1af0996ceSBarry Smith #include <petsc/private/dmpleximpl.h> /*I "petscdmplex.h" I*/ 2c58f1c22SToby Isaac #include <petsc/private/dmlabelimpl.h> /*I "petscdmlabel.h" I*/ 30c312b8eSJed Brown #include <petscsf.h> 4e6ccafaeSMatthew G Knepley 5e752be1aSMatthew G. Knepley static PetscErrorCode DMPlexMarkBoundaryFaces_Internal(DM dm, PetscInt val, PetscInt cellHeight, DMLabel label) 630560a7bSMatthew G. Knepley { 730560a7bSMatthew G. Knepley PetscInt fStart, fEnd, f; 830560a7bSMatthew G. Knepley PetscErrorCode ierr; 930560a7bSMatthew G. Knepley 1030560a7bSMatthew G. Knepley PetscFunctionBegin; 1130560a7bSMatthew G. Knepley ierr = DMPlexGetHeightStratum(dm, cellHeight+1, &fStart, &fEnd);CHKERRQ(ierr); 1230560a7bSMatthew G. Knepley for (f = fStart; f < fEnd; ++f) { 1330560a7bSMatthew G. Knepley PetscInt supportSize; 1430560a7bSMatthew G. Knepley 1530560a7bSMatthew G. Knepley ierr = DMPlexGetSupportSize(dm, f, &supportSize);CHKERRQ(ierr); 16e752be1aSMatthew G. Knepley if (supportSize == 1) { 17e752be1aSMatthew G. Knepley if (val < 0) { 18e752be1aSMatthew G. Knepley PetscInt *closure = NULL; 19e752be1aSMatthew G. Knepley PetscInt clSize, cl, cval; 20e752be1aSMatthew G. Knepley 21e752be1aSMatthew G. Knepley ierr = DMPlexGetTransitiveClosure(dm, f, PETSC_TRUE, &clSize, &closure);CHKERRQ(ierr); 22e752be1aSMatthew G. Knepley for (cl = 0; cl < clSize*2; cl += 2) { 23e752be1aSMatthew G. Knepley ierr = DMLabelGetValue(label, closure[cl], &cval);CHKERRQ(ierr); 24e752be1aSMatthew G. Knepley if (cval < 0) continue; 25e752be1aSMatthew G. Knepley ierr = DMLabelSetValue(label, f, cval);CHKERRQ(ierr); 26e752be1aSMatthew G. Knepley break; 27e752be1aSMatthew G. Knepley } 28e752be1aSMatthew G. Knepley if (cl == clSize*2) {ierr = DMLabelSetValue(label, f, 1);CHKERRQ(ierr);} 29e752be1aSMatthew G. Knepley ierr = DMPlexRestoreTransitiveClosure(dm, f, PETSC_TRUE, &clSize, &closure);CHKERRQ(ierr); 30e752be1aSMatthew G. Knepley } else { 31e752be1aSMatthew G. Knepley ierr = DMLabelSetValue(label, f, val);CHKERRQ(ierr); 32e752be1aSMatthew G. Knepley } 33e752be1aSMatthew G. Knepley } 3430560a7bSMatthew G. Knepley } 3530560a7bSMatthew G. Knepley PetscFunctionReturn(0); 3630560a7bSMatthew G. Knepley } 3730560a7bSMatthew G. Knepley 38cd0c2139SMatthew G Knepley /*@ 39cd0c2139SMatthew G Knepley DMPlexMarkBoundaryFaces - Mark all faces on the boundary 40cd0c2139SMatthew G Knepley 41cd0c2139SMatthew G Knepley Not Collective 42cd0c2139SMatthew G Knepley 43cd0c2139SMatthew G Knepley Input Parameter: 44e752be1aSMatthew G. Knepley + dm - The original DM 45e752be1aSMatthew G. Knepley - val - The marker value, or PETSC_DETERMINE to use some value in the closure (or 1 if none are found) 46cd0c2139SMatthew G Knepley 47cd0c2139SMatthew G Knepley Output Parameter: 48e752be1aSMatthew G. Knepley . label - The DMLabel marking boundary faces with the given value 49cd0c2139SMatthew G Knepley 50cd0c2139SMatthew G Knepley Level: developer 51cd0c2139SMatthew G Knepley 52c58f1c22SToby Isaac .seealso: DMLabelCreate(), DMCreateLabel() 5309f723d9SJed Brown @*/ 54e752be1aSMatthew G. Knepley PetscErrorCode DMPlexMarkBoundaryFaces(DM dm, PetscInt val, DMLabel label) 55cd0c2139SMatthew G Knepley { 56827c4036SVaclav Hapla DMPlexInterpolatedFlag flg; 57cd0c2139SMatthew G Knepley PetscErrorCode ierr; 58cd0c2139SMatthew G Knepley 59cd0c2139SMatthew G Knepley PetscFunctionBegin; 60827c4036SVaclav Hapla PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 61827c4036SVaclav Hapla ierr = DMPlexIsInterpolated(dm, &flg);CHKERRQ(ierr); 62827c4036SVaclav Hapla if (flg != DMPLEX_INTERPOLATED_FULL) SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "DM is not fully interpolated on this rank"); 63e752be1aSMatthew G. Knepley ierr = DMPlexMarkBoundaryFaces_Internal(dm, val, 0, label);CHKERRQ(ierr); 64cd0c2139SMatthew G Knepley PetscFunctionReturn(0); 65cd0c2139SMatthew G Knepley } 66cd0c2139SMatthew G Knepley 67c08575a3SMatthew G. Knepley static PetscErrorCode DMPlexLabelComplete_Internal(DM dm, DMLabel label, PetscBool completeCells) 68b0bf5782SToby Isaac { 69b0bf5782SToby Isaac IS valueIS; 70ac51f24eSSander Arens PetscSF sfPoint; 71b0bf5782SToby Isaac const PetscInt *values; 72ac51f24eSSander Arens PetscInt numValues, v, cStart, cEnd, nroots; 73b0bf5782SToby Isaac PetscErrorCode ierr; 74b0bf5782SToby Isaac 75b0bf5782SToby Isaac PetscFunctionBegin; 76b0bf5782SToby Isaac ierr = DMLabelGetNumValues(label, &numValues);CHKERRQ(ierr); 77b0bf5782SToby Isaac ierr = DMLabelGetValueIS(label, &valueIS);CHKERRQ(ierr); 78b0bf5782SToby Isaac ierr = DMPlexGetHeightStratum(dm,0,&cStart,&cEnd);CHKERRQ(ierr); 79b0bf5782SToby Isaac ierr = ISGetIndices(valueIS, &values);CHKERRQ(ierr); 80b0bf5782SToby Isaac for (v = 0; v < numValues; ++v) { 81b0bf5782SToby Isaac IS pointIS; 82b0bf5782SToby Isaac const PetscInt *points; 83b0bf5782SToby Isaac PetscInt numPoints, p; 84b0bf5782SToby Isaac 85b0bf5782SToby Isaac ierr = DMLabelGetStratumSize(label, values[v], &numPoints);CHKERRQ(ierr); 86b0bf5782SToby Isaac ierr = DMLabelGetStratumIS(label, values[v], &pointIS);CHKERRQ(ierr); 87b0bf5782SToby Isaac ierr = ISGetIndices(pointIS, &points);CHKERRQ(ierr); 88b0bf5782SToby Isaac for (p = 0; p < numPoints; ++p) { 89b0bf5782SToby Isaac PetscInt q = points[p]; 90b0bf5782SToby Isaac PetscInt *closure = NULL; 91b0bf5782SToby Isaac PetscInt closureSize, c; 92b0bf5782SToby Isaac 93b0bf5782SToby Isaac if (cStart <= q && q < cEnd && !completeCells) { /* skip cells */ 94b0bf5782SToby Isaac continue; 95b0bf5782SToby Isaac } 96b0bf5782SToby Isaac ierr = DMPlexGetTransitiveClosure(dm, q, PETSC_TRUE, &closureSize, &closure);CHKERRQ(ierr); 97b0bf5782SToby Isaac for (c = 0; c < closureSize*2; c += 2) { 98b0bf5782SToby Isaac ierr = DMLabelSetValue(label, closure[c], values[v]);CHKERRQ(ierr); 99b0bf5782SToby Isaac } 100b0bf5782SToby Isaac ierr = DMPlexRestoreTransitiveClosure(dm, q, PETSC_TRUE, &closureSize, &closure);CHKERRQ(ierr); 101b0bf5782SToby Isaac } 102b0bf5782SToby Isaac ierr = ISRestoreIndices(pointIS, &points);CHKERRQ(ierr); 103b0bf5782SToby Isaac ierr = ISDestroy(&pointIS);CHKERRQ(ierr); 104b0bf5782SToby Isaac } 105b0bf5782SToby Isaac ierr = ISRestoreIndices(valueIS, &values);CHKERRQ(ierr); 106b0bf5782SToby Isaac ierr = ISDestroy(&valueIS);CHKERRQ(ierr); 107ac51f24eSSander Arens ierr = DMGetPointSF(dm, &sfPoint);CHKERRQ(ierr); 108ac51f24eSSander Arens ierr = PetscSFGetGraph(sfPoint, &nroots, NULL, NULL, NULL);CHKERRQ(ierr); 109ac51f24eSSander Arens if (nroots >= 0) { 11026279d81SSanderA DMLabel lblRoots, lblLeaves; 11126279d81SSanderA IS valueIS, pointIS; 11226279d81SSanderA const PetscInt *values; 11326279d81SSanderA PetscInt numValues, v; 11426279d81SSanderA PetscErrorCode ierr; 11526279d81SSanderA 11626279d81SSanderA ierr = DMGetPointSF(dm, &sfPoint);CHKERRQ(ierr); 11726279d81SSanderA /* Pull point contributions from remote leaves into local roots */ 11826279d81SSanderA ierr = DMLabelGather(label, sfPoint, &lblLeaves);CHKERRQ(ierr); 11926279d81SSanderA ierr = DMLabelGetValueIS(lblLeaves, &valueIS);CHKERRQ(ierr); 12026279d81SSanderA ierr = ISGetLocalSize(valueIS, &numValues);CHKERRQ(ierr); 12126279d81SSanderA ierr = ISGetIndices(valueIS, &values);CHKERRQ(ierr); 12226279d81SSanderA for (v = 0; v < numValues; ++v) { 12326279d81SSanderA const PetscInt value = values[v]; 12426279d81SSanderA 12526279d81SSanderA ierr = DMLabelGetStratumIS(lblLeaves, value, &pointIS);CHKERRQ(ierr); 12626279d81SSanderA ierr = DMLabelInsertIS(label, pointIS, value);CHKERRQ(ierr); 12726279d81SSanderA ierr = ISDestroy(&pointIS);CHKERRQ(ierr); 12826279d81SSanderA } 12926279d81SSanderA ierr = ISRestoreIndices(valueIS, &values);CHKERRQ(ierr); 13026279d81SSanderA ierr = ISDestroy(&valueIS);CHKERRQ(ierr); 13126279d81SSanderA ierr = DMLabelDestroy(&lblLeaves);CHKERRQ(ierr); 13226279d81SSanderA /* Push point contributions from roots into remote leaves */ 13326279d81SSanderA ierr = DMLabelDistribute(label, sfPoint, &lblRoots);CHKERRQ(ierr); 13426279d81SSanderA ierr = DMLabelGetValueIS(lblRoots, &valueIS);CHKERRQ(ierr); 13526279d81SSanderA ierr = ISGetLocalSize(valueIS, &numValues);CHKERRQ(ierr); 13626279d81SSanderA ierr = ISGetIndices(valueIS, &values);CHKERRQ(ierr); 13726279d81SSanderA for (v = 0; v < numValues; ++v) { 13826279d81SSanderA const PetscInt value = values[v]; 13926279d81SSanderA 14026279d81SSanderA ierr = DMLabelGetStratumIS(lblRoots, value, &pointIS);CHKERRQ(ierr); 14126279d81SSanderA ierr = DMLabelInsertIS(label, pointIS, value);CHKERRQ(ierr); 14226279d81SSanderA ierr = ISDestroy(&pointIS);CHKERRQ(ierr); 14326279d81SSanderA } 14426279d81SSanderA ierr = ISRestoreIndices(valueIS, &values);CHKERRQ(ierr); 14526279d81SSanderA ierr = ISDestroy(&valueIS);CHKERRQ(ierr); 14626279d81SSanderA ierr = DMLabelDestroy(&lblRoots);CHKERRQ(ierr); 14726279d81SSanderA } 148b0bf5782SToby Isaac PetscFunctionReturn(0); 149b0bf5782SToby Isaac } 150b0bf5782SToby Isaac 1512be2b188SMatthew G Knepley /*@ 1522be2b188SMatthew G Knepley DMPlexLabelComplete - Starting with a label marking points on a surface, we add the transitive closure to the surface 1532be2b188SMatthew G Knepley 1542be2b188SMatthew G Knepley Input Parameters: 1552be2b188SMatthew G Knepley + dm - The DM 1562be2b188SMatthew G Knepley - label - A DMLabel marking the surface points 1572be2b188SMatthew G Knepley 1582be2b188SMatthew G Knepley Output Parameter: 1592be2b188SMatthew G Knepley . label - A DMLabel marking all surface points in the transitive closure 1602be2b188SMatthew G Knepley 1612be2b188SMatthew G Knepley Level: developer 1622be2b188SMatthew G Knepley 1632be2b188SMatthew G Knepley .seealso: DMPlexLabelCohesiveComplete() 1642be2b188SMatthew G Knepley @*/ 1652be2b188SMatthew G Knepley PetscErrorCode DMPlexLabelComplete(DM dm, DMLabel label) 1662be2b188SMatthew G Knepley { 1672be2b188SMatthew G Knepley PetscErrorCode ierr; 1682be2b188SMatthew G Knepley 1692be2b188SMatthew G Knepley PetscFunctionBegin; 170b0bf5782SToby Isaac ierr = DMPlexLabelComplete_Internal(dm, label, PETSC_TRUE);CHKERRQ(ierr); 1712be2b188SMatthew G Knepley PetscFunctionReturn(0); 1722be2b188SMatthew G Knepley } 1732be2b188SMatthew G Knepley 1746cf0e42fSMatthew G. Knepley /*@ 175*a6e0b375SMatthew G. Knepley DMPlexLabelAddCells - Starting with a label marking points on a surface, we add a cell for each point 1766cf0e42fSMatthew G. Knepley 1776cf0e42fSMatthew G. Knepley Input Parameters: 1786cf0e42fSMatthew G. Knepley + dm - The DM 1796cf0e42fSMatthew G. Knepley - label - A DMLabel marking the surface points 1806cf0e42fSMatthew G. Knepley 1816cf0e42fSMatthew G. Knepley Output Parameter: 1826cf0e42fSMatthew G. Knepley . label - A DMLabel incorporating cells 1836cf0e42fSMatthew G. Knepley 1846cf0e42fSMatthew G. Knepley Level: developer 1856cf0e42fSMatthew G. Knepley 1866cf0e42fSMatthew G. Knepley Note: The cells allow FEM boundary conditions to be applied using the cell geometry 1876cf0e42fSMatthew G. Knepley 188*a6e0b375SMatthew G. Knepley .seealso: DMPlexLabelAddFaceCells(), DMPlexLabelComplete(), DMPlexLabelCohesiveComplete() 1896cf0e42fSMatthew G. Knepley @*/ 1906cf0e42fSMatthew G. Knepley PetscErrorCode DMPlexLabelAddCells(DM dm, DMLabel label) 1916cf0e42fSMatthew G. Knepley { 1926cf0e42fSMatthew G. Knepley IS valueIS; 1936cf0e42fSMatthew G. Knepley const PetscInt *values; 194485ad865SMatthew G. Knepley PetscInt numValues, v, cStart, cEnd; 1956cf0e42fSMatthew G. Knepley PetscErrorCode ierr; 1966cf0e42fSMatthew G. Knepley 1976cf0e42fSMatthew G. Knepley PetscFunctionBegin; 198485ad865SMatthew G. Knepley ierr = DMPlexGetInteriorCellStratum(dm, &cStart, &cEnd);CHKERRQ(ierr); 1996cf0e42fSMatthew G. Knepley ierr = DMLabelGetNumValues(label, &numValues);CHKERRQ(ierr); 2006cf0e42fSMatthew G. Knepley ierr = DMLabelGetValueIS(label, &valueIS);CHKERRQ(ierr); 2016cf0e42fSMatthew G. Knepley ierr = ISGetIndices(valueIS, &values);CHKERRQ(ierr); 2026cf0e42fSMatthew G. Knepley for (v = 0; v < numValues; ++v) { 2036cf0e42fSMatthew G. Knepley IS pointIS; 2046cf0e42fSMatthew G. Knepley const PetscInt *points; 2056cf0e42fSMatthew G. Knepley PetscInt numPoints, p; 2066cf0e42fSMatthew G. Knepley 2076cf0e42fSMatthew G. Knepley ierr = DMLabelGetStratumSize(label, values[v], &numPoints);CHKERRQ(ierr); 2086cf0e42fSMatthew G. Knepley ierr = DMLabelGetStratumIS(label, values[v], &pointIS);CHKERRQ(ierr); 2096cf0e42fSMatthew G. Knepley ierr = ISGetIndices(pointIS, &points);CHKERRQ(ierr); 