1af0996ceSBarry Smith #include <petsc/private/dmpleximpl.h> /*I "petscdmplex.h" I*/ 2c58f1c22SToby Isaac #include <petsc/private/dmlabelimpl.h> /*I "petscdmlabel.h" I*/ 30c312b8eSJed Brown #include <petscsf.h> 4e6ccafaeSMatthew G Knepley 5412e9a14SMatthew G. Knepley static PetscErrorCode DMPlexCellIsHybrid_Internal(DM dm, PetscInt p, PetscBool *isHybrid) 6412e9a14SMatthew G. Knepley { 7412e9a14SMatthew G. Knepley DMPolytopeType ct; 8412e9a14SMatthew G. Knepley 9412e9a14SMatthew G. Knepley PetscFunctionBegin; 10*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexGetCellType(dm, p, &ct)); 11412e9a14SMatthew G. Knepley switch (ct) { 12412e9a14SMatthew G. Knepley case DM_POLYTOPE_POINT_PRISM_TENSOR: 13412e9a14SMatthew G. Knepley case DM_POLYTOPE_SEG_PRISM_TENSOR: 14412e9a14SMatthew G. Knepley case DM_POLYTOPE_TRI_PRISM_TENSOR: 15412e9a14SMatthew G. Knepley case DM_POLYTOPE_QUAD_PRISM_TENSOR: 16412e9a14SMatthew G. Knepley *isHybrid = PETSC_TRUE; 17412e9a14SMatthew G. Knepley default: *isHybrid = PETSC_FALSE; 18412e9a14SMatthew G. Knepley } 19412e9a14SMatthew G. Knepley PetscFunctionReturn(0); 20412e9a14SMatthew G. Knepley } 21412e9a14SMatthew G. Knepley 22412e9a14SMatthew G. Knepley static PetscErrorCode DMPlexGetTensorPrismBounds_Internal(DM dm, PetscInt dim, PetscInt *cStart, PetscInt *cEnd) 23412e9a14SMatthew G. Knepley { 24412e9a14SMatthew G. Knepley DMLabel ctLabel; 25412e9a14SMatthew G. Knepley 26412e9a14SMatthew G. Knepley PetscFunctionBegin; 27412e9a14SMatthew G. Knepley if (cStart) *cStart = -1; 28412e9a14SMatthew G. Knepley if (cEnd) *cEnd = -1; 29*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexGetCellTypeLabel(dm, &ctLabel)); 30412e9a14SMatthew G. Knepley switch (dim) { 31*5f80ce2aSJacob Faibussowitsch case 1: CHKERRQ(DMLabelGetStratumBounds(ctLabel, DM_POLYTOPE_POINT_PRISM_TENSOR, cStart, cEnd));break; 32*5f80ce2aSJacob Faibussowitsch case 2: CHKERRQ(DMLabelGetStratumBounds(ctLabel, DM_POLYTOPE_SEG_PRISM_TENSOR, cStart, cEnd));break; 33412e9a14SMatthew G. Knepley case 3: 34*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMLabelGetStratumBounds(ctLabel, DM_POLYTOPE_TRI_PRISM_TENSOR, cStart, cEnd)); 35*5f80ce2aSJacob Faibussowitsch if (*cStart < 0) CHKERRQ(DMLabelGetStratumBounds(ctLabel, DM_POLYTOPE_QUAD_PRISM_TENSOR, cStart, cEnd)); 36412e9a14SMatthew G. Knepley break; 37412e9a14SMatthew G. Knepley default: PetscFunctionReturn(0); 38412e9a14SMatthew G. Knepley } 39412e9a14SMatthew G. Knepley PetscFunctionReturn(0); 40412e9a14SMatthew G. Knepley } 41412e9a14SMatthew G. Knepley 42e752be1aSMatthew G. Knepley static PetscErrorCode DMPlexMarkBoundaryFaces_Internal(DM dm, PetscInt val, PetscInt cellHeight, DMLabel label) 4330560a7bSMatthew G. Knepley { 4430560a7bSMatthew G. Knepley PetscInt fStart, fEnd, f; 4530560a7bSMatthew G. Knepley 4630560a7bSMatthew G. Knepley PetscFunctionBegin; 47*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexGetHeightStratum(dm, cellHeight+1, &fStart, &fEnd)); 4830560a7bSMatthew G. Knepley for (f = fStart; f < fEnd; ++f) { 4930560a7bSMatthew G. Knepley PetscInt supportSize; 5030560a7bSMatthew G. Knepley 51*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexGetSupportSize(dm, f, &supportSize)); 52e752be1aSMatthew G. Knepley if (supportSize == 1) { 53e752be1aSMatthew G. Knepley if (val < 0) { 54e752be1aSMatthew G. Knepley PetscInt *closure = NULL; 55e752be1aSMatthew G. Knepley PetscInt clSize, cl, cval; 56e752be1aSMatthew G. Knepley 57*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexGetTransitiveClosure(dm, f, PETSC_TRUE, &clSize, &closure)); 58e752be1aSMatthew G. Knepley for (cl = 0; cl < clSize*2; cl += 2) { 59*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMLabelGetValue(label, closure[cl], &cval)); 60e752be1aSMatthew G. Knepley if (cval < 0) continue; 61*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMLabelSetValue(label, f, cval)); 62e752be1aSMatthew G. Knepley break; 63e752be1aSMatthew G. Knepley } 64*5f80ce2aSJacob Faibussowitsch if (cl == clSize*2) CHKERRQ(DMLabelSetValue(label, f, 1)); 65*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexRestoreTransitiveClosure(dm, f, PETSC_TRUE, &clSize, &closure)); 66e752be1aSMatthew G. Knepley } else { 67*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMLabelSetValue(label, f, val)); 68e752be1aSMatthew G. Knepley } 69e752be1aSMatthew G. Knepley } 7030560a7bSMatthew G. Knepley } 7130560a7bSMatthew G. Knepley PetscFunctionReturn(0); 7230560a7bSMatthew G. Knepley } 7330560a7bSMatthew G. Knepley 74cd0c2139SMatthew G Knepley /*@ 75cd0c2139SMatthew G Knepley DMPlexMarkBoundaryFaces - Mark all faces on the boundary 76cd0c2139SMatthew G Knepley 77cd0c2139SMatthew G Knepley Not Collective 78cd0c2139SMatthew G Knepley 79d8d19677SJose E. Roman Input Parameters: 80e752be1aSMatthew G. Knepley + dm - The original DM 81e752be1aSMatthew G. Knepley - val - The marker value, or PETSC_DETERMINE to use some value in the closure (or 1 if none are found) 82cd0c2139SMatthew G Knepley 83cd0c2139SMatthew G Knepley Output Parameter: 84e752be1aSMatthew G. Knepley . label - The DMLabel marking boundary faces with the given value 85cd0c2139SMatthew G Knepley 86cd0c2139SMatthew G Knepley Level: developer 87cd0c2139SMatthew G Knepley 88c58f1c22SToby Isaac .seealso: DMLabelCreate(), DMCreateLabel() 8909f723d9SJed Brown @*/ 90e752be1aSMatthew G. Knepley PetscErrorCode DMPlexMarkBoundaryFaces(DM dm, PetscInt val, DMLabel label) 91cd0c2139SMatthew G Knepley { 92827c4036SVaclav Hapla DMPlexInterpolatedFlag flg; 93cd0c2139SMatthew G Knepley 94cd0c2139SMatthew G Knepley PetscFunctionBegin; 95827c4036SVaclav Hapla PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 96*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexIsInterpolated(dm, &flg)); 972c71b3e2SJacob Faibussowitsch PetscCheckFalse(flg != DMPLEX_INTERPOLATED_FULL,PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "DM is not fully interpolated on this rank"); 98*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexMarkBoundaryFaces_Internal(dm, val, 0, label)); 99cd0c2139SMatthew G Knepley PetscFunctionReturn(0); 100cd0c2139SMatthew G Knepley } 101cd0c2139SMatthew G Knepley 102c08575a3SMatthew G. Knepley static PetscErrorCode DMPlexLabelComplete_Internal(DM dm, DMLabel label, PetscBool completeCells) 103b0bf5782SToby Isaac { 104b0bf5782SToby Isaac IS valueIS; 105ac51f24eSSander Arens PetscSF sfPoint; 106b0bf5782SToby Isaac const PetscInt *values; 107ac51f24eSSander Arens PetscInt numValues, v, cStart, cEnd, nroots; 108b0bf5782SToby Isaac 109b0bf5782SToby Isaac PetscFunctionBegin; 110*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMLabelGetNumValues(label, &numValues)); 111*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMLabelGetValueIS(label, &valueIS)); 112*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexGetHeightStratum(dm,0,&cStart,&cEnd)); 113*5f80ce2aSJacob Faibussowitsch CHKERRQ(ISGetIndices(valueIS, &values)); 114b0bf5782SToby Isaac for (v = 0; v < numValues; ++v) { 115b0bf5782SToby Isaac IS pointIS; 116b0bf5782SToby Isaac const PetscInt *points; 117b0bf5782SToby Isaac PetscInt numPoints, p; 118b0bf5782SToby Isaac 119*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMLabelGetStratumSize(label, values[v], &numPoints)); 120*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMLabelGetStratumIS(label, values[v], &pointIS)); 121*5f80ce2aSJacob Faibussowitsch CHKERRQ(ISGetIndices(pointIS, &points)); 122b0bf5782SToby Isaac for (p = 0; p < numPoints; ++p) { 123b0bf5782SToby Isaac PetscInt q = points[p]; 124b0bf5782SToby Isaac PetscInt *closure = NULL; 125b0bf5782SToby Isaac PetscInt closureSize, c; 126b0bf5782SToby Isaac 127b0bf5782SToby Isaac if (cStart <= q && q < cEnd && !completeCells) { /* skip cells */ 128b0bf5782SToby Isaac continue; 129b0bf5782SToby Isaac } 130*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexGetTransitiveClosure(dm, q, PETSC_TRUE, &closureSize, &closure)); 131b0bf5782SToby Isaac for (c = 0; c < closureSize*2; c += 2) { 132*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMLabelSetValue(label, closure[c], values[v])); 133b0bf5782SToby Isaac } 134*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexRestoreTransitiveClosure(dm, q, PETSC_TRUE, &closureSize, &closure)); 135b0bf5782SToby Isaac } 136*5f80ce2aSJacob Faibussowitsch CHKERRQ(ISRestoreIndices(pointIS, &points)); 137*5f80ce2aSJacob Faibussowitsch CHKERRQ(ISDestroy(&pointIS)); 138b0bf5782SToby Isaac } 139*5f80ce2aSJacob Faibussowitsch CHKERRQ(ISRestoreIndices(valueIS, &values)); 140*5f80ce2aSJacob Faibussowitsch CHKERRQ(ISDestroy(&valueIS)); 141*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMGetPointSF(dm, &sfPoint)); 142*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscSFGetGraph(sfPoint, &nroots, NULL, NULL, NULL)); 143ac51f24eSSander Arens if (nroots >= 0) { 14426279d81SSanderA DMLabel lblRoots, lblLeaves; 14526279d81SSanderA IS valueIS, pointIS; 14626279d81SSanderA const PetscInt *values; 14726279d81SSanderA PetscInt numValues, v; 14826279d81SSanderA 14926279d81SSanderA /* Pull point contributions from remote leaves into local roots */ 150*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMLabelGather(label, sfPoint, &lblLeaves)); 151*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMLabelGetValueIS(lblLeaves, &valueIS)); 152*5f80ce2aSJacob Faibussowitsch CHKERRQ(ISGetLocalSize(valueIS, &numValues)); 153*5f80ce2aSJacob Faibussowitsch CHKERRQ(ISGetIndices(valueIS, &values)); 15426279d81SSanderA for (v = 0; v < numValues; ++v) { 15526279d81SSanderA const PetscInt value = values[v]; 15626279d81SSanderA 157*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMLabelGetStratumIS(lblLeaves, value, &pointIS)); 158*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMLabelInsertIS(label, pointIS, value)); 159*5f80ce2aSJacob Faibussowitsch CHKERRQ(ISDestroy(&pointIS)); 16026279d81SSanderA } 161*5f80ce2aSJacob Faibussowitsch CHKERRQ(ISRestoreIndices(valueIS, &values)); 162*5f80ce2aSJacob Faibussowitsch CHKERRQ(ISDestroy(&valueIS)); 163*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMLabelDestroy(&lblLeaves)); 16426279d81SSanderA /* Push point contributions from roots into remote leaves */ 165*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMLabelDistribute(label, sfPoint, &lblRoots)); 166*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMLabelGetValueIS(lblRoots, &valueIS)); 167*5f80ce2aSJacob Faibussowitsch CHKERRQ(ISGetLocalSize(valueIS, &numValues)); 168*5f80ce2aSJacob Faibussowitsch CHKERRQ(ISGetIndices(valueIS, &values)); 16926279d81SSanderA for (v = 0; v < numValues; ++v) { 17026279d81SSanderA const PetscInt value = values[v]; 17126279d81SSanderA 172*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMLabelGetStratumIS(lblRoots, value, &pointIS)); 173*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMLabelInsertIS(label, pointIS, value)); 174*5f80ce2aSJacob Faibussowitsch CHKERRQ(ISDestroy(&pointIS)); 17526279d81SSanderA } 176*5f80ce2aSJacob Faibussowitsch CHKERRQ(ISRestoreIndices(valueIS, &values)); 177*5f80ce2aSJacob Faibussowitsch CHKERRQ(ISDestroy(&valueIS)); 178*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMLabelDestroy(&lblRoots)); 17926279d81SSanderA } 180b0bf5782SToby Isaac PetscFunctionReturn(0); 181b0bf5782SToby Isaac } 182b0bf5782SToby Isaac 1832be2b188SMatthew G Knepley /*@ 1842be2b188SMatthew G Knepley DMPlexLabelComplete - Starting with a label marking points on a surface, we add the transitive closure to the surface 1852be2b188SMatthew G Knepley 1862be2b188SMatthew G Knepley Input Parameters: 1872be2b188SMatthew G Knepley + dm - The DM 1882be2b188SMatthew G Knepley - label - A DMLabel marking the surface points 1892be2b188SMatthew G Knepley 1902be2b188SMatthew G Knepley Output Parameter: 1912be2b188SMatthew G Knepley . label - A DMLabel marking all surface points in the transitive closure 1922be2b188SMatthew G Knepley 1932be2b188SMatthew G Knepley Level: developer 1942be2b188SMatthew G Knepley 1952be2b188SMatthew G Knepley .seealso: DMPlexLabelCohesiveComplete() 1962be2b188SMatthew G Knepley @*/ 1972be2b188SMatthew G Knepley PetscErrorCode DMPlexLabelComplete(DM dm, DMLabel label) 1982be2b188SMatthew G Knepley { 1992be2b188SMatthew G Knepley PetscFunctionBegin; 200*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexLabelComplete_Internal(dm, label, PETSC_TRUE)); 2012be2b188SMatthew G Knepley PetscFunctionReturn(0); 2022be2b188SMatthew G Knepley } 2032be2b188SMatthew G Knepley 2046cf0e42fSMatthew G. Knepley /*@ 205a6e0b375SMatthew G. Knepley DMPlexLabelAddCells - Starting with a label marking points on a surface, we add a cell for each point 2066cf0e42fSMatthew G. Knepley 2076cf0e42fSMatthew G. Knepley Input Parameters: 2086cf0e42fSMatthew G. Knepley + dm - The DM 2096cf0e42fSMatthew G. Knepley - label - A DMLabel marking the surface points 2106cf0e42fSMatthew G. Knepley 2116cf0e42fSMatthew G. Knepley Output Parameter: 2126cf0e42fSMatthew G. Knepley . label - A DMLabel incorporating cells 2136cf0e42fSMatthew G. Knepley 2146cf0e42fSMatthew G. Knepley Level: developer 2156cf0e42fSMatthew G. Knepley 2166cf0e42fSMatthew G. Knepley Note: The cells allow FEM boundary conditions to be applied using the cell geometry 2176cf0e42fSMatthew G. Knepley 218a6e0b375SMatthew G. Knepley .seealso: DMPlexLabelAddFaceCells(), DMPlexLabelComplete(), DMPlexLabelCohesiveComplete() 2196cf0e42fSMatthew G. Knepley @*/ 2206cf0e42fSMatthew G. Knepley PetscErrorCode DMPlexLabelAddCells(DM dm, DMLabel label) 2216cf0e42fSMatthew G. Knepley { 2226cf0e42fSMatthew G. Knepley IS valueIS; 2236cf0e42fSMatthew G. Knepley const PetscInt *values; 224485ad865SMatthew G. Knepley PetscInt numValues, v, cStart, cEnd; 2256cf0e42fSMatthew G. Knepley 2266cf0e42fSMatthew G. Knepley PetscFunctionBegin; 227*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexGetSimplexOrBoxCells(dm, 0, &cStart, &cEnd)); 228*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMLabelGetNumValues(label, &numValues)); 229*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMLabelGetValueIS(label, &valueIS)); 230*5f80ce2aSJacob Faibussowitsch CHKERRQ(ISGetIndices(valueIS, &values)); 2316cf0e42fSMatthew G. Knepley for (v = 0; v < numValues; ++v) { 2326cf0e42fSMatthew G. Knepley IS pointIS; 2336cf0e42fSMatthew G. Knepley const PetscInt *points; 2346cf0e42fSMatthew G. Knepley PetscInt numPoints, p; 2356cf0e42fSMatthew G. Knepley 236*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMLabelGetStratumSize(label, values[v], &numPoints)); 237*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMLabelGetStratumIS(label, values[v], &pointIS)); 238*5f80ce2aSJacob Faibussowitsch CHKERRQ(ISGetIndices(pointIS, &points)); 2396cf0e42fSMatthew G. Knepley for (p = 0; p < numPoints; ++p) { 2406cf0e42fSMatthew G. Knepley PetscInt *closure = NULL; 241a6e0b375SMatthew G. Knepley PetscInt closureSize, cl; 2426cf0e42fSMatthew G. Knepley 243*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexGetTransitiveClosure(dm, points[p], PETSC_FALSE, &closureSize, &closure)); 24422eabd52SMatthew G. Knepley for (cl = closureSize-1; cl > 0; --cl) { 245a6e0b375SMatthew G. Knepley const PetscInt cell = closure[cl*2]; 246*5f80ce2aSJacob Faibussowitsch if ((cell >= cStart) && (cell < cEnd)) {CHKERRQ(DMLabelSetValue(label, cell, values[v])); break;} 24722eabd52SMatthew G. Knepley } 248*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexRestoreTransitiveClosure(dm, points[p], PETSC_FALSE, &closureSize, &closure)); 2496cf0e42fSMatthew G. Knepley } 250*5f80ce2aSJacob Faibussowitsch CHKERRQ(ISRestoreIndices(pointIS, &points)); 251*5f80ce2aSJacob Faibussowitsch CHKERRQ(ISDestroy(&pointIS)); 2526cf0e42fSMatthew G. Knepley } 253*5f80ce2aSJacob Faibussowitsch CHKERRQ(ISRestoreIndices(valueIS, &values)); 254*5f80ce2aSJacob Faibussowitsch CHKERRQ(ISDestroy(&valueIS)); 2556cf0e42fSMatthew G. Knepley PetscFunctionReturn(0); 2566cf0e42fSMatthew G. Knepley } 2576cf0e42fSMatthew G. Knepley 258f402d5e4SToby Isaac /*@ 259a6e0b375SMatthew G. Knepley DMPlexLabelAddFaceCells - Starting with a label marking faces on a surface, we add a cell for each face 260a6e0b375SMatthew G. Knepley 261a6e0b375SMatthew G. Knepley Input Parameters: 262a6e0b375SMatthew G. Knepley + dm - The DM 263a6e0b375SMatthew G. Knepley - label - A DMLabel marking the surface points 264a6e0b375SMatthew G. Knepley 265a6e0b375SMatthew G. Knepley Output Parameter: 266a6e0b375SMatthew G. Knepley . label - A DMLabel incorporating cells 267a6e0b375SMatthew G. Knepley 268a6e0b375SMatthew G. Knepley Level: developer 269a6e0b375SMatthew G. Knepley 270a6e0b375SMatthew G. Knepley Note: The cells allow FEM boundary conditions to be applied using the cell geometry 271a6e0b375SMatthew G. Knepley 272a6e0b375SMatthew G. Knepley .seealso: DMPlexLabelAddCells(), DMPlexLabelComplete(), DMPlexLabelCohesiveComplete() 273a6e0b375SMatthew G. Knepley @*/ 274a6e0b375SMatthew G. Knepley PetscErrorCode DMPlexLabelAddFaceCells(DM dm, DMLabel label) 275a6e0b375SMatthew G. Knepley { 276a6e0b375SMatthew G. Knepley IS valueIS; 277a6e0b375SMatthew G. Knepley const PetscInt *values; 278a6e0b375SMatthew G. Knepley PetscInt numValues, v, cStart, cEnd, fStart, fEnd; 279a6e0b375SMatthew G. Knepley 280a6e0b375SMatthew G. Knepley PetscFunctionBegin; 281*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexGetSimplexOrBoxCells(dm, 0, &cStart, &cEnd)); 282*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexGetHeightStratum(dm, 1, &fStart, &fEnd)); 283*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMLabelGetNumValues(label, &numValues)); 284*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMLabelGetValueIS(label, &valueIS)); 285*5f80ce2aSJacob Faibussowitsch CHKERRQ(ISGetIndices(valueIS, &values)); 286a6e0b375SMatthew G. Knepley for (v = 0; v < numValues; ++v) { 287a6e0b375SMatthew G. Knepley IS pointIS; 288a6e0b375SMatthew G. Knepley const PetscInt *points; 289a6e0b375SMatthew G. Knepley PetscInt numPoints, p; 290a6e0b375SMatthew G. Knepley 291*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMLabelGetStratumSize(label, values[v], &numPoints)); 292*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMLabelGetStratumIS(label, values[v], &pointIS)); 293*5f80ce2aSJacob Faibussowitsch CHKERRQ(ISGetIndices(pointIS, &points)); 294a6e0b375SMatthew G. Knepley for (p = 0; p < numPoints; ++p) { 295a6e0b375SMatthew G. Knepley const PetscInt face = points[p]; 296a6e0b375SMatthew G. Knepley PetscInt *closure = NULL; 297a6e0b375SMatthew G. Knepley PetscInt closureSize, cl; 298a6e0b375SMatthew G. Knepley 299a6e0b375SMatthew G. Knepley if ((face < fStart) || (face >= fEnd)) continue; 300*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexGetTransitiveClosure(dm, face, PETSC_FALSE, &closureSize, &closure)); 301a6e0b375SMatthew G. Knepley for (cl = closureSize-1; cl > 0; --cl) { 302a6e0b375SMatthew G. Knepley const PetscInt cell = closure[cl*2]; 303*5f80ce2aSJacob Faibussowitsch if ((cell >= cStart) && (cell < cEnd)) {CHKERRQ(DMLabelSetValue(label, cell, values[v])); break;} 304a6e0b375SMatthew G. Knepley } 305*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexRestoreTransitiveClosure(dm, face, PETSC_FALSE, &closureSize, &closure)); 306a6e0b375SMatthew G. Knepley } 307*5f80ce2aSJacob Faibussowitsch CHKERRQ(ISRestoreIndices(pointIS, &points)); 308*5f80ce2aSJacob Faibussowitsch CHKERRQ(ISDestroy(&pointIS)); 309a6e0b375SMatthew G. Knepley } 310*5f80ce2aSJacob Faibussowitsch CHKERRQ(ISRestoreIndices(valueIS, &values)); 311*5f80ce2aSJacob Faibussowitsch CHKERRQ(ISDestroy(&valueIS)); 312a6e0b375SMatthew G. Knepley PetscFunctionReturn(0); 313a6e0b375SMatthew G. Knepley } 314a6e0b375SMatthew G. Knepley 315a6e0b375SMatthew G. Knepley /*@ 316f402d5e4SToby Isaac DMPlexLabelClearCells - Remove cells from a label 317f402d5e4SToby Isaac 318f402d5e4SToby Isaac Input Parameters: 319f402d5e4SToby Isaac + dm - The DM 320f402d5e4SToby Isaac - label - A DMLabel marking surface points and their adjacent cells 321f402d5e4SToby Isaac 322f402d5e4SToby Isaac Output Parameter: 323f402d5e4SToby Isaac . label - A DMLabel without cells 324f402d5e4SToby Isaac 325f402d5e4SToby Isaac Level: developer 326f402d5e4SToby Isaac 327a6e0b375SMatthew G. Knepley Note: This undoes DMPlexLabelAddCells() or DMPlexLabelAddFaceCells() 328f402d5e4SToby Isaac 329f402d5e4SToby Isaac .seealso: DMPlexLabelComplete(), DMPlexLabelCohesiveComplete(), DMPlexLabelAddCells() 330f402d5e4SToby Isaac @*/ 331f402d5e4SToby Isaac PetscErrorCode DMPlexLabelClearCells(DM dm, DMLabel label) 332f402d5e4SToby Isaac { 333f402d5e4SToby Isaac IS valueIS; 334f402d5e4SToby Isaac const PetscInt *values; 335485ad865SMatthew G. Knepley PetscInt numValues, v, cStart, cEnd; 336f402d5e4SToby Isaac 337f402d5e4SToby Isaac PetscFunctionBegin; 338*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexGetSimplexOrBoxCells(dm, 0, &cStart, &cEnd)); 339*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMLabelGetNumValues(label, &numValues)); 340*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMLabelGetValueIS(label, &valueIS)); 341*5f80ce2aSJacob Faibussowitsch CHKERRQ(ISGetIndices(valueIS, &values)); 342f402d5e4SToby Isaac for (v = 0; v < numValues; ++v) { 343f402d5e4SToby Isaac IS pointIS; 344f402d5e4SToby Isaac const PetscInt *points; 345f402d5e4SToby Isaac PetscInt numPoints, p; 346f402d5e4SToby Isaac 347*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMLabelGetStratumSize(label, values[v], &numPoints)); 348*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMLabelGetStratumIS(label, values[v], &pointIS)); 349*5f80ce2aSJacob Faibussowitsch CHKERRQ(ISGetIndices(pointIS, &points)); 350f402d5e4SToby Isaac for (p = 0; p < numPoints; ++p) { 351f402d5e4SToby Isaac PetscInt point = points[p]; 352f402d5e4SToby Isaac 353f402d5e4SToby Isaac if (point >= cStart && point < cEnd) { 354*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMLabelClearValue(label,point,values[v])); 355f402d5e4SToby Isaac } 356f402d5e4SToby Isaac } 357*5f80ce2aSJacob Faibussowitsch CHKERRQ(ISRestoreIndices(pointIS, &points)); 358*5f80ce2aSJacob Faibussowitsch CHKERRQ(ISDestroy(&pointIS)); 359f402d5e4SToby Isaac } 360*5f80ce2aSJacob Faibussowitsch CHKERRQ(ISRestoreIndices(valueIS, &values)); 361*5f80ce2aSJacob Faibussowitsch CHKERRQ(ISDestroy(&valueIS)); 362f402d5e4SToby Isaac PetscFunctionReturn(0); 363f402d5e4SToby Isaac } 364f402d5e4SToby Isaac 36559eef20bSToby Isaac /* take (oldEnd, added) pairs, ordered by height and convert them to (oldstart, newstart) pairs, ordered by ascending 36659eef20bSToby Isaac * index (skipping first, which is (0,0)) */ 3679fbee547SJacob Faibussowitsch static inline PetscErrorCode DMPlexShiftPointSetUp_Internal(PetscInt depth, PetscInt depthShift[]) 368cd0c2139SMatthew G Knepley { 3692582d50cSToby Isaac PetscInt d, off = 0; 3702582d50cSToby Isaac 3712582d50cSToby Isaac PetscFunctionBegin; 37259eef20bSToby Isaac /* sort by (oldend): yes this is an O(n^2) sort, we expect depth <= 3 */ 3730974a383SToby Isaac for (d = 0; d < depth; d++) { 3742582d50cSToby Isaac PetscInt firstd = d; 3750974a383SToby Isaac PetscInt firstStart = depthShift[2*d]; 3762582d50cSToby Isaac PetscInt e; 3772582d50cSToby Isaac 3782582d50cSToby Isaac for (e = d+1; e <= depth; e++) { 3792582d50cSToby Isaac if (depthShift[2*e] < firstStart) { 3802582d50cSToby Isaac firstd = e; 3812582d50cSToby Isaac firstStart = depthShift[2*d]; 3822582d50cSToby Isaac } 3832582d50cSToby Isaac } 3842582d50cSToby Isaac if (firstd != d) { 3852582d50cSToby Isaac PetscInt swap[2]; 3862582d50cSToby Isaac 3872582d50cSToby Isaac e = firstd; 3882582d50cSToby Isaac swap[0] = depthShift[2*d]; 3892582d50cSToby Isaac swap[1] = depthShift[2*d+1]; 3902582d50cSToby Isaac depthShift[2*d] = depthShift[2*e]; 3912582d50cSToby Isaac depthShift[2*d+1] = depthShift[2*e+1]; 3922582d50cSToby Isaac depthShift[2*e] = swap[0]; 3932582d50cSToby Isaac depthShift[2*e+1] = swap[1]; 3942582d50cSToby Isaac } 3952582d50cSToby Isaac } 3962582d50cSToby Isaac /* convert (oldstart, added) to (oldstart, newstart) */ 3970974a383SToby Isaac for (d = 0; d <= depth; d++) { 3982582d50cSToby Isaac off += depthShift[2*d+1]; 39959eef20bSToby Isaac depthShift[2*d+1] = depthShift[2*d] + off; 4002582d50cSToby Isaac } 4012582d50cSToby Isaac PetscFunctionReturn(0); 4022582d50cSToby Isaac } 4032582d50cSToby Isaac 4042582d50cSToby Isaac /* depthShift is a list of (old, new) pairs */ 4059fbee547SJacob Faibussowitsch static inline PetscInt DMPlexShiftPoint_Internal(PetscInt p, PetscInt depth, PetscInt depthShift[]) 4062582d50cSToby Isaac { 4072582d50cSToby Isaac PetscInt d; 4082582d50cSToby Isaac PetscInt newOff = 0; 4092582d50cSToby Isaac 4102582d50cSToby Isaac for (d = 0; d <= depth; d++) { 4112582d50cSToby Isaac if (p < depthShift[2*d]) return p + newOff; 4122582d50cSToby Isaac else newOff = depthShift[2*d+1] - depthShift[2*d]; 4132582d50cSToby Isaac } 4140974a383SToby Isaac return p + newOff; 4152582d50cSToby Isaac } 4162582d50cSToby Isaac 4172582d50cSToby Isaac /* depthShift is a list of (old, new) pairs */ 4189fbee547SJacob Faibussowitsch static inline PetscInt DMPlexShiftPointInverse_Internal(PetscInt p, PetscInt depth, PetscInt depthShift[]) 4192582d50cSToby Isaac { 4202582d50cSToby Isaac PetscInt d; 4212582d50cSToby Isaac PetscInt newOff = 0; 4222582d50cSToby Isaac 4232582d50cSToby Isaac for (d = 0; d <= depth; d++) { 4242582d50cSToby Isaac if (p < depthShift[2*d+1]) return p + newOff; 4252582d50cSToby Isaac else newOff = depthShift[2*d] - depthShift[2*d+1]; 4262582d50cSToby Isaac } 4270974a383SToby Isaac return p + newOff; 428cd0c2139SMatthew G Knepley } 429cd0c2139SMatthew G Knepley 430cd0c2139SMatthew G Knepley static PetscErrorCode DMPlexShiftSizes_Internal(DM dm, PetscInt depthShift[], DM dmNew) 431cd0c2139SMatthew G Knepley { 432cd0c2139SMatthew G Knepley PetscInt depth = 0, d, pStart, pEnd, p; 433fa8e8ae5SToby Isaac DMLabel depthLabel; 434cd0c2139SMatthew G Knepley 435cd0c2139SMatthew G Knepley PetscFunctionBegin; 436*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexGetDepth(dm, &depth)); 437cd0c2139SMatthew G Knepley if (depth < 0) PetscFunctionReturn(0); 438cd0c2139SMatthew G Knepley /* Step 1: Expand chart */ 439*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexGetChart(dm, &pStart, &pEnd)); 4400974a383SToby Isaac pEnd = DMPlexShiftPoint_Internal(pEnd,depth,depthShift); 441*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexSetChart(dmNew, pStart, pEnd)); 442*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMCreateLabel(dmNew,"depth")); 443*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexGetDepthLabel(dmNew,&depthLabel)); 444*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMCreateLabel(dmNew, "celltype")); 445cd0c2139SMatthew G Knepley /* Step 2: Set cone and support sizes */ 446cd0c2139SMatthew G Knepley for (d = 0; d <= depth; ++d) { 447fa8e8ae5SToby Isaac PetscInt pStartNew, pEndNew; 448fa8e8ae5SToby Isaac IS pIS; 449fa8e8ae5SToby Isaac 450*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexGetDepthStratum(dm, d, &pStart, &pEnd)); 451fa8e8ae5SToby Isaac pStartNew = DMPlexShiftPoint_Internal(pStart, depth, depthShift); 452fa8e8ae5SToby Isaac pEndNew = DMPlexShiftPoint_Internal(pEnd, depth, depthShift); 453*5f80ce2aSJacob Faibussowitsch CHKERRQ(ISCreateStride(PETSC_COMM_SELF, pEndNew - pStartNew, pStartNew, 1, &pIS)); 454*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMLabelSetStratumIS(depthLabel, d, pIS)); 455*5f80ce2aSJacob Faibussowitsch CHKERRQ(ISDestroy(&pIS)); 456cd0c2139SMatthew G Knepley for (p = pStart; p < pEnd; ++p) { 4572582d50cSToby Isaac PetscInt newp = DMPlexShiftPoint_Internal(p, depth, depthShift); 458cd0c2139SMatthew G Knepley PetscInt size; 459412e9a14SMatthew G. Knepley DMPolytopeType ct; 460cd0c2139SMatthew G Knepley 461*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexGetConeSize(dm, p, &size)); 462*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexSetConeSize(dmNew, newp, size)); 463*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexGetSupportSize(dm, p, &size)); 464*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexSetSupportSize(dmNew, newp, size)); 465*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexGetCellType(dm, p, &ct)); 466*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexSetCellType(dmNew, newp, ct)); 467cd0c2139SMatthew G Knepley } 468cd0c2139SMatthew G Knepley } 469cd0c2139SMatthew G Knepley PetscFunctionReturn(0); 470cd0c2139SMatthew G Knepley } 471cd0c2139SMatthew G Knepley 472cd0c2139SMatthew G Knepley static PetscErrorCode DMPlexShiftPoints_Internal(DM dm, PetscInt depthShift[], DM dmNew) 473cd0c2139SMatthew G Knepley { 4742582d50cSToby Isaac PetscInt *newpoints; 4752582d50cSToby Isaac PetscInt depth = 0, maxConeSize, maxSupportSize, maxConeSizeNew, maxSupportSizeNew, pStart, pEnd, p; 476cd0c2139SMatthew G Knepley 477cd0c2139SMatthew G Knepley PetscFunctionBegin; 478*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexGetDepth(dm, &depth)); 479cd0c2139SMatthew G Knepley if (depth < 0) PetscFunctionReturn(0); 480*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexGetMaxSizes(dm, &maxConeSize, &maxSupportSize)); 481*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexGetMaxSizes(dmNew, &maxConeSizeNew, &maxSupportSizeNew)); 482*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscMalloc1(PetscMax(PetscMax(maxConeSize, maxSupportSize), PetscMax(maxConeSizeNew, maxSupportSizeNew)),&newpoints)); 483cd0c2139SMatthew G Knepley /* Step 5: Set cones and supports */ 484*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexGetChart(dm, &pStart, &pEnd)); 485cd0c2139SMatthew G Knepley for (p = pStart; p < pEnd; ++p) { 486cd0c2139SMatthew G Knepley const PetscInt *points = NULL, *orientations = NULL; 4872582d50cSToby Isaac PetscInt size,sizeNew, i, newp = DMPlexShiftPoint_Internal(p, depth, depthShift); 488cd0c2139SMatthew G Knepley 489*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexGetConeSize(dm, p, &size)); 490*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexGetCone(dm, p, &points)); 491*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexGetConeOrientation(dm, p, &orientations)); 492cd0c2139SMatthew G Knepley for (i = 0; i < size; ++i) { 4932582d50cSToby Isaac newpoints[i] = DMPlexShiftPoint_Internal(points[i], depth, depthShift); 494cd0c2139SMatthew G Knepley } 495*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexSetCone(dmNew, newp, newpoints)); 496*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexSetConeOrientation(dmNew, newp, orientations)); 497*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexGetSupportSize(dm, p, &size)); 498*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexGetSupportSize(dmNew, newp, &sizeNew)); 499*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexGetSupport(dm, p, &points)); 500cd0c2139SMatthew G Knepley for (i = 0; i < size; ++i) { 5012582d50cSToby Isaac newpoints[i] = DMPlexShiftPoint_Internal(points[i], depth, depthShift); 502cd0c2139SMatthew G Knepley } 503dcbb62e8SMatthew G. Knepley for (i = size; i < sizeNew; ++i) newpoints[i] = 0; 504*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexSetSupport(dmNew, newp, newpoints)); 505cd0c2139SMatthew G Knepley } 506*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscFree(newpoints)); 507cd0c2139SMatthew G Knepley PetscFunctionReturn(0); 508cd0c2139SMatthew G Knepley } 509cd0c2139SMatthew G Knepley 510cd0c2139SMatthew G Knepley static PetscErrorCode DMPlexShiftCoordinates_Internal(DM dm, PetscInt depthShift[], DM dmNew) 511cd0c2139SMatthew G Knepley { 512cd0c2139SMatthew G Knepley PetscSection coordSection, newCoordSection; 513cd0c2139SMatthew G Knepley Vec coordinates, newCoordinates; 514cd0c2139SMatthew G Knepley PetscScalar *coords, *newCoords; 515f2b8cce1SMatthew G. Knepley PetscInt coordSize, sStart, sEnd; 516f2b8cce1SMatthew G. Knepley PetscInt dim, depth = 0, cStart, cEnd, cStartNew, cEndNew, c, vStart, vEnd, vStartNew, vEndNew, v; 517f2b8cce1SMatthew G. Knepley PetscBool hasCells; 518cd0c2139SMatthew G Knepley 519cd0c2139SMatthew G Knepley PetscFunctionBegin; 520*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMGetCoordinateDim(dm, &dim)); 521*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMSetCoordinateDim(dmNew, dim)); 522*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexGetDepth(dm, &depth)); 523cd0c2139SMatthew G Knepley /* Step 8: Convert coordinates */ 524*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexGetDepthStratum(dm, 0, &vStart, &vEnd)); 525*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexGetHeightStratum(dm, 0, &cStart, &cEnd)); 526*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexGetDepthStratum(dmNew, 0, &vStartNew, &vEndNew)); 527*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexGetHeightStratum(dmNew, 0, &cStartNew, &cEndNew)); 528*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMGetCoordinateSection(dm, &coordSection)); 529*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscSectionCreate(PetscObjectComm((PetscObject)dm), &newCoordSection)); 530*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscSectionSetNumFields(newCoordSection, 1)); 531*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscSectionSetFieldComponents(newCoordSection, 0, dim)); 532*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscSectionGetChart(coordSection, &sStart, &sEnd)); 533f2b8cce1SMatthew G. Knepley hasCells = sStart == cStart ? PETSC_TRUE : PETSC_FALSE; 534*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscSectionSetChart(newCoordSection, hasCells ? cStartNew : vStartNew, vEndNew)); 535f2b8cce1SMatthew G. Knepley if (hasCells) { 536f2b8cce1SMatthew G. Knepley for (c = cStart; c < cEnd; ++c) { 537f2b8cce1SMatthew G. Knepley PetscInt cNew = DMPlexShiftPoint_Internal(c, depth, depthShift), dof; 538f2b8cce1SMatthew G. Knepley 539*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscSectionGetDof(coordSection, c, &dof)); 540*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscSectionSetDof(newCoordSection, cNew, dof)); 541*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscSectionSetFieldDof(newCoordSection, cNew, 0, dof)); 542f2b8cce1SMatthew G. Knepley } 543f2b8cce1SMatthew G. Knepley } 544cd0c2139SMatthew G Knepley for (v = vStartNew; v < vEndNew; ++v) { 545*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscSectionSetDof(newCoordSection, v, dim)); 546*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscSectionSetFieldDof(newCoordSection, v, 0, dim)); 547cd0c2139SMatthew G Knepley } 548*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscSectionSetUp(newCoordSection)); 549*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMSetCoordinateSection(dmNew, PETSC_DETERMINE, newCoordSection)); 550*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscSectionGetStorageSize(newCoordSection, &coordSize)); 551*5f80ce2aSJacob Faibussowitsch CHKERRQ(VecCreate(PETSC_COMM_SELF, &newCoordinates)); 552*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscObjectSetName((PetscObject) newCoordinates, "coordinates")); 