1af0996ceSBarry Smith #include <petsc/private/dmpleximpl.h> /*I "petscdmplex.h" I*/ 2c58f1c22SToby Isaac #include <petsc/private/dmlabelimpl.h> /*I "petscdmlabel.h" I*/ 30c312b8eSJed Brown #include <petscsf.h> 4e6ccafaeSMatthew G Knepley 5d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexCellIsHybrid_Internal(DM dm, PetscInt p, PetscBool *isHybrid) 6d71ae5a4SJacob Faibussowitsch { 7412e9a14SMatthew G. Knepley DMPolytopeType ct; 8412e9a14SMatthew G. Knepley 9412e9a14SMatthew G. Knepley PetscFunctionBegin; 109566063dSJacob Faibussowitsch PetscCall(DMPlexGetCellType(dm, p, &ct)); 11412e9a14SMatthew G. Knepley switch (ct) { 12412e9a14SMatthew G. Knepley case DM_POLYTOPE_POINT_PRISM_TENSOR: 13412e9a14SMatthew G. Knepley case DM_POLYTOPE_SEG_PRISM_TENSOR: 14412e9a14SMatthew G. Knepley case DM_POLYTOPE_TRI_PRISM_TENSOR: 15d71ae5a4SJacob Faibussowitsch case DM_POLYTOPE_QUAD_PRISM_TENSOR: 16d71ae5a4SJacob Faibussowitsch *isHybrid = PETSC_TRUE; 17d71ae5a4SJacob Faibussowitsch break; 18d71ae5a4SJacob Faibussowitsch default: 19d71ae5a4SJacob Faibussowitsch *isHybrid = PETSC_FALSE; 20d71ae5a4SJacob Faibussowitsch break; 21412e9a14SMatthew G. Knepley } 223ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 23412e9a14SMatthew G. Knepley } 24412e9a14SMatthew G. Knepley 25d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexGetTensorPrismBounds_Internal(DM dm, PetscInt dim, PetscInt *cStart, PetscInt *cEnd) 26d71ae5a4SJacob Faibussowitsch { 27412e9a14SMatthew G. Knepley DMLabel ctLabel; 28412e9a14SMatthew G. Knepley 29412e9a14SMatthew G. Knepley PetscFunctionBegin; 30412e9a14SMatthew G. Knepley if (cStart) *cStart = -1; 31412e9a14SMatthew G. Knepley if (cEnd) *cEnd = -1; 329566063dSJacob Faibussowitsch PetscCall(DMPlexGetCellTypeLabel(dm, &ctLabel)); 33412e9a14SMatthew G. Knepley switch (dim) { 34d71ae5a4SJacob Faibussowitsch case 1: 35d71ae5a4SJacob Faibussowitsch PetscCall(DMLabelGetStratumBounds(ctLabel, DM_POLYTOPE_POINT_PRISM_TENSOR, cStart, cEnd)); 36d71ae5a4SJacob Faibussowitsch break; 37d71ae5a4SJacob Faibussowitsch case 2: 38d71ae5a4SJacob Faibussowitsch PetscCall(DMLabelGetStratumBounds(ctLabel, DM_POLYTOPE_SEG_PRISM_TENSOR, cStart, cEnd)); 39d71ae5a4SJacob Faibussowitsch break; 40412e9a14SMatthew G. Knepley case 3: 419566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumBounds(ctLabel, DM_POLYTOPE_TRI_PRISM_TENSOR, cStart, cEnd)); 429566063dSJacob Faibussowitsch if (*cStart < 0) PetscCall(DMLabelGetStratumBounds(ctLabel, DM_POLYTOPE_QUAD_PRISM_TENSOR, cStart, cEnd)); 43412e9a14SMatthew G. Knepley break; 44d71ae5a4SJacob Faibussowitsch default: 453ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 46412e9a14SMatthew G. Knepley } 473ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 48412e9a14SMatthew G. Knepley } 49412e9a14SMatthew G. Knepley 5069941377SStefano Zampini PetscErrorCode DMPlexMarkBoundaryFaces_Internal(DM dm, PetscInt val, PetscInt cellHeight, DMLabel label, PetscBool missing_only) 51d71ae5a4SJacob Faibussowitsch { 5269941377SStefano Zampini PetscInt depth, pStart, pEnd, fStart, fEnd, f, supportSize, nroots = -1, nleaves = -1, defval; 53429fa399SMatthew G. Knepley PetscSF sf; 5441e3e744Sksagiyam const PetscSFNode *iremote = NULL; 5541e3e744Sksagiyam const PetscInt *ilocal = NULL; 5641e3e744Sksagiyam PetscInt *leafData; 5730560a7bSMatthew G. Knepley 5830560a7bSMatthew G. Knepley PetscFunctionBegin; 5941e3e744Sksagiyam PetscCall(DMPlexGetChart(dm, &pStart, &pEnd)); 6041e3e744Sksagiyam PetscCall(DMPlexGetDepth(dm, &depth)); 6141e3e744Sksagiyam if (depth >= cellHeight + 1) { 629566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(dm, cellHeight + 1, &fStart, &fEnd)); 6341e3e744Sksagiyam } else { 6441e3e744Sksagiyam /* Note DMPlexGetHeightStratum() returns fStart, fEnd = pStart, pEnd */ 6541e3e744Sksagiyam /* if height > depth, which is not what we want here. */ 6641e3e744Sksagiyam fStart = 0; 6741e3e744Sksagiyam fEnd = 0; 6841e3e744Sksagiyam } 6969941377SStefano Zampini PetscCall(DMLabelGetDefaultValue(label, &defval)); 7041e3e744Sksagiyam PetscCall(PetscCalloc1(pEnd - pStart, &leafData)); 7141e3e744Sksagiyam leafData -= pStart; 7241e3e744Sksagiyam PetscCall(DMGetPointSF(dm, &sf)); 7341e3e744Sksagiyam if (sf) PetscCall(PetscSFGetGraph(sf, &nroots, &nleaves, &ilocal, &iremote)); 7441e3e744Sksagiyam if (sf && nroots >= 0) { 7541e3e744Sksagiyam PetscInt cStart, cEnd, c, i; 7641e3e744Sksagiyam PetscInt *rootData, *rootData1, *cellOwners, hasTwoSupportCells = -2; 7741e3e744Sksagiyam const PetscInt *support; 7841e3e744Sksagiyam PetscMPIInt rank; 7930560a7bSMatthew G. Knepley 8041e3e744Sksagiyam PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)dm), &rank)); 8141e3e744Sksagiyam PetscCall(DMPlexGetHeightStratum(dm, cellHeight, &cStart, &cEnd)); 8241e3e744Sksagiyam PetscCall(PetscCalloc3(pEnd - pStart, &rootData, pEnd - pStart, &rootData1, cEnd - cStart, &cellOwners)); 8341e3e744Sksagiyam rootData -= pStart; 8441e3e744Sksagiyam rootData1 -= pStart; 8541e3e744Sksagiyam for (c = cStart; c < cEnd; ++c) cellOwners[c - cStart] = (PetscInt)rank; 8641e3e744Sksagiyam for (i = 0; i < nleaves; ++i) { 8741e3e744Sksagiyam c = ilocal ? ilocal[i] : i; 8841e3e744Sksagiyam if (c >= cStart && c < cEnd) cellOwners[c - cStart] = iremote[i].rank; 8941e3e744Sksagiyam } 9041e3e744Sksagiyam for (f = fStart; f < fEnd; ++f) { 919566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dm, f, &supportSize)); 92e752be1aSMatthew G. Knepley if (supportSize == 1) { 9341e3e744Sksagiyam PetscCall(DMPlexGetSupport(dm, f, &support)); 9441e3e744Sksagiyam leafData[f] = cellOwners[support[0] - cStart]; 9541e3e744Sksagiyam } else { 9641e3e744Sksagiyam /* TODO: When using DMForest, we could have a parent facet (a coarse facet) */ 9741e3e744Sksagiyam /* supportSize of which alone does not tell us if it is an interior */ 9841e3e744Sksagiyam /* facet or an exterior facet. Those facets can be identified by checking */ 9941e3e744Sksagiyam /* if they are in the parent tree. We should probably skip those parent */ 10041e3e744Sksagiyam /* facets here, which will allow for including the following check, and */ 10141e3e744Sksagiyam /* see if they are exterior facets or not afterwards by checking if the */ 10241e3e744Sksagiyam /* children are exterior or not. */ 10341e3e744Sksagiyam /* PetscCheck(supportSize == 2, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid facet support size (%" PetscInt_FMT ") on facet (%" PetscInt_FMT ")", supportSize, f); */ 10441e3e744Sksagiyam leafData[f] = hasTwoSupportCells; /* some negative PetscInt */ 105429fa399SMatthew G. Knepley } 10641e3e744Sksagiyam rootData[f] = leafData[f]; 10741e3e744Sksagiyam rootData1[f] = leafData[f]; 10841e3e744Sksagiyam } 10941e3e744Sksagiyam PetscCall(PetscSFReduceBegin(sf, MPIU_INT, leafData, rootData, MPI_MIN)); 11041e3e744Sksagiyam PetscCall(PetscSFReduceBegin(sf, MPIU_INT, leafData, rootData1, MPI_MAX)); 11141e3e744Sksagiyam PetscCall(PetscSFReduceEnd(sf, MPIU_INT, leafData, rootData, MPI_MIN)); 11241e3e744Sksagiyam PetscCall(PetscSFReduceEnd(sf, MPIU_INT, leafData, rootData1, MPI_MAX)); 11341e3e744Sksagiyam for (f = fStart; f < fEnd; ++f) { 11441e3e744Sksagiyam /* Store global support size of f. */ 11541e3e744Sksagiyam /* Facet f is an interior facet if and only if one of the following two is satisfied: */ 11641e3e744Sksagiyam /* 1. supportSize is 2 on some rank. */ 11741e3e744Sksagiyam /* 2. supportSize is 1 on any rank that can see f, but f is on a partition boundary; */ 11841e3e744Sksagiyam /* i.e., rootData[f] < rootData1[f]. */ 11941e3e744Sksagiyam rootData[f] = (rootData[f] == hasTwoSupportCells || (rootData[f] < rootData1[f])) ? 2 : 1; 12041e3e744Sksagiyam leafData[f] = rootData[f]; 12141e3e744Sksagiyam } 12241e3e744Sksagiyam PetscCall(PetscSFBcastBegin(sf, MPIU_INT, rootData, leafData, MPI_REPLACE)); 12341e3e744Sksagiyam PetscCall(PetscSFBcastEnd(sf, MPIU_INT, rootData, leafData, MPI_REPLACE)); 12441e3e744Sksagiyam rootData += pStart; 12541e3e744Sksagiyam rootData1 += pStart; 12641e3e744Sksagiyam PetscCall(PetscFree3(rootData, rootData1, cellOwners)); 12741e3e744Sksagiyam } else { 12841e3e744Sksagiyam for (f = fStart; f < fEnd; ++f) { 12941e3e744Sksagiyam PetscCall(DMPlexGetSupportSize(dm, f, &supportSize)); 13041e3e744Sksagiyam leafData[f] = supportSize; 13141e3e744Sksagiyam } 13241e3e744Sksagiyam } 13341e3e744Sksagiyam for (f = fStart; f < fEnd; ++f) { 13441e3e744Sksagiyam if (leafData[f] == 1) { 135e752be1aSMatthew G. Knepley if (val < 0) { 136e752be1aSMatthew G. Knepley PetscInt *closure = NULL; 137e752be1aSMatthew G. Knepley PetscInt clSize, cl, cval; 138e752be1aSMatthew G. Knepley 13969941377SStefano Zampini PetscAssert(!missing_only, PETSC_COMM_SELF, PETSC_ERR_SUP, "Not implemented"); 1409566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(dm, f, PETSC_TRUE, &clSize, &closure)); 141e752be1aSMatthew G. Knepley for (cl = 0; cl < clSize * 2; cl += 2) { 1429566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, closure[cl], &cval)); 143e752be1aSMatthew G. Knepley if (cval < 0) continue; 1449566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(label, f, cval)); 145e752be1aSMatthew G. Knepley break; 146e752be1aSMatthew G. Knepley } 1479566063dSJacob Faibussowitsch if (cl == clSize * 2) PetscCall(DMLabelSetValue(label, f, 1)); 1489566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dm, f, PETSC_TRUE, &clSize, &closure)); 149e752be1aSMatthew G. Knepley } else { 15069941377SStefano Zampini if (missing_only) { 15169941377SStefano Zampini PetscInt fval; 15269941377SStefano Zampini PetscCall(DMLabelGetValue(label, f, &fval)); 15369941377SStefano Zampini if (fval != defval) PetscCall(DMLabelClearValue(label, f, fval)); 15469941377SStefano Zampini else PetscCall(DMLabelSetValue(label, f, val)); 15569941377SStefano Zampini } else { 1569566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(label, f, val)); 157e752be1aSMatthew G. Knepley } 15869941377SStefano Zampini } 15941e3e744Sksagiyam } else { 16041e3e744Sksagiyam /* TODO: See the above comment on DMForest */ 16141e3e744Sksagiyam /* PetscCheck(leafData[f] == 2, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid facet support size (%" PetscInt_FMT ") on facet (%" PetscInt_FMT ")", leafData[f], f); */ 162e752be1aSMatthew G. Knepley } 16330560a7bSMatthew G. Knepley } 16441e3e744Sksagiyam leafData += pStart; 16541e3e744Sksagiyam PetscCall(PetscFree(leafData)); 1663ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 16730560a7bSMatthew G. Knepley } 16830560a7bSMatthew G. Knepley 169cd0c2139SMatthew G Knepley /*@ 170cd0c2139SMatthew G Knepley DMPlexMarkBoundaryFaces - Mark all faces on the boundary 171cd0c2139SMatthew G Knepley 17241e3e744Sksagiyam Collective 173cd0c2139SMatthew G Knepley 174d8d19677SJose E. Roman Input Parameters: 175429fa399SMatthew G. Knepley + dm - The original `DM` 17620f4b53cSBarry Smith - val - The marker value, or `PETSC_DETERMINE` to use some value in the closure (or 1 if none are found) 177cd0c2139SMatthew G Knepley 178cd0c2139SMatthew G Knepley Output Parameter: 17920f4b53cSBarry Smith . label - The `DMLabel` marking boundary faces with the given value 180429fa399SMatthew G. Knepley 181cd0c2139SMatthew G Knepley Level: developer 182cd0c2139SMatthew G Knepley 18320f4b53cSBarry Smith Note: 18441e3e744Sksagiyam This function will use the point `PetscSF` from the input `DM` and the ownership of the support cells to exclude points on the partition boundary from being marked. If you also wish to mark the partition boundary, you can use `DMSetPointSF()` to temporarily set it to `NULL`, and then reset it to the original object after the call. 18541e3e744Sksagiyam 18641e3e744Sksagiyam In DMForest there can be facets support sizes of which alone can not determine whether they are on the boundary. Currently, this function is not guaranteed to produce the correct result in such case. 18720f4b53cSBarry Smith 1881cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMLabelCreate()`, `DMCreateLabel()` 18909f723d9SJed Brown @*/ 190d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexMarkBoundaryFaces(DM dm, PetscInt val, DMLabel label) 191d71ae5a4SJacob Faibussowitsch { 192827c4036SVaclav Hapla DMPlexInterpolatedFlag flg; 193cd0c2139SMatthew G Knepley 194cd0c2139SMatthew G Knepley PetscFunctionBegin; 195827c4036SVaclav Hapla PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 1969566063dSJacob Faibussowitsch PetscCall(DMPlexIsInterpolated(dm, &flg)); 19708401ef6SPierre Jolivet PetscCheck(flg == DMPLEX_INTERPOLATED_FULL, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "DM is not fully interpolated on this rank"); 19869941377SStefano Zampini PetscCall(DMPlexMarkBoundaryFaces_Internal(dm, val, 0, label, PETSC_FALSE)); 1993ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 200cd0c2139SMatthew G Knepley } 201cd0c2139SMatthew G Knepley 202d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexLabelComplete_Internal(DM dm, DMLabel label, PetscBool completeCells) 203d71ae5a4SJacob Faibussowitsch { 204b0bf5782SToby Isaac IS valueIS; 205ac51f24eSSander Arens PetscSF sfPoint; 206b0bf5782SToby Isaac const PetscInt *values; 207ac51f24eSSander Arens PetscInt numValues, v, cStart, cEnd, nroots; 208b0bf5782SToby Isaac 209b0bf5782SToby Isaac PetscFunctionBegin; 2109566063dSJacob Faibussowitsch PetscCall(DMLabelGetNumValues(label, &numValues)); 2119566063dSJacob Faibussowitsch PetscCall(DMLabelGetValueIS(label, &valueIS)); 2129566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(dm, 0, &cStart, &cEnd)); 2139566063dSJacob Faibussowitsch PetscCall(ISGetIndices(valueIS, &values)); 214b0bf5782SToby Isaac for (v = 0; v < numValues; ++v) { 215b0bf5782SToby Isaac IS pointIS; 216b0bf5782SToby Isaac const PetscInt *points; 217b0bf5782SToby Isaac PetscInt numPoints, p; 218b0bf5782SToby Isaac 2199566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumSize(label, values[v], &numPoints)); 2209566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(label, values[v], &pointIS)); 2219566063dSJacob Faibussowitsch PetscCall(ISGetIndices(pointIS, &points)); 222b0bf5782SToby Isaac for (p = 0; p < numPoints; ++p) { 223b0bf5782SToby Isaac PetscInt q = points[p]; 224b0bf5782SToby Isaac PetscInt *closure = NULL; 225b0bf5782SToby Isaac PetscInt closureSize, c; 226b0bf5782SToby Isaac 227b0bf5782SToby Isaac if (cStart <= q && q < cEnd && !completeCells) { /* skip cells */ 228b0bf5782SToby Isaac continue; 229b0bf5782SToby Isaac } 2309566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(dm, q, PETSC_TRUE, &closureSize, &closure)); 23148a46eb9SPierre Jolivet for (c = 0; c < closureSize * 2; c += 2) PetscCall(DMLabelSetValue(label, closure[c], values[v])); 2329566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dm, q, PETSC_TRUE, &closureSize, &closure)); 233b0bf5782SToby Isaac } 2349566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(pointIS, &points)); 2359566063dSJacob Faibussowitsch PetscCall(ISDestroy(&pointIS)); 236b0bf5782SToby Isaac } 2379566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(valueIS, &values)); 2389566063dSJacob Faibussowitsch PetscCall(ISDestroy(&valueIS)); 2399566063dSJacob Faibussowitsch PetscCall(DMGetPointSF(dm, &sfPoint)); 2409566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(sfPoint, &nroots, NULL, NULL, NULL)); 241ac51f24eSSander Arens if (nroots >= 0) { 24226279d81SSanderA DMLabel lblRoots, lblLeaves; 24326279d81SSanderA IS valueIS, pointIS; 24426279d81SSanderA const PetscInt *values; 24526279d81SSanderA PetscInt numValues, v; 24626279d81SSanderA 24726279d81SSanderA /* Pull point contributions from remote leaves into local roots */ 2489566063dSJacob Faibussowitsch PetscCall(DMLabelGather(label, sfPoint, &lblLeaves)); 2499566063dSJacob Faibussowitsch PetscCall(DMLabelGetValueIS(lblLeaves, &valueIS)); 2509566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(valueIS, &numValues)); 2519566063dSJacob Faibussowitsch PetscCall(ISGetIndices(valueIS, &values)); 25226279d81SSanderA for (v = 0; v < numValues; ++v) { 25326279d81SSanderA const PetscInt value = values[v]; 25426279d81SSanderA 2559566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(lblLeaves, value, &pointIS)); 2569566063dSJacob Faibussowitsch PetscCall(DMLabelInsertIS(label, pointIS, value)); 2579566063dSJacob Faibussowitsch PetscCall(ISDestroy(&pointIS)); 25826279d81SSanderA } 2599566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(valueIS, &values)); 2609566063dSJacob Faibussowitsch PetscCall(ISDestroy(&valueIS)); 2619566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&lblLeaves)); 26226279d81SSanderA /* Push point contributions from roots into remote leaves */ 2639566063dSJacob Faibussowitsch PetscCall(DMLabelDistribute(label, sfPoint, &lblRoots)); 2649566063dSJacob Faibussowitsch PetscCall(DMLabelGetValueIS(lblRoots, &valueIS)); 2659566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(valueIS, &numValues)); 2669566063dSJacob Faibussowitsch PetscCall(ISGetIndices(valueIS, &values)); 26726279d81SSanderA for (v = 0; v < numValues; ++v) { 26826279d81SSanderA const PetscInt value = values[v]; 26926279d81SSanderA 2709566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(lblRoots, value, &pointIS)); 2719566063dSJacob Faibussowitsch PetscCall(DMLabelInsertIS(label, pointIS, value)); 2729566063dSJacob Faibussowitsch PetscCall(ISDestroy(&pointIS)); 27326279d81SSanderA } 2749566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(valueIS, &values)); 2759566063dSJacob Faibussowitsch PetscCall(ISDestroy(&valueIS)); 2769566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&lblRoots)); 27726279d81SSanderA } 2783ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 279b0bf5782SToby Isaac } 280b0bf5782SToby Isaac 2812be2b188SMatthew G Knepley /*@ 2822be2b188SMatthew G Knepley DMPlexLabelComplete - Starting with a label marking points on a surface, we add the transitive closure to the surface 2832be2b188SMatthew G Knepley 2842be2b188SMatthew G Knepley Input Parameters: 28520f4b53cSBarry Smith + dm - The `DM` 28620f4b53cSBarry Smith - label - A `DMLabel` marking the surface points 2872be2b188SMatthew G Knepley 2882be2b188SMatthew G Knepley Output Parameter: 28920f4b53cSBarry Smith . label - A `DMLabel` marking all surface points in the transitive closure 2902be2b188SMatthew G Knepley 2912be2b188SMatthew G Knepley Level: developer 2922be2b188SMatthew G Knepley 2931cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexLabelCohesiveComplete()` 2942be2b188SMatthew G Knepley @*/ 295d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexLabelComplete(DM dm, DMLabel label) 296d71ae5a4SJacob Faibussowitsch { 2972be2b188SMatthew G Knepley PetscFunctionBegin; 2989566063dSJacob Faibussowitsch PetscCall(DMPlexLabelComplete_Internal(dm, label, PETSC_TRUE)); 2993ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3002be2b188SMatthew G Knepley } 3012be2b188SMatthew G Knepley 3026cf0e42fSMatthew G. Knepley /*@ 303a6e0b375SMatthew G. Knepley DMPlexLabelAddCells - Starting with a label marking points on a surface, we add a cell for each point 3046cf0e42fSMatthew G. Knepley 3056cf0e42fSMatthew G. Knepley Input Parameters: 30620f4b53cSBarry Smith + dm - The `DM` 30720f4b53cSBarry Smith - label - A `DMLabel` marking the surface points 3086cf0e42fSMatthew G. Knepley 3096cf0e42fSMatthew G. Knepley Output Parameter: 31020f4b53cSBarry Smith . label - A `DMLabel` incorporating cells 3116cf0e42fSMatthew G. Knepley 3126cf0e42fSMatthew G. Knepley Level: developer 3136cf0e42fSMatthew G. Knepley 31420f4b53cSBarry Smith Note: 31520f4b53cSBarry Smith The cells allow FEM boundary conditions to be applied using the cell geometry 3166cf0e42fSMatthew G. Knepley 3171cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexLabelAddFaceCells()`, `DMPlexLabelComplete()`, `DMPlexLabelCohesiveComplete()` 3186cf0e42fSMatthew G. Knepley @*/ 319d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexLabelAddCells(DM dm, DMLabel label) 320d71ae5a4SJacob Faibussowitsch { 3216cf0e42fSMatthew G. Knepley IS valueIS; 3226cf0e42fSMatthew G. Knepley const PetscInt *values; 3239df54392SMatthew G. Knepley PetscInt numValues, v, csStart, csEnd, chStart, chEnd; 3246cf0e42fSMatthew G. Knepley 3256cf0e42fSMatthew G. Knepley PetscFunctionBegin; 3269df54392SMatthew G. Knepley PetscCall(DMPlexGetSimplexOrBoxCells(dm, 0, &csStart, &csEnd)); 3279df54392SMatthew G. Knepley PetscCall(DMPlexGetHeightStratum(dm, 0, &chStart, &chEnd)); 3289566063dSJacob Faibussowitsch PetscCall(DMLabelGetNumValues(label, &numValues)); 3299566063dSJacob Faibussowitsch PetscCall(DMLabelGetValueIS(label, &valueIS)); 3309566063dSJacob Faibussowitsch PetscCall(ISGetIndices(valueIS, &values)); 3316cf0e42fSMatthew G. Knepley for (v = 0; v < numValues; ++v) { 3326cf0e42fSMatthew G. Knepley IS pointIS; 3336cf0e42fSMatthew G. Knepley const PetscInt *points; 3346cf0e42fSMatthew G. Knepley PetscInt numPoints, p; 3356cf0e42fSMatthew G. Knepley 3369566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumSize(label, values[v], &numPoints)); 3379566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(label, values[v], &pointIS)); 3389566063dSJacob Faibussowitsch PetscCall(ISGetIndices(pointIS, &points)); 3396cf0e42fSMatthew G. Knepley for (p = 0; p < numPoints; ++p) { 3409df54392SMatthew G. Knepley const PetscInt point = points[p]; 3416cf0e42fSMatthew G. Knepley PetscInt *closure = NULL; 342*7bd9760aSJed Brown PetscInt closureSize, cl, h, cStart, cEnd; 343*7bd9760aSJed Brown DMPolytopeType ct; 3449df54392SMatthew G. Knepley 3459df54392SMatthew G. Knepley // If the point is a hybrid, allow hybrid cells 346*7bd9760aSJed Brown PetscCall(DMPlexGetCellType(dm, point, &ct)); 3479df54392SMatthew G. Knepley PetscCall(DMPlexGetPointHeight(dm, point, &h)); 348*7bd9760aSJed Brown if (DMPolytopeTypeIsHybrid(ct)) { 3499df54392SMatthew G. Knepley cStart = chStart; 3509df54392SMatthew G. Knepley cEnd = chEnd; 351*7bd9760aSJed Brown } else { 352*7bd9760aSJed Brown cStart = csStart; 353*7bd9760aSJed Brown cEnd = csEnd; 3549df54392SMatthew G. Knepley } 3556cf0e42fSMatthew G. Knepley 3569566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(dm, points[p], PETSC_FALSE, &closureSize, &closure)); 35722eabd52SMatthew G. Knepley for (cl = closureSize - 1; cl > 0; --cl) { 358a6e0b375SMatthew G. Knepley const PetscInt cell = closure[cl * 2]; 3599371c9d4SSatish Balay if ((cell >= cStart) && (cell < cEnd)) { 3609371c9d4SSatish Balay PetscCall(DMLabelSetValue(label, cell, values[v])); 3619371c9d4SSatish Balay break; 3629371c9d4SSatish Balay } 36322eabd52SMatthew G. Knepley } 3649566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dm, points[p], PETSC_FALSE, &closureSize, &closure)); 3656cf0e42fSMatthew G. Knepley } 3669566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(pointIS, &points)); 3679566063dSJacob Faibussowitsch PetscCall(ISDestroy(&pointIS)); 3686cf0e42fSMatthew G. Knepley } 3699566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(valueIS, &values)); 3709566063dSJacob Faibussowitsch PetscCall(ISDestroy(&valueIS)); 3713ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3726cf0e42fSMatthew G. Knepley } 3736cf0e42fSMatthew G. Knepley 374f402d5e4SToby Isaac /*@ 375a6e0b375SMatthew G. Knepley DMPlexLabelAddFaceCells - Starting with a label marking faces on a surface, we add a cell for each face 376a6e0b375SMatthew G. Knepley 377a6e0b375SMatthew G. Knepley Input Parameters: 37820f4b53cSBarry Smith + dm - The `DM` 37920f4b53cSBarry Smith - label - A `DMLabel` marking the surface points 380a6e0b375SMatthew G. Knepley 381a6e0b375SMatthew G. Knepley Output Parameter: 38220f4b53cSBarry Smith . label - A `DMLabel` incorporating cells 383a6e0b375SMatthew G. Knepley 384a6e0b375SMatthew G. Knepley Level: developer 385a6e0b375SMatthew G. Knepley 38620f4b53cSBarry Smith Note: 38720f4b53cSBarry Smith The cells allow FEM boundary conditions to be applied using the cell geometry 388a6e0b375SMatthew G. Knepley 3891cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexLabelAddCells()`, `DMPlexLabelComplete()`, `DMPlexLabelCohesiveComplete()` 390a6e0b375SMatthew G. Knepley @*/ 391d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexLabelAddFaceCells(DM dm, DMLabel label) 392d71ae5a4SJacob Faibussowitsch { 393a6e0b375SMatthew G. Knepley IS valueIS; 394a6e0b375SMatthew G. Knepley const PetscInt *values; 395a6e0b375SMatthew G. Knepley PetscInt numValues, v, cStart, cEnd, fStart, fEnd; 396a6e0b375SMatthew G. Knepley 397a6e0b375SMatthew G. Knepley PetscFunctionBegin; 3989566063dSJacob Faibussowitsch PetscCall(DMPlexGetSimplexOrBoxCells(dm, 0, &cStart, &cEnd)); 3999566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(dm, 1, &fStart, &fEnd)); 4009566063dSJacob Faibussowitsch PetscCall(DMLabelGetNumValues(label, &numValues)); 4019566063dSJacob Faibussowitsch PetscCall(DMLabelGetValueIS(label, &valueIS)); 4029566063dSJacob Faibussowitsch PetscCall(ISGetIndices(valueIS, &values)); 403a6e0b375SMatthew G. Knepley for (v = 0; v < numValues; ++v) { 404a6e0b375SMatthew G. Knepley IS pointIS; 405a6e0b375SMatthew G. Knepley const PetscInt *points; 406a6e0b375SMatthew G. Knepley PetscInt numPoints, p; 407a6e0b375SMatthew G. Knepley 4089566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumSize(label, values[v], &numPoints)); 4099566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(label, values[v], &pointIS)); 4109566063dSJacob Faibussowitsch PetscCall(ISGetIndices(pointIS, &points)); 411a6e0b375SMatthew G. Knepley for (p = 0; p < numPoints; ++p) { 412a6e0b375SMatthew G. Knepley const PetscInt face = points[p]; 413a6e0b375SMatthew G. Knepley PetscInt *closure = NULL; 414a6e0b375SMatthew G. Knepley PetscInt closureSize, cl; 415a6e0b375SMatthew G. Knepley 416a6e0b375SMatthew G. Knepley if ((face < fStart) || (face >= fEnd)) continue; 4179566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(dm, face, PETSC_FALSE, &closureSize, &closure)); 418a6e0b375SMatthew G. Knepley for (cl = closureSize - 1; cl > 0; --cl) { 419a6e0b375SMatthew G. Knepley const PetscInt cell = closure[cl * 2]; 4209371c9d4SSatish Balay if ((cell >= cStart) && (cell < cEnd)) { 4219371c9d4SSatish Balay PetscCall(DMLabelSetValue(label, cell, values[v])); 4229371c9d4SSatish Balay break; 4239371c9d4SSatish Balay } 424a6e0b375SMatthew G. Knepley } 4259566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dm, face, PETSC_FALSE, &closureSize, &closure)); 426a6e0b375SMatthew G. Knepley } 4279566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(pointIS, &points)); 4289566063dSJacob Faibussowitsch PetscCall(ISDestroy(&pointIS)); 429a6e0b375SMatthew G. Knepley } 4309566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(valueIS, &values)); 4319566063dSJacob Faibussowitsch PetscCall(ISDestroy(&valueIS)); 4323ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 433a6e0b375SMatthew G. Knepley } 434a6e0b375SMatthew G. Knepley 435a6e0b375SMatthew G. Knepley /*@ 436f402d5e4SToby Isaac DMPlexLabelClearCells - Remove cells from a label 437f402d5e4SToby Isaac 438f402d5e4SToby Isaac Input Parameters: 43920f4b53cSBarry Smith + dm - The `DM` 44020f4b53cSBarry Smith - label - A `DMLabel` marking surface points and their adjacent cells 441f402d5e4SToby Isaac 442f402d5e4SToby Isaac Output Parameter: 44320f4b53cSBarry Smith . label - A `DMLabel` without cells 444f402d5e4SToby Isaac 445f402d5e4SToby Isaac Level: developer 446f402d5e4SToby Isaac 44720f4b53cSBarry Smith Note: 44820f4b53cSBarry Smith This undoes `DMPlexLabelAddCells()` or `DMPlexLabelAddFaceCells()` 449f402d5e4SToby Isaac 4501cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexLabelComplete()`, `DMPlexLabelCohesiveComplete()`, `DMPlexLabelAddCells()` 451f402d5e4SToby Isaac @*/ 452d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexLabelClearCells(DM dm, DMLabel label) 453d71ae5a4SJacob Faibussowitsch { 454f402d5e4SToby Isaac IS valueIS; 455f402d5e4SToby Isaac const PetscInt *values; 456485ad865SMatthew G. Knepley PetscInt numValues, v, cStart, cEnd; 457f402d5e4SToby Isaac 458f402d5e4SToby Isaac PetscFunctionBegin; 4599566063dSJacob Faibussowitsch PetscCall(DMPlexGetSimplexOrBoxCells(dm, 0, &cStart, &cEnd)); 4609566063dSJacob Faibussowitsch PetscCall(DMLabelGetNumValues(label, &numValues)); 4619566063dSJacob Faibussowitsch PetscCall(DMLabelGetValueIS(label, &valueIS)); 4629566063dSJacob Faibussowitsch PetscCall(ISGetIndices(valueIS, &values)); 463f402d5e4SToby Isaac for (v = 0; v < numValues; ++v) { 464f402d5e4SToby Isaac IS pointIS; 465f402d5e4SToby Isaac const PetscInt *points; 466f402d5e4SToby Isaac PetscInt numPoints, p; 467f402d5e4SToby Isaac 4689566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumSize(label, values[v], &numPoints)); 4699566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(label, values[v], &pointIS)); 4709566063dSJacob Faibussowitsch PetscCall(ISGetIndices(pointIS, &points)); 471f402d5e4SToby Isaac for (p = 0; p < numPoints; ++p) { 472f402d5e4SToby Isaac PetscInt point = points[p]; 473f402d5e4SToby Isaac 47448a46eb9SPierre Jolivet if (point >= cStart && point < cEnd) PetscCall(DMLabelClearValue(label, point, values[v])); 475f402d5e4SToby Isaac } 4769566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(pointIS, &points)); 4779566063dSJacob Faibussowitsch PetscCall(ISDestroy(&pointIS)); 478f402d5e4SToby Isaac } 4799566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(valueIS, &values)); 4809566063dSJacob Faibussowitsch PetscCall(ISDestroy(&valueIS)); 4813ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 482f402d5e4SToby Isaac } 483f402d5e4SToby Isaac 48459eef20bSToby Isaac /* take (oldEnd, added) pairs, ordered by height and convert them to (oldstart, newstart) pairs, ordered by ascending 48559eef20bSToby Isaac * index (skipping first, which is (0,0)) */ 486d71ae5a4SJacob Faibussowitsch static inline PetscErrorCode DMPlexShiftPointSetUp_Internal(PetscInt depth, PetscInt depthShift[]) 487d71ae5a4SJacob Faibussowitsch { 4882582d50cSToby Isaac PetscInt d, off = 0; 4892582d50cSToby Isaac 4902582d50cSToby Isaac PetscFunctionBegin; 49159eef20bSToby Isaac /* sort by (oldend): yes this is an O(n^2) sort, we expect depth <= 3 */ 4920974a383SToby Isaac for (d = 0; d < depth; d++) { 4932582d50cSToby Isaac PetscInt firstd = d; 4940974a383SToby Isaac PetscInt firstStart = depthShift[2 * d]; 4952582d50cSToby Isaac PetscInt e; 4962582d50cSToby Isaac 4972582d50cSToby Isaac for (e = d + 1; e <= depth; e++) { 4982582d50cSToby Isaac if (depthShift[2 * e] < firstStart) { 4992582d50cSToby Isaac firstd = e; 5002582d50cSToby Isaac firstStart = depthShift[2 * d]; 5012582d50cSToby Isaac } 5022582d50cSToby Isaac } 5032582d50cSToby Isaac if (firstd != d) { 5042582d50cSToby Isaac PetscInt swap[2]; 5052582d50cSToby Isaac 5062582d50cSToby Isaac e = firstd; 5072582d50cSToby Isaac swap[0] = depthShift[2 * d]; 5082582d50cSToby Isaac swap[1] = depthShift[2 * d + 1]; 5092582d50cSToby Isaac depthShift[2 * d] = depthShift[2 * e]; 5102582d50cSToby Isaac depthShift[2 * d + 1] = depthShift[2 * e + 1]; 5112582d50cSToby Isaac depthShift[2 * e] = swap[0]; 5122582d50cSToby Isaac depthShift[2 * e + 1] = swap[1]; 5132582d50cSToby Isaac } 5142582d50cSToby Isaac } 5152582d50cSToby Isaac /* convert (oldstart, added) to (oldstart, newstart) */ 5160974a383SToby Isaac for (d = 0; d <= depth; d++) { 5172582d50cSToby Isaac off += depthShift[2 * d + 1]; 51859eef20bSToby Isaac depthShift[2 * d + 1] = depthShift[2 * d] + off; 5192582d50cSToby Isaac } 5203ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5212582d50cSToby Isaac } 5222582d50cSToby Isaac 5232582d50cSToby Isaac /* depthShift is a list of (old, new) pairs */ 524d71ae5a4SJacob Faibussowitsch static inline PetscInt DMPlexShiftPoint_Internal(PetscInt p, PetscInt depth, PetscInt depthShift[]) 525d71ae5a4SJacob Faibussowitsch { 5262582d50cSToby Isaac PetscInt d; 5272582d50cSToby Isaac PetscInt newOff = 0; 5282582d50cSToby Isaac 5292582d50cSToby Isaac for (d = 0; d <= depth; d++) { 5302582d50cSToby Isaac if (p < depthShift[2 * d]) return p + newOff; 5312582d50cSToby Isaac else newOff = depthShift[2 * d + 1] - depthShift[2 * d]; 5322582d50cSToby Isaac } 5330974a383SToby Isaac return p + newOff; 5342582d50cSToby Isaac } 5352582d50cSToby Isaac 5362582d50cSToby Isaac /* depthShift is a list of (old, new) pairs */ 537d71ae5a4SJacob Faibussowitsch static inline PetscInt DMPlexShiftPointInverse_Internal(PetscInt p, PetscInt depth, PetscInt depthShift[]) 538d71ae5a4SJacob Faibussowitsch { 5392582d50cSToby Isaac PetscInt d; 5402582d50cSToby Isaac PetscInt newOff = 0; 5412582d50cSToby Isaac 5422582d50cSToby Isaac for (d = 0; d <= depth; d++) { 5432582d50cSToby Isaac if (p < depthShift[2 * d + 1]) return p + newOff; 5442582d50cSToby Isaac else newOff = depthShift[2 * d] - depthShift[2 * d + 1]; 5452582d50cSToby Isaac } 5460974a383SToby Isaac return p + newOff; 547cd0c2139SMatthew G Knepley } 548cd0c2139SMatthew G Knepley 549d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexShiftSizes_Internal(DM dm, PetscInt depthShift[], DM dmNew) 550d71ae5a4SJacob Faibussowitsch { 551cd0c2139SMatthew G Knepley PetscInt depth = 0, d, pStart, pEnd, p; 552fa8e8ae5SToby Isaac DMLabel depthLabel; 553cd0c2139SMatthew G Knepley 554cd0c2139SMatthew G Knepley PetscFunctionBegin; 5559566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepth(dm, &depth)); 5563ba16761SJacob Faibussowitsch if (depth < 0) PetscFunctionReturn(PETSC_SUCCESS); 557cd0c2139SMatthew G Knepley /* Step 1: Expand chart */ 5589566063dSJacob Faibussowitsch PetscCall(DMPlexGetChart(dm, &pStart, &pEnd)); 5590974a383SToby Isaac pEnd = DMPlexShiftPoint_Internal(pEnd, depth, depthShift); 5609566063dSJacob Faibussowitsch PetscCall(DMPlexSetChart(dmNew, pStart, pEnd)); 5619566063dSJacob Faibussowitsch PetscCall(DMCreateLabel(dmNew, "depth")); 5629566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthLabel(dmNew, &depthLabel)); 5639566063dSJacob Faibussowitsch PetscCall(DMCreateLabel(dmNew, "celltype")); 564cd0c2139SMatthew G Knepley /* Step 2: Set cone and support sizes */ 565cd0c2139SMatthew G Knepley for (d = 0; d <= depth; ++d) { 566fa8e8ae5SToby Isaac PetscInt pStartNew, pEndNew; 567fa8e8ae5SToby Isaac IS pIS; 568fa8e8ae5SToby Isaac 5699566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthStratum(dm, d, &pStart, &pEnd)); 570fa8e8ae5SToby Isaac pStartNew = DMPlexShiftPoint_Internal(pStart, depth, depthShift); 571fa8e8ae5SToby Isaac pEndNew = DMPlexShiftPoint_Internal(pEnd, depth, depthShift); 5729566063dSJacob Faibussowitsch PetscCall(ISCreateStride(PETSC_COMM_SELF, pEndNew - pStartNew, pStartNew, 1, &pIS)); 5739566063dSJacob Faibussowitsch PetscCall(DMLabelSetStratumIS(depthLabel, d, pIS)); 5749566063dSJacob Faibussowitsch PetscCall(ISDestroy(&pIS)); 575cd0c2139SMatthew G Knepley for (p = pStart; p < pEnd; ++p) { 5762582d50cSToby Isaac PetscInt newp = DMPlexShiftPoint_Internal(p, depth, depthShift); 577cd0c2139SMatthew G Knepley PetscInt size; 578412e9a14SMatthew G. Knepley DMPolytopeType ct; 579cd0c2139SMatthew G Knepley 5809566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, p, &size)); 5819566063dSJacob Faibussowitsch PetscCall(DMPlexSetConeSize(dmNew, newp, size)); 5829566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dm, p, &size)); 5839566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupportSize(dmNew, newp, size)); 5849566063dSJacob Faibussowitsch PetscCall(DMPlexGetCellType(dm, p, &ct)); 5859566063dSJacob Faibussowitsch PetscCall(DMPlexSetCellType(dmNew, newp, ct)); 586cd0c2139SMatthew G Knepley } 587cd0c2139SMatthew G Knepley } 5883ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 589cd0c2139SMatthew G Knepley } 590cd0c2139SMatthew G Knepley 591d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexShiftPoints_Internal(DM dm, PetscInt depthShift[], DM dmNew) 592d71ae5a4SJacob Faibussowitsch { 5932582d50cSToby Isaac PetscInt *newpoints; 5942582d50cSToby Isaac PetscInt depth = 0, maxConeSize, maxSupportSize, maxConeSizeNew, maxSupportSizeNew, pStart, pEnd, p; 595cd0c2139SMatthew G Knepley 596cd0c2139SMatthew G Knepley PetscFunctionBegin; 5979566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepth(dm, &depth)); 5983ba16761SJacob Faibussowitsch if (depth < 0) PetscFunctionReturn(PETSC_SUCCESS); 5999566063dSJacob Faibussowitsch PetscCall(DMPlexGetMaxSizes(dm, &maxConeSize, &maxSupportSize)); 6009566063dSJacob Faibussowitsch PetscCall(DMPlexGetMaxSizes(dmNew, &maxConeSizeNew, &maxSupportSizeNew)); 6019566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(PetscMax(PetscMax(maxConeSize, maxSupportSize), PetscMax(maxConeSizeNew, maxSupportSizeNew)), &newpoints)); 602cd0c2139SMatthew G Knepley /* Step 5: Set cones and supports */ 6039566063dSJacob Faibussowitsch PetscCall(DMPlexGetChart(dm, &pStart, &pEnd)); 604cd0c2139SMatthew G Knepley for (p = pStart; p < pEnd; ++p) { 605cd0c2139SMatthew G Knepley const PetscInt *points = NULL, *orientations = NULL; 6062582d50cSToby Isaac PetscInt size, sizeNew, i, newp = DMPlexShiftPoint_Internal(p, depth, depthShift); 607cd0c2139SMatthew G Knepley 6089566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, p, &size)); 6099566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, p, &points)); 6109566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeOrientation(dm, p, &orientations)); 611ad540459SPierre Jolivet for (i = 0; i < size; ++i) newpoints[i] = DMPlexShiftPoint_Internal(points[i], depth, depthShift); 6129566063dSJacob Faibussowitsch PetscCall(DMPlexSetCone(dmNew, newp, newpoints)); 6139566063dSJacob Faibussowitsch PetscCall(DMPlexSetConeOrientation(dmNew, newp, orientations)); 6149566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dm, p, &size)); 6159566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dmNew, newp, &sizeNew)); 6169566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(dm, p, &points)); 617ad540459SPierre Jolivet for (i = 0; i < size; ++i) newpoints[i] = DMPlexShiftPoint_Internal(points[i], depth, depthShift); 618dcbb62e8SMatthew G. Knepley for (i = size; i < sizeNew; ++i) newpoints[i] = 0; 6199566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupport(dmNew, newp, newpoints)); 620cd0c2139SMatthew G Knepley } 6219566063dSJacob Faibussowitsch PetscCall(PetscFree(newpoints)); 6223ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 623cd0c2139SMatthew G Knepley } 624cd0c2139SMatthew G Knepley 625d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexShiftCoordinates_Internal(DM dm, PetscInt depthShift[], DM dmNew) 626d71ae5a4SJacob Faibussowitsch { 627cd0c2139SMatthew G Knepley PetscSection coordSection, newCoordSection; 628cd0c2139SMatthew G Knepley Vec coordinates, newCoordinates; 629cd0c2139SMatthew G Knepley PetscScalar *coords, *newCoords; 630f2b8cce1SMatthew G. Knepley PetscInt coordSize, sStart, sEnd; 631f2b8cce1SMatthew G. Knepley PetscInt dim, depth = 0, cStart, cEnd, cStartNew, cEndNew, c, vStart, vEnd, vStartNew, vEndNew, v; 632f2b8cce1SMatthew G. Knepley PetscBool hasCells; 633cd0c2139SMatthew G Knepley 634cd0c2139SMatthew G Knepley PetscFunctionBegin; 6359566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDim(dm, &dim)); 6369566063dSJacob Faibussowitsch PetscCall(DMSetCoordinateDim(dmNew, dim)); 6379566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepth(dm, &depth)); 638cd0c2139SMatthew G Knepley /* Step 8: Convert coordinates */ 6399566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthStratum(dm, 0, &vStart, &vEnd)); 6409566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(dm, 0, &cStart, &cEnd)); 6419566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthStratum(dmNew, 0, &vStartNew, &vEndNew)); 6429566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(dmNew, 0, &cStartNew, &cEndNew)); 6439566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateSection(dm, &coordSection)); 6449566063dSJacob Faibussowitsch PetscCall(PetscSectionCreate(PetscObjectComm((PetscObject)dm), &newCoordSection)); 6459566063dSJacob Faibussowitsch PetscCall(PetscSectionSetNumFields(newCoordSection, 1)); 6469566063dSJacob Faibussowitsch PetscCall(PetscSectionSetFieldComponents(newCoordSection, 0, dim)); 6479566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(coordSection, &sStart, &sEnd)); 648f2b8cce1SMatthew G. Knepley hasCells = sStart == cStart ? PETSC_TRUE : PETSC_FALSE; 6499566063dSJacob Faibussowitsch PetscCall(PetscSectionSetChart(newCoordSection, hasCells ? cStartNew : vStartNew, vEndNew)); 650f2b8cce1SMatthew G. Knepley if (hasCells) { 651f2b8cce1SMatthew G. Knepley for (c = cStart; c < cEnd; ++c) { 652f2b8cce1SMatthew G. Knepley PetscInt cNew = DMPlexShiftPoint_Internal(c, depth, depthShift), dof; 653f2b8cce1SMatthew G. Knepley 6549566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(coordSection, c, &dof)); 6559566063dSJacob Faibussowitsch PetscCall(PetscSectionSetDof(newCoordSection, cNew, dof)); 6569566063dSJacob Faibussowitsch PetscCall(PetscSectionSetFieldDof(newCoordSection, cNew, 0, dof)); 657f2b8cce1SMatthew G. Knepley } 658f2b8cce1SMatthew G. Knepley } 659cd0c2139SMatthew G Knepley for (v = vStartNew; v < vEndNew; ++v) { 6609566063dSJacob Faibussowitsch PetscCall(PetscSectionSetDof(newCoordSection, v, dim)); 6619566063dSJacob Faibussowitsch PetscCall(PetscSectionSetFieldDof(newCoordSection, v, 0, dim)); 662cd0c2139SMatthew G Knepley } 6639566063dSJacob Faibussowitsch PetscCall(PetscSectionSetUp(newCoordSection)); 6649566063dSJacob Faibussowitsch PetscCall(DMSetCoordinateSection(dmNew, PETSC_DETERMINE, newCoordSection)); 6659566063dSJacob Faibussowitsch PetscCall(PetscSectionGetStorageSize(newCoordSection, &coordSize)); 6669566063dSJacob Faibussowitsch PetscCall(VecCreate(PETSC_COMM_SELF, &newCoordinates)); 6679566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)newCoordinates, "coordinates")); 6689566063dSJacob Faibussowitsch PetscCall(VecSetSizes(newCoordinates, coordSize, PETSC_DETERMINE)); 6699566063dSJacob Faibussowitsch PetscCall(VecSetBlockSize(newCoordinates, dim)); 6709566063dSJacob Faibussowitsch PetscCall(VecSetType(newCoordinates, VECSTANDARD)); 6719566063dSJacob Faibussowitsch PetscCall(DMSetCoordinatesLocal(dmNew, newCoordinates)); 6729566063dSJacob Faibussowitsch PetscCall(DMGetCoordinatesLocal(dm, &coordinates)); 6739566063dSJacob Faibussowitsch PetscCall(VecGetArray(coordinates, &coords)); 6749566063dSJacob Faibussowitsch PetscCall(VecGetArray(newCoordinates, &newCoords)); 675f2b8cce1SMatthew G. Knepley if (hasCells) { 676f2b8cce1SMatthew G. Knepley for (c = cStart; c < cEnd; ++c) { 677f2b8cce1SMatthew G. Knepley PetscInt cNew = DMPlexShiftPoint_Internal(c, depth, depthShift), dof, off, noff, d; 678f2b8cce1SMatthew G. Knepley 6799566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(coordSection, c, &dof)); 6809566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(coordSection, c, &off)); 6819566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(newCoordSection, cNew, &noff)); 682f2b8cce1SMatthew G. Knepley for (d = 0; d < dof; ++d) newCoords[noff + d] = coords[off + d]; 683f2b8cce1SMatthew G. Knepley } 684f2b8cce1SMatthew G. Knepley } 685cd0c2139SMatthew G Knepley for (v = vStart; v < vEnd; ++v) { 686cd0c2139SMatthew G Knepley PetscInt dof, off, noff, d; 687cd0c2139SMatthew G Knepley 6889566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(coordSection, v, &dof)); 6899566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(coordSection, v, &off)); 6909566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(newCoordSection, DMPlexShiftPoint_Internal(v, depth, depthShift), &noff)); 691f2b8cce1SMatthew G. Knepley for (d = 0; d < dof; ++d) newCoords[noff + d] = coords[off + d]; 692cd0c2139SMatthew G Knepley } 6939566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(coordinates, &coords)); 6949566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(newCoordinates, &newCoords)); 6959566063dSJacob Faibussowitsch PetscCall(VecDestroy(&newCoordinates)); 6969566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&newCoordSection)); 6973ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 698cd0c2139SMatthew G Knepley } 699cd0c2139SMatthew G Knepley 700d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexShiftSF_Single(DM dm, PetscInt depthShift[], PetscSF sf, PetscSF sfNew) 701d71ae5a4SJacob Faibussowitsch { 702cd0c2139SMatthew G Knepley const PetscSFNode *remotePoints; 703cd0c2139SMatthew G Knepley PetscSFNode *gremotePoints; 704cd0c2139SMatthew G Knepley const PetscInt *localPoints; 705cd0c2139SMatthew G Knepley PetscInt *glocalPoints, *newLocation, *newRemoteLocation; 7060e33faafSMatthew G. Knepley PetscInt numRoots, numLeaves, l, pStart, pEnd, depth = 0, totShift = 0; 707cd0c2139SMatthew G Knepley 708cd0c2139SMatthew G Knepley PetscFunctionBegin; 7099566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepth(dm, &depth)); 7109566063dSJacob Faibussowitsch PetscCall(DMPlexGetChart(dm, &pStart, &pEnd)); 7119566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(sf, &numRoots, &numLeaves, &localPoints, &remotePoints)); 7126e21efdcSToby Isaac totShift = DMPlexShiftPoint_Internal(pEnd, depth, depthShift) - pEnd; 713cd0c2139SMatthew G Knepley if (numRoots >= 0) { 7149566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(numRoots, &newLocation, pEnd - pStart, &newRemoteLocation)); 7150e33faafSMatthew G. Knepley for (l = 0; l < numRoots; ++l) newLocation[l] = DMPlexShiftPoint_Internal(l, depth, depthShift); 7169566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(sf, MPIU_INT, newLocation, newRemoteLocation, MPI_REPLACE)); 7179566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(sf, MPIU_INT, newLocation, newRemoteLocation, MPI_REPLACE)); 7189566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(numLeaves, &glocalPoints)); 7199566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(numLeaves, &gremotePoints)); 720cd0c2139SMatthew G Knepley for (l = 0; l < numLeaves; ++l) { 7212582d50cSToby Isaac glocalPoints[l] = DMPlexShiftPoint_Internal(localPoints[l], depth, depthShift); 722cd0c2139SMatthew G Knepley gremotePoints[l].rank = remotePoints[l].rank; 723cd0c2139SMatthew G Knepley gremotePoints[l].index = newRemoteLocation[localPoints[l]]; 724cd0c2139SMatthew G Knepley } 7259566063dSJacob Faibussowitsch PetscCall(PetscFree2(newLocation, newRemoteLocation)); 7269566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(sfNew, numRoots + totShift, numLeaves, glocalPoints, PETSC_OWN_POINTER, gremotePoints, PETSC_OWN_POINTER)); 7270e33faafSMatthew G. Knepley } 7283ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7290e33faafSMatthew G. Knepley } 7300e33faafSMatthew G. Knepley 731d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexShiftSF_Internal(DM dm, PetscInt depthShift[], DM dmNew) 732d71ae5a4SJacob Faibussowitsch { 7330e33faafSMatthew G. Knepley PetscSF sfPoint, sfPointNew; 7340e33faafSMatthew G. Knepley PetscBool useNatural; 7350e33faafSMatthew G. Knepley 7360e33faafSMatthew G. Knepley PetscFunctionBegin; 7370e33faafSMatthew G. Knepley /* Step 9: Convert pointSF */ 7389566063dSJacob Faibussowitsch PetscCall(DMGetPointSF(dm, &sfPoint)); 7399566063dSJacob Faibussowitsch PetscCall(DMGetPointSF(dmNew, &sfPointNew)); 7409566063dSJacob Faibussowitsch PetscCall(DMPlexShiftSF_Single(dm, depthShift, sfPoint, sfPointNew)); 7410e33faafSMatthew G. Knepley /* Step 9b: Convert naturalSF */ 7429566063dSJacob Faibussowitsch PetscCall(DMGetUseNatural(dm, &useNatural)); 7430e33faafSMatthew G. Knepley if (useNatural) { 7440e33faafSMatthew G. Knepley PetscSF sfNat, sfNatNew; 7450e33faafSMatthew G. Knepley 7469566063dSJacob Faibussowitsch PetscCall(DMSetUseNatural(dmNew, useNatural)); 7479566063dSJacob Faibussowitsch PetscCall(DMGetNaturalSF(dm, &sfNat)); 7489566063dSJacob Faibussowitsch PetscCall(DMGetNaturalSF(dmNew, &sfNatNew)); 7499566063dSJacob Faibussowitsch PetscCall(DMPlexShiftSF_Single(dm, depthShift, sfNat, sfNatNew)); 750cd0c2139SMatthew G Knepley } 7513ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 752cd0c2139SMatthew G Knepley } 753cd0c2139SMatthew G Knepley 754d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexShiftLabels_Internal(DM dm, PetscInt depthShift[], DM dmNew) 755d71ae5a4SJacob Faibussowitsch { 756d56405f8SMatthew G. Knepley PetscInt depth = 0, numLabels, l; 757cd0c2139SMatthew G Knepley 758cd0c2139SMatthew G Knepley PetscFunctionBegin; 7599566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepth(dm, &depth)); 760cd0c2139SMatthew G Knepley /* Step 10: Convert labels */ 7619566063dSJacob Faibussowitsch PetscCall(DMGetNumLabels(dm, &numLabels)); 762cd0c2139SMatthew G Knepley for (l = 0; l < numLabels; ++l) { 763cd0c2139SMatthew G Knepley DMLabel label, newlabel; 764cd0c2139SMatthew G Knepley const char *lname; 765fa8e8ae5SToby Isaac PetscBool isDepth, isDim; 766cd0c2139SMatthew G Knepley IS valueIS; 767cd0c2139SMatthew G Knepley const PetscInt *values; 768cd0c2139SMatthew G Knepley PetscInt numValues, val; 769cd0c2139SMatthew G Knepley 7709566063dSJacob Faibussowitsch PetscCall(DMGetLabelName(dm, l, &lname)); 7719566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(lname, "depth", &isDepth)); 772cd0c2139SMatthew G Knepley if (isDepth) continue; 7739566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(lname, "dim", &isDim)); 774fa8e8ae5SToby Isaac if (isDim) continue; 7759566063dSJacob Faibussowitsch PetscCall(DMCreateLabel(dmNew, lname)); 7769566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, lname, &label)); 7779566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dmNew, lname, &newlabel)); 7789566063dSJacob Faibussowitsch PetscCall(DMLabelGetDefaultValue(label, &val)); 7799566063dSJacob Faibussowitsch PetscCall(DMLabelSetDefaultValue(newlabel, val)); 7809566063dSJacob Faibussowitsch PetscCall(DMLabelGetValueIS(label, &valueIS)); 7819566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(valueIS, &numValues)); 7829566063dSJacob Faibussowitsch PetscCall(ISGetIndices(valueIS, &values)); 783cd0c2139SMatthew G Knepley for (val = 0; val < numValues; ++val) { 784cd0c2139SMatthew G Knepley IS pointIS; 785cd0c2139SMatthew G Knepley const PetscInt *points; 786cd0c2139SMatthew G Knepley PetscInt numPoints, p; 787cd0c2139SMatthew G Knepley 7889566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(label, values[val], &pointIS)); 7899566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(pointIS, &numPoints)); 7909566063dSJacob Faibussowitsch PetscCall(ISGetIndices(pointIS, &points)); 791cd0c2139SMatthew G Knepley for (p = 0; p < numPoints; ++p) { 7922582d50cSToby Isaac const PetscInt newpoint = DMPlexShiftPoint_Internal(points[p], depth, depthShift); 793cd0c2139SMatthew G Knepley 7949566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(newlabel, newpoint, values[val])); 795cd0c2139SMatthew G Knepley } 7969566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(pointIS, &points)); 7979566063dSJacob Faibussowitsch PetscCall(ISDestroy(&pointIS)); 798cd0c2139SMatthew G Knepley } 7999566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(valueIS, &values)); 8009566063dSJacob Faibussowitsch PetscCall(ISDestroy(&valueIS)); 801cd0c2139SMatthew G Knepley } 8023ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 803d56405f8SMatthew G. Knepley } 804d56405f8SMatthew G. Knepley 805d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexCreateVTKLabel_Internal(DM dm, PetscBool createGhostLabel, DM dmNew) 806d71ae5a4SJacob Faibussowitsch { 807d56405f8SMatthew G. Knepley PetscSF sfPoint; 808d56405f8SMatthew G. Knepley DMLabel vtkLabel, ghostLabel = NULL; 809d56405f8SMatthew G. Knepley const PetscSFNode *leafRemote; 810d56405f8SMatthew G. Knepley const PetscInt *leafLocal; 811d56405f8SMatthew G. Knepley PetscInt cellHeight, cStart, cEnd, c, fStart, fEnd, f, numLeaves, l; 812d56405f8SMatthew G. Knepley PetscMPIInt rank; 813d56405f8SMatthew G. Knepley 814d56405f8SMatthew G. Knepley PetscFunctionBegin; 815cd0c2139SMatthew G Knepley /* Step 11: Make label for output (vtk) and to mark ghost points (ghost) */ 8169566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)dm), &rank)); 8179566063dSJacob Faibussowitsch PetscCall(DMGetPointSF(dm, &sfPoint)); 8189566063dSJacob Faibussowitsch PetscCall(DMPlexGetVTKCellHeight(dmNew, &cellHeight)); 8199566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(dm, cellHeight, &cStart, &cEnd)); 8209566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(sfPoint, NULL, &numLeaves, &leafLocal, &leafRemote)); 8219566063dSJacob Faibussowitsch PetscCall(DMCreateLabel(dmNew, "vtk")); 8229566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dmNew, "vtk", &vtkLabel)); 823d56405f8SMatthew G. Knepley if (createGhostLabel) { 8249566063dSJacob Faibussowitsch PetscCall(DMCreateLabel(dmNew, "ghost")); 8259566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dmNew, "ghost", &ghostLabel)); 826d56405f8SMatthew G. Knepley } 827cd0c2139SMatthew G Knepley for (l = 0, c = cStart; l < numLeaves && c < cEnd; ++l, ++c) { 82848a46eb9SPierre Jolivet for (; c < leafLocal[l] && c < cEnd; ++c) PetscCall(DMLabelSetValue(vtkLabel, c, 1)); 829cd0c2139SMatthew G Knepley if (leafLocal[l] >= cEnd) break; 830cd0c2139SMatthew G Knepley if (leafRemote[l].rank == rank) { 8319566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(vtkLabel, c, 1)); 8321baa6e33SBarry Smith } else if (ghostLabel) PetscCall(DMLabelSetValue(ghostLabel, c, 2)); 833cd0c2139SMatthew G Knepley } 83448a46eb9SPierre Jolivet for (; c < cEnd; ++c) PetscCall(DMLabelSetValue(vtkLabel, c, 1)); 835d56405f8SMatthew G. Knepley if (ghostLabel) { 8369566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(dmNew, 1, &fStart, &fEnd)); 837cd0c2139SMatthew G Knepley for (f = fStart; f < fEnd; ++f) { 838cd0c2139SMatthew G Knepley PetscInt numCells; 839cd0c2139SMatthew G Knepley 8409566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dmNew, f, &numCells)); 841cd0c2139SMatthew G Knepley if (numCells < 2) { 8429566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(ghostLabel, f, 1)); 843cd0c2139SMatthew G Knepley } else { 844cd0c2139SMatthew G Knepley const PetscInt *cells = NULL; 845cd0c2139SMatthew G Knepley PetscInt vA, vB; 846cd0c2139SMatthew G Knepley 8479566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(dmNew, f, &cells)); 8489566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(vtkLabel, cells[0], &vA)); 8499566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(vtkLabel, cells[1], &vB)); 8509566063dSJacob Faibussowitsch if (vA != 1 && vB != 1) PetscCall(DMLabelSetValue(ghostLabel, f, 1)); 851cd0c2139SMatthew G Knepley } 852cd0c2139SMatthew G Knepley } 853d56405f8SMatthew G. Knepley } 8543ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 855cd0c2139SMatthew G Knepley } 856cd0c2139SMatthew G Knepley 857d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexShiftTree_Internal(DM dm, PetscInt depthShift[], DM dmNew) 858d71ae5a4SJacob Faibussowitsch { 859ca04dac2SToby Isaac DM refTree; 860ca04dac2SToby Isaac PetscSection pSec; 861ca04dac2SToby Isaac PetscInt *parents, *childIDs; 862ca04dac2SToby Isaac 863ca04dac2SToby Isaac PetscFunctionBegin; 8649566063dSJacob Faibussowitsch PetscCall(DMPlexGetReferenceTree(dm, &refTree)); 8659566063dSJacob Faibussowitsch PetscCall(DMPlexSetReferenceTree(dmNew, refTree)); 8669566063dSJacob Faibussowitsch PetscCall(DMPlexGetTree(dm, &pSec, &parents, &childIDs, NULL, NULL)); 867ca04dac2SToby Isaac if (pSec) { 8682582d50cSToby Isaac PetscInt p, pStart, pEnd, *parentsShifted, pStartShifted, pEndShifted, depth; 869fb4630b5SToby Isaac PetscInt *childIDsShifted; 870ca04dac2SToby Isaac PetscSection pSecShifted; 871ca04dac2SToby Isaac 8729566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(pSec, &pStart, &pEnd)); 8739566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepth(dm, &depth)); 8742582d50cSToby Isaac pStartShifted = DMPlexShiftPoint_Internal(pStart, depth, depthShift); 8752582d50cSToby Isaac pEndShifted = DMPlexShiftPoint_Internal(pEnd, depth, depthShift); 8769566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(pEndShifted - pStartShifted, &parentsShifted, pEndShifted - pStartShifted, &childIDsShifted)); 8779566063dSJacob Faibussowitsch PetscCall(PetscSectionCreate(PetscObjectComm((PetscObject)dmNew), &pSecShifted)); 8789566063dSJacob Faibussowitsch PetscCall(PetscSectionSetChart(pSecShifted, pStartShifted, pEndShifted)); 879ca04dac2SToby Isaac for (p = pStartShifted; p < pEndShifted; p++) { 880fb4630b5SToby Isaac /* start off assuming no children */ 8819566063dSJacob Faibussowitsch PetscCall(PetscSectionSetDof(pSecShifted, p, 0)); 882fb4630b5SToby Isaac } 883fb4630b5SToby Isaac for (p = pStart; p < pEnd; p++) { 884fb4630b5SToby Isaac PetscInt dof; 885fb4630b5SToby Isaac PetscInt pNew = DMPlexShiftPoint_Internal(p, depth, depthShift); 886ca04dac2SToby Isaac 8879566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(pSec, p, &dof)); 8889566063dSJacob Faibussowitsch PetscCall(PetscSectionSetDof(pSecShifted, pNew, dof)); 889ca04dac2SToby Isaac } 8909566063dSJacob Faibussowitsch PetscCall(PetscSectionSetUp(pSecShifted)); 891fb4630b5SToby Isaac for (p = pStart; p < pEnd; p++) { 892fb4630b5SToby Isaac PetscInt dof; 893fb4630b5SToby Isaac PetscInt pNew = DMPlexShiftPoint_Internal(p, depth, depthShift); 894fb4630b5SToby Isaac 8959566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(pSec, p, &dof)); 896fb4630b5SToby Isaac if (dof) { 897fb4630b5SToby Isaac PetscInt off, offNew; 898fb4630b5SToby Isaac 8999566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(pSec, p, &off)); 9009566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(pSecShifted, pNew, &offNew)); 901fb4630b5SToby Isaac parentsShifted[offNew] = DMPlexShiftPoint_Internal(parents[off], depth, depthShift); 902fb4630b5SToby Isaac childIDsShifted[offNew] = childIDs[off]; 903fb4630b5SToby Isaac } 904fb4630b5SToby Isaac } 9059566063dSJacob Faibussowitsch PetscCall(DMPlexSetTree(dmNew, pSecShifted, parentsShifted, childIDsShifted)); 9069566063dSJacob Faibussowitsch PetscCall(PetscFree2(parentsShifted, childIDsShifted)); 9079566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&pSecShifted)); 908ca04dac2SToby Isaac } 9093ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 910ca04dac2SToby Isaac } 911ca04dac2SToby Isaac 912d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexConstructGhostCells_Internal(DM dm, DMLabel label, PetscInt *numGhostCells, DM gdm) 913d71ae5a4SJacob Faibussowitsch { 914da97024aSMatthew G. Knepley PetscSF sf; 915cd0c2139SMatthew G Knepley IS valueIS; 916da97024aSMatthew G. Knepley const PetscInt *values, *leaves; 917cd0c2139SMatthew G Knepley PetscInt *depthShift; 9182582d50cSToby Isaac PetscInt d, depth = 0, nleaves, loc, Ng, numFS, fs, fStart, fEnd, ghostCell, cEnd, c; 9194fb89dddSMatthew G. Knepley const PetscReal *maxCell, *Lstart, *L; 920cd0c2139SMatthew G Knepley 921cd0c2139SMatthew G Knepley PetscFunctionBegin; 9229566063dSJacob Faibussowitsch PetscCall(DMGetPointSF(dm, &sf)); 9239566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(sf, NULL, &nleaves, &leaves, NULL)); 924da97024aSMatthew G. Knepley nleaves = PetscMax(0, nleaves); 9259566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(dm, 1, &fStart, &fEnd)); 926cd0c2139SMatthew G Knepley /* Count ghost cells */ 9279566063dSJacob Faibussowitsch PetscCall(DMLabelGetValueIS(label, &valueIS)); 9289566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(valueIS, &numFS)); 9299566063dSJacob Faibussowitsch PetscCall(ISGetIndices(valueIS, &values)); 9304a6cfa73SMatthew G. Knepley Ng = 0; 931cd0c2139SMatthew G Knepley for (fs = 0; fs < numFS; ++fs) { 93246c796b9SMatthew G. Knepley IS faceIS; 93346c796b9SMatthew G. Knepley const PetscInt *faces; 93446c796b9SMatthew G. Knepley PetscInt numFaces, f, numBdFaces = 0; 935cd0c2139SMatthew G Knepley 9369566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(label, values[fs], &faceIS)); 9379566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(faceIS, &numFaces)); 9389566063dSJacob Faibussowitsch PetscCall(ISGetIndices(faceIS, &faces)); 93946c796b9SMatthew G. Knepley for (f = 0; f < numFaces; ++f) { 940ca04dac2SToby Isaac PetscInt numChildren; 941ca04dac2SToby Isaac 9429566063dSJacob Faibussowitsch PetscCall(PetscFindInt(faces[f], nleaves, leaves, &loc)); 9439566063dSJacob Faibussowitsch PetscCall(DMPlexGetTreeChildren(dm, faces[f], &numChildren, NULL)); 944ca04dac2SToby Isaac /* non-local and ancestors points don't get to register ghosts */ 945ca04dac2SToby Isaac if (loc >= 0 || numChildren) continue; 94646c796b9SMatthew G. Knepley if ((faces[f] >= fStart) && (faces[f] < fEnd)) ++numBdFaces; 94746c796b9SMatthew G. Knepley } 9484a6cfa73SMatthew G. Knepley Ng += numBdFaces; 9499566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(faceIS, &faces)); 9509566063dSJacob Faibussowitsch PetscCall(ISDestroy(&faceIS)); 951cd0c2139SMatthew G Knepley } 9529566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepth(dm, &depth)); 9539566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(2 * (depth + 1), &depthShift)); 9542582d50cSToby Isaac for (d = 0; d <= depth; d++) { 95559eef20bSToby Isaac PetscInt dEnd; 9562582d50cSToby Isaac 9579566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthStratum(dm, d, NULL, &dEnd)); 95859eef20bSToby Isaac depthShift[2 * d] = dEnd; 9592582d50cSToby Isaac depthShift[2 * d + 1] = 0; 9602582d50cSToby Isaac } 9612582d50cSToby Isaac if (depth >= 0) depthShift[2 * depth + 1] = Ng; 9629566063dSJacob Faibussowitsch PetscCall(DMPlexShiftPointSetUp_Internal(depth, depthShift)); 9639566063dSJacob Faibussowitsch PetscCall(DMPlexShiftSizes_Internal(dm, depthShift, gdm)); 964cd0c2139SMatthew G Knepley /* Step 3: Set cone/support sizes for new points */ 9659566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(dm, 0, NULL, &cEnd)); 96648a46eb9SPierre Jolivet for (c = cEnd; c < cEnd + Ng; ++c) PetscCall(DMPlexSetConeSize(gdm, c, 1)); 967cd0c2139SMatthew G Knepley for (fs = 0; fs < numFS; ++fs) { 968cd0c2139SMatthew G Knepley IS faceIS; 969cd0c2139SMatthew G Knepley const PetscInt *faces; 970cd0c2139SMatthew G Knepley PetscInt numFaces, f; 971cd0c2139SMatthew G Knepley 9729566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(label, values[fs], &faceIS)); 9739566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(faceIS, &numFaces)); 9749566063dSJacob Faibussowitsch PetscCall(ISGetIndices(faceIS, &faces)); 975cd0c2139SMatthew G Knepley for (f = 0; f < numFaces; ++f) { 976ca04dac2SToby Isaac PetscInt size, numChildren; 977cd0c2139SMatthew G Knepley 9789566063dSJacob Faibussowitsch PetscCall(PetscFindInt(faces[f], nleaves, leaves, &loc)); 9799566063dSJacob Faibussowitsch PetscCall(DMPlexGetTreeChildren(dm, faces[f], &numChildren, NULL)); 980ca04dac2SToby Isaac if (loc >= 0 || numChildren) continue; 98146c796b9SMatthew G. Knepley if ((faces[f] < fStart) || (faces[f] >= fEnd)) continue; 9829566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dm, faces[f], &size)); 98363a3b9bcSJacob Faibussowitsch PetscCheck(size == 1, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "DM has boundary face %" PetscInt_FMT " with %" PetscInt_FMT " support cells", faces[f], size); 9849566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupportSize(gdm, faces[f] + Ng, 2)); 985cd0c2139SMatthew G Knepley } 9869566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(faceIS, &faces)); 9879566063dSJacob Faibussowitsch PetscCall(ISDestroy(&faceIS)); 988cd0c2139SMatthew G Knepley } 989cd0c2139SMatthew G Knepley /* Step 4: Setup ghosted DM */ 9909566063dSJacob Faibussowitsch PetscCall(DMSetUp(gdm)); 9919566063dSJacob Faibussowitsch PetscCall(DMPlexShiftPoints_Internal(dm, depthShift, gdm)); 992cd0c2139SMatthew G Knepley /* Step 6: Set cones and supports for new points */ 993cd0c2139SMatthew G Knepley ghostCell = cEnd; 994cd0c2139SMatthew G Knepley for (fs = 0; fs < numFS; ++fs) { 995cd0c2139SMatthew G Knepley IS faceIS; 996cd0c2139SMatthew G Knepley const PetscInt *faces; 997cd0c2139SMatthew G Knepley PetscInt numFaces, f; 998cd0c2139SMatthew G Knepley 9999566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(label, values[fs], &faceIS)); 10009566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(faceIS, &numFaces)); 10019566063dSJacob Faibussowitsch PetscCall(ISGetIndices(faceIS, &faces)); 100246c796b9SMatthew G. Knepley for (f = 0; f < numFaces; ++f) { 1003ca04dac2SToby Isaac PetscInt newFace = faces[f] + Ng, numChildren; 1004cd0c2139SMatthew G Knepley 10059566063dSJacob Faibussowitsch PetscCall(PetscFindInt(faces[f], nleaves, leaves, &loc)); 10069566063dSJacob Faibussowitsch PetscCall(DMPlexGetTreeChildren(dm, faces[f], &numChildren, NULL)); 1007ca04dac2SToby Isaac if (loc >= 0 || numChildren) continue; 100846c796b9SMatthew G. Knepley if ((faces[f] < fStart) || (faces[f] >= fEnd)) continue; 10099566063dSJacob Faibussowitsch PetscCall(DMPlexSetCone(gdm, ghostCell, &newFace)); 10109566063dSJacob Faibussowitsch PetscCall(DMPlexInsertSupport(gdm, newFace, 1, ghostCell)); 101146c796b9SMatthew G. Knepley ++ghostCell; 1012cd0c2139SMatthew G Knepley } 10139566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(faceIS, &faces)); 10149566063dSJacob Faibussowitsch PetscCall(ISDestroy(&faceIS)); 1015cd0c2139SMatthew G Knepley } 10169566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(valueIS, &values)); 10179566063dSJacob Faibussowitsch PetscCall(ISDestroy(&valueIS)); 10189566063dSJacob Faibussowitsch PetscCall(DMPlexShiftCoordinates_Internal(dm, depthShift, gdm)); 10199566063dSJacob Faibussowitsch PetscCall(DMPlexShiftSF_Internal(dm, depthShift, gdm)); 10209566063dSJacob Faibussowitsch PetscCall(DMPlexShiftLabels_Internal(dm, depthShift, gdm)); 10219566063dSJacob Faibussowitsch PetscCall(DMPlexCreateVTKLabel_Internal(dm, PETSC_TRUE, gdm)); 10229566063dSJacob Faibussowitsch PetscCall(DMPlexShiftTree_Internal(dm, depthShift, gdm)); 10239566063dSJacob Faibussowitsch PetscCall(PetscFree(depthShift)); 102448a46eb9SPierre Jolivet for (c = cEnd; c < cEnd + Ng; ++c) PetscCall(DMPlexSetCellType(gdm, c, DM_POLYTOPE_FV_GHOST)); 1025966c7b3fSMatthew G. Knepley /* Step 7: Periodicity */ 10264fb89dddSMatthew G. Knepley PetscCall(DMGetPeriodicity(dm, &maxCell, &Lstart, &L)); 10274fb89dddSMatthew G. Knepley PetscCall(DMSetPeriodicity(gdm, maxCell, Lstart, L)); 10284a6cfa73SMatthew G. Knepley if (numGhostCells) *numGhostCells = Ng; 10293ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1030cd0c2139SMatthew G Knepley } 1031cd0c2139SMatthew G Knepley 1032cd0c2139SMatthew G Knepley /*@C 1033cd0c2139SMatthew G Knepley DMPlexConstructGhostCells - Construct ghost cells which connect to every boundary face 1034cd0c2139SMatthew G Knepley 103520f4b53cSBarry Smith Collective 1036cd0c2139SMatthew G Knepley 1037cd0c2139SMatthew G Knepley Input Parameters: 103820f4b53cSBarry Smith + dm - The original `DM` 103920f4b53cSBarry Smith - labelName - The label specifying the boundary faces, or "Face Sets" if this is `NULL` 1040cd0c2139SMatthew G Knepley 1041cd0c2139SMatthew G Knepley Output Parameters: 104220f4b53cSBarry Smith + numGhostCells - The number of ghost cells added to the `DM` 104320f4b53cSBarry Smith - dmGhosted - The new `DM` 1044cd0c2139SMatthew G Knepley 1045cd0c2139SMatthew G Knepley Level: developer 1046cd0c2139SMatthew G Knepley 104720f4b53cSBarry Smith Note: 104820f4b53cSBarry Smith If no label exists of that name, one will be created marking all boundary faces 104920f4b53cSBarry Smith 10501cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMCreate()` 105131266bc0SMatthew G. Knepley @*/ 1052d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexConstructGhostCells(DM dm, const char labelName[], PetscInt *numGhostCells, DM *dmGhosted) 1053d71ae5a4SJacob Faibussowitsch { 1054cd0c2139SMatthew G Knepley DM gdm; 1055cd0c2139SMatthew G Knepley DMLabel label; 1056cd0c2139SMatthew G Knepley const char *name = labelName ? labelName : "Face Sets"; 1057412e9a14SMatthew G. Knepley PetscInt dim, Ng = 0; 1058b0441da4SMatthew G. Knepley PetscBool useCone, useClosure; 1059cd0c2139SMatthew G Knepley 1060cd0c2139SMatthew G Knepley PetscFunctionBegin; 1061cd0c2139SMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 10624f572ea9SToby Isaac if (numGhostCells) PetscAssertPointer(numGhostCells, 3); 10634f572ea9SToby Isaac PetscAssertPointer(dmGhosted, 4); 10649566063dSJacob Faibussowitsch PetscCall(DMCreate(PetscObjectComm((PetscObject)dm), &gdm)); 10659566063dSJacob Faibussowitsch PetscCall(DMSetType(gdm, DMPLEX)); 10669566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 10679566063dSJacob Faibussowitsch PetscCall(DMSetDimension(gdm, dim)); 10689566063dSJacob Faibussowitsch PetscCall(DMGetBasicAdjacency(dm, &useCone, &useClosure)); 10699566063dSJacob Faibussowitsch PetscCall(DMSetBasicAdjacency(gdm, useCone, useClosure)); 10709566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, name, &label)); 1071cd0c2139SMatthew G Knepley if (!label) { 1072cd0c2139SMatthew G Knepley /* Get label for boundary faces */ 10739566063dSJacob Faibussowitsch PetscCall(DMCreateLabel(dm, name)); 10749566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, name, &label)); 10759566063dSJacob Faibussowitsch PetscCall(DMPlexMarkBoundaryFaces(dm, 1, label)); 1076cd0c2139SMatthew G Knepley } 10779566063dSJacob Faibussowitsch PetscCall(DMPlexConstructGhostCells_Internal(dm, label, &Ng, gdm)); 10789566063dSJacob Faibussowitsch PetscCall(DMCopyDisc(dm, gdm)); 10795de52c6dSVaclav Hapla PetscCall(DMPlexCopy_Internal(dm, PETSC_TRUE, PETSC_TRUE, gdm)); 1080cad26855SMatthew G. Knepley gdm->setfromoptionscalled = dm->setfromoptionscalled; 1081d80ece95SMatthew G. Knepley if (numGhostCells) *numGhostCells = Ng; 1082cd0c2139SMatthew G Knepley *dmGhosted = gdm; 10833ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1084cd0c2139SMatthew G Knepley } 1085cd0c2139SMatthew G Knepley 1086d71ae5a4SJacob Faibussowitsch static PetscErrorCode DivideCells_Private(DM dm, DMLabel label, DMPlexPointQueue queue) 1087d71ae5a4SJacob Faibussowitsch { 1088accc9626SMatthew G. Knepley PetscInt dim, d, shift = 100, *pStart, *pEnd; 1089accc9626SMatthew G. Knepley 1090accc9626SMatthew G. Knepley PetscFunctionBegin; 1091accc9626SMatthew G. Knepley PetscCall(DMGetDimension(dm, &dim)); 1092accc9626SMatthew G. Knepley PetscCall(PetscMalloc2(dim, &pStart, dim, &pEnd)); 109348a46eb9SPierre Jolivet for (d = 0; d < dim; ++d) PetscCall(DMPlexGetDepthStratum(dm, d, &pStart[d], &pEnd[d])); 1094accc9626SMatthew G. Knepley while (!DMPlexPointQueueEmpty(queue)) { 1095accc9626SMatthew G. Knepley PetscInt cell = -1; 1096accc9626SMatthew G. Knepley PetscInt *closure = NULL; 1097accc9626SMatthew G. Knepley PetscInt closureSize, cl, cval; 1098accc9626SMatthew G. Knepley 1099accc9626SMatthew G. Knepley PetscCall(DMPlexPointQueueDequeue(queue, &cell)); 1100accc9626SMatthew G. Knepley PetscCall(DMLabelGetValue(label, cell, &cval)); 1101accc9626SMatthew G. Knepley PetscCall(DMPlexGetTransitiveClosure(dm, cell, PETSC_TRUE, &closureSize, &closure)); 1102accc9626SMatthew G. Knepley /* Mark points in the cell closure that touch the fault */ 1103accc9626SMatthew G. Knepley for (d = 0; d < dim; ++d) { 1104accc9626SMatthew G. Knepley for (cl = 0; cl < closureSize * 2; cl += 2) { 1105accc9626SMatthew G. Knepley const PetscInt clp = closure[cl]; 1106accc9626SMatthew G. Knepley PetscInt clval; 1107accc9626SMatthew G. Knepley 1108accc9626SMatthew G. Knepley if ((clp < pStart[d]) || (clp >= pEnd[d])) continue; 1109accc9626SMatthew G. Knepley PetscCall(DMLabelGetValue(label, clp, &clval)); 1110accc9626SMatthew G. Knepley if (clval == -1) { 1111accc9626SMatthew G. Knepley const PetscInt *cone; 1112accc9626SMatthew G. Knepley PetscInt coneSize, c; 1113accc9626SMatthew G. Knepley 1114accc9626SMatthew G. Knepley /* If a cone point touches the fault, then this point touches the fault */ 1115accc9626SMatthew G. Knepley PetscCall(DMPlexGetCone(dm, clp, &cone)); 1116accc9626SMatthew G. Knepley PetscCall(DMPlexGetConeSize(dm, clp, &coneSize)); 1117accc9626SMatthew G. Knepley for (c = 0; c < coneSize; ++c) { 1118accc9626SMatthew G. Knepley PetscInt cpval; 1119accc9626SMatthew G. Knepley 1120accc9626SMatthew G. Knepley PetscCall(DMLabelGetValue(label, cone[c], &cpval)); 1121accc9626SMatthew G. Knepley if (cpval != -1) { 1122accc9626SMatthew G. Knepley PetscInt dep; 1123accc9626SMatthew G. Knepley 1124accc9626SMatthew G. Knepley PetscCall(DMPlexGetPointDepth(dm, clp, &dep)); 1125accc9626SMatthew G. Knepley clval = cval < 0 ? -(shift + dep) : shift + dep; 1126accc9626SMatthew G. Knepley PetscCall(DMLabelSetValue(label, clp, clval)); 1127accc9626SMatthew G. Knepley break; 1128accc9626SMatthew G. Knepley } 1129accc9626SMatthew G. Knepley } 1130accc9626SMatthew G. Knepley } 1131accc9626SMatthew G. Knepley /* Mark neighbor cells through marked faces (these cells must also touch the fault) */ 1132accc9626SMatthew G. Knepley if (d == dim - 1 && clval != -1) { 1133accc9626SMatthew G. Knepley const PetscInt *support; 1134accc9626SMatthew G. Knepley PetscInt supportSize, s, nval; 1135accc9626SMatthew G. Knepley 1136accc9626SMatthew G. Knepley PetscCall(DMPlexGetSupport(dm, clp, &support)); 1137accc9626SMatthew G. Knepley PetscCall(DMPlexGetSupportSize(dm, clp, &supportSize)); 1138accc9626SMatthew G. Knepley for (s = 0; s < supportSize; ++s) { 1139accc9626SMatthew G. Knepley PetscCall(DMLabelGetValue(label, support[s], &nval)); 1140accc9626SMatthew G. Knepley if (nval == -1) { 1141accc9626SMatthew G. Knepley PetscCall(DMLabelSetValue(label, support[s], clval < 0 ? clval - 1 : clval + 1)); 1142accc9626SMatthew G. Knepley PetscCall(DMPlexPointQueueEnqueue(queue, support[s])); 1143accc9626SMatthew G. Knepley } 1144accc9626SMatthew G. Knepley } 1145accc9626SMatthew G. Knepley } 1146accc9626SMatthew G. Knepley } 1147accc9626SMatthew G. Knepley } 1148accc9626SMatthew G. Knepley PetscCall(DMPlexRestoreTransitiveClosure(dm, cell, PETSC_TRUE, &closureSize, &closure)); 1149accc9626SMatthew G. Knepley } 1150accc9626SMatthew G. Knepley PetscCall(PetscFree2(pStart, pEnd)); 11513ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1152accc9626SMatthew G. Knepley } 1153accc9626SMatthew G. Knepley 1154accc9626SMatthew G. Knepley typedef struct { 1155accc9626SMatthew G. Knepley DM dm; 1156accc9626SMatthew G. Knepley DMPlexPointQueue queue; 1157accc9626SMatthew G. Knepley } PointDivision; 1158accc9626SMatthew G. Knepley 1159d71ae5a4SJacob Faibussowitsch static PetscErrorCode divideCell(DMLabel label, PetscInt p, PetscInt val, void *ctx) 1160d71ae5a4SJacob Faibussowitsch { 1161accc9626SMatthew G. Knepley PointDivision *div = (PointDivision *)ctx; 1162accc9626SMatthew G. Knepley PetscInt cval = val < 0 ? val - 1 : val + 1; 1163accc9626SMatthew G. Knepley const PetscInt *support; 1164accc9626SMatthew G. Knepley PetscInt supportSize, s; 1165accc9626SMatthew G. Knepley 1166accc9626SMatthew G. Knepley PetscFunctionBegin; 1167accc9626SMatthew G. Knepley PetscCall(DMPlexGetSupport(div->dm, p, &support)); 1168accc9626SMatthew G. Knepley PetscCall(DMPlexGetSupportSize(div->dm, p, &supportSize)); 1169accc9626SMatthew G. Knepley for (s = 0; s < supportSize; ++s) { 1170accc9626SMatthew G. Knepley PetscCall(DMLabelSetValue(label, support[s], cval)); 1171accc9626SMatthew G. Knepley PetscCall(DMPlexPointQueueEnqueue(div->queue, support[s])); 1172accc9626SMatthew G. Knepley } 11733ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1174accc9626SMatthew G. Knepley } 1175accc9626SMatthew G. Knepley 1176accc9626SMatthew G. Knepley /* Mark cells by label propagation */ 1177d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexLabelFaultHalo(DM dm, DMLabel faultLabel) 1178d71ae5a4SJacob Faibussowitsch { 1179accc9626SMatthew G. Knepley DMPlexPointQueue queue = NULL; 1180accc9626SMatthew G. Knepley PointDivision div; 1181accc9626SMatthew G. Knepley PetscSF pointSF; 1182accc9626SMatthew G. Knepley IS pointIS; 1183accc9626SMatthew G. Knepley const PetscInt *points; 1184accc9626SMatthew G. Knepley PetscBool empty; 1185accc9626SMatthew G. Knepley PetscInt dim, shift = 100, n, i; 1186accc9626SMatthew G. Knepley 1187accc9626SMatthew G. Knepley PetscFunctionBegin; 1188accc9626SMatthew G. Knepley PetscCall(DMGetDimension(dm, &dim)); 1189accc9626SMatthew G. Knepley PetscCall(DMPlexPointQueueCreate(1024, &queue)); 1190accc9626SMatthew G. Knepley div.dm = dm; 1191accc9626SMatthew G. Knepley div.queue = queue; 1192accc9626SMatthew G. Knepley /* Enqueue cells on fault */ 1193accc9626SMatthew G. Knepley PetscCall(DMLabelGetStratumIS(faultLabel, shift + dim, &pointIS)); 1194accc9626SMatthew G. Knepley if (pointIS) { 1195accc9626SMatthew G. Knepley PetscCall(ISGetLocalSize(pointIS, &n)); 1196accc9626SMatthew G. Knepley PetscCall(ISGetIndices(pointIS, &points)); 119748a46eb9SPierre Jolivet for (i = 0; i < n; ++i) PetscCall(DMPlexPointQueueEnqueue(queue, points[i])); 1198accc9626SMatthew G. Knepley PetscCall(ISRestoreIndices(pointIS, &points)); 1199accc9626SMatthew G. Knepley PetscCall(ISDestroy(&pointIS)); 1200accc9626SMatthew G. Knepley } 1201accc9626SMatthew G. Knepley PetscCall(DMLabelGetStratumIS(faultLabel, -(shift + dim), &pointIS)); 1202accc9626SMatthew G. Knepley if (pointIS) { 1203accc9626SMatthew G. Knepley PetscCall(ISGetLocalSize(pointIS, &n)); 1204accc9626SMatthew G. Knepley PetscCall(ISGetIndices(pointIS, &points)); 120548a46eb9SPierre Jolivet for (i = 0; i < n; ++i) PetscCall(DMPlexPointQueueEnqueue(queue, points[i])); 1206accc9626SMatthew G. Knepley PetscCall(ISRestoreIndices(pointIS, &points)); 1207accc9626SMatthew G. Knepley PetscCall(ISDestroy(&pointIS)); 1208accc9626SMatthew G. Knepley } 1209accc9626SMatthew G. Knepley 1210accc9626SMatthew G. Knepley PetscCall(DMGetPointSF(dm, &pointSF)); 1211accc9626SMatthew G. Knepley PetscCall(DMLabelPropagateBegin(faultLabel, pointSF)); 1212accc9626SMatthew G. Knepley /* While edge queue is not empty: */ 1213accc9626SMatthew G. Knepley PetscCall(DMPlexPointQueueEmptyCollective((PetscObject)dm, queue, &empty)); 1214accc9626SMatthew G. Knepley while (!empty) { 1215accc9626SMatthew G. Knepley PetscCall(DivideCells_Private(dm, faultLabel, queue)); 1216accc9626SMatthew G. Knepley PetscCall(DMLabelPropagatePush(faultLabel, pointSF, divideCell, &div)); 1217accc9626SMatthew G. Knepley PetscCall(DMPlexPointQueueEmptyCollective((PetscObject)dm, queue, &empty)); 1218accc9626SMatthew G. Knepley } 1219accc9626SMatthew G. Knepley PetscCall(DMLabelPropagateEnd(faultLabel, pointSF)); 1220accc9626SMatthew G. Knepley PetscCall(DMPlexPointQueueDestroy(&queue)); 12213ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1222accc9626SMatthew G. Knepley } 1223accc9626SMatthew G. Knepley 1224607ab7a9SMatthew G. Knepley /* 1225faedd622SMatthew G. Knepley We are adding three kinds of points here: 1226607ab7a9SMatthew G. Knepley Replicated: Copies of points which exist in the mesh, such as vertices identified across a fault 1227faedd622SMatthew G. Knepley Non-replicated: Points which exist on the fault, but are not replicated 1228b6dfa339SMatthew G. Knepley Ghost: These are shared fault faces which are not owned by this process. These do not produce hybrid cells and do not replicate 1229607ab7a9SMatthew G. Knepley Hybrid: Entirely new points, such as cohesive cells 1230a6ae58d1SMatthew G. Knepley 1231a6ae58d1SMatthew G. Knepley When creating subsequent cohesive cells, we shift the old hybrid cells to the end of the numbering at 1232a6ae58d1SMatthew G. Knepley each depth so that the new split/hybrid points can be inserted as a block. 