2106cf0e42fSMatthew G. Knepley for (p = 0; p < numPoints; ++p) { 2116cf0e42fSMatthew G. Knepley PetscInt *closure = NULL; 212*a6e0b375SMatthew G. Knepley PetscInt closureSize, cl; 2136cf0e42fSMatthew G. Knepley 2146cf0e42fSMatthew G. Knepley ierr = DMPlexGetTransitiveClosure(dm, points[p], PETSC_FALSE, &closureSize, &closure);CHKERRQ(ierr); 21522eabd52SMatthew G. Knepley for (cl = closureSize-1; cl > 0; --cl) { 216*a6e0b375SMatthew G. Knepley const PetscInt cell = closure[cl*2]; 217*a6e0b375SMatthew G. Knepley if ((cell >= cStart) && (cell < cEnd)) {ierr = DMLabelSetValue(label, cell, values[v]);CHKERRQ(ierr); break;} 21822eabd52SMatthew G. Knepley } 2196cf0e42fSMatthew G. Knepley ierr = DMPlexRestoreTransitiveClosure(dm, points[p], PETSC_FALSE, &closureSize, &closure);CHKERRQ(ierr); 2206cf0e42fSMatthew G. Knepley } 2216cf0e42fSMatthew G. Knepley ierr = ISRestoreIndices(pointIS, &points);CHKERRQ(ierr); 2226cf0e42fSMatthew G. Knepley ierr = ISDestroy(&pointIS);CHKERRQ(ierr); 2236cf0e42fSMatthew G. Knepley } 2246cf0e42fSMatthew G. Knepley ierr = ISRestoreIndices(valueIS, &values);CHKERRQ(ierr); 2256cf0e42fSMatthew G. Knepley ierr = ISDestroy(&valueIS);CHKERRQ(ierr); 2266cf0e42fSMatthew G. Knepley PetscFunctionReturn(0); 2276cf0e42fSMatthew G. Knepley } 2286cf0e42fSMatthew G. Knepley 229f402d5e4SToby Isaac /*@ 230*a6e0b375SMatthew G. Knepley DMPlexLabelAddFaceCells - Starting with a label marking faces on a surface, we add a cell for each face 231*a6e0b375SMatthew G. Knepley 232*a6e0b375SMatthew G. Knepley Input Parameters: 233*a6e0b375SMatthew G. Knepley + dm - The DM 234*a6e0b375SMatthew G. Knepley - label - A DMLabel marking the surface points 235*a6e0b375SMatthew G. Knepley 236*a6e0b375SMatthew G. Knepley Output Parameter: 237*a6e0b375SMatthew G. Knepley . label - A DMLabel incorporating cells 238*a6e0b375SMatthew G. Knepley 239*a6e0b375SMatthew G. Knepley Level: developer 240*a6e0b375SMatthew G. Knepley 241*a6e0b375SMatthew G. Knepley Note: The cells allow FEM boundary conditions to be applied using the cell geometry 242*a6e0b375SMatthew G. Knepley 243*a6e0b375SMatthew G. Knepley .seealso: DMPlexLabelAddCells(), DMPlexLabelComplete(), DMPlexLabelCohesiveComplete() 244*a6e0b375SMatthew G. Knepley @*/ 245*a6e0b375SMatthew G. Knepley PetscErrorCode DMPlexLabelAddFaceCells(DM dm, DMLabel label) 246*a6e0b375SMatthew G. Knepley { 247*a6e0b375SMatthew G. Knepley IS valueIS; 248*a6e0b375SMatthew G. Knepley const PetscInt *values; 249*a6e0b375SMatthew G. Knepley PetscInt numValues, v, cStart, cEnd, fStart, fEnd; 250*a6e0b375SMatthew G. Knepley PetscErrorCode ierr; 251*a6e0b375SMatthew G. Knepley 252*a6e0b375SMatthew G. Knepley PetscFunctionBegin; 253*a6e0b375SMatthew G. Knepley ierr = DMPlexGetInteriorCellStratum(dm, &cStart, &cEnd);CHKERRQ(ierr); 254*a6e0b375SMatthew G. Knepley ierr = DMPlexGetHeightStratum(dm, 1, &fStart, &fEnd);CHKERRQ(ierr); 255*a6e0b375SMatthew G. Knepley ierr = DMLabelGetNumValues(label, &numValues);CHKERRQ(ierr); 256*a6e0b375SMatthew G. Knepley ierr = DMLabelGetValueIS(label, &valueIS);CHKERRQ(ierr); 257*a6e0b375SMatthew G. Knepley ierr = ISGetIndices(valueIS, &values);CHKERRQ(ierr); 258*a6e0b375SMatthew G. Knepley for (v = 0; v < numValues; ++v) { 259*a6e0b375SMatthew G. Knepley IS pointIS; 260*a6e0b375SMatthew G. Knepley const PetscInt *points; 261*a6e0b375SMatthew G. Knepley PetscInt numPoints, p; 262*a6e0b375SMatthew G. Knepley 263*a6e0b375SMatthew G. Knepley ierr = DMLabelGetStratumSize(label, values[v], &numPoints);CHKERRQ(ierr); 264*a6e0b375SMatthew G. Knepley ierr = DMLabelGetStratumIS(label, values[v], &pointIS);CHKERRQ(ierr); 265*a6e0b375SMatthew G. Knepley ierr = ISGetIndices(pointIS, &points);CHKERRQ(ierr); 266*a6e0b375SMatthew G. Knepley for (p = 0; p < numPoints; ++p) { 267*a6e0b375SMatthew G. Knepley const PetscInt face = points[p]; 268*a6e0b375SMatthew G. Knepley PetscInt *closure = NULL; 269*a6e0b375SMatthew G. Knepley PetscInt closureSize, cl; 270*a6e0b375SMatthew G. Knepley 271*a6e0b375SMatthew G. Knepley if ((face < fStart) || (face >= fEnd)) continue; 272*a6e0b375SMatthew G. Knepley ierr = DMPlexGetTransitiveClosure(dm, face, PETSC_FALSE, &closureSize, &closure);CHKERRQ(ierr); 273*a6e0b375SMatthew G. Knepley for (cl = closureSize-1; cl > 0; --cl) { 274*a6e0b375SMatthew G. Knepley const PetscInt cell = closure[cl*2]; 275*a6e0b375SMatthew G. Knepley if ((cell >= cStart) && (cell < cEnd)) {ierr = DMLabelSetValue(label, cell, values[v]);CHKERRQ(ierr); break;} 276*a6e0b375SMatthew G. Knepley } 277*a6e0b375SMatthew G. Knepley ierr = DMPlexRestoreTransitiveClosure(dm, face, PETSC_FALSE, &closureSize, &closure);CHKERRQ(ierr); 278*a6e0b375SMatthew G. Knepley } 279*a6e0b375SMatthew G. Knepley ierr = ISRestoreIndices(pointIS, &points);CHKERRQ(ierr); 280*a6e0b375SMatthew G. Knepley ierr = ISDestroy(&pointIS);CHKERRQ(ierr); 281*a6e0b375SMatthew G. Knepley } 282*a6e0b375SMatthew G. Knepley ierr = ISRestoreIndices(valueIS, &values);CHKERRQ(ierr); 283*a6e0b375SMatthew G. Knepley ierr = ISDestroy(&valueIS);CHKERRQ(ierr); 284*a6e0b375SMatthew G. Knepley PetscFunctionReturn(0); 285*a6e0b375SMatthew G. Knepley } 286*a6e0b375SMatthew G. Knepley 287*a6e0b375SMatthew G. Knepley /*@ 288f402d5e4SToby Isaac DMPlexLabelClearCells - Remove cells from a label 289f402d5e4SToby Isaac 290f402d5e4SToby Isaac Input Parameters: 291f402d5e4SToby Isaac + dm - The DM 292f402d5e4SToby Isaac - label - A DMLabel marking surface points and their adjacent cells 293f402d5e4SToby Isaac 294f402d5e4SToby Isaac Output Parameter: 295f402d5e4SToby Isaac . label - A DMLabel without cells 296f402d5e4SToby Isaac 297f402d5e4SToby Isaac Level: developer 298f402d5e4SToby Isaac 299*a6e0b375SMatthew G. Knepley Note: This undoes DMPlexLabelAddCells() or DMPlexLabelAddFaceCells() 300f402d5e4SToby Isaac 301f402d5e4SToby Isaac .seealso: DMPlexLabelComplete(), DMPlexLabelCohesiveComplete(), DMPlexLabelAddCells() 302f402d5e4SToby Isaac @*/ 303f402d5e4SToby Isaac PetscErrorCode DMPlexLabelClearCells(DM dm, DMLabel label) 304f402d5e4SToby Isaac { 305f402d5e4SToby Isaac IS valueIS; 306f402d5e4SToby Isaac const PetscInt *values; 307485ad865SMatthew G. Knepley PetscInt numValues, v, cStart, cEnd; 308f402d5e4SToby Isaac PetscErrorCode ierr; 309f402d5e4SToby Isaac 310f402d5e4SToby Isaac PetscFunctionBegin; 311485ad865SMatthew G. Knepley ierr = DMPlexGetInteriorCellStratum(dm, &cStart, &cEnd);CHKERRQ(ierr); 312f402d5e4SToby Isaac ierr = DMLabelGetNumValues(label, &numValues);CHKERRQ(ierr); 313f402d5e4SToby Isaac ierr = DMLabelGetValueIS(label, &valueIS);CHKERRQ(ierr); 314f402d5e4SToby Isaac ierr = ISGetIndices(valueIS, &values);CHKERRQ(ierr); 315f402d5e4SToby Isaac for (v = 0; v < numValues; ++v) { 316f402d5e4SToby Isaac IS pointIS; 317f402d5e4SToby Isaac const PetscInt *points; 318f402d5e4SToby Isaac PetscInt numPoints, p; 319f402d5e4SToby Isaac 320f402d5e4SToby Isaac ierr = DMLabelGetStratumSize(label, values[v], &numPoints);CHKERRQ(ierr); 321f402d5e4SToby Isaac ierr = DMLabelGetStratumIS(label, values[v], &pointIS);CHKERRQ(ierr); 322f402d5e4SToby Isaac ierr = ISGetIndices(pointIS, &points);CHKERRQ(ierr); 323f402d5e4SToby Isaac for (p = 0; p < numPoints; ++p) { 324f402d5e4SToby Isaac PetscInt point = points[p]; 325f402d5e4SToby Isaac 326f402d5e4SToby Isaac if (point >= cStart && point < cEnd) { 327f402d5e4SToby Isaac ierr = DMLabelClearValue(label,point,values[v]);CHKERRQ(ierr); 328f402d5e4SToby Isaac } 329f402d5e4SToby Isaac } 330f402d5e4SToby Isaac ierr = ISRestoreIndices(pointIS, &points);CHKERRQ(ierr); 331f402d5e4SToby Isaac ierr = ISDestroy(&pointIS);CHKERRQ(ierr); 332f402d5e4SToby Isaac } 333f402d5e4SToby Isaac ierr = ISRestoreIndices(valueIS, &values);CHKERRQ(ierr); 334f402d5e4SToby Isaac ierr = ISDestroy(&valueIS);CHKERRQ(ierr); 335f402d5e4SToby Isaac PetscFunctionReturn(0); 336f402d5e4SToby Isaac } 337f402d5e4SToby Isaac 33859eef20bSToby Isaac /* take (oldEnd, added) pairs, ordered by height and convert them to (oldstart, newstart) pairs, ordered by ascending 33959eef20bSToby Isaac * index (skipping first, which is (0,0)) */ 3402582d50cSToby Isaac PETSC_STATIC_INLINE PetscErrorCode DMPlexShiftPointSetUp_Internal(PetscInt depth, PetscInt depthShift[]) 341cd0c2139SMatthew G Knepley { 3422582d50cSToby Isaac PetscInt d, off = 0; 3432582d50cSToby Isaac 3442582d50cSToby Isaac PetscFunctionBegin; 34559eef20bSToby Isaac /* sort by (oldend): yes this is an O(n^2) sort, we expect depth <= 3 */ 3460974a383SToby Isaac for (d = 0; d < depth; d++) { 3472582d50cSToby Isaac PetscInt firstd = d; 3480974a383SToby Isaac PetscInt firstStart = depthShift[2*d]; 3492582d50cSToby Isaac PetscInt e; 3502582d50cSToby Isaac 3512582d50cSToby Isaac for (e = d+1; e <= depth; e++) { 3522582d50cSToby Isaac if (depthShift[2*e] < firstStart) { 3532582d50cSToby Isaac firstd = e; 3542582d50cSToby Isaac firstStart = depthShift[2*d]; 3552582d50cSToby Isaac } 3562582d50cSToby Isaac } 3572582d50cSToby Isaac if (firstd != d) { 3582582d50cSToby Isaac PetscInt swap[2]; 3592582d50cSToby Isaac 3602582d50cSToby Isaac e = firstd; 3612582d50cSToby Isaac swap[0] = depthShift[2*d]; 3622582d50cSToby Isaac swap[1] = depthShift[2*d+1]; 3632582d50cSToby Isaac depthShift[2*d] = depthShift[2*e]; 3642582d50cSToby Isaac depthShift[2*d+1] = depthShift[2*e+1]; 3652582d50cSToby Isaac depthShift[2*e] = swap[0]; 3662582d50cSToby Isaac depthShift[2*e+1] = swap[1]; 3672582d50cSToby Isaac } 3682582d50cSToby Isaac } 3692582d50cSToby Isaac /* convert (oldstart, added) to (oldstart, newstart) */ 3700974a383SToby Isaac for (d = 0; d <= depth; d++) { 3712582d50cSToby Isaac off += depthShift[2*d+1]; 37259eef20bSToby Isaac depthShift[2*d+1] = depthShift[2*d] + off; 3732582d50cSToby Isaac } 3742582d50cSToby Isaac PetscFunctionReturn(0); 3752582d50cSToby Isaac } 3762582d50cSToby Isaac 3772582d50cSToby Isaac /* depthShift is a list of (old, new) pairs */ 3782582d50cSToby Isaac PETSC_STATIC_INLINE PetscInt DMPlexShiftPoint_Internal(PetscInt p, PetscInt depth, PetscInt depthShift[]) 3792582d50cSToby Isaac { 3802582d50cSToby Isaac PetscInt d; 3812582d50cSToby Isaac PetscInt newOff = 0; 3822582d50cSToby Isaac 3832582d50cSToby Isaac for (d = 0; d <= depth; d++) { 3842582d50cSToby Isaac if (p < depthShift[2*d]) return p + newOff; 3852582d50cSToby Isaac else newOff = depthShift[2*d+1] - depthShift[2*d]; 3862582d50cSToby Isaac } 3870974a383SToby Isaac return p + newOff; 3882582d50cSToby Isaac } 3892582d50cSToby Isaac 3902582d50cSToby Isaac /* depthShift is a list of (old, new) pairs */ 3912582d50cSToby Isaac PETSC_STATIC_INLINE PetscInt DMPlexShiftPointInverse_Internal(PetscInt p, PetscInt depth, PetscInt depthShift[]) 3922582d50cSToby Isaac { 3932582d50cSToby Isaac PetscInt d; 3942582d50cSToby Isaac PetscInt newOff = 0; 3952582d50cSToby Isaac 3962582d50cSToby Isaac for (d = 0; d <= depth; d++) { 3972582d50cSToby Isaac if (p < depthShift[2*d+1]) return p + newOff; 3982582d50cSToby Isaac else newOff = depthShift[2*d] - depthShift[2*d+1]; 3992582d50cSToby Isaac } 4000974a383SToby Isaac return p + newOff; 401cd0c2139SMatthew G Knepley } 402cd0c2139SMatthew G Knepley 403cd0c2139SMatthew G Knepley static PetscErrorCode DMPlexShiftSizes_Internal(DM dm, PetscInt depthShift[], DM dmNew) 404cd0c2139SMatthew G Knepley { 405cd0c2139SMatthew G Knepley PetscInt depth = 0, d, pStart, pEnd, p; 406fa8e8ae5SToby Isaac DMLabel depthLabel; 407cd0c2139SMatthew G Knepley PetscErrorCode ierr; 408cd0c2139SMatthew G Knepley 409cd0c2139SMatthew G Knepley PetscFunctionBegin; 410cd0c2139SMatthew G Knepley ierr = DMPlexGetDepth(dm, &depth);CHKERRQ(ierr); 411cd0c2139SMatthew G Knepley if (depth < 0) PetscFunctionReturn(0); 412cd0c2139SMatthew G Knepley /* Step 1: Expand chart */ 413cd0c2139SMatthew G Knepley ierr = DMPlexGetChart(dm, &pStart, &pEnd);CHKERRQ(ierr); 4140974a383SToby Isaac pEnd = DMPlexShiftPoint_Internal(pEnd,depth,depthShift); 415cd0c2139SMatthew G Knepley ierr = DMPlexSetChart(dmNew, pStart, pEnd);CHKERRQ(ierr); 416fa8e8ae5SToby Isaac ierr = DMCreateLabel(dmNew,"depth");CHKERRQ(ierr); 417fa8e8ae5SToby Isaac ierr = DMPlexGetDepthLabel(dmNew,&depthLabel);CHKERRQ(ierr); 418cd0c2139SMatthew G Knepley /* Step 2: Set cone and support sizes */ 419cd0c2139SMatthew G Knepley for (d = 0; d <= depth; ++d) { 420fa8e8ae5SToby Isaac PetscInt pStartNew, pEndNew; 421fa8e8ae5SToby Isaac IS pIS; 422fa8e8ae5SToby Isaac 423cd0c2139SMatthew G Knepley ierr = DMPlexGetDepthStratum(dm, d, &pStart, &pEnd);CHKERRQ(ierr); 424fa8e8ae5SToby Isaac pStartNew = DMPlexShiftPoint_Internal(pStart, depth, depthShift); 425fa8e8ae5SToby Isaac pEndNew = DMPlexShiftPoint_Internal(pEnd, depth, depthShift); 426fa8e8ae5SToby Isaac ierr = ISCreateStride(PETSC_COMM_SELF, pEndNew - pStartNew, pStartNew, 1, &pIS);CHKERRQ(ierr); 427fa8e8ae5SToby Isaac ierr = DMLabelSetStratumIS(depthLabel, d, pIS);CHKERRQ(ierr); 428fa8e8ae5SToby Isaac ierr = ISDestroy(&pIS);CHKERRQ(ierr); 429cd0c2139SMatthew G Knepley for (p = pStart; p < pEnd; ++p) { 4302582d50cSToby Isaac PetscInt newp = DMPlexShiftPoint_Internal(p, depth, depthShift); 431cd0c2139SMatthew G Knepley PetscInt size; 432cd0c2139SMatthew G Knepley 433cd0c2139SMatthew G Knepley ierr = DMPlexGetConeSize(dm, p, &size);CHKERRQ(ierr); 434cd0c2139SMatthew G Knepley ierr = DMPlexSetConeSize(dmNew, newp, size);CHKERRQ(ierr); 435cd0c2139SMatthew G Knepley ierr = DMPlexGetSupportSize(dm, p, &size);CHKERRQ(ierr); 436cd0c2139SMatthew G Knepley ierr = DMPlexSetSupportSize(dmNew, newp, size);CHKERRQ(ierr); 437cd0c2139SMatthew G Knepley } 438cd0c2139SMatthew G Knepley } 439cd0c2139SMatthew G Knepley PetscFunctionReturn(0); 440cd0c2139SMatthew G Knepley } 441cd0c2139SMatthew G Knepley 442cd0c2139SMatthew G Knepley static PetscErrorCode DMPlexShiftPoints_Internal(DM dm, PetscInt depthShift[], DM dmNew) 443cd0c2139SMatthew G Knepley { 4442582d50cSToby Isaac PetscInt *newpoints; 4452582d50cSToby Isaac PetscInt depth = 0, maxConeSize, maxSupportSize, maxConeSizeNew, maxSupportSizeNew, pStart, pEnd, p; 446cd0c2139SMatthew G Knepley PetscErrorCode ierr; 447cd0c2139SMatthew G Knepley 448cd0c2139SMatthew G Knepley PetscFunctionBegin; 449cd0c2139SMatthew G Knepley ierr = DMPlexGetDepth(dm, &depth);CHKERRQ(ierr); 450cd0c2139SMatthew G Knepley if (depth < 0) PetscFunctionReturn(0); 451cd0c2139SMatthew G Knepley ierr = DMPlexGetMaxSizes(dm, &maxConeSize, &maxSupportSize);CHKERRQ(ierr); 452dcbb62e8SMatthew G. Knepley ierr = DMPlexGetMaxSizes(dmNew, &maxConeSizeNew, &maxSupportSizeNew);CHKERRQ(ierr); 4532582d50cSToby Isaac ierr = PetscMalloc1(PetscMax(PetscMax(maxConeSize, maxSupportSize), PetscMax(maxConeSizeNew, maxSupportSizeNew)),&newpoints);CHKERRQ(ierr); 454cd0c2139SMatthew G Knepley /* Step 5: Set cones and supports */ 455cd0c2139SMatthew G Knepley ierr = DMPlexGetChart(dm, &pStart, &pEnd);CHKERRQ(ierr); 456cd0c2139SMatthew G Knepley for (p = pStart; p < pEnd; ++p) { 457cd0c2139SMatthew G Knepley const PetscInt *points = NULL, *orientations = NULL; 4582582d50cSToby Isaac PetscInt size,sizeNew, i, newp = DMPlexShiftPoint_Internal(p, depth, depthShift); 459cd0c2139SMatthew G Knepley 460cd0c2139SMatthew G Knepley ierr = DMPlexGetConeSize(dm, p, &size);CHKERRQ(ierr); 461cd0c2139SMatthew G Knepley ierr = DMPlexGetCone(dm, p, &points);CHKERRQ(ierr); 462cd0c2139SMatthew G Knepley ierr = DMPlexGetConeOrientation(dm, p, &orientations);CHKERRQ(ierr); 463cd0c2139SMatthew G Knepley for (i = 0; i < size; ++i) { 4642582d50cSToby Isaac newpoints[i] = DMPlexShiftPoint_Internal(points[i], depth, depthShift); 465cd0c2139SMatthew G Knepley } 466cd0c2139SMatthew G Knepley ierr = DMPlexSetCone(dmNew, newp, newpoints);CHKERRQ(ierr); 467cd0c2139SMatthew G Knepley ierr = DMPlexSetConeOrientation(dmNew, newp, orientations);CHKERRQ(ierr); 468cd0c2139SMatthew G Knepley ierr = DMPlexGetSupportSize(dm, p, &size);CHKERRQ(ierr); 469dcbb62e8SMatthew G. Knepley ierr = DMPlexGetSupportSize(dmNew, newp, &sizeNew);CHKERRQ(ierr); 470cd0c2139SMatthew G Knepley ierr = DMPlexGetSupport(dm, p, &points);CHKERRQ(ierr); 471cd0c2139SMatthew G Knepley for (i = 0; i < size; ++i) { 4722582d50cSToby Isaac newpoints[i] = DMPlexShiftPoint_Internal(points[i], depth, depthShift); 473cd0c2139SMatthew G Knepley } 474dcbb62e8SMatthew G. Knepley for (i = size; i < sizeNew; ++i) newpoints[i] = 0; 475cd0c2139SMatthew G Knepley ierr = DMPlexSetSupport(dmNew, newp, newpoints);CHKERRQ(ierr); 476cd0c2139SMatthew G Knepley } 4772582d50cSToby Isaac ierr = PetscFree(newpoints);CHKERRQ(ierr); 478cd0c2139SMatthew G Knepley PetscFunctionReturn(0); 479cd0c2139SMatthew G Knepley } 480cd0c2139SMatthew G Knepley 481cd0c2139SMatthew G Knepley static PetscErrorCode DMPlexShiftCoordinates_Internal(DM dm, PetscInt depthShift[], DM dmNew) 482cd0c2139SMatthew G Knepley { 483cd0c2139SMatthew G Knepley PetscSection coordSection, newCoordSection; 484cd0c2139SMatthew G Knepley Vec coordinates, newCoordinates; 485cd0c2139SMatthew G Knepley PetscScalar *coords, *newCoords; 486f2b8cce1SMatthew G. Knepley PetscInt coordSize, sStart, sEnd; 487f2b8cce1SMatthew G. Knepley PetscInt dim, depth = 0, cStart, cEnd, cStartNew, cEndNew, c, vStart, vEnd, vStartNew, vEndNew, v; 488f2b8cce1SMatthew G. Knepley PetscBool hasCells; 489cd0c2139SMatthew G Knepley PetscErrorCode ierr; 490cd0c2139SMatthew G Knepley 491cd0c2139SMatthew G Knepley PetscFunctionBegin; 492f2b8cce1SMatthew G. Knepley ierr = DMGetCoordinateDim(dm, &dim);CHKERRQ(ierr); 493c0e8cf5fSMatthew G. Knepley ierr = DMSetCoordinateDim(dmNew, dim);CHKERRQ(ierr); 494cd0c2139SMatthew G Knepley ierr = DMPlexGetDepth(dm, &depth);CHKERRQ(ierr); 495cd0c2139SMatthew G Knepley /* Step 8: Convert coordinates */ 496cd0c2139SMatthew G Knepley ierr = DMPlexGetDepthStratum(dm, 0, &vStart, &vEnd);CHKERRQ(ierr); 497f2b8cce1SMatthew G. Knepley ierr = DMPlexGetHeightStratum(dm, 0, &cStart, &cEnd);CHKERRQ(ierr); 498cd0c2139SMatthew G Knepley ierr = DMPlexGetDepthStratum(dmNew, 0, &vStartNew, &vEndNew);CHKERRQ(ierr); 499f2b8cce1SMatthew G. Knepley ierr = DMPlexGetHeightStratum(dmNew, 0, &cStartNew, &cEndNew);CHKERRQ(ierr); 50069d8a9ceSMatthew G. Knepley ierr = DMGetCoordinateSection(dm, &coordSection);CHKERRQ(ierr); 501cd0c2139SMatthew G Knepley ierr = PetscSectionCreate(PetscObjectComm((PetscObject)dm), &newCoordSection);CHKERRQ(ierr); 502cd0c2139SMatthew G Knepley ierr = PetscSectionSetNumFields(newCoordSection, 1);CHKERRQ(ierr); 503cd0c2139SMatthew G Knepley ierr = PetscSectionSetFieldComponents(newCoordSection, 0, dim);CHKERRQ(ierr); 504f2b8cce1SMatthew G. Knepley ierr = PetscSectionGetChart(coordSection, &sStart, &sEnd);CHKERRQ(ierr); 505f2b8cce1SMatthew G. Knepley hasCells = sStart == cStart ? PETSC_TRUE : PETSC_FALSE; 506f2b8cce1SMatthew G. Knepley ierr = PetscSectionSetChart(newCoordSection, hasCells ? cStartNew : vStartNew, vEndNew);CHKERRQ(ierr); 507f2b8cce1SMatthew G. Knepley if (hasCells) { 508f2b8cce1SMatthew G. Knepley for (c = cStart; c < cEnd; ++c) { 509f2b8cce1SMatthew G. Knepley PetscInt cNew = DMPlexShiftPoint_Internal(c, depth, depthShift), dof; 510f2b8cce1SMatthew G. Knepley 511f2b8cce1SMatthew G. Knepley ierr = PetscSectionGetDof(coordSection, c, &dof);CHKERRQ(ierr); 512f2b8cce1SMatthew G. Knepley ierr = PetscSectionSetDof(newCoordSection, cNew, dof);CHKERRQ(ierr); 513f2b8cce1SMatthew G. Knepley ierr = PetscSectionSetFieldDof(newCoordSection, cNew, 0, dof);CHKERRQ(ierr); 514f2b8cce1SMatthew G. Knepley } 515f2b8cce1SMatthew G. Knepley } 516cd0c2139SMatthew G Knepley for (v = vStartNew; v < vEndNew; ++v) { 517cd0c2139SMatthew G Knepley ierr = PetscSectionSetDof(newCoordSection, v, dim);CHKERRQ(ierr); 518cd0c2139SMatthew G Knepley ierr = PetscSectionSetFieldDof(newCoordSection, v, 0, dim);CHKERRQ(ierr); 519cd0c2139SMatthew G Knepley } 520cd0c2139SMatthew G Knepley ierr = PetscSectionSetUp(newCoordSection);CHKERRQ(ierr); 52146e270d4SMatthew G. Knepley ierr = DMSetCoordinateSection(dmNew, PETSC_DETERMINE, newCoordSection);CHKERRQ(ierr); 522cd0c2139SMatthew G Knepley ierr = PetscSectionGetStorageSize(newCoordSection, &coordSize);CHKERRQ(ierr); 5238b9ced59SLisandro Dalcin ierr = VecCreate(PETSC_COMM_SELF, &newCoordinates);CHKERRQ(ierr); 524cd0c2139SMatthew G Knepley ierr = PetscObjectSetName((PetscObject) newCoordinates, "coordinates");CHKERRQ(ierr); 525cd0c2139SMatthew G Knepley ierr = VecSetSizes(newCoordinates, coordSize, PETSC_DETERMINE);CHKERRQ(ierr); 5264e90ef8eSMatthew G. Knepley ierr = VecSetBlockSize(newCoordinates, dim);CHKERRQ(ierr); 5272eb5907fSJed Brown ierr = VecSetType(newCoordinates,VECSTANDARD);CHKERRQ(ierr); 528cd0c2139SMatthew G Knepley ierr = DMSetCoordinatesLocal(dmNew, newCoordinates);CHKERRQ(ierr); 529cd0c2139SMatthew G Knepley ierr = DMGetCoordinatesLocal(dm, &coordinates);CHKERRQ(ierr); 530cd0c2139SMatthew G Knepley ierr = VecGetArray(coordinates, &coords);CHKERRQ(ierr); 531cd0c2139SMatthew G Knepley ierr = VecGetArray(newCoordinates, &newCoords);CHKERRQ(ierr); 532f2b8cce1SMatthew G. Knepley if (hasCells) { 533f2b8cce1SMatthew G. Knepley for (c = cStart; c < cEnd; ++c) { 534f2b8cce1SMatthew G. Knepley PetscInt cNew = DMPlexShiftPoint_Internal(c, depth, depthShift), dof, off, noff, d; 535f2b8cce1SMatthew G. Knepley 536f2b8cce1SMatthew G. Knepley ierr = PetscSectionGetDof(coordSection, c, &dof);CHKERRQ(ierr); 537f2b8cce1SMatthew G. Knepley ierr = PetscSectionGetOffset(coordSection, c, &off);CHKERRQ(ierr); 538f2b8cce1SMatthew G. Knepley ierr = PetscSectionGetOffset(newCoordSection, cNew, &noff);CHKERRQ(ierr); 539f2b8cce1SMatthew G. Knepley for (d = 0; d < dof; ++d) newCoords[noff+d] = coords[off+d]; 540f2b8cce1SMatthew G. Knepley } 541f2b8cce1SMatthew G. Knepley } 542cd0c2139SMatthew G Knepley for (v = vStart; v < vEnd; ++v) { 543cd0c2139SMatthew G Knepley PetscInt dof, off, noff, d; 544cd0c2139SMatthew G Knepley 545cd0c2139SMatthew G Knepley ierr = PetscSectionGetDof(coordSection, v, &dof);CHKERRQ(ierr); 546cd0c2139SMatthew G Knepley ierr = PetscSectionGetOffset(coordSection, v, &off);CHKERRQ(ierr); 5472582d50cSToby Isaac ierr = PetscSectionGetOffset(newCoordSection, DMPlexShiftPoint_Internal(v, depth, depthShift), &noff);CHKERRQ(ierr); 548f2b8cce1SMatthew G. Knepley for (d = 0; d < dof; ++d) newCoords[noff+d] = coords[off+d]; 549cd0c2139SMatthew G Knepley } 550cd0c2139SMatthew G Knepley ierr = VecRestoreArray(coordinates, &coords);CHKERRQ(ierr); 551cd0c2139SMatthew G Knepley ierr = VecRestoreArray(newCoordinates, &newCoords);CHKERRQ(ierr); 552cd0c2139SMatthew G Knepley ierr = VecDestroy(&newCoordinates);CHKERRQ(ierr); 553cd0c2139SMatthew G Knepley ierr = PetscSectionDestroy(&newCoordSection);CHKERRQ(ierr); 554cd0c2139SMatthew G Knepley PetscFunctionReturn(0); 555cd0c2139SMatthew G Knepley } 556cd0c2139SMatthew G Knepley 557cd0c2139SMatthew G Knepley static PetscErrorCode DMPlexShiftSF_Internal(DM dm, PetscInt depthShift[], DM dmNew) 558cd0c2139SMatthew G Knepley { 5592582d50cSToby Isaac PetscInt depth = 0; 560cd0c2139SMatthew G Knepley PetscSF sfPoint, sfPointNew; 561cd0c2139SMatthew G Knepley const PetscSFNode *remotePoints; 562cd0c2139SMatthew G Knepley PetscSFNode *gremotePoints; 563cd0c2139SMatthew G Knepley const PetscInt *localPoints; 564cd0c2139SMatthew G Knepley PetscInt *glocalPoints, *newLocation, *newRemoteLocation; 565cd0c2139SMatthew G Knepley PetscInt numRoots, numLeaves, l, pStart, pEnd, totShift = 0; 566cd0c2139SMatthew G Knepley PetscErrorCode ierr; 567cd0c2139SMatthew G Knepley 568cd0c2139SMatthew G Knepley PetscFunctionBegin; 569cd0c2139SMatthew G Knepley ierr = DMPlexGetDepth(dm, &depth);CHKERRQ(ierr); 570cd0c2139SMatthew G Knepley /* Step 9: Convert pointSF */ 571cd0c2139SMatthew G Knepley ierr = DMGetPointSF(dm, &sfPoint);CHKERRQ(ierr); 572cd0c2139SMatthew G Knepley ierr = DMGetPointSF(dmNew, &sfPointNew);CHKERRQ(ierr); 573cd0c2139SMatthew G Knepley ierr = DMPlexGetChart(dm, &pStart, &pEnd);CHKERRQ(ierr); 574cd0c2139SMatthew G Knepley ierr = PetscSFGetGraph(sfPoint, &numRoots, &numLeaves, &localPoints, &remotePoints);CHKERRQ(ierr); 5756e21efdcSToby Isaac totShift = DMPlexShiftPoint_Internal(pEnd,depth,depthShift) - pEnd; 576cd0c2139SMatthew G Knepley if (numRoots >= 0) { 577dcca6d9dSJed Brown ierr = PetscMalloc2(numRoots,&newLocation,pEnd-pStart,&newRemoteLocation);CHKERRQ(ierr); 5782582d50cSToby Isaac for (l=0; l<numRoots; l++) newLocation[l] = DMPlexShiftPoint_Internal(l, depth, depthShift); 579cd0c2139SMatthew G Knepley ierr = PetscSFBcastBegin(sfPoint, MPIU_INT, newLocation, newRemoteLocation);CHKERRQ(ierr); 580cd0c2139SMatthew G Knepley ierr = PetscSFBcastEnd(sfPoint, MPIU_INT, newLocation, newRemoteLocation);CHKERRQ(ierr); 581785e854fSJed Brown ierr = PetscMalloc1(numLeaves, &glocalPoints);CHKERRQ(ierr); 582785e854fSJed Brown ierr = PetscMalloc1(numLeaves, &gremotePoints);CHKERRQ(ierr); 583cd0c2139SMatthew G Knepley for (l = 0; l < numLeaves; ++l) { 5842582d50cSToby Isaac glocalPoints[l] = DMPlexShiftPoint_Internal(localPoints[l], depth, depthShift); 