553*5f80ce2aSJacob Faibussowitsch CHKERRQ(VecSetSizes(newCoordinates, coordSize, PETSC_DETERMINE)); 554*5f80ce2aSJacob Faibussowitsch CHKERRQ(VecSetBlockSize(newCoordinates, dim)); 555*5f80ce2aSJacob Faibussowitsch CHKERRQ(VecSetType(newCoordinates,VECSTANDARD)); 556*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMSetCoordinatesLocal(dmNew, newCoordinates)); 557*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMGetCoordinatesLocal(dm, &coordinates)); 558*5f80ce2aSJacob Faibussowitsch CHKERRQ(VecGetArray(coordinates, &coords)); 559*5f80ce2aSJacob Faibussowitsch CHKERRQ(VecGetArray(newCoordinates, &newCoords)); 560f2b8cce1SMatthew G. Knepley if (hasCells) { 561f2b8cce1SMatthew G. Knepley for (c = cStart; c < cEnd; ++c) { 562f2b8cce1SMatthew G. Knepley PetscInt cNew = DMPlexShiftPoint_Internal(c, depth, depthShift), dof, off, noff, d; 563f2b8cce1SMatthew G. Knepley 564*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscSectionGetDof(coordSection, c, &dof)); 565*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscSectionGetOffset(coordSection, c, &off)); 566*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscSectionGetOffset(newCoordSection, cNew, &noff)); 567f2b8cce1SMatthew G. Knepley for (d = 0; d < dof; ++d) newCoords[noff+d] = coords[off+d]; 568f2b8cce1SMatthew G. Knepley } 569f2b8cce1SMatthew G. Knepley } 570cd0c2139SMatthew G Knepley for (v = vStart; v < vEnd; ++v) { 571cd0c2139SMatthew G Knepley PetscInt dof, off, noff, d; 572cd0c2139SMatthew G Knepley 573*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscSectionGetDof(coordSection, v, &dof)); 574*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscSectionGetOffset(coordSection, v, &off)); 575*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscSectionGetOffset(newCoordSection, DMPlexShiftPoint_Internal(v, depth, depthShift), &noff)); 576f2b8cce1SMatthew G. Knepley for (d = 0; d < dof; ++d) newCoords[noff+d] = coords[off+d]; 577cd0c2139SMatthew G Knepley } 578*5f80ce2aSJacob Faibussowitsch CHKERRQ(VecRestoreArray(coordinates, &coords)); 579*5f80ce2aSJacob Faibussowitsch CHKERRQ(VecRestoreArray(newCoordinates, &newCoords)); 580*5f80ce2aSJacob Faibussowitsch CHKERRQ(VecDestroy(&newCoordinates)); 581*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscSectionDestroy(&newCoordSection)); 582cd0c2139SMatthew G Knepley PetscFunctionReturn(0); 583cd0c2139SMatthew G Knepley } 584cd0c2139SMatthew G Knepley 5850e33faafSMatthew G. Knepley static PetscErrorCode DMPlexShiftSF_Single(DM dm, PetscInt depthShift[], PetscSF sf, PetscSF sfNew) 586cd0c2139SMatthew G Knepley { 587cd0c2139SMatthew G Knepley const PetscSFNode *remotePoints; 588cd0c2139SMatthew G Knepley PetscSFNode *gremotePoints; 589cd0c2139SMatthew G Knepley const PetscInt *localPoints; 590cd0c2139SMatthew G Knepley PetscInt *glocalPoints, *newLocation, *newRemoteLocation; 5910e33faafSMatthew G. Knepley PetscInt numRoots, numLeaves, l, pStart, pEnd, depth = 0, totShift = 0; 592cd0c2139SMatthew G Knepley 593cd0c2139SMatthew G Knepley PetscFunctionBegin; 594*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexGetDepth(dm, &depth)); 595*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexGetChart(dm, &pStart, &pEnd)); 596*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscSFGetGraph(sf, &numRoots, &numLeaves, &localPoints, &remotePoints)); 5976e21efdcSToby Isaac totShift = DMPlexShiftPoint_Internal(pEnd, depth, depthShift) - pEnd; 598cd0c2139SMatthew G Knepley if (numRoots >= 0) { 599*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscMalloc2(numRoots, &newLocation, pEnd-pStart, &newRemoteLocation)); 6000e33faafSMatthew G. Knepley for (l = 0; l < numRoots; ++l) newLocation[l] = DMPlexShiftPoint_Internal(l, depth, depthShift); 601*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscSFBcastBegin(sf, MPIU_INT, newLocation, newRemoteLocation, MPI_REPLACE)); 602*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscSFBcastEnd(sf, MPIU_INT, newLocation, newRemoteLocation, MPI_REPLACE)); 603*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscMalloc1(numLeaves, &glocalPoints)); 604*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscMalloc1(numLeaves, &gremotePoints)); 605cd0c2139SMatthew G Knepley for (l = 0; l < numLeaves; ++l) { 6062582d50cSToby Isaac glocalPoints[l] = DMPlexShiftPoint_Internal(localPoints[l], depth, depthShift); 607cd0c2139SMatthew G Knepley gremotePoints[l].rank = remotePoints[l].rank; 608cd0c2139SMatthew G Knepley gremotePoints[l].index = newRemoteLocation[localPoints[l]]; 609cd0c2139SMatthew G Knepley } 610*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscFree2(newLocation, newRemoteLocation)); 611*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscSFSetGraph(sfNew, numRoots + totShift, numLeaves, glocalPoints, PETSC_OWN_POINTER, gremotePoints, PETSC_OWN_POINTER)); 6120e33faafSMatthew G. Knepley } 6130e33faafSMatthew G. Knepley PetscFunctionReturn(0); 6140e33faafSMatthew G. Knepley } 6150e33faafSMatthew G. Knepley 6160e33faafSMatthew G. Knepley static PetscErrorCode DMPlexShiftSF_Internal(DM dm, PetscInt depthShift[], DM dmNew) 6170e33faafSMatthew G. Knepley { 6180e33faafSMatthew G. Knepley PetscSF sfPoint, sfPointNew; 6190e33faafSMatthew G. Knepley PetscBool useNatural; 6200e33faafSMatthew G. Knepley 6210e33faafSMatthew G. Knepley PetscFunctionBegin; 6220e33faafSMatthew G. Knepley /* Step 9: Convert pointSF */ 623*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMGetPointSF(dm, &sfPoint)); 624*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMGetPointSF(dmNew, &sfPointNew)); 625*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexShiftSF_Single(dm, depthShift, sfPoint, sfPointNew)); 6260e33faafSMatthew G. Knepley /* Step 9b: Convert naturalSF */ 627*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMGetUseNatural(dm, &useNatural)); 6280e33faafSMatthew G. Knepley if (useNatural) { 6290e33faafSMatthew G. Knepley PetscSF sfNat, sfNatNew; 6300e33faafSMatthew G. Knepley 631*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMSetUseNatural(dmNew, useNatural)); 632*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMGetNaturalSF(dm, &sfNat)); 633*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMGetNaturalSF(dmNew, &sfNatNew)); 634*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexShiftSF_Single(dm, depthShift, sfNat, sfNatNew)); 635cd0c2139SMatthew G Knepley } 636cd0c2139SMatthew G Knepley PetscFunctionReturn(0); 637cd0c2139SMatthew G Knepley } 638cd0c2139SMatthew G Knepley 639cd0c2139SMatthew G Knepley static PetscErrorCode DMPlexShiftLabels_Internal(DM dm, PetscInt depthShift[], DM dmNew) 640cd0c2139SMatthew G Knepley { 641d56405f8SMatthew G. Knepley PetscInt depth = 0, numLabels, l; 642cd0c2139SMatthew G Knepley 643cd0c2139SMatthew G Knepley PetscFunctionBegin; 644*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexGetDepth(dm, &depth)); 645cd0c2139SMatthew G Knepley /* Step 10: Convert labels */ 646*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMGetNumLabels(dm, &numLabels)); 647cd0c2139SMatthew G Knepley for (l = 0; l < numLabels; ++l) { 648cd0c2139SMatthew G Knepley DMLabel label, newlabel; 649cd0c2139SMatthew G Knepley const char *lname; 650fa8e8ae5SToby Isaac PetscBool isDepth, isDim; 651cd0c2139SMatthew G Knepley IS valueIS; 652cd0c2139SMatthew G Knepley const PetscInt *values; 653cd0c2139SMatthew G Knepley PetscInt numValues, val; 654cd0c2139SMatthew G Knepley 655*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMGetLabelName(dm, l, &lname)); 656*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscStrcmp(lname, "depth", &isDepth)); 657cd0c2139SMatthew G Knepley if (isDepth) continue; 658*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscStrcmp(lname, "dim", &isDim)); 659fa8e8ae5SToby Isaac if (isDim) continue; 660*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMCreateLabel(dmNew, lname)); 661*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMGetLabel(dm, lname, &label)); 662*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMGetLabel(dmNew, lname, &newlabel)); 663*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMLabelGetDefaultValue(label,&val)); 664*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMLabelSetDefaultValue(newlabel,val)); 665*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMLabelGetValueIS(label, &valueIS)); 666*5f80ce2aSJacob Faibussowitsch CHKERRQ(ISGetLocalSize(valueIS, &numValues)); 667*5f80ce2aSJacob Faibussowitsch CHKERRQ(ISGetIndices(valueIS, &values)); 668cd0c2139SMatthew G Knepley for (val = 0; val < numValues; ++val) { 669cd0c2139SMatthew G Knepley IS pointIS; 670cd0c2139SMatthew G Knepley const PetscInt *points; 671cd0c2139SMatthew G Knepley PetscInt numPoints, p; 672cd0c2139SMatthew G Knepley 673*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMLabelGetStratumIS(label, values[val], &pointIS)); 674*5f80ce2aSJacob Faibussowitsch CHKERRQ(ISGetLocalSize(pointIS, &numPoints)); 675*5f80ce2aSJacob Faibussowitsch CHKERRQ(ISGetIndices(pointIS, &points)); 676cd0c2139SMatthew G Knepley for (p = 0; p < numPoints; ++p) { 6772582d50cSToby Isaac const PetscInt newpoint = DMPlexShiftPoint_Internal(points[p], depth, depthShift); 678cd0c2139SMatthew G Knepley 679*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMLabelSetValue(newlabel, newpoint, values[val])); 680cd0c2139SMatthew G Knepley } 681*5f80ce2aSJacob Faibussowitsch CHKERRQ(ISRestoreIndices(pointIS, &points)); 682*5f80ce2aSJacob Faibussowitsch CHKERRQ(ISDestroy(&pointIS)); 683cd0c2139SMatthew G Knepley } 684*5f80ce2aSJacob Faibussowitsch CHKERRQ(ISRestoreIndices(valueIS, &values)); 685*5f80ce2aSJacob Faibussowitsch CHKERRQ(ISDestroy(&valueIS)); 686cd0c2139SMatthew G Knepley } 687d56405f8SMatthew G. Knepley PetscFunctionReturn(0); 688d56405f8SMatthew G. Knepley } 689d56405f8SMatthew G. Knepley 690d56405f8SMatthew G. Knepley static PetscErrorCode DMPlexCreateVTKLabel_Internal(DM dm, PetscBool createGhostLabel, DM dmNew) 691d56405f8SMatthew G. Knepley { 692d56405f8SMatthew G. Knepley PetscSF sfPoint; 693d56405f8SMatthew G. Knepley DMLabel vtkLabel, ghostLabel = NULL; 694d56405f8SMatthew G. Knepley const PetscSFNode *leafRemote; 695d56405f8SMatthew G. Knepley const PetscInt *leafLocal; 696d56405f8SMatthew G. Knepley PetscInt cellHeight, cStart, cEnd, c, fStart, fEnd, f, numLeaves, l; 697d56405f8SMatthew G. Knepley PetscMPIInt rank; 698d56405f8SMatthew G. Knepley 699d56405f8SMatthew G. Knepley PetscFunctionBegin; 700cd0c2139SMatthew G Knepley /* Step 11: Make label for output (vtk) and to mark ghost points (ghost) */ 701*5f80ce2aSJacob Faibussowitsch CHKERRMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)dm), &rank)); 702*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMGetPointSF(dm, &sfPoint)); 703*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexGetVTKCellHeight(dmNew, &cellHeight)); 704*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexGetHeightStratum(dm, cellHeight, &cStart, &cEnd)); 705*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscSFGetGraph(sfPoint, NULL, &numLeaves, &leafLocal, &leafRemote)); 706*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMCreateLabel(dmNew, "vtk")); 707*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMGetLabel(dmNew, "vtk", &vtkLabel)); 708d56405f8SMatthew G. Knepley if (createGhostLabel) { 709*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMCreateLabel(dmNew, "ghost")); 710*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMGetLabel(dmNew, "ghost", &ghostLabel)); 711d56405f8SMatthew G. Knepley } 712cd0c2139SMatthew G Knepley for (l = 0, c = cStart; l < numLeaves && c < cEnd; ++l, ++c) { 713cd0c2139SMatthew G Knepley for (; c < leafLocal[l] && c < cEnd; ++c) { 714*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMLabelSetValue(vtkLabel, c, 1)); 715cd0c2139SMatthew G Knepley } 716cd0c2139SMatthew G Knepley if (leafLocal[l] >= cEnd) break; 717cd0c2139SMatthew G Knepley if (leafRemote[l].rank == rank) { 718*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMLabelSetValue(vtkLabel, c, 1)); 719d56405f8SMatthew G. Knepley } else if (ghostLabel) { 720*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMLabelSetValue(ghostLabel, c, 2)); 721cd0c2139SMatthew G Knepley } 722cd0c2139SMatthew G Knepley } 723cd0c2139SMatthew G Knepley for (; c < cEnd; ++c) { 724*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMLabelSetValue(vtkLabel, c, 1)); 725cd0c2139SMatthew G Knepley } 726d56405f8SMatthew G. Knepley if (ghostLabel) { 727*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexGetHeightStratum(dmNew, 1, &fStart, &fEnd)); 728cd0c2139SMatthew G Knepley for (f = fStart; f < fEnd; ++f) { 729cd0c2139SMatthew G Knepley PetscInt numCells; 730cd0c2139SMatthew G Knepley 731*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexGetSupportSize(dmNew, f, &numCells)); 732cd0c2139SMatthew G Knepley if (numCells < 2) { 733*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMLabelSetValue(ghostLabel, f, 1)); 734cd0c2139SMatthew G Knepley } else { 735cd0c2139SMatthew G Knepley const PetscInt *cells = NULL; 736cd0c2139SMatthew G Knepley PetscInt vA, vB; 737cd0c2139SMatthew G Knepley 738*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexGetSupport(dmNew, f, &cells)); 739*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMLabelGetValue(vtkLabel, cells[0], &vA)); 740*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMLabelGetValue(vtkLabel, cells[1], &vB)); 741*5f80ce2aSJacob Faibussowitsch if (vA != 1 && vB != 1) CHKERRQ(DMLabelSetValue(ghostLabel, f, 1)); 742cd0c2139SMatthew G Knepley } 743cd0c2139SMatthew G Knepley } 744d56405f8SMatthew G. Knepley } 745cd0c2139SMatthew G Knepley PetscFunctionReturn(0); 746cd0c2139SMatthew G Knepley } 747cd0c2139SMatthew G Knepley 748ca04dac2SToby Isaac static PetscErrorCode DMPlexShiftTree_Internal(DM dm, PetscInt depthShift[], DM dmNew) 749ca04dac2SToby Isaac { 750ca04dac2SToby Isaac DM refTree; 751ca04dac2SToby Isaac PetscSection pSec; 752ca04dac2SToby Isaac PetscInt *parents, *childIDs; 753ca04dac2SToby Isaac 754ca04dac2SToby Isaac PetscFunctionBegin; 755*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexGetReferenceTree(dm,&refTree)); 756*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexSetReferenceTree(dmNew,refTree)); 757*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexGetTree(dm,&pSec,&parents,&childIDs,NULL,NULL)); 758ca04dac2SToby Isaac if (pSec) { 7592582d50cSToby Isaac PetscInt p, pStart, pEnd, *parentsShifted, pStartShifted, pEndShifted, depth; 760fb4630b5SToby Isaac PetscInt *childIDsShifted; 761ca04dac2SToby Isaac PetscSection pSecShifted; 762ca04dac2SToby Isaac 763*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscSectionGetChart(pSec,&pStart,&pEnd)); 764*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexGetDepth(dm,&depth)); 7652582d50cSToby Isaac pStartShifted = DMPlexShiftPoint_Internal(pStart,depth,depthShift); 7662582d50cSToby Isaac pEndShifted = DMPlexShiftPoint_Internal(pEnd,depth,depthShift); 767*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscMalloc2(pEndShifted - pStartShifted,&parentsShifted,pEndShifted-pStartShifted,&childIDsShifted)); 768*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscSectionCreate(PetscObjectComm((PetscObject)dmNew),&pSecShifted)); 769*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscSectionSetChart(pSecShifted,pStartShifted,pEndShifted)); 770ca04dac2SToby Isaac for (p = pStartShifted; p < pEndShifted; p++) { 771fb4630b5SToby Isaac /* start off assuming no children */ 772*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscSectionSetDof(pSecShifted,p,0)); 773fb4630b5SToby Isaac } 774fb4630b5SToby Isaac for (p = pStart; p < pEnd; p++) { 775fb4630b5SToby Isaac PetscInt dof; 776fb4630b5SToby Isaac PetscInt pNew = DMPlexShiftPoint_Internal(p,depth,depthShift); 777ca04dac2SToby Isaac 778*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscSectionGetDof(pSec,p,&dof)); 779*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscSectionSetDof(pSecShifted,pNew,dof)); 780ca04dac2SToby Isaac } 781*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscSectionSetUp(pSecShifted)); 782fb4630b5SToby Isaac for (p = pStart; p < pEnd; p++) { 783fb4630b5SToby Isaac PetscInt dof; 784fb4630b5SToby Isaac PetscInt pNew = DMPlexShiftPoint_Internal(p,depth,depthShift); 785fb4630b5SToby Isaac 786*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscSectionGetDof(pSec,p,&dof)); 787fb4630b5SToby Isaac if (dof) { 788fb4630b5SToby Isaac PetscInt off, offNew; 789fb4630b5SToby Isaac 790*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscSectionGetOffset(pSec,p,&off)); 791*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscSectionGetOffset(pSecShifted,pNew,&offNew)); 792fb4630b5SToby Isaac parentsShifted[offNew] = DMPlexShiftPoint_Internal(parents[off],depth,depthShift); 793fb4630b5SToby Isaac childIDsShifted[offNew] = childIDs[off]; 794fb4630b5SToby Isaac } 795fb4630b5SToby Isaac } 796*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexSetTree(dmNew,pSecShifted,parentsShifted,childIDsShifted)); 797*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscFree2(parentsShifted,childIDsShifted)); 798*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscSectionDestroy(&pSecShifted)); 799ca04dac2SToby Isaac } 800ca04dac2SToby Isaac PetscFunctionReturn(0); 801ca04dac2SToby Isaac } 802ca04dac2SToby Isaac 803cd0c2139SMatthew G Knepley static PetscErrorCode DMPlexConstructGhostCells_Internal(DM dm, DMLabel label, PetscInt *numGhostCells, DM gdm) 804cd0c2139SMatthew G Knepley { 805da97024aSMatthew G. Knepley PetscSF sf; 806cd0c2139SMatthew G Knepley IS valueIS; 807da97024aSMatthew G. Knepley const PetscInt *values, *leaves; 808cd0c2139SMatthew G Knepley PetscInt *depthShift; 8092582d50cSToby Isaac PetscInt d, depth = 0, nleaves, loc, Ng, numFS, fs, fStart, fEnd, ghostCell, cEnd, c; 81090b157c4SStefano Zampini PetscBool isper; 81190b157c4SStefano Zampini const PetscReal *maxCell, *L; 81290b157c4SStefano Zampini const DMBoundaryType *bd; 813cd0c2139SMatthew G Knepley 814cd0c2139SMatthew G Knepley PetscFunctionBegin; 815*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMGetPointSF(dm, &sf)); 816*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscSFGetGraph(sf, NULL, &nleaves, &leaves, NULL)); 817da97024aSMatthew G. Knepley nleaves = PetscMax(0, nleaves); 818*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexGetHeightStratum(dm, 1, &fStart, &fEnd)); 819cd0c2139SMatthew G Knepley /* Count ghost cells */ 820*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMLabelGetValueIS(label, &valueIS)); 821*5f80ce2aSJacob Faibussowitsch CHKERRQ(ISGetLocalSize(valueIS, &numFS)); 822*5f80ce2aSJacob Faibussowitsch CHKERRQ(ISGetIndices(valueIS, &values)); 8234a6cfa73SMatthew G. Knepley Ng = 0; 824cd0c2139SMatthew G Knepley for (fs = 0; fs < numFS; ++fs) { 82546c796b9SMatthew G. Knepley IS faceIS; 82646c796b9SMatthew G. Knepley const PetscInt *faces; 82746c796b9SMatthew G. Knepley PetscInt numFaces, f, numBdFaces = 0; 828cd0c2139SMatthew G Knepley 829*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMLabelGetStratumIS(label, values[fs], &faceIS)); 830*5f80ce2aSJacob Faibussowitsch CHKERRQ(ISGetLocalSize(faceIS, &numFaces)); 831*5f80ce2aSJacob Faibussowitsch CHKERRQ(ISGetIndices(faceIS, &faces)); 83246c796b9SMatthew G. Knepley for (f = 0; f < numFaces; ++f) { 833ca04dac2SToby Isaac PetscInt numChildren; 834ca04dac2SToby Isaac 835*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscFindInt(faces[f], nleaves, leaves, &loc)); 836*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexGetTreeChildren(dm,faces[f],&numChildren,NULL)); 837ca04dac2SToby Isaac /* non-local and ancestors points don't get to register ghosts */ 838ca04dac2SToby Isaac if (loc >= 0 || numChildren) continue; 83946c796b9SMatthew G. Knepley if ((faces[f] >= fStart) && (faces[f] < fEnd)) ++numBdFaces; 84046c796b9SMatthew G. Knepley } 8414a6cfa73SMatthew G. Knepley Ng += numBdFaces; 842*5f80ce2aSJacob Faibussowitsch CHKERRQ(ISRestoreIndices(faceIS, &faces)); 843*5f80ce2aSJacob Faibussowitsch CHKERRQ(ISDestroy(&faceIS)); 844cd0c2139SMatthew G Knepley } 845*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexGetDepth(dm, &depth)); 846*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscMalloc1(2*(depth+1), &depthShift)); 8472582d50cSToby Isaac for (d = 0; d <= depth; d++) { 84859eef20bSToby Isaac PetscInt dEnd; 8492582d50cSToby Isaac 850*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexGetDepthStratum(dm,d,NULL,&dEnd)); 85159eef20bSToby Isaac depthShift[2*d] = dEnd; 8522582d50cSToby Isaac depthShift[2*d+1] = 0; 8532582d50cSToby Isaac } 8542582d50cSToby Isaac if (depth >= 0) depthShift[2*depth+1] = Ng; 855*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexShiftPointSetUp_Internal(depth,depthShift)); 856*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexShiftSizes_Internal(dm, depthShift, gdm)); 857cd0c2139SMatthew G Knepley /* Step 3: Set cone/support sizes for new points */ 858*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexGetHeightStratum(dm, 0, NULL, &cEnd)); 8594a6cfa73SMatthew G. Knepley for (c = cEnd; c < cEnd + Ng; ++c) { 860*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexSetConeSize(gdm, c, 1)); 861cd0c2139SMatthew G Knepley } 862cd0c2139SMatthew G Knepley for (fs = 0; fs < numFS; ++fs) { 863cd0c2139SMatthew G Knepley IS faceIS; 864cd0c2139SMatthew G Knepley const PetscInt *faces; 865cd0c2139SMatthew G Knepley PetscInt numFaces, f; 866cd0c2139SMatthew G Knepley 867*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMLabelGetStratumIS(label, values[fs], &faceIS)); 868*5f80ce2aSJacob Faibussowitsch CHKERRQ(ISGetLocalSize(faceIS, &numFaces)); 869*5f80ce2aSJacob Faibussowitsch CHKERRQ(ISGetIndices(faceIS, &faces)); 870cd0c2139SMatthew G Knepley for (f = 0; f < numFaces; ++f) { 871ca04dac2SToby Isaac PetscInt size, numChildren; 872cd0c2139SMatthew G Knepley 873*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscFindInt(faces[f], nleaves, leaves, &loc)); 874*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexGetTreeChildren(dm,faces[f],&numChildren,NULL)); 875ca04dac2SToby Isaac if (loc >= 0 || numChildren) continue; 87646c796b9SMatthew G. Knepley if ((faces[f] < fStart) || (faces[f] >= fEnd)) continue; 877*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexGetSupportSize(dm, faces[f], &size)); 8782c71b3e2SJacob Faibussowitsch PetscCheckFalse(size != 1,PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "DM has boundary face %d with %d support cells", faces[f], size); 879*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexSetSupportSize(gdm, faces[f] + Ng, 2)); 880cd0c2139SMatthew G Knepley } 881*5f80ce2aSJacob Faibussowitsch CHKERRQ(ISRestoreIndices(faceIS, &faces)); 882*5f80ce2aSJacob Faibussowitsch CHKERRQ(ISDestroy(&faceIS)); 883cd0c2139SMatthew G Knepley } 884cd0c2139SMatthew G Knepley /* Step 4: Setup ghosted DM */ 885*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMSetUp(gdm)); 886*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexShiftPoints_Internal(dm, depthShift, gdm)); 887cd0c2139SMatthew G Knepley /* Step 6: Set cones and supports for new points */ 888cd0c2139SMatthew G Knepley ghostCell = cEnd; 889cd0c2139SMatthew G Knepley for (fs = 0; fs < numFS; ++fs) { 890cd0c2139SMatthew G Knepley IS faceIS; 891cd0c2139SMatthew G Knepley const PetscInt *faces; 892cd0c2139SMatthew G Knepley PetscInt numFaces, f; 893cd0c2139SMatthew G Knepley 894*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMLabelGetStratumIS(label, values[fs], &faceIS)); 895*5f80ce2aSJacob Faibussowitsch CHKERRQ(ISGetLocalSize(faceIS, &numFaces)); 896*5f80ce2aSJacob Faibussowitsch CHKERRQ(ISGetIndices(faceIS, &faces)); 89746c796b9SMatthew G. Knepley for (f = 0; f < numFaces; ++f) { 898ca04dac2SToby Isaac PetscInt newFace = faces[f] + Ng, numChildren; 899cd0c2139SMatthew G Knepley 900*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscFindInt(faces[f], nleaves, leaves, &loc)); 901*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexGetTreeChildren(dm,faces[f],&numChildren,NULL)); 902ca04dac2SToby Isaac if (loc >= 0 || numChildren) continue; 90346c796b9SMatthew G. Knepley if ((faces[f] < fStart) || (faces[f] >= fEnd)) continue; 904*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexSetCone(gdm, ghostCell, &newFace)); 905*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexInsertSupport(gdm, newFace, 1, ghostCell)); 90646c796b9SMatthew G. Knepley ++ghostCell; 907cd0c2139SMatthew G Knepley } 908*5f80ce2aSJacob Faibussowitsch CHKERRQ(ISRestoreIndices(faceIS, &faces)); 909*5f80ce2aSJacob Faibussowitsch CHKERRQ(ISDestroy(&faceIS)); 910cd0c2139SMatthew G Knepley } 911*5f80ce2aSJacob Faibussowitsch CHKERRQ(ISRestoreIndices(valueIS, &values)); 912*5f80ce2aSJacob Faibussowitsch CHKERRQ(ISDestroy(&valueIS)); 913*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexShiftCoordinates_Internal(dm, depthShift, gdm)); 914*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexShiftSF_Internal(dm, depthShift, gdm)); 915*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexShiftLabels_Internal(dm, depthShift, gdm)); 916*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexCreateVTKLabel_Internal(dm, PETSC_TRUE, gdm)); 917*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexShiftTree_Internal(dm, depthShift, gdm)); 918*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscFree(depthShift)); 919412e9a14SMatthew G. Knepley for (c = cEnd; c < cEnd + Ng; ++c) { 920*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexSetCellType(gdm, c, DM_POLYTOPE_FV_GHOST)); 921412e9a14SMatthew G. Knepley } 922966c7b3fSMatthew G. Knepley /* Step 7: Periodicity */ 923*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMGetPeriodicity(dm, &isper, &maxCell, &L, &bd)); 924*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMSetPeriodicity(gdm, isper, maxCell, L, bd)); 9254a6cfa73SMatthew G. Knepley if (numGhostCells) *numGhostCells = Ng; 926cd0c2139SMatthew G Knepley PetscFunctionReturn(0); 927cd0c2139SMatthew G Knepley } 928cd0c2139SMatthew G Knepley 929cd0c2139SMatthew G Knepley /*@C 930cd0c2139SMatthew G Knepley DMPlexConstructGhostCells - Construct ghost cells which connect to every boundary face 931cd0c2139SMatthew G Knepley 932cd0c2139SMatthew G Knepley Collective on dm 933cd0c2139SMatthew G Knepley 934cd0c2139SMatthew G Knepley Input Parameters: 935cd0c2139SMatthew G Knepley + dm - The original DM 936cd0c2139SMatthew G Knepley - labelName - The label specifying the boundary faces, or "Face Sets" if this is NULL 937cd0c2139SMatthew G Knepley 938cd0c2139SMatthew G Knepley Output Parameters: 939cd0c2139SMatthew G Knepley + numGhostCells - The number of ghost cells added to the DM 940cd0c2139SMatthew G Knepley - dmGhosted - The new DM 941cd0c2139SMatthew G Knepley 942cd0c2139SMatthew G Knepley Note: If no label exists of that name, one will be created marking all boundary faces 943cd0c2139SMatthew G Knepley 944cd0c2139SMatthew G Knepley Level: developer 945cd0c2139SMatthew G Knepley 946cd0c2139SMatthew G Knepley .seealso: DMCreate() 94731266bc0SMatthew G. Knepley @*/ 948cd0c2139SMatthew G Knepley PetscErrorCode DMPlexConstructGhostCells(DM dm, const char labelName[], PetscInt *numGhostCells, DM *dmGhosted) 949cd0c2139SMatthew G Knepley { 950cd0c2139SMatthew G Knepley DM gdm; 951cd0c2139SMatthew G Knepley DMLabel label; 952cd0c2139SMatthew G Knepley const char *name = labelName ? labelName : "Face Sets"; 953412e9a14SMatthew G. Knepley PetscInt dim, Ng = 0; 954b0441da4SMatthew G. Knepley PetscBool useCone, useClosure; 955cd0c2139SMatthew G Knepley 956cd0c2139SMatthew G Knepley PetscFunctionBegin; 957cd0c2139SMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 9584a6cfa73SMatthew G. Knepley if (numGhostCells) PetscValidPointer(numGhostCells, 3); 959cd0c2139SMatthew G Knepley PetscValidPointer(dmGhosted, 4); 960*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMCreate(PetscObjectComm((PetscObject)dm), &gdm)); 961*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMSetType(gdm, DMPLEX)); 962*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMGetDimension(dm, &dim)); 963*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMSetDimension(gdm, dim)); 964*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMGetBasicAdjacency(dm, &useCone, &useClosure)); 965*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMSetBasicAdjacency(gdm, useCone, useClosure)); 966*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMGetLabel(dm, name, &label)); 967cd0c2139SMatthew G Knepley if (!label) { 968cd0c2139SMatthew G Knepley /* Get label for boundary faces */ 969*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMCreateLabel(dm, name)); 970*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMGetLabel(dm, name, &label)); 971*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexMarkBoundaryFaces(dm, 1, label)); 972cd0c2139SMatthew G Knepley } 973*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexConstructGhostCells_Internal(dm, label, &Ng, gdm)); 974*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMCopyDisc(dm, gdm)); 975*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexCopy_Internal(dm, PETSC_TRUE, gdm)); 976cad26855SMatthew G. Knepley gdm->setfromoptionscalled = dm->setfromoptionscalled; 977d80ece95SMatthew G. Knepley if (numGhostCells) *numGhostCells = Ng; 978cd0c2139SMatthew G Knepley *dmGhosted = gdm; 979cd0c2139SMatthew G Knepley PetscFunctionReturn(0); 980cd0c2139SMatthew G Knepley } 981cd0c2139SMatthew G Knepley 982607ab7a9SMatthew G. Knepley /* 983faedd622SMatthew G. Knepley We are adding three kinds of points here: 984607ab7a9SMatthew G. Knepley Replicated: Copies of points which exist in the mesh, such as vertices identified across a fault 985faedd622SMatthew G. Knepley Non-replicated: Points which exist on the fault, but are not replicated 986607ab7a9SMatthew G. Knepley Hybrid: Entirely new points, such as cohesive cells 987a6ae58d1SMatthew G. Knepley 988a6ae58d1SMatthew G. Knepley When creating subsequent cohesive cells, we shift the old hybrid cells to the end of the numbering at 989a6ae58d1SMatthew G. Knepley each depth so that the new split/hybrid points can be inserted as a block. 990607ab7a9SMatthew G. Knepley */ 9917db7e0a7SMatthew G. Knepley static PetscErrorCode DMPlexConstructCohesiveCells_Internal(DM dm, DMLabel label, DMLabel splitLabel, DM sdm) 992cd0c2139SMatthew G Knepley { 993cd0c2139SMatthew G Knepley MPI_Comm comm; 994607ab7a9SMatthew G. Knepley IS valueIS; 995607ab7a9SMatthew G. Knepley PetscInt numSP = 0; /* The number of depths for which we have replicated points */ 996607ab7a9SMatthew G. Knepley const PetscInt *values; /* List of depths for which we have replicated points */ 99718c5995bSMatthew G. Knepley IS *splitIS; 99818c5995bSMatthew G. Knepley IS *unsplitIS; 999607ab7a9SMatthew G. Knepley PetscInt *numSplitPoints; /* The number of replicated points at each depth */ 100018c5995bSMatthew G. Knepley PetscInt *numUnsplitPoints; /* The number of non-replicated points at each depth which still give rise to hybrid points */ 100136dbac82SMatthew G. Knepley PetscInt *numHybridPoints; /* The number of new hybrid points at each depth */ 100236dbac82SMatthew G. Knepley PetscInt *numHybridPointsOld; /* The number of existing hybrid points at each depth */ 1003607ab7a9SMatthew G. Knepley const PetscInt **splitPoints; /* Replicated points for each depth */ 100418c5995bSMatthew G. Knepley const PetscInt **unsplitPoints; /* Non-replicated points for each depth */ 1005cd0c2139SMatthew G Knepley PetscSection coordSection; 1006cd0c2139SMatthew G Knepley Vec coordinates; 1007cd0c2139SMatthew G Knepley PetscScalar *coords; 1008a6ae58d1SMatthew G. Knepley PetscInt *depthMax; /* The first hybrid point at each depth in the original mesh */ 1009a6ae58d1SMatthew G. Knepley PetscInt *depthEnd; /* The point limit at each depth in the original mesh */ 1010607ab7a9SMatthew G. Knepley PetscInt *depthShift; /* Number of replicated+hybrid points at each depth */ 1011607ab7a9SMatthew G. Knepley PetscInt *pMaxNew; /* The first replicated point at each depth in the new mesh, hybrids come after this */ 1012607ab7a9SMatthew G. Knepley PetscInt *coneNew, *coneONew, *supportNew; 101318c5995bSMatthew G. Knepley PetscInt shift = 100, shift2 = 200, depth = 0, dep, dim, d, sp, maxConeSize, maxSupportSize, maxConeSizeNew, maxSupportSizeNew, numLabels, vStart, vEnd, pEnd, p, v; 1014cd0c2139SMatthew G Knepley 1015cd0c2139SMatthew G Knepley PetscFunctionBegin; 1016*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscObjectGetComm((PetscObject)dm,&comm)); 1017*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMGetDimension(dm, &dim)); 1018*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexGetDepth(dm, &depth)); 1019*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexGetDepthStratum(dm, 0, &vStart, &vEnd)); 1020412e9a14SMatthew G. Knepley /* We do not want this label automatically computed, instead we compute it here */ 1021*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMCreateLabel(sdm, "celltype")); 1022cd0c2139SMatthew G Knepley /* Count split points and add cohesive cells */ 1023*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexGetMaxSizes(dm, &maxConeSize, &maxSupportSize)); 1024*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscMalloc5(depth+1,&depthMax,depth+1,&depthEnd,2*(depth+1),&depthShift,depth+1,&pMaxNew,depth+1,&numHybridPointsOld)); 1025*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscMalloc7(depth+1,&splitIS,depth+1,&unsplitIS,depth+1,&numSplitPoints,depth+1,&numUnsplitPoints,depth+1,&numHybridPoints,depth+1,&splitPoints,depth+1,&unsplitPoints)); 1026607ab7a9SMatthew G. Knepley for (d = 0; d <= depth; ++d) { 1027*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexGetDepthStratum(dm, d, NULL, &pMaxNew[d])); 1028*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexGetTensorPrismBounds_Internal(dm, d, &depthMax[d], NULL)); 1029a6ae58d1SMatthew G. Knepley depthEnd[d] = pMaxNew[d]; 1030a6ae58d1SMatthew G. Knepley depthMax[d] = depthMax[d] < 0 ? depthEnd[d] : depthMax[d]; 1031607ab7a9SMatthew G. Knepley numSplitPoints[d] = 0; 103218c5995bSMatthew G. Knepley numUnsplitPoints[d] = 0; 1033607ab7a9SMatthew G. Knepley numHybridPoints[d] = 0; 1034a6ae58d1SMatthew G. Knepley numHybridPointsOld[d] = depthMax[d] < 0 ? 