d366550SMatthew G. Knepley coneNew[coneSizeNew-1-c] = tmp; 3171a129c400SMatthew G. Knepley ierr = DMPlexGetConeSize(dm, cone[c], &faceSize);CHKERRQ(ierr); 3172a129c400SMatthew G. Knepley tmp = orntNew[c] >= 0 ? -(faceSize-orntNew[c]) : faceSize+orntNew[c]; 3173a129c400SMatthew G. Knepley orntNew[c] = orntNew[coneSizeNew-1-c] >= 0 ? -(faceSize-orntNew[coneSizeNew-1-c]) : faceSize+orntNew[coneSizeNew-1-c]; 31740d366550SMatthew G. Knepley orntNew[coneSizeNew-1-c] = tmp; 31750d366550SMatthew G. Knepley } 31760d366550SMatthew G. Knepley } 3177e6ccafaeSMatthew G Knepley ierr = DMPlexSetCone(subdm, subpoint, coneNew);CHKERRQ(ierr); 31783982b651SMatthew G. Knepley ierr = DMPlexSetConeOrientation(subdm, subpoint, orntNew);CHKERRQ(ierr); 3179a129c400SMatthew G. Knepley #endif 3180e6ccafaeSMatthew G Knepley } 3181e6ccafaeSMatthew G Knepley } 31823982b651SMatthew G. Knepley ierr = PetscFree2(coneNew,orntNew);CHKERRQ(ierr); 3183e6ccafaeSMatthew G Knepley ierr = DMPlexSymmetrize(subdm);CHKERRQ(ierr); 3184e6ccafaeSMatthew G Knepley ierr = DMPlexStratify(subdm);CHKERRQ(ierr); 3185e6ccafaeSMatthew G Knepley /* Build coordinates */ 3186e6ccafaeSMatthew G Knepley { 3187e6ccafaeSMatthew G Knepley PetscSection coordSection, subCoordSection; 3188e6ccafaeSMatthew G Knepley Vec coordinates, subCoordinates; 3189e6ccafaeSMatthew G Knepley PetscScalar *coords, *subCoords; 3190c0e8cf5fSMatthew G. Knepley PetscInt cdim, numComp, coordSize; 319124640c55SToby Isaac const char *name; 3192e6ccafaeSMatthew G Knepley 3193c0e8cf5fSMatthew G. Knepley ierr = DMGetCoordinateDim(dm, &cdim);CHKERRQ(ierr); 319469d8a9ceSMatthew G. Knepley ierr = DMGetCoordinateSection(dm, &coordSection);CHKERRQ(ierr); 3195e6ccafaeSMatthew G Knepley ierr = DMGetCoordinatesLocal(dm, &coordinates);CHKERRQ(ierr); 319669d8a9ceSMatthew G. Knepley ierr = DMGetCoordinateSection(subdm, &subCoordSection);CHKERRQ(ierr); 3197285d324eSMatthew G. Knepley ierr = PetscSectionSetNumFields(subCoordSection, 1);CHKERRQ(ierr); 3198285d324eSMatthew G. Knepley ierr = PetscSectionGetFieldComponents(coordSection, 0, &numComp);CHKERRQ(ierr); 3199285d324eSMatthew G. Knepley ierr = PetscSectionSetFieldComponents(subCoordSection, 0, numComp);CHKERRQ(ierr); 3200e6ccafaeSMatthew G Knepley ierr = PetscSectionSetChart(subCoordSection, firstSubPoint[0], firstSubPoint[0]+numSubPoints[0]);CHKERRQ(ierr); 3201e6ccafaeSMatthew G Knepley for (v = 0; v < numSubPoints[0]; ++v) { 3202e6ccafaeSMatthew G Knepley const PetscInt vertex = subpoints[0][v]; 3203e6ccafaeSMatthew G Knepley const PetscInt subvertex = firstSubPoint[0]+v; 3204e6ccafaeSMatthew G Knepley PetscInt dof; 3205e6ccafaeSMatthew G Knepley 3206e6ccafaeSMatthew G Knepley ierr = PetscSectionGetDof(coordSection, vertex, &dof);CHKERRQ(ierr); 3207e6ccafaeSMatthew G Knepley ierr = PetscSectionSetDof(subCoordSection, subvertex, dof);CHKERRQ(ierr); 3208285d324eSMatthew G. Knepley ierr = PetscSectionSetFieldDof(subCoordSection, subvertex, 0, dof);CHKERRQ(ierr); 3209e6ccafaeSMatthew G Knepley } 3210e6ccafaeSMatthew G Knepley ierr = PetscSectionSetUp(subCoordSection);CHKERRQ(ierr); 3211e6ccafaeSMatthew G Knepley ierr = PetscSectionGetStorageSize(subCoordSection, &coordSize);CHKERRQ(ierr); 32128b9ced59SLisandro Dalcin ierr = VecCreate(PETSC_COMM_SELF, &subCoordinates);CHKERRQ(ierr); 321324640c55SToby Isaac ierr = PetscObjectGetName((PetscObject)coordinates,&name);CHKERRQ(ierr); 321424640c55SToby Isaac ierr = PetscObjectSetName((PetscObject)subCoordinates,name);CHKERRQ(ierr); 3215e6ccafaeSMatthew G Knepley ierr = VecSetSizes(subCoordinates, coordSize, PETSC_DETERMINE);CHKERRQ(ierr); 3216c0e8cf5fSMatthew G. Knepley ierr = VecSetBlockSize(subCoordinates, cdim);CHKERRQ(ierr); 32172eb5907fSJed Brown ierr = VecSetType(subCoordinates,VECSTANDARD);CHKERRQ(ierr); 3218e6ccafaeSMatthew G Knepley ierr = VecGetArray(coordinates, &coords);CHKERRQ(ierr); 3219e6ccafaeSMatthew G Knepley ierr = VecGetArray(subCoordinates, &subCoords);CHKERRQ(ierr); 3220e6ccafaeSMatthew G Knepley for (v = 0; v < numSubPoints[0]; ++v) { 3221e6ccafaeSMatthew G Knepley const PetscInt vertex = subpoints[0][v]; 3222e6ccafaeSMatthew G Knepley const PetscInt subvertex = firstSubPoint[0]+v; 3223e6ccafaeSMatthew G Knepley PetscInt dof, off, sdof, soff, d; 3224e6ccafaeSMatthew G Knepley 3225e6ccafaeSMatthew G Knepley ierr = PetscSectionGetDof(coordSection, vertex, &dof);CHKERRQ(ierr); 3226e6ccafaeSMatthew G Knepley ierr = PetscSectionGetOffset(coordSection, vertex, &off);CHKERRQ(ierr); 3227e6ccafaeSMatthew G Knepley ierr = PetscSectionGetDof(subCoordSection, subvertex, &sdof);CHKERRQ(ierr); 3228e6ccafaeSMatthew G Knepley ierr = PetscSectionGetOffset(subCoordSection, subvertex, &soff);CHKERRQ(ierr); 3229e6ccafaeSMatthew G Knepley if (dof != sdof) SETERRQ4(comm, PETSC_ERR_PLIB, "Coordinate dimension %d on subvertex %d, vertex %d should be %d", sdof, subvertex, vertex, dof); 3230efa14ee0SMatthew G Knepley for (d = 0; d < dof; ++d) subCoords[soff+d] = coords[off+d]; 3231e6ccafaeSMatthew G Knepley } 3232e6ccafaeSMatthew G Knepley ierr = VecRestoreArray(coordinates, &coords);CHKERRQ(ierr); 3233e6ccafaeSMatthew G Knepley ierr = VecRestoreArray(subCoordinates, &subCoords);CHKERRQ(ierr); 3234e6ccafaeSMatthew G Knepley ierr = DMSetCoordinatesLocal(subdm, subCoordinates);CHKERRQ(ierr); 3235e6ccafaeSMatthew G Knepley ierr = VecDestroy(&subCoordinates);CHKERRQ(ierr); 3236e6ccafaeSMatthew G Knepley } 32373982b651SMatthew G. Knepley /* Build SF: We need this complexity because subpoints might not be selected on the owning process */ 32383982b651SMatthew G. Knepley { 32393982b651SMatthew G. Knepley PetscSF sfPoint, sfPointSub; 32403982b651SMatthew G. Knepley IS subpIS; 32413982b651SMatthew G. Knepley const PetscSFNode *remotePoints; 32423982b651SMatthew G. Knepley PetscSFNode *sremotePoints, *newLocalPoints, *newOwners; 32433982b651SMatthew G. Knepley const PetscInt *localPoints, *subpoints; 32443982b651SMatthew G. Knepley PetscInt *slocalPoints; 32453982b651SMatthew G. Knepley PetscInt numRoots, numLeaves, numSubpoints = 0, numSubroots, numSubleaves = 0, l, sl, ll, pStart, pEnd, p; 32463982b651SMatthew G. Knepley PetscMPIInt rank; 32473982b651SMatthew G. Knepley 3248ffc4695bSBarry Smith ierr = MPI_Comm_rank(PetscObjectComm((PetscObject) dm), &rank);CHKERRMPI(ierr); 32493982b651SMatthew G. Knepley ierr = DMGetPointSF(dm, &sfPoint);CHKERRQ(ierr); 32503982b651SMatthew G. Knepley ierr = DMGetPointSF(subdm, &sfPointSub);CHKERRQ(ierr); 32513982b651SMatthew G. Knepley ierr = DMPlexGetChart(dm, &pStart, &pEnd);CHKERRQ(ierr); 32523982b651SMatthew G. Knepley ierr = DMPlexGetChart(subdm, NULL, &numSubroots);CHKERRQ(ierr); 325397d8846cSMatthew Knepley ierr = DMPlexGetSubpointIS(subdm, &subpIS);CHKERRQ(ierr); 32543982b651SMatthew G. Knepley if (subpIS) { 