585cd0c2139SMatthew G Knepley gremotePoints[l].rank = remotePoints[l].rank; 586cd0c2139SMatthew G Knepley gremotePoints[l].index = newRemoteLocation[localPoints[l]]; 587cd0c2139SMatthew G Knepley } 588cd0c2139SMatthew G Knepley ierr = PetscFree2(newLocation,newRemoteLocation);CHKERRQ(ierr); 589cd0c2139SMatthew G Knepley ierr = PetscSFSetGraph(sfPointNew, numRoots + totShift, numLeaves, glocalPoints, PETSC_OWN_POINTER, gremotePoints, PETSC_OWN_POINTER);CHKERRQ(ierr); 590cd0c2139SMatthew G Knepley } 591cd0c2139SMatthew G Knepley PetscFunctionReturn(0); 592cd0c2139SMatthew G Knepley } 593cd0c2139SMatthew G Knepley 594cd0c2139SMatthew G Knepley static PetscErrorCode DMPlexShiftLabels_Internal(DM dm, PetscInt depthShift[], DM dmNew) 595cd0c2139SMatthew G Knepley { 596cd0c2139SMatthew G Knepley PetscSF sfPoint; 597cd0c2139SMatthew G Knepley DMLabel vtkLabel, ghostLabel; 598cd0c2139SMatthew G Knepley const PetscSFNode *leafRemote; 599cd0c2139SMatthew G Knepley const PetscInt *leafLocal; 6002582d50cSToby Isaac PetscInt depth = 0, numLeaves, numLabels, l, cStart, cEnd, c, fStart, fEnd, f; 601cd0c2139SMatthew G Knepley PetscMPIInt rank; 602cd0c2139SMatthew G Knepley PetscErrorCode ierr; 603cd0c2139SMatthew G Knepley 604cd0c2139SMatthew G Knepley PetscFunctionBegin; 605cd0c2139SMatthew G Knepley ierr = DMPlexGetDepth(dm, &depth);CHKERRQ(ierr); 606cd0c2139SMatthew G Knepley /* Step 10: Convert labels */ 607c58f1c22SToby Isaac ierr = DMGetNumLabels(dm, &numLabels);CHKERRQ(ierr); 608cd0c2139SMatthew G Knepley for (l = 0; l < numLabels; ++l) { 609cd0c2139SMatthew G Knepley DMLabel label, newlabel; 610cd0c2139SMatthew G Knepley const char *lname; 611fa8e8ae5SToby Isaac PetscBool isDepth, isDim; 612cd0c2139SMatthew G Knepley IS valueIS; 613cd0c2139SMatthew G Knepley const PetscInt *values; 614cd0c2139SMatthew G Knepley PetscInt numValues, val; 615cd0c2139SMatthew G Knepley 616c58f1c22SToby Isaac ierr = DMGetLabelName(dm, l, &lname);CHKERRQ(ierr); 617cd0c2139SMatthew G Knepley ierr = PetscStrcmp(lname, "depth", &isDepth);CHKERRQ(ierr); 618cd0c2139SMatthew G Knepley if (isDepth) continue; 619fa8e8ae5SToby Isaac ierr = PetscStrcmp(lname, "dim", &isDim);CHKERRQ(ierr); 620fa8e8ae5SToby Isaac if (isDim) continue; 621c58f1c22SToby Isaac ierr = DMCreateLabel(dmNew, lname);CHKERRQ(ierr); 622c58f1c22SToby Isaac ierr = DMGetLabel(dm, lname, &label);CHKERRQ(ierr); 623c58f1c22SToby Isaac ierr = DMGetLabel(dmNew, lname, &newlabel);CHKERRQ(ierr); 62464a6a1a4SToby Isaac ierr = DMLabelGetDefaultValue(label,&val);CHKERRQ(ierr); 62564a6a1a4SToby Isaac ierr = DMLabelSetDefaultValue(newlabel,val);CHKERRQ(ierr); 626cd0c2139SMatthew G Knepley ierr = DMLabelGetValueIS(label, &valueIS);CHKERRQ(ierr); 627cd0c2139SMatthew G Knepley ierr = ISGetLocalSize(valueIS, &numValues);CHKERRQ(ierr); 628cd0c2139SMatthew G Knepley ierr = ISGetIndices(valueIS, &values);CHKERRQ(ierr); 629cd0c2139SMatthew G Knepley for (val = 0; val < numValues; ++val) { 630cd0c2139SMatthew G Knepley IS pointIS; 631cd0c2139SMatthew G Knepley const PetscInt *points; 632cd0c2139SMatthew G Knepley PetscInt numPoints, p; 633cd0c2139SMatthew G Knepley 634cd0c2139SMatthew G Knepley ierr = DMLabelGetStratumIS(label, values[val], &pointIS);CHKERRQ(ierr); 635cd0c2139SMatthew G Knepley ierr = ISGetLocalSize(pointIS, &numPoints);CHKERRQ(ierr); 636cd0c2139SMatthew G Knepley ierr = ISGetIndices(pointIS, &points);CHKERRQ(ierr); 637cd0c2139SMatthew G Knepley for (p = 0; p < numPoints; ++p) { 6382582d50cSToby Isaac const PetscInt newpoint = DMPlexShiftPoint_Internal(points[p], depth, depthShift); 639cd0c2139SMatthew G Knepley 640cd0c2139SMatthew G Knepley ierr = DMLabelSetValue(newlabel, newpoint, values[val]);CHKERRQ(ierr); 641cd0c2139SMatthew G Knepley } 642cd0c2139SMatthew G Knepley ierr = ISRestoreIndices(pointIS, &points);CHKERRQ(ierr); 643cd0c2139SMatthew G Knepley ierr = ISDestroy(&pointIS);CHKERRQ(ierr); 644cd0c2139SMatthew G Knepley } 645cd0c2139SMatthew G Knepley ierr = ISRestoreIndices(valueIS, &values);CHKERRQ(ierr); 646cd0c2139SMatthew G Knepley ierr = ISDestroy(&valueIS);CHKERRQ(ierr); 647cd0c2139SMatthew G Knepley } 648cd0c2139SMatthew G Knepley /* Step 11: Make label for output (vtk) and to mark ghost points (ghost) */ 649cd0c2139SMatthew G Knepley ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)dm), &rank);CHKERRQ(ierr); 650cd0c2139SMatthew G Knepley ierr = DMGetPointSF(dm, &sfPoint);CHKERRQ(ierr); 651cd0c2139SMatthew G Knepley ierr = DMPlexGetHeightStratum(dm, 0, &cStart, &cEnd);CHKERRQ(ierr); 652cd0c2139SMatthew G Knepley ierr = PetscSFGetGraph(sfPoint, NULL, &numLeaves, &leafLocal, &leafRemote);CHKERRQ(ierr); 653c58f1c22SToby Isaac ierr = DMCreateLabel(dmNew, "vtk");CHKERRQ(ierr); 654c58f1c22SToby Isaac ierr = DMCreateLabel(dmNew, "ghost");CHKERRQ(ierr); 655c58f1c22SToby Isaac ierr = DMGetLabel(dmNew, "vtk", &vtkLabel);CHKERRQ(ierr); 656c58f1c22SToby Isaac ierr = DMGetLabel(dmNew, "ghost", &ghostLabel);CHKERRQ(ierr); 657cd0c2139SMatthew G Knepley for (l = 0, c = cStart; l < numLeaves && c < cEnd; ++l, ++c) { 658cd0c2139SMatthew G Knepley for (; c < leafLocal[l] && c < cEnd; ++c) { 659cd0c2139SMatthew G Knepley ierr = DMLabelSetValue(vtkLabel, c, 1);CHKERRQ(ierr); 660cd0c2139SMatthew G Knepley } 661cd0c2139SMatthew G Knepley if (leafLocal[l] >= cEnd) break; 662cd0c2139SMatthew G Knepley if (leafRemote[l].rank == rank) { 663cd0c2139SMatthew G Knepley ierr = DMLabelSetValue(vtkLabel, c, 1);CHKERRQ(ierr); 664cd0c2139SMatthew G Knepley } else { 665cd0c2139SMatthew G Knepley ierr = DMLabelSetValue(ghostLabel, c, 2);CHKERRQ(ierr); 666cd0c2139SMatthew G Knepley } 667cd0c2139SMatthew G Knepley } 668cd0c2139SMatthew G Knepley for (; c < cEnd; ++c) { 669cd0c2139SMatthew G Knepley ierr = DMLabelSetValue(vtkLabel, c, 1);CHKERRQ(ierr); 670cd0c2139SMatthew G Knepley } 671cd0c2139SMatthew G Knepley ierr = DMPlexGetHeightStratum(dmNew, 1, &fStart, &fEnd);CHKERRQ(ierr); 672cd0c2139SMatthew G Knepley for (f = fStart; f < fEnd; ++f) { 673cd0c2139SMatthew G Knepley PetscInt numCells; 674cd0c2139SMatthew G Knepley 675cd0c2139SMatthew G Knepley ierr = DMPlexGetSupportSize(dmNew, f, &numCells);CHKERRQ(ierr); 676cd0c2139SMatthew G Knepley if (numCells < 2) { 677cd0c2139SMatthew G Knepley ierr = DMLabelSetValue(ghostLabel, f, 1);CHKERRQ(ierr); 678cd0c2139SMatthew G Knepley } else { 679cd0c2139SMatthew G Knepley const PetscInt *cells = NULL; 680cd0c2139SMatthew G Knepley PetscInt vA, vB; 681cd0c2139SMatthew G Knepley 682cd0c2139SMatthew G Knepley ierr = DMPlexGetSupport(dmNew, f, &cells);CHKERRQ(ierr); 683cd0c2139SMatthew G Knepley ierr = DMLabelGetValue(vtkLabel, cells[0], &vA);CHKERRQ(ierr); 684cd0c2139SMatthew G Knepley ierr = DMLabelGetValue(vtkLabel, cells[1], &vB);CHKERRQ(ierr); 68590664b96SToby Isaac if (vA != 1 && vB != 1) {ierr = DMLabelSetValue(ghostLabel, f, 1);CHKERRQ(ierr);} 686cd0c2139SMatthew G Knepley } 687cd0c2139SMatthew G Knepley } 688cd0c2139SMatthew G Knepley PetscFunctionReturn(0); 689cd0c2139SMatthew G Knepley } 690cd0c2139SMatthew G Knepley 691ca04dac2SToby Isaac static PetscErrorCode DMPlexShiftTree_Internal(DM dm, PetscInt depthShift[], DM dmNew) 692ca04dac2SToby Isaac { 693ca04dac2SToby Isaac DM refTree; 694ca04dac2SToby Isaac PetscSection pSec; 695ca04dac2SToby Isaac PetscInt *parents, *childIDs; 696ca04dac2SToby Isaac PetscErrorCode ierr; 697ca04dac2SToby Isaac 698ca04dac2SToby Isaac PetscFunctionBegin; 699ca04dac2SToby Isaac ierr = DMPlexGetReferenceTree(dm,&refTree);CHKERRQ(ierr); 700ca04dac2SToby Isaac ierr = DMPlexSetReferenceTree(dmNew,refTree);CHKERRQ(ierr); 701ca04dac2SToby Isaac ierr = DMPlexGetTree(dm,&pSec,&parents,&childIDs,NULL,NULL);CHKERRQ(ierr); 702ca04dac2SToby Isaac if (pSec) { 7032582d50cSToby Isaac PetscInt p, pStart, pEnd, *parentsShifted, pStartShifted, pEndShifted, depth; 704fb4630b5SToby Isaac PetscInt *childIDsShifted; 705ca04dac2SToby Isaac PetscSection pSecShifted; 706ca04dac2SToby Isaac 707ca04dac2SToby Isaac ierr = PetscSectionGetChart(pSec,&pStart,&pEnd);CHKERRQ(ierr); 708ca04dac2SToby Isaac ierr = DMPlexGetDepth(dm,&depth);CHKERRQ(ierr); 7092582d50cSToby Isaac pStartShifted = DMPlexShiftPoint_Internal(pStart,depth,depthShift); 7102582d50cSToby Isaac pEndShifted = DMPlexShiftPoint_Internal(pEnd,depth,depthShift); 711fb4630b5SToby Isaac ierr = PetscMalloc2(pEndShifted - pStartShifted,&parentsShifted,pEndShifted-pStartShifted,&childIDsShifted);CHKERRQ(ierr); 712ca04dac2SToby Isaac ierr = PetscSectionCreate(PetscObjectComm((PetscObject)dmNew),&pSecShifted);CHKERRQ(ierr); 713ca04dac2SToby Isaac ierr = PetscSectionSetChart(pSecShifted,pStartShifted,pEndShifted);CHKERRQ(ierr); 714ca04dac2SToby Isaac for (p = pStartShifted; p < pEndShifted; p++) { 715fb4630b5SToby Isaac /* start off assuming no children */ 716fb4630b5SToby Isaac ierr = PetscSectionSetDof(pSecShifted,p,0);CHKERRQ(ierr); 717fb4630b5SToby Isaac } 718fb4630b5SToby Isaac for (p = pStart; p < pEnd; p++) { 719fb4630b5SToby Isaac PetscInt dof; 720fb4630b5SToby Isaac PetscInt pNew = DMPlexShiftPoint_Internal(p,depth,depthShift); 721ca04dac2SToby Isaac 722ca04dac2SToby Isaac ierr = PetscSectionGetDof(pSec,p,&dof);CHKERRQ(ierr); 723fb4630b5SToby Isaac ierr = PetscSectionSetDof(pSecShifted,pNew,dof);CHKERRQ(ierr); 724ca04dac2SToby Isaac } 725ca04dac2SToby Isaac ierr = PetscSectionSetUp(pSecShifted);CHKERRQ(ierr); 726fb4630b5SToby Isaac for (p = pStart; p < pEnd; p++) { 727fb4630b5SToby Isaac PetscInt dof; 728fb4630b5SToby Isaac PetscInt pNew = DMPlexShiftPoint_Internal(p,depth,depthShift); 729fb4630b5SToby Isaac 730fb4630b5SToby Isaac ierr = PetscSectionGetDof(pSec,p,&dof);CHKERRQ(ierr); 731fb4630b5SToby Isaac if (dof) { 732fb4630b5SToby Isaac PetscInt off, offNew; 733fb4630b5SToby Isaac 734fb4630b5SToby Isaac ierr = PetscSectionGetOffset(pSec,p,&off);CHKERRQ(ierr); 735fb4630b5SToby Isaac ierr = PetscSectionGetOffset(pSecShifted,pNew,&offNew);CHKERRQ(ierr); 736fb4630b5SToby Isaac parentsShifted[offNew] = DMPlexShiftPoint_Internal(parents[off],depth,depthShift); 737fb4630b5SToby Isaac childIDsShifted[offNew] = childIDs[off]; 738fb4630b5SToby Isaac } 739fb4630b5SToby Isaac } 740fb4630b5SToby Isaac ierr = DMPlexSetTree(dmNew,pSecShifted,parentsShifted,childIDsShifted);CHKERRQ(ierr); 741fb4630b5SToby Isaac ierr = PetscFree2(parentsShifted,childIDsShifted);CHKERRQ(ierr); 742e6885bbbSToby Isaac ierr = PetscSectionDestroy(&pSecShifted);CHKERRQ(ierr); 743ca04dac2SToby Isaac } 744ca04dac2SToby Isaac PetscFunctionReturn(0); 745ca04dac2SToby Isaac } 746ca04dac2SToby Isaac 747cd0c2139SMatthew G Knepley static PetscErrorCode DMPlexConstructGhostCells_Internal(DM dm, DMLabel label, PetscInt *numGhostCells, DM gdm) 748cd0c2139SMatthew G Knepley { 749da97024aSMatthew G. Knepley PetscSF sf; 750cd0c2139SMatthew G Knepley IS valueIS; 751da97024aSMatthew G. Knepley const PetscInt *values, *leaves; 752cd0c2139SMatthew G Knepley PetscInt *depthShift; 7532582d50cSToby Isaac PetscInt d, depth = 0, nleaves, loc, Ng, numFS, fs, fStart, fEnd, ghostCell, cEnd, c; 75490b157c4SStefano Zampini PetscBool isper; 75590b157c4SStefano Zampini const PetscReal *maxCell, *L; 75690b157c4SStefano Zampini const DMBoundaryType *bd; 757cd0c2139SMatthew G Knepley PetscErrorCode ierr; 758cd0c2139SMatthew G Knepley 759cd0c2139SMatthew G Knepley PetscFunctionBegin; 760da97024aSMatthew G. Knepley ierr = DMGetPointSF(dm, &sf);CHKERRQ(ierr); 761da97024aSMatthew G. Knepley ierr = PetscSFGetGraph(sf, NULL, &nleaves, &leaves, NULL);CHKERRQ(ierr); 762da97024aSMatthew G. Knepley nleaves = PetscMax(0, nleaves); 76346c796b9SMatthew G. Knepley ierr = DMPlexGetHeightStratum(dm, 1, &fStart, &fEnd);CHKERRQ(ierr); 764cd0c2139SMatthew G Knepley /* Count ghost cells */ 765cd0c2139SMatthew G Knepley ierr = DMLabelGetValueIS(label, &valueIS);CHKERRQ(ierr); 766cd0c2139SMatthew G Knepley ierr = ISGetLocalSize(valueIS, &numFS);CHKERRQ(ierr); 767cd0c2139SMatthew G Knepley ierr = ISGetIndices(valueIS, &values);CHKERRQ(ierr); 7684a6cfa73SMatthew G. Knepley Ng = 0; 769cd0c2139SMatthew G Knepley for (fs = 0; fs < numFS; ++fs) { 77046c796b9SMatthew G. Knepley IS faceIS; 77146c796b9SMatthew G. Knepley const PetscInt *faces; 77246c796b9SMatthew G. Knepley PetscInt numFaces, f, numBdFaces = 0; 773cd0c2139SMatthew G Knepley 77446c796b9SMatthew G. Knepley ierr = DMLabelGetStratumIS(label, values[fs], &faceIS);CHKERRQ(ierr); 77546c796b9SMatthew G. Knepley ierr = ISGetLocalSize(faceIS, &numFaces);CHKERRQ(ierr); 77646c796b9SMatthew G. Knepley ierr = ISGetIndices(faceIS, &faces);CHKERRQ(ierr); 77746c796b9SMatthew G. Knepley for (f = 0; f < numFaces; ++f) { 778ca04dac2SToby Isaac PetscInt numChildren; 779ca04dac2SToby Isaac 780da97024aSMatthew G. Knepley ierr = PetscFindInt(faces[f], nleaves, leaves, &loc);CHKERRQ(ierr); 781ca04dac2SToby Isaac ierr = DMPlexGetTreeChildren(dm,faces[f],&numChildren,NULL);CHKERRQ(ierr); 782ca04dac2SToby Isaac /* non-local and ancestors points don't get to register ghosts */ 783ca04dac2SToby Isaac if (loc >= 0 || numChildren) continue; 78446c796b9SMatthew G. Knepley if ((faces[f] >= fStart) && (faces[f] < fEnd)) ++numBdFaces; 78546c796b9SMatthew G. Knepley } 7864a6cfa73SMatthew G. Knepley Ng += numBdFaces; 78746c796b9SMatthew G. Knepley ierr = ISDestroy(&faceIS);CHKERRQ(ierr); 788cd0c2139SMatthew G Knepley } 789cd0c2139SMatthew G Knepley ierr = DMPlexGetDepth(dm, &depth);CHKERRQ(ierr); 7902582d50cSToby Isaac ierr = PetscMalloc1(2*(depth+1), &depthShift);CHKERRQ(ierr); 7912582d50cSToby Isaac for (d = 0; d <= depth; d++) { 79259eef20bSToby Isaac PetscInt dEnd; 7932582d50cSToby Isaac 7940974a383SToby Isaac ierr = DMPlexGetDepthStratum(dm,d,NULL,&dEnd);CHKERRQ(ierr); 79559eef20bSToby Isaac depthShift[2*d] = dEnd; 7962582d50cSToby Isaac depthShift[2*d+1] = 0; 7972582d50cSToby Isaac } 7982582d50cSToby Isaac if (depth >= 0) depthShift[2*depth+1] = Ng; 7992582d50cSToby Isaac ierr = DMPlexShiftPointSetUp_Internal(depth,depthShift);CHKERRQ(ierr); 800cd0c2139SMatthew G Knepley ierr = DMPlexShiftSizes_Internal(dm, depthShift, gdm);CHKERRQ(ierr); 801cd0c2139SMatthew G Knepley /* Step 3: Set cone/support sizes for new points */ 802cd0c2139SMatthew G Knepley ierr = DMPlexGetHeightStratum(dm, 0, NULL, &cEnd);CHKERRQ(ierr); 803485ad865SMatthew G. Knepley ierr = DMPlexSetGhostCellStratum(gdm, cEnd, PETSC_DETERMINE);CHKERRQ(ierr); 8044a6cfa73SMatthew G. Knepley for (c = cEnd; c < cEnd + Ng; ++c) { 805cd0c2139SMatthew G Knepley ierr = DMPlexSetConeSize(gdm, c, 1);CHKERRQ(ierr); 806cd0c2139SMatthew G Knepley } 807cd0c2139SMatthew G Knepley for (fs = 0; fs < numFS; ++fs) { 808cd0c2139SMatthew G Knepley IS faceIS; 809cd0c2139SMatthew G Knepley const PetscInt *faces; 810cd0c2139SMatthew G Knepley PetscInt numFaces, f; 811cd0c2139SMatthew G Knepley 812cd0c2139SMatthew G Knepley ierr = DMLabelGetStratumIS(label, values[fs], &faceIS);CHKERRQ(ierr); 813cd0c2139SMatthew G Knepley ierr = ISGetLocalSize(faceIS, &numFaces);CHKERRQ(ierr); 814cd0c2139SMatthew G Knepley ierr = ISGetIndices(faceIS, &faces);CHKERRQ(ierr); 815cd0c2139SMatthew G Knepley for (f = 0; f < numFaces; ++f) { 816ca04dac2SToby Isaac PetscInt size, numChildren; 817cd0c2139SMatthew G Knepley 818da97024aSMatthew G. Knepley ierr = PetscFindInt(faces[f], nleaves, leaves, &loc);CHKERRQ(ierr); 819ca04dac2SToby Isaac ierr = DMPlexGetTreeChildren(dm,faces[f],&numChildren,NULL);CHKERRQ(ierr); 820ca04dac2SToby Isaac if (loc >= 0 || numChildren) continue; 82146c796b9SMatthew G. Knepley if ((faces[f] < fStart) || (faces[f] >= fEnd)) continue; 822cd0c2139SMatthew G Knepley ierr = DMPlexGetSupportSize(dm, faces[f], &size);CHKERRQ(ierr); 8234553fd90SToby Isaac if (size != 1) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "DM has boundary face %d with %d support cells", faces[f], size); 8244a6cfa73SMatthew G. Knepley ierr = DMPlexSetSupportSize(gdm, faces[f] + Ng, 2);CHKERRQ(ierr); 825cd0c2139SMatthew G Knepley } 826cd0c2139SMatthew G Knepley ierr = ISRestoreIndices(faceIS, &faces);CHKERRQ(ierr); 827cd0c2139SMatthew G Knepley ierr = ISDestroy(&faceIS);CHKERRQ(ierr); 828cd0c2139SMatthew G Knepley } 829cd0c2139SMatthew G Knepley /* Step 4: Setup ghosted DM */ 830cd0c2139SMatthew G Knepley ierr = DMSetUp(gdm);CHKERRQ(ierr); 831cd0c2139SMatthew G Knepley ierr = DMPlexShiftPoints_Internal(dm, depthShift, gdm);CHKERRQ(ierr); 832cd0c2139SMatthew G Knepley /* Step 6: Set cones and supports for new points */ 833cd0c2139SMatthew G Knepley ghostCell = cEnd; 834cd0c2139SMatthew G Knepley for (fs = 0; fs < numFS; ++fs) { 835cd0c2139SMatthew G Knepley IS faceIS; 836cd0c2139SMatthew G Knepley const PetscInt *faces; 837cd0c2139SMatthew G Knepley PetscInt numFaces, f; 838cd0c2139SMatthew G Knepley 839cd0c2139SMatthew G Knepley ierr = DMLabelGetStratumIS(label, values[fs], &faceIS);CHKERRQ(ierr); 840cd0c2139SMatthew G Knepley ierr = ISGetLocalSize(faceIS, &numFaces);CHKERRQ(ierr); 841cd0c2139SMatthew G Knepley ierr = ISGetIndices(faceIS, &faces);CHKERRQ(ierr); 84246c796b9SMatthew G. Knepley for (f = 0; f < numFaces; ++f) { 843ca04dac2SToby Isaac PetscInt newFace = faces[f] + Ng, numChildren; 844cd0c2139SMatthew G Knepley 845da97024aSMatthew G. Knepley ierr = PetscFindInt(faces[f], nleaves, leaves, &loc);CHKERRQ(ierr); 846ca04dac2SToby Isaac ierr = DMPlexGetTreeChildren(dm,faces[f],&numChildren,NULL);CHKERRQ(ierr); 847ca04dac2SToby Isaac if (loc >= 0 || numChildren) continue; 84846c796b9SMatthew G. Knepley if ((faces[f] < fStart) || (faces[f] >= fEnd)) continue; 849cd0c2139SMatthew G Knepley ierr = DMPlexSetCone(gdm, ghostCell, &newFace);CHKERRQ(ierr); 850cd0c2139SMatthew G Knepley ierr = DMPlexInsertSupport(gdm, newFace, 1, ghostCell);CHKERRQ(ierr); 85146c796b9SMatthew G. Knepley ++ghostCell; 852cd0c2139SMatthew G Knepley } 853cd0c2139SMatthew G Knepley ierr = ISRestoreIndices(faceIS, &faces);CHKERRQ(ierr); 854cd0c2139SMatthew G Knepley ierr = ISDestroy(&faceIS);CHKERRQ(ierr); 855cd0c2139SMatthew G Knepley } 856cd0c2139SMatthew G Knepley ierr = ISRestoreIndices(valueIS, &values);CHKERRQ(ierr); 857cd0c2139SMatthew G Knepley ierr = ISDestroy(&valueIS);CHKERRQ(ierr); 858cd0c2139SMatthew G Knepley ierr = DMPlexShiftCoordinates_Internal(dm, depthShift, gdm);CHKERRQ(ierr); 859cd0c2139SMatthew G Knepley ierr = DMPlexShiftSF_Internal(dm, depthShift, gdm);CHKERRQ(ierr); 860cd0c2139SMatthew G Knepley ierr = DMPlexShiftLabels_Internal(dm, depthShift, gdm);CHKERRQ(ierr); 861ca04dac2SToby Isaac ierr = DMPlexShiftTree_Internal(dm, depthShift, gdm);CHKERRQ(ierr); 862cd0c2139SMatthew G Knepley ierr = PetscFree(depthShift);CHKERRQ(ierr); 863966c7b3fSMatthew G. Knepley /* Step 7: Periodicity */ 86490b157c4SStefano Zampini ierr = DMGetPeriodicity(dm, &isper, &maxCell, &L, &bd);CHKERRQ(ierr); 86590b157c4SStefano Zampini ierr = DMSetPeriodicity(gdm, isper, maxCell, L, bd);CHKERRQ(ierr); 8664a6cfa73SMatthew G. Knepley if (numGhostCells) *numGhostCells = Ng; 867cd0c2139SMatthew G Knepley PetscFunctionReturn(0); 868cd0c2139SMatthew G Knepley } 869cd0c2139SMatthew G Knepley 870cd0c2139SMatthew G Knepley /*@C 871cd0c2139SMatthew G Knepley DMPlexConstructGhostCells - Construct ghost cells which connect to every boundary face 872cd0c2139SMatthew G Knepley 873cd0c2139SMatthew G Knepley Collective on dm 874cd0c2139SMatthew G Knepley 875cd0c2139SMatthew G Knepley Input Parameters: 876cd0c2139SMatthew G Knepley + dm - The original DM 877cd0c2139SMatthew G Knepley - labelName - The label specifying the boundary faces, or "Face Sets" if this is NULL 878cd0c2139SMatthew G Knepley 879cd0c2139SMatthew G Knepley Output Parameters: 880cd0c2139SMatthew G Knepley + numGhostCells - The number of ghost cells added to the DM 881cd0c2139SMatthew G Knepley - dmGhosted - The new DM 882cd0c2139SMatthew G Knepley 883cd0c2139SMatthew G Knepley Note: If no label exists of that name, one will be created marking all boundary faces 884cd0c2139SMatthew G Knepley 885cd0c2139SMatthew G Knepley Level: developer 886cd0c2139SMatthew G Knepley 887cd0c2139SMatthew G Knepley .seealso: DMCreate() 88831266bc0SMatthew G. Knepley @*/ 889cd0c2139SMatthew G Knepley PetscErrorCode DMPlexConstructGhostCells(DM dm, const char labelName[], PetscInt *numGhostCells, DM *dmGhosted) 890cd0c2139SMatthew G Knepley { 891cd0c2139SMatthew G Knepley DM gdm; 892cd0c2139SMatthew G Knepley DMLabel label; 893cd0c2139SMatthew G Knepley const char *name = labelName ? labelName : "Face Sets"; 894d80ece95SMatthew G. Knepley PetscInt dim, Ng = 0, cMax, fMax, eMax, vMax; 895b0441da4SMatthew G. Knepley PetscBool useCone, useClosure; 896cd0c2139SMatthew G Knepley PetscErrorCode ierr; 897cd0c2139SMatthew G Knepley 898cd0c2139SMatthew G Knepley PetscFunctionBegin; 899cd0c2139SMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 9004a6cfa73SMatthew G. Knepley if (numGhostCells) PetscValidPointer(numGhostCells, 3); 901cd0c2139SMatthew G Knepley PetscValidPointer(dmGhosted, 4); 902cd0c2139SMatthew G Knepley ierr = DMCreate(PetscObjectComm((PetscObject)dm), &gdm);CHKERRQ(ierr); 903cd0c2139SMatthew G Knepley ierr = DMSetType(gdm, DMPLEX);CHKERRQ(ierr); 904c73cfb54SMatthew G. Knepley ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr); 905c73cfb54SMatthew G. Knepley ierr = DMSetDimension(gdm, dim);CHKERRQ(ierr); 906b0441da4SMatthew G. Knepley ierr = DMGetBasicAdjacency(dm, &useCone, &useClosure);CHKERRQ(ierr); 907b0441da4SMatthew G. Knepley ierr = DMSetBasicAdjacency(gdm, useCone, useClosure);CHKERRQ(ierr); 908c58f1c22SToby Isaac ierr = DMGetLabel(dm, name, &label);CHKERRQ(ierr); 909cd0c2139SMatthew G Knepley if (!label) { 910cd0c2139SMatthew G Knepley /* Get label for boundary faces */ 911c58f1c22SToby Isaac ierr = DMCreateLabel(dm, name);CHKERRQ(ierr); 912c58f1c22SToby Isaac ierr = DMGetLabel(dm, name, &label);CHKERRQ(ierr); 913e752be1aSMatthew G. Knepley ierr = DMPlexMarkBoundaryFaces(dm, 1, label);CHKERRQ(ierr); 914cd0c2139SMatthew G Knepley } 915d80ece95SMatthew G. Knepley ierr = DMPlexConstructGhostCells_Internal(dm, label, &Ng, gdm);CHKERRQ(ierr); 916a6ba4734SToby Isaac ierr = DMCopyBoundary(dm, gdm);CHKERRQ(ierr); 917b0441da4SMatthew G. Knepley ierr = DMCopyDisc(dm, gdm);CHKERRQ(ierr); 918d80ece95SMatthew G. Knepley /* Copy the hybrid bounds */ 919d80ece95SMatthew G. Knepley ierr = DMPlexGetHybridBounds(dm, &cMax, &fMax, &eMax, &vMax);CHKERRQ(ierr); 920d80ece95SMatthew G. Knepley if (fMax >= 0) fMax += Ng; 921d80ece95SMatthew G. Knepley if (eMax >= 0) eMax += Ng; 922d80ece95SMatthew G. Knepley if (vMax >= 0) vMax += Ng; 923d80ece95SMatthew G. Knepley ierr = DMPlexSetHybridBounds(gdm, cMax, fMax, eMax, vMax);CHKERRQ(ierr); 924cad26855SMatthew G. Knepley gdm->setfromoptionscalled = dm->setfromoptionscalled; 925d80ece95SMatthew G. Knepley if (numGhostCells) *numGhostCells = Ng; 926cd0c2139SMatthew G Knepley *dmGhosted = gdm; 927cd0c2139SMatthew G Knepley PetscFunctionReturn(0); 928cd0c2139SMatthew G Knepley } 929cd0c2139SMatthew G Knepley 930607ab7a9SMatthew G. Knepley /* 931faedd622SMatthew G. Knepley We are adding three kinds of points here: 932607ab7a9SMatthew G. Knepley Replicated: Copies of points which exist in the mesh, such as vertices identified across a fault 933faedd622SMatthew G. Knepley Non-replicated: Points which exist on the fault, but are not replicated 934607ab7a9SMatthew G. Knepley Hybrid: Entirely new points, such as cohesive cells 935a6ae58d1SMatthew G. Knepley 936a6ae58d1SMatthew G. Knepley When creating subsequent cohesive cells, we shift the old hybrid cells to the end of the numbering at 937a6ae58d1SMatthew G. Knepley each depth so that the new split/hybrid points can be inserted as a block. 