0 : depthEnd[d] - depthMax[d]; 1035607ab7a9SMatthew G. Knepley splitPoints[d] = NULL; 103618c5995bSMatthew G. Knepley unsplitPoints[d] = NULL; 103718c5995bSMatthew G. Knepley splitIS[d] = NULL; 103818c5995bSMatthew G. Knepley unsplitIS[d] = NULL; 103959eef20bSToby Isaac /* we are shifting the existing hybrid points with the stratum behind them, so 104059eef20bSToby Isaac * the split comes at the end of the normal points, i.e., at depthMax[d] */ 104159eef20bSToby Isaac depthShift[2*d] = depthMax[d]; 104259eef20bSToby Isaac depthShift[2*d+1] = 0; 1043607ab7a9SMatthew G. Knepley } 1044cd0c2139SMatthew G Knepley if (label) { 1045*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMLabelGetValueIS(label, &valueIS)); 1046*5f80ce2aSJacob Faibussowitsch CHKERRQ(ISGetLocalSize(valueIS, &numSP)); 1047*5f80ce2aSJacob Faibussowitsch CHKERRQ(ISGetIndices(valueIS, &values)); 1048cd0c2139SMatthew G Knepley } 1049cd0c2139SMatthew G Knepley for (sp = 0; sp < numSP; ++sp) { 1050cd0c2139SMatthew G Knepley const PetscInt dep = values[sp]; 1051cd0c2139SMatthew G Knepley 1052cd0c2139SMatthew G Knepley if ((dep < 0) || (dep > depth)) continue; 1053*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMLabelGetStratumIS(label, dep, &splitIS[dep])); 105418c5995bSMatthew G. Knepley if (splitIS[dep]) { 1055*5f80ce2aSJacob Faibussowitsch CHKERRQ(ISGetLocalSize(splitIS[dep], &numSplitPoints[dep])); 1056*5f80ce2aSJacob Faibussowitsch CHKERRQ(ISGetIndices(splitIS[dep], &splitPoints[dep])); 105718c5995bSMatthew G. Knepley } 1058*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMLabelGetStratumIS(label, shift2+dep, &unsplitIS[dep])); 105918c5995bSMatthew G. Knepley if (unsplitIS[dep]) { 1060*5f80ce2aSJacob Faibussowitsch CHKERRQ(ISGetLocalSize(unsplitIS[dep], &numUnsplitPoints[dep])); 1061*5f80ce2aSJacob Faibussowitsch CHKERRQ(ISGetIndices(unsplitIS[dep], &unsplitPoints[dep])); 1062cd0c2139SMatthew G Knepley } 1063cd0c2139SMatthew G Knepley } 1064607ab7a9SMatthew G. Knepley /* Calculate number of hybrid points */ 106518c5995bSMatthew G. Knepley for (d = 1; d <= depth; ++d) numHybridPoints[d] = numSplitPoints[d-1] + numUnsplitPoints[d-1]; /* There is a hybrid cell/face/edge for every split face/edge/vertex */ 10662582d50cSToby Isaac for (d = 0; d <= depth; ++d) depthShift[2*d+1] = numSplitPoints[d] + numHybridPoints[d]; 1067*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexShiftPointSetUp_Internal(depth,depthShift)); 106859eef20bSToby Isaac /* the end of the points in this stratum that come before the new points: 106959eef20bSToby Isaac * shifting pMaxNew[d] gets the new start of the next stratum, then count back the old hybrid points and the newly 107059eef20bSToby Isaac * added points */ 10712582d50cSToby Isaac for (d = 0; d <= depth; ++d) pMaxNew[d] = DMPlexShiftPoint_Internal(pMaxNew[d],depth,depthShift) - (numHybridPointsOld[d] + numSplitPoints[d] + numHybridPoints[d]); 1072*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexShiftSizes_Internal(dm, depthShift, sdm)); 1073cd0c2139SMatthew G Knepley /* Step 3: Set cone/support sizes for new points */ 1074cd0c2139SMatthew G Knepley for (dep = 0; dep <= depth; ++dep) { 1075cd0c2139SMatthew G Knepley for (p = 0; p < numSplitPoints[dep]; ++p) { 1076cd0c2139SMatthew G Knepley const PetscInt oldp = splitPoints[dep][p]; 10772582d50cSToby Isaac const PetscInt newp = DMPlexShiftPoint_Internal(oldp, depth, depthShift) /*oldp + depthOffset[dep]*/; 10784c367dbcSMatthew G. Knepley const PetscInt splitp = p + pMaxNew[dep]; 1079cd0c2139SMatthew G Knepley const PetscInt *support; 1080394c2f0fSMatthew G. Knepley DMPolytopeType ct; 10814c367dbcSMatthew G. Knepley PetscInt coneSize, supportSize, qf, qn, qp, e; 1082cd0c2139SMatthew G Knepley 1083*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexGetConeSize(dm, oldp, &coneSize)); 1084*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexSetConeSize(sdm, splitp, coneSize)); 1085*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexGetSupportSize(dm, oldp, &supportSize)); 1086*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexSetSupportSize(sdm, splitp, supportSize)); 1087*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexGetCellType(dm, oldp, &ct)); 1088*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexSetCellType(sdm, splitp, ct)); 1089cd0c2139SMatthew G Knepley if (dep == depth-1) { 10904c367dbcSMatthew G. Knepley const PetscInt hybcell = p + pMaxNew[dep+1] + numSplitPoints[dep+1]; 10914c367dbcSMatthew G. Knepley 1092cd0c2139SMatthew G Knepley /* Add cohesive cells, they are prisms */ 1093*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexSetConeSize(sdm, hybcell, 2 + coneSize)); 1094412e9a14SMatthew G. Knepley switch (coneSize) { 1095*5f80ce2aSJacob Faibussowitsch case 2: CHKERRQ(DMPlexSetCellType(sdm, hybcell, DM_POLYTOPE_SEG_PRISM_TENSOR));break; 1096*5f80ce2aSJacob Faibussowitsch case 3: CHKERRQ(DMPlexSetCellType(sdm, hybcell, DM_POLYTOPE_TRI_PRISM_TENSOR));break; 1097*5f80ce2aSJacob Faibussowitsch case 4: CHKERRQ(DMPlexSetCellType(sdm, hybcell, DM_POLYTOPE_QUAD_PRISM_TENSOR));break; 1098412e9a14SMatthew G. Knepley } 1099cd0c2139SMatthew G Knepley } else if (dep == 0) { 11004c367dbcSMatthew G. Knepley const PetscInt hybedge = p + pMaxNew[dep+1] + numSplitPoints[dep+1]; 1101cd0c2139SMatthew G Knepley 1102*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexGetSupport(dm, oldp, &support)); 11034c367dbcSMatthew G. Knepley for (e = 0, qn = 0, qp = 0, qf = 0; e < supportSize; ++e) { 1104cd0c2139SMatthew G Knepley PetscInt val; 1105cd0c2139SMatthew G Knepley 1106*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMLabelGetValue(label, support[e], &val)); 11074c367dbcSMatthew G. Knepley if (val == 1) ++qf; 11084c367dbcSMatthew G. Knepley if ((val == 1) || (val == (shift + 1))) ++qn; 11094c367dbcSMatthew G. Knepley if ((val == 1) || (val == -(shift + 1))) ++qp; 1110cd0c2139SMatthew G Knepley } 11114c367dbcSMatthew G. Knepley /* Split old vertex: Edges into original vertex and new cohesive edge */ 1112*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexSetSupportSize(sdm, newp, qn+1)); 11134c367dbcSMatthew G. Knepley /* Split new vertex: Edges into split vertex and new cohesive edge */ 1114*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexSetSupportSize(sdm, splitp, qp+1)); 11154c367dbcSMatthew G. Knepley /* Add hybrid edge */ 1116*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexSetConeSize(sdm, hybedge, 2)); 1117*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexSetSupportSize(sdm, hybedge, qf)); 1118*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexSetCellType(sdm, hybedge, DM_POLYTOPE_POINT_PRISM_TENSOR)); 1119cd0c2139SMatthew G Knepley } else if (dep == dim-2) { 11204c367dbcSMatthew G. Knepley const PetscInt hybface = p + pMaxNew[dep+1] + numSplitPoints[dep+1]; 11214c367dbcSMatthew G. Knepley 1122*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexGetSupport(dm, oldp, &support)); 11234c367dbcSMatthew G. Knepley for (e = 0, qn = 0, qp = 0, qf = 0; e < supportSize; ++e) { 1124cd0c2139SMatthew G Knepley PetscInt val; 1125cd0c2139SMatthew G Knepley 1126*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMLabelGetValue(label, support[e], &val)); 11274c367dbcSMatthew G. Knepley if (val == dim-1) ++qf; 11284c367dbcSMatthew G. Knepley if ((val == dim-1) || (val == (shift + dim-1))) ++qn; 11294c367dbcSMatthew G. Knepley if ((val == dim-1) || (val == -(shift + dim-1))) ++qp; 1130cd0c2139SMatthew G Knepley } 11314c367dbcSMatthew G. Knepley /* Split old edge: Faces into original edge and cohesive face (positive side?) */ 1132*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexSetSupportSize(sdm, newp, qn+1)); 11334c367dbcSMatthew G. Knepley /* Split new edge: Faces into split edge and cohesive face (negative side?) */ 1134*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexSetSupportSize(sdm, splitp, qp+1)); 11354c367dbcSMatthew G. Knepley /* Add hybrid face */ 1136*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexSetConeSize(sdm, hybface, 4)); 1137*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexSetSupportSize(sdm, hybface, qf)); 1138*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexSetCellType(sdm, hybface, DM_POLYTOPE_SEG_PRISM_TENSOR)); 1139cd0c2139SMatthew G Knepley } 1140cd0c2139SMatthew G Knepley } 1141cd0c2139SMatthew G Knepley } 114218c5995bSMatthew G. Knepley for (dep = 0; dep <= depth; ++dep) { 114318c5995bSMatthew G. Knepley for (p = 0; p < numUnsplitPoints[dep]; ++p) { 114418c5995bSMatthew G. Knepley const PetscInt oldp = unsplitPoints[dep][p]; 11452582d50cSToby Isaac const PetscInt newp = DMPlexShiftPoint_Internal(oldp, depth, depthShift) /*oldp + depthOffset[dep]*/; 114618c5995bSMatthew G. Knepley const PetscInt *support; 1147da1dd7e4SMatthew G. Knepley PetscInt coneSize, supportSize, qf, e, s; 114818c5995bSMatthew G. Knepley 1149*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexGetConeSize(dm, oldp, &coneSize)); 1150*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexGetSupportSize(dm, oldp, &supportSize)); 1151*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexGetSupport(dm, oldp, &support)); 115218c5995bSMatthew G. Knepley if (dep == 0) { 115318c5995bSMatthew G. Knepley const PetscInt hybedge = p + pMaxNew[dep+1] + numSplitPoints[dep+1] + numSplitPoints[dep]; 115418c5995bSMatthew G. Knepley 115539254ff6SMatthew G. Knepley /* Unsplit vertex: Edges into original vertex, split edges, and new cohesive edge twice */ 115639254ff6SMatthew G. Knepley for (s = 0, qf = 0; s < supportSize; ++s, ++qf) { 1157*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscFindInt(support[s], numSplitPoints[dep+1], splitPoints[dep+1], &e)); 115839254ff6SMatthew G. Knepley if (e >= 0) ++qf; 115939254ff6SMatthew G. Knepley } 1160*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexSetSupportSize(sdm, newp, qf+2)); 116118c5995bSMatthew G. Knepley /* Add hybrid edge */ 1162*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexSetConeSize(sdm, hybedge, 2)); 1163e1757548SMatthew G. Knepley for (e = 0, qf = 0; e < supportSize; ++e) { 1164e1757548SMatthew G. Knepley PetscInt val; 1165e1757548SMatthew G. Knepley 1166*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMLabelGetValue(label, support[e], &val)); 1167e1757548SMatthew G. Knepley /* Split and unsplit edges produce hybrid faces */ 1168da1dd7e4SMatthew G. Knepley if (val == 1) ++qf; 1169da1dd7e4SMatthew G. Knepley if (val == (shift2 + 1)) ++qf; 1170e1757548SMatthew G. Knepley } 1171*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexSetSupportSize(sdm, hybedge, qf)); 1172*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexSetCellType(sdm, hybedge, DM_POLYTOPE_POINT_PRISM_TENSOR)); 117318c5995bSMatthew G. Knepley } else if (dep == dim-2) { 117418c5995bSMatthew G. Knepley const PetscInt hybface = p + pMaxNew[dep+1] + numSplitPoints[dep+1] + numSplitPoints[dep]; 1175cd0c2139SMatthew G Knepley PetscInt val; 1176cd0c2139SMatthew G Knepley 1177da1dd7e4SMatthew G. Knepley for (e = 0, qf = 0; e < supportSize; ++e) { 1178*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMLabelGetValue(label, support[e], &val)); 1179da1dd7e4SMatthew G. Knepley if (val == dim-1) qf += 2; 1180da1dd7e4SMatthew G. Knepley else ++qf; 1181cd0c2139SMatthew G Knepley } 118218c5995bSMatthew G. Knepley /* Unsplit edge: Faces into original edge, split face, and cohesive face twice */ 1183*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexSetSupportSize(sdm, newp, qf+2)); 118418c5995bSMatthew G. Knepley /* Add hybrid face */ 1185da1dd7e4SMatthew G. Knepley for (e = 0, qf = 0; e < supportSize; ++e) { 1186*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMLabelGetValue(label, support[e], &val)); 1187da1dd7e4SMatthew G. Knepley if (val == dim-1) ++qf; 1188da1dd7e4SMatthew G. Knepley } 1189*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexSetConeSize(sdm, hybface, 4)); 1190*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexSetSupportSize(sdm, hybface, qf)); 1191*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexSetCellType(sdm, hybface, DM_POLYTOPE_SEG_PRISM_TENSOR)); 1192cd0c2139SMatthew G Knepley } 1193cd0c2139SMatthew G Knepley } 1194cd0c2139SMatthew G Knepley } 1195cd0c2139SMatthew G Knepley /* Step 4: Setup split DM */ 1196*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMSetUp(sdm)); 1197*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexShiftPoints_Internal(dm, depthShift, sdm)); 1198*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexGetMaxSizes(sdm, &maxConeSizeNew, &maxSupportSizeNew)); 1199*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscMalloc3(PetscMax(maxConeSize, maxConeSizeNew)*3,&coneNew,PetscMax(maxConeSize, maxConeSizeNew)*3,&coneONew,PetscMax(maxSupportSize, maxSupportSizeNew),&supportNew)); 1200cd0c2139SMatthew G Knepley /* Step 6: Set cones and supports for new points */ 1201cd0c2139SMatthew G Knepley for (dep = 0; dep <= depth; ++dep) { 1202cd0c2139SMatthew G Knepley for (p = 0; p < numSplitPoints[dep]; ++p) { 1203cd0c2139SMatthew G Knepley const PetscInt oldp = splitPoints[dep][p]; 12042582d50cSToby Isaac const PetscInt newp = DMPlexShiftPoint_Internal(oldp, depth, depthShift) /*oldp + depthOffset[dep]*/; 12054c367dbcSMatthew G. Knepley const PetscInt splitp = p + pMaxNew[dep]; 1206cd0c2139SMatthew G Knepley const PetscInt *cone, *support, *ornt; 1207b5a892a1SMatthew G. Knepley DMPolytopeType ct; 12084c367dbcSMatthew G. Knepley PetscInt coneSize, supportSize, q, qf, qn, qp, v, e, s; 1209cd0c2139SMatthew G Knepley 1210*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexGetCellType(dm, oldp, &ct)); 1211*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexGetConeSize(dm, oldp, &coneSize)); 1212*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexGetCone(dm, oldp, &cone)); 1213*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexGetConeOrientation(dm, oldp, &ornt)); 1214*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexGetSupportSize(dm, oldp, &supportSize)); 1215*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexGetSupport(dm, oldp, &support)); 1216cd0c2139SMatthew G Knepley if (dep == depth-1) { 121796a07cd0SMatthew G. Knepley PetscBool hasUnsplit = PETSC_FALSE; 12184c367dbcSMatthew G. Knepley const PetscInt hybcell = p + pMaxNew[dep+1] + numSplitPoints[dep+1]; 1219cd0c2139SMatthew G Knepley const PetscInt *supportF; 1220cd0c2139SMatthew G Knepley 1221cd0c2139SMatthew G Knepley /* Split face: copy in old face to new face to start */ 1222*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexGetSupport(sdm, newp, &supportF)); 1223*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexSetSupport(sdm, splitp, supportF)); 1224cd0c2139SMatthew G Knepley /* Split old face: old vertices/edges in cone so no change */ 1225cd0c2139SMatthew G Knepley /* Split new face: new vertices/edges in cone */ 1226cd0c2139SMatthew G Knepley for (q = 0; q < coneSize; ++q) { 1227*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscFindInt(cone[q], numSplitPoints[dep-1], splitPoints[dep-1], &v)); 122818c5995bSMatthew G. Knepley if (v < 0) { 1229*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscFindInt(cone[q], numUnsplitPoints[dep-1], unsplitPoints[dep-1], &v)); 12302c71b3e2SJacob Faibussowitsch PetscCheckFalse(v < 0,PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Could not locate point %d in split or unsplit points of depth %d", cone[q], dep-1); 12312582d50cSToby Isaac coneNew[2+q] = DMPlexShiftPoint_Internal(cone[q], depth, depthShift) /*cone[q] + depthOffset[dep-1]*/; 123296a07cd0SMatthew G. Knepley hasUnsplit = PETSC_TRUE; 123318c5995bSMatthew G. Knepley } else { 12344c367dbcSMatthew G. Knepley coneNew[2+q] = v + pMaxNew[dep-1]; 1235163235baSMatthew G. Knepley if (dep > 1) { 1236163235baSMatthew G. Knepley const PetscInt *econe; 1237163235baSMatthew G. Knepley PetscInt econeSize, r, vs, vu; 1238163235baSMatthew G. Knepley 1239*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexGetConeSize(dm, cone[q], &econeSize)); 1240*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexGetCone(dm, cone[q], &econe)); 1241163235baSMatthew G. Knepley for (r = 0; r < econeSize; ++r) { 1242*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscFindInt(econe[r], numSplitPoints[dep-2], splitPoints[dep-2], &vs)); 1243*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscFindInt(econe[r], numUnsplitPoints[dep-2], unsplitPoints[dep-2], &vu)); 1244163235baSMatthew G. Knepley if (vs >= 0) continue; 12452c71b3e2SJacob Faibussowitsch PetscCheckFalse(vu < 0,PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Could not locate point %d in split or unsplit points of depth %d", econe[r], dep-2); 1246163235baSMatthew G. Knepley hasUnsplit = PETSC_TRUE; 1247163235baSMatthew G. Knepley } 1248163235baSMatthew G. Knepley } 1249cd0c2139SMatthew G Knepley } 1250cd0c2139SMatthew G Knepley } 1251*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexSetCone(sdm, splitp, &coneNew[2])); 1252*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexSetConeOrientation(sdm, splitp, ornt)); 1253e537020bSMatthew G. Knepley /* Face support */ 1254cd0c2139SMatthew G Knepley for (s = 0; s < supportSize; ++s) { 1255cd0c2139SMatthew G Knepley PetscInt val; 1256cd0c2139SMatthew G Knepley 1257*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMLabelGetValue(label, support[s], &val)); 1258cd0c2139SMatthew G Knepley if (val < 0) { 1259cd0c2139SMatthew G Knepley /* Split old face: Replace negative side cell with cohesive cell */ 1260*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexInsertSupport(sdm, newp, s, hybcell)); 1261cd0c2139SMatthew G Knepley } else { 1262cd0c2139SMatthew G Knepley /* Split new face: Replace positive side cell with cohesive cell */ 1263*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexInsertSupport(sdm, splitp, s, hybcell)); 1264e537020bSMatthew G. Knepley /* Get orientation for cohesive face */ 1265e537020bSMatthew G. Knepley { 1266e537020bSMatthew G. Knepley const PetscInt *ncone, *nconeO; 1267e537020bSMatthew G. Knepley PetscInt nconeSize, nc; 1268e537020bSMatthew G. Knepley 1269*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexGetConeSize(dm, support[s], &nconeSize)); 1270*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexGetCone(dm, support[s], &ncone)); 1271*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexGetConeOrientation(dm, support[s], &nconeO)); 1272e537020bSMatthew G. Knepley for (nc = 0; nc < nconeSize; ++nc) { 1273e537020bSMatthew G. Knepley if (ncone[nc] == oldp) { 1274e537020bSMatthew G. Knepley coneONew[0] = nconeO[nc]; 1275e537020bSMatthew G. Knepley break; 1276cd0c2139SMatthew G Knepley } 1277cd0c2139SMatthew G Knepley } 12782c71b3e2SJacob Faibussowitsch PetscCheckFalse(nc >= nconeSize,PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Could not locate face %d in neighboring cell %d", oldp, support[s]); 1279e537020bSMatthew G. Knepley } 1280e537020bSMatthew G. Knepley } 1281e537020bSMatthew G. Knepley } 12824c367dbcSMatthew G. Knepley /* Cohesive cell: Old and new split face, then new cohesive faces */ 1283b5a892a1SMatthew G. Knepley const PetscInt *arr = DMPolytopeTypeGetArrangment(ct, coneONew[0]); 1284b5a892a1SMatthew G. Knepley 1285fd4b9f15SMatthew G. Knepley coneNew[0] = newp; /* Extracted negative side orientation above */ 12864c367dbcSMatthew G. Knepley coneNew[1] = splitp; 12874c367dbcSMatthew G. Knepley coneONew[1] = coneONew[0]; 1288e537020bSMatthew G. Knepley for (q = 0; q < coneSize; ++q) { 1289412e9a14SMatthew G. Knepley /* Hybrid faces must follow order from oriented end face */ 1290b5a892a1SMatthew G. Knepley const PetscInt qa = arr[q*2+0]; 1291b5a892a1SMatthew G. Knepley const PetscInt qo = arr[q*2+1]; 1292b5a892a1SMatthew G. Knepley DMPolytopeType ft = dep == 2 ? DM_POLYTOPE_SEGMENT : DM_POLYTOPE_POINT; 1293412e9a14SMatthew G. Knepley 1294*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscFindInt(cone[qa], numSplitPoints[dep-1], splitPoints[dep-1], &v)); 129518c5995bSMatthew G. Knepley if (v < 0) { 1296*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscFindInt(cone[qa], numUnsplitPoints[dep-1], unsplitPoints[dep-1], &v)); 129718c5995bSMatthew G. Knepley coneNew[2+q] = v + pMaxNew[dep] + numSplitPoints[dep] + numSplitPoints[dep-1]; 129818c5995bSMatthew G. Knepley } else { 129918c5995bSMatthew G. Knepley coneNew[2+q] = v + pMaxNew[dep] + numSplitPoints[dep]; 130018c5995bSMatthew G. Knepley } 1301b5a892a1SMatthew G. Knepley coneONew[2+q] = DMPolytopeTypeComposeOrientation(ft, qo, ornt[qa]); 1302e537020bSMatthew G. Knepley } 1303*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexSetCone(sdm, hybcell, coneNew)); 1304*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexSetConeOrientation(sdm, hybcell, coneONew)); 130596a07cd0SMatthew G. Knepley /* Label the hybrid cells on the boundary of the split */ 1306*5f80ce2aSJacob Faibussowitsch if (hasUnsplit) CHKERRQ(DMLabelSetValue(label, -hybcell, dim)); 1307cd0c2139SMatthew G Knepley } else if (dep == 0) { 13084c367dbcSMatthew G. Knepley const PetscInt hybedge = p + pMaxNew[dep+1] + numSplitPoints[dep+1]; 1309cd0c2139SMatthew G Knepley 1310cd0c2139SMatthew G Knepley /* Split old vertex: Edges in old split faces and new cohesive edge */ 13114c367dbcSMatthew G. Knepley for (e = 0, qn = 0; e < supportSize; ++e) { 1312cd0c2139SMatthew G Knepley PetscInt val; 1313cd0c2139SMatthew G Knepley 1314*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMLabelGetValue(label, support[e], &val)); 1315cd0c2139SMatthew G Knepley if ((val == 1) || (val == (shift + 1))) { 13162582d50cSToby Isaac supportNew[qn++] = DMPlexShiftPoint_Internal(support[e], depth, depthShift) /*support[e] + depthOffset[dep+1]*/; 1317cd0c2139SMatthew G Knepley } 1318cd0c2139SMatthew G Knepley } 13194c367dbcSMatthew G. Knepley supportNew[qn] = hybedge; 1320*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexSetSupport(sdm, newp, supportNew)); 1321cd0c2139SMatthew G Knepley /* Split new vertex: Edges in new split faces and new cohesive edge */ 13224c367dbcSMatthew G. Knepley for (e = 0, qp = 0; e < supportSize; ++e) { 1323cd0c2139SMatthew G Knepley PetscInt val, edge; 1324cd0c2139SMatthew G Knepley 1325*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMLabelGetValue(label, support[e], &val)); 1326cd0c2139SMatthew G Knepley if (val == 1) { 1327*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscFindInt(support[e], numSplitPoints[dep+1], splitPoints[dep+1], &edge)); 13282c71b3e2SJacob Faibussowitsch PetscCheckFalse(edge < 0,comm, PETSC_ERR_ARG_WRONG, "Edge %d is not a split edge", support[e]); 13294c367dbcSMatthew G. Knepley supportNew[qp++] = edge + pMaxNew[dep+1]; 1330cd0c2139SMatthew G Knepley } else if (val == -(shift + 1)) { 13312582d50cSToby Isaac supportNew[qp++] = DMPlexShiftPoint_Internal(support[e], depth, depthShift) /*support[e] + depthOffset[dep+1]*/; 1332cd0c2139SMatthew G Knepley } 1333cd0c2139SMatthew G Knepley } 13344c367dbcSMatthew G. Knepley supportNew[qp] = hybedge; 1335*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexSetSupport(sdm, splitp, supportNew)); 13364c367dbcSMatthew G. Knepley /* Hybrid edge: Old and new split vertex */ 1337cd0c2139SMatthew G Knepley coneNew[0] = newp; 1338cd0c2139SMatthew G Knepley coneNew[1] = splitp; 1339*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexSetCone(sdm, hybedge, coneNew)); 13404c367dbcSMatthew G. Knepley for (e = 0, qf = 0; e < supportSize; ++e) { 13414c367dbcSMatthew G. Knepley PetscInt val, edge; 13424c367dbcSMatthew G. Knepley 1343*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMLabelGetValue(label, support[e], &val)); 13444c367dbcSMatthew G. Knepley if (val == 1) { 1345*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscFindInt(support[e], numSplitPoints[dep+1], splitPoints[dep+1], &edge)); 13462c71b3e2SJacob Faibussowitsch PetscCheckFalse(edge < 0,comm, PETSC_ERR_ARG_WRONG, "Edge %d is not a split edge", support[e]); 13474c367dbcSMatthew G. Knepley supportNew[qf++] = edge + pMaxNew[dep+2] + numSplitPoints[dep+2]; 13484c367dbcSMatthew G. Knepley } 13494c367dbcSMatthew G. Knepley } 1350*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexSetSupport(sdm, hybedge, supportNew)); 1351cd0c2139SMatthew G Knepley } else if (dep == dim-2) { 13524c367dbcSMatthew G. Knepley const PetscInt hybface = p + pMaxNew[dep+1] + numSplitPoints[dep+1]; 13534c367dbcSMatthew G. Knepley 1354cd0c2139SMatthew G Knepley /* Split old edge: old vertices in cone so no change */ 1355cd0c2139SMatthew G Knepley /* Split new edge: new vertices in cone */ 1356cd0c2139SMatthew G Knepley for (q = 0; q < coneSize; ++q) { 1357*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscFindInt(cone[q], numSplitPoints[dep-1], splitPoints[dep-1], &v)); 1358e1757548SMatthew G. Knepley if (v < 0) { 1359*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscFindInt(cone[q], numUnsplitPoints[dep-1], unsplitPoints[dep-1], &v)); 13602c71b3e2SJacob Faibussowitsch PetscCheckFalse(v < 0,PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Could not locate point %d in split or unsplit points of depth %d", cone[q], dep-1); 13612582d50cSToby Isaac coneNew[q] = DMPlexShiftPoint_Internal(cone[q], depth, depthShift) /*cone[q] + depthOffset[dep-1]*/; 1362e1757548SMatthew G. Knepley } else { 13634c367dbcSMatthew G. Knepley coneNew[q] = v + pMaxNew[dep-1]; 1364cd0c2139SMatthew G Knepley } 1365e1757548SMatthew G. Knepley } 1366*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexSetCone(sdm, splitp, coneNew)); 1367cd0c2139SMatthew G Knepley /* Split old edge: Faces in positive side cells and old split faces */ 1368cd0c2139SMatthew G Knepley for (e = 0, q = 0; e < supportSize; ++e) { 1369cd0c2139SMatthew G Knepley PetscInt val; 1370cd0c2139SMatthew G Knepley 1371*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMLabelGetValue(label, support[e], &val)); 13724c367dbcSMatthew G. Knepley if (val == dim-1) { 13732582d50cSToby Isaac supportNew[q++] = DMPlexShiftPoint_Internal(support[e], depth, depthShift) /*support[e] + depthOffset[dep+1]*/; 13744c367dbcSMatthew G. Knepley } else if (val == (shift + dim-1)) { 13752582d50cSToby Isaac supportNew[q++] = DMPlexShiftPoint_Internal(support[e], depth, depthShift) /*support[e] + depthOffset[dep+1]*/; 1376cd0c2139SMatthew G Knepley } 1377cd0c2139SMatthew G Knepley } 1378b279cd2aSMatthew G. Knepley supportNew[q++] = p + pMaxNew[dep+1] + numSplitPoints[dep+1]; 1379*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexSetSupport(sdm, newp, supportNew)); 1380cd0c2139SMatthew G Knepley /* Split new edge: Faces in negative side cells and new split faces */ 1381cd0c2139SMatthew G Knepley for (e = 0, q = 0; e < supportSize; ++e) { 1382cd0c2139SMatthew G Knepley PetscInt val, face; 1383cd0c2139SMatthew G Knepley 1384*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMLabelGetValue(label, support[e], &val)); 1385cd0c2139SMatthew G Knepley if (val == dim-1) { 1386*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscFindInt(support[e], numSplitPoints[dep+1], splitPoints[dep+1], &face)); 13872c71b3e2SJacob Faibussowitsch PetscCheckFalse(face < 0,comm, PETSC_ERR_ARG_WRONG, "Face %d is not a split face", support[e]); 13884c367dbcSMatthew G. Knepley supportNew[q++] = face + pMaxNew[dep+1]; 1389cd0c2139SMatthew G Knepley } else if (val == -(shift + dim-1)) { 13902582d50cSToby Isaac supportNew[q++] = DMPlexShiftPoint_Internal(support[e], depth, depthShift) /*support[e] + depthOffset[dep+1]*/; 1391cd0c2139SMatthew G Knepley } 1392cd0c2139SMatthew G Knepley } 1393b279cd2aSMatthew G. Knepley supportNew[q++] = p + pMaxNew[dep+1] + numSplitPoints[dep+1]; 1394*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexSetSupport(sdm, splitp, supportNew)); 13954c367dbcSMatthew G. Knepley /* Hybrid face */ 13964c367dbcSMatthew G. Knepley coneNew[0] = newp; 13974c367dbcSMatthew G. Knepley coneNew[1] = splitp; 13984c367dbcSMatthew G. Knepley for (v = 0; v < coneSize; ++v) { 13994c367dbcSMatthew G. Knepley PetscInt vertex; 1400*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscFindInt(cone[v], numSplitPoints[dep-1], splitPoints[dep-1], &vertex)); 1401e1757548SMatthew G. Knepley if (vertex < 0) { 1402*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscFindInt(cone[v], numUnsplitPoints[dep-1], unsplitPoints[dep-1], &vertex)); 14032c71b3e2SJacob Faibussowitsch PetscCheckFalse(vertex < 0,PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Could not locate point %d in split or unsplit points of depth %d", cone[v], dep-1); 1404e1757548SMatthew G. Knepley coneNew[2+v] = vertex + pMaxNew[dep] + numSplitPoints[dep] + numSplitPoints[dep-1]; 1405e1757548SMatthew G. Knepley } else { 14064c367dbcSMatthew G. Knepley coneNew[2+v] = vertex + pMaxNew[dep] + numSplitPoints[dep]; 14074c367dbcSMatthew G. Knepley } 1408e1757548SMatthew G. Knepley } 1409*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexSetCone(sdm, hybface, coneNew)); 14104c367dbcSMatthew G. Knepley for (e = 0, qf = 0; e < supportSize; ++e) { 14114c367dbcSMatthew G. Knepley PetscInt val, face; 14124c367dbcSMatthew G. Knepley 1413*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMLabelGetValue(label, support[e], &val)); 14144c367dbcSMatthew G. Knepley if (val == dim-1) { 1415*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscFindInt(support[e], numSplitPoints[dep+1], splitPoints[dep+1], &face)); 14162c71b3e2SJacob Faibussowitsch PetscCheckFalse(face < 0,comm, PETSC_ERR_ARG_WRONG, "Face %d is not a split face", support[e]); 14174c367dbcSMatthew G. Knepley supportNew[qf++] = face + pMaxNew[dep+2] + numSplitPoints[dep+2]; 14184c367dbcSMatthew G. Knepley } 14194c367dbcSMatthew G. Knepley } 1420*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexSetSupport(sdm, hybface, supportNew)); 1421cd0c2139SMatthew G Knepley } 1422cd0c2139SMatthew G Knepley } 1423cd0c2139SMatthew G Knepley } 142418c5995bSMatthew G. Knepley for (dep = 0; dep <= depth; ++dep) { 142518c5995bSMatthew G. Knepley for (p = 0; p < numUnsplitPoints[dep]; ++p) { 142618c5995bSMatthew G. Knepley const PetscInt oldp = unsplitPoints[dep][p]; 14272582d50cSToby Isaac const PetscInt newp = DMPlexShiftPoint_Internal(oldp, depth, depthShift) /*oldp + depthOffset[dep]*/; 1428b5a892a1SMatthew G. Knepley const PetscInt *cone, *support; 1429e1757548SMatthew G. Knepley PetscInt coneSize, supportSize, supportSizeNew, q, qf, e, f, s; 143018c5995bSMatthew G. Knepley 1431*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexGetConeSize(dm, oldp, &coneSize)); 1432*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexGetCone(dm, oldp, &cone)); 1433*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexGetSupportSize(dm, oldp, &supportSize)); 1434*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexGetSupport(dm, oldp, &support)); 143518c5995bSMatthew G. Knepley if (dep == 0) { 143618c5995bSMatthew G. Knepley const PetscInt hybedge = p + pMaxNew[dep+1] + numSplitPoints[dep+1] + numSplitPoints[dep]; 143718c5995bSMatthew G. Knepley 143818c5995bSMatthew G. Knepley /* Unsplit vertex */ 1439*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexGetSupportSize(sdm, newp, &supportSizeNew)); 144018c5995bSMatthew G. Knepley for (s = 0, q = 0; s < supportSize; ++s) { 14412582d50cSToby Isaac supportNew[q++] = DMPlexShiftPoint_Internal(support[s], depth, depthShift) /*support[s] + depthOffset[dep+1]*/; 1442*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscFindInt(support[s], numSplitPoints[dep+1], splitPoints[dep+1], &e)); 144318c5995bSMatthew G. Knepley if (e >= 0) { 144418c5995bSMatthew G. Knepley supportNew[q++] = e + pMaxNew[dep+1]; 144518c5995bSMatthew G. Knepley } 144618c5995bSMatthew G. Knepley } 144718c5995bSMatthew G. Knepley supportNew[q++] = hybedge; 144818c5995bSMatthew G. Knepley supportNew[q++] = hybedge; 14492c71b3e2SJacob Faibussowitsch PetscCheckFalse(q != supportSizeNew,comm, PETSC_ERR_ARG_WRONG, "Support size %d != %d for vertex %d", q, supportSizeNew, newp); 1450*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexSetSupport(sdm, newp, supportNew)); 145118c5995bSMatthew G. Knepley /* Hybrid edge */ 145218c5995bSMatthew G. Knepley coneNew[0] = newp; 145318c5995bSMatthew G. Knepley coneNew[1] = newp; 1454*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexSetCone(sdm, hybedge, coneNew)); 145518c5995bSMatthew G. Knepley for (e = 0, qf = 0; e < supportSize; ++e) { 145618c5995bSMatthew G. Knepley PetscInt val, edge; 145718c5995bSMatthew G. Knepley 1458*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMLabelGetValue(label, support[e], &val)); 145918c5995bSMatthew G. Knepley if (val == 1) { 1460*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscFindInt(support[e], numSplitPoints[dep+1], splitPoints[dep+1], &edge)); 14612c71b3e2SJacob Faibussowitsch PetscCheckFalse(edge < 0,comm, PETSC_ERR_ARG_WRONG, "Edge %d is not a split edge", support[e]); 146218c5995bSMatthew G. Knepley supportNew[qf++] = edge + pMaxNew[dep+2] + numSplitPoints[dep+2]; 1463e1757548SMatthew G. Knepley } else if (val == (shift2 + 1)) { 1464*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscFindInt(support[e], numUnsplitPoints[dep+1], unsplitPoints[dep+1], &edge)); 14652c71b3e2SJacob Faibussowitsch PetscCheckFalse(edge < 0,comm, PETSC_ERR_ARG_WRONG, "Edge %d is not a unsplit edge", support[e]); 1466e1757548SMatthew G. Knepley supportNew[qf++] = edge + pMaxNew[dep+2] + numSplitPoints[dep+2] + numSplitPoints[dep+1]; 146718c5995bSMatthew G. Knepley } 146818c5995bSMatthew G. Knepley } 1469*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexSetSupport(sdm, hybedge, supportNew)); 1470e1757548SMatthew G. Knepley } else if (dep == dim-2) { 1471e1757548SMatthew G. Knepley const PetscInt hybface = p + pMaxNew[dep+1] + numSplitPoints[dep+1] + numSplitPoints[dep]; 1472e1757548SMatthew G. Knepley 1473da1dd7e4SMatthew G. Knepley /* Unsplit edge: Faces into original edge, split face, and hybrid face twice */ 1474e1757548SMatthew G. Knepley for (f = 0, qf = 0; f < supportSize; ++f) { 1475e1757548SMatthew G. Knepley PetscInt val, face; 1476e1757548SMatthew G. Knepley 1477*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMLabelGetValue(label, support[f], &val)); 1478e1757548SMatthew G. Knepley if (val == dim-1) { 1479*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscFindInt(support[f], numSplitPoints[dep+1], splitPoints[dep+1], &face)); 14802c71b3e2SJacob Faibussowitsch PetscCheckFalse(face < 0,comm, PETSC_ERR_ARG_WRONG, "Face %d is not a split face", support[f]); 14812582d50cSToby Isaac supportNew[qf++] = DMPlexShiftPoint_Internal(support[f], depth, depthShift) /*support[f] + depthOffset[dep+1]*/; 1482e1757548SMatthew G. Knepley supportNew[qf++] = face + pMaxNew[dep+1]; 1483e1757548SMatthew G. Knepley } else { 14842582d50cSToby Isaac supportNew[qf++] = DMPlexShiftPoint_Internal(support[f], depth, depthShift) /*support[f] + depthOffset[dep+1]*/; 1485e1757548SMatthew G. Knepley } 1486e1757548SMatthew G. Knepley } 1487e1757548SMatthew G. Knepley supportNew[qf++] = hybface; 1488e1757548SMatthew G. Knepley supportNew[qf++] = hybface; 1489*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexGetSupportSize(sdm, newp, &supportSizeNew)); 14902c71b3e2SJacob Faibussowitsch PetscCheckFalse(qf != supportSizeNew,PETSC_COMM_SELF, PETSC_ERR_PLIB, "Support size for unsplit edge %d is %d != %d", newp, qf, supportSizeNew); 1491*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexSetSupport(sdm, newp, supportNew)); 1492e1757548SMatthew G. Knepley /* Add hybrid face */ 1493e1757548SMatthew G. Knepley coneNew[0] = newp; 1494212cc919SMatthew G. Knepley coneNew[1] = newp; 