xref: /petsc/src/dm/impls/plex/plexsubmesh.c (revision 92ef8ba20e3bb0a310fe0e1155582d7cee8094fb)
1af0996ceSBarry Smith #include <petsc/private/dmpleximpl.h>    /*I      "petscdmplex.h"    I*/
2c58f1c22SToby Isaac #include <petsc/private/dmlabelimpl.h>   /*I      "petscdmlabel.h"   I*/
30c312b8eSJed Brown #include <petscsf.h>
4e6ccafaeSMatthew G Knepley 
5412e9a14SMatthew G. Knepley static PetscErrorCode DMPlexCellIsHybrid_Internal(DM dm, PetscInt p, PetscBool *isHybrid)
6412e9a14SMatthew G. Knepley {
7412e9a14SMatthew G. Knepley   DMPolytopeType ct;
8412e9a14SMatthew G. Knepley 
9412e9a14SMatthew G. Knepley   PetscFunctionBegin;
109566063dSJacob Faibussowitsch   PetscCall(DMPlexGetCellType(dm, p, &ct));
11412e9a14SMatthew G. Knepley   switch (ct) {
12412e9a14SMatthew G. Knepley     case DM_POLYTOPE_POINT_PRISM_TENSOR:
13412e9a14SMatthew G. Knepley     case DM_POLYTOPE_SEG_PRISM_TENSOR:
14412e9a14SMatthew G. Knepley     case DM_POLYTOPE_TRI_PRISM_TENSOR:
15412e9a14SMatthew G. Knepley     case DM_POLYTOPE_QUAD_PRISM_TENSOR:
16412e9a14SMatthew G. Knepley       *isHybrid = PETSC_TRUE;
17412e9a14SMatthew G. Knepley     default: *isHybrid = PETSC_FALSE;
18412e9a14SMatthew G. Knepley   }
19412e9a14SMatthew G. Knepley   PetscFunctionReturn(0);
20412e9a14SMatthew G. Knepley }
21412e9a14SMatthew G. Knepley 
22412e9a14SMatthew G. Knepley static PetscErrorCode DMPlexGetTensorPrismBounds_Internal(DM dm, PetscInt dim, PetscInt *cStart, PetscInt *cEnd)
23412e9a14SMatthew G. Knepley {
24412e9a14SMatthew G. Knepley   DMLabel        ctLabel;
25412e9a14SMatthew G. Knepley 
26412e9a14SMatthew G. Knepley   PetscFunctionBegin;
27412e9a14SMatthew G. Knepley   if (cStart) *cStart = -1;
28412e9a14SMatthew G. Knepley   if (cEnd)   *cEnd   = -1;
299566063dSJacob Faibussowitsch   PetscCall(DMPlexGetCellTypeLabel(dm, &ctLabel));
30412e9a14SMatthew G. Knepley   switch (dim) {
319566063dSJacob Faibussowitsch     case 1: PetscCall(DMLabelGetStratumBounds(ctLabel, DM_POLYTOPE_POINT_PRISM_TENSOR, cStart, cEnd));break;
329566063dSJacob Faibussowitsch     case 2: PetscCall(DMLabelGetStratumBounds(ctLabel, DM_POLYTOPE_SEG_PRISM_TENSOR, cStart, cEnd));break;
33412e9a14SMatthew G. Knepley     case 3:
349566063dSJacob Faibussowitsch       PetscCall(DMLabelGetStratumBounds(ctLabel, DM_POLYTOPE_TRI_PRISM_TENSOR, cStart, cEnd));
359566063dSJacob Faibussowitsch       if (*cStart < 0) PetscCall(DMLabelGetStratumBounds(ctLabel, DM_POLYTOPE_QUAD_PRISM_TENSOR, cStart, cEnd));
36412e9a14SMatthew G. Knepley       break;
37412e9a14SMatthew G. Knepley     default: PetscFunctionReturn(0);
38412e9a14SMatthew G. Knepley   }
39412e9a14SMatthew G. Knepley   PetscFunctionReturn(0);
40412e9a14SMatthew G. Knepley }
41412e9a14SMatthew G. Knepley 
42e752be1aSMatthew G. Knepley static PetscErrorCode DMPlexMarkBoundaryFaces_Internal(DM dm, PetscInt val, PetscInt cellHeight, DMLabel label)
4330560a7bSMatthew G. Knepley {
4430560a7bSMatthew G. Knepley   PetscInt       fStart, fEnd, f;
4530560a7bSMatthew G. Knepley 
4630560a7bSMatthew G. Knepley   PetscFunctionBegin;
479566063dSJacob Faibussowitsch   PetscCall(DMPlexGetHeightStratum(dm, cellHeight+1, &fStart, &fEnd));
4830560a7bSMatthew G. Knepley   for (f = fStart; f < fEnd; ++f) {
4930560a7bSMatthew G. Knepley     PetscInt supportSize;
5030560a7bSMatthew G. Knepley 
519566063dSJacob Faibussowitsch     PetscCall(DMPlexGetSupportSize(dm, f, &supportSize));
52e752be1aSMatthew G. Knepley     if (supportSize == 1) {
53e752be1aSMatthew G. Knepley       if (val < 0) {
54e752be1aSMatthew G. Knepley         PetscInt *closure = NULL;
55e752be1aSMatthew G. Knepley         PetscInt  clSize, cl, cval;
56e752be1aSMatthew G. Knepley 
579566063dSJacob Faibussowitsch         PetscCall(DMPlexGetTransitiveClosure(dm, f, PETSC_TRUE, &clSize, &closure));
58e752be1aSMatthew G. Knepley         for (cl = 0; cl < clSize*2; cl += 2) {
599566063dSJacob Faibussowitsch           PetscCall(DMLabelGetValue(label, closure[cl], &cval));
60e752be1aSMatthew G. Knepley           if (cval < 0) continue;
619566063dSJacob Faibussowitsch           PetscCall(DMLabelSetValue(label, f, cval));
62e752be1aSMatthew G. Knepley           break;
63e752be1aSMatthew G. Knepley         }
649566063dSJacob Faibussowitsch         if (cl == clSize*2) PetscCall(DMLabelSetValue(label, f, 1));
659566063dSJacob Faibussowitsch         PetscCall(DMPlexRestoreTransitiveClosure(dm, f, PETSC_TRUE, &clSize, &closure));
66e752be1aSMatthew G. Knepley       } else {
679566063dSJacob Faibussowitsch         PetscCall(DMLabelSetValue(label, f, val));
68e752be1aSMatthew G. Knepley       }
69e752be1aSMatthew G. Knepley     }
7030560a7bSMatthew G. Knepley   }
7130560a7bSMatthew G. Knepley   PetscFunctionReturn(0);
7230560a7bSMatthew G. Knepley }
7330560a7bSMatthew G. Knepley 
74cd0c2139SMatthew G Knepley /*@
75cd0c2139SMatthew G Knepley   DMPlexMarkBoundaryFaces - Mark all faces on the boundary
76cd0c2139SMatthew G Knepley 
77cd0c2139SMatthew G Knepley   Not Collective
78cd0c2139SMatthew G Knepley 
79d8d19677SJose E. Roman   Input Parameters:
80e752be1aSMatthew G. Knepley + dm - The original DM
81e752be1aSMatthew G. Knepley - val - The marker value, or PETSC_DETERMINE to use some value in the closure (or 1 if none are found)
82cd0c2139SMatthew G Knepley 
83cd0c2139SMatthew G Knepley   Output Parameter:
84e752be1aSMatthew G. Knepley . label - The DMLabel marking boundary faces with the given value
85cd0c2139SMatthew G Knepley 
86cd0c2139SMatthew G Knepley   Level: developer
87cd0c2139SMatthew G Knepley 
88db781477SPatrick Sanan .seealso: `DMLabelCreate()`, `DMCreateLabel()`
8909f723d9SJed Brown @*/
90e752be1aSMatthew G. Knepley PetscErrorCode DMPlexMarkBoundaryFaces(DM dm, PetscInt val, DMLabel label)
91cd0c2139SMatthew G Knepley {
92827c4036SVaclav Hapla   DMPlexInterpolatedFlag  flg;
93cd0c2139SMatthew G Knepley 
94cd0c2139SMatthew G Knepley   PetscFunctionBegin;
95827c4036SVaclav Hapla   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
969566063dSJacob Faibussowitsch   PetscCall(DMPlexIsInterpolated(dm, &flg));
9708401ef6SPierre Jolivet   PetscCheck(flg == DMPLEX_INTERPOLATED_FULL,PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "DM is not fully interpolated on this rank");
989566063dSJacob Faibussowitsch   PetscCall(DMPlexMarkBoundaryFaces_Internal(dm, val, 0, label));
99cd0c2139SMatthew G Knepley   PetscFunctionReturn(0);
100cd0c2139SMatthew G Knepley }
101cd0c2139SMatthew G Knepley 
102c08575a3SMatthew G. Knepley static PetscErrorCode DMPlexLabelComplete_Internal(DM dm, DMLabel label, PetscBool completeCells)
103b0bf5782SToby Isaac {
104b0bf5782SToby Isaac   IS              valueIS;
105ac51f24eSSander Arens   PetscSF         sfPoint;
106b0bf5782SToby Isaac   const PetscInt *values;
107ac51f24eSSander Arens   PetscInt        numValues, v, cStart, cEnd, nroots;
108b0bf5782SToby Isaac 
109b0bf5782SToby Isaac   PetscFunctionBegin;
1109566063dSJacob Faibussowitsch   PetscCall(DMLabelGetNumValues(label, &numValues));
1119566063dSJacob Faibussowitsch   PetscCall(DMLabelGetValueIS(label, &valueIS));
1129566063dSJacob Faibussowitsch   PetscCall(DMPlexGetHeightStratum(dm,0,&cStart,&cEnd));
1139566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(valueIS, &values));
114b0bf5782SToby Isaac   for (v = 0; v < numValues; ++v) {
115b0bf5782SToby Isaac     IS              pointIS;
116b0bf5782SToby Isaac     const PetscInt *points;
117b0bf5782SToby Isaac     PetscInt        numPoints, p;
118b0bf5782SToby Isaac 
1199566063dSJacob Faibussowitsch     PetscCall(DMLabelGetStratumSize(label, values[v], &numPoints));
1209566063dSJacob Faibussowitsch     PetscCall(DMLabelGetStratumIS(label, values[v], &pointIS));
1219566063dSJacob Faibussowitsch     PetscCall(ISGetIndices(pointIS, &points));
122b0bf5782SToby Isaac     for (p = 0; p < numPoints; ++p) {
123b0bf5782SToby Isaac       PetscInt  q = points[p];
124b0bf5782SToby Isaac       PetscInt *closure = NULL;
125b0bf5782SToby Isaac       PetscInt  closureSize, c;
126b0bf5782SToby Isaac 
127b0bf5782SToby Isaac       if (cStart <= q && q < cEnd && !completeCells) { /* skip cells */
128b0bf5782SToby Isaac         continue;
129b0bf5782SToby Isaac       }
1309566063dSJacob Faibussowitsch       PetscCall(DMPlexGetTransitiveClosure(dm, q, PETSC_TRUE, &closureSize, &closure));
131b0bf5782SToby Isaac       for (c = 0; c < closureSize*2; c += 2) {
1329566063dSJacob Faibussowitsch         PetscCall(DMLabelSetValue(label, closure[c], values[v]));
133b0bf5782SToby Isaac       }
1349566063dSJacob Faibussowitsch       PetscCall(DMPlexRestoreTransitiveClosure(dm, q, PETSC_TRUE, &closureSize, &closure));
135b0bf5782SToby Isaac     }
1369566063dSJacob Faibussowitsch     PetscCall(ISRestoreIndices(pointIS, &points));
1379566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&pointIS));
138b0bf5782SToby Isaac   }
1399566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(valueIS, &values));
1409566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&valueIS));
1419566063dSJacob Faibussowitsch   PetscCall(DMGetPointSF(dm, &sfPoint));
1429566063dSJacob Faibussowitsch   PetscCall(PetscSFGetGraph(sfPoint, &nroots, NULL, NULL, NULL));
143ac51f24eSSander Arens   if (nroots >= 0) {
14426279d81SSanderA     DMLabel         lblRoots, lblLeaves;
14526279d81SSanderA     IS              valueIS, pointIS;
14626279d81SSanderA     const PetscInt *values;
14726279d81SSanderA     PetscInt        numValues, v;
14826279d81SSanderA 
14926279d81SSanderA     /* Pull point contributions from remote leaves into local roots */
1509566063dSJacob Faibussowitsch     PetscCall(DMLabelGather(label, sfPoint, &lblLeaves));
1519566063dSJacob Faibussowitsch     PetscCall(DMLabelGetValueIS(lblLeaves, &valueIS));
1529566063dSJacob Faibussowitsch     PetscCall(ISGetLocalSize(valueIS, &numValues));
1539566063dSJacob Faibussowitsch     PetscCall(ISGetIndices(valueIS, &values));
15426279d81SSanderA     for (v = 0; v < numValues; ++v) {
15526279d81SSanderA       const PetscInt value = values[v];
15626279d81SSanderA 
1579566063dSJacob Faibussowitsch       PetscCall(DMLabelGetStratumIS(lblLeaves, value, &pointIS));
1589566063dSJacob Faibussowitsch       PetscCall(DMLabelInsertIS(label, pointIS, value));
1599566063dSJacob Faibussowitsch       PetscCall(ISDestroy(&pointIS));
16026279d81SSanderA     }
1619566063dSJacob Faibussowitsch     PetscCall(ISRestoreIndices(valueIS, &values));
1629566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&valueIS));
1639566063dSJacob Faibussowitsch     PetscCall(DMLabelDestroy(&lblLeaves));
16426279d81SSanderA     /* Push point contributions from roots into remote leaves */
1659566063dSJacob Faibussowitsch     PetscCall(DMLabelDistribute(label, sfPoint, &lblRoots));
1669566063dSJacob Faibussowitsch     PetscCall(DMLabelGetValueIS(lblRoots, &valueIS));
1679566063dSJacob Faibussowitsch     PetscCall(ISGetLocalSize(valueIS, &numValues));
1689566063dSJacob Faibussowitsch     PetscCall(ISGetIndices(valueIS, &values));
16926279d81SSanderA     for (v = 0; v < numValues; ++v) {
17026279d81SSanderA       const PetscInt value = values[v];
17126279d81SSanderA 
1729566063dSJacob Faibussowitsch       PetscCall(DMLabelGetStratumIS(lblRoots, value, &pointIS));
1739566063dSJacob Faibussowitsch       PetscCall(DMLabelInsertIS(label, pointIS, value));
1749566063dSJacob Faibussowitsch       PetscCall(ISDestroy(&pointIS));
17526279d81SSanderA     }
1769566063dSJacob Faibussowitsch     PetscCall(ISRestoreIndices(valueIS, &values));
1779566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&valueIS));
1789566063dSJacob Faibussowitsch     PetscCall(DMLabelDestroy(&lblRoots));
17926279d81SSanderA   }
180b0bf5782SToby Isaac   PetscFunctionReturn(0);
181b0bf5782SToby Isaac }
182b0bf5782SToby Isaac 
1832be2b188SMatthew G Knepley /*@
1842be2b188SMatthew G Knepley   DMPlexLabelComplete - Starting with a label marking points on a surface, we add the transitive closure to the surface
1852be2b188SMatthew G Knepley 
1862be2b188SMatthew G Knepley   Input Parameters:
1872be2b188SMatthew G Knepley + dm - The DM
1882be2b188SMatthew G Knepley - label - A DMLabel marking the surface points
1892be2b188SMatthew G Knepley 
1902be2b188SMatthew G Knepley   Output Parameter:
1912be2b188SMatthew G Knepley . label - A DMLabel marking all surface points in the transitive closure
1922be2b188SMatthew G Knepley 
1932be2b188SMatthew G Knepley   Level: developer
1942be2b188SMatthew G Knepley 
195db781477SPatrick Sanan .seealso: `DMPlexLabelCohesiveComplete()`
1962be2b188SMatthew G Knepley @*/
1972be2b188SMatthew G Knepley PetscErrorCode DMPlexLabelComplete(DM dm, DMLabel label)
1982be2b188SMatthew G Knepley {
1992be2b188SMatthew G Knepley   PetscFunctionBegin;
2009566063dSJacob Faibussowitsch   PetscCall(DMPlexLabelComplete_Internal(dm, label, PETSC_TRUE));
2012be2b188SMatthew G Knepley   PetscFunctionReturn(0);
2022be2b188SMatthew G Knepley }
2032be2b188SMatthew G Knepley 
2046cf0e42fSMatthew G. Knepley /*@
205a6e0b375SMatthew G. Knepley   DMPlexLabelAddCells - Starting with a label marking points on a surface, we add a cell for each point
2066cf0e42fSMatthew G. Knepley 
2076cf0e42fSMatthew G. Knepley   Input Parameters:
2086cf0e42fSMatthew G. Knepley + dm - The DM
2096cf0e42fSMatthew G. Knepley - label - A DMLabel marking the surface points
2106cf0e42fSMatthew G. Knepley 
2116cf0e42fSMatthew G. Knepley   Output Parameter:
2126cf0e42fSMatthew G. Knepley . label - A DMLabel incorporating cells
2136cf0e42fSMatthew G. Knepley 
2146cf0e42fSMatthew G. Knepley   Level: developer
2156cf0e42fSMatthew G. Knepley 
2166cf0e42fSMatthew G. Knepley   Note: The cells allow FEM boundary conditions to be applied using the cell geometry
2176cf0e42fSMatthew G. Knepley 
218db781477SPatrick Sanan .seealso: `DMPlexLabelAddFaceCells()`, `DMPlexLabelComplete()`, `DMPlexLabelCohesiveComplete()`
2196cf0e42fSMatthew G. Knepley @*/
2206cf0e42fSMatthew G. Knepley PetscErrorCode DMPlexLabelAddCells(DM dm, DMLabel label)
2216cf0e42fSMatthew G. Knepley {
2226cf0e42fSMatthew G. Knepley   IS              valueIS;
2236cf0e42fSMatthew G. Knepley   const PetscInt *values;
224485ad865SMatthew G. Knepley   PetscInt        numValues, v, cStart, cEnd;
2256cf0e42fSMatthew G. Knepley 
2266cf0e42fSMatthew G. Knepley   PetscFunctionBegin;
2279566063dSJacob Faibussowitsch   PetscCall(DMPlexGetSimplexOrBoxCells(dm, 0, &cStart, &cEnd));
2289566063dSJacob Faibussowitsch   PetscCall(DMLabelGetNumValues(label, &numValues));
2299566063dSJacob Faibussowitsch   PetscCall(DMLabelGetValueIS(label, &valueIS));
2309566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(valueIS, &values));
2316cf0e42fSMatthew G. Knepley   for (v = 0; v < numValues; ++v) {
2326cf0e42fSMatthew G. Knepley     IS              pointIS;
2336cf0e42fSMatthew G. Knepley     const PetscInt *points;
2346cf0e42fSMatthew G. Knepley     PetscInt        numPoints, p;
2356cf0e42fSMatthew G. Knepley 
2369566063dSJacob Faibussowitsch     PetscCall(DMLabelGetStratumSize(label, values[v], &numPoints));
2379566063dSJacob Faibussowitsch     PetscCall(DMLabelGetStratumIS(label, values[v], &pointIS));
2389566063dSJacob Faibussowitsch     PetscCall(ISGetIndices(pointIS, &points));
2396cf0e42fSMatthew G. Knepley     for (p = 0; p < numPoints; ++p) {
2406cf0e42fSMatthew G. Knepley       PetscInt *closure = NULL;
241a6e0b375SMatthew G. Knepley       PetscInt  closureSize, cl;
2426cf0e42fSMatthew G. Knepley 
2439566063dSJacob Faibussowitsch       PetscCall(DMPlexGetTransitiveClosure(dm, points[p], PETSC_FALSE, &closureSize, &closure));
24422eabd52SMatthew G. Knepley       for (cl = closureSize-1; cl > 0; --cl) {
245a6e0b375SMatthew G. Knepley         const PetscInt cell = closure[cl*2];
2469566063dSJacob Faibussowitsch         if ((cell >= cStart) && (cell < cEnd)) {PetscCall(DMLabelSetValue(label, cell, values[v])); break;}
24722eabd52SMatthew G. Knepley       }
2489566063dSJacob Faibussowitsch       PetscCall(DMPlexRestoreTransitiveClosure(dm, points[p], PETSC_FALSE, &closureSize, &closure));
2496cf0e42fSMatthew G. Knepley     }
2509566063dSJacob Faibussowitsch     PetscCall(ISRestoreIndices(pointIS, &points));
2519566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&pointIS));
2526cf0e42fSMatthew G. Knepley   }
2539566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(valueIS, &values));
2549566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&valueIS));
2556cf0e42fSMatthew G. Knepley   PetscFunctionReturn(0);
2566cf0e42fSMatthew G. Knepley }
2576cf0e42fSMatthew G. Knepley 
258f402d5e4SToby Isaac /*@
259a6e0b375SMatthew G. Knepley   DMPlexLabelAddFaceCells - Starting with a label marking faces on a surface, we add a cell for each face
260a6e0b375SMatthew G. Knepley 
261a6e0b375SMatthew G. Knepley   Input Parameters:
262a6e0b375SMatthew G. Knepley + dm - The DM
263a6e0b375SMatthew G. Knepley - label - A DMLabel marking the surface points
264a6e0b375SMatthew G. Knepley 
265a6e0b375SMatthew G. Knepley   Output Parameter:
266a6e0b375SMatthew G. Knepley . label - A DMLabel incorporating cells
267a6e0b375SMatthew G. Knepley 
268a6e0b375SMatthew G. Knepley   Level: developer
269a6e0b375SMatthew G. Knepley 
270a6e0b375SMatthew G. Knepley   Note: The cells allow FEM boundary conditions to be applied using the cell geometry
271a6e0b375SMatthew G. Knepley 
272db781477SPatrick Sanan .seealso: `DMPlexLabelAddCells()`, `DMPlexLabelComplete()`, `DMPlexLabelCohesiveComplete()`
273a6e0b375SMatthew G. Knepley @*/
274a6e0b375SMatthew G. Knepley PetscErrorCode DMPlexLabelAddFaceCells(DM dm, DMLabel label)
275a6e0b375SMatthew G. Knepley {
276a6e0b375SMatthew G. Knepley   IS              valueIS;
277a6e0b375SMatthew G. Knepley   const PetscInt *values;
278a6e0b375SMatthew G. Knepley   PetscInt        numValues, v, cStart, cEnd, fStart, fEnd;
279a6e0b375SMatthew G. Knepley 
280a6e0b375SMatthew G. Knepley   PetscFunctionBegin;
2819566063dSJacob Faibussowitsch   PetscCall(DMPlexGetSimplexOrBoxCells(dm, 0, &cStart, &cEnd));
2829566063dSJacob Faibussowitsch   PetscCall(DMPlexGetHeightStratum(dm, 1, &fStart, &fEnd));
2839566063dSJacob Faibussowitsch   PetscCall(DMLabelGetNumValues(label, &numValues));
2849566063dSJacob Faibussowitsch   PetscCall(DMLabelGetValueIS(label, &valueIS));
2859566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(valueIS, &values));
286a6e0b375SMatthew G. Knepley   for (v = 0; v < numValues; ++v) {
287a6e0b375SMatthew G. Knepley     IS              pointIS;
288a6e0b375SMatthew G. Knepley     const PetscInt *points;
289a6e0b375SMatthew G. Knepley     PetscInt        numPoints, p;
290a6e0b375SMatthew G. Knepley 
2919566063dSJacob Faibussowitsch     PetscCall(DMLabelGetStratumSize(label, values[v], &numPoints));
2929566063dSJacob Faibussowitsch     PetscCall(DMLabelGetStratumIS(label, values[v], &pointIS));
2939566063dSJacob Faibussowitsch     PetscCall(ISGetIndices(pointIS, &points));
294a6e0b375SMatthew G. Knepley     for (p = 0; p < numPoints; ++p) {
295a6e0b375SMatthew G. Knepley       const PetscInt face = points[p];
296a6e0b375SMatthew G. Knepley       PetscInt      *closure = NULL;
297a6e0b375SMatthew G. Knepley       PetscInt       closureSize, cl;
298a6e0b375SMatthew G. Knepley 
299a6e0b375SMatthew G. Knepley       if ((face < fStart) || (face >= fEnd)) continue;
3009566063dSJacob Faibussowitsch       PetscCall(DMPlexGetTransitiveClosure(dm, face, PETSC_FALSE, &closureSize, &closure));
301a6e0b375SMatthew G. Knepley       for (cl = closureSize-1; cl > 0; --cl) {
302a6e0b375SMatthew G. Knepley         const PetscInt cell = closure[cl*2];
3039566063dSJacob Faibussowitsch         if ((cell >= cStart) && (cell < cEnd)) {PetscCall(DMLabelSetValue(label, cell, values[v])); break;}
304a6e0b375SMatthew G. Knepley       }
3059566063dSJacob Faibussowitsch       PetscCall(DMPlexRestoreTransitiveClosure(dm, face, PETSC_FALSE, &closureSize, &closure));
306a6e0b375SMatthew G. Knepley     }
3079566063dSJacob Faibussowitsch     PetscCall(ISRestoreIndices(pointIS, &points));
3089566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&pointIS));
309a6e0b375SMatthew G. Knepley   }
3109566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(valueIS, &values));
3119566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&valueIS));
312a6e0b375SMatthew G. Knepley   PetscFunctionReturn(0);
313a6e0b375SMatthew G. Knepley }
314a6e0b375SMatthew G. Knepley 
315a6e0b375SMatthew G. Knepley /*@
316f402d5e4SToby Isaac   DMPlexLabelClearCells - Remove cells from a label
317f402d5e4SToby Isaac 
318f402d5e4SToby Isaac   Input Parameters:
319f402d5e4SToby Isaac + dm - The DM
320f402d5e4SToby Isaac - label - A DMLabel marking surface points and their adjacent cells
321f402d5e4SToby Isaac 
322f402d5e4SToby Isaac   Output Parameter:
323f402d5e4SToby Isaac . label - A DMLabel without cells
324f402d5e4SToby Isaac 
325f402d5e4SToby Isaac   Level: developer
326f402d5e4SToby Isaac 
327a6e0b375SMatthew G. Knepley   Note: This undoes DMPlexLabelAddCells() or DMPlexLabelAddFaceCells()
328f402d5e4SToby Isaac 
329db781477SPatrick Sanan .seealso: `DMPlexLabelComplete()`, `DMPlexLabelCohesiveComplete()`, `DMPlexLabelAddCells()`
330f402d5e4SToby Isaac @*/
331f402d5e4SToby Isaac PetscErrorCode DMPlexLabelClearCells(DM dm, DMLabel label)
332f402d5e4SToby Isaac {
333f402d5e4SToby Isaac   IS              valueIS;
334f402d5e4SToby Isaac   const PetscInt *values;
335485ad865SMatthew G. Knepley   PetscInt        numValues, v, cStart, cEnd;
336f402d5e4SToby Isaac 
337f402d5e4SToby Isaac   PetscFunctionBegin;
3389566063dSJacob Faibussowitsch   PetscCall(DMPlexGetSimplexOrBoxCells(dm, 0, &cStart, &cEnd));
3399566063dSJacob Faibussowitsch   PetscCall(DMLabelGetNumValues(label, &numValues));
3409566063dSJacob Faibussowitsch   PetscCall(DMLabelGetValueIS(label, &valueIS));
3419566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(valueIS, &values));
342f402d5e4SToby Isaac   for (v = 0; v < numValues; ++v) {
343f402d5e4SToby Isaac     IS              pointIS;
344f402d5e4SToby Isaac     const PetscInt *points;
345f402d5e4SToby Isaac     PetscInt        numPoints, p;
346f402d5e4SToby Isaac 
3479566063dSJacob Faibussowitsch     PetscCall(DMLabelGetStratumSize(label, values[v], &numPoints));
3489566063dSJacob Faibussowitsch     PetscCall(DMLabelGetStratumIS(label, values[v], &pointIS));
3499566063dSJacob Faibussowitsch     PetscCall(ISGetIndices(pointIS, &points));
350f402d5e4SToby Isaac     for (p = 0; p < numPoints; ++p) {
351f402d5e4SToby Isaac       PetscInt point = points[p];
352f402d5e4SToby Isaac 
353f402d5e4SToby Isaac       if (point >= cStart && point < cEnd) {
3549566063dSJacob Faibussowitsch         PetscCall(DMLabelClearValue(label,point,values[v]));
355f402d5e4SToby Isaac       }
356f402d5e4SToby Isaac     }
3579566063dSJacob Faibussowitsch     PetscCall(ISRestoreIndices(pointIS, &points));
3589566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&pointIS));
359f402d5e4SToby Isaac   }
3609566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(valueIS, &values));
3619566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&valueIS));
362f402d5e4SToby Isaac   PetscFunctionReturn(0);
363f402d5e4SToby Isaac }
364f402d5e4SToby Isaac 
36559eef20bSToby Isaac /* take (oldEnd, added) pairs, ordered by height and convert them to (oldstart, newstart) pairs, ordered by ascending
36659eef20bSToby Isaac  * index (skipping first, which is (0,0)) */
3679fbee547SJacob Faibussowitsch static inline PetscErrorCode DMPlexShiftPointSetUp_Internal(PetscInt depth, PetscInt depthShift[])
368cd0c2139SMatthew G Knepley {
3692582d50cSToby Isaac   PetscInt d, off = 0;
3702582d50cSToby Isaac 
3712582d50cSToby Isaac   PetscFunctionBegin;
37259eef20bSToby Isaac   /* sort by (oldend): yes this is an O(n^2) sort, we expect depth <= 3 */
3730974a383SToby Isaac   for (d = 0; d < depth; d++) {
3742582d50cSToby Isaac     PetscInt firstd = d;
3750974a383SToby Isaac     PetscInt firstStart = depthShift[2*d];
3762582d50cSToby Isaac     PetscInt e;
3772582d50cSToby Isaac 
3782582d50cSToby Isaac     for (e = d+1; e <= depth; e++) {
3792582d50cSToby Isaac       if (depthShift[2*e] < firstStart) {
3802582d50cSToby Isaac         firstd = e;
3812582d50cSToby Isaac         firstStart = depthShift[2*d];
3822582d50cSToby Isaac       }
3832582d50cSToby Isaac     }
3842582d50cSToby Isaac     if (firstd != d) {
3852582d50cSToby Isaac       PetscInt swap[2];
3862582d50cSToby Isaac 
3872582d50cSToby Isaac       e = firstd;
3882582d50cSToby Isaac       swap[0] = depthShift[2*d];
3892582d50cSToby Isaac       swap[1] = depthShift[2*d+1];
3902582d50cSToby Isaac       depthShift[2*d]   = depthShift[2*e];
3912582d50cSToby Isaac       depthShift[2*d+1] = depthShift[2*e+1];
3922582d50cSToby Isaac       depthShift[2*e]   = swap[0];
3932582d50cSToby Isaac       depthShift[2*e+1] = swap[1];
3942582d50cSToby Isaac     }
3952582d50cSToby Isaac   }
3962582d50cSToby Isaac   /* convert (oldstart, added) to (oldstart, newstart) */
3970974a383SToby Isaac   for (d = 0; d <= depth; d++) {
3982582d50cSToby Isaac     off += depthShift[2*d+1];
39959eef20bSToby Isaac     depthShift[2*d+1] = depthShift[2*d] + off;
4002582d50cSToby Isaac   }
4012582d50cSToby Isaac   PetscFunctionReturn(0);
4022582d50cSToby Isaac }
4032582d50cSToby Isaac 
4042582d50cSToby Isaac /* depthShift is a list of (old, new) pairs */
4059fbee547SJacob Faibussowitsch static inline PetscInt DMPlexShiftPoint_Internal(PetscInt p, PetscInt depth, PetscInt depthShift[])
4062582d50cSToby Isaac {
4072582d50cSToby Isaac   PetscInt d;
4082582d50cSToby Isaac   PetscInt newOff = 0;
4092582d50cSToby Isaac 
4102582d50cSToby Isaac   for (d = 0; d <= depth; d++) {
4112582d50cSToby Isaac     if (p < depthShift[2*d]) return p + newOff;
4122582d50cSToby Isaac     else newOff = depthShift[2*d+1] - depthShift[2*d];
4132582d50cSToby Isaac   }
4140974a383SToby Isaac   return p + newOff;
4152582d50cSToby Isaac }
4162582d50cSToby Isaac 
4172582d50cSToby Isaac /* depthShift is a list of (old, new) pairs */
4189fbee547SJacob Faibussowitsch static inline PetscInt DMPlexShiftPointInverse_Internal(PetscInt p, PetscInt depth, PetscInt depthShift[])
4192582d50cSToby Isaac {
4202582d50cSToby Isaac   PetscInt d;
4212582d50cSToby Isaac   PetscInt newOff = 0;
4222582d50cSToby Isaac 
4232582d50cSToby Isaac   for (d = 0; d <= depth; d++) {
4242582d50cSToby Isaac     if (p < depthShift[2*d+1]) return p + newOff;
4252582d50cSToby Isaac     else newOff = depthShift[2*d] - depthShift[2*d+1];
4262582d50cSToby Isaac   }
4270974a383SToby Isaac   return p + newOff;
428cd0c2139SMatthew G Knepley }
429cd0c2139SMatthew G Knepley 
430cd0c2139SMatthew G Knepley static PetscErrorCode DMPlexShiftSizes_Internal(DM dm, PetscInt depthShift[], DM dmNew)
431cd0c2139SMatthew G Knepley {
432cd0c2139SMatthew G Knepley   PetscInt       depth = 0, d, pStart, pEnd, p;
433fa8e8ae5SToby Isaac   DMLabel        depthLabel;
434cd0c2139SMatthew G Knepley 
435cd0c2139SMatthew G Knepley   PetscFunctionBegin;
4369566063dSJacob Faibussowitsch   PetscCall(DMPlexGetDepth(dm, &depth));
437cd0c2139SMatthew G Knepley   if (depth < 0) PetscFunctionReturn(0);
438cd0c2139SMatthew G Knepley   /* Step 1: Expand chart */
4399566063dSJacob Faibussowitsch   PetscCall(DMPlexGetChart(dm, &pStart, &pEnd));
4400974a383SToby Isaac   pEnd = DMPlexShiftPoint_Internal(pEnd,depth,depthShift);
4419566063dSJacob Faibussowitsch   PetscCall(DMPlexSetChart(dmNew, pStart, pEnd));
4429566063dSJacob Faibussowitsch   PetscCall(DMCreateLabel(dmNew,"depth"));
4439566063dSJacob Faibussowitsch   PetscCall(DMPlexGetDepthLabel(dmNew,&depthLabel));
4449566063dSJacob Faibussowitsch   PetscCall(DMCreateLabel(dmNew, "celltype"));
445cd0c2139SMatthew G Knepley   /* Step 2: Set cone and support sizes */
446cd0c2139SMatthew G Knepley   for (d = 0; d <= depth; ++d) {
447fa8e8ae5SToby Isaac     PetscInt pStartNew, pEndNew;
448fa8e8ae5SToby Isaac     IS pIS;
449fa8e8ae5SToby Isaac 
4509566063dSJacob Faibussowitsch     PetscCall(DMPlexGetDepthStratum(dm, d, &pStart, &pEnd));
451fa8e8ae5SToby Isaac     pStartNew = DMPlexShiftPoint_Internal(pStart, depth, depthShift);
452fa8e8ae5SToby Isaac     pEndNew = DMPlexShiftPoint_Internal(pEnd, depth, depthShift);
4539566063dSJacob Faibussowitsch     PetscCall(ISCreateStride(PETSC_COMM_SELF, pEndNew - pStartNew, pStartNew, 1, &pIS));
4549566063dSJacob Faibussowitsch     PetscCall(DMLabelSetStratumIS(depthLabel, d, pIS));
4559566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&pIS));
456cd0c2139SMatthew G Knepley     for (p = pStart; p < pEnd; ++p) {
4572582d50cSToby Isaac       PetscInt       newp = DMPlexShiftPoint_Internal(p, depth, depthShift);
458cd0c2139SMatthew G Knepley       PetscInt       size;
459412e9a14SMatthew G. Knepley       DMPolytopeType ct;
460cd0c2139SMatthew G Knepley 
4619566063dSJacob Faibussowitsch       PetscCall(DMPlexGetConeSize(dm, p, &size));
4629566063dSJacob Faibussowitsch       PetscCall(DMPlexSetConeSize(dmNew, newp, size));
4639566063dSJacob Faibussowitsch       PetscCall(DMPlexGetSupportSize(dm, p, &size));
4649566063dSJacob Faibussowitsch       PetscCall(DMPlexSetSupportSize(dmNew, newp, size));
4659566063dSJacob Faibussowitsch       PetscCall(DMPlexGetCellType(dm, p, &ct));
4669566063dSJacob Faibussowitsch       PetscCall(DMPlexSetCellType(dmNew, newp, ct));
467cd0c2139SMatthew G Knepley     }
468cd0c2139SMatthew G Knepley   }
469cd0c2139SMatthew G Knepley   PetscFunctionReturn(0);
470cd0c2139SMatthew G Knepley }
471cd0c2139SMatthew G Knepley 
472cd0c2139SMatthew G Knepley static PetscErrorCode DMPlexShiftPoints_Internal(DM dm, PetscInt depthShift[], DM dmNew)
473cd0c2139SMatthew G Knepley {
4742582d50cSToby Isaac   PetscInt      *newpoints;
4752582d50cSToby Isaac   PetscInt       depth = 0, maxConeSize, maxSupportSize, maxConeSizeNew, maxSupportSizeNew, pStart, pEnd, p;
476cd0c2139SMatthew G Knepley 
477cd0c2139SMatthew G Knepley   PetscFunctionBegin;
4789566063dSJacob Faibussowitsch   PetscCall(DMPlexGetDepth(dm, &depth));
479cd0c2139SMatthew G Knepley   if (depth < 0) PetscFunctionReturn(0);
4809566063dSJacob Faibussowitsch   PetscCall(DMPlexGetMaxSizes(dm, &maxConeSize, &maxSupportSize));
4819566063dSJacob Faibussowitsch   PetscCall(DMPlexGetMaxSizes(dmNew, &maxConeSizeNew, &maxSupportSizeNew));
4829566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(PetscMax(PetscMax(maxConeSize, maxSupportSize), PetscMax(maxConeSizeNew, maxSupportSizeNew)),&newpoints));
483cd0c2139SMatthew G Knepley   /* Step 5: Set cones and supports */
4849566063dSJacob Faibussowitsch   PetscCall(DMPlexGetChart(dm, &pStart, &pEnd));
485cd0c2139SMatthew G Knepley   for (p = pStart; p < pEnd; ++p) {
486cd0c2139SMatthew G Knepley     const PetscInt *points = NULL, *orientations = NULL;
4872582d50cSToby Isaac     PetscInt        size,sizeNew, i, newp = DMPlexShiftPoint_Internal(p, depth, depthShift);
488cd0c2139SMatthew G Knepley 
4899566063dSJacob Faibussowitsch     PetscCall(DMPlexGetConeSize(dm, p, &size));
4909566063dSJacob Faibussowitsch     PetscCall(DMPlexGetCone(dm, p, &points));
4919566063dSJacob Faibussowitsch     PetscCall(DMPlexGetConeOrientation(dm, p, &orientations));
492cd0c2139SMatthew G Knepley     for (i = 0; i < size; ++i) {
4932582d50cSToby Isaac       newpoints[i] = DMPlexShiftPoint_Internal(points[i], depth, depthShift);
494cd0c2139SMatthew G Knepley     }
4959566063dSJacob Faibussowitsch     PetscCall(DMPlexSetCone(dmNew, newp, newpoints));
4969566063dSJacob Faibussowitsch     PetscCall(DMPlexSetConeOrientation(dmNew, newp, orientations));
4979566063dSJacob Faibussowitsch     PetscCall(DMPlexGetSupportSize(dm, p, &size));
4989566063dSJacob Faibussowitsch     PetscCall(DMPlexGetSupportSize(dmNew, newp, &sizeNew));
4999566063dSJacob Faibussowitsch     PetscCall(DMPlexGetSupport(dm, p, &points));
500cd0c2139SMatthew G Knepley     for (i = 0; i < size; ++i) {
5012582d50cSToby Isaac       newpoints[i] = DMPlexShiftPoint_Internal(points[i], depth, depthShift);
502cd0c2139SMatthew G Knepley     }
503dcbb62e8SMatthew G. Knepley     for (i = size; i < sizeNew; ++i) newpoints[i] = 0;
5049566063dSJacob Faibussowitsch     PetscCall(DMPlexSetSupport(dmNew, newp, newpoints));
505cd0c2139SMatthew G Knepley   }
5069566063dSJacob Faibussowitsch   PetscCall(PetscFree(newpoints));
507cd0c2139SMatthew G Knepley   PetscFunctionReturn(0);
508cd0c2139SMatthew G Knepley }
509cd0c2139SMatthew G Knepley 
510cd0c2139SMatthew G Knepley static PetscErrorCode DMPlexShiftCoordinates_Internal(DM dm, PetscInt depthShift[], DM dmNew)
511cd0c2139SMatthew G Knepley {
512cd0c2139SMatthew G Knepley   PetscSection   coordSection, newCoordSection;
513cd0c2139SMatthew G Knepley   Vec            coordinates, newCoordinates;
514cd0c2139SMatthew G Knepley   PetscScalar   *coords, *newCoords;
515f2b8cce1SMatthew G. Knepley   PetscInt       coordSize, sStart, sEnd;
516f2b8cce1SMatthew G. Knepley   PetscInt       dim, depth = 0, cStart, cEnd, cStartNew, cEndNew, c, vStart, vEnd, vStartNew, vEndNew, v;
517f2b8cce1SMatthew G. Knepley   PetscBool      hasCells;
518cd0c2139SMatthew G Knepley 
519cd0c2139SMatthew G Knepley   PetscFunctionBegin;
5209566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateDim(dm, &dim));
5219566063dSJacob Faibussowitsch   PetscCall(DMSetCoordinateDim(dmNew, dim));
5229566063dSJacob Faibussowitsch   PetscCall(DMPlexGetDepth(dm, &depth));
523cd0c2139SMatthew G Knepley   /* Step 8: Convert coordinates */
5249566063dSJacob Faibussowitsch   PetscCall(DMPlexGetDepthStratum(dm, 0, &vStart, &vEnd));
5259566063dSJacob Faibussowitsch   PetscCall(DMPlexGetHeightStratum(dm, 0, &cStart, &cEnd));
5269566063dSJacob Faibussowitsch   PetscCall(DMPlexGetDepthStratum(dmNew, 0, &vStartNew, &vEndNew));
5279566063dSJacob Faibussowitsch   PetscCall(DMPlexGetHeightStratum(dmNew, 0, &cStartNew, &cEndNew));
5289566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateSection(dm, &coordSection));
5299566063dSJacob Faibussowitsch   PetscCall(PetscSectionCreate(PetscObjectComm((PetscObject)dm), &newCoordSection));
5309566063dSJacob Faibussowitsch   PetscCall(PetscSectionSetNumFields(newCoordSection, 1));
5319566063dSJacob Faibussowitsch   PetscCall(PetscSectionSetFieldComponents(newCoordSection, 0, dim));
5329566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetChart(coordSection, &sStart, &sEnd));
533f2b8cce1SMatthew G. Knepley   hasCells = sStart == cStart ? PETSC_TRUE : PETSC_FALSE;
5349566063dSJacob Faibussowitsch   PetscCall(PetscSectionSetChart(newCoordSection, hasCells ? cStartNew : vStartNew, vEndNew));
535f2b8cce1SMatthew G. Knepley   if (hasCells) {
536f2b8cce1SMatthew G. Knepley     for (c = cStart; c < cEnd; ++c) {
537f2b8cce1SMatthew G. Knepley       PetscInt cNew = DMPlexShiftPoint_Internal(c, depth, depthShift), dof;
538f2b8cce1SMatthew G. Knepley 
5399566063dSJacob Faibussowitsch       PetscCall(PetscSectionGetDof(coordSection, c, &dof));
5409566063dSJacob Faibussowitsch       PetscCall(PetscSectionSetDof(newCoordSection, cNew, dof));
5419566063dSJacob Faibussowitsch       PetscCall(PetscSectionSetFieldDof(newCoordSection, cNew, 0, dof));
542f2b8cce1SMatthew G. Knepley     }
543f2b8cce1SMatthew G. Knepley   }
544cd0c2139SMatthew G Knepley   for (v = vStartNew; v < vEndNew; ++v) {
5459566063dSJacob Faibussowitsch     PetscCall(PetscSectionSetDof(newCoordSection, v, dim));
5469566063dSJacob Faibussowitsch     PetscCall(PetscSectionSetFieldDof(newCoordSection, v, 0, dim));
547cd0c2139SMatthew G Knepley   }
5489566063dSJacob Faibussowitsch   PetscCall(PetscSectionSetUp(newCoordSection));
5499566063dSJacob Faibussowitsch   PetscCall(DMSetCoordinateSection(dmNew, PETSC_DETERMINE, newCoordSection));
5509566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetStorageSize(newCoordSection, &coordSize));
5519566063dSJacob Faibussowitsch   PetscCall(VecCreate(PETSC_COMM_SELF, &newCoordinates));
5529566063dSJacob Faibussowitsch   PetscCall(PetscObjectSetName((PetscObject) newCoordinates, "coordinates"));
5539566063dSJacob Faibussowitsch   PetscCall(VecSetSizes(newCoordinates, coordSize, PETSC_DETERMINE));
5549566063dSJacob Faibussowitsch   PetscCall(VecSetBlockSize(newCoordinates, dim));
5559566063dSJacob Faibussowitsch   PetscCall(VecSetType(newCoordinates,VECSTANDARD));
5569566063dSJacob Faibussowitsch   PetscCall(DMSetCoordinatesLocal(dmNew, newCoordinates));
5579566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinatesLocal(dm, &coordinates));
5589566063dSJacob Faibussowitsch   PetscCall(VecGetArray(coordinates, &coords));
5599566063dSJacob Faibussowitsch   PetscCall(VecGetArray(newCoordinates, &newCoords));
560f2b8cce1SMatthew G. Knepley   if (hasCells) {
561f2b8cce1SMatthew G. Knepley     for (c = cStart; c < cEnd; ++c) {
562f2b8cce1SMatthew G. Knepley       PetscInt cNew = DMPlexShiftPoint_Internal(c, depth, depthShift), dof, off, noff, d;
563f2b8cce1SMatthew G. Knepley 
5649566063dSJacob Faibussowitsch       PetscCall(PetscSectionGetDof(coordSection, c, &dof));
5659566063dSJacob Faibussowitsch       PetscCall(PetscSectionGetOffset(coordSection, c, &off));
5669566063dSJacob Faibussowitsch       PetscCall(PetscSectionGetOffset(newCoordSection, cNew, &noff));
567f2b8cce1SMatthew G. Knepley       for (d = 0; d < dof; ++d) newCoords[noff+d] = coords[off+d];
568f2b8cce1SMatthew G. Knepley     }
569f2b8cce1SMatthew G. Knepley   }
570cd0c2139SMatthew G Knepley   for (v = vStart; v < vEnd; ++v) {
571cd0c2139SMatthew G Knepley     PetscInt dof, off, noff, d;
572cd0c2139SMatthew G Knepley 
5739566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetDof(coordSection, v, &dof));
5749566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetOffset(coordSection, v, &off));
5759566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetOffset(newCoordSection, DMPlexShiftPoint_Internal(v, depth, depthShift), &noff));
576f2b8cce1SMatthew G. Knepley     for (d = 0; d < dof; ++d) newCoords[noff+d] = coords[off+d];
577cd0c2139SMatthew G Knepley   }
5789566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(coordinates, &coords));
5799566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(newCoordinates, &newCoords));
5809566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&newCoordinates));