1233607ab7a9SMatthew G. Knepley */ 1234d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexConstructCohesiveCells_Internal(DM dm, DMLabel label, DMLabel splitLabel, DM sdm) 1235d71ae5a4SJacob Faibussowitsch { 1236cd0c2139SMatthew G Knepley MPI_Comm comm; 1237607ab7a9SMatthew G. Knepley IS valueIS; 1238607ab7a9SMatthew G. Knepley PetscInt numSP = 0; /* The number of depths for which we have replicated points */ 1239607ab7a9SMatthew G. Knepley const PetscInt *values; /* List of depths for which we have replicated points */ 124018c5995bSMatthew G. Knepley IS *splitIS; 124118c5995bSMatthew G. Knepley IS *unsplitIS; 1242b6dfa339SMatthew G. Knepley IS ghostIS; 1243607ab7a9SMatthew G. Knepley PetscInt *numSplitPoints; /* The number of replicated points at each depth */ 124418c5995bSMatthew G. Knepley PetscInt *numUnsplitPoints; /* The number of non-replicated points at each depth which still give rise to hybrid points */ 124536dbac82SMatthew G. Knepley PetscInt *numHybridPoints; /* The number of new hybrid points at each depth */ 124636dbac82SMatthew G. Knepley PetscInt *numHybridPointsOld; /* The number of existing hybrid points at each depth */ 1247b6dfa339SMatthew G. Knepley PetscInt numGhostPoints; /* The number of unowned, shared fault faces */ 1248607ab7a9SMatthew G. Knepley const PetscInt **splitPoints; /* Replicated points for each depth */ 124918c5995bSMatthew G. Knepley const PetscInt **unsplitPoints; /* Non-replicated points for each depth */ 1250b6dfa339SMatthew G. Knepley const PetscInt *ghostPoints; /* Ghost fault faces */ 1251cd0c2139SMatthew G Knepley PetscSection coordSection; 1252cd0c2139SMatthew G Knepley Vec coordinates; 1253cd0c2139SMatthew G Knepley PetscScalar *coords; 1254a6ae58d1SMatthew G. Knepley PetscInt *depthMax; /* The first hybrid point at each depth in the original mesh */ 1255a6ae58d1SMatthew G. Knepley PetscInt *depthEnd; /* The point limit at each depth in the original mesh */ 1256607ab7a9SMatthew G. Knepley PetscInt *depthShift; /* Number of replicated+hybrid points at each depth */ 1257607ab7a9SMatthew G. Knepley PetscInt *pMaxNew; /* The first replicated point at each depth in the new mesh, hybrids come after this */ 1258607ab7a9SMatthew G. Knepley PetscInt *coneNew, *coneONew, *supportNew; 125918c5995bSMatthew G. Knepley PetscInt shift = 100, shift2 = 200, depth = 0, dep, dim, d, sp, maxConeSize, maxSupportSize, maxConeSizeNew, maxSupportSizeNew, numLabels, vStart, vEnd, pEnd, p, v; 1260cd0c2139SMatthew G Knepley 1261cd0c2139SMatthew G Knepley PetscFunctionBegin; 12629566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)dm, &comm)); 12639566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 12649566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepth(dm, &depth)); 12659566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthStratum(dm, 0, &vStart, &vEnd)); 1266412e9a14SMatthew G. Knepley /* We do not want this label automatically computed, instead we compute it here */ 12679566063dSJacob Faibussowitsch PetscCall(DMCreateLabel(sdm, "celltype")); 1268cd0c2139SMatthew G Knepley /* Count split points and add cohesive cells */ 12699566063dSJacob Faibussowitsch PetscCall(DMPlexGetMaxSizes(dm, &maxConeSize, &maxSupportSize)); 12709566063dSJacob Faibussowitsch PetscCall(PetscMalloc5(depth + 1, &depthMax, depth + 1, &depthEnd, 2 * (depth + 1), &depthShift, depth + 1, &pMaxNew, depth + 1, &numHybridPointsOld)); 12719566063dSJacob Faibussowitsch PetscCall(PetscMalloc7(depth + 1, &splitIS, depth + 1, &unsplitIS, depth + 1, &numSplitPoints, depth + 1, &numUnsplitPoints, depth + 1, &numHybridPoints, depth + 1, &splitPoints, depth + 1, &unsplitPoints)); 1272607ab7a9SMatthew G. Knepley for (d = 0; d <= depth; ++d) { 12739566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthStratum(dm, d, NULL, &pMaxNew[d])); 12749566063dSJacob Faibussowitsch PetscCall(DMPlexGetTensorPrismBounds_Internal(dm, d, &depthMax[d], NULL)); 1275a6ae58d1SMatthew G. Knepley depthEnd[d] = pMaxNew[d]; 1276a6ae58d1SMatthew G. Knepley depthMax[d] = depthMax[d] < 0 ? depthEnd[d] : depthMax[d]; 1277607ab7a9SMatthew G. Knepley numSplitPoints[d] = 0; 127818c5995bSMatthew G. Knepley numUnsplitPoints[d] = 0; 1279607ab7a9SMatthew G. Knepley numHybridPoints[d] = 0; 1280a6ae58d1SMatthew G. Knepley numHybridPointsOld[d] = depthMax[d] < 0 ? 0 : depthEnd[d] - depthMax[d]; 1281607ab7a9SMatthew G. Knepley splitPoints[d] = NULL; 128218c5995bSMatthew G. Knepley unsplitPoints[d] = NULL; 128318c5995bSMatthew G. Knepley splitIS[d] = NULL; 128418c5995bSMatthew G. Knepley unsplitIS[d] = NULL; 128559eef20bSToby Isaac /* we are shifting the existing hybrid points with the stratum behind them, so 128659eef20bSToby Isaac * the split comes at the end of the normal points, i.e., at depthMax[d] */ 128759eef20bSToby Isaac depthShift[2 * d] = depthMax[d]; 128859eef20bSToby Isaac depthShift[2 * d + 1] = 0; 1289607ab7a9SMatthew G. Knepley } 1290b6dfa339SMatthew G. Knepley numGhostPoints = 0; 1291b6dfa339SMatthew G. Knepley ghostPoints = NULL; 1292cd0c2139SMatthew G Knepley if (label) { 12939566063dSJacob Faibussowitsch PetscCall(DMLabelGetValueIS(label, &valueIS)); 12949566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(valueIS, &numSP)); 12959566063dSJacob Faibussowitsch PetscCall(ISGetIndices(valueIS, &values)); 1296cd0c2139SMatthew G Knepley } 1297cd0c2139SMatthew G Knepley for (sp = 0; sp < numSP; ++sp) { 1298cd0c2139SMatthew G Knepley const PetscInt dep = values[sp]; 1299cd0c2139SMatthew G Knepley 1300cd0c2139SMatthew G Knepley if ((dep < 0) || (dep > depth)) continue; 13019566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(label, dep, &splitIS[dep])); 130218c5995bSMatthew G. Knepley if (splitIS[dep]) { 13039566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(splitIS[dep], &numSplitPoints[dep])); 13049566063dSJacob Faibussowitsch PetscCall(ISGetIndices(splitIS[dep], &splitPoints[dep])); 130518c5995bSMatthew G. Knepley } 13069566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(label, shift2 + dep, &unsplitIS[dep])); 130718c5995bSMatthew G. Knepley if (unsplitIS[dep]) { 13089566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(unsplitIS[dep], &numUnsplitPoints[dep])); 13099566063dSJacob Faibussowitsch PetscCall(ISGetIndices(unsplitIS[dep], &unsplitPoints[dep])); 1310cd0c2139SMatthew G Knepley } 1311cd0c2139SMatthew G Knepley } 1312b6dfa339SMatthew G. Knepley PetscCall(DMLabelGetStratumIS(label, shift2 + dim - 1, &ghostIS)); 1313b6dfa339SMatthew G. Knepley if (ghostIS) { 1314b6dfa339SMatthew G. Knepley PetscCall(ISGetLocalSize(ghostIS, &numGhostPoints)); 1315b6dfa339SMatthew G. Knepley PetscCall(ISGetIndices(ghostIS, &ghostPoints)); 1316b6dfa339SMatthew G. Knepley } 1317607ab7a9SMatthew G. Knepley /* Calculate number of hybrid points */ 131818c5995bSMatthew G. Knepley for (d = 1; d <= depth; ++d) numHybridPoints[d] = numSplitPoints[d - 1] + numUnsplitPoints[d - 1]; /* There is a hybrid cell/face/edge for every split face/edge/vertex */ 13192582d50cSToby Isaac for (d = 0; d <= depth; ++d) depthShift[2 * d + 1] = numSplitPoints[d] + numHybridPoints[d]; 13209566063dSJacob Faibussowitsch PetscCall(DMPlexShiftPointSetUp_Internal(depth, depthShift)); 132159eef20bSToby Isaac /* the end of the points in this stratum that come before the new points: 132259eef20bSToby Isaac * shifting pMaxNew[d] gets the new start of the next stratum, then count back the old hybrid points and the newly 132359eef20bSToby Isaac * added points */ 13242582d50cSToby Isaac for (d = 0; d <= depth; ++d) pMaxNew[d] = DMPlexShiftPoint_Internal(pMaxNew[d], depth, depthShift) - (numHybridPointsOld[d] + numSplitPoints[d] + numHybridPoints[d]); 13259566063dSJacob Faibussowitsch PetscCall(DMPlexShiftSizes_Internal(dm, depthShift, sdm)); 1326cd0c2139SMatthew G Knepley /* Step 3: Set cone/support sizes for new points */ 1327cd0c2139SMatthew G Knepley for (dep = 0; dep <= depth; ++dep) { 1328cd0c2139SMatthew G Knepley for (p = 0; p < numSplitPoints[dep]; ++p) { 1329cd0c2139SMatthew G Knepley const PetscInt oldp = splitPoints[dep][p]; 13302582d50cSToby Isaac const PetscInt newp = DMPlexShiftPoint_Internal(oldp, depth, depthShift) /*oldp + depthOffset[dep]*/; 13314c367dbcSMatthew G. Knepley const PetscInt splitp = p + pMaxNew[dep]; 1332cd0c2139SMatthew G Knepley const PetscInt *support; 1333394c2f0fSMatthew G. Knepley DMPolytopeType ct; 13344c367dbcSMatthew G. Knepley PetscInt coneSize, supportSize, qf, qn, qp, e; 1335cd0c2139SMatthew G Knepley 13369566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, oldp, &coneSize)); 13379566063dSJacob Faibussowitsch PetscCall(DMPlexSetConeSize(sdm, splitp, coneSize)); 13389566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dm, oldp, &supportSize)); 13399566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupportSize(sdm, splitp, supportSize)); 13409566063dSJacob Faibussowitsch PetscCall(DMPlexGetCellType(dm, oldp, &ct)); 13419566063dSJacob Faibussowitsch PetscCall(DMPlexSetCellType(sdm, splitp, ct)); 1342cd0c2139SMatthew G Knepley if (dep == depth - 1) { 13434c367dbcSMatthew G. Knepley const PetscInt hybcell = p + pMaxNew[dep + 1] + numSplitPoints[dep + 1]; 13444c367dbcSMatthew G. Knepley 1345cd0c2139SMatthew G Knepley /* Add cohesive cells, they are prisms */ 13469566063dSJacob Faibussowitsch PetscCall(DMPlexSetConeSize(sdm, hybcell, 2 + coneSize)); 1347412e9a14SMatthew G. Knepley switch (coneSize) { 1348d71ae5a4SJacob Faibussowitsch case 2: 1349d71ae5a4SJacob Faibussowitsch PetscCall(DMPlexSetCellType(sdm, hybcell, DM_POLYTOPE_SEG_PRISM_TENSOR)); 1350d71ae5a4SJacob Faibussowitsch break; 1351d71ae5a4SJacob Faibussowitsch case 3: 1352d71ae5a4SJacob Faibussowitsch PetscCall(DMPlexSetCellType(sdm, hybcell, DM_POLYTOPE_TRI_PRISM_TENSOR)); 1353d71ae5a4SJacob Faibussowitsch break; 1354d71ae5a4SJacob Faibussowitsch case 4: 1355d71ae5a4SJacob Faibussowitsch PetscCall(DMPlexSetCellType(sdm, hybcell, DM_POLYTOPE_QUAD_PRISM_TENSOR)); 1356d71ae5a4SJacob Faibussowitsch break; 1357412e9a14SMatthew G. Knepley } 1358b6dfa339SMatthew G. Knepley /* Shared fault faces with only one support cell now have two with the cohesive cell */ 1359b6dfa339SMatthew G. Knepley /* TODO Check thaat oldp has rootdegree == 1 */ 1360b6dfa339SMatthew G. Knepley if (supportSize == 1) { 1361b6dfa339SMatthew G. Knepley const PetscInt *support; 1362b6dfa339SMatthew G. Knepley PetscInt val; 1363b6dfa339SMatthew G. Knepley 1364b6dfa339SMatthew G. Knepley PetscCall(DMPlexGetSupport(dm, oldp, &support)); 1365b6dfa339SMatthew G. Knepley PetscCall(DMLabelGetValue(label, support[0], &val)); 1366b6dfa339SMatthew G. Knepley if (val < 0) PetscCall(DMPlexSetSupportSize(sdm, splitp, 2)); 1367b6dfa339SMatthew G. Knepley else PetscCall(DMPlexSetSupportSize(sdm, newp, 2)); 1368b6dfa339SMatthew G. Knepley } 1369cd0c2139SMatthew G Knepley } else if (dep == 0) { 13704c367dbcSMatthew G. Knepley const PetscInt hybedge = p + pMaxNew[dep + 1] + numSplitPoints[dep + 1]; 1371cd0c2139SMatthew G Knepley 13729566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(dm, oldp, &support)); 13734c367dbcSMatthew G. Knepley for (e = 0, qn = 0, qp = 0, qf = 0; e < supportSize; ++e) { 1374cd0c2139SMatthew G Knepley PetscInt val; 1375cd0c2139SMatthew G Knepley 13769566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, support[e], &val)); 13774c367dbcSMatthew G. Knepley if (val == 1) ++qf; 13784c367dbcSMatthew G. Knepley if ((val == 1) || (val == (shift + 1))) ++qn; 13794c367dbcSMatthew G. Knepley if ((val == 1) || (val == -(shift + 1))) ++qp; 1380cd0c2139SMatthew G Knepley } 13814c367dbcSMatthew G. Knepley /* Split old vertex: Edges into original vertex and new cohesive edge */ 13829566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupportSize(sdm, newp, qn + 1)); 13834c367dbcSMatthew G. Knepley /* Split new vertex: Edges into split vertex and new cohesive edge */ 13849566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupportSize(sdm, splitp, qp + 1)); 13854c367dbcSMatthew G. Knepley /* Add hybrid edge */ 13869566063dSJacob Faibussowitsch PetscCall(DMPlexSetConeSize(sdm, hybedge, 2)); 13879566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupportSize(sdm, hybedge, qf)); 13889566063dSJacob Faibussowitsch PetscCall(DMPlexSetCellType(sdm, hybedge, DM_POLYTOPE_POINT_PRISM_TENSOR)); 1389cd0c2139SMatthew G Knepley } else if (dep == dim - 2) { 13904c367dbcSMatthew G. Knepley const PetscInt hybface = p + pMaxNew[dep + 1] + numSplitPoints[dep + 1]; 13914c367dbcSMatthew G. Knepley 13929566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(dm, oldp, &support)); 13934c367dbcSMatthew G. Knepley for (e = 0, qn = 0, qp = 0, qf = 0; e < supportSize; ++e) { 1394cd0c2139SMatthew G Knepley PetscInt val; 1395cd0c2139SMatthew G Knepley 13969566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, support[e], &val)); 13974c367dbcSMatthew G. Knepley if (val == dim - 1) ++qf; 13984c367dbcSMatthew G. Knepley if ((val == dim - 1) || (val == (shift + dim - 1))) ++qn; 13994c367dbcSMatthew G. Knepley if ((val == dim - 1) || (val == -(shift + dim - 1))) ++qp; 1400cd0c2139SMatthew G Knepley } 14014c367dbcSMatthew G. Knepley /* Split old edge: Faces into original edge and cohesive face (positive side?) */ 14029566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupportSize(sdm, newp, qn + 1)); 14034c367dbcSMatthew G. Knepley /* Split new edge: Faces into split edge and cohesive face (negative side?) */ 14049566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupportSize(sdm, splitp, qp + 1)); 14054c367dbcSMatthew G. Knepley /* Add hybrid face */ 14069566063dSJacob Faibussowitsch PetscCall(DMPlexSetConeSize(sdm, hybface, 4)); 14079566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupportSize(sdm, hybface, qf)); 14089566063dSJacob Faibussowitsch PetscCall(DMPlexSetCellType(sdm, hybface, DM_POLYTOPE_SEG_PRISM_TENSOR)); 1409cd0c2139SMatthew G Knepley } 1410cd0c2139SMatthew G Knepley } 1411cd0c2139SMatthew G Knepley } 141218c5995bSMatthew G. Knepley for (dep = 0; dep <= depth; ++dep) { 141318c5995bSMatthew G. Knepley for (p = 0; p < numUnsplitPoints[dep]; ++p) { 141418c5995bSMatthew G. Knepley const PetscInt oldp = unsplitPoints[dep][p]; 14152582d50cSToby Isaac const PetscInt newp = DMPlexShiftPoint_Internal(oldp, depth, depthShift) /*oldp + depthOffset[dep]*/; 141618c5995bSMatthew G. Knepley const PetscInt *support; 1417da1dd7e4SMatthew G. Knepley PetscInt coneSize, supportSize, qf, e, s; 141818c5995bSMatthew G. Knepley 14199566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, oldp, &coneSize)); 14209566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dm, oldp, &supportSize)); 14219566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(dm, oldp, &support)); 142218c5995bSMatthew G. Knepley if (dep == 0) { 142318c5995bSMatthew G. Knepley const PetscInt hybedge = p + pMaxNew[dep + 1] + numSplitPoints[dep + 1] + numSplitPoints[dep]; 142418c5995bSMatthew G. Knepley 142539254ff6SMatthew G. Knepley /* Unsplit vertex: Edges into original vertex, split edges, and new cohesive edge twice */ 142639254ff6SMatthew G. Knepley for (s = 0, qf = 0; s < supportSize; ++s, ++qf) { 14279566063dSJacob Faibussowitsch PetscCall(PetscFindInt(support[s], numSplitPoints[dep + 1], splitPoints[dep + 1], &e)); 142839254ff6SMatthew G. Knepley if (e >= 0) ++qf; 142939254ff6SMatthew G. Knepley } 14309566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupportSize(sdm, newp, qf + 2)); 143118c5995bSMatthew G. Knepley /* Add hybrid edge */ 14329566063dSJacob Faibussowitsch PetscCall(DMPlexSetConeSize(sdm, hybedge, 2)); 1433e1757548SMatthew G. Knepley for (e = 0, qf = 0; e < supportSize; ++e) { 1434e1757548SMatthew G. Knepley PetscInt val; 1435e1757548SMatthew G. Knepley 14369566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, support[e], &val)); 1437e1757548SMatthew G. Knepley /* Split and unsplit edges produce hybrid faces */ 1438da1dd7e4SMatthew G. Knepley if (val == 1) ++qf; 1439da1dd7e4SMatthew G. Knepley if (val == (shift2 + 1)) ++qf; 1440e1757548SMatthew G. Knepley } 14419566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupportSize(sdm, hybedge, qf)); 14429566063dSJacob Faibussowitsch PetscCall(DMPlexSetCellType(sdm, hybedge, DM_POLYTOPE_POINT_PRISM_TENSOR)); 144318c5995bSMatthew G. Knepley } else if (dep == dim - 2) { 144418c5995bSMatthew G. Knepley const PetscInt hybface = p + pMaxNew[dep + 1] + numSplitPoints[dep + 1] + numSplitPoints[dep]; 1445cd0c2139SMatthew G Knepley PetscInt val; 1446cd0c2139SMatthew G Knepley 1447da1dd7e4SMatthew G. Knepley for (e = 0, qf = 0; e < supportSize; ++e) { 14489566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, support[e], &val)); 1449da1dd7e4SMatthew G. Knepley if (val == dim - 1) qf += 2; 1450da1dd7e4SMatthew G. Knepley else ++qf; 1451cd0c2139SMatthew G Knepley } 145218c5995bSMatthew G. Knepley /* Unsplit edge: Faces into original edge, split face, and cohesive face twice */ 14539566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupportSize(sdm, newp, qf + 2)); 145418c5995bSMatthew G. Knepley /* Add hybrid face */ 1455da1dd7e4SMatthew G. Knepley for (e = 0, qf = 0; e < supportSize; ++e) { 14569566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, support[e], &val)); 1457da1dd7e4SMatthew G. Knepley if (val == dim - 1) ++qf; 1458da1dd7e4SMatthew G. Knepley } 14599566063dSJacob Faibussowitsch PetscCall(DMPlexSetConeSize(sdm, hybface, 4)); 14609566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupportSize(sdm, hybface, qf)); 14619566063dSJacob Faibussowitsch PetscCall(DMPlexSetCellType(sdm, hybface, DM_POLYTOPE_SEG_PRISM_TENSOR)); 1462cd0c2139SMatthew G Knepley } 1463cd0c2139SMatthew G Knepley } 1464cd0c2139SMatthew G Knepley } 1465cd0c2139SMatthew G Knepley /* Step 4: Setup split DM */ 14669566063dSJacob Faibussowitsch PetscCall(DMSetUp(sdm)); 14679566063dSJacob Faibussowitsch PetscCall(DMPlexShiftPoints_Internal(dm, depthShift, sdm)); 14689566063dSJacob Faibussowitsch PetscCall(DMPlexGetMaxSizes(sdm, &maxConeSizeNew, &maxSupportSizeNew)); 14699566063dSJacob Faibussowitsch PetscCall(PetscMalloc3(PetscMax(maxConeSize, maxConeSizeNew) * 3, &coneNew, PetscMax(maxConeSize, maxConeSizeNew) * 3, &coneONew, PetscMax(maxSupportSize, maxSupportSizeNew), &supportNew)); 1470cd0c2139SMatthew G Knepley /* Step 6: Set cones and supports for new points */ 1471cd0c2139SMatthew G Knepley for (dep = 0; dep <= depth; ++dep) { 1472cd0c2139SMatthew G Knepley for (p = 0; p < numSplitPoints[dep]; ++p) { 1473cd0c2139SMatthew G Knepley const PetscInt oldp = splitPoints[dep][p]; 14742582d50cSToby Isaac const PetscInt newp = DMPlexShiftPoint_Internal(oldp, depth, depthShift) /*oldp + depthOffset[dep]*/; 14754c367dbcSMatthew G. Knepley const PetscInt splitp = p + pMaxNew[dep]; 1476cd0c2139SMatthew G Knepley const PetscInt *cone, *support, *ornt; 1477b5a892a1SMatthew G. Knepley DMPolytopeType ct; 14784c367dbcSMatthew G. Knepley PetscInt coneSize, supportSize, q, qf, qn, qp, v, e, s; 1479cd0c2139SMatthew G Knepley 14809566063dSJacob Faibussowitsch PetscCall(DMPlexGetCellType(dm, oldp, &ct)); 14819566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, oldp, &coneSize)); 14829566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, oldp, &cone)); 14839566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeOrientation(dm, oldp, &ornt)); 14849566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dm, oldp, &supportSize)); 14859566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(dm, oldp, &support)); 1486cd0c2139SMatthew G Knepley if (dep == depth - 1) { 148796a07cd0SMatthew G. Knepley PetscBool hasUnsplit = PETSC_FALSE; 14884c367dbcSMatthew G. Knepley const PetscInt hybcell = p + pMaxNew[dep + 1] + numSplitPoints[dep + 1]; 1489cd0c2139SMatthew G Knepley const PetscInt *supportF; 1490cd0c2139SMatthew G Knepley 1491b6dfa339SMatthew G. Knepley coneONew[0] = coneONew[1] = -1000; 1492cd0c2139SMatthew G Knepley /* Split face: copy in old face to new face to start */ 14939566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(sdm, newp, &supportF)); 14949566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupport(sdm, splitp, supportF)); 1495cd0c2139SMatthew G Knepley /* Split old face: old vertices/edges in cone so no change */ 1496cd0c2139SMatthew G Knepley /* Split new face: new vertices/edges in cone */ 1497cd0c2139SMatthew G Knepley for (q = 0; q < coneSize; ++q) { 14989566063dSJacob Faibussowitsch PetscCall(PetscFindInt(cone[q], numSplitPoints[dep - 1], splitPoints[dep - 1], &v)); 149918c5995bSMatthew G. Knepley if (v < 0) { 15009566063dSJacob Faibussowitsch PetscCall(PetscFindInt(cone[q], numUnsplitPoints[dep - 1], unsplitPoints[dep - 1], &v)); 150163a3b9bcSJacob Faibussowitsch PetscCheck(v >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Could not locate point %" PetscInt_FMT " in split or unsplit points of depth %" PetscInt_FMT, cone[q], dep - 1); 15022582d50cSToby Isaac coneNew[2 + q] = DMPlexShiftPoint_Internal(cone[q], depth, depthShift) /*cone[q] + depthOffset[dep-1]*/; 150396a07cd0SMatthew G. Knepley hasUnsplit = PETSC_TRUE; 150418c5995bSMatthew G. Knepley } else { 15054c367dbcSMatthew G. Knepley coneNew[2 + q] = v + pMaxNew[dep - 1]; 1506163235baSMatthew G. Knepley if (dep > 1) { 1507163235baSMatthew G. Knepley const PetscInt *econe; 1508163235baSMatthew G. Knepley PetscInt econeSize, r, vs, vu; 1509163235baSMatthew G. Knepley 15109566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, cone[q], &econeSize)); 15119566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, cone[q], &econe)); 1512163235baSMatthew G. Knepley for (r = 0; r < econeSize; ++r) { 15139566063dSJacob Faibussowitsch PetscCall(PetscFindInt(econe[r], numSplitPoints[dep - 2], splitPoints[dep - 2], &vs)); 15149566063dSJacob Faibussowitsch PetscCall(PetscFindInt(econe[r], numUnsplitPoints[dep - 2], unsplitPoints[dep - 2], &vu)); 1515163235baSMatthew G. Knepley if (vs >= 0) continue; 151663a3b9bcSJacob Faibussowitsch PetscCheck(vu >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Could not locate point %" PetscInt_FMT " in split or unsplit points of depth %" PetscInt_FMT, econe[r], dep - 2); 1517163235baSMatthew G. Knepley hasUnsplit = PETSC_TRUE; 1518163235baSMatthew G. Knepley } 1519163235baSMatthew G. Knepley } 1520cd0c2139SMatthew G Knepley } 1521cd0c2139SMatthew G Knepley } 15229566063dSJacob Faibussowitsch PetscCall(DMPlexSetCone(sdm, splitp, &coneNew[2])); 15239566063dSJacob Faibussowitsch PetscCall(DMPlexSetConeOrientation(sdm, splitp, ornt)); 1524e537020bSMatthew G. Knepley /* Face support */ 1525b6dfa339SMatthew G. Knepley PetscInt vals[2]; 1526cd0c2139SMatthew G Knepley 1527b6dfa339SMatthew G. Knepley PetscCall(DMLabelGetValue(label, support[0], &vals[0])); 1528b6dfa339SMatthew G. Knepley if (supportSize > 1) PetscCall(DMLabelGetValue(label, support[1], &vals[1])); 1529b6dfa339SMatthew G. Knepley else vals[1] = -vals[0]; 1530b6dfa339SMatthew G. Knepley PetscCheck(vals[0] * vals[1] < 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid support labels %" PetscInt_FMT " %" PetscInt_FMT, vals[0], vals[1]); 1531b6dfa339SMatthew G. Knepley 1532b6dfa339SMatthew G. Knepley for (s = 0; s < 2; ++s) { 1533b6dfa339SMatthew G. Knepley if (s >= supportSize) { 1534b6dfa339SMatthew G. Knepley if (vals[s] < 0) { 1535b6dfa339SMatthew G. Knepley /* Ghost old face: Replace negative side cell with cohesive cell */ 1536accc9626SMatthew G. Knepley PetscCall(DMPlexInsertSupport(sdm, newp, s, hybcell)); 1537b6dfa339SMatthew G. Knepley } else { 1538b6dfa339SMatthew G. Knepley /* Ghost new face: Replace positive side cell with cohesive cell */ 1539accc9626SMatthew G. Knepley PetscCall(DMPlexInsertSupport(sdm, splitp, s, hybcell)); 1540b6dfa339SMatthew G. Knepley } 1541b6dfa339SMatthew G. Knepley } else { 1542b6dfa339SMatthew G. Knepley if (vals[s] < 0) { 1543cd0c2139SMatthew G Knepley /* Split old face: Replace negative side cell with cohesive cell */ 15449566063dSJacob Faibussowitsch PetscCall(DMPlexInsertSupport(sdm, newp, s, hybcell)); 1545cd0c2139SMatthew G Knepley } else { 1546cd0c2139SMatthew G Knepley /* Split new face: Replace positive side cell with cohesive cell */ 15479566063dSJacob Faibussowitsch PetscCall(DMPlexInsertSupport(sdm, splitp, s, hybcell)); 1548b6dfa339SMatthew G. Knepley } 1549b6dfa339SMatthew G. Knepley } 1550b6dfa339SMatthew G. Knepley } 1551b6dfa339SMatthew G. Knepley /* Get orientation for cohesive face using the positive side cell */ 1552e537020bSMatthew G. Knepley { 1553e537020bSMatthew G. Knepley const PetscInt *ncone, *nconeO; 1554b6dfa339SMatthew G. Knepley PetscInt nconeSize, nc, ocell; 1555accc9626SMatthew G. Knepley PetscBool flip = PETSC_FALSE; 1556e537020bSMatthew G. Knepley 15579371c9d4SSatish Balay if (supportSize > 1) { 15589371c9d4SSatish Balay ocell = vals[0] < 0 ? support[1] : support[0]; 15599371c9d4SSatish Balay } else { 15609371c9d4SSatish Balay ocell = support[0]; 15619371c9d4SSatish Balay flip = vals[0] < 0 ? PETSC_TRUE : PETSC_FALSE; 15629371c9d4SSatish Balay } 1563b6dfa339SMatthew G. Knepley PetscCall(DMPlexGetConeSize(dm, ocell, &nconeSize)); 1564b6dfa339SMatthew G. Knepley PetscCall(DMPlexGetCone(dm, ocell, &ncone)); 1565e1a13daeSMatthew G. Knepley PetscCall(DMPlexGetConeOrientation(dm, ocell, &nconeO)); 1566e537020bSMatthew G. Knepley for (nc = 0; nc < nconeSize; ++nc) { 1567e537020bSMatthew G. Knepley if (ncone[nc] == oldp) { 1568b6dfa339SMatthew G. Knepley coneONew[0] = flip ? -(nconeO[nc] + 1) : nconeO[nc]; 1569e537020bSMatthew G. Knepley break; 1570cd0c2139SMatthew G Knepley } 1571cd0c2139SMatthew G Knepley } 1572b6dfa339SMatthew G. Knepley PetscCheck(nc < nconeSize, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Could not locate face %" PetscInt_FMT " in neighboring cell %" PetscInt_FMT, oldp, ocell); 1573e537020bSMatthew G. Knepley } 15744c367dbcSMatthew G. Knepley /* Cohesive cell: Old and new split face, then new cohesive faces */ 1575b6dfa339SMatthew G. Knepley { 1576b6dfa339SMatthew G. Knepley const PetscInt No = DMPolytopeTypeGetNumArrangments(ct) / 2; 1577b6dfa339SMatthew G. Knepley PetscCheck((coneONew[0] >= -No) && (coneONew[0] < No), PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid %s orientation %" PetscInt_FMT, DMPolytopeTypes[ct], coneONew[0]); 1578b6dfa339SMatthew G. Knepley } 1579b5a892a1SMatthew G. Knepley const PetscInt *arr = DMPolytopeTypeGetArrangment(ct, coneONew[0]); 1580b5a892a1SMatthew G. Knepley 1581fd4b9f15SMatthew G. Knepley coneNew[0] = newp; /* Extracted negative side orientation above */ 15824c367dbcSMatthew G. Knepley coneNew[1] = splitp; 15834c367dbcSMatthew G. Knepley coneONew[1] = coneONew[0]; 1584e537020bSMatthew G. Knepley for (q = 0; q < coneSize; ++q) { 1585412e9a14SMatthew G. Knepley /* Hybrid faces must follow order from oriented end face */ 1586b5a892a1SMatthew G. Knepley const PetscInt qa = arr[q * 2 + 0]; 1587b5a892a1SMatthew G. Knepley const PetscInt qo = arr[q * 2 + 1]; 1588b5a892a1SMatthew G. Knepley DMPolytopeType ft = dep == 2 ? DM_POLYTOPE_SEGMENT : DM_POLYTOPE_POINT; 1589412e9a14SMatthew G. Knepley 15909566063dSJacob Faibussowitsch PetscCall(PetscFindInt(cone[qa], numSplitPoints[dep - 1], splitPoints[dep - 1], &v)); 159118c5995bSMatthew G. Knepley if (v < 0) { 15929566063dSJacob Faibussowitsch PetscCall(PetscFindInt(cone[qa], numUnsplitPoints[dep - 1], unsplitPoints[dep - 1], &v)); 159318c5995bSMatthew G. Knepley coneNew[2 + q] = v + pMaxNew[dep] + numSplitPoints[dep] + numSplitPoints[dep - 1]; 159418c5995bSMatthew G. Knepley } else { 159518c5995bSMatthew G. Knepley coneNew[2 + q] = v + pMaxNew[dep] + numSplitPoints[dep]; 159618c5995bSMatthew G. Knepley } 1597b5a892a1SMatthew G. Knepley coneONew[2 + q] = DMPolytopeTypeComposeOrientation(ft, qo, ornt[qa]); 1598e537020bSMatthew G. Knepley } 15999566063dSJacob Faibussowitsch PetscCall(DMPlexSetCone(sdm, hybcell, coneNew)); 16009566063dSJacob Faibussowitsch PetscCall(DMPlexSetConeOrientation(sdm, hybcell, coneONew)); 160196a07cd0SMatthew G. Knepley /* Label the hybrid cells on the boundary of the split */ 16029566063dSJacob Faibussowitsch if (hasUnsplit) PetscCall(DMLabelSetValue(label, -hybcell, dim)); 1603cd0c2139SMatthew G Knepley } else if (dep == 0) { 16044c367dbcSMatthew G. Knepley const PetscInt hybedge = p + pMaxNew[dep + 1] + numSplitPoints[dep + 1]; 1605cd0c2139SMatthew G Knepley 1606cd0c2139SMatthew G Knepley /* Split old vertex: Edges in old split faces and new cohesive edge */ 16074c367dbcSMatthew G. Knepley for (e = 0, qn = 0; e < supportSize; ++e) { 1608cd0c2139SMatthew G Knepley PetscInt val; 1609cd0c2139SMatthew G Knepley 16109566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, support[e], &val)); 1611ad540459SPierre Jolivet if ((val == 1) || (val == (shift + 1))) supportNew[qn++] = DMPlexShiftPoint_Internal(support[e], depth, depthShift) /*support[e] + depthOffset[dep+1]*/; 1612cd0c2139SMatthew G Knepley } 16134c367dbcSMatthew G. Knepley supportNew[qn] = hybedge; 16149566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupport(sdm, newp, supportNew)); 1615cd0c2139SMatthew G Knepley /* Split new vertex: Edges in new split faces and new cohesive edge */ 16164c367dbcSMatthew G. Knepley for (e = 0, qp = 0; e < supportSize; ++e) { 1617cd0c2139SMatthew G Knepley PetscInt val, edge; 1618cd0c2139SMatthew G Knepley 16199566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, support[e], &val)); 1620cd0c2139SMatthew G Knepley if (val == 1) { 16219566063dSJacob Faibussowitsch PetscCall(PetscFindInt(support[e], numSplitPoints[dep + 1], splitPoints[dep + 1], &edge)); 162263a3b9bcSJacob Faibussowitsch PetscCheck(edge >= 0, comm, PETSC_ERR_ARG_WRONG, "Edge %" PetscInt_FMT " is not a split edge", support[e]); 16234c367dbcSMatthew G. Knepley supportNew[qp++] = edge + pMaxNew[dep + 1]; 1624cd0c2139SMatthew G Knepley } else if (val == -(shift + 1)) { 16252582d50cSToby Isaac supportNew[qp++] = DMPlexShiftPoint_Internal(support[e], depth, depthShift) /*support[e] + depthOffset[dep+1]*/; 1626cd0c2139SMatthew G Knepley } 1627cd0c2139SMatthew G Knepley } 16284c367dbcSMatthew G. Knepley supportNew[qp] = hybedge; 16299566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupport(sdm, splitp, supportNew)); 16304c367dbcSMatthew G. Knepley /* Hybrid edge: Old and new split vertex */ 1631cd0c2139SMatthew G Knepley coneNew[0] = newp; 1632cd0c2139SMatthew G Knepley coneNew[1] = splitp; 16339566063dSJacob Faibussowitsch PetscCall(DMPlexSetCone(sdm, hybedge, coneNew)); 16344c367dbcSMatthew G. Knepley for (e = 0, qf = 0; e < supportSize; ++e) { 16354c367dbcSMatthew G. Knepley PetscInt val, edge; 16364c367dbcSMatthew G. Knepley 16379566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, support[e], &val)); 16384c367dbcSMatthew G. Knepley if (val == 1) { 16399566063dSJacob Faibussowitsch PetscCall(PetscFindInt(support[e], numSplitPoints[dep + 1], splitPoints[dep + 1], &edge)); 164063a3b9bcSJacob Faibussowitsch PetscCheck(edge >= 0, comm, PETSC_ERR_ARG_WRONG, "Edge %" PetscInt_FMT " is not a split edge", support[e]); 16414c367dbcSMatthew G. Knepley supportNew[qf++] = edge + pMaxNew[dep + 2] + numSplitPoints[dep + 2]; 16424c367dbcSMatthew G. Knepley } 16434c367dbcSMatthew G. Knepley } 16449566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupport(sdm, hybedge, supportNew)); 1645cd0c2139SMatthew G Knepley } else if (dep == dim - 2) { 16464c367dbcSMatthew G. Knepley const PetscInt hybface = p + pMaxNew[dep + 1] + numSplitPoints[dep + 1]; 16474c367dbcSMatthew G. Knepley 1648cd0c2139SMatthew G Knepley /* Split old edge: old vertices in cone so no change */ 1649cd0c2139SMatthew G Knepley /* Split new edge: new vertices in cone */ 1650cd0c2139SMatthew G Knepley for (q = 0; q < coneSize; ++q) { 16519566063dSJacob Faibussowitsch PetscCall(PetscFindInt(cone[q], numSplitPoints[dep - 1], splitPoints[dep - 1], &v)); 1652e1757548SMatthew G. Knepley if (v < 0) { 16539566063dSJacob Faibussowitsch PetscCall(PetscFindInt(cone[q], numUnsplitPoints[dep - 1], unsplitPoints[dep - 1], &v)); 165463a3b9bcSJacob Faibussowitsch PetscCheck(v >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Could not locate point %" PetscInt_FMT " in split or unsplit points of depth %" PetscInt_FMT, cone[q], dep - 1); 16552582d50cSToby Isaac coneNew[q] = DMPlexShiftPoint_Internal(cone[q], depth, depthShift) /*cone[q] + depthOffset[dep-1]*/; 1656e1757548SMatthew G. Knepley } else { 16574c367dbcSMatthew G. Knepley coneNew[q] = v + pMaxNew[dep - 1]; 1658cd0c2139SMatthew G Knepley } 1659e1757548SMatthew G. Knepley } 16609566063dSJacob Faibussowitsch PetscCall(DMPlexSetCone(sdm, splitp, coneNew)); 1661cd0c2139SMatthew G Knepley /* Split old