32553982b651SMatthew G. Knepley ierr = ISGetIndices(subpIS, &subpoints);CHKERRQ(ierr); 32563982b651SMatthew G. Knepley ierr = ISGetLocalSize(subpIS, &numSubpoints);CHKERRQ(ierr); 32573982b651SMatthew G. Knepley } 32583982b651SMatthew G. Knepley ierr = PetscSFGetGraph(sfPoint, &numRoots, &numLeaves, &localPoints, &remotePoints);CHKERRQ(ierr); 32593982b651SMatthew G. Knepley if (numRoots >= 0) { 32603982b651SMatthew G. Knepley ierr = PetscMalloc2(pEnd-pStart,&newLocalPoints,numRoots,&newOwners);CHKERRQ(ierr); 32613982b651SMatthew G. Knepley for (p = 0; p < pEnd-pStart; ++p) { 32623982b651SMatthew G. Knepley newLocalPoints[p].rank = -2; 32633982b651SMatthew G. Knepley newLocalPoints[p].index = -2; 32643982b651SMatthew G. Knepley } 32653982b651SMatthew G. Knepley /* Set subleaves */ 32663982b651SMatthew G. Knepley for (l = 0; l < numLeaves; ++l) { 32673982b651SMatthew G. Knepley const PetscInt point = localPoints[l]; 32683982b651SMatthew G. Knepley const PetscInt subpoint = DMPlexFilterPoint_Internal(point, 0, numSubpoints, subpoints); 32693982b651SMatthew G. Knepley 32703982b651SMatthew G. Knepley if (subpoint < 0) continue; 32713982b651SMatthew G. Knepley newLocalPoints[point-pStart].rank = rank; 32723982b651SMatthew G. Knepley newLocalPoints[point-pStart].index = subpoint; 32733982b651SMatthew G. Knepley ++numSubleaves; 32743982b651SMatthew G. Knepley } 32753982b651SMatthew G. Knepley /* Must put in owned subpoints */ 32763982b651SMatthew G. Knepley for (p = pStart; p < pEnd; ++p) { 32773982b651SMatthew G. Knepley const PetscInt subpoint = DMPlexFilterPoint_Internal(p, 0, numSubpoints, subpoints); 32783982b651SMatthew G. Knepley 32793982b651SMatthew G. Knepley if (subpoint < 0) { 32803982b651SMatthew G. Knepley newOwners[p-pStart].rank = -3; 32813982b651SMatthew G. Knepley newOwners[p-pStart].index = -3; 32823982b651SMatthew G. Knepley } else { 32833982b651SMatthew G. Knepley newOwners[p-pStart].rank = rank; 32843982b651SMatthew G. Knepley newOwners[p-pStart].index = subpoint; 32853982b651SMatthew G. Knepley } 32863982b651SMatthew G. Knepley } 32873982b651SMatthew G. Knepley ierr = PetscSFReduceBegin(sfPoint, MPIU_2INT, newLocalPoints, newOwners, MPI_MAXLOC);CHKERRQ(ierr); 32883982b651SMatthew G. Knepley ierr = PetscSFReduceEnd(sfPoint, MPIU_2INT, newLocalPoints, newOwners, MPI_MAXLOC);CHKERRQ(ierr); 3289ad227feaSJunchao Zhang ierr = PetscSFBcastBegin(sfPoint, MPIU_2INT, newOwners, newLocalPoints,MPI_REPLACE);CHKERRQ(ierr); 3290ad227feaSJunchao Zhang ierr = PetscSFBcastEnd(sfPoint, MPIU_2INT, newOwners, newLocalPoints,MPI_REPLACE);CHKERRQ(ierr); 32913982b651SMatthew G. Knepley ierr = PetscMalloc1(numSubleaves, &slocalPoints);CHKERRQ(ierr); 32923982b651SMatthew G. Knepley ierr = PetscMalloc1(numSubleaves, &sremotePoints);CHKERRQ(ierr); 32933982b651SMatthew G. Knepley for (l = 0, sl = 0, ll = 0; l < numLeaves; ++l) { 32943982b651SMatthew G. Knepley const PetscInt point = localPoints[l]; 32953982b651SMatthew G. Knepley const PetscInt subpoint = DMPlexFilterPoint_Internal(point, 0, numSubpoints, subpoints); 32963982b651SMatthew G. Knepley 32973982b651SMatthew G. Knepley if (subpoint < 0) continue; 32983982b651SMatthew G. Knepley if (newLocalPoints[point].rank == rank) {++ll; continue;} 32993982b651SMatthew G. Knepley slocalPoints[sl] = subpoint; 33003982b651SMatthew G. Knepley sremotePoints[sl].rank = newLocalPoints[point].rank; 33013982b651SMatthew G. Knepley sremotePoints[sl].index = newLocalPoints[point].index; 33023982b651SMatthew G. Knepley if (sremotePoints[sl].rank < 0) SETERRQ1(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid remote rank for local point %d", point); 33033982b651SMatthew G. Knepley if (sremotePoints[sl].index < 0) SETERRQ1(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid remote subpoint for local point %d", point); 33043982b651SMatthew G. Knepley ++sl; 33053982b651SMatthew G. Knepley } 33063982b651SMatthew G. Knepley if (sl + ll != numSubleaves) SETERRQ3(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Mismatch in number of subleaves %d + %d != %d", sl, ll, numSubleaves); 33073982b651SMatthew G. Knepley ierr = PetscFree2(newLocalPoints,newOwners);CHKERRQ(ierr); 33083982b651SMatthew G. Knepley ierr = PetscSFSetGraph(sfPointSub, numSubroots, sl, slocalPoints, PETSC_OWN_POINTER, sremotePoints, PETSC_OWN_POINTER);CHKERRQ(ierr); 33093982b651SMatthew G. Knepley } 33103982b651SMatthew G. Knepley if (subpIS) { 33113982b651SMatthew G. Knepley ierr = ISRestoreIndices(subpIS, &subpoints);CHKERRQ(ierr); 33123982b651SMatthew G. Knepley } 33133982b651SMatthew G. Knepley } 3314efa14ee0SMatthew G Knepley /* Cleanup */ 3315e6ccafaeSMatthew G Knepley for (d = 0; d <= dim; ++d) { 33160ae02aa4SMatthew G. Knepley if (subpointIS[d]) {ierr = ISRestoreIndices(subpointIS[d], &subpoints[d]);CHKERRQ(ierr);} 3317e6ccafaeSMatthew G Knepley ierr = ISDestroy(&subpointIS[d]);CHKERRQ(ierr); 3318e6ccafaeSMatthew G Knepley } 3319efa14ee0SMatthew G Knepley ierr = PetscFree4(numSubPoints,firstSubPoint,subpointIS,subpoints);CHKERRQ(ierr); 3320e6ccafaeSMatthew G Knepley PetscFunctionReturn(0); 3321e6ccafaeSMatthew G Knepley } 3322e6ccafaeSMatthew G Knepley 3323158acfadSMatthew G. Knepley static PetscErrorCode DMPlexCreateSubmesh_Interpolated(DM dm, DMLabel vertexLabel, PetscInt value, PetscBool markedFaces, DM subdm) 33243982b651SMatthew G. Knepley { 33253982b651SMatthew G. Knepley PetscErrorCode ierr; 33263982b651SMatthew G. Knepley 33273982b651SMatthew G. Knepley PetscFunctionBegin; 3328158acfadSMatthew G. Knepley ierr = DMPlexCreateSubmeshGeneric_Interpolated(dm, vertexLabel, value, markedFaces, PETSC_FALSE, 1, subdm);CHKERRQ(ierr); 33293982b651SMatthew G. Knepley PetscFunctionReturn(0); 33303982b651SMatthew G. Knepley } 33313982b651SMatthew G. Knepley 3332d0fa310fSMatthew G. Knepley /*@ 3333e6ccafaeSMatthew G Knepley DMPlexCreateSubmesh - Extract a hypersurface from the mesh using vertices defined by a label 3334e6ccafaeSMatthew G Knepley 3335e6ccafaeSMatthew G Knepley Input Parameters: 3336e6ccafaeSMatthew G Knepley + dm - The original mesh 3337158acfadSMatthew G. Knepley . vertexLabel - The DMLabel marking points contained in the surface 3338158acfadSMatthew G. Knepley . value - The label value to use 3339158acfadSMatthew G. Knepley - markedFaces - PETSC_TRUE if surface faces are marked in addition to vertices, PETSC_FALSE if only vertices are marked 3340e6ccafaeSMatthew G Knepley 3341e6ccafaeSMatthew G Knepley Output Parameter: 3342e6ccafaeSMatthew G Knepley . subdm - The surface mesh 3343e6ccafaeSMatthew G Knepley 3344e6ccafaeSMatthew G Knepley Note: This function produces a DMLabel mapping original points in the submesh to their depth. This can be obtained using DMPlexGetSubpointMap(). 