5819566063dSJacob Faibussowitsch   PetscCall(PetscSectionDestroy(&newCoordSection));
582cd0c2139SMatthew G Knepley   PetscFunctionReturn(0);
583cd0c2139SMatthew G Knepley }
584cd0c2139SMatthew G Knepley 
5850e33faafSMatthew G. Knepley static PetscErrorCode DMPlexShiftSF_Single(DM dm, PetscInt depthShift[], PetscSF sf, PetscSF sfNew)
586cd0c2139SMatthew G Knepley {
587cd0c2139SMatthew G Knepley   const PetscSFNode *remotePoints;
588cd0c2139SMatthew G Knepley   PetscSFNode       *gremotePoints;
589cd0c2139SMatthew G Knepley   const PetscInt    *localPoints;
590cd0c2139SMatthew G Knepley   PetscInt          *glocalPoints, *newLocation, *newRemoteLocation;
5910e33faafSMatthew G. Knepley   PetscInt           numRoots, numLeaves, l, pStart, pEnd, depth = 0, totShift = 0;
592cd0c2139SMatthew G Knepley 
593cd0c2139SMatthew G Knepley   PetscFunctionBegin;
5949566063dSJacob Faibussowitsch   PetscCall(DMPlexGetDepth(dm, &depth));
5959566063dSJacob Faibussowitsch   PetscCall(DMPlexGetChart(dm, &pStart, &pEnd));
5969566063dSJacob Faibussowitsch   PetscCall(PetscSFGetGraph(sf, &numRoots, &numLeaves, &localPoints, &remotePoints));
5976e21efdcSToby Isaac   totShift = DMPlexShiftPoint_Internal(pEnd, depth, depthShift) - pEnd;
598cd0c2139SMatthew G Knepley   if (numRoots >= 0) {
5999566063dSJacob Faibussowitsch     PetscCall(PetscMalloc2(numRoots, &newLocation, pEnd-pStart, &newRemoteLocation));
6000e33faafSMatthew G. Knepley     for (l = 0; l < numRoots; ++l) newLocation[l] = DMPlexShiftPoint_Internal(l, depth, depthShift);
6019566063dSJacob Faibussowitsch     PetscCall(PetscSFBcastBegin(sf, MPIU_INT, newLocation, newRemoteLocation, MPI_REPLACE));
6029566063dSJacob Faibussowitsch     PetscCall(PetscSFBcastEnd(sf, MPIU_INT, newLocation, newRemoteLocation, MPI_REPLACE));
6039566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(numLeaves, &glocalPoints));
6049566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(numLeaves, &gremotePoints));
605cd0c2139SMatthew G Knepley     for (l = 0; l < numLeaves; ++l) {
6062582d50cSToby Isaac       glocalPoints[l]        = DMPlexShiftPoint_Internal(localPoints[l], depth, depthShift);
607cd0c2139SMatthew G Knepley       gremotePoints[l].rank  = remotePoints[l].rank;
608cd0c2139SMatthew G Knepley       gremotePoints[l].index = newRemoteLocation[localPoints[l]];
609cd0c2139SMatthew G Knepley     }
6109566063dSJacob Faibussowitsch     PetscCall(PetscFree2(newLocation, newRemoteLocation));
6119566063dSJacob Faibussowitsch     PetscCall(PetscSFSetGraph(sfNew, numRoots + totShift, numLeaves, glocalPoints, PETSC_OWN_POINTER, gremotePoints, PETSC_OWN_POINTER));
6120e33faafSMatthew G. Knepley   }
6130e33faafSMatthew G. Knepley   PetscFunctionReturn(0);
6140e33faafSMatthew G. Knepley }
6150e33faafSMatthew G. Knepley 
6160e33faafSMatthew G. Knepley static PetscErrorCode DMPlexShiftSF_Internal(DM dm, PetscInt depthShift[], DM dmNew)
6170e33faafSMatthew G. Knepley {
6180e33faafSMatthew G. Knepley   PetscSF        sfPoint, sfPointNew;
6190e33faafSMatthew G. Knepley   PetscBool      useNatural;
6200e33faafSMatthew G. Knepley 
6210e33faafSMatthew G. Knepley   PetscFunctionBegin;
6220e33faafSMatthew G. Knepley   /* Step 9: Convert pointSF */
6239566063dSJacob Faibussowitsch   PetscCall(DMGetPointSF(dm, &sfPoint));
6249566063dSJacob Faibussowitsch   PetscCall(DMGetPointSF(dmNew, &sfPointNew));
6259566063dSJacob Faibussowitsch   PetscCall(DMPlexShiftSF_Single(dm, depthShift, sfPoint, sfPointNew));
6260e33faafSMatthew G. Knepley   /* Step 9b: Convert naturalSF */
6279566063dSJacob Faibussowitsch   PetscCall(DMGetUseNatural(dm, &useNatural));
6280e33faafSMatthew G. Knepley   if (useNatural) {
6290e33faafSMatthew G. Knepley     PetscSF sfNat, sfNatNew;
6300e33faafSMatthew G. Knepley 
6319566063dSJacob Faibussowitsch     PetscCall(DMSetUseNatural(dmNew, useNatural));
6329566063dSJacob Faibussowitsch     PetscCall(DMGetNaturalSF(dm, &sfNat));
6339566063dSJacob Faibussowitsch     PetscCall(DMGetNaturalSF(dmNew, &sfNatNew));
6349566063dSJacob Faibussowitsch     PetscCall(DMPlexShiftSF_Single(dm, depthShift, sfNat, sfNatNew));
635cd0c2139SMatthew G Knepley   }
636cd0c2139SMatthew G Knepley   PetscFunctionReturn(0);
637cd0c2139SMatthew G Knepley }
638cd0c2139SMatthew G Knepley 
639cd0c2139SMatthew G Knepley static PetscErrorCode DMPlexShiftLabels_Internal(DM dm, PetscInt depthShift[], DM dmNew)
640cd0c2139SMatthew G Knepley {
641d56405f8SMatthew G. Knepley   PetscInt           depth = 0, numLabels, l;
642cd0c2139SMatthew G Knepley 
643cd0c2139SMatthew G Knepley   PetscFunctionBegin;
6449566063dSJacob Faibussowitsch   PetscCall(DMPlexGetDepth(dm, &depth));
645cd0c2139SMatthew G Knepley   /* Step 10: Convert labels */
6469566063dSJacob Faibussowitsch   PetscCall(DMGetNumLabels(dm, &numLabels));
647cd0c2139SMatthew G Knepley   for (l = 0; l < numLabels; ++l) {
648cd0c2139SMatthew G Knepley     DMLabel         label, newlabel;
649cd0c2139SMatthew G Knepley     const char     *lname;
650fa8e8ae5SToby Isaac     PetscBool       isDepth, isDim;
651cd0c2139SMatthew G Knepley     IS              valueIS;
652cd0c2139SMatthew G Knepley     const PetscInt *values;
653cd0c2139SMatthew G Knepley     PetscInt        numValues, val;
654cd0c2139SMatthew G Knepley 
6559566063dSJacob Faibussowitsch     PetscCall(DMGetLabelName(dm, l, &lname));
6569566063dSJacob Faibussowitsch     PetscCall(PetscStrcmp(lname, "depth", &isDepth));
657cd0c2139SMatthew G Knepley     if (isDepth) continue;
6589566063dSJacob Faibussowitsch     PetscCall(PetscStrcmp(lname, "dim", &isDim));
659fa8e8ae5SToby Isaac     if (isDim) continue;
6609566063dSJacob Faibussowitsch     PetscCall(DMCreateLabel(dmNew, lname));
6619566063dSJacob Faibussowitsch     PetscCall(DMGetLabel(dm, lname, &label));
6629566063dSJacob Faibussowitsch     PetscCall(DMGetLabel(dmNew, lname, &newlabel));
6639566063dSJacob Faibussowitsch     PetscCall(DMLabelGetDefaultValue(label,&val));
6649566063dSJacob Faibussowitsch     PetscCall(DMLabelSetDefaultValue(newlabel,val));
6659566063dSJacob Faibussowitsch     PetscCall(DMLabelGetValueIS(label, &valueIS));
6669566063dSJacob Faibussowitsch     PetscCall(ISGetLocalSize(valueIS, &numValues));
6679566063dSJacob Faibussowitsch     PetscCall(ISGetIndices(valueIS, &values));
668cd0c2139SMatthew G Knepley     for (val = 0; val < numValues; ++val) {
669cd0c2139SMatthew G Knepley       IS              pointIS;
670cd0c2139SMatthew G Knepley       const PetscInt *points;
671cd0c2139SMatthew G Knepley       PetscInt        numPoints, p;
672cd0c2139SMatthew G Knepley 
6739566063dSJacob Faibussowitsch       PetscCall(DMLabelGetStratumIS(label, values[val], &pointIS));
6749566063dSJacob Faibussowitsch       PetscCall(ISGetLocalSize(pointIS, &numPoints));
6759566063dSJacob Faibussowitsch       PetscCall(ISGetIndices(pointIS, &points));
676cd0c2139SMatthew G Knepley       for (p = 0; p < numPoints; ++p) {
6772582d50cSToby Isaac         const PetscInt newpoint = DMPlexShiftPoint_Internal(points[p], depth, depthShift);
678cd0c2139SMatthew G Knepley 
6799566063dSJacob Faibussowitsch         PetscCall(DMLabelSetValue(newlabel, newpoint, values[val]));
680cd0c2139SMatthew G Knepley       }
6819566063dSJacob Faibussowitsch       PetscCall(ISRestoreIndices(pointIS, &points));
6829566063dSJacob Faibussowitsch       PetscCall(ISDestroy(&pointIS));
683cd0c2139SMatthew G Knepley     }
6849566063dSJacob Faibussowitsch     PetscCall(ISRestoreIndices(valueIS, &values));
6859566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&valueIS));
686cd0c2139SMatthew G Knepley   }
687d56405f8SMatthew G. Knepley   PetscFunctionReturn(0);
688d56405f8SMatthew G. Knepley }
689d56405f8SMatthew G. Knepley 
690d56405f8SMatthew G. Knepley static PetscErrorCode DMPlexCreateVTKLabel_Internal(DM dm, PetscBool createGhostLabel, DM dmNew)
691d56405f8SMatthew G. Knepley {
692d56405f8SMatthew G. Knepley   PetscSF            sfPoint;
693d56405f8SMatthew G. Knepley   DMLabel            vtkLabel, ghostLabel = NULL;
694d56405f8SMatthew G. Knepley   const PetscSFNode *leafRemote;
695d56405f8SMatthew G. Knepley   const PetscInt    *leafLocal;
696d56405f8SMatthew G. Knepley   PetscInt           cellHeight, cStart, cEnd, c, fStart, fEnd, f, numLeaves, l;
697d56405f8SMatthew G. Knepley   PetscMPIInt        rank;
698d56405f8SMatthew G. Knepley 
699d56405f8SMatthew G. Knepley   PetscFunctionBegin;
700cd0c2139SMatthew G Knepley    /* Step 11: Make label for output (vtk) and to mark ghost points (ghost) */
7019566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)dm), &rank));
7029566063dSJacob Faibussowitsch   PetscCall(DMGetPointSF(dm, &sfPoint));
7039566063dSJacob Faibussowitsch   PetscCall(DMPlexGetVTKCellHeight(dmNew, &cellHeight));
7049566063dSJacob Faibussowitsch   PetscCall(DMPlexGetHeightStratum(dm, cellHeight, &cStart, &cEnd));
7059566063dSJacob Faibussowitsch   PetscCall(PetscSFGetGraph(sfPoint, NULL, &numLeaves, &leafLocal, &leafRemote));
7069566063dSJacob Faibussowitsch   PetscCall(DMCreateLabel(dmNew, "vtk"));
7079566063dSJacob Faibussowitsch   PetscCall(DMGetLabel(dmNew, "vtk", &vtkLabel));
708d56405f8SMatthew G. Knepley   if (createGhostLabel) {
7099566063dSJacob Faibussowitsch     PetscCall(DMCreateLabel(dmNew, "ghost"));
7109566063dSJacob Faibussowitsch     PetscCall(DMGetLabel(dmNew, "ghost", &ghostLabel));
711d56405f8SMatthew G. Knepley   }
712cd0c2139SMatthew G Knepley   for (l = 0, c = cStart; l < numLeaves && c < cEnd; ++l, ++c) {
713cd0c2139SMatthew G Knepley     for (; c < leafLocal[l] && c < cEnd; ++c) {
7149566063dSJacob Faibussowitsch       PetscCall(DMLabelSetValue(vtkLabel, c, 1));
715cd0c2139SMatthew G Knepley     }
716cd0c2139SMatthew G Knepley     if (leafLocal[l] >= cEnd) break;
717cd0c2139SMatthew G Knepley     if (leafRemote[l].rank == rank) {
7189566063dSJacob Faibussowitsch       PetscCall(DMLabelSetValue(vtkLabel, c, 1));
719d56405f8SMatthew G. Knepley     } else if (ghostLabel) {
7209566063dSJacob Faibussowitsch       PetscCall(DMLabelSetValue(ghostLabel, c, 2));
721cd0c2139SMatthew G Knepley     }
722cd0c2139SMatthew G Knepley   }
723cd0c2139SMatthew G Knepley   for (; c < cEnd; ++c) {
7249566063dSJacob Faibussowitsch     PetscCall(DMLabelSetValue(vtkLabel, c, 1));
725cd0c2139SMatthew G Knepley   }
726d56405f8SMatthew G. Knepley   if (ghostLabel) {
7279566063dSJacob Faibussowitsch     PetscCall(DMPlexGetHeightStratum(dmNew, 1, &fStart, &fEnd));
728cd0c2139SMatthew G Knepley     for (f = fStart; f < fEnd; ++f) {
729cd0c2139SMatthew G Knepley       PetscInt numCells;
730cd0c2139SMatthew G Knepley 
7319566063dSJacob Faibussowitsch       PetscCall(DMPlexGetSupportSize(dmNew, f, &numCells));
732cd0c2139SMatthew G Knepley       if (numCells < 2) {
7339566063dSJacob Faibussowitsch         PetscCall(DMLabelSetValue(ghostLabel, f, 1));
734cd0c2139SMatthew G Knepley       } else {
735cd0c2139SMatthew G Knepley         const PetscInt *cells = NULL;
736cd0c2139SMatthew G Knepley         PetscInt        vA, vB;
737cd0c2139SMatthew G Knepley 
7389566063dSJacob Faibussowitsch         PetscCall(DMPlexGetSupport(dmNew, f, &cells));
7399566063dSJacob Faibussowitsch         PetscCall(DMLabelGetValue(vtkLabel, cells[0], &vA));
7409566063dSJacob Faibussowitsch         PetscCall(DMLabelGetValue(vtkLabel, cells[1], &vB));
7419566063dSJacob Faibussowitsch         if (vA != 1 && vB != 1) PetscCall(DMLabelSetValue(ghostLabel, f, 1));
742cd0c2139SMatthew G Knepley       }
743cd0c2139SMatthew G Knepley     }
744d56405f8SMatthew G. Knepley   }
745cd0c2139SMatthew G Knepley   PetscFunctionReturn(0);
746cd0c2139SMatthew G Knepley }
747cd0c2139SMatthew G Knepley 
748ca04dac2SToby Isaac static PetscErrorCode DMPlexShiftTree_Internal(DM dm, PetscInt depthShift[], DM dmNew)
749ca04dac2SToby Isaac {
750ca04dac2SToby Isaac   DM             refTree;
751ca04dac2SToby Isaac   PetscSection   pSec;
752ca04dac2SToby Isaac   PetscInt       *parents, *childIDs;
753ca04dac2SToby Isaac 
754ca04dac2SToby Isaac   PetscFunctionBegin;
7559566063dSJacob Faibussowitsch   PetscCall(DMPlexGetReferenceTree(dm,&refTree));
7569566063dSJacob Faibussowitsch   PetscCall(DMPlexSetReferenceTree(dmNew,refTree));
7579566063dSJacob Faibussowitsch   PetscCall(DMPlexGetTree(dm,&pSec,&parents,&childIDs,NULL,NULL));
758ca04dac2SToby Isaac   if (pSec) {
7592582d50cSToby Isaac     PetscInt p, pStart, pEnd, *parentsShifted, pStartShifted, pEndShifted, depth;
760fb4630b5SToby Isaac     PetscInt *childIDsShifted;
761ca04dac2SToby Isaac     PetscSection pSecShifted;
762ca04dac2SToby Isaac 
7639566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetChart(pSec,&pStart,&pEnd));
7649566063dSJacob Faibussowitsch     PetscCall(DMPlexGetDepth(dm,&depth));
7652582d50cSToby Isaac     pStartShifted = DMPlexShiftPoint_Internal(pStart,depth,depthShift);
7662582d50cSToby Isaac     pEndShifted   = DMPlexShiftPoint_Internal(pEnd,depth,depthShift);
7679566063dSJacob Faibussowitsch     PetscCall(PetscMalloc2(pEndShifted - pStartShifted,&parentsShifted,pEndShifted-pStartShifted,&childIDsShifted));
7689566063dSJacob Faibussowitsch     PetscCall(PetscSectionCreate(PetscObjectComm((PetscObject)dmNew),&pSecShifted));
7699566063dSJacob Faibussowitsch     PetscCall(PetscSectionSetChart(pSecShifted,pStartShifted,pEndShifted));
770ca04dac2SToby Isaac     for (p = pStartShifted; p < pEndShifted; p++) {
771fb4630b5SToby Isaac       /* start off assuming no children */
7729566063dSJacob Faibussowitsch       PetscCall(PetscSectionSetDof(pSecShifted,p,0));
773fb4630b5SToby Isaac     }
774fb4630b5SToby Isaac     for (p = pStart; p < pEnd; p++) {
775fb4630b5SToby Isaac       PetscInt dof;
776fb4630b5SToby Isaac       PetscInt pNew = DMPlexShiftPoint_Internal(p,depth,depthShift);
777ca04dac2SToby Isaac 
7789566063dSJacob Faibussowitsch       PetscCall(PetscSectionGetDof(pSec,p,&dof));
7799566063dSJacob Faibussowitsch       PetscCall(PetscSectionSetDof(pSecShifted,pNew,dof));
780ca04dac2SToby Isaac     }
7819566063dSJacob Faibussowitsch     PetscCall(PetscSectionSetUp(pSecShifted));
782fb4630b5SToby Isaac     for (p = pStart; p < pEnd; p++) {
783fb4630b5SToby Isaac       PetscInt dof;
784fb4630b5SToby Isaac       PetscInt pNew = DMPlexShiftPoint_Internal(p,depth,depthShift);
785fb4630b5SToby Isaac 
7869566063dSJacob Faibussowitsch       PetscCall(PetscSectionGetDof(pSec,p,&dof));
787fb4630b5SToby Isaac       if (dof) {
788fb4630b5SToby Isaac         PetscInt off, offNew;
789fb4630b5SToby Isaac 
7909566063dSJacob Faibussowitsch         PetscCall(PetscSectionGetOffset(pSec,p,&off));
7919566063dSJacob Faibussowitsch         PetscCall(PetscSectionGetOffset(pSecShifted,pNew,&offNew));
792fb4630b5SToby Isaac         parentsShifted[offNew] = DMPlexShiftPoint_Internal(parents[off],depth,depthShift);
793fb4630b5SToby Isaac         childIDsShifted[offNew] = childIDs[off];
794fb4630b5SToby Isaac       }
795fb4630b5SToby Isaac     }
7969566063dSJacob Faibussowitsch     PetscCall(DMPlexSetTree(dmNew,pSecShifted,parentsShifted,childIDsShifted));
7979566063dSJacob Faibussowitsch     PetscCall(PetscFree2(parentsShifted,childIDsShifted));
7989566063dSJacob Faibussowitsch     PetscCall(PetscSectionDestroy(&pSecShifted));
799ca04dac2SToby Isaac   }
800ca04dac2SToby Isaac   PetscFunctionReturn(0);
801ca04dac2SToby Isaac }
802ca04dac2SToby Isaac 
803cd0c2139SMatthew G Knepley static PetscErrorCode DMPlexConstructGhostCells_Internal(DM dm, DMLabel label, PetscInt *numGhostCells, DM gdm)
804cd0c2139SMatthew G Knepley {
805da97024aSMatthew G. Knepley   PetscSF               sf;
806cd0c2139SMatthew G Knepley   IS                    valueIS;
807da97024aSMatthew G. Knepley   const PetscInt       *values, *leaves;
808cd0c2139SMatthew G Knepley   PetscInt             *depthShift;
8092582d50cSToby Isaac   PetscInt              d, depth = 0, nleaves, loc, Ng, numFS, fs, fStart, fEnd, ghostCell, cEnd, c;
81090b157c4SStefano Zampini   PetscBool             isper;
81190b157c4SStefano Zampini   const PetscReal      *maxCell, *L;
81290b157c4SStefano Zampini   const DMBoundaryType *bd;
813cd0c2139SMatthew G Knepley 
814cd0c2139SMatthew G Knepley   PetscFunctionBegin;
8159566063dSJacob Faibussowitsch   PetscCall(DMGetPointSF(dm, &sf));
8169566063dSJacob Faibussowitsch   PetscCall(PetscSFGetGraph(sf, NULL, &nleaves, &leaves, NULL));
817da97024aSMatthew G. Knepley   nleaves = PetscMax(0, nleaves);
8189566063dSJacob Faibussowitsch   PetscCall(DMPlexGetHeightStratum(dm, 1, &fStart, &fEnd));
819cd0c2139SMatthew G Knepley   /* Count ghost cells */
8209566063dSJacob Faibussowitsch   PetscCall(DMLabelGetValueIS(label, &valueIS));
8219566063dSJacob Faibussowitsch   PetscCall(ISGetLocalSize(valueIS, &numFS));
8229566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(valueIS, &values));
8234a6cfa73SMatthew G. Knepley   Ng   = 0;
824cd0c2139SMatthew G Knepley   for (fs = 0; fs < numFS; ++fs) {
82546c796b9SMatthew G. Knepley     IS              faceIS;
82646c796b9SMatthew G. Knepley     const PetscInt *faces;
82746c796b9SMatthew G. Knepley     PetscInt        numFaces, f, numBdFaces = 0;
828cd0c2139SMatthew G Knepley 
8299566063dSJacob Faibussowitsch     PetscCall(DMLabelGetStratumIS(label, values[fs], &faceIS));
8309566063dSJacob Faibussowitsch     PetscCall(ISGetLocalSize(faceIS, &numFaces));
8319566063dSJacob Faibussowitsch     PetscCall(ISGetIndices(faceIS, &faces));
83246c796b9SMatthew G. Knepley     for (f = 0; f < numFaces; ++f) {
833ca04dac2SToby Isaac       PetscInt numChildren;
834ca04dac2SToby Isaac 
8359566063dSJacob Faibussowitsch       PetscCall(PetscFindInt(faces[f], nleaves, leaves, &loc));
8369566063dSJacob Faibussowitsch       PetscCall(DMPlexGetTreeChildren(dm,faces[f],&numChildren,NULL));
837ca04dac2SToby Isaac       /* non-local and ancestors points don't get to register ghosts */
838ca04dac2SToby Isaac       if (loc >= 0 || numChildren) continue;
83946c796b9SMatthew G. Knepley       if ((faces[f] >= fStart) && (faces[f] < fEnd)) ++numBdFaces;
84046c796b9SMatthew G. Knepley     }
8414a6cfa73SMatthew G. Knepley     Ng += numBdFaces;
8429566063dSJacob Faibussowitsch     PetscCall(ISRestoreIndices(faceIS, &faces));
8439566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&faceIS));
844cd0c2139SMatthew G Knepley   }
8459566063dSJacob Faibussowitsch   PetscCall(DMPlexGetDepth(dm, &depth));
8469566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(2*(depth+1), &depthShift));
8472582d50cSToby Isaac   for (d = 0; d <= depth; d++) {
84859eef20bSToby Isaac     PetscInt dEnd;
8492582d50cSToby Isaac 
8509566063dSJacob Faibussowitsch     PetscCall(DMPlexGetDepthStratum(dm,d,NULL,&dEnd));
85159eef20bSToby Isaac     depthShift[2*d]   = dEnd;
8522582d50cSToby Isaac     depthShift[2*d+1] = 0;
8532582d50cSToby Isaac   }
8542582d50cSToby Isaac   if (depth >= 0) depthShift[2*depth+1] = Ng;
8559566063dSJacob Faibussowitsch   PetscCall(DMPlexShiftPointSetUp_Internal(depth,depthShift));
8569566063dSJacob Faibussowitsch   PetscCall(DMPlexShiftSizes_Internal(dm, depthShift, gdm));
857cd0c2139SMatthew G Knepley   /* Step 3: Set cone/support sizes for new points */
8589566063dSJacob Faibussowitsch   PetscCall(DMPlexGetHeightStratum(dm, 0, NULL, &cEnd));
8594a6cfa73SMatthew G. Knepley   for (c = cEnd; c < cEnd + Ng; ++c) {
8609566063dSJacob Faibussowitsch     PetscCall(DMPlexSetConeSize(gdm, c, 1));
861cd0c2139SMatthew G Knepley   }
862cd0c2139SMatthew G Knepley   for (fs = 0; fs < numFS; ++fs) {
863cd0c2139SMatthew G Knepley     IS              faceIS;
864cd0c2139SMatthew G Knepley     const PetscInt *faces;
865cd0c2139SMatthew G Knepley     PetscInt        numFaces, f;
866cd0c2139SMatthew G Knepley 
8679566063dSJacob Faibussowitsch     PetscCall(DMLabelGetStratumIS(label, values[fs], &faceIS));
8689566063dSJacob Faibussowitsch     PetscCall(ISGetLocalSize(faceIS, &numFaces));
8699566063dSJacob Faibussowitsch     PetscCall(ISGetIndices(faceIS, &faces));
870cd0c2139SMatthew G Knepley     for (f = 0; f < numFaces; ++f) {
871ca04dac2SToby Isaac       PetscInt size, numChildren;
872cd0c2139SMatthew G Knepley 
8739566063dSJacob Faibussowitsch       PetscCall(PetscFindInt(faces[f], nleaves, leaves, &loc));
8749566063dSJacob Faibussowitsch       PetscCall(DMPlexGetTreeChildren(dm,faces[f],&numChildren,NULL));
875ca04dac2SToby Isaac       if (loc >= 0 || numChildren) continue;
87646c796b9SMatthew G. Knepley       if ((faces[f] < fStart) || (faces[f] >= fEnd)) continue;
8779566063dSJacob Faibussowitsch       PetscCall(DMPlexGetSupportSize(dm, faces[f], &size));
87863a3b9bcSJacob Faibussowitsch       PetscCheck(size == 1,PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "DM has boundary face %" PetscInt_FMT " with %" PetscInt_FMT " support cells", faces[f], size);
8799566063dSJacob Faibussowitsch       PetscCall(DMPlexSetSupportSize(gdm, faces[f] + Ng, 2));
880cd0c2139SMatthew G Knepley     }
8819566063dSJacob Faibussowitsch     PetscCall(ISRestoreIndices(faceIS, &faces));
8829566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&faceIS));
883cd0c2139SMatthew G Knepley   }
884cd0c2139SMatthew G Knepley   /* Step 4: Setup ghosted DM */
8859566063dSJacob Faibussowitsch   PetscCall(DMSetUp(gdm));
8869566063dSJacob Faibussowitsch   PetscCall(DMPlexShiftPoints_Internal(dm, depthShift, gdm));
887cd0c2139SMatthew G Knepley   /* Step 6: Set cones and supports for new points */
888cd0c2139SMatthew G Knepley   ghostCell = cEnd;
889cd0c2139SMatthew G Knepley   for (fs = 0; fs < numFS; ++fs) {
890cd0c2139SMatthew G Knepley     IS              faceIS;
891cd0c2139SMatthew G Knepley     const PetscInt *faces;
892cd0c2139SMatthew G Knepley     PetscInt        numFaces, f;
893cd0c2139SMatthew G Knepley 
8949566063dSJacob Faibussowitsch     PetscCall(DMLabelGetStratumIS(label, values[fs], &faceIS));
8959566063dSJacob Faibussowitsch     PetscCall(ISGetLocalSize(faceIS, &numFaces));
8969566063dSJacob Faibussowitsch     PetscCall(ISGetIndices(faceIS, &faces));
89746c796b9SMatthew G. Knepley     for (f = 0; f < numFaces; ++f) {
898ca04dac2SToby Isaac       PetscInt newFace = faces[f] + Ng, numChildren;
899cd0c2139SMatthew G Knepley 
9009566063dSJacob Faibussowitsch       PetscCall(PetscFindInt(faces[f], nleaves, leaves, &loc));
9019566063dSJacob Faibussowitsch       PetscCall(DMPlexGetTreeChildren(dm,faces[f],&numChildren,NULL));
902ca04dac2SToby Isaac       if (loc >= 0 || numChildren) continue;
90346c796b9SMatthew G. Knepley       if ((faces[f] < fStart) || (faces[f] >= fEnd)) continue;
9049566063dSJacob Faibussowitsch       PetscCall(DMPlexSetCone(gdm, ghostCell, &newFace));
9059566063dSJacob Faibussowitsch       PetscCall(DMPlexInsertSupport(gdm, newFace, 1, ghostCell));
90646c796b9SMatthew G. Knepley       ++ghostCell;
907cd0c2139SMatthew G Knepley     }
9089566063dSJacob Faibussowitsch     PetscCall(ISRestoreIndices(faceIS, &faces));
9099566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&faceIS));
910cd0c2139SMatthew G Knepley   }
9119566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(valueIS, &values));
9129566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&valueIS));
9139566063dSJacob Faibussowitsch   PetscCall(DMPlexShiftCoordinates_Internal(dm, depthShift, gdm));
9149566063dSJacob Faibussowitsch   PetscCall(DMPlexShiftSF_Internal(dm, depthShift, gdm));
9159566063dSJacob Faibussowitsch   PetscCall(DMPlexShiftLabels_Internal(dm, depthShift, gdm));
9169566063dSJacob Faibussowitsch   PetscCall(DMPlexCreateVTKLabel_Internal(dm, PETSC_TRUE, gdm));
9179566063dSJacob Faibussowitsch   PetscCall(DMPlexShiftTree_Internal(dm, depthShift, gdm));
9189566063dSJacob Faibussowitsch   PetscCall(PetscFree(depthShift));
919412e9a14SMatthew G. Knepley   for (c = cEnd; c < cEnd + Ng; ++c) {
9209566063dSJacob Faibussowitsch     PetscCall(DMPlexSetCellType(gdm, c, DM_POLYTOPE_FV_GHOST));
921412e9a14SMatthew G. Knepley   }
922966c7b3fSMatthew G. Knepley   /* Step 7: Periodicity */
9239566063dSJacob Faibussowitsch   PetscCall(DMGetPeriodicity(dm, &isper, &maxCell, &L, &bd));
9249566063dSJacob Faibussowitsch   PetscCall(DMSetPeriodicity(gdm, isper, maxCell,  L,  bd));
9254a6cfa73SMatthew G. Knepley   if (numGhostCells) *numGhostCells = Ng;
926cd0c2139SMatthew G Knepley   PetscFunctionReturn(0);
927cd0c2139SMatthew G Knepley }
928cd0c2139SMatthew G Knepley 
929cd0c2139SMatthew G Knepley /*@C
930cd0c2139SMatthew G Knepley   DMPlexConstructGhostCells - Construct ghost cells which connect to every boundary face
931cd0c2139SMatthew G Knepley 
932cd0c2139SMatthew G Knepley   Collective on dm
933cd0c2139SMatthew G Knepley 
934cd0c2139SMatthew G Knepley   Input Parameters:
935cd0c2139SMatthew G Knepley + dm - The original DM
936cd0c2139SMatthew G Knepley - labelName - The label specifying the boundary faces, or "Face Sets" if this is NULL
937cd0c2139SMatthew G Knepley 
938cd0c2139SMatthew G Knepley   Output Parameters:
939cd0c2139SMatthew G Knepley + numGhostCells - The number of ghost cells added to the DM
940cd0c2139SMatthew G Knepley - dmGhosted - The new DM
941cd0c2139SMatthew G Knepley 
942cd0c2139SMatthew G Knepley   Note: If no label exists of that name, one will be created marking all boundary faces
943cd0c2139SMatthew G Knepley 
944cd0c2139SMatthew G Knepley   Level: developer
945cd0c2139SMatthew G Knepley 
946db781477SPatrick Sanan .seealso: `DMCreate()`
94731266bc0SMatthew G. Knepley @*/
948cd0c2139SMatthew G Knepley PetscErrorCode DMPlexConstructGhostCells(DM dm, const char labelName[], PetscInt *numGhostCells, DM *dmGhosted)
949cd0c2139SMatthew G Knepley {
950cd0c2139SMatthew G Knepley   DM             gdm;
951cd0c2139SMatthew G Knepley   DMLabel        label;
952cd0c2139SMatthew G Knepley   const char    *name = labelName ? labelName : "Face Sets";
953412e9a14SMatthew G. Knepley   PetscInt       dim, Ng = 0;
954b0441da4SMatthew G. Knepley   PetscBool      useCone, useClosure;
955cd0c2139SMatthew G Knepley 
956cd0c2139SMatthew G Knepley   PetscFunctionBegin;
957cd0c2139SMatthew G Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
958dadcf809SJacob Faibussowitsch   if (numGhostCells) PetscValidIntPointer(numGhostCells, 3);
959cd0c2139SMatthew G Knepley   PetscValidPointer(dmGhosted, 4);
9609566063dSJacob Faibussowitsch   PetscCall(DMCreate(PetscObjectComm((PetscObject)dm), &gdm));
9619566063dSJacob Faibussowitsch   PetscCall(DMSetType(gdm, DMPLEX));
9629566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dm, &dim));
9639566063dSJacob Faibussowitsch   PetscCall(DMSetDimension(gdm, dim));
9649566063dSJacob Faibussowitsch   PetscCall(DMGetBasicAdjacency(dm, &useCone, &useClosure));
9659566063dSJacob Faibussowitsch   PetscCall(DMSetBasicAdjacency(gdm, useCone,  useClosure));
9669566063dSJacob Faibussowitsch   PetscCall(DMGetLabel(dm, name, &label));
967cd0c2139SMatthew G Knepley   if (!label) {
968cd0c2139SMatthew G Knepley     /* Get label for boundary faces */
9699566063dSJacob Faibussowitsch     PetscCall(DMCreateLabel(dm, name));
9709566063dSJacob Faibussowitsch     PetscCall(DMGetLabel(dm, name, &label));
9719566063dSJacob Faibussowitsch     PetscCall(DMPlexMarkBoundaryFaces(dm, 1, label));
972cd0c2139SMatthew G Knepley   }
9739566063dSJacob Faibussowitsch   PetscCall(DMPlexConstructGhostCells_Internal(dm, label, &Ng, gdm));
9749566063dSJacob Faibussowitsch   PetscCall(DMCopyDisc(dm, gdm));
9755de52c6dSVaclav Hapla   PetscCall(DMPlexCopy_Internal(dm, PETSC_TRUE, PETSC_TRUE, gdm));
976cad26855SMatthew G. Knepley   gdm->setfromoptionscalled = dm->setfromoptionscalled;
977d80ece95SMatthew G. Knepley   if (numGhostCells) *numGhostCells = Ng;
978cd0c2139SMatthew G Knepley   *dmGhosted = gdm;
979cd0c2139SMatthew G Knepley   PetscFunctionReturn(0);
980cd0c2139SMatthew G Knepley }
981cd0c2139SMatthew G Knepley 
982accc9626SMatthew G. Knepley static PetscErrorCode DivideCells_Private(DM dm, DMLabel label, DMPlexPointQueue queue)
983accc9626SMatthew G. Knepley {
984accc9626SMatthew G. Knepley   PetscInt dim, d, shift = 100, *pStart, *pEnd;
985accc9626SMatthew G. Knepley 
986accc9626SMatthew G. Knepley   PetscFunctionBegin;
987accc9626SMatthew G. Knepley   PetscCall(DMGetDimension(dm, &dim));
988accc9626SMatthew G. Knepley   PetscCall(PetscMalloc2(dim, &pStart, dim, &pEnd));
989accc9626SMatthew G. Knepley   for (d = 0; d < dim; ++d) {
990accc9626SMatthew G. Knepley     PetscCall(DMPlexGetDepthStratum(dm, d, &pStart[d], &pEnd[d]));
991accc9626SMatthew G. Knepley   }
992accc9626SMatthew G. Knepley   while (!DMPlexPointQueueEmpty(queue)) {
993accc9626SMatthew G. Knepley     PetscInt  cell    = -1;
994accc9626SMatthew G. Knepley     PetscInt *closure = NULL;
995accc9626SMatthew G. Knepley     PetscInt  closureSize, cl, cval;
996accc9626SMatthew G. Knepley 
997accc9626SMatthew G. Knepley     PetscCall(DMPlexPointQueueDequeue(queue, &cell));
998accc9626SMatthew G. Knepley     PetscCall(DMLabelGetValue(label, cell, &cval));
999accc9626SMatthew G. Knepley     PetscCall(DMPlexGetTransitiveClosure(dm, cell, PETSC_TRUE, &closureSize, &closure));
1000accc9626SMatthew G. Knepley     /* Mark points in the cell closure that touch the fault */
1001accc9626SMatthew G. Knepley     for (d = 0; d < dim; ++d) {
1002accc9626SMatthew G. Knepley       for (cl = 0; cl < closureSize*2; cl += 2) {
1003accc9626SMatthew G. Knepley         const PetscInt clp = closure[cl];
1004accc9626SMatthew G. Knepley         PetscInt       clval;
1005accc9626SMatthew G. Knepley 
1006accc9626SMatthew G. Knepley         if ((clp < pStart[d]) || (clp >= pEnd[d])) continue;
1007accc9626SMatthew G. Knepley         PetscCall(DMLabelGetValue(label, clp, &clval));
1008accc9626SMatthew G. Knepley         if (clval == -1) {
1009accc9626SMatthew G. Knepley           const PetscInt *cone;
1010accc9626SMatthew G. Knepley           PetscInt        coneSize, c;
1011accc9626SMatthew G. Knepley 
1012accc9626SMatthew G. Knepley           /* If a cone point touches the fault, then this point touches the fault */
1013accc9626SMatthew G. Knepley           PetscCall(DMPlexGetCone(dm, clp, &cone));
1014accc9626SMatthew G. Knepley           PetscCall(DMPlexGetConeSize(dm, clp, &coneSize));
1015accc9626SMatthew G. Knepley           for (c = 0; c < coneSize; ++c) {
1016accc9626SMatthew G. Knepley             PetscInt cpval;
1017accc9626SMatthew G. Knepley 
1018accc9626SMatthew G. Knepley             PetscCall(DMLabelGetValue(label, cone[c], &cpval));
1019accc9626SMatthew G. Knepley             if (cpval != -1) {
1020accc9626SMatthew G. Knepley               PetscInt dep;
1021accc9626SMatthew G. Knepley 
1022accc9626SMatthew G. Knepley               PetscCall(DMPlexGetPointDepth(dm, clp, &dep));
1023accc9626SMatthew G. Knepley               clval = cval < 0 ? -(shift+dep) : shift+dep;
1024accc9626SMatthew G. Knepley               PetscCall(DMLabelSetValue(label, clp, clval));
1025accc9626SMatthew G. Knepley               break;
1026accc9626SMatthew G. Knepley             }
1027accc9626SMatthew G. Knepley           }
1028accc9626SMatthew G. Knepley         }
1029accc9626SMatthew G. Knepley         /* Mark neighbor cells through marked faces (these cells must also touch the fault) */
1030accc9626SMatthew G. Knepley         if (d == dim-1 && clval != -1) {
1031accc9626SMatthew G. Knepley           const PetscInt *support;
1032accc9626SMatthew G. Knepley           PetscInt        supportSize, s, nval;
1033accc9626SMatthew G. Knepley 
1034accc9626SMatthew G. Knepley           PetscCall(DMPlexGetSupport(dm, clp, &support));
1035accc9626SMatthew G. Knepley           PetscCall(DMPlexGetSupportSize(dm, clp, &supportSize));
1036accc9626SMatthew G. Knepley           for (s = 0; s < supportSize; ++s) {
1037accc9626SMatthew G. Knepley             PetscCall(DMLabelGetValue(label, support[s], &nval));
1038accc9626SMatthew G. Knepley             if (nval == -1) {
1039accc9626SMatthew G. Knepley               PetscCall(DMLabelSetValue(label, support[s], clval < 0 ? clval-1 : clval+1));
1040accc9626SMatthew G. Knepley               PetscCall(DMPlexPointQueueEnqueue(queue, support[s]));
1041accc9626SMatthew G. Knepley             }
1042accc9626SMatthew G. Knepley           }
1043accc9626SMatthew G. Knepley         }
1044accc9626SMatthew G. Knepley       }
1045accc9626SMatthew G. Knepley     }
1046accc9626SMatthew G. Knepley     PetscCall(DMPlexRestoreTransitiveClosure(dm, cell, PETSC_TRUE, &closureSize, &closure));
1047accc9626SMatthew G. Knepley   }
1048accc9626SMatthew G. Knepley   PetscCall(PetscFree2(pStart, pEnd));
1049accc9626SMatthew G. Knepley   PetscFunctionReturn(0);
1050accc9626SMatthew G. Knepley }
1051accc9626SMatthew G. Knepley 
1052accc9626SMatthew G. Knepley typedef struct {
1053accc9626SMatthew G. Knepley   DM               dm;
1054accc9626SMatthew G. Knepley   DMPlexPointQueue queue;
1055accc9626SMatthew G. Knepley } PointDivision;
1056accc9626SMatthew G. Knepley 
1057accc9626SMatthew G. Knepley static PetscErrorCode divideCell(DMLabel label, PetscInt p, PetscInt val, void *ctx)
1058accc9626SMatthew G. Knepley {
1059accc9626SMatthew G. Knepley   PointDivision  *div  = (PointDivision *) ctx;
1060accc9626SMatthew G. Knepley   PetscInt        cval = val < 0 ? val-1 : val+1;
1061accc9626SMatthew G. Knepley   const PetscInt *support;
1062accc9626SMatthew G. Knepley   PetscInt        supportSize, s;
1063accc9626SMatthew G. Knepley 
1064accc9626SMatthew G. Knepley   PetscFunctionBegin;
1065accc9626SMatthew G. Knepley   PetscCall(DMPlexGetSupport(div->dm, p, &support));
1066accc9626SMatthew G. Knepley   PetscCall(DMPlexGetSupportSize(div->dm, p, &supportSize));
1067accc9626SMatthew G. Knepley   for (s = 0; s < supportSize; ++s) {
1068accc9626SMatthew G. Knepley     PetscCall(DMLabelSetValue(label, support[s], cval));
1069accc9626SMatthew G. Knepley     PetscCall(DMPlexPointQueueEnqueue(div->queue, support[s]));
1070accc9626SMatthew G. Knepley   }
1071accc9626SMatthew G. Knepley   PetscFunctionReturn(0);
1072accc9626SMatthew G. Knepley }
1073accc9626SMatthew G. Knepley 
1074accc9626SMatthew G. Knepley /* Mark cells by label propagation */
1075accc9626SMatthew G. Knepley static PetscErrorCode DMPlexLabelFaultHalo(DM dm, DMLabel faultLabel)
1076accc9626SMatthew G. Knepley {
1077accc9626SMatthew G. Knepley   DMPlexPointQueue queue = NULL;
1078accc9626SMatthew G. Knepley   PointDivision    div;
1079accc9626SMatthew G. Knepley   PetscSF          pointSF;
1080accc9626SMatthew G. Knepley   IS               pointIS;
1081accc9626SMatthew G. Knepley   const PetscInt  *points;
1082accc9626SMatthew G. Knepley   PetscBool        empty;
1083accc9626SMatthew G. Knepley   PetscInt         dim, shift = 100, n, i;
1084accc9626SMatthew G. Knepley 
1085accc9626SMatthew G. Knepley   PetscFunctionBegin;
1086accc9626SMatthew G. Knepley   PetscCall(DMGetDimension(dm, &dim));
1087accc9626SMatthew G. Knepley   PetscCall(DMPlexPointQueueCreate(1024, &queue));
1088accc9626SMatthew G. Knepley   div.dm    = dm;
1089accc9626SMatthew G. Knepley   div.queue = queue;
1090accc9626SMatthew G. Knepley   /* Enqueue cells on fault */
1091accc9626SMatthew G. Knepley   PetscCall(DMLabelGetStratumIS(faultLabel, shift+dim, &pointIS));
1092accc9626SMatthew G. Knepley   if (pointIS) {
1093accc9626SMatthew G. Knepley     PetscCall(ISGetLocalSize(pointIS, &n));
1094accc9626SMatthew G. Knepley     PetscCall(ISGetIndices(pointIS, &points));
1095accc9626SMatthew G. Knepley     for (i = 0; i < n; ++i) {PetscCall(DMPlexPointQueueEnqueue(queue, points[i]));}
1096accc9626SMatthew G. Knepley     PetscCall(ISRestoreIndices(pointIS, &points));
1097accc9626SMatthew G. Knepley     PetscCall(ISDestroy(&pointIS));
1098accc9626SMatthew G. Knepley   }
1099accc9626SMatthew G. Knepley   PetscCall(DMLabelGetStratumIS(faultLabel, -(shift+dim), &pointIS));
1100accc9626SMatthew G. Knepley   if (pointIS) {
1101accc9626SMatthew G. Knepley     PetscCall(ISGetLocalSize(pointIS, &n));
1102accc9626SMatthew G. Knepley     PetscCall(ISGetIndices(pointIS, &points));
1103accc9626SMatthew G. Knepley     for (i = 0; i < n; ++i) {PetscCall(DMPlexPointQueueEnqueue(queue, points[i]));}
1104accc9626SMatthew G. Knepley     PetscCall(ISRestoreIndices(pointIS, &points));
1105accc9626SMatthew G. Knepley     PetscCall(ISDestroy(&pointIS));
1106accc9626SMatthew G. Knepley   }
1107accc9626SMatthew G. Knepley 
1108accc9626SMatthew G. Knepley   PetscCall(DMGetPointSF(dm, &pointSF));
1109accc9626SMatthew G. Knepley   PetscCall(DMLabelPropagateBegin(faultLabel, pointSF));
1110accc9626SMatthew G. Knepley   /* While edge queue is not empty: */
1111accc9626SMatthew G. Knepley   PetscCall(DMPlexPointQueueEmptyCollective((PetscObject) dm, queue, &empty));
1112accc9626SMatthew G. Knepley   while (!empty) {
1113accc9626SMatthew G. Knepley     PetscCall(DivideCells_Private(dm, faultLabel, queue));
1114accc9626SMatthew G. Knepley     PetscCall(DMLabelPropagatePush(faultLabel, pointSF, divideCell, &div));
1115accc9626SMatthew G. Knepley     PetscCall(DMPlexPointQueueEmptyCollective((PetscObject) dm, queue, &empty));
1116accc9626SMatthew G. Knepley   }
1117accc9626SMatthew G. Knepley   PetscCall(DMLabelPropagateEnd(faultLabel, pointSF));
1118accc9626SMatthew G. Knepley   PetscCall(DMPlexPointQueueDestroy(&queue));
1119accc9626SMatthew G. Knepley   PetscFunctionReturn(0);
1120accc9626SMatthew G. Knepley }
1121accc9626SMatthew G. Knepley 
1122607ab7a9SMatthew G. Knepley /*
1123faedd622SMatthew G. Knepley   We are adding three kinds of points here:
1124607ab7a9SMatthew G. Knepley     Replicated:     Copies of points which exist in the mesh, such as vertices identified across a fault
1125faedd622SMatthew G. Knepley     Non-replicated: Points which exist on the fault, but are not replicated
1126b6dfa339SMatthew G. Knepley     Ghost:          These are shared fault faces which are not owned by this process. These do not produce hybrid cells and do not replicate
1127607ab7a9SMatthew G. Knepley     Hybrid:         Entirely new points, such as cohesive cells
1128a6ae58d1SMatthew G. Knepley 
1129a6ae58d1SMatthew G. Knepley   When creating subsequent cohesive cells, we shift the old hybrid cells to the end of the numbering at
1130a6ae58d1SMatthew G. Knepley   each depth so that the new split/hybrid points can be inserted as a block.