edge: Faces in positive side cells and old split faces */ 1662cd0c2139SMatthew G Knepley for (e = 0, q = 0; e < supportSize; ++e) { 1663cd0c2139SMatthew G Knepley PetscInt val; 1664cd0c2139SMatthew G Knepley 16659566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, support[e], &val)); 16664c367dbcSMatthew G. Knepley if (val == dim - 1) { 16672582d50cSToby Isaac supportNew[q++] = DMPlexShiftPoint_Internal(support[e], depth, depthShift) /*support[e] + depthOffset[dep+1]*/; 16684c367dbcSMatthew G. Knepley } else if (val == (shift + dim - 1)) { 16692582d50cSToby Isaac supportNew[q++] = DMPlexShiftPoint_Internal(support[e], depth, depthShift) /*support[e] + depthOffset[dep+1]*/; 1670cd0c2139SMatthew G Knepley } 1671cd0c2139SMatthew G Knepley } 1672b279cd2aSMatthew G. Knepley supportNew[q++] = p + pMaxNew[dep + 1] + numSplitPoints[dep + 1]; 16739566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupport(sdm, newp, supportNew)); 1674cd0c2139SMatthew G Knepley /* Split new edge: Faces in negative side cells and new split faces */ 1675cd0c2139SMatthew G Knepley for (e = 0, q = 0; e < supportSize; ++e) { 1676cd0c2139SMatthew G Knepley PetscInt val, face; 1677cd0c2139SMatthew G Knepley 16789566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, support[e], &val)); 1679cd0c2139SMatthew G Knepley if (val == dim - 1) { 16809566063dSJacob Faibussowitsch PetscCall(PetscFindInt(support[e], numSplitPoints[dep + 1], splitPoints[dep + 1], &face)); 168163a3b9bcSJacob Faibussowitsch PetscCheck(face >= 0, comm, PETSC_ERR_ARG_WRONG, "Face %" PetscInt_FMT " is not a split face", support[e]); 16824c367dbcSMatthew G. Knepley supportNew[q++] = face + pMaxNew[dep + 1]; 1683cd0c2139SMatthew G Knepley } else if (val == -(shift + dim - 1)) { 16842582d50cSToby Isaac supportNew[q++] = DMPlexShiftPoint_Internal(support[e], depth, depthShift) /*support[e] + depthOffset[dep+1]*/; 1685cd0c2139SMatthew G Knepley } 1686cd0c2139SMatthew G Knepley } 1687b279cd2aSMatthew G. Knepley supportNew[q++] = p + pMaxNew[dep + 1] + numSplitPoints[dep + 1]; 16889566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupport(sdm, splitp, supportNew)); 16894c367dbcSMatthew G. Knepley /* Hybrid face */ 16904c367dbcSMatthew G. Knepley coneNew[0] = newp; 16914c367dbcSMatthew G. Knepley coneNew[1] = splitp; 16924c367dbcSMatthew G. Knepley for (v = 0; v < coneSize; ++v) { 16934c367dbcSMatthew G. Knepley PetscInt vertex; 16949566063dSJacob Faibussowitsch PetscCall(PetscFindInt(cone[v], numSplitPoints[dep - 1], splitPoints[dep - 1], &vertex)); 1695e1757548SMatthew G. Knepley if (vertex < 0) { 16969566063dSJacob Faibussowitsch PetscCall(PetscFindInt(cone[v], numUnsplitPoints[dep - 1], unsplitPoints[dep - 1], &vertex)); 169763a3b9bcSJacob Faibussowitsch PetscCheck(vertex >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Could not locate point %" PetscInt_FMT " in split or unsplit points of depth %" PetscInt_FMT, cone[v], dep - 1); 1698e1757548SMatthew G. Knepley coneNew[2 + v] = vertex + pMaxNew[dep] + numSplitPoints[dep] + numSplitPoints[dep - 1]; 1699e1757548SMatthew G. Knepley } else { 17004c367dbcSMatthew G. Knepley coneNew[2 + v] = vertex + pMaxNew[dep] + numSplitPoints[dep]; 17014c367dbcSMatthew G. Knepley } 1702e1757548SMatthew G. Knepley } 17039566063dSJacob Faibussowitsch PetscCall(DMPlexSetCone(sdm, hybface, coneNew)); 17044c367dbcSMatthew G. Knepley for (e = 0, qf = 0; e < supportSize; ++e) { 17054c367dbcSMatthew G. Knepley PetscInt val, face; 17064c367dbcSMatthew G. Knepley 17079566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, support[e], &val)); 17084c367dbcSMatthew G. Knepley if (val == dim - 1) { 17099566063dSJacob Faibussowitsch PetscCall(PetscFindInt(support[e], numSplitPoints[dep + 1], splitPoints[dep + 1], &face)); 171063a3b9bcSJacob Faibussowitsch PetscCheck(face >= 0, comm, PETSC_ERR_ARG_WRONG, "Face %" PetscInt_FMT " is not a split face", support[e]); 17114c367dbcSMatthew G. Knepley supportNew[qf++] = face + pMaxNew[dep + 2] + numSplitPoints[dep + 2]; 17124c367dbcSMatthew G. Knepley } 17134c367dbcSMatthew G. Knepley } 17149566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupport(sdm, hybface, supportNew)); 1715cd0c2139SMatthew G Knepley } 1716cd0c2139SMatthew G Knepley } 1717cd0c2139SMatthew G Knepley } 171818c5995bSMatthew G. Knepley for (dep = 0; dep <= depth; ++dep) { 171918c5995bSMatthew G. Knepley for (p = 0; p < numUnsplitPoints[dep]; ++p) { 172018c5995bSMatthew G. Knepley const PetscInt oldp = unsplitPoints[dep][p]; 17212582d50cSToby Isaac const PetscInt newp = DMPlexShiftPoint_Internal(oldp, depth, depthShift) /*oldp + depthOffset[dep]*/; 1722b5a892a1SMatthew G. Knepley const PetscInt *cone, *support; 1723e1757548SMatthew G. Knepley PetscInt coneSize, supportSize, supportSizeNew, q, qf, e, f, s; 172418c5995bSMatthew G. Knepley 17259566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, oldp, &coneSize)); 17269566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, oldp, &cone)); 17279566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dm, oldp, &supportSize)); 17289566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(dm, oldp, &support)); 172918c5995bSMatthew G. Knepley if (dep == 0) { 173018c5995bSMatthew G. Knepley const PetscInt hybedge = p + pMaxNew[dep + 1] + numSplitPoints[dep + 1] + numSplitPoints[dep]; 173118c5995bSMatthew G. Knepley 173218c5995bSMatthew G. Knepley /* Unsplit vertex */ 17339566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(sdm, newp, &supportSizeNew)); 173418c5995bSMatthew G. Knepley for (s = 0, q = 0; s < supportSize; ++s) { 17352582d50cSToby Isaac supportNew[q++] = DMPlexShiftPoint_Internal(support[s], depth, depthShift) /*support[s] + depthOffset[dep+1]*/; 17369566063dSJacob Faibussowitsch PetscCall(PetscFindInt(support[s], numSplitPoints[dep + 1], splitPoints[dep + 1], &e)); 1737ad540459SPierre Jolivet if (e >= 0) supportNew[q++] = e + pMaxNew[dep + 1]; 173818c5995bSMatthew G. Knepley } 173918c5995bSMatthew G. Knepley supportNew[q++] = hybedge; 174018c5995bSMatthew G. Knepley supportNew[q++] = hybedge; 174163a3b9bcSJacob Faibussowitsch PetscCheck(q == supportSizeNew, comm, PETSC_ERR_ARG_WRONG, "Support size %" PetscInt_FMT " != %" PetscInt_FMT " for vertex %" PetscInt_FMT, q, supportSizeNew, newp); 17429566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupport(sdm, newp, supportNew)); 174318c5995bSMatthew G. Knepley /* Hybrid edge */ 174418c5995bSMatthew G. Knepley coneNew[0] = newp; 174518c5995bSMatthew G. Knepley coneNew[1] = newp; 17469566063dSJacob Faibussowitsch PetscCall(DMPlexSetCone(sdm, hybedge, coneNew)); 174718c5995bSMatthew G. Knepley for (e = 0, qf = 0; e < supportSize; ++e) { 174818c5995bSMatthew G. Knepley PetscInt val, edge; 174918c5995bSMatthew G. Knepley 17509566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, support[e], &val)); 175118c5995bSMatthew G. Knepley if (val == 1) { 17529566063dSJacob Faibussowitsch PetscCall(PetscFindInt(support[e], numSplitPoints[dep + 1], splitPoints[dep + 1], &edge)); 175363a3b9bcSJacob Faibussowitsch PetscCheck(edge >= 0, comm, PETSC_ERR_ARG_WRONG, "Edge %" PetscInt_FMT " is not a split edge", support[e]); 175418c5995bSMatthew G. Knepley supportNew[qf++] = edge + pMaxNew[dep + 2] + numSplitPoints[dep + 2]; 1755e1757548SMatthew G. Knepley } else if (val == (shift2 + 1)) { 17569566063dSJacob Faibussowitsch PetscCall(PetscFindInt(support[e], numUnsplitPoints[dep + 1], unsplitPoints[dep + 1], &edge)); 175763a3b9bcSJacob Faibussowitsch PetscCheck(edge >= 0, comm, PETSC_ERR_ARG_WRONG, "Edge %" PetscInt_FMT " is not a unsplit edge", support[e]); 1758e1757548SMatthew G. Knepley supportNew[qf++] = edge + pMaxNew[dep + 2] + numSplitPoints[dep + 2] + numSplitPoints[dep + 1]; 175918c5995bSMatthew G. Knepley } 176018c5995bSMatthew G. Knepley } 17619566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupport(sdm, hybedge, supportNew)); 1762e1757548SMatthew G. Knepley } else if (dep == dim - 2) { 1763e1757548SMatthew G. Knepley const PetscInt hybface = p + pMaxNew[dep + 1] + numSplitPoints[dep + 1] + numSplitPoints[dep]; 1764e1757548SMatthew G. Knepley 1765da1dd7e4SMatthew G. Knepley /* Unsplit edge: Faces into original edge, split face, and hybrid face twice */ 1766e1757548SMatthew G. Knepley for (f = 0, qf = 0; f < supportSize; ++f) { 1767e1757548SMatthew G. Knepley PetscInt val, face; 1768e1757548SMatthew G. Knepley 17699566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, support[f], &val)); 1770e1757548SMatthew G. Knepley if (val == dim - 1) { 17719566063dSJacob Faibussowitsch PetscCall(PetscFindInt(support[f], numSplitPoints[dep + 1], splitPoints[dep + 1], &face)); 177263a3b9bcSJacob Faibussowitsch PetscCheck(face >= 0, comm, PETSC_ERR_ARG_WRONG, "Face %" PetscInt_FMT " is not a split face", support[f]); 17732582d50cSToby Isaac supportNew[qf++] = DMPlexShiftPoint_Internal(support[f], depth, depthShift) /*support[f] + depthOffset[dep+1]*/; 1774e1757548SMatthew G. Knepley supportNew[qf++] = face + pMaxNew[dep + 1]; 1775e1757548SMatthew G. Knepley } else { 17762582d50cSToby Isaac supportNew[qf++] = DMPlexShiftPoint_Internal(support[f], depth, depthShift) /*support[f] + depthOffset[dep+1]*/; 1777e1757548SMatthew G. Knepley } 1778e1757548SMatthew G. Knepley } 1779e1757548SMatthew G. Knepley supportNew[qf++] = hybface; 1780e1757548SMatthew G. Knepley supportNew[qf++] = hybface; 17819566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(sdm, newp, &supportSizeNew)); 178263a3b9bcSJacob Faibussowitsch PetscCheck(qf == supportSizeNew, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Support size for unsplit edge %" PetscInt_FMT " is %" PetscInt_FMT " != %" PetscInt_FMT, newp, qf, supportSizeNew); 17839566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupport(sdm, newp, supportNew)); 1784e1757548SMatthew G. Knepley /* Add hybrid face */ 1785e1757548SMatthew G. Knepley coneNew[0] = newp; 1786212cc919SMatthew G. Knepley coneNew[1] = newp; 17879566063dSJacob Faibussowitsch PetscCall(PetscFindInt(cone[0], numUnsplitPoints[dep - 1], unsplitPoints[dep - 1], &v)); 178863a3b9bcSJacob Faibussowitsch PetscCheck(v >= 0, comm, PETSC_ERR_ARG_WRONG, "Vertex %" PetscInt_FMT " is not an unsplit vertex", cone[0]); 1789212cc919SMatthew G. Knepley coneNew[2] = v + pMaxNew[dep] + numSplitPoints[dep] + numSplitPoints[dep - 1]; 17909566063dSJacob Faibussowitsch PetscCall(PetscFindInt(cone[1], numUnsplitPoints[dep - 1], unsplitPoints[dep - 1], &v)); 179163a3b9bcSJacob Faibussowitsch PetscCheck(v >= 0, comm, PETSC_ERR_ARG_WRONG, "Vertex %" PetscInt_FMT " is not an unsplit vertex", cone[1]); 1792e1757548SMatthew G. Knepley coneNew[3] = v + pMaxNew[dep] + numSplitPoints[dep] + numSplitPoints[dep - 1]; 17939566063dSJacob Faibussowitsch PetscCall(DMPlexSetCone(sdm, hybface, coneNew)); 1794da1dd7e4SMatthew G. Knepley for (f = 0, qf = 0; f < supportSize; ++f) { 1795da1dd7e4SMatthew G. Knepley PetscInt val, face; 1796da1dd7e4SMatthew G. Knepley 17979566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, support[f], &val)); 1798da1dd7e4SMatthew G. Knepley if (val == dim - 1) { 17999566063dSJacob Faibussowitsch PetscCall(PetscFindInt(support[f], numSplitPoints[dep + 1], splitPoints[dep + 1], &face)); 1800da1dd7e4SMatthew G. Knepley supportNew[qf++] = face + pMaxNew[dep + 2] + numSplitPoints[dep + 2]; 1801da1dd7e4SMatthew G. Knepley } 1802da1dd7e4SMatthew G. Knepley } 18039566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(sdm, hybface, &supportSizeNew)); 180463a3b9bcSJacob Faibussowitsch PetscCheck(qf == supportSizeNew, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Support size for hybrid face %" PetscInt_FMT " is %" PetscInt_FMT " != %" PetscInt_FMT, hybface, qf, supportSizeNew); 18059566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupport(sdm, hybface, supportNew)); 1806cd0c2139SMatthew G Knepley } 1807cd0c2139SMatthew G Knepley } 1808cd0c2139SMatthew G Knepley } 1809cd0c2139SMatthew G Knepley /* Step 6b: Replace split points in negative side cones */ 1810cd0c2139SMatthew G Knepley for (sp = 0; sp < numSP; ++sp) { 1811cd0c2139SMatthew G Knepley PetscInt dep = values[sp]; 1812cd0c2139SMatthew G Knepley IS pIS; 1813cd0c2139SMatthew G Knepley PetscInt numPoints; 1814cd0c2139SMatthew G Knepley const PetscInt *points; 1815cd0c2139SMatthew G Knepley 1816cd0c2139SMatthew G Knepley if (dep >= 0) continue; 18179566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(label, dep, &pIS)); 1818cd0c2139SMatthew G Knepley if (!pIS) continue; 1819cd0c2139SMatthew G Knepley dep = -dep - shift; 18209566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(pIS, &numPoints)); 18219566063dSJacob Faibussowitsch PetscCall(ISGetIndices(pIS, &points)); 1822cd0c2139SMatthew G Knepley for (p = 0; p < numPoints; ++p) { 1823cd0c2139SMatthew G Knepley const PetscInt oldp = points[p]; 18242582d50cSToby Isaac const PetscInt newp = DMPlexShiftPoint_Internal(oldp, depth, depthShift) /*depthOffset[dep] + oldp*/; 1825cd0c2139SMatthew G Knepley const PetscInt *cone; 1826cd0c2139SMatthew G Knepley PetscInt coneSize, c; 182750cf782dSMatthew G. Knepley /* PetscBool replaced = PETSC_FALSE; */ 1828cd0c2139SMatthew G Knepley 1829cd0c2139SMatthew G Knepley /* Negative edge: replace split vertex */ 1830cd0c2139SMatthew G Knepley /* Negative cell: replace split face */ 18319566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(sdm, newp, &coneSize)); 18329566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(sdm, newp, &cone)); 1833cd0c2139SMatthew G Knepley for (c = 0; c < coneSize; ++c) { 1834e38fbfedSToby Isaac const PetscInt coldp = DMPlexShiftPointInverse_Internal(cone[c], depth, depthShift); 1835cd0c2139SMatthew G Knepley PetscInt csplitp, cp, val; 1836cd0c2139SMatthew G Knepley 18379566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, coldp, &val)); 1838cd0c2139SMatthew G Knepley if (val == dep - 1) { 18399566063dSJacob Faibussowitsch PetscCall(PetscFindInt(coldp, numSplitPoints[dep - 1], splitPoints[dep - 1], &cp)); 184063a3b9bcSJacob Faibussowitsch PetscCheck(cp >= 0, comm, PETSC_ERR_ARG_WRONG, "Point %" PetscInt_FMT " is not a split point of dimension %" PetscInt_FMT, oldp, dep - 1); 1841cd0c2139SMatthew G Knepley csplitp = pMaxNew[dep - 1] + cp; 18429566063dSJacob Faibussowitsch PetscCall(DMPlexInsertCone(sdm, newp, c, csplitp)); 184350cf782dSMatthew G. Knepley /* replaced = PETSC_TRUE; */ 1844cd0c2139SMatthew G Knepley } 1845cd0c2139SMatthew G Knepley } 18464a189a86SMatthew G. Knepley /* Cells with only a vertex or edge on the submesh have no replacement */ 184728b400f6SJacob Faibussowitsch /* PetscCheck(replaced,comm, PETSC_ERR_ARG_WRONG, "The cone of point %d does not contain split points", oldp); */ 1848cd0c2139SMatthew G Knepley } 18499566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(pIS, &points)); 18509566063dSJacob Faibussowitsch PetscCall(ISDestroy(&pIS)); 1851cd0c2139SMatthew G Knepley } 18520e18dc48SMatthew G. Knepley PetscCall(DMPlexReorderCohesiveSupports(sdm)); 1853fa8e8ae5SToby Isaac /* Step 7: Coordinates */ 18549566063dSJacob Faibussowitsch PetscCall(DMPlexShiftCoordinates_Internal(dm, depthShift, sdm)); 18559566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateSection(sdm, &coordSection)); 18569566063dSJacob Faibussowitsch PetscCall(DMGetCoordinatesLocal(sdm, &coordinates)); 18579566063dSJacob Faibussowitsch PetscCall(VecGetArray(coordinates, &coords)); 1858cd0c2139SMatthew G Knepley for (v = 0; v < (numSplitPoints ? numSplitPoints[0] : 0); ++v) { 18592582d50cSToby Isaac const PetscInt newp = DMPlexShiftPoint_Internal(splitPoints[0][v], depth, depthShift) /*depthOffset[0] + splitPoints[0][v]*/; 1860cd0c2139SMatthew G Knepley const PetscInt splitp = pMaxNew[0] + v; 1861cd0c2139SMatthew G Knepley PetscInt dof, off, soff, d; 1862cd0c2139SMatthew G Knepley 18639566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(coordSection, newp, &dof)); 18649566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(coordSection, newp, &off)); 18659566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(coordSection, splitp, &soff)); 1866cd0c2139SMatthew G Knepley for (d = 0; d < dof; ++d) coords[soff + d] = coords[off + d]; 1867cd0c2139SMatthew G Knepley } 18689566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(coordinates, &coords)); 1869fa8e8ae5SToby Isaac /* Step 8: SF, if I can figure this out we can split the mesh in parallel */ 18709566063dSJacob Faibussowitsch PetscCall(DMPlexShiftSF_Internal(dm, depthShift, sdm)); 1871b6dfa339SMatthew G. Knepley /* TODO We need to associate the ghost points with the correct replica */ 1872fa8e8ae5SToby Isaac /* Step 9: Labels */ 18739566063dSJacob Faibussowitsch PetscCall(DMPlexShiftLabels_Internal(dm, depthShift, sdm)); 18749566063dSJacob Faibussowitsch PetscCall(DMPlexCreateVTKLabel_Internal(dm, PETSC_FALSE, sdm)); 18759566063dSJacob Faibussowitsch PetscCall(DMGetNumLabels(sdm, &numLabels)); 1876cd0c2139SMatthew G Knepley for (dep = 0; dep <= depth; ++dep) { 1877cd0c2139SMatthew G Knepley for (p = 0; p < numSplitPoints[dep]; ++p) { 18782582d50cSToby Isaac const PetscInt newp = DMPlexShiftPoint_Internal(splitPoints[dep][p], depth, depthShift) /*depthOffset[dep] + splitPoints[dep][p]*/; 1879cd0c2139SMatthew G Knepley const PetscInt splitp = pMaxNew[dep] + p; 1880cd0c2139SMatthew G Knepley PetscInt l; 1881cd0c2139SMatthew G Knepley 18827db7e0a7SMatthew G. Knepley if (splitLabel) { 18837db7e0a7SMatthew G. Knepley const PetscInt val = 100 + dep; 18847db7e0a7SMatthew G. Knepley 18859566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(splitLabel, newp, val)); 18869566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(splitLabel, splitp, -val)); 18877db7e0a7SMatthew G. Knepley } 1888cd0c2139SMatthew G Knepley for (l = 0; l < numLabels; ++l) { 1889cd0c2139SMatthew G Knepley DMLabel mlabel; 1890cd0c2139SMatthew G Knepley const char *lname; 1891cd0c2139SMatthew G Knepley PetscInt val; 18929a356370SMatthew G. Knepley PetscBool isDepth; 1893cd0c2139SMatthew G Knepley 18949566063dSJacob Faibussowitsch PetscCall(DMGetLabelName(sdm, l, &lname)); 18959566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(lname, "depth", &isDepth)); 18969a356370SMatthew G. Knepley if (isDepth) continue; 18979566063dSJacob Faibussowitsch PetscCall(DMGetLabel(sdm, lname, &mlabel)); 18989566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(mlabel, newp, &val)); 189948a46eb9SPierre Jolivet if (val >= 0) PetscCall(DMLabelSetValue(mlabel, splitp, val)); 1900cd0c2139SMatthew G Knepley } 1901cd0c2139SMatthew G Knepley } 1902cd0c2139SMatthew G Knepley } 1903cd0c2139SMatthew G Knepley for (sp = 0; sp < numSP; ++sp) { 1904cd0c2139SMatthew G Knepley const PetscInt dep = values[sp]; 1905cd0c2139SMatthew G Knepley 1906cd0c2139SMatthew G Knepley if ((dep < 0) || (dep > depth)) continue; 19079566063dSJacob Faibussowitsch if (splitIS[dep]) PetscCall(ISRestoreIndices(splitIS[dep], &splitPoints[dep])); 19089566063dSJacob Faibussowitsch PetscCall(ISDestroy(&splitIS[dep])); 19099566063dSJacob Faibussowitsch if (unsplitIS[dep]) PetscCall(ISRestoreIndices(unsplitIS[dep], &unsplitPoints[dep])); 19109566063dSJacob Faibussowitsch PetscCall(ISDestroy(&unsplitIS[dep])); 1911cd0c2139SMatthew G Knepley } 1912b6dfa339SMatthew G. Knepley if (ghostIS) PetscCall(ISRestoreIndices(ghostIS, &ghostPoints)); 1913b6dfa339SMatthew G. Knepley PetscCall(ISDestroy(&ghostIS)); 1914cd0c2139SMatthew G Knepley if (label) { 19159566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(valueIS, &values)); 19169566063dSJacob Faibussowitsch PetscCall(ISDestroy(&valueIS)); 1917cd0c2139SMatthew G Knepley } 19180d4d4d06SMatthew G. Knepley for (d = 0; d <= depth; ++d) { 19199566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthStratum(sdm, d, NULL, &pEnd)); 192036dbac82SMatthew G. Knepley pMaxNew[d] = pEnd - numHybridPoints[d] - numHybridPointsOld[d]; 19210d4d4d06SMatthew G. Knepley } 19229566063dSJacob Faibussowitsch PetscCall(PetscFree3(coneNew, coneONew, supportNew)); 19239566063dSJacob Faibussowitsch PetscCall(PetscFree5(depthMax, depthEnd, depthShift, pMaxNew, numHybridPointsOld)); 19249566063dSJacob Faibussowitsch PetscCall(PetscFree7(splitIS, unsplitIS, numSplitPoints, numUnsplitPoints, numHybridPoints, splitPoints, unsplitPoints)); 19253ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1926cd0c2139SMatthew G Knepley } 1927cd0c2139SMatthew G Knepley 1928cd0c2139SMatthew G Knepley /*@C 1929cd0c2139SMatthew G Knepley DMPlexConstructCohesiveCells - Construct cohesive cells which split the face along an internal interface 1930cd0c2139SMatthew G Knepley 193120f4b53cSBarry Smith Collective 1932cd0c2139SMatthew G Knepley 1933cd0c2139SMatthew G Knepley Input Parameters: 193420f4b53cSBarry Smith + dm - The original `DM` 193520f4b53cSBarry Smith - label - The `DMLabel` specifying the boundary faces (this could be auto-generated) 1936cd0c2139SMatthew G Knepley 1937cd0c2139SMatthew G Knepley Output Parameters: 193820f4b53cSBarry Smith + splitLabel - The `DMLabel` containing the split points, or `NULL` if no output is desired 193920f4b53cSBarry Smith - dmSplit - The new `DM` 1940cd0c2139SMatthew G Knepley 1941cd0c2139SMatthew G Knepley Level: developer 1942cd0c2139SMatthew G Knepley 19431cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMCreate()`, `DMPlexLabelCohesiveComplete()` 1944cd0c2139SMatthew G Knepley @*/ 1945d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexConstructCohesiveCells(DM dm, DMLabel label, DMLabel splitLabel, DM *dmSplit) 1946d71ae5a4SJacob Faibussowitsch { 1947cd0c2139SMatthew G Knepley DM sdm; 1948cd0c2139SMatthew G Knepley PetscInt dim; 1949cd0c2139SMatthew G Knepley 1950cd0c2139SMatthew G Knepley PetscFunctionBegin; 1951cd0c2139SMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 19524f572ea9SToby Isaac PetscAssertPointer(dmSplit, 4); 19539566063dSJacob Faibussowitsch PetscCall(DMCreate(PetscObjectComm((PetscObject)dm), &sdm)); 19549566063dSJacob Faibussowitsch PetscCall(DMSetType(sdm, DMPLEX)); 19559566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 19569566063dSJacob Faibussowitsch PetscCall(DMSetDimension(sdm, dim)); 1957cd0c2139SMatthew G Knepley switch (dim) { 1958cd0c2139SMatthew G Knepley case 2: 1959d71ae5a4SJacob Faibussowitsch case 3: 1960d71ae5a4SJacob Faibussowitsch PetscCall(DMPlexConstructCohesiveCells_Internal(dm, label, splitLabel, sdm)); 1961d71ae5a4SJacob Faibussowitsch break; 1962d71ae5a4SJacob Faibussowitsch default: 1963d71ae5a4SJacob Faibussowitsch SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Cannot construct cohesive cells for dimension %" PetscInt_FMT, dim); 1964cd0c2139SMatthew G Knepley } 1965cd0c2139SMatthew G Knepley *dmSplit = sdm; 19663ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1967cd0c2139SMatthew G Knepley } 1968cd0c2139SMatthew G Knepley 19690f66a230SMatthew G. Knepley /* Returns the side of the surface for a given cell with a face on the surface */ 1970d71ae5a4SJacob Faibussowitsch static PetscErrorCode GetSurfaceSide_Static(DM dm, DM subdm, PetscInt numSubpoints, const PetscInt *subpoints, PetscInt cell, PetscInt face, PetscBool *pos) 1971d71ae5a4SJacob Faibussowitsch { 19720f66a230SMatthew G. Knepley const PetscInt *cone, *ornt; 19730f66a230SMatthew G. Knepley PetscInt dim, coneSize, c; 19740f66a230SMatthew G. Knepley 19750f66a230SMatthew G. Knepley PetscFunctionBegin; 19760f66a230SMatthew G. Knepley *pos = PETSC_TRUE; 19779566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 19789566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, cell, &coneSize)); 19799566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, cell, &cone)); 19809566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeOrientation(dm, cell, &ornt)); 19810f66a230SMatthew G. Knepley for (c = 0; c < coneSize; ++c) { 19820f66a230SMatthew G. Knepley if (cone[c] == face) { 19830f66a230SMatthew G. Knepley PetscInt o = ornt[c]; 19840f66a230SMatthew G. Knepley 19850f66a230SMatthew G. Knepley if (subdm) { 19860f66a230SMatthew G. Knepley const PetscInt *subcone, *subornt; 19870f66a230SMatthew G. Knepley PetscInt subpoint, subface, subconeSize, sc; 19880f66a230SMatthew G. Knepley 19899566063dSJacob Faibussowitsch PetscCall(PetscFindInt(cell, numSubpoints, subpoints, &subpoint)); 19909566063dSJacob Faibussowitsch PetscCall(PetscFindInt(face, numSubpoints, subpoints, &subface)); 19919566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(subdm, subpoint, &subconeSize)); 19929566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(subdm, subpoint, &subcone)); 19939566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeOrientation(subdm, subpoint, &subornt)); 19940f66a230SMatthew G. Knepley for (sc = 0; sc < subconeSize; ++sc) { 19950f66a230SMatthew G. Knepley if (subcone[sc] == subface) { 19960f66a230SMatthew G. Knepley o = subornt[0]; 19970f66a230SMatthew G. Knepley break; 19980f66a230SMatthew G. Knepley } 19990f66a230SMatthew G. Knepley } 200063a3b9bcSJacob Faibussowitsch PetscCheck(sc < subconeSize, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Could not find subpoint %" PetscInt_FMT " (%" PetscInt_FMT ") in cone for subpoint %" PetscInt_FMT " (%" PetscInt_FMT ")", subface, face, subpoint, cell); 20010f66a230SMatthew G. Knepley } 20020f66a230SMatthew G. Knepley if (o >= 0) *pos = PETSC_TRUE; 20030f66a230SMatthew G. Knepley else *pos = PETSC_FALSE; 20040f66a230SMatthew G. Knepley break; 20050f66a230SMatthew G. Knepley } 20060f66a230SMatthew G. Knepley } 200763a3b9bcSJacob Faibussowitsch PetscCheck(c != coneSize, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Cell %" PetscInt_FMT " in split face %" PetscInt_FMT " support does not have it in the cone", cell, face); 20083ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 20090f66a230SMatthew G. Knepley } 20100f66a230SMatthew G. Knepley 2011d71ae5a4SJacob Faibussowitsch static PetscErrorCode CheckFaultEdge_Private(DM dm, DMLabel label) 2012d71ae5a4SJacob Faibussowitsch { 2013accc9626SMatthew G. Knepley IS facePosIS, faceNegIS, dimIS; 2014accc9626SMatthew G. Knepley const PetscInt *points; 2015accc9626SMatthew G. Knepley PetscInt dim, numPoints, p, shift = 100, shift2 = 200; 2016accc9626SMatthew G. Knepley 2017accc9626SMatthew G. Knepley PetscFunctionBegin; 2018accc9626SMatthew G. Knepley PetscCall(DMGetDimension(dm, &dim)); 2019accc9626SMatthew G. Knepley /* If any faces touching the fault divide cells on either side, split them */ 2020accc9626SMatthew G. Knepley PetscCall(DMLabelGetStratumIS(label, shift + dim - 1, &facePosIS)); 2021accc9626SMatthew G. Knepley PetscCall(DMLabelGetStratumIS(label, -(shift + dim - 1), &faceNegIS)); 2022accc9626SMatthew G. Knepley if (!facePosIS || !faceNegIS) { 2023accc9626SMatthew G. Knepley PetscCall(ISDestroy(&facePosIS)); 2024accc9626SMatthew G. Knepley PetscCall(ISDestroy(&faceNegIS)); 20253ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2026accc9626SMatthew G. Knepley } 2027accc9626SMatthew G. Knepley PetscCall(ISExpand(facePosIS, faceNegIS, &dimIS)); 2028accc9626SMatthew G. Knepley PetscCall(ISDestroy(&facePosIS)); 2029accc9626SMatthew G. Knepley PetscCall(ISDestroy(&faceNegIS)); 2030accc9626SMatthew G. Knepley PetscCall(ISGetLocalSize(dimIS, &numPoints)); 2031accc9626SMatthew G. Knepley PetscCall(ISGetIndices(dimIS, &points)); 2032accc9626SMatthew G. Knepley for (p = 0; p < numPoints; ++p) { 2033accc9626SMatthew G. Knepley const PetscInt point = points[p]; 2034accc9626SMatthew G. Knepley const PetscInt *support; 2035accc9626SMatthew G. Knepley PetscInt supportSize, valA, valB; 2036accc9626SMatthew G. Knepley 2037accc9626SMatthew G. Knepley PetscCall(DMPlexGetSupportSize(dm, point, &supportSize)); 2038accc9626SMatthew G. Knepley if (supportSize != 2) continue; 2039accc9626SMatthew G. Knepley PetscCall(DMPlexGetSupport(dm, point, &support)); 2040accc9626SMatthew G. Knepley PetscCall(DMLabelGetValue(label, support[0], &valA)); 2041accc9626SMatthew G. Knepley PetscCall(DMLabelGetValue(label, support[1], &valB)); 2042accc9626SMatthew G. Knepley if ((valA == -1) || (valB == -1)) continue; 2043accc9626SMatthew G. Knepley if (valA * valB > 0) continue; 2044e1a13daeSMatthew G. Knepley /* Check that this face is not incident on only unsplit faces, meaning has at least one split face */ 2045e1a13daeSMatthew G. Knepley { 2046e1a13daeSMatthew G. Knepley PetscInt *closure = NULL; 2047e1a13daeSMatthew G. Knepley PetscBool split = PETSC_FALSE; 2048e1a13daeSMatthew G. Knepley PetscInt closureSize, cl; 2049e1a13daeSMatthew G. Knepley 2050e1a13daeSMatthew G. Knepley PetscCall(DMPlexGetTransitiveClosure(dm, point, PETSC_TRUE, &closureSize, &closure)); 2051e1a13daeSMatthew G. Knepley for (cl = 0; cl < closureSize * 2; cl += 2) { 2052e1a13daeSMatthew G. Knepley PetscCall(DMLabelGetValue(label, closure[cl], &valA)); 20539371c9d4SSatish Balay if ((valA >= 0) && (valA <= dim)) { 20549371c9d4SSatish Balay split = PETSC_TRUE; 20559371c9d4SSatish Balay break; 20569371c9d4SSatish Balay } 2057e1a13daeSMatthew G. Knepley } 2058e1a13daeSMatthew G. Knepley PetscCall(DMPlexRestoreTransitiveClosure(dm, point, PETSC_TRUE, &closureSize, &closure)); 2059e1a13daeSMatthew G. Knepley if (!split) continue; 2060e1a13daeSMatthew G. Knepley } 2061accc9626SMatthew G. Knepley /* Split the face */ 2062accc9626SMatthew G. Knepley PetscCall(DMLabelGetValue(label, point, &valA)); 2063accc9626SMatthew G. Knepley PetscCall(DMLabelClearValue(label, point, valA)); 2064accc9626SMatthew G. Knepley PetscCall(DMLabelSetValue(label, point, dim - 1)); 2065accc9626SMatthew G. Knepley /* Label its closure: 2066accc9626SMatthew G. Knepley unmarked: label as unsplit 2067accc9626SMatthew G. Knepley incident: relabel as split 2068accc9626SMatthew G. Knepley split: do nothing 2069accc9626SMatthew G. Knepley */ 2070accc9626SMatthew G. Knepley { 2071accc9626SMatthew G. Knepley PetscInt *closure = NULL; 2072accc9626SMatthew G. Knepley PetscInt closureSize, cl, dep; 2073accc9626SMatthew G. Knepley 2074accc9626SMatthew G. Knepley PetscCall(DMPlexGetTransitiveClosure(dm, point, PETSC_TRUE, &closureSize, &closure)); 2075accc9626SMatthew G. Knepley for (cl = 0; cl < closureSize * 2; cl += 2) { 2076accc9626SMatthew G. Knepley PetscCall(DMLabelGetValue(label, closure[cl], &valA)); 2077accc9626SMatthew G. Knepley if (valA == -1) { /* Mark as unsplit */ 2078accc9626SMatthew G. Knepley PetscCall(DMPlexGetPointDepth(dm, closure[cl], &dep)); 2079accc9626SMatthew G. Knepley PetscCall(DMLabelSetValue(label, closure[cl], shift2 + dep)); 2080accc9626SMatthew G. Knepley } else if (((valA >= shift) && (valA < shift2)) || ((valA <= -shift) && (valA > -shift2))) { 2081accc9626SMatthew G. Knepley PetscCall(DMPlexGetPointDepth(dm, closure[cl], &dep)); 2082accc9626SMatthew G. Knepley PetscCall(DMLabelClearValue(label, closure[cl], valA)); 2083accc9626SMatthew G. Knepley PetscCall(DMLabelSetValue(label, closure[cl], dep)); 2084accc9626SMatthew G. Knepley } 2085accc9626SMatthew G. Knepley } 2086accc9626SMatthew G. Knepley PetscCall(DMPlexRestoreTransitiveClosure(dm, point, PETSC_TRUE, &closureSize, &closure)); 2087accc9626SMatthew G. Knepley } 2088accc9626SMatthew G. Knepley } 2089accc9626SMatthew G. Knepley PetscCall(ISRestoreIndices(dimIS, &points)); 2090accc9626SMatthew G. Knepley PetscCall(ISDestroy(&dimIS)); 20913ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2092accc9626SMatthew G. Knepley } 2093accc9626SMatthew G. Knepley 2094cd0c2139SMatthew G Knepley /*@ 20950f66a230SMatthew G. Knepley DMPlexLabelCohesiveComplete - Starting with a label marking points on an internal surface, we add all other mesh pieces 2096cd0c2139SMatthew G Knepley to complete the surface 2097cd0c2139SMatthew G Knepley 2098cd0c2139SMatthew G Knepley Input Parameters: 209920f4b53cSBarry Smith + dm - The `DM` 210020f4b53cSBarry Smith . label - A `DMLabel` marking the surface 210120f4b53cSBarry Smith . blabel - A `DMLabel` marking the vertices on the boundary which will not be duplicated, or `NULL` to find them automatically 210220f4b53cSBarry Smith . bvalue - Value of `DMLabel` marking the vertices on the boundary 2103bb55d314SMatthew G. Knepley . flip - Flag to flip the submesh normal and replace points on the other side 210420f4b53cSBarry Smith - subdm - The `DM` associated with the label, or `NULL` 2105cd0c2139SMatthew G Knepley 2106cd0c2139SMatthew G Knepley Output Parameter: 210720f4b53cSBarry Smith . label - A `DMLabel` marking all surface points 21080f66a230SMatthew G. Knepley 2109cd0c2139SMatthew G Knepley Level: developer 2110cd0c2139SMatthew G Knepley 211120f4b53cSBarry Smith Note: 211220f4b53cSBarry Smith The vertices in blabel are called "unsplit" in the terminology from hybrid cell creation. 