3345e6ccafaeSMatthew G Knepley 3346e6ccafaeSMatthew G Knepley Level: developer 3347e6ccafaeSMatthew G Knepley 3348c58f1c22SToby Isaac .seealso: DMPlexGetSubpointMap(), DMGetLabel(), DMLabelSetValue() 3349830e53efSMatthew G. Knepley @*/ 3350158acfadSMatthew G. Knepley PetscErrorCode DMPlexCreateSubmesh(DM dm, DMLabel vertexLabel, PetscInt value, PetscBool markedFaces, DM *subdm) 3351e6ccafaeSMatthew G Knepley { 3352827c4036SVaclav Hapla DMPlexInterpolatedFlag interpolated; 3353827c4036SVaclav Hapla PetscInt dim, cdim; 3354e6ccafaeSMatthew G Knepley PetscErrorCode ierr; 3355e6ccafaeSMatthew G Knepley 3356e6ccafaeSMatthew G Knepley PetscFunctionBegin; 3357e6ccafaeSMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 3358064a246eSJacob Faibussowitsch PetscValidPointer(subdm, 5); 3359c73cfb54SMatthew G. Knepley ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr); 336082f516ccSBarry Smith ierr = DMCreate(PetscObjectComm((PetscObject)dm), subdm);CHKERRQ(ierr); 3361e6ccafaeSMatthew G Knepley ierr = DMSetType(*subdm, DMPLEX);CHKERRQ(ierr); 3362c73cfb54SMatthew G. Knepley ierr = DMSetDimension(*subdm, dim-1);CHKERRQ(ierr); 3363dd2763adSMatthew G. Knepley ierr = DMGetCoordinateDim(dm, &cdim);CHKERRQ(ierr); 3364dd2763adSMatthew G. Knepley ierr = DMSetCoordinateDim(*subdm, cdim);CHKERRQ(ierr); 3365827c4036SVaclav Hapla ierr = DMPlexIsInterpolated(dm, &interpolated);CHKERRQ(ierr); 3366827c4036SVaclav Hapla if (interpolated == DMPLEX_INTERPOLATED_PARTIAL) SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Not for partially interpolated meshes"); 3367827c4036SVaclav Hapla if (interpolated) { 3368158acfadSMatthew G. Knepley ierr = DMPlexCreateSubmesh_Interpolated(dm, vertexLabel, value, markedFaces, *subdm);CHKERRQ(ierr); 3369e6ccafaeSMatthew G Knepley } else { 3370830e53efSMatthew G. Knepley ierr = DMPlexCreateSubmesh_Uninterpolated(dm, vertexLabel, value, *subdm);CHKERRQ(ierr); 3371e6ccafaeSMatthew G Knepley } 3372e6ccafaeSMatthew G Knepley PetscFunctionReturn(0); 3373e6ccafaeSMatthew G Knepley } 3374e6ccafaeSMatthew G Knepley 337527c04023SMatthew G. Knepley static PetscErrorCode DMPlexCreateCohesiveSubmesh_Uninterpolated(DM dm, PetscBool hasLagrange, const char label[], PetscInt value, DM subdm) 3376766ab985SMatthew G. Knepley { 3377766ab985SMatthew G. Knepley MPI_Comm comm; 3378766ab985SMatthew G. Knepley DMLabel subpointMap; 3379766ab985SMatthew G. Knepley IS subvertexIS; 3380766ab985SMatthew G. Knepley const PetscInt *subVertices; 3381fed694aaSMatthew G. Knepley PetscInt numSubVertices, firstSubVertex, numSubCells, *subCells = NULL; 3382766ab985SMatthew G. Knepley PetscInt *subface, maxConeSize, numSubFaces, firstSubFace, newFacePoint, nFV; 3383412e9a14SMatthew G. Knepley PetscInt c, f; 3384766ab985SMatthew G. Knepley PetscErrorCode ierr; 3385766ab985SMatthew G. Knepley 3386766ab985SMatthew G. Knepley PetscFunctionBegin; 3387766ab985SMatthew G. Knepley ierr = PetscObjectGetComm((PetscObject)dm, &comm);CHKERRQ(ierr); 3388766ab985SMatthew G. Knepley /* Create subpointMap which marks the submesh */ 3389d67d17b1SMatthew G. Knepley ierr = DMLabelCreate(PETSC_COMM_SELF, "subpoint_map", &subpointMap);CHKERRQ(ierr); 3390766ab985SMatthew G. Knepley ierr = DMPlexSetSubpointMap(subdm, subpointMap);CHKERRQ(ierr); 3391766ab985SMatthew G. Knepley ierr = DMLabelDestroy(&subpointMap);CHKERRQ(ierr); 339227c04023SMatthew G. Knepley ierr = DMPlexMarkCohesiveSubmesh_Uninterpolated(dm, hasLagrange, label, value, subpointMap, &numSubFaces, &nFV, &subCells, subdm);CHKERRQ(ierr); 3393766ab985SMatthew G. Knepley /* Setup chart */ 3394766ab985SMatthew G. Knepley ierr = DMLabelGetStratumSize(subpointMap, 0, &numSubVertices);CHKERRQ(ierr); 3395766ab985SMatthew G. Knepley ierr = DMLabelGetStratumSize(subpointMap, 2, &numSubCells);CHKERRQ(ierr); 3396766ab985SMatthew G. Knepley ierr = DMPlexSetChart(subdm, 0, numSubCells+numSubFaces+numSubVertices);CHKERRQ(ierr); 3397766ab985SMatthew G. Knepley ierr = DMPlexSetVTKCellHeight(subdm, 1);CHKERRQ(ierr); 3398766ab985SMatthew G. Knepley /* Set cone sizes */ 3399766ab985SMatthew G. Knepley firstSubVertex = numSubCells; 3400766ab985SMatthew G. Knepley firstSubFace = numSubCells+numSubVertices; 3401766ab985SMatthew G. Knepley newFacePoint = firstSubFace; 3402766ab985SMatthew G. Knepley ierr = DMLabelGetStratumIS(subpointMap, 0, &subvertexIS);CHKERRQ(ierr); 3403766ab985SMatthew G. Knepley if (subvertexIS) {ierr = ISGetIndices(subvertexIS, &subVertices);CHKERRQ(ierr);} 3404766ab985SMatthew G. Knepley for (c = 0; c < numSubCells; ++c) { 3405766ab985SMatthew G. Knepley ierr = DMPlexSetConeSize(subdm, c, 1);CHKERRQ(ierr); 3406766ab985SMatthew G. Knepley } 3407766ab985SMatthew G. Knepley for (f = firstSubFace; f < firstSubFace+numSubFaces; ++f) { 3408766ab985SMatthew G. Knepley ierr = DMPlexSetConeSize(subdm, f, nFV);CHKERRQ(ierr); 3409766ab985SMatthew G. Knepley } 3410766ab985SMatthew G. Knepley ierr = DMSetUp(subdm);CHKERRQ(ierr); 3411766ab985SMatthew G. Knepley /* Create face cones */ 3412766ab985SMatthew G. Knepley ierr = DMPlexGetMaxSizes(dm, &maxConeSize, NULL);CHKERRQ(ierr); 341369291d52SBarry Smith ierr = DMGetWorkArray(subdm, maxConeSize, MPIU_INT, (void**) &subface);CHKERRQ(ierr); 3414766ab985SMatthew G. Knepley for (c = 0; c < numSubCells; ++c) { 3415766ab985SMatthew G. Knepley const PetscInt cell = subCells[c]; 3416766ab985SMatthew G. Knepley const PetscInt subcell = c; 341787feddfdSMatthew G. Knepley const PetscInt *cone, *cells; 3418412e9a14SMatthew G. Knepley PetscBool isHybrid; 341987feddfdSMatthew G. Knepley PetscInt numCells, subVertex, p, v; 3420766ab985SMatthew G. Knepley 3421412e9a14SMatthew G. Knepley ierr = DMPlexCellIsHybrid_Internal(dm, cell, &isHybrid);CHKERRQ(ierr); 3422412e9a14SMatthew G. Knepley if (!isHybrid) continue; 342387feddfdSMatthew G. Knepley ierr = DMPlexGetCone(dm, cell, &cone);CHKERRQ(ierr); 342487feddfdSMatthew G. Knepley for (v = 0; v < nFV; ++v) { 342587feddfdSMatthew G. Knepley ierr = PetscFindInt(cone[v], numSubVertices, subVertices, &subVertex);CHKERRQ(ierr); 342687feddfdSMatthew G. Knepley subface[v] = firstSubVertex+subVertex; 342787feddfdSMatthew G. Knepley } 342887feddfdSMatthew G. Knepley ierr = DMPlexSetCone(subdm, newFacePoint, subface);CHKERRQ(ierr); 342987feddfdSMatthew G. Knepley ierr = DMPlexSetCone(subdm, subcell, &newFacePoint);CHKERRQ(ierr); 343087feddfdSMatthew G. Knepley ierr = DMPlexGetJoin(dm, nFV, cone, &numCells, &cells);CHKERRQ(ierr); 343127234c99SMatthew G. Knepley /* Not true in parallel 343227234c99SMatthew G. Knepley if (numCells != 2) SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Cohesive cells should separate two cells"); */ 343387feddfdSMatthew G. Knepley for (p = 0; p < numCells; ++p) { 343487feddfdSMatthew G. Knepley PetscInt negsubcell; 3435412e9a14SMatthew G. Knepley PetscBool