1131607ab7a9SMatthew G. Knepley */
11327db7e0a7SMatthew G. Knepley static PetscErrorCode DMPlexConstructCohesiveCells_Internal(DM dm, DMLabel label, DMLabel splitLabel, DM sdm)
1133cd0c2139SMatthew G Knepley {
1134cd0c2139SMatthew G Knepley   MPI_Comm         comm;
1135607ab7a9SMatthew G. Knepley   IS               valueIS;
1136607ab7a9SMatthew G. Knepley   PetscInt         numSP = 0;          /* The number of depths for which we have replicated points */
1137607ab7a9SMatthew G. Knepley   const PetscInt  *values;             /* List of depths for which we have replicated points */
113818c5995bSMatthew G. Knepley   IS              *splitIS;
113918c5995bSMatthew G. Knepley   IS              *unsplitIS;
1140b6dfa339SMatthew G. Knepley   IS               ghostIS;
1141607ab7a9SMatthew G. Knepley   PetscInt        *numSplitPoints;     /* The number of replicated points at each depth */
114218c5995bSMatthew G. Knepley   PetscInt        *numUnsplitPoints;   /* The number of non-replicated points at each depth which still give rise to hybrid points */
114336dbac82SMatthew G. Knepley   PetscInt        *numHybridPoints;    /* The number of new hybrid points at each depth */
114436dbac82SMatthew G. Knepley   PetscInt        *numHybridPointsOld; /* The number of existing hybrid points at each depth */
1145b6dfa339SMatthew G. Knepley   PetscInt         numGhostPoints;     /* The number of unowned, shared fault faces */
1146607ab7a9SMatthew G. Knepley   const PetscInt **splitPoints;        /* Replicated points for each depth */
114718c5995bSMatthew G. Knepley   const PetscInt **unsplitPoints;      /* Non-replicated points for each depth */
1148b6dfa339SMatthew G. Knepley   const PetscInt  *ghostPoints;        /* Ghost fault faces */
1149cd0c2139SMatthew G Knepley   PetscSection     coordSection;
1150cd0c2139SMatthew G Knepley   Vec              coordinates;
1151cd0c2139SMatthew G Knepley   PetscScalar     *coords;
1152a6ae58d1SMatthew G. Knepley   PetscInt        *depthMax;           /* The first hybrid point at each depth in the original mesh */
1153a6ae58d1SMatthew G. Knepley   PetscInt        *depthEnd;           /* The point limit at each depth in the original mesh */
1154607ab7a9SMatthew G. Knepley   PetscInt        *depthShift;         /* Number of replicated+hybrid points at each depth */
1155607ab7a9SMatthew G. Knepley   PetscInt        *pMaxNew;            /* The first replicated point at each depth in the new mesh, hybrids come after this */
1156607ab7a9SMatthew G. Knepley   PetscInt        *coneNew, *coneONew, *supportNew;
115718c5995bSMatthew G. Knepley   PetscInt         shift = 100, shift2 = 200, depth = 0, dep, dim, d, sp, maxConeSize, maxSupportSize, maxConeSizeNew, maxSupportSizeNew, numLabels, vStart, vEnd, pEnd, p, v;
1158cd0c2139SMatthew G Knepley 
1159cd0c2139SMatthew G Knepley   PetscFunctionBegin;
11609566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)dm,&comm));
11619566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dm, &dim));
11629566063dSJacob Faibussowitsch   PetscCall(DMPlexGetDepth(dm, &depth));
11639566063dSJacob Faibussowitsch   PetscCall(DMPlexGetDepthStratum(dm, 0, &vStart, &vEnd));
1164412e9a14SMatthew G. Knepley   /* We do not want this label automatically computed, instead we compute it here */
11659566063dSJacob Faibussowitsch   PetscCall(DMCreateLabel(sdm, "celltype"));
1166cd0c2139SMatthew G Knepley   /* Count split points and add cohesive cells */
11679566063dSJacob Faibussowitsch   PetscCall(DMPlexGetMaxSizes(dm, &maxConeSize, &maxSupportSize));
11689566063dSJacob Faibussowitsch   PetscCall(PetscMalloc5(depth+1,&depthMax,depth+1,&depthEnd,2*(depth+1),&depthShift,depth+1,&pMaxNew,depth+1,&numHybridPointsOld));
11699566063dSJacob Faibussowitsch   PetscCall(PetscMalloc7(depth+1,&splitIS,depth+1,&unsplitIS,depth+1,&numSplitPoints,depth+1,&numUnsplitPoints,depth+1,&numHybridPoints,depth+1,&splitPoints,depth+1,&unsplitPoints));
1170607ab7a9SMatthew G. Knepley   for (d = 0; d <= depth; ++d) {
11719566063dSJacob Faibussowitsch     PetscCall(DMPlexGetDepthStratum(dm, d, NULL, &pMaxNew[d]));
11729566063dSJacob Faibussowitsch     PetscCall(DMPlexGetTensorPrismBounds_Internal(dm, d, &depthMax[d], NULL));
1173a6ae58d1SMatthew G. Knepley     depthEnd[d]           = pMaxNew[d];
1174a6ae58d1SMatthew G. Knepley     depthMax[d]           = depthMax[d] < 0 ? depthEnd[d] : depthMax[d];
1175607ab7a9SMatthew G. Knepley     numSplitPoints[d]     = 0;
117618c5995bSMatthew G. Knepley     numUnsplitPoints[d]   = 0;
1177607ab7a9SMatthew G. Knepley     numHybridPoints[d]    = 0;
1178a6ae58d1SMatthew G. Knepley     numHybridPointsOld[d] = depthMax[d] < 0 ? 0 : depthEnd[d] - depthMax[d];
1179607ab7a9SMatthew G. Knepley     splitPoints[d]        = NULL;
118018c5995bSMatthew G. Knepley     unsplitPoints[d]      = NULL;
118118c5995bSMatthew G. Knepley     splitIS[d]            = NULL;
118218c5995bSMatthew G. Knepley     unsplitIS[d]          = NULL;
118359eef20bSToby Isaac     /* we are shifting the existing hybrid points with the stratum behind them, so
118459eef20bSToby Isaac      * the split comes at the end of the normal points, i.e., at depthMax[d] */
118559eef20bSToby Isaac     depthShift[2*d]       = depthMax[d];
118659eef20bSToby Isaac     depthShift[2*d+1]     = 0;
1187607ab7a9SMatthew G. Knepley   }
1188b6dfa339SMatthew G. Knepley   numGhostPoints = 0;
1189b6dfa339SMatthew G. Knepley   ghostPoints    = NULL;
1190cd0c2139SMatthew G Knepley   if (label) {
11919566063dSJacob Faibussowitsch     PetscCall(DMLabelGetValueIS(label, &valueIS));
11929566063dSJacob Faibussowitsch     PetscCall(ISGetLocalSize(valueIS, &numSP));
11939566063dSJacob Faibussowitsch     PetscCall(ISGetIndices(valueIS, &values));
1194cd0c2139SMatthew G Knepley   }
1195cd0c2139SMatthew G Knepley   for (sp = 0; sp < numSP; ++sp) {
1196cd0c2139SMatthew G Knepley     const PetscInt dep = values[sp];
1197cd0c2139SMatthew G Knepley 
1198cd0c2139SMatthew G Knepley     if ((dep < 0) || (dep > depth)) continue;
11999566063dSJacob Faibussowitsch     PetscCall(DMLabelGetStratumIS(label, dep, &splitIS[dep]));
120018c5995bSMatthew G. Knepley     if (splitIS[dep]) {
12019566063dSJacob Faibussowitsch       PetscCall(ISGetLocalSize(splitIS[dep], &numSplitPoints[dep]));
12029566063dSJacob Faibussowitsch       PetscCall(ISGetIndices(splitIS[dep], &splitPoints[dep]));
120318c5995bSMatthew G. Knepley     }
12049566063dSJacob Faibussowitsch     PetscCall(DMLabelGetStratumIS(label, shift2+dep, &unsplitIS[dep]));
120518c5995bSMatthew G. Knepley     if (unsplitIS[dep]) {
12069566063dSJacob Faibussowitsch       PetscCall(ISGetLocalSize(unsplitIS[dep], &numUnsplitPoints[dep]));
12079566063dSJacob Faibussowitsch       PetscCall(ISGetIndices(unsplitIS[dep], &unsplitPoints[dep]));
1208cd0c2139SMatthew G Knepley     }
1209cd0c2139SMatthew G Knepley   }
1210b6dfa339SMatthew G. Knepley   PetscCall(DMLabelGetStratumIS(label, shift2+dim-1, &ghostIS));
1211b6dfa339SMatthew G. Knepley   if (ghostIS) {
1212b6dfa339SMatthew G. Knepley     PetscCall(ISGetLocalSize(ghostIS, &numGhostPoints));
1213b6dfa339SMatthew G. Knepley     PetscCall(ISGetIndices(ghostIS, &ghostPoints));
1214b6dfa339SMatthew G. Knepley   }
1215607ab7a9SMatthew G. Knepley   /* Calculate number of hybrid points */
121618c5995bSMatthew G. Knepley   for (d = 1; d <= depth; ++d) numHybridPoints[d]     = numSplitPoints[d-1] + numUnsplitPoints[d-1]; /* There is a hybrid cell/face/edge for every split face/edge/vertex   */
12172582d50cSToby Isaac   for (d = 0; d <= depth; ++d) depthShift[2*d+1]      = numSplitPoints[d] + numHybridPoints[d];
12189566063dSJacob Faibussowitsch   PetscCall(DMPlexShiftPointSetUp_Internal(depth,depthShift));
121959eef20bSToby Isaac   /* the end of the points in this stratum that come before the new points:
122059eef20bSToby Isaac    * shifting pMaxNew[d] gets the new start of the next stratum, then count back the old hybrid points and the newly
122159eef20bSToby Isaac    * added points */
12222582d50cSToby Isaac   for (d = 0; d <= depth; ++d) pMaxNew[d]             = DMPlexShiftPoint_Internal(pMaxNew[d],depth,depthShift) - (numHybridPointsOld[d] + numSplitPoints[d] + numHybridPoints[d]);
12239566063dSJacob Faibussowitsch   PetscCall(DMPlexShiftSizes_Internal(dm, depthShift, sdm));
1224cd0c2139SMatthew G Knepley   /* Step 3: Set cone/support sizes for new points */
1225cd0c2139SMatthew G Knepley   for (dep = 0; dep <= depth; ++dep) {
1226cd0c2139SMatthew G Knepley     for (p = 0; p < numSplitPoints[dep]; ++p) {
1227cd0c2139SMatthew G Knepley       const PetscInt  oldp   = splitPoints[dep][p];
12282582d50cSToby Isaac       const PetscInt  newp   = DMPlexShiftPoint_Internal(oldp, depth, depthShift) /*oldp + depthOffset[dep]*/;
12294c367dbcSMatthew G. Knepley       const PetscInt  splitp = p    + pMaxNew[dep];
1230cd0c2139SMatthew G Knepley       const PetscInt *support;
1231394c2f0fSMatthew G. Knepley       DMPolytopeType  ct;
12324c367dbcSMatthew G. Knepley       PetscInt        coneSize, supportSize, qf, qn, qp, e;
1233cd0c2139SMatthew G Knepley 
12349566063dSJacob Faibussowitsch       PetscCall(DMPlexGetConeSize(dm, oldp, &coneSize));
12359566063dSJacob Faibussowitsch       PetscCall(DMPlexSetConeSize(sdm, splitp, coneSize));
12369566063dSJacob Faibussowitsch       PetscCall(DMPlexGetSupportSize(dm, oldp, &supportSize));
12379566063dSJacob Faibussowitsch       PetscCall(DMPlexSetSupportSize(sdm, splitp, supportSize));
12389566063dSJacob Faibussowitsch       PetscCall(DMPlexGetCellType(dm, oldp, &ct));
12399566063dSJacob Faibussowitsch       PetscCall(DMPlexSetCellType(sdm, splitp, ct));
1240cd0c2139SMatthew G Knepley       if (dep == depth-1) {
12414c367dbcSMatthew G. Knepley         const PetscInt hybcell = p + pMaxNew[dep+1] + numSplitPoints[dep+1];
12424c367dbcSMatthew G. Knepley 
1243cd0c2139SMatthew G Knepley         /* Add cohesive cells, they are prisms */
12449566063dSJacob Faibussowitsch         PetscCall(DMPlexSetConeSize(sdm, hybcell, 2 + coneSize));
1245412e9a14SMatthew G. Knepley         switch (coneSize) {
12469566063dSJacob Faibussowitsch           case 2: PetscCall(DMPlexSetCellType(sdm, hybcell, DM_POLYTOPE_SEG_PRISM_TENSOR));break;
12479566063dSJacob Faibussowitsch           case 3: PetscCall(DMPlexSetCellType(sdm, hybcell, DM_POLYTOPE_TRI_PRISM_TENSOR));break;
12489566063dSJacob Faibussowitsch           case 4: PetscCall(DMPlexSetCellType(sdm, hybcell, DM_POLYTOPE_QUAD_PRISM_TENSOR));break;
1249412e9a14SMatthew G. Knepley         }
1250b6dfa339SMatthew G. Knepley         /* Shared fault faces with only one support cell now have two with the cohesive cell */
1251b6dfa339SMatthew G. Knepley         /*   TODO Check thaat oldp has rootdegree == 1 */
1252b6dfa339SMatthew G. Knepley         if (supportSize == 1) {
1253b6dfa339SMatthew G. Knepley           const PetscInt *support;
1254b6dfa339SMatthew G. Knepley           PetscInt        val;
1255b6dfa339SMatthew G. Knepley 
1256b6dfa339SMatthew G. Knepley           PetscCall(DMPlexGetSupport(dm, oldp, &support));
1257b6dfa339SMatthew G. Knepley           PetscCall(DMLabelGetValue(label, support[0], &val));
1258b6dfa339SMatthew G. Knepley           if (val < 0) PetscCall(DMPlexSetSupportSize(sdm, splitp, 2));
1259b6dfa339SMatthew G. Knepley           else         PetscCall(DMPlexSetSupportSize(sdm, newp,   2));
1260b6dfa339SMatthew G. Knepley         }
1261cd0c2139SMatthew G Knepley       } else if (dep == 0) {
12624c367dbcSMatthew G. Knepley         const PetscInt hybedge = p + pMaxNew[dep+1] + numSplitPoints[dep+1];
1263cd0c2139SMatthew G Knepley 
12649566063dSJacob Faibussowitsch         PetscCall(DMPlexGetSupport(dm, oldp, &support));
12654c367dbcSMatthew G. Knepley         for (e = 0, qn = 0, qp = 0, qf = 0; e < supportSize; ++e) {
1266cd0c2139SMatthew G Knepley           PetscInt val;
1267cd0c2139SMatthew G Knepley 
12689566063dSJacob Faibussowitsch           PetscCall(DMLabelGetValue(label, support[e], &val));
12694c367dbcSMatthew G. Knepley           if (val == 1) ++qf;
12704c367dbcSMatthew G. Knepley           if ((val == 1) || (val ==  (shift + 1))) ++qn;
12714c367dbcSMatthew G. Knepley           if ((val == 1) || (val == -(shift + 1))) ++qp;
1272cd0c2139SMatthew G Knepley         }
12734c367dbcSMatthew G. Knepley         /* Split old vertex: Edges into original vertex and new cohesive edge */
12749566063dSJacob Faibussowitsch         PetscCall(DMPlexSetSupportSize(sdm, newp, qn+1));
12754c367dbcSMatthew G. Knepley         /* Split new vertex: Edges into split vertex and new cohesive edge */
12769566063dSJacob Faibussowitsch         PetscCall(DMPlexSetSupportSize(sdm, splitp, qp+1));
12774c367dbcSMatthew G. Knepley         /* Add hybrid edge */
12789566063dSJacob Faibussowitsch         PetscCall(DMPlexSetConeSize(sdm, hybedge, 2));
12799566063dSJacob Faibussowitsch         PetscCall(DMPlexSetSupportSize(sdm, hybedge, qf));
12809566063dSJacob Faibussowitsch         PetscCall(DMPlexSetCellType(sdm, hybedge, DM_POLYTOPE_POINT_PRISM_TENSOR));
1281cd0c2139SMatthew G Knepley       } else if (dep == dim-2) {
12824c367dbcSMatthew G. Knepley         const PetscInt hybface = p + pMaxNew[dep+1] + numSplitPoints[dep+1];
12834c367dbcSMatthew G. Knepley 
12849566063dSJacob Faibussowitsch         PetscCall(DMPlexGetSupport(dm, oldp, &support));
12854c367dbcSMatthew G. Knepley         for (e = 0, qn = 0, qp = 0, qf = 0; e < supportSize; ++e) {
1286cd0c2139SMatthew G Knepley           PetscInt val;
1287cd0c2139SMatthew G Knepley 
12889566063dSJacob Faibussowitsch           PetscCall(DMLabelGetValue(label, support[e], &val));
12894c367dbcSMatthew G. Knepley           if (val == dim-1) ++qf;
12904c367dbcSMatthew G. Knepley           if ((val == dim-1) || (val ==  (shift + dim-1))) ++qn;
12914c367dbcSMatthew G. Knepley           if ((val == dim-1) || (val == -(shift + dim-1))) ++qp;
1292cd0c2139SMatthew G Knepley         }
12934c367dbcSMatthew G. Knepley         /* Split old edge: Faces into original edge and cohesive face (positive side?) */
12949566063dSJacob Faibussowitsch         PetscCall(DMPlexSetSupportSize(sdm, newp, qn+1));
12954c367dbcSMatthew G. Knepley         /* Split new edge: Faces into split edge and cohesive face (negative side?) */
12969566063dSJacob Faibussowitsch         PetscCall(DMPlexSetSupportSize(sdm, splitp, qp+1));
12974c367dbcSMatthew G. Knepley         /* Add hybrid face */
12989566063dSJacob Faibussowitsch         PetscCall(DMPlexSetConeSize(sdm, hybface, 4));
12999566063dSJacob Faibussowitsch         PetscCall(DMPlexSetSupportSize(sdm, hybface, qf));
13009566063dSJacob Faibussowitsch         PetscCall(DMPlexSetCellType(sdm, hybface, DM_POLYTOPE_SEG_PRISM_TENSOR));
1301cd0c2139SMatthew G Knepley       }
1302cd0c2139SMatthew G Knepley     }
1303cd0c2139SMatthew G Knepley   }
130418c5995bSMatthew G. Knepley   for (dep = 0; dep <= depth; ++dep) {
130518c5995bSMatthew G. Knepley     for (p = 0; p < numUnsplitPoints[dep]; ++p) {
130618c5995bSMatthew G. Knepley       const PetscInt  oldp   = unsplitPoints[dep][p];
13072582d50cSToby Isaac       const PetscInt  newp   = DMPlexShiftPoint_Internal(oldp, depth, depthShift) /*oldp + depthOffset[dep]*/;
130818c5995bSMatthew G. Knepley       const PetscInt *support;
1309da1dd7e4SMatthew G. Knepley       PetscInt        coneSize, supportSize, qf, e, s;
131018c5995bSMatthew G. Knepley 
13119566063dSJacob Faibussowitsch       PetscCall(DMPlexGetConeSize(dm, oldp, &coneSize));
13129566063dSJacob Faibussowitsch       PetscCall(DMPlexGetSupportSize(dm, oldp, &supportSize));
13139566063dSJacob Faibussowitsch       PetscCall(DMPlexGetSupport(dm, oldp, &support));
131418c5995bSMatthew G. Knepley       if (dep == 0) {
131518c5995bSMatthew G. Knepley         const PetscInt hybedge = p + pMaxNew[dep+1] + numSplitPoints[dep+1] + numSplitPoints[dep];
131618c5995bSMatthew G. Knepley 
131739254ff6SMatthew G. Knepley         /* Unsplit vertex: Edges into original vertex, split edges, and new cohesive edge twice */
131839254ff6SMatthew G. Knepley         for (s = 0, qf = 0; s < supportSize; ++s, ++qf) {
13199566063dSJacob Faibussowitsch           PetscCall(PetscFindInt(support[s], numSplitPoints[dep+1], splitPoints[dep+1], &e));
132039254ff6SMatthew G. Knepley           if (e >= 0) ++qf;
132139254ff6SMatthew G. Knepley         }
13229566063dSJacob Faibussowitsch         PetscCall(DMPlexSetSupportSize(sdm, newp, qf+2));
132318c5995bSMatthew G. Knepley         /* Add hybrid edge */
13249566063dSJacob Faibussowitsch         PetscCall(DMPlexSetConeSize(sdm, hybedge, 2));
1325e1757548SMatthew G. Knepley         for (e = 0, qf = 0; e < supportSize; ++e) {
1326e1757548SMatthew G. Knepley           PetscInt val;
1327e1757548SMatthew G. Knepley 
13289566063dSJacob Faibussowitsch           PetscCall(DMLabelGetValue(label, support[e], &val));
1329e1757548SMatthew G. Knepley           /* Split and unsplit edges produce hybrid faces */
1330da1dd7e4SMatthew G. Knepley           if (val == 1) ++qf;
1331da1dd7e4SMatthew G. Knepley           if (val == (shift2 + 1)) ++qf;
1332e1757548SMatthew G. Knepley         }
13339566063dSJacob Faibussowitsch         PetscCall(DMPlexSetSupportSize(sdm, hybedge, qf));
13349566063dSJacob Faibussowitsch         PetscCall(DMPlexSetCellType(sdm, hybedge, DM_POLYTOPE_POINT_PRISM_TENSOR));
133518c5995bSMatthew G. Knepley       } else if (dep == dim-2) {
133618c5995bSMatthew G. Knepley         const PetscInt hybface = p + pMaxNew[dep+1] + numSplitPoints[dep+1] + numSplitPoints[dep];
1337cd0c2139SMatthew G Knepley         PetscInt       val;
1338cd0c2139SMatthew G Knepley 
1339da1dd7e4SMatthew G. Knepley         for (e = 0, qf = 0; e < supportSize; ++e) {
13409566063dSJacob Faibussowitsch           PetscCall(DMLabelGetValue(label, support[e], &val));
1341da1dd7e4SMatthew G. Knepley           if (val == dim-1) qf += 2;
1342da1dd7e4SMatthew G. Knepley           else              ++qf;
1343cd0c2139SMatthew G Knepley         }
134418c5995bSMatthew G. Knepley         /* Unsplit edge: Faces into original edge, split face, and cohesive face twice */
13459566063dSJacob Faibussowitsch         PetscCall(DMPlexSetSupportSize(sdm, newp, qf+2));
134618c5995bSMatthew G. Knepley         /* Add hybrid face */
1347da1dd7e4SMatthew G. Knepley         for (e = 0, qf = 0; e < supportSize; ++e) {
13489566063dSJacob Faibussowitsch           PetscCall(DMLabelGetValue(label, support[e], &val));
1349da1dd7e4SMatthew G. Knepley           if (val == dim-1) ++qf;
1350da1dd7e4SMatthew G. Knepley         }
13519566063dSJacob Faibussowitsch         PetscCall(DMPlexSetConeSize(sdm, hybface, 4));
13529566063dSJacob Faibussowitsch         PetscCall(DMPlexSetSupportSize(sdm, hybface, qf));
13539566063dSJacob Faibussowitsch         PetscCall(DMPlexSetCellType(sdm, hybface, DM_POLYTOPE_SEG_PRISM_TENSOR));
1354cd0c2139SMatthew G Knepley       }
1355cd0c2139SMatthew G Knepley     }
1356cd0c2139SMatthew G Knepley   }
1357cd0c2139SMatthew G Knepley   /* Step 4: Setup split DM */
13589566063dSJacob Faibussowitsch   PetscCall(DMSetUp(sdm));
13599566063dSJacob Faibussowitsch   PetscCall(DMPlexShiftPoints_Internal(dm, depthShift, sdm));
13609566063dSJacob Faibussowitsch   PetscCall(DMPlexGetMaxSizes(sdm, &maxConeSizeNew, &maxSupportSizeNew));
13619566063dSJacob Faibussowitsch   PetscCall(PetscMalloc3(PetscMax(maxConeSize, maxConeSizeNew)*3,&coneNew,PetscMax(maxConeSize, maxConeSizeNew)*3,&coneONew,PetscMax(maxSupportSize, maxSupportSizeNew),&supportNew));
1362cd0c2139SMatthew G Knepley   /* Step 6: Set cones and supports for new points */
1363cd0c2139SMatthew G Knepley   for (dep = 0; dep <= depth; ++dep) {
1364cd0c2139SMatthew G Knepley     for (p = 0; p < numSplitPoints[dep]; ++p) {
1365cd0c2139SMatthew G Knepley       const PetscInt  oldp   = splitPoints[dep][p];
13662582d50cSToby Isaac       const PetscInt  newp   = DMPlexShiftPoint_Internal(oldp, depth, depthShift) /*oldp + depthOffset[dep]*/;
13674c367dbcSMatthew G. Knepley       const PetscInt  splitp = p    + pMaxNew[dep];
1368cd0c2139SMatthew G Knepley       const PetscInt *cone, *support, *ornt;
1369b5a892a1SMatthew G. Knepley       DMPolytopeType  ct;
13704c367dbcSMatthew G. Knepley       PetscInt        coneSize, supportSize, q, qf, qn, qp, v, e, s;
1371cd0c2139SMatthew G Knepley 
13729566063dSJacob Faibussowitsch       PetscCall(DMPlexGetCellType(dm, oldp, &ct));
13739566063dSJacob Faibussowitsch       PetscCall(DMPlexGetConeSize(dm, oldp, &coneSize));
13749566063dSJacob Faibussowitsch       PetscCall(DMPlexGetCone(dm, oldp, &cone));
13759566063dSJacob Faibussowitsch       PetscCall(DMPlexGetConeOrientation(dm, oldp, &ornt));
13769566063dSJacob Faibussowitsch       PetscCall(DMPlexGetSupportSize(dm, oldp, &supportSize));
13779566063dSJacob Faibussowitsch       PetscCall(DMPlexGetSupport(dm, oldp, &support));
1378cd0c2139SMatthew G Knepley       if (dep == depth-1) {
137996a07cd0SMatthew G. Knepley         PetscBool       hasUnsplit = PETSC_FALSE;
13804c367dbcSMatthew G. Knepley         const PetscInt  hybcell    = p + pMaxNew[dep+1] + numSplitPoints[dep+1];
1381cd0c2139SMatthew G Knepley         const PetscInt *supportF;
1382cd0c2139SMatthew G Knepley 
1383b6dfa339SMatthew G. Knepley         coneONew[0] = coneONew[1] = -1000;
1384cd0c2139SMatthew G Knepley         /* Split face:       copy in old face to new face to start */
13859566063dSJacob Faibussowitsch         PetscCall(DMPlexGetSupport(sdm, newp,  &supportF));
13869566063dSJacob Faibussowitsch         PetscCall(DMPlexSetSupport(sdm, splitp, supportF));
1387cd0c2139SMatthew G Knepley         /* Split old face:   old vertices/edges in cone so no change */
1388cd0c2139SMatthew G Knepley         /* Split new face:   new vertices/edges in cone */
1389cd0c2139SMatthew G Knepley         for (q = 0; q < coneSize; ++q) {
13909566063dSJacob Faibussowitsch           PetscCall(PetscFindInt(cone[q], numSplitPoints[dep-1], splitPoints[dep-1], &v));
139118c5995bSMatthew G. Knepley           if (v < 0) {
13929566063dSJacob Faibussowitsch             PetscCall(PetscFindInt(cone[q], numUnsplitPoints[dep-1], unsplitPoints[dep-1], &v));
139363a3b9bcSJacob Faibussowitsch             PetscCheck(v >= 0,PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Could not locate point %" PetscInt_FMT " in split or unsplit points of depth %" PetscInt_FMT, cone[q], dep-1);
13942582d50cSToby Isaac             coneNew[2+q] = DMPlexShiftPoint_Internal(cone[q], depth, depthShift) /*cone[q] + depthOffset[dep-1]*/;
139596a07cd0SMatthew G. Knepley             hasUnsplit   = PETSC_TRUE;
139618c5995bSMatthew G. Knepley           } else {
13974c367dbcSMatthew G. Knepley             coneNew[2+q] = v + pMaxNew[dep-1];
1398163235baSMatthew G. Knepley             if (dep > 1) {
1399163235baSMatthew G. Knepley               const PetscInt *econe;
1400163235baSMatthew G. Knepley               PetscInt        econeSize, r, vs, vu;
1401163235baSMatthew G. Knepley 
14029566063dSJacob Faibussowitsch               PetscCall(DMPlexGetConeSize(dm, cone[q], &econeSize));
14039566063dSJacob Faibussowitsch               PetscCall(DMPlexGetCone(dm, cone[q], &econe));
1404163235baSMatthew G. Knepley               for (r = 0; r < econeSize; ++r) {
14059566063dSJacob Faibussowitsch                 PetscCall(PetscFindInt(econe[r], numSplitPoints[dep-2],   splitPoints[dep-2],   &vs));
14069566063dSJacob Faibussowitsch                 PetscCall(PetscFindInt(econe[r], numUnsplitPoints[dep-2], unsplitPoints[dep-2], &vu));
1407163235baSMatthew G. Knepley                 if (vs >= 0) continue;
140863a3b9bcSJacob Faibussowitsch                 PetscCheck(vu >= 0,PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Could not locate point %" PetscInt_FMT " in split or unsplit points of depth %" PetscInt_FMT, econe[r], dep-2);
1409163235baSMatthew G. Knepley                 hasUnsplit   = PETSC_TRUE;
1410163235baSMatthew G. Knepley               }
1411163235baSMatthew G. Knepley             }
1412cd0c2139SMatthew G Knepley           }
1413cd0c2139SMatthew G Knepley         }
14149566063dSJacob Faibussowitsch         PetscCall(DMPlexSetCone(sdm, splitp, &coneNew[2]));
14159566063dSJacob Faibussowitsch         PetscCall(DMPlexSetConeOrientation(sdm, splitp, ornt));
1416e537020bSMatthew G. Knepley         /* Face support */
1417b6dfa339SMatthew G. Knepley         PetscInt vals[2];
1418cd0c2139SMatthew G Knepley 
1419b6dfa339SMatthew G. Knepley         PetscCall(DMLabelGetValue(label, support[0], &vals[0]));
1420b6dfa339SMatthew G. Knepley         if (supportSize > 1) PetscCall(DMLabelGetValue(label, support[1], &vals[1]));
1421b6dfa339SMatthew G. Knepley         else                 vals[1] = -vals[0];
1422b6dfa339SMatthew G. Knepley         PetscCheck(vals[0]*vals[1] < 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid support labels %" PetscInt_FMT " %" PetscInt_FMT, vals[0], vals[1]);
1423b6dfa339SMatthew G. Knepley 
1424b6dfa339SMatthew G. Knepley         for (s = 0; s < 2; ++s) {
1425b6dfa339SMatthew G. Knepley           if (s >= supportSize) {
1426b6dfa339SMatthew G. Knepley             if (vals[s] < 0) {
1427b6dfa339SMatthew G. Knepley               /* Ghost old face:   Replace negative side cell with cohesive cell */
1428accc9626SMatthew G. Knepley               PetscCall(DMPlexInsertSupport(sdm, newp,   s, hybcell));
1429b6dfa339SMatthew G. Knepley             } else {
1430b6dfa339SMatthew G. Knepley               /* Ghost new face:   Replace positive side cell with cohesive cell */
1431accc9626SMatthew G. Knepley               PetscCall(DMPlexInsertSupport(sdm, splitp, s, hybcell));
1432b6dfa339SMatthew G. Knepley             }
1433b6dfa339SMatthew G. Knepley           } else {
1434b6dfa339SMatthew G. Knepley             if (vals[s] < 0) {
1435cd0c2139SMatthew G Knepley               /* Split old face:   Replace negative side cell with cohesive cell */
14369566063dSJacob Faibussowitsch               PetscCall(DMPlexInsertSupport(sdm, newp,   s, hybcell));
1437cd0c2139SMatthew G Knepley             } else {
1438cd0c2139SMatthew G Knepley               /* Split new face:   Replace positive side cell with cohesive cell */
14399566063dSJacob Faibussowitsch               PetscCall(DMPlexInsertSupport(sdm, splitp, s, hybcell));
1440b6dfa339SMatthew G. Knepley             }
1441b6dfa339SMatthew G. Knepley           }
1442b6dfa339SMatthew G. Knepley         }
1443b6dfa339SMatthew G. Knepley         /* Get orientation for cohesive face using the positive side cell */
1444e537020bSMatthew G. Knepley         {
1445e537020bSMatthew G. Knepley           const PetscInt *ncone, *nconeO;
1446b6dfa339SMatthew G. Knepley           PetscInt        nconeSize, nc, ocell;
1447accc9626SMatthew G. Knepley           PetscBool       flip = PETSC_FALSE;
1448e537020bSMatthew G. Knepley 
1449b6dfa339SMatthew G. Knepley           if (supportSize > 1) {ocell = vals[0] < 0 ? support[1] : support[0];}
1450b6dfa339SMatthew G. Knepley           else                 {ocell = support[0]; flip = vals[0] < 0 ? PETSC_TRUE : PETSC_FALSE;}
1451b6dfa339SMatthew G. Knepley           PetscCall(DMPlexGetConeSize(dm, ocell, &nconeSize));
1452b6dfa339SMatthew G. Knepley           PetscCall(DMPlexGetCone(dm, ocell, &ncone));
1453e1a13daeSMatthew G. Knepley           PetscCall(DMPlexGetConeOrientation(dm, ocell, &nconeO));
1454e537020bSMatthew G. Knepley           for (nc = 0; nc < nconeSize; ++nc) {
1455e537020bSMatthew G. Knepley             if (ncone[nc] == oldp) {
1456b6dfa339SMatthew G. Knepley               coneONew[0] = flip ? -(nconeO[nc]+1) : nconeO[nc];
1457e537020bSMatthew G. Knepley               break;
1458cd0c2139SMatthew G Knepley             }
1459cd0c2139SMatthew G Knepley           }
1460b6dfa339SMatthew G. Knepley           PetscCheck(nc < nconeSize, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Could not locate face %" PetscInt_FMT " in neighboring cell %" PetscInt_FMT, oldp, ocell);
1461e537020bSMatthew G. Knepley         }
14624c367dbcSMatthew G. Knepley         /* Cohesive cell:    Old and new split face, then new cohesive faces */
1463b6dfa339SMatthew G. Knepley         {
1464b6dfa339SMatthew G. Knepley           const PetscInt No = DMPolytopeTypeGetNumArrangments(ct)/2;
1465b6dfa339SMatthew G. Knepley           PetscCheck((coneONew[0] >= -No) && (coneONew[0] < No), PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid %s orientation %" PetscInt_FMT, DMPolytopeTypes[ct], coneONew[0]);
1466b6dfa339SMatthew G. Knepley         }
1467b5a892a1SMatthew G. Knepley         const PetscInt *arr = DMPolytopeTypeGetArrangment(ct, coneONew[0]);
1468b5a892a1SMatthew G. Knepley 
1469fd4b9f15SMatthew G. Knepley         coneNew[0]  = newp;   /* Extracted negative side orientation above */
14704c367dbcSMatthew G. Knepley         coneNew[1]  = splitp;
14714c367dbcSMatthew G. Knepley         coneONew[1] = coneONew[0];
1472e537020bSMatthew G. Knepley         for (q = 0; q < coneSize; ++q) {
1473412e9a14SMatthew G. Knepley           /* Hybrid faces must follow order from oriented end face */
1474b5a892a1SMatthew G. Knepley           const PetscInt qa = arr[q*2+0];
1475b5a892a1SMatthew G. Knepley           const PetscInt qo = arr[q*2+1];
1476b5a892a1SMatthew G. Knepley           DMPolytopeType ft = dep == 2 ? DM_POLYTOPE_SEGMENT : DM_POLYTOPE_POINT;
1477412e9a14SMatthew G. Knepley 
14789566063dSJacob Faibussowitsch           PetscCall(PetscFindInt(cone[qa], numSplitPoints[dep-1], splitPoints[dep-1], &v));
147918c5995bSMatthew G. Knepley           if (v < 0) {
14809566063dSJacob Faibussowitsch             PetscCall(PetscFindInt(cone[qa], numUnsplitPoints[dep-1], unsplitPoints[dep-1], &v));
148118c5995bSMatthew G. Knepley             coneNew[2+q]  = v + pMaxNew[dep] + numSplitPoints[dep] + numSplitPoints[dep-1];
148218c5995bSMatthew G. Knepley           } else {
148318c5995bSMatthew G. Knepley             coneNew[2+q]  = v + pMaxNew[dep] + numSplitPoints[dep];
148418c5995bSMatthew G. Knepley           }
1485b5a892a1SMatthew G. Knepley           coneONew[2+q] = DMPolytopeTypeComposeOrientation(ft, qo, ornt[qa]);
1486e537020bSMatthew G. Knepley         }
14879566063dSJacob Faibussowitsch         PetscCall(DMPlexSetCone(sdm, hybcell, coneNew));
14889566063dSJacob Faibussowitsch         PetscCall(DMPlexSetConeOrientation(sdm, hybcell, coneONew));
148996a07cd0SMatthew G. Knepley         /* Label the hybrid cells on the boundary of the split */
14909566063dSJacob Faibussowitsch         if (hasUnsplit) PetscCall(DMLabelSetValue(label, -hybcell, dim));
1491cd0c2139SMatthew G Knepley       } else if (dep == 0) {
14924c367dbcSMatthew G. Knepley         const PetscInt hybedge = p + pMaxNew[dep+1] + numSplitPoints[dep+1];
1493cd0c2139SMatthew G Knepley 
1494cd0c2139SMatthew G Knepley         /* Split old vertex: Edges in old split faces and new cohesive edge */
14954c367dbcSMatthew G. Knepley         for (e = 0, qn = 0; e < supportSize; ++e) {
1496cd0c2139SMatthew G Knepley           PetscInt val;
1497cd0c2139SMatthew G Knepley 
14989566063dSJacob Faibussowitsch           PetscCall(DMLabelGetValue(label, support[e], &val));
1499cd0c2139SMatthew G Knepley           if ((val == 1) || (val == (shift + 1))) {
15002582d50cSToby Isaac             supportNew[qn++] = DMPlexShiftPoint_Internal(support[e], depth, depthShift) /*support[e] + depthOffset[dep+1]*/;
1501cd0c2139SMatthew G Knepley           }
1502cd0c2139SMatthew G Knepley         }
15034c367dbcSMatthew G. Knepley         supportNew[qn] = hybedge;
15049566063dSJacob Faibussowitsch         PetscCall(DMPlexSetSupport(sdm, newp, supportNew));
1505cd0c2139SMatthew G Knepley         /* Split new vertex: Edges in new split faces and new cohesive edge */
15064c367dbcSMatthew G. Knepley         for (e = 0, qp = 0; e < supportSize; ++e) {
1507cd0c2139SMatthew G Knepley           PetscInt val, edge;
1508cd0c2139SMatthew G Knepley 
15099566063dSJacob Faibussowitsch           PetscCall(DMLabelGetValue(label, support[e], &val));
1510cd0c2139SMatthew G Knepley           if (val == 1) {
15119566063dSJacob Faibussowitsch             PetscCall(PetscFindInt(support[e], numSplitPoints[dep+1], splitPoints[dep+1], &edge));
151263a3b9bcSJacob Faibussowitsch             PetscCheck(edge >= 0,comm, PETSC_ERR_ARG_WRONG, "Edge %" PetscInt_FMT " is not a split edge", support[e]);
15134c367dbcSMatthew G. Knepley             supportNew[qp++] = edge + pMaxNew[dep+1];
1514cd0c2139SMatthew G Knepley           } else if (val == -(shift + 1)) {
15152582d50cSToby Isaac             supportNew[qp++] = DMPlexShiftPoint_Internal(support[e], depth, depthShift) /*support[e] + depthOffset[dep+1]*/;
1516cd0c2139SMatthew G Knepley           }
1517cd0c2139SMatthew G Knepley         }
15184c367dbcSMatthew G. Knepley         supportNew[qp] = hybedge;
15199566063dSJacob Faibussowitsch         PetscCall(DMPlexSetSupport(sdm, splitp, supportNew));
15204c367dbcSMatthew G. Knepley         /* Hybrid edge:    Old and new split vertex */
1521cd0c2139SMatthew G Knepley         coneNew[0] = newp;
1522cd0c2139SMatthew G Knepley         coneNew[1] = splitp;
15239566063dSJacob Faibussowitsch         PetscCall(DMPlexSetCone(sdm, hybedge, coneNew));
15244c367dbcSMatthew G. Knepley         for (e = 0, qf = 0; e < supportSize; ++e) {
15254c367dbcSMatthew G. Knepley           PetscInt val, edge;
15264c367dbcSMatthew G. Knepley 
15279566063dSJacob Faibussowitsch           PetscCall(DMLabelGetValue(label, support[e], &val));
15284c367dbcSMatthew G. Knepley           if (val == 1) {
15299566063dSJacob Faibussowitsch             PetscCall(PetscFindInt(support[e], numSplitPoints[dep+1], splitPoints[dep+1], &edge));
153063a3b9bcSJacob Faibussowitsch             PetscCheck(edge >= 0,comm, PETSC_ERR_ARG_WRONG, "Edge %" PetscInt_FMT " is not a split edge", support[e]);
15314c367dbcSMatthew G. Knepley             supportNew[qf++] = edge + pMaxNew[dep+2] + numSplitPoints[dep+2];
15324c367dbcSMatthew G. Knepley           }
15334c367dbcSMatthew G. Knepley         }
15349566063dSJacob Faibussowitsch         PetscCall(DMPlexSetSupport(sdm, hybedge, supportNew));
1535cd0c2139SMatthew G Knepley       } else if (dep == dim-2) {
15364c367dbcSMatthew G. Knepley         const PetscInt hybface = p + pMaxNew[dep+1] + numSplitPoints[dep+1];
15374c367dbcSMatthew G. Knepley 
1538cd0c2139SMatthew G Knepley         /* Split old edge:   old vertices in cone so no change */
1539cd0c2139SMatthew G Knepley         /* Split new edge:   new vertices in cone */
1540cd0c2139SMatthew G Knepley         for (q = 0; q < coneSize; ++q) {
15419566063dSJacob Faibussowitsch           PetscCall(PetscFindInt(cone[q], numSplitPoints[dep-1], splitPoints[dep-1], &v));
1542e1757548SMatthew G. Knepley           if (v < 0) {
15439566063dSJacob Faibussowitsch             PetscCall(PetscFindInt(cone[q], numUnsplitPoints[dep-1], unsplitPoints[dep-1], &v));
154463a3b9bcSJacob Faibussowitsch             PetscCheck(v >= 0,PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Could not locate point %" PetscInt_FMT " in split or unsplit points of depth %" PetscInt_FMT, cone[q], dep-1);
15452582d50cSToby Isaac             coneNew[q] = DMPlexShiftPoint_Internal(cone[q], depth, depthShift) /*cone[q] + depthOffset[dep-1]*/;
1546e1757548SMatthew G. Knepley           } else {