938607ab7a9SMatthew G. Knepley */ 9397db7e0a7SMatthew G. Knepley static PetscErrorCode DMPlexConstructCohesiveCells_Internal(DM dm, DMLabel label, DMLabel splitLabel, DM sdm) 940cd0c2139SMatthew G Knepley { 941cd0c2139SMatthew G Knepley MPI_Comm comm; 942607ab7a9SMatthew G. Knepley IS valueIS; 943607ab7a9SMatthew G. Knepley PetscInt numSP = 0; /* The number of depths for which we have replicated points */ 944607ab7a9SMatthew G. Knepley const PetscInt *values; /* List of depths for which we have replicated points */ 94518c5995bSMatthew G. Knepley IS *splitIS; 94618c5995bSMatthew G. Knepley IS *unsplitIS; 947607ab7a9SMatthew G. Knepley PetscInt *numSplitPoints; /* The number of replicated points at each depth */ 94818c5995bSMatthew G. Knepley PetscInt *numUnsplitPoints; /* The number of non-replicated points at each depth which still give rise to hybrid points */ 94936dbac82SMatthew G. Knepley PetscInt *numHybridPoints; /* The number of new hybrid points at each depth */ 95036dbac82SMatthew G. Knepley PetscInt *numHybridPointsOld; /* The number of existing hybrid points at each depth */ 951607ab7a9SMatthew G. Knepley const PetscInt **splitPoints; /* Replicated points for each depth */ 95218c5995bSMatthew G. Knepley const PetscInt **unsplitPoints; /* Non-replicated points for each depth */ 953cd0c2139SMatthew G Knepley PetscSection coordSection; 954cd0c2139SMatthew G Knepley Vec coordinates; 955cd0c2139SMatthew G Knepley PetscScalar *coords; 956a6ae58d1SMatthew G. Knepley PetscInt *depthMax; /* The first hybrid point at each depth in the original mesh */ 957a6ae58d1SMatthew G. Knepley PetscInt *depthEnd; /* The point limit at each depth in the original mesh */ 958607ab7a9SMatthew G. Knepley PetscInt *depthShift; /* Number of replicated+hybrid points at each depth */ 959607ab7a9SMatthew G. Knepley PetscInt *pMaxNew; /* The first replicated point at each depth in the new mesh, hybrids come after this */ 960607ab7a9SMatthew G. Knepley PetscInt *coneNew, *coneONew, *supportNew; 96118c5995bSMatthew G. Knepley PetscInt shift = 100, shift2 = 200, depth = 0, dep, dim, d, sp, maxConeSize, maxSupportSize, maxConeSizeNew, maxSupportSizeNew, numLabels, vStart, vEnd, pEnd, p, v; 962cd0c2139SMatthew G Knepley PetscErrorCode ierr; 963cd0c2139SMatthew G Knepley 964cd0c2139SMatthew G Knepley PetscFunctionBegin; 965cd0c2139SMatthew G Knepley ierr = PetscObjectGetComm((PetscObject)dm,&comm);CHKERRQ(ierr); 966c73cfb54SMatthew G. Knepley ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr); 967607ab7a9SMatthew G. Knepley ierr = DMPlexGetDepth(dm, &depth);CHKERRQ(ierr); 968fd4b9f15SMatthew G. Knepley ierr = DMPlexGetDepthStratum(dm, 0, &vStart, &vEnd);CHKERRQ(ierr); 969cd0c2139SMatthew G Knepley /* Count split points and add cohesive cells */ 970607ab7a9SMatthew G. Knepley ierr = DMPlexGetMaxSizes(dm, &maxConeSize, &maxSupportSize);CHKERRQ(ierr); 9712582d50cSToby Isaac ierr = PetscMalloc5(depth+1,&depthMax,depth+1,&depthEnd,2*(depth+1),&depthShift,depth+1,&pMaxNew,depth+1,&numHybridPointsOld);CHKERRQ(ierr); 972dcca6d9dSJed Brown ierr = PetscMalloc7(depth+1,&splitIS,depth+1,&unsplitIS,depth+1,&numSplitPoints,depth+1,&numUnsplitPoints,depth+1,&numHybridPoints,depth+1,&splitPoints,depth+1,&unsplitPoints);CHKERRQ(ierr); 973a6ae58d1SMatthew G. Knepley ierr = DMPlexGetHybridBounds(dm, depth >= 0 ? &depthMax[depth] : NULL, depth>1 ? &depthMax[depth-1] : NULL, depth>2 ? &depthMax[1] : NULL, depth >= 0 ? &depthMax[0] : NULL);CHKERRQ(ierr); 974607ab7a9SMatthew G. Knepley for (d = 0; d <= depth; ++d) { 975607ab7a9SMatthew G. Knepley ierr = DMPlexGetDepthStratum(dm, d, NULL, &pMaxNew[d]);CHKERRQ(ierr); 976a6ae58d1SMatthew G. Knepley depthEnd[d] = pMaxNew[d]; 977a6ae58d1SMatthew G. Knepley depthMax[d] = depthMax[d] < 0 ? depthEnd[d] : depthMax[d]; 978607ab7a9SMatthew G. Knepley numSplitPoints[d] = 0; 97918c5995bSMatthew G. Knepley numUnsplitPoints[d] = 0; 980607ab7a9SMatthew G. Knepley numHybridPoints[d] = 0; 981a6ae58d1SMatthew G. Knepley numHybridPointsOld[d] = depthMax[d] < 0 ? 0 : depthEnd[d] - depthMax[d]; 982607ab7a9SMatthew G. Knepley splitPoints[d] = NULL; 98318c5995bSMatthew G. Knepley unsplitPoints[d] = NULL; 98418c5995bSMatthew G. Knepley splitIS[d] = NULL; 98518c5995bSMatthew G. Knepley unsplitIS[d] = NULL; 98659eef20bSToby Isaac /* we are shifting the existing hybrid points with the stratum behind them, so 98759eef20bSToby Isaac * the split comes at the end of the normal points, i.e., at depthMax[d] */ 98859eef20bSToby Isaac depthShift[2*d] = depthMax[d]; 98959eef20bSToby Isaac depthShift[2*d+1] = 0; 990607ab7a9SMatthew G. Knepley } 991cd0c2139SMatthew G Knepley if (label) { 992cd0c2139SMatthew G Knepley ierr = DMLabelGetValueIS(label, &valueIS);CHKERRQ(ierr); 993cd0c2139SMatthew G Knepley ierr = ISGetLocalSize(valueIS, &numSP);CHKERRQ(ierr); 994cd0c2139SMatthew G Knepley ierr = ISGetIndices(valueIS, &values);CHKERRQ(ierr); 995cd0c2139SMatthew G Knepley } 996cd0c2139SMatthew G Knepley for (sp = 0; sp < numSP; ++sp) { 997cd0c2139SMatthew G Knepley const PetscInt dep = values[sp]; 998cd0c2139SMatthew G Knepley 999cd0c2139SMatthew G Knepley if ((dep < 0) || (dep > depth)) continue; 100018c5995bSMatthew G. Knepley ierr = DMLabelGetStratumIS(label, dep, &splitIS[dep]);CHKERRQ(ierr); 100118c5995bSMatthew G. Knepley if (splitIS[dep]) { 100218c5995bSMatthew G. Knepley ierr = ISGetLocalSize(splitIS[dep], &numSplitPoints[dep]);CHKERRQ(ierr); 100318c5995bSMatthew G. Knepley ierr = ISGetIndices(splitIS[dep], &splitPoints[dep]);CHKERRQ(ierr); 100418c5995bSMatthew G. Knepley } 100518c5995bSMatthew G. Knepley ierr = DMLabelGetStratumIS(label, shift2+dep, &unsplitIS[dep]);CHKERRQ(ierr); 100618c5995bSMatthew G. Knepley if (unsplitIS[dep]) { 100718c5995bSMatthew G. Knepley ierr = ISGetLocalSize(unsplitIS[dep], &numUnsplitPoints[dep]);CHKERRQ(ierr); 100818c5995bSMatthew G. Knepley ierr = ISGetIndices(unsplitIS[dep], &unsplitPoints[dep]);CHKERRQ(ierr); 1009cd0c2139SMatthew G Knepley } 1010cd0c2139SMatthew G Knepley } 1011607ab7a9SMatthew G. Knepley /* Calculate number of hybrid points */ 101218c5995bSMatthew G. Knepley for (d = 1; d <= depth; ++d) numHybridPoints[d] = numSplitPoints[d-1] + numUnsplitPoints[d-1]; /* There is a hybrid cell/face/edge for every split face/edge/vertex */ 10132582d50cSToby Isaac for (d = 0; d <= depth; ++d) depthShift[2*d+1] = numSplitPoints[d] + numHybridPoints[d]; 10143d3eaba7SBarry Smith ierr = DMPlexShiftPointSetUp_Internal(depth,depthShift);CHKERRQ(ierr); 101559eef20bSToby Isaac /* the end of the points in this stratum that come before the new points: 101659eef20bSToby Isaac * shifting pMaxNew[d] gets the new start of the next stratum, then count back the old hybrid points and the newly 101759eef20bSToby Isaac * added points */ 10182582d50cSToby Isaac for (d = 0; d <= depth; ++d) pMaxNew[d] = DMPlexShiftPoint_Internal(pMaxNew[d],depth,depthShift) - (numHybridPointsOld[d] + numSplitPoints[d] + numHybridPoints[d]); 1019cd0c2139SMatthew G Knepley ierr = DMPlexShiftSizes_Internal(dm, depthShift, sdm);CHKERRQ(ierr); 1020cd0c2139SMatthew G Knepley /* Step 3: Set cone/support sizes for new points */ 1021cd0c2139SMatthew G Knepley for (dep = 0; dep <= depth; ++dep) { 1022cd0c2139SMatthew G Knepley for (p = 0; p < numSplitPoints[dep]; ++p) { 1023cd0c2139SMatthew G Knepley const PetscInt oldp = splitPoints[dep][p]; 10242582d50cSToby Isaac const PetscInt newp = DMPlexShiftPoint_Internal(oldp, depth, depthShift) /*oldp + depthOffset[dep]*/; 10254c367dbcSMatthew G. Knepley const PetscInt splitp = p + pMaxNew[dep]; 1026cd0c2139SMatthew G Knepley const PetscInt *support; 10274c367dbcSMatthew G. Knepley PetscInt coneSize, supportSize, qf, qn, qp, e; 1028cd0c2139SMatthew G Knepley 1029cd0c2139SMatthew G Knepley ierr = DMPlexGetConeSize(dm, oldp, &coneSize);CHKERRQ(ierr); 1030cd0c2139SMatthew G Knepley ierr = DMPlexSetConeSize(sdm, splitp, coneSize);CHKERRQ(ierr); 1031cd0c2139SMatthew G Knepley ierr = DMPlexGetSupportSize(dm, oldp, &supportSize);CHKERRQ(ierr); 1032cd0c2139SMatthew G Knepley ierr = DMPlexSetSupportSize(sdm, splitp, supportSize);CHKERRQ(ierr); 1033cd0c2139SMatthew G Knepley if (dep == depth-1) { 10344c367dbcSMatthew G. Knepley const PetscInt hybcell = p + pMaxNew[dep+1] + numSplitPoints[dep+1]; 10354c367dbcSMatthew G. Knepley 1036cd0c2139SMatthew G Knepley /* Add cohesive cells, they are prisms */ 10374c367dbcSMatthew G. Knepley ierr = DMPlexSetConeSize(sdm, hybcell, 2 + coneSize);CHKERRQ(ierr); 1038cd0c2139SMatthew G Knepley } else if (dep == 0) { 10394c367dbcSMatthew G. Knepley const PetscInt hybedge = p + pMaxNew[dep+1] + numSplitPoints[dep+1]; 1040cd0c2139SMatthew G Knepley 1041cd0c2139SMatthew G Knepley ierr = DMPlexGetSupport(dm, oldp, &support);CHKERRQ(ierr); 10424c367dbcSMatthew G. Knepley for (e = 0, qn = 0, qp = 0, qf = 0; e < supportSize; ++e) { 1043cd0c2139SMatthew G Knepley PetscInt val; 1044cd0c2139SMatthew G Knepley 1045cd0c2139SMatthew G Knepley ierr = DMLabelGetValue(label, support[e], &val);CHKERRQ(ierr); 10464c367dbcSMatthew G. Knepley if (val == 1) ++qf; 10474c367dbcSMatthew G. Knepley if ((val == 1) || (val == (shift + 1))) ++qn; 10484c367dbcSMatthew G. Knepley if ((val == 1) || (val == -(shift + 1))) ++qp; 1049cd0c2139SMatthew G Knepley } 10504c367dbcSMatthew G. Knepley /* Split old vertex: Edges into original vertex and new cohesive edge */ 10514c367dbcSMatthew G. Knepley ierr = DMPlexSetSupportSize(sdm, newp, qn+1);CHKERRQ(ierr); 10524c367dbcSMatthew G. Knepley /* Split new vertex: Edges into split vertex and new cohesive edge */ 10534c367dbcSMatthew G. Knepley ierr = DMPlexSetSupportSize(sdm, splitp, qp+1);CHKERRQ(ierr); 10544c367dbcSMatthew G. Knepley /* Add hybrid edge */ 10554c367dbcSMatthew G. Knepley ierr = DMPlexSetConeSize(sdm, hybedge, 2);CHKERRQ(ierr); 10564c367dbcSMatthew G. Knepley ierr = DMPlexSetSupportSize(sdm, hybedge, qf);CHKERRQ(ierr); 1057cd0c2139SMatthew G Knepley } else if (dep == dim-2) { 10584c367dbcSMatthew G. Knepley const PetscInt hybface = p + pMaxNew[dep+1] + numSplitPoints[dep+1]; 10594c367dbcSMatthew G. Knepley 1060cd0c2139SMatthew G Knepley ierr = DMPlexGetSupport(dm, oldp, &support);CHKERRQ(ierr); 10614c367dbcSMatthew G. Knepley for (e = 0, qn = 0, qp = 0, qf = 0; e < supportSize; ++e) { 1062cd0c2139SMatthew G Knepley PetscInt val; 1063cd0c2139SMatthew G Knepley 1064cd0c2139SMatthew G Knepley ierr = DMLabelGetValue(label, support[e], &val);CHKERRQ(ierr); 10654c367dbcSMatthew G. Knepley if (val == dim-1) ++qf; 10664c367dbcSMatthew G. Knepley if ((val == dim-1) || (val == (shift + dim-1))) ++qn; 10674c367dbcSMatthew G. Knepley if ((val == dim-1) || (val == -(shift + dim-1))) ++qp; 1068cd0c2139SMatthew G Knepley } 10694c367dbcSMatthew G. Knepley /* Split old edge: Faces into original edge and cohesive face (positive side?) */ 10704c367dbcSMatthew G. Knepley ierr = DMPlexSetSupportSize(sdm, newp, qn+1);CHKERRQ(ierr); 10714c367dbcSMatthew G. Knepley /* Split new edge: Faces into split edge and cohesive face (negative side?) */ 10724c367dbcSMatthew G. Knepley ierr = DMPlexSetSupportSize(sdm, splitp, qp+1);CHKERRQ(ierr); 10734c367dbcSMatthew G. Knepley /* Add hybrid face */ 10744c367dbcSMatthew G. Knepley ierr = DMPlexSetConeSize(sdm, hybface, 4);CHKERRQ(ierr); 10754c367dbcSMatthew G. Knepley ierr = DMPlexSetSupportSize(sdm, hybface, qf);CHKERRQ(ierr); 1076cd0c2139SMatthew G Knepley } 1077cd0c2139SMatthew G Knepley } 1078cd0c2139SMatthew G Knepley } 107918c5995bSMatthew G. Knepley for (dep = 0; dep <= depth; ++dep) { 108018c5995bSMatthew G. Knepley for (p = 0; p < numUnsplitPoints[dep]; ++p) { 108118c5995bSMatthew G. Knepley const PetscInt oldp = unsplitPoints[dep][p]; 10822582d50cSToby Isaac const PetscInt newp = DMPlexShiftPoint_Internal(oldp, depth, depthShift) /*oldp + depthOffset[dep]*/; 108318c5995bSMatthew G. Knepley const PetscInt *support; 1084da1dd7e4SMatthew G. Knepley PetscInt coneSize, supportSize, qf, e, s; 108518c5995bSMatthew G. Knepley 108618c5995bSMatthew G. Knepley ierr = DMPlexGetConeSize(dm, oldp, &coneSize);CHKERRQ(ierr); 108718c5995bSMatthew G. Knepley ierr = DMPlexGetSupportSize(dm, oldp, &supportSize);CHKERRQ(ierr); 108839254ff6SMatthew G. Knepley ierr = DMPlexGetSupport(dm, oldp, &support);CHKERRQ(ierr); 108918c5995bSMatthew G. Knepley if (dep == 0) { 109018c5995bSMatthew G. Knepley const PetscInt hybedge = p + pMaxNew[dep+1] + numSplitPoints[dep+1] + numSplitPoints[dep]; 109118c5995bSMatthew G. Knepley 109239254ff6SMatthew G. Knepley /* Unsplit vertex: Edges into original vertex, split edges, and new cohesive edge twice */ 109339254ff6SMatthew G. Knepley for (s = 0, qf = 0; s < supportSize; ++s, ++qf) { 109439254ff6SMatthew G. Knepley ierr = PetscFindInt(support[s], numSplitPoints[dep+1], splitPoints[dep+1], &e);CHKERRQ(ierr); 109539254ff6SMatthew G. Knepley if (e >= 0) ++qf; 109639254ff6SMatthew G. Knepley } 109739254ff6SMatthew G. Knepley ierr = DMPlexSetSupportSize(sdm, newp, qf+2);CHKERRQ(ierr); 109818c5995bSMatthew G. Knepley /* Add hybrid edge */ 109918c5995bSMatthew G. Knepley ierr = DMPlexSetConeSize(sdm, hybedge, 2);CHKERRQ(ierr); 1100e1757548SMatthew G. Knepley for (e = 0, qf = 0; e < supportSize; ++e) { 1101e1757548SMatthew G. Knepley PetscInt val; 1102e1757548SMatthew G. Knepley 1103e1757548SMatthew G. Knepley ierr = DMLabelGetValue(label, support[e], &val);CHKERRQ(ierr); 1104e1757548SMatthew G. Knepley /* Split and unsplit edges produce hybrid faces */ 1105da1dd7e4SMatthew G. Knepley if (val == 1) ++qf; 1106da1dd7e4SMatthew G. Knepley if (val == (shift2 + 1)) ++qf; 1107e1757548SMatthew G. Knepley } 1108e1757548SMatthew G. Knepley ierr = DMPlexSetSupportSize(sdm, hybedge, qf);CHKERRQ(ierr); 110918c5995bSMatthew