isHybrid; 3436766ab985SMatthew G. Knepley 3437412e9a14SMatthew G. Knepley ierr = DMPlexCellIsHybrid_Internal(dm, cells[p], &isHybrid);CHKERRQ(ierr); 3438412e9a14SMatthew G. Knepley if (isHybrid) continue; 343987feddfdSMatthew G. Knepley /* I know this is a crap search */ 344087feddfdSMatthew G. Knepley for (negsubcell = 0; negsubcell < numSubCells; ++negsubcell) { 344187feddfdSMatthew G. Knepley if (subCells[negsubcell] == cells[p]) break; 3442766ab985SMatthew G. Knepley } 344387feddfdSMatthew G. Knepley if (negsubcell == numSubCells) SETERRQ1(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Could not find negative face neighbor for cohesive cell %d", cell); 344487feddfdSMatthew G. Knepley ierr = DMPlexSetCone(subdm, negsubcell, &newFacePoint);CHKERRQ(ierr); 3445766ab985SMatthew G. Knepley } 344687feddfdSMatthew G. Knepley ierr = DMPlexRestoreJoin(dm, nFV, cone, &numCells, &cells);CHKERRQ(ierr); 344787feddfdSMatthew G. Knepley ++newFacePoint; 3448766ab985SMatthew G. Knepley } 344969291d52SBarry Smith ierr = DMRestoreWorkArray(subdm, maxConeSize, MPIU_INT, (void**) &subface);CHKERRQ(ierr); 3450766ab985SMatthew G. Knepley ierr = DMPlexSymmetrize(subdm);CHKERRQ(ierr); 3451766ab985SMatthew G. Knepley ierr = DMPlexStratify(subdm);CHKERRQ(ierr); 3452766ab985SMatthew G. Knepley /* Build coordinates */ 3453766ab985SMatthew G. Knepley { 3454766ab985SMatthew G. Knepley PetscSection coordSection, subCoordSection; 3455766ab985SMatthew G. Knepley Vec coordinates, subCoordinates; 3456766ab985SMatthew G. Knepley PetscScalar *coords, *subCoords; 3457c0e8cf5fSMatthew G. Knepley PetscInt cdim, numComp, coordSize, v; 345824640c55SToby Isaac const char *name; 3459766ab985SMatthew G. Knepley 3460c0e8cf5fSMatthew G. Knepley ierr = DMGetCoordinateDim(dm, &cdim);CHKERRQ(ierr); 346169d8a9ceSMatthew G. Knepley ierr = DMGetCoordinateSection(dm, &coordSection);CHKERRQ(ierr); 3462766ab985SMatthew G. Knepley ierr = DMGetCoordinatesLocal(dm, &coordinates);CHKERRQ(ierr); 346369d8a9ceSMatthew G. Knepley ierr = DMGetCoordinateSection(subdm, &subCoordSection);CHKERRQ(ierr); 3464285d324eSMatthew G. Knepley ierr = PetscSectionSetNumFields(subCoordSection, 1);CHKERRQ(ierr); 3465285d324eSMatthew G. Knepley ierr = PetscSectionGetFieldComponents(coordSection, 0, &numComp);CHKERRQ(ierr); 3466285d324eSMatthew G. Knepley ierr = PetscSectionSetFieldComponents(subCoordSection, 0, numComp);CHKERRQ(ierr); 3467766ab985SMatthew G. Knepley ierr = PetscSectionSetChart(subCoordSection, firstSubVertex, firstSubVertex+numSubVertices);CHKERRQ(ierr); 3468766ab985SMatthew G. Knepley for (v = 0; v < numSubVertices; ++v) { 3469766ab985SMatthew G. Knepley const PetscInt vertex = subVertices[v]; 3470766ab985SMatthew G. Knepley const PetscInt subvertex = firstSubVertex+v; 3471766ab985SMatthew G. Knepley PetscInt dof; 3472766ab985SMatthew G. Knepley 3473766ab985SMatthew G. Knepley ierr = PetscSectionGetDof(coordSection, vertex, &dof);CHKERRQ(ierr); 3474766ab985SMatthew G. Knepley ierr = PetscSectionSetDof(subCoordSection, subvertex, dof);CHKERRQ(ierr); 3475285d324eSMatthew G. Knepley ierr = PetscSectionSetFieldDof(subCoordSection, subvertex, 0, dof);CHKERRQ(ierr); 3476766ab985SMatthew G. Knepley } 3477766ab985SMatthew G. Knepley ierr = PetscSectionSetUp(subCoordSection);CHKERRQ(ierr); 3478766ab985SMatthew G. Knepley ierr = PetscSectionGetStorageSize(subCoordSection, &coordSize);CHKERRQ(ierr); 34798b9ced59SLisandro Dalcin ierr = VecCreate(PETSC_COMM_SELF, &subCoordinates);CHKERRQ(ierr); 348024640c55SToby Isaac ierr = PetscObjectGetName((PetscObject)coordinates,&name);CHKERRQ(ierr); 348124640c55SToby Isaac ierr = PetscObjectSetName((PetscObject)subCoordinates,name);CHKERRQ(ierr); 3482766ab985SMatthew G. Knepley ierr = VecSetSizes(subCoordinates, coordSize, PETSC_DETERMINE);CHKERRQ(ierr); 3483c0e8cf5fSMatthew G. Knepley ierr = VecSetBlockSize(subCoordinates, cdim);CHKERRQ(ierr); 34842eb5907fSJed Brown ierr = VecSetType(subCoordinates,VECSTANDARD);CHKERRQ(ierr); 3485766ab985SMatthew G. Knepley ierr = VecGetArray(coordinates, &coords);CHKERRQ(ierr); 3486766ab985SMatthew G. Knepley ierr = VecGetArray(subCoordinates, &subCoords);CHKERRQ(ierr); 3487766ab985SMatthew G. Knepley for (v = 0; v < numSubVertices; ++v) { 3488766ab985SMatthew G. Knepley const PetscInt vertex = subVertices[v]; 3489766ab985SMatthew G. Knepley const PetscInt subvertex = firstSubVertex+v; 3490766ab985SMatthew G. Knepley PetscInt dof, off, sdof, soff, d; 3491766ab985SMatthew G. Knepley 3492766ab985SMatthew G. Knepley ierr = PetscSectionGetDof(coordSection, vertex, &dof);CHKERRQ(ierr); 3493766ab985SMatthew G. Knepley ierr = PetscSectionGetOffset(coordSection, vertex, &off);CHKERRQ(ierr); 3494766ab985SMatthew G. Knepley ierr = PetscSectionGetDof(subCoordSection, subvertex, &sdof);CHKERRQ(ierr); 3495766ab985SMatthew G. Knepley ierr = PetscSectionGetOffset(subCoordSection, subvertex, &soff);CHKERRQ(ierr); 3496766ab985SMatthew G. Knepley if (dof != sdof) SETERRQ4(comm, PETSC_ERR_PLIB, "Coordinate dimension %d on subvertex %d, vertex %d should be %d", sdof, subvertex, vertex, dof); 3497766ab985SMatthew G. Knepley for (d = 0; d < dof; ++d) subCoords[soff+d] = coords[off+d]; 3498766ab985SMatthew G. Knepley } 3499766ab985SMatthew G. Knepley ierr = VecRestoreArray(coordinates, &coords);CHKERRQ(ierr); 3500766ab985SMatthew G. Knepley ierr = VecRestoreArray(subCoordinates, &subCoords);CHKERRQ(ierr); 3501766ab985SMatthew G. Knepley ierr = DMSetCoordinatesLocal(subdm, subCoordinates);CHKERRQ(ierr); 3502766ab985SMatthew G. Knepley ierr = VecDestroy(&subCoordinates);CHKERRQ(ierr); 3503766ab985SMatthew G. Knepley } 3504aca35d17SMatthew G. Knepley /* Build SF */ 3505aca35d17SMatthew G. Knepley CHKMEMQ; 3506aca35d17SMatthew G. Knepley { 3507aca35d17SMatthew G. Knepley PetscSF sfPoint, sfPointSub; 3508aca35d17SMatthew G. Knepley const PetscSFNode *remotePoints; 3509bdcf2095SMatthew G. Knepley PetscSFNode *sremotePoints, *newLocalPoints, *newOwners; 3510aca35d17SMatthew G. Knepley const PetscInt *localPoints; 3511bdcf2095SMatthew G. Knepley PetscInt *slocalPoints; 351249c26ae4SMatthew G. Knepley PetscInt numRoots, numLeaves, numSubRoots = numSubCells+numSubFaces+numSubVertices, numSubLeaves = 0, l, sl, ll, pStart, pEnd, p, vStart, vEnd; 3513bdcf2095SMatthew G. Knepley PetscMPIInt rank; 3514aca35d17SMatthew G. Knepley 3515ffc4695bSBarry Smith ierr = MPI_Comm_rank(PetscObjectComm((PetscObject) dm), &rank);CHKERRMPI(ierr); 3516aca35d17SMatthew G. Knepley ierr = DMGetPointSF(dm, &sfPoint);CHKERRQ(ierr); 3517aca35d17SMatthew G. Knepley ierr = DMGetPointSF(subdm, &sfPointSub);CHKERRQ(ierr); 3518aca35d17SMatthew G. Knepley ierr = DMPlexGetChart(dm, &pStart, &pEnd);CHKERRQ(ierr); 3519aca35d17SMatthew G. Knepley ierr = DMPlexGetDepthStratum(dm, 