15474c367dbcSMatthew G. Knepley             coneNew[q] = v + pMaxNew[dep-1];
1548cd0c2139SMatthew G Knepley           }
1549e1757548SMatthew G. Knepley         }
15509566063dSJacob Faibussowitsch         PetscCall(DMPlexSetCone(sdm, splitp, coneNew));
1551cd0c2139SMatthew G Knepley         /* Split old edge: Faces in positive side cells and old split faces */
1552cd0c2139SMatthew G Knepley         for (e = 0, q = 0; e < supportSize; ++e) {
1553cd0c2139SMatthew G Knepley           PetscInt val;
1554cd0c2139SMatthew G Knepley 
15559566063dSJacob Faibussowitsch           PetscCall(DMLabelGetValue(label, support[e], &val));
15564c367dbcSMatthew G. Knepley           if (val == dim-1) {
15572582d50cSToby Isaac             supportNew[q++] = DMPlexShiftPoint_Internal(support[e], depth, depthShift) /*support[e] + depthOffset[dep+1]*/;
15584c367dbcSMatthew G. Knepley           } else if (val == (shift + dim-1)) {
15592582d50cSToby Isaac             supportNew[q++] = DMPlexShiftPoint_Internal(support[e], depth, depthShift) /*support[e] + depthOffset[dep+1]*/;
1560cd0c2139SMatthew G Knepley           }
1561cd0c2139SMatthew G Knepley         }
1562b279cd2aSMatthew G. Knepley         supportNew[q++] = p + pMaxNew[dep+1] + numSplitPoints[dep+1];
15639566063dSJacob Faibussowitsch         PetscCall(DMPlexSetSupport(sdm, newp, supportNew));
1564cd0c2139SMatthew G Knepley         /* Split new edge: Faces in negative side cells and new split faces */
1565cd0c2139SMatthew G Knepley         for (e = 0, q = 0; e < supportSize; ++e) {
1566cd0c2139SMatthew G Knepley           PetscInt val, face;
1567cd0c2139SMatthew G Knepley 
15689566063dSJacob Faibussowitsch           PetscCall(DMLabelGetValue(label, support[e], &val));
1569cd0c2139SMatthew G Knepley           if (val == dim-1) {
15709566063dSJacob Faibussowitsch             PetscCall(PetscFindInt(support[e], numSplitPoints[dep+1], splitPoints[dep+1], &face));
157163a3b9bcSJacob Faibussowitsch             PetscCheck(face >= 0,comm, PETSC_ERR_ARG_WRONG, "Face %" PetscInt_FMT " is not a split face", support[e]);
15724c367dbcSMatthew G. Knepley             supportNew[q++] = face + pMaxNew[dep+1];
1573cd0c2139SMatthew G Knepley           } else if (val == -(shift + dim-1)) {
15742582d50cSToby Isaac             supportNew[q++] = DMPlexShiftPoint_Internal(support[e], depth, depthShift) /*support[e] + depthOffset[dep+1]*/;
1575cd0c2139SMatthew G Knepley           }
1576cd0c2139SMatthew G Knepley         }
1577b279cd2aSMatthew G. Knepley         supportNew[q++] = p + pMaxNew[dep+1] + numSplitPoints[dep+1];
15789566063dSJacob Faibussowitsch         PetscCall(DMPlexSetSupport(sdm, splitp, supportNew));
15794c367dbcSMatthew G. Knepley         /* Hybrid face */
15804c367dbcSMatthew G. Knepley         coneNew[0] = newp;
15814c367dbcSMatthew G. Knepley         coneNew[1] = splitp;
15824c367dbcSMatthew G. Knepley         for (v = 0; v < coneSize; ++v) {
15834c367dbcSMatthew G. Knepley           PetscInt vertex;
15849566063dSJacob Faibussowitsch           PetscCall(PetscFindInt(cone[v], numSplitPoints[dep-1], splitPoints[dep-1], &vertex));
1585e1757548SMatthew G. Knepley           if (vertex < 0) {
15869566063dSJacob Faibussowitsch             PetscCall(PetscFindInt(cone[v], numUnsplitPoints[dep-1], unsplitPoints[dep-1], &vertex));
158763a3b9bcSJacob Faibussowitsch             PetscCheck(vertex >= 0,PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Could not locate point %" PetscInt_FMT " in split or unsplit points of depth %" PetscInt_FMT, cone[v], dep-1);
1588e1757548SMatthew G. Knepley             coneNew[2+v] = vertex + pMaxNew[dep] + numSplitPoints[dep] + numSplitPoints[dep-1];
1589e1757548SMatthew G. Knepley           } else {
15904c367dbcSMatthew G. Knepley             coneNew[2+v] = vertex + pMaxNew[dep] + numSplitPoints[dep];
15914c367dbcSMatthew G. Knepley           }
1592e1757548SMatthew G. Knepley         }
15939566063dSJacob Faibussowitsch         PetscCall(DMPlexSetCone(sdm, hybface, coneNew));
15944c367dbcSMatthew G. Knepley         for (e = 0, qf = 0; e < supportSize; ++e) {
15954c367dbcSMatthew G. Knepley           PetscInt val, face;
15964c367dbcSMatthew G. Knepley 
15979566063dSJacob Faibussowitsch           PetscCall(DMLabelGetValue(label, support[e], &val));
15984c367dbcSMatthew G. Knepley           if (val == dim-1) {
15999566063dSJacob Faibussowitsch             PetscCall(PetscFindInt(support[e], numSplitPoints[dep+1], splitPoints[dep+1], &face));
160063a3b9bcSJacob Faibussowitsch             PetscCheck(face >= 0,comm, PETSC_ERR_ARG_WRONG, "Face %" PetscInt_FMT " is not a split face", support[e]);
16014c367dbcSMatthew G. Knepley             supportNew[qf++] = face + pMaxNew[dep+2] + numSplitPoints[dep+2];
16024c367dbcSMatthew G. Knepley           }
16034c367dbcSMatthew G. Knepley         }
16049566063dSJacob Faibussowitsch         PetscCall(DMPlexSetSupport(sdm, hybface, supportNew));
1605cd0c2139SMatthew G Knepley       }
1606cd0c2139SMatthew G Knepley     }
1607cd0c2139SMatthew G Knepley   }
160818c5995bSMatthew G. Knepley   for (dep = 0; dep <= depth; ++dep) {
160918c5995bSMatthew G. Knepley     for (p = 0; p < numUnsplitPoints[dep]; ++p) {
161018c5995bSMatthew G. Knepley       const PetscInt  oldp   = unsplitPoints[dep][p];
16112582d50cSToby Isaac       const PetscInt  newp   = DMPlexShiftPoint_Internal(oldp, depth, depthShift) /*oldp + depthOffset[dep]*/;
1612b5a892a1SMatthew G. Knepley       const PetscInt *cone, *support;
1613e1757548SMatthew G. Knepley       PetscInt        coneSize, supportSize, supportSizeNew, q, qf, e, f, s;
161418c5995bSMatthew G. Knepley 
16159566063dSJacob Faibussowitsch       PetscCall(DMPlexGetConeSize(dm, oldp, &coneSize));
16169566063dSJacob Faibussowitsch       PetscCall(DMPlexGetCone(dm, oldp, &cone));
16179566063dSJacob Faibussowitsch       PetscCall(DMPlexGetSupportSize(dm, oldp, &supportSize));
16189566063dSJacob Faibussowitsch       PetscCall(DMPlexGetSupport(dm, oldp, &support));
161918c5995bSMatthew G. Knepley       if (dep == 0) {
162018c5995bSMatthew G. Knepley         const PetscInt hybedge = p + pMaxNew[dep+1] + numSplitPoints[dep+1] + numSplitPoints[dep];
162118c5995bSMatthew G. Knepley 
162218c5995bSMatthew G. Knepley         /* Unsplit vertex */
16239566063dSJacob Faibussowitsch         PetscCall(DMPlexGetSupportSize(sdm, newp, &supportSizeNew));
162418c5995bSMatthew G. Knepley         for (s = 0, q = 0; s < supportSize; ++s) {
16252582d50cSToby Isaac           supportNew[q++] = DMPlexShiftPoint_Internal(support[s], depth, depthShift) /*support[s] + depthOffset[dep+1]*/;
16269566063dSJacob Faibussowitsch           PetscCall(PetscFindInt(support[s], numSplitPoints[dep+1], splitPoints[dep+1], &e));
162718c5995bSMatthew G. Knepley           if (e >= 0) {
162818c5995bSMatthew G. Knepley             supportNew[q++] = e + pMaxNew[dep+1];
162918c5995bSMatthew G. Knepley           }
163018c5995bSMatthew G. Knepley         }
163118c5995bSMatthew G. Knepley         supportNew[q++] = hybedge;
163218c5995bSMatthew G. Knepley         supportNew[q++] = hybedge;
163363a3b9bcSJacob Faibussowitsch         PetscCheck(q == supportSizeNew,comm, PETSC_ERR_ARG_WRONG, "Support size %" PetscInt_FMT " != %" PetscInt_FMT " for vertex %" PetscInt_FMT, q, supportSizeNew, newp);
16349566063dSJacob Faibussowitsch         PetscCall(DMPlexSetSupport(sdm, newp, supportNew));
163518c5995bSMatthew G. Knepley         /* Hybrid edge */
163618c5995bSMatthew G. Knepley         coneNew[0] = newp;
163718c5995bSMatthew G. Knepley         coneNew[1] = newp;
16389566063dSJacob Faibussowitsch         PetscCall(DMPlexSetCone(sdm, hybedge, coneNew));
163918c5995bSMatthew G. Knepley         for (e = 0, qf = 0; e < supportSize; ++e) {
164018c5995bSMatthew G. Knepley           PetscInt val, edge;
164118c5995bSMatthew G. Knepley 
16429566063dSJacob Faibussowitsch           PetscCall(DMLabelGetValue(label, support[e], &val));
164318c5995bSMatthew G. Knepley           if (val == 1) {
16449566063dSJacob Faibussowitsch             PetscCall(PetscFindInt(support[e], numSplitPoints[dep+1], splitPoints[dep+1], &edge));
164563a3b9bcSJacob Faibussowitsch             PetscCheck(edge >= 0,comm, PETSC_ERR_ARG_WRONG, "Edge %" PetscInt_FMT " is not a split edge", support[e]);
164618c5995bSMatthew G. Knepley             supportNew[qf++] = edge + pMaxNew[dep+2] + numSplitPoints[dep+2];
1647e1757548SMatthew G. Knepley           } else if  (val ==  (shift2 + 1)) {
16489566063dSJacob Faibussowitsch             PetscCall(PetscFindInt(support[e], numUnsplitPoints[dep+1], unsplitPoints[dep+1], &edge));
164963a3b9bcSJacob Faibussowitsch             PetscCheck(edge >= 0,comm, PETSC_ERR_ARG_WRONG, "Edge %" PetscInt_FMT " is not a unsplit edge", support[e]);
1650e1757548SMatthew G. Knepley             supportNew[qf++] = edge + pMaxNew[dep+2] + numSplitPoints[dep+2] + numSplitPoints[dep+1];
165118c5995bSMatthew G. Knepley           }
165218c5995bSMatthew G. Knepley         }
16539566063dSJacob Faibussowitsch         PetscCall(DMPlexSetSupport(sdm, hybedge, supportNew));
1654e1757548SMatthew G. Knepley       } else if (dep == dim-2) {
1655e1757548SMatthew G. Knepley         const PetscInt hybface = p + pMaxNew[dep+1] + numSplitPoints[dep+1] + numSplitPoints[dep];
1656e1757548SMatthew G. Knepley 
1657da1dd7e4SMatthew G. Knepley         /* Unsplit edge: Faces into original edge, split face, and hybrid face twice */
1658e1757548SMatthew G. Knepley         for (f = 0, qf = 0; f < supportSize; ++f) {
1659e1757548SMatthew G. Knepley           PetscInt val, face;
1660e1757548SMatthew G. Knepley 
16619566063dSJacob Faibussowitsch           PetscCall(DMLabelGetValue(label, support[f], &val));
1662e1757548SMatthew G. Knepley           if (val == dim-1) {
16639566063dSJacob Faibussowitsch             PetscCall(PetscFindInt(support[f], numSplitPoints[dep+1], splitPoints[dep+1], &face));
166463a3b9bcSJacob Faibussowitsch             PetscCheck(face >= 0,comm, PETSC_ERR_ARG_WRONG, "Face %" PetscInt_FMT " is not a split face", support[f]);
16652582d50cSToby Isaac             supportNew[qf++] = DMPlexShiftPoint_Internal(support[f], depth, depthShift) /*support[f] + depthOffset[dep+1]*/;
1666e1757548SMatthew G. Knepley             supportNew[qf++] = face + pMaxNew[dep+1];
1667e1757548SMatthew G. Knepley           } else {
16682582d50cSToby Isaac             supportNew[qf++] = DMPlexShiftPoint_Internal(support[f], depth, depthShift) /*support[f] + depthOffset[dep+1]*/;
1669e1757548SMatthew G. Knepley           }
1670e1757548SMatthew G. Knepley         }
1671e1757548SMatthew G. Knepley         supportNew[qf++] = hybface;
1672e1757548SMatthew G. Knepley         supportNew[qf++] = hybface;
16739566063dSJacob Faibussowitsch         PetscCall(DMPlexGetSupportSize(sdm, newp, &supportSizeNew));
167463a3b9bcSJacob Faibussowitsch         PetscCheck(qf == supportSizeNew,PETSC_COMM_SELF, PETSC_ERR_PLIB, "Support size for unsplit edge %" PetscInt_FMT " is %" PetscInt_FMT " != %" PetscInt_FMT, newp, qf, supportSizeNew);
16759566063dSJacob Faibussowitsch         PetscCall(DMPlexSetSupport(sdm, newp, supportNew));
1676e1757548SMatthew G. Knepley         /* Add hybrid face */
1677e1757548SMatthew G. Knepley         coneNew[0] = newp;
1678212cc919SMatthew G. Knepley         coneNew[1] = newp;
16799566063dSJacob Faibussowitsch         PetscCall(PetscFindInt(cone[0], numUnsplitPoints[dep-1], unsplitPoints[dep-1], &v));
168063a3b9bcSJacob Faibussowitsch         PetscCheck(v >= 0,comm, PETSC_ERR_ARG_WRONG, "Vertex %" PetscInt_FMT " is not an unsplit vertex", cone[0]);
1681212cc919SMatthew G. Knepley         coneNew[2] = v + pMaxNew[dep] + numSplitPoints[dep] + numSplitPoints[dep-1];
16829566063dSJacob Faibussowitsch         PetscCall(PetscFindInt(cone[1], numUnsplitPoints[dep-1], unsplitPoints[dep-1], &v));
168363a3b9bcSJacob Faibussowitsch         PetscCheck(v >= 0,comm, PETSC_ERR_ARG_WRONG, "Vertex %" PetscInt_FMT " is not an unsplit vertex", cone[1]);
1684e1757548SMatthew G. Knepley         coneNew[3] = v + pMaxNew[dep] + numSplitPoints[dep] + numSplitPoints[dep-1];
16859566063dSJacob Faibussowitsch         PetscCall(DMPlexSetCone(sdm, hybface, coneNew));
1686da1dd7e4SMatthew G. Knepley         for (f = 0, qf = 0; f < supportSize; ++f) {
1687da1dd7e4SMatthew G. Knepley           PetscInt val, face;
1688da1dd7e4SMatthew G. Knepley 
16899566063dSJacob Faibussowitsch           PetscCall(DMLabelGetValue(label, support[f], &val));
1690da1dd7e4SMatthew G. Knepley           if (val == dim-1) {
16919566063dSJacob Faibussowitsch             PetscCall(PetscFindInt(support[f], numSplitPoints[dep+1], splitPoints[dep+1], &face));
1692da1dd7e4SMatthew G. Knepley             supportNew[qf++] = face + pMaxNew[dep+2] + numSplitPoints[dep+2];
1693da1dd7e4SMatthew G. Knepley           }
1694da1dd7e4SMatthew G. Knepley         }
16959566063dSJacob Faibussowitsch         PetscCall(DMPlexGetSupportSize(sdm, hybface, &supportSizeNew));
169663a3b9bcSJacob Faibussowitsch         PetscCheck(qf == supportSizeNew,PETSC_COMM_SELF, PETSC_ERR_PLIB, "Support size for hybrid face %" PetscInt_FMT " is %" PetscInt_FMT " != %" PetscInt_FMT, hybface, qf, supportSizeNew);
16979566063dSJacob Faibussowitsch         PetscCall(DMPlexSetSupport(sdm, hybface, supportNew));
1698cd0c2139SMatthew G Knepley       }
1699cd0c2139SMatthew G Knepley     }
1700cd0c2139SMatthew G Knepley   }
1701cd0c2139SMatthew G Knepley   /* Step 6b: Replace split points in negative side cones */
1702cd0c2139SMatthew G Knepley   for (sp = 0; sp < numSP; ++sp) {
1703cd0c2139SMatthew G Knepley     PetscInt        dep = values[sp];
1704cd0c2139SMatthew G Knepley     IS              pIS;
1705cd0c2139SMatthew G Knepley     PetscInt        numPoints;
1706cd0c2139SMatthew G Knepley     const PetscInt *points;
1707cd0c2139SMatthew G Knepley 
1708cd0c2139SMatthew G Knepley     if (dep >= 0) continue;
17099566063dSJacob Faibussowitsch     PetscCall(DMLabelGetStratumIS(label, dep, &pIS));
1710cd0c2139SMatthew G Knepley     if (!pIS) continue;
1711cd0c2139SMatthew G Knepley     dep  = -dep - shift;
17129566063dSJacob Faibussowitsch     PetscCall(ISGetLocalSize(pIS, &numPoints));
17139566063dSJacob Faibussowitsch     PetscCall(ISGetIndices(pIS, &points));
1714cd0c2139SMatthew G Knepley     for (p = 0; p < numPoints; ++p) {
1715cd0c2139SMatthew G Knepley       const PetscInt  oldp = points[p];
17162582d50cSToby Isaac       const PetscInt  newp = DMPlexShiftPoint_Internal(oldp, depth, depthShift) /*depthOffset[dep] + oldp*/;
1717cd0c2139SMatthew G Knepley       const PetscInt *cone;
1718cd0c2139SMatthew G Knepley       PetscInt        coneSize, c;
171950cf782dSMatthew G. Knepley       /* PetscBool       replaced = PETSC_FALSE; */
1720cd0c2139SMatthew G Knepley 
1721cd0c2139SMatthew G Knepley       /* Negative edge: replace split vertex */
1722cd0c2139SMatthew G Knepley       /* Negative cell: replace split face */
17239566063dSJacob Faibussowitsch       PetscCall(DMPlexGetConeSize(sdm, newp, &coneSize));
17249566063dSJacob Faibussowitsch       PetscCall(DMPlexGetCone(sdm, newp, &cone));
1725cd0c2139SMatthew G Knepley       for (c = 0; c < coneSize; ++c) {
1726e38fbfedSToby Isaac         const PetscInt coldp = DMPlexShiftPointInverse_Internal(cone[c],depth,depthShift);
1727cd0c2139SMatthew G Knepley         PetscInt       csplitp, cp, val;
1728cd0c2139SMatthew G Knepley 
17299566063dSJacob Faibussowitsch         PetscCall(DMLabelGetValue(label, coldp, &val));
1730cd0c2139SMatthew G Knepley         if (val == dep-1) {
17319566063dSJacob Faibussowitsch           PetscCall(PetscFindInt(coldp, numSplitPoints[dep-1], splitPoints[dep-1], &cp));
173263a3b9bcSJacob Faibussowitsch           PetscCheck(cp >= 0,comm, PETSC_ERR_ARG_WRONG, "Point %" PetscInt_FMT " is not a split point of dimension %" PetscInt_FMT, oldp, dep-1);
1733cd0c2139SMatthew G Knepley           csplitp  = pMaxNew[dep-1] + cp;
17349566063dSJacob Faibussowitsch           PetscCall(DMPlexInsertCone(sdm, newp, c, csplitp));
173550cf782dSMatthew G. Knepley           /* replaced = PETSC_TRUE; */
1736cd0c2139SMatthew G Knepley         }
1737cd0c2139SMatthew G Knepley       }
17384a189a86SMatthew G. Knepley       /* Cells with only a vertex or edge on the submesh have no replacement */
173928b400f6SJacob Faibussowitsch       /* PetscCheck(replaced,comm, PETSC_ERR_ARG_WRONG, "The cone of point %d does not contain split points", oldp); */
1740cd0c2139SMatthew G Knepley     }
17419566063dSJacob Faibussowitsch     PetscCall(ISRestoreIndices(pIS, &points));
17429566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&pIS));
1743cd0c2139SMatthew G Knepley   }
1744fa8e8ae5SToby Isaac   /* Step 7: Coordinates */
17459566063dSJacob Faibussowitsch   PetscCall(DMPlexShiftCoordinates_Internal(dm, depthShift, sdm));
17469566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateSection(sdm, &coordSection));
17479566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinatesLocal(sdm, &coordinates));
17489566063dSJacob Faibussowitsch   PetscCall(VecGetArray(coordinates, &coords));
1749cd0c2139SMatthew G Knepley   for (v = 0; v < (numSplitPoints ? numSplitPoints[0] : 0); ++v) {
17502582d50cSToby Isaac     const PetscInt newp   = DMPlexShiftPoint_Internal(splitPoints[0][v], depth, depthShift) /*depthOffset[0] + splitPoints[0][v]*/;
1751cd0c2139SMatthew G Knepley     const PetscInt splitp = pMaxNew[0] + v;
1752cd0c2139SMatthew G Knepley     PetscInt       dof, off, soff, d;
1753cd0c2139SMatthew G Knepley 
17549566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetDof(coordSection, newp, &dof));
17559566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetOffset(coordSection, newp, &off));
17569566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetOffset(coordSection, splitp, &soff));
1757cd0c2139SMatthew G Knepley     for (d = 0; d < dof; ++d) coords[soff+d] = coords[off+d];
1758cd0c2139SMatthew G Knepley   }
17599566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(coordinates, &coords));
1760fa8e8ae5SToby Isaac   /* Step 8: SF, if I can figure this out we can split the mesh in parallel */
17619566063dSJacob Faibussowitsch   PetscCall(DMPlexShiftSF_Internal(dm, depthShift, sdm));
1762b6dfa339SMatthew G. Knepley   /*   TODO We need to associate the ghost points with the correct replica */
1763fa8e8ae5SToby Isaac   /* Step 9: Labels */
17649566063dSJacob Faibussowitsch   PetscCall(DMPlexShiftLabels_Internal(dm, depthShift, sdm));
17659566063dSJacob Faibussowitsch   PetscCall(DMPlexCreateVTKLabel_Internal(dm, PETSC_FALSE, sdm));
17669566063dSJacob Faibussowitsch   PetscCall(DMGetNumLabels(sdm, &numLabels));
1767cd0c2139SMatthew G Knepley   for (dep = 0; dep <= depth; ++dep) {
1768cd0c2139SMatthew G Knepley     for (p = 0; p < numSplitPoints[dep]; ++p) {
17692582d50cSToby Isaac       const PetscInt newp   = DMPlexShiftPoint_Internal(splitPoints[dep][p], depth, depthShift) /*depthOffset[dep] + splitPoints[dep][p]*/;
1770cd0c2139SMatthew G Knepley       const PetscInt splitp = pMaxNew[dep] + p;
1771cd0c2139SMatthew G Knepley       PetscInt       l;
1772cd0c2139SMatthew G Knepley 
17737db7e0a7SMatthew G. Knepley       if (splitLabel) {
17747db7e0a7SMatthew G. Knepley         const PetscInt val = 100 + dep;
17757db7e0a7SMatthew G. Knepley 
17769566063dSJacob Faibussowitsch         PetscCall(DMLabelSetValue(splitLabel, newp,    val));
17779566063dSJacob Faibussowitsch         PetscCall(DMLabelSetValue(splitLabel, splitp, -val));
17787db7e0a7SMatthew G. Knepley       }
1779cd0c2139SMatthew G Knepley       for (l = 0; l < numLabels; ++l) {
1780cd0c2139SMatthew G Knepley         DMLabel     mlabel;
1781cd0c2139SMatthew G Knepley         const char *lname;
1782cd0c2139SMatthew G Knepley         PetscInt    val;
17839a356370SMatthew G. Knepley         PetscBool   isDepth;
1784cd0c2139SMatthew G Knepley 
17859566063dSJacob Faibussowitsch         PetscCall(DMGetLabelName(sdm, l, &lname));
17869566063dSJacob Faibussowitsch         PetscCall(PetscStrcmp(lname, "depth", &isDepth));
17879a356370SMatthew G. Knepley         if (isDepth) continue;
17889566063dSJacob Faibussowitsch         PetscCall(DMGetLabel(sdm, lname, &mlabel));
17899566063dSJacob Faibussowitsch         PetscCall(DMLabelGetValue(mlabel, newp, &val));
1790cd0c2139SMatthew G Knepley         if (val >= 0) {
17919566063dSJacob Faibussowitsch           PetscCall(DMLabelSetValue(mlabel, splitp, val));
1792cd0c2139SMatthew G Knepley         }
1793cd0c2139SMatthew G Knepley       }
1794cd0c2139SMatthew G Knepley     }
1795cd0c2139SMatthew G Knepley   }
1796cd0c2139SMatthew G Knepley   for (sp = 0; sp < numSP; ++sp) {
1797cd0c2139SMatthew G Knepley     const PetscInt dep = values[sp];
1798cd0c2139SMatthew G Knepley 
1799cd0c2139SMatthew G Knepley     if ((dep < 0) || (dep > depth)) continue;
18009566063dSJacob Faibussowitsch     if (splitIS[dep]) PetscCall(ISRestoreIndices(splitIS[dep], &splitPoints[dep]));
18019566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&splitIS[dep]));
18029566063dSJacob Faibussowitsch     if (unsplitIS[dep]) PetscCall(ISRestoreIndices(unsplitIS[dep], &unsplitPoints[dep]));
18039566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&unsplitIS[dep]));
1804cd0c2139SMatthew G Knepley   }
1805b6dfa339SMatthew G. Knepley   if (ghostIS) PetscCall(ISRestoreIndices(ghostIS, &ghostPoints));
1806b6dfa339SMatthew G. Knepley   PetscCall(ISDestroy(&ghostIS));
1807cd0c2139SMatthew G Knepley   if (label) {
18089566063dSJacob Faibussowitsch     PetscCall(ISRestoreIndices(valueIS, &values));
18099566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&valueIS));
1810cd0c2139SMatthew G Knepley   }
18110d4d4d06SMatthew G. Knepley   for (d = 0; d <= depth; ++d) {
18129566063dSJacob Faibussowitsch     PetscCall(DMPlexGetDepthStratum(sdm, d, NULL, &pEnd));
181336dbac82SMatthew G. Knepley     pMaxNew[d] = pEnd - numHybridPoints[d] - numHybridPointsOld[d];
18140d4d4d06SMatthew G. Knepley   }
18159566063dSJacob Faibussowitsch   PetscCall(PetscFree3(coneNew, coneONew, supportNew));
18169566063dSJacob Faibussowitsch   PetscCall(PetscFree5(depthMax, depthEnd, depthShift, pMaxNew, numHybridPointsOld));
18179566063dSJacob Faibussowitsch   PetscCall(PetscFree7(splitIS, unsplitIS, numSplitPoints, numUnsplitPoints, numHybridPoints, splitPoints, unsplitPoints));
1818cd0c2139SMatthew G Knepley   PetscFunctionReturn(0);
1819cd0c2139SMatthew G Knepley }
1820cd0c2139SMatthew G Knepley 
1821cd0c2139SMatthew G Knepley /*@C
1822cd0c2139SMatthew G Knepley   DMPlexConstructCohesiveCells - Construct cohesive cells which split the face along an internal interface
1823cd0c2139SMatthew G Knepley 
1824cd0c2139SMatthew G Knepley   Collective on dm
1825cd0c2139SMatthew G Knepley 
1826cd0c2139SMatthew G Knepley   Input Parameters:
1827cd0c2139SMatthew G Knepley + dm - The original DM
182853156dfcSMatthew G. Knepley - label - The label specifying the boundary faces (this could be auto-generated)
1829cd0c2139SMatthew G Knepley 
1830cd0c2139SMatthew G Knepley   Output Parameters:
18317db7e0a7SMatthew G. Knepley + splitLabel - The label containing the split points, or NULL if no output is desired
1832cd0c2139SMatthew G Knepley - dmSplit - The new DM
1833cd0c2139SMatthew G Knepley 
1834cd0c2139SMatthew G Knepley   Level: developer
1835cd0c2139SMatthew G Knepley 
1836db781477SPatrick Sanan .seealso: `DMCreate()`, `DMPlexLabelCohesiveComplete()`
1837cd0c2139SMatthew G Knepley @*/
18387db7e0a7SMatthew G. Knepley PetscErrorCode DMPlexConstructCohesiveCells(DM dm, DMLabel label, DMLabel splitLabel, DM *dmSplit)
1839cd0c2139SMatthew G Knepley {
1840cd0c2139SMatthew G Knepley   DM             sdm;
1841cd0c2139SMatthew G Knepley   PetscInt       dim;
1842cd0c2139SMatthew G Knepley 
1843cd0c2139SMatthew G Knepley   PetscFunctionBegin;
1844cd0c2139SMatthew G Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
1845064a246eSJacob Faibussowitsch   PetscValidPointer(dmSplit, 4);
18469566063dSJacob Faibussowitsch   PetscCall(DMCreate(PetscObjectComm((PetscObject)dm), &sdm));
18479566063dSJacob Faibussowitsch   PetscCall(DMSetType(sdm, DMPLEX));
18489566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dm, &dim));
18499566063dSJacob Faibussowitsch   PetscCall(DMSetDimension(sdm, dim));
1850cd0c2139SMatthew G Knepley   switch (dim) {
1851cd0c2139SMatthew G Knepley   case 2:
1852cd0c2139SMatthew G Knepley   case 3:
18539566063dSJacob Faibussowitsch     PetscCall(DMPlexConstructCohesiveCells_Internal(dm, label, splitLabel, sdm));
1854cd0c2139SMatthew G Knepley     break;
1855cd0c2139SMatthew G Knepley   default:
185663a3b9bcSJacob Faibussowitsch     SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Cannot construct cohesive cells for dimension %" PetscInt_FMT, dim);
1857cd0c2139SMatthew G Knepley   }
1858cd0c2139SMatthew G Knepley   *dmSplit = sdm;
1859cd0c2139SMatthew G Knepley   PetscFunctionReturn(0);
1860cd0c2139SMatthew G Knepley }
1861cd0c2139SMatthew G Knepley 
18620f66a230SMatthew G. Knepley /* Returns the side of the surface for a given cell with a face on the surface */
18630f66a230SMatthew G. Knepley static PetscErrorCode GetSurfaceSide_Static(DM dm, DM subdm, PetscInt numSubpoints, const PetscInt *subpoints, PetscInt cell, PetscInt face, PetscBool *pos)
18640f66a230SMatthew G. Knepley {
18650f66a230SMatthew G. Knepley   const PetscInt *cone, *ornt;
18660f66a230SMatthew G. Knepley   PetscInt        dim, coneSize, c;
18670f66a230SMatthew G. Knepley 
18680f66a230SMatthew G. Knepley   PetscFunctionBegin;
18690f66a230SMatthew G. Knepley   *pos = PETSC_TRUE;
18709566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dm, &dim));
18719566063dSJacob Faibussowitsch   PetscCall(DMPlexGetConeSize(dm, cell, &coneSize));
18729566063dSJacob Faibussowitsch   PetscCall(DMPlexGetCone(dm, cell, &cone));
18739566063dSJacob Faibussowitsch   PetscCall(DMPlexGetConeOrientation(dm, cell, &ornt));
18740f66a230SMatthew G. Knepley   for (c = 0; c < coneSize; ++c) {
18750f66a230SMatthew G. Knepley     if (cone[c] == face) {
18760f66a230SMatthew G. Knepley       PetscInt o = ornt[c];
18770f66a230SMatthew G. Knepley 
18780f66a230SMatthew G. Knepley       if (subdm) {
18790f66a230SMatthew G. Knepley         const PetscInt *subcone, *subornt;
18800f66a230SMatthew G. Knepley         PetscInt        subpoint, subface, subconeSize, sc;
18810f66a230SMatthew G. Knepley 
18829566063dSJacob Faibussowitsch         PetscCall(PetscFindInt(cell, numSubpoints, subpoints, &subpoint));
18839566063dSJacob Faibussowitsch         PetscCall(PetscFindInt(face, numSubpoints, subpoints, &subface));
18849566063dSJacob Faibussowitsch         PetscCall(DMPlexGetConeSize(subdm, subpoint, &subconeSize));
18859566063dSJacob Faibussowitsch         PetscCall(DMPlexGetCone(subdm, subpoint, &subcone));
18869566063dSJacob Faibussowitsch         PetscCall(DMPlexGetConeOrientation(subdm, subpoint, &subornt));
18870f66a230SMatthew G. Knepley         for (sc = 0; sc < subconeSize; ++sc) {
18880f66a230SMatthew G. Knepley           if (subcone[sc] == subface) {
18890f66a230SMatthew G. Knepley             o = subornt[0];
18900f66a230SMatthew G. Knepley             break;
18910f66a230SMatthew G. Knepley           }
18920f66a230SMatthew G. Knepley         }
189363a3b9bcSJacob Faibussowitsch         PetscCheck(sc < subconeSize,PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Could not find subpoint %" PetscInt_FMT " (%" PetscInt_FMT ") in cone for subpoint %" PetscInt_FMT " (%" PetscInt_FMT ")", subface, face, subpoint, cell);
18940f66a230SMatthew G. Knepley       }
18950f66a230SMatthew G. Knepley       if (o >= 0) *pos = PETSC_TRUE;
18960f66a230SMatthew G. Knepley       else        *pos = PETSC_FALSE;
18970f66a230SMatthew G. Knepley       break;
18980f66a230SMatthew G. Knepley     }
18990f66a230SMatthew G. Knepley   }
190063a3b9bcSJacob Faibussowitsch   PetscCheck(c != coneSize,PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Cell %" PetscInt_FMT " in split face %" PetscInt_FMT " support does not have it in the cone", cell, face);
19010f66a230SMatthew G. Knepley   PetscFunctionReturn(0);
19020f66a230SMatthew G. Knepley }
19030f66a230SMatthew G. Knepley 
1904accc9626SMatthew G. Knepley static PetscErrorCode CheckFaultEdge_Private(DM dm, DMLabel label)
1905accc9626SMatthew G. Knepley {
1906accc9626SMatthew G. Knepley   IS              facePosIS, faceNegIS, dimIS;
1907accc9626SMatthew G. Knepley   const PetscInt *points;
1908accc9626SMatthew G. Knepley   PetscInt        dim, numPoints, p, shift = 100, shift2 = 200;
1909accc9626SMatthew G. Knepley 
1910accc9626SMatthew G. Knepley   PetscFunctionBegin;
1911accc9626SMatthew G. Knepley   PetscCall(DMGetDimension(dm, &dim));
1912accc9626SMatthew G. Knepley   /* If any faces touching the fault divide cells on either side, split them */
1913accc9626SMatthew G. Knepley   PetscCall(DMLabelGetStratumIS(label,   shift+dim-1,  &facePosIS));
1914accc9626SMatthew G. Knepley   PetscCall(DMLabelGetStratumIS(label, -(shift+dim-1), &faceNegIS));
1915accc9626SMatthew G. Knepley   if (!facePosIS || !faceNegIS) {
1916accc9626SMatthew G. Knepley     PetscCall(ISDestroy(&facePosIS));
1917accc9626SMatthew G. Knepley     PetscCall(ISDestroy(&faceNegIS));
1918accc9626SMatthew G. Knepley     PetscFunctionReturn(0);
1919accc9626SMatthew G. Knepley   }
1920accc9626SMatthew G. Knepley   PetscCall(ISExpand(facePosIS, faceNegIS, &dimIS));
1921accc9626SMatthew G. Knepley   PetscCall(ISDestroy(&facePosIS));
1922accc9626SMatthew G. Knepley   PetscCall(ISDestroy(&faceNegIS));
1923accc9626SMatthew G. Knepley   PetscCall(ISGetLocalSize(dimIS, &numPoints));
1924accc9626SMatthew G. Knepley   PetscCall(ISGetIndices(dimIS, &points));
1925accc9626SMatthew G. Knepley   for (p = 0; p < numPoints; ++p) {
1926accc9626SMatthew G. Knepley     const PetscInt  point = points[p];
1927accc9626SMatthew G. Knepley     const PetscInt *support;
1928accc9626SMatthew G. Knepley     PetscInt        supportSize, valA, valB;
1929accc9626SMatthew G. Knepley 
1930accc9626SMatthew G. Knepley     PetscCall(DMPlexGetSupportSize(dm, point, &supportSize));
1931accc9626SMatthew G. Knepley     if (supportSize != 2) continue;
1932accc9626SMatthew G. Knepley     PetscCall(DMPlexGetSupport(dm, point, &support));
1933accc9626SMatthew G. Knepley     PetscCall(DMLabelGetValue(label, support[0], &valA));
1934accc9626SMatthew G. Knepley     PetscCall(DMLabelGetValue(label, support[1], &valB));
1935accc9626SMatthew G. Knepley     if ((valA == -1) || (valB == -1)) continue;
1936accc9626SMatthew G. Knepley     if (valA*valB > 0) continue;
1937e1a13daeSMatthew G. Knepley     /* Check that this face is not incident on only unsplit faces, meaning has at least one split face */
1938e1a13daeSMatthew G. Knepley     {
1939e1a13daeSMatthew G. Knepley       PetscInt *closure = NULL;
1940e1a13daeSMatthew G. Knepley       PetscBool split   = PETSC_FALSE;
1941e1a13daeSMatthew G. Knepley       PetscInt  closureSize, cl;
1942e1a13daeSMatthew G. Knepley 
1943e1a13daeSMatthew G. Knepley       PetscCall(DMPlexGetTransitiveClosure(dm, point, PETSC_TRUE, &closureSize, &closure));
1944e1a13daeSMatthew G. Knepley       for (cl = 0; cl < closureSize*2; cl += 2) {
1945e1a13daeSMatthew G. Knepley         PetscCall(DMLabelGetValue(label, closure[cl], &valA));
1946e1a13daeSMatthew G. Knepley         if ((valA >= 0) && (valA <= dim)) {split = PETSC_TRUE; break;}
1947e1a13daeSMatthew G. Knepley       }
1948e1a13daeSMatthew G. Knepley       PetscCall(DMPlexRestoreTransitiveClosure(dm, point, PETSC_TRUE, &closureSize, &closure));
1949e1a13daeSMatthew G. Knepley       if (!split) continue;
1950e1a13daeSMatthew G. Knepley     }
1951accc9626SMatthew G. Knepley     /* Split the face */
1952accc9626SMatthew G. Knepley     PetscCall(DMLabelGetValue(label, point, &valA));
1953accc9626SMatthew G. Knepley     PetscCall(DMLabelClearValue(label, point, valA));
1954accc9626SMatthew G. Knepley     PetscCall(DMLabelSetValue(label, point, dim-1));
1955accc9626SMatthew G. Knepley     /* Label its closure:
1956accc9626SMatthew G. Knepley       unmarked: label as unsplit
1957accc9626SMatthew G. Knepley       incident: relabel as split
1958accc9626SMatthew G. Knepley       split:    do nothing
1959accc9626SMatthew G. Knepley     */
1960accc9626SMatthew G. Knepley     {
1961accc9626SMatthew G. Knepley       PetscInt *closure = NULL;
1962accc9626SMatthew G. Knepley       PetscInt  closureSize, cl, dep;
1963accc9626SMatthew G. Knepley 
1964accc9626SMatthew G. Knepley       PetscCall(DMPlexGetTransitiveClosure(dm, point, PETSC_TRUE, &closureSize, &closure));
1965accc9626SMatthew G. Knepley       for (cl = 0; cl < closureSize*2; cl += 2) {
1966accc9626SMatthew G. Knepley         PetscCall(DMLabelGetValue(label, closure[cl], &valA));
1967accc9626SMatthew G. Knepley         if (valA == -1) { /* Mark as unsplit */
1968accc9626SMatthew G. Knepley           PetscCall(DMPlexGetPointDepth(dm, closure[cl], &dep));
1969accc9626SMatthew G. Knepley           PetscCall(DMLabelSetValue(label, closure[cl], shift2+dep));
1970accc9626SMatthew G. Knepley         } else if (((valA >= shift) && (valA < shift2)) || ((valA <= -shift) && (valA > -shift2))) {
1971accc9626SMatthew G. Knepley           PetscCall(DMPlexGetPointDepth(dm, closure[cl], &dep));
1972accc9626SMatthew G. Knepley           PetscCall(DMLabelClearValue(label, closure[cl], valA));
1973accc9626SMatthew G. Knepley           PetscCall(DMLabelSetValue(label, closure[cl], dep));
1974accc9626SMatthew G. Knepley         }
1975accc9626SMatthew G. Knepley       }
1976accc9626SMatthew G. Knepley       PetscCall(DMPlexRestoreTransitiveClosure(dm, point, PETSC_TRUE, &closureSize, &closure));
1977accc9626SMatthew G. Knepley     }
1978accc9626SMatthew G. Knepley   }
1979accc9626SMatthew G. Knepley   PetscCall(ISRestoreIndices(dimIS, &points));
1980accc9626SMatthew G. Knepley   PetscCall(ISDestroy(&dimIS));
1981accc9626SMatthew G. Knepley   PetscFunctionReturn(0);
1982accc9626SMatthew G. Knepley }
1983accc9626SMatthew G. Knepley 
1984cd0c2139SMatthew G Knepley /*@
19850f66a230SMatthew G. Knepley   DMPlexLabelCohesiveComplete - Starting with a label marking points on an internal surface, we add all other mesh pieces
1986cd0c2139SMatthew G Knepley   to complete the surface
1987cd0c2139SMatthew G Knepley 
1988cd0c2139SMatthew G Knepley   Input Parameters:
1989cd0c2139SMatthew G Knepley + dm     - The DM
19900f66a230SMatthew G. Knepley . label  - A DMLabel marking the surface
19910f66a230SMatthew G. Knepley . blabel - A DMLabel marking the vertices on the boundary which will not be duplicated, or NULL to find them automatically
1992caf9e14dSMatthew G. Knepley . bvalue - Value of DMLabel marking the vertices on the boundary
1993bb55d314SMatthew G. Knepley . flip   - Flag to flip the submesh normal and replace points on the other side
199447946fd8SMatthew G. Knepley - subdm  - The subDM associated with the label, or NULL
1995cd0c2139SMatthew G Knepley 
1996cd0c2139SMatthew G Knepley   Output Parameter:
1997cd0c2139SMatthew G Knepley . label - A DMLabel marking all surface points
1998cd0c2139SMatthew G Knepley 
19990f66a230SMatthew G. Knepley   Note: The vertices in blabel are called "unsplit" in the terminology from hybrid cell creation.