211320f4b53cSBarry Smith 21141cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexConstructCohesiveCells()`, `DMPlexLabelComplete()` 2115cd0c2139SMatthew G Knepley @*/ 2116d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexLabelCohesiveComplete(DM dm, DMLabel label, DMLabel blabel, PetscInt bvalue, PetscBool flip, DM subdm) 2117d71ae5a4SJacob Faibussowitsch { 2118d90583fdSMatthew G. Knepley DMLabel depthLabel; 2119accc9626SMatthew G. Knepley IS dimIS, subpointIS = NULL; 212047946fd8SMatthew G. Knepley const PetscInt *points, *subpoints; 2121bb55d314SMatthew G. Knepley const PetscInt rev = flip ? -1 : 1; 2122accc9626SMatthew G. Knepley PetscInt shift = 100, shift2 = 200, shift3 = 300, dim, depth, numPoints, numSubpoints, p, val; 2123cd0c2139SMatthew G Knepley 2124cd0c2139SMatthew G Knepley PetscFunctionBegin; 21259566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepth(dm, &depth)); 21269566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 21279566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthLabel(dm, &depthLabel)); 212847946fd8SMatthew G. Knepley if (subdm) { 21299566063dSJacob Faibussowitsch PetscCall(DMPlexGetSubpointIS(subdm, &subpointIS)); 213047946fd8SMatthew G. Knepley if (subpointIS) { 21319566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(subpointIS, &numSubpoints)); 21329566063dSJacob Faibussowitsch PetscCall(ISGetIndices(subpointIS, &subpoints)); 213347946fd8SMatthew G. Knepley } 213447946fd8SMatthew G. Knepley } 2135d7c8f101SMatthew G. Knepley /* Mark cell on the fault, and its faces which touch the fault: cell orientation for face gives the side of the fault */ 21369566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(label, dim - 1, &dimIS)); 2137accc9626SMatthew G. Knepley if (!dimIS) goto divide; 21389566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(dimIS, &numPoints)); 21399566063dSJacob Faibussowitsch PetscCall(ISGetIndices(dimIS, &points)); 2140d7c8f101SMatthew G. Knepley for (p = 0; p < numPoints; ++p) { /* Loop over fault faces */ 2141cd0c2139SMatthew G Knepley const PetscInt *support; 2142cd0c2139SMatthew G Knepley PetscInt supportSize, s; 2143cd0c2139SMatthew G Knepley 21449566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dm, points[p], &supportSize)); 2145c4419245SMatthew G. Knepley #if 0 2146c4419245SMatthew G. Knepley if (supportSize != 2) { 2147c4419245SMatthew G. Knepley const PetscInt *lp; 2148c4419245SMatthew G. Knepley PetscInt Nlp, pind; 2149c4419245SMatthew G. Knepley 2150c4419245SMatthew G. Knepley /* Check that for a cell with a single support face, that face is in the SF */ 2151c4419245SMatthew G. Knepley /* THis check only works for the remote side. We would need root side information */ 21529566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(dm->sf, NULL, &Nlp, &lp, NULL)); 21539566063dSJacob Faibussowitsch PetscCall(PetscFindInt(points[p], Nlp, lp, &pind)); 215463a3b9bcSJacob Faibussowitsch PetscCheck(pind >= 0,PetscObjectComm((PetscObject) dm), PETSC_ERR_ARG_WRONG, "Split face %" PetscInt_FMT " has %" PetscInt_FMT " != 2 supports, and the face is not shared with another process", points[p], supportSize); 2155c4419245SMatthew G. Knepley } 2156c4419245SMatthew G. Knepley #endif 21579566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(dm, points[p], &support)); 2158cd0c2139SMatthew G Knepley for (s = 0; s < supportSize; ++s) { 21590f66a230SMatthew G. Knepley const PetscInt *cone; 2160cd0c2139SMatthew G Knepley PetscInt coneSize, c; 21610f66a230SMatthew G. Knepley PetscBool pos; 2162cd0c2139SMatthew G Knepley 21639566063dSJacob Faibussowitsch PetscCall(GetSurfaceSide_Static(dm, subdm, numSubpoints, subpoints, support[s], points[p], &pos)); 21649566063dSJacob Faibussowitsch if (pos) PetscCall(DMLabelSetValue(label, support[s], rev * (shift + dim))); 21659566063dSJacob Faibussowitsch else PetscCall(DMLabelSetValue(label, support[s], -rev * (shift + dim))); 21660f66a230SMatthew G. Knepley if (rev < 0) pos = !pos ? PETSC_TRUE : PETSC_FALSE; 21670f66a230SMatthew G. Knepley /* Put faces touching the fault in the label */ 21689566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, support[s], &coneSize)); 21699566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, support[s], &cone)); 2170cd0c2139SMatthew G Knepley for (c = 0; c < coneSize; ++c) { 2171cd0c2139SMatthew G Knepley const PetscInt point = cone[c]; 2172cd0c2139SMatthew G Knepley 21739566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, point, &val)); 2174cd0c2139SMatthew G Knepley if (val == -1) { 2175cd0c2139SMatthew G Knepley PetscInt *closure = NULL; 2176cd0c2139SMatthew G Knepley PetscInt closureSize, cl; 2177cd0c2139SMatthew G Knepley 21789566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(dm, point, PETSC_TRUE, &closureSize, &closure)); 2179cd0c2139SMatthew G Knepley for (cl = 0; cl < closureSize * 2; cl += 2) { 2180cd0c2139SMatthew G Knepley const PetscInt clp = closure[cl]; 2181a0541d8aSMatthew G. Knepley PetscInt bval = -1; 2182cd0c2139SMatthew G Knepley 21839566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, clp, &val)); 21849566063dSJacob Faibussowitsch if (blabel) PetscCall(DMLabelGetValue(blabel, clp, &bval)); 2185a0541d8aSMatthew G. Knepley if ((val >= 0) && (val < dim - 1) && (bval < 0)) { 21869566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(label, point, pos == PETSC_TRUE ? shift + dim - 1 : -(shift + dim - 1))); 2187cd0c2139SMatthew G Knepley break; 2188cd0c2139SMatthew G Knepley } 2189cd0c2139SMatthew G Knepley } 21909566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dm, point, PETSC_TRUE, &closureSize, &closure)); 2191cd0c2139SMatthew G Knepley } 2192cd0c2139SMatthew G Knepley } 2193cd0c2139SMatthew G Knepley } 2194cd0c2139SMatthew G Knepley } 2195accc9626SMatthew G. Knepley PetscCall(ISRestoreIndices(dimIS, &points)); 2196accc9626SMatthew G. Knepley PetscCall(ISDestroy(&dimIS)); 2197a0541d8aSMatthew G. Knepley /* Mark boundary points as unsplit */ 219886200784SMatthew G. Knepley if (blabel) { 2199accc9626SMatthew G. Knepley IS bdIS; 2200accc9626SMatthew G. Knepley 2201caf9e14dSMatthew G. Knepley PetscCall(DMLabelGetStratumIS(blabel, bvalue, &bdIS)); 2202accc9626SMatthew G. Knepley PetscCall(ISGetLocalSize(bdIS, &numPoints)); 2203accc9626SMatthew G. Knepley PetscCall(ISGetIndices(bdIS, &points)); 2204a0541d8aSMatthew G. Knepley for (p = 0; p < numPoints; ++p) { 2205a0541d8aSMatthew G. Knepley const PetscInt point = points[p]; 2206a0541d8aSMatthew G. Knepley PetscInt val, bval; 2207a0541d8aSMatthew G. Knepley 22089566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(blabel, point, &bval)); 2209a0541d8aSMatthew G. Knepley if (bval >= 0) { 22109566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, point, &val)); 2211f7019248SMatthew G. Knepley if ((val < 0) || (val > dim)) { 2212f7019248SMatthew G. Knepley /* This could be a point added from splitting a vertex on an adjacent fault, otherwise its just wrong */ 22139566063dSJacob Faibussowitsch PetscCall(DMLabelClearValue(blabel, point, bval)); 2214f7019248SMatthew G. Knepley } 2215f7019248SMatthew G. Knepley } 2216f7019248SMatthew G. Knepley } 2217f7019248SMatthew G. Knepley for (p = 0; p < numPoints; ++p) { 2218f7019248SMatthew G. Knepley const PetscInt point = points[p]; 2219f7019248SMatthew G. Knepley PetscInt val, bval; 2220f7019248SMatthew G. Knepley 22219566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(blabel, point, &bval)); 2222f7019248SMatthew G. Knepley if (bval >= 0) { 222386200784SMatthew G. Knepley const PetscInt *cone, *support; 222486200784SMatthew G. Knepley PetscInt coneSize, supportSize, s, valA, valB, valE; 222586200784SMatthew G. Knepley 2226a0541d8aSMatthew G. Knepley /* Mark as unsplit */ 22279566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, point, &val)); 2228e1a13daeSMatthew G. Knepley PetscCheck(val >= 0 && val <= dim, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Point %" PetscInt_FMT " has label value %" PetscInt_FMT ", should be part of the fault", point, val); 22299566063dSJacob Faibussowitsch PetscCall(DMLabelClearValue(label, point, val)); 22309566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(label, point, shift2 + val)); 22312c06a818SMatthew G. Knepley /* Check for cross-edge 22322c06a818SMatthew G. Knepley A cross-edge has endpoints which are both on the boundary of the surface, but the edge itself is not. */ 223386200784SMatthew G. Knepley if (val != 0) continue; 22349566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(dm, point, &support)); 22359566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dm, point, &supportSize)); 223686200784SMatthew G. Knepley for (s = 0; s < supportSize; ++s) { 22379566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, support[s], &cone)); 22389566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, support[s], &coneSize)); 223963a3b9bcSJacob Faibussowitsch PetscCheck(coneSize == 2, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Edge %" PetscInt_FMT " has %" PetscInt_FMT " vertices != 2", support[s], coneSize); 22409566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(blabel, cone[0], &valA)); 22419566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(blabel, cone[1], &valB)); 22429566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(blabel, support[s], &valE)); 22439566063dSJacob Faibussowitsch if ((valE < 0) && (valA >= 0) && (valB >= 0) && (cone[0] != cone[1])) PetscCall(DMLabelSetValue(blabel, support[s], 2)); 224486200784SMatthew G. Knepley } 2245a0541d8aSMatthew G. Knepley } 2246a0541d8aSMatthew G. Knepley } 2247accc9626SMatthew G. Knepley PetscCall(ISRestoreIndices(bdIS, &points)); 2248accc9626SMatthew G. Knepley PetscCall(ISDestroy(&bdIS)); 2249a0541d8aSMatthew G. Knepley } 2250b6dfa339SMatthew G. Knepley /* Mark ghost fault cells */ 2251b6dfa339SMatthew G. Knepley { 2252b6dfa339SMatthew G. Knepley PetscSF sf; 2253b6dfa339SMatthew G. Knepley const PetscInt *leaves; 2254b6dfa339SMatthew G. Knepley PetscInt Nl, l; 2255b6dfa339SMatthew G. Knepley 2256b6dfa339SMatthew G. Knepley PetscCall(DMGetPointSF(dm, &sf)); 2257b6dfa339SMatthew G. Knepley PetscCall(PetscSFGetGraph(sf, NULL, &Nl, &leaves, NULL)); 2258accc9626SMatthew G. Knepley PetscCall(DMLabelGetStratumIS(label, dim - 1, &dimIS)); 2259accc9626SMatthew G. Knepley if (!dimIS) goto divide; 2260accc9626SMatthew G. Knepley PetscCall(ISGetLocalSize(dimIS, &numPoints)); 2261accc9626SMatthew G. Knepley PetscCall(ISGetIndices(dimIS, &points)); 2262b6dfa339SMatthew G. Knepley if (Nl > 0) { 2263b6dfa339SMatthew G. Knepley for (p = 0; p < numPoints; ++p) { 2264b6dfa339SMatthew G. Knepley const PetscInt point = points[p]; 2265b6dfa339SMatthew G. Knepley PetscInt val; 2266b6dfa339SMatthew G. Knepley 2267b6dfa339SMatthew G. Knepley PetscCall(PetscFindInt(point, Nl, leaves, &l)); 2268b6dfa339SMatthew G. Knepley if (l >= 0) { 2269b6dfa339SMatthew G. Knepley PetscInt *closure = NULL; 2270b6dfa339SMatthew G. Knepley PetscInt closureSize, cl; 2271b6dfa339SMatthew G. Knepley 2272b6dfa339SMatthew G. Knepley PetscCall(DMLabelGetValue(label, point, &val)); 2273b6dfa339SMatthew G. Knepley PetscCheck((val == dim - 1) || (val == shift2 + dim - 1), PETSC_COMM_SELF, PETSC_ERR_PLIB, "Point %" PetscInt_FMT " has label value %" PetscInt_FMT ", should be a fault face", point, val); 2274b6dfa339SMatthew G. Knepley PetscCall(DMLabelClearValue(label, point, val)); 2275b6dfa339SMatthew G. Knepley PetscCall(DMLabelSetValue(label, point, shift3 + val)); 2276b6dfa339SMatthew G. Knepley PetscCall(DMPlexGetTransitiveClosure(dm, point, PETSC_TRUE, &closureSize, &closure)); 2277accc9626SMatthew G. Knepley for (cl = 2; cl < closureSize * 2; cl += 2) { 2278b6dfa339SMatthew G. Knepley const PetscInt clp = closure[cl]; 2279b6dfa339SMatthew G. Knepley 2280b6dfa339SMatthew G. Knepley PetscCall(DMLabelGetValue(label, clp, &val)); 2281b6dfa339SMatthew G. Knepley PetscCheck(val != -1, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Point %" PetscInt_FMT " is missing from label, but is in the closure of a fault face", point); 2282b6dfa339SMatthew G. Knepley PetscCall(DMLabelClearValue(label, clp, val)); 2283b6dfa339SMatthew G. Knepley PetscCall(DMLabelSetValue(label, clp, shift3 + val)); 2284b6dfa339SMatthew G. Knepley } 2285b6dfa339SMatthew G. Knepley PetscCall(DMPlexRestoreTransitiveClosure(dm, point, PETSC_TRUE, &closureSize, &closure)); 2286b6dfa339SMatthew G. Knepley } 2287b6dfa339SMatthew G. Knepley } 2288b6dfa339SMatthew G. Knepley } 2289b6dfa339SMatthew G. Knepley PetscCall(ISRestoreIndices(dimIS, &points)); 2290b6dfa339SMatthew G. Knepley PetscCall(ISDestroy(&dimIS)); 2291accc9626SMatthew G. Knepley } 2292accc9626SMatthew G. Knepley divide: 2293b6dfa339SMatthew G. Knepley if (subpointIS) PetscCall(ISRestoreIndices(subpointIS, &subpoints)); 2294accc9626SMatthew G. Knepley PetscCall(DMPlexLabelFaultHalo(dm, label)); 2295accc9626SMatthew G. Knepley PetscCall(CheckFaultEdge_Private(dm, label)); 22963ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2297cd0c2139SMatthew G Knepley } 2298cd0c2139SMatthew G Knepley 2299720e594eSMatthew G. Knepley /* Check that no cell have all vertices on the fault */ 230066976f2fSJacob Faibussowitsch static PetscErrorCode DMPlexCheckValidSubmesh_Private(DM dm, DMLabel label, DM subdm) 2301d71ae5a4SJacob Faibussowitsch { 2302720e594eSMatthew G. Knepley IS subpointIS; 2303720e594eSMatthew G. Knepley const PetscInt *dmpoints; 2304720e594eSMatthew G. Knepley PetscInt defaultValue, cStart, cEnd, c, vStart, vEnd; 2305720e594eSMatthew G. Knepley 2306720e594eSMatthew G. Knepley PetscFunctionBegin; 23073ba16761SJacob Faibussowitsch if (!label) PetscFunctionReturn(PETSC_SUCCESS); 23089566063dSJacob Faibussowitsch PetscCall(DMLabelGetDefaultValue(label, &defaultValue)); 23099566063dSJacob Faibussowitsch PetscCall(DMPlexGetSubpointIS(subdm, &subpointIS)); 23103ba16761SJacob Faibussowitsch if (!subpointIS) PetscFunctionReturn(PETSC_SUCCESS); 23119566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(subdm, 0, &cStart, &cEnd)); 23129566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthStratum(dm, 0, &vStart, &vEnd)); 23139566063dSJacob Faibussowitsch PetscCall(ISGetIndices(subpointIS, &dmpoints)); 2314720e594eSMatthew G. Knepley for (c = cStart; c < cEnd; ++c) { 2315720e594eSMatthew G. Knepley PetscBool invalidCell = PETSC_TRUE; 2316720e594eSMatthew G. Knepley PetscInt *closure = NULL; 2317720e594eSMatthew G. Knepley PetscInt closureSize, cl; 2318720e594eSMatthew G. Knepley 23199566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(dm, dmpoints[c], PETSC_TRUE, &closureSize, &closure)); 2320720e594eSMatthew G. Knepley for (cl = 0; cl < closureSize * 2; cl += 2) { 2321720e594eSMatthew G. Knepley PetscInt value = 0; 2322720e594eSMatthew G. Knepley 2323720e594eSMatthew G. Knepley if ((closure[cl] < vStart) || (closure[cl] >= vEnd)) continue; 23249566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, closure[cl], &value)); 23259371c9d4SSatish Balay if (value == defaultValue) { 23269371c9d4SSatish Balay invalidCell = PETSC_FALSE; 23279371c9d4SSatish Balay break; 23289371c9d4SSatish Balay } 2329720e594eSMatthew G. Knepley } 23309566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dm, dmpoints[c], PETSC_TRUE, &closureSize, &closure)); 2331720e594eSMatthew G. Knepley if (invalidCell) { 23329566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(subpointIS, &dmpoints)); 23339566063dSJacob Faibussowitsch PetscCall(ISDestroy(&subpointIS)); 23349566063dSJacob Faibussowitsch PetscCall(DMDestroy(&subdm)); 233563a3b9bcSJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Ambiguous submesh. Cell %" PetscInt_FMT " has all of its vertices on the submesh.", dmpoints[c]); 2336720e594eSMatthew G. Knepley } 2337720e594eSMatthew G. Knepley } 23389566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(subpointIS, &dmpoints)); 23393ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2340720e594eSMatthew G. Knepley } 2341720e594eSMatthew G. Knepley 2342c08575a3SMatthew G. Knepley /*@ 23433cf72582SMatthew G. Knepley DMPlexCreateHybridMesh - Create a mesh with hybrid cells along an internal interface 23443cf72582SMatthew G. Knepley 234520f4b53cSBarry Smith Collective 23463cf72582SMatthew G. Knepley 23473cf72582SMatthew G. Knepley Input Parameters: 234820f4b53cSBarry Smith + dm - The original `DM` 2349720e594eSMatthew G. Knepley . label - The label specifying the interface vertices 2350caf9e14dSMatthew G. Knepley . bdlabel - The optional label specifying the interface boundary vertices 2351caf9e14dSMatthew G. Knepley - bdvalue - Value of optional label specifying the interface boundary vertices 23523cf72582SMatthew G. Knepley 23533cf72582SMatthew G. Knepley Output Parameters: 235420f4b53cSBarry Smith + hybridLabel - The label fully marking the interface, or `NULL` if no output is desired 235520f4b53cSBarry Smith . splitLabel - The label containing the split points, or `NULL` if no output is desired 235620f4b53cSBarry Smith . dmInterface - The new interface `DM`, or `NULL` 235720f4b53cSBarry Smith - dmHybrid - The new `DM` with cohesive cells 23583cf72582SMatthew G. Knepley 235920f4b53cSBarry Smith Level: developer 236020f4b53cSBarry Smith 236120f4b53cSBarry Smith Note: 236220f4b53cSBarry Smith The hybridLabel indicates what parts of the original mesh impinged on the division surface. For points 23636eccb800SMatthew Knepley directly on the division surface, they are labeled with their dimension, so an edge 7 on the division surface would be 23646eccb800SMatthew Knepley 7 (1) in hybridLabel. For points that impinge from the positive side, they are labeled with 100+dim, so an edge 6 with 23656eccb800SMatthew Knepley one vertex 3 on the surface would be 6 (101) and 3 (0) in hybridLabel. If an edge 9 from the negative side of the 23666eccb800SMatthew Knepley surface also hits vertex 3, it would be 9 (-101) in hybridLabel. 23676eccb800SMatthew Knepley 23686eccb800SMatthew Knepley The splitLabel indicates what points in the new hybrid mesh were the result of splitting points in the original 236940cdb708SMatthew Knepley mesh. The label value is $\pm 100+dim$ for each point. For example, if two edges 10 and 14 in the hybrid resulting from 23706eccb800SMatthew Knepley splitting an edge in the original mesh, you would have 10 (101) and 14 (-101) in the splitLabel. 23716eccb800SMatthew Knepley 237220f4b53cSBarry Smith The dmInterface is a `DM` built from the original division surface. It has a label which can be retrieved using 237320f4b53cSBarry Smith `DMPlexGetSubpointMap()` which maps each point back to the point in the surface of the original mesh. 23746eccb800SMatthew Knepley 23751cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexConstructCohesiveCells()`, `DMPlexLabelCohesiveComplete()`, `DMPlexGetSubpointMap()`, `DMCreate()` 23763cf72582SMatthew G. Knepley @*/ 2377d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexCreateHybridMesh(DM dm, DMLabel label, DMLabel bdlabel, PetscInt bdvalue, DMLabel *hybridLabel, DMLabel *splitLabel, DM *dmInterface, DM *dmHybrid) 2378d71ae5a4SJacob Faibussowitsch { 23793cf72582SMatthew G. Knepley DM idm; 23807db7e0a7SMatthew G. Knepley DMLabel subpointMap, hlabel, slabel = NULL; 23813cf72582SMatthew G. Knepley PetscInt dim; 23823cf72582SMatthew G. Knepley 23833cf72582SMatthew G. Knepley PetscFunctionBegin; 23843cf72582SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 23854f572ea9SToby Isaac if (label) PetscAssertPointer(label, 2); 23864f572ea9SToby Isaac if (bdlabel) PetscAssertPointer(bdlabel, 3); 23874f572ea9SToby Isaac if (hybridLabel) PetscAssertPointer(hybridLabel, 5); 23884f572ea9SToby Isaac if (splitLabel) PetscAssertPointer(splitLabel, 6); 23894f572ea9SToby Isaac if (dmInterface) PetscAssertPointer(dmInterface, 7); 23904f572ea9SToby Isaac PetscAssertPointer(dmHybrid, 8); 23919566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 23929566063dSJacob Faibussowitsch PetscCall(DMPlexCreateSubmesh(dm, label, 1, PETSC_FALSE, &idm)); 23939566063dSJacob Faibussowitsch PetscCall(DMPlexCheckValidSubmesh_Private(dm, label, idm)); 23949566063dSJacob Faibussowitsch PetscCall(DMPlexOrient(idm)); 23959566063dSJacob Faibussowitsch PetscCall(DMPlexGetSubpointMap(idm, &subpointMap)); 23969566063dSJacob Faibussowitsch PetscCall(DMLabelDuplicate(subpointMap, &hlabel)); 23979566063dSJacob Faibussowitsch PetscCall(DMLabelClearStratum(hlabel, dim)); 23987db7e0a7SMatthew G. Knepley if (splitLabel) { 23997db7e0a7SMatthew G. Knepley const char *name; 24007db7e0a7SMatthew G. Knepley char sname[PETSC_MAX_PATH_LEN]; 24017db7e0a7SMatthew G. Knepley 24029566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)hlabel, &name)); 2403c6a7a370SJeremy L Thompson PetscCall(PetscStrncpy(sname, name, sizeof(sname))); 2404c6a7a370SJeremy L Thompson PetscCall(PetscStrlcat(sname, " split", sizeof(sname))); 24059566063dSJacob Faibussowitsch PetscCall(DMLabelCreate(PETSC_COMM_SELF, sname, &slabel)); 24067db7e0a7SMatthew G. Knepley } 2407caf9e14dSMatthew G. Knepley PetscCall(DMPlexLabelCohesiveComplete(dm, hlabel, bdlabel, bdvalue, PETSC_FALSE, idm)); 24089371c9d4SSatish Balay if (dmInterface) { 24099371c9d4SSatish Balay *dmInterface = idm; 24109371c9d4SSatish Balay } else PetscCall(DMDestroy(&idm)); 24119566063dSJacob Faibussowitsch PetscCall(DMPlexConstructCohesiveCells(dm, hlabel, slabel, dmHybrid)); 24125de52c6dSVaclav Hapla PetscCall(DMPlexCopy_Internal(dm, PETSC_TRUE, PETSC_TRUE, *dmHybrid)); 24133cf72582SMatthew G. Knepley if (hybridLabel) *hybridLabel = hlabel; 24149566063dSJacob Faibussowitsch else PetscCall(DMLabelDestroy(&hlabel)); 24157db7e0a7SMatthew G. Knepley if (splitLabel) *splitLabel = slabel; 24164a7ee7d0SMatthew G. Knepley { 24174a7ee7d0SMatthew G. Knepley DM cdm; 24184a7ee7d0SMatthew G. Knepley DMLabel ctLabel; 24194a7ee7d0SMatthew G. Knepley 24204a7ee7d0SMatthew G. Knepley /* We need to somehow share the celltype label with the coordinate dm */ 24219566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDM(*dmHybrid, &cdm)); 24229566063dSJacob Faibussowitsch PetscCall(DMPlexGetCellTypeLabel(*dmHybrid, &ctLabel)); 24239566063dSJacob Faibussowitsch PetscCall(DMSetLabel(cdm, ctLabel)); 24244a7ee7d0SMatthew G. Knepley } 24253ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2426cd0c2139SMatthew G Knepley } 2427cd0c2139SMatthew G Knepley 2428efa14ee0SMatthew G Knepley /* Here we need the explicit assumption that: 2429efa14ee0SMatthew G Knepley 2430efa14ee0SMatthew G Knepley For any marked cell, the marked vertices constitute a single face 2431efa14ee0SMatthew G Knepley */ 2432d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexMarkSubmesh_Uninterpolated(DM dm, DMLabel vertexLabel, PetscInt value, DMLabel subpointMap, PetscInt *numFaces, PetscInt *nFV, DM subdm) 2433d71ae5a4SJacob Faibussowitsch { 2434fed694aaSMatthew G. Knepley IS subvertexIS = NULL; 2435efa14ee0SMatthew G Knepley const PetscInt *subvertices; 2436412e9a14SMatthew G. Knepley PetscInt *pStart, *pEnd, pSize; 2437efa14ee0SMatthew G Knepley PetscInt depth, dim, d, numSubVerticesInitial = 0, v; 2438efa14ee0SMatthew G Knepley 2439efa14ee0SMatthew G Knepley PetscFunctionBegin; 2440efa14ee0SMatthew G Knepley *numFaces = 0; 2441efa14ee0SMatthew G Knepley *nFV = 0; 24429566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepth(dm, &depth)); 24439566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 244477d178adSMatthew G. Knepley pSize = PetscMax(depth, dim) + 1; 24459566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(pSize, &pStart, pSize, &pEnd)); 244648a46eb9SPierre Jolivet for (d = 0; d <= depth; ++d) PetscCall(DMPlexGetSimplexOrBoxCells(dm, depth - d, &pStart[d], &pEnd[d])); 2447efa14ee0SMatthew G Knepley /* Loop over initial vertices and mark all faces in the collective star() */ 24489566063dSJacob Faibussowitsch if (vertexLabel) PetscCall(DMLabelGetStratumIS(vertexLabel, value, &subvertexIS)); 2449efa14ee0SMatthew G Knepley if (subvertexIS) { 24509566063dSJacob Faibussowitsch PetscCall(ISGetSize(subvertexIS, &numSubVerticesInitial)); 24519566063dSJacob Faibussowitsch PetscCall(ISGetIndices(subvertexIS, &subvertices)); 2452efa14ee0SMatthew G Knepley } 2453efa14ee0SMatthew G Knepley for (v = 0; v < numSubVerticesInitial; ++v) { 2454efa14ee0SMatthew G Knepley const PetscInt vertex = subvertices[v]; 24550298fd71SBarry Smith PetscInt *star = NULL; 2456efa14ee0SMatthew G Knepley PetscInt starSize, s, numCells = 0, c; 2457efa14ee0SMatthew G Knepley 24589566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(dm, vertex, PETSC_FALSE, &starSize, &star)); 2459efa14ee0SMatthew G Knepley for (s = 0; s < starSize * 2; s += 2) { 2460efa14ee0SMatthew G Knepley const PetscInt point = star[s]; 2461efa14ee0SMatthew G Knepley if ((point >= pStart[depth]) && (point < pEnd[depth])) star[numCells++] = point; 2462efa14ee0SMatthew G Knepley } 2463efa14ee0SMatthew G Knepley for (c = 0; c < numCells; ++c) { 2464efa14ee0SMatthew G Knepley const PetscInt cell = star[c]; 24650298fd71SBarry Smith PetscInt *closure = NULL; 2466efa14ee0SMatthew G Knepley PetscInt closureSize, cl; 2467efa14ee0SMatthew G Knepley PetscInt cellLoc, numCorners = 0, faceSize = 0; 2468efa14ee0SMatthew G Knepley 24699566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(subpointMap, cell, &cellLoc)); 247065560c7fSMatthew G Knepley if (cellLoc == 2) continue; 247163a3b9bcSJacob Faibussowitsch PetscCheck(cellLoc < 0, PetscObjectComm((PetscObject)dm), PETSC_ERR_PLIB, "Cell %" PetscInt_FMT " has dimension %" PetscInt_FMT " in the surface label", cell, cellLoc); 24729566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(dm, cell, PETSC_TRUE, &closureSize, &closure)); 2473efa14ee0SMatthew G Knepley for (cl = 0; cl < closureSize * 2; cl += 2) { 2474efa14ee0SMatthew G Knepley const PetscInt point = closure[cl]; 2475efa14ee0SMatthew G Knepley PetscInt vertexLoc; 2476efa14ee0SMatthew G Knepley 2477efa14ee0SMatthew G Knepley if ((point >= pStart[0]) && (point < pEnd[0])) { 2478efa14ee0SMatthew G Knepley ++numCorners; 24799566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(vertexLabel, point, &vertexLoc)); 2480830e53efSMatthew G. Knepley if (vertexLoc == value) closure[faceSize++] = point; 2481efa14ee0SMatthew G Knepley } 2482efa14ee0SMatthew G Knepley } 24839566063dSJacob Faibussowitsch if (!(*nFV)) PetscCall(DMPlexGetNumFaceVertices(dm, dim, numCorners, nFV)); 248463a3b9bcSJacob Faibussowitsch PetscCheck(faceSize <= *nFV, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Invalid submesh: Too many vertices %" PetscInt_FMT " of an element on the surface", faceSize); 2485efa14ee0SMatthew G Knepley if (faceSize == *nFV) { 2486007baee2SMatthew G. Knepley const PetscInt *cells = NULL; 2487007baee2SMatthew G. Knepley PetscInt numCells, nc; 2488007baee2SMatthew G. Knepley 2489efa14ee0SMatthew G Knepley ++(*numFaces); 249048a46eb9SPierre Jolivet for (cl = 0; cl < faceSize; ++cl) PetscCall(DMLabelSetValue(subpointMap, closure[cl], 0)); 24919566063dSJacob Faibussowitsch PetscCall(DMPlexGetJoin(dm, faceSize, closure, &numCells, &cells)); 249248a46eb9SPierre Jolivet for (nc = 0; nc < numCells; ++nc) PetscCall(DMLabelSetValue(subpointMap, cells[nc], 2)); 24939566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreJoin(dm, faceSize, closure, &numCells, &cells)); 2494efa14ee0SMatthew G Knepley } 24959566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dm, cell, PETSC_TRUE, &closureSize, &closure)); 2496efa14ee0SMatthew G Knepley } 24979566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dm, vertex, PETSC_FALSE, &starSize, &star)); 2498efa14ee0SMatthew G Knepley } 249948a46eb9SPierre Jolivet if (subvertexIS) PetscCall(ISRestoreIndices(subvertexIS, &subvertices)); 25009566063dSJacob Faibussowitsch PetscCall(ISDestroy(&subvertexIS)); 25019566063dSJacob Faibussowitsch PetscCall(PetscFree2(pStart, pEnd)); 25023ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2503efa14ee0SMatthew G Knepley } 2504efa14ee0SMatthew G Knepley 2505d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexMarkSubmesh_Interpolated(DM dm, DMLabel vertexLabel, PetscInt value, PetscBool markedFaces, DMLabel subpointMap, DM subdm) 2506d71ae5a4SJacob Faibussowitsch { 250734b4c39eSMatthew G. Knepley IS subvertexIS = NULL; 2508efa14ee0SMatthew G Knepley const PetscInt *subvertices; 2509412e9a14SMatthew G. Knepley PetscInt *pStart, *pEnd; 2510efa14ee0SMatthew G Knepley PetscInt dim, d, numSubVerticesInitial = 0, v; 2511efa14ee0SMatthew G Knepley 2512efa14ee0SMatthew G Knepley PetscFunctionBegin; 25139566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 25149566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(dim + 1, &pStart, dim + 1, &pEnd)); 251548a46eb9SPierre Jolivet for (d = 0; d <= dim; ++d) PetscCall(DMPlexGetSimplexOrBoxCells(dm, dim - d, &pStart[d], &pEnd[d])); 2516efa14ee0SMatthew G Knepley /* Loop over initial vertices and mark all faces in the collective star() */ 251734b4c39eSMatthew G. Knepley if (vertexLabel) { 25189566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(vertexLabel, value, &subvertexIS)); 2519efa14ee0SMatthew G Knepley if (subvertexIS) { 25209566063dSJacob Faibussowitsch PetscCall(ISGetSize(subvertexIS, &numSubVerticesInitial)); 25219566063dSJacob Faibussowitsch PetscCall(ISGetIndices(subvertexIS, &subvertices)); 2522efa14ee0SMatthew G Knepley } 252334b4c39eSMatthew G. Knepley } 2524efa14ee0SMatthew G Knepley for (v = 0; v < numSubVerticesInitial; ++v) { 2525efa14ee0SMatthew G Knepley const PetscInt vertex = subvertices[v]; 25260298fd71SBarry Smith PetscInt *star = NULL; 2527efa14ee0SMatthew G Knepley PetscInt starSize, s, numFaces = 0, f; 2528efa14ee0SMatthew G Knepley 25299566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(dm, vertex, PETSC_FALSE, &starSize, &star)); 2530efa14ee0SMatthew G Knepley for (s = 0; s < starSize * 2; s += 2) { 2531efa14ee0SMatthew G Knepley const PetscInt point = star[s]; 2532158acfadSMatthew G. Knepley PetscInt faceLoc; 2533158acfadSMatthew G. Knepley 2534158acfadSMatthew G. Knepley if ((point >= pStart[dim - 1]) && (point < pEnd[dim - 1])) { 2535158acfadSMatthew G. Knepley if (markedFaces) { 25369566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(vertexLabel, point, &faceLoc)); 2537158acfadSMatthew G. Knepley if (faceLoc < 0) continue; 2538158acfadSMatthew G. Knepley } 2539158acfadSMatthew G. Knepley star[numFaces++] = point; 2540158acfadSMatthew G. Knepley } 2541efa14ee0SMatthew G Knepley } 2542efa14ee0SMatthew G Knepley for (f = 0; f < numFaces; ++f) { 2543efa14ee0SMatthew G Knepley const PetscInt face = star[f]; 25440298fd71SBarry Smith PetscInt *closure = NULL; 2545efa14ee0SMatthew G Knepley PetscInt closureSize, c; 2546efa14ee0SMatthew G Knepley PetscInt faceLoc; 2547efa14ee0SMatthew G Knepley 25489566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(subpointMap, face, &faceLoc)); 2549efa14ee0SMatthew G Knepley if (faceLoc == dim - 1) continue; 255063a3b9bcSJacob Faibussowitsch PetscCheck(faceLoc < 0, PetscObjectComm((PetscObject)dm), PETSC_ERR_PLIB, "Face %" PetscInt_FMT " has dimension %" PetscInt_FMT " in the surface label", face, faceLoc); 25519566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(dm, face, PETSC_TRUE, &closureSize, &closure)); 2552efa14ee0SMatthew G Knepley for (c = 0; c < closureSize * 2; c += 2) { 2553efa14ee0SMatthew G Knepley const PetscInt point = closure[c]; 2554efa14ee0SMatthew G Knepley PetscInt vertexLoc; 2555efa14ee0SMatthew G Knepley 2556efa14ee0SMatthew G Knepley if ((point >= pStart[0]) && (point < pEnd[0])) { 25579566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(vertexLabel, point, &vertexLoc)); 2558830e53efSMatthew G. Knepley if (vertexLoc != value) break; 2559efa14ee0SMatthew G Knepley } 2560efa14ee0SMatthew G Knepley } 2561efa14ee0SMatthew G Knepley if (c == closureSize * 2) { 2562efa14ee0SMatthew G Knepley const PetscInt *support; 2563efa14ee0SMatthew G Knepley PetscInt supportSize, s; 2564efa14ee0SMatthew G Knepley 2565efa14ee0SMatthew G Knepley for (c = 0; c < closureSize * 2; c += 2) { 2566efa14ee0SMatthew G Knepley const PetscInt point = closure[c]; 2567efa14ee0SMatthew G Knepley 2568efa14ee0SMatthew G Knepley for (d = 0; d < dim; ++d) { 2569efa14ee0SMatthew G Knepley if ((point >= pStart[d]) && (point < pEnd[d])) { 25709566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(subpointMap, point, d)); 2571efa14ee0SMatthew G Knepley break; 2572efa14ee0SMatthew G Knepley } 2573efa14ee0SMatthew G Knepley } 2574efa14ee0SMatthew G Knepley } 25759566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dm, face, &supportSize)); 25769566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(dm, face, &support)); 257748a46eb9SPierre Jolivet for (s = 0; s < supportSize; ++s) PetscCall(DMLabelSetValue(subpointMap, support[s], dim)); 2578efa14ee0SMatthew G Knepley } 25799566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dm, face, PETSC_TRUE, &closureSize, &closure)); 2580efa14ee0SMatthew G Knepley } 25819566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dm, vertex, PETSC_FALSE, &starSize, &star)); 2582efa14ee0SMatthew G Knepley } 25839566063dSJacob Faibussowitsch if (subvertexIS) PetscCall(ISRestoreIndices(subvertexIS, &subvertices)); 25849566063dSJacob Faibussowitsch PetscCall(ISDestroy(&subvertexIS)); 25859566063dSJacob Faibussowitsch PetscCall(PetscFree2(pStart, pEnd)); 25863ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2587efa14ee0SMatthew G Knepley } 2588efa14ee0SMatthew G Knepley 2589d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexMarkCohesiveSubmesh_Uninterpolated(DM dm, PetscBool hasLagrange, const char labelname[], PetscInt value, DMLabel subpointMap, PetscInt *numFaces, PetscInt *nFV, PetscInt *subCells[], DM subdm) 2590d71ae5a4SJacob Faibussowitsch { 259127c04023SMatthew G. Knepley DMLabel label = NULL; 2592766ab985SMatthew G. Knepley const PetscInt *cone; 25939fc93327SToby Isaac PetscInt dim, cMax, cEnd, c, subc = 0, p, coneSize = -1; 2594766ab985SMatthew G. Knepley 2595812bfc34SJed Brown PetscFunctionBegin; 2596c0ed958bSJed Brown *numFaces = 0; 2597c0ed958bSJed Brown *nFV = 0; 25989566063dSJacob Faibussowitsch if (labelname) PetscCall(DMGetLabel(dm, labelname, &label)); 2599fed694aaSMatthew G. Knepley *subCells = NULL; 26009566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 26019566063dSJacob Faibussowitsch PetscCall(DMPlexGetTensorPrismBounds_Internal(dm, dim, &cMax, &cEnd)); 26023ba16761SJacob Faibussowitsch if (cMax < 0) PetscFunctionReturn(PETSC_SUCCESS); 260327c04023SMatthew G. Knepley if (label) { 260427c04023SMatthew G. Knepley for (c = cMax; c < cEnd; ++c) { 260527c04023SMatthew G. Knepley PetscInt val; 260627c04023SMatthew G. Knepley 26079566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, c, &val)); 260827c04023SMatthew G. Knepley if (val == value) { 260927c04023SMatthew G. Knepley ++(*numFaces); 26109566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, c, &coneSize)); 261127c04023SMatthew G. Knepley } 261227c04023SMatthew G. Knepley } 261327c04023SMatthew G. Knepley } else { 2614766ab985SMatthew G. Knepley *numFaces = cEnd - cMax; 26159566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, cMax, &coneSize)); 261627c04023SMatthew G. Knepley } 26179566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(*numFaces * 2, subCells)); 26183ba16761SJacob Faibussowitsch if (!(*numFaces)) PetscFunctionReturn(PETSC_SUCCESS); 26199fc93327SToby Isaac *nFV = hasLagrange ? coneSize / 3 : coneSize / 2; 2620766ab985SMatthew G. Knepley for (c = cMax; c < cEnd; ++c) { 2621766ab985SMatthew G. Knepley const PetscInt *cells; 2622766ab985SMatthew G. Knepley PetscInt numCells; 2623766ab985SMatthew G. Knepley 262427c04023SMatthew G. Knepley if (label) { 262527c04023SMatthew G. Knepley PetscInt val; 262627c04023SMatthew G. Knepley 26279566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, c, &val)); 262827c04023SMatthew G. Knepley if (val != value) continue; 262927c04023SMatthew G. Knepley } 26309566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, c, &cone)); 263148a46eb9SPierre Jolivet for (p = 0; p < *nFV; ++p) PetscCall(DMLabelSetValue(subpointMap, cone[p], 0)); 2632766ab985SMatthew G. Knepley /* Negative face */ 26339566063dSJacob Faibussowitsch PetscCall(DMPlexGetJoin(dm, *nFV, cone, &numCells, &cells)); 263427234c99SMatthew G. Knepley /* Not true in parallel 263508401ef6SPierre Jolivet PetscCheck(numCells == 2,PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Cohesive cells should separate two cells"); */ 2636766ab985SMatthew G. Knepley for (p = 0; p < numCells; ++p) { 26379566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(subpointMap, cells[p], 2)); 263827234c99SMatthew G. Knepley (*subCells)[subc++] = cells[p]; 2639766ab985SMatthew G. Knepley } 26409566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreJoin(dm, *nFV, cone, &numCells, &cells)); 2641766ab985SMatthew G. Knepley /* Positive face is not included */ 2642766ab985SMatthew G. Knepley } 26433ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2644766ab985SMatthew G. Knepley } 2645766ab985SMatthew G. Knepley 2646d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexMarkCohesiveSubmesh_Interpolated(DM dm, DMLabel label, PetscInt value, DMLabel subpointMap, DM subdm) 2647d71ae5a4SJacob Faibussowitsch { 2648766ab985SMatthew G. Knepley PetscInt *pStart, *pEnd; 2649766ab985SMatthew G. Knepley PetscInt dim, cMax, cEnd, c, d; 2650766ab985SMatthew G. Knepley 2651812bfc34SJed Brown PetscFunctionBegin; 26529566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 26539566063dSJacob Faibussowitsch PetscCall(DMPlexGetTensorPrismBounds_Internal(dm, dim, &cMax, &cEnd)); 26543ba16761SJacob Faibussowitsch if (cMax < 0) PetscFunctionReturn(PETSC_SUCCESS); 26559566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(dim + 1, &pStart, dim + 1, &pEnd)); 26569566063dSJacob Faibussowitsch for (d = 0; d <= dim; ++d) PetscCall(DMPlexGetDepthStratum(dm, d, &pStart[d], &pEnd[d])); 2657766ab985SMatthew G. Knepley for (c = cMax; c < cEnd; ++c) { 2658766ab985SMatthew G. Knepley const PetscInt *cone; 2659766ab985SMatthew G. Knepley PetscInt *closure = NULL; 2660b3154360SMatthew G. Knepley PetscInt fconeSize, coneSize, closureSize, cl, val; 2661766ab985SMatthew G. Knepley 266227c04023SMatthew G. Knepley if (label) { 26639566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, c, &val)); 266427c04023SMatthew G. Knepley if (val != value) continue; 266527c04023SMatthew G. Knepley } 26669566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, c, &coneSize)); 26679566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, c, &cone)); 26689566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, cone[0], &fconeSize)); 26691dca8a05SBarry Smith PetscCheck(coneSize == (fconeSize ? fconeSize : 1) + 2, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Cohesive cells should separate two cells"); 2670b3154360SMatthew G. Knepley /* Negative face */ 26719566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(dm, cone[0], PETSC_TRUE, &closureSize, &closure)); 2672766ab985SMatthew G. Knepley for (cl = 0; cl < closureSize * 2; cl += 2) { 2673766ab985SMatthew G. Knepley const PetscInt point = closure[cl]; 2674766ab985SMatthew G. Knepley 2675766ab985SMatthew G. Knepley for (d = 0; d <= dim; ++d) { 2676766ab985SMatthew G. Knepley if ((point >= pStart[d]) && (point < pEnd[d])) { 26779566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(subpointMap, point, d)); 2678766ab985SMatthew G. Knepley break; 2679766ab985SMatthew G. Knepley } 2680766ab985SMatthew G. Knepley } 2681766ab985SMatthew G. Knepley } 26829566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dm, cone[0], PETSC_TRUE, &closureSize, &closure)); 2683766ab985SMatthew G. Knepley /* Cells -- positive face is not included */ 2684766ab985SMatthew G. Knepley for (cl = 0; cl < 1; ++cl) { 2685766ab985SMatthew G. Knepley const PetscInt *support; 2686766ab985SMatthew G. Knepley PetscInt supportSize, s; 2687766ab985SMatthew G. Knepley 26889566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dm, cone[cl], &supportSize)); 268908401ef6SPierre Jolivet /* PetscCheck(supportSize == 2,PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Cohesive faces should separate two cells"); */ 26909566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(dm, cone[cl], &support)); 269148a46eb9SPierre Jolivet for (s = 0; s < supportSize; ++s) PetscCall(DMLabelSetValue(subpointMap, support[s], dim)); 2692766ab985SMatthew G. Knepley } 2693766ab985SMatthew G. Knepley } 26949566063dSJacob Faibussowitsch PetscCall(PetscFree2(pStart, pEnd)); 26953ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2696766ab985SMatthew G. Knepley } 2697766ab985SMatthew G. Knepley 2698d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexGetFaceOrientation(DM dm, PetscInt cell, PetscInt numCorners, PetscInt indices[], PetscInt oppositeVertex, PetscInt origVertices[], PetscInt faceVertices[], PetscBool *posOriented) 2699d71ae5a4SJacob Faibussowitsch { 270082f516ccSBarry Smith MPI_Comm comm; 2701e6ccafaeSMatthew G Knepley PetscBool posOrient = PETSC_FALSE; 2702e6ccafaeSMatthew G Knepley const PetscInt debug = 0; 2703e6ccafaeSMatthew G Knepley PetscInt cellDim, faceSize, f; 2704e6ccafaeSMatthew G Knepley 270582f516ccSBarry Smith PetscFunctionBegin; 27069566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)dm, &comm)); 27079566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &cellDim)); 270863a3b9bcSJacob Faibussowitsch if (debug) PetscCall(PetscPrintf(comm, "cellDim: %" PetscInt_FMT " numCorners: %" PetscInt_FMT "\n", cellDim, numCorners)); 2709e6ccafaeSMatthew G Knepley 2710ddeab2a6SMatthew G. Knepley if (cellDim == 1 && numCorners == 2) { 2711ddeab2a6SMatthew G. Knepley /* Triangle */ 2712e6ccafaeSMatthew G Knepley faceSize = numCorners - 1; 2713e6ccafaeSMatthew G Knepley posOrient = !(oppositeVertex % 2) ? PETSC_TRUE : PETSC_FALSE; 2714ddeab2a6SMatthew G. Knepley } else if (cellDim == 2 && numCorners == 3) { 2715ddeab2a6SMatthew G. Knepley /* Triangle */ 2716ddeab2a6SMatthew G. Knepley faceSize = numCorners - 1; 2717ddeab2a6SMatthew G. Knepley posOrient = !