0, &vStart, &vEnd);CHKERRQ(ierr); 3520aca35d17SMatthew G. Knepley ierr = PetscSFGetGraph(sfPoint, &numRoots, &numLeaves, &localPoints, &remotePoints);CHKERRQ(ierr); 3521aca35d17SMatthew G. Knepley if (numRoots >= 0) { 3522aca35d17SMatthew G. Knepley /* Only vertices should be shared */ 3523dcca6d9dSJed Brown ierr = PetscMalloc2(pEnd-pStart,&newLocalPoints,numRoots,&newOwners);CHKERRQ(ierr); 3524bdcf2095SMatthew G. Knepley for (p = 0; p < pEnd-pStart; ++p) { 3525bdcf2095SMatthew G. Knepley newLocalPoints[p].rank = -2; 3526bdcf2095SMatthew G. Knepley newLocalPoints[p].index = -2; 3527bdcf2095SMatthew G. Knepley } 35289e0823b2SMatthew G. Knepley /* Set subleaves */ 3529aca35d17SMatthew G. Knepley for (l = 0; l < numLeaves; ++l) { 3530aca35d17SMatthew G. Knepley const PetscInt point = localPoints[l]; 3531bdcf2095SMatthew G. Knepley const PetscInt subPoint = DMPlexFilterPoint_Internal(point, firstSubVertex, numSubVertices, subVertices); 3532aca35d17SMatthew G. Knepley 3533aca35d17SMatthew G. Knepley if ((point < vStart) && (point >= vEnd)) SETERRQ1(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Should not be mapping anything but vertices, %d", point); 3534bdcf2095SMatthew G. Knepley if (subPoint < 0) continue; 3535bdcf2095SMatthew G. Knepley newLocalPoints[point-pStart].rank = rank; 3536bdcf2095SMatthew G. Knepley newLocalPoints[point-pStart].index = subPoint; 3537bdcf2095SMatthew G. Knepley ++numSubLeaves; 3538aca35d17SMatthew G. Knepley } 35399e0823b2SMatthew G. Knepley /* Must put in owned subpoints */ 35409e0823b2SMatthew G. Knepley for (p = pStart; p < pEnd; ++p) { 35419e0823b2SMatthew G. Knepley const PetscInt subPoint = DMPlexFilterPoint_Internal(p, firstSubVertex, numSubVertices, subVertices); 35429e0823b2SMatthew G. Knepley 35439e0823b2SMatthew G. Knepley if (subPoint < 0) { 35449e0823b2SMatthew G. Knepley newOwners[p-pStart].rank = -3; 35459e0823b2SMatthew G. Knepley newOwners[p-pStart].index = -3; 35469e0823b2SMatthew G. Knepley } else { 35479e0823b2SMatthew G. Knepley newOwners[p-pStart].rank = rank; 35489e0823b2SMatthew G. Knepley newOwners[p-pStart].index = subPoint; 35499e0823b2SMatthew G. Knepley } 3550bdcf2095SMatthew G. Knepley } 3551bdcf2095SMatthew G. Knepley ierr = PetscSFReduceBegin(sfPoint, MPIU_2INT, newLocalPoints, newOwners, MPI_MAXLOC);CHKERRQ(ierr); 3552bdcf2095SMatthew G. Knepley ierr = PetscSFReduceEnd(sfPoint, MPIU_2INT, newLocalPoints, newOwners, MPI_MAXLOC);CHKERRQ(ierr); 3553ad227feaSJunchao Zhang ierr = PetscSFBcastBegin(sfPoint, MPIU_2INT, newOwners, newLocalPoints,MPI_REPLACE);CHKERRQ(ierr); 3554ad227feaSJunchao Zhang ierr = PetscSFBcastEnd(sfPoint, MPIU_2INT, newOwners, newLocalPoints,MPI_REPLACE);CHKERRQ(ierr); 3555785e854fSJed Brown ierr = PetscMalloc1(numSubLeaves, &slocalPoints);CHKERRQ(ierr); 3556785e854fSJed Brown ierr = PetscMalloc1(numSubLeaves, &sremotePoints);CHKERRQ(ierr); 355749c26ae4SMatthew G. Knepley for (l = 0, sl = 0, ll = 0; l < numLeaves; ++l) { 3558bdcf2095SMatthew G. Knepley const PetscInt point = localPoints[l]; 3559bdcf2095SMatthew G. Knepley const PetscInt subPoint = DMPlexFilterPoint_Internal(point, firstSubVertex, numSubVertices, subVertices); 3560aca35d17SMatthew G. Knepley 3561aca35d17SMatthew G. Knepley if (subPoint < 0) continue; 356249c26ae4SMatthew G. Knepley if (newLocalPoints[point].rank == rank) {++ll; continue;} 3563aca35d17SMatthew G. Knepley slocalPoints[sl] = subPoint; 3564bdcf2095SMatthew G. Knepley sremotePoints[sl].rank = newLocalPoints[point].rank; 3565bdcf2095SMatthew G. Knepley sremotePoints[sl].index = newLocalPoints[point].index; 3566bdcf2095SMatthew G. Knepley if (sremotePoints[sl].rank < 0) SETERRQ1(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid remote rank for local point %d", point); 3567bdcf2095SMatthew G. Knepley if (sremotePoints[sl].index < 0) SETERRQ1(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid remote subpoint for local point %d", point); 3568aca35d17SMatthew G. Knepley ++sl; 3569aca35d17SMatthew G. Knepley } 3570bdcf2095SMatthew G. Knepley ierr = PetscFree2(newLocalPoints,newOwners);CHKERRQ(ierr); 357149c26ae4SMatthew G. Knepley if (sl + ll != numSubLeaves) SETERRQ3(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Mismatch in number of subleaves %d + %d != %d", sl, ll, numSubLeaves); 357249c26ae4SMatthew G. Knepley ierr = PetscSFSetGraph(sfPointSub, numSubRoots, sl, slocalPoints, PETSC_OWN_POINTER, sremotePoints, PETSC_OWN_POINTER);CHKERRQ(ierr); 3573aca35d17SMatthew G. Knepley } 3574aca35d17SMatthew G. Knepley } 3575aca35d17SMatthew G. Knepley CHKMEMQ; 3576766ab985SMatthew G. Knepley /* Cleanup */ 3577766ab985SMatthew G. Knepley if (subvertexIS) {ierr = ISRestoreIndices(subvertexIS, &subVertices);CHKERRQ(ierr);} 3578766ab985SMatthew G. Knepley ierr = ISDestroy(&subvertexIS);CHKERRQ(ierr); 3579766ab985SMatthew G. Knepley ierr = PetscFree(subCells);CHKERRQ(ierr); 3580766ab985SMatthew G. Knepley PetscFunctionReturn(0); 3581766ab985SMatthew G. Knepley } 3582766ab985SMatthew G. Knepley 35833982b651SMatthew G. Knepley static PetscErrorCode DMPlexCreateCohesiveSubmesh_Interpolated(DM dm, const char labelname[], PetscInt value, DM subdm) 3584766ab985SMatthew G. Knepley { 35853982b651SMatthew G. Knepley DMLabel label = NULL; 3586766ab985SMatthew G. Knepley PetscErrorCode ierr; 3587766ab985SMatthew G. Knepley 3588766ab985SMatthew G. Knepley PetscFunctionBegin; 3589c58f1c22SToby Isaac if (labelname) {ierr = DMGetLabel(dm, labelname, &label);CHKERRQ(ierr);} 3590158acfadSMatthew G. Knepley ierr = DMPlexCreateSubmeshGeneric_Interpolated(dm, label, value, PETSC_FALSE, PETSC_TRUE, 1, subdm);CHKERRQ(ierr); 3591766ab985SMatthew G. Knepley PetscFunctionReturn(0); 3592766ab985SMatthew G. Knepley } 3593766ab985SMatthew G. Knepley 3594c08575a3SMatthew G. Knepley /*@C 359527c04023SMatthew G. Knepley DMPlexCreateCohesiveSubmesh - Extract from a mesh with cohesive cells the hypersurface defined by one face of the cells. Optionally, a Label an be given to restrict the cells. 3596766ab985SMatthew G. Knepley 3597766ab985SMatthew G. Knepley Input Parameters: 3598766ab985SMatthew G. Knepley + dm - The original mesh 359927c04023SMatthew G. Knepley . hasLagrange - The mesh has Lagrange unknowns in the cohesive cells 36007afc1a8bSJed Brown . label - A label name, or NULL 360127c04023SMatthew G. Knepley - value - A label value 3602766ab985SMatthew G. Knepley 3603766ab985SMatthew G. Knepley Output Parameter: 3604766ab985SMatthew G. Knepley . subdm - The surface mesh 3605766ab985SMatthew G. Knepley 3606766ab985SMatthew G. Knepley Note: This function produces a DMLabel mapping original points in the submesh to their depth. This can be obtained using DMPlexGetSubpointMap(). 