20000f66a230SMatthew G. Knepley 
2001cd0c2139SMatthew G Knepley   Level: developer
2002cd0c2139SMatthew G Knepley 
2003db781477SPatrick Sanan .seealso: `DMPlexConstructCohesiveCells()`, `DMPlexLabelComplete()`
2004cd0c2139SMatthew G Knepley @*/
2005caf9e14dSMatthew G. Knepley PetscErrorCode DMPlexLabelCohesiveComplete(DM dm, DMLabel label, DMLabel blabel, PetscInt bvalue, PetscBool flip, DM subdm)
2006cd0c2139SMatthew G Knepley {
2007d90583fdSMatthew G. Knepley   DMLabel         depthLabel;
2008accc9626SMatthew G. Knepley   IS              dimIS, subpointIS = NULL;
200947946fd8SMatthew G. Knepley   const PetscInt *points, *subpoints;
2010bb55d314SMatthew G. Knepley   const PetscInt  rev   = flip ? -1 : 1;
2011accc9626SMatthew G. Knepley   PetscInt        shift = 100, shift2 = 200, shift3 = 300, dim, depth, numPoints, numSubpoints, p, val;
2012cd0c2139SMatthew G Knepley 
2013cd0c2139SMatthew G Knepley   PetscFunctionBegin;
20149566063dSJacob Faibussowitsch   PetscCall(DMPlexGetDepth(dm, &depth));
20159566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dm, &dim));
20169566063dSJacob Faibussowitsch   PetscCall(DMPlexGetDepthLabel(dm, &depthLabel));
201747946fd8SMatthew G. Knepley   if (subdm) {
20189566063dSJacob Faibussowitsch     PetscCall(DMPlexGetSubpointIS(subdm, &subpointIS));
201947946fd8SMatthew G. Knepley     if (subpointIS) {
20209566063dSJacob Faibussowitsch       PetscCall(ISGetLocalSize(subpointIS, &numSubpoints));
20219566063dSJacob Faibussowitsch       PetscCall(ISGetIndices(subpointIS, &subpoints));
202247946fd8SMatthew G. Knepley     }
202347946fd8SMatthew G. Knepley   }
2024d7c8f101SMatthew G. Knepley   /* Mark cell on the fault, and its faces which touch the fault: cell orientation for face gives the side of the fault */
20259566063dSJacob Faibussowitsch   PetscCall(DMLabelGetStratumIS(label, dim-1, &dimIS));
2026accc9626SMatthew G. Knepley   if (!dimIS) goto divide;
20279566063dSJacob Faibussowitsch   PetscCall(ISGetLocalSize(dimIS, &numPoints));
20289566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(dimIS, &points));
2029d7c8f101SMatthew G. Knepley   for (p = 0; p < numPoints; ++p) { /* Loop over fault faces */
2030cd0c2139SMatthew G Knepley     const PetscInt *support;
2031cd0c2139SMatthew G Knepley     PetscInt        supportSize, s;
2032cd0c2139SMatthew G Knepley 
20339566063dSJacob Faibussowitsch     PetscCall(DMPlexGetSupportSize(dm, points[p], &supportSize));
2034c4419245SMatthew G. Knepley #if 0
2035c4419245SMatthew G. Knepley     if (supportSize != 2) {
2036c4419245SMatthew G. Knepley       const PetscInt *lp;
2037c4419245SMatthew G. Knepley       PetscInt        Nlp, pind;
2038c4419245SMatthew G. Knepley 
2039c4419245SMatthew G. Knepley       /* Check that for a cell with a single support face, that face is in the SF */
2040c4419245SMatthew G. Knepley       /*   THis check only works for the remote side. We would need root side information */
20419566063dSJacob Faibussowitsch       PetscCall(PetscSFGetGraph(dm->sf, NULL, &Nlp, &lp, NULL));
20429566063dSJacob Faibussowitsch       PetscCall(PetscFindInt(points[p], Nlp, lp, &pind));
204363a3b9bcSJacob Faibussowitsch       PetscCheck(pind >= 0,PetscObjectComm((PetscObject) dm), PETSC_ERR_ARG_WRONG, "Split face %" PetscInt_FMT " has %" PetscInt_FMT " != 2 supports, and the face is not shared with another process", points[p], supportSize);
2044c4419245SMatthew G. Knepley     }
2045c4419245SMatthew G. Knepley #endif
20469566063dSJacob Faibussowitsch     PetscCall(DMPlexGetSupport(dm, points[p], &support));
2047cd0c2139SMatthew G Knepley     for (s = 0; s < supportSize; ++s) {
20480f66a230SMatthew G. Knepley       const PetscInt *cone;
2049cd0c2139SMatthew G Knepley       PetscInt        coneSize, c;
20500f66a230SMatthew G. Knepley       PetscBool       pos;
2051cd0c2139SMatthew G Knepley 
20529566063dSJacob Faibussowitsch       PetscCall(GetSurfaceSide_Static(dm, subdm, numSubpoints, subpoints, support[s], points[p], &pos));
20539566063dSJacob Faibussowitsch       if (pos) PetscCall(DMLabelSetValue(label, support[s],  rev*(shift+dim)));
20549566063dSJacob Faibussowitsch       else     PetscCall(DMLabelSetValue(label, support[s], -rev*(shift+dim)));
20550f66a230SMatthew G. Knepley       if (rev < 0) pos = !pos ? PETSC_TRUE : PETSC_FALSE;
20560f66a230SMatthew G. Knepley       /* Put faces touching the fault in the label */
20579566063dSJacob Faibussowitsch       PetscCall(DMPlexGetConeSize(dm, support[s], &coneSize));
20589566063dSJacob Faibussowitsch       PetscCall(DMPlexGetCone(dm, support[s], &cone));
2059cd0c2139SMatthew G Knepley       for (c = 0; c < coneSize; ++c) {
2060cd0c2139SMatthew G Knepley         const PetscInt point = cone[c];
2061cd0c2139SMatthew G Knepley 
20629566063dSJacob Faibussowitsch         PetscCall(DMLabelGetValue(label, point, &val));
2063cd0c2139SMatthew G Knepley         if (val == -1) {
2064cd0c2139SMatthew G Knepley           PetscInt *closure = NULL;
2065cd0c2139SMatthew G Knepley           PetscInt  closureSize, cl;
2066cd0c2139SMatthew G Knepley 
20679566063dSJacob Faibussowitsch           PetscCall(DMPlexGetTransitiveClosure(dm, point, PETSC_TRUE, &closureSize, &closure));
2068cd0c2139SMatthew G Knepley           for (cl = 0; cl < closureSize*2; cl += 2) {
2069cd0c2139SMatthew G Knepley             const PetscInt clp  = closure[cl];
2070a0541d8aSMatthew G. Knepley             PetscInt       bval = -1;
2071cd0c2139SMatthew G Knepley 
20729566063dSJacob Faibussowitsch             PetscCall(DMLabelGetValue(label, clp, &val));
20739566063dSJacob Faibussowitsch             if (blabel) PetscCall(DMLabelGetValue(blabel, clp, &bval));
2074a0541d8aSMatthew G. Knepley             if ((val >= 0) && (val < dim-1) && (bval < 0)) {
20759566063dSJacob Faibussowitsch               PetscCall(DMLabelSetValue(label, point, pos == PETSC_TRUE ? shift+dim-1 : -(shift+dim-1)));
2076cd0c2139SMatthew G Knepley               break;
2077cd0c2139SMatthew G Knepley             }
2078cd0c2139SMatthew G Knepley           }
20799566063dSJacob Faibussowitsch           PetscCall(DMPlexRestoreTransitiveClosure(dm, point, PETSC_TRUE, &closureSize, &closure));
2080cd0c2139SMatthew G Knepley         }
2081cd0c2139SMatthew G Knepley       }
2082cd0c2139SMatthew G Knepley     }
2083cd0c2139SMatthew G Knepley   }
2084accc9626SMatthew G. Knepley   PetscCall(ISRestoreIndices(dimIS, &points));
2085accc9626SMatthew G. Knepley   PetscCall(ISDestroy(&dimIS));
2086a0541d8aSMatthew G. Knepley   /* Mark boundary points as unsplit */
208786200784SMatthew G. Knepley   if (blabel) {
2088accc9626SMatthew G. Knepley     IS bdIS;
2089accc9626SMatthew G. Knepley 
2090caf9e14dSMatthew G. Knepley     PetscCall(DMLabelGetStratumIS(blabel, bvalue, &bdIS));
2091accc9626SMatthew G. Knepley     PetscCall(ISGetLocalSize(bdIS, &numPoints));
2092accc9626SMatthew G. Knepley     PetscCall(ISGetIndices(bdIS, &points));
2093a0541d8aSMatthew G. Knepley     for (p = 0; p < numPoints; ++p) {
2094a0541d8aSMatthew G. Knepley       const PetscInt point = points[p];
2095a0541d8aSMatthew G. Knepley       PetscInt       val, bval;
2096a0541d8aSMatthew G. Knepley 
20979566063dSJacob Faibussowitsch       PetscCall(DMLabelGetValue(blabel, point, &bval));
2098a0541d8aSMatthew G. Knepley       if (bval >= 0) {
20999566063dSJacob Faibussowitsch         PetscCall(DMLabelGetValue(label, point, &val));
2100f7019248SMatthew G. Knepley         if ((val < 0) || (val > dim)) {
2101f7019248SMatthew G. Knepley           /* This could be a point added from splitting a vertex on an adjacent fault, otherwise its just wrong */
21029566063dSJacob Faibussowitsch           PetscCall(DMLabelClearValue(blabel, point, bval));
2103f7019248SMatthew G. Knepley         }
2104f7019248SMatthew G. Knepley       }
2105f7019248SMatthew G. Knepley     }
2106f7019248SMatthew G. Knepley     for (p = 0; p < numPoints; ++p) {
2107f7019248SMatthew G. Knepley       const PetscInt point = points[p];
2108f7019248SMatthew G. Knepley       PetscInt       val, bval;
2109f7019248SMatthew G. Knepley 
21109566063dSJacob Faibussowitsch       PetscCall(DMLabelGetValue(blabel, point, &bval));
2111f7019248SMatthew G. Knepley       if (bval >= 0) {
211286200784SMatthew G. Knepley         const PetscInt *cone,    *support;
211386200784SMatthew G. Knepley         PetscInt        coneSize, supportSize, s, valA, valB, valE;
211486200784SMatthew G. Knepley 
2115a0541d8aSMatthew G. Knepley         /* Mark as unsplit */
21169566063dSJacob Faibussowitsch         PetscCall(DMLabelGetValue(label, point, &val));
2117e1a13daeSMatthew G. Knepley         PetscCheck(val >= 0 && val <= dim, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Point %" PetscInt_FMT " has label value %" PetscInt_FMT ", should be part of the fault", point, val);
21189566063dSJacob Faibussowitsch         PetscCall(DMLabelClearValue(label, point, val));
21199566063dSJacob Faibussowitsch         PetscCall(DMLabelSetValue(label, point, shift2+val));
21202c06a818SMatthew G. Knepley         /* Check for cross-edge
21212c06a818SMatthew G. Knepley              A cross-edge has endpoints which are both on the boundary of the surface, but the edge itself is not. */
212286200784SMatthew G. Knepley         if (val != 0) continue;
21239566063dSJacob Faibussowitsch         PetscCall(DMPlexGetSupport(dm, point, &support));
21249566063dSJacob Faibussowitsch         PetscCall(DMPlexGetSupportSize(dm, point, &supportSize));
212586200784SMatthew G. Knepley         for (s = 0; s < supportSize; ++s) {
21269566063dSJacob Faibussowitsch           PetscCall(DMPlexGetCone(dm, support[s], &cone));
21279566063dSJacob Faibussowitsch           PetscCall(DMPlexGetConeSize(dm, support[s], &coneSize));
212863a3b9bcSJacob Faibussowitsch           PetscCheck(coneSize == 2, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Edge %" PetscInt_FMT " has %" PetscInt_FMT " vertices != 2", support[s], coneSize);
21299566063dSJacob Faibussowitsch           PetscCall(DMLabelGetValue(blabel, cone[0], &valA));
21309566063dSJacob Faibussowitsch           PetscCall(DMLabelGetValue(blabel, cone[1], &valB));
21319566063dSJacob Faibussowitsch           PetscCall(DMLabelGetValue(blabel, support[s], &valE));
21329566063dSJacob Faibussowitsch           if ((valE < 0) && (valA >= 0) && (valB >= 0) && (cone[0] != cone[1])) PetscCall(DMLabelSetValue(blabel, support[s], 2));
213386200784SMatthew G. Knepley         }
2134a0541d8aSMatthew G. Knepley       }
2135a0541d8aSMatthew G. Knepley     }
2136accc9626SMatthew G. Knepley     PetscCall(ISRestoreIndices(bdIS, &points));
2137accc9626SMatthew G. Knepley     PetscCall(ISDestroy(&bdIS));
2138a0541d8aSMatthew G. Knepley   }
2139b6dfa339SMatthew G. Knepley   /* Mark ghost fault cells */
2140b6dfa339SMatthew G. Knepley   {
2141b6dfa339SMatthew G. Knepley     PetscSF         sf;
2142b6dfa339SMatthew G. Knepley     const PetscInt *leaves;
2143b6dfa339SMatthew G. Knepley     PetscInt         Nl, l;
2144b6dfa339SMatthew G. Knepley 
2145b6dfa339SMatthew G. Knepley     PetscCall(DMGetPointSF(dm, &sf));
2146b6dfa339SMatthew G. Knepley     PetscCall(PetscSFGetGraph(sf, NULL, &Nl, &leaves, NULL));
2147accc9626SMatthew G. Knepley     PetscCall(DMLabelGetStratumIS(label, dim-1, &dimIS));
2148accc9626SMatthew G. Knepley     if (!dimIS) goto divide;
2149accc9626SMatthew G. Knepley     PetscCall(ISGetLocalSize(dimIS, &numPoints));
2150accc9626SMatthew G. Knepley     PetscCall(ISGetIndices(dimIS, &points));
2151b6dfa339SMatthew G. Knepley     if (Nl > 0) {
2152b6dfa339SMatthew G. Knepley       for (p = 0; p < numPoints; ++p) {
2153b6dfa339SMatthew G. Knepley         const PetscInt point = points[p];
2154b6dfa339SMatthew G. Knepley         PetscInt       val;
2155b6dfa339SMatthew G. Knepley 
2156b6dfa339SMatthew G. Knepley         PetscCall(PetscFindInt(point, Nl, leaves, &l));
2157b6dfa339SMatthew G. Knepley         if (l >= 0) {
2158b6dfa339SMatthew G. Knepley           PetscInt *closure = NULL;
2159b6dfa339SMatthew G. Knepley           PetscInt  closureSize, cl;
2160b6dfa339SMatthew G. Knepley 
2161b6dfa339SMatthew G. Knepley           PetscCall(DMLabelGetValue(label, point, &val));
2162b6dfa339SMatthew G. Knepley           PetscCheck((val == dim-1) || (val == shift2+dim-1), PETSC_COMM_SELF, PETSC_ERR_PLIB, "Point %" PetscInt_FMT " has label value %" PetscInt_FMT ", should be a fault face", point, val);
2163b6dfa339SMatthew G. Knepley           PetscCall(DMLabelClearValue(label, point, val));
2164b6dfa339SMatthew G. Knepley           PetscCall(DMLabelSetValue(label, point, shift3+val));
2165b6dfa339SMatthew G. Knepley           PetscCall(DMPlexGetTransitiveClosure(dm, point, PETSC_TRUE, &closureSize, &closure));
2166accc9626SMatthew G. Knepley           for (cl = 2; cl < closureSize*2; cl += 2) {
2167b6dfa339SMatthew G. Knepley             const PetscInt clp  = closure[cl];
2168b6dfa339SMatthew G. Knepley 
2169b6dfa339SMatthew G. Knepley             PetscCall(DMLabelGetValue(label, clp, &val));
2170b6dfa339SMatthew G. Knepley             PetscCheck(val != -1, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Point %" PetscInt_FMT " is missing from label, but is in the closure of a fault face", point);
2171b6dfa339SMatthew G. Knepley             PetscCall(DMLabelClearValue(label, clp, val));
2172b6dfa339SMatthew G. Knepley             PetscCall(DMLabelSetValue(label, clp, shift3+val));
2173b6dfa339SMatthew G. Knepley           }
2174b6dfa339SMatthew G. Knepley           PetscCall(DMPlexRestoreTransitiveClosure(dm, point, PETSC_TRUE, &closureSize, &closure));
2175b6dfa339SMatthew G. Knepley         }
2176b6dfa339SMatthew G. Knepley       }
2177b6dfa339SMatthew G. Knepley     }
2178b6dfa339SMatthew G. Knepley     PetscCall(ISRestoreIndices(dimIS, &points));
2179b6dfa339SMatthew G. Knepley     PetscCall(ISDestroy(&dimIS));
2180accc9626SMatthew G. Knepley   }
2181accc9626SMatthew G. Knepley   divide:
2182b6dfa339SMatthew G. Knepley   if (subpointIS) PetscCall(ISRestoreIndices(subpointIS, &subpoints));
2183accc9626SMatthew G. Knepley   PetscCall(DMPlexLabelFaultHalo(dm, label));
2184accc9626SMatthew G. Knepley   PetscCall(CheckFaultEdge_Private(dm, label));
2185cd0c2139SMatthew G Knepley   PetscFunctionReturn(0);
2186cd0c2139SMatthew G Knepley }
2187cd0c2139SMatthew G Knepley 
2188720e594eSMatthew G. Knepley /* Check that no cell have all vertices on the fault */
2189720e594eSMatthew G. Knepley PetscErrorCode DMPlexCheckValidSubmesh_Private(DM dm, DMLabel label, DM subdm)
2190720e594eSMatthew G. Knepley {
2191720e594eSMatthew G. Knepley   IS              subpointIS;
2192720e594eSMatthew G. Knepley   const PetscInt *dmpoints;
2193720e594eSMatthew G. Knepley   PetscInt        defaultValue, cStart, cEnd, c, vStart, vEnd;
2194720e594eSMatthew G. Knepley 
2195720e594eSMatthew G. Knepley   PetscFunctionBegin;
2196720e594eSMatthew G. Knepley   if (!label) PetscFunctionReturn(0);
21979566063dSJacob Faibussowitsch   PetscCall(DMLabelGetDefaultValue(label, &defaultValue));
21989566063dSJacob Faibussowitsch   PetscCall(DMPlexGetSubpointIS(subdm, &subpointIS));
2199720e594eSMatthew G. Knepley   if (!subpointIS) PetscFunctionReturn(0);
22009566063dSJacob Faibussowitsch   PetscCall(DMPlexGetHeightStratum(subdm, 0, &cStart, &cEnd));
22019566063dSJacob Faibussowitsch   PetscCall(DMPlexGetDepthStratum(dm, 0, &vStart, &vEnd));
22029566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(subpointIS, &dmpoints));
2203720e594eSMatthew G. Knepley   for (c = cStart; c < cEnd; ++c) {
2204720e594eSMatthew G. Knepley     PetscBool invalidCell = PETSC_TRUE;
2205720e594eSMatthew G. Knepley     PetscInt *closure     = NULL;
2206720e594eSMatthew G. Knepley     PetscInt  closureSize, cl;
2207720e594eSMatthew G. Knepley 
22089566063dSJacob Faibussowitsch     PetscCall(DMPlexGetTransitiveClosure(dm, dmpoints[c], PETSC_TRUE, &closureSize, &closure));
2209720e594eSMatthew G. Knepley     for (cl = 0; cl < closureSize*2; cl += 2) {
2210720e594eSMatthew G. Knepley       PetscInt value = 0;
2211720e594eSMatthew G. Knepley 
2212720e594eSMatthew G. Knepley       if ((closure[cl] < vStart) || (closure[cl] >= vEnd)) continue;
22139566063dSJacob Faibussowitsch       PetscCall(DMLabelGetValue(label, closure[cl], &value));
2214720e594eSMatthew G. Knepley       if (value == defaultValue) {invalidCell = PETSC_FALSE; break;}
2215720e594eSMatthew G. Knepley     }
22169566063dSJacob Faibussowitsch     PetscCall(DMPlexRestoreTransitiveClosure(dm, dmpoints[c], PETSC_TRUE, &closureSize, &closure));
2217720e594eSMatthew G. Knepley     if (invalidCell) {
22189566063dSJacob Faibussowitsch       PetscCall(ISRestoreIndices(subpointIS, &dmpoints));
22199566063dSJacob Faibussowitsch       PetscCall(ISDestroy(&subpointIS));
22209566063dSJacob Faibussowitsch       PetscCall(DMDestroy(&subdm));
222163a3b9bcSJacob Faibussowitsch       SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Ambiguous submesh. Cell %" PetscInt_FMT " has all of its vertices on the submesh.", dmpoints[c]);
2222720e594eSMatthew G. Knepley     }
2223720e594eSMatthew G. Knepley   }
22249566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(subpointIS, &dmpoints));
2225720e594eSMatthew G. Knepley   PetscFunctionReturn(0);
2226720e594eSMatthew G. Knepley }
2227720e594eSMatthew G. Knepley 
2228c08575a3SMatthew G. Knepley /*@
22293cf72582SMatthew G. Knepley   DMPlexCreateHybridMesh - Create a mesh with hybrid cells along an internal interface
22303cf72582SMatthew G. Knepley 
22313cf72582SMatthew G. Knepley   Collective on dm
22323cf72582SMatthew G. Knepley 
22333cf72582SMatthew G. Knepley   Input Parameters:
22343cf72582SMatthew G. Knepley + dm - The original DM
2235720e594eSMatthew G. Knepley . label - The label specifying the interface vertices
2236caf9e14dSMatthew G. Knepley . bdlabel - The optional label specifying the interface boundary vertices
2237caf9e14dSMatthew G. Knepley - bdvalue - Value of optional label specifying the interface boundary vertices
22383cf72582SMatthew G. Knepley 
22393cf72582SMatthew G. Knepley   Output Parameters:
22407db7e0a7SMatthew G. Knepley + hybridLabel - The label fully marking the interface, or NULL if no output is desired
22417db7e0a7SMatthew G. Knepley . splitLabel - The label containing the split points, or NULL if no output is desired
2242720e594eSMatthew G. Knepley . dmInterface - The new interface DM, or NULL
2243720e594eSMatthew G. Knepley - dmHybrid - The new DM with cohesive cells
22443cf72582SMatthew G. Knepley 
22456eccb800SMatthew Knepley   Note: The hybridLabel indicates what parts of the original mesh impinged on the on division surface. For points
22466eccb800SMatthew Knepley   directly on the division surface, they are labeled with their dimension, so an edge 7 on the division surface would be
22476eccb800SMatthew Knepley   7 (1) in hybridLabel. For points that impinge from the positive side, they are labeled with 100+dim, so an edge 6 with
22486eccb800SMatthew Knepley   one vertex 3 on the surface would be 6 (101) and 3 (0) in hybridLabel. If an edge 9 from the negative side of the
22496eccb800SMatthew Knepley   surface also hits vertex 3, it would be 9 (-101) in hybridLabel.
22506eccb800SMatthew Knepley 
22516eccb800SMatthew Knepley   The splitLabel indicates what points in the new hybrid mesh were the result of splitting points in the original
22526eccb800SMatthew Knepley   mesh. The label value is +=100+dim for each point. For example, if two edges 10 and 14 in the hybrid resulting from
22536eccb800SMatthew Knepley   splitting an edge in the original mesh, you would have 10 (101) and 14 (-101) in the splitLabel.
22546eccb800SMatthew Knepley 
22556eccb800SMatthew Knepley   The dmInterface is a DM built from the original division surface. It has a label which can be retrieved using
22566eccb800SMatthew Knepley   DMPlexGetSubpointMap() which maps each point back to the point in the surface of the original mesh.
22576eccb800SMatthew Knepley 
22583cf72582SMatthew G. Knepley   Level: developer
22593cf72582SMatthew G. Knepley 
2260db781477SPatrick Sanan .seealso: `DMPlexConstructCohesiveCells()`, `DMPlexLabelCohesiveComplete()`, `DMPlexGetSubpointMap()`, `DMCreate()`
22613cf72582SMatthew G. Knepley @*/
2262caf9e14dSMatthew G. Knepley PetscErrorCode DMPlexCreateHybridMesh(DM dm, DMLabel label, DMLabel bdlabel, PetscInt bdvalue, DMLabel *hybridLabel, DMLabel *splitLabel, DM *dmInterface, DM *dmHybrid)
22633cf72582SMatthew G. Knepley {
22643cf72582SMatthew G. Knepley   DM             idm;
22657db7e0a7SMatthew G. Knepley   DMLabel        subpointMap, hlabel, slabel = NULL;
22663cf72582SMatthew G. Knepley   PetscInt       dim;
22673cf72582SMatthew G. Knepley 
22683cf72582SMatthew G. Knepley   PetscFunctionBegin;
22693cf72582SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
2270*92ef8ba2SVaclav Hapla   if (label) PetscValidPointer(label, 2);
2271720e594eSMatthew G. Knepley   if (bdlabel) PetscValidPointer(bdlabel, 3);
2272*92ef8ba2SVaclav Hapla   if (hybridLabel) PetscValidPointer(hybridLabel, 5);
2273*92ef8ba2SVaclav Hapla   if (splitLabel)  PetscValidPointer(splitLabel, 6);
2274*92ef8ba2SVaclav Hapla   if (dmInterface) PetscValidPointer(dmInterface, 7);
2275*92ef8ba2SVaclav Hapla   PetscValidPointer(dmHybrid, 8);
22769566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dm, &dim));
22779566063dSJacob Faibussowitsch   PetscCall(DMPlexCreateSubmesh(dm, label, 1, PETSC_FALSE, &idm));
22789566063dSJacob Faibussowitsch   PetscCall(DMPlexCheckValidSubmesh_Private(dm, label, idm));
22799566063dSJacob Faibussowitsch   PetscCall(DMPlexOrient(idm));
22809566063dSJacob Faibussowitsch   PetscCall(DMPlexGetSubpointMap(idm, &subpointMap));
22819566063dSJacob Faibussowitsch   PetscCall(DMLabelDuplicate(subpointMap, &hlabel));
22829566063dSJacob Faibussowitsch   PetscCall(DMLabelClearStratum(hlabel, dim));
22837db7e0a7SMatthew G. Knepley   if (splitLabel) {
22847db7e0a7SMatthew G. Knepley     const char *name;
22857db7e0a7SMatthew G. Knepley     char        sname[PETSC_MAX_PATH_LEN];
22867db7e0a7SMatthew G. Knepley 
22879566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetName((PetscObject) hlabel, &name));
22889566063dSJacob Faibussowitsch     PetscCall(PetscStrncpy(sname, name, PETSC_MAX_PATH_LEN));
22899566063dSJacob Faibussowitsch     PetscCall(PetscStrcat(sname, " split"));
22909566063dSJacob Faibussowitsch     PetscCall(DMLabelCreate(PETSC_COMM_SELF, sname, &slabel));
22917db7e0a7SMatthew G. Knepley   }
2292caf9e14dSMatthew G. Knepley   PetscCall(DMPlexLabelCohesiveComplete(dm, hlabel, bdlabel, bdvalue, PETSC_FALSE, idm));
2293720e594eSMatthew G. Knepley   if (dmInterface) {*dmInterface = idm;}
22949566063dSJacob Faibussowitsch   else             PetscCall(DMDestroy(&idm));
22959566063dSJacob Faibussowitsch   PetscCall(DMPlexConstructCohesiveCells(dm, hlabel, slabel, dmHybrid));
22965de52c6dSVaclav Hapla   PetscCall(DMPlexCopy_Internal(dm, PETSC_TRUE, PETSC_TRUE, *dmHybrid));
22973cf72582SMatthew G. Knepley   if (hybridLabel) *hybridLabel = hlabel;
22989566063dSJacob Faibussowitsch   else             PetscCall(DMLabelDestroy(&hlabel));
22997db7e0a7SMatthew G. Knepley   if (splitLabel)  *splitLabel  = slabel;
23004a7ee7d0SMatthew G. Knepley   {
23014a7ee7d0SMatthew G. Knepley     DM      cdm;
23024a7ee7d0SMatthew G. Knepley     DMLabel ctLabel;
23034a7ee7d0SMatthew G. Knepley 
23044a7ee7d0SMatthew G. Knepley     /* We need to somehow share the celltype label with the coordinate dm */
23059566063dSJacob Faibussowitsch     PetscCall(DMGetCoordinateDM(*dmHybrid, &cdm));
23069566063dSJacob Faibussowitsch     PetscCall(DMPlexGetCellTypeLabel(*dmHybrid, &ctLabel));
23079566063dSJacob Faibussowitsch     PetscCall(DMSetLabel(cdm, ctLabel));
23084a7ee7d0SMatthew G. Knepley   }
2309cd0c2139SMatthew G Knepley   PetscFunctionReturn(0);
2310cd0c2139SMatthew G Knepley }
2311cd0c2139SMatthew G Knepley 
2312efa14ee0SMatthew G Knepley /* Here we need the explicit assumption that:
2313efa14ee0SMatthew G Knepley 
2314efa14ee0SMatthew G Knepley      For any marked cell, the marked vertices constitute a single face
2315efa14ee0SMatthew G Knepley */
2316830e53efSMatthew G. Knepley static PetscErrorCode DMPlexMarkSubmesh_Uninterpolated(DM dm, DMLabel vertexLabel, PetscInt value, DMLabel subpointMap, PetscInt *numFaces, PetscInt *nFV, DM subdm)
2317efa14ee0SMatthew G Knepley {
2318fed694aaSMatthew G. Knepley   IS               subvertexIS = NULL;
2319efa14ee0SMatthew G Knepley   const PetscInt  *subvertices;
2320412e9a14SMatthew G. Knepley   PetscInt        *pStart, *pEnd, pSize;
2321efa14ee0SMatthew G Knepley   PetscInt         depth, dim, d, numSubVerticesInitial = 0, v;
2322efa14ee0SMatthew G Knepley 
2323efa14ee0SMatthew G Knepley   PetscFunctionBegin;
2324efa14ee0SMatthew G Knepley   *numFaces = 0;
2325efa14ee0SMatthew G Knepley   *nFV      = 0;
23269566063dSJacob Faibussowitsch   PetscCall(DMPlexGetDepth(dm, &depth));
23279566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dm, &dim));
232877d178adSMatthew G. Knepley   pSize = PetscMax(depth, dim) + 1;
23299566063dSJacob Faibussowitsch   PetscCall(PetscMalloc2(pSize, &pStart, pSize, &pEnd));
2330efa14ee0SMatthew G Knepley   for (d = 0; d <= depth; ++d) {
23319566063dSJacob Faibussowitsch     PetscCall(DMPlexGetSimplexOrBoxCells(dm, depth-d, &pStart[d], &pEnd[d]));
2332efa14ee0SMatthew G Knepley   }
2333efa14ee0SMatthew G Knepley   /* Loop over initial vertices and mark all faces in the collective star() */
23349566063dSJacob Faibussowitsch   if (vertexLabel) PetscCall(DMLabelGetStratumIS(vertexLabel, value, &subvertexIS));
2335efa14ee0SMatthew G Knepley   if (subvertexIS) {
23369566063dSJacob Faibussowitsch     PetscCall(ISGetSize(subvertexIS, &numSubVerticesInitial));
23379566063dSJacob Faibussowitsch     PetscCall(ISGetIndices(subvertexIS, &subvertices));
2338efa14ee0SMatthew G Knepley   }
2339efa14ee0SMatthew G Knepley   for (v = 0; v < numSubVerticesInitial; ++v) {
2340efa14ee0SMatthew G Knepley     const PetscInt vertex = subvertices[v];
23410298fd71SBarry Smith     PetscInt      *star   = NULL;
2342efa14ee0SMatthew G Knepley     PetscInt       starSize, s, numCells = 0, c;
2343efa14ee0SMatthew G Knepley 
23449566063dSJacob Faibussowitsch     PetscCall(DMPlexGetTransitiveClosure(dm, vertex, PETSC_FALSE, &starSize, &star));
2345efa14ee0SMatthew G Knepley     for (s = 0; s < starSize*2; s += 2) {
2346efa14ee0SMatthew G Knepley       const PetscInt point = star[s];
2347efa14ee0SMatthew G Knepley       if ((point >= pStart[depth]) && (point < pEnd[depth])) star[numCells++] = point;
2348efa14ee0SMatthew G Knepley     }
2349efa14ee0SMatthew G Knepley     for (c = 0; c < numCells; ++c) {
2350efa14ee0SMatthew G Knepley       const PetscInt cell    = star[c];
23510298fd71SBarry Smith       PetscInt      *closure = NULL;
2352efa14ee0SMatthew G Knepley       PetscInt       closureSize, cl;
2353efa14ee0SMatthew G Knepley       PetscInt       cellLoc, numCorners = 0, faceSize = 0;
2354efa14ee0SMatthew G Knepley 
23559566063dSJacob Faibussowitsch       PetscCall(DMLabelGetValue(subpointMap, cell, &cellLoc));
235665560c7fSMatthew G Knepley       if (cellLoc == 2) continue;
235763a3b9bcSJacob Faibussowitsch       PetscCheck(cellLoc < 0,PetscObjectComm((PetscObject)dm), PETSC_ERR_PLIB, "Cell %" PetscInt_FMT " has dimension %" PetscInt_FMT " in the surface label", cell, cellLoc);
23589566063dSJacob Faibussowitsch       PetscCall(DMPlexGetTransitiveClosure(dm, cell, PETSC_TRUE, &closureSize, &closure));
2359efa14ee0SMatthew G Knepley       for (cl = 0; cl < closureSize*2; cl += 2) {
2360efa14ee0SMatthew G Knepley         const PetscInt point = closure[cl];
2361efa14ee0SMatthew G Knepley         PetscInt       vertexLoc;
2362efa14ee0SMatthew G Knepley 
2363efa14ee0SMatthew G Knepley         if ((point >= pStart[0]) && (point < pEnd[0])) {
2364efa14ee0SMatthew G Knepley           ++numCorners;
23659566063dSJacob Faibussowitsch           PetscCall(DMLabelGetValue(vertexLabel, point, &vertexLoc));
2366830e53efSMatthew G. Knepley           if (vertexLoc == value) closure[faceSize++] = point;
2367efa14ee0SMatthew G Knepley         }
2368efa14ee0SMatthew G Knepley       }
23699566063dSJacob Faibussowitsch       if (!(*nFV)) PetscCall(DMPlexGetNumFaceVertices(dm, dim, numCorners, nFV));
237063a3b9bcSJacob Faibussowitsch       PetscCheck(faceSize <= *nFV,PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Invalid submesh: Too many vertices %" PetscInt_FMT " of an element on the surface", faceSize);
2371efa14ee0SMatthew G Knepley       if (faceSize == *nFV) {
2372007baee2SMatthew G. Knepley         const PetscInt *cells = NULL;
2373007baee2SMatthew G. Knepley         PetscInt        numCells, nc;
2374007baee2SMatthew G. Knepley 
2375efa14ee0SMatthew G Knepley         ++(*numFaces);
2376efa14ee0SMatthew G Knepley         for (cl = 0; cl < faceSize; ++cl) {
23779566063dSJacob Faibussowitsch           PetscCall(DMLabelSetValue(subpointMap, closure[cl], 0));
2378efa14ee0SMatthew G Knepley         }
23799566063dSJacob Faibussowitsch         PetscCall(DMPlexGetJoin(dm, faceSize, closure, &numCells, &cells));
2380007baee2SMatthew G. Knepley         for (nc = 0; nc < numCells; ++nc) {
23819566063dSJacob Faibussowitsch           PetscCall(DMLabelSetValue(subpointMap, cells[nc], 2));
2382007baee2SMatthew G. Knepley         }
23839566063dSJacob Faibussowitsch         PetscCall(DMPlexRestoreJoin(dm, faceSize, closure, &numCells, &cells));
2384efa14ee0SMatthew G Knepley       }
23859566063dSJacob Faibussowitsch       PetscCall(DMPlexRestoreTransitiveClosure(dm, cell, PETSC_TRUE, &closureSize, &closure));
2386efa14ee0SMatthew G Knepley     }
23879566063dSJacob Faibussowitsch     PetscCall(DMPlexRestoreTransitiveClosure(dm, vertex, PETSC_FALSE, &starSize, &star));
2388efa14ee0SMatthew G Knepley   }
2389efa14ee0SMatthew G Knepley   if (subvertexIS) {
23909566063dSJacob Faibussowitsch     PetscCall(ISRestoreIndices(subvertexIS, &subvertices));
2391efa14ee0SMatthew G Knepley   }
23929566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&subvertexIS));
23939566063dSJacob Faibussowitsch   PetscCall(PetscFree2(pStart, pEnd));
2394efa14ee0SMatthew G Knepley   PetscFunctionReturn(0);
2395efa14ee0SMatthew G Knepley }
2396efa14ee0SMatthew G Knepley 
2397158acfadSMatthew G. Knepley static PetscErrorCode DMPlexMarkSubmesh_Interpolated(DM dm, DMLabel vertexLabel, PetscInt value, PetscBool markedFaces, DMLabel subpointMap, DM subdm)
2398efa14ee0SMatthew G Knepley {
239934b4c39eSMatthew G. Knepley   IS               subvertexIS = NULL;
2400efa14ee0SMatthew G Knepley   const PetscInt  *subvertices;
2401412e9a14SMatthew G. Knepley   PetscInt        *pStart, *pEnd;
2402efa14ee0SMatthew G Knepley   PetscInt         dim, d, numSubVerticesInitial = 0, v;
2403efa14ee0SMatthew G Knepley 
2404efa14ee0SMatthew G Knepley   PetscFunctionBegin;
24059566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dm, &dim));
24069566063dSJacob Faibussowitsch   PetscCall(PetscMalloc2(dim+1, &pStart, dim+1, &pEnd));
2407efa14ee0SMatthew G Knepley   for (d = 0; d <= dim; ++d) {
24089566063dSJacob Faibussowitsch     PetscCall(DMPlexGetSimplexOrBoxCells(dm, dim-d, &pStart[d], &pEnd[d]));
2409efa14ee0SMatthew G Knepley   }
2410efa14ee0SMatthew G Knepley   /* Loop over initial vertices and mark all faces in the collective star() */
241134b4c39eSMatthew G. Knepley   if (vertexLabel) {
24129566063dSJacob Faibussowitsch     PetscCall(DMLabelGetStratumIS(vertexLabel, value, &subvertexIS));
2413efa14ee0SMatthew G Knepley     if (subvertexIS) {
24149566063dSJacob Faibussowitsch       PetscCall(ISGetSize(subvertexIS, &numSubVerticesInitial));
24159566063dSJacob Faibussowitsch       PetscCall(ISGetIndices(subvertexIS, &subvertices));
2416efa14ee0SMatthew G Knepley     }
241734b4c39eSMatthew G. Knepley   }
2418efa14ee0SMatthew G Knepley   for (v = 0; v < numSubVerticesInitial; ++v) {
2419efa14ee0SMatthew G Knepley     const PetscInt vertex = subvertices[v];
24200298fd71SBarry Smith     PetscInt      *star   = NULL;
2421efa14ee0SMatthew G Knepley     PetscInt       starSize, s, numFaces = 0, f;
2422efa14ee0SMatthew G Knepley 
24239566063dSJacob Faibussowitsch     PetscCall(DMPlexGetTransitiveClosure(dm, vertex, PETSC_FALSE, &starSize, &star));
2424efa14ee0SMatthew G Knepley     for (s = 0; s < starSize*2; s += 2) {
2425efa14ee0SMatthew G Knepley       const PetscInt point = star[s];
2426158acfadSMatthew G. Knepley       PetscInt       faceLoc;
2427158acfadSMatthew G. Knepley 
2428158acfadSMatthew G. Knepley       if ((point >= pStart[dim-1]) && (point < pEnd[dim-1])) {
2429158acfadSMatthew G. Knepley         if (markedFaces) {
24309566063dSJacob Faibussowitsch           PetscCall(DMLabelGetValue(vertexLabel, point, &faceLoc));
2431158acfadSMatthew G. Knepley           if (faceLoc < 0) continue;
2432158acfadSMatthew G. Knepley         }
2433158acfadSMatthew G. Knepley         star[numFaces++] = point;
2434158acfadSMatthew G. Knepley       }
2435efa14ee0SMatthew G Knepley     }
2436efa14ee0SMatthew G Knepley     for (f = 0; f < numFaces; ++f) {
2437efa14ee0SMatthew G Knepley       const PetscInt face    = star[f];
24380298fd71SBarry Smith       PetscInt      *closure = NULL;
2439efa14ee0SMatthew G Knepley       PetscInt       closureSize, c;
2440efa14ee0SMatthew G Knepley       PetscInt       faceLoc;
2441efa14ee0SMatthew G Knepley 
24429566063dSJacob Faibussowitsch       PetscCall(DMLabelGetValue(subpointMap, face, &faceLoc));
2443efa14ee0SMatthew G Knepley       if (faceLoc == dim-1) continue;
244463a3b9bcSJacob Faibussowitsch       PetscCheck(faceLoc < 0,PetscObjectComm((PetscObject)dm), PETSC_ERR_PLIB, "Face %" PetscInt_FMT " has dimension %" PetscInt_FMT " in the surface label", face, faceLoc);
24459566063dSJacob Faibussowitsch       PetscCall(DMPlexGetTransitiveClosure(dm, face, PETSC_TRUE, &closureSize, &closure));
2446efa14ee0SMatthew G Knepley       for (c = 0; c < closureSize*2; c += 2) {
2447efa14ee0SMatthew G Knepley         const PetscInt point = closure[c];
2448efa14ee0SMatthew G Knepley         PetscInt       vertexLoc;
2449efa14ee0SMatthew G Knepley 
2450efa14ee0SMatthew G Knepley         if ((point >= pStart[0]) && (point < pEnd[0])) {
24519566063dSJacob Faibussowitsch           PetscCall(DMLabelGetValue(vertexLabel, point, &vertexLoc));
2452830e53efSMatthew G. Knepley           if (vertexLoc != value) break;
2453efa14ee0SMatthew G Knepley         }
2454efa14ee0SMatthew G Knepley       }
2455efa14ee0SMatthew G Knepley       if (c == closureSize*2) {
2456efa14ee0SMatthew G Knepley         const PetscInt *support;
2457efa14ee0SMatthew G Knepley         PetscInt        supportSize, s;
2458efa14ee0SMatthew G Knepley 
2459efa14ee0SMatthew G Knepley         for (c = 0; c < closureSize*2; c += 2) {
2460efa14ee0SMatthew G Knepley           const PetscInt point = closure[c];
2461efa14ee0SMatthew G Knepley 
2462efa14ee0SMatthew G Knepley           for (d = 0; d < dim; ++d) {
2463efa14ee0SMatthew G Knepley             if ((point >= pStart[d]) && (point < pEnd[d])) {
24649566063dSJacob Faibussowitsch               PetscCall(DMLabelSetValue(subpointMap, point, d));
2465efa14ee0SMatthew G Knepley               break;
2466efa14ee0SMatthew G Knepley             }
2467efa14ee0SMatthew G Knepley           }
2468efa14ee0SMatthew G Knepley         }
24699566063dSJacob Faibussowitsch         PetscCall(DMPlexGetSupportSize(dm, face, &supportSize));
24709566063dSJacob Faibussowitsch         PetscCall(DMPlexGetSupport(dm, face, &support));
2471efa14ee0SMatthew G Knepley         for (s = 0; s < supportSize; ++s) {
24729566063dSJacob Faibussowitsch           PetscCall(DMLabelSetValue(subpointMap, support[s], dim));
2473efa14ee0SMatthew G Knepley         }
2474efa14ee0SMatthew G Knepley       }
24759566063dSJacob Faibussowitsch       PetscCall(DMPlexRestoreTransitiveClosure(dm, face, PETSC_TRUE, &closureSize, &closure));
2476efa14ee0SMatthew G Knepley     }
24779566063dSJacob Faibussowitsch     PetscCall(DMPlexRestoreTransitiveClosure(dm, vertex, PETSC_FALSE, &starSize, &star));
2478efa14ee0SMatthew G Knepley   }
24799566063dSJacob Faibussowitsch   if (subvertexIS) PetscCall(ISRestoreIndices(subvertexIS, &subvertices));
24809566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&subvertexIS));
24819566063dSJacob Faibussowitsch   PetscCall(PetscFree2(pStart, pEnd));
2482efa14ee0SMatthew G Knepley   PetscFunctionReturn(0);
2483efa14ee0SMatthew G Knepley }
2484efa14ee0SMatthew G Knepley 
248527c04023SMatthew G. Knepley static PetscErrorCode DMPlexMarkCohesiveSubmesh_Uninterpolated(DM dm, PetscBool hasLagrange, const char labelname[], PetscInt value, DMLabel subpointMap, PetscInt *numFaces, PetscInt *nFV, PetscInt *subCells[], DM subdm)
2486766ab985SMatthew G. Knepley {
248727c04023SMatthew G. Knepley   DMLabel         label = NULL;
2488766ab985SMatthew G. Knepley   const PetscInt *cone;
24899fc93327SToby Isaac   PetscInt        dim, cMax, cEnd, c, subc = 0, p, coneSize = -1;
2490766ab985SMatthew G. Knepley 
2491812bfc34SJed Brown   PetscFunctionBegin;
2492c0ed958bSJed Brown   *numFaces = 0;
2493c0ed958bSJed Brown   *nFV = 0;
24949566063dSJacob Faibussowitsch   if (labelname) PetscCall(DMGetLabel(dm, labelname, &label));
2495fed694aaSMatthew G. Knepley   *subCells = NULL;
24969566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dm, &dim));
24979566063dSJacob Faibussowitsch   PetscCall(DMPlexGetTensorPrismBounds_Internal(dm, dim, &cMax, &cEnd));
2498766ab985SMatthew G. Knepley   if (cMax < 0) PetscFunctionReturn(0);
249927c04023SMatthew G. Knepley   if (label) {
250027c04023SMatthew G. Knepley     for (c = cMax; c < cEnd; ++c) {
250127c04023SMatthew G. Knepley       PetscInt val;
250227c04023SMatthew G. Knepley 
25039566063dSJacob Faibussowitsch       PetscCall(DMLabelGetValue(label, c, &val));
250427c04023SMatthew G. Knepley       if (val == value) {
250527c04023SMatthew G. Knepley         ++(*numFaces);
25069566063dSJacob Faibussowitsch         PetscCall(DMPlexGetConeSize(dm, c, &coneSize));
250727c04023SMatthew G. Knepley       }
250827c04023SMatthew G. Knepley     }
250927c04023SMatthew G. Knepley   } else {
2510766ab985SMatthew G. Knepley     *numFaces = cEnd - cMax;
25119566063dSJacob Faibussowitsch     PetscCall(DMPlexGetConeSize(dm, cMax, &coneSize));
251227c04023SMatthew G. Knepley   }
25139566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(*numFaces *2, subCells));
25149fc93327SToby Isaac   if (!(*numFaces)) PetscFunctionReturn(0);
25159fc93327SToby Isaac   *nFV = hasLagrange ? coneSize/3 : coneSize/2;
2516766ab985SMatthew G. Knepley   for (c = cMax; c < cEnd; ++c) {
2517766ab985SMatthew G. Knepley     const PetscInt *cells;
2518766ab985SMatthew G. Knepley     PetscInt        numCells;
2519766ab985SMatthew G. Knepley 
252027c04023SMatthew G. Knepley     if (label) {
252127c04023SMatthew G. Knepley       PetscInt val;
252227c04023SMatthew G. Knepley 
25239566063dSJacob Faibussowitsch       PetscCall(DMLabelGetValue(label, c, &val));
252427c04023SMatthew G. Knepley       if (val != value) continue;
252527c04023SMatthew G. Knepley     }
25269566063dSJacob Faibussowitsch     PetscCall(DMPlexGetCone(dm, c, &cone));
2527766ab985SMatthew G. Knepley     for (p = 0; p < *nFV; ++p) {
25289566063dSJacob Faibussowitsch       PetscCall(DMLabelSetValue(subpointMap, cone[p], 0));
2529766ab985SMatthew G. Knepley     }
2530766ab985SMatthew G. Knepley     /* Negative face */
25319566063dSJacob Faibussowitsch     PetscCall(DMPlexGetJoin(dm, *nFV, cone, &numCells, &cells));
253227234c99SMatthew G. Knepley     /* Not true in parallel
253308401ef6SPierre Jolivet     PetscCheck(numCells == 2,PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Cohesive cells should separate two cells"); */
2534766ab985SMatthew G. Knepley     for (p = 0; p < numCells; ++p) {
25359566063dSJacob Faibussowitsch       PetscCall(DMLabelSetValue(subpointMap, cells[p], 2));
253627234c99SMatthew G. Knepley       (*subCells)[subc++] = cells[p];
2537766ab985SMatthew G. Knepley     }
25389566063dSJacob Faibussowitsch     PetscCall(DMPlexRestoreJoin(dm, *nFV, cone, &numCells, &cells));
2539766ab985SMatthew G. Knepley     /* Positive face is not included */
2540766ab985SMatthew G. Knepley   }
2541766ab985SMatthew G. Knepley   PetscFunctionReturn(0);
2542766ab985SMatthew G. Knepley }
2543766ab985SMatthew G. Knepley 
25443982b651SMatthew G. Knepley static PetscErrorCode DMPlexMarkCohesiveSubmesh_Interpolated(DM dm, DMLabel label, PetscInt value, DMLabel subpointMap, DM subdm)
2545766ab985SMatthew G. Knepley {
2546766ab985SMatthew G. Knepley   PetscInt      *pStart, *pEnd;
2547766ab985SMatthew G. Knepley   PetscInt       dim, cMax, cEnd, c, d;
2548766ab985SMatthew G. Knepley 
2549812bfc34SJed Brown   PetscFunctionBegin;
25509566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dm, &dim));
25519566063dSJacob Faibussowitsch   PetscCall(DMPlexGetTensorPrismBounds_Internal(dm, dim, &cMax, &cEnd));
2552766ab985SMatthew G. Knepley   if (cMax < 0) PetscFunctionReturn(0);
25539566063dSJacob Faibussowitsch   PetscCall(PetscMalloc2(dim+1,&pStart,dim+1,&pEnd));
25549566063dSJacob Faibussowitsch   for (d = 0; d <= dim; ++d) PetscCall(DMPlexGetDepthStratum(dm, d, &pStart[d], &pEnd[d]));
2555766ab985SMatthew G. Knepley   for (c = cMax; c < cEnd; ++c) {
2556766ab985SMatthew G. Knepley     const PetscInt *cone;
2557766ab985SMatthew G. Knepley     PetscInt       *closure = NULL;
2558b3154360SMatthew G. Knepley     PetscInt        fconeSize, coneSize, closureSize, cl, val;
2559766ab985SMatthew G. Knepley 
256027c04023SMatthew G. Knepley     if (label) {
25619566063dSJacob Faibussowitsch       PetscCall(DMLabelGetValue(label, c, &val));
256227c04023SMatthew G. Knepley       if (val != value) continue;
256327c04023SMatthew G. Knepley     }
25649566063dSJacob Faibussowitsch     PetscCall(DMPlexGetConeSize(dm, c, &coneSize));
25659566063dSJacob Faibussowitsch     PetscCall(DMPlexGetCone(dm, c, &cone));
25669566063dSJacob Faibussowitsch     PetscCall(DMPlexGetConeSize(dm, cone[0], &fconeSize));
25671dca8a05SBarry Smith     PetscCheck(coneSize == (fconeSize ? fconeSize : 1) + 2,PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Cohesive cells should separate two cells");
2568b3154360SMatthew G. Knepley     /* Negative face */
25699566063dSJacob Faibussowitsch     PetscCall(DMPlexGetTransitiveClosure(dm, cone[0], PETSC_TRUE, &closureSize, &closure));
2570766ab985SMatthew G. Knepley     for (cl = 0; cl < closureSize*2; cl += 2) {
2571766ab985SMatthew G. Knepley       const PetscInt point = closure[cl];
2572766ab985SMatthew G. Knepley 
2573766ab985SMatthew G. Knepley       for (d = 0; d <= dim; ++d) {
2574766ab985SMatthew G. Knepley         if ((point >= pStart[d]) && (point < pEnd[d])) {
25759566063dSJacob Faibussowitsch           PetscCall(DMLabelSetValue(subpointMap, point, d));
2576766ab985SMatthew G. Knepley           break;
2577766ab985SMatthew G. Knepley         }
2578766ab985SMatthew G. Knepley       }
2579766ab985SMatthew G. Knepley     }
25809566063dSJacob Faibussowitsch     PetscCall(DMPlexRestoreTransitiveClosure(dm, cone[0], PETSC_TRUE, &closureSize, &closure));
2581766ab985SMatthew G. Knepley     /* Cells -- positive face is not included */
2582766ab985SMatthew G. Knepley     for (cl = 0; cl < 1; ++cl) {
2583766ab985SMatthew G. Knepley       const PetscInt *support;
2584766ab985SMatthew G. Knepley       PetscInt        supportSize, s;
2585766ab985SMatthew G. Knepley 
25869566063dSJacob Faibussowitsch       PetscCall(DMPlexGetSupportSize(dm, cone[cl], &supportSize));
258708401ef6SPierre Jolivet       /* PetscCheck(supportSize == 2,PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Cohesive faces should separate two cells"); */
25889566063dSJacob Faibussowitsch       PetscCall(DMPlexGetSupport(dm, cone[cl], &support));
2589766ab985SMatthew G. Knepley       for (s = 0; s < supportSize; ++s) {
25909566063dSJacob Faibussowitsch         PetscCall(DMLabelSetValue(subpointMap, support[s], dim));
2591766ab985SMatthew G. Knepley       }
2592766ab985SMatthew G. Knepley     }
2593766ab985SMatthew G. Knepley   }
25949566063dSJacob Faibussowitsch   PetscCall(PetscFree2(pStart, pEnd));
2595766ab985SMatthew G. Knepley   PetscFunctionReturn(0);
2596766ab985SMatthew G. Knepley }
2597766ab985SMatthew G. Knepley 
2598c08575a3SMatthew G. Knepley static PetscErrorCode DMPlexGetFaceOrientation(DM dm, PetscInt cell, PetscInt numCorners, PetscInt indices[], PetscInt oppositeVertex, PetscInt origVertices[], PetscInt faceVertices[], PetscBool *posOriented)
2599e6ccafaeSMatthew G Knepley {
260082f516ccSBarry Smith   MPI_Comm       comm;
2601e6ccafaeSMatthew G Knepley   PetscBool      posOrient = PETSC_FALSE;
2602e6ccafaeSMatthew G Knepley   const PetscInt debug     = 0;
2603e6ccafaeSMatthew G Knepley   PetscInt       cellDim, faceSize, f;
2604e6ccafaeSMatthew G Knepley 
260582f516ccSBarry Smith   PetscFunctionBegin;
26069566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)dm,&comm));
26079566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dm, &cellDim));
260863a3b9bcSJacob Faibussowitsch   if (debug) PetscCall(PetscPrintf(comm, "cellDim: %" PetscInt_FMT " numCorners: %" PetscInt_FMT "\n", cellDim, numCorners));
2609e6ccafaeSMatthew G Knepley 
2610ddeab2a6SMatthew G. Knepley   if (cellDim == 1 && numCorners == 2) {
2611ddeab2a6SMatthew G. Knepley     /* Triangle */
2612e6ccafaeSMatthew G Knepley     faceSize  = numCorners-1;
2613e6ccafaeSMatthew G Knepley     posOrient = !(oppositeVertex%2) ? PETSC_TRUE : PETSC_FALSE;
2614ddeab2a6SMatthew G. Knepley   } else if (cellDim == 2 && numCorners == 3) {
2615ddeab2a6SMatthew G. Knepley     /* Triangle */
2616ddeab2a6SMatthew G. Knepley     faceSize  = numCorners-1;
2617ddeab2a6SMatthew G. Knepley     posOrient = !(oppositeVertex%2) ? PETSC_TRUE : PETSC_FALSE;
2618ddeab2a6SMatthew G. Knepley   } else if (cellDim == 3 && numCorners == 4) {
2619ddeab2a6SMatthew G. Knepley     /* Tetrahedron */
2620ddeab2a6SMatthew G. Knepley     faceSize  = numCorners-1;
2621ddeab2a6SMatthew G. Knepley     posOrient = (oppositeVertex%2) ? PETSC_TRUE : PETSC_FALSE;
2622e6ccafaeSMatthew G Knepley   } else if (cellDim == 1 && numCorners == 3) {
2623e6ccafaeSMatthew G Knepley     /* Quadratic line */
2624e6ccafaeSMatthew G Knepley     faceSize  = 1;
2625e6ccafaeSMatthew G Knepley     posOrient = PETSC_TRUE;
2626e6ccafaeSMatthew G Knepley   } else if (cellDim == 2 && numCorners == 4) {
2627e6ccafaeSMatthew G Knepley     /* Quads */
2628e6ccafaeSMatthew G Knepley     faceSize = 2;
2629e6ccafaeSMatthew G Knepley     if ((indices[1] > indices[0]) && (indices[1] - indices[0] == 1)) {
2630e6ccafaeSMatthew G Knepley       posOrient = PETSC_TRUE;
2631e6ccafaeSMatthew G Knepley     } else if ((indices[0] == 3) && (indices[1] == 0)) {
2632e6ccafaeSMatthew G Knepley       posOrient = PETSC_TRUE;
2633e6ccafaeSMatthew G Knepley     } else {
2634e6ccafaeSMatthew G Knepley       if (((indices[0] > indices[1]) && (indices[0] - indices[1] == 1)) || ((indices[0] == 0) && (indices[1] == 3))) {
2635e6ccafaeSMatthew G Knepley         posOrient = PETSC_FALSE;
2636e6ccafaeSMatthew G Knepley       } else SETERRQ(comm, PETSC_ERR_ARG_WRONG, "Invalid quad crossedge");
2637e6ccafaeSMatthew G Knepley     }
2638e6ccafaeSMatthew G Knepley   } else if (cellDim == 2 && numCorners == 6) {
2639e6ccafaeSMatthew G Knepley     /* Quadratic triangle (I hate this) */
2640e6ccafaeSMatthew G Knepley     /* Edges are determined by the first 2 vertices (corners of edges) */
2641e6ccafaeSMatthew G Knepley     const PetscInt faceSizeTri = 3;
2642e6ccafaeSMatthew G Knepley     PetscInt       sortedIndices[3], i, iFace;
2643e6ccafaeSMatthew G Knepley     PetscBool      found                    = PETSC_FALSE;
2644e6ccafaeSMatthew G Knepley     PetscInt       faceVerticesTriSorted[9] = {
2645e6ccafaeSMatthew G Knepley       0, 3,  4, /* bottom */
2646e6ccafaeSMatthew G Knepley       1, 4,  5, /* right */
2647e6ccafaeSMatthew G Knepley       2, 3,  5, /* left */
2648e6ccafaeSMatthew G Knepley     };
2649e6ccafaeSMatthew G Knepley     PetscInt       faceVerticesTri[9] = {
2650e6ccafaeSMatthew G Knepley       0, 3,  4, /* bottom */
2651e6ccafaeSMatthew G Knepley       1, 4,  5, /* right */
2652e6ccafaeSMatthew G Knepley       2, 5,  3, /* left */
2653e6ccafaeSMatthew G Knepley     };
2654e6ccafaeSMatthew G Knepley 
2655e6ccafaeSMatthew G Knepley     for (i = 0; i < faceSizeTri; ++i) sortedIndices[i] = indices[i];
26569566063dSJacob Faibussowitsch     PetscCall(PetscSortInt(faceSizeTri, sortedIndices));
2657e6ccafaeSMatthew G Knepley     for (iFace = 0; iFace < 3; ++iFace) {
2658e6ccafaeSMatthew G Knepley       const PetscInt ii = iFace*faceSizeTri;
2659e6ccafaeSMatthew G Knepley       PetscInt       fVertex, cVertex;
2660e6ccafaeSMatthew G Knepley 
2661e6ccafaeSMatthew G Knepley       if ((sortedIndices[0] == faceVerticesTriSorted[ii+0]) &&
2662e6ccafaeSMatthew G Knepley           (sortedIndices[1] == faceVerticesTriSorted[ii+1])) {
2663e6ccafaeSMatthew G Knepley         for (fVertex = 0; fVertex < faceSizeTri; ++fVertex) {
2664e6ccafaeSMatthew G Knepley           for (cVertex = 0; cVertex < faceSizeTri; ++cVertex) {
2665e6ccafaeSMatthew G Knepley             if (indices[cVertex] == faceVerticesTri[ii+fVertex]) {
2666e6ccafaeSMatthew G Knepley               faceVertices[fVertex] = origVertices[cVertex];
2667e6ccafaeSMatthew G Knepley               break;
2668e6ccafaeSMatthew G Knepley             }
2669e6ccafaeSMatthew G Knepley           }
2670e6ccafaeSMatthew G Knepley         }
2671e6ccafaeSMatthew G Knepley         found = PETSC_TRUE;
2672e6ccafaeSMatthew G Knepley         break;
2673e6ccafaeSMatthew G Knepley       }
2674e6ccafaeSMatthew G Knepley     }
267528b400f6SJacob Faibussowitsch     PetscCheck(found,comm, PETSC_ERR_ARG_WRONG, "Invalid tri crossface");
2676e6ccafaeSMatthew G Knepley     if (posOriented) *posOriented = PETSC_TRUE;
2677e6ccafaeSMatthew G Knepley     PetscFunctionReturn(0);
2678e6ccafaeSMatthew G Knepley   } else if (cellDim == 2 && numCorners == 9) {
2679e6ccafaeSMatthew G Knepley     /* Quadratic quad (I hate this) */
2680e6ccafaeSMatthew G Knepley     /* Edges are determined by the first 2 vertices (corners of edges) */
2681e6ccafaeSMatthew G Knepley     const PetscInt faceSizeQuad = 3;
2682e6ccafaeSMatthew G Knepley     PetscInt       sortedIndices[3], i, iFace;
2683e6ccafaeSMatthew G Knepley     PetscBool      found                      = PETSC_FALSE;
2684e6ccafaeSMatthew G Knepley     PetscInt       faceVerticesQuadSorted[12] = {
2685e6ccafaeSMatthew G Knepley       0, 1,  4, /* bottom */
2686e6ccafaeSMatthew G Knepley       1, 2,  5, /* right */
2687e6ccafaeSMatthew G Knepley       2, 3,  6, /* top */
2688e6ccafaeSMatthew G Knepley       0, 3,  7, /* left */
2689e6ccafaeSMatthew G Knepley     };
2690e6ccafaeSMatthew G Knepley     PetscInt       faceVerticesQuad[12] = {
2691e6ccafaeSMatthew G Knepley       0, 1,  4, /* bottom */
2692e6ccafaeSMatthew G Knepley       1, 2,  5, /* right */
2693e6ccafaeSMatthew G Knepley       2, 3,  6, /* top */
2694e6ccafaeSMatthew G Knepley       3, 0,  7, /* left */
2695e6ccafaeSMatthew G Knepley     };
2696e6ccafaeSMatthew G Knepley 
2697e6ccafaeSMatthew G Knepley     for (i = 0; i < faceSizeQuad; ++i) sortedIndices[i] = indices[i];
26989566063dSJacob Faibussowitsch     PetscCall(PetscSortInt(faceSizeQuad, sortedIndices));
2699e6ccafaeSMatthew G Knepley     for (iFace = 0; iFace < 4; ++iFace) {
2700e6ccafaeSMatthew G Knepley       const PetscInt ii = iFace*faceSizeQuad;
2701e6ccafaeSMatthew G Knepley       PetscInt       fVertex, cVertex;
2702e6ccafaeSMatthew G Knepley 
2703e6ccafaeSMatthew G Knepley       if ((sortedIndices[0] == faceVerticesQuadSorted[ii+0]) &&
2704e6ccafaeSMatthew G Knepley           (sortedIndices[1] == faceVerticesQuadSorted[ii+1])) {
2705e6ccafaeSMatthew G Knepley         for (fVertex = 0; fVertex < faceSizeQuad; ++fVertex) {
2706e6ccafaeSMatthew G Knepley           for (cVertex = 0; cVertex < faceSizeQuad; ++cVertex) {
2707e6ccafaeSMatthew G Knepley             if (indices[cVertex] == faceVerticesQuad[ii+fVertex]) {
2708e6ccafaeSMatthew G Knepley               faceVertices[fVertex] = origVertices[cVertex];
2709e6ccafaeSMatthew G Knepley               break;
2710e6ccafaeSMatthew G Knepley             }
2711e6ccafaeSMatthew G Knepley           }
2712e6ccafaeSMatthew G Knepley         }
2713e6ccafaeSMatthew G Knepley         found = PETSC_TRUE;
2714e6ccafaeSMatthew G Knepley         break;
2715e6ccafaeSMatthew G Knepley       }
2716e6ccafaeSMatthew G Knepley     }
271728b400f6SJacob Faibussowitsch     PetscCheck(found,comm, PETSC_ERR_ARG_WRONG, "Invalid quad crossface");
2718e6ccafaeSMatthew G Knepley     if (posOriented) *posOriented = PETSC_TRUE;
2719e6ccafaeSMatthew G Knepley     PetscFunctionReturn(0);
2720e6ccafaeSMatthew G Knepley   } else if (cellDim == 3 && numCorners == 8) {
2721e6ccafaeSMatthew G Knepley     /* Hexes
2722e6ccafaeSMatthew G Knepley        A hex is two oriented quads with the normal of the first
2723e6ccafaeSMatthew G Knepley        pointing up at the second.
2724e6ccafaeSMatthew G Knepley 
2725e6ccafaeSMatthew G Knepley           7---6
2726e6ccafaeSMatthew G Knepley          /|  /|
2727e6ccafaeSMatthew G Knepley         4---5 |
2728ddeab2a6SMatthew G. Knepley         | 1-|-2
2729e6ccafaeSMatthew G Knepley         |/  |/
2730ddeab2a6SMatthew G. Knepley         0---3
2731e6ccafaeSMatthew G Knepley 
2732e6ccafaeSMatthew G Knepley         Faces are determined by the first 4 vertices (corners of faces) */
2733e6ccafaeSMatthew G Knepley     const PetscInt faceSizeHex = 4;
2734e6ccafaeSMatthew G Knepley     PetscInt       sortedIndices[4], i, iFace;
2735e6ccafaeSMatthew G Knepley     PetscBool      found                     = PETSC_FALSE;
2736e6ccafaeSMatthew G Knepley     PetscInt       faceVerticesHexSorted[24] = {
2737e6ccafaeSMatthew G Knepley       0, 1, 2, 3,  /* bottom */
2738e6ccafaeSMatthew G Knepley       4, 5, 6, 7,  /* top */
2739ddeab2a6SMatthew G. Knepley       0, 3, 4, 5,  /* front */
2740ddeab2a6SMatthew G. Knepley       2, 3, 5, 6,  /* right */
2741ddeab2a6SMatthew G. Knepley       1, 2, 6, 7,  /* back */
2742ddeab2a6SMatthew G. Knepley       0, 1, 4, 7,  /* left */
2743e6ccafaeSMatthew G Knepley     };
2744e6ccafaeSMatthew G Knepley     PetscInt       faceVerticesHex[24] = {
2745ddeab2a6SMatthew G. Knepley       1, 2, 3, 0,  /* bottom */
2746e6ccafaeSMatthew G Knepley       4, 5, 6, 7,  /* top */
2747ddeab2a6SMatthew G. Knepley       0, 3, 5, 4,  /* front */
2748ddeab2a6SMatthew G. Knepley       3, 2, 6, 5,  /* right */
2749ddeab2a6SMatthew G. Knepley       2, 1, 7, 6,  /* back */
2750ddeab2a6SMatthew G. Knepley       1, 0, 4, 7,  /* left */
2751e6ccafaeSMatthew G Knepley     };
2752e6ccafaeSMatthew G Knepley 
2753e6ccafaeSMatthew G Knepley     for (i = 0; i < faceSizeHex; ++i) sortedIndices[i] = indices[i];
27549566063dSJacob Faibussowitsch     PetscCall(PetscSortInt(faceSizeHex, sortedIndices));
2755e6ccafaeSMatthew G Knepley     for (iFace = 0; iFace < 6; ++iFace) {
2756e6ccafaeSMatthew G Knepley       const PetscInt ii = iFace*faceSizeHex;
2757e6ccafaeSMatthew G Knepley       PetscInt       fVertex, cVertex;
2758e6ccafaeSMatthew G Knepley 
2759e6ccafaeSMatthew G Knepley       if ((sortedIndices[0] == faceVerticesHexSorted[ii+0]) &&
2760e6ccafaeSMatthew G Knepley           (sortedIndices[1] == faceVerticesHexSorted[ii+1]) &&
2761e6ccafaeSMatthew G Knepley           (sortedIndices[2] == faceVerticesHexSorted[ii+2]) &&
2762e6ccafaeSMatthew G Knepley           (sortedIndices[3] == faceVerticesHexSorted[ii+3])) {
2763e6ccafaeSMatthew G Knepley         for (fVertex = 0; fVertex < faceSizeHex; ++fVertex) {
2764e6ccafaeSMatthew G Knepley           for (cVertex = 0; cVertex < faceSizeHex; ++cVertex) {
2765e6ccafaeSMatthew G Knepley             if (indices[cVertex] == faceVerticesHex[ii+fVertex]) {
2766e6ccafaeSMatthew G Knepley               faceVertices[fVertex] = origVertices[cVertex];
2767e6ccafaeSMatthew G Knepley               break;
2768e6ccafaeSMatthew G Knepley             }
2769e6ccafaeSMatthew G Knepley           }
2770e6ccafaeSMatthew G Knepley         }
2771e6ccafaeSMatthew G Knepley         found = PETSC_TRUE;
2772e6ccafaeSMatthew G Knepley         break;
2773e6ccafaeSMatthew G Knepley       }
2774e6ccafaeSMatthew G Knepley     }
277528b400f6SJacob Faibussowitsch     PetscCheck(found,comm, PETSC_ERR_ARG_WRONG, "Invalid hex crossface");
2776e6ccafaeSMatthew G Knepley     if (posOriented) *posOriented = PETSC_TRUE;
2777e6ccafaeSMatthew G Knepley     PetscFunctionReturn(0);
2778e6ccafaeSMatthew G Knepley   } else if (cellDim == 3 && numCorners == 10) {
2779e6ccafaeSMatthew G Knepley     /* Quadratic tet */
2780e6ccafaeSMatthew G Knepley     /* Faces are determined by the first 3 vertices (corners of faces) */
2781e6ccafaeSMatthew G Knepley     const PetscInt faceSizeTet = 6;
2782e6ccafaeSMatthew G Knepley     PetscInt       sortedIndices[6], i, iFace;
2783e6ccafaeSMatthew G Knepley     PetscBool      found                     = PETSC_FALSE;
2784e6ccafaeSMatthew G Knepley     PetscInt       faceVerticesTetSorted[24] = {
2785e6ccafaeSMatthew G Knepley       0, 1, 2,  6, 7, 8, /* bottom */
2786e6ccafaeSMatthew G Knepley       0, 3, 4,  6, 7, 9,  /* front */
2787e6ccafaeSMatthew G Knepley       1, 4, 5,  7, 8, 9,  /* right */
2788e6ccafaeSMatthew G Knepley       2, 3, 5,  6, 8, 9,  /* left */
2789e6ccafaeSMatthew G Knepley     };
2790e6ccafaeSMatthew G Knepley     PetscInt       faceVerticesTet[24] = {
2791e6ccafaeSMatthew G Knepley       0, 1, 2,  6, 7, 8, /* bottom */
2792e6ccafaeSMatthew G Knepley       0, 4, 3,  6, 7, 9,  /* front */
2793e6ccafaeSMatthew G Knepley       1, 5, 4,  7, 8, 9,  /* right */
2794e6ccafaeSMatthew G Knepley       2, 3, 5,  8, 6, 9,  /* left */
2795e6ccafaeSMatthew G Knepley     };
2796e6ccafaeSMatthew G Knepley 
2797e6ccafaeSMatthew G Knepley     for (i = 0; i < faceSizeTet; ++i) sortedIndices[i] = indices[i];
27989566063dSJacob Faibussowitsch     PetscCall(PetscSortInt(faceSizeTet, sortedIndices));
2799e6ccafaeSMatthew G Knepley     for (iFace=0; iFace < 4; ++iFace) {
2800e6ccafaeSMatthew G Knepley       const PetscInt ii = iFace*faceSizeTet;
2801e6ccafaeSMatthew G Knepley       PetscInt       fVertex, cVertex;
2802e6ccafaeSMatthew G Knepley 
2803e6ccafaeSMatthew G Knepley       if ((sortedIndices[0] == faceVerticesTetSorted[ii+0]) &&
2804e6ccafaeSMatthew G Knepley           (sortedIndices[1] == faceVerticesTetSorted[ii+1]) &&
2805e6ccafaeSMatthew G Knepley           (sortedIndices[2] == faceVerticesTetSorted[ii+2]) &&
2806e6ccafaeSMatthew G Knepley           (sortedIndices[3] == faceVerticesTetSorted[ii+3])) {
2807e6ccafaeSMatthew G Knepley         for (fVertex = 0; fVertex < faceSizeTet; ++fVertex) {
2808e6ccafaeSMatthew G Knepley           for (cVertex = 0; cVertex < faceSizeTet; ++cVertex) {
2809e6ccafaeSMatthew G Knepley             if (indices[cVertex] == faceVerticesTet[ii+fVertex]) {
2810e6ccafaeSMatthew G Knepley               faceVertices[fVertex] = origVertices[cVertex];
2811e6ccafaeSMatthew G Knepley               break;
2812e6ccafaeSMatthew G Knepley             }
2813e6ccafaeSMatthew G Knepley           }
2814e6ccafaeSMatthew G Knepley         }
2815e6ccafaeSMatthew G Knepley         found = PETSC_TRUE;
2816e6ccafaeSMatthew G Knepley         break;
2817e6ccafaeSMatthew G Knepley       }
2818e6ccafaeSMatthew G Knepley     }
281928b400f6SJacob Faibussowitsch     PetscCheck(found,comm, PETSC_ERR_ARG_WRONG, "Invalid tet crossface");
2820e6ccafaeSMatthew G Knepley     if (posOriented) *posOriented = PETSC_TRUE;
2821e6ccafaeSMatthew G Knepley     PetscFunctionReturn(0);
2822e6ccafaeSMatthew G Knepley   } else if (cellDim == 3 && numCorners == 27) {
2823e6ccafaeSMatthew G Knepley     /* Quadratic hexes (I hate this)
2824e6ccafaeSMatthew G Knepley        A hex is two oriented quads with the normal of the first
2825e6ccafaeSMatthew G Knepley        pointing up at the second.
2826e6ccafaeSMatthew G Knepley 
2827e6ccafaeSMatthew G Knepley          7---6
2828e6ccafaeSMatthew G Knepley         /|  /|
2829e6ccafaeSMatthew G Knepley        4---5 |
2830e6ccafaeSMatthew G Knepley        | 3-|-2
2831e6ccafaeSMatthew G Knepley        |/  |/
2832e6ccafaeSMatthew G Knepley        0---1
2833e6ccafaeSMatthew G Knepley 
2834e6ccafaeSMatthew G Knepley        Faces are determined by the first 4 vertices (corners of faces) */
2835e6ccafaeSMatthew G Knepley     const PetscInt faceSizeQuadHex = 9;
2836e6ccafaeSMatthew G Knepley     PetscInt       sortedIndices[9], i, iFace;
2837e6ccafaeSMatthew G Knepley     PetscBool      found                         = PETSC_FALSE;
2838e6ccafaeSMatthew G Knepley     PetscInt       faceVerticesQuadHexSorted[54] = {
2839e6ccafaeSMatthew G Knepley       0, 1, 2, 3,  8, 9, 10, 11,  24, /* bottom */
2840e6ccafaeSMatthew G Knepley       4, 5, 6, 7,  12, 13, 14, 15,  25, /* top */
2841e6ccafaeSMatthew G Knepley       0, 1, 4, 5,  8, 12, 16, 17,  22, /* front */
2842e6ccafaeSMatthew G Knepley       1, 2, 5, 6,  9, 13, 17, 18,  21, /* right */
2843e6ccafaeSMatthew G Knepley       2, 3, 6, 7,  10, 14, 18, 19,  23, /* back */
2844e6ccafaeSMatthew G Knepley       0, 3, 4, 7,  11, 15, 16, 19,  20, /* left */
2845e6ccafaeSMatthew G Knepley     };
2846e6ccafaeSMatthew G Knepley     PetscInt       faceVerticesQuadHex[54] = {
2847e6ccafaeSMatthew G Knepley       3, 2, 1, 0,  10, 9, 8, 11,  24, /* bottom */
2848e6ccafaeSMatthew G Knepley       4, 5, 6, 7,  12, 13, 14, 15,  25, /* top */
2849e6ccafaeSMatthew G Knepley       0, 1, 5, 4,  8, 17, 12, 16,  22, /* front */
2850e6ccafaeSMatthew G Knepley       1, 2, 6, 5,  9, 18, 13, 17,  21, /* right */
2851e6ccafaeSMatthew G Knepley       2, 3, 7, 6,  10, 19, 14, 18,  23, /* back */
2852e6ccafaeSMatthew G Knepley       3, 0, 4, 7,  11, 16, 15, 19,  20 /* left */
2853e6ccafaeSMatthew G Knepley     };
2854e6ccafaeSMatthew G Knepley 
2855e6ccafaeSMatthew G Knepley     for (i = 0; i < faceSizeQuadHex; ++i) sortedIndices[i] = indices[i];
28569566063dSJacob Faibussowitsch     PetscCall(PetscSortInt(faceSizeQuadHex, sortedIndices));
2857e6ccafaeSMatthew G Knepley     for (iFace = 0; iFace < 6; ++iFace) {
2858e6ccafaeSMatthew G Knepley       const PetscInt ii = iFace*faceSizeQuadHex;
2859e6ccafaeSMatthew G Knepley       PetscInt       fVertex, cVertex;
2860e6ccafaeSMatthew G Knepley 
2861e6ccafaeSMatthew G Knepley       if ((sortedIndices[0] == faceVerticesQuadHexSorted[ii+0]) &&
2862e6ccafaeSMatthew G Knepley           (sortedIndices[1] == faceVerticesQuadHexSorted[ii+1]) &&
2863e6ccafaeSMatthew G Knepley           (sortedIndices[2] == faceVerticesQuadHexSorted[ii+2]) &&
2864e6ccafaeSMatthew G Knepley           (sortedIndices[3] == faceVerticesQuadHexSorted[ii+3])) {
2865e6ccafaeSMatthew G Knepley         for (fVertex = 0; fVertex < faceSizeQuadHex; ++fVertex) {
2866e6ccafaeSMatthew G Knepley           for (cVertex = 0; cVertex < faceSizeQuadHex; ++cVertex) {
2867e6ccafaeSMatthew G Knepley             if (indices[cVertex] == faceVerticesQuadHex[ii+fVertex]) {
2868e6ccafaeSMatthew G Knepley               faceVertices[fVertex] = origVertices[cVertex];
2869e6ccafaeSMatthew G Knepley               break;
2870e6ccafaeSMatthew G Knepley             }
2871e6ccafaeSMatthew G Knepley           }
2872e6ccafaeSMatthew G Knepley         }
2873e6ccafaeSMatthew G Knepley         found = PETSC_TRUE;
2874e6ccafaeSMatthew G Knepley         break;
2875e6ccafaeSMatthew G Knepley       }
2876e6ccafaeSMatthew G Knepley     }
287728b400f6SJacob Faibussowitsch     PetscCheck(found,comm, PETSC_ERR_ARG_WRONG, "Invalid hex crossface");
2878e6ccafaeSMatthew G Knepley     if (posOriented) *posOriented = PETSC_TRUE;
2879e6ccafaeSMatthew G Knepley     PetscFunctionReturn(0);
2880e6ccafaeSMatthew G Knepley   } else SETERRQ(comm, PETSC_ERR_ARG_WRONG, "Unknown cell type for faceOrientation().");
2881e6ccafaeSMatthew G Knepley   if (!posOrient) {
28829566063dSJacob Faibussowitsch     if (debug) PetscCall(PetscPrintf(comm, "  Reversing initial face orientation\n"));
2883e6ccafaeSMatthew G Knepley     for (f = 0; f < faceSize; ++f) faceVertices[f] = origVertices[faceSize-1 - f];
2884e6ccafaeSMatthew G Knepley   } else {
28859566063dSJacob Faibussowitsch     if (debug) PetscCall(PetscPrintf(comm, "  Keeping initial face orientation\n"));
2886e6ccafaeSMatthew G Knepley     for (f = 0; f < faceSize; ++f) faceVertices[f] = origVertices[f];
2887e6ccafaeSMatthew G Knepley   }
2888e6ccafaeSMatthew G Knepley   if (posOriented) *posOriented = posOrient;
2889e6ccafaeSMatthew G Knepley   PetscFunctionReturn(0);
2890e6ccafaeSMatthew G Knepley }
2891e6ccafaeSMatthew G Knepley 
2892c08575a3SMatthew G. Knepley /*@
2893c08575a3SMatthew G. Knepley   DMPlexGetOrientedFace - Given a cell and a face, as a set of vertices, return the oriented face, as a set of vertices,
2894c08575a3SMatthew G. Knepley   in faceVertices. The orientation is such that the face normal points out of the cell
2895c08575a3SMatthew G. Knepley 
2896c08575a3SMatthew G. Knepley   Not collective
2897c08575a3SMatthew G. Knepley 
2898c08575a3SMatthew G. Knepley   Input Parameters:
2899c08575a3SMatthew G. Knepley + dm           - The original mesh
2900c08575a3SMatthew G. Knepley . cell         - The cell mesh point
2901c08575a3SMatthew G. Knepley . faceSize     - The number of vertices on the face
2902c08575a3SMatthew G. Knepley . face         - The face vertices
2903c08575a3SMatthew G. Knepley . numCorners   - The number of vertices on the cell
2904c08575a3SMatthew G. Knepley . indices      - Local numbering of face vertices in cell cone
2905c08575a3SMatthew G. Knepley - origVertices - Original face vertices
2906c08575a3SMatthew G. Knepley 
2907d8d19677SJose E. Roman   Output Parameters:
2908c08575a3SMatthew G. Knepley + faceVertices - The face vertices properly oriented
2909c08575a3SMatthew G. Knepley - posOriented  - PETSC_TRUE if the face was oriented with outward normal
2910c08575a3SMatthew G. Knepley 
2911c08575a3SMatthew G. Knepley   Level: developer
2912c08575a3SMatthew G. Knepley 
2913db781477SPatrick Sanan .seealso: `DMPlexGetCone()`
2914c08575a3SMatthew G. Knepley @*/
2915e6ccafaeSMatthew G Knepley PetscErrorCode DMPlexGetOrientedFace(DM dm, PetscInt cell, PetscInt faceSize, const PetscInt face[], PetscInt numCorners, PetscInt indices[], PetscInt origVertices[], PetscInt faceVertices[], PetscBool *posOriented)
2916e6ccafaeSMatthew G Knepley {
29170298fd71SBarry Smith   const PetscInt *cone = NULL;
2918e6ccafaeSMatthew G Knepley   PetscInt        coneSize, v, f, v2;
2919e6ccafaeSMatthew G Knepley   PetscInt        oppositeVertex = -1;
2920e6ccafaeSMatthew G Knepley 
2921e6ccafaeSMatthew G Knepley   PetscFunctionBegin;
29229566063dSJacob Faibussowitsch   PetscCall(DMPlexGetConeSize(dm, cell, &coneSize));
29239566063dSJacob Faibussowitsch   PetscCall(DMPlexGetCone(dm, cell, &cone));
2924e6ccafaeSMatthew G Knepley   for (v = 0, v2 = 0; v < coneSize; ++v) {
2925e6ccafaeSMatthew G Knepley     PetscBool found = PETSC_FALSE;
2926e6ccafaeSMatthew G Knepley 
2927e6ccafaeSMatthew G Knepley     for (f = 0; f < faceSize; ++f) {
2928e6ccafaeSMatthew G Knepley       if (face[f] == cone[v]) {
2929e6ccafaeSMatthew G Knepley         found = PETSC_TRUE; break;
2930e6ccafaeSMatthew G Knepley       }
2931e6ccafaeSMatthew G Knepley     }
2932e6ccafaeSMatthew G Knepley     if (found) {
2933e6ccafaeSMatthew G Knepley       indices[v2]      = v;
2934e6ccafaeSMatthew G Knepley       origVertices[v2] = cone[v];
2935e6ccafaeSMatthew G Knepley       ++v2;
2936e6ccafaeSMatthew G Knepley     } else {
2937e6ccafaeSMatthew G Knepley       oppositeVertex = v;
2938e6ccafaeSMatthew G Knepley     }
2939e6ccafaeSMatthew G Knepley   }
29409566063dSJacob Faibussowitsch   PetscCall(DMPlexGetFaceOrientation(dm, cell, numCorners, indices, oppositeVertex, origVertices, faceVertices, posOriented));
2941e6ccafaeSMatthew G Knepley   PetscFunctionReturn(0);
2942e6ccafaeSMatthew G Knepley }
2943e6ccafaeSMatthew G Knepley 
2944e6ccafaeSMatthew G Knepley /*
2945cd0c2139SMatthew G Knepley   DMPlexInsertFace_Internal - Puts a face into the mesh
2946e6ccafaeSMatthew G Knepley 
2947e6ccafaeSMatthew G Knepley   Not collective
2948e6ccafaeSMatthew G Knepley 
2949e6ccafaeSMatthew G Knepley   Input Parameters:
2950e6ccafaeSMatthew G Knepley   + dm              - The DMPlex
2951e6ccafaeSMatthew G Knepley   . numFaceVertex   - The number of vertices in the face
2952e6ccafaeSMatthew G Knepley   . faceVertices    - The vertices in the face for dm
2953e6ccafaeSMatthew G Knepley   . subfaceVertices - The vertices in the face for subdm
2954e6ccafaeSMatthew G Knepley   . numCorners      - The number of vertices in the cell
2955e6ccafaeSMatthew G Knepley   . cell            - A cell in dm containing the face
2956e6ccafaeSMatthew G Knepley   . subcell         - A cell in subdm containing the face
2957e6ccafaeSMatthew G Knepley   . firstFace       - First face in the mesh
2958e6ccafaeSMatthew G Knepley   - newFacePoint    - Next face in the mesh
2959e6ccafaeSMatthew G Knepley 
2960e6ccafaeSMatthew G Knepley   Output Parameters:
2961e6ccafaeSMatthew G Knepley   . newFacePoint - Contains next face point number on input, updated on output
2962e6ccafaeSMatthew G Knepley 
2963e6ccafaeSMatthew G Knepley   Level: developer
2964e6ccafaeSMatthew G Knepley */
2965cd0c2139SMatthew G Knepley static PetscErrorCode DMPlexInsertFace_Internal(DM dm, DM subdm, PetscInt numFaceVertices, const PetscInt faceVertices[], const PetscInt subfaceVertices[], PetscInt numCorners, PetscInt cell, PetscInt subcell, PetscInt firstFace, PetscInt *newFacePoint)
2966e6ccafaeSMatthew G Knepley {
296782f516ccSBarry Smith   MPI_Comm        comm;
2968e6ccafaeSMatthew G Knepley   DM_Plex        *submesh = (DM_Plex*) subdm->data;
2969e6ccafaeSMatthew G Knepley   const PetscInt *faces;
2970e6ccafaeSMatthew G Knepley   PetscInt        numFaces, coneSize;
2971e6ccafaeSMatthew G Knepley 
2972e6ccafaeSMatthew G Knepley   PetscFunctionBegin;
29739566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)dm,&comm));
29749566063dSJacob Faibussowitsch   PetscCall(DMPlexGetConeSize(subdm, subcell, &coneSize));
297563a3b9bcSJacob Faibussowitsch   PetscCheck(coneSize == 1,comm, PETSC_ERR_ARG_OUTOFRANGE, "Cone size of cell %" PetscInt_FMT " is %" PetscInt_FMT " != 1", cell, coneSize);
2976e6ccafaeSMatthew G Knepley #if 0
2977e6ccafaeSMatthew G Knepley   /* Cannot use this because support() has not been constructed yet */
29789566063dSJacob Faibussowitsch   PetscCall(DMPlexGetJoin(subdm, numFaceVertices, subfaceVertices, &numFaces, &faces));
2979e6ccafaeSMatthew G Knepley #else
2980e6ccafaeSMatthew G Knepley   {
2981e6ccafaeSMatthew G Knepley     PetscInt f;
2982e6ccafaeSMatthew G Knepley 
2983e6ccafaeSMatthew G Knepley     numFaces = 0;
29849566063dSJacob Faibussowitsch     PetscCall(DMGetWorkArray(subdm, 1, MPIU_INT, (void **) &faces));
2985e6ccafaeSMatthew G Knepley     for (f = firstFace; f < *newFacePoint; ++f) {
2986e6ccafaeSMatthew G Knepley       PetscInt dof, off, d;
2987e6ccafaeSMatthew G Knepley 
29889566063dSJacob Faibussowitsch       PetscCall(PetscSectionGetDof(submesh->coneSection, f, &dof));
29899566063dSJacob Faibussowitsch       PetscCall(PetscSectionGetOffset(submesh->coneSection, f, &off));
2990e6ccafaeSMatthew G Knepley       /* Yes, I know this is quadratic, but I expect the sizes to be <5 */
2991e6ccafaeSMatthew G Knepley       for (d = 0; d < dof; ++d) {
2992e6ccafaeSMatthew G Knepley         const PetscInt p = submesh->cones[off+d];
2993e6ccafaeSMatthew G Knepley         PetscInt       v;
2994e6ccafaeSMatthew G Knepley 
2995e6ccafaeSMatthew G Knepley         for (v = 0; v < numFaceVertices; ++v) {
2996e6ccafaeSMatthew G Knepley           if (subfaceVertices[v] == p) break;
2997e6ccafaeSMatthew G Knepley         }
2998e6ccafaeSMatthew G Knepley         if (v == numFaceVertices) break;
2999e6ccafaeSMatthew G Knepley       }
3000e6ccafaeSMatthew G Knepley       if (d == dof) {
3001e6ccafaeSMatthew G Knepley         numFaces               = 1;
3002e6ccafaeSMatthew G Knepley         ((PetscInt*) faces)[0] = f;
3003e6ccafaeSMatthew G Knepley       }
3004e6ccafaeSMatthew G Knepley     }
3005e6ccafaeSMatthew G Knepley   }
3006e6ccafaeSMatthew G Knepley #endif
300763a3b9bcSJacob Faibussowitsch   PetscCheck(numFaces <= 1,comm, PETSC_ERR_ARG_WRONG, "Vertex set had %" PetscInt_FMT " faces, not one", numFaces);
3008e6ccafaeSMatthew G Knepley   else if (numFaces == 1) {
3009e6ccafaeSMatthew G Knepley     /* Add the other cell neighbor for this face */
30109566063dSJacob Faibussowitsch     PetscCall(DMPlexSetCone(subdm, subcell, faces));
3011e6ccafaeSMatthew G Knepley   } else {
3012e6ccafaeSMatthew G Knepley     PetscInt *indices, *origVertices, *orientedVertices, *orientedSubVertices, v, ov;
3013e6ccafaeSMatthew G Knepley     PetscBool posOriented;
3014e6ccafaeSMatthew G Knepley 
30159566063dSJacob Faibussowitsch     PetscCall(DMGetWorkArray(subdm, 4*numFaceVertices * sizeof(PetscInt), MPIU_INT, &orientedVertices));
3016e6ccafaeSMatthew G Knepley     origVertices        = &orientedVertices[numFaceVertices];
3017e6ccafaeSMatthew G Knepley     indices             = &orientedVertices[numFaceVertices*2];
3018e6ccafaeSMatthew G Knepley     orientedSubVertices = &orientedVertices[numFaceVertices*3];
30199566063dSJacob Faibussowitsch     PetscCall(DMPlexGetOrientedFace(dm, cell, numFaceVertices, faceVertices, numCorners, indices, origVertices, orientedVertices, &posOriented));
3020e6ccafaeSMatthew G Knepley     /* TODO: I know that routine should return a permutation, not the indices */
3021e6ccafaeSMatthew G Knepley     for (v = 0; v < numFaceVertices; ++v) {
3022e6ccafaeSMatthew G Knepley       const PetscInt vertex = faceVertices[v], subvertex = subfaceVertices[v];
3023e6ccafaeSMatthew G Knepley       for (ov = 0; ov < numFaceVertices; ++ov) {
3024e6ccafaeSMatthew G Knepley         if (orientedVertices[ov] == vertex) {
3025e6ccafaeSMatthew G Knepley           orientedSubVertices[ov] = subvertex;
3026e6ccafaeSMatthew G Knepley           break;
3027e6ccafaeSMatthew G Knepley         }
3028e6ccafaeSMatthew G Knepley       }
302963a3b9bcSJacob Faibussowitsch       PetscCheck(ov != numFaceVertices,comm, PETSC_ERR_PLIB, "Could not find face vertex %" PetscInt_FMT " in orientated set", vertex);
3030e6ccafaeSMatthew G Knepley     }
30319566063dSJacob Faibussowitsch     PetscCall(DMPlexSetCone(subdm, *newFacePoint, orientedSubVertices));
30329566063dSJacob Faibussowitsch     PetscCall(DMPlexSetCone(subdm, subcell, newFacePoint));
30339566063dSJacob Faibussowitsch     PetscCall(DMRestoreWorkArray(subdm, 4*numFaceVertices * sizeof(PetscInt), MPIU_INT, &orientedVertices));
3034e6ccafaeSMatthew G Knepley     ++(*newFacePoint);
3035e6ccafaeSMatthew G Knepley   }
3036ef07cca7SMatthew G. Knepley #if 0
30379566063dSJacob Faibussowitsch   PetscCall(DMPlexRestoreJoin(subdm, numFaceVertices, subfaceVertices, &numFaces, &faces));
3038ef07cca7SMatthew G. Knepley #else
30399566063dSJacob Faibussowitsch   PetscCall(DMRestoreWorkArray(subdm, 1, MPIU_INT, (void **) &faces));
3040ef07cca7SMatthew G. Knepley #endif
3041e6ccafaeSMatthew G Knepley   PetscFunctionReturn(0);
3042e6ccafaeSMatthew G Knepley }
3043e6ccafaeSMatthew G Knepley 
304453156dfcSMatthew G. Knepley static PetscErrorCode DMPlexCreateSubmesh_Uninterpolated(DM dm, DMLabel vertexLabel, PetscInt value, DM subdm)
3045e6ccafaeSMatthew G Knepley {
304682f516ccSBarry Smith   MPI_Comm        comm;
304753156dfcSMatthew G. Knepley   DMLabel         subpointMap;
3048efa14ee0SMatthew G Knepley   IS              subvertexIS,  subcellIS;
3049efa14ee0SMatthew G Knepley   const PetscInt *subVertices, *subCells;
3050efa14ee0SMatthew G Knepley   PetscInt        numSubVertices, firstSubVertex, numSubCells;
3051fed694aaSMatthew G. Knepley   PetscInt       *subface, maxConeSize, numSubFaces = 0, firstSubFace, newFacePoint, nFV = 0;
3052efa14ee0SMatthew G Knepley   PetscInt        vStart, vEnd, c, f;
3053e6ccafaeSMatthew G Knepley 
3054e6ccafaeSMatthew G Knepley   PetscFunctionBegin;
30559566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)dm,&comm));
3056efa14ee0SMatthew G Knepley   /* Create subpointMap which marks the submesh */
30579566063dSJacob Faibussowitsch   PetscCall(DMLabelCreate(PETSC_COMM_SELF, "subpoint_map", &subpointMap));
30589566063dSJacob Faibussowitsch   PetscCall(DMPlexSetSubpointMap(subdm, subpointMap));
30599566063dSJacob Faibussowitsch   PetscCall(DMLabelDestroy(&subpointMap));
30609566063dSJacob Faibussowitsch   if (vertexLabel) PetscCall(DMPlexMarkSubmesh_Uninterpolated(dm, vertexLabel, value, subpointMap, &numSubFaces, &nFV, subdm));
3061efa14ee0SMatthew G Knepley   /* Setup chart */
30629566063dSJacob Faibussowitsch   PetscCall(DMLabelGetStratumSize(subpointMap, 0, &numSubVertices));
30639566063dSJacob Faibussowitsch   PetscCall(DMLabelGetStratumSize(subpointMap, 2, &numSubCells));
30649566063dSJacob Faibussowitsch   PetscCall(DMPlexSetChart(subdm, 0, numSubCells+numSubFaces+numSubVertices));
30659566063dSJacob Faibussowitsch   PetscCall(DMPlexSetVTKCellHeight(subdm, 1));
3066e6ccafaeSMatthew G Knepley   /* Set cone sizes */
3067e6ccafaeSMatthew G Knepley   firstSubVertex = numSubCells;
3068efa14ee0SMatthew G Knepley   firstSubFace   = numSubCells+numSubVertices;
3069e6ccafaeSMatthew G Knepley   newFacePoint   = firstSubFace;
30709566063dSJacob Faibussowitsch   PetscCall(DMLabelGetStratumIS(subpointMap, 0, &subvertexIS));
30719566063dSJacob Faibussowitsch   if (subvertexIS) PetscCall(ISGetIndices(subvertexIS, &subVertices));
30729566063dSJacob Faibussowitsch   PetscCall(DMLabelGetStratumIS(subpointMap, 2, &subcellIS));
30739566063dSJacob Faibussowitsch   if (subcellIS) PetscCall(ISGetIndices(subcellIS, &subCells));
3074e6ccafaeSMatthew G Knepley   for (c = 0; c < numSubCells; ++c) {
30759566063dSJacob Faibussowitsch     PetscCall(DMPlexSetConeSize(subdm, c, 1));
3076e6ccafaeSMatthew G Knepley   }
3077e6ccafaeSMatthew G Knepley   for (f = firstSubFace; f < firstSubFace+numSubFaces; ++f) {
30789566063dSJacob Faibussowitsch     PetscCall(DMPlexSetConeSize(subdm, f, nFV));
3079e6ccafaeSMatthew G Knepley   }
30809566063dSJacob Faibussowitsch   PetscCall(DMSetUp(subdm));
3081e6ccafaeSMatthew G Knepley   /* Create face cones */
30829566063dSJacob Faibussowitsch   PetscCall(DMPlexGetDepthStratum(dm, 0, &vStart, &vEnd));
30839566063dSJacob Faibussowitsch   PetscCall(DMPlexGetMaxSizes(dm, &maxConeSize, NULL));
30849566063dSJacob Faibussowitsch   PetscCall(DMGetWorkArray(subdm, maxConeSize, MPIU_INT, (void**) &subface));
3085e6ccafaeSMatthew G Knepley   for (c = 0; c < numSubCells; ++c) {
3086e6ccafaeSMatthew G Knepley     const PetscInt cell    = subCells[c];
3087efa14ee0SMatthew G Knepley     const PetscInt subcell = c;
30880298fd71SBarry Smith     PetscInt      *closure = NULL;
3089efa14ee0SMatthew G Knepley     PetscInt       closureSize, cl, numCorners = 0, faceSize = 0;
3090e6ccafaeSMatthew G Knepley 
30919566063dSJacob Faibussowitsch     PetscCall(DMPlexGetTransitiveClosure(dm, cell, PETSC_TRUE, &closureSize, &closure));
3092efa14ee0SMatthew G Knepley     for (cl = 0; cl < closureSize*2; cl += 2) {
3093efa14ee0SMatthew G Knepley       const PetscInt point = closure[cl];
3094e6ccafaeSMatthew G Knepley       PetscInt       subVertex;
3095e6ccafaeSMatthew G Knepley 
3096efa14ee0SMatthew G Knepley       if ((point >= vStart) && (point < vEnd)) {
3097efa14ee0SMatthew G Knepley         ++numCorners;
30989566063dSJacob Faibussowitsch         PetscCall(PetscFindInt(point, numSubVertices, subVertices, &subVertex));
3099efa14ee0SMatthew G Knepley         if (subVertex >= 0) {
3100efa14ee0SMatthew G Knepley           closure[faceSize] = point;
310165560c7fSMatthew G Knepley           subface[faceSize] = firstSubVertex+subVertex;
3102e6ccafaeSMatthew G Knepley           ++faceSize;
3103e6ccafaeSMatthew G Knepley         }
3104e6ccafaeSMatthew G Knepley       }
3105e6ccafaeSMatthew G Knepley     }
310663a3b9bcSJacob Faibussowitsch     PetscCheck(faceSize <= nFV,comm, PETSC_ERR_ARG_WRONG, "Invalid submesh: Too many vertices %" PetscInt_FMT " of an element on the surface", faceSize);
3107efa14ee0SMatthew G Knepley     if (faceSize == nFV) {
31089566063dSJacob Faibussowitsch       PetscCall(DMPlexInsertFace_Internal(dm, subdm, faceSize, closure, subface, numCorners, cell, subcell, firstSubFace, &newFacePoint));
3109e6ccafaeSMatthew G Knepley     }
31109566063dSJacob Faibussowitsch     PetscCall(DMPlexRestoreTransitiveClosure(dm, cell, PETSC_TRUE, &closureSize, &closure));
3111e6ccafaeSMatthew G Knepley   }
31129566063dSJacob Faibussowitsch   PetscCall(DMRestoreWorkArray(subdm, maxConeSize, MPIU_INT, (void**) &subface));
31139566063dSJacob Faibussowitsch   PetscCall(DMPlexSymmetrize(subdm));
31149566063dSJacob Faibussowitsch   PetscCall(DMPlexStratify(subdm));
3115e6ccafaeSMatthew G Knepley   /* Build coordinates */
3116efa14ee0SMatthew G Knepley   {
3117efa14ee0SMatthew G Knepley     PetscSection coordSection, subCoordSection;
3118efa14ee0SMatthew G Knepley     Vec          coordinates, subCoordinates;
3119efa14ee0SMatthew G Knepley     PetscScalar *coords, *subCoords;
3120285d324eSMatthew G. Knepley     PetscInt     numComp, coordSize, v;
312124640c55SToby Isaac     const char  *name;
3122efa14ee0SMatthew G Knepley 
31239566063dSJacob Faibussowitsch     PetscCall(DMGetCoordinateSection(dm, &coordSection));
31249566063dSJacob Faibussowitsch     PetscCall(DMGetCoordinatesLocal(dm, &coordinates));
31259566063dSJacob Faibussowitsch     PetscCall(DMGetCoordinateSection(subdm, &subCoordSection));
31269566063dSJacob Faibussowitsch     PetscCall(PetscSectionSetNumFields(subCoordSection, 1));
31279566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetFieldComponents(coordSection, 0, &numComp));
31289566063dSJacob Faibussowitsch     PetscCall(PetscSectionSetFieldComponents(subCoordSection, 0, numComp));
31299566063dSJacob Faibussowitsch     PetscCall(PetscSectionSetChart(subCoordSection, firstSubVertex, firstSubVertex+numSubVertices));
3130efa14ee0SMatthew G Knepley     for (v = 0; v < numSubVertices; ++v) {
3131efa14ee0SMatthew G Knepley       const PetscInt vertex    = subVertices[v];
3132efa14ee0SMatthew G Knepley       const PetscInt subvertex = firstSubVertex+v;
3133efa14ee0SMatthew G Knepley       PetscInt       dof;
3134efa14ee0SMatthew G Knepley 
31359566063dSJacob Faibussowitsch       PetscCall(PetscSectionGetDof(coordSection, vertex, &dof));
31369566063dSJacob Faibussowitsch       PetscCall(PetscSectionSetDof(subCoordSection, subvertex, dof));
31379566063dSJacob Faibussowitsch       PetscCall(PetscSectionSetFieldDof(subCoordSection, subvertex, 0, dof));
3138e6ccafaeSMatthew G Knepley     }
31399566063dSJacob Faibussowitsch     PetscCall(PetscSectionSetUp(subCoordSection));
31409566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetStorageSize(subCoordSection, &coordSize));
31419566063dSJacob Faibussowitsch     PetscCall(VecCreate(PETSC_COMM_SELF, &subCoordinates));
31429566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetName((PetscObject)coordinates,&name));
31439566063dSJacob Faibussowitsch     PetscCall(PetscObjectSetName((PetscObject)subCoordinates,name));
31449566063dSJacob Faibussowitsch     PetscCall(VecSetSizes(subCoordinates, coordSize, PETSC_DETERMINE));
31459566063dSJacob Faibussowitsch     PetscCall(VecSetType(subCoordinates,VECSTANDARD));
3146830e53efSMatthew G. Knepley     if (coordSize) {
31479566063dSJacob Faibussowitsch       PetscCall(VecGetArray(coordinates,    &coords));
31489566063dSJacob Faibussowitsch       PetscCall(VecGetArray(subCoordinates, &subCoords));
3149efa14ee0SMatthew G Knepley       for (v = 0; v < numSubVertices; ++v) {
3150efa14ee0SMatthew G Knepley         const PetscInt vertex    = subVertices[v];
3151efa14ee0SMatthew G Knepley         const PetscInt subvertex = firstSubVertex+v;