1495*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscFindInt(cone[0], numUnsplitPoints[dep-1], unsplitPoints[dep-1], &v)); 14962c71b3e2SJacob Faibussowitsch PetscCheckFalse(v < 0,comm, PETSC_ERR_ARG_WRONG, "Vertex %d is not an unsplit vertex", cone[0]); 1497212cc919SMatthew G. Knepley coneNew[2] = v + pMaxNew[dep] + numSplitPoints[dep] + numSplitPoints[dep-1]; 1498*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscFindInt(cone[1], numUnsplitPoints[dep-1], unsplitPoints[dep-1], &v)); 14992c71b3e2SJacob Faibussowitsch PetscCheckFalse(v < 0,comm, PETSC_ERR_ARG_WRONG, "Vertex %d is not an unsplit vertex", cone[1]); 1500e1757548SMatthew G. Knepley coneNew[3] = v + pMaxNew[dep] + numSplitPoints[dep] + numSplitPoints[dep-1]; 1501*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexSetCone(sdm, hybface, coneNew)); 1502da1dd7e4SMatthew G. Knepley for (f = 0, qf = 0; f < supportSize; ++f) { 1503da1dd7e4SMatthew G. Knepley PetscInt val, face; 1504da1dd7e4SMatthew G. Knepley 1505*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMLabelGetValue(label, support[f], &val)); 1506da1dd7e4SMatthew G. Knepley if (val == dim-1) { 1507*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscFindInt(support[f], numSplitPoints[dep+1], splitPoints[dep+1], &face)); 1508da1dd7e4SMatthew G. Knepley supportNew[qf++] = face + pMaxNew[dep+2] + numSplitPoints[dep+2]; 1509da1dd7e4SMatthew G. Knepley } 1510da1dd7e4SMatthew G. Knepley } 1511*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexGetSupportSize(sdm, hybface, &supportSizeNew)); 15122c71b3e2SJacob Faibussowitsch PetscCheckFalse(qf != supportSizeNew,PETSC_COMM_SELF, PETSC_ERR_PLIB, "Support size for hybrid face %d is %d != %d", hybface, qf, supportSizeNew); 1513*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexSetSupport(sdm, hybface, supportNew)); 1514cd0c2139SMatthew G Knepley } 1515cd0c2139SMatthew G Knepley } 1516cd0c2139SMatthew G Knepley } 1517cd0c2139SMatthew G Knepley /* Step 6b: Replace split points in negative side cones */ 1518cd0c2139SMatthew G Knepley for (sp = 0; sp < numSP; ++sp) { 1519cd0c2139SMatthew G Knepley PetscInt dep = values[sp]; 1520cd0c2139SMatthew G Knepley IS pIS; 1521cd0c2139SMatthew G Knepley PetscInt numPoints; 1522cd0c2139SMatthew G Knepley const PetscInt *points; 1523cd0c2139SMatthew G Knepley 1524cd0c2139SMatthew G Knepley if (dep >= 0) continue; 1525*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMLabelGetStratumIS(label, dep, &pIS)); 1526cd0c2139SMatthew G Knepley if (!pIS) continue; 1527cd0c2139SMatthew G Knepley dep = -dep - shift; 1528*5f80ce2aSJacob Faibussowitsch CHKERRQ(ISGetLocalSize(pIS, &numPoints)); 1529*5f80ce2aSJacob Faibussowitsch CHKERRQ(ISGetIndices(pIS, &points)); 1530cd0c2139SMatthew G Knepley for (p = 0; p < numPoints; ++p) { 1531cd0c2139SMatthew G Knepley const PetscInt oldp = points[p]; 15322582d50cSToby Isaac const PetscInt newp = DMPlexShiftPoint_Internal(oldp, depth, depthShift) /*depthOffset[dep] + oldp*/; 1533cd0c2139SMatthew G Knepley const PetscInt *cone; 1534cd0c2139SMatthew G Knepley PetscInt coneSize, c; 153550cf782dSMatthew G. Knepley /* PetscBool replaced = PETSC_FALSE; */ 1536cd0c2139SMatthew G Knepley 1537cd0c2139SMatthew G Knepley /* Negative edge: replace split vertex */ 1538cd0c2139SMatthew G Knepley /* Negative cell: replace split face */ 1539*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexGetConeSize(sdm, newp, &coneSize)); 1540*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexGetCone(sdm, newp, &cone)); 1541cd0c2139SMatthew G Knepley for (c = 0; c < coneSize; ++c) { 1542e38fbfedSToby Isaac const PetscInt coldp = DMPlexShiftPointInverse_Internal(cone[c],depth,depthShift); 1543cd0c2139SMatthew G Knepley PetscInt csplitp, cp, val; 1544cd0c2139SMatthew G Knepley 1545*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMLabelGetValue(label, coldp, &val)); 1546cd0c2139SMatthew G Knepley if (val == dep-1) { 1547*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscFindInt(coldp, numSplitPoints[dep-1], splitPoints[dep-1], &cp)); 15482c71b3e2SJacob Faibussowitsch PetscCheckFalse(cp < 0,comm, PETSC_ERR_ARG_WRONG, "Point %d is not a split point of dimension %d", oldp, dep-1); 1549cd0c2139SMatthew G Knepley csplitp = pMaxNew[dep-1] + cp; 1550*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexInsertCone(sdm, newp, c, csplitp)); 155150cf782dSMatthew G. Knepley /* replaced = PETSC_TRUE; */ 1552cd0c2139SMatthew G Knepley } 1553cd0c2139SMatthew G Knepley } 15544a189a86SMatthew G. Knepley /* Cells with only a vertex or edge on the submesh have no replacement */ 15552c71b3e2SJacob Faibussowitsch /* PetscCheckFalse(!replaced,comm, PETSC_ERR_ARG_WRONG, "The cone of point %d does not contain split points", oldp); */ 1556cd0c2139SMatthew G Knepley } 1557*5f80ce2aSJacob Faibussowitsch CHKERRQ(ISRestoreIndices(pIS, &points)); 1558*5f80ce2aSJacob Faibussowitsch CHKERRQ(ISDestroy(&pIS)); 1559cd0c2139SMatthew G Knepley } 1560fa8e8ae5SToby Isaac /* Step 7: Coordinates */ 1561*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexShiftCoordinates_Internal(dm, depthShift, sdm)); 1562*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMGetCoordinateSection(sdm, &coordSection)); 1563*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMGetCoordinatesLocal(sdm, &coordinates)); 1564*5f80ce2aSJacob Faibussowitsch CHKERRQ(VecGetArray(coordinates, &coords)); 1565cd0c2139SMatthew G Knepley for (v = 0; v < (numSplitPoints ? numSplitPoints[0] : 0); ++v) { 15662582d50cSToby Isaac const PetscInt newp = DMPlexShiftPoint_Internal(splitPoints[0][v], depth, depthShift) /*depthOffset[0] + splitPoints[0][v]*/; 1567cd0c2139SMatthew G Knepley const PetscInt splitp = pMaxNew[0] + v; 1568cd0c2139SMatthew G Knepley PetscInt dof, off, soff, d; 1569cd0c2139SMatthew G Knepley 1570*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscSectionGetDof(coordSection, newp, &dof)); 1571*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscSectionGetOffset(coordSection, newp, &off)); 1572*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscSectionGetOffset(coordSection, splitp, &soff)); 1573cd0c2139SMatthew G Knepley for (d = 0; d < dof; ++d) coords[soff+d] = coords[off+d]; 1574cd0c2139SMatthew G Knepley } 1575*5f80ce2aSJacob Faibussowitsch CHKERRQ(VecRestoreArray(coordinates, &coords)); 1576fa8e8ae5SToby Isaac /* Step 8: SF, if I can figure this out we can split the mesh in parallel */ 1577*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexShiftSF_Internal(dm, depthShift, sdm)); 1578fa8e8ae5SToby Isaac /* Step 9: Labels */ 1579*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexShiftLabels_Internal(dm, depthShift, sdm)); 1580*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexCreateVTKLabel_Internal(dm, PETSC_FALSE, sdm)); 1581*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMGetNumLabels(sdm, &numLabels)); 1582cd0c2139SMatthew G Knepley for (dep = 0; dep <= depth; ++dep) { 1583cd0c2139SMatthew G Knepley for (p = 0; p < numSplitPoints[dep]; ++p) { 15842582d50cSToby Isaac const PetscInt newp = DMPlexShiftPoint_Internal(splitPoints[dep][p], depth, depthShift) /*depthOffset[dep] + splitPoints[dep][p]*/; 1585cd0c2139SMatthew G Knepley const PetscInt splitp = pMaxNew[dep] + p; 1586cd0c2139SMatthew G Knepley PetscInt l; 1587cd0c2139SMatthew G Knepley 15887db7e0a7SMatthew G. Knepley if (splitLabel) { 15897db7e0a7SMatthew G. Knepley const PetscInt val = 100 + dep; 15907db7e0a7SMatthew G. Knepley 1591*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMLabelSetValue(splitLabel, newp, val)); 1592*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMLabelSetValue(splitLabel, splitp, -val)); 15937db7e0a7SMatthew G. Knepley } 1594cd0c2139SMatthew G Knepley for (l = 0; l < numLabels; ++l) { 1595cd0c2139SMatthew G Knepley DMLabel mlabel; 1596cd0c2139SMatthew G Knepley const char *lname; 1597cd0c2139SMatthew G Knepley PetscInt val; 15989a356370SMatthew G. Knepley PetscBool isDepth; 1599cd0c2139SMatthew G Knepley 1600*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMGetLabelName(sdm, l, &lname)); 1601*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscStrcmp(lname, "depth", &isDepth)); 16029a356370SMatthew G. Knepley if (isDepth) continue; 1603*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMGetLabel(sdm, lname, &mlabel)); 1604*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMLabelGetValue(mlabel, newp, &val)); 1605cd0c2139SMatthew G Knepley if (val >= 0) { 1606*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMLabelSetValue(mlabel, splitp, val)); 1607cd0c2139SMatthew G Knepley } 1608cd0c2139SMatthew G Knepley } 1609cd0c2139SMatthew G Knepley } 1610cd0c2139SMatthew G Knepley } 1611cd0c2139SMatthew G Knepley for (sp = 0; sp < numSP; ++sp) { 1612cd0c2139SMatthew G Knepley const PetscInt dep = values[sp]; 1613cd0c2139SMatthew G Knepley 1614cd0c2139SMatthew G Knepley if ((dep < 0) || (dep > depth)) continue; 1615*5f80ce2aSJacob Faibussowitsch if (splitIS[dep]) CHKERRQ(ISRestoreIndices(splitIS[dep], &splitPoints[dep])); 1616*5f80ce2aSJacob Faibussowitsch CHKERRQ(ISDestroy(&splitIS[dep])); 1617*5f80ce2aSJacob Faibussowitsch if (unsplitIS[dep]) CHKERRQ(ISRestoreIndices(unsplitIS[dep], &unsplitPoints[dep])); 1618*5f80ce2aSJacob Faibussowitsch CHKERRQ(ISDestroy(&unsplitIS[dep])); 1619cd0c2139SMatthew G Knepley } 1620cd0c2139SMatthew G Knepley if (label) { 1621*5f80ce2aSJacob Faibussowitsch CHKERRQ(ISRestoreIndices(valueIS, &values)); 1622*5f80ce2aSJacob Faibussowitsch CHKERRQ(ISDestroy(&valueIS)); 1623cd0c2139SMatthew G Knepley } 16240d4d4d06SMatthew G. Knepley for (d = 0; d <= depth; ++d) { 1625*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexGetDepthStratum(sdm, d, NULL, &pEnd)); 162636dbac82SMatthew G. Knepley pMaxNew[d] = pEnd - numHybridPoints[d] - numHybridPointsOld[d]; 16270d4d4d06SMatthew G. Knepley } 1628*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscFree3(coneNew, coneONew, supportNew)); 1629*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscFree5(depthMax, depthEnd, depthShift, pMaxNew, numHybridPointsOld)); 1630*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscFree7(splitIS, unsplitIS, numSplitPoints, numUnsplitPoints, numHybridPoints, splitPoints, unsplitPoints)); 1631cd0c2139SMatthew G Knepley PetscFunctionReturn(0); 1632cd0c2139SMatthew G Knepley } 1633cd0c2139SMatthew G Knepley 1634cd0c2139SMatthew G Knepley /*@C 1635cd0c2139SMatthew G Knepley DMPlexConstructCohesiveCells - Construct cohesive cells which split the face along an internal interface 1636cd0c2139SMatthew G Knepley 1637cd0c2139SMatthew G Knepley Collective on dm 1638cd0c2139SMatthew G Knepley 1639cd0c2139SMatthew G Knepley Input Parameters: 1640cd0c2139SMatthew G Knepley + dm - The original DM 164153156dfcSMatthew G. Knepley - label - The label specifying the boundary faces (this could be auto-generated) 1642cd0c2139SMatthew G Knepley 1643cd0c2139SMatthew G Knepley Output Parameters: 16447db7e0a7SMatthew G. Knepley + splitLabel - The label containing the split points, or NULL if no output is desired 1645cd0c2139SMatthew G Knepley - dmSplit - The new DM 1646cd0c2139SMatthew G Knepley 1647cd0c2139SMatthew G Knepley Level: developer 1648cd0c2139SMatthew G Knepley 16492be2b188SMatthew G Knepley .seealso: DMCreate(), DMPlexLabelCohesiveComplete() 1650cd0c2139SMatthew G Knepley @*/ 16517db7e0a7SMatthew G. Knepley PetscErrorCode DMPlexConstructCohesiveCells(DM dm, DMLabel label, DMLabel splitLabel, DM *dmSplit) 1652cd0c2139SMatthew G Knepley { 1653cd0c2139SMatthew G Knepley DM sdm; 1654cd0c2139SMatthew G Knepley PetscInt dim; 1655cd0c2139SMatthew G Knepley 1656cd0c2139SMatthew G Knepley PetscFunctionBegin; 1657cd0c2139SMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 1658064a246eSJacob Faibussowitsch PetscValidPointer(dmSplit, 4); 1659*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMCreate(PetscObjectComm((PetscObject)dm), &sdm)); 1660*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMSetType(sdm, DMPLEX)); 1661*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMGetDimension(dm, &dim)); 1662*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMSetDimension(sdm, dim)); 1663cd0c2139SMatthew G Knepley switch (dim) { 1664cd0c2139SMatthew G Knepley case 2: 1665cd0c2139SMatthew G Knepley case 3: 1666*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexConstructCohesiveCells_Internal(dm, label, splitLabel, sdm)); 1667cd0c2139SMatthew G Knepley break; 1668cd0c2139SMatthew G Knepley default: 166998921bdaSJacob Faibussowitsch SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Cannot construct cohesive cells for dimension %d", dim); 1670cd0c2139SMatthew G Knepley } 1671cd0c2139SMatthew G Knepley *dmSplit = sdm; 1672cd0c2139SMatthew G Knepley PetscFunctionReturn(0); 1673cd0c2139SMatthew G Knepley } 1674cd0c2139SMatthew G Knepley 16750f66a230SMatthew G. Knepley /* Returns the side of the surface for a given cell with a face on the surface */ 16760f66a230SMatthew G. Knepley static PetscErrorCode GetSurfaceSide_Static(DM dm, DM subdm, PetscInt numSubpoints, const PetscInt *subpoints, PetscInt cell, PetscInt face, PetscBool *pos) 16770f66a230SMatthew G. Knepley { 16780f66a230SMatthew G. Knepley const PetscInt *cone, *ornt; 16790f66a230SMatthew G. Knepley PetscInt dim, coneSize, c; 16800f66a230SMatthew G. Knepley 16810f66a230SMatthew G. Knepley PetscFunctionBegin; 16820f66a230SMatthew G. Knepley *pos = PETSC_TRUE; 1683*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMGetDimension(dm, &dim)); 1684*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexGetConeSize(dm, cell, &coneSize)); 1685*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexGetCone(dm, cell, &cone)); 1686*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexGetConeOrientation(dm, cell, &ornt)); 16870f66a230SMatthew G. Knepley for (c = 0; c < coneSize; ++c) { 16880f66a230SMatthew G. Knepley if (cone[c] == face) { 16890f66a230SMatthew G. Knepley PetscInt o = ornt[c]; 16900f66a230SMatthew G. Knepley 16910f66a230SMatthew G. Knepley if (subdm) { 16920f66a230SMatthew G. Knepley const PetscInt *subcone, *subornt; 16930f66a230SMatthew G. Knepley PetscInt subpoint, subface, subconeSize, sc; 16940f66a230SMatthew G. Knepley 1695*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscFindInt(cell, numSubpoints, subpoints, &subpoint)); 1696*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscFindInt(face, numSubpoints, subpoints, &subface)); 1697*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexGetConeSize(subdm, subpoint, &subconeSize)); 1698*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexGetCone(subdm, subpoint, &subcone)); 1699*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexGetConeOrientation(subdm, subpoint, &subornt)); 17000f66a230SMatthew G. Knepley for (sc = 0; sc < subconeSize; ++sc) { 17010f66a230SMatthew G. Knepley if (subcone[sc] == subface) { 17020f66a230SMatthew G. Knepley o = subornt[0]; 17030f66a230SMatthew G. Knepley break; 17040f66a230SMatthew G. Knepley } 17050f66a230SMatthew G. Knepley } 17062c71b3e2SJacob Faibussowitsch PetscCheckFalse(sc >= subconeSize,PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Could not find subpoint %d (%d) in cone for subpoint %d (%d)", subface, face, subpoint, cell); 17070f66a230SMatthew G. Knepley } 17080f66a230SMatthew G. Knepley if (o >= 0) *pos = PETSC_TRUE; 17090f66a230SMatthew G. Knepley else *pos = PETSC_FALSE; 17100f66a230SMatthew G. Knepley break; 17110f66a230SMatthew G. Knepley } 17120f66a230SMatthew G. Knepley } 17132c71b3e2SJacob Faibussowitsch PetscCheckFalse(c == coneSize,PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Cell %d in split face %d support does not have it in the cone", cell, face); 17140f66a230SMatthew G. Knepley PetscFunctionReturn(0); 17150f66a230SMatthew G. Knepley } 17160f66a230SMatthew G. Knepley 1717cd0c2139SMatthew G Knepley /*@ 17180f66a230SMatthew G. Knepley DMPlexLabelCohesiveComplete - Starting with a label marking points on an internal surface, we add all other mesh pieces 1719cd0c2139SMatthew G Knepley to complete the surface 1720cd0c2139SMatthew G Knepley 1721cd0c2139SMatthew G Knepley Input Parameters: 1722cd0c2139SMatthew G Knepley + dm - The DM 17230f66a230SMatthew G. Knepley . label - A DMLabel marking the surface 17240f66a230SMatthew G. Knepley . blabel - A DMLabel marking the vertices on the boundary which will not be duplicated, or NULL to find them automatically 1725bb55d314SMatthew G. Knepley . flip - Flag to flip the submesh normal and replace points on the other side 172647946fd8SMatthew G. Knepley - subdm - The subDM associated with the label, or NULL 1727cd0c2139SMatthew G Knepley 1728cd0c2139SMatthew G Knepley Output Parameter: 1729cd0c2139SMatthew G Knepley . label - A DMLabel marking all surface points 1730cd0c2139SMatthew G Knepley 17310f66a230SMatthew G. Knepley Note: The vertices in blabel are called "unsplit" in the terminology from hybrid cell creation. 17320f66a230SMatthew G. Knepley 1733cd0c2139SMatthew G Knepley Level: developer 1734cd0c2139SMatthew G Knepley 17352be2b188SMatthew G Knepley .seealso: DMPlexConstructCohesiveCells(), DMPlexLabelComplete() 1736cd0c2139SMatthew G Knepley @*/ 17370f66a230SMatthew G. Knepley PetscErrorCode DMPlexLabelCohesiveComplete(DM dm, DMLabel label, DMLabel blabel, PetscBool flip, DM subdm) 1738cd0c2139SMatthew G Knepley { 1739d90583fdSMatthew G. Knepley DMLabel depthLabel; 17408630cb1aSMatthew G. Knepley IS dimIS, subpointIS = NULL, facePosIS, faceNegIS, crossEdgeIS = NULL; 174147946fd8SMatthew G. Knepley const PetscInt *points, *subpoints; 1742bb55d314SMatthew G. Knepley const PetscInt rev = flip ? -1 : 1; 1743412e9a14SMatthew G. Knepley PetscInt shift = 100, shift2 = 200, dim, depth, dep, cStart, cEnd, vStart, vEnd, numPoints, numSubpoints, p, val; 1744cd0c2139SMatthew G Knepley 1745cd0c2139SMatthew G Knepley PetscFunctionBegin; 1746*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexGetDepth(dm, &depth)); 1747*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMGetDimension(dm, &dim)); 1748*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexGetDepthLabel(dm, &depthLabel)); 174947946fd8SMatthew G. Knepley if (subdm) { 1750*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexGetSubpointIS(subdm, &subpointIS)); 175147946fd8SMatthew G. Knepley if (subpointIS) { 1752*5f80ce2aSJacob Faibussowitsch CHKERRQ(ISGetLocalSize(subpointIS, &numSubpoints)); 1753*5f80ce2aSJacob Faibussowitsch CHKERRQ(ISGetIndices(subpointIS, &subpoints)); 175447946fd8SMatthew G. Knepley } 175547946fd8SMatthew G. Knepley } 1756d7c8f101SMatthew G. Knepley /* Mark cell on the fault, and its faces which touch the fault: cell orientation for face gives the side of the fault */ 1757*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMLabelGetStratumIS(label, dim-1, &dimIS)); 175897d8846cSMatthew Knepley if (!dimIS) PetscFunctionReturn(0); 1759*5f80ce2aSJacob Faibussowitsch CHKERRQ(ISGetLocalSize(dimIS, &numPoints)); 1760*5f80ce2aSJacob Faibussowitsch CHKERRQ(ISGetIndices(dimIS, &points)); 1761d7c8f101SMatthew G. Knepley for (p = 0; p < numPoints; ++p) { /* Loop over fault faces */ 1762cd0c2139SMatthew G Knepley const PetscInt *support; 1763cd0c2139SMatthew G Knepley PetscInt supportSize, s; 1764cd0c2139SMatthew G Knepley 1765*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexGetSupportSize(dm, points[p], &supportSize)); 1766c4419245SMatthew G. Knepley #if 0 1767c4419245SMatthew G. Knepley if (supportSize != 2) { 1768c4419245SMatthew G. Knepley const PetscInt *lp; 1769c4419245SMatthew G. Knepley PetscInt Nlp, pind; 1770c4419245SMatthew G. Knepley 1771c4419245SMatthew G. Knepley /* Check that for a cell with a single support face, that face is in the SF */ 1772c4419245SMatthew G. Knepley /* THis check only works for the remote side. We would need root side information */ 1773*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscSFGetGraph(dm->sf, NULL, &Nlp, &lp, NULL)); 1774*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscFindInt(points[p], Nlp, lp, &pind)); 17752c71b3e2SJacob Faibussowitsch PetscCheckFalse(pind < 0,PetscObjectComm((PetscObject) dm), PETSC_ERR_ARG_WRONG, "Split face %d has %d != 2 supports, and the face is not shared with another process", points[p], supportSize); 1776c4419245SMatthew G. Knepley } 1777c4419245SMatthew G. Knepley #endif 1778*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexGetSupport(dm, points[p], &support)); 1779cd0c2139SMatthew G Knepley for (s = 0; s < supportSize; ++s) { 17800f66a230SMatthew G. Knepley const PetscInt *cone; 1781cd0c2139SMatthew G Knepley PetscInt coneSize, c; 17820f66a230SMatthew G. Knepley PetscBool pos; 1783cd0c2139SMatthew G Knepley 1784*5f80ce2aSJacob Faibussowitsch CHKERRQ(GetSurfaceSide_Static(dm, subdm, numSubpoints, subpoints, support[s], points[p], &pos)); 1785*5f80ce2aSJacob Faibussowitsch if (pos) CHKERRQ(DMLabelSetValue(label, support[s], rev*(shift+dim))); 1786*5f80ce2aSJacob Faibussowitsch else CHKERRQ(DMLabelSetValue(label, support[s], -rev*(shift+dim))); 17870f66a230SMatthew G. Knepley if (rev < 0) pos = !pos ? PETSC_TRUE : PETSC_FALSE; 17880f66a230SMatthew G. Knepley /* Put faces touching the fault in the label */ 1789*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexGetConeSize(dm, support[s], &coneSize)); 1790*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexGetCone(dm, support[s], &cone)); 1791cd0c2139SMatthew G Knepley for (c = 0; c < coneSize; ++c) { 1792cd0c2139SMatthew G Knepley const PetscInt point = cone[c]; 1793cd0c2139SMatthew G Knepley 1794*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMLabelGetValue(label, point, &val)); 1795cd0c2139SMatthew G Knepley if (val == -1) { 1796cd0c2139SMatthew G Knepley PetscInt *closure = NULL; 1797cd0c2139SMatthew G Knepley PetscInt closureSize, cl; 1798cd0c2139SMatthew G Knepley 1799*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexGetTransitiveClosure(dm, point, PETSC_TRUE, &closureSize, &closure)); 1800cd0c2139SMatthew G Knepley for (cl = 0; cl < closureSize*2; cl += 2) { 1801cd0c2139SMatthew G Knepley const PetscInt clp = closure[cl]; 1802a0541d8aSMatthew G. Knepley PetscInt bval = -1; 1803cd0c2139SMatthew G Knepley 1804*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMLabelGetValue(label, clp, &val)); 1805*5f80ce2aSJacob Faibussowitsch if (blabel) CHKERRQ(DMLabelGetValue(blabel, clp, &bval)); 1806a0541d8aSMatthew G. Knepley if ((val >= 0) && (val < dim-1) && (bval < 0)) { 1807*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMLabelSetValue(label, point, pos == PETSC_TRUE ? shift+dim-1 : -(shift+dim-1))); 1808cd0c2139SMatthew G Knepley break; 1809cd0c2139SMatthew G Knepley } 1810cd0c2139SMatthew G Knepley } 1811*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexRestoreTransitiveClosure(dm, point, PETSC_TRUE, &closureSize, &closure)); 1812cd0c2139SMatthew G Knepley } 1813cd0c2139SMatthew G Knepley } 1814cd0c2139SMatthew G Knepley } 1815cd0c2139SMatthew G Knepley } 1816*5f80ce2aSJacob Faibussowitsch CHKERRQ(ISRestoreIndices(dimIS, &points)); 1817*5f80ce2aSJacob Faibussowitsch CHKERRQ(ISDestroy(&dimIS)); 1818*5f80ce2aSJacob Faibussowitsch if (subpointIS) CHKERRQ(ISRestoreIndices(subpointIS, &subpoints)); 1819a0541d8aSMatthew G. Knepley /* Mark boundary points as unsplit */ 182086200784SMatthew G. Knepley if (blabel) { 1821*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMLabelGetStratumIS(blabel, 1, &dimIS)); 1822*5f80ce2aSJacob Faibussowitsch CHKERRQ(ISGetLocalSize(dimIS, &numPoints)); 1823*5f80ce2aSJacob Faibussowitsch CHKERRQ(ISGetIndices(dimIS, &points)); 1824a0541d8aSMatthew G. Knepley for (p = 0; p < numPoints; ++p) { 1825a0541d8aSMatthew G. Knepley const PetscInt point = points[p]; 1826a0541d8aSMatthew G. Knepley PetscInt val, bval; 1827a0541d8aSMatthew G. Knepley 1828*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMLabelGetValue(blabel, point, &bval)); 1829a0541d8aSMatthew G. Knepley if (bval >= 0) { 1830*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMLabelGetValue(label, point, &val)); 1831f7019248SMatthew G. Knepley if ((val < 0) || (val > dim)) { 1832f7019248SMatthew G. Knepley /* This could be a point added from splitting a vertex on an adjacent fault, otherwise its just wrong */ 1833*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMLabelClearValue(blabel, point, bval)); 1834f7019248SMatthew G. Knepley } 1835f7019248SMatthew G. Knepley } 1836f7019248SMatthew G. Knepley } 1837f7019248SMatthew G. Knepley for (p = 0; p < numPoints; ++p) { 1838f7019248SMatthew G. Knepley const PetscInt point = points[p]; 1839f7019248SMatthew G. Knepley PetscInt val, bval; 1840f7019248SMatthew G. Knepley 1841*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMLabelGetValue(blabel, point, &bval)); 1842f7019248SMatthew G. Knepley if (bval >= 0) { 184386200784SMatthew G. Knepley const PetscInt *cone, *support; 184486200784SMatthew G. Knepley PetscInt coneSize, supportSize, s, valA, valB, valE; 184586200784SMatthew G. Knepley 1846a0541d8aSMatthew G. Knepley /* Mark as unsplit */ 1847*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMLabelGetValue(label, point, &val)); 18482c71b3e2SJacob Faibussowitsch PetscCheckFalse((val < 0) || (val > dim),PETSC_COMM_SELF, PETSC_ERR_PLIB, "Point %d has label value %d, should be part of the fault", point, val); 1849*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMLabelClearValue(label, point, val)); 1850*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMLabelSetValue(label, point, shift2+val)); 18512c06a818SMatthew G. Knepley /* Check for cross-edge 18522c06a818SMatthew G. Knepley A cross-edge has endpoints which are both on the boundary of the surface, but the edge itself is not. */ 185386200784SMatthew G. Knepley if (val != 0) continue; 1854*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexGetSupport(dm, point, &support)); 1855*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexGetSupportSize(dm, point, &supportSize)); 185686200784SMatthew G. Knepley for (s = 0; s < supportSize; ++s) { 1857*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexGetCone(dm, support[s], &cone)); 1858*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexGetConeSize(dm, support[s], &coneSize)); 18592c71b3e2SJacob Faibussowitsch PetscCheckFalse(coneSize != 2,PETSC_COMM_SELF, PETSC_ERR_PLIB, "Edge %D has %D vertices != 2", support[s], coneSize); 1860*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMLabelGetValue(blabel, cone[0], &valA)); 1861*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMLabelGetValue(blabel, cone[1], &valB)); 1862*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMLabelGetValue(blabel, support[s], &valE)); 1863*5f80ce2aSJacob Faibussowitsch if ((valE < 0) && (valA >= 0) && (valB >= 0) && (cone[0] != cone[1])) CHKERRQ(DMLabelSetValue(blabel, support[s], 2)); 186486200784SMatthew G. Knepley } 1865a0541d8aSMatthew G. Knepley } 1866a0541d8aSMatthew G. Knepley } 1867*5f80ce2aSJacob Faibussowitsch CHKERRQ(ISRestoreIndices(dimIS, &points)); 1868*5f80ce2aSJacob Faibussowitsch CHKERRQ(ISDestroy(&dimIS)); 1869a0541d8aSMatthew G. Knepley } 1870cd0c2139SMatthew G Knepley /* Search for other cells/faces/edges connected to the fault by a vertex */ 1871*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexGetDepthStratum(dm, 0, &vStart, &vEnd)); 1872*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexGetSimplexOrBoxCells(dm, 0, &cStart, &cEnd)); 1873*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMLabelGetStratumIS(label, 0, &dimIS)); 18747d2fefb6SMatthew G. Knepley /* TODO Why are we including cross edges here? Shouldn't they be in the star of boundary vertices? */ 1875*5f80ce2aSJacob Faibussowitsch if (blabel) CHKERRQ(DMLabelGetStratumIS(blabel, 2, &crossEdgeIS)); 187686200784SMatthew G. Knepley if (dimIS && crossEdgeIS) { 187786200784SMatthew G. Knepley IS vertIS = dimIS; 187886200784SMatthew G. Knepley 1879*5f80ce2aSJacob Faibussowitsch CHKERRQ(ISExpand(vertIS, crossEdgeIS, &dimIS)); 1880*5f80ce2aSJacob Faibussowitsch CHKERRQ(ISDestroy(&crossEdgeIS)); 1881*5f80ce2aSJacob Faibussowitsch CHKERRQ(ISDestroy(&vertIS)); 188286200784SMatthew G. Knepley } 1883dc86033cSMatthew G. Knepley if (!dimIS) { 1884dc86033cSMatthew G. Knepley PetscFunctionReturn(0); 1885dc86033cSMatthew G. Knepley } 1886*5f80ce2aSJacob Faibussowitsch CHKERRQ(ISGetLocalSize(dimIS, &numPoints)); 1887*5f80ce2aSJacob Faibussowitsch CHKERRQ(ISGetIndices(dimIS, &points)); 1888d7c8f101SMatthew G. Knepley for (p = 0; p < numPoints; ++p) { /* Loop over fault vertices */ 1889cd0c2139SMatthew G Knepley PetscInt *star = NULL; 189086200784SMatthew G. Knepley PetscInt starSize, s; 1891cd0c2139SMatthew G Knepley PetscInt again = 1; /* 0: Finished 1: Keep iterating after a change 2: No change */ 1892cd0c2139SMatthew G Knepley 1893d4622b2cSMatthew G. Knepley /* All points connected to the fault are inside a cell, so at the top level we will only check cells */ 1894*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexGetTransitiveClosure(dm, points[p], PETSC_FALSE, &starSize, &star)); 1895cd0c2139SMatthew G Knepley while (again) { 18962c71b3e2SJacob Faibussowitsch PetscCheckFalse(again > 1,PetscObjectComm((PetscObject)dm), PETSC_ERR_PLIB, "Could not classify all cells connected to the fault"); 1897cd0c2139SMatthew G Knepley again = 0; 1898cd0c2139SMatthew G Knepley for (s = 0; s < starSize*2; s += 2) { 1899cd0c2139SMatthew G Knepley const PetscInt point = star[s]; 1900cd0c2139SMatthew G Knepley const PetscInt *cone; 1901cd0c2139SMatthew G Knepley PetscInt coneSize, c; 1902cd0c2139SMatthew G Knepley 1903412e9a14SMatthew G. Knepley if ((point < cStart) || (point >= cEnd)) continue; 1904*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMLabelGetValue(label, point, &val)); 1905cd0c2139SMatthew G Knepley if (val != -1) continue; 1906d4622b2cSMatthew G. Knepley again = again == 1 ? 