3607766ab985SMatthew G. Knepley 3608766ab985SMatthew G. Knepley Level: developer 3609766ab985SMatthew G. Knepley 3610766ab985SMatthew G. Knepley .seealso: DMPlexGetSubpointMap(), DMPlexCreateSubmesh() 3611c08575a3SMatthew G. Knepley @*/ 361227c04023SMatthew G. Knepley PetscErrorCode DMPlexCreateCohesiveSubmesh(DM dm, PetscBool hasLagrange, const char label[], PetscInt value, DM *subdm) 3613766ab985SMatthew G. Knepley { 3614c0e8cf5fSMatthew G. Knepley PetscInt dim, cdim, depth; 3615766ab985SMatthew G. Knepley PetscErrorCode ierr; 3616766ab985SMatthew G. Knepley 3617766ab985SMatthew G. Knepley PetscFunctionBegin; 3618766ab985SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 361927c04023SMatthew G. Knepley PetscValidPointer(subdm, 5); 3620c73cfb54SMatthew G. Knepley ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr); 3621766ab985SMatthew G. Knepley ierr = DMPlexGetDepth(dm, &depth);CHKERRQ(ierr); 3622766ab985SMatthew G. Knepley ierr = DMCreate(PetscObjectComm((PetscObject)dm), subdm);CHKERRQ(ierr); 3623766ab985SMatthew G. Knepley ierr = DMSetType(*subdm, DMPLEX);CHKERRQ(ierr); 3624c73cfb54SMatthew G. Knepley ierr = DMSetDimension(*subdm, dim-1);CHKERRQ(ierr); 3625c0e8cf5fSMatthew G. Knepley ierr = DMGetCoordinateDim(dm, &cdim);CHKERRQ(ierr); 3626c0e8cf5fSMatthew G. Knepley ierr = DMSetCoordinateDim(*subdm, cdim);CHKERRQ(ierr); 3627766ab985SMatthew G. Knepley if (depth == dim) { 3628b3154360SMatthew G. Knepley ierr = DMPlexCreateCohesiveSubmesh_Interpolated(dm, label, value, *subdm);CHKERRQ(ierr); 3629766ab985SMatthew G. Knepley } else { 363027c04023SMatthew G. Knepley ierr = DMPlexCreateCohesiveSubmesh_Uninterpolated(dm, hasLagrange, label, value, *subdm);CHKERRQ(ierr); 3631e6ccafaeSMatthew G Knepley } 3632e6ccafaeSMatthew G Knepley PetscFunctionReturn(0); 3633e6ccafaeSMatthew G Knepley } 3634e6ccafaeSMatthew G Knepley 3635bec263e5SMatthew G. Knepley /*@ 3636bec263e5SMatthew G. Knepley DMPlexFilter - Extract a subset of mesh cells defined by a label as a separate mesh 3637bec263e5SMatthew G. Knepley 3638bec263e5SMatthew G. Knepley Input Parameters: 3639bec263e5SMatthew G. Knepley + dm - The original mesh 3640bec263e5SMatthew G. Knepley . cellLabel - The DMLabel marking cells contained in the new mesh 3641bec263e5SMatthew G. Knepley - value - The label value to use 3642bec263e5SMatthew G. Knepley 3643bec263e5SMatthew G. Knepley Output Parameter: 3644bec263e5SMatthew G. Knepley . subdm - The new mesh 3645bec263e5SMatthew G. Knepley 3646bec263e5SMatthew G. Knepley Note: This function produces a DMLabel mapping original points in the submesh to their depth. This can be obtained using DMPlexGetSubpointMap(). 3647bec263e5SMatthew G. Knepley 3648bec263e5SMatthew G. Knepley Level: developer 3649bec263e5SMatthew G. Knepley 3650c58f1c22SToby Isaac .seealso: DMPlexGetSubpointMap(), DMGetLabel(), DMLabelSetValue() 3651bec263e5SMatthew G. Knepley @*/ 3652bec263e5SMatthew G. Knepley PetscErrorCode DMPlexFilter(DM dm, DMLabel cellLabel, PetscInt value, DM *subdm) 3653bec263e5SMatthew G. Knepley { 3654bec263e5SMatthew G. Knepley PetscInt dim; 3655bec263e5SMatthew G. Knepley PetscErrorCode ierr; 3656bec263e5SMatthew G. Knepley 3657bec263e5SMatthew G. Knepley PetscFunctionBegin; 3658bec263e5SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 3659064a246eSJacob Faibussowitsch PetscValidPointer(subdm, 4); 3660bec263e5SMatthew G. Knepley ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr); 3661bec263e5SMatthew G. Knepley ierr = DMCreate(PetscObjectComm((PetscObject) dm), subdm);CHKERRQ(ierr); 3662bec263e5SMatthew G. Knepley ierr = DMSetType(*subdm, DMPLEX);CHKERRQ(ierr); 3663bec263e5SMatthew G. Knepley ierr = DMSetDimension(*subdm, dim);CHKERRQ(ierr); 3664bec263e5SMatthew G. Knepley /* Extract submesh in place, could be empty on some procs, could have inconsistency if procs do not both extract a shared cell */ 3665158acfadSMatthew G. Knepley ierr = DMPlexCreateSubmeshGeneric_Interpolated(dm, cellLabel, value, PETSC_FALSE, PETSC_FALSE, 0, *subdm);CHKERRQ(ierr); 3666bec263e5SMatthew G. Knepley PetscFunctionReturn(0); 3667bec263e5SMatthew G. Knepley } 3668bec263e5SMatthew G. Knepley 366964beef6dSMatthew G. Knepley /*@ 367064beef6dSMatthew G. Knepley DMPlexGetSubpointMap - Returns a DMLabel with point dimension as values 367164beef6dSMatthew G. Knepley 367264beef6dSMatthew G. Knepley Input Parameter: 367364beef6dSMatthew G. Knepley . dm - The submesh DM 367464beef6dSMatthew G. Knepley 367564beef6dSMatthew G. Knepley Output Parameter: 367664beef6dSMatthew G. Knepley . subpointMap - The DMLabel of all the points from the original mesh in this submesh, or NULL if this is not a submesh 367764beef6dSMatthew G. Knepley 367864beef6dSMatthew G. Knepley Level: developer 367964beef6dSMatthew G. Knepley 368097d8846cSMatthew Knepley .seealso: DMPlexCreateSubmesh(), DMPlexGetSubpointIS() 368164beef6dSMatthew G. Knepley @*/ 3682e6ccafaeSMatthew G Knepley PetscErrorCode DMPlexGetSubpointMap(DM dm, DMLabel *subpointMap) 3683e6ccafaeSMatthew G Knepley { 3684e6ccafaeSMatthew G Knepley PetscFunctionBegin; 3685e6ccafaeSMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 3686e6ccafaeSMatthew G Knepley PetscValidPointer(subpointMap, 2); 368765663942SMatthew G. Knepley *subpointMap = ((DM_Plex*) dm->data)->subpointMap; 3688e6ccafaeSMatthew G Knepley PetscFunctionReturn(0); 3689e6ccafaeSMatthew G Knepley } 3690e6ccafaeSMatthew G Knepley 3691c08575a3SMatthew G. Knepley /*@ 3692c08575a3SMatthew G. Knepley DMPlexSetSubpointMap - Sets the DMLabel with point dimension as values 3693c08575a3SMatthew G. Knepley 3694c08575a3SMatthew G. Knepley Input Parameters: 3695c08575a3SMatthew G. Knepley + dm - The submesh DM 3696c08575a3SMatthew G. Knepley - subpointMap - The DMLabel of all the points from the original mesh in this submesh 3697c08575a3SMatthew G. Knepley 3698c08575a3SMatthew G. Knepley Note: Should normally not be called by the user, since it is set in DMPlexCreateSubmesh() 3699c08575a3SMatthew G. Knepley 3700c08575a3SMatthew G. Knepley Level: developer 3701c08575a3SMatthew G. Knepley 370297d8846cSMatthew Knepley .seealso: DMPlexCreateSubmesh(), DMPlexGetSubpointIS() 3703c08575a3SMatthew G. Knepley @*/ 3704e6ccafaeSMatthew G Knepley PetscErrorCode DMPlexSetSubpointMap(DM dm, DMLabel subpointMap) 3705e6ccafaeSMatthew G Knepley { 3706e6ccafaeSMatthew G Knepley DM_Plex *mesh = (DM_Plex *) dm->data; 3707285d324eSMatthew G. Knepley DMLabel tmp; 3708e6ccafaeSMatthew G Knepley PetscErrorCode ierr; 3709e6ccafaeSMatthew G Knepley 3710e6ccafaeSMatthew G Knepley PetscFunctionBegin; 3711e6ccafaeSMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 3712285d324eSMatthew G. Knepley tmp = mesh->subpointMap; 3713e6ccafaeSMatthew G Knepley mesh->subpointMap = subpointMap; 3714d67d17b1SMatthew G. Knepley ierr = PetscObjectReference((PetscObject) mesh->subpointMap);CHKERRQ(ierr); 