(oppositeVertex % 2) ? PETSC_TRUE : PETSC_FALSE; 2718ddeab2a6SMatthew G. Knepley } else if (cellDim == 3 && numCorners == 4) { 2719ddeab2a6SMatthew G. Knepley /* Tetrahedron */ 2720ddeab2a6SMatthew G. Knepley faceSize = numCorners - 1; 2721ddeab2a6SMatthew G. Knepley posOrient = (oppositeVertex % 2) ? PETSC_TRUE : PETSC_FALSE; 2722e6ccafaeSMatthew G Knepley } else if (cellDim == 1 && numCorners == 3) { 2723e6ccafaeSMatthew G Knepley /* Quadratic line */ 2724e6ccafaeSMatthew G Knepley faceSize = 1; 2725e6ccafaeSMatthew G Knepley posOrient = PETSC_TRUE; 2726e6ccafaeSMatthew G Knepley } else if (cellDim == 2 && numCorners == 4) { 2727e6ccafaeSMatthew G Knepley /* Quads */ 2728e6ccafaeSMatthew G Knepley faceSize = 2; 2729e6ccafaeSMatthew G Knepley if ((indices[1] > indices[0]) && (indices[1] - indices[0] == 1)) { 2730e6ccafaeSMatthew G Knepley posOrient = PETSC_TRUE; 2731e6ccafaeSMatthew G Knepley } else if ((indices[0] == 3) && (indices[1] == 0)) { 2732e6ccafaeSMatthew G Knepley posOrient = PETSC_TRUE; 2733e6ccafaeSMatthew G Knepley } else { 2734e6ccafaeSMatthew G Knepley if (((indices[0] > indices[1]) && (indices[0] - indices[1] == 1)) || ((indices[0] == 0) && (indices[1] == 3))) { 2735e6ccafaeSMatthew G Knepley posOrient = PETSC_FALSE; 2736e6ccafaeSMatthew G Knepley } else SETERRQ(comm, PETSC_ERR_ARG_WRONG, "Invalid quad crossedge"); 2737e6ccafaeSMatthew G Knepley } 2738e6ccafaeSMatthew G Knepley } else if (cellDim == 2 && numCorners == 6) { 2739e6ccafaeSMatthew G Knepley /* Quadratic triangle (I hate this) */ 2740e6ccafaeSMatthew G Knepley /* Edges are determined by the first 2 vertices (corners of edges) */ 2741e6ccafaeSMatthew G Knepley const PetscInt faceSizeTri = 3; 2742e6ccafaeSMatthew G Knepley PetscInt sortedIndices[3], i, iFace; 2743e6ccafaeSMatthew G Knepley PetscBool found = PETSC_FALSE; 2744e6ccafaeSMatthew G Knepley PetscInt faceVerticesTriSorted[9] = { 2745e6ccafaeSMatthew G Knepley 0, 3, 4, /* bottom */ 2746e6ccafaeSMatthew G Knepley 1, 4, 5, /* right */ 2747e6ccafaeSMatthew G Knepley 2, 3, 5, /* left */ 2748e6ccafaeSMatthew G Knepley }; 2749e6ccafaeSMatthew G Knepley PetscInt faceVerticesTri[9] = { 2750e6ccafaeSMatthew G Knepley 0, 3, 4, /* bottom */ 2751e6ccafaeSMatthew G Knepley 1, 4, 5, /* right */ 2752e6ccafaeSMatthew G Knepley 2, 5, 3, /* left */ 2753e6ccafaeSMatthew G Knepley }; 2754e6ccafaeSMatthew G Knepley 2755e6ccafaeSMatthew G Knepley for (i = 0; i < faceSizeTri; ++i) sortedIndices[i] = indices[i]; 27569566063dSJacob Faibussowitsch PetscCall(PetscSortInt(faceSizeTri, sortedIndices)); 2757e6ccafaeSMatthew G Knepley for (iFace = 0; iFace < 3; ++iFace) { 2758e6ccafaeSMatthew G Knepley const PetscInt ii = iFace * faceSizeTri; 2759e6ccafaeSMatthew G Knepley PetscInt fVertex, cVertex; 2760e6ccafaeSMatthew G Knepley 27619371c9d4SSatish Balay if ((sortedIndices[0] == faceVerticesTriSorted[ii + 0]) && (sortedIndices[1] == faceVerticesTriSorted[ii + 1])) { 2762e6ccafaeSMatthew G Knepley for (fVertex = 0; fVertex < faceSizeTri; ++fVertex) { 2763e6ccafaeSMatthew G Knepley for (cVertex = 0; cVertex < faceSizeTri; ++cVertex) { 2764e6ccafaeSMatthew G Knepley if (indices[cVertex] == faceVerticesTri[ii + fVertex]) { 2765e6ccafaeSMatthew G Knepley faceVertices[fVertex] = origVertices[cVertex]; 2766e6ccafaeSMatthew G Knepley break; 2767e6ccafaeSMatthew G Knepley } 2768e6ccafaeSMatthew G Knepley } 2769e6ccafaeSMatthew G Knepley } 2770e6ccafaeSMatthew G Knepley found = PETSC_TRUE; 2771e6ccafaeSMatthew G Knepley break; 2772e6ccafaeSMatthew G Knepley } 2773e6ccafaeSMatthew G Knepley } 277428b400f6SJacob Faibussowitsch PetscCheck(found, comm, PETSC_ERR_ARG_WRONG, "Invalid tri crossface"); 2775e6ccafaeSMatthew G Knepley if (posOriented) *posOriented = PETSC_TRUE; 27763ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2777e6ccafaeSMatthew G Knepley } else if (cellDim == 2 && numCorners == 9) { 2778e6ccafaeSMatthew G Knepley /* Quadratic quad (I hate this) */ 2779e6ccafaeSMatthew G Knepley /* Edges are determined by the first 2 vertices (corners of edges) */ 2780e6ccafaeSMatthew G Knepley const PetscInt faceSizeQuad = 3; 2781e6ccafaeSMatthew G Knepley PetscInt sortedIndices[3], i, iFace; 2782e6ccafaeSMatthew G Knepley PetscBool found = PETSC_FALSE; 2783e6ccafaeSMatthew G Knepley PetscInt faceVerticesQuadSorted[12] = { 2784e6ccafaeSMatthew G Knepley 0, 1, 4, /* bottom */ 2785e6ccafaeSMatthew G Knepley 1, 2, 5, /* right */ 2786e6ccafaeSMatthew G Knepley 2, 3, 6, /* top */ 2787e6ccafaeSMatthew G Knepley 0, 3, 7, /* left */ 2788e6ccafaeSMatthew G Knepley }; 2789e6ccafaeSMatthew G Knepley PetscInt faceVerticesQuad[12] = { 2790e6ccafaeSMatthew G Knepley 0, 1, 4, /* bottom */ 2791e6ccafaeSMatthew G Knepley 1, 2, 5, /* right */ 2792e6ccafaeSMatthew G Knepley 2, 3, 6, /* top */ 2793e6ccafaeSMatthew G Knepley 3, 0, 7, /* left */ 2794e6ccafaeSMatthew G Knepley }; 2795e6ccafaeSMatthew G Knepley 2796e6ccafaeSMatthew G Knepley for (i = 0; i < faceSizeQuad; ++i) sortedIndices[i] = indices[i]; 27979566063dSJacob Faibussowitsch PetscCall(PetscSortInt(faceSizeQuad, sortedIndices)); 2798e6ccafaeSMatthew G Knepley for (iFace = 0; iFace < 4; ++iFace) { 2799e6ccafaeSMatthew G Knepley const PetscInt ii = iFace * faceSizeQuad; 2800e6ccafaeSMatthew G Knepley PetscInt fVertex, cVertex; 2801e6ccafaeSMatthew G Knepley 28029371c9d4SSatish Balay if ((sortedIndices[0] == faceVerticesQuadSorted[ii + 0]) && (sortedIndices[1] == faceVerticesQuadSorted[ii + 1])) { 2803e6ccafaeSMatthew G Knepley for (fVertex = 0; fVertex < faceSizeQuad; ++fVertex) { 2804e6ccafaeSMatthew G Knepley for (cVertex = 0; cVertex < faceSizeQuad; ++cVertex) { 2805e6ccafaeSMatthew G Knepley if (indices[cVertex] == faceVerticesQuad[ii + fVertex]) { 2806e6ccafaeSMatthew G Knepley faceVertices[fVertex] = origVertices[cVertex]; 2807e6ccafaeSMatthew G Knepley break; 2808e6ccafaeSMatthew G Knepley } 2809e6ccafaeSMatthew G Knepley } 2810e6ccafaeSMatthew G Knepley } 2811e6ccafaeSMatthew G Knepley found = PETSC_TRUE; 2812e6ccafaeSMatthew G Knepley break; 2813e6ccafaeSMatthew G Knepley } 2814e6ccafaeSMatthew G Knepley } 281528b400f6SJacob Faibussowitsch PetscCheck(found, comm, PETSC_ERR_ARG_WRONG, "Invalid quad crossface"); 2816e6ccafaeSMatthew G Knepley if (posOriented) *posOriented = PETSC_TRUE; 28173ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2818e6ccafaeSMatthew G Knepley } else if (cellDim == 3 && numCorners == 8) { 2819e6ccafaeSMatthew G Knepley /* Hexes 2820e6ccafaeSMatthew G Knepley A hex is two oriented quads with the normal of the first 2821e6ccafaeSMatthew G Knepley pointing up at the second. 2822e6ccafaeSMatthew G Knepley 2823e6ccafaeSMatthew G Knepley 7---6 2824e6ccafaeSMatthew G Knepley /| /| 2825e6ccafaeSMatthew G Knepley 4---5 | 2826ddeab2a6SMatthew G. Knepley | 1-|-2 2827e6ccafaeSMatthew G Knepley |/ |/ 2828ddeab2a6SMatthew G. Knepley 0---3 2829e6ccafaeSMatthew G Knepley 2830e6ccafaeSMatthew G Knepley Faces are determined by the first 4 vertices (corners of faces) */ 2831e6ccafaeSMatthew G Knepley const PetscInt faceSizeHex = 4; 2832e6ccafaeSMatthew G Knepley PetscInt sortedIndices[4], i, iFace; 2833e6ccafaeSMatthew G Knepley PetscBool found = PETSC_FALSE; 2834e6ccafaeSMatthew G Knepley PetscInt faceVerticesHexSorted[24] = { 2835e6ccafaeSMatthew G Knepley 0, 1, 2, 3, /* bottom */ 2836e6ccafaeSMatthew G Knepley 4, 5, 6, 7, /* top */ 2837ddeab2a6SMatthew G. Knepley 0, 3, 4, 5, /* front */ 2838ddeab2a6SMatthew G. Knepley 2, 3, 5, 6, /* right */ 2839ddeab2a6SMatthew G. Knepley 1, 2, 6, 7, /* back */ 2840ddeab2a6SMatthew G. Knepley 0, 1, 4, 7, /* left */ 2841e6ccafaeSMatthew G Knepley }; 2842e6ccafaeSMatthew G Knepley PetscInt faceVerticesHex[24] = { 2843ddeab2a6SMatthew G. Knepley 1, 2, 3, 0, /* bottom */ 2844e6ccafaeSMatthew G Knepley 4, 5, 6, 7, /* top */ 2845ddeab2a6SMatthew G. Knepley 0, 3, 5, 4, /* front */ 2846ddeab2a6SMatthew G. Knepley 3, 2, 6, 5, /* right */ 2847ddeab2a6SMatthew G. Knepley 2, 1, 7, 6, /* back */ 2848ddeab2a6SMatthew G. Knepley 1, 0, 4, 7, /* left */ 2849e6ccafaeSMatthew G Knepley }; 2850e6ccafaeSMatthew G Knepley 2851e6ccafaeSMatthew G Knepley for (i = 0; i < faceSizeHex; ++i) sortedIndices[i] = indices[i]; 28529566063dSJacob Faibussowitsch PetscCall(PetscSortInt(faceSizeHex, sortedIndices)); 2853e6ccafaeSMatthew G Knepley for (iFace = 0; iFace < 6; ++iFace) { 2854e6ccafaeSMatthew G Knepley const PetscInt ii = iFace * faceSizeHex; 2855e6ccafaeSMatthew G Knepley PetscInt fVertex, cVertex; 2856e6ccafaeSMatthew G Knepley 28579371c9d4SSatish Balay if ((sortedIndices[0] == faceVerticesHexSorted[ii + 0]) && (sortedIndices[1] == faceVerticesHexSorted[ii + 1]) && (sortedIndices[2] == faceVerticesHexSorted[ii + 2]) && (sortedIndices[3] == faceVerticesHexSorted[ii + 3])) { 2858e6ccafaeSMatthew G Knepley for (fVertex = 0; fVertex < faceSizeHex; ++fVertex) { 2859e6ccafaeSMatthew G Knepley for (cVertex = 0; cVertex < faceSizeHex; ++cVertex) { 2860e6ccafaeSMatthew G Knepley if (indices[cVertex] == faceVerticesHex[ii + fVertex]) { 2861e6ccafaeSMatthew G Knepley faceVertices[fVertex] = origVertices[cVertex]; 2862e6ccafaeSMatthew G Knepley break; 2863e6ccafaeSMatthew G Knepley } 2864e6ccafaeSMatthew G Knepley } 2865e6ccafaeSMatthew G Knepley } 2866e6ccafaeSMatthew G Knepley found = PETSC_TRUE; 2867e6ccafaeSMatthew G Knepley break; 2868e6ccafaeSMatthew G Knepley } 2869e6ccafaeSMatthew G Knepley } 287028b400f6SJacob Faibussowitsch PetscCheck(found, comm, PETSC_ERR_ARG_WRONG, "Invalid hex crossface"); 2871e6ccafaeSMatthew G Knepley if (posOriented) *posOriented = PETSC_TRUE; 28723ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2873e6ccafaeSMatthew G Knepley } else if (cellDim == 3 && numCorners == 10) { 2874e6ccafaeSMatthew G Knepley /* Quadratic tet */ 2875e6ccafaeSMatthew G Knepley /* Faces are determined by the first 3 vertices (corners of faces) */ 2876e6ccafaeSMatthew G Knepley const PetscInt faceSizeTet = 6; 2877e6ccafaeSMatthew G Knepley PetscInt sortedIndices[6], i, iFace; 2878e6ccafaeSMatthew G Knepley PetscBool found = PETSC_FALSE; 2879e6ccafaeSMatthew G Knepley PetscInt faceVerticesTetSorted[24] = { 2880e6ccafaeSMatthew G Knepley 0, 1, 2, 6, 7, 8, /* bottom */ 2881e6ccafaeSMatthew G Knepley 0, 3, 4, 6, 7, 9, /* front */ 2882e6ccafaeSMatthew G Knepley 1, 4, 5, 7, 8, 9, /* right */ 2883e6ccafaeSMatthew G Knepley 2, 3, 5, 6, 8, 9, /* left */ 2884e6ccafaeSMatthew G Knepley }; 2885e6ccafaeSMatthew G Knepley PetscInt faceVerticesTet[24] = { 2886e6ccafaeSMatthew G Knepley 0, 1, 2, 6, 7, 8, /* bottom */ 2887e6ccafaeSMatthew G Knepley 0, 4, 3, 6, 7, 9, /* front */ 2888e6ccafaeSMatthew G Knepley 1, 5, 4, 7, 8, 9, /* right */ 2889e6ccafaeSMatthew G Knepley 2, 3, 5, 8, 6, 9, /* left */ 2890e6ccafaeSMatthew G Knepley }; 2891e6ccafaeSMatthew G Knepley 2892e6ccafaeSMatthew G Knepley for (i = 0; i < faceSizeTet; ++i) sortedIndices[i] = indices[i]; 28939566063dSJacob Faibussowitsch PetscCall(PetscSortInt(faceSizeTet, sortedIndices)); 2894e6ccafaeSMatthew G Knepley for (iFace = 0; iFace < 4; ++iFace) { 2895e6ccafaeSMatthew G Knepley const PetscInt ii = iFace * faceSizeTet; 2896e6ccafaeSMatthew G Knepley PetscInt fVertex, cVertex; 2897e6ccafaeSMatthew G Knepley 28989371c9d4SSatish Balay if ((sortedIndices[0] == faceVerticesTetSorted[ii + 0]) && (sortedIndices[1] == faceVerticesTetSorted[ii + 1]) && (sortedIndices[2] == faceVerticesTetSorted[ii + 2]) && (sortedIndices[3] == faceVerticesTetSorted[ii + 3])) { 2899e6ccafaeSMatthew G Knepley for (fVertex = 0; fVertex < faceSizeTet; ++fVertex) { 2900e6ccafaeSMatthew G Knepley for (cVertex = 0; cVertex < faceSizeTet; ++cVertex) { 2901e6ccafaeSMatthew G Knepley if (indices[cVertex] == faceVerticesTet[ii + fVertex]) { 2902e6ccafaeSMatthew G Knepley faceVertices[fVertex] = origVertices[cVertex]; 2903e6ccafaeSMatthew G Knepley break; 2904e6ccafaeSMatthew G Knepley } 2905e6ccafaeSMatthew G Knepley } 2906e6ccafaeSMatthew G Knepley } 2907e6ccafaeSMatthew G Knepley found = PETSC_TRUE; 2908e6ccafaeSMatthew G Knepley break; 2909e6ccafaeSMatthew G Knepley } 2910e6ccafaeSMatthew G Knepley } 291128b400f6SJacob Faibussowitsch PetscCheck(found, comm, PETSC_ERR_ARG_WRONG, "Invalid tet crossface"); 2912e6ccafaeSMatthew G Knepley if (posOriented) *posOriented = PETSC_TRUE; 29133ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2914e6ccafaeSMatthew G Knepley } else if (cellDim == 3 && numCorners == 27) { 2915e6ccafaeSMatthew G Knepley /* Quadratic hexes (I hate this) 2916e6ccafaeSMatthew G Knepley A hex is two oriented quads with the normal of the first 2917e6ccafaeSMatthew G Knepley pointing up at the second. 2918e6ccafaeSMatthew G Knepley 2919e6ccafaeSMatthew G Knepley 7---6 2920e6ccafaeSMatthew G Knepley /| /| 2921e6ccafaeSMatthew G Knepley 4---5 | 2922e6ccafaeSMatthew G Knepley | 3-|-2 2923e6ccafaeSMatthew G Knepley |/ |/ 2924e6ccafaeSMatthew G Knepley 0---1 2925e6ccafaeSMatthew G Knepley 2926e6ccafaeSMatthew G Knepley Faces are determined by the first 4 vertices (corners of faces) */ 2927e6ccafaeSMatthew G Knepley const PetscInt faceSizeQuadHex = 9; 2928e6ccafaeSMatthew G Knepley PetscInt sortedIndices[9], i, iFace; 2929e6ccafaeSMatthew G Knepley PetscBool found = PETSC_FALSE; 2930e6ccafaeSMatthew G Knepley PetscInt faceVerticesQuadHexSorted[54] = { 2931e6ccafaeSMatthew G Knepley 0, 1, 2, 3, 8, 9, 10, 11, 24, /* bottom */ 2932e6ccafaeSMatthew G Knepley 4, 5, 6, 7, 12, 13, 14, 15, 25, /* top */ 2933e6ccafaeSMatthew G Knepley 0, 1, 4, 5, 8, 12, 16, 17, 22, /* front */ 2934e6ccafaeSMatthew G Knepley 1, 2, 5, 6, 9, 13, 17, 18, 21, /* right */ 2935e6ccafaeSMatthew G Knepley 2, 3, 6, 7, 10, 14, 18, 19, 23, /* back */ 2936e6ccafaeSMatthew G Knepley 0, 3, 4, 7, 11, 15, 16, 19, 20, /* left */ 2937e6ccafaeSMatthew G Knepley }; 2938e6ccafaeSMatthew G Knepley PetscInt faceVerticesQuadHex[54] = { 2939e6ccafaeSMatthew G Knepley 3, 2, 1, 0, 10, 9, 8, 11, 24, /* bottom */ 2940e6ccafaeSMatthew G Knepley 4, 5, 6, 7, 12, 13, 14, 15, 25, /* top */ 2941e6ccafaeSMatthew G Knepley 0, 1, 5, 4, 8, 17, 12, 16, 22, /* front */ 2942e6ccafaeSMatthew G Knepley 1, 2, 6, 5, 9, 18, 13, 17, 21, /* right */ 2943e6ccafaeSMatthew G Knepley 2, 3, 7, 6, 10, 19, 14, 18, 23, /* back */ 2944e6ccafaeSMatthew G Knepley 3, 0, 4, 7, 11, 16, 15, 19, 20 /* left */ 2945e6ccafaeSMatthew G Knepley }; 2946e6ccafaeSMatthew G Knepley 2947e6ccafaeSMatthew G Knepley for (i = 0; i < faceSizeQuadHex; ++i) sortedIndices[i] = indices[i]; 29489566063dSJacob Faibussowitsch PetscCall(PetscSortInt(faceSizeQuadHex, sortedIndices)); 2949e6ccafaeSMatthew G Knepley for (iFace = 0; iFace < 6; ++iFace) { 2950e6ccafaeSMatthew G Knepley const PetscInt ii = iFace * faceSizeQuadHex; 2951e6ccafaeSMatthew G Knepley PetscInt fVertex, cVertex; 2952e6ccafaeSMatthew G Knepley 29539371c9d4SSatish Balay if ((sortedIndices[0] == faceVerticesQuadHexSorted[ii + 0]) && (sortedIndices[1] == faceVerticesQuadHexSorted[ii + 1]) && (sortedIndices[2] == faceVerticesQuadHexSorted[ii + 2]) && (sortedIndices[3] == faceVerticesQuadHexSorted[ii + 3])) { 2954e6ccafaeSMatthew G Knepley for (fVertex = 0; fVertex < faceSizeQuadHex; ++fVertex) { 2955e6ccafaeSMatthew G Knepley for (cVertex = 0; cVertex < faceSizeQuadHex; ++cVertex) { 2956e6ccafaeSMatthew G Knepley if (indices[cVertex] == faceVerticesQuadHex[ii + fVertex]) { 2957e6ccafaeSMatthew G Knepley faceVertices[fVertex] = origVertices[cVertex]; 2958e6ccafaeSMatthew G Knepley break; 2959e6ccafaeSMatthew G Knepley } 2960e6ccafaeSMatthew G Knepley } 2961e6ccafaeSMatthew G Knepley } 2962e6ccafaeSMatthew G Knepley found = PETSC_TRUE; 2963e6ccafaeSMatthew G Knepley break; 2964e6ccafaeSMatthew G Knepley } 2965e6ccafaeSMatthew G Knepley } 296628b400f6SJacob Faibussowitsch PetscCheck(found, comm, PETSC_ERR_ARG_WRONG, "Invalid hex crossface"); 2967e6ccafaeSMatthew G Knepley if (posOriented) *posOriented = PETSC_TRUE; 29683ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2969e6ccafaeSMatthew G Knepley } else SETERRQ(comm, PETSC_ERR_ARG_WRONG, "Unknown cell type for faceOrientation()."); 2970e6ccafaeSMatthew G Knepley if (!posOrient) { 29719566063dSJacob Faibussowitsch if (debug) PetscCall(PetscPrintf(comm, " Reversing initial face orientation\n")); 2972e6ccafaeSMatthew G Knepley for (f = 0; f < faceSize; ++f) faceVertices[f] = origVertices[faceSize - 1 - f]; 2973e6ccafaeSMatthew G Knepley } else { 29749566063dSJacob Faibussowitsch if (debug) PetscCall(PetscPrintf(comm, " Keeping initial face orientation\n")); 2975e6ccafaeSMatthew G Knepley for (f = 0; f < faceSize; ++f) faceVertices[f] = origVertices[f]; 2976e6ccafaeSMatthew G Knepley } 2977e6ccafaeSMatthew G Knepley if (posOriented) *posOriented = posOrient; 29783ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2979e6ccafaeSMatthew G Knepley } 2980e6ccafaeSMatthew G Knepley 2981c08575a3SMatthew G. Knepley /*@ 2982c08575a3SMatthew G. Knepley DMPlexGetOrientedFace - Given a cell and a face, as a set of vertices, return the oriented face, as a set of vertices, 2983c08575a3SMatthew G. Knepley in faceVertices. The orientation is such that the face normal points out of the cell 2984c08575a3SMatthew G. Knepley 298520f4b53cSBarry Smith Not Collective 2986c08575a3SMatthew G. Knepley 2987c08575a3SMatthew G. Knepley Input Parameters: 2988c08575a3SMatthew G. Knepley + dm - The original mesh 2989c08575a3SMatthew G. Knepley . cell - The cell mesh point 2990c08575a3SMatthew G. Knepley . faceSize - The number of vertices on the face 2991c08575a3SMatthew G. Knepley . face - The face vertices 2992c08575a3SMatthew G. Knepley . numCorners - The number of vertices on the cell 2993c08575a3SMatthew G. Knepley . indices - Local numbering of face vertices in cell cone 2994c08575a3SMatthew G. Knepley - origVertices - Original face vertices 2995c08575a3SMatthew G. Knepley 2996d8d19677SJose E. Roman Output Parameters: 2997c08575a3SMatthew G. Knepley + faceVertices - The face vertices properly oriented 299820f4b53cSBarry Smith - posOriented - `PETSC_TRUE` if the face was oriented with outward normal 2999c08575a3SMatthew G. Knepley 3000c08575a3SMatthew G. Knepley Level: developer 3001c08575a3SMatthew G. Knepley 30021cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexGetCone()` 3003c08575a3SMatthew G. Knepley @*/ 3004d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexGetOrientedFace(DM dm, PetscInt cell, PetscInt faceSize, const PetscInt face[], PetscInt numCorners, PetscInt indices[], PetscInt origVertices[], PetscInt faceVertices[], PetscBool *posOriented) 3005d71ae5a4SJacob Faibussowitsch { 30060298fd71SBarry Smith const PetscInt *cone = NULL; 3007e6ccafaeSMatthew G Knepley PetscInt coneSize, v, f, v2; 3008e6ccafaeSMatthew G Knepley PetscInt oppositeVertex = -1; 3009e6ccafaeSMatthew G Knepley 3010e6ccafaeSMatthew G Knepley PetscFunctionBegin; 30119566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, cell, &coneSize)); 30129566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, cell, &cone)); 3013e6ccafaeSMatthew G Knepley for (v = 0, v2 = 0; v < coneSize; ++v) { 3014e6ccafaeSMatthew G Knepley PetscBool found = PETSC_FALSE; 3015e6ccafaeSMatthew G Knepley 3016e6ccafaeSMatthew G Knepley for (f = 0; f < faceSize; ++f) { 3017e6ccafaeSMatthew G Knepley if (face[f] == cone[v]) { 30189371c9d4SSatish Balay found = PETSC_TRUE; 30199371c9d4SSatish Balay break; 3020e6ccafaeSMatthew G Knepley } 3021e6ccafaeSMatthew G Knepley } 3022e6ccafaeSMatthew G Knepley if (found) { 3023e6ccafaeSMatthew G Knepley indices[v2] = v; 3024e6ccafaeSMatthew G Knepley origVertices[v2] = cone[v]; 3025e6ccafaeSMatthew G Knepley ++v2; 3026e6ccafaeSMatthew G Knepley } else { 3027e6ccafaeSMatthew G Knepley oppositeVertex = v; 3028e6ccafaeSMatthew G Knepley } 3029e6ccafaeSMatthew G Knepley } 30309566063dSJacob Faibussowitsch PetscCall(DMPlexGetFaceOrientation(dm, cell, numCorners, indices, oppositeVertex, origVertices, faceVertices, posOriented)); 30313ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3032e6ccafaeSMatthew G Knepley } 3033e6ccafaeSMatthew G Knepley 3034e6ccafaeSMatthew G Knepley /* 3035cd0c2139SMatthew G Knepley DMPlexInsertFace_Internal - Puts a face into the mesh 3036e6ccafaeSMatthew G Knepley 303720f4b53cSBarry Smith Not Collective 3038e6ccafaeSMatthew G Knepley 3039e6ccafaeSMatthew G Knepley Input Parameters: 304020f4b53cSBarry Smith + dm - The `DMPLEX` 3041e6ccafaeSMatthew G Knepley . numFaceVertex - The number of vertices in the face 304220f4b53cSBarry Smith . faceVertices - The vertices in the face for `dm` 3043e6ccafaeSMatthew G Knepley . subfaceVertices - The vertices in the face for subdm 304420f4b53cSBarry Smith . numCorners - The number of vertices in the `cell` 304520f4b53cSBarry Smith . cell - A cell in `dm` containing the face 3046e6ccafaeSMatthew G Knepley . subcell - A cell in subdm containing the face 3047e6ccafaeSMatthew G Knepley . firstFace - First face in the mesh 3048e6ccafaeSMatthew G Knepley - newFacePoint - Next face in the mesh 3049e6ccafaeSMatthew G Knepley 30502fe279fdSBarry Smith Output Parameter: 3051e6ccafaeSMatthew G Knepley . newFacePoint - Contains next face point number on input, updated on output 3052e6ccafaeSMatthew G Knepley 3053e6ccafaeSMatthew G Knepley Level: developer 3054e6ccafaeSMatthew G Knepley */ 3055d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexInsertFace_Internal(DM dm, DM subdm, PetscInt numFaceVertices, const PetscInt faceVertices[], const PetscInt subfaceVertices[], PetscInt numCorners, PetscInt cell, PetscInt subcell, PetscInt firstFace, PetscInt *newFacePoint) 3056d71ae5a4SJacob Faibussowitsch { 305782f516ccSBarry Smith MPI_Comm comm; 3058e6ccafaeSMatthew G Knepley DM_Plex *submesh = (DM_Plex *)subdm->data; 3059e6ccafaeSMatthew G Knepley const PetscInt *faces; 3060e6ccafaeSMatthew G Knepley PetscInt numFaces, coneSize; 3061e6ccafaeSMatthew G Knepley 3062e6ccafaeSMatthew G Knepley PetscFunctionBegin; 30639566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)dm, &comm)); 30649566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(subdm, subcell, &coneSize)); 306563a3b9bcSJacob Faibussowitsch PetscCheck(coneSize == 1, comm, PETSC_ERR_ARG_OUTOFRANGE, "Cone size of cell %" PetscInt_FMT " is %" PetscInt_FMT " != 1", cell, coneSize); 3066e6ccafaeSMatthew G Knepley #if 0 3067e6ccafaeSMatthew G Knepley /* Cannot use this because support() has not been constructed yet */ 30689566063dSJacob Faibussowitsch PetscCall(DMPlexGetJoin(subdm, numFaceVertices, subfaceVertices, &numFaces, &faces)); 3069e6ccafaeSMatthew G Knepley #else 3070e6ccafaeSMatthew G Knepley { 3071e6ccafaeSMatthew G Knepley PetscInt f; 3072e6ccafaeSMatthew G Knepley 3073e6ccafaeSMatthew G Knepley numFaces = 0; 30749566063dSJacob Faibussowitsch PetscCall(DMGetWorkArray(subdm, 1, MPIU_INT, (void **)&faces)); 3075e6ccafaeSMatthew G Knepley for (f = firstFace; f < *newFacePoint; ++f) { 3076e6ccafaeSMatthew G Knepley PetscInt dof, off, d; 3077e6ccafaeSMatthew G Knepley 30789566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(submesh->coneSection, f, &dof)); 30799566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(submesh->coneSection, f, &off)); 3080e6ccafaeSMatthew G Knepley /* Yes, I know this is quadratic, but I expect the sizes to be <5 */ 3081e6ccafaeSMatthew G Knepley for (d = 0; d < dof; ++d) { 3082e6ccafaeSMatthew G Knepley const PetscInt p = submesh->cones[off + d]; 3083e6ccafaeSMatthew G Knepley PetscInt v; 3084e6ccafaeSMatthew G Knepley 3085e6ccafaeSMatthew G Knepley for (v = 0; v < numFaceVertices; ++v) { 3086e6ccafaeSMatthew G Knepley if (subfaceVertices[v] == p) break; 3087e6ccafaeSMatthew G Knepley } 3088e6ccafaeSMatthew G Knepley if (v == numFaceVertices) break; 3089e6ccafaeSMatthew G Knepley } 3090e6ccafaeSMatthew G Knepley if (d == dof) { 3091e6ccafaeSMatthew G Knepley numFaces = 1; 3092e6ccafaeSMatthew G Knepley ((PetscInt *)faces)[0] = f; 3093e6ccafaeSMatthew G Knepley } 3094e6ccafaeSMatthew G Knepley } 3095e6ccafaeSMatthew G Knepley } 3096e6ccafaeSMatthew G Knepley #endif 309763a3b9bcSJacob Faibussowitsch PetscCheck(numFaces <= 1, comm, PETSC_ERR_ARG_WRONG, "Vertex set had %" PetscInt_FMT " faces, not one", numFaces); 3098f7d195e4SLawrence Mitchell if (numFaces == 1) { 3099e6ccafaeSMatthew G Knepley /* Add the other cell neighbor for this face */ 31009566063dSJacob Faibussowitsch PetscCall(DMPlexSetCone(subdm, subcell, faces)); 3101e6ccafaeSMatthew G Knepley } else { 3102e6ccafaeSMatthew G Knepley PetscInt *indices, *origVertices, *orientedVertices, *orientedSubVertices, v, ov; 3103e6ccafaeSMatthew G Knepley PetscBool posOriented; 3104e6ccafaeSMatthew G Knepley 31059566063dSJacob Faibussowitsch PetscCall(DMGetWorkArray(subdm, 4 * numFaceVertices * sizeof(PetscInt), MPIU_INT, &orientedVertices)); 3106e6ccafaeSMatthew G Knepley origVertices = &orientedVertices[numFaceVertices]; 3107e6ccafaeSMatthew G Knepley indices = &orientedVertices[numFaceVertices * 2]; 3108e6ccafaeSMatthew G Knepley orientedSubVertices = &orientedVertices[numFaceVertices * 3]; 31099566063dSJacob Faibussowitsch PetscCall(DMPlexGetOrientedFace(dm, cell, numFaceVertices, faceVertices, numCorners, indices, origVertices, orientedVertices, &posOriented)); 3110e6ccafaeSMatthew G Knepley /* TODO: I know that routine should return a permutation, not the indices */ 3111e6ccafaeSMatthew G Knepley for (v = 0; v < numFaceVertices; ++v) { 3112e6ccafaeSMatthew G Knepley const PetscInt vertex = faceVertices[v], subvertex = subfaceVertices[v]; 3113e6ccafaeSMatthew G Knepley for (ov = 0; ov < numFaceVertices; ++ov) { 3114e6ccafaeSMatthew G Knepley if (orientedVertices[ov] == vertex) { 3115e6ccafaeSMatthew G Knepley orientedSubVertices[ov] = subvertex; 3116e6ccafaeSMatthew G Knepley break; 3117e6ccafaeSMatthew G Knepley } 3118e6ccafaeSMatthew G Knepley } 311963a3b9bcSJacob Faibussowitsch PetscCheck(ov != numFaceVertices, comm, PETSC_ERR_PLIB, "Could not find face vertex %" PetscInt_FMT " in orientated set", vertex); 3120e6ccafaeSMatthew G Knepley } 31219566063dSJacob Faibussowitsch PetscCall(DMPlexSetCone(subdm, *newFacePoint, orientedSubVertices)); 31229566063dSJacob Faibussowitsch PetscCall(DMPlexSetCone(subdm, subcell, newFacePoint)); 31239566063dSJacob Faibussowitsch PetscCall(DMRestoreWorkArray(subdm, 4 * numFaceVertices * sizeof(PetscInt), MPIU_INT, &orientedVertices)); 3124e6ccafaeSMatthew G Knepley ++(*newFacePoint); 3125e6ccafaeSMatthew G Knepley } 3126ef07cca7SMatthew G. Knepley #if 0 31279566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreJoin(subdm, numFaceVertices, subfaceVertices, &numFaces, &faces)); 3128ef07cca7SMatthew G. Knepley #else 31299566063dSJacob Faibussowitsch PetscCall(DMRestoreWorkArray(subdm, 1, MPIU_INT, (void **)&faces)); 3130ef07cca7SMatthew G. Knepley #endif 31313ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3132e6ccafaeSMatthew G Knepley } 3133e6ccafaeSMatthew G Knepley 3134d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexCreateSubmesh_Uninterpolated(DM dm, DMLabel vertexLabel, PetscInt value, DM subdm) 3135d71ae5a4SJacob Faibussowitsch { 313682f516ccSBarry Smith MPI_Comm comm; 313753156dfcSMatthew G. Knepley DMLabel subpointMap; 3138efa14ee0SMatthew G Knepley IS subvertexIS, subcellIS; 3139efa14ee0SMatthew G Knepley const PetscInt *subVertices, *subCells; 3140efa14ee0SMatthew G Knepley PetscInt numSubVertices, firstSubVertex, numSubCells; 3141fed694aaSMatthew G. Knepley PetscInt *subface, maxConeSize, numSubFaces = 0, firstSubFace, newFacePoint, nFV = 0; 3142efa14ee0SMatthew G Knepley PetscInt vStart, vEnd, c, f; 3143e6ccafaeSMatthew G Knepley 3144e6ccafaeSMatthew G Knepley PetscFunctionBegin; 31459566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)dm, &comm)); 3146efa14ee0SMatthew G Knepley /* Create subpointMap which marks the submesh */ 31479566063dSJacob Faibussowitsch PetscCall(DMLabelCreate(PETSC_COMM_SELF, "subpoint_map", &subpointMap)); 31489566063dSJacob Faibussowitsch PetscCall(DMPlexSetSubpointMap(subdm, subpointMap)); 31499566063dSJacob Faibussowitsch if (vertexLabel) PetscCall(DMPlexMarkSubmesh_Uninterpolated(dm, vertexLabel, value, subpointMap, &numSubFaces, &nFV, subdm)); 3150efa14ee0SMatthew G Knepley /* Setup chart */ 31519566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumSize(subpointMap, 0, &numSubVertices)); 31529566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumSize(subpointMap, 2, &numSubCells)); 31539566063dSJacob Faibussowitsch PetscCall(DMPlexSetChart(subdm, 0, numSubCells + numSubFaces + numSubVertices)); 31549566063dSJacob Faibussowitsch PetscCall(DMPlexSetVTKCellHeight(subdm, 1)); 3155e6ccafaeSMatthew G Knepley /* Set cone sizes */ 3156e6ccafaeSMatthew G Knepley firstSubVertex = numSubCells; 3157efa14ee0SMatthew G Knepley firstSubFace = numSubCells + numSubVertices; 3158e6ccafaeSMatthew G Knepley newFacePoint = firstSubFace; 31599566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(subpointMap, 0, &subvertexIS)); 31609566063dSJacob Faibussowitsch if (subvertexIS) PetscCall(ISGetIndices(subvertexIS, &subVertices)); 31619566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(subpointMap, 2, &subcellIS)); 31629566063dSJacob Faibussowitsch if (subcellIS) PetscCall(ISGetIndices(subcellIS, &subCells)); 316348a46eb9SPierre Jolivet for (c = 0; c < numSubCells; ++c) PetscCall(DMPlexSetConeSize(subdm, c, 1)); 316448a46eb9SPierre Jolivet for (f = firstSubFace; f < firstSubFace + numSubFaces; ++f) PetscCall(DMPlexSetConeSize(subdm, f, nFV)); 31659566063dSJacob Faibussowitsch PetscCall(DMSetUp(subdm)); 3166d24a712aSStefano Zampini PetscCall(DMLabelDestroy(&subpointMap)); 3167e6ccafaeSMatthew G Knepley /* Create face cones */ 31689566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthStratum(dm, 0, &vStart, &vEnd)); 31699566063dSJacob Faibussowitsch PetscCall(DMPlexGetMaxSizes(dm, &maxConeSize, NULL)); 31709566063dSJacob Faibussowitsch PetscCall(DMGetWorkArray(subdm, maxConeSize, MPIU_INT, (void **)&subface)); 3171e6ccafaeSMatthew G Knepley for (c = 0; c < numSubCells; ++c) { 3172e6ccafaeSMatthew G Knepley const PetscInt cell = subCells[c]; 3173efa14ee0SMatthew G Knepley const PetscInt subcell = c; 31740298fd71SBarry Smith PetscInt *closure = NULL; 3175efa14ee0SMatthew G Knepley PetscInt closureSize, cl, numCorners = 0, faceSize = 0; 3176e6ccafaeSMatthew G Knepley 31779566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(dm, cell, PETSC_TRUE, &closureSize, &closure)); 3178efa14ee0SMatthew G Knepley for (cl = 0; cl < closureSize * 2; cl += 2) { 3179efa14ee0SMatthew G Knepley const PetscInt point = closure[cl]; 3180e6ccafaeSMatthew G Knepley PetscInt subVertex; 3181e6ccafaeSMatthew G Knepley 3182efa14ee0SMatthew G Knepley if ((point >= vStart) && (point < vEnd)) { 3183efa14ee0SMatthew G Knepley ++numCorners; 31849566063dSJacob Faibussowitsch PetscCall(PetscFindInt(point, numSubVertices, subVertices, &subVertex)); 3185efa14ee0SMatthew G Knepley if (subVertex >= 0) { 3186efa14ee0SMatthew G Knepley closure[faceSize] = point; 318765560c7fSMatthew G Knepley subface[faceSize] = firstSubVertex + subVertex; 3188e6ccafaeSMatthew G Knepley ++faceSize; 3189e6ccafaeSMatthew G Knepley } 3190e6ccafaeSMatthew G Knepley } 3191e6ccafaeSMatthew G Knepley } 319263a3b9bcSJacob Faibussowitsch PetscCheck(faceSize <= nFV, comm, PETSC_ERR_ARG_WRONG, "Invalid submesh: Too many vertices %" PetscInt_FMT " of an element on the surface", faceSize); 319348a46eb9SPierre Jolivet if (faceSize == nFV) PetscCall(DMPlexInsertFace_Internal(dm, subdm, faceSize, closure, subface, numCorners, cell, subcell, firstSubFace, &newFacePoint)); 31949566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dm, cell, PETSC_TRUE, &closureSize, &closure)); 3195e6ccafaeSMatthew G Knepley } 31969566063dSJacob Faibussowitsch PetscCall(DMRestoreWorkArray(subdm, maxConeSize, MPIU_INT, (void **)&subface)); 31979566063dSJacob Faibussowitsch PetscCall(DMPlexSymmetrize(subdm)); 31989566063dSJacob Faibussowitsch PetscCall(DMPlexStratify(subdm)); 3199e6ccafaeSMatthew G Knepley /* Build coordinates */ 3200efa14ee0SMatthew G Knepley { 3201efa14ee0SMatthew G Knepley PetscSection coordSection, subCoordSection; 3202efa14ee0SMatthew G Knepley Vec coordinates, subCoordinates; 3203efa14ee0SMatthew G Knepley PetscScalar *coords, *subCoords; 3204285d324eSMatthew G. Knepley PetscInt numComp, coordSize, v; 320524640c55SToby Isaac const char *name; 3206efa14ee0SMatthew G Knepley 32079566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateSection(dm, &coordSection)); 32089566063dSJacob Faibussowitsch PetscCall(DMGetCoordinatesLocal(dm, &coordinates)); 32099566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateSection(subdm, &subCoordSection)); 32109566063dSJacob Faibussowitsch PetscCall(PetscSectionSetNumFields(subCoordSection, 1)); 32119566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldComponents(coordSection, 0, &numComp)); 32129566063dSJacob Faibussowitsch PetscCall(PetscSectionSetFieldComponents(subCoordSection, 0, numComp)); 32139566063dSJacob Faibussowitsch PetscCall(PetscSectionSetChart(subCoordSection, firstSubVertex, firstSubVertex + numSubVertices)); 3214efa14ee0SMatthew G Knepley for (v = 0; v < numSubVertices; ++v) { 3215efa14ee0SMatthew G Knepley const PetscInt vertex = subVertices[v]; 3216efa14ee0SMatthew G Knepley const PetscInt subvertex = firstSubVertex + v; 3217efa14ee0SMatthew G Knepley PetscInt dof; 3218efa14ee0SMatthew G Knepley 32199566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(coordSection, vertex, &dof)); 32209566063dSJacob Faibussowitsch PetscCall(PetscSectionSetDof(subCoordSection, subvertex, dof)); 32219566063dSJacob Faibussowitsch PetscCall(PetscSectionSetFieldDof(subCoordSection, subvertex, 0, dof)); 3222e6ccafaeSMatthew G Knepley } 32239566063dSJacob Faibussowitsch PetscCall(PetscSectionSetUp(subCoordSection)); 32249566063dSJacob Faibussowitsch PetscCall(PetscSectionGetStorageSize(subCoordSection, &coordSize)); 32259566063dSJacob Faibussowitsch PetscCall(VecCreate(PETSC_COMM_SELF, &subCoordinates)); 32269566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)coordinates, &name)); 32279566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)subCoordinates, name)); 32289566063dSJacob Faibussowitsch PetscCall(VecSetSizes(subCoordinates, coordSize, PETSC_DETERMINE)); 32299566063dSJacob Faibussowitsch PetscCall(VecSetType(subCoordinates, VECSTANDARD)); 3230830e53efSMatthew G. Knepley if (coordSize) { 32319566063dSJacob Faibussowitsch PetscCall(VecGetArray(coordinates, &coords)); 32329566063dSJacob Faibussowitsch PetscCall(VecGetArray(subCoordinates, &subCoords)); 3233efa14ee0SMatthew G Knepley for (v = 0; v < numSubVertices; ++v) { 3234efa14ee0SMatthew G Knepley const PetscInt vertex = subVertices[v]; 3235efa14ee0SMatthew G Knepley const PetscInt subvertex = firstSubVertex + v; 3236efa14ee0SMatthew G Knepley PetscInt dof, off, sdof, soff, d; 3237e6ccafaeSMatthew G Knepley 32389566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(coordSection, vertex, &dof)); 32399566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(coordSection, vertex, &off)); 32409566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(subCoordSection, subvertex, &sdof)); 32419566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(subCoordSection, subvertex, &soff)); 324263a3b9bcSJacob Faibussowitsch PetscCheck(dof == sdof, comm, PETSC_ERR_PLIB, "Coordinate dimension %" PetscInt_FMT " on subvertex %" PetscInt_FMT ", vertex %" PetscInt_FMT " should be %" PetscInt_FMT, sdof, subvertex, vertex, dof); 3243e6ccafaeSMatthew G Knepley for (d = 0; d < dof; ++d) subCoords[soff + d] = coords[off + d]; 3244e6ccafaeSMatthew G Knepley } 32459566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(coordinates, &coords)); 32469566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(subCoordinates, &subCoords)); 32473b399e24SMatthew G. Knepley } 32489566063dSJacob Faibussowitsch PetscCall(DMSetCoordinatesLocal(subdm, subCoordinates)); 32499566063dSJacob Faibussowitsch PetscCall(VecDestroy(&subCoordinates)); 3250e6ccafaeSMatthew G Knepley } 3251efa14ee0SMatthew G Knepley /* Cleanup */ 32529566063dSJacob Faibussowitsch if (subvertexIS) PetscCall(ISRestoreIndices(subvertexIS, &subVertices)); 32539566063dSJacob Faibussowitsch PetscCall(ISDestroy(&subvertexIS)); 32549566063dSJacob Faibussowitsch if (subcellIS) PetscCall(ISRestoreIndices(subcellIS, &subCells)); 32559566063dSJacob Faibussowitsch PetscCall(ISDestroy(&subcellIS)); 32563ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3257e6ccafaeSMatthew G Knepley } 3258e6ccafaeSMatthew G Knepley 3259d5b43468SJose E. Roman /* TODO: Fix this to properly propagate up error conditions it may find */ 3260d71ae5a4SJacob Faibussowitsch static inline PetscInt DMPlexFilterPoint_Internal(PetscInt point, PetscInt firstSubPoint, PetscInt numSubPoints, const PetscInt subPoints[]) 3261d71ae5a4SJacob Faibussowitsch { 32623982b651SMatthew G. Knepley PetscInt subPoint; 32633982b651SMatthew G. Knepley PetscErrorCode ierr; 32643982b651SMatthew G. Knepley 32659371c9d4SSatish Balay ierr = PetscFindInt(point, numSubPoints, subPoints, &subPoint); 32669371c9d4SSatish Balay if (ierr) return -1; 32673982b651SMatthew G. Knepley return subPoint < 0 ? subPoint : firstSubPoint + subPoint; 32683982b651SMatthew G. Knepley } 32693982b651SMatthew G. Knepley 3270d5b43468SJose E. Roman /* TODO: Fix this to properly propagate up error conditions it may find */ 