3152efa14ee0SMatthew G Knepley         PetscInt       dof, off, sdof, soff, d;
3153e6ccafaeSMatthew G Knepley 
31549566063dSJacob Faibussowitsch         PetscCall(PetscSectionGetDof(coordSection, vertex, &dof));
31559566063dSJacob Faibussowitsch         PetscCall(PetscSectionGetOffset(coordSection, vertex, &off));
31569566063dSJacob Faibussowitsch         PetscCall(PetscSectionGetDof(subCoordSection, subvertex, &sdof));
31579566063dSJacob Faibussowitsch         PetscCall(PetscSectionGetOffset(subCoordSection, subvertex, &soff));
315863a3b9bcSJacob Faibussowitsch         PetscCheck(dof == sdof,comm, PETSC_ERR_PLIB, "Coordinate dimension %" PetscInt_FMT " on subvertex %" PetscInt_FMT ", vertex %" PetscInt_FMT " should be %" PetscInt_FMT, sdof, subvertex, vertex, dof);
3159e6ccafaeSMatthew G Knepley         for (d = 0; d < dof; ++d) subCoords[soff+d] = coords[off+d];
3160e6ccafaeSMatthew G Knepley       }
31619566063dSJacob Faibussowitsch       PetscCall(VecRestoreArray(coordinates,    &coords));
31629566063dSJacob Faibussowitsch       PetscCall(VecRestoreArray(subCoordinates, &subCoords));
31633b399e24SMatthew G. Knepley     }
31649566063dSJacob Faibussowitsch     PetscCall(DMSetCoordinatesLocal(subdm, subCoordinates));
31659566063dSJacob Faibussowitsch     PetscCall(VecDestroy(&subCoordinates));
3166e6ccafaeSMatthew G Knepley   }
3167efa14ee0SMatthew G Knepley   /* Cleanup */
31689566063dSJacob Faibussowitsch   if (subvertexIS) PetscCall(ISRestoreIndices(subvertexIS, &subVertices));
31699566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&subvertexIS));
31709566063dSJacob Faibussowitsch   if (subcellIS) PetscCall(ISRestoreIndices(subcellIS, &subCells));
31719566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&subcellIS));
3172e6ccafaeSMatthew G Knepley   PetscFunctionReturn(0);
3173e6ccafaeSMatthew G Knepley }
3174e6ccafaeSMatthew G Knepley 
3175d0609cedSBarry Smith /* TODO: Fix this to properly propogate up error conditions it may find */
31769fbee547SJacob Faibussowitsch static inline PetscInt DMPlexFilterPoint_Internal(PetscInt point, PetscInt firstSubPoint, PetscInt numSubPoints, const PetscInt subPoints[])
31773982b651SMatthew G. Knepley {
31783982b651SMatthew G. Knepley   PetscInt       subPoint;
31793982b651SMatthew G. Knepley   PetscErrorCode ierr;
31803982b651SMatthew G. Knepley 
3181d0609cedSBarry Smith   ierr = PetscFindInt(point, numSubPoints, subPoints, &subPoint); if (ierr) return -1;
31823982b651SMatthew G. Knepley   return subPoint < 0 ? subPoint : firstSubPoint+subPoint;
31833982b651SMatthew G. Knepley }
31843982b651SMatthew G. Knepley 
3185212103e5SMatthew Knepley static PetscErrorCode DMPlexFilterLabels_Internal(DM dm, const PetscInt numSubPoints[], const PetscInt *subpoints[], const PetscInt firstSubPoint[], DM subdm)
3186212103e5SMatthew Knepley {
3187212103e5SMatthew Knepley   PetscInt       Nl, l, d;
3188212103e5SMatthew Knepley 
3189212103e5SMatthew Knepley   PetscFunctionBegin;
31909566063dSJacob Faibussowitsch   PetscCall(DMGetNumLabels(dm, &Nl));
3191212103e5SMatthew Knepley   for (l = 0; l < Nl; ++l) {
3192212103e5SMatthew Knepley     DMLabel         label, newlabel;
3193212103e5SMatthew Knepley     const char     *lname;
3194d56405f8SMatthew G. Knepley     PetscBool       isDepth, isDim, isCelltype, isVTK;
3195212103e5SMatthew Knepley     IS              valueIS;
3196212103e5SMatthew Knepley     const PetscInt *values;
3197212103e5SMatthew Knepley     PetscInt        Nv, v;
3198212103e5SMatthew Knepley 
31999566063dSJacob Faibussowitsch     PetscCall(DMGetLabelName(dm, l, &lname));
32009566063dSJacob Faibussowitsch     PetscCall(PetscStrcmp(lname, "depth", &isDepth));
32019566063dSJacob Faibussowitsch     PetscCall(PetscStrcmp(lname, "dim", &isDim));
32029566063dSJacob Faibussowitsch     PetscCall(PetscStrcmp(lname, "celltype", &isCelltype));
32039566063dSJacob Faibussowitsch     PetscCall(PetscStrcmp(lname, "vtk", &isVTK));
3204d56405f8SMatthew G. Knepley     if (isDepth || isDim || isCelltype || isVTK) continue;
32059566063dSJacob Faibussowitsch     PetscCall(DMCreateLabel(subdm, lname));
32069566063dSJacob Faibussowitsch     PetscCall(DMGetLabel(dm, lname, &label));
32079566063dSJacob Faibussowitsch     PetscCall(DMGetLabel(subdm, lname, &newlabel));
32089566063dSJacob Faibussowitsch     PetscCall(DMLabelGetDefaultValue(label, &v));
32099566063dSJacob Faibussowitsch     PetscCall(DMLabelSetDefaultValue(newlabel, v));
32109566063dSJacob Faibussowitsch     PetscCall(DMLabelGetValueIS(label, &valueIS));
32119566063dSJacob Faibussowitsch     PetscCall(ISGetLocalSize(valueIS, &Nv));
32129566063dSJacob Faibussowitsch     PetscCall(ISGetIndices(valueIS, &values));
3213212103e5SMatthew Knepley     for (v = 0; v < Nv; ++v) {
3214212103e5SMatthew Knepley       IS              pointIS;
3215212103e5SMatthew Knepley       const PetscInt *points;
3216212103e5SMatthew Knepley       PetscInt        Np, p;
3217212103e5SMatthew Knepley 
32189566063dSJacob Faibussowitsch       PetscCall(DMLabelGetStratumIS(label, values[v], &pointIS));
32199566063dSJacob Faibussowitsch       PetscCall(ISGetLocalSize(pointIS, &Np));
32209566063dSJacob Faibussowitsch       PetscCall(ISGetIndices(pointIS, &points));
3221212103e5SMatthew Knepley       for (p = 0; p < Np; ++p) {
3222212103e5SMatthew Knepley         const PetscInt point = points[p];
3223212103e5SMatthew Knepley         PetscInt       subp;
3224212103e5SMatthew Knepley 
32259566063dSJacob Faibussowitsch         PetscCall(DMPlexGetPointDepth(dm, point, &d));
3226212103e5SMatthew Knepley         subp = DMPlexFilterPoint_Internal(point, firstSubPoint[d], numSubPoints[d], subpoints[d]);
32279566063dSJacob Faibussowitsch         if (subp >= 0) PetscCall(DMLabelSetValue(newlabel, subp, values[v]));
3228212103e5SMatthew Knepley       }
32299566063dSJacob Faibussowitsch       PetscCall(ISRestoreIndices(pointIS, &points));
32309566063dSJacob Faibussowitsch       PetscCall(ISDestroy(&pointIS));
3231212103e5SMatthew Knepley     }
32329566063dSJacob Faibussowitsch     PetscCall(ISRestoreIndices(valueIS, &values));
32339566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&valueIS));
3234212103e5SMatthew Knepley   }
3235212103e5SMatthew Knepley   PetscFunctionReturn(0);
3236212103e5SMatthew Knepley }
3237212103e5SMatthew Knepley 
3238158acfadSMatthew G. Knepley static PetscErrorCode DMPlexCreateSubmeshGeneric_Interpolated(DM dm, DMLabel label, PetscInt value, PetscBool markedFaces, PetscBool isCohesive, PetscInt cellHeight, DM subdm)
3239e6ccafaeSMatthew G Knepley {
324082f516ccSBarry Smith   MPI_Comm         comm;
324153156dfcSMatthew G. Knepley   DMLabel          subpointMap;
3242efa14ee0SMatthew G Knepley   IS              *subpointIS;
3243efa14ee0SMatthew G Knepley   const PetscInt **subpoints;
32443982b651SMatthew G. Knepley   PetscInt        *numSubPoints, *firstSubPoint, *coneNew, *orntNew;
3245412e9a14SMatthew G. Knepley   PetscInt         totSubPoints = 0, maxConeSize, dim, p, d, v;
32460d366550SMatthew G. Knepley   PetscMPIInt      rank;
3247e6ccafaeSMatthew G Knepley 
3248e6ccafaeSMatthew G Knepley   PetscFunctionBegin;
32499566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)dm,&comm));
32509566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(comm, &rank));
3251efa14ee0SMatthew G Knepley   /* Create subpointMap which marks the submesh */
32529566063dSJacob Faibussowitsch   PetscCall(DMLabelCreate(PETSC_COMM_SELF, "subpoint_map", &subpointMap));
32539566063dSJacob Faibussowitsch   PetscCall(DMPlexSetSubpointMap(subdm, subpointMap));
3254bec263e5SMatthew G. Knepley   if (cellHeight) {
32559566063dSJacob Faibussowitsch     if (isCohesive) PetscCall(DMPlexMarkCohesiveSubmesh_Interpolated(dm, label, value, subpointMap, subdm));
32569566063dSJacob Faibussowitsch     else            PetscCall(DMPlexMarkSubmesh_Interpolated(dm, label, value, markedFaces, subpointMap, subdm));
3257bec263e5SMatthew G. Knepley   } else {
3258bec263e5SMatthew G. Knepley     DMLabel         depth;
3259bec263e5SMatthew G. Knepley     IS              pointIS;
3260bec263e5SMatthew G. Knepley     const PetscInt *points;
3261b85c8bf9SMatthew G. Knepley     PetscInt        numPoints=0;
3262bec263e5SMatthew G. Knepley 
32639566063dSJacob Faibussowitsch     PetscCall(DMPlexGetDepthLabel(dm, &depth));
32649566063dSJacob Faibussowitsch     PetscCall(DMLabelGetStratumIS(label, value, &pointIS));
3265b85c8bf9SMatthew G. Knepley     if (pointIS) {
32669566063dSJacob Faibussowitsch       PetscCall(ISGetIndices(pointIS, &points));
32679566063dSJacob Faibussowitsch       PetscCall(ISGetLocalSize(pointIS, &numPoints));
3268b85c8bf9SMatthew G. Knepley     }
3269bec263e5SMatthew G. Knepley     for (p = 0; p < numPoints; ++p) {
3270bec263e5SMatthew G. Knepley       PetscInt *closure = NULL;
3271bec263e5SMatthew G. Knepley       PetscInt  closureSize, c, pdim;
3272bec263e5SMatthew G. Knepley 
32739566063dSJacob Faibussowitsch       PetscCall(DMPlexGetTransitiveClosure(dm, points[p], PETSC_TRUE, &closureSize, &closure));
3274bec263e5SMatthew G. Knepley       for (c = 0; c < closureSize*2; c += 2) {
32759566063dSJacob Faibussowitsch         PetscCall(DMLabelGetValue(depth, closure[c], &pdim));
32769566063dSJacob Faibussowitsch         PetscCall(DMLabelSetValue(subpointMap, closure[c], pdim));
3277bec263e5SMatthew G. Knepley       }
32789566063dSJacob Faibussowitsch       PetscCall(DMPlexRestoreTransitiveClosure(dm, points[p], PETSC_TRUE, &closureSize, &closure));
3279bec263e5SMatthew G. Knepley     }
32809566063dSJacob Faibussowitsch     if (pointIS) PetscCall(ISRestoreIndices(pointIS, &points));
32819566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&pointIS));
3282bec263e5SMatthew G. Knepley   }
3283efa14ee0SMatthew G Knepley   /* Setup chart */
32849566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dm, &dim));
32859566063dSJacob Faibussowitsch   PetscCall(PetscMalloc4(dim+1,&numSubPoints,dim+1,&firstSubPoint,dim+1,&subpointIS,dim+1,&subpoints));
3286e6ccafaeSMatthew G Knepley   for (d = 0; d <= dim; ++d) {
32879566063dSJacob Faibussowitsch     PetscCall(DMLabelGetStratumSize(subpointMap, d, &numSubPoints[d]));
3288e6ccafaeSMatthew G Knepley     totSubPoints += numSubPoints[d];
3289e6ccafaeSMatthew G Knepley   }
32909566063dSJacob Faibussowitsch   PetscCall(DMPlexSetChart(subdm, 0, totSubPoints));
32919566063dSJacob Faibussowitsch   PetscCall(DMPlexSetVTKCellHeight(subdm, cellHeight));
3292e6ccafaeSMatthew G Knepley   /* Set cone sizes */
3293e6ccafaeSMatthew G Knepley   firstSubPoint[dim] = 0;
3294e6ccafaeSMatthew G Knepley   firstSubPoint[0]   = firstSubPoint[dim] + numSubPoints[dim];
3295e6ccafaeSMatthew G Knepley   if (dim > 1) {firstSubPoint[dim-1] = firstSubPoint[0]     + numSubPoints[0];}
3296e6ccafaeSMatthew G Knepley   if (dim > 2) {firstSubPoint[dim-2] = firstSubPoint[dim-1] + numSubPoints[dim-1];}
3297e6ccafaeSMatthew G Knepley   for (d = 0; d <= dim; ++d) {
32989566063dSJacob Faibussowitsch     PetscCall(DMLabelGetStratumIS(subpointMap, d, &subpointIS[d]));
32999566063dSJacob Faibussowitsch     if (subpointIS[d]) PetscCall(ISGetIndices(subpointIS[d], &subpoints[d]));
3300e6ccafaeSMatthew G Knepley   }
3301412e9a14SMatthew G. Knepley   /* We do not want this label automatically computed, instead we compute it here */
33029566063dSJacob Faibussowitsch   PetscCall(DMCreateLabel(subdm, "celltype"));
3303e6ccafaeSMatthew G Knepley   for (d = 0; d <= dim; ++d) {
3304e6ccafaeSMatthew G Knepley     for (p = 0; p < numSubPoints[d]; ++p) {
3305e6ccafaeSMatthew G Knepley       const PetscInt  point    = subpoints[d][p];
3306e6ccafaeSMatthew G Knepley       const PetscInt  subpoint = firstSubPoint[d] + p;
3307e6ccafaeSMatthew G Knepley       const PetscInt *cone;
330815100a53SVaclav Hapla       PetscInt        coneSize;
3309e6ccafaeSMatthew G Knepley 
33109566063dSJacob Faibussowitsch       PetscCall(DMPlexGetConeSize(dm, point, &coneSize));
3311bec263e5SMatthew G. Knepley       if (cellHeight && (d == dim)) {
331215100a53SVaclav Hapla         PetscInt coneSizeNew, c, val;
331315100a53SVaclav Hapla 
33149566063dSJacob Faibussowitsch         PetscCall(DMPlexGetCone(dm, point, &cone));
3315e6ccafaeSMatthew G Knepley         for (c = 0, coneSizeNew = 0; c < coneSize; ++c) {
33169566063dSJacob Faibussowitsch           PetscCall(DMLabelGetValue(subpointMap, cone[c], &val));
3317e6ccafaeSMatthew G Knepley           if (val >= 0) coneSizeNew++;
3318e6ccafaeSMatthew G Knepley         }
33199566063dSJacob Faibussowitsch         PetscCall(DMPlexSetConeSize(subdm, subpoint, coneSizeNew));
33209566063dSJacob Faibussowitsch         PetscCall(DMPlexSetCellType(subdm, subpoint, DM_POLYTOPE_FV_GHOST));
332115100a53SVaclav Hapla       } else {
332215100a53SVaclav Hapla         DMPolytopeType  ct;
332315100a53SVaclav Hapla 
332415100a53SVaclav Hapla         PetscCall(DMPlexSetConeSize(subdm, subpoint, coneSize));
332515100a53SVaclav Hapla         PetscCall(DMPlexGetCellType(dm, point, &ct));
332615100a53SVaclav Hapla         PetscCall(DMPlexSetCellType(subdm, subpoint, ct));
3327e6ccafaeSMatthew G Knepley       }
3328e6ccafaeSMatthew G Knepley     }
3329e6ccafaeSMatthew G Knepley   }
33309566063dSJacob Faibussowitsch   PetscCall(DMLabelDestroy(&subpointMap));
33319566063dSJacob Faibussowitsch   PetscCall(DMSetUp(subdm));
3332e6ccafaeSMatthew G Knepley   /* Set cones */
33339566063dSJacob Faibussowitsch   PetscCall(DMPlexGetMaxSizes(dm, &maxConeSize, NULL));
33349566063dSJacob Faibussowitsch   PetscCall(PetscMalloc2(maxConeSize,&coneNew,maxConeSize,&orntNew));
3335e6ccafaeSMatthew G Knepley   for (d = 0; d <= dim; ++d) {
3336e6ccafaeSMatthew G Knepley     for (p = 0; p < numSubPoints[d]; ++p) {
3337e6ccafaeSMatthew G Knepley       const PetscInt  point    = subpoints[d][p];
3338e6ccafaeSMatthew G Knepley       const PetscInt  subpoint = firstSubPoint[d] + p;
33390e49e2e2SMatthew G. Knepley       const PetscInt *cone, *ornt;
33400d366550SMatthew G. Knepley       PetscInt        coneSize, subconeSize, coneSizeNew, c, subc, fornt = 0;
3341e6ccafaeSMatthew G Knepley 
33420d366550SMatthew G. Knepley       if (d == dim-1) {
33430d366550SMatthew G. Knepley         const PetscInt *support, *cone, *ornt;
33440d366550SMatthew G. Knepley         PetscInt        supportSize, coneSize, s, subc;
33450d366550SMatthew G. Knepley 
33469566063dSJacob Faibussowitsch         PetscCall(DMPlexGetSupport(dm, point, &support));
33479566063dSJacob Faibussowitsch         PetscCall(DMPlexGetSupportSize(dm, point, &supportSize));
33480d366550SMatthew G. Knepley         for (s = 0; s < supportSize; ++s) {
3349412e9a14SMatthew G. Knepley           PetscBool isHybrid;
3350412e9a14SMatthew G. Knepley 
33519566063dSJacob Faibussowitsch           PetscCall(DMPlexCellIsHybrid_Internal(dm, support[s], &isHybrid));
3352412e9a14SMatthew G. Knepley           if (!isHybrid) continue;
33539566063dSJacob Faibussowitsch           PetscCall(PetscFindInt(support[s], numSubPoints[d+1], subpoints[d+1], &subc));
33540d366550SMatthew G. Knepley           if (subc >= 0) {
33550d366550SMatthew G. Knepley             const PetscInt ccell = subpoints[d+1][subc];
33560d366550SMatthew G. Knepley 
33579566063dSJacob Faibussowitsch             PetscCall(DMPlexGetCone(dm, ccell, &cone));
33589566063dSJacob Faibussowitsch             PetscCall(DMPlexGetConeSize(dm, ccell, &coneSize));
33599566063dSJacob Faibussowitsch             PetscCall(DMPlexGetConeOrientation(dm, ccell, &ornt));
33600d366550SMatthew G. Knepley             for (c = 0; c < coneSize; ++c) {
33610d366550SMatthew G. Knepley               if (cone[c] == point) {
33620d366550SMatthew G. Knepley                 fornt = ornt[c];
33630d366550SMatthew G. Knepley                 break;
33640d366550SMatthew G. Knepley               }
33650d366550SMatthew G. Knepley             }
33660d366550SMatthew G. Knepley             break;
33670d366550SMatthew G. Knepley           }
33680d366550SMatthew G. Knepley         }
33690d366550SMatthew G. Knepley       }
33709566063dSJacob Faibussowitsch       PetscCall(DMPlexGetConeSize(dm, point, &coneSize));
33719566063dSJacob Faibussowitsch       PetscCall(DMPlexGetConeSize(subdm, subpoint, &subconeSize));
33729566063dSJacob Faibussowitsch       PetscCall(DMPlexGetCone(dm, point, &cone));
33739566063dSJacob Faibussowitsch       PetscCall(DMPlexGetConeOrientation(dm, point, &ornt));
3374e6ccafaeSMatthew G Knepley       for (c = 0, coneSizeNew = 0; c < coneSize; ++c) {
33759566063dSJacob Faibussowitsch         PetscCall(PetscFindInt(cone[c], numSubPoints[d-1], subpoints[d-1], &subc));
337601a2673eSMatthew G. Knepley         if (subc >= 0) {
337701a2673eSMatthew G. Knepley           coneNew[coneSizeNew] = firstSubPoint[d-1] + subc;
33783982b651SMatthew G. Knepley           orntNew[coneSizeNew] = ornt[c];
337901a2673eSMatthew G. Knepley           ++coneSizeNew;
338001a2673eSMatthew G. Knepley         }
3381e6ccafaeSMatthew G Knepley       }
338263a3b9bcSJacob Faibussowitsch       PetscCheck(coneSizeNew == subconeSize,comm, PETSC_ERR_PLIB, "Number of cone points located %" PetscInt_FMT " does not match subcone size %" PetscInt_FMT, coneSizeNew, subconeSize);
33839566063dSJacob Faibussowitsch       PetscCall(DMPlexSetCone(subdm, subpoint, coneNew));
33849566063dSJacob Faibussowitsch       PetscCall(DMPlexSetConeOrientation(subdm, subpoint, orntNew));
33859566063dSJacob Faibussowitsch       if (fornt < 0) PetscCall(DMPlexOrientPoint(subdm, subpoint, fornt));
3386e6ccafaeSMatthew G Knepley     }
3387e6ccafaeSMatthew G Knepley   }
33889566063dSJacob Faibussowitsch   PetscCall(PetscFree2(coneNew,orntNew));
33899566063dSJacob Faibussowitsch   PetscCall(DMPlexSymmetrize(subdm));
33909566063dSJacob Faibussowitsch   PetscCall(DMPlexStratify(subdm));
3391e6ccafaeSMatthew G Knepley   /* Build coordinates */
3392e6ccafaeSMatthew G Knepley   {
3393e6ccafaeSMatthew G Knepley     PetscSection coordSection, subCoordSection;
3394e6ccafaeSMatthew G Knepley     Vec          coordinates, subCoordinates;
3395e6ccafaeSMatthew G Knepley     PetscScalar *coords, *subCoords;
3396c0e8cf5fSMatthew G. Knepley     PetscInt     cdim, numComp, coordSize;
339724640c55SToby Isaac     const char  *name;
3398e6ccafaeSMatthew G Knepley 
33999566063dSJacob Faibussowitsch     PetscCall(DMGetCoordinateDim(dm, &cdim));
34009566063dSJacob Faibussowitsch     PetscCall(DMGetCoordinateSection(dm, &coordSection));
34019566063dSJacob Faibussowitsch     PetscCall(DMGetCoordinatesLocal(dm, &coordinates));
34029566063dSJacob Faibussowitsch     PetscCall(DMGetCoordinateSection(subdm, &subCoordSection));
34039566063dSJacob Faibussowitsch     PetscCall(PetscSectionSetNumFields(subCoordSection, 1));
34049566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetFieldComponents(coordSection, 0, &numComp));
34059566063dSJacob Faibussowitsch     PetscCall(PetscSectionSetFieldComponents(subCoordSection, 0, numComp));
34069566063dSJacob Faibussowitsch     PetscCall(PetscSectionSetChart(subCoordSection, firstSubPoint[0], firstSubPoint[0]+numSubPoints[0]));
3407e6ccafaeSMatthew G Knepley     for (v = 0; v < numSubPoints[0]; ++v) {
3408e6ccafaeSMatthew G Knepley       const PetscInt vertex    = subpoints[0][v];
3409e6ccafaeSMatthew G Knepley       const PetscInt subvertex = firstSubPoint[0]+v;
3410e6ccafaeSMatthew G Knepley       PetscInt       dof;
3411e6ccafaeSMatthew G Knepley 
34129566063dSJacob Faibussowitsch       PetscCall(PetscSectionGetDof(coordSection, vertex, &dof));
34139566063dSJacob Faibussowitsch       PetscCall(PetscSectionSetDof(subCoordSection, subvertex, dof));
34149566063dSJacob Faibussowitsch       PetscCall(PetscSectionSetFieldDof(subCoordSection, subvertex, 0, dof));
3415e6ccafaeSMatthew G Knepley     }
34169566063dSJacob Faibussowitsch     PetscCall(PetscSectionSetUp(subCoordSection));
34179566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetStorageSize(subCoordSection, &coordSize));
34189566063dSJacob Faibussowitsch     PetscCall(VecCreate(PETSC_COMM_SELF, &subCoordinates));
34199566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetName((PetscObject)coordinates,&name));
34209566063dSJacob Faibussowitsch     PetscCall(PetscObjectSetName((PetscObject)subCoordinates,name));
34219566063dSJacob Faibussowitsch     PetscCall(VecSetSizes(subCoordinates, coordSize, PETSC_DETERMINE));
34229566063dSJacob Faibussowitsch     PetscCall(VecSetBlockSize(subCoordinates, cdim));
34239566063dSJacob Faibussowitsch     PetscCall(VecSetType(subCoordinates,VECSTANDARD));
34249566063dSJacob Faibussowitsch     PetscCall(VecGetArray(coordinates,    &coords));
34259566063dSJacob Faibussowitsch     PetscCall(VecGetArray(subCoordinates, &subCoords));
3426e6ccafaeSMatthew G Knepley     for (v = 0; v < numSubPoints[0]; ++v) {
3427e6ccafaeSMatthew G Knepley       const PetscInt vertex    = subpoints[0][v];
3428e6ccafaeSMatthew G Knepley       const PetscInt subvertex = firstSubPoint[0]+v;
3429e6ccafaeSMatthew G Knepley       PetscInt dof, off, sdof, soff, d;
3430e6ccafaeSMatthew G Knepley 
34319566063dSJacob Faibussowitsch       PetscCall(PetscSectionGetDof(coordSection, vertex, &dof));
34329566063dSJacob Faibussowitsch       PetscCall(PetscSectionGetOffset(coordSection, vertex, &off));
34339566063dSJacob Faibussowitsch       PetscCall(PetscSectionGetDof(subCoordSection, subvertex, &sdof));
34349566063dSJacob Faibussowitsch       PetscCall(PetscSectionGetOffset(subCoordSection, subvertex, &soff));
343563a3b9bcSJacob Faibussowitsch       PetscCheck(dof == sdof,comm, PETSC_ERR_PLIB, "Coordinate dimension %" PetscInt_FMT " on subvertex %" PetscInt_FMT ", vertex %" PetscInt_FMT " should be %" PetscInt_FMT, sdof, subvertex, vertex, dof);
3436efa14ee0SMatthew G Knepley       for (d = 0; d < dof; ++d) subCoords[soff+d] = coords[off+d];
3437e6ccafaeSMatthew G Knepley     }
34389566063dSJacob Faibussowitsch     PetscCall(VecRestoreArray(coordinates,    &coords));
34399566063dSJacob Faibussowitsch     PetscCall(VecRestoreArray(subCoordinates, &subCoords));
34409566063dSJacob Faibussowitsch     PetscCall(DMSetCoordinatesLocal(subdm, subCoordinates));
34419566063dSJacob Faibussowitsch     PetscCall(VecDestroy(&subCoordinates));
3442e6ccafaeSMatthew G Knepley   }
34433982b651SMatthew G. Knepley   /* Build SF: We need this complexity because subpoints might not be selected on the owning process */
34443982b651SMatthew G. Knepley   {
34453982b651SMatthew G. Knepley     PetscSF            sfPoint, sfPointSub;
34463982b651SMatthew G. Knepley     IS                 subpIS;
34473982b651SMatthew G. Knepley     const PetscSFNode *remotePoints;
34483982b651SMatthew G. Knepley     PetscSFNode       *sremotePoints, *newLocalPoints, *newOwners;
34493982b651SMatthew G. Knepley     const PetscInt    *localPoints, *subpoints;
34503982b651SMatthew G. Knepley     PetscInt          *slocalPoints;
34513982b651SMatthew G. Knepley     PetscInt           numRoots, numLeaves, numSubpoints = 0, numSubroots, numSubleaves = 0, l, sl, ll, pStart, pEnd, p;
34523982b651SMatthew G. Knepley     PetscMPIInt        rank;
34533982b651SMatthew G. Knepley 
34549566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject) dm), &rank));
34559566063dSJacob Faibussowitsch     PetscCall(DMGetPointSF(dm, &sfPoint));
34569566063dSJacob Faibussowitsch     PetscCall(DMGetPointSF(subdm, &sfPointSub));
34579566063dSJacob Faibussowitsch     PetscCall(DMPlexGetChart(dm, &pStart, &pEnd));
34589566063dSJacob Faibussowitsch     PetscCall(DMPlexGetChart(subdm, NULL, &numSubroots));
34599566063dSJacob Faibussowitsch     PetscCall(DMPlexGetSubpointIS(subdm, &subpIS));
34603982b651SMatthew G. Knepley     if (subpIS) {
34619566063dSJacob Faibussowitsch       PetscCall(ISGetIndices(subpIS, &subpoints));
34629566063dSJacob Faibussowitsch       PetscCall(ISGetLocalSize(subpIS, &numSubpoints));
34633982b651SMatthew G. Knepley     }
34649566063dSJacob Faibussowitsch     PetscCall(PetscSFGetGraph(sfPoint, &numRoots, &numLeaves, &localPoints, &remotePoints));
34653982b651SMatthew G. Knepley     if (numRoots >= 0) {
34669566063dSJacob Faibussowitsch       PetscCall(PetscMalloc2(pEnd-pStart,&newLocalPoints,numRoots,&newOwners));
34673982b651SMatthew G. Knepley       for (p = 0; p < pEnd-pStart; ++p) {
34683982b651SMatthew G. Knepley         newLocalPoints[p].rank  = -2;
34693982b651SMatthew G. Knepley         newLocalPoints[p].index = -2;
34703982b651SMatthew G. Knepley       }
34713982b651SMatthew G. Knepley       /* Set subleaves */
34723982b651SMatthew G. Knepley       for (l = 0; l < numLeaves; ++l) {
34733982b651SMatthew G. Knepley         const PetscInt point    = localPoints[l];
34743982b651SMatthew G. Knepley         const PetscInt subpoint = DMPlexFilterPoint_Internal(point, 0, numSubpoints, subpoints);
34753982b651SMatthew G. Knepley 
34763982b651SMatthew G. Knepley         if (subpoint < 0) continue;
34773982b651SMatthew G. Knepley         newLocalPoints[point-pStart].rank  = rank;
34783982b651SMatthew G. Knepley         newLocalPoints[point-pStart].index = subpoint;
34793982b651SMatthew G. Knepley         ++numSubleaves;
34803982b651SMatthew G. Knepley       }
34813982b651SMatthew G. Knepley       /* Must put in owned subpoints */
34823982b651SMatthew G. Knepley       for (p = pStart; p < pEnd; ++p) {
34833982b651SMatthew G. Knepley         const PetscInt subpoint = DMPlexFilterPoint_Internal(p, 0, numSubpoints, subpoints);
34843982b651SMatthew G. Knepley 
34853982b651SMatthew G. Knepley         if (subpoint < 0) {
34863982b651SMatthew G. Knepley           newOwners[p-pStart].rank  = -3;
34873982b651SMatthew G. Knepley           newOwners[p-pStart].index = -3;
34883982b651SMatthew G. Knepley         } else {
34893982b651SMatthew G. Knepley           newOwners[p-pStart].rank  = rank;
34903982b651SMatthew G. Knepley           newOwners[p-pStart].index = subpoint;
34913982b651SMatthew G. Knepley         }
34923982b651SMatthew G. Knepley       }
34939566063dSJacob Faibussowitsch       PetscCall(PetscSFReduceBegin(sfPoint, MPIU_2INT, newLocalPoints, newOwners, MPI_MAXLOC));
34949566063dSJacob Faibussowitsch       PetscCall(PetscSFReduceEnd(sfPoint, MPIU_2INT, newLocalPoints, newOwners, MPI_MAXLOC));
34959566063dSJacob Faibussowitsch       PetscCall(PetscSFBcastBegin(sfPoint, MPIU_2INT, newOwners, newLocalPoints,MPI_REPLACE));
34969566063dSJacob Faibussowitsch       PetscCall(PetscSFBcastEnd(sfPoint, MPIU_2INT, newOwners, newLocalPoints,MPI_REPLACE));
34979566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(numSubleaves, &slocalPoints));
34989566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(numSubleaves, &sremotePoints));
34993982b651SMatthew G. Knepley       for (l = 0, sl = 0, ll = 0; l < numLeaves; ++l) {
35003982b651SMatthew G. Knepley         const PetscInt point    = localPoints[l];
35013982b651SMatthew G. Knepley         const PetscInt subpoint = DMPlexFilterPoint_Internal(point, 0, numSubpoints, subpoints);
35023982b651SMatthew G. Knepley 
35033982b651SMatthew G. Knepley         if (subpoint < 0) continue;
35043982b651SMatthew G. Knepley         if (newLocalPoints[point].rank == rank) {++ll; continue;}
35053982b651SMatthew G. Knepley         slocalPoints[sl]        = subpoint;
35063982b651SMatthew G. Knepley         sremotePoints[sl].rank  = newLocalPoints[point].rank;
35073982b651SMatthew G. Knepley         sremotePoints[sl].index = newLocalPoints[point].index;
350863a3b9bcSJacob Faibussowitsch         PetscCheck(sremotePoints[sl].rank  >= 0,PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid remote rank for local point %" PetscInt_FMT, point);
350963a3b9bcSJacob Faibussowitsch         PetscCheck(sremotePoints[sl].index >= 0,PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid remote subpoint for local point %" PetscInt_FMT, point);
35103982b651SMatthew G. Knepley         ++sl;
35113982b651SMatthew G. Knepley       }
35121dca8a05SBarry Smith       PetscCheck(sl + ll == numSubleaves,PETSC_COMM_SELF, PETSC_ERR_PLIB, "Mismatch in number of subleaves %" PetscInt_FMT " + %" PetscInt_FMT " != %" PetscInt_FMT, sl, ll, numSubleaves);
35139566063dSJacob Faibussowitsch       PetscCall(PetscFree2(newLocalPoints,newOwners));
35149566063dSJacob Faibussowitsch       PetscCall(PetscSFSetGraph(sfPointSub, numSubroots, sl, slocalPoints, PETSC_OWN_POINTER, sremotePoints, PETSC_OWN_POINTER));
35153982b651SMatthew G. Knepley     }
35163982b651SMatthew G. Knepley     if (subpIS) {
35179566063dSJacob Faibussowitsch       PetscCall(ISRestoreIndices(subpIS, &subpoints));
35183982b651SMatthew G. Knepley     }
35193982b651SMatthew G. Knepley   }
3520212103e5SMatthew Knepley   /* Filter labels */
35219566063dSJacob Faibussowitsch   PetscCall(DMPlexFilterLabels_Internal(dm, numSubPoints, subpoints, firstSubPoint, subdm));
3522efa14ee0SMatthew G Knepley   /* Cleanup */
3523e6ccafaeSMatthew G Knepley   for (d = 0; d <= dim; ++d) {
35249566063dSJacob Faibussowitsch     if (subpointIS[d]) PetscCall(ISRestoreIndices(subpointIS[d], &subpoints[d]));
35259566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&subpointIS[d]));
3526e6ccafaeSMatthew G Knepley   }
35279566063dSJacob Faibussowitsch   PetscCall(PetscFree4(numSubPoints,firstSubPoint,subpointIS,subpoints));
3528e6ccafaeSMatthew G Knepley   PetscFunctionReturn(0);
3529e6ccafaeSMatthew G Knepley }
3530e6ccafaeSMatthew G Knepley 
3531158acfadSMatthew G. Knepley static PetscErrorCode DMPlexCreateSubmesh_Interpolated(DM dm, DMLabel vertexLabel, PetscInt value, PetscBool markedFaces, DM subdm)
35323982b651SMatthew G. Knepley {
35333982b651SMatthew G. Knepley   PetscFunctionBegin;
35349566063dSJacob Faibussowitsch   PetscCall(DMPlexCreateSubmeshGeneric_Interpolated(dm, vertexLabel, value, markedFaces, PETSC_FALSE, 1, subdm));
35353982b651SMatthew G. Knepley   PetscFunctionReturn(0);
35363982b651SMatthew G. Knepley }
35373982b651SMatthew G. Knepley 
3538d0fa310fSMatthew G. Knepley /*@
3539e6ccafaeSMatthew G Knepley   DMPlexCreateSubmesh - Extract a hypersurface from the mesh using vertices defined by a label
3540e6ccafaeSMatthew G Knepley 
3541e6ccafaeSMatthew G Knepley   Input Parameters:
3542e6ccafaeSMatthew G Knepley + dm           - The original mesh
3543158acfadSMatthew G. Knepley . vertexLabel  - The DMLabel marking points contained in the surface
3544158acfadSMatthew G. Knepley . value        - The label value to use
3545158acfadSMatthew G. Knepley - markedFaces  - PETSC_TRUE if surface faces are marked in addition to vertices, PETSC_FALSE if only vertices are marked
3546e6ccafaeSMatthew G Knepley 
3547e6ccafaeSMatthew G Knepley   Output Parameter:
3548e6ccafaeSMatthew G Knepley . subdm - The surface mesh
3549e6ccafaeSMatthew G Knepley 
3550e6ccafaeSMatthew G Knepley   Note: This function produces a DMLabel mapping original points in the submesh to their depth. This can be obtained using DMPlexGetSubpointMap().
3551e6ccafaeSMatthew G Knepley 
3552e6ccafaeSMatthew G Knepley   Level: developer
3553e6ccafaeSMatthew G Knepley 
3554db781477SPatrick Sanan .seealso: `DMPlexGetSubpointMap()`, `DMGetLabel()`, `DMLabelSetValue()`
3555830e53efSMatthew G. Knepley @*/
3556158acfadSMatthew G. Knepley PetscErrorCode DMPlexCreateSubmesh(DM dm, DMLabel vertexLabel, PetscInt value, PetscBool markedFaces, DM *subdm)
3557e6ccafaeSMatthew G Knepley {
3558827c4036SVaclav Hapla   DMPlexInterpolatedFlag interpolated;
3559827c4036SVaclav Hapla   PetscInt       dim, cdim;
3560e6ccafaeSMatthew G Knepley 
3561e6ccafaeSMatthew G Knepley   PetscFunctionBegin;
3562e6ccafaeSMatthew G Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
3563064a246eSJacob Faibussowitsch   PetscValidPointer(subdm, 5);
35649566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dm, &dim));
35659566063dSJacob Faibussowitsch   PetscCall(DMCreate(PetscObjectComm((PetscObject)dm), subdm));
35669566063dSJacob Faibussowitsch   PetscCall(DMSetType(*subdm, DMPLEX));
35679566063dSJacob Faibussowitsch   PetscCall(DMSetDimension(*subdm, dim-1));
35689566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateDim(dm, &cdim));
35699566063dSJacob Faibussowitsch   PetscCall(DMSetCoordinateDim(*subdm, cdim));
35709566063dSJacob Faibussowitsch   PetscCall(DMPlexIsInterpolated(dm, &interpolated));
357108401ef6SPierre Jolivet   PetscCheck(interpolated != DMPLEX_INTERPOLATED_PARTIAL,PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Not for partially interpolated meshes");
3572827c4036SVaclav Hapla   if (interpolated) {
35739566063dSJacob Faibussowitsch     PetscCall(DMPlexCreateSubmesh_Interpolated(dm, vertexLabel, value, markedFaces, *subdm));
3574e6ccafaeSMatthew G Knepley   } else {
35759566063dSJacob Faibussowitsch     PetscCall(DMPlexCreateSubmesh_Uninterpolated(dm, vertexLabel, value, *subdm));
3576e6ccafaeSMatthew G Knepley   }
35775de52c6dSVaclav Hapla   PetscCall(DMPlexCopy_Internal(dm, PETSC_TRUE, PETSC_TRUE, *subdm));
3578e6ccafaeSMatthew G Knepley   PetscFunctionReturn(0);
3579e6ccafaeSMatthew G Knepley }
3580e6ccafaeSMatthew G Knepley 
358127c04023SMatthew G. Knepley static PetscErrorCode DMPlexCreateCohesiveSubmesh_Uninterpolated(DM dm, PetscBool hasLagrange, const char label[], PetscInt value, DM subdm)
3582766ab985SMatthew G. Knepley {
3583766ab985SMatthew G. Knepley   MPI_Comm        comm;
3584766ab985SMatthew G. Knepley   DMLabel         subpointMap;
3585766ab985SMatthew G. Knepley   IS              subvertexIS;
3586766ab985SMatthew G. Knepley   const PetscInt *subVertices;
3587fed694aaSMatthew G. Knepley   PetscInt        numSubVertices, firstSubVertex, numSubCells, *subCells = NULL;
3588766ab985SMatthew G. Knepley   PetscInt       *subface, maxConeSize, numSubFaces, firstSubFace, newFacePoint, nFV;
3589412e9a14SMatthew G. Knepley   PetscInt        c, f;
3590766ab985SMatthew G. Knepley 
3591766ab985SMatthew G. Knepley   PetscFunctionBegin;
35929566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)dm, &comm));
3593766ab985SMatthew G. Knepley   /* Create subpointMap which marks the submesh */
35949566063dSJacob Faibussowitsch   PetscCall(DMLabelCreate(PETSC_COMM_SELF, "subpoint_map", &subpointMap));
35959566063dSJacob Faibussowitsch   PetscCall(DMPlexSetSubpointMap(subdm, subpointMap));
35969566063dSJacob Faibussowitsch   PetscCall(DMLabelDestroy(&subpointMap));
35979566063dSJacob Faibussowitsch   PetscCall(DMPlexMarkCohesiveSubmesh_Uninterpolated(dm, hasLagrange, label, value, subpointMap, &numSubFaces, &nFV, &subCells, subdm));
3598766ab985SMatthew G. Knepley   /* Setup chart */
35999566063dSJacob Faibussowitsch   PetscCall(DMLabelGetStratumSize(subpointMap, 0, &numSubVertices));
36009566063dSJacob Faibussowitsch   PetscCall(DMLabelGetStratumSize(subpointMap, 2, &numSubCells));
36019566063dSJacob Faibussowitsch   PetscCall(DMPlexSetChart(subdm, 0, numSubCells+numSubFaces+numSubVertices));
36029566063dSJacob Faibussowitsch   PetscCall(DMPlexSetVTKCellHeight(subdm, 1));
3603766ab985SMatthew G. Knepley   /* Set cone sizes */
3604766ab985SMatthew G. Knepley   firstSubVertex = numSubCells;
3605766ab985SMatthew G. Knepley   firstSubFace   = numSubCells+numSubVertices;
3606766ab985SMatthew G. Knepley   newFacePoint   = firstSubFace;
36079566063dSJacob Faibussowitsch   PetscCall(DMLabelGetStratumIS(subpointMap, 0, &subvertexIS));
36089566063dSJacob Faibussowitsch   if (subvertexIS) PetscCall(ISGetIndices(subvertexIS, &subVertices));
3609766ab985SMatthew G. Knepley   for (c = 0; c < numSubCells; ++c) {
36109566063dSJacob Faibussowitsch     PetscCall(DMPlexSetConeSize(subdm, c, 1));
3611766ab985SMatthew G. Knepley   }
3612766ab985SMatthew G. Knepley   for (f = firstSubFace; f < firstSubFace+numSubFaces; ++f) {
36139566063dSJacob Faibussowitsch     PetscCall(DMPlexSetConeSize(subdm, f, nFV));
3614766ab985SMatthew G. Knepley   }
36159566063dSJacob Faibussowitsch   PetscCall(DMSetUp(subdm));
3616766ab985SMatthew G. Knepley   /* Create face cones */
36179566063dSJacob Faibussowitsch   PetscCall(DMPlexGetMaxSizes(dm, &maxConeSize, NULL));
36189566063dSJacob Faibussowitsch   PetscCall(DMGetWorkArray(subdm, maxConeSize, MPIU_INT, (void**) &subface));
3619766ab985SMatthew G. Knepley   for (c = 0; c < numSubCells; ++c) {
3620766ab985SMatthew G. Knepley     const PetscInt  cell    = subCells[c];
3621766ab985SMatthew G. Knepley     const PetscInt  subcell = c;
362287feddfdSMatthew G. Knepley     const PetscInt *cone, *cells;
3623412e9a14SMatthew G. Knepley     PetscBool       isHybrid;
362487feddfdSMatthew G. Knepley     PetscInt        numCells, subVertex, p, v;
3625766ab985SMatthew G. Knepley 
36269566063dSJacob Faibussowitsch     PetscCall(DMPlexCellIsHybrid_Internal(dm, cell, &isHybrid));
3627412e9a14SMatthew G. Knepley     if (!isHybrid) continue;
36289566063dSJacob Faibussowitsch     PetscCall(DMPlexGetCone(dm, cell, &cone));
362987feddfdSMatthew G. Knepley     for (v = 0; v < nFV; ++v) {
36309566063dSJacob Faibussowitsch       PetscCall(PetscFindInt(cone[v], numSubVertices, subVertices, &subVertex));
363187feddfdSMatthew G. Knepley       subface[v] = firstSubVertex+subVertex;
363287feddfdSMatthew G. Knepley     }
36339566063dSJacob Faibussowitsch     PetscCall(DMPlexSetCone(subdm, newFacePoint, subface));
36349566063dSJacob Faibussowitsch     PetscCall(DMPlexSetCone(subdm, subcell, &newFacePoint));
36359566063dSJacob Faibussowitsch     PetscCall(DMPlexGetJoin(dm, nFV, cone, &numCells, &cells));
363627234c99SMatthew G. Knepley     /* Not true in parallel
363708401ef6SPierre Jolivet     PetscCheck(numCells == 2,PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Cohesive cells should separate two cells"); */
363887feddfdSMatthew G. Knepley     for (p = 0; p < numCells; ++p) {
363987feddfdSMatthew G. Knepley       PetscInt  negsubcell;
3640412e9a14SMatthew G. Knepley       PetscBool isHybrid;
3641766ab985SMatthew G. Knepley 
36429566063dSJacob Faibussowitsch       PetscCall(DMPlexCellIsHybrid_Internal(dm, cells[p], &isHybrid));
3643412e9a14SMatthew G. Knepley       if (isHybrid) continue;
364487feddfdSMatthew G. Knepley       /* I know this is a crap search */
364587feddfdSMatthew G. Knepley       for (negsubcell = 0; negsubcell < numSubCells; ++negsubcell) {
364687feddfdSMatthew G. Knepley         if (subCells[negsubcell] == cells[p]) break;
3647766ab985SMatthew G. Knepley       }
364863a3b9bcSJacob Faibussowitsch       PetscCheck(negsubcell != numSubCells,PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Could not find negative face neighbor for cohesive cell %" PetscInt_FMT, cell);
36499566063dSJacob Faibussowitsch       PetscCall(DMPlexSetCone(subdm, negsubcell, &newFacePoint));
3650766ab985SMatthew G. Knepley     }
36519566063dSJacob Faibussowitsch     PetscCall(DMPlexRestoreJoin(dm, nFV, cone, &numCells, &cells));
365287feddfdSMatthew G. Knepley     ++newFacePoint;
3653766ab985SMatthew G. Knepley   }
36549566063dSJacob Faibussowitsch   PetscCall(DMRestoreWorkArray(subdm, maxConeSize, MPIU_INT, (void**) &subface));
36559566063dSJacob Faibussowitsch   PetscCall(DMPlexSymmetrize(subdm));
36569566063dSJacob Faibussowitsch   PetscCall(DMPlexStratify(subdm));
3657766ab985SMatthew G. Knepley   /* Build coordinates */
3658766ab985SMatthew G. Knepley   {
3659766ab985SMatthew G. Knepley     PetscSection coordSection, subCoordSection;
3660766ab985SMatthew G. Knepley     Vec          coordinates, subCoordinates;
3661766ab985SMatthew G. Knepley     PetscScalar *coords, *subCoords;
3662c0e8cf5fSMatthew G. Knepley     PetscInt     cdim, numComp, coordSize, v;
366324640c55SToby Isaac     const char  *name;
3664766ab985SMatthew G. Knepley 
36659566063dSJacob Faibussowitsch     PetscCall(DMGetCoordinateDim(dm, &cdim));
36669566063dSJacob Faibussowitsch     PetscCall(DMGetCoordinateSection(dm, &coordSection));
36679566063dSJacob Faibussowitsch     PetscCall(DMGetCoordinatesLocal(dm, &coordinates));
36689566063dSJacob Faibussowitsch     PetscCall(DMGetCoordinateSection(subdm, &subCoordSection));
36699566063dSJacob Faibussowitsch     PetscCall(PetscSectionSetNumFields(subCoordSection, 1));
36709566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetFieldComponents(coordSection, 0, &numComp));
36719566063dSJacob Faibussowitsch     PetscCall(PetscSectionSetFieldComponents(subCoordSection, 0, numComp));
36729566063dSJacob Faibussowitsch     PetscCall(PetscSectionSetChart(subCoordSection, firstSubVertex, firstSubVertex+numSubVertices));
3673766ab985SMatthew G. Knepley     for (v = 0; v < numSubVertices; ++v) {
3674766ab985SMatthew G. Knepley       const PetscInt vertex    = subVertices[v];
3675766ab985SMatthew G. Knepley       const PetscInt subvertex = firstSubVertex+v;
3676766ab985SMatthew G. Knepley       PetscInt       dof;
3677766ab985SMatthew G. Knepley 
36789566063dSJacob Faibussowitsch       PetscCall(PetscSectionGetDof(coordSection, vertex, &dof));
36799566063dSJacob Faibussowitsch       PetscCall(PetscSectionSetDof(subCoordSection, subvertex, dof));
36809566063dSJacob Faibussowitsch       PetscCall(PetscSectionSetFieldDof(subCoordSection, subvertex, 0, dof));
3681766ab985SMatthew G. Knepley     }
36829566063dSJacob Faibussowitsch     PetscCall(PetscSectionSetUp(subCoordSection));
36839566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetStorageSize(subCoordSection, &coordSize));
36849566063dSJacob Faibussowitsch     PetscCall(VecCreate(PETSC_COMM_SELF, &subCoordinates));
36859566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetName((PetscObject)coordinates,&name));
36869566063dSJacob Faibussowitsch     PetscCall(PetscObjectSetName((PetscObject)subCoordinates,name));
36879566063dSJacob Faibussowitsch     PetscCall(VecSetSizes(subCoordinates, coordSize, PETSC_DETERMINE));
36889566063dSJacob Faibussowitsch     PetscCall(VecSetBlockSize(subCoordinates, cdim));
36899566063dSJacob Faibussowitsch     PetscCall(VecSetType(subCoordinates,VECSTANDARD));
36909566063dSJacob Faibussowitsch     PetscCall(VecGetArray(coordinates,    &coords));
36919566063dSJacob Faibussowitsch     PetscCall(VecGetArray(subCoordinates, &subCoords));
3692766ab985SMatthew G. Knepley     for (v = 0; v < numSubVertices; ++v) {
3693766ab985SMatthew G. Knepley       const PetscInt vertex    = subVertices[v];
3694766ab985SMatthew G. Knepley       const PetscInt subvertex = firstSubVertex+v;
3695766ab985SMatthew G. Knepley       PetscInt       dof, off, sdof, soff, d;
3696766ab985SMatthew G. Knepley 
36979566063dSJacob Faibussowitsch       PetscCall(PetscSectionGetDof(coordSection, vertex, &dof));
36989566063dSJacob Faibussowitsch       PetscCall(PetscSectionGetOffset(coordSection, vertex, &off));
36999566063dSJacob Faibussowitsch       PetscCall(PetscSectionGetDof(subCoordSection, subvertex, &sdof));
37009566063dSJacob Faibussowitsch       PetscCall(PetscSectionGetOffset(subCoordSection, subvertex, &soff));
370163a3b9bcSJacob Faibussowitsch       PetscCheck(dof == sdof,comm, PETSC_ERR_PLIB, "Coordinate dimension %" PetscInt_FMT " on subvertex %" PetscInt_FMT ", vertex %" PetscInt_FMT " should be %" PetscInt_FMT, sdof, subvertex, vertex, dof);
3702766ab985SMatthew G. Knepley       for (d = 0; d < dof; ++d) subCoords[soff+d] = coords[off+d];
3703766ab985SMatthew G. Knepley     }
37049566063dSJacob Faibussowitsch     PetscCall(VecRestoreArray(coordinates,    &coords));
37059566063dSJacob Faibussowitsch     PetscCall(VecRestoreArray(subCoordinates, &subCoords));
37069566063dSJacob Faibussowitsch     PetscCall(DMSetCoordinatesLocal(subdm, subCoordinates));
37079566063dSJacob Faibussowitsch     PetscCall(VecDestroy(&subCoordinates));
3708766ab985SMatthew G. Knepley   }
3709aca35d17SMatthew G. Knepley   /* Build SF */
3710aca35d17SMatthew G. Knepley   CHKMEMQ;
3711aca35d17SMatthew G. Knepley   {
3712aca35d17SMatthew G. Knepley     PetscSF            sfPoint, sfPointSub;
3713aca35d17SMatthew G. Knepley     const PetscSFNode *remotePoints;
3714bdcf2095SMatthew G. Knepley     PetscSFNode       *sremotePoints, *newLocalPoints, *newOwners;
3715aca35d17SMatthew G. Knepley     const PetscInt    *localPoints;
3716bdcf2095SMatthew G. Knepley     PetscInt          *slocalPoints;
371749c26ae4SMatthew G. Knepley     PetscInt           numRoots, numLeaves, numSubRoots = numSubCells+numSubFaces+numSubVertices, numSubLeaves = 0, l, sl, ll, pStart, pEnd, p, vStart, vEnd;
3718bdcf2095SMatthew G. Knepley     PetscMPIInt        rank;
3719aca35d17SMatthew G. Knepley 
37209566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject) dm), &rank));
37219566063dSJacob Faibussowitsch     PetscCall(DMGetPointSF(dm, &sfPoint));
37229566063dSJacob Faibussowitsch     PetscCall(DMGetPointSF(subdm, &sfPointSub));
37239566063dSJacob Faibussowitsch     PetscCall(DMPlexGetChart(dm, &pStart, &pEnd));
37249566063dSJacob Faibussowitsch     PetscCall(DMPlexGetDepthStratum(dm, 0, &vStart, &vEnd));
37259566063dSJacob Faibussowitsch     PetscCall(PetscSFGetGraph(sfPoint, &numRoots, &numLeaves, &localPoints, &remotePoints));
3726aca35d17SMatthew G. Knepley     if (numRoots >= 0) {
3727aca35d17SMatthew G. Knepley       /* Only vertices should be shared */
37289566063dSJacob Faibussowitsch       PetscCall(PetscMalloc2(pEnd-pStart,&newLocalPoints,numRoots,&newOwners));
3729bdcf2095SMatthew G. Knepley       for (p = 0; p < pEnd-pStart; ++p) {
3730bdcf2095SMatthew G. Knepley         newLocalPoints[p].rank  = -2;
3731bdcf2095SMatthew G. Knepley         newLocalPoints[p].index = -2;
3732bdcf2095SMatthew G. Knepley       }
37339e0823b2SMatthew G. Knepley       /* Set subleaves */
3734aca35d17SMatthew G. Knepley       for (l = 0; l < numLeaves; ++l) {
3735aca35d17SMatthew G. Knepley         const PetscInt point    = localPoints[l];
3736bdcf2095SMatthew G. Knepley         const PetscInt subPoint = DMPlexFilterPoint_Internal(point, firstSubVertex, numSubVertices, subVertices);
3737aca35d17SMatthew G. Knepley 
373863a3b9bcSJacob Faibussowitsch         PetscCheck(!(point < vStart) || !(point >= vEnd),PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Should not be mapping anything but vertices, %" PetscInt_FMT, point);
3739bdcf2095SMatthew G. Knepley         if (subPoint < 0) continue;
3740bdcf2095SMatthew G. Knepley         newLocalPoints[point-pStart].rank  = rank;
3741bdcf2095SMatthew G. Knepley         newLocalPoints[point-pStart].index = subPoint;
3742bdcf2095SMatthew G. Knepley         ++numSubLeaves;
3743aca35d17SMatthew G. Knepley       }
37449e0823b2SMatthew G. Knepley       /* Must put in owned subpoints */
37459e0823b2SMatthew G. Knepley       for (p = pStart; p < pEnd; ++p) {
37469e0823b2SMatthew G. Knepley         const PetscInt subPoint = DMPlexFilterPoint_Internal(p, firstSubVertex, numSubVertices, subVertices);
37479e0823b2SMatthew G. Knepley 
37489e0823b2SMatthew G. Knepley         if (subPoint < 0) {
37499e0823b2SMatthew G. Knepley           newOwners[p-pStart].rank  = -3;
37509e0823b2SMatthew G. Knepley           newOwners[p-pStart].index = -3;
37519e0823b2SMatthew G. Knepley         } else {
37529e0823b2SMatthew G. Knepley           newOwners[p-pStart].rank  = rank;
37539e0823b2SMatthew G. Knepley           newOwners[p-pStart].index = subPoint;
37549e0823b2SMatthew G. Knepley         }
3755bdcf2095SMatthew G. Knepley       }
37569566063dSJacob Faibussowitsch       PetscCall(PetscSFReduceBegin(sfPoint, MPIU_2INT, newLocalPoints, newOwners, MPI_MAXLOC));
37579566063dSJacob Faibussowitsch       PetscCall(PetscSFReduceEnd(sfPoint, MPIU_2INT, newLocalPoints, newOwners, MPI_MAXLOC));
37589566063dSJacob Faibussowitsch       PetscCall(PetscSFBcastBegin(sfPoint, MPIU_2INT, newOwners, newLocalPoints,MPI_REPLACE));
37599566063dSJacob Faibussowitsch       PetscCall(PetscSFBcastEnd(sfPoint, MPIU_2INT, newOwners, newLocalPoints,MPI_REPLACE));
37609566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(numSubLeaves,    &slocalPoints));
37619566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(numSubLeaves, &sremotePoints));
376249c26ae4SMatthew G. Knepley       for (l = 0, sl = 0, ll = 0; l < numLeaves; ++l) {
3763bdcf2095SMatthew G. Knepley         const PetscInt point    = localPoints[l];
3764bdcf2095SMatthew G. Knepley         const PetscInt subPoint = DMPlexFilterPoint_Internal(point, firstSubVertex, numSubVertices, subVertices);
3765aca35d17SMatthew G. Knepley 
3766aca35d17SMatthew G. Knepley         if (subPoint < 0) continue;
376749c26ae4SMatthew G. Knepley         if (newLocalPoints[point].rank == rank) {++ll; continue;}
3768aca35d17SMatthew G. Knepley         slocalPoints[sl]        = subPoint;
3769bdcf2095SMatthew G. Knepley         sremotePoints[sl].rank  = newLocalPoints[point].rank;
3770bdcf2095SMatthew G. Knepley         sremotePoints[sl].index = newLocalPoints[point].index;
377163a3b9bcSJacob Faibussowitsch         PetscCheck(sremotePoints[sl].rank  >= 0,PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid remote rank for local point %" PetscInt_FMT, point);
377263a3b9bcSJacob Faibussowitsch         PetscCheck(sremotePoints[sl].index >= 0,PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid remote subpoint for local point %" PetscInt_FMT, point);
3773aca35d17SMatthew G. Knepley         ++sl;
3774aca35d17SMatthew G. Knepley       }
37759566063dSJacob Faibussowitsch       PetscCall(PetscFree2(newLocalPoints,newOwners));
37761dca8a05SBarry Smith       PetscCheck(sl + ll == numSubLeaves,PETSC_COMM_SELF, PETSC_ERR_PLIB, "Mismatch in number of subleaves %" PetscInt_FMT " + %" PetscInt_FMT " != %" PetscInt_FMT, sl, ll, numSubLeaves);
37779566063dSJacob Faibussowitsch       PetscCall(PetscSFSetGraph(sfPointSub, numSubRoots, sl, slocalPoints, PETSC_OWN_POINTER, sremotePoints, PETSC_OWN_POINTER));
3778aca35d17SMatthew G. Knepley     }
3779aca35d17SMatthew G. Knepley   }
3780aca35d17SMatthew G. Knepley   CHKMEMQ;
3781766ab985SMatthew G. Knepley   /* Cleanup */
37829566063dSJacob Faibussowitsch   if (subvertexIS) PetscCall(ISRestoreIndices(subvertexIS, &subVertices));
37839566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&subvertexIS));
37849566063dSJacob Faibussowitsch   PetscCall(PetscFree(subCells));
3785766ab985SMatthew G. Knepley   PetscFunctionReturn(0);
3786766ab985SMatthew G. Knepley }
3787766ab985SMatthew G. Knepley 
37883982b651SMatthew G. Knepley static PetscErrorCode DMPlexCreateCohesiveSubmesh_Interpolated(DM dm, const char labelname[], PetscInt value, DM subdm)
3789766ab985SMatthew G. Knepley {
37903982b651SMatthew G. Knepley   DMLabel        label = NULL;
3791766ab985SMatthew G. Knepley 
3792766ab985SMatthew G. Knepley   PetscFunctionBegin;
37939566063dSJacob Faibussowitsch   if (labelname) PetscCall(DMGetLabel(dm, labelname, &label));
37949566063dSJacob Faibussowitsch   PetscCall(DMPlexCreateSubmeshGeneric_Interpolated(dm, label, value, PETSC_FALSE, PETSC_TRUE, 1, subdm));
3795766ab985SMatthew G. Knepley   PetscFunctionReturn(0);
3796766ab985SMatthew G. Knepley }
3797766ab985SMatthew G. Knepley 
3798c08575a3SMatthew G. Knepley /*@C
37997d2fefb6SMatthew G. Knepley   DMPlexCreateCohesiveSubmesh - Extract from a mesh with cohesive cells the hypersurface defined by one face of the cells. Optionally, a Label can be given to restrict the cells.
3800766ab985SMatthew G. Knepley 
3801766ab985SMatthew G. Knepley   Input Parameters:
3802766ab985SMatthew G. Knepley + dm          - The original mesh
380327c04023SMatthew G. Knepley . hasLagrange - The mesh has Lagrange unknowns in the cohesive cells
38047afc1a8bSJed Brown . label       - A label name, or NULL
380527c04023SMatthew G. Knepley - value  - A label value
3806766ab985SMatthew G. Knepley 
3807766ab985SMatthew G. Knepley   Output Parameter:
3808766ab985SMatthew G. Knepley . subdm - The surface mesh
3809766ab985SMatthew G. Knepley 
3810766ab985SMatthew G. Knepley   Note: This function produces a DMLabel mapping original points in the submesh to their depth. This can be obtained using DMPlexGetSubpointMap().
3811766ab985SMatthew G. Knepley 
3812766ab985SMatthew G. Knepley   Level: developer
3813766ab985SMatthew G. Knepley 
3814db781477SPatrick Sanan .seealso: `DMPlexGetSubpointMap()`, `DMPlexCreateSubmesh()`
3815c08575a3SMatthew G. Knepley @*/
381627c04023SMatthew G. Knepley PetscErrorCode DMPlexCreateCohesiveSubmesh(DM dm, PetscBool hasLagrange, const char label[], PetscInt value, DM *subdm)
3817766ab985SMatthew G. Knepley {
3818c0e8cf5fSMatthew G. Knepley   PetscInt       dim, cdim, depth;
3819766ab985SMatthew G. Knepley 
3820766ab985SMatthew G. Knepley   PetscFunctionBegin;
3821766ab985SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
382227c04023SMatthew G. Knepley   PetscValidPointer(subdm, 5);
38239566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dm, &dim));
38249566063dSJacob Faibussowitsch   PetscCall(DMPlexGetDepth(dm, &depth));
38259566063dSJacob Faibussowitsch   PetscCall(DMCreate(PetscObjectComm((PetscObject)dm), subdm));
38269566063dSJacob Faibussowitsch   PetscCall(DMSetType(*subdm, DMPLEX));
38279566063dSJacob Faibussowitsch   PetscCall(DMSetDimension(*subdm, dim-1));
38289566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateDim(dm, &cdim));
38299566063dSJacob Faibussowitsch   PetscCall(DMSetCoordinateDim(*subdm, cdim));
3830766ab985SMatthew G. Knepley   if (depth == dim) {
38319566063dSJacob Faibussowitsch     PetscCall(DMPlexCreateCohesiveSubmesh_Interpolated(dm, label, value, *subdm));
3832766ab985SMatthew G. Knepley   } else {
38339566063dSJacob Faibussowitsch     PetscCall(DMPlexCreateCohesiveSubmesh_Uninterpolated(dm, hasLagrange, label, value, *subdm));
3834e6ccafaeSMatthew G Knepley   }
38355de52c6dSVaclav Hapla   PetscCall(DMPlexCopy_Internal(dm, PETSC_TRUE, PETSC_TRUE, *subdm));
3836e6ccafaeSMatthew G Knepley   PetscFunctionReturn(0);
3837e6ccafaeSMatthew G Knepley }
3838e6ccafaeSMatthew G Knepley 
3839bec263e5SMatthew G. Knepley /*@
3840bec263e5SMatthew G. Knepley   DMPlexFilter - Extract a subset of mesh cells defined by a label as a separate mesh
3841bec263e5SMatthew G. Knepley 
3842bec263e5SMatthew G. Knepley   Input Parameters:
3843bec263e5SMatthew G. Knepley + dm        - The original mesh
3844bec263e5SMatthew G. Knepley . cellLabel - The DMLabel marking cells contained in the new mesh
3845bec263e5SMatthew G. Knepley - value     - The label value to use
3846bec263e5SMatthew G. Knepley 
3847bec263e5SMatthew G. Knepley   Output Parameter:
3848bec263e5SMatthew G. Knepley . subdm - The new mesh
3849bec263e5SMatthew G. Knepley 
3850bec263e5SMatthew G. Knepley   Note: This function produces a DMLabel mapping original points in the submesh to their depth. This can be obtained using DMPlexGetSubpointMap().
3851bec263e5SMatthew G. Knepley 
3852bec263e5SMatthew G. Knepley   Level: developer
3853bec263e5SMatthew G. Knepley 
3854db781477SPatrick Sanan .seealso: `DMPlexGetSubpointMap()`, `DMGetLabel()`, `DMLabelSetValue()`
3855bec263e5SMatthew G. Knepley @*/
3856bec263e5SMatthew G. Knepley PetscErrorCode DMPlexFilter(DM dm, DMLabel cellLabel, PetscInt value, DM *subdm)
3857bec263e5SMatthew G. Knepley {
3858bec263e5SMatthew G. Knepley   PetscInt       dim;
3859bec263e5SMatthew G. Knepley 
3860bec263e5SMatthew G. Knepley   PetscFunctionBegin;
3861bec263e5SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
3862064a246eSJacob Faibussowitsch   PetscValidPointer(subdm, 4);
38639566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dm, &dim));
38649566063dSJacob Faibussowitsch   PetscCall(DMCreate(PetscObjectComm((PetscObject) dm), subdm));
38659566063dSJacob Faibussowitsch   PetscCall(DMSetType(*subdm, DMPLEX));
38669566063dSJacob Faibussowitsch   PetscCall(DMSetDimension(*subdm, dim));
3867bec263e5SMatthew G. Knepley   /* Extract submesh in place, could be empty on some procs, could have inconsistency if procs do not both extract a shared cell */
38689566063dSJacob Faibussowitsch   PetscCall(DMPlexCreateSubmeshGeneric_Interpolated(dm, cellLabel, value, PETSC_FALSE, PETSC_FALSE, 0, *subdm));
38695de52c6dSVaclav Hapla   PetscCall(DMPlexCopy_Internal(dm, PETSC_TRUE, PETSC_TRUE, *subdm));
3870bec263e5SMatthew G. Knepley   PetscFunctionReturn(0);
3871bec263e5SMatthew G. Knepley }
3872bec263e5SMatthew G. Knepley 
387364beef6dSMatthew G. Knepley /*@
387464beef6dSMatthew G. Knepley   DMPlexGetSubpointMap - Returns a DMLabel with point dimension as values
387564beef6dSMatthew G. Knepley 
387664beef6dSMatthew G. Knepley   Input Parameter:
387764beef6dSMatthew G. Knepley . dm - The submesh DM
387864beef6dSMatthew G. Knepley 
387964beef6dSMatthew G. Knepley   Output Parameter:
388064beef6dSMatthew G. Knepley . subpointMap - The DMLabel of all the points from the original mesh in this submesh, or NULL if this is not a submesh
388164beef6dSMatthew G. Knepley 
388264beef6dSMatthew G. Knepley   Level: developer
388364beef6dSMatthew G. Knepley 
3884db781477SPatrick Sanan .seealso: `DMPlexCreateSubmesh()`, `DMPlexGetSubpointIS()`
388564beef6dSMatthew G. Knepley @*/
3886e6ccafaeSMatthew G Knepley PetscErrorCode DMPlexGetSubpointMap(DM dm, DMLabel *subpointMap)
3887e6ccafaeSMatthew G Knepley {
3888e6ccafaeSMatthew G Knepley   PetscFunctionBegin;
3889e6ccafaeSMatthew G Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
3890e6ccafaeSMatthew G Knepley   PetscValidPointer(subpointMap, 2);
389165663942SMatthew G. Knepley   *subpointMap = ((DM_Plex*) dm->data)->subpointMap;
3892e6ccafaeSMatthew G Knepley   PetscFunctionReturn(0);
3893e6ccafaeSMatthew G Knepley }
3894e6ccafaeSMatthew G Knepley 
3895c08575a3SMatthew G. Knepley /*@
3896c08575a3SMatthew G. Knepley   DMPlexSetSubpointMap - Sets the DMLabel with point dimension as values
3897c08575a3SMatthew G. Knepley 
3898c08575a3SMatthew G. Knepley   Input Parameters:
3899c08575a3SMatthew G. Knepley + dm - The submesh DM
3900c08575a3SMatthew G. Knepley - subpointMap - The DMLabel of all the points from the original mesh in this submesh
3901c08575a3SMatthew G. Knepley 
3902c08575a3SMatthew G. Knepley   Note: Should normally not be called by the user, since it is set in DMPlexCreateSubmesh()
3903c08575a3SMatthew G. Knepley 
3904c08575a3SMatthew G. Knepley   Level: developer
3905c08575a3SMatthew G. Knepley 
3906db781477SPatrick Sanan .seealso: `DMPlexCreateSubmesh()`, `DMPlexGetSubpointIS()`
3907c08575a3SMatthew G. Knepley @*/
3908e6ccafaeSMatthew G Knepley PetscErrorCode DMPlexSetSubpointMap(DM dm, DMLabel subpointMap)
3909e6ccafaeSMatthew G Knepley {
3910e6ccafaeSMatthew G Knepley   DM_Plex       *mesh = (DM_Plex *) dm->data;
3911285d324eSMatthew G. Knepley   DMLabel        tmp;
3912e6ccafaeSMatthew G Knepley 
3913e6ccafaeSMatthew G Knepley   PetscFunctionBegin;
3914e6ccafaeSMatthew G Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
3915285d324eSMatthew G. Knepley   tmp  = mesh->subpointMap;
3916e6ccafaeSMatthew G Knepley   mesh->subpointMap = subpointMap;
39179566063dSJacob Faibussowitsch   PetscCall(PetscObjectReference((PetscObject) mesh->subpointMap));
39189566063dSJacob Faibussowitsch   PetscCall(DMLabelDestroy(&tmp));
3919e6ccafaeSMatthew G Knepley   PetscFunctionReturn(0);
3920e6ccafaeSMatthew G Knepley }
3921e6ccafaeSMatthew G Knepley 
392297d8846cSMatthew Knepley static PetscErrorCode DMPlexCreateSubpointIS_Internal(DM dm, IS *subpointIS)
392397d8846cSMatthew Knepley {
392497d8846cSMatthew Knepley   DMLabel        spmap;
392597d8846cSMatthew Knepley   PetscInt       depth, d;
392697d8846cSMatthew Knepley 
392797d8846cSMatthew Knepley   PetscFunctionBegin;
39289566063dSJacob Faibussowitsch   PetscCall(DMPlexGetSubpointMap(dm, &spmap));
39299566063dSJacob Faibussowitsch   PetscCall(DMPlexGetDepth(dm, &depth));
393097d8846cSMatthew Knepley   if (spmap && depth >= 0) {
393197d8846cSMatthew Knepley     DM_Plex  *mesh = (DM_Plex *) dm->data;
393297d8846cSMatthew Knepley     PetscInt *points, *depths;
393397d8846cSMatthew Knepley     PetscInt  pStart, pEnd, p, off;
393497d8846cSMatthew Knepley 
39359566063dSJacob Faibussowitsch     PetscCall(DMPlexGetChart(dm, &pStart, &pEnd));
393663a3b9bcSJacob Faibussowitsch     PetscCheck(!pStart,PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Submeshes must start the point numbering at 0, not %" PetscInt_FMT, pStart);
39379566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(pEnd, &points));
39389566063dSJacob Faibussowitsch     PetscCall(DMGetWorkArray(dm, depth+1, MPIU_INT, &depths));
393997d8846cSMatthew Knepley     depths[0] = depth;
394097d8846cSMatthew Knepley     depths[1] = 0;
394197d8846cSMatthew Knepley     for (d = 2; d <= depth; ++d) {depths[d] = depth+1 - d;}
394297d8846cSMatthew Knepley     for (d = 0, off = 0; d <= depth; ++d) {
394397d8846cSMatthew Knepley       const PetscInt dep = depths[d];
394497d8846cSMatthew Knepley       PetscInt       depStart, depEnd, n;
394597d8846cSMatthew Knepley 
39469566063dSJacob Faibussowitsch       PetscCall(DMPlexGetDepthStratum(dm, dep, &depStart, &depEnd));
39479566063dSJacob Faibussowitsch       PetscCall(DMLabelGetStratumSize(spmap, dep, &n));
394897d8846cSMatthew Knepley       if (((d < 2) && (depth > 1)) || (d == 1)) { /* Only check vertices and cells for now since the map is broken for others */
394963a3b9bcSJacob Faibussowitsch         PetscCheck(n == depEnd-depStart,PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "The number of mapped submesh points %" PetscInt_FMT " at depth %" PetscInt_FMT " should be %" PetscInt_FMT, n, dep, depEnd-depStart);
395097d8846cSMatthew Knepley       } else {
395197d8846cSMatthew Knepley         if (!n) {
395297d8846cSMatthew Knepley           if (d == 0) {
395397d8846cSMatthew Knepley             /* Missing cells */
395497d8846cSMatthew Knepley             for (p = 0; p < depEnd-depStart; ++p, ++off) points[off] = -1;
395597d8846cSMatthew Knepley           } else {
395697d8846cSMatthew Knepley             /* Missing faces */
395797d8846cSMatthew Knepley             for (p = 0; p < depEnd-depStart; ++p, ++off) points[off] = PETSC_MAX_INT;
395897d8846cSMatthew Knepley           }
395997d8846cSMatthew Knepley         }
396097d8846cSMatthew Knepley       }
396197d8846cSMatthew Knepley       if (n) {
396297d8846cSMatthew Knepley         IS              is;
396397d8846cSMatthew Knepley         const PetscInt *opoints;
396497d8846cSMatthew Knepley 
39659566063dSJacob Faibussowitsch         PetscCall(DMLabelGetStratumIS(spmap, dep, &is));
39669566063dSJacob Faibussowitsch         PetscCall(ISGetIndices(is, &opoints));
396797d8846cSMatthew Knepley         for (p = 0; p < n; ++p, ++off) points[off] = opoints[p];
39689566063dSJacob Faibussowitsch         PetscCall(ISRestoreIndices(is, &opoints));
39699566063dSJacob Faibussowitsch         PetscCall(ISDestroy(&is));
397097d8846cSMatthew Knepley       }
397197d8846cSMatthew Knepley     }
39729566063dSJacob Faibussowitsch     PetscCall(DMRestoreWorkArray(dm, depth+1, MPIU_INT, &depths));
397363a3b9bcSJacob Faibussowitsch     PetscCheck(off == pEnd,PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "The number of mapped submesh points %" PetscInt_FMT " should be %" PetscInt_FMT, off, pEnd);
39749566063dSJacob Faibussowitsch     PetscCall(ISCreateGeneral(PETSC_COMM_SELF, pEnd, points, PETSC_OWN_POINTER, subpointIS));
39759566063dSJacob Faibussowitsch     PetscCall(PetscObjectStateGet((PetscObject) spmap, &mesh->subpointState));
397697d8846cSMatthew Knepley   }
397797d8846cSMatthew Knepley   PetscFunctionReturn(0);
397897d8846cSMatthew Knepley }
397997d8846cSMatthew Knepley 
398064beef6dSMatthew G. Knepley /*@
398197d8846cSMatthew Knepley   DMPlexGetSubpointIS - Returns an IS covering the entire subdm chart with the original points as data
3982e6ccafaeSMatthew G Knepley 
3983e6ccafaeSMatthew G Knepley   Input Parameter:
3984e6ccafaeSMatthew G Knepley . dm - The submesh DM
3985e6ccafaeSMatthew G Knepley 
3986e6ccafaeSMatthew G Knepley   Output Parameter:
39870298fd71SBarry Smith . subpointIS - The IS of all the points from the original mesh in this submesh, or NULL if this is not a submesh
3988e6ccafaeSMatthew G Knepley 
39893982b651SMatthew G. Knepley   Note: This IS is guaranteed to be sorted by the construction of the submesh
399064beef6dSMatthew G. Knepley 
399164beef6dSMatthew G. Knepley   Level: developer
399264beef6dSMatthew G. Knepley 
3993db781477SPatrick Sanan .seealso: `DMPlexCreateSubmesh()`, `DMPlexGetSubpointMap()`
399464beef6dSMatthew G. Knepley @*/
399597d8846cSMatthew Knepley PetscErrorCode DMPlexGetSubpointIS(DM dm, IS *subpointIS)
3996e6ccafaeSMatthew G Knepley {
399797d8846cSMatthew Knepley   DM_Plex         *mesh = (DM_Plex *) dm->data;
399897d8846cSMatthew Knepley   DMLabel          spmap;
399997d8846cSMatthew Knepley   PetscObjectState state;
4000e6ccafaeSMatthew G Knepley 
4001e6ccafaeSMatthew G Knepley   PetscFunctionBegin;
4002e6ccafaeSMatthew G Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
4003e6ccafaeSMatthew G Knepley   PetscValidPointer(subpointIS, 2);
40049566063dSJacob Faibussowitsch   PetscCall(DMPlexGetSubpointMap(dm, &spmap));
40059566063dSJacob Faibussowitsch   PetscCall(PetscObjectStateGet((PetscObject) spmap, &state));
40069566063dSJacob Faibussowitsch   if (state != mesh->subpointState || !mesh->subpointIS) PetscCall(DMPlexCreateSubpointIS_Internal(dm, &mesh->subpointIS));
400797d8846cSMatthew Knepley   *subpointIS = mesh->subpointIS;
4008e6ccafaeSMatthew G Knepley   PetscFunctionReturn(0);
4009e6ccafaeSMatthew G Knepley }
4010559a1558SMatthew G. Knepley 
4011559a1558SMatthew G. Knepley /*@
4012a6e0b375SMatthew G. Knepley   DMGetEnclosureRelation - Get the relationship between dmA and dmB
4013559a1558SMatthew G. Knepley 
4014559a1558SMatthew G. Knepley   Input Parameters:
4015a6e0b375SMatthew G. Knepley + dmA - The first DM
4016a6e0b375SMatthew G. Knepley - dmB - The second DM
4017559a1558SMatthew G. Knepley 
4018559a1558SMatthew G. Knepley   Output Parameter:
4019a6e0b375SMatthew G. Knepley . rel - The relation of dmA to dmB
4020559a1558SMatthew G. Knepley 
4021a6e0b375SMatthew G. Knepley   Level: intermediate
4022559a1558SMatthew G. Knepley 
4023db781477SPatrick Sanan .seealso: `DMGetEnclosurePoint()`
4024559a1558SMatthew G. Knepley @*/
4025a6e0b375SMatthew G. Knepley PetscErrorCode DMGetEnclosureRelation(DM dmA, DM dmB, DMEnclosureType *rel)
4026559a1558SMatthew G. Knepley {
4027a6e0b375SMatthew G. Knepley   DM             plexA, plexB, sdm;
4028559a1558SMatthew G. Knepley   DMLabel        spmap;
4029a6e0b375SMatthew G. Knepley   PetscInt       pStartA, pEndA, pStartB, pEndB, NpA, NpB;
4030559a1558SMatthew G. Knepley 
403144171101SMatthew G. Knepley   PetscFunctionBegin;
4032a6e0b375SMatthew G. Knepley   PetscValidPointer(rel, 3);
4033a6e0b375SMatthew G. Knepley   *rel = DM_ENC_NONE;
4034a6e0b375SMatthew G. Knepley   if (!dmA || !dmB) PetscFunctionReturn(0);
4035a6e0b375SMatthew G. Knepley   PetscValidHeaderSpecific(dmA, DM_CLASSID, 1);
4036064a246eSJacob Faibussowitsch   PetscValidHeaderSpecific(dmB, DM_CLASSID, 2);
4037a6e0b375SMatthew G. Knepley   if (dmA == dmB) {*rel = DM_ENC_EQUALITY; PetscFunctionReturn(0);}
40389566063dSJacob Faibussowitsch   PetscCall(DMConvert(dmA, DMPLEX, &plexA));
40399566063dSJacob Faibussowitsch   PetscCall(DMConvert(dmB, DMPLEX, &plexB));
40409566063dSJacob Faibussowitsch   PetscCall(DMPlexGetChart(plexA, &pStartA, &pEndA));
40419566063dSJacob Faibussowitsch   PetscCall(DMPlexGetChart(plexB, &pStartB, &pEndB));
4042a6e0b375SMatthew G. Knepley   /* Assumption 1: subDMs have smaller charts than the DMs that they originate from
4043a6e0b375SMatthew G. Knepley     - The degenerate case of a subdomain which includes all of the domain on some process can be treated as equality */
4044a6e0b375SMatthew G. Knepley   if ((pStartA == pStartB) && (pEndA == pEndB)) {
4045a6e0b375SMatthew G. Knepley     *rel = DM_ENC_EQUALITY;
4046a6e0b375SMatthew G. Knepley     goto end;
4047559a1558SMatthew G. Knepley   }
4048a6e0b375SMatthew G. Knepley   NpA = pEndA - pStartA;
4049a6e0b375SMatthew G. Knepley   NpB = pEndB - pStartB;
4050a6e0b375SMatthew G. Knepley   if (NpA == NpB) goto end;
4051a6e0b375SMatthew G. Knepley   sdm = NpA > NpB ? plexB : plexA; /* The other is the original, enclosing dm */
40529566063dSJacob Faibussowitsch   PetscCall(DMPlexGetSubpointMap(sdm, &spmap));
4053a6e0b375SMatthew G. Knepley   if (!spmap) goto end;
4054a6e0b375SMatthew G. Knepley   /* TODO Check the space mapped to by subpointMap is same size as dm */
4055a6e0b375SMatthew G. Knepley   if (NpA > NpB) {
4056a6e0b375SMatthew G. Knepley     *rel = DM_ENC_SUPERMESH;
4057a6e0b375SMatthew G. Knepley   } else {
4058a6e0b375SMatthew G. Knepley     *rel = DM_ENC_SUBMESH;
4059a6e0b375SMatthew G. Knepley   }
4060a6e0b375SMatthew G. Knepley   end:
40619566063dSJacob Faibussowitsch   PetscCall(DMDestroy(&plexA));
40629566063dSJacob Faibussowitsch   PetscCall(DMDestroy(&plexB));
4063559a1558SMatthew G. Knepley   PetscFunctionReturn(0);
4064559a1558SMatthew G. Knepley }
406544171101SMatthew G. Knepley 
406644171101SMatthew G. Knepley /*@
4067a6e0b375SMatthew G. Knepley   DMGetEnclosurePoint - Get the point pA in dmA which corresponds to the point pB in dmB
406844171101SMatthew G. Knepley 
406944171101SMatthew G. Knepley   Input Parameters:
4070a6e0b375SMatthew G. Knepley + dmA   - The first DM
4071a6e0b375SMatthew G. Knepley . dmB   - The second DM
4072a6e0b375SMatthew G. Knepley . etype - The type of enclosure relation that dmA has to dmB
4073a6e0b375SMatthew G. Knepley - pB    - A point of dmB
407444171101SMatthew G. Knepley 
407544171101SMatthew G. Knepley   Output Parameter:
4076a6e0b375SMatthew G. Knepley . pA    - The corresponding point of dmA
407744171101SMatthew G. Knepley 
4078a6e0b375SMatthew G. Knepley   Level: intermediate
407944171101SMatthew G. Knepley 
4080db781477SPatrick Sanan .seealso: `DMGetEnclosureRelation()`
408144171101SMatthew G. Knepley @*/
4082a6e0b375SMatthew G. Knepley PetscErrorCode DMGetEnclosurePoint(DM dmA, DM dmB, DMEnclosureType etype, PetscInt pB, PetscInt *pA)
408344171101SMatthew G. Knepley {
4084a6e0b375SMatthew G. Knepley   DM              sdm;
4085a6e0b375SMatthew G. Knepley   IS              subpointIS;
4086a6e0b375SMatthew G. Knepley   const PetscInt *subpoints;
4087a6e0b375SMatthew G. Knepley   PetscInt        numSubpoints;
408844171101SMatthew G. Knepley 
408944171101SMatthew G. Knepley   PetscFunctionBegin;
4090a6e0b375SMatthew G. Knepley   /* TODO Cache the IS, making it look like an index */
4091a6e0b375SMatthew G. Knepley   switch (etype) {
4092a6e0b375SMatthew G. Knepley     case DM_ENC_SUPERMESH:
4093a6e0b375SMatthew G. Knepley     sdm  = dmB;
40949566063dSJacob Faibussowitsch     PetscCall(DMPlexGetSubpointIS(sdm, &subpointIS));
40959566063dSJacob Faibussowitsch     PetscCall(ISGetIndices(subpointIS, &subpoints));
4096a6e0b375SMatthew G. Knepley     *pA  = subpoints[pB];
40979566063dSJacob Faibussowitsch     PetscCall(ISRestoreIndices(subpointIS, &subpoints));
4098a6e0b375SMatthew G. Knepley     break;
4099a6e0b375SMatthew G. Knepley     case DM_ENC_SUBMESH:
4100a6e0b375SMatthew G. Knepley     sdm  = dmA;
41019566063dSJacob Faibussowitsch     PetscCall(DMPlexGetSubpointIS(sdm, &subpointIS));
41029566063dSJacob Faibussowitsch     PetscCall(ISGetLocalSize(subpointIS, &numSubpoints));
41039566063dSJacob Faibussowitsch     PetscCall(ISGetIndices(subpointIS, &subpoints));
41049566063dSJacob Faibussowitsch     PetscCall(PetscFindInt(pB, numSubpoints, subpoints, pA));
4105a6e0b375SMatthew G. Knepley     if (*pA < 0) {
41069566063dSJacob Faibussowitsch       PetscCall(DMViewFromOptions(dmA, NULL, "-dm_enc_A_view"));
41079566063dSJacob Faibussowitsch       PetscCall(DMViewFromOptions(dmB, NULL, "-dm_enc_B_view"));
410863a3b9bcSJacob Faibussowitsch       SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Point %" PetscInt_FMT " not found in submesh", pB);
4109a6e0b375SMatthew G. Knepley     }
41109566063dSJacob Faibussowitsch     PetscCall(ISRestoreIndices(subpointIS, &subpoints));
4111a6e0b375SMatthew G. Knepley     break;
4112a6e0b375SMatthew G. Knepley     case DM_ENC_EQUALITY:
4113a6e0b375SMatthew G. Knepley     case DM_ENC_NONE:
4114a6e0b375SMatthew G. Knepley     *pA = pB;break;
4115a6e0b375SMatthew G. Knepley     case DM_ENC_UNKNOWN:
4116a6e0b375SMatthew G. Knepley     {
4117a6e0b375SMatthew G. Knepley       DMEnclosureType enc;
411844171101SMatthew G. Knepley 
41199566063dSJacob Faibussowitsch       PetscCall(DMGetEnclosureRelation(dmA, dmB, &enc));
41209566063dSJacob Faibussowitsch       PetscCall(DMGetEnclosurePoint(dmA, dmB, enc, pB, pA));
4121a6e0b375SMatthew G. Knepley     }
4122a6e0b375SMatthew G. Knepley     break;
412398921bdaSJacob Faibussowitsch     default: SETERRQ(PetscObjectComm((PetscObject) dmA), PETSC_ERR_ARG_OUTOFRANGE, "Invalid enclosure type %d", (int) etype);
412444171101SMatthew G. Knepley   }
412544171101SMatthew G. Knepley   PetscFunctionReturn(0);
412644171101SMatthew G. Knepley }
4127