3715285d324eSMatthew G. Knepley ierr = DMLabelDestroy(&tmp);CHKERRQ(ierr); 3716e6ccafaeSMatthew G Knepley PetscFunctionReturn(0); 3717e6ccafaeSMatthew G Knepley } 3718e6ccafaeSMatthew G Knepley 371997d8846cSMatthew Knepley static PetscErrorCode DMPlexCreateSubpointIS_Internal(DM dm, IS *subpointIS) 372097d8846cSMatthew Knepley { 372197d8846cSMatthew Knepley DMLabel spmap; 372297d8846cSMatthew Knepley PetscInt depth, d; 372397d8846cSMatthew Knepley PetscErrorCode ierr; 372497d8846cSMatthew Knepley 372597d8846cSMatthew Knepley PetscFunctionBegin; 372697d8846cSMatthew Knepley ierr = DMPlexGetSubpointMap(dm, &spmap);CHKERRQ(ierr); 372797d8846cSMatthew Knepley ierr = DMPlexGetDepth(dm, &depth);CHKERRQ(ierr); 372897d8846cSMatthew Knepley if (spmap && depth >= 0) { 372997d8846cSMatthew Knepley DM_Plex *mesh = (DM_Plex *) dm->data; 373097d8846cSMatthew Knepley PetscInt *points, *depths; 373197d8846cSMatthew Knepley PetscInt pStart, pEnd, p, off; 373297d8846cSMatthew Knepley 373397d8846cSMatthew Knepley ierr = DMPlexGetChart(dm, &pStart, &pEnd);CHKERRQ(ierr); 373497d8846cSMatthew Knepley if (pStart) SETERRQ1(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Submeshes must start the point numbering at 0, not %d", pStart); 373597d8846cSMatthew Knepley ierr = PetscMalloc1(pEnd, &points);CHKERRQ(ierr); 373697d8846cSMatthew Knepley ierr = DMGetWorkArray(dm, depth+1, MPIU_INT, &depths);CHKERRQ(ierr); 373797d8846cSMatthew Knepley depths[0] = depth; 373897d8846cSMatthew Knepley depths[1] = 0; 373997d8846cSMatthew Knepley for (d = 2; d <= depth; ++d) {depths[d] = depth+1 - d;} 374097d8846cSMatthew Knepley for (d = 0, off = 0; d <= depth; ++d) { 374197d8846cSMatthew Knepley const PetscInt dep = depths[d]; 374297d8846cSMatthew Knepley PetscInt depStart, depEnd, n; 374397d8846cSMatthew Knepley 374497d8846cSMatthew Knepley ierr = DMPlexGetDepthStratum(dm, dep, &depStart, &depEnd);CHKERRQ(ierr); 374597d8846cSMatthew Knepley ierr = DMLabelGetStratumSize(spmap, dep, &n);CHKERRQ(ierr); 374697d8846cSMatthew Knepley if (((d < 2) && (depth > 1)) || (d == 1)) { /* Only check vertices and cells for now since the map is broken for others */ 374797d8846cSMatthew Knepley if (n != depEnd-depStart) SETERRQ3(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "The number of mapped submesh points %d at depth %d should be %d", n, dep, depEnd-depStart); 374897d8846cSMatthew Knepley } else { 374997d8846cSMatthew Knepley if (!n) { 375097d8846cSMatthew Knepley if (d == 0) { 375197d8846cSMatthew Knepley /* Missing cells */ 375297d8846cSMatthew Knepley for (p = 0; p < depEnd-depStart; ++p, ++off) points[off] = -1; 375397d8846cSMatthew Knepley } else { 375497d8846cSMatthew Knepley /* Missing faces */ 375597d8846cSMatthew Knepley for (p = 0; p < depEnd-depStart; ++p, ++off) points[off] = PETSC_MAX_INT; 375697d8846cSMatthew Knepley } 375797d8846cSMatthew Knepley } 375897d8846cSMatthew Knepley } 375997d8846cSMatthew Knepley if (n) { 376097d8846cSMatthew Knepley IS is; 376197d8846cSMatthew Knepley const PetscInt *opoints; 376297d8846cSMatthew Knepley 376397d8846cSMatthew Knepley ierr = DMLabelGetStratumIS(spmap, dep, &is);CHKERRQ(ierr); 376497d8846cSMatthew Knepley ierr = ISGetIndices(is, &opoints);CHKERRQ(ierr); 376597d8846cSMatthew Knepley for (p = 0; p < n; ++p, ++off) points[off] = opoints[p]; 376697d8846cSMatthew Knepley ierr = ISRestoreIndices(is, &opoints);CHKERRQ(ierr); 376797d8846cSMatthew Knepley ierr = ISDestroy(&is);CHKERRQ(ierr); 376897d8846cSMatthew Knepley } 376997d8846cSMatthew Knepley } 377097d8846cSMatthew Knepley ierr = DMRestoreWorkArray(dm, depth+1, MPIU_INT, &depths);CHKERRQ(ierr); 377197d8846cSMatthew Knepley if (off != pEnd) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "The number of mapped submesh points %d should be %d", off, pEnd); 377297d8846cSMatthew Knepley ierr = ISCreateGeneral(PETSC_COMM_SELF, pEnd, points, PETSC_OWN_POINTER, subpointIS);CHKERRQ(ierr); 377397d8846cSMatthew Knepley ierr = PetscObjectStateGet((PetscObject) spmap, &mesh->subpointState);CHKERRQ(ierr); 377497d8846cSMatthew Knepley } 377597d8846cSMatthew Knepley PetscFunctionReturn(0); 377697d8846cSMatthew Knepley } 377797d8846cSMatthew Knepley 377864beef6dSMatthew G. Knepley /*@ 377997d8846cSMatthew Knepley DMPlexGetSubpointIS - Returns an IS covering the entire subdm chart with the original points as data 3780e6ccafaeSMatthew G Knepley 3781e6ccafaeSMatthew G Knepley Input Parameter: 3782e6ccafaeSMatthew G Knepley . dm - The submesh DM 3783e6ccafaeSMatthew G Knepley 3784e6ccafaeSMatthew G Knepley Output Parameter: 37850298fd71SBarry Smith . subpointIS - The IS of all the points from the original mesh in this submesh, or NULL if this is not a submesh 3786e6ccafaeSMatthew G Knepley 37873982b651SMatthew G. Knepley Note: This IS is guaranteed to be sorted by the construction of the submesh 378864beef6dSMatthew G. Knepley 378964beef6dSMatthew G. Knepley Level: developer 379064beef6dSMatthew G. Knepley 379164beef6dSMatthew G. Knepley .seealso: DMPlexCreateSubmesh(), DMPlexGetSubpointMap() 379264beef6dSMatthew G. Knepley @*/ 379397d8846cSMatthew Knepley PetscErrorCode DMPlexGetSubpointIS(DM dm, IS *subpointIS) 3794e6ccafaeSMatthew G Knepley { 379597d8846cSMatthew Knepley DM_Plex *mesh = (DM_Plex *) dm->data; 379697d8846cSMatthew Knepley DMLabel spmap; 379797d8846cSMatthew Knepley PetscObjectState state; 3798e6ccafaeSMatthew G Knepley PetscErrorCode ierr; 3799e6ccafaeSMatthew G Knepley 3800e6ccafaeSMatthew G Knepley PetscFunctionBegin; 3801e6ccafaeSMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 3802e6ccafaeSMatthew G Knepley PetscValidPointer(subpointIS, 2); 380397d8846cSMatthew Knepley ierr = DMPlexGetSubpointMap(dm, &spmap);CHKERRQ(ierr); 380497d8846cSMatthew Knepley ierr = PetscObjectStateGet((PetscObject) spmap, &state);CHKERRQ(ierr); 380597d8846cSMatthew Knepley if (state != mesh->subpointState || !mesh->subpointIS) {ierr = DMPlexCreateSubpointIS_Internal(dm, &mesh->subpointIS);CHKERRQ(ierr);} 380697d8846cSMatthew Knepley *subpointIS = mesh->subpointIS; 3807e6ccafaeSMatthew G Knepley PetscFunctionReturn(0); 3808e6ccafaeSMatthew G Knepley } 3809559a1558SMatthew G. Knepley 3810559a1558SMatthew G. Knepley /*@ 3811a6e0b375SMatthew G. Knepley DMGetEnclosureRelation - Get the relationship between dmA and dmB 3812559a1558SMatthew G. Knepley 3813559a1558SMatthew G. Knepley Input Parameters: 3814a6e0b375SMatthew G. Knepley + dmA - The first DM 3815a6e0b375SMatthew G. Knepley - dmB - The second DM 3816559a1558SMatthew G. Knepley 3817559a1558SMatthew G. Knepley Output Parameter: 3818a6e0b375SMatthew G. Knepley . rel - The relation of dmA to dmB 3819559a1558SMatthew G. Knepley 3820a6e0b375SMatthew G. Knepley Level: intermediate 3821559a1558SMatthew G. Knepley 