1 : 2; 1907*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexGetConeSize(dm, point, &coneSize)); 1908*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexGetCone(dm, point, &cone)); 1909cd0c2139SMatthew G Knepley for (c = 0; c < coneSize; ++c) { 1910*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMLabelGetValue(label, cone[c], &val)); 1911cd0c2139SMatthew G Knepley if (val != -1) { 1912d7c8f101SMatthew G. Knepley const PetscInt *ccone; 1913166d9d0cSMatthew G. Knepley PetscInt cconeSize, cc, side; 1914d7c8f101SMatthew G. Knepley 19152c71b3e2SJacob Faibussowitsch PetscCheckFalse(PetscAbs(val) < shift,PetscObjectComm((PetscObject)dm), PETSC_ERR_PLIB, "Face %d on cell %d has an invalid label %d", cone[c], point, val); 191637a6de01SMatthew G. Knepley if (val > 0) side = 1; 191737a6de01SMatthew G. Knepley else side = -1; 1918*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMLabelSetValue(label, point, side*(shift+dim))); 1919d7c8f101SMatthew G. Knepley /* Mark cell faces which touch the fault */ 1920*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexGetConeSize(dm, point, &cconeSize)); 1921*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexGetCone(dm, point, &ccone)); 1922d7c8f101SMatthew G. Knepley for (cc = 0; cc < cconeSize; ++cc) { 1923d7c8f101SMatthew G. Knepley PetscInt *closure = NULL; 1924d7c8f101SMatthew G. Knepley PetscInt closureSize, cl; 1925d7c8f101SMatthew G. Knepley 1926*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMLabelGetValue(label, ccone[cc], &val)); 1927166d9d0cSMatthew G. Knepley if (val != -1) continue; 1928*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexGetTransitiveClosure(dm, ccone[cc], PETSC_TRUE, &closureSize, &closure)); 1929d4622b2cSMatthew G. Knepley for (cl = 0; cl < closureSize*2; cl += 2) { 1930d7c8f101SMatthew G. Knepley const PetscInt clp = closure[cl]; 1931d7c8f101SMatthew G. Knepley 1932*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMLabelGetValue(label, clp, &val)); 1933d7c8f101SMatthew G. Knepley if (val == -1) continue; 1934*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMLabelSetValue(label, ccone[cc], side*(shift+dim-1))); 193537a6de01SMatthew G. Knepley break; 193637a6de01SMatthew G. Knepley } 1937*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexRestoreTransitiveClosure(dm, ccone[cc], PETSC_TRUE, &closureSize, &closure)); 1938cd0c2139SMatthew G Knepley } 1939cd0c2139SMatthew G Knepley again = 1; 1940cd0c2139SMatthew G Knepley break; 1941cd0c2139SMatthew G Knepley } 1942cd0c2139SMatthew G Knepley } 1943cd0c2139SMatthew G Knepley } 1944cd0c2139SMatthew G Knepley } 1945cd0c2139SMatthew G Knepley /* Classify the rest by cell membership */ 1946cd0c2139SMatthew G Knepley for (s = 0; s < starSize*2; s += 2) { 1947cd0c2139SMatthew G Knepley const PetscInt point = star[s]; 1948cd0c2139SMatthew G Knepley 1949*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMLabelGetValue(label, point, &val)); 1950cd0c2139SMatthew G Knepley if (val == -1) { 1951cd0c2139SMatthew G Knepley PetscInt *sstar = NULL; 1952cd0c2139SMatthew G Knepley PetscInt sstarSize, ss; 1953412e9a14SMatthew G. Knepley PetscBool marked = PETSC_FALSE, isHybrid; 1954cd0c2139SMatthew G Knepley 1955*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexGetTransitiveClosure(dm, point, PETSC_FALSE, &sstarSize, &sstar)); 1956cd0c2139SMatthew G Knepley for (ss = 0; ss < sstarSize*2; ss += 2) { 1957cd0c2139SMatthew G Knepley const PetscInt spoint = sstar[ss]; 1958cd0c2139SMatthew G Knepley 1959412e9a14SMatthew G. Knepley if ((spoint < cStart) || (spoint >= cEnd)) continue; 1960*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMLabelGetValue(label, spoint, &val)); 19612c71b3e2SJacob Faibussowitsch PetscCheckFalse(val == -1,PetscObjectComm((PetscObject)dm), PETSC_ERR_PLIB, "Cell %d in star of %d does not have a valid label", spoint, point); 1962*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMLabelGetValue(depthLabel, point, &dep)); 1963cd0c2139SMatthew G Knepley if (val > 0) { 1964*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMLabelSetValue(label, point, shift+dep)); 1965cd0c2139SMatthew G Knepley } else { 1966*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMLabelSetValue(label, point, -(shift+dep))); 1967cd0c2139SMatthew G Knepley } 1968cd0c2139SMatthew G Knepley marked = PETSC_TRUE; 1969cd0c2139SMatthew G Knepley break; 1970cd0c2139SMatthew G Knepley } 1971*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexRestoreTransitiveClosure(dm, point, PETSC_FALSE, &sstarSize, &sstar)); 1972*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexCellIsHybrid_Internal(dm, point, &isHybrid)); 19732c71b3e2SJacob Faibussowitsch PetscCheckFalse(!isHybrid && !marked,PetscObjectComm((PetscObject)dm), PETSC_ERR_PLIB, "Point %d could not be classified", point); 1974cd0c2139SMatthew G Knepley } 1975cd0c2139SMatthew G Knepley } 1976*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexRestoreTransitiveClosure(dm, points[p], PETSC_FALSE, &starSize, &star)); 1977cd0c2139SMatthew G Knepley } 1978*5f80ce2aSJacob Faibussowitsch CHKERRQ(ISRestoreIndices(dimIS, &points)); 1979*5f80ce2aSJacob Faibussowitsch CHKERRQ(ISDestroy(&dimIS)); 19807d2fefb6SMatthew G. Knepley /* If any faces touching the fault divide cells on either side, split them 19817d2fefb6SMatthew G. Knepley This only occurs without a surface boundary */ 1982*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMLabelGetStratumIS(label, shift+dim-1, &facePosIS)); 1983*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMLabelGetStratumIS(label, -(shift+dim-1), &faceNegIS)); 1984*5f80ce2aSJacob Faibussowitsch CHKERRQ(ISExpand(facePosIS, faceNegIS, &dimIS)); 1985*5f80ce2aSJacob Faibussowitsch CHKERRQ(ISDestroy(&facePosIS)); 1986*5f80ce2aSJacob Faibussowitsch CHKERRQ(ISDestroy(&faceNegIS)); 1987*5f80ce2aSJacob Faibussowitsch CHKERRQ(ISGetLocalSize(dimIS, &numPoints)); 1988*5f80ce2aSJacob Faibussowitsch CHKERRQ(ISGetIndices(dimIS, &points)); 198918c5995bSMatthew G. Knepley for (p = 0; p < numPoints; ++p) { 199018c5995bSMatthew G. Knepley const PetscInt point = points[p]; 199118c5995bSMatthew G. Knepley const PetscInt *support; 199218c5995bSMatthew G. Knepley PetscInt supportSize, valA, valB; 199318c5995bSMatthew G. Knepley 1994*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexGetSupportSize(dm, point, &supportSize)); 199518c5995bSMatthew G. Knepley if (supportSize != 2) continue; 1996*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexGetSupport(dm, point, &support)); 1997*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMLabelGetValue(label, support[0], &valA)); 1998*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMLabelGetValue(label, support[1], &valB)); 199918c5995bSMatthew G. Knepley if ((valA == -1) || (valB == -1)) continue; 200018c5995bSMatthew G. Knepley if (valA*valB > 0) continue; 200118c5995bSMatthew G. Knepley /* Split the face */ 2002*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMLabelGetValue(label, point, &valA)); 2003*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMLabelClearValue(label, point, valA)); 2004*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMLabelSetValue(label, point, dim-1)); 2005e1757548SMatthew G. Knepley /* Label its closure: 2006e1757548SMatthew G. Knepley unmarked: label as unsplit 2007e1757548SMatthew G. Knepley incident: relabel as split 2008e1757548SMatthew G. Knepley split: do nothing 2009e1757548SMatthew G. Knepley */ 201018c5995bSMatthew G. Knepley { 201118c5995bSMatthew G. Knepley PetscInt *closure = NULL; 201218c5995bSMatthew G. Knepley PetscInt closureSize, cl; 201318c5995bSMatthew G. Knepley 2014*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexGetTransitiveClosure(dm, point, PETSC_TRUE, &closureSize, &closure)); 201518c5995bSMatthew G. Knepley for (cl = 0; cl < closureSize*2; cl += 2) { 2016*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMLabelGetValue(label, closure[cl], &valA)); 20178771c1d3SMatthew G. Knepley if (valA == -1) { /* Mark as unsplit */ 2018*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMLabelGetValue(depthLabel, closure[cl], &dep)); 2019*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMLabelSetValue(label, closure[cl], shift2+dep)); 20208771c1d3SMatthew G. Knepley } else if (((valA >= shift) && (valA < shift2)) || ((valA <= -shift) && (valA > -shift2))) { 2021*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMLabelGetValue(depthLabel, closure[cl], &dep)); 2022*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMLabelClearValue(label, closure[cl], valA)); 2023*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMLabelSetValue(label, closure[cl], dep)); 2024e1757548SMatthew G. Knepley } 202518c5995bSMatthew G. Knepley } 2026*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexRestoreTransitiveClosure(dm, point, PETSC_TRUE, &closureSize, &closure)); 202718c5995bSMatthew G. Knepley } 202818c5995bSMatthew G. Knepley } 2029*5f80ce2aSJacob Faibussowitsch CHKERRQ(ISRestoreIndices(dimIS, &points)); 2030*5f80ce2aSJacob Faibussowitsch CHKERRQ(ISDestroy(&dimIS)); 2031cd0c2139SMatthew G Knepley PetscFunctionReturn(0); 2032cd0c2139SMatthew G Knepley } 2033cd0c2139SMatthew G Knepley 2034720e594eSMatthew G. Knepley /* Check that no cell have all vertices on the fault */ 2035720e594eSMatthew G. Knepley PetscErrorCode DMPlexCheckValidSubmesh_Private(DM dm, DMLabel label, DM subdm) 2036720e594eSMatthew G. Knepley { 2037720e594eSMatthew G. Knepley IS subpointIS; 2038720e594eSMatthew G. Knepley const PetscInt *dmpoints; 2039720e594eSMatthew G. Knepley PetscInt defaultValue, cStart, cEnd, c, vStart, vEnd; 2040720e594eSMatthew G. Knepley 2041720e594eSMatthew G. Knepley PetscFunctionBegin; 2042720e594eSMatthew G. Knepley if (!label) PetscFunctionReturn(0); 2043*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMLabelGetDefaultValue(label, &defaultValue)); 2044*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexGetSubpointIS(subdm, &subpointIS)); 2045720e594eSMatthew G. Knepley if (!subpointIS) PetscFunctionReturn(0); 2046*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexGetHeightStratum(subdm, 0, &cStart, &cEnd)); 2047*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexGetDepthStratum(dm, 0, &vStart, &vEnd)); 2048*5f80ce2aSJacob Faibussowitsch CHKERRQ(ISGetIndices(subpointIS, &dmpoints)); 2049720e594eSMatthew G. Knepley for (c = cStart; c < cEnd; ++c) { 2050720e594eSMatthew G. Knepley PetscBool invalidCell = PETSC_TRUE; 2051720e594eSMatthew G. Knepley PetscInt *closure = NULL; 2052720e594eSMatthew G. Knepley PetscInt closureSize, cl; 2053720e594eSMatthew G. Knepley 2054*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexGetTransitiveClosure(dm, dmpoints[c], PETSC_TRUE, &closureSize, &closure)); 2055720e594eSMatthew G. Knepley for (cl = 0; cl < closureSize*2; cl += 2) { 2056720e594eSMatthew G. Knepley PetscInt value = 0; 2057720e594eSMatthew G. Knepley 2058720e594eSMatthew G. Knepley if ((closure[cl] < vStart) || (closure[cl] >= vEnd)) continue; 2059*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMLabelGetValue(label, closure[cl], &value)); 2060720e594eSMatthew G. Knepley if (value == defaultValue) {invalidCell = PETSC_FALSE; break;} 2061720e594eSMatthew G. Knepley } 2062*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexRestoreTransitiveClosure(dm, dmpoints[c], PETSC_TRUE, &closureSize, &closure)); 2063720e594eSMatthew G. Knepley if (invalidCell) { 2064*5f80ce2aSJacob Faibussowitsch CHKERRQ(ISRestoreIndices(subpointIS, &dmpoints)); 2065*5f80ce2aSJacob Faibussowitsch CHKERRQ(ISDestroy(&subpointIS)); 2066*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMDestroy(&subdm)); 206798921bdaSJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Ambiguous submesh. Cell %D has all of its vertices on the submesh.", dmpoints[c]); 2068720e594eSMatthew G. Knepley } 2069720e594eSMatthew G. Knepley } 2070*5f80ce2aSJacob Faibussowitsch CHKERRQ(ISRestoreIndices(subpointIS, &dmpoints)); 2071720e594eSMatthew G. Knepley PetscFunctionReturn(0); 2072720e594eSMatthew G. Knepley } 2073720e594eSMatthew G. Knepley 2074c08575a3SMatthew G. Knepley /*@ 20753cf72582SMatthew G. Knepley DMPlexCreateHybridMesh - Create a mesh with hybrid cells along an internal interface 20763cf72582SMatthew G. Knepley 20773cf72582SMatthew G. Knepley Collective on dm 20783cf72582SMatthew G. Knepley 20793cf72582SMatthew G. Knepley Input Parameters: 20803cf72582SMatthew G. Knepley + dm - The original DM 2081720e594eSMatthew G. Knepley . label - The label specifying the interface vertices 2082720e594eSMatthew G. Knepley - bdlabel - The optional label specifying the interface boundary vertices 20833cf72582SMatthew G. Knepley 20843cf72582SMatthew G. Knepley Output Parameters: 20857db7e0a7SMatthew G. Knepley + hybridLabel - The label fully marking the interface, or NULL if no output is desired 20867db7e0a7SMatthew G. Knepley . splitLabel - The label containing the split points, or NULL if no output is desired 2087720e594eSMatthew G. Knepley . dmInterface - The new interface DM, or NULL 2088720e594eSMatthew G. Knepley - dmHybrid - The new DM with cohesive cells 20893cf72582SMatthew G. Knepley 20906eccb800SMatthew Knepley Note: The hybridLabel indicates what parts of the original mesh impinged on the on division surface. For points 20916eccb800SMatthew Knepley directly on the division surface, they are labeled with their dimension, so an edge 7 on the division surface would be 20926eccb800SMatthew Knepley 7 (1) in hybridLabel. For points that impinge from the positive side, they are labeled with 100+dim, so an edge 6 with 20936eccb800SMatthew Knepley one vertex 3 on the surface would be 6 (101) and 3 (0) in hybridLabel. If an edge 9 from the negative side of the 20946eccb800SMatthew Knepley surface also hits vertex 3, it would be 9 (-101) in hybridLabel. 20956eccb800SMatthew Knepley 20966eccb800SMatthew Knepley The splitLabel indicates what points in the new hybrid mesh were the result of splitting points in the original 20976eccb800SMatthew Knepley mesh. The label value is +=100+dim for each point. For example, if two edges 10 and 14 in the hybrid resulting from 20986eccb800SMatthew Knepley splitting an edge in the original mesh, you would have 10 (101) and 14 (-101) in the splitLabel. 20996eccb800SMatthew Knepley 21006eccb800SMatthew Knepley The dmInterface is a DM built from the original division surface. It has a label which can be retrieved using 21016eccb800SMatthew Knepley DMPlexGetSubpointMap() which maps each point back to the point in the surface of the original mesh. 21026eccb800SMatthew Knepley 21033cf72582SMatthew G. Knepley Level: developer 21043cf72582SMatthew G. Knepley 21056eccb800SMatthew Knepley .seealso: DMPlexConstructCohesiveCells(), DMPlexLabelCohesiveComplete(), DMPlexGetSubpointMap(), DMCreate() 21063cf72582SMatthew G. Knepley @*/ 21077db7e0a7SMatthew G. Knepley PetscErrorCode DMPlexCreateHybridMesh(DM dm, DMLabel label, DMLabel bdlabel, DMLabel *hybridLabel, DMLabel *splitLabel, DM *dmInterface, DM *dmHybrid) 21083cf72582SMatthew G. Knepley { 21093cf72582SMatthew G. Knepley DM idm; 21107db7e0a7SMatthew G. Knepley DMLabel subpointMap, hlabel, slabel = NULL; 21113cf72582SMatthew G. Knepley PetscInt dim; 21123cf72582SMatthew G. Knepley 21133cf72582SMatthew G. Knepley PetscFunctionBegin; 21143cf72582SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 2115720e594eSMatthew G. Knepley if (bdlabel) PetscValidPointer(bdlabel, 3); 2116720e594eSMatthew G. Knepley if (hybridLabel) PetscValidPointer(hybridLabel, 4); 21177db7e0a7SMatthew G. Knepley if (splitLabel) PetscValidPointer(splitLabel, 5); 21187db7e0a7SMatthew G. Knepley if (dmInterface) PetscValidPointer(dmInterface, 6); 21197db7e0a7SMatthew G. Knepley PetscValidPointer(dmHybrid, 7); 2120*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMGetDimension(dm, &dim)); 2121*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexCreateSubmesh(dm, label, 1, PETSC_FALSE, &idm)); 2122*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexCheckValidSubmesh_Private(dm, label, idm)); 2123*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexOrient(idm)); 2124*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexGetSubpointMap(idm, &subpointMap)); 2125*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMLabelDuplicate(subpointMap, &hlabel)); 2126*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMLabelClearStratum(hlabel, dim)); 21277db7e0a7SMatthew G. Knepley if (splitLabel) { 21287db7e0a7SMatthew G. Knepley const char *name; 21297db7e0a7SMatthew G. Knepley char sname[PETSC_MAX_PATH_LEN]; 21307db7e0a7SMatthew G. Knepley 2131*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscObjectGetName((PetscObject) hlabel, &name)); 2132*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscStrncpy(sname, name, PETSC_MAX_PATH_LEN)); 2133*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscStrcat(sname, " split")); 2134*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMLabelCreate(PETSC_COMM_SELF, sname, &slabel)); 21357db7e0a7SMatthew G. Knepley } 2136*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexLabelCohesiveComplete(dm, hlabel, bdlabel, PETSC_FALSE, idm)); 2137720e594eSMatthew G. Knepley if (dmInterface) {*dmInterface = idm;} 2138*5f80ce2aSJacob Faibussowitsch else CHKERRQ(DMDestroy(&idm)); 2139*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexConstructCohesiveCells(dm, hlabel, slabel, dmHybrid)); 2140*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexCopy_Internal(dm, PETSC_TRUE, *dmHybrid)); 21413cf72582SMatthew G. Knepley if (hybridLabel) *hybridLabel = hlabel; 2142*5f80ce2aSJacob Faibussowitsch else CHKERRQ(DMLabelDestroy(&hlabel)); 21437db7e0a7SMatthew G. Knepley if (splitLabel) *splitLabel = slabel; 21444a7ee7d0SMatthew G. Knepley { 21454a7ee7d0SMatthew G. Knepley DM cdm; 21464a7ee7d0SMatthew G. Knepley DMLabel ctLabel; 21474a7ee7d0SMatthew G. Knepley 21484a7ee7d0SMatthew G. Knepley /* We need to somehow share the celltype label with the coordinate dm */ 2149*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMGetCoordinateDM(*dmHybrid, &cdm)); 2150*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexGetCellTypeLabel(*dmHybrid, &ctLabel)); 2151*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMSetLabel(cdm, ctLabel)); 21524a7ee7d0SMatthew G. Knepley } 2153cd0c2139SMatthew G Knepley PetscFunctionReturn(0); 2154cd0c2139SMatthew G Knepley } 2155cd0c2139SMatthew G Knepley 2156efa14ee0SMatthew G Knepley /* Here we need the explicit assumption that: 2157efa14ee0SMatthew G Knepley 2158efa14ee0SMatthew G Knepley For any marked cell, the marked vertices constitute a single face 2159efa14ee0SMatthew G Knepley */ 2160830e53efSMatthew G. Knepley static PetscErrorCode DMPlexMarkSubmesh_Uninterpolated(DM dm, DMLabel vertexLabel, PetscInt value, DMLabel subpointMap, PetscInt *numFaces, PetscInt *nFV, DM subdm) 2161efa14ee0SMatthew G Knepley { 2162fed694aaSMatthew G. Knepley IS subvertexIS = NULL; 2163efa14ee0SMatthew G Knepley const PetscInt *subvertices; 2164412e9a14SMatthew G. Knepley PetscInt *pStart, *pEnd, pSize; 2165efa14ee0SMatthew G Knepley PetscInt depth, dim, d, numSubVerticesInitial = 0, v; 2166efa14ee0SMatthew G Knepley 2167efa14ee0SMatthew G Knepley PetscFunctionBegin; 2168efa14ee0SMatthew G Knepley *numFaces = 0; 2169efa14ee0SMatthew G Knepley *nFV = 0; 2170*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexGetDepth(dm, &depth)); 2171*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMGetDimension(dm, &dim)); 217277d178adSMatthew G. Knepley pSize = PetscMax(depth, dim) + 1; 2173*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscMalloc2(pSize, &pStart, pSize, &pEnd)); 2174efa14ee0SMatthew G Knepley for (d = 0; d <= depth; ++d) { 2175*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexGetSimplexOrBoxCells(dm, depth-d, &pStart[d], &pEnd[d])); 2176efa14ee0SMatthew G Knepley } 2177efa14ee0SMatthew G Knepley /* Loop over initial vertices and mark all faces in the collective star() */ 2178*5f80ce2aSJacob Faibussowitsch if (vertexLabel) CHKERRQ(DMLabelGetStratumIS(vertexLabel, value, &subvertexIS)); 2179efa14ee0SMatthew G Knepley if (subvertexIS) { 2180*5f80ce2aSJacob Faibussowitsch CHKERRQ(ISGetSize(subvertexIS, &numSubVerticesInitial)); 2181*5f80ce2aSJacob Faibussowitsch CHKERRQ(ISGetIndices(subvertexIS, &subvertices)); 2182efa14ee0SMatthew G Knepley } 2183efa14ee0SMatthew G Knepley for (v = 0; v < numSubVerticesInitial; ++v) { 2184efa14ee0SMatthew G Knepley const PetscInt vertex = subvertices[v]; 21850298fd71SBarry Smith PetscInt *star = NULL; 2186efa14ee0SMatthew G Knepley PetscInt starSize, s, numCells = 0, c; 2187efa14ee0SMatthew G Knepley 2188*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexGetTransitiveClosure(dm, vertex, PETSC_FALSE, &starSize, &star)); 2189efa14ee0SMatthew G Knepley for (s = 0; s < starSize*2; s += 2) { 2190efa14ee0SMatthew G Knepley const PetscInt point = star[s]; 2191efa14ee0SMatthew G Knepley if ((point >= pStart[depth]) && (point < pEnd[depth])) star[numCells++] = point; 2192efa14ee0SMatthew G Knepley } 2193efa14ee0SMatthew G Knepley for (c = 0; c < numCells; ++c) { 2194efa14ee0SMatthew G Knepley const PetscInt cell = star[c]; 21950298fd71SBarry Smith PetscInt *closure = NULL; 2196efa14ee0SMatthew G Knepley PetscInt closureSize, cl; 2197efa14ee0SMatthew G Knepley PetscInt cellLoc, numCorners = 0, faceSize = 0; 2198efa14ee0SMatthew G Knepley 2199*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMLabelGetValue(subpointMap, cell, &cellLoc)); 220065560c7fSMatthew G Knepley if (cellLoc == 2) continue; 22012c71b3e2SJacob Faibussowitsch PetscCheckFalse(cellLoc >= 0,PetscObjectComm((PetscObject)dm), PETSC_ERR_PLIB, "Cell %d has dimension %d in the surface label", cell, cellLoc); 2202*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexGetTransitiveClosure(dm, cell, PETSC_TRUE, &closureSize, &closure)); 2203efa14ee0SMatthew G Knepley for (cl = 0; cl < closureSize*2; cl += 2) { 2204efa14ee0SMatthew G Knepley const PetscInt point = closure[cl]; 2205efa14ee0SMatthew G Knepley PetscInt vertexLoc; 2206efa14ee0SMatthew G Knepley 2207efa14ee0SMatthew G Knepley if ((point >= pStart[0]) && (point < pEnd[0])) { 2208efa14ee0SMatthew G Knepley ++numCorners; 2209*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMLabelGetValue(vertexLabel, point, &vertexLoc)); 2210830e53efSMatthew G. Knepley if (vertexLoc == value) closure[faceSize++] = point; 2211efa14ee0SMatthew G Knepley } 2212efa14ee0SMatthew G Knepley } 2213*5f80ce2aSJacob Faibussowitsch if (!(*nFV)) CHKERRQ(DMPlexGetNumFaceVertices(dm, dim, numCorners, nFV)); 22142c71b3e2SJacob Faibussowitsch PetscCheckFalse(faceSize > *nFV,PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Invalid submesh: Too many vertices %d of an element on the surface", faceSize); 2215efa14ee0SMatthew G Knepley if (faceSize == *nFV) { 2216007baee2SMatthew G. Knepley const PetscInt *cells = NULL; 2217007baee2SMatthew G. Knepley PetscInt numCells, nc; 2218007baee2SMatthew G. Knepley 2219efa14ee0SMatthew G Knepley ++(*numFaces); 2220efa14ee0SMatthew G Knepley for (cl = 0; cl < faceSize; ++cl) { 2221*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMLabelSetValue(subpointMap, closure[cl], 0)); 2222efa14ee0SMatthew G Knepley } 2223*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexGetJoin(dm, faceSize, closure, &numCells, &cells)); 2224007baee2SMatthew G. Knepley for (nc = 0; nc < numCells; ++nc) { 2225*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMLabelSetValue(subpointMap, cells[nc], 2)); 2226007baee2SMatthew G. Knepley } 2227*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexRestoreJoin(dm, faceSize, closure, &numCells, &cells)); 2228efa14ee0SMatthew G Knepley } 2229*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexRestoreTransitiveClosure(dm, cell, PETSC_TRUE, &closureSize, &closure)); 2230efa14ee0SMatthew G Knepley } 2231*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexRestoreTransitiveClosure(dm, vertex, PETSC_FALSE, &starSize, &star)); 2232efa14ee0SMatthew G Knepley } 2233efa14ee0SMatthew G Knepley if (subvertexIS) { 2234*5f80ce2aSJacob Faibussowitsch CHKERRQ(ISRestoreIndices(subvertexIS, &subvertices)); 2235efa14ee0SMatthew G Knepley } 2236*5f80ce2aSJacob Faibussowitsch CHKERRQ(ISDestroy(&subvertexIS)); 2237*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscFree2(pStart, pEnd)); 2238efa14ee0SMatthew G Knepley PetscFunctionReturn(0); 2239efa14ee0SMatthew G Knepley } 2240efa14ee0SMatthew G Knepley 2241158acfadSMatthew G. Knepley static PetscErrorCode DMPlexMarkSubmesh_Interpolated(DM dm, DMLabel vertexLabel, PetscInt value, PetscBool markedFaces, DMLabel subpointMap, DM subdm) 2242efa14ee0SMatthew G Knepley { 224334b4c39eSMatthew G. Knepley IS subvertexIS = NULL; 2244efa14ee0SMatthew G Knepley const PetscInt *subvertices; 2245412e9a14SMatthew G. Knepley PetscInt *pStart, *pEnd; 2246efa14ee0SMatthew G Knepley PetscInt dim, d, numSubVerticesInitial = 0, v; 2247efa14ee0SMatthew G Knepley 2248efa14ee0SMatthew G Knepley PetscFunctionBegin; 2249*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMGetDimension(dm, &dim)); 2250*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscMalloc2(dim+1, &pStart, dim+1, &pEnd)); 2251efa14ee0SMatthew G Knepley for (d = 0; d <= dim; ++d) { 2252*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexGetSimplexOrBoxCells(dm, dim-d, &pStart[d], &pEnd[d])); 2253efa14ee0SMatthew G Knepley } 2254efa14ee0SMatthew G Knepley /* Loop over initial vertices and mark all faces in the collective star() */ 225534b4c39eSMatthew G. Knepley if (vertexLabel) { 2256*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMLabelGetStratumIS(vertexLabel, value, &subvertexIS)); 2257efa14ee0SMatthew G Knepley if (subvertexIS) { 2258*5f80ce2aSJacob Faibussowitsch CHKERRQ(ISGetSize(subvertexIS, &numSubVerticesInitial)); 2259*5f80ce2aSJacob Faibussowitsch CHKERRQ(ISGetIndices(subvertexIS, &subvertices)); 2260efa14ee0SMatthew G Knepley } 226134b4c39eSMatthew G. Knepley } 2262efa14ee0SMatthew G Knepley for (v = 0; v < numSubVerticesInitial; ++v) { 2263efa14ee0SMatthew G Knepley const PetscInt vertex = subvertices[v]; 22640298fd71SBarry Smith PetscInt *star = NULL; 2265efa14ee0SMatthew G Knepley PetscInt starSize, s, numFaces = 0, f; 2266efa14ee0SMatthew G Knepley 2267*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexGetTransitiveClosure(dm, vertex, PETSC_FALSE, &starSize, &star)); 2268efa14ee0SMatthew G Knepley for (s = 0; s < starSize*2; s += 2) { 2269efa14ee0SMatthew G Knepley const PetscInt point = star[s]; 2270158acfadSMatthew G. Knepley PetscInt faceLoc; 2271158acfadSMatthew G. Knepley 2272158acfadSMatthew G. Knepley if ((point >= pStart[dim-1]) && (point < pEnd[dim-1])) { 2273158acfadSMatthew G. Knepley if (markedFaces) { 2274*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMLabelGetValue(vertexLabel, point, &faceLoc)); 2275158acfadSMatthew G. Knepley if (faceLoc < 0) continue; 2276158acfadSMatthew G. Knepley } 2277158acfadSMatthew G. Knepley star[numFaces++] = point; 2278158acfadSMatthew G. Knepley } 2279efa14ee0SMatthew G Knepley } 2280efa14ee0SMatthew G Knepley for (f = 0; f < numFaces; ++f) { 2281efa14ee0SMatthew G Knepley const PetscInt face = star[f]; 22820298fd71SBarry Smith PetscInt *closure = NULL; 2283efa14ee0SMatthew G Knepley PetscInt closureSize, c; 2284efa14ee0SMatthew G Knepley PetscInt faceLoc; 2285efa14ee0SMatthew G Knepley 2286*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMLabelGetValue(subpointMap, face, &faceLoc)); 2287efa14ee0SMatthew G Knepley if (faceLoc == dim-1) continue; 22882c71b3e2SJacob Faibussowitsch PetscCheckFalse(faceLoc >= 0,PetscObjectComm((PetscObject)dm), PETSC_ERR_PLIB, "Face %d has dimension %d in the surface label", face, faceLoc); 2289*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexGetTransitiveClosure(dm, face, PETSC_TRUE, &closureSize, &closure)); 2290efa14ee0SMatthew G Knepley for (c = 0; c < closureSize*2; c += 2) { 2291efa14ee0SMatthew G Knepley const PetscInt point = closure[c]; 2292efa14ee0SMatthew G Knepley PetscInt vertexLoc; 2293efa14ee0SMatthew G Knepley 2294efa14ee0SMatthew G Knepley if ((point >= pStart[0]) && (point < pEnd[0])) { 2295*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMLabelGetValue(vertexLabel, point, &vertexLoc)); 2296830e53efSMatthew G. Knepley if (vertexLoc != value) break; 2297efa14ee0SMatthew G Knepley } 2298efa14ee0SMatthew G Knepley } 2299efa14ee0SMatthew G Knepley if (c == closureSize*2) { 2300efa14ee0SMatthew G Knepley const PetscInt *support; 2301efa14ee0SMatthew G Knepley PetscInt supportSize, s; 2302efa14ee0SMatthew G Knepley 2303efa14ee0SMatthew G Knepley for (c = 0; c < closureSize*2; c += 2) { 2304efa14ee0SMatthew G Knepley const PetscInt point = closure[c]; 2305efa14ee0SMatthew G Knepley 2306efa14ee0SMatthew G Knepley for (d = 0; d < dim; ++d) { 2307efa14ee0SMatthew G Knepley if ((point >= pStart[d]) && (point < pEnd[d])) { 2308*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMLabelSetValue(subpointMap, point, d)); 2309efa14ee0SMatthew G Knepley break; 2310efa14ee0SMatthew G Knepley } 2311efa14ee0SMatthew G Knepley } 2312efa14ee0SMatthew G Knepley } 2313*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexGetSupportSize(dm, face, &supportSize)); 2314*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexGetSupport(dm, face, &support)); 2315efa14ee0SMatthew G Knepley for (s = 0; s < supportSize; ++s) { 2316*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMLabelSetValue(subpointMap, support[s], dim)); 2317efa14ee0SMatthew G Knepley } 2318efa14ee0SMatthew G Knepley } 2319*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexRestoreTransitiveClosure(dm, face, PETSC_TRUE, &closureSize, &closure)); 2320efa14ee0SMatthew G Knepley } 2321*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexRestoreTransitiveClosure(dm, vertex, PETSC_FALSE, &starSize, &star)); 2322efa14ee0SMatthew G Knepley } 2323*5f80ce2aSJacob Faibussowitsch if (subvertexIS) CHKERRQ(ISRestoreIndices(subvertexIS, &subvertices)); 2324*5f80ce2aSJacob Faibussowitsch CHKERRQ(ISDestroy(&subvertexIS)); 2325*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscFree2(pStart, pEnd)); 2326efa14ee0SMatthew G Knepley PetscFunctionReturn(0); 2327efa14ee0SMatthew G Knepley } 2328efa14ee0SMatthew G Knepley 232927c04023SMatthew G. Knepley static PetscErrorCode DMPlexMarkCohesiveSubmesh_Uninterpolated(DM dm, PetscBool hasLagrange, const char labelname[], PetscInt value, DMLabel subpointMap, PetscInt *numFaces, PetscInt *nFV, PetscInt *subCells[], DM subdm) 2330766ab985SMatthew G. Knepley { 233127c04023SMatthew G. Knepley DMLabel label = NULL; 2332766ab985SMatthew G. Knepley const PetscInt *cone; 23339fc93327SToby Isaac PetscInt dim, cMax, cEnd, c, subc = 0, p, coneSize = -1; 2334766ab985SMatthew G. Knepley 2335812bfc34SJed Brown PetscFunctionBegin; 2336c0ed958bSJed Brown *numFaces = 0; 2337c0ed958bSJed Brown *nFV = 0; 2338*5f80ce2aSJacob Faibussowitsch if (labelname) CHKERRQ(DMGetLabel(dm, labelname, &label)); 2339fed694aaSMatthew G. Knepley *subCells = NULL; 2340*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMGetDimension(dm, &dim)); 2341*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexGetTensorPrismBounds_Internal(dm, dim, &cMax, &cEnd)); 2342766ab985SMatthew G. Knepley if (cMax < 0) PetscFunctionReturn(0); 234327c04023SMatthew G. Knepley if (label) { 234427c04023SMatthew G. Knepley for (c = cMax; c < cEnd; ++c) { 234527c04023SMatthew G. Knepley PetscInt val; 234627c04023SMatthew G. Knepley 2347*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMLabelGetValue(label, c, &val)); 234827c04023SMatthew G. Knepley if (val == value) { 234927c04023SMatthew G. Knepley ++(*numFaces); 2350*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexGetConeSize(dm, c, &coneSize)); 235127c04023SMatthew G. Knepley } 235227c04023SMatthew G. Knepley } 235327c04023SMatthew G. Knepley } else { 2354766ab985SMatthew G. Knepley *numFaces = cEnd - cMax; 2355*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexGetConeSize(dm, cMax, &coneSize)); 235627c04023SMatthew G. Knepley } 2357*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscMalloc1(*numFaces *2, subCells)); 23589fc93327SToby Isaac if (!(*numFaces)) PetscFunctionReturn(0); 23599fc93327SToby Isaac *nFV = hasLagrange ? coneSize/3 : coneSize/2; 2360766ab985SMatthew G. Knepley for (c = cMax; c < cEnd; ++c) { 2361766ab985SMatthew G. Knepley const PetscInt *cells; 2362766ab985SMatthew G. Knepley PetscInt numCells; 2363766ab985SMatthew G. Knepley 236427c04023SMatthew G. Knepley if (label) { 236527c04023SMatthew G. Knepley PetscInt val; 236627c04023SMatthew G. Knepley 2367*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMLabelGetValue(label, c, &val)); 236827c04023SMatthew G. Knepley if (val != value) continue; 236927c04023SMatthew G. Knepley } 2370*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexGetCone(dm, c, &cone)); 2371766ab985SMatthew G. Knepley for (p = 0; p < *nFV; ++p) { 2372*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMLabelSetValue(subpointMap, cone[p], 0)); 2373766ab985SMatthew G. Knepley } 2374766ab985SMatthew G. Knepley /* Negative face */ 2375*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexGetJoin(dm, *nFV, cone, &numCells, &cells)); 237627234c99SMatthew G. Knepley /* Not true in parallel 23772c71b3e2SJacob Faibussowitsch PetscCheckFalse(numCells != 2,PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Cohesive cells should separate two cells"); */ 2378766ab985SMatthew G. Knepley for (p = 0; p < numCells; ++p) { 2379*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMLabelSetValue(subpointMap, cells[p], 2)); 238027234c99SMatthew G. Knepley (*subCells)[subc++] = cells[p]; 2381766ab985SMatthew G. Knepley } 2382*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexRestoreJoin(dm, *nFV, cone, &numCells, &cells)); 2383766ab985SMatthew G. Knepley /* Positive face is not included */ 2384766ab985SMatthew G. Knepley } 2385766ab985SMatthew G. Knepley PetscFunctionReturn(0); 2386766ab985SMatthew G. Knepley } 2387766ab985SMatthew G. Knepley 23883982b651SMatthew G. Knepley static PetscErrorCode DMPlexMarkCohesiveSubmesh_Interpolated(DM dm, DMLabel label, PetscInt value, DMLabel subpointMap, DM subdm) 2389766ab985SMatthew G. Knepley { 2390766ab985SMatthew G. Knepley PetscInt *pStart, *pEnd; 2391766ab985SMatthew G. Knepley PetscInt dim, cMax, cEnd, c, d; 2392766ab985SMatthew G. Knepley 2393812bfc34SJed Brown PetscFunctionBegin; 2394*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMGetDimension(dm, &dim)); 2395*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexGetTensorPrismBounds_Internal(dm, dim, &cMax, &cEnd)); 2396766ab985SMatthew G. Knepley if (cMax < 0) PetscFunctionReturn(0); 2397*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscMalloc2(dim+1,&pStart,dim+1,&pEnd)); 2398*5f80ce2aSJacob Faibussowitsch for (d = 0; d <= dim; ++d) CHKERRQ(DMPlexGetDepthStratum(dm, d, &pStart[d], &pEnd[d])); 2399766ab985SMatthew G. Knepley for (c = cMax; c < cEnd; ++c) { 2400766ab985SMatthew G. Knepley const PetscInt *cone; 2401766ab985SMatthew G. Knepley PetscInt *closure = NULL; 2402b3154360SMatthew G. Knepley PetscInt fconeSize, coneSize, closureSize, cl, val; 2403766ab985SMatthew G. Knepley 240427c04023SMatthew G. Knepley if (label) { 2405*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMLabelGetValue(label, c, &val)); 240627c04023SMatthew G. Knepley if (val != value) continue; 240727c04023SMatthew G. Knepley } 2408*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexGetConeSize(dm, c, &coneSize)); 2409*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexGetCone(dm, c, &cone)); 2410*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexGetConeSize(dm, cone[0], &fconeSize)); 24112c71b3e2SJacob Faibussowitsch PetscCheckFalse(coneSize != (fconeSize ? fconeSize : 1) + 2,PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Cohesive cells should separate two cells"); 2412b3154360SMatthew G. Knepley /* Negative face */ 2413*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexGetTransitiveClosure(dm, cone[0], PETSC_TRUE, &closureSize, &closure)); 2414766ab985SMatthew G. Knepley for (cl = 0; cl < closureSize*2; cl += 2) { 2415766ab985SMatthew G. Knepley const PetscInt point = closure[cl]; 2416766ab985SMatthew G. Knepley 2417766ab985SMatthew G. Knepley for (d = 0; d <= dim; ++d) { 2418766ab985SMatthew G. Knepley if ((point >= pStart[d]) && (point < pEnd[d])) { 2419*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMLabelSetValue(subpointMap, point, d)); 2420766ab985SMatthew G. Knepley break; 2421766ab985SMatthew G. Knepley } 2422766ab985SMatthew G. Knepley } 2423766ab985SMatthew G. Knepley } 2424*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexRestoreTransitiveClosure(dm, cone[0], PETSC_TRUE, &closureSize, &closure)); 2425766ab985SMatthew G. Knepley /* Cells -- positive face is not included */ 2426766ab985SMatthew G. Knepley for (cl = 0; cl < 1; ++cl) { 2427766ab985SMatthew G. Knepley const PetscInt *support; 2428766ab985SMatthew G. Knepley PetscInt supportSize, s; 2429766ab985SMatthew G. Knepley 2430*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexGetSupportSize(dm, cone[cl], &supportSize)); 24312c71b3e2SJacob Faibussowitsch /* PetscCheckFalse(supportSize != 2,PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Cohesive faces should separate two cells"); */ 2432*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexGetSupport(dm, cone[cl], &support)); 2433766ab985SMatthew G. Knepley for (s = 0; s < supportSize; ++s) { 2434*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMLabelSetValue(subpointMap, support[s], dim)); 2435766ab985SMatthew G. Knepley } 2436766ab985SMatthew G. Knepley } 2437766ab985SMatthew G. Knepley } 2438*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscFree2(pStart, pEnd)); 2439766ab985SMatthew G. Knepley PetscFunctionReturn(0); 2440766ab985SMatthew G. Knepley } 2441766ab985SMatthew G. Knepley 2442c08575a3SMatthew G. Knepley static PetscErrorCode DMPlexGetFaceOrientation(DM dm, PetscInt cell, PetscInt numCorners, PetscInt indices[], PetscInt oppositeVertex, PetscInt origVertices[], PetscInt faceVertices[], PetscBool *posOriented) 2443e6ccafaeSMatthew G Knepley { 244482f516ccSBarry Smith MPI_Comm comm; 2445e6ccafaeSMatthew G Knepley PetscBool posOrient = PETSC_FALSE; 2446e6ccafaeSMatthew G Knepley const PetscInt debug = 0; 2447e6ccafaeSMatthew G Knepley PetscInt cellDim, faceSize, f; 2448e6ccafaeSMatthew G Knepley 244982f516ccSBarry Smith PetscFunctionBegin; 2450*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscObjectGetComm((PetscObject)dm,&comm)); 2451*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMGetDimension(dm, &cellDim)); 2452*5f80ce2aSJacob Faibussowitsch if (debug) CHKERRQ(PetscPrintf(comm, "cellDim: %d numCorners: %d\n", cellDim, numCorners)); 2453e6ccafaeSMatthew G Knepley 2454ddeab2a6SMatthew G. Knepley if (cellDim == 1 && numCorners == 2) { 2455ddeab2a6SMatthew G. Knepley /* Triangle */ 2456e6ccafaeSMatthew G Knepley faceSize = numCorners-1; 2457e6ccafaeSMatthew G Knepley posOrient = !(oppositeVertex%2) ? PETSC_TRUE : PETSC_FALSE; 2458ddeab2a6SMatthew G. Knepley } else if (cellDim == 2 && numCorners == 3) { 2459ddeab2a6SMatthew G. Knepley /* Triangle */ 2460ddeab2a6SMatthew G. Knepley faceSize = numCorners-1; 2461ddeab2a6SMatthew G. Knepley posOrient = !