3271d71ae5a4SJacob Faibussowitsch static inline PetscInt DMPlexFilterPointPerm_Internal(PetscInt point, PetscInt firstSubPoint, PetscInt numSubPoints, const PetscInt subPoints[], const PetscInt subIndices[]) 3272d71ae5a4SJacob Faibussowitsch { 3273dd05d810SMatthew G. Knepley PetscInt subPoint; 3274dd05d810SMatthew G. Knepley PetscErrorCode ierr; 3275dd05d810SMatthew G. Knepley 3276dd05d810SMatthew G. Knepley ierr = PetscFindInt(point, numSubPoints, subPoints, &subPoint); 3277dd05d810SMatthew G. Knepley if (ierr) return -1; 3278dd05d810SMatthew G. Knepley return subPoint < 0 ? subPoint : firstSubPoint + (subIndices ? subIndices[subPoint] : subPoint); 3279dd05d810SMatthew G. Knepley } 3280dd05d810SMatthew G. Knepley 3281d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexFilterLabels_Internal(DM dm, const PetscInt numSubPoints[], const PetscInt *subpoints[], const PetscInt firstSubPoint[], DM subdm) 3282d71ae5a4SJacob Faibussowitsch { 3283695799ffSMatthew G. Knepley DMLabel depthLabel; 3284212103e5SMatthew Knepley PetscInt Nl, l, d; 3285212103e5SMatthew Knepley 3286212103e5SMatthew Knepley PetscFunctionBegin; 3287695799ffSMatthew G. Knepley // Reset depth label for fast lookup 3288695799ffSMatthew G. Knepley PetscCall(DMPlexGetDepthLabel(dm, &depthLabel)); 3289695799ffSMatthew G. Knepley PetscCall(DMLabelMakeAllInvalid_Internal(depthLabel)); 32909566063dSJacob Faibussowitsch PetscCall(DMGetNumLabels(dm, &Nl)); 3291212103e5SMatthew Knepley for (l = 0; l < Nl; ++l) { 3292212103e5SMatthew Knepley DMLabel label, newlabel; 3293212103e5SMatthew Knepley const char *lname; 3294d56405f8SMatthew G. Knepley PetscBool isDepth, isDim, isCelltype, isVTK; 3295212103e5SMatthew Knepley IS valueIS; 3296212103e5SMatthew Knepley const PetscInt *values; 3297212103e5SMatthew Knepley PetscInt Nv, v; 3298212103e5SMatthew Knepley 32999566063dSJacob Faibussowitsch PetscCall(DMGetLabelName(dm, l, &lname)); 33009566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(lname, "depth", &isDepth)); 33019566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(lname, "dim", &isDim)); 33029566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(lname, "celltype", &isCelltype)); 33039566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(lname, "vtk", &isVTK)); 3304d56405f8SMatthew G. Knepley if (isDepth || isDim || isCelltype || isVTK) continue; 33059566063dSJacob Faibussowitsch PetscCall(DMCreateLabel(subdm, lname)); 33069566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, lname, &label)); 33079566063dSJacob Faibussowitsch PetscCall(DMGetLabel(subdm, lname, &newlabel)); 33089566063dSJacob Faibussowitsch PetscCall(DMLabelGetDefaultValue(label, &v)); 33099566063dSJacob Faibussowitsch PetscCall(DMLabelSetDefaultValue(newlabel, v)); 33109566063dSJacob Faibussowitsch PetscCall(DMLabelGetValueIS(label, &valueIS)); 33119566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(valueIS, &Nv)); 33129566063dSJacob Faibussowitsch PetscCall(ISGetIndices(valueIS, &values)); 3313212103e5SMatthew Knepley for (v = 0; v < Nv; ++v) { 3314212103e5SMatthew Knepley IS pointIS; 3315212103e5SMatthew Knepley const PetscInt *points; 3316212103e5SMatthew Knepley PetscInt Np, p; 3317212103e5SMatthew Knepley 33189566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(label, values[v], &pointIS)); 33199566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(pointIS, &Np)); 33209566063dSJacob Faibussowitsch PetscCall(ISGetIndices(pointIS, &points)); 3321212103e5SMatthew Knepley for (p = 0; p < Np; ++p) { 3322212103e5SMatthew Knepley const PetscInt point = points[p]; 3323212103e5SMatthew Knepley PetscInt subp; 3324212103e5SMatthew Knepley 33259566063dSJacob Faibussowitsch PetscCall(DMPlexGetPointDepth(dm, point, &d)); 3326212103e5SMatthew Knepley subp = DMPlexFilterPoint_Internal(point, firstSubPoint[d], numSubPoints[d], subpoints[d]); 33279566063dSJacob Faibussowitsch if (subp >= 0) PetscCall(DMLabelSetValue(newlabel, subp, values[v])); 3328212103e5SMatthew Knepley } 33299566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(pointIS, &points)); 33309566063dSJacob Faibussowitsch PetscCall(ISDestroy(&pointIS)); 3331212103e5SMatthew Knepley } 33329566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(valueIS, &values)); 33339566063dSJacob Faibussowitsch PetscCall(ISDestroy(&valueIS)); 3334212103e5SMatthew Knepley } 33353ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3336212103e5SMatthew Knepley } 3337212103e5SMatthew Knepley 3338d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexCreateSubmeshGeneric_Interpolated(DM dm, DMLabel label, PetscInt value, PetscBool markedFaces, PetscBool isCohesive, PetscInt cellHeight, DM subdm) 3339d71ae5a4SJacob Faibussowitsch { 334082f516ccSBarry Smith MPI_Comm comm; 334153156dfcSMatthew G. Knepley DMLabel subpointMap; 3342efa14ee0SMatthew G Knepley IS *subpointIS; 3343efa14ee0SMatthew G Knepley const PetscInt **subpoints; 33443982b651SMatthew G. Knepley PetscInt *numSubPoints, *firstSubPoint, *coneNew, *orntNew; 3345dd05d810SMatthew G. Knepley PetscInt totSubPoints = 0, maxConeSize, dim, sdim, cdim, p, d, v; 33460d366550SMatthew G. Knepley PetscMPIInt rank; 3347e6ccafaeSMatthew G Knepley 3348e6ccafaeSMatthew G Knepley PetscFunctionBegin; 33499566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)dm, &comm)); 33509566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 3351efa14ee0SMatthew G Knepley /* Create subpointMap which marks the submesh */ 33529566063dSJacob Faibussowitsch PetscCall(DMLabelCreate(PETSC_COMM_SELF, "subpoint_map", &subpointMap)); 33539566063dSJacob Faibussowitsch PetscCall(DMPlexSetSubpointMap(subdm, subpointMap)); 3354bec263e5SMatthew G. Knepley if (cellHeight) { 33559566063dSJacob Faibussowitsch if (isCohesive) PetscCall(DMPlexMarkCohesiveSubmesh_Interpolated(dm, label, value, subpointMap, subdm)); 33569566063dSJacob Faibussowitsch else PetscCall(DMPlexMarkSubmesh_Interpolated(dm, label, value, markedFaces, subpointMap, subdm)); 3357bec263e5SMatthew G. Knepley } else { 3358bec263e5SMatthew G. Knepley DMLabel depth; 3359bec263e5SMatthew G. Knepley IS pointIS; 3360bec263e5SMatthew G. Knepley const PetscInt *points; 3361b85c8bf9SMatthew G. Knepley PetscInt numPoints = 0; 3362bec263e5SMatthew G. Knepley 33639566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthLabel(dm, &depth)); 33649566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(label, value, &pointIS)); 3365b85c8bf9SMatthew G. Knepley if (pointIS) { 33669566063dSJacob Faibussowitsch PetscCall(ISGetIndices(pointIS, &points)); 33679566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(pointIS, &numPoints)); 3368b85c8bf9SMatthew G. Knepley } 3369bec263e5SMatthew G. Knepley for (p = 0; p < numPoints; ++p) { 3370bec263e5SMatthew G. Knepley PetscInt *closure = NULL; 3371bec263e5SMatthew G. Knepley PetscInt closureSize, c, pdim; 3372bec263e5SMatthew G. Knepley 33739566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(dm, points[p], PETSC_TRUE, &closureSize, &closure)); 3374bec263e5SMatthew G. Knepley for (c = 0; c < closureSize * 2; c += 2) { 33759566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(depth, closure[c], &pdim)); 33769566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(subpointMap, closure[c], pdim)); 3377bec263e5SMatthew G. Knepley } 33789566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dm, points[p], PETSC_TRUE, &closureSize, &closure)); 3379bec263e5SMatthew G. Knepley } 33809566063dSJacob Faibussowitsch if (pointIS) PetscCall(ISRestoreIndices(pointIS, &points)); 33819566063dSJacob Faibussowitsch PetscCall(ISDestroy(&pointIS)); 3382bec263e5SMatthew G. Knepley } 3383efa14ee0SMatthew G Knepley /* Setup chart */ 33849566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 3385dd05d810SMatthew G. Knepley PetscCall(DMGetCoordinateDim(dm, &cdim)); 33869566063dSJacob Faibussowitsch PetscCall(PetscMalloc4(dim + 1, &numSubPoints, dim + 1, &firstSubPoint, dim + 1, &subpointIS, dim + 1, &subpoints)); 3387e6ccafaeSMatthew G Knepley for (d = 0; d <= dim; ++d) { 33889566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumSize(subpointMap, d, &numSubPoints[d])); 3389e6ccafaeSMatthew G Knepley totSubPoints += numSubPoints[d]; 3390e6ccafaeSMatthew G Knepley } 3391dd05d810SMatthew G. Knepley // Determine submesh dimension 3392dd05d810SMatthew G. Knepley PetscCall(DMGetDimension(subdm, &sdim)); 3393dd05d810SMatthew G. Knepley if (sdim > 0) { 3394dd05d810SMatthew G. Knepley // Calling function knows what dimension to use, and we include neighboring cells as well 3395dd05d810SMatthew G. Knepley sdim = dim; 3396dd05d810SMatthew G. Knepley } else { 3397dd05d810SMatthew G. Knepley // We reset the subdimension based on what is being selected 3398dd05d810SMatthew G. Knepley PetscInt lsdim; 3399dd05d810SMatthew G. Knepley for (lsdim = dim; lsdim >= 0; --lsdim) 3400dd05d810SMatthew G. Knepley if (numSubPoints[lsdim]) break; 3401a5a714f4SStefano Zampini PetscCall(MPIU_Allreduce(&lsdim, &sdim, 1, MPIU_INT, MPI_MAX, comm)); 3402dd05d810SMatthew G. Knepley PetscCall(DMSetDimension(subdm, sdim)); 3403dd05d810SMatthew G. Knepley PetscCall(DMSetCoordinateDim(subdm, cdim)); 3404dd05d810SMatthew G. Knepley } 34059566063dSJacob Faibussowitsch PetscCall(DMPlexSetChart(subdm, 0, totSubPoints)); 34069566063dSJacob Faibussowitsch PetscCall(DMPlexSetVTKCellHeight(subdm, cellHeight)); 3407e6ccafaeSMatthew G Knepley /* Set cone sizes */ 3408dd05d810SMatthew G. Knepley firstSubPoint[sdim] = 0; 3409dd05d810SMatthew G. Knepley firstSubPoint[0] = firstSubPoint[sdim] + numSubPoints[sdim]; 3410dd05d810SMatthew G. Knepley if (sdim > 1) firstSubPoint[sdim - 1] = firstSubPoint[0] + numSubPoints[0]; 3411dd05d810SMatthew G. Knepley if (sdim > 2) firstSubPoint[sdim - 2] = firstSubPoint[sdim - 1] + numSubPoints[sdim - 1]; 3412dd05d810SMatthew G. Knepley for (d = 0; d <= sdim; ++d) { 34139566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(subpointMap, d, &subpointIS[d])); 34149566063dSJacob Faibussowitsch if (subpointIS[d]) PetscCall(ISGetIndices(subpointIS[d], &subpoints[d])); 3415e6ccafaeSMatthew G Knepley } 3416412e9a14SMatthew G. Knepley /* We do not want this label automatically computed, instead we compute it here */ 34179566063dSJacob Faibussowitsch PetscCall(DMCreateLabel(subdm, "celltype")); 3418dd05d810SMatthew G. Knepley for (d = 0; d <= sdim; ++d) { 3419e6ccafaeSMatthew G Knepley for (p = 0; p < numSubPoints[d]; ++p) { 3420e6ccafaeSMatthew G Knepley const PetscInt point = subpoints[d][p]; 3421e6ccafaeSMatthew G Knepley const PetscInt subpoint = firstSubPoint[d] + p; 3422e6ccafaeSMatthew G Knepley const PetscInt *cone; 342315100a53SVaclav Hapla PetscInt coneSize; 3424e6ccafaeSMatthew G Knepley 34259566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, point, &coneSize)); 3426dd05d810SMatthew G. Knepley if (cellHeight && (d == sdim)) { 342715100a53SVaclav Hapla PetscInt coneSizeNew, c, val; 342815100a53SVaclav Hapla 34299566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, point, &cone)); 3430e6ccafaeSMatthew G Knepley for (c = 0, coneSizeNew = 0; c < coneSize; ++c) { 34319566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(subpointMap, cone[c], &val)); 3432e6ccafaeSMatthew G Knepley if (val >= 0) coneSizeNew++; 3433e6ccafaeSMatthew G Knepley } 34349566063dSJacob Faibussowitsch PetscCall(DMPlexSetConeSize(subdm, subpoint, coneSizeNew)); 34359566063dSJacob Faibussowitsch PetscCall(DMPlexSetCellType(subdm, subpoint, DM_POLYTOPE_FV_GHOST)); 343615100a53SVaclav Hapla } else { 343715100a53SVaclav Hapla DMPolytopeType ct; 343815100a53SVaclav Hapla 343915100a53SVaclav Hapla PetscCall(DMPlexSetConeSize(subdm, subpoint, coneSize)); 344015100a53SVaclav Hapla PetscCall(DMPlexGetCellType(dm, point, &ct)); 344115100a53SVaclav Hapla PetscCall(DMPlexSetCellType(subdm, subpoint, ct)); 3442e6ccafaeSMatthew G Knepley } 3443e6ccafaeSMatthew G Knepley } 3444e6ccafaeSMatthew G Knepley } 34459566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&subpointMap)); 34469566063dSJacob Faibussowitsch PetscCall(DMSetUp(subdm)); 3447e6ccafaeSMatthew G Knepley /* Set cones */ 34489566063dSJacob Faibussowitsch PetscCall(DMPlexGetMaxSizes(dm, &maxConeSize, NULL)); 34499566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(maxConeSize, &coneNew, maxConeSize, &orntNew)); 3450dd05d810SMatthew G. Knepley for (d = 0; d <= sdim; ++d) { 3451e6ccafaeSMatthew G Knepley for (p = 0; p < numSubPoints[d]; ++p) { 3452e6ccafaeSMatthew G Knepley const PetscInt point = subpoints[d][p]; 3453e6ccafaeSMatthew G Knepley const PetscInt subpoint = firstSubPoint[d] + p; 34540e49e2e2SMatthew G. Knepley const PetscInt *cone, *ornt; 34550d366550SMatthew G. Knepley PetscInt coneSize, subconeSize, coneSizeNew, c, subc, fornt = 0; 3456e6ccafaeSMatthew G Knepley 3457dd05d810SMatthew G. Knepley if (d == sdim - 1) { 34580d366550SMatthew G. Knepley const PetscInt *support, *cone, *ornt; 34590d366550SMatthew G. Knepley PetscInt supportSize, coneSize, s, subc; 34600d366550SMatthew G. Knepley 34619566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(dm, point, &support)); 34629566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dm, point, &supportSize)); 34630d366550SMatthew G. Knepley for (s = 0; s < supportSize; ++s) { 3464064cae4fSPierre Jolivet PetscBool isHybrid = PETSC_FALSE; 3465412e9a14SMatthew G. Knepley 34669566063dSJacob Faibussowitsch PetscCall(DMPlexCellIsHybrid_Internal(dm, support[s], &isHybrid)); 3467412e9a14SMatthew G. Knepley if (!isHybrid) continue; 34689566063dSJacob Faibussowitsch PetscCall(PetscFindInt(support[s], numSubPoints[d + 1], subpoints[d + 1], &subc)); 34690d366550SMatthew G. Knepley if (subc >= 0) { 34700d366550SMatthew G. Knepley const PetscInt ccell = subpoints[d + 1][subc]; 34710d366550SMatthew G. Knepley 34729566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, ccell, &cone)); 34739566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, ccell, &coneSize)); 34749566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeOrientation(dm, ccell, &ornt)); 34750d366550SMatthew G. Knepley for (c = 0; c < coneSize; ++c) { 34760d366550SMatthew G. Knepley if (cone[c] == point) { 34770d366550SMatthew G. Knepley fornt = ornt[c]; 34780d366550SMatthew G. Knepley break; 34790d366550SMatthew G. Knepley } 34800d366550SMatthew G. Knepley } 34810d366550SMatthew G. Knepley break; 34820d366550SMatthew G. Knepley } 34830d366550SMatthew G. Knepley } 34840d366550SMatthew G. Knepley } 34859566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, point, &coneSize)); 34869566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(subdm, subpoint, &subconeSize)); 34879566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, point, &cone)); 34889566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeOrientation(dm, point, &ornt)); 3489e6ccafaeSMatthew G Knepley for (c = 0, coneSizeNew = 0; c < coneSize; ++c) { 34909566063dSJacob Faibussowitsch PetscCall(PetscFindInt(cone[c], numSubPoints[d - 1], subpoints[d - 1], &subc)); 349101a2673eSMatthew G. Knepley if (subc >= 0) { 349201a2673eSMatthew G. Knepley coneNew[coneSizeNew] = firstSubPoint[d - 1] + subc; 34933982b651SMatthew G. Knepley orntNew[coneSizeNew] = ornt[c]; 349401a2673eSMatthew G. Knepley ++coneSizeNew; 349501a2673eSMatthew G. Knepley } 3496e6ccafaeSMatthew G Knepley } 349763a3b9bcSJacob Faibussowitsch PetscCheck(coneSizeNew == subconeSize, comm, PETSC_ERR_PLIB, "Number of cone points located %" PetscInt_FMT " does not match subcone size %" PetscInt_FMT, coneSizeNew, subconeSize); 34989566063dSJacob Faibussowitsch PetscCall(DMPlexSetCone(subdm, subpoint, coneNew)); 34999566063dSJacob Faibussowitsch PetscCall(DMPlexSetConeOrientation(subdm, subpoint, orntNew)); 35009566063dSJacob Faibussowitsch if (fornt < 0) PetscCall(DMPlexOrientPoint(subdm, subpoint, fornt)); 3501e6ccafaeSMatthew G Knepley } 3502e6ccafaeSMatthew G Knepley } 35039566063dSJacob Faibussowitsch PetscCall(PetscFree2(coneNew, orntNew)); 35049566063dSJacob Faibussowitsch PetscCall(DMPlexSymmetrize(subdm)); 35059566063dSJacob Faibussowitsch PetscCall(DMPlexStratify(subdm)); 3506e6ccafaeSMatthew G Knepley /* Build coordinates */ 3507e6ccafaeSMatthew G Knepley { 3508e6ccafaeSMatthew G Knepley PetscSection coordSection, subCoordSection; 3509e6ccafaeSMatthew G Knepley Vec coordinates, subCoordinates; 3510e6ccafaeSMatthew G Knepley PetscScalar *coords, *subCoords; 3511c0e8cf5fSMatthew G. Knepley PetscInt cdim, numComp, coordSize; 351224640c55SToby Isaac const char *name; 3513e6ccafaeSMatthew G Knepley 35149566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDim(dm, &cdim)); 35159566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateSection(dm, &coordSection)); 35169566063dSJacob Faibussowitsch PetscCall(DMGetCoordinatesLocal(dm, &coordinates)); 35179566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateSection(subdm, &subCoordSection)); 35189566063dSJacob Faibussowitsch PetscCall(PetscSectionSetNumFields(subCoordSection, 1)); 35199566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldComponents(coordSection, 0, &numComp)); 35209566063dSJacob Faibussowitsch PetscCall(PetscSectionSetFieldComponents(subCoordSection, 0, numComp)); 35219566063dSJacob Faibussowitsch PetscCall(PetscSectionSetChart(subCoordSection, firstSubPoint[0], firstSubPoint[0] + numSubPoints[0])); 3522e6ccafaeSMatthew G Knepley for (v = 0; v < numSubPoints[0]; ++v) { 3523e6ccafaeSMatthew G Knepley const PetscInt vertex = subpoints[0][v]; 3524e6ccafaeSMatthew G Knepley const PetscInt subvertex = firstSubPoint[0] + v; 3525e6ccafaeSMatthew G Knepley PetscInt dof; 3526e6ccafaeSMatthew G Knepley 35279566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(coordSection, vertex, &dof)); 35289566063dSJacob Faibussowitsch PetscCall(PetscSectionSetDof(subCoordSection, subvertex, dof)); 35299566063dSJacob Faibussowitsch PetscCall(PetscSectionSetFieldDof(subCoordSection, subvertex, 0, dof)); 3530e6ccafaeSMatthew G Knepley } 35319566063dSJacob Faibussowitsch PetscCall(PetscSectionSetUp(subCoordSection)); 35329566063dSJacob Faibussowitsch PetscCall(PetscSectionGetStorageSize(subCoordSection, &coordSize)); 35339566063dSJacob Faibussowitsch PetscCall(VecCreate(PETSC_COMM_SELF, &subCoordinates)); 35349566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)coordinates, &name)); 35359566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)subCoordinates, name)); 35369566063dSJacob Faibussowitsch PetscCall(VecSetSizes(subCoordinates, coordSize, PETSC_DETERMINE)); 35379566063dSJacob Faibussowitsch PetscCall(VecSetBlockSize(subCoordinates, cdim)); 35389566063dSJacob Faibussowitsch PetscCall(VecSetType(subCoordinates, VECSTANDARD)); 35399566063dSJacob Faibussowitsch PetscCall(VecGetArray(coordinates, &coords)); 35409566063dSJacob Faibussowitsch PetscCall(VecGetArray(subCoordinates, &subCoords)); 3541e6ccafaeSMatthew G Knepley for (v = 0; v < numSubPoints[0]; ++v) { 3542e6ccafaeSMatthew G Knepley const PetscInt vertex = subpoints[0][v]; 3543e6ccafaeSMatthew G Knepley const PetscInt subvertex = firstSubPoint[0] + v; 3544e6ccafaeSMatthew G Knepley PetscInt dof, off, sdof, soff, d; 3545e6ccafaeSMatthew G Knepley 35469566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(coordSection, vertex, &dof)); 35479566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(coordSection, vertex, &off)); 35489566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(subCoordSection, subvertex, &sdof)); 35499566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(subCoordSection, subvertex, &soff)); 355063a3b9bcSJacob Faibussowitsch PetscCheck(dof == sdof, comm, PETSC_ERR_PLIB, "Coordinate dimension %" PetscInt_FMT " on subvertex %" PetscInt_FMT ", vertex %" PetscInt_FMT " should be %" PetscInt_FMT, sdof, subvertex, vertex, dof); 3551efa14ee0SMatthew G Knepley for (d = 0; d < dof; ++d) subCoords[soff + d] = coords[off + d]; 3552e6ccafaeSMatthew G Knepley } 35539566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(coordinates, &coords)); 35549566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(subCoordinates, &subCoords)); 35559566063dSJacob Faibussowitsch PetscCall(DMSetCoordinatesLocal(subdm, subCoordinates)); 35569566063dSJacob Faibussowitsch PetscCall(VecDestroy(&subCoordinates)); 3557e6ccafaeSMatthew G Knepley } 35583982b651SMatthew G. Knepley /* Build SF: We need this complexity because subpoints might not be selected on the owning process */ 35593982b651SMatthew G. Knepley { 35603982b651SMatthew G. Knepley PetscSF sfPoint, sfPointSub; 35613982b651SMatthew G. Knepley IS subpIS; 35623982b651SMatthew G. Knepley const PetscSFNode *remotePoints; 35635033f954SMatthew G. Knepley PetscSFNode *sremotePoints = NULL, *newLocalPoints = NULL, *newOwners = NULL; 35645033f954SMatthew G. Knepley const PetscInt *localPoints, *subpoints, *rootdegree; 3565dd05d810SMatthew G. Knepley PetscInt *slocalPoints = NULL, *sortedPoints = NULL, *sortedIndices = NULL; 35665033f954SMatthew G. Knepley PetscInt numRoots, numLeaves, numSubpoints = 0, numSubroots, numSubleaves = 0, l, sl = 0, ll = 0, pStart, pEnd, p; 35675033f954SMatthew G. Knepley PetscMPIInt rank, size; 35683982b651SMatthew G. Knepley 35699566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)dm), &rank)); 35705033f954SMatthew G. Knepley PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)dm), &size)); 35719566063dSJacob Faibussowitsch PetscCall(DMGetPointSF(dm, &sfPoint)); 35729566063dSJacob Faibussowitsch PetscCall(DMGetPointSF(subdm, &sfPointSub)); 35739566063dSJacob Faibussowitsch PetscCall(DMPlexGetChart(dm, &pStart, &pEnd)); 35749566063dSJacob Faibussowitsch PetscCall(DMPlexGetChart(subdm, NULL, &numSubroots)); 35759566063dSJacob Faibussowitsch PetscCall(DMPlexGetSubpointIS(subdm, &subpIS)); 35763982b651SMatthew G. Knepley if (subpIS) { 3577dd05d810SMatthew G. Knepley PetscBool sorted = PETSC_TRUE; 3578dd05d810SMatthew G. Knepley 35799566063dSJacob Faibussowitsch PetscCall(ISGetIndices(subpIS, &subpoints)); 35809566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(subpIS, &numSubpoints)); 3581dd05d810SMatthew G. Knepley for (p = 1; p < numSubpoints; ++p) sorted = sorted && (subpoints[p] >= subpoints[p - 1]) ? PETSC_TRUE : PETSC_FALSE; 3582dd05d810SMatthew G. Knepley if (!sorted) { 3583dd05d810SMatthew G. Knepley PetscCall(PetscMalloc2(numSubpoints, &sortedPoints, numSubpoints, &sortedIndices)); 3584dd05d810SMatthew G. Knepley for (p = 0; p < numSubpoints; ++p) sortedIndices[p] = p; 3585dd05d810SMatthew G. Knepley PetscCall(PetscArraycpy(sortedPoints, subpoints, numSubpoints)); 3586dd05d810SMatthew G. Knepley PetscCall(PetscSortIntWithArray(numSubpoints, sortedPoints, sortedIndices)); 3587dd05d810SMatthew G. Knepley } 35883982b651SMatthew G. Knepley } 35899566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(sfPoint, &numRoots, &numLeaves, &localPoints, &remotePoints)); 35903982b651SMatthew G. Knepley if (numRoots >= 0) { 35915033f954SMatthew G. Knepley PetscCall(PetscSFComputeDegreeBegin(sfPoint, &rootdegree)); 35925033f954SMatthew G. Knepley PetscCall(PetscSFComputeDegreeEnd(sfPoint, &rootdegree)); 35939566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(pEnd - pStart, &newLocalPoints, numRoots, &newOwners)); 35943982b651SMatthew G. Knepley for (p = 0; p < pEnd - pStart; ++p) { 35953982b651SMatthew G. Knepley newLocalPoints[p].rank = -2; 35963982b651SMatthew G. Knepley newLocalPoints[p].index = -2; 35973982b651SMatthew G. Knepley } 35983982b651SMatthew G. Knepley /* Set subleaves */ 35993982b651SMatthew G. Knepley for (l = 0; l < numLeaves; ++l) { 36003982b651SMatthew G. Knepley const PetscInt point = localPoints[l]; 3601dd05d810SMatthew G. Knepley const PetscInt subpoint = DMPlexFilterPointPerm_Internal(point, 0, numSubpoints, sortedPoints ? sortedPoints : subpoints, sortedIndices); 36023982b651SMatthew G. Knepley 36033982b651SMatthew G. Knepley if (subpoint < 0) continue; 36043982b651SMatthew G. Knepley newLocalPoints[point - pStart].rank = rank; 36053982b651SMatthew G. Knepley newLocalPoints[point - pStart].index = subpoint; 36063982b651SMatthew G. Knepley ++numSubleaves; 36073982b651SMatthew G. Knepley } 36083982b651SMatthew G. Knepley /* Must put in owned subpoints */ 36093982b651SMatthew G. Knepley for (p = pStart; p < pEnd; ++p) { 36103982b651SMatthew G. Knepley newOwners[p - pStart].rank = -3; 36113982b651SMatthew G. Knepley newOwners[p - pStart].index = -3; 36123982b651SMatthew G. Knepley } 3613d9384f27SMatthew G. Knepley for (p = 0; p < numSubpoints; ++p) { 36145033f954SMatthew G. Knepley /* Hold on to currently owned points */ 36155033f954SMatthew G. Knepley if (rootdegree[subpoints[p] - pStart]) newOwners[subpoints[p] - pStart].rank = rank + size; 36165033f954SMatthew G. Knepley else newOwners[subpoints[p] - pStart].rank = rank; 3617d9384f27SMatthew G. Knepley newOwners[subpoints[p] - pStart].index = p; 36183982b651SMatthew G. Knepley } 36199566063dSJacob Faibussowitsch PetscCall(PetscSFReduceBegin(sfPoint, MPIU_2INT, newLocalPoints, newOwners, MPI_MAXLOC)); 36209566063dSJacob Faibussowitsch PetscCall(PetscSFReduceEnd(sfPoint, MPIU_2INT, newLocalPoints, newOwners, MPI_MAXLOC)); 36219371c9d4SSatish Balay for (p = pStart; p < pEnd; ++p) 36229371c9d4SSatish Balay if (newOwners[p - pStart].rank >= size) newOwners[p - pStart].rank -= size; 36239566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(sfPoint, MPIU_2INT, newOwners, newLocalPoints, MPI_REPLACE)); 36249566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(sfPoint, MPIU_2INT, newOwners, newLocalPoints, MPI_REPLACE)); 36259566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(numSubleaves, &slocalPoints)); 36269566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(numSubleaves, &sremotePoints)); 36275033f954SMatthew G. Knepley for (l = 0; l < numLeaves; ++l) { 36283982b651SMatthew G. Knepley const PetscInt point = localPoints[l]; 3629dd05d810SMatthew G. Knepley const PetscInt subpoint = DMPlexFilterPointPerm_Internal(point, 0, numSubpoints, sortedPoints ? sortedPoints : subpoints, sortedIndices); 36303982b651SMatthew G. Knepley 36313982b651SMatthew G. Knepley if (subpoint < 0) continue; 36329371c9d4SSatish Balay if (newLocalPoints[point].rank == rank) { 36339371c9d4SSatish Balay ++ll; 36349371c9d4SSatish Balay continue; 36359371c9d4SSatish Balay } 36363982b651SMatthew G. Knepley slocalPoints[sl] = subpoint; 36373982b651SMatthew G. Knepley sremotePoints[sl].rank = newLocalPoints[point].rank; 36383982b651SMatthew G. Knepley sremotePoints[sl].index = newLocalPoints[point].index; 363963a3b9bcSJacob Faibussowitsch PetscCheck(sremotePoints[sl].rank >= 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid remote rank for local point %" PetscInt_FMT, point); 364063a3b9bcSJacob Faibussowitsch PetscCheck(sremotePoints[sl].index >= 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid remote subpoint for local point %" PetscInt_FMT, point); 36413982b651SMatthew G. Knepley ++sl; 36423982b651SMatthew G. Knepley } 36431dca8a05SBarry Smith PetscCheck(sl + ll == numSubleaves, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Mismatch in number of subleaves %" PetscInt_FMT " + %" PetscInt_FMT " != %" PetscInt_FMT, sl, ll, numSubleaves); 36449566063dSJacob Faibussowitsch PetscCall(PetscFree2(newLocalPoints, newOwners)); 36459566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(sfPointSub, numSubroots, sl, slocalPoints, PETSC_OWN_POINTER, sremotePoints, PETSC_OWN_POINTER)); 36463982b651SMatthew G. Knepley } 364748a46eb9SPierre Jolivet if (subpIS) PetscCall(ISRestoreIndices(subpIS, &subpoints)); 3648dd05d810SMatthew G. Knepley PetscCall(PetscFree2(sortedPoints, sortedIndices)); 36493982b651SMatthew G. Knepley } 3650212103e5SMatthew Knepley /* Filter labels */ 36519566063dSJacob Faibussowitsch PetscCall(DMPlexFilterLabels_Internal(dm, numSubPoints, subpoints, firstSubPoint, subdm)); 3652efa14ee0SMatthew G Knepley /* Cleanup */ 3653dd05d810SMatthew G. Knepley for (d = 0; d <= sdim; ++d) { 36549566063dSJacob Faibussowitsch if (subpointIS[d]) PetscCall(ISRestoreIndices(subpointIS[d], &subpoints[d])); 36559566063dSJacob Faibussowitsch PetscCall(ISDestroy(&subpointIS[d])); 3656e6ccafaeSMatthew G Knepley } 36579566063dSJacob Faibussowitsch PetscCall(PetscFree4(numSubPoints, firstSubPoint, subpointIS, subpoints)); 36583ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3659e6ccafaeSMatthew G Knepley } 3660e6ccafaeSMatthew G Knepley 3661d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexCreateSubmesh_Interpolated(DM dm, DMLabel vertexLabel, PetscInt value, PetscBool markedFaces, DM subdm) 3662d71ae5a4SJacob Faibussowitsch { 36633982b651SMatthew G. Knepley PetscFunctionBegin; 36649566063dSJacob Faibussowitsch PetscCall(DMPlexCreateSubmeshGeneric_Interpolated(dm, vertexLabel, value, markedFaces, PETSC_FALSE, 1, subdm)); 36653ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 36663982b651SMatthew G. Knepley } 36673982b651SMatthew G. Knepley 3668d0fa310fSMatthew G. Knepley /*@ 3669e6ccafaeSMatthew G Knepley DMPlexCreateSubmesh - Extract a hypersurface from the mesh using vertices defined by a label 3670e6ccafaeSMatthew G Knepley 3671e6ccafaeSMatthew G Knepley Input Parameters: 3672e6ccafaeSMatthew G Knepley + dm - The original mesh 367320f4b53cSBarry Smith . vertexLabel - The `DMLabel` marking points contained in the surface 3674158acfadSMatthew G. Knepley . value - The label value to use 367520f4b53cSBarry Smith - markedFaces - `PETSC_TRUE` if surface faces are marked in addition to vertices, `PETSC_FALSE` if only vertices are marked 3676e6ccafaeSMatthew G Knepley 3677e6ccafaeSMatthew G Knepley Output Parameter: 3678e6ccafaeSMatthew G Knepley . subdm - The surface mesh 3679e6ccafaeSMatthew G Knepley 3680e6ccafaeSMatthew G Knepley Level: developer 3681e6ccafaeSMatthew G Knepley 368220f4b53cSBarry Smith Note: 368320f4b53cSBarry Smith This function produces a `DMLabel` mapping original points in the submesh to their depth. This can be obtained using `DMPlexGetSubpointMap()`. 368420f4b53cSBarry Smith 36851cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexGetSubpointMap()`, `DMGetLabel()`, `DMLabelSetValue()` 3686830e53efSMatthew G. Knepley @*/ 3687d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexCreateSubmesh(DM dm, DMLabel vertexLabel, PetscInt value, PetscBool markedFaces, DM *subdm) 3688d71ae5a4SJacob Faibussowitsch { 3689827c4036SVaclav Hapla DMPlexInterpolatedFlag interpolated; 3690827c4036SVaclav Hapla PetscInt dim, cdim; 3691e6ccafaeSMatthew G Knepley 3692e6ccafaeSMatthew G Knepley PetscFunctionBegin; 3693e6ccafaeSMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 36944f572ea9SToby Isaac PetscAssertPointer(subdm, 5); 36959566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 36969566063dSJacob Faibussowitsch PetscCall(DMCreate(PetscObjectComm((PetscObject)dm), subdm)); 36979566063dSJacob Faibussowitsch PetscCall(DMSetType(*subdm, DMPLEX)); 36989566063dSJacob Faibussowitsch PetscCall(DMSetDimension(*subdm, dim - 1)); 36999566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDim(dm, &cdim)); 37009566063dSJacob Faibussowitsch PetscCall(DMSetCoordinateDim(*subdm, cdim)); 37019566063dSJacob Faibussowitsch PetscCall(DMPlexIsInterpolated(dm, &interpolated)); 370208401ef6SPierre Jolivet PetscCheck(interpolated != DMPLEX_INTERPOLATED_PARTIAL, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Not for partially interpolated meshes"); 3703827c4036SVaclav Hapla if (interpolated) { 37049566063dSJacob Faibussowitsch PetscCall(DMPlexCreateSubmesh_Interpolated(dm, vertexLabel, value, markedFaces, *subdm)); 3705e6ccafaeSMatthew G Knepley } else { 37069566063dSJacob Faibussowitsch PetscCall(DMPlexCreateSubmesh_Uninterpolated(dm, vertexLabel, value, *subdm)); 3707e6ccafaeSMatthew G Knepley } 37085de52c6dSVaclav Hapla PetscCall(DMPlexCopy_Internal(dm, PETSC_TRUE, PETSC_TRUE, *subdm)); 37093ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3710e6ccafaeSMatthew G Knepley } 3711e6ccafaeSMatthew G Knepley 3712d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexCreateCohesiveSubmesh_Uninterpolated(DM dm, PetscBool hasLagrange, const char label[], PetscInt value, DM subdm) 3713d71ae5a4SJacob Faibussowitsch { 3714766ab985SMatthew G. Knepley MPI_Comm comm; 3715766ab985SMatthew G. Knepley DMLabel subpointMap; 3716766ab985SMatthew G. Knepley IS subvertexIS; 3717766ab985SMatthew G. Knepley const PetscInt *subVertices; 3718fed694aaSMatthew G. Knepley PetscInt numSubVertices, firstSubVertex, numSubCells, *subCells = NULL; 3719766ab985SMatthew G. Knepley PetscInt *subface, maxConeSize, numSubFaces, firstSubFace, newFacePoint, nFV; 3720412e9a14SMatthew G. Knepley PetscInt c, f; 3721766ab985SMatthew G. Knepley 3722766ab985SMatthew G. Knepley PetscFunctionBegin; 37239566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)dm, &comm)); 3724766ab985SMatthew G. Knepley /* Create subpointMap which marks the submesh */ 37259566063dSJacob Faibussowitsch PetscCall(DMLabelCreate(PETSC_COMM_SELF, "subpoint_map", &subpointMap)); 37269566063dSJacob Faibussowitsch PetscCall(DMPlexSetSubpointMap(subdm, subpointMap)); 37279566063dSJacob Faibussowitsch PetscCall(DMPlexMarkCohesiveSubmesh_Uninterpolated(dm, hasLagrange, label, value, subpointMap, &numSubFaces, &nFV, &subCells, subdm)); 3728766ab985SMatthew G. Knepley /* Setup chart */ 37299566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumSize(subpointMap, 0, &numSubVertices)); 37309566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumSize(subpointMap, 2, &numSubCells)); 37319566063dSJacob Faibussowitsch PetscCall(DMPlexSetChart(subdm, 0, numSubCells + numSubFaces + numSubVertices)); 37329566063dSJacob Faibussowitsch PetscCall(DMPlexSetVTKCellHeight(subdm, 1)); 3733766ab985SMatthew G. Knepley /* Set cone sizes */ 3734766ab985SMatthew G. Knepley firstSubVertex = numSubCells; 3735766ab985SMatthew G. Knepley firstSubFace = numSubCells + numSubVertices; 3736766ab985SMatthew G. Knepley newFacePoint = firstSubFace; 37379566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(subpointMap, 0, &subvertexIS)); 37389566063dSJacob Faibussowitsch if (subvertexIS) PetscCall(ISGetIndices(subvertexIS, &subVertices)); 373948a46eb9SPierre Jolivet for (c = 0; c < numSubCells; ++c) PetscCall(DMPlexSetConeSize(subdm, c, 1)); 374048a46eb9SPierre Jolivet for (f = firstSubFace; f < firstSubFace + numSubFaces; ++f) PetscCall(DMPlexSetConeSize(subdm, f, nFV)); 37419566063dSJacob Faibussowitsch PetscCall(DMSetUp(subdm)); 3742d24a712aSStefano Zampini PetscCall(DMLabelDestroy(&subpointMap)); 3743766ab985SMatthew G. Knepley /* Create face cones */ 37449566063dSJacob Faibussowitsch PetscCall(DMPlexGetMaxSizes(dm, &maxConeSize, NULL)); 37459566063dSJacob Faibussowitsch PetscCall(DMGetWorkArray(subdm, maxConeSize, MPIU_INT, (void **)&subface)); 3746766ab985SMatthew G. Knepley for (c = 0; c < numSubCells; ++c) { 3747766ab985SMatthew G. Knepley const PetscInt cell = subCells[c]; 3748766ab985SMatthew G. Knepley const PetscInt subcell = c; 374987feddfdSMatthew G. Knepley const PetscInt *cone, *cells; 3750064cae4fSPierre Jolivet PetscBool isHybrid = PETSC_FALSE; 375187feddfdSMatthew G. Knepley PetscInt numCells, subVertex, p, v; 3752766ab985SMatthew G. Knepley 37539566063dSJacob Faibussowitsch PetscCall(DMPlexCellIsHybrid_Internal(dm, cell, &isHybrid)); 3754412e9a14SMatthew G. Knepley if (!isHybrid) continue; 37559566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, cell, &cone)); 375687feddfdSMatthew G. Knepley for (v = 0; v < nFV; ++v) { 37579566063dSJacob Faibussowitsch PetscCall(PetscFindInt(cone[v], numSubVertices, subVertices, &subVertex)); 375887feddfdSMatthew G. Knepley subface[v] = firstSubVertex + subVertex; 375987feddfdSMatthew G. Knepley } 37609566063dSJacob Faibussowitsch PetscCall(DMPlexSetCone(subdm, newFacePoint, subface)); 37619566063dSJacob Faibussowitsch PetscCall(DMPlexSetCone(subdm, subcell, &newFacePoint)); 37629566063dSJacob Faibussowitsch PetscCall(DMPlexGetJoin(dm, nFV, cone, &numCells, &cells)); 376327234c99SMatthew G. Knepley /* Not true in parallel 376408401ef6SPierre Jolivet PetscCheck(numCells == 2,PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Cohesive cells should separate two cells"); */ 376587feddfdSMatthew G. Knepley for (p = 0; p < numCells; ++p) { 376687feddfdSMatthew G. Knepley PetscInt negsubcell; 3767064cae4fSPierre Jolivet PetscBool isHybrid = PETSC_FALSE; 3768766ab985SMatthew G. Knepley 37699566063dSJacob Faibussowitsch PetscCall(DMPlexCellIsHybrid_Internal(dm, cells[p], &isHybrid)); 3770412e9a14SMatthew G. Knepley if (isHybrid) continue; 377187feddfdSMatthew G. Knepley /* I know this is a crap search */ 377287feddfdSMatthew G. Knepley for (negsubcell = 0; negsubcell < numSubCells; ++negsubcell) { 377387feddfdSMatthew G. Knepley if (subCells[negsubcell] == cells[p]) break; 3774766ab985SMatthew G. Knepley } 377563a3b9bcSJacob Faibussowitsch PetscCheck(negsubcell != numSubCells, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Could not find negative face neighbor for cohesive cell %" PetscInt_FMT, cell); 37769566063dSJacob Faibussowitsch PetscCall(DMPlexSetCone(subdm, negsubcell, &newFacePoint)); 3777766ab985SMatthew G. Knepley } 37789566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreJoin(dm, nFV, cone, &numCells, &cells)); 377987feddfdSMatthew G. Knepley ++newFacePoint; 3780766ab985SMatthew G. Knepley } 37819566063dSJacob