3822446c23c1SPierre Jolivet .seealso: DMGetEnclosurePoint() 3823559a1558SMatthew G. Knepley @*/ 3824a6e0b375SMatthew G. Knepley PetscErrorCode DMGetEnclosureRelation(DM dmA, DM dmB, DMEnclosureType *rel) 3825559a1558SMatthew G. Knepley { 3826a6e0b375SMatthew G. Knepley DM plexA, plexB, sdm; 3827559a1558SMatthew G. Knepley DMLabel spmap; 3828a6e0b375SMatthew G. Knepley PetscInt pStartA, pEndA, pStartB, pEndB, NpA, NpB; 3829559a1558SMatthew G. Knepley PetscErrorCode ierr; 3830559a1558SMatthew G. Knepley 383144171101SMatthew G. Knepley PetscFunctionBegin; 3832a6e0b375SMatthew G. Knepley PetscValidPointer(rel, 3); 3833a6e0b375SMatthew G. Knepley *rel = DM_ENC_NONE; 3834a6e0b375SMatthew G. Knepley if (!dmA || !dmB) PetscFunctionReturn(0); 3835a6e0b375SMatthew G. Knepley PetscValidHeaderSpecific(dmA, DM_CLASSID, 1); 3836064a246eSJacob Faibussowitsch PetscValidHeaderSpecific(dmB, DM_CLASSID, 2); 3837a6e0b375SMatthew G. Knepley if (dmA == dmB) {*rel = DM_ENC_EQUALITY; PetscFunctionReturn(0);} 3838a6e0b375SMatthew G. Knepley ierr = DMConvert(dmA, DMPLEX, &plexA);CHKERRQ(ierr); 3839a6e0b375SMatthew G. Knepley ierr = DMConvert(dmB, DMPLEX, &plexB);CHKERRQ(ierr); 3840a6e0b375SMatthew G. Knepley ierr = DMPlexGetChart(plexA, &pStartA, &pEndA);CHKERRQ(ierr); 3841a6e0b375SMatthew G. Knepley ierr = DMPlexGetChart(plexB, &pStartB, &pEndB);CHKERRQ(ierr); 3842a6e0b375SMatthew G. Knepley /* Assumption 1: subDMs have smaller charts than the DMs that they originate from 3843a6e0b375SMatthew G. Knepley - The degenerate case of a subdomain which includes all of the domain on some process can be treated as equality */ 3844a6e0b375SMatthew G. Knepley if ((pStartA == pStartB) && (pEndA == pEndB)) { 3845a6e0b375SMatthew G. Knepley *rel = DM_ENC_EQUALITY; 3846a6e0b375SMatthew G. Knepley goto end; 3847559a1558SMatthew G. Knepley } 3848a6e0b375SMatthew G. Knepley NpA = pEndA - pStartA; 3849a6e0b375SMatthew G. Knepley NpB = pEndB - pStartB; 3850a6e0b375SMatthew G. Knepley if (NpA == NpB) goto end; 3851a6e0b375SMatthew G. Knepley sdm = NpA > NpB ? plexB : plexA; /* The other is the original, enclosing dm */ 3852a6e0b375SMatthew G. Knepley ierr = DMPlexGetSubpointMap(sdm, &spmap);CHKERRQ(ierr); 3853a6e0b375SMatthew G. Knepley if (!spmap) goto end; 3854a6e0b375SMatthew G. Knepley /* TODO Check the space mapped to by subpointMap is same size as dm */ 3855a6e0b375SMatthew G. Knepley if (NpA > NpB) { 3856a6e0b375SMatthew G. Knepley *rel = DM_ENC_SUPERMESH; 3857a6e0b375SMatthew G. Knepley } else { 3858a6e0b375SMatthew G. Knepley *rel = DM_ENC_SUBMESH; 3859a6e0b375SMatthew G. Knepley } 3860a6e0b375SMatthew G. Knepley end: 3861a6e0b375SMatthew G. Knepley ierr = DMDestroy(&plexA);CHKERRQ(ierr); 3862a6e0b375SMatthew G. Knepley ierr = DMDestroy(&plexB);CHKERRQ(ierr); 3863559a1558SMatthew G. Knepley PetscFunctionReturn(0); 3864559a1558SMatthew G. Knepley } 386544171101SMatthew G. Knepley 386644171101SMatthew G. Knepley /*@ 3867a6e0b375SMatthew G. Knepley DMGetEnclosurePoint - Get the point pA in dmA which corresponds to the point pB in dmB 386844171101SMatthew G. Knepley 386944171101SMatthew G. Knepley Input Parameters: 3870a6e0b375SMatthew G. Knepley + dmA - The first DM 3871a6e0b375SMatthew G. Knepley . dmB - The second DM 3872a6e0b375SMatthew G. Knepley . etype - The type of enclosure relation that dmA has to dmB 3873a6e0b375SMatthew G. Knepley - pB - A point of dmB 387444171101SMatthew G. Knepley 387544171101SMatthew G. Knepley Output Parameter: 3876a6e0b375SMatthew G. Knepley . pA - The corresponding point of dmA 387744171101SMatthew G. Knepley 3878a6e0b375SMatthew G. Knepley Level: intermediate 387944171101SMatthew G. Knepley 3880a6e0b375SMatthew G. Knepley .seealso: DMGetEnclosureRelation() 388144171101SMatthew G. Knepley @*/ 3882a6e0b375SMatthew G. Knepley PetscErrorCode DMGetEnclosurePoint(DM dmA, DM dmB, DMEnclosureType etype, PetscInt pB, PetscInt *pA) 388344171101SMatthew G. Knepley { 3884a6e0b375SMatthew G. Knepley DM sdm; 3885a6e0b375SMatthew G. Knepley IS subpointIS; 3886a6e0b375SMatthew G. Knepley const PetscInt *subpoints; 3887a6e0b375SMatthew G. Knepley PetscInt numSubpoints; 388844171101SMatthew G. Knepley PetscErrorCode ierr; 388944171101SMatthew G. Knepley 389044171101SMatthew G. Knepley PetscFunctionBegin; 3891a6e0b375SMatthew G. Knepley /* TODO Cache the IS, making it look like an index */ 3892a6e0b375SMatthew G. Knepley switch (etype) { 3893a6e0b375SMatthew G. Knepley case DM_ENC_SUPERMESH: 3894a6e0b375SMatthew G. Knepley sdm = dmB; 389597d8846cSMatthew Knepley ierr = DMPlexGetSubpointIS(sdm, &subpointIS);CHKERRQ(ierr); 3896a6e0b375SMatthew G. Knepley ierr = ISGetIndices(subpointIS, &subpoints);CHKERRQ(ierr); 3897a6e0b375SMatthew G. Knepley *pA = subpoints[pB]; 3898a6e0b375SMatthew G. Knepley ierr = ISRestoreIndices(subpointIS, &subpoints);CHKERRQ(ierr); 3899a6e0b375SMatthew G. Knepley break; 3900a6e0b375SMatthew G. Knepley case DM_ENC_SUBMESH: 3901a6e0b375SMatthew G. Knepley sdm = dmA; 390297d8846cSMatthew Knepley ierr = DMPlexGetSubpointIS(sdm, &subpointIS);CHKERRQ(ierr); 3903a6e0b375SMatthew G. Knepley ierr = ISGetLocalSize(subpointIS, &numSubpoints);CHKERRQ(ierr); 3904a6e0b375SMatthew G. Knepley ierr = ISGetIndices(subpointIS, &subpoints);CHKERRQ(ierr); 3905a6e0b375SMatthew G. Knepley ierr = PetscFindInt(pB, numSubpoints, subpoints, pA);CHKERRQ(ierr); 3906a6e0b375SMatthew G. Knepley if (*pA < 0) { 3907a6e0b375SMatthew G. Knepley ierr = DMViewFromOptions(dmA, NULL, "-dm_enc_A_view");CHKERRQ(ierr); 3908a6e0b375SMatthew G. Knepley ierr = DMViewFromOptions(dmB, NULL, "-dm_enc_B_view");CHKERRQ(ierr); 3909a6e0b375SMatthew G. Knepley SETERRQ1(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Point %d not found in submesh", pB); 3910a6e0b375SMatthew G. Knepley } 3911a6e0b375SMatthew G. Knepley ierr = ISRestoreIndices(subpointIS, &subpoints);CHKERRQ(ierr); 3912a6e0b375SMatthew G. Knepley break; 3913a6e0b375SMatthew G. Knepley case DM_ENC_EQUALITY: 3914a6e0b375SMatthew G. Knepley case DM_ENC_NONE: 3915a6e0b375SMatthew G. Knepley *pA = pB;break; 3916a6e0b375SMatthew G. Knepley case DM_ENC_UNKNOWN: 3917a6e0b375SMatthew G. Knepley { 3918a6e0b375SMatthew G. Knepley DMEnclosureType enc; 391944171101SMatthew G. Knepley 3920a6e0b375SMatthew G. Knepley ierr = DMGetEnclosureRelation(dmA, dmB, &enc);CHKERRQ(ierr); 3921a6e0b375SMatthew G. Knepley ierr = DMGetEnclosurePoint(dmA, dmB, enc, pB, pA);CHKERRQ(ierr); 3922a6e0b375SMatthew G. Knepley } 3923a6e0b375SMatthew G. Knepley break; 3924a6e0b375SMatthew G. Knepley default: SETERRQ1(PetscObjectComm((PetscObject) dmA), PETSC_ERR_ARG_OUTOFRANGE, "Invalid enclosure type %d", (int) etype); 392544171101SMatthew G. Knepley } 392644171101SMatthew G. Knepley PetscFunctionReturn(0); 392744171101SMatthew G. Knepley } 3928