(oppositeVertex%2) ? PETSC_TRUE : PETSC_FALSE; 2462ddeab2a6SMatthew G. Knepley } else if (cellDim == 3 && numCorners == 4) { 2463ddeab2a6SMatthew G. Knepley /* Tetrahedron */ 2464ddeab2a6SMatthew G. Knepley faceSize = numCorners-1; 2465ddeab2a6SMatthew G. Knepley posOrient = (oppositeVertex%2) ? PETSC_TRUE : PETSC_FALSE; 2466e6ccafaeSMatthew G Knepley } else if (cellDim == 1 && numCorners == 3) { 2467e6ccafaeSMatthew G Knepley /* Quadratic line */ 2468e6ccafaeSMatthew G Knepley faceSize = 1; 2469e6ccafaeSMatthew G Knepley posOrient = PETSC_TRUE; 2470e6ccafaeSMatthew G Knepley } else if (cellDim == 2 && numCorners == 4) { 2471e6ccafaeSMatthew G Knepley /* Quads */ 2472e6ccafaeSMatthew G Knepley faceSize = 2; 2473e6ccafaeSMatthew G Knepley if ((indices[1] > indices[0]) && (indices[1] - indices[0] == 1)) { 2474e6ccafaeSMatthew G Knepley posOrient = PETSC_TRUE; 2475e6ccafaeSMatthew G Knepley } else if ((indices[0] == 3) && (indices[1] == 0)) { 2476e6ccafaeSMatthew G Knepley posOrient = PETSC_TRUE; 2477e6ccafaeSMatthew G Knepley } else { 2478e6ccafaeSMatthew G Knepley if (((indices[0] > indices[1]) && (indices[0] - indices[1] == 1)) || ((indices[0] == 0) && (indices[1] == 3))) { 2479e6ccafaeSMatthew G Knepley posOrient = PETSC_FALSE; 2480e6ccafaeSMatthew G Knepley } else SETERRQ(comm, PETSC_ERR_ARG_WRONG, "Invalid quad crossedge"); 2481e6ccafaeSMatthew G Knepley } 2482e6ccafaeSMatthew G Knepley } else if (cellDim == 2 && numCorners == 6) { 2483e6ccafaeSMatthew G Knepley /* Quadratic triangle (I hate this) */ 2484e6ccafaeSMatthew G Knepley /* Edges are determined by the first 2 vertices (corners of edges) */ 2485e6ccafaeSMatthew G Knepley const PetscInt faceSizeTri = 3; 2486e6ccafaeSMatthew G Knepley PetscInt sortedIndices[3], i, iFace; 2487e6ccafaeSMatthew G Knepley PetscBool found = PETSC_FALSE; 2488e6ccafaeSMatthew G Knepley PetscInt faceVerticesTriSorted[9] = { 2489e6ccafaeSMatthew G Knepley 0, 3, 4, /* bottom */ 2490e6ccafaeSMatthew G Knepley 1, 4, 5, /* right */ 2491e6ccafaeSMatthew G Knepley 2, 3, 5, /* left */ 2492e6ccafaeSMatthew G Knepley }; 2493e6ccafaeSMatthew G Knepley PetscInt faceVerticesTri[9] = { 2494e6ccafaeSMatthew G Knepley 0, 3, 4, /* bottom */ 2495e6ccafaeSMatthew G Knepley 1, 4, 5, /* right */ 2496e6ccafaeSMatthew G Knepley 2, 5, 3, /* left */ 2497e6ccafaeSMatthew G Knepley }; 2498e6ccafaeSMatthew G Knepley 2499e6ccafaeSMatthew G Knepley for (i = 0; i < faceSizeTri; ++i) sortedIndices[i] = indices[i]; 2500*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscSortInt(faceSizeTri, sortedIndices)); 2501e6ccafaeSMatthew G Knepley for (iFace = 0; iFace < 3; ++iFace) { 2502e6ccafaeSMatthew G Knepley const PetscInt ii = iFace*faceSizeTri; 2503e6ccafaeSMatthew G Knepley PetscInt fVertex, cVertex; 2504e6ccafaeSMatthew G Knepley 2505e6ccafaeSMatthew G Knepley if ((sortedIndices[0] == faceVerticesTriSorted[ii+0]) && 2506e6ccafaeSMatthew G Knepley (sortedIndices[1] == faceVerticesTriSorted[ii+1])) { 2507e6ccafaeSMatthew G Knepley for (fVertex = 0; fVertex < faceSizeTri; ++fVertex) { 2508e6ccafaeSMatthew G Knepley for (cVertex = 0; cVertex < faceSizeTri; ++cVertex) { 2509e6ccafaeSMatthew G Knepley if (indices[cVertex] == faceVerticesTri[ii+fVertex]) { 2510e6ccafaeSMatthew G Knepley faceVertices[fVertex] = origVertices[cVertex]; 2511e6ccafaeSMatthew G Knepley break; 2512e6ccafaeSMatthew G Knepley } 2513e6ccafaeSMatthew G Knepley } 2514e6ccafaeSMatthew G Knepley } 2515e6ccafaeSMatthew G Knepley found = PETSC_TRUE; 2516e6ccafaeSMatthew G Knepley break; 2517e6ccafaeSMatthew G Knepley } 2518e6ccafaeSMatthew G Knepley } 25192c71b3e2SJacob Faibussowitsch PetscCheckFalse(!found,comm, PETSC_ERR_ARG_WRONG, "Invalid tri crossface"); 2520e6ccafaeSMatthew G Knepley if (posOriented) *posOriented = PETSC_TRUE; 2521e6ccafaeSMatthew G Knepley PetscFunctionReturn(0); 2522e6ccafaeSMatthew G Knepley } else if (cellDim == 2 && numCorners == 9) { 2523e6ccafaeSMatthew G Knepley /* Quadratic quad (I hate this) */ 2524e6ccafaeSMatthew G Knepley /* Edges are determined by the first 2 vertices (corners of edges) */ 2525e6ccafaeSMatthew G Knepley const PetscInt faceSizeQuad = 3; 2526e6ccafaeSMatthew G Knepley PetscInt sortedIndices[3], i, iFace; 2527e6ccafaeSMatthew G Knepley PetscBool found = PETSC_FALSE; 2528e6ccafaeSMatthew G Knepley PetscInt faceVerticesQuadSorted[12] = { 2529e6ccafaeSMatthew G Knepley 0, 1, 4, /* bottom */ 2530e6ccafaeSMatthew G Knepley 1, 2, 5, /* right */ 2531e6ccafaeSMatthew G Knepley 2, 3, 6, /* top */ 2532e6ccafaeSMatthew G Knepley 0, 3, 7, /* left */ 2533e6ccafaeSMatthew G Knepley }; 2534e6ccafaeSMatthew G Knepley PetscInt faceVerticesQuad[12] = { 2535e6ccafaeSMatthew G Knepley 0, 1, 4, /* bottom */ 2536e6ccafaeSMatthew G Knepley 1, 2, 5, /* right */ 2537e6ccafaeSMatthew G Knepley 2, 3, 6, /* top */ 2538e6ccafaeSMatthew G Knepley 3, 0, 7, /* left */ 2539e6ccafaeSMatthew G Knepley }; 2540e6ccafaeSMatthew G Knepley 2541e6ccafaeSMatthew G Knepley for (i = 0; i < faceSizeQuad; ++i) sortedIndices[i] = indices[i]; 2542*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscSortInt(faceSizeQuad, sortedIndices)); 2543e6ccafaeSMatthew G Knepley for (iFace = 0; iFace < 4; ++iFace) { 2544e6ccafaeSMatthew G Knepley const PetscInt ii = iFace*faceSizeQuad; 2545e6ccafaeSMatthew G Knepley PetscInt fVertex, cVertex; 2546e6ccafaeSMatthew G Knepley 2547e6ccafaeSMatthew G Knepley if ((sortedIndices[0] == faceVerticesQuadSorted[ii+0]) && 2548e6ccafaeSMatthew G Knepley (sortedIndices[1] == faceVerticesQuadSorted[ii+1])) { 2549e6ccafaeSMatthew G Knepley for (fVertex = 0; fVertex < faceSizeQuad; ++fVertex) { 2550e6ccafaeSMatthew G Knepley for (cVertex = 0; cVertex < faceSizeQuad; ++cVertex) { 2551e6ccafaeSMatthew G Knepley if (indices[cVertex] == faceVerticesQuad[ii+fVertex]) { 2552e6ccafaeSMatthew G Knepley faceVertices[fVertex] = origVertices[cVertex]; 2553e6ccafaeSMatthew G Knepley break; 2554e6ccafaeSMatthew G Knepley } 2555e6ccafaeSMatthew G Knepley } 2556e6ccafaeSMatthew G Knepley } 2557e6ccafaeSMatthew G Knepley found = PETSC_TRUE; 2558e6ccafaeSMatthew G Knepley break; 2559e6ccafaeSMatthew G Knepley } 2560e6ccafaeSMatthew G Knepley } 25612c71b3e2SJacob Faibussowitsch PetscCheckFalse(!found,comm, PETSC_ERR_ARG_WRONG, "Invalid quad crossface"); 2562e6ccafaeSMatthew G Knepley if (posOriented) *posOriented = PETSC_TRUE; 2563e6ccafaeSMatthew G Knepley PetscFunctionReturn(0); 2564e6ccafaeSMatthew G Knepley } else if (cellDim == 3 && numCorners == 8) { 2565e6ccafaeSMatthew G Knepley /* Hexes 2566e6ccafaeSMatthew G Knepley A hex is two oriented quads with the normal of the first 2567e6ccafaeSMatthew G Knepley pointing up at the second. 2568e6ccafaeSMatthew G Knepley 2569e6ccafaeSMatthew G Knepley 7---6 2570e6ccafaeSMatthew G Knepley /| /| 2571e6ccafaeSMatthew G Knepley 4---5 | 2572ddeab2a6SMatthew G. Knepley | 1-|-2 2573e6ccafaeSMatthew G Knepley |/ |/ 2574ddeab2a6SMatthew G. Knepley 0---3 2575e6ccafaeSMatthew G Knepley 2576e6ccafaeSMatthew G Knepley Faces are determined by the first 4 vertices (corners of faces) */ 2577e6ccafaeSMatthew G Knepley const PetscInt faceSizeHex = 4; 2578e6ccafaeSMatthew G Knepley PetscInt sortedIndices[4], i, iFace; 2579e6ccafaeSMatthew G Knepley PetscBool found = PETSC_FALSE; 2580e6ccafaeSMatthew G Knepley PetscInt faceVerticesHexSorted[24] = { 2581e6ccafaeSMatthew G Knepley 0, 1, 2, 3, /* bottom */ 2582e6ccafaeSMatthew G Knepley 4, 5, 6, 7, /* top */ 2583ddeab2a6SMatthew G. Knepley 0, 3, 4, 5, /* front */ 2584ddeab2a6SMatthew G. Knepley 2, 3, 5, 6, /* right */ 2585ddeab2a6SMatthew G. Knepley 1, 2, 6, 7, /* back */ 2586ddeab2a6SMatthew G. Knepley 0, 1, 4, 7, /* left */ 2587e6ccafaeSMatthew G Knepley }; 2588e6ccafaeSMatthew G Knepley PetscInt faceVerticesHex[24] = { 2589ddeab2a6SMatthew G. Knepley 1, 2, 3, 0, /* bottom */ 2590e6ccafaeSMatthew G Knepley 4, 5, 6, 7, /* top */ 2591ddeab2a6SMatthew G. Knepley 0, 3, 5, 4, /* front */ 2592ddeab2a6SMatthew G. Knepley 3, 2, 6, 5, /* right */ 2593ddeab2a6SMatthew G. Knepley 2, 1, 7, 6, /* back */ 2594ddeab2a6SMatthew G. Knepley 1, 0, 4, 7, /* left */ 2595e6ccafaeSMatthew G Knepley }; 2596e6ccafaeSMatthew G Knepley 2597e6ccafaeSMatthew G Knepley for (i = 0; i < faceSizeHex; ++i) sortedIndices[i] = indices[i]; 2598*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscSortInt(faceSizeHex, sortedIndices)); 2599e6ccafaeSMatthew G Knepley for (iFace = 0; iFace < 6; ++iFace) { 2600e6ccafaeSMatthew G Knepley const PetscInt ii = iFace*faceSizeHex; 2601e6ccafaeSMatthew G Knepley PetscInt fVertex, cVertex; 2602e6ccafaeSMatthew G Knepley 2603e6ccafaeSMatthew G Knepley if ((sortedIndices[0] == faceVerticesHexSorted[ii+0]) && 2604e6ccafaeSMatthew G Knepley (sortedIndices[1] == faceVerticesHexSorted[ii+1]) && 2605e6ccafaeSMatthew G Knepley (sortedIndices[2] == faceVerticesHexSorted[ii+2]) && 2606e6ccafaeSMatthew G Knepley (sortedIndices[3] == faceVerticesHexSorted[ii+3])) { 2607e6ccafaeSMatthew G Knepley for (fVertex = 0; fVertex < faceSizeHex; ++fVertex) { 2608e6ccafaeSMatthew G Knepley for (cVertex = 0; cVertex < faceSizeHex; ++cVertex) { 2609e6ccafaeSMatthew G Knepley if (indices[cVertex] == faceVerticesHex[ii+fVertex]) { 2610e6ccafaeSMatthew G Knepley faceVertices[fVertex] = origVertices[cVertex]; 2611e6ccafaeSMatthew G Knepley break; 2612e6ccafaeSMatthew G Knepley } 2613e6ccafaeSMatthew G Knepley } 2614e6ccafaeSMatthew G Knepley } 2615e6ccafaeSMatthew G Knepley found = PETSC_TRUE; 2616e6ccafaeSMatthew G Knepley break; 2617e6ccafaeSMatthew G Knepley } 2618e6ccafaeSMatthew G Knepley } 26192c71b3e2SJacob Faibussowitsch PetscCheckFalse(!found,comm, PETSC_ERR_ARG_WRONG, "Invalid hex crossface"); 2620e6ccafaeSMatthew G Knepley if (posOriented) *posOriented = PETSC_TRUE; 2621e6ccafaeSMatthew G Knepley PetscFunctionReturn(0); 2622e6ccafaeSMatthew G Knepley } else if (cellDim == 3 && numCorners == 10) { 2623e6ccafaeSMatthew G Knepley /* Quadratic tet */ 2624e6ccafaeSMatthew G Knepley /* Faces are determined by the first 3 vertices (corners of faces) */ 2625e6ccafaeSMatthew G Knepley const PetscInt faceSizeTet = 6; 2626e6ccafaeSMatthew G Knepley PetscInt sortedIndices[6], i, iFace; 2627e6ccafaeSMatthew G Knepley PetscBool found = PETSC_FALSE; 2628e6ccafaeSMatthew G Knepley PetscInt faceVerticesTetSorted[24] = { 2629e6ccafaeSMatthew G Knepley 0, 1, 2, 6, 7, 8, /* bottom */ 2630e6ccafaeSMatthew G Knepley 0, 3, 4, 6, 7, 9, /* front */ 2631e6ccafaeSMatthew G Knepley 1, 4, 5, 7, 8, 9, /* right */ 2632e6ccafaeSMatthew G Knepley 2, 3, 5, 6, 8, 9, /* left */ 2633e6ccafaeSMatthew G Knepley }; 2634e6ccafaeSMatthew G Knepley PetscInt faceVerticesTet[24] = { 2635e6ccafaeSMatthew G Knepley 0, 1, 2, 6, 7, 8, /* bottom */ 2636e6ccafaeSMatthew G Knepley 0, 4, 3, 6, 7, 9, /* front */ 2637e6ccafaeSMatthew G Knepley 1, 5, 4, 7, 8, 9, /* right */ 2638e6ccafaeSMatthew G Knepley 2, 3, 5, 8, 6, 9, /* left */ 2639e6ccafaeSMatthew G Knepley }; 2640e6ccafaeSMatthew G Knepley 2641e6ccafaeSMatthew G Knepley for (i = 0; i < faceSizeTet; ++i) sortedIndices[i] = indices[i]; 2642*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscSortInt(faceSizeTet, sortedIndices)); 2643e6ccafaeSMatthew G Knepley for (iFace=0; iFace < 4; ++iFace) { 2644e6ccafaeSMatthew G Knepley const PetscInt ii = iFace*faceSizeTet; 2645e6ccafaeSMatthew G Knepley PetscInt fVertex, cVertex; 2646e6ccafaeSMatthew G Knepley 2647e6ccafaeSMatthew G Knepley if ((sortedIndices[0] == faceVerticesTetSorted[ii+0]) && 2648e6ccafaeSMatthew G Knepley (sortedIndices[1] == faceVerticesTetSorted[ii+1]) && 2649e6ccafaeSMatthew G Knepley (sortedIndices[2] == faceVerticesTetSorted[ii+2]) && 2650e6ccafaeSMatthew G Knepley (sortedIndices[3] == faceVerticesTetSorted[ii+3])) { 2651e6ccafaeSMatthew G Knepley for (fVertex = 0; fVertex < faceSizeTet; ++fVertex) { 2652e6ccafaeSMatthew G Knepley for (cVertex = 0; cVertex < faceSizeTet; ++cVertex) { 2653e6ccafaeSMatthew G Knepley if (indices[cVertex] == faceVerticesTet[ii+fVertex]) { 2654e6ccafaeSMatthew G Knepley faceVertices[fVertex] = origVertices[cVertex]; 2655e6ccafaeSMatthew G Knepley break; 2656e6ccafaeSMatthew G Knepley } 2657e6ccafaeSMatthew G Knepley } 2658e6ccafaeSMatthew G Knepley } 2659e6ccafaeSMatthew G Knepley found = PETSC_TRUE; 2660e6ccafaeSMatthew G Knepley break; 2661e6ccafaeSMatthew G Knepley } 2662e6ccafaeSMatthew G Knepley } 26632c71b3e2SJacob Faibussowitsch PetscCheckFalse(!found,comm, PETSC_ERR_ARG_WRONG, "Invalid tet crossface"); 2664e6ccafaeSMatthew G Knepley if (posOriented) *posOriented = PETSC_TRUE; 2665e6ccafaeSMatthew G Knepley PetscFunctionReturn(0); 2666e6ccafaeSMatthew G Knepley } else if (cellDim == 3 && numCorners == 27) { 2667e6ccafaeSMatthew G Knepley /* Quadratic hexes (I hate this) 2668e6ccafaeSMatthew G Knepley A hex is two oriented quads with the normal of the first 2669e6ccafaeSMatthew G Knepley pointing up at the second. 2670e6ccafaeSMatthew G Knepley 2671e6ccafaeSMatthew G Knepley 7---6 2672e6ccafaeSMatthew G Knepley /| /| 2673e6ccafaeSMatthew G Knepley 4---5 | 2674e6ccafaeSMatthew G Knepley | 3-|-2 2675e6ccafaeSMatthew G Knepley |/ |/ 2676e6ccafaeSMatthew G Knepley 0---1 2677e6ccafaeSMatthew G Knepley 2678e6ccafaeSMatthew G Knepley Faces are determined by the first 4 vertices (corners of faces) */ 2679e6ccafaeSMatthew G Knepley const PetscInt faceSizeQuadHex = 9; 2680e6ccafaeSMatthew G Knepley PetscInt sortedIndices[9], i, iFace; 2681e6ccafaeSMatthew G Knepley PetscBool found = PETSC_FALSE; 2682e6ccafaeSMatthew G Knepley PetscInt faceVerticesQuadHexSorted[54] = { 2683e6ccafaeSMatthew G Knepley 0, 1, 2, 3, 8, 9, 10, 11, 24, /* bottom */ 2684e6ccafaeSMatthew G Knepley 4, 5, 6, 7, 12, 13, 14, 15, 25, /* top */ 2685e6ccafaeSMatthew G Knepley 0, 1, 4, 5, 8, 12, 16, 17, 22, /* front */ 2686e6ccafaeSMatthew G Knepley 1, 2, 5, 6, 9, 13, 17, 18, 21, /* right */ 2687e6ccafaeSMatthew G Knepley 2, 3, 6, 7, 10, 14, 18, 19, 23, /* back */ 2688e6ccafaeSMatthew G Knepley 0, 3, 4, 7, 11, 15, 16, 19, 20, /* left */ 2689e6ccafaeSMatthew G Knepley }; 2690e6ccafaeSMatthew G Knepley PetscInt faceVerticesQuadHex[54] = { 2691e6ccafaeSMatthew G Knepley 3, 2, 1, 0, 10, 9, 8, 11, 24, /* bottom */ 2692e6ccafaeSMatthew G Knepley 4, 5, 6, 7, 12, 13, 14, 15, 25, /* top */ 2693e6ccafaeSMatthew G Knepley 0, 1, 5, 4, 8, 17, 12, 16, 22, /* front */ 2694e6ccafaeSMatthew G Knepley 1, 2, 6, 5, 9, 18, 13, 17, 21, /* right */ 2695e6ccafaeSMatthew G Knepley 2, 3, 7, 6, 10, 19, 14, 18, 23, /* back */ 2696e6ccafaeSMatthew G Knepley 3, 0, 4, 7, 11, 16, 15, 19, 20 /* left */ 2697e6ccafaeSMatthew G Knepley }; 2698e6ccafaeSMatthew G Knepley 2699e6ccafaeSMatthew G Knepley for (i = 0; i < faceSizeQuadHex; ++i) sortedIndices[i] = indices[i]; 2700*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscSortInt(faceSizeQuadHex, sortedIndices)); 2701e6ccafaeSMatthew G Knepley for (iFace = 0; iFace < 6; ++iFace) { 2702e6ccafaeSMatthew G Knepley const PetscInt ii = iFace*faceSizeQuadHex; 2703e6ccafaeSMatthew G Knepley PetscInt fVertex, cVertex; 2704e6ccafaeSMatthew G Knepley 2705e6ccafaeSMatthew G Knepley if ((sortedIndices[0] == faceVerticesQuadHexSorted[ii+0]) && 2706e6ccafaeSMatthew G Knepley (sortedIndices[1] == faceVerticesQuadHexSorted[ii+1]) && 2707e6ccafaeSMatthew G Knepley (sortedIndices[2] == faceVerticesQuadHexSorted[ii+2]) && 2708e6ccafaeSMatthew G Knepley (sortedIndices[3] == faceVerticesQuadHexSorted[ii+3])) { 2709e6ccafaeSMatthew G Knepley for (fVertex = 0; fVertex < faceSizeQuadHex; ++fVertex) { 2710e6ccafaeSMatthew G Knepley for (cVertex = 0; cVertex < faceSizeQuadHex; ++cVertex) { 2711e6ccafaeSMatthew G Knepley if (indices[cVertex] == faceVerticesQuadHex[ii+fVertex]) { 2712e6ccafaeSMatthew G Knepley faceVertices[fVertex] = origVertices[cVertex]; 2713e6ccafaeSMatthew G Knepley break; 2714e6ccafaeSMatthew G Knepley } 2715e6ccafaeSMatthew G Knepley } 2716e6ccafaeSMatthew G Knepley } 2717e6ccafaeSMatthew G Knepley found = PETSC_TRUE; 2718e6ccafaeSMatthew G Knepley break; 2719e6ccafaeSMatthew G Knepley } 2720e6ccafaeSMatthew G Knepley } 27212c71b3e2SJacob Faibussowitsch PetscCheckFalse(!found,comm, PETSC_ERR_ARG_WRONG, "Invalid hex crossface"); 2722e6ccafaeSMatthew G Knepley if (posOriented) *posOriented = PETSC_TRUE; 2723e6ccafaeSMatthew G Knepley PetscFunctionReturn(0); 2724e6ccafaeSMatthew G Knepley } else SETERRQ(comm, PETSC_ERR_ARG_WRONG, "Unknown cell type for faceOrientation()."); 2725e6ccafaeSMatthew G Knepley if (!posOrient) { 2726*5f80ce2aSJacob Faibussowitsch if (debug) CHKERRQ(PetscPrintf(comm, " Reversing initial face orientation\n")); 2727e6ccafaeSMatthew G Knepley for (f = 0; f < faceSize; ++f) faceVertices[f] = origVertices[faceSize-1 - f]; 2728e6ccafaeSMatthew G Knepley } else { 2729*5f80ce2aSJacob Faibussowitsch if (debug) CHKERRQ(PetscPrintf(comm, " Keeping initial face orientation\n")); 2730e6ccafaeSMatthew G Knepley for (f = 0; f < faceSize; ++f) faceVertices[f] = origVertices[f]; 2731e6ccafaeSMatthew G Knepley } 2732e6ccafaeSMatthew G Knepley if (posOriented) *posOriented = posOrient; 2733e6ccafaeSMatthew G Knepley PetscFunctionReturn(0); 2734e6ccafaeSMatthew G Knepley } 2735e6ccafaeSMatthew G Knepley 2736c08575a3SMatthew G. Knepley /*@ 2737c08575a3SMatthew G. Knepley DMPlexGetOrientedFace - Given a cell and a face, as a set of vertices, return the oriented face, as a set of vertices, 2738c08575a3SMatthew G. Knepley in faceVertices. The orientation is such that the face normal points out of the cell 2739c08575a3SMatthew G. Knepley 2740c08575a3SMatthew G. Knepley Not collective 2741c08575a3SMatthew G. Knepley 2742c08575a3SMatthew G. Knepley Input Parameters: 2743c08575a3SMatthew G. Knepley + dm - The original mesh 2744c08575a3SMatthew G. Knepley . cell - The cell mesh point 2745c08575a3SMatthew G. Knepley . faceSize - The number of vertices on the face 2746c08575a3SMatthew G. Knepley . face - The face vertices 2747c08575a3SMatthew G. Knepley . numCorners - The number of vertices on the cell 2748c08575a3SMatthew G. Knepley . indices - Local numbering of face vertices in cell cone 2749c08575a3SMatthew G. Knepley - origVertices - Original face vertices 2750c08575a3SMatthew G. Knepley 2751d8d19677SJose E. Roman Output Parameters: 2752c08575a3SMatthew G. Knepley + faceVertices - The face vertices properly oriented 2753c08575a3SMatthew G. Knepley - posOriented - PETSC_TRUE if the face was oriented with outward normal 2754c08575a3SMatthew G. Knepley 2755c08575a3SMatthew G. Knepley Level: developer 2756c08575a3SMatthew G. Knepley 2757c08575a3SMatthew G. Knepley .seealso: DMPlexGetCone() 2758c08575a3SMatthew G. Knepley @*/ 2759e6ccafaeSMatthew G Knepley PetscErrorCode DMPlexGetOrientedFace(DM dm, PetscInt cell, PetscInt faceSize, const PetscInt face[], PetscInt numCorners, PetscInt indices[], PetscInt origVertices[], PetscInt faceVertices[], PetscBool *posOriented) 2760e6ccafaeSMatthew G Knepley { 27610298fd71SBarry Smith const PetscInt *cone = NULL; 2762e6ccafaeSMatthew G Knepley PetscInt coneSize, v, f, v2; 2763e6ccafaeSMatthew G Knepley PetscInt oppositeVertex = -1; 2764e6ccafaeSMatthew G Knepley 2765e6ccafaeSMatthew G Knepley PetscFunctionBegin; 2766*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexGetConeSize(dm, cell, &coneSize)); 2767*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexGetCone(dm, cell, &cone)); 2768e6ccafaeSMatthew G Knepley for (v = 0, v2 = 0; v < coneSize; ++v) { 2769e6ccafaeSMatthew G Knepley PetscBool found = PETSC_FALSE; 2770e6ccafaeSMatthew G Knepley 2771e6ccafaeSMatthew G Knepley for (f = 0; f < faceSize; ++f) { 2772e6ccafaeSMatthew G Knepley if (face[f] == cone[v]) { 2773e6ccafaeSMatthew G Knepley found = PETSC_TRUE; break; 2774e6ccafaeSMatthew G Knepley } 2775e6ccafaeSMatthew G Knepley } 2776e6ccafaeSMatthew G Knepley if (found) { 2777e6ccafaeSMatthew G Knepley indices[v2] = v; 2778e6ccafaeSMatthew G Knepley origVertices[v2] = cone[v]; 2779e6ccafaeSMatthew G Knepley ++v2; 2780e6ccafaeSMatthew G Knepley } else { 2781e6ccafaeSMatthew G Knepley oppositeVertex = v; 2782e6ccafaeSMatthew G Knepley } 2783e6ccafaeSMatthew G Knepley } 2784*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexGetFaceOrientation(dm, cell, numCorners, indices, oppositeVertex, origVertices, faceVertices, posOriented)); 2785e6ccafaeSMatthew G Knepley PetscFunctionReturn(0); 2786e6ccafaeSMatthew G Knepley } 2787e6ccafaeSMatthew G Knepley 2788e6ccafaeSMatthew G Knepley /* 2789cd0c2139SMatthew G Knepley DMPlexInsertFace_Internal - Puts a face into the mesh 2790e6ccafaeSMatthew G Knepley 2791e6ccafaeSMatthew G Knepley Not collective 2792e6ccafaeSMatthew G Knepley 2793e6ccafaeSMatthew G Knepley Input Parameters: 2794e6ccafaeSMatthew G Knepley + dm - The DMPlex 2795e6ccafaeSMatthew G Knepley . numFaceVertex - The number of vertices in the face 2796e6ccafaeSMatthew G Knepley . faceVertices - The vertices in the face for dm 2797e6ccafaeSMatthew G Knepley . subfaceVertices - The vertices in the face for subdm 2798e6ccafaeSMatthew G Knepley . numCorners - The number of vertices in the cell 2799e6ccafaeSMatthew G Knepley . cell - A cell in dm containing the face 2800e6ccafaeSMatthew G Knepley . subcell - A cell in subdm containing the face 2801e6ccafaeSMatthew G Knepley . firstFace - First face in the mesh 2802e6ccafaeSMatthew G Knepley - newFacePoint - Next face in the mesh 2803e6ccafaeSMatthew G Knepley 2804e6ccafaeSMatthew G Knepley Output Parameters: 2805e6ccafaeSMatthew G Knepley . newFacePoint - Contains next face point number on input, updated on output 2806e6ccafaeSMatthew G Knepley 2807e6ccafaeSMatthew G Knepley Level: developer 2808e6ccafaeSMatthew G Knepley */ 2809cd0c2139SMatthew G Knepley static PetscErrorCode DMPlexInsertFace_Internal(DM dm, DM subdm, PetscInt numFaceVertices, const PetscInt faceVertices[], const PetscInt subfaceVertices[], PetscInt numCorners, PetscInt cell, PetscInt subcell, PetscInt firstFace, PetscInt *newFacePoint) 2810e6ccafaeSMatthew G Knepley { 281182f516ccSBarry Smith MPI_Comm comm; 2812e6ccafaeSMatthew G Knepley DM_Plex *submesh = (DM_Plex*) subdm->data; 2813e6ccafaeSMatthew G Knepley const PetscInt *faces; 2814e6ccafaeSMatthew G Knepley PetscInt numFaces, coneSize; 2815e6ccafaeSMatthew G Knepley 2816e6ccafaeSMatthew G Knepley PetscFunctionBegin; 2817*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscObjectGetComm((PetscObject)dm,&comm)); 2818*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexGetConeSize(subdm, subcell, &coneSize)); 28192c71b3e2SJacob Faibussowitsch PetscCheckFalse(coneSize != 1,comm, PETSC_ERR_ARG_OUTOFRANGE, "Cone size of cell %d is %d != 1", cell, coneSize); 2820e6ccafaeSMatthew G Knepley #if 0 2821e6ccafaeSMatthew G Knepley /* Cannot use this because support() has not been constructed yet */ 2822*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexGetJoin(subdm, numFaceVertices, subfaceVertices, &numFaces, &faces)); 2823e6ccafaeSMatthew G Knepley #else 2824e6ccafaeSMatthew G Knepley { 2825e6ccafaeSMatthew G Knepley PetscInt f; 2826e6ccafaeSMatthew G Knepley 2827e6ccafaeSMatthew G Knepley numFaces = 0; 2828*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMGetWorkArray(subdm, 1, MPIU_INT, (void **) &faces)); 2829e6ccafaeSMatthew G Knepley for (f = firstFace; f < *newFacePoint; ++f) { 2830e6ccafaeSMatthew G Knepley PetscInt dof, off, d; 2831e6ccafaeSMatthew G Knepley 2832*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscSectionGetDof(submesh->coneSection, f, &dof)); 2833*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscSectionGetOffset(submesh->coneSection, f, &off)); 2834e6ccafaeSMatthew G Knepley /* Yes, I know this is quadratic, but I expect the sizes to be <5 */ 2835e6ccafaeSMatthew G Knepley for (d = 0; d < dof; ++d) { 2836e6ccafaeSMatthew G Knepley const PetscInt p = submesh->cones[off+d]; 2837e6ccafaeSMatthew G Knepley PetscInt v; 2838e6ccafaeSMatthew G Knepley 2839e6ccafaeSMatthew G Knepley for (v = 0; v < numFaceVertices; ++v) { 2840e6ccafaeSMatthew G Knepley if (subfaceVertices[v] == p) break; 2841e6ccafaeSMatthew G Knepley } 2842e6ccafaeSMatthew G Knepley if (v == numFaceVertices) break; 2843e6ccafaeSMatthew G Knepley } 2844e6ccafaeSMatthew G Knepley if (d == dof) { 2845e6ccafaeSMatthew G Knepley numFaces = 1; 2846e6ccafaeSMatthew G Knepley ((PetscInt*) faces)[0] = f; 2847e6ccafaeSMatthew G Knepley } 2848e6ccafaeSMatthew G Knepley } 2849e6ccafaeSMatthew G Knepley } 2850e6ccafaeSMatthew G Knepley #endif 28512c71b3e2SJacob Faibussowitsch PetscCheckFalse(numFaces > 1,comm, PETSC_ERR_ARG_WRONG, "Vertex set had %d faces, not one", numFaces); 2852e6ccafaeSMatthew G Knepley else if (numFaces == 1) { 2853e6ccafaeSMatthew G Knepley /* Add the other cell neighbor for this face */ 2854*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexSetCone(subdm, subcell, faces)); 2855e6ccafaeSMatthew G Knepley } else { 2856e6ccafaeSMatthew G Knepley PetscInt *indices, *origVertices, *orientedVertices, *orientedSubVertices, v, ov; 2857e6ccafaeSMatthew G Knepley PetscBool posOriented; 2858e6ccafaeSMatthew G Knepley 2859*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMGetWorkArray(subdm, 4*numFaceVertices * sizeof(PetscInt), MPIU_INT, &orientedVertices)); 2860e6ccafaeSMatthew G Knepley origVertices = &orientedVertices[numFaceVertices]; 2861e6ccafaeSMatthew G Knepley indices = &orientedVertices[numFaceVertices*2]; 2862e6ccafaeSMatthew G Knepley orientedSubVertices = &orientedVertices[numFaceVertices*3]; 2863*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexGetOrientedFace(dm, cell, numFaceVertices, faceVertices, numCorners, indices, origVertices, orientedVertices, &posOriented)); 2864e6ccafaeSMatthew G Knepley /* TODO: I know that routine should return a permutation, not the indices */ 2865e6ccafaeSMatthew G Knepley for (v = 0; v < numFaceVertices; ++v) { 2866e6ccafaeSMatthew G Knepley const PetscInt vertex = faceVertices[v], subvertex = subfaceVertices[v]; 2867e6ccafaeSMatthew G Knepley for (ov = 0; ov < numFaceVertices; ++ov) { 2868e6ccafaeSMatthew G Knepley if (orientedVertices[ov] == vertex) { 2869e6ccafaeSMatthew G Knepley orientedSubVertices[ov] = subvertex; 2870e6ccafaeSMatthew G Knepley break; 2871e6ccafaeSMatthew G Knepley } 2872e6ccafaeSMatthew G Knepley } 28732c71b3e2SJacob Faibussowitsch PetscCheckFalse(ov == numFaceVertices,comm, PETSC_ERR_PLIB, "Could not find face vertex %d in orientated set", vertex); 2874e6ccafaeSMatthew G Knepley } 2875*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexSetCone(subdm, *newFacePoint, orientedSubVertices)); 2876*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexSetCone(subdm, subcell, newFacePoint)); 2877*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMRestoreWorkArray(subdm, 4*numFaceVertices * sizeof(PetscInt), MPIU_INT, &orientedVertices)); 2878e6ccafaeSMatthew G Knepley ++(*newFacePoint); 2879e6ccafaeSMatthew G Knepley } 2880ef07cca7SMatthew G. Knepley #if 0 2881*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexRestoreJoin(subdm, numFaceVertices, subfaceVertices, &numFaces, &faces)); 2882ef07cca7SMatthew G. Knepley #else 2883*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMRestoreWorkArray(subdm, 1, MPIU_INT, (void **) &faces)); 2884ef07cca7SMatthew G. Knepley #endif 2885e6ccafaeSMatthew G Knepley PetscFunctionReturn(0); 2886e6ccafaeSMatthew G Knepley } 2887e6ccafaeSMatthew G Knepley 288853156dfcSMatthew G. Knepley static PetscErrorCode DMPlexCreateSubmesh_Uninterpolated(DM dm, DMLabel vertexLabel, PetscInt value, DM subdm) 2889e6ccafaeSMatthew G Knepley { 289082f516ccSBarry Smith MPI_Comm comm; 289153156dfcSMatthew G. Knepley DMLabel subpointMap; 2892efa14ee0SMatthew G Knepley IS subvertexIS, subcellIS; 2893efa14ee0SMatthew G Knepley const PetscInt *subVertices, *subCells; 2894efa14ee0SMatthew G Knepley PetscInt numSubVertices, firstSubVertex, numSubCells; 2895fed694aaSMatthew G. Knepley PetscInt *subface, maxConeSize, numSubFaces = 0, firstSubFace, newFacePoint, nFV = 0; 2896efa14ee0SMatthew G Knepley PetscInt vStart, vEnd, c, f; 2897e6ccafaeSMatthew G Knepley 2898e6ccafaeSMatthew G Knepley PetscFunctionBegin; 2899*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscObjectGetComm((PetscObject)dm,&comm)); 2900efa14ee0SMatthew G Knepley /* Create subpointMap which marks the submesh */ 2901*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMLabelCreate(PETSC_COMM_SELF, "subpoint_map", &subpointMap)); 2902*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexSetSubpointMap(subdm, subpointMap)); 2903*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMLabelDestroy(&subpointMap)); 2904*5f80ce2aSJacob Faibussowitsch if (vertexLabel) CHKERRQ(DMPlexMarkSubmesh_Uninterpolated(dm, vertexLabel, value, subpointMap, &numSubFaces, &nFV, subdm)); 2905efa14ee0SMatthew G Knepley /* Setup chart */ 2906*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMLabelGetStratumSize(subpointMap, 0, &numSubVertices)); 2907*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMLabelGetStratumSize(subpointMap, 2, &numSubCells)); 2908*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexSetChart(subdm, 0, numSubCells+numSubFaces+numSubVertices)); 2909*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexSetVTKCellHeight(subdm, 1)); 2910e6ccafaeSMatthew G Knepley /* Set cone sizes */ 2911e6ccafaeSMatthew G Knepley firstSubVertex = numSubCells; 2912efa14ee0SMatthew G Knepley firstSubFace = numSubCells+numSubVertices; 2913e6ccafaeSMatthew G Knepley newFacePoint = firstSubFace; 2914*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMLabelGetStratumIS(subpointMap, 0, &subvertexIS)); 2915*5f80ce2aSJacob Faibussowitsch if (subvertexIS) CHKERRQ(ISGetIndices(subvertexIS, &subVertices)); 2916*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMLabelGetStratumIS(subpointMap, 2, &subcellIS)); 2917*5f80ce2aSJacob Faibussowitsch if (subcellIS) CHKERRQ(ISGetIndices(subcellIS, &subCells)); 2918e6ccafaeSMatthew G Knepley for (c = 0; c < numSubCells; ++c) { 2919*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexSetConeSize(subdm, c, 1)); 2920e6ccafaeSMatthew G Knepley } 2921e6ccafaeSMatthew G Knepley for (f = firstSubFace; f < firstSubFace+numSubFaces; ++f) { 2922*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexSetConeSize(subdm, f, nFV)); 2923e6ccafaeSMatthew G Knepley } 2924*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMSetUp(subdm)); 2925e6ccafaeSMatthew G Knepley /* Create face cones */ 2926*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexGetDepthStratum(dm, 0, &vStart, &vEnd)); 2927*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexGetMaxSizes(dm, &maxConeSize, NULL)); 2928*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMGetWorkArray(subdm, maxConeSize, MPIU_INT, (void**) &subface)); 2929e6ccafaeSMatthew G Knepley for (c = 0; c < numSubCells; ++c) { 2930e6ccafaeSMatthew G Knepley const PetscInt cell = subCells[c]; 2931efa14ee0SMatthew G Knepley const PetscInt subcell = c; 29320298fd71SBarry Smith PetscInt *closure = NULL; 2933efa14ee0SMatthew G Knepley PetscInt closureSize, cl, numCorners = 0, faceSize = 0; 2934e6ccafaeSMatthew G Knepley 2935*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexGetTransitiveClosure(dm, cell, PETSC_TRUE, &closureSize, &closure)); 2936efa14ee0SMatthew G Knepley for (cl = 0; cl < closureSize*2; cl += 2) { 2937efa14ee0SMatthew G Knepley const PetscInt point = closure[cl]; 2938e6ccafaeSMatthew G Knepley PetscInt subVertex; 2939e6ccafaeSMatthew G Knepley 2940efa14ee0SMatthew G Knepley if ((point >= vStart) && (point < vEnd)) { 2941efa14ee0SMatthew G Knepley ++numCorners; 2942*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscFindInt(point, numSubVertices, subVertices, &subVertex)); 2943efa14ee0SMatthew G Knepley if (subVertex >= 0) { 2944efa14ee0SMatthew G Knepley closure[faceSize] = point; 294565560c7fSMatthew G Knepley subface[faceSize] = firstSubVertex+subVertex; 2946e6ccafaeSMatthew G Knepley ++faceSize; 2947e6ccafaeSMatthew G Knepley } 2948e6ccafaeSMatthew G Knepley } 2949e6ccafaeSMatthew G Knepley } 29502c71b3e2SJacob Faibussowitsch PetscCheckFalse(faceSize > nFV,comm, PETSC_ERR_ARG_WRONG, "Invalid submesh: Too many vertices %d of an element on the surface", faceSize); 2951efa14ee0SMatthew G Knepley if (faceSize == nFV) { 2952*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexInsertFace_Internal(dm, subdm, faceSize, closure, subface, numCorners, cell, subcell, firstSubFace, &newFacePoint)); 2953e6ccafaeSMatthew G Knepley } 2954*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexRestoreTransitiveClosure(dm, cell, PETSC_TRUE, &closureSize, &closure)); 2955e6ccafaeSMatthew G Knepley } 2956*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMRestoreWorkArray(subdm, maxConeSize, MPIU_INT, (void**) &subface)); 2957*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexSymmetrize(subdm)); 2958*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexStratify(subdm)); 2959e6ccafaeSMatthew G Knepley /* Build coordinates */ 2960efa14ee0SMatthew G Knepley { 2961efa14ee0SMatthew G Knepley PetscSection coordSection, subCoordSection; 2962efa14ee0SMatthew G Knepley Vec coordinates, subCoordinates; 2963efa14ee0SMatthew G Knepley PetscScalar *coords, *subCoords; 2964285d324eSMatthew G. Knepley PetscInt numComp, coordSize, v; 296524640c55SToby Isaac const char *name; 2966efa14ee0SMatthew G Knepley 2967*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMGetCoordinateSection(dm, &coordSection)); 2968*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMGetCoordinatesLocal(dm, &coordinates)); 2969*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMGetCoordinateSection(subdm, &subCoordSection)); 2970*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscSectionSetNumFields(subCoordSection, 1)); 2971*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscSectionGetFieldComponents(coordSection, 0, &numComp)); 2972*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscSectionSetFieldComponents(subCoordSection, 0, numComp)); 2973*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscSectionSetChart(subCoordSection, firstSubVertex, firstSubVertex+numSubVertices)); 2974efa14ee0SMatthew G Knepley for (v = 0; v < numSubVertices; ++v) { 2975efa14ee0SMatthew G Knepley const PetscInt vertex = subVertices[v]; 2976efa14ee0SMatthew G Knepley const PetscInt subvertex = firstSubVertex+v; 2977efa14ee0SMatthew G Knepley PetscInt dof; 2978efa14ee0SMatthew G Knepley 2979*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscSectionGetDof(coordSection, vertex, &dof)); 2980*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscSectionSetDof(subCoordSection, subvertex, dof)); 2981*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscSectionSetFieldDof(subCoordSection, subvertex, 0, dof)); 2982e6ccafaeSMatthew G Knepley } 2983*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscSectionSetUp(subCoordSection)); 2984*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscSectionGetStorageSize(subCoordSection, &coordSize)); 2985*5f80ce2aSJacob Faibussowitsch CHKERRQ(VecCreate(PETSC_COMM_SELF, &subCoordinates)); 2986*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscObjectGetName((PetscObject)coordinates,&name)); 2987*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscObjectSetName((PetscObject)subCoordinates,name)); 2988*5f80ce2aSJacob Faibussowitsch CHKERRQ(VecSetSizes(subCoordinates, coordSize, PETSC_DETERMINE)); 2989*5f80ce2aSJacob Faibussowitsch CHKERRQ(VecSetType(subCoordinates,VECSTANDARD)); 2990830e53efSMatthew G. Knepley if (coordSize) { 2991*5f80ce2aSJacob Faibussowitsch CHKERRQ(VecGetArray(coordinates, &coords)); 2992*5f80ce2aSJacob Faibussowitsch CHKERRQ(VecGetArray(subCoordinates, &subCoords)); 2993efa14ee0SMatthew G Knepley for (v = 0; v < numSubVertices; ++v) { 2994efa14ee0SMatthew G Knepley const PetscInt vertex = subVertices[v]; 2995efa14ee0SMatthew G Knepley const PetscInt subvertex = firstSubVertex+v; 2996efa14ee0SMatthew G Knepley PetscInt dof, off, sdof, soff, d; 2997e6ccafaeSMatthew G Knepley 