Faibussowitsch PetscCall(DMRestoreWorkArray(subdm, maxConeSize, MPIU_INT, (void **)&subface)); 37829566063dSJacob Faibussowitsch PetscCall(DMPlexSymmetrize(subdm)); 37839566063dSJacob Faibussowitsch PetscCall(DMPlexStratify(subdm)); 3784766ab985SMatthew G. Knepley /* Build coordinates */ 3785766ab985SMatthew G. Knepley { 3786766ab985SMatthew G. Knepley PetscSection coordSection, subCoordSection; 3787766ab985SMatthew G. Knepley Vec coordinates, subCoordinates; 3788766ab985SMatthew G. Knepley PetscScalar *coords, *subCoords; 3789c0e8cf5fSMatthew G. Knepley PetscInt cdim, numComp, coordSize, v; 379024640c55SToby Isaac const char *name; 3791766ab985SMatthew G. Knepley 37929566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDim(dm, &cdim)); 37939566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateSection(dm, &coordSection)); 37949566063dSJacob Faibussowitsch PetscCall(DMGetCoordinatesLocal(dm, &coordinates)); 37959566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateSection(subdm, &subCoordSection)); 37969566063dSJacob Faibussowitsch PetscCall(PetscSectionSetNumFields(subCoordSection, 1)); 37979566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldComponents(coordSection, 0, &numComp)); 37989566063dSJacob Faibussowitsch PetscCall(PetscSectionSetFieldComponents(subCoordSection, 0, numComp)); 37999566063dSJacob Faibussowitsch PetscCall(PetscSectionSetChart(subCoordSection, firstSubVertex, firstSubVertex + numSubVertices)); 3800766ab985SMatthew G. Knepley for (v = 0; v < numSubVertices; ++v) { 3801766ab985SMatthew G. Knepley const PetscInt vertex = subVertices[v]; 3802766ab985SMatthew G. Knepley const PetscInt subvertex = firstSubVertex + v; 3803766ab985SMatthew G. Knepley PetscInt dof; 3804766ab985SMatthew G. Knepley 38059566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(coordSection, vertex, &dof)); 38069566063dSJacob Faibussowitsch PetscCall(PetscSectionSetDof(subCoordSection, subvertex, dof)); 38079566063dSJacob Faibussowitsch PetscCall(PetscSectionSetFieldDof(subCoordSection, subvertex, 0, dof)); 3808766ab985SMatthew G. Knepley } 38099566063dSJacob Faibussowitsch PetscCall(PetscSectionSetUp(subCoordSection)); 38109566063dSJacob Faibussowitsch PetscCall(PetscSectionGetStorageSize(subCoordSection, &coordSize)); 38119566063dSJacob Faibussowitsch PetscCall(VecCreate(PETSC_COMM_SELF, &subCoordinates)); 38129566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)coordinates, &name)); 38139566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)subCoordinates, name)); 38149566063dSJacob Faibussowitsch PetscCall(VecSetSizes(subCoordinates, coordSize, PETSC_DETERMINE)); 38159566063dSJacob Faibussowitsch PetscCall(VecSetBlockSize(subCoordinates, cdim)); 38169566063dSJacob Faibussowitsch PetscCall(VecSetType(subCoordinates, VECSTANDARD)); 38179566063dSJacob Faibussowitsch PetscCall(VecGetArray(coordinates, &coords)); 38189566063dSJacob Faibussowitsch PetscCall(VecGetArray(subCoordinates, &subCoords)); 3819766ab985SMatthew G. Knepley for (v = 0; v < numSubVertices; ++v) { 3820766ab985SMatthew G. Knepley const PetscInt vertex = subVertices[v]; 3821766ab985SMatthew G. Knepley const PetscInt subvertex = firstSubVertex + v; 3822766ab985SMatthew G. Knepley PetscInt dof, off, sdof, soff, d; 3823766ab985SMatthew G. Knepley 38249566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(coordSection, vertex, &dof)); 38259566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(coordSection, vertex, &off)); 38269566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(subCoordSection, subvertex, &sdof)); 38279566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(subCoordSection, subvertex, &soff)); 382863a3b9bcSJacob Faibussowitsch PetscCheck(dof == sdof, comm, PETSC_ERR_PLIB, "Coordinate dimension %" PetscInt_FMT " on subvertex %" PetscInt_FMT ", vertex %" PetscInt_FMT " should be %" PetscInt_FMT, sdof, subvertex, vertex, dof); 3829766ab985SMatthew G. Knepley for (d = 0; d < dof; ++d) subCoords[soff + d] = coords[off + d]; 3830766ab985SMatthew G. Knepley } 38319566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(coordinates, &coords)); 38329566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(subCoordinates, &subCoords)); 38339566063dSJacob Faibussowitsch PetscCall(DMSetCoordinatesLocal(subdm, subCoordinates)); 38349566063dSJacob Faibussowitsch PetscCall(VecDestroy(&subCoordinates)); 3835766ab985SMatthew G. Knepley } 3836aca35d17SMatthew G. Knepley /* Build SF */ 3837aca35d17SMatthew G. Knepley CHKMEMQ; 3838aca35d17SMatthew G. Knepley { 3839aca35d17SMatthew G. Knepley PetscSF sfPoint, sfPointSub; 3840aca35d17SMatthew G. Knepley const PetscSFNode *remotePoints; 3841bdcf2095SMatthew G. Knepley PetscSFNode *sremotePoints, *newLocalPoints, *newOwners; 3842aca35d17SMatthew G. Knepley const PetscInt *localPoints; 3843bdcf2095SMatthew G. Knepley PetscInt *slocalPoints; 384449c26ae4SMatthew G. Knepley PetscInt numRoots, numLeaves, numSubRoots = numSubCells + numSubFaces + numSubVertices, numSubLeaves = 0, l, sl, ll, pStart, pEnd, p, vStart, vEnd; 3845bdcf2095SMatthew G. Knepley PetscMPIInt rank; 3846aca35d17SMatthew G. Knepley 38479566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)dm), &rank)); 38489566063dSJacob Faibussowitsch PetscCall(DMGetPointSF(dm, &sfPoint)); 38499566063dSJacob Faibussowitsch PetscCall(DMGetPointSF(subdm, &sfPointSub)); 38509566063dSJacob Faibussowitsch PetscCall(DMPlexGetChart(dm, &pStart, &pEnd)); 38519566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthStratum(dm, 0, &vStart, &vEnd)); 38529566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(sfPoint, &numRoots, &numLeaves, &localPoints, &remotePoints)); 3853aca35d17SMatthew G. Knepley if (numRoots >= 0) { 3854aca35d17SMatthew G. Knepley /* Only vertices should be shared */ 38559566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(pEnd - pStart, &newLocalPoints, numRoots, &newOwners)); 3856bdcf2095SMatthew G. Knepley for (p = 0; p < pEnd - pStart; ++p) { 3857bdcf2095SMatthew G. Knepley newLocalPoints[p].rank = -2; 3858bdcf2095SMatthew G. Knepley newLocalPoints[p].index = -2; 3859bdcf2095SMatthew G. Knepley } 38609e0823b2SMatthew G. Knepley /* Set subleaves */ 3861aca35d17SMatthew G. Knepley for (l = 0; l < numLeaves; ++l) { 3862aca35d17SMatthew G. Knepley const PetscInt point = localPoints[l]; 3863bdcf2095SMatthew G. Knepley const PetscInt subPoint = DMPlexFilterPoint_Internal(point, firstSubVertex, numSubVertices, subVertices); 3864aca35d17SMatthew G. Knepley 386563a3b9bcSJacob Faibussowitsch PetscCheck(!(point < vStart) || !(point >= vEnd), PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Should not be mapping anything but vertices, %" PetscInt_FMT, point); 3866bdcf2095SMatthew G. Knepley if (subPoint < 0) continue; 3867bdcf2095SMatthew G. Knepley newLocalPoints[point - pStart].rank = rank; 3868bdcf2095SMatthew G. Knepley newLocalPoints[point - pStart].index = subPoint; 3869bdcf2095SMatthew G. Knepley ++numSubLeaves; 3870aca35d17SMatthew G. Knepley } 38719e0823b2SMatthew G. Knepley /* Must put in owned subpoints */ 38729e0823b2SMatthew G. Knepley for (p = pStart; p < pEnd; ++p) { 38739e0823b2SMatthew G. Knepley const PetscInt subPoint = DMPlexFilterPoint_Internal(p, firstSubVertex, numSubVertices, subVertices); 38749e0823b2SMatthew G. Knepley 38759e0823b2SMatthew G. Knepley if (subPoint < 0) { 38769e0823b2SMatthew G. Knepley newOwners[p - pStart].rank = -3; 38779e0823b2SMatthew G. Knepley newOwners[p - pStart].index = -3; 38789e0823b2SMatthew G. Knepley } else { 38799e0823b2SMatthew G. Knepley newOwners[p - pStart].rank = rank; 38809e0823b2SMatthew G. Knepley newOwners[p - pStart].index = subPoint; 38819e0823b2SMatthew G. Knepley } 3882bdcf2095SMatthew G. Knepley } 38839566063dSJacob Faibussowitsch PetscCall(PetscSFReduceBegin(sfPoint, MPIU_2INT, newLocalPoints, newOwners, MPI_MAXLOC)); 38849566063dSJacob Faibussowitsch PetscCall(PetscSFReduceEnd(sfPoint, MPIU_2INT, newLocalPoints, newOwners, MPI_MAXLOC)); 38859566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(sfPoint, MPIU_2INT, newOwners, newLocalPoints, MPI_REPLACE)); 38869566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(sfPoint, MPIU_2INT, newOwners, newLocalPoints, MPI_REPLACE)); 38879566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(numSubLeaves, &slocalPoints)); 38889566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(numSubLeaves, &sremotePoints)); 388949c26ae4SMatthew G. Knepley for (l = 0, sl = 0, ll = 0; l < numLeaves; ++l) { 3890bdcf2095SMatthew G. Knepley const PetscInt point = localPoints[l]; 3891bdcf2095SMatthew G. Knepley const PetscInt subPoint = DMPlexFilterPoint_Internal(point, firstSubVertex, numSubVertices, subVertices); 3892aca35d17SMatthew G. Knepley 3893aca35d17SMatthew G. Knepley if (subPoint < 0) continue; 38949371c9d4SSatish Balay if (newLocalPoints[point].rank == rank) { 38959371c9d4SSatish Balay ++ll; 38969371c9d4SSatish Balay continue; 38979371c9d4SSatish Balay } 3898aca35d17SMatthew G. Knepley slocalPoints[sl] = subPoint; 3899bdcf2095SMatthew G. Knepley sremotePoints[sl].rank = newLocalPoints[point].rank; 3900bdcf2095SMatthew G. Knepley sremotePoints[sl].index = newLocalPoints[point].index; 390163a3b9bcSJacob Faibussowitsch PetscCheck(sremotePoints[sl].rank >= 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid remote rank for local point %" PetscInt_FMT, point); 390263a3b9bcSJacob Faibussowitsch PetscCheck(sremotePoints[sl].index >= 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid remote subpoint for local point %" PetscInt_FMT, point); 3903aca35d17SMatthew G. Knepley ++sl; 3904aca35d17SMatthew G. Knepley } 39059566063dSJacob Faibussowitsch PetscCall(PetscFree2(newLocalPoints, newOwners)); 39061dca8a05SBarry Smith PetscCheck(sl + ll == numSubLeaves, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Mismatch in number of subleaves %" PetscInt_FMT " + %" PetscInt_FMT " != %" PetscInt_FMT, sl, ll, numSubLeaves); 39079566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(sfPointSub, numSubRoots, sl, slocalPoints, PETSC_OWN_POINTER, sremotePoints, PETSC_OWN_POINTER)); 3908aca35d17SMatthew G. Knepley } 3909aca35d17SMatthew G. Knepley } 3910aca35d17SMatthew G. Knepley CHKMEMQ; 3911766ab985SMatthew G. Knepley /* Cleanup */ 39129566063dSJacob Faibussowitsch if (subvertexIS) PetscCall(ISRestoreIndices(subvertexIS, &subVertices)); 39139566063dSJacob Faibussowitsch PetscCall(ISDestroy(&subvertexIS)); 39149566063dSJacob Faibussowitsch PetscCall(PetscFree(subCells)); 39153ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3916766ab985SMatthew G. Knepley } 3917766ab985SMatthew G. Knepley 3918d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexCreateCohesiveSubmesh_Interpolated(DM dm, const char labelname[], PetscInt value, DM subdm) 3919d71ae5a4SJacob Faibussowitsch { 39203982b651SMatthew G. Knepley DMLabel label = NULL; 3921766ab985SMatthew G. Knepley 3922766ab985SMatthew G. Knepley PetscFunctionBegin; 39239566063dSJacob Faibussowitsch if (labelname) PetscCall(DMGetLabel(dm, labelname, &label)); 39249566063dSJacob Faibussowitsch PetscCall(DMPlexCreateSubmeshGeneric_Interpolated(dm, label, value, PETSC_FALSE, PETSC_TRUE, 1, subdm)); 39253ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3926766ab985SMatthew G. Knepley } 3927766ab985SMatthew G. Knepley 3928c08575a3SMatthew G. Knepley /*@C 392920f4b53cSBarry Smith DMPlexCreateCohesiveSubmesh - Extract from a mesh with cohesive cells the hypersurface defined by one face of the cells. Optionally, a label can be given to restrict the cells. 3930766ab985SMatthew G. Knepley 3931766ab985SMatthew G. Knepley Input Parameters: 3932766ab985SMatthew G. Knepley + dm - The original mesh 393327c04023SMatthew G. Knepley . hasLagrange - The mesh has Lagrange unknowns in the cohesive cells 393420f4b53cSBarry Smith . label - A label name, or `NULL` 393527c04023SMatthew G. Knepley - value - A label value 3936766ab985SMatthew G. Knepley 3937766ab985SMatthew G. Knepley Output Parameter: 3938766ab985SMatthew G. Knepley . subdm - The surface mesh 3939766ab985SMatthew G. Knepley 3940766ab985SMatthew G. Knepley Level: developer 3941766ab985SMatthew G. Knepley 394220f4b53cSBarry Smith Note: 394320f4b53cSBarry Smith This function produces a `DMLabel` mapping original points in the submesh to their depth. This can be obtained using `DMPlexGetSubpointMap()`. 394420f4b53cSBarry Smith 39451cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexGetSubpointMap()`, `DMPlexCreateSubmesh()` 3946c08575a3SMatthew G. Knepley @*/ 3947d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexCreateCohesiveSubmesh(DM dm, PetscBool hasLagrange, const char label[], PetscInt value, DM *subdm) 3948d71ae5a4SJacob Faibussowitsch { 3949c0e8cf5fSMatthew G. Knepley PetscInt dim, cdim, depth; 3950766ab985SMatthew G. Knepley 3951766ab985SMatthew G. Knepley PetscFunctionBegin; 3952766ab985SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 39534f572ea9SToby Isaac PetscAssertPointer(subdm, 5); 39549566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 39559566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepth(dm, &depth)); 39569566063dSJacob Faibussowitsch PetscCall(DMCreate(PetscObjectComm((PetscObject)dm), subdm)); 39579566063dSJacob Faibussowitsch PetscCall(DMSetType(*subdm, DMPLEX)); 39589566063dSJacob Faibussowitsch PetscCall(DMSetDimension(*subdm, dim - 1)); 39599566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDim(dm, &cdim)); 39609566063dSJacob Faibussowitsch PetscCall(DMSetCoordinateDim(*subdm, cdim)); 3961766ab985SMatthew G. Knepley if (depth == dim) { 39629566063dSJacob Faibussowitsch PetscCall(DMPlexCreateCohesiveSubmesh_Interpolated(dm, label, value, *subdm)); 3963766ab985SMatthew G. Knepley } else { 39649566063dSJacob Faibussowitsch PetscCall(DMPlexCreateCohesiveSubmesh_Uninterpolated(dm, hasLagrange, label, value, *subdm)); 3965e6ccafaeSMatthew G Knepley } 39665de52c6dSVaclav Hapla PetscCall(DMPlexCopy_Internal(dm, PETSC_TRUE, PETSC_TRUE, *subdm)); 39673ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3968e6ccafaeSMatthew G Knepley } 3969e6ccafaeSMatthew G Knepley 3970bec263e5SMatthew G. Knepley /*@ 39710e18dc48SMatthew G. Knepley DMPlexReorderCohesiveSupports - Ensure that face supports for cohesive end caps are ordered 39720e18dc48SMatthew G. Knepley 39730e18dc48SMatthew G. Knepley Not Collective 39740e18dc48SMatthew G. Knepley 39750e18dc48SMatthew G. Knepley Input Parameter: 39760e18dc48SMatthew G. Knepley . dm - The `DM` containing cohesive cells 39770e18dc48SMatthew G. Knepley 39780e18dc48SMatthew G. Knepley Level: developer 39790e18dc48SMatthew G. Knepley 3980a4e35b19SJacob Faibussowitsch Note: 3981a4e35b19SJacob Faibussowitsch For the negative size (first) face, the cohesive cell should be first in the support, and for 3982a4e35b19SJacob Faibussowitsch the positive side (second) face, the cohesive cell should be second in the support. 39830e18dc48SMatthew G. Knepley 39840e18dc48SMatthew G. Knepley .seealso: `DMPlexConstructCohesiveCells()`, `DMPlexCreateCohesiveSubmesh()` 39850e18dc48SMatthew G. Knepley @*/ 39860e18dc48SMatthew G. Knepley PetscErrorCode DMPlexReorderCohesiveSupports(DM dm) 39870e18dc48SMatthew G. Knepley { 39880e18dc48SMatthew G. Knepley PetscInt dim, cStart, cEnd; 39890e18dc48SMatthew G. Knepley 39900e18dc48SMatthew G. Knepley PetscFunctionBegin; 39910e18dc48SMatthew G. Knepley PetscCall(DMGetDimension(dm, &dim)); 39920e18dc48SMatthew G. Knepley PetscCall(DMPlexGetTensorPrismBounds_Internal(dm, dim, &cStart, &cEnd)); 39930e18dc48SMatthew G. Knepley for (PetscInt c = cStart; c < cEnd; ++c) { 39940e18dc48SMatthew G. Knepley const PetscInt *cone; 39950e18dc48SMatthew G. Knepley PetscInt coneSize; 39960e18dc48SMatthew G. Knepley 39970e18dc48SMatthew G. Knepley PetscCall(DMPlexGetConeSize(dm, c, &coneSize)); 39980e18dc48SMatthew G. Knepley PetscCall(DMPlexGetCone(dm, c, &cone)); 39990e18dc48SMatthew G. Knepley PetscCheck(coneSize >= 2, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Hybrid cell %" PetscInt_FMT " cone size %" PetscInt_FMT " must be >= 2", c, coneSize); 40000e18dc48SMatthew G. Knepley for (PetscInt s = 0; s < 2; ++s) { 40010e18dc48SMatthew G. Knepley const PetscInt *supp; 40020e18dc48SMatthew G. Knepley PetscInt suppSize, newsupp[2]; 40030e18dc48SMatthew G. Knepley 40040e18dc48SMatthew G. Knepley PetscCall(DMPlexGetSupportSize(dm, cone[s], &suppSize)); 40050e18dc48SMatthew G. Knepley PetscCall(DMPlexGetSupport(dm, cone[s], &supp)); 40060e18dc48SMatthew G. Knepley if (suppSize == 2) { 40070e18dc48SMatthew G. Knepley /* Reorder hybrid end cap support */ 40080e18dc48SMatthew G. Knepley if (supp[s] == c) { 40090e18dc48SMatthew G. Knepley newsupp[0] = supp[1]; 40100e18dc48SMatthew G. Knepley newsupp[1] = supp[0]; 40110e18dc48SMatthew G. Knepley } else { 40120e18dc48SMatthew G. Knepley newsupp[0] = supp[0]; 40130e18dc48SMatthew G. Knepley newsupp[1] = supp[1]; 40140e18dc48SMatthew G. Knepley } 40150e18dc48SMatthew G. Knepley PetscCheck(newsupp[1 - s] == c, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Hybrid end cap %" PetscInt_FMT " support entry %" PetscInt_FMT " != %" PetscInt_FMT " hybrid cell", cone[s], newsupp[1 - s], c); 40160e18dc48SMatthew G. Knepley PetscCall(DMPlexSetSupport(dm, cone[s], newsupp)); 40170e18dc48SMatthew G. Knepley } 40180e18dc48SMatthew G. Knepley } 40190e18dc48SMatthew G. Knepley } 40200e18dc48SMatthew G. Knepley PetscFunctionReturn(PETSC_SUCCESS); 40210e18dc48SMatthew G. Knepley } 40220e18dc48SMatthew G. Knepley 40230e18dc48SMatthew G. Knepley /*@ 4024bec263e5SMatthew G. Knepley DMPlexFilter - Extract a subset of mesh cells defined by a label as a separate mesh 4025bec263e5SMatthew G. Knepley 4026bec263e5SMatthew G. Knepley Input Parameters: 4027bec263e5SMatthew G. Knepley + dm - The original mesh 402820f4b53cSBarry Smith . cellLabel - The `DMLabel` marking cells contained in the new mesh 4029bec263e5SMatthew G. Knepley - value - The label value to use 4030bec263e5SMatthew G. Knepley 4031bec263e5SMatthew G. Knepley Output Parameter: 4032bec263e5SMatthew G. Knepley . subdm - The new mesh 4033bec263e5SMatthew G. Knepley 4034bec263e5SMatthew G. Knepley Level: developer 4035bec263e5SMatthew G. Knepley 403620f4b53cSBarry Smith Note: 403720f4b53cSBarry Smith This function produces a `DMLabel` mapping original points in the submesh to their depth. This can be obtained using `DMPlexGetSubpointMap()`. 403820f4b53cSBarry Smith 40391cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexGetSubpointMap()`, `DMGetLabel()`, `DMLabelSetValue()`, `DMPlexCreateSubmesh()` 4040bec263e5SMatthew G. Knepley @*/ 4041d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexFilter(DM dm, DMLabel cellLabel, PetscInt value, DM *subdm) 4042d71ae5a4SJacob Faibussowitsch { 4043b47cd10cSMatthew G. Knepley PetscInt dim, overlap; 4044bec263e5SMatthew G. Knepley 4045bec263e5SMatthew G. Knepley PetscFunctionBegin; 4046bec263e5SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 40474f572ea9SToby Isaac PetscAssertPointer(subdm, 4); 40489566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 40499566063dSJacob Faibussowitsch PetscCall(DMCreate(PetscObjectComm((PetscObject)dm), subdm)); 40509566063dSJacob Faibussowitsch PetscCall(DMSetType(*subdm, DMPLEX)); 4051bec263e5SMatthew G. Knepley /* Extract submesh in place, could be empty on some procs, could have inconsistency if procs do not both extract a shared cell */ 40529566063dSJacob Faibussowitsch PetscCall(DMPlexCreateSubmeshGeneric_Interpolated(dm, cellLabel, value, PETSC_FALSE, PETSC_FALSE, 0, *subdm)); 40535de52c6dSVaclav Hapla PetscCall(DMPlexCopy_Internal(dm, PETSC_TRUE, PETSC_TRUE, *subdm)); 4054b47cd10cSMatthew G. Knepley // It is possible to obtain a surface mesh where some faces are in SF 4055b47cd10cSMatthew G. Knepley // We should either mark the mesh as having an overlap, or delete these from the SF 4056b47cd10cSMatthew G. Knepley PetscCall(DMPlexGetOverlap(dm, &overlap)); 4057b47cd10cSMatthew G. Knepley if (!overlap) { 4058b47cd10cSMatthew G. Knepley PetscSF sf; 4059b47cd10cSMatthew G. Knepley const PetscInt *leaves; 4060b47cd10cSMatthew G. Knepley PetscInt cStart, cEnd, Nl; 4061b47cd10cSMatthew G. Knepley PetscBool hasSubcell = PETSC_FALSE, ghasSubcell; 4062b47cd10cSMatthew G. Knepley 4063b47cd10cSMatthew G. Knepley PetscCall(DMPlexGetHeightStratum(*subdm, 0, &cStart, &cEnd)); 4064b47cd10cSMatthew G. Knepley PetscCall(DMGetPointSF(*subdm, &sf)); 4065b47cd10cSMatthew G. Knepley PetscCall(PetscSFGetGraph(sf, NULL, &Nl, &leaves, NULL)); 4066b47cd10cSMatthew G. Knepley for (PetscInt l = 0; l < Nl; ++l) { 4067b47cd10cSMatthew G. Knepley const PetscInt point = leaves ? leaves[l] : l; 4068b47cd10cSMatthew G. Knepley 4069b47cd10cSMatthew G. Knepley if (point >= cStart && point < cEnd) { 4070b47cd10cSMatthew G. Knepley hasSubcell = PETSC_TRUE; 4071b47cd10cSMatthew G. Knepley break; 4072b47cd10cSMatthew G. Knepley } 4073b47cd10cSMatthew G. Knepley } 4074b47cd10cSMatthew G. Knepley PetscCall(MPIU_Allreduce(&hasSubcell, &ghasSubcell, 1, MPIU_BOOL, MPI_LOR, PetscObjectComm((PetscObject)dm))); 4075b47cd10cSMatthew G. Knepley if (ghasSubcell) PetscCall(DMPlexSetOverlap(*subdm, NULL, 1)); 4076b47cd10cSMatthew G. Knepley } 40773ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4078bec263e5SMatthew G. Knepley } 4079bec263e5SMatthew G. Knepley 408064beef6dSMatthew G. Knepley /*@ 408120f4b53cSBarry Smith DMPlexGetSubpointMap - Returns a `DMLabel` with point dimension as values 408264beef6dSMatthew G. Knepley 408364beef6dSMatthew G. Knepley Input Parameter: 408420f4b53cSBarry Smith . dm - The submesh `DM` 408564beef6dSMatthew G. Knepley 408664beef6dSMatthew G. Knepley Output Parameter: 408720f4b53cSBarry Smith . subpointMap - The `DMLabel` of all the points from the original mesh in this submesh, or `NULL` if this is not a submesh 408864beef6dSMatthew G. Knepley 408964beef6dSMatthew G. Knepley Level: developer 409064beef6dSMatthew G. Knepley 40911cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexCreateSubmesh()`, `DMPlexGetSubpointIS()` 409264beef6dSMatthew G. Knepley @*/ 4093d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexGetSubpointMap(DM dm, DMLabel *subpointMap) 4094d71ae5a4SJacob Faibussowitsch { 4095e6ccafaeSMatthew G Knepley PetscFunctionBegin; 4096e6ccafaeSMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 40974f572ea9SToby Isaac PetscAssertPointer(subpointMap, 2); 409865663942SMatthew G. Knepley *subpointMap = ((DM_Plex *)dm->data)->subpointMap; 40993ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4100e6ccafaeSMatthew G Knepley } 4101e6ccafaeSMatthew G Knepley 4102c08575a3SMatthew G. Knepley /*@ 410320f4b53cSBarry Smith DMPlexSetSubpointMap - Sets the `DMLabel` with point dimension as values 4104c08575a3SMatthew G. Knepley 4105c08575a3SMatthew G. Knepley Input Parameters: 410620f4b53cSBarry Smith + dm - The submesh `DM` 410720f4b53cSBarry Smith - subpointMap - The `DMLabel` of all the points from the original mesh in this submesh 4108c08575a3SMatthew G. Knepley 4109c08575a3SMatthew G. Knepley Level: developer 4110c08575a3SMatthew G. Knepley 411120f4b53cSBarry Smith Note: 411220f4b53cSBarry Smith Should normally not be called by the user, since it is set in `DMPlexCreateSubmesh()` 411320f4b53cSBarry Smith 41141cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexCreateSubmesh()`, `DMPlexGetSubpointIS()` 4115c08575a3SMatthew G. Knepley @*/ 4116d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexSetSubpointMap(DM dm, DMLabel subpointMap) 4117d71ae5a4SJacob Faibussowitsch { 4118e6ccafaeSMatthew G Knepley DM_Plex *mesh = (DM_Plex *)dm->data; 4119285d324eSMatthew G. Knepley DMLabel tmp; 4120e6ccafaeSMatthew G Knepley 4121e6ccafaeSMatthew G Knepley PetscFunctionBegin; 4122e6ccafaeSMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 4123285d324eSMatthew G. Knepley tmp = mesh->subpointMap; 4124e6ccafaeSMatthew G Knepley mesh->subpointMap = subpointMap; 41259566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)mesh->subpointMap)); 41269566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&tmp)); 41273ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4128e6ccafaeSMatthew G Knepley } 4129e6ccafaeSMatthew G Knepley 4130d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexCreateSubpointIS_Internal(DM dm, IS *subpointIS) 4131d71ae5a4SJacob Faibussowitsch { 413297d8846cSMatthew Knepley DMLabel spmap; 413397d8846cSMatthew Knepley PetscInt depth, d; 413497d8846cSMatthew Knepley 413597d8846cSMatthew Knepley PetscFunctionBegin; 41369566063dSJacob Faibussowitsch PetscCall(DMPlexGetSubpointMap(dm, &spmap)); 41379566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepth(dm, &depth)); 413897d8846cSMatthew Knepley if (spmap && depth >= 0) { 413997d8846cSMatthew Knepley DM_Plex *mesh = (DM_Plex *)dm->data; 414097d8846cSMatthew Knepley PetscInt *points, *depths; 414197d8846cSMatthew Knepley PetscInt pStart, pEnd, p, off; 414297d8846cSMatthew Knepley 41439566063dSJacob Faibussowitsch PetscCall(DMPlexGetChart(dm, &pStart, &pEnd)); 414463a3b9bcSJacob Faibussowitsch PetscCheck(!pStart, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Submeshes must start the point numbering at 0, not %" PetscInt_FMT, pStart); 41459566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(pEnd, &points)); 41469566063dSJacob Faibussowitsch PetscCall(DMGetWorkArray(dm, depth + 1, MPIU_INT, &depths)); 414797d8846cSMatthew Knepley depths[0] = depth; 414897d8846cSMatthew Knepley depths[1] = 0; 4149ad540459SPierre Jolivet for (d = 2; d <= depth; ++d) depths[d] = depth + 1 - d; 415097d8846cSMatthew Knepley for (d = 0, off = 0; d <= depth; ++d) { 415197d8846cSMatthew Knepley const PetscInt dep = depths[d]; 415297d8846cSMatthew Knepley PetscInt depStart, depEnd, n; 415397d8846cSMatthew Knepley 41549566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthStratum(dm, dep, &depStart, &depEnd)); 41559566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumSize(spmap, dep, &n)); 415697d8846cSMatthew Knepley if (((d < 2) && (depth > 1)) || (d == 1)) { /* Only check vertices and cells for now since the map is broken for others */ 415763a3b9bcSJacob Faibussowitsch PetscCheck(n == depEnd - depStart, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "The number of mapped submesh points %" PetscInt_FMT " at depth %" PetscInt_FMT " should be %" PetscInt_FMT, n, dep, depEnd - depStart); 415897d8846cSMatthew Knepley } else { 415997d8846cSMatthew Knepley if (!n) { 416097d8846cSMatthew Knepley if (d == 0) { 416197d8846cSMatthew Knepley /* Missing cells */ 416297d8846cSMatthew Knepley for (p = 0; p < depEnd - depStart; ++p, ++off) points[off] = -1; 416397d8846cSMatthew Knepley } else { 416497d8846cSMatthew Knepley /* Missing faces */ 416597d8846cSMatthew Knepley for (p = 0; p < depEnd - depStart; ++p, ++off) points[off] = PETSC_MAX_INT; 416697d8846cSMatthew Knepley } 416797d8846cSMatthew Knepley } 416897d8846cSMatthew Knepley } 416997d8846cSMatthew Knepley if (n) { 417097d8846cSMatthew Knepley IS is; 417197d8846cSMatthew Knepley const PetscInt *opoints; 417297d8846cSMatthew Knepley 41739566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(spmap, dep, &is)); 41749566063dSJacob Faibussowitsch PetscCall(ISGetIndices(is, &opoints)); 417597d8846cSMatthew Knepley for (p = 0; p < n; ++p, ++off) points[off] = opoints[p]; 41769566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(is, &opoints)); 41779566063dSJacob Faibussowitsch PetscCall(ISDestroy(&is)); 417897d8846cSMatthew Knepley } 417997d8846cSMatthew Knepley } 41809566063dSJacob Faibussowitsch PetscCall(DMRestoreWorkArray(dm, depth + 1, MPIU_INT, &depths)); 418163a3b9bcSJacob Faibussowitsch PetscCheck(off == pEnd, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "The number of mapped submesh points %" PetscInt_FMT " should be %" PetscInt_FMT, off, pEnd); 41829566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, pEnd, points, PETSC_OWN_POINTER, subpointIS)); 41839566063dSJacob Faibussowitsch PetscCall(PetscObjectStateGet((PetscObject)spmap, &mesh->subpointState)); 418497d8846cSMatthew Knepley } 41853ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 418697d8846cSMatthew Knepley } 418797d8846cSMatthew Knepley 418864beef6dSMatthew G. Knepley /*@ 418920f4b53cSBarry Smith DMPlexGetSubpointIS - Returns an `IS` covering the entire subdm chart with the original points as data 4190e6ccafaeSMatthew G Knepley 4191e6ccafaeSMatthew G Knepley Input Parameter: 419220f4b53cSBarry Smith . dm - The submesh `DM` 4193e6ccafaeSMatthew G Knepley 4194e6ccafaeSMatthew G Knepley Output Parameter: 419520f4b53cSBarry Smith . subpointIS - The `IS` of all the points from the original mesh in this submesh, or `NULL` if this is not a submesh 419664beef6dSMatthew G. Knepley 419764beef6dSMatthew G. Knepley Level: developer 419864beef6dSMatthew G. Knepley 419920f4b53cSBarry Smith Note: 420020f4b53cSBarry Smith This `IS` is guaranteed to be sorted by the construction of the submesh 420120f4b53cSBarry Smith 42021cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexCreateSubmesh()`, `DMPlexGetSubpointMap()` 420364beef6dSMatthew G. Knepley @*/ 4204d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexGetSubpointIS(DM dm, IS *subpointIS) 4205d71ae5a4SJacob Faibussowitsch { 420697d8846cSMatthew Knepley DM_Plex *mesh = (DM_Plex *)dm->data; 420797d8846cSMatthew Knepley DMLabel spmap; 420897d8846cSMatthew Knepley PetscObjectState state; 4209e6ccafaeSMatthew G Knepley 4210e6ccafaeSMatthew G Knepley PetscFunctionBegin; 4211e6ccafaeSMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 42124f572ea9SToby Isaac PetscAssertPointer(subpointIS, 2); 42139566063dSJacob Faibussowitsch PetscCall(DMPlexGetSubpointMap(dm, &spmap)); 42149566063dSJacob Faibussowitsch PetscCall(PetscObjectStateGet((PetscObject)spmap, &state)); 42159566063dSJacob Faibussowitsch if (state != mesh->subpointState || !mesh->subpointIS) PetscCall(DMPlexCreateSubpointIS_Internal(dm, &mesh->subpointIS)); 421697d8846cSMatthew Knepley *subpointIS = mesh->subpointIS; 42173ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4218e6ccafaeSMatthew G Knepley } 4219559a1558SMatthew G. Knepley 4220559a1558SMatthew G. Knepley /*@ 422120f4b53cSBarry Smith DMGetEnclosureRelation - Get the relationship between `dmA` and `dmB` 4222559a1558SMatthew G. Knepley 4223559a1558SMatthew G. Knepley Input Parameters: 422420f4b53cSBarry Smith + dmA - The first `DM` 422520f4b53cSBarry Smith - dmB - The second `DM` 4226559a1558SMatthew G. Knepley 4227559a1558SMatthew G. Knepley Output Parameter: 422820f4b53cSBarry Smith . rel - The relation of `dmA` to `dmB` 4229559a1558SMatthew G. Knepley 4230a6e0b375SMatthew G. Knepley Level: intermediate 4231559a1558SMatthew G. Knepley 42321cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMGetEnclosurePoint()` 4233559a1558SMatthew G. Knepley @*/ 4234d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetEnclosureRelation(DM dmA, DM dmB, DMEnclosureType *rel) 4235d71ae5a4SJacob Faibussowitsch { 4236a6e0b375SMatthew G. Knepley DM plexA, plexB, sdm; 4237559a1558SMatthew G. Knepley DMLabel spmap; 4238a6e0b375SMatthew G. Knepley PetscInt pStartA, pEndA, pStartB, pEndB, NpA, NpB; 4239559a1558SMatthew G. Knepley 424044171101SMatthew G. Knepley PetscFunctionBegin; 42414f572ea9SToby Isaac PetscAssertPointer(rel, 3); 4242a6e0b375SMatthew G. Knepley *rel = DM_ENC_NONE; 42433ba16761SJacob Faibussowitsch if (!dmA || !dmB) PetscFunctionReturn(PETSC_SUCCESS); 4244a6e0b375SMatthew G. Knepley PetscValidHeaderSpecific(dmA, DM_CLASSID, 1); 4245064a246eSJacob Faibussowitsch PetscValidHeaderSpecific(dmB, DM_CLASSID, 2); 42469371c9d4SSatish Balay if (dmA == dmB) { 42479371c9d4SSatish Balay *rel = DM_ENC_EQUALITY; 42483ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 42499371c9d4SSatish Balay } 42509566063dSJacob Faibussowitsch PetscCall(DMConvert(dmA, DMPLEX, &plexA)); 42519566063dSJacob Faibussowitsch PetscCall(DMConvert(dmB, DMPLEX, &plexB)); 42529566063dSJacob Faibussowitsch PetscCall(DMPlexGetChart(plexA, &pStartA, &pEndA)); 42539566063dSJacob Faibussowitsch PetscCall(DMPlexGetChart(plexB, &pStartB, &pEndB)); 4254a6e0b375SMatthew G. Knepley /* Assumption 1: subDMs have smaller charts than the DMs that they originate from 4255a6e0b375SMatthew G. Knepley - The degenerate case of a subdomain which includes all of the domain on some process can be treated as equality */ 4256a6e0b375SMatthew G. Knepley if ((pStartA == pStartB) && (pEndA == pEndB)) { 4257a6e0b375SMatthew G. Knepley *rel = DM_ENC_EQUALITY; 4258a6e0b375SMatthew G. Knepley goto end; 4259559a1558SMatthew G. Knepley } 4260a6e0b375SMatthew G. Knepley NpA = pEndA - pStartA; 4261a6e0b375SMatthew G. Knepley NpB = pEndB - pStartB; 4262a6e0b375SMatthew G. Knepley if (NpA == NpB) goto end; 4263a6e0b375SMatthew G. Knepley sdm = NpA > NpB ? plexB : plexA; /* The other is the original, enclosing dm */ 42649566063dSJacob Faibussowitsch PetscCall(DMPlexGetSubpointMap(sdm, &spmap)); 4265a6e0b375SMatthew G. Knepley if (!spmap) goto end; 4266a6e0b375SMatthew G. Knepley /* TODO Check the space mapped to by subpointMap is same size as dm */ 4267a6e0b375SMatthew G. Knepley if (NpA > NpB) { 4268a6e0b375SMatthew G. Knepley *rel = DM_ENC_SUPERMESH; 4269a6e0b375SMatthew G. Knepley } else { 4270a6e0b375SMatthew G. Knepley *rel = DM_ENC_SUBMESH; 4271a6e0b375SMatthew G. Knepley } 4272a6e0b375SMatthew G. Knepley end: 42739566063dSJacob Faibussowitsch PetscCall(DMDestroy(&plexA)); 42749566063dSJacob Faibussowitsch PetscCall(DMDestroy(&plexB)); 42753ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4276559a1558SMatthew G. Knepley } 427744171101SMatthew G. Knepley 427844171101SMatthew G. Knepley /*@ 427920f4b53cSBarry Smith DMGetEnclosurePoint - Get the point `pA` in `dmA` which corresponds to the point `pB` in `dmB` 428044171101SMatthew G. Knepley 428144171101SMatthew G. Knepley Input Parameters: 428220f4b53cSBarry Smith + dmA - The first `DM` 428320f4b53cSBarry Smith . dmB - The second `DM` 428420f4b53cSBarry Smith . etype - The type of enclosure relation that `dmA` has to `dmB` 428520f4b53cSBarry Smith - pB - A point of `dmB` 428644171101SMatthew G. Knepley 428744171101SMatthew G. Knepley Output Parameter: 428820f4b53cSBarry Smith . pA - The corresponding point of `dmA` 428944171101SMatthew G. Knepley 4290a6e0b375SMatthew G. Knepley Level: intermediate 429144171101SMatthew G. Knepley 42921cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMGetEnclosureRelation()` 429344171101SMatthew G. Knepley @*/ 4294d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetEnclosurePoint(DM dmA, DM dmB, DMEnclosureType etype, PetscInt pB, PetscInt *pA) 4295d71ae5a4SJacob Faibussowitsch { 4296a6e0b375SMatthew G. Knepley DM sdm; 4297a6e0b375SMatthew G. Knepley IS subpointIS; 4298a6e0b375SMatthew G. Knepley const PetscInt *subpoints; 4299a6e0b375SMatthew G. Knepley PetscInt numSubpoints; 430044171101SMatthew G. Knepley 430144171101SMatthew G. Knepley PetscFunctionBegin; 4302a6e0b375SMatthew G. Knepley /* TODO Cache the IS, making it look like an index */ 4303a6e0b375SMatthew G. Knepley switch (etype) { 4304a6e0b375SMatthew G. Knepley case DM_ENC_SUPERMESH: 4305a6e0b375SMatthew G. Knepley sdm = dmB; 43069566063dSJacob Faibussowitsch PetscCall(DMPlexGetSubpointIS(sdm, &subpointIS)); 43079566063dSJacob Faibussowitsch PetscCall(ISGetIndices(subpointIS, &subpoints)); 4308a6e0b375SMatthew G. Knepley *pA = subpoints[pB]; 43099566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(subpointIS, &subpoints)); 4310a6e0b375SMatthew G. Knepley break; 4311a6e0b375SMatthew G. Knepley case DM_ENC_SUBMESH: 4312a6e0b375SMatthew G. Knepley sdm = dmA; 43139566063dSJacob Faibussowitsch PetscCall(DMPlexGetSubpointIS(sdm, &subpointIS)); 43149566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(subpointIS, &numSubpoints)); 43159566063dSJacob Faibussowitsch PetscCall(ISGetIndices(subpointIS, &subpoints)); 43169566063dSJacob Faibussowitsch PetscCall(PetscFindInt(pB, numSubpoints, subpoints, pA)); 4317a6e0b375SMatthew G. Knepley if (*pA < 0) { 43189566063dSJacob Faibussowitsch PetscCall(DMViewFromOptions(dmA, NULL, "-dm_enc_A_view")); 43199566063dSJacob Faibussowitsch PetscCall(DMViewFromOptions(dmB, NULL, "-dm_enc_B_view")); 432063a3b9bcSJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Point %" PetscInt_FMT " not found in submesh", pB); 4321a6e0b375SMatthew G. Knepley } 43229566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(subpointIS, &subpoints)); 4323a6e0b375SMatthew G. Knepley break; 4324a6e0b375SMatthew G. Knepley case DM_ENC_EQUALITY: 4325d71ae5a4SJacob Faibussowitsch case DM_ENC_NONE: 4326d71ae5a4SJacob Faibussowitsch *pA = pB; 4327d71ae5a4SJacob Faibussowitsch break; 43289371c9d4SSatish Balay case DM_ENC_UNKNOWN: { 4329a6e0b375SMatthew G. Knepley DMEnclosureType enc; 433044171101SMatthew G. Knepley 43319566063dSJacob Faibussowitsch PetscCall(DMGetEnclosureRelation(dmA, dmB, &enc)); 43329566063dSJacob Faibussowitsch PetscCall(DMGetEnclosurePoint(dmA, dmB, enc, pB, pA)); 43339371c9d4SSatish Balay } break; 4334d71ae5a4SJacob Faibussowitsch default: 4335d71ae5a4SJacob Faibussowitsch SETERRQ(PetscObjectComm((PetscObject)dmA), PETSC_ERR_ARG_OUTOFRANGE, "Invalid enclosure type %d", (int)etype); 433644171101SMatthew G. Knepley } 43373ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 433844171101SMatthew G. Knepley } 4339