G. Knepley } else if (dep == dim-2) { 111018c5995bSMatthew G. Knepley const PetscInt hybface = p + pMaxNew[dep+1] + numSplitPoints[dep+1] + numSplitPoints[dep]; 1111cd0c2139SMatthew G Knepley PetscInt val; 1112cd0c2139SMatthew G Knepley 1113da1dd7e4SMatthew G. Knepley for (e = 0, qf = 0; e < supportSize; ++e) { 1114cd0c2139SMatthew G Knepley ierr = DMLabelGetValue(label, support[e], &val);CHKERRQ(ierr); 1115da1dd7e4SMatthew G. Knepley if (val == dim-1) qf += 2; 1116da1dd7e4SMatthew G. Knepley else ++qf; 1117cd0c2139SMatthew G Knepley } 111818c5995bSMatthew G. Knepley /* Unsplit edge: Faces into original edge, split face, and cohesive face twice */ 1119da1dd7e4SMatthew G. Knepley ierr = DMPlexSetSupportSize(sdm, newp, qf+2);CHKERRQ(ierr); 112018c5995bSMatthew G. Knepley /* Add hybrid face */ 1121da1dd7e4SMatthew G. Knepley for (e = 0, qf = 0; e < supportSize; ++e) { 1122da1dd7e4SMatthew G. Knepley ierr = DMLabelGetValue(label, support[e], &val);CHKERRQ(ierr); 1123da1dd7e4SMatthew G. Knepley if (val == dim-1) ++qf; 1124da1dd7e4SMatthew G. Knepley } 112518c5995bSMatthew G. Knepley ierr = DMPlexSetConeSize(sdm, hybface, 4);CHKERRQ(ierr); 1126da1dd7e4SMatthew G. Knepley ierr = DMPlexSetSupportSize(sdm, hybface, qf);CHKERRQ(ierr); 1127cd0c2139SMatthew G Knepley } 1128cd0c2139SMatthew G Knepley } 1129cd0c2139SMatthew G Knepley } 1130cd0c2139SMatthew G Knepley /* Step 4: Setup split DM */ 1131cd0c2139SMatthew G Knepley ierr = DMSetUp(sdm);CHKERRQ(ierr); 1132cd0c2139SMatthew G Knepley ierr = DMPlexShiftPoints_Internal(dm, depthShift, sdm);CHKERRQ(ierr); 1133dcbb62e8SMatthew G. Knepley ierr = DMPlexGetMaxSizes(sdm, &maxConeSizeNew, &maxSupportSizeNew);CHKERRQ(ierr); 1134dcca6d9dSJed Brown ierr = PetscMalloc3(PetscMax(maxConeSize, maxConeSizeNew)*3,&coneNew,PetscMax(maxConeSize, maxConeSizeNew)*3,&coneONew,PetscMax(maxSupportSize, maxSupportSizeNew),&supportNew);CHKERRQ(ierr); 1135cd0c2139SMatthew G Knepley /* Step 6: Set cones and supports for new points */ 1136cd0c2139SMatthew G Knepley for (dep = 0; dep <= depth; ++dep) { 1137cd0c2139SMatthew G Knepley for (p = 0; p < numSplitPoints[dep]; ++p) { 1138cd0c2139SMatthew G Knepley const PetscInt oldp = splitPoints[dep][p]; 11392582d50cSToby Isaac const PetscInt newp = DMPlexShiftPoint_Internal(oldp, depth, depthShift) /*oldp + depthOffset[dep]*/; 11404c367dbcSMatthew G. Knepley const PetscInt splitp = p + pMaxNew[dep]; 1141cd0c2139SMatthew G Knepley const PetscInt *cone, *support, *ornt; 11424c367dbcSMatthew G. Knepley PetscInt coneSize, supportSize, q, qf, qn, qp, v, e, s; 1143cd0c2139SMatthew G Knepley 1144cd0c2139SMatthew G Knepley ierr = DMPlexGetConeSize(dm, oldp, &coneSize);CHKERRQ(ierr); 1145cd0c2139SMatthew G Knepley ierr = DMPlexGetCone(dm, oldp, &cone);CHKERRQ(ierr); 1146cd0c2139SMatthew G Knepley ierr = DMPlexGetConeOrientation(dm, oldp, &ornt);CHKERRQ(ierr); 1147cd0c2139SMatthew G Knepley ierr = DMPlexGetSupportSize(dm, oldp, &supportSize);CHKERRQ(ierr); 1148cd0c2139SMatthew G Knepley ierr = DMPlexGetSupport(dm, oldp, &support);CHKERRQ(ierr); 1149cd0c2139SMatthew G Knepley if (dep == depth-1) { 115096a07cd0SMatthew G. Knepley PetscBool hasUnsplit = PETSC_FALSE; 11514c367dbcSMatthew G. Knepley const PetscInt hybcell = p + pMaxNew[dep+1] + numSplitPoints[dep+1]; 1152cd0c2139SMatthew G Knepley const PetscInt *supportF; 1153cd0c2139SMatthew G Knepley 1154cd0c2139SMatthew G Knepley /* Split face: copy in old face to new face to start */ 1155cd0c2139SMatthew G Knepley ierr = DMPlexGetSupport(sdm, newp, &supportF);CHKERRQ(ierr); 1156cd0c2139SMatthew G Knepley ierr = DMPlexSetSupport(sdm, splitp, supportF);CHKERRQ(ierr); 1157cd0c2139SMatthew G Knepley /* Split old face: old vertices/edges in cone so no change */ 1158cd0c2139SMatthew G Knepley /* Split new face: new vertices/edges in cone */ 1159cd0c2139SMatthew G Knepley for (q = 0; q < coneSize; ++q) { 11604c367dbcSMatthew G. Knepley ierr = PetscFindInt(cone[q], numSplitPoints[dep-1], splitPoints[dep-1], &v);CHKERRQ(ierr); 116118c5995bSMatthew G. Knepley if (v < 0) { 116218c5995bSMatthew G. Knepley ierr = PetscFindInt(cone[q], numUnsplitPoints[dep-1], unsplitPoints[dep-1], &v);CHKERRQ(ierr); 116318c5995bSMatthew G. Knepley if (v < 0) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Could not locate point %d in split or unsplit points of depth %d", cone[q], dep-1); 11642582d50cSToby Isaac coneNew[2+q] = DMPlexShiftPoint_Internal(cone[q], depth, depthShift) /*cone[q] + depthOffset[dep-1]*/; 116596a07cd0SMatthew G. Knepley hasUnsplit = PETSC_TRUE; 116618c5995bSMatthew G. Knepley } else { 11674c367dbcSMatthew G. Knepley coneNew[2+q] = v + pMaxNew[dep-1]; 1168163235baSMatthew G. Knepley if (dep > 1) { 1169163235baSMatthew G. Knepley const PetscInt *econe; 1170163235baSMatthew G. Knepley PetscInt econeSize, r, vs, vu; 1171163235baSMatthew G. Knepley 1172163235baSMatthew G. Knepley ierr = DMPlexGetConeSize(dm, cone[q], &econeSize);CHKERRQ(ierr); 1173163235baSMatthew G. Knepley ierr = DMPlexGetCone(dm, cone[q], &econe);CHKERRQ(ierr); 1174163235baSMatthew G. Knepley for (r = 0; r < econeSize; ++r) { 1175163235baSMatthew G. Knepley ierr = PetscFindInt(econe[r], numSplitPoints[dep-2], splitPoints[dep-2], &vs);CHKERRQ(ierr); 1176163235baSMatthew G. Knepley ierr = PetscFindInt(econe[r], numUnsplitPoints[dep-2], unsplitPoints[dep-2], &vu);CHKERRQ(ierr); 1177163235baSMatthew G. Knepley if (vs >= 0) continue; 1178163235baSMatthew G. Knepley if (vu < 0) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Could not locate point %d in split or unsplit points of depth %d", econe[r], dep-2); 1179163235baSMatthew G. Knepley hasUnsplit = PETSC_TRUE; 1180163235baSMatthew G. Knepley } 1181163235baSMatthew G. Knepley } 1182cd0c2139SMatthew G Knepley } 1183cd0c2139SMatthew G Knepley } 1184cd0c2139SMatthew G Knepley ierr = DMPlexSetCone(sdm, splitp, &coneNew[2]);CHKERRQ(ierr); 1185cd0c2139SMatthew G Knepley ierr = DMPlexSetConeOrientation(sdm, splitp, ornt);CHKERRQ(ierr); 1186e537020bSMatthew G. Knepley /* Face support */ 1187cd0c2139SMatthew G Knepley for (s = 0; s < supportSize; ++s) { 1188cd0c2139SMatthew G Knepley PetscInt val; 1189cd0c2139SMatthew G Knepley 1190cd0c2139SMatthew G Knepley ierr = DMLabelGetValue(label, support[s], &val);CHKERRQ(ierr); 1191cd0c2139SMatthew G Knepley if (val < 0) { 1192cd0c2139SMatthew G Knepley /* Split old face: Replace negative side cell with cohesive cell */ 11934c367dbcSMatthew G. Knepley ierr = DMPlexInsertSupport(sdm, newp, s, hybcell);CHKERRQ(ierr); 1194cd0c2139SMatthew G Knepley } else { 1195cd0c2139SMatthew G Knepley /* Split new face: Replace positive side cell with cohesive cell */ 11964c367dbcSMatthew G. Knepley ierr = DMPlexInsertSupport(sdm, splitp, s, hybcell);CHKERRQ(ierr); 1197e537020bSMatthew G. Knepley /* Get orientation for cohesive face */ 1198e537020bSMatthew G. Knepley { 1199e537020bSMatthew G. Knepley const PetscInt *ncone, *nconeO; 1200e537020bSMatthew G. Knepley PetscInt nconeSize, nc; 1201e537020bSMatthew G. Knepley 1202e537020bSMatthew G. Knepley ierr = DMPlexGetConeSize(dm, support[s], &nconeSize);CHKERRQ(ierr); 1203e537020bSMatthew G. Knepley ierr = DMPlexGetCone(dm, support[s], &ncone);CHKERRQ(ierr); 1204e537020bSMatthew G. Knepley ierr = DMPlexGetConeOrientation(dm, support[s], &nconeO);CHKERRQ(ierr); 1205e537020bSMatthew G. Knepley for (nc = 0; nc < nconeSize; ++nc) { 1206e537020bSMatthew G. Knepley if (ncone[nc] == oldp) { 1207e537020bSMatthew G. Knepley coneONew[0] = nconeO[nc]; 1208e537020bSMatthew G. Knepley break; 1209cd0c2139SMatthew G Knepley } 1210cd0c2139SMatthew G Knepley } 1211e537020bSMatthew G. Knepley if (nc >= nconeSize) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Could not locate face %d in neighboring cell %d", oldp, support[s]); 1212e537020bSMatthew G. Knepley } 1213e537020bSMatthew G. Knepley } 1214e537020bSMatthew G. Knepley } 12154c367dbcSMatthew G. Knepley /* Cohesive cell: Old and new split face, then new cohesive faces */ 1216fd4b9f15SMatthew G. Knepley coneNew[0] = newp; /* Extracted negative side orientation above */ 12174c367dbcSMatthew G. Knepley coneNew[1] = splitp; 12184c367dbcSMatthew G. Knepley coneONew[1] = coneONew[0]; 1219e537020bSMatthew G. Knepley for (q = 0; q < coneSize; ++q) { 122018c5995bSMatthew G. Knepley ierr = PetscFindInt(cone[q], numSplitPoints[dep-1], splitPoints[dep-1], &v);CHKERRQ(ierr); 122118c5995bSMatthew G. Knepley if (v < 0) { 122218c5995bSMatthew G. Knepley ierr = PetscFindInt(cone[q], numUnsplitPoints[dep-1], unsplitPoints[dep-1], &v);CHKERRQ(ierr); 122318c5995bSMatthew G. Knepley coneNew[2+q] = v + pMaxNew[dep] + numSplitPoints[dep] + numSplitPoints[dep-1]; 122418c5995bSMatthew G. Knepley coneONew[2+q] = 0; 122518c5995bSMatthew G. Knepley } else { 122618c5995bSMatthew G. Knepley coneNew[2+q] = v + pMaxNew[dep] + numSplitPoints[dep]; 122718c5995bSMatthew G. Knepley } 1228e537020bSMatthew G. Knepley coneONew[2+q] = 0; 1229e537020bSMatthew G. Knepley } 12304c367dbcSMatthew G. Knepley ierr = DMPlexSetCone(sdm, hybcell, coneNew);CHKERRQ(ierr); 12314c367dbcSMatthew G. Knepley ierr = DMPlexSetConeOrientation(sdm, hybcell, coneONew);CHKERRQ(ierr); 123296a07cd0SMatthew G. Knepley /* Label the hybrid cells on the boundary of the split */ 123396a07cd0SMatthew G. Knepley if (hasUnsplit) {ierr = DMLabelSetValue(label, -hybcell, dim);CHKERRQ(ierr);} 1234cd0c2139SMatthew G Knepley } else if (dep == 0) { 12354c367dbcSMatthew G. Knepley const PetscInt hybedge = p + pMaxNew[dep+1] + numSplitPoints[dep+1]; 1236cd0c2139SMatthew G Knepley 1237cd0c2139SMatthew G Knepley /* Split old vertex: Edges in old split faces and new cohesive edge */ 12384c367dbcSMatthew G. Knepley for (e = 0, qn = 0; e < supportSize; ++e) { 1239cd0c2139SMatthew G Knepley PetscInt val; 1240cd0c2139SMatthew G Knepley 1241cd0c2139SMatthew G Knepley ierr = DMLabelGetValue(label, support[e], &val);CHKERRQ(ierr); 1242cd0c2139SMatthew G Knepley if ((val == 1) || (val == (shift + 1))) { 12432582d50cSToby Isaac supportNew[qn++] = DMPlexShiftPoint_Internal(support[e], depth, depthShift) /*support[e] + depthOffset[dep+1]*/; 1244cd0c2139SMatthew G Knepley } 1245cd0c2139SMatthew G Knepley } 12464c367dbcSMatthew G. Knepley supportNew[qn] = hybedge; 1247cd0c2139SMatthew G Knepley ierr = DMPlexSetSupport(sdm, newp, supportNew);CHKERRQ(ierr); 1248cd0c2139SMatthew G Knepley /* Split new vertex: Edges in new split faces and new cohesive edge */ 12494c367dbcSMatthew G. Knepley for (e = 0, qp = 0; e < supportSize; ++e) { 1250cd0c2139SMatthew G Knepley PetscInt val, edge; 1251cd0c2139SMatthew G Knepley 1252cd0c2139SMatthew G Knepley ierr = DMLabelGetValue(label, support[e], &val);CHKERRQ(ierr); 1253cd0c2139SMatthew G Knepley if (val == 1) { 12544c367dbcSMatthew G. Knepley ierr = PetscFindInt(support[e], numSplitPoints[dep+1], splitPoints[dep+1], &edge);CHKERRQ(ierr); 1255cd0c2139SMatthew G Knepley if (edge < 0) SETERRQ1(comm, PETSC_ERR_ARG_WRONG, "Edge %d is not a split edge", support[e]); 12564c367dbcSMatthew G. Knepley supportNew[qp++] = edge + pMaxNew[dep+1]; 1257cd0c2139SMatthew G Knepley } else if (val == -(shift + 1)) { 12582582d50cSToby Isaac supportNew[qp++] = DMPlexShiftPoint_Internal(support[e], depth, depthShift) /*support[e] + depthOffset[dep+1]*/; 1259cd0c2139SMatthew G Knepley } 1260cd0c2139SMatthew G Knepley } 12614c367dbcSMatthew G. Knepley supportNew[qp] = hybedge; 1262cd0c2139SMatthew G Knepley ierr = DMPlexSetSupport(sdm, splitp, supportNew);CHKERRQ(ierr); 12634c367dbcSMatthew G. Knepley /* Hybrid edge: Old and new split vertex */ 1264cd0c2139SMatthew G Knepley coneNew[0] = newp; 1265cd0c2139SMatthew G Knepley coneNew[1] = splitp; 12664c367dbcSMatthew G. Knepley ierr = DMPlexSetCone(sdm, hybedge, coneNew);CHKERRQ(ierr); 12674c367dbcSMatthew G. Knepley for (e = 0, qf = 0; e < supportSize; ++e) { 12684c367dbcSMatthew G. Knepley PetscInt val, edge; 12694c367dbcSMatthew G. Knepley 12704c367dbcSMatthew G. Knepley ierr = DMLabelGetValue(label, support[e], &val);CHKERRQ(ierr); 12714c367dbcSMatthew G. Knepley if (val == 1) { 12724c367dbcSMatthew G. Knepley ierr = PetscFindInt(support[e], numSplitPoints[dep+1], splitPoints[dep+1], &edge);CHKERRQ(ierr); 12734c367dbcSMatthew G. Knepley if (edge < 0) SETERRQ1(comm, PETSC_ERR_ARG_WRONG, "Edge %d is not a split edge", support[e]); 12744c367dbcSMatthew G. Knepley supportNew[qf++] = edge + pMaxNew[dep+2] + numSplitPoints[dep+2]; 12754c367dbcSMatthew G. Knepley } 12764c367dbcSMatthew G. Knepley } 12774c367dbcSMatthew G. Knepley ierr = DMPlexSetSupport(sdm, hybedge, supportNew);CHKERRQ(ierr); 1278cd0c2139SMatthew G Knepley } else if (dep == dim-2) { 12794c367dbcSMatthew G. Knepley const PetscInt hybface = p + pMaxNew[dep+1] + numSplitPoints[dep+1]; 12804c367dbcSMatthew G. Knepley 1281cd0c2139SMatthew G Knepley /* Split old edge: old vertices in cone so no change */ 1282cd0c2139SMatthew G Knepley /* Split new edge: new vertices in cone */ 1283cd0c2139SMatthew G Knepley for (q = 0; q < coneSize; ++q) { 12844c367dbcSMatthew G. Knepley ierr = PetscFindInt(cone[q], numSplitPoints[dep-1], splitPoints[dep-1], &v);CHKERRQ(ierr); 1285e1757548SMatthew G. Knepley if (v < 0) { 1286e1757548SMatthew G. Knepley ierr = PetscFindInt(cone[q], numUnsplitPoints[dep-1], unsplitPoints[dep-1], &v);CHKERRQ(ierr); 1287e1757548SMatthew G. Knepley if (v < 0) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Could not locate point %d in split or unsplit points of depth %d", cone[q], dep-1); 12882582d50cSToby Isaac coneNew[q] = DMPlexShiftPoint_Internal(cone[q], depth, depthShift) /*cone[q] + depthOffset[dep-1]*/; 1289e1757548SMatthew G. Knepley } else { 12904c367dbcSMatthew G. Knepley coneNew[q] = v + pMaxNew[dep-1]; 1291cd0c2139SMatthew G Knepley } 1292e1757548SMatthew G. Knepley } 1293cd0c2139SMatthew G Knepley ierr = DMPlexSetCone(sdm, splitp, coneNew);CHKERRQ(ierr); 1294cd0c2139SMatthew G Knepley /* Split old edge: Faces in positive side cells and old split faces */ 1295cd0c2139SMatthew G Knepley for (e = 0, q = 0; e < supportSize; ++e) { 1296cd0c2139SMatthew G Knepley PetscInt val; 1297cd0c2139SMatthew G Knepley 1298cd0c2139SMatthew G Knepley ierr = DMLabelGetValue(label, support[e], &val);CHKERRQ(ierr); 12994c367dbcSMatthew G. Knepley if (val == dim-1) { 13002582d50cSToby Isaac supportNew[q++] = DMPlexShiftPoint_Internal(support[e], depth, depthShift) /*support[e] + depthOffset[dep+1]*/; 13014c367dbcSMatthew G. Knepley } else if (val == (shift + dim-1)) { 13022582d50cSToby Isaac supportNew[q++] = DMPlexShiftPoint_Internal(support[e], depth, depthShift) /*support[e] + depthOffset[dep+1]*/; 1303cd0c2139SMatthew G Knepley } 1304cd0c2139SMatthew G Knepley } 1305b279cd2aSMatthew G. Knepley supportNew[q++] = p + pMaxNew[dep+1] + numSplitPoints[dep+1]; 1306cd0c2139SMatthew G Knepley ierr = DMPlexSetSupport(sdm, newp, supportNew);CHKERRQ(ierr); 1307cd0c2139SMatthew G Knepley /* Split new edge: Faces in negative side cells and new split faces */ 1308cd0c2139SMatthew G Knepley for (e = 0, q = 0; e < supportSize; ++e) { 1309cd0c2139SMatthew G Knepley PetscInt val, face; 1310cd0c2139SMatthew G Knepley 1311cd0c2139SMatthew G Knepley ierr = DMLabelGetValue(label, support[e], &val);CHKERRQ(ierr); 1312cd0c2139SMatthew G Knepley if (val == dim-1) { 13134c367dbcSMatthew G. Knepley ierr = PetscFindInt(support[e], numSplitPoints[dep+1], splitPoints[dep+1], &face);CHKERRQ(ierr); 1314cd0c2139SMatthew G Knepley if (face < 0) SETERRQ1(comm, PETSC_ERR_ARG_WRONG, "Face %d is not a split face", support[e]); 13154c367dbcSMatthew G. Knepley supportNew[q++] = face + pMaxNew[dep+1]; 1316cd0c2139SMatthew G Knepley } else if (val == -(shift + dim-1)) { 13172582d50cSToby Isaac supportNew[q++] = DMPlexShiftPoint_Internal(support[e], depth, depthShift) /*support[e] + depthOffset[dep+1]*/; 1318cd0c2139SMatthew G Knepley } 1319cd0c2139SMatthew G Knepley } 1320b279cd2aSMatthew G. Knepley supportNew[q++] = p + pMaxNew[dep+1] + numSplitPoints[dep+1]; 1321cd0c2139SMatthew G Knepley ierr = DMPlexSetSupport(sdm, splitp, supportNew);CHKERRQ(ierr); 13224c367dbcSMatthew G. Knepley /* Hybrid face */ 13234c367dbcSMatthew G. Knepley coneNew[0] = newp; 13244c367dbcSMatthew G. Knepley coneNew[1] = splitp; 13254c367dbcSMatthew G. Knepley for (v = 0; v < coneSize; ++v) { 13264c367dbcSMatthew G. Knepley PetscInt vertex; 13274c367dbcSMatthew G. Knepley ierr = PetscFindInt(cone[v], numSplitPoints[dep-1], splitPoints[dep-1], &vertex);CHKERRQ(ierr); 1328e1757548SMatthew G. Knepley if (vertex < 0) { 1329e1757548SMatthew G. Knepley ierr = PetscFindInt(cone[v], numUnsplitPoints[dep-1], unsplitPoints[dep-1], &vertex);CHKERRQ(ierr); 1330e1757548SMatthew G. Knepley if (vertex < 0) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Could not locate point %d in split or unsplit points of depth %d", cone[v], dep-1); 1331e1757548SMatthew G. Knepley coneNew[2+v] = vertex + pMaxNew[dep] + numSplitPoints[dep] + numSplitPoints[dep-1]; 1332e1757548SMatthew G. Knepley } else { 13334c367dbcSMatthew G. Knepley coneNew[2+v] = vertex + pMaxNew[dep] + numSplitPoints[dep]; 13344c367dbcSMatthew G. Knepley } 1335e1757548SMatthew G. Knepley } 13364c367dbcSMatthew G. Knepley ierr = DMPlexSetCone(sdm, hybface, coneNew);CHKERRQ(ierr); 13374c367dbcSMatthew G. Knepley for (e = 0, qf = 0; e < supportSize; ++e) { 13384c367dbcSMatthew G. Knepley PetscInt val, face; 13394c367dbcSMatthew G. Knepley 13404c367dbcSMatthew G. Knepley ierr = DMLabelGetValue(label, support[e], &val);CHKERRQ(ierr); 13414c367dbcSMatthew G. Knepley if (val == dim-1) { 13424c367dbcSMatthew G. Knepley ierr = PetscFindInt(support[e], numSplitPoints[dep+1], splitPoints[dep+1], &face);CHKERRQ(ierr); 13434c367dbcSMatthew G. Knepley if (face < 0) SETERRQ1(comm, PETSC_ERR_ARG_WRONG, "Face %d is not a split face", support[e]); 13444c367dbcSMatthew G. Knepley supportNew[qf++] = face + pMaxNew[dep+2] + numSplitPoints[dep+2]; 13454c367dbcSMatthew G. Knepley } 13464c367dbcSMatthew G. Knepley } 13474c367dbcSMatthew G. Knepley ierr = DMPlexSetSupport(sdm, hybface, supportNew);CHKERRQ(ierr); 1348cd0c2139SMatthew G Knepley } 1349cd0c2139SMatthew G Knepley } 1350cd0c2139SMatthew G Knepley } 135118c5995bSMatthew G. Knepley for (dep = 0; dep <= depth; ++dep) { 135218c5995bSMatthew G. Knepley for (p = 0; p < numUnsplitPoints[dep]; ++p) { 135318c5995bSMatthew G. Knepley const PetscInt oldp = unsplitPoints[dep][p]; 13542582d50cSToby Isaac const PetscInt newp = DMPlexShiftPoint_Internal(oldp, depth, depthShift) /*oldp + depthOffset[dep]*/; 135518c5995bSMatthew G. Knepley const PetscInt *cone, *support, *ornt; 1356e1757548SMatthew G. Knepley PetscInt coneSize, supportSize, supportSizeNew, q, qf, e, f, s; 135718c5995bSMatthew G. Knepley 135818c5995bSMatthew G. Knepley ierr = DMPlexGetConeSize(dm, oldp, &coneSize);CHKERRQ(ierr); 135918c5995bSMatthew G. Knepley ierr = DMPlexGetCone(dm, oldp, &cone);CHKERRQ(ierr); 136018c5995bSMatthew G. Knepley ierr = DMPlexGetConeOrientation(dm, oldp, &ornt);CHKERRQ(ierr); 136118c5995bSMatthew G. Knepley ierr = DMPlexGetSupportSize(dm, oldp, &supportSize);CHKERRQ(ierr); 136218c5995bSMatthew G. Knepley ierr = DMPlexGetSupport(dm, oldp, &support);CHKERRQ(ierr); 136318c5995bSMatthew G. Knepley if (dep == 0) { 136418c5995bSMatthew G. Knepley const PetscInt hybedge = p + pMaxNew[dep+1] + numSplitPoints[dep+1] + numSplitPoints[dep]; 136518c5995bSMatthew G. Knepley 136618c5995bSMatthew G. Knepley /* Unsplit vertex */ 136718c5995bSMatthew G. Knepley ierr = DMPlexGetSupportSize(sdm, newp, &supportSizeNew);CHKERRQ(ierr); 136818c5995bSMatthew G. Knepley for (s = 0, q = 0; s < supportSize; ++s) { 13692582d50cSToby Isaac supportNew[q++] = DMPlexShiftPoint_Internal(support[s], depth, depthShift) /*support[s] + depthOffset[dep+1]*/; 137018c5995bSMatthew G. Knepley ierr = PetscFindInt(support[s], numSplitPoints[dep+1], splitPoints[dep+1], &e);CHKERRQ(ierr); 137118c5995bSMatthew G. Knepley if (e >= 0) { 137218c5995bSMatthew G. Knepley supportNew[q++] = e + pMaxNew[dep+1]; 137318c5995bSMatthew G. Knepley } 137418c5995bSMatthew G. Knepley } 137518c5995bSMatthew G. Knepley supportNew[q++] = hybedge; 137618c5995bSMatthew G. Knepley supportNew[q++] = hybedge; 137718c5995bSMatthew G. Knepley if (q != supportSizeNew) SETERRQ3(comm, PETSC_ERR_ARG_WRONG, "Support size %d != %d for vertex %d", q, supportSizeNew, newp); 137818c5995bSMatthew G. Knepley ierr = DMPlexSetSupport(sdm, newp, supportNew);CHKERRQ(ierr); 137918c5995bSMatthew G. Knepley /* Hybrid edge */ 138018c5995bSMatthew G. Knepley coneNew[0] = newp; 138118c5995bSMatthew G. Knepley coneNew[1] = newp; 138218c5995bSMatthew G. Knepley ierr = DMPlexSetCone(sdm, hybedge, coneNew);CHKERRQ(ierr); 138318c5995bSMatthew G. Knepley for (e = 0, qf = 0; e < supportSize; ++e) { 138418c5995bSMatthew G. Knepley PetscInt val, edge; 138518c5995bSMatthew G. Knepley 138618c5995bSMatthew G. Knepley ierr = DMLabelGetValue(label, support[e], &val);CHKERRQ(ierr); 138718c5995bSMatthew G. Knepley if (val == 1) { 138818c5995bSMatthew G. Knepley ierr = PetscFindInt(support[e], numSplitPoints[dep+1], splitPoints[dep+1], &edge);CHKERRQ(ierr); 138918c5995bSMatthew G. Knepley if (edge < 0) SETERRQ1(comm, PETSC_ERR_ARG_WRONG, "Edge %d is not a split edge", support[e]); 139018c5995bSMatthew G. Knepley supportNew[qf++] = edge + pMaxNew[dep+2] + numSplitPoints[dep+2]; 1391e1757548SMatthew G. Knepley } else if (val == (shift2 + 1)) { 1392e1757548SMatthew G. Knepley ierr = PetscFindInt(support[e], numUnsplitPoints[dep+1], unsplitPoints[dep+1], &edge);CHKERRQ(ierr); 1393e1757548SMatthew G. Knepley if (edge < 0) SETERRQ1(comm, PETSC_ERR_ARG_WRONG, "Edge %d is not a unsplit edge", support[e]); 1394e1757548SMatthew G. Knepley supportNew[qf++] = edge + pMaxNew[dep+2] + numSplitPoints[dep+2] + numSplitPoints[dep+1]; 139518c5995bSMatthew G. Knepley } 139618c5995bSMatthew G. Knepley } 139718c5995bSMatthew G. Knepley ierr = DMPlexSetSupport(sdm, hybedge, supportNew);CHKERRQ(ierr); 1398e1757548SMatthew G. Knepley } else if (dep == dim-2) { 1399e1757548SMatthew G. Knepley const PetscInt hybface = p + pMaxNew[dep+1] + numSplitPoints[dep+1] + numSplitPoints[dep]; 1400e1757548SMatthew G. Knepley 1401da1dd7e4SMatthew G. Knepley /* Unsplit edge: Faces into original edge, split face, and hybrid face twice */ 1402e1757548SMatthew G. Knepley for (f = 0, qf = 0; f < supportSize; ++f) { 1403e1757548SMatthew G. Knepley PetscInt val, face; 1404e1757548SMatthew G. Knepley 1405e1757548SMatthew G. Knepley ierr = DMLabelGetValue(label, support[f], &val);CHKERRQ(ierr); 1406e1757548SMatthew G. Knepley if (val == dim-1) { 1407e1757548SMatthew G. Knepley ierr = PetscFindInt(support[f], numSplitPoints[dep+1], splitPoints[dep+1], &face);CHKERRQ(ierr); 1408e1757548SMatthew G. Knepley if (face < 0) SETERRQ1(comm, PETSC_ERR_ARG_WRONG, "Face %d is not a split face", support[f]); 14092582d50cSToby Isaac supportNew[qf++] = DMPlexShiftPoint_Internal(support[f], depth, depthShift) /*support[f] + depthOffset[dep+1]*/; 1410e1757548SMatthew G. Knepley supportNew[qf++] = face + pMaxNew[dep+1]; 1411e1757548SMatthew G. Knepley } else { 14122582d50cSToby Isaac supportNew[qf++] = DMPlexShiftPoint_Internal(support[f], depth, depthShift) /*support[f] + depthOffset[dep+1]*/; 1413e1757548SMatthew G. Knepley } 1414e1757548SMatthew G. Knepley } 1415e1757548SMatthew G. Knepley supportNew[qf++] = hybface; 1416e1757548SMatthew G. Knepley supportNew[qf++] = hybface; 1417da1dd7e4SMatthew G. Knepley ierr = DMPlexGetSupportSize(sdm, newp, &supportSizeNew);CHKERRQ(ierr); 1418da1dd7e4SMatthew G. Knepley if (qf != supportSizeNew) SETERRQ3(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Support size for unsplit edge %d is %d != %d\n", newp, qf, supportSizeNew); 1419e1757548SMatthew G. Knepley ierr = DMPlexSetSupport(sdm, newp, supportNew);CHKERRQ(ierr); 1420e1757548SMatthew G. Knepley /* Add hybrid face */ 1421e1757548SMatthew G. Knepley coneNew[0] = newp; 1422212cc919SMatthew G. Knepley coneNew[1] = newp; 1423e1757548SMatthew G. Knepley ierr = PetscFindInt(cone[0], numUnsplitPoints[dep-1], unsplitPoints[dep-1], &v);CHKERRQ(ierr); 1424e1757548SMatthew G. Knepley if (v < 0) SETERRQ1(comm, PETSC_ERR_ARG_WRONG, "Vertex %d is not an unsplit vertex", cone[0]); 1425212cc919SMatthew G. Knepley coneNew[2] = v + pMaxNew[dep] + numSplitPoints[dep] + numSplitPoints[dep-1]; 1426e1757548SMatthew G. Knepley ierr = PetscFindInt(cone[1], numUnsplitPoints[dep-1], unsplitPoints[dep-1], &v);CHKERRQ(ierr); 1427e1757548SMatthew G. Knepley if (v < 0) SETERRQ1(comm, PETSC_ERR_ARG_WRONG, "Vertex %d is not an unsplit vertex", cone[1]); 1428e1757548SMatthew G. Knepley coneNew[3] = v + pMaxNew[dep] + numSplitPoints[dep] + numSplitPoints[dep-1]; 1429e1757548SMatthew G. Knepley ierr = DMPlexSetCone(sdm, hybface, coneNew);CHKERRQ(ierr); 1430da1dd7e4SMatthew G. Knepley for (f = 0, qf = 0; f < supportSize; ++f) { 1431da