2998*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscSectionGetDof(coordSection, vertex, &dof)); 2999*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscSectionGetOffset(coordSection, vertex, &off)); 3000*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscSectionGetDof(subCoordSection, subvertex, &sdof)); 3001*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscSectionGetOffset(subCoordSection, subvertex, &soff)); 30022c71b3e2SJacob Faibussowitsch PetscCheckFalse(dof != sdof,comm, PETSC_ERR_PLIB, "Coordinate dimension %d on subvertex %d, vertex %d should be %d", sdof, subvertex, vertex, dof); 3003e6ccafaeSMatthew G Knepley for (d = 0; d < dof; ++d) subCoords[soff+d] = coords[off+d]; 3004e6ccafaeSMatthew G Knepley } 3005*5f80ce2aSJacob Faibussowitsch CHKERRQ(VecRestoreArray(coordinates, &coords)); 3006*5f80ce2aSJacob Faibussowitsch CHKERRQ(VecRestoreArray(subCoordinates, &subCoords)); 30073b399e24SMatthew G. Knepley } 3008*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMSetCoordinatesLocal(subdm, subCoordinates)); 3009*5f80ce2aSJacob Faibussowitsch CHKERRQ(VecDestroy(&subCoordinates)); 3010e6ccafaeSMatthew G Knepley } 3011efa14ee0SMatthew G Knepley /* Cleanup */ 3012*5f80ce2aSJacob Faibussowitsch if (subvertexIS) CHKERRQ(ISRestoreIndices(subvertexIS, &subVertices)); 3013*5f80ce2aSJacob Faibussowitsch CHKERRQ(ISDestroy(&subvertexIS)); 3014*5f80ce2aSJacob Faibussowitsch if (subcellIS) CHKERRQ(ISRestoreIndices(subcellIS, &subCells)); 3015*5f80ce2aSJacob Faibussowitsch CHKERRQ(ISDestroy(&subcellIS)); 3016e6ccafaeSMatthew G Knepley PetscFunctionReturn(0); 3017e6ccafaeSMatthew G Knepley } 3018e6ccafaeSMatthew G Knepley 30199fbee547SJacob Faibussowitsch static inline PetscInt DMPlexFilterPoint_Internal(PetscInt point, PetscInt firstSubPoint, PetscInt numSubPoints, const PetscInt subPoints[]) 30203982b651SMatthew G. Knepley { 30213982b651SMatthew G. Knepley PetscInt subPoint; 30223982b651SMatthew G. Knepley PetscErrorCode ierr; 30233982b651SMatthew G. Knepley 30243982b651SMatthew G. Knepley ierr = PetscFindInt(point, numSubPoints, subPoints, &subPoint); if (ierr < 0) return ierr; 30253982b651SMatthew G. Knepley return subPoint < 0 ? subPoint : firstSubPoint+subPoint; 30263982b651SMatthew G. Knepley } 30273982b651SMatthew G. Knepley 3028212103e5SMatthew Knepley static PetscErrorCode DMPlexFilterLabels_Internal(DM dm, const PetscInt numSubPoints[], const PetscInt *subpoints[], const PetscInt firstSubPoint[], DM subdm) 3029212103e5SMatthew Knepley { 3030212103e5SMatthew Knepley PetscInt Nl, l, d; 3031212103e5SMatthew Knepley 3032212103e5SMatthew Knepley PetscFunctionBegin; 3033*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMGetNumLabels(dm, &Nl)); 3034212103e5SMatthew Knepley for (l = 0; l < Nl; ++l) { 3035212103e5SMatthew Knepley DMLabel label, newlabel; 3036212103e5SMatthew Knepley const char *lname; 3037d56405f8SMatthew G. Knepley PetscBool isDepth, isDim, isCelltype, isVTK; 3038212103e5SMatthew Knepley IS valueIS; 3039212103e5SMatthew Knepley const PetscInt *values; 3040212103e5SMatthew Knepley PetscInt Nv, v; 3041212103e5SMatthew Knepley 3042*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMGetLabelName(dm, l, &lname)); 3043*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscStrcmp(lname, "depth", &isDepth)); 3044*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscStrcmp(lname, "dim", &isDim)); 3045*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscStrcmp(lname, "celltype", &isCelltype)); 3046*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscStrcmp(lname, "vtk", &isVTK)); 3047d56405f8SMatthew G. Knepley if (isDepth || isDim || isCelltype || isVTK) continue; 3048*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMCreateLabel(subdm, lname)); 3049*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMGetLabel(dm, lname, &label)); 3050*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMGetLabel(subdm, lname, &newlabel)); 3051*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMLabelGetDefaultValue(label, &v)); 3052*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMLabelSetDefaultValue(newlabel, v)); 3053*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMLabelGetValueIS(label, &valueIS)); 3054*5f80ce2aSJacob Faibussowitsch CHKERRQ(ISGetLocalSize(valueIS, &Nv)); 3055*5f80ce2aSJacob Faibussowitsch CHKERRQ(ISGetIndices(valueIS, &values)); 3056212103e5SMatthew Knepley for (v = 0; v < Nv; ++v) { 3057212103e5SMatthew Knepley IS pointIS; 3058212103e5SMatthew Knepley const PetscInt *points; 3059212103e5SMatthew Knepley PetscInt Np, p; 3060212103e5SMatthew Knepley 3061*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMLabelGetStratumIS(label, values[v], &pointIS)); 3062*5f80ce2aSJacob Faibussowitsch CHKERRQ(ISGetLocalSize(pointIS, &Np)); 3063*5f80ce2aSJacob Faibussowitsch CHKERRQ(ISGetIndices(pointIS, &points)); 3064212103e5SMatthew Knepley for (p = 0; p < Np; ++p) { 3065212103e5SMatthew Knepley const PetscInt point = points[p]; 3066212103e5SMatthew Knepley PetscInt subp; 3067212103e5SMatthew Knepley 3068*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexGetPointDepth(dm, point, &d)); 3069212103e5SMatthew Knepley subp = DMPlexFilterPoint_Internal(point, firstSubPoint[d], numSubPoints[d], subpoints[d]); 3070*5f80ce2aSJacob Faibussowitsch if (subp >= 0) CHKERRQ(DMLabelSetValue(newlabel, subp, values[v])); 3071212103e5SMatthew Knepley } 3072*5f80ce2aSJacob Faibussowitsch CHKERRQ(ISRestoreIndices(pointIS, &points)); 3073*5f80ce2aSJacob Faibussowitsch CHKERRQ(ISDestroy(&pointIS)); 3074212103e5SMatthew Knepley } 3075*5f80ce2aSJacob Faibussowitsch CHKERRQ(ISRestoreIndices(valueIS, &values)); 3076*5f80ce2aSJacob Faibussowitsch CHKERRQ(ISDestroy(&valueIS)); 3077212103e5SMatthew Knepley } 3078212103e5SMatthew Knepley PetscFunctionReturn(0); 3079212103e5SMatthew Knepley } 3080212103e5SMatthew Knepley 3081158acfadSMatthew G. Knepley static PetscErrorCode DMPlexCreateSubmeshGeneric_Interpolated(DM dm, DMLabel label, PetscInt value, PetscBool markedFaces, PetscBool isCohesive, PetscInt cellHeight, DM subdm) 3082e6ccafaeSMatthew G Knepley { 308382f516ccSBarry Smith MPI_Comm comm; 308453156dfcSMatthew G. Knepley DMLabel subpointMap; 3085efa14ee0SMatthew G Knepley IS *subpointIS; 3086efa14ee0SMatthew G Knepley const PetscInt **subpoints; 30873982b651SMatthew G. Knepley PetscInt *numSubPoints, *firstSubPoint, *coneNew, *orntNew; 3088412e9a14SMatthew G. Knepley PetscInt totSubPoints = 0, maxConeSize, dim, p, d, v; 30890d366550SMatthew G. Knepley PetscMPIInt rank; 3090e6ccafaeSMatthew G Knepley 3091e6ccafaeSMatthew G Knepley PetscFunctionBegin; 3092*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscObjectGetComm((PetscObject)dm,&comm)); 3093*5f80ce2aSJacob Faibussowitsch CHKERRMPI(MPI_Comm_rank(comm, &rank)); 3094efa14ee0SMatthew G Knepley /* Create subpointMap which marks the submesh */ 3095*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMLabelCreate(PETSC_COMM_SELF, "subpoint_map", &subpointMap)); 3096*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexSetSubpointMap(subdm, subpointMap)); 3097bec263e5SMatthew G. Knepley if (cellHeight) { 3098*5f80ce2aSJacob Faibussowitsch if (isCohesive) CHKERRQ(DMPlexMarkCohesiveSubmesh_Interpolated(dm, label, value, subpointMap, subdm)); 3099*5f80ce2aSJacob Faibussowitsch else CHKERRQ(DMPlexMarkSubmesh_Interpolated(dm, label, value, markedFaces, subpointMap, subdm)); 3100bec263e5SMatthew G. Knepley } else { 3101bec263e5SMatthew G. Knepley DMLabel depth; 3102bec263e5SMatthew G. Knepley IS pointIS; 3103bec263e5SMatthew G. Knepley const PetscInt *points; 3104b85c8bf9SMatthew G. Knepley PetscInt numPoints=0; 3105bec263e5SMatthew G. Knepley 3106*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexGetDepthLabel(dm, &depth)); 3107*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMLabelGetStratumIS(label, value, &pointIS)); 3108b85c8bf9SMatthew G. Knepley if (pointIS) { 3109*5f80ce2aSJacob Faibussowitsch CHKERRQ(ISGetIndices(pointIS, &points)); 3110*5f80ce2aSJacob Faibussowitsch CHKERRQ(ISGetLocalSize(pointIS, &numPoints)); 3111b85c8bf9SMatthew G. Knepley } 3112bec263e5SMatthew G. Knepley for (p = 0; p < numPoints; ++p) { 3113bec263e5SMatthew G. Knepley PetscInt *closure = NULL; 3114bec263e5SMatthew G. Knepley PetscInt closureSize, c, pdim; 3115bec263e5SMatthew G. Knepley 3116*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexGetTransitiveClosure(dm, points[p], PETSC_TRUE, &closureSize, &closure)); 3117bec263e5SMatthew G. Knepley for (c = 0; c < closureSize*2; c += 2) { 3118*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMLabelGetValue(depth, closure[c], &pdim)); 3119*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMLabelSetValue(subpointMap, closure[c], pdim)); 3120bec263e5SMatthew G. Knepley } 3121*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexRestoreTransitiveClosure(dm, points[p], PETSC_TRUE, &closureSize, &closure)); 3122bec263e5SMatthew G. Knepley } 3123*5f80ce2aSJacob Faibussowitsch if (pointIS) CHKERRQ(ISRestoreIndices(pointIS, &points)); 3124*5f80ce2aSJacob Faibussowitsch CHKERRQ(ISDestroy(&pointIS)); 3125bec263e5SMatthew G. Knepley } 3126efa14ee0SMatthew G Knepley /* Setup chart */ 3127*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMGetDimension(dm, &dim)); 3128*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscMalloc4(dim+1,&numSubPoints,dim+1,&firstSubPoint,dim+1,&subpointIS,dim+1,&subpoints)); 3129e6ccafaeSMatthew G Knepley for (d = 0; d <= dim; ++d) { 3130*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMLabelGetStratumSize(subpointMap, d, &numSubPoints[d])); 3131e6ccafaeSMatthew G Knepley totSubPoints += numSubPoints[d]; 3132e6ccafaeSMatthew G Knepley } 3133*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexSetChart(subdm, 0, totSubPoints)); 3134*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexSetVTKCellHeight(subdm, cellHeight)); 3135e6ccafaeSMatthew G Knepley /* Set cone sizes */ 3136e6ccafaeSMatthew G Knepley firstSubPoint[dim] = 0; 3137e6ccafaeSMatthew G Knepley firstSubPoint[0] = firstSubPoint[dim] + numSubPoints[dim]; 3138e6ccafaeSMatthew G Knepley if (dim > 1) {firstSubPoint[dim-1] = firstSubPoint[0] + numSubPoints[0];} 3139e6ccafaeSMatthew G Knepley if (dim > 2) {firstSubPoint[dim-2] = firstSubPoint[dim-1] + numSubPoints[dim-1];} 3140e6ccafaeSMatthew G Knepley for (d = 0; d <= dim; ++d) { 3141*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMLabelGetStratumIS(subpointMap, d, &subpointIS[d])); 3142*5f80ce2aSJacob Faibussowitsch if (subpointIS[d]) CHKERRQ(ISGetIndices(subpointIS[d], &subpoints[d])); 3143e6ccafaeSMatthew G Knepley } 3144412e9a14SMatthew G. Knepley /* We do not want this label automatically computed, instead we compute it here */ 3145*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMCreateLabel(subdm, "celltype")); 3146e6ccafaeSMatthew G Knepley for (d = 0; d <= dim; ++d) { 3147e6ccafaeSMatthew G Knepley for (p = 0; p < numSubPoints[d]; ++p) { 3148e6ccafaeSMatthew G Knepley const PetscInt point = subpoints[d][p]; 3149e6ccafaeSMatthew G Knepley const PetscInt subpoint = firstSubPoint[d] + p; 3150e6ccafaeSMatthew G Knepley const PetscInt *cone; 3151e6ccafaeSMatthew G Knepley PetscInt coneSize, coneSizeNew, c, val; 3152412e9a14SMatthew G. Knepley DMPolytopeType ct; 3153e6ccafaeSMatthew G Knepley 3154*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexGetConeSize(dm, point, &coneSize)); 3155*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexSetConeSize(subdm, subpoint, coneSize)); 3156*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexGetCellType(dm, point, &ct)); 3157*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexSetCellType(subdm, subpoint, ct)); 3158bec263e5SMatthew G. Knepley if (cellHeight && (d == dim)) { 3159*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexGetCone(dm, point, &cone)); 3160e6ccafaeSMatthew G Knepley for (c = 0, coneSizeNew = 0; c < coneSize; ++c) { 3161*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMLabelGetValue(subpointMap, cone[c], &val)); 3162e6ccafaeSMatthew G Knepley if (val >= 0) coneSizeNew++; 3163e6ccafaeSMatthew G Knepley } 3164*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexSetConeSize(subdm, subpoint, coneSizeNew)); 3165*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexSetCellType(subdm, subpoint, DM_POLYTOPE_FV_GHOST)); 3166e6ccafaeSMatthew G Knepley } 3167e6ccafaeSMatthew G Knepley } 3168e6ccafaeSMatthew G Knepley } 3169*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMLabelDestroy(&subpointMap)); 3170*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMSetUp(subdm)); 3171e6ccafaeSMatthew G Knepley /* Set cones */ 3172*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexGetMaxSizes(dm, &maxConeSize, NULL)); 3173*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscMalloc2(maxConeSize,&coneNew,maxConeSize,&orntNew)); 3174e6ccafaeSMatthew G Knepley for (d = 0; d <= dim; ++d) { 3175e6ccafaeSMatthew G Knepley for (p = 0; p < numSubPoints[d]; ++p) { 3176e6ccafaeSMatthew G Knepley const PetscInt point = subpoints[d][p]; 3177e6ccafaeSMatthew G Knepley const PetscInt subpoint = firstSubPoint[d] + p; 31780e49e2e2SMatthew G. Knepley const PetscInt *cone, *ornt; 31790d366550SMatthew G. Knepley PetscInt coneSize, subconeSize, coneSizeNew, c, subc, fornt = 0; 3180e6ccafaeSMatthew G Knepley 31810d366550SMatthew G. Knepley if (d == dim-1) { 31820d366550SMatthew G. Knepley const PetscInt *support, *cone, *ornt; 31830d366550SMatthew G. Knepley PetscInt supportSize, coneSize, s, subc; 31840d366550SMatthew G. Knepley 3185*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexGetSupport(dm, point, &support)); 3186*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexGetSupportSize(dm, point, &supportSize)); 31870d366550SMatthew G. Knepley for (s = 0; s < supportSize; ++s) { 3188412e9a14SMatthew G. Knepley PetscBool isHybrid; 3189412e9a14SMatthew G. Knepley 3190*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexCellIsHybrid_Internal(dm, support[s], &isHybrid)); 3191412e9a14SMatthew G. Knepley if (!isHybrid) continue; 3192*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscFindInt(support[s], numSubPoints[d+1], subpoints[d+1], &subc)); 31930d366550SMatthew G. Knepley if (subc >= 0) { 31940d366550SMatthew G. Knepley const PetscInt ccell = subpoints[d+1][subc]; 31950d366550SMatthew G. Knepley 3196*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexGetCone(dm, ccell, &cone)); 3197*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexGetConeSize(dm, ccell, &coneSize)); 3198*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexGetConeOrientation(dm, ccell, &ornt)); 31990d366550SMatthew G. Knepley for (c = 0; c < coneSize; ++c) { 32000d366550SMatthew G. Knepley if (cone[c] == point) { 32010d366550SMatthew G. Knepley fornt = ornt[c]; 32020d366550SMatthew G. Knepley break; 32030d366550SMatthew G. Knepley } 32040d366550SMatthew G. Knepley } 32050d366550SMatthew G. Knepley break; 32060d366550SMatthew G. Knepley } 32070d366550SMatthew G. Knepley } 32080d366550SMatthew G. Knepley } 3209*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexGetConeSize(dm, point, &coneSize)); 3210*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexGetConeSize(subdm, subpoint, &subconeSize)); 3211*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexGetCone(dm, point, &cone)); 3212*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexGetConeOrientation(dm, point, &ornt)); 3213e6ccafaeSMatthew G Knepley for (c = 0, coneSizeNew = 0; c < coneSize; ++c) { 3214*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscFindInt(cone[c], numSubPoints[d-1], subpoints[d-1], &subc)); 321501a2673eSMatthew G. Knepley if (subc >= 0) { 321601a2673eSMatthew G. Knepley coneNew[coneSizeNew] = firstSubPoint[d-1] + subc; 32173982b651SMatthew G. Knepley orntNew[coneSizeNew] = ornt[c]; 321801a2673eSMatthew G. Knepley ++coneSizeNew; 321901a2673eSMatthew G. Knepley } 3220e6ccafaeSMatthew G Knepley } 32212c71b3e2SJacob Faibussowitsch PetscCheckFalse(coneSizeNew != subconeSize,comm, PETSC_ERR_PLIB, "Number of cone points located %d does not match subcone size %d", coneSizeNew, subconeSize); 3222*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexSetCone(subdm, subpoint, coneNew)); 3223*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexSetConeOrientation(subdm, subpoint, orntNew)); 3224*5f80ce2aSJacob Faibussowitsch if (fornt < 0) CHKERRQ(DMPlexOrientPoint(subdm, subpoint, fornt)); 3225e6ccafaeSMatthew G Knepley } 3226e6ccafaeSMatthew G Knepley } 3227*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscFree2(coneNew,orntNew)); 3228*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexSymmetrize(subdm)); 3229*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexStratify(subdm)); 3230e6ccafaeSMatthew G Knepley /* Build coordinates */ 3231e6ccafaeSMatthew G Knepley { 3232e6ccafaeSMatthew G Knepley PetscSection coordSection, subCoordSection; 3233e6ccafaeSMatthew G Knepley Vec coordinates, subCoordinates; 3234e6ccafaeSMatthew G Knepley PetscScalar *coords, *subCoords; 3235c0e8cf5fSMatthew G. Knepley PetscInt cdim, numComp, coordSize; 323624640c55SToby Isaac const char *name; 3237e6ccafaeSMatthew G Knepley 3238*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMGetCoordinateDim(dm, &cdim)); 3239*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMGetCoordinateSection(dm, &coordSection)); 3240*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMGetCoordinatesLocal(dm, &coordinates)); 3241*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMGetCoordinateSection(subdm, &subCoordSection)); 3242*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscSectionSetNumFields(subCoordSection, 1)); 3243*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscSectionGetFieldComponents(coordSection, 0, &numComp)); 3244*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscSectionSetFieldComponents(subCoordSection, 0, numComp)); 3245*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscSectionSetChart(subCoordSection, firstSubPoint[0], firstSubPoint[0]+numSubPoints[0])); 3246e6ccafaeSMatthew G Knepley for (v = 0; v < numSubPoints[0]; ++v) { 3247e6ccafaeSMatthew G Knepley const PetscInt vertex = subpoints[0][v]; 3248e6ccafaeSMatthew G Knepley const PetscInt subvertex = firstSubPoint[0]+v; 3249e6ccafaeSMatthew G Knepley PetscInt dof; 3250e6ccafaeSMatthew G Knepley 3251*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscSectionGetDof(coordSection, vertex, &dof)); 3252*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscSectionSetDof(subCoordSection, subvertex, dof)); 3253*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscSectionSetFieldDof(subCoordSection, subvertex, 0, dof)); 3254e6ccafaeSMatthew G Knepley } 3255*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscSectionSetUp(subCoordSection)); 3256*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscSectionGetStorageSize(subCoordSection, &coordSize)); 3257*5f80ce2aSJacob Faibussowitsch CHKERRQ(VecCreate(PETSC_COMM_SELF, &subCoordinates)); 3258*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscObjectGetName((PetscObject)coordinates,&name)); 3259*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscObjectSetName((PetscObject)subCoordinates,name)); 3260*5f80ce2aSJacob Faibussowitsch CHKERRQ(VecSetSizes(subCoordinates, coordSize, PETSC_DETERMINE)); 3261*5f80ce2aSJacob Faibussowitsch CHKERRQ(VecSetBlockSize(subCoordinates, cdim)); 3262*5f80ce2aSJacob Faibussowitsch CHKERRQ(VecSetType(subCoordinates,VECSTANDARD)); 3263*5f80ce2aSJacob Faibussowitsch CHKERRQ(VecGetArray(coordinates, &coords)); 3264*5f80ce2aSJacob Faibussowitsch CHKERRQ(VecGetArray(subCoordinates, &subCoords)); 3265e6ccafaeSMatthew G Knepley for (v = 0; v < numSubPoints[0]; ++v) { 3266e6ccafaeSMatthew G Knepley const PetscInt vertex = subpoints[0][v]; 3267e6ccafaeSMatthew G Knepley const PetscInt subvertex = firstSubPoint[0]+v; 3268e6ccafaeSMatthew G Knepley PetscInt dof, off, sdof, soff, d; 3269e6ccafaeSMatthew G Knepley 3270*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscSectionGetDof(coordSection, vertex, &dof)); 3271*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscSectionGetOffset(coordSection, vertex, &off)); 3272*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscSectionGetDof(subCoordSection, subvertex, &sdof)); 3273*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscSectionGetOffset(subCoordSection, subvertex, &soff)); 32742c71b3e2SJacob Faibussowitsch PetscCheckFalse(dof != sdof,comm, PETSC_ERR_PLIB, "Coordinate dimension %d on subvertex %d, vertex %d should be %d", sdof, subvertex, vertex, dof); 3275efa14ee0SMatthew G Knepley for (d = 0; d < dof; ++d) subCoords[soff+d] = coords[off+d]; 3276e6ccafaeSMatthew G Knepley } 3277*5f80ce2aSJacob Faibussowitsch CHKERRQ(VecRestoreArray(coordinates, &coords)); 3278*5f80ce2aSJacob Faibussowitsch CHKERRQ(VecRestoreArray(subCoordinates, &subCoords)); 3279*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMSetCoordinatesLocal(subdm, subCoordinates)); 3280*5f80ce2aSJacob Faibussowitsch CHKERRQ(VecDestroy(&subCoordinates)); 3281e6ccafaeSMatthew G Knepley } 32823982b651SMatthew G. Knepley /* Build SF: We need this complexity because subpoints might not be selected on the owning process */ 32833982b651SMatthew G. Knepley { 32843982b651SMatthew G. Knepley PetscSF sfPoint, sfPointSub; 32853982b651SMatthew G. Knepley IS subpIS; 32863982b651SMatthew G. Knepley const PetscSFNode *remotePoints; 32873982b651SMatthew G. Knepley PetscSFNode *sremotePoints, *newLocalPoints, *newOwners; 32883982b651SMatthew G. Knepley const PetscInt *localPoints, *subpoints; 32893982b651SMatthew G. Knepley PetscInt *slocalPoints; 32903982b651SMatthew G. Knepley PetscInt numRoots, numLeaves, numSubpoints = 0, numSubroots, numSubleaves = 0, l, sl, ll, pStart, pEnd, p; 32913982b651SMatthew G. Knepley PetscMPIInt rank; 32923982b651SMatthew G. Knepley 3293*5f80ce2aSJacob Faibussowitsch CHKERRMPI(MPI_Comm_rank(PetscObjectComm((PetscObject) dm), &rank)); 3294*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMGetPointSF(dm, &sfPoint)); 3295*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMGetPointSF(subdm, &sfPointSub)); 3296*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexGetChart(dm, &pStart, &pEnd)); 3297*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexGetChart(subdm, NULL, &numSubroots)); 3298*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexGetSubpointIS(subdm, &subpIS)); 32993982b651SMatthew G. Knepley if (subpIS) { 3300*5f80ce2aSJacob Faibussowitsch CHKERRQ(ISGetIndices(subpIS, &subpoints)); 3301*5f80ce2aSJacob Faibussowitsch CHKERRQ(ISGetLocalSize(subpIS, &numSubpoints)); 33023982b651SMatthew G. Knepley } 3303*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscSFGetGraph(sfPoint, &numRoots, &numLeaves, &localPoints, &remotePoints)); 33043982b651SMatthew G. Knepley if (numRoots >= 0) { 3305*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscMalloc2(pEnd-pStart,&newLocalPoints,numRoots,&newOwners)); 33063982b651SMatthew G. Knepley for (p = 0; p < pEnd-pStart; ++p) { 33073982b651SMatthew G. Knepley newLocalPoints[p].rank = -2; 33083982b651SMatthew G. Knepley newLocalPoints[p].index = -2; 33093982b651SMatthew G. Knepley } 33103982b651SMatthew G. Knepley /* Set subleaves */ 33113982b651SMatthew G. Knepley for (l = 0; l < numLeaves; ++l) { 33123982b651SMatthew G. Knepley const PetscInt point = localPoints[l]; 33133982b651SMatthew G. Knepley const PetscInt subpoint = DMPlexFilterPoint_Internal(point, 0, numSubpoints, subpoints); 33143982b651SMatthew G. Knepley 33153982b651SMatthew G. Knepley if (subpoint < 0) continue; 33163982b651SMatthew G. Knepley newLocalPoints[point-pStart].rank = rank; 33173982b651SMatthew G. Knepley newLocalPoints[point-pStart].index = subpoint; 33183982b651SMatthew G. Knepley ++numSubleaves; 33193982b651SMatthew G. Knepley } 33203982b651SMatthew G. Knepley /* Must put in owned subpoints */ 33213982b651SMatthew G. Knepley for (p = pStart; p < pEnd; ++p) { 33223982b651SMatthew G. Knepley const PetscInt subpoint = DMPlexFilterPoint_Internal(p, 0, numSubpoints, subpoints); 33233982b651SMatthew G. Knepley 33243982b651SMatthew G. Knepley if (subpoint < 0) { 33253982b651SMatthew G. Knepley newOwners[p-pStart].rank = -3; 33263982b651SMatthew G. Knepley newOwners[p-pStart].index = -3; 33273982b651SMatthew G. Knepley } else { 33283982b651SMatthew G. Knepley newOwners[p-pStart].rank = rank; 33293982b651SMatthew G. Knepley newOwners[p-pStart].index = subpoint; 33303982b651SMatthew G. Knepley } 33313982b651SMatthew G. Knepley } 3332*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscSFReduceBegin(sfPoint, MPIU_2INT, newLocalPoints, newOwners, MPI_MAXLOC)); 3333*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscSFReduceEnd(sfPoint, MPIU_2INT, newLocalPoints, newOwners, MPI_MAXLOC)); 3334*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscSFBcastBegin(sfPoint, MPIU_2INT, newOwners, newLocalPoints,MPI_REPLACE)); 3335*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscSFBcastEnd(sfPoint, MPIU_2INT, newOwners, newLocalPoints,MPI_REPLACE)); 3336*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscMalloc1(numSubleaves, &slocalPoints)); 3337*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscMalloc1(numSubleaves, &sremotePoints)); 33383982b651SMatthew G. Knepley for (l = 0, sl = 0, ll = 0; l < numLeaves; ++l) { 33393982b651SMatthew G. Knepley const PetscInt point = localPoints[l]; 33403982b651SMatthew G. Knepley const PetscInt subpoint = DMPlexFilterPoint_Internal(point, 0, numSubpoints, subpoints); 33413982b651SMatthew G. Knepley 33423982b651SMatthew G. Knepley if (subpoint < 0) continue; 33433982b651SMatthew G. Knepley if (newLocalPoints[point].rank == rank) {++ll; continue;} 33443982b651SMatthew G. Knepley slocalPoints[sl] = subpoint; 33453982b651SMatthew G. Knepley sremotePoints[sl].rank = newLocalPoints[point].rank; 33463982b651SMatthew G. Knepley sremotePoints[sl].index = newLocalPoints[point].index; 33472c71b3e2SJacob Faibussowitsch PetscCheckFalse(sremotePoints[sl].rank < 0,PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid remote rank for local point %d", point); 33482c71b3e2SJacob Faibussowitsch PetscCheckFalse(sremotePoints[sl].index < 0,PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid remote subpoint for local point %d", point); 33493982b651SMatthew G. Knepley ++sl; 33503982b651SMatthew G. Knepley } 33512c71b3e2SJacob Faibussowitsch PetscCheckFalse(sl + ll != numSubleaves,PETSC_COMM_SELF, PETSC_ERR_PLIB, "Mismatch in number of subleaves %d + %d != %d", sl, ll, numSubleaves); 3352*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscFree2(newLocalPoints,newOwners)); 3353*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscSFSetGraph(sfPointSub, numSubroots, sl, slocalPoints, PETSC_OWN_POINTER, sremotePoints, PETSC_OWN_POINTER)); 33543982b651SMatthew G. Knepley } 33553982b651SMatthew G. Knepley if (subpIS) { 3356*5f80ce2aSJacob Faibussowitsch CHKERRQ(ISRestoreIndices(subpIS, &subpoints)); 33573982b651SMatthew G. Knepley } 33583982b651SMatthew G. Knepley } 3359212103e5SMatthew Knepley /* Filter labels */ 3360*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexFilterLabels_Internal(dm, numSubPoints, subpoints, firstSubPoint, subdm)); 3361efa14ee0SMatthew G Knepley /* Cleanup */ 3362e6ccafaeSMatthew G Knepley for (d = 0; d <= dim; ++d) { 3363*5f80ce2aSJacob Faibussowitsch if (subpointIS[d]) CHKERRQ(ISRestoreIndices(subpointIS[d], &subpoints[d])); 3364*5f80ce2aSJacob Faibussowitsch CHKERRQ(ISDestroy(&subpointIS[d])); 3365e6ccafaeSMatthew G Knepley } 3366*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscFree4(numSubPoints,firstSubPoint,subpointIS,subpoints)); 3367e6ccafaeSMatthew G Knepley PetscFunctionReturn(0); 3368e6ccafaeSMatthew G Knepley } 3369e6ccafaeSMatthew G Knepley 3370158acfadSMatthew G. Knepley static PetscErrorCode DMPlexCreateSubmesh_Interpolated(DM dm, DMLabel vertexLabel, PetscInt value, PetscBool markedFaces, DM subdm) 33713982b651SMatthew G. Knepley { 33723982b651SMatthew G. Knepley PetscFunctionBegin; 3373*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexCreateSubmeshGeneric_Interpolated(dm, vertexLabel, value, markedFaces, PETSC_FALSE, 1, subdm)); 33743982b651SMatthew G. Knepley PetscFunctionReturn(0); 33753982b651SMatthew G. Knepley } 33763982b651SMatthew G. Knepley 3377d0fa310fSMatthew G. Knepley /*@ 3378e6ccafaeSMatthew G Knepley DMPlexCreateSubmesh - Extract a hypersurface from the mesh using vertices defined by a label 3379e6ccafaeSMatthew G Knepley 3380e6ccafaeSMatthew G Knepley Input Parameters: 3381e6ccafaeSMatthew G Knepley + dm - The original mesh 3382158acfadSMatthew G. Knepley . vertexLabel - The DMLabel marking points contained in the surface 3383158acfadSMatthew G. Knepley . value - The label value to use 3384158acfadSMatthew G. Knepley - markedFaces - PETSC_TRUE if surface faces are marked in addition to vertices, PETSC_FALSE if only vertices are marked 3385e6ccafaeSMatthew G Knepley 3386e6ccafaeSMatthew G Knepley Output Parameter: 3387e6ccafaeSMatthew G Knepley . subdm - The surface mesh 3388e6ccafaeSMatthew G Knepley 3389e6ccafaeSMatthew G Knepley Note: This function produces a DMLabel mapping original points in the submesh to their depth. This can be obtained using DMPlexGetSubpointMap(). 3390e6ccafaeSMatthew G Knepley 3391e6ccafaeSMatthew G Knepley Level: developer 3392e6ccafaeSMatthew G Knepley 3393c58f1c22SToby Isaac .seealso: DMPlexGetSubpointMap(), DMGetLabel(), DMLabelSetValue() 3394830e53efSMatthew G. Knepley @*/ 3395158acfadSMatthew G. Knepley PetscErrorCode DMPlexCreateSubmesh(DM dm, DMLabel vertexLabel, PetscInt value, PetscBool markedFaces, DM *subdm) 3396e6ccafaeSMatthew G Knepley { 3397827c4036SVaclav Hapla DMPlexInterpolatedFlag interpolated; 3398827c4036SVaclav Hapla PetscInt dim, cdim; 3399e6ccafaeSMatthew G Knepley 3400e6ccafaeSMatthew G Knepley PetscFunctionBegin; 3401e6ccafaeSMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 3402064a246eSJacob Faibussowitsch PetscValidPointer(subdm, 5); 3403*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMGetDimension(dm, &dim)); 3404*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMCreate(PetscObjectComm((PetscObject)dm), subdm)); 3405*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMSetType(*subdm, DMPLEX)); 3406*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMSetDimension(*subdm, dim-1)); 3407*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMGetCoordinateDim(dm, &cdim)); 3408*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMSetCoordinateDim(*subdm, cdim)); 3409*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexIsInterpolated(dm, &interpolated)); 34102c71b3e2SJacob Faibussowitsch PetscCheckFalse(interpolated == DMPLEX_INTERPOLATED_PARTIAL,PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Not for partially interpolated meshes"); 3411827c4036SVaclav Hapla if (interpolated) { 3412*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexCreateSubmesh_Interpolated(dm, vertexLabel, value, markedFaces, *subdm)); 3413e6ccafaeSMatthew G Knepley } else { 3414*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexCreateSubmesh_Uninterpolated(dm, vertexLabel, value, *subdm)); 3415e6ccafaeSMatthew G Knepley } 3416*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexCopy_Internal(dm, PETSC_TRUE, *subdm)); 3417e6ccafaeSMatthew G Knepley PetscFunctionReturn(0); 3418e6ccafaeSMatthew G Knepley } 3419e6ccafaeSMatthew G Knepley 342027c04023SMatthew G. Knepley static PetscErrorCode DMPlexCreateCohesiveSubmesh_Uninterpolated(DM dm, PetscBool hasLagrange, const char label[], PetscInt value, DM subdm) 3421766ab985SMatthew G. Knepley { 3422766ab985SMatthew G. Knepley MPI_Comm comm; 3423766ab985SMatthew G. Knepley DMLabel subpointMap; 3424766ab985SMatthew G. Knepley IS subvertexIS; 3425766ab985SMatthew G. Knepley const PetscInt *subVertices; 3426fed694aaSMatthew G. Knepley PetscInt numSubVertices, firstSubVertex, numSubCells, *subCells = NULL; 3427766ab985SMatthew G. Knepley PetscInt *subface, maxConeSize, numSubFaces, firstSubFace, newFacePoint, nFV; 3428412e9a14SMatthew G. Knepley PetscInt c, f; 3429766ab985SMatthew G. Knepley 3430766ab985SMatthew G. Knepley PetscFunctionBegin; 3431*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscObjectGetComm((PetscObject)dm, &comm)); 3432766ab985SMatthew G. Knepley /* Create subpointMap which marks the submesh */ 3433*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMLabelCreate(PETSC_COMM_SELF, "subpoint_map", &subpointMap)); 3434*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexSetSubpointMap(subdm, subpointMap)); 3435*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMLabelDestroy(&subpointMap)); 3436*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexMarkCohesiveSubmesh_Uninterpolated(dm, hasLagrange, label, value, subpointMap, &numSubFaces, &nFV, &subCells, subdm)); 3437766ab985SMatthew G. Knepley /* Setup chart */ 3438*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMLabelGetStratumSize(subpointMap, 0, &numSubVertices)); 3439*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMLabelGetStratumSize(subpointMap, 2, &numSubCells)); 3440*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexSetChart(subdm, 0, numSubCells+numSubFaces+numSubVertices)); 3441*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexSetVTKCellHeight(subdm, 1)); 3442766ab985SMatthew G. Knepley /* Set cone sizes */ 3443766ab985SMatthew G. Knepley firstSubVertex = numSubCells; 3444766ab985SMatthew G. Knepley firstSubFace = numSubCells+numSubVertices; 3445766ab985SMatthew G. Knepley newFacePoint = firstSubFace; 3446*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMLabelGetStratumIS(subpointMap, 0, &subvertexIS)); 3447*5f80ce2aSJacob Faibussowitsch if (subvertexIS) CHKERRQ(ISGetIndices(subvertexIS, &subVertices)); 3448766ab985SMatthew G. Knepley for (c = 0; c < numSubCells; ++c) { 3449*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexSetConeSize(subdm, c, 1)); 3450766ab985SMatthew G. Knepley } 3451766ab985SMatthew G. Knepley for (f = firstSubFace; f < firstSubFace+numSubFaces; ++f) { 3452*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexSetConeSize(subdm, f, nFV)); 3453766ab985SMatthew G. Knepley } 3454*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMSetUp(subdm)); 3455766ab985SMatthew G. Knepley /* Create face cones */ 3456*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexGetMaxSizes(dm, &maxConeSize, NULL)); 3457*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMGetWorkArray(subdm, maxConeSize, MPIU_INT, (void**) &subface)); 3458766ab985SMatthew G. Knepley for (c = 0; c < numSubCells; ++c) { 3459766ab985SMatthew G. Knepley const PetscInt cell = subCells[c]; 3460766ab985SMatthew G. Knepley const PetscInt subcell = c; 346187feddfdSMatthew G. Knepley const PetscInt *cone, *cells; 3462412e9a14SMatthew G. Knepley PetscBool isHybrid; 346387feddfdSMatthew G. Knepley PetscInt numCells, subVertex, p, v; 3464766ab985SMatthew G. Knepley 3465*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexCellIsHybrid_Internal(dm, cell, &isHybrid)); 3466412e9a14SMatthew G. Knepley if (!isHybrid) continue; 3467*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexGetCone(dm, cell, &cone)); 346887feddfdSMatthew G. Knepley for (v = 0; v < nFV; ++v) { 3469*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscFindInt(cone[v], numSubVertices, subVertices, &subVertex)); 347087feddfdSMatthew G. Knepley subface[v] = firstSubVertex+subVertex; 347187feddfdSMatthew G. Knepley } 3472*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexSetCone(subdm, newFacePoint, subface)); 3473*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexSetCone(subdm, subcell, &newFacePoint)); 3474*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexGetJoin(dm, nFV, cone, &numCells, &cells)); 347527234c99SMatthew G. Knepley /* Not true in parallel 34762c71b3e2SJacob Faibussowitsch PetscCheckFalse(numCells != 2,PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Cohesive cells should separate two cells"); */ 347787feddfdSMatthew G. Knepley for (p = 0; p < numCells; ++p) { 347887feddfdSMatthew G. Knepley PetscInt negsubcell; 3479412e9a14SMatthew G. Knepley PetscBool isHybrid; 3480766ab985SMatthew G. Knepley 3481*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexCellIsHybrid_Internal(dm, cells[p], &isHybrid)); 3482412e9a14SMatthew G. Knepley if (isHybrid) continue; 348387feddfdSMatthew G. Knepley /* I know this is a crap search */ 348487feddfdSMatthew G. Knepley for (negsubcell = 0; negsubcell < numSubCells; ++negsubcell) { 348587feddfdSMatthew G. Knepley if (subCells[negsubcell] == cells[p]) break; 3486766ab985SMatthew G. Knepley } 34872c71b3e2SJacob Faibussowitsch PetscCheckFalse(negsubcell == numSubCells,PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Could not find negative face neighbor for cohesive cell %d", cell); 3488*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexSetCone(subdm, negsubcell, &newFacePoint)); 3489766ab985SMatthew G. Knepley } 3490*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexRestoreJoin(dm, nFV, cone, &numCells, &cells)); 349187feddfdSMatthew G. Knepley ++newFacePoint; 3492766ab985SMatthew G. Knepley } 3493*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMRestoreWorkArray(subdm, maxConeSize, MPIU_INT, (void**) &subface)); 3494*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexSymmetrize(subdm)); 3495*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexStratify(subdm)); 3496766ab985SMatthew G. Knepley /* Build coordinates */ 3497766ab985SMatthew G. Knepley { 3498766ab985SMatthew G. Knepley PetscSection coordSection, subCoordSection; 3499766ab985SMatthew G. Knepley Vec coordinates, subCoordinates; 3500766ab985SMatthew G. Knepley PetscScalar *coords, *subCoords; 3501c0e8cf5fSMatthew G. Knepley PetscInt cdim, numComp, coordSize, v; 350224640c55SToby Isaac const char *name; 3503766ab985SMatthew G. Knepley 3504*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMGetCoordinateDim(dm, &cdim)); 3505*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMGetCoordinateSection(dm, &coordSection)); 3506*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMGetCoordinatesLocal(dm, &coordinates)); 3507*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMGetCoordinateSection(subdm, &subCoordSection)); 3508*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscSectionSetNumFields(subCoordSection, 1)); 3509*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscSectionGetFieldComponents(coordSection, 0, &numComp)); 3510*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscSectionSetFieldComponents(subCoordSection, 0, numComp)); 3511*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscSectionSetChart(subCoordSection, firstSubVertex, firstSubVertex+numSubVertices)); 3512766ab985SMatthew G. Knepley for (v = 0; v < numSubVertices; ++v) { 3513766ab985SMatthew G. Knepley const PetscInt vertex = subVertices[v]; 3514766ab985SMatthew G. Knepley const PetscInt subvertex = firstSubVertex+v; 3515766ab985SMatthew G. Knepley PetscInt dof; 3516766ab985SMatthew G. Knepley 3517*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscSectionGetDof(coordSection, vertex, &dof)); 3518*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscSectionSetDof(subCoordSection, subvertex, dof)); 3519*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscSectionSetFieldDof(subCoordSection, subvertex, 0, dof)); 3520766ab985SMatthew G. Knepley } 3521*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscSectionSetUp(subCoordSection)); 3522*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscSectionGetStorageSize(subCoordSection, &coordSize)); 3523*5f80ce2aSJacob Faibussowitsch CHKERRQ(VecCreate(PETSC_COMM_SELF, &subCoordinates)); 3524*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscObjectGetName((PetscObject)coordinates,&name)); 3525*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscObjectSetName((PetscObject)subCoordinates,name)); 3526*5f80ce2aSJacob Faibussowitsch CHKERRQ(VecSetSizes(subCoordinates, coordSize, PETSC_DETERMINE)); 3527*5f80ce2aSJacob Faibussowitsch CHKERRQ(VecSetBlockSize(subCoordinates, cdim)); 3528*5f80ce2aSJacob Faibussowitsch CHKERRQ(VecSetType(subCoordinates,VECSTANDARD)); 3529*5f80ce2aSJacob Faibussowitsch CHKERRQ(VecGetArray(coordinates, &coords)); 3530*5f80ce2aSJacob Faibussowitsch CHKERRQ(VecGetArray(subCoordinates, &subCoords)); 3531766ab985SMatthew G. Knepley for (v = 0; v < numSubVertices; ++v) { 3532766ab985SMatthew G. Knepley const PetscInt vertex = subVertices[v]; 3533766ab985SMatthew G. Knepley const PetscInt subvertex = firstSubVertex+v; 3534766ab985SMatthew G. Knepley PetscInt dof, off, sdof, soff, d; 3535766ab985SMatthew G. Knepley 3536*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscSectionGetDof(coordSection, vertex, &dof)); 3537*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscSectionGetOffset(coordSection, vertex, &off)); 3538*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscSectionGetDof(subCoordSection, subvertex, &sdof)); 3539*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscSectionGetOffset(subCoordSection, subvertex, &soff)); 35402c71b3e2SJacob Faibussowitsch PetscCheckFalse(dof != sdof,comm, PETSC_ERR_PLIB, "Coordinate dimension %d on subvertex %d, vertex %d should be %d", sdof, subvertex, vertex, dof); 3541766ab985SMatthew G. Knepley for (d = 0; d < dof; ++d) subCoords[soff+d] = coords[off+d]; 3542766ab985SMatthew G. Knepley } 3543*5f80ce2aSJacob Faibussowitsch CHKERRQ(VecRestoreArray(coordinates, &coords)); 3544*5f80ce2aSJacob Faibussowitsch CHKERRQ(VecRestoreArray(subCoordinates, &subCoords)); 3545*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMSetCoordinatesLocal(subdm, subCoordinates)); 3546*5f80ce2aSJacob Faibussowitsch CHKERRQ(VecDestroy(&subCoordinates)); 3547766ab985SMatthew G. Knepley } 3548aca35d17SMatthew G. Knepley /* Build SF */ 3549aca35d17SMatthew G. Knepley CHKMEMQ; 3550aca35d17SMatthew G. Knepley { 3551aca35d17SMatthew G. Knepley PetscSF sfPoint, sfPointSub; 3552aca35d17SMatthew G. Knepley const PetscSFNode *remotePoints; 3553bdcf2095SMatthew G. Knepley PetscSFNode *sremotePoints, *newLocalPoints, *newOwners; 3554aca35d17SMatthew G. Knepley const PetscInt *localPoints; 3555bdcf2095SMatthew G. Knepley PetscInt *slocalPoints; 355649c26ae4SMatthew G. Knepley PetscInt numRoots, numLeaves, numSubRoots = numSubCells+numSubFaces+numSubVertices, numSubLeaves = 0, l, sl, ll, pStart, pEnd, p, vStart, vEnd; 3557bdcf2095SMatthew G. Knepley PetscMPIInt rank; 3558aca35d17SMatthew G. Knepley 3559*5f80ce2aSJacob Faibussowitsch CHKERRMPI(MPI_Comm_rank(PetscObjectComm((PetscObject) dm), &rank)); 3560*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMGetPointSF(dm, &sfPoint)); 3561*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMGetPointSF(subdm, &sfPointSub)); 3562*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexGetChart(dm, &pStart, &pEnd)); 3563*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexGetDepthStratum(dm, 0, &vStart, &vEnd)); 3564*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscSFGetGraph(sfPoint, &numRoots, &numLeaves, &localPoints, &remotePoints)); 3565aca35d17SMatthew G. Knepley if (numRoots >= 0) { 3566aca35d17SMatthew G. Knepley /* Only vertices should be shared */ 3567*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscMalloc2(pEnd-pStart,&newLocalPoints,numRoots,&newOwners)); 3568bdcf2095SMatthew G. Knepley for (p = 0; p < pEnd-pStart; ++p) { 3569bdcf2095SMatthew G. Knepley newLocalPoints[p].rank = -2; 3570bdcf2095SMatthew G. Knepley newLocalPoints[p].index = -2; 3571bdcf2095SMatthew G. Knepley } 35729e0823b2SMatthew G. Knepley /* Set subleaves */ 3573aca35d17SMatthew G. Knepley for (l = 0; l < numLeaves; ++l) { 3574aca35d17SMatthew G. Knepley const PetscInt point = localPoints[l]; 3575bdcf2095SMatthew G. Knepley const PetscInt subPoint = DMPlexFilterPoint_Internal(point, firstSubVertex, numSubVertices, subVertices); 3576aca35d17SMatthew G. Knepley 35772c71b3e2SJacob Faibussowitsch PetscCheckFalse((point < vStart) && (point >= vEnd),PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Should not be mapping anything but vertices, %d", point); 3578bdcf2095SMatthew G. Knepley if (subPoint < 0) continue; 3579bdcf2095SMatthew G. Knepley newLocalPoints[point-pStart].rank = rank; 3580bdcf2095SMatthew G. Knepley newLocalPoints[point-pStart].index = subPoint; 3581bdcf2095SMatthew G. Knepley ++numSubLeaves; 3582aca35d17SMatthew G. Knepley } 35839e0823b2SMatthew G. Knepley /* Must put in owned subpoints */ 35849e0823b2SMatthew G. Knepley for (p = pStart; p < pEnd; ++p) { 35859e0823b2SMatthew G. Knepley const PetscInt subPoint = DMPlexFilterPoint_Internal(p, firstSubVertex, numSubVertices, subVertices); 35869e0823b2SMatthew G. Knepley 35879e0823b2SMatthew G. Knepley if (subPoint < 0) { 35889e0823b2SMatthew G. Knepley newOwners[p-pStart].rank = -3; 35899e0823b2SMatthew G. Knepley newOwners[p-pStart].index = -3; 35909e0823b2SMatthew G. Knepley } else { 35919e0823b2SMatthew G. Knepley newOwners[p-pStart].rank = rank; 35929e0823b2SMatthew G. Knepley newOwners[p-pStart].index = subPoint; 35939e0823b2SMatthew G. Knepley } 3594bdcf2095SMatthew G. Knepley } 3595*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscSFReduceBegin(sfPoint, MPIU_2INT, newLocalPoints, newOwners, MPI_MAXLOC)); 3596*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscSFReduceEnd(sfPoint, MPIU_2INT, newLocalPoints, newOwners, MPI_MAXLOC)); 3597*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscSFBcastBegin(sfPoint, MPIU_2INT, newOwners, newLocalPoints,MPI_REPLACE)); 3598*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscSFBcastEnd(sfPoint, MPIU_2INT, newOwners, newLocalPoints,MPI_REPLACE)); 3599*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscMalloc1(numSubLeaves, &slocalPoints)); 3600*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscMalloc1(numSubLeaves, &sremotePoints)); 360149c26ae4SMatthew G. Knepley for (l = 0, sl = 0, ll = 0; l < numLeaves; ++l) { 3602bdcf2095SMatthew G. Knepley const PetscInt point = localPoints[l]; 3603bdcf2095SMatthew G. Knepley const PetscInt subPoint = DMPlexFilterPoint_Internal(point, firstSubVertex, numSubVertices, subVertices); 3604aca35d17SMatthew G. Knepley 3605aca35d17SMatthew G. Knepley if (subPoint < 0) continue; 360649c26ae4SMatthew G. Knepley if (newLocalPoints[point].rank == rank) {++ll; continue;} 3607aca35d17SMatthew G. Knepley slocalPoints[sl] = subPoint; 3608bdcf2095SMatthew G. Knepley sremotePoints[sl].rank = newLocalPoints[point].rank; 3609bdcf2095SMatthew G. Knepley sremotePoints[sl].index = newLocalPoints[point].index; 36102c71b3e2SJacob Faibussowitsch PetscCheckFalse(sremotePoints[sl].rank < 0,PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid remote rank for local point %d", point); 36112c71b3e2SJacob Faibussowitsch PetscCheckFalse(sremotePoints[sl].index < 0,PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid remote subpoint for local point %d", point); 3612aca35d17SMatthew G. Knepley ++sl; 3613aca35d17SMatthew G. Knepley } 3614*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscFree2(newLocalPoints,newOwners)); 36152c71b3e2SJacob Faibussowitsch PetscCheckFalse(sl + ll != numSubLeaves,PETSC_COMM_SELF, PETSC_ERR_PLIB, "Mismatch in number of subleaves %d + %d != %d", sl, ll, numSubLeaves); 3616*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscSFSetGraph(sfPointSub, numSubRoots, sl, slocalPoints, PETSC_OWN_POINTER, sremotePoints, PETSC_OWN_POINTER)); 3617aca35d17SMatthew G. Knepley } 3618aca35d17SMatthew G. Knepley } 3619aca35d17SMatthew G. Knepley CHKMEMQ; 3620766ab985SMatthew G. Knepley /* Cleanup */ 3621*5f80ce2aSJacob Faibussowitsch if (subvertexIS) CHKERRQ(ISRestoreIndices(subvertexIS, &subVertices)); 3622*5f80ce2aSJacob Faibussowitsch CHKERRQ(ISDestroy(&subvertexIS)); 3623*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscFree(subCells)); 3624766ab985SMatthew G. Knepley PetscFunctionReturn(0); 3625766ab985SMatthew G. Knepley } 3626766ab985SMatthew G. Knepley 36273982b651SMatthew G. Knepley static PetscErrorCode DMPlexCreateCohesiveSubmesh_Interpolated(DM dm, const char labelname[], PetscInt value, DM subdm) 3628766ab985SMatthew G. Knepley { 36293982b651SMatthew G. Knepley DMLabel label = NULL; 3630766ab985SMatthew G. Knepley 3631766ab985SMatthew G. Knepley PetscFunctionBegin; 3632*5f80ce2aSJacob Faibussowitsch if (labelname) CHKERRQ(DMGetLabel(dm, labelname, &label)); 3633*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexCreateSubmeshGeneric_Interpolated(dm, label, value, PETSC_FALSE, PETSC_TRUE, 1, subdm)); 3634766ab985SMatthew G. Knepley PetscFunctionReturn(0); 3635766ab985SMatthew G. Knepley } 3636766ab985SMatthew G. Knepley 3637c08575a3SMatthew G. Knepley /*@C 36387d2fefb6SMatthew G. Knepley DMPlexCreateCohesiveSubmesh - Extract from a mesh with cohesive cells the hypersurface defined by one face of the cells. Optionally, a Label can be given to restrict the cells. 3639766ab985SMatthew G. Knepley 3640766ab985SMatthew G. Knepley Input Parameters: 3641766ab985SMatthew G. Knepley + dm - The original mesh 364227c04023SMatthew G. Knepley . hasLagrange - The mesh has Lagrange unknowns in the cohesive cells 36437afc1a8bSJed Brown . label - A label name, or NULL 364427c04023SMatthew G. Knepley - value - A label value 3645766ab985SMatthew G. Knepley 3646766ab985SMatthew G. Knepley Output Parameter: 3647766ab985SMatthew G. Knepley . subdm - The surface mesh 3648766ab985SMatthew G. Knepley 3649766ab985SMatthew G. Knepley Note: This function produces a DMLabel mapping original points in the submesh to their depth. This can be obtained using DMPlexGetSubpointMap(). 3650766ab985SMatthew G. Knepley 3651766ab985SMatthew G. Knepley Level: developer 3652766ab985SMatthew G. Knepley 3653766ab985SMatthew G. Knepley .seealso: DMPlexGetSubpointMap(), DMPlexCreateSubmesh() 3654c08575a3SMatthew G. Knepley @*/ 365527c04023SMatthew G. Knepley PetscErrorCode DMPlexCreateCohesiveSubmesh(DM dm, PetscBool hasLagrange, const char label[], PetscInt value, DM *subdm) 3656766ab985SMatthew G. Knepley { 3657c0e8cf5fSMatthew G. Knepley PetscInt dim, cdim, depth; 3658766ab985SMatthew G. Knepley 3659766ab985SMatthew G. Knepley PetscFunctionBegin; 3660766ab985SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 366127c04023SMatthew G. Knepley PetscValidPointer(subdm, 5); 3662*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMGetDimension(dm, &dim)); 3663*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexGetDepth(dm, &depth)); 3664*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMCreate(PetscObjectComm((PetscObject)dm), subdm)); 3665*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMSetType(*subdm, DMPLEX)); 3666*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMSetDimension(*subdm, dim-1)); 3667*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMGetCoordinateDim(dm, &cdim)); 3668*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMSetCoordinateDim(*subdm, cdim)); 3669766ab985SMatthew G. Knepley if (depth == dim) { 3670*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexCreateCohesiveSubmesh_Interpolated(dm, label, value, *subdm)); 3671766ab985SMatthew G. Knepley } else { 3672*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexCreateCohesiveSubmesh_Uninterpolated(dm, hasLagrange, label, value, *subdm)); 3673e6ccafaeSMatthew G Knepley } 3674*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexCopy_Internal(dm, PETSC_TRUE, *subdm)); 3675e6ccafaeSMatthew G Knepley PetscFunctionReturn(0); 3676e6ccafaeSMatthew G Knepley } 3677e6ccafaeSMatthew G Knepley 3678bec263e5SMatthew G. Knepley /*@ 3679bec263e5SMatthew G. Knepley DMPlexFilter - Extract a subset of mesh cells defined by a label as a separate mesh 3680bec263e5SMatthew G. Knepley 3681bec263e5SMatthew G. Knepley Input Parameters: 3682bec263e5SMatthew G. Knepley + dm - The original mesh 3683bec263e5SMatthew G. Knepley . cellLabel - The DMLabel marking cells contained in the new mesh 3684bec263e5SMatthew G. Knepley - value - The label value to use 3685bec263e5SMatthew G. Knepley 3686bec263e5SMatthew G. Knepley Output Parameter: 3687bec263e5SMatthew G. Knepley . subdm - The new mesh 3688bec263e5SMatthew G. Knepley 3689bec263e5SMatthew G. Knepley Note: This function produces a DMLabel mapping original points in the submesh to their depth. This can be obtained using DMPlexGetSubpointMap(). 3690bec263e5SMatthew G. Knepley 3691bec263e5SMatthew G. Knepley Level: developer 3692bec263e5SMatthew G. Knepley 3693c58f1c22SToby Isaac .seealso: DMPlexGetSubpointMap(), DMGetLabel(), DMLabelSetValue() 3694bec263e5SMatthew G. Knepley @*/ 3695bec263e5SMatthew G. Knepley PetscErrorCode DMPlexFilter(DM dm, DMLabel cellLabel, PetscInt value, DM *subdm) 3696bec263e5SMatthew G. Knepley { 3697bec263e5SMatthew G. Knepley PetscInt dim; 3698bec263e5SMatthew G. Knepley 3699bec263e5SMatthew G. Knepley PetscFunctionBegin; 3700bec263e5SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 3701064a246eSJacob Faibussowitsch PetscValidPointer(subdm, 4); 3702*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMGetDimension(dm, &dim)); 3703*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMCreate(PetscObjectComm((PetscObject) dm), subdm)); 3704*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMSetType(*subdm, DMPLEX)); 3705*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMSetDimension(*subdm, dim)); 3706bec263e5SMatthew G. Knepley /* Extract submesh in place, could be empty on some procs, could have inconsistency if procs do not both extract a shared cell */ 3707*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexCreateSubmeshGeneric_Interpolated(dm, cellLabel, value, PETSC_FALSE, PETSC_FALSE, 0, *subdm)); 3708*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexCopy_Internal(dm, PETSC_TRUE, *subdm)); 3709bec263e5SMatthew G. Knepley PetscFunctionReturn(0); 3710bec263e5SMatthew G. Knepley } 3711bec263e5SMatthew G. Knepley 371264beef6dSMatthew G. Knepley /*@ 371364beef6dSMatthew G. Knepley DMPlexGetSubpointMap - Returns a DMLabel with point dimension as values 371464beef6dSMatthew G. Knepley 371564beef6dSMatthew G. Knepley Input Parameter: 371664beef6dSMatthew G. Knepley . dm - The submesh DM 371764beef6dSMatthew G. Knepley 371864beef6dSMatthew G. Knepley Output Parameter: 371964beef6dSMatthew G. Knepley . subpointMap - The DMLabel of all the points from the original mesh in this submesh, or NULL if this is not a submesh 372064beef6dSMatthew G. Knepley 372164beef6dSMatthew G. Knepley Level: developer 372264beef6dSMatthew G. Knepley 372397d8846cSMatthew Knepley .seealso: DMPlexCreateSubmesh(), DMPlexGetSubpointIS() 372464beef6dSMatthew G. Knepley @*/ 3725e6ccafaeSMatthew G Knepley PetscErrorCode DMPlexGetSubpointMap(DM dm, DMLabel *subpointMap) 3726e6ccafaeSMatthew G Knepley { 3727e6ccafaeSMatthew G Knepley PetscFunctionBegin; 3728e6ccafaeSMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 3729e6ccafaeSMatthew G Knepley PetscValidPointer(subpointMap, 2); 373065663942SMatthew G. Knepley *subpointMap = ((DM_Plex*) dm->data)->subpointMap; 3731e6ccafaeSMatthew G Knepley PetscFunctionReturn(0); 3732e6ccafaeSMatthew G Knepley } 3733e6ccafaeSMatthew G Knepley 3734c08575a3SMatthew G. Knepley /*@ 3735c08575a3SMatthew G. Knepley DMPlexSetSubpointMap - Sets the DMLabel with point dimension as values 3736c08575a3SMatthew G. Knepley 3737c08575a3SMatthew G. Knepley Input Parameters: 3738c08575a3SMatthew G. Knepley + dm - The submesh DM 3739c08575a3SMatthew G. Knepley - subpointMap - The DMLabel of all the points from the original mesh in this submesh 3740c08575a3SMatthew G. Knepley 3741c08575a3SMatthew G. Knepley Note: Should normally not be called by the user, since it is set in DMPlexCreateSubmesh() 3742c08575a3SMatthew G. Knepley 3743c08575a3SMatthew G. Knepley Level: developer 3744c08575a3SMatthew G. Knepley 374597d8846cSMatthew Knepley .seealso: DMPlexCreateSubmesh(), DMPlexGetSubpointIS() 3746c08575a3SMatthew G. Knepley @*/ 3747e6ccafaeSMatthew G Knepley PetscErrorCode DMPlexSetSubpointMap(DM dm, DMLabel subpointMap) 3748e6ccafaeSMatthew G Knepley { 3749e6ccafaeSMatthew G Knepley DM_Plex *mesh = (DM_Plex *) dm->data; 3750285d324eSMatthew G. Knepley DMLabel tmp; 3751e6ccafaeSMatthew G Knepley 3752e6ccafaeSMatthew G Knepley PetscFunctionBegin; 3753e6ccafaeSMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 3754285d324eSMatthew G. Knepley tmp = mesh->subpointMap; 3755e6ccafaeSMatthew G Knepley mesh->subpointMap = subpointMap; 3756*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscObjectReference((PetscObject) mesh->subpointMap)); 3757*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMLabelDestroy(&tmp)); 3758e6ccafaeSMatthew G Knepley PetscFunctionReturn(0); 3759e6ccafaeSMatthew G Knepley } 3760e6ccafaeSMatthew G Knepley 376197d8846cSMatthew Knepley static PetscErrorCode DMPlexCreateSubpointIS_Internal(DM dm, IS *subpointIS) 376297d8846cSMatthew Knepley { 376397d8846cSMatthew Knepley DMLabel spmap; 376497d8846cSMatthew Knepley PetscInt depth, d; 376597d8846cSMatthew Knepley 376697d8846cSMatthew Knepley PetscFunctionBegin; 3767*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexGetSubpointMap(dm, &spmap)); 3768*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexGetDepth(dm, &depth)); 376997d8846cSMatthew Knepley if (spmap && depth >= 0) { 377097d8846cSMatthew Knepley DM_Plex *mesh = (DM_Plex *) dm->data; 377197d8846cSMatthew Knepley PetscInt *points, *depths; 377297d8846cSMatthew Knepley PetscInt pStart, pEnd, p, off; 377397d8846cSMatthew Knepley 3774*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexGetChart(dm, &pStart, &pEnd)); 37752c71b3e2SJacob Faibussowitsch PetscCheckFalse(pStart,PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Submeshes must start the point numbering at 0, not %d", pStart); 3776*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscMalloc1(pEnd, &points)); 3777*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMGetWorkArray(dm, depth+1, MPIU_INT, &depths)); 377897d8846cSMatthew Knepley depths[0] = depth; 377997d8846cSMatthew Knepley depths[1] = 0; 378097d8846cSMatthew Knepley for (d = 2; d <= depth; ++d) {depths[d] = depth+1 - d;} 378197d8846cSMatthew Knepley for (d = 0, off = 0; d <= depth; ++d) { 378297d8846cSMatthew Knepley const PetscInt dep = depths[d]; 378397d8846cSMatthew Knepley PetscInt depStart, depEnd, n; 378497d8846cSMatthew Knepley 3785*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexGetDepthStratum(dm, dep, &depStart, &depEnd)); 3786*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMLabelGetStratumSize(spmap, dep, &n)); 378797d8846cSMatthew Knepley if (((d < 2) && (depth > 1)) || (d == 1)) { /* Only check vertices and cells for now since the map is broken for others */ 37882c71b3e2SJacob Faibussowitsch PetscCheckFalse(n != depEnd-depStart,PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "The number of mapped submesh points %d at depth %d should be %d", n, dep, depEnd-depStart); 378997d8846cSMatthew Knepley } else { 379097d8846cSMatthew Knepley if (!n) { 379197d8846cSMatthew Knepley if (d == 0) { 379297d8846cSMatthew Knepley /* Missing cells */ 379397d8846cSMatthew Knepley for (p = 0; p < depEnd-depStart; ++p, ++off) points[off] = -1; 379497d8846cSMatthew Knepley } else { 379597d8846cSMatthew Knepley /* Missing faces */ 379697d8846cSMatthew Knepley for (p = 0; p < depEnd-depStart; ++p, ++off) points[off] = PETSC_MAX_INT; 379797d8846cSMatthew Knepley } 379897d8846cSMatthew Knepley } 379997d8846cSMatthew Knepley } 380097d8846cSMatthew Knepley if (n) { 380197d8846cSMatthew Knepley IS is; 380297d8846cSMatthew Knepley const PetscInt *opoints; 380397d8846cSMatthew Knepley 3804*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMLabelGetStratumIS(spmap, dep, &is)); 3805*5f80ce2aSJacob Faibussowitsch CHKERRQ(ISGetIndices(is, &opoints)); 380697d8846cSMatthew Knepley for (p = 0; p < n; ++p, ++off) points[off] = opoints[p]; 3807*5f80ce2aSJacob Faibussowitsch CHKERRQ(ISRestoreIndices(is, &opoints)); 3808*5f80ce2aSJacob Faibussowitsch CHKERRQ(ISDestroy(&is)); 380997d8846cSMatthew Knepley } 381097d8846cSMatthew Knepley } 3811*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMRestoreWorkArray(dm, depth+1, MPIU_INT, &depths)); 38122c71b3e2SJacob Faibussowitsch PetscCheckFalse(off != pEnd,PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "The number of mapped submesh points %d should be %d", off, pEnd); 3813*5f80ce2aSJacob Faibussowitsch CHKERRQ(ISCreateGeneral(PETSC_COMM_SELF, pEnd, points, PETSC_OWN_POINTER, subpointIS)); 3814*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscObjectStateGet((PetscObject) spmap, &mesh->subpointState)); 381597d8846cSMatthew Knepley } 381697d8846cSMatthew Knepley PetscFunctionReturn(0); 381797d8846cSMatthew Knepley } 381897d8846cSMatthew Knepley 381964beef6dSMatthew G. Knepley /*@ 382097d8846cSMatthew Knepley DMPlexGetSubpointIS - Returns an IS covering the entire subdm chart with the original points as data 3821e6ccafaeSMatthew G Knepley 3822e6ccafaeSMatthew G Knepley Input Parameter: 3823e6ccafaeSMatthew G Knepley . dm - The submesh DM 3824e6ccafaeSMatthew G Knepley 3825e6ccafaeSMatthew G Knepley Output Parameter: 38260298fd71SBarry Smith . subpointIS - The IS of all the points from the original mesh in this submesh, or NULL if this is not a submesh 3827e6ccafaeSMatthew G Knepley 38283982b651SMatthew G. Knepley Note: This IS is guaranteed to be sorted by the construction of the submesh 382964beef6dSMatthew G. Knepley 383064beef6dSMatthew G. Knepley Level: developer 383164beef6dSMatthew G. Knepley 383264beef6dSMatthew G. Knepley .seealso: DMPlexCreateSubmesh(), DMPlexGetSubpointMap() 383364beef6dSMatthew G. Knepley @*/ 383497d8846cSMatthew Knepley PetscErrorCode DMPlexGetSubpointIS(DM dm, IS *subpointIS) 3835e6ccafaeSMatthew G Knepley { 383697d8846cSMatthew Knepley DM_Plex *mesh = (DM_Plex *) dm->data; 383797d8846cSMatthew Knepley DMLabel spmap; 383897d8846cSMatthew Knepley PetscObjectState state; 3839e6ccafaeSMatthew G Knepley 3840e6ccafaeSMatthew G Knepley PetscFunctionBegin; 3841e6ccafaeSMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 3842e6ccafaeSMatthew G Knepley PetscValidPointer(subpointIS, 2); 3843*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexGetSubpointMap(dm, &spmap)); 3844*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscObjectStateGet((PetscObject) spmap, &state)); 3845*5f80ce2aSJacob Faibussowitsch if (state != mesh->subpointState || !mesh->subpointIS) CHKERRQ(DMPlexCreateSubpointIS_Internal(dm, &mesh->subpointIS)); 384697d8846cSMatthew Knepley *subpointIS = mesh->subpointIS; 3847e6ccafaeSMatthew G Knepley PetscFunctionReturn(0); 3848e6ccafaeSMatthew G Knepley } 3849559a1558SMatthew G. Knepley 3850559a1558SMatthew G. Knepley /*@ 3851a6e0b375SMatthew G. Knepley DMGetEnclosureRelation - Get the relationship between dmA and dmB 3852559a1558SMatthew G. Knepley 3853559a1558SMatthew G. Knepley Input Parameters: 3854a6e0b375SMatthew G. Knepley + dmA - The first DM 3855a6e0b375SMatthew G. Knepley - dmB - The second DM 3856559a1558SMatthew G. Knepley 3857559a1558SMatthew G. Knepley Output Parameter: 3858a6e0b375SMatthew G. Knepley . rel - The relation of dmA to dmB 3859559a1558SMatthew G. Knepley 3860a6e0b375SMatthew G. Knepley Level: intermediate 3861559a1558SMatthew G. Knepley 3862446c23c1SPierre Jolivet .seealso: DMGetEnclosurePoint() 3863559a1558SMatthew G. Knepley @*/ 3864a6e0b375SMatthew G. Knepley PetscErrorCode DMGetEnclosureRelation(DM dmA, DM dmB, DMEnclosureType *rel) 3865559a1558SMatthew G. Knepley { 3866a6e0b375SMatthew G. Knepley DM plexA, plexB, sdm; 3867559a1558SMatthew G. Knepley DMLabel spmap; 3868a6e0b375SMatthew G. Knepley PetscInt pStartA, pEndA, pStartB, pEndB, NpA, NpB; 3869559a1558SMatthew G. Knepley 387044171101SMatthew G. Knepley PetscFunctionBegin; 3871a6e0b375SMatthew G. Knepley PetscValidPointer(rel, 3); 3872a6e0b375SMatthew G. Knepley *rel = DM_ENC_NONE; 3873a6e0b375SMatthew G. Knepley if (!dmA || !dmB) PetscFunctionReturn(0); 3874a6e0b375SMatthew G. Knepley PetscValidHeaderSpecific(dmA, DM_CLASSID, 1); 3875064a246eSJacob Faibussowitsch PetscValidHeaderSpecific(dmB, DM_CLASSID, 2); 3876a6e0b375SMatthew G. Knepley if (dmA == dmB) {*rel = DM_ENC_EQUALITY; PetscFunctionReturn(0);} 3877*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMConvert(dmA, DMPLEX, &plexA)); 3878*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMConvert(dmB, DMPLEX, &plexB)); 3879*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexGetChart(plexA, &pStartA, &pEndA)); 3880*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexGetChart(plexB, &pStartB, &pEndB)); 3881a6e0b375SMatthew G. Knepley /* Assumption 1: subDMs have smaller charts than the DMs that they originate from 3882a6e0b375SMatthew G. Knepley - The degenerate case of a subdomain which includes all of the domain on some process can be treated as equality */ 3883a6e0b375SMatthew G. Knepley if ((pStartA == pStartB) && (pEndA == pEndB)) { 3884a6e0b375SMatthew G. Knepley *rel = DM_ENC_EQUALITY; 3885a6e0b375SMatthew G. Knepley goto end; 3886559a1558SMatthew G. Knepley } 3887a6e0b375SMatthew G. Knepley NpA = pEndA - pStartA; 3888a6e0b375SMatthew G. Knepley NpB = pEndB - pStartB; 3889a6e0b375SMatthew G. Knepley if (NpA == NpB) goto end; 3890a6e0b375SMatthew G. Knepley sdm = NpA > NpB ? plexB : plexA; /* The other is the original, enclosing dm */ 3891*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexGetSubpointMap(sdm, &spmap)); 3892a6e0b375SMatthew G. Knepley if (!spmap) goto end; 3893a6e0b375SMatthew G. Knepley /* TODO Check the space mapped to by subpointMap is same size as dm */ 3894a6e0b375SMatthew G. Knepley if (NpA > NpB) { 3895a6e0b375SMatthew G. Knepley *rel = DM_ENC_SUPERMESH; 3896a6e0b375SMatthew G. Knepley } else { 3897a6e0b375SMatthew G. Knepley *rel = DM_ENC_SUBMESH; 3898a6e0b375SMatthew G. Knepley } 3899a6e0b375SMatthew G. Knepley end: 3900*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMDestroy(&plexA)); 3901*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMDestroy(&plexB)); 3902559a1558SMatthew G. Knepley PetscFunctionReturn(0); 3903559a1558SMatthew G. Knepley } 390444171101SMatthew G. Knepley 390544171101SMatthew G. Knepley /*@ 3906a6e0b375SMatthew G. Knepley DMGetEnclosurePoint - Get the point pA in dmA which corresponds to the point pB in dmB 390744171101SMatthew G. Knepley 390844171101SMatthew G. Knepley Input Parameters: 3909a6e0b375SMatthew G. Knepley + dmA - The first DM 3910a6e0b375SMatthew G. Knepley . dmB - The second DM 3911a6e0b375SMatthew G. Knepley . etype - The type of enclosure relation that dmA has to dmB 3912a6e0b375SMatthew G. Knepley - pB - A point of dmB 391344171101SMatthew G. Knepley 391444171101SMatthew G. Knepley Output Parameter: 3915a6e0b375SMatthew G. Knepley . pA - The corresponding point of dmA 391644171101SMatthew G. Knepley 3917a6e0b375SMatthew G. Knepley Level: intermediate 391844171101SMatthew G. Knepley 3919a6e0b375SMatthew G. Knepley .seealso: DMGetEnclosureRelation() 392044171101SMatthew G. Knepley @*/ 3921a6e0b375SMatthew G. Knepley PetscErrorCode DMGetEnclosurePoint(DM dmA, DM dmB, DMEnclosureType etype, PetscInt pB, PetscInt *pA) 392244171101SMatthew G. Knepley { 3923a6e0b375SMatthew G. Knepley DM sdm; 3924a6e0b375SMatthew G. Knepley IS subpointIS; 3925a6e0b375SMatthew G. Knepley const PetscInt *subpoints; 3926a6e0b375SMatthew G. Knepley PetscInt numSubpoints; 392744171101SMatthew G. Knepley 392844171101SMatthew G. Knepley PetscFunctionBegin; 3929a6e0b375SMatthew G. Knepley /* TODO Cache the IS, making it look like an index */ 3930a6e0b375SMatthew G. Knepley switch (etype) { 3931a6e0b375SMatthew G. Knepley case DM_ENC_SUPERMESH: 3932a6e0b375SMatthew G. Knepley sdm = dmB; 3933*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexGetSubpointIS(sdm, &subpointIS)); 3934*5f80ce2aSJacob Faibussowitsch CHKERRQ(ISGetIndices(subpointIS, &subpoints)); 3935a6e0b375SMatthew G. Knepley *pA = subpoints[pB]; 3936*5f80ce2aSJacob Faibussowitsch CHKERRQ(ISRestoreIndices(subpointIS, &subpoints)); 3937a6e0b375SMatthew G. Knepley break; 3938a6e0b375SMatthew G. Knepley case DM_ENC_SUBMESH: 3939a6e0b375SMatthew G. Knepley sdm = dmA; 3940*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexGetSubpointIS(sdm, &subpointIS)); 3941*5f80ce2aSJacob Faibussowitsch CHKERRQ(ISGetLocalSize(subpointIS, &numSubpoints)); 3942*5f80ce2aSJacob Faibussowitsch CHKERRQ(ISGetIndices(subpointIS, &subpoints)); 3943*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscFindInt(pB, numSubpoints, subpoints, pA)); 3944a6e0b375SMatthew G. Knepley if (*pA < 0) { 3945*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMViewFromOptions(dmA, NULL, "-dm_enc_A_view")); 3946*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMViewFromOptions(dmB, NULL, "-dm_enc_B_view")); 394798921bdaSJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Point %d not found in submesh", pB); 3948a6e0b375SMatthew G. Knepley } 3949*5f80ce2aSJacob Faibussowitsch CHKERRQ(ISRestoreIndices(subpointIS, &subpoints)); 3950a6e0b375SMatthew G. Knepley break; 3951a6e0b375SMatthew G. Knepley case DM_ENC_EQUALITY: 3952a6e0b375SMatthew G. Knepley case DM_ENC_NONE: 3953a6e0b375SMatthew G. Knepley *pA = pB;break; 3954a6e0b375SMatthew G. Knepley case DM_ENC_UNKNOWN: 3955a6e0b375SMatthew G. Knepley { 3956a6e0b375SMatthew G. Knepley DMEnclosureType enc; 395744171101SMatthew G. Knepley 3958*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMGetEnclosureRelation(dmA, dmB, &enc)); 3959*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMGetEnclosurePoint(dmA, dmB, enc, pB, pA)); 3960a6e0b375SMatthew G. Knepley } 3961a6e0b375SMatthew G. Knepley break; 396298921bdaSJacob Faibussowitsch default: SETERRQ(PetscObjectComm((PetscObject) dmA), PETSC_ERR_ARG_OUTOFRANGE, "Invalid enclosure type %d", (int) etype); 396344171101SMatthew G. Knepley } 396444171101SMatthew G. Knepley PetscFunctionReturn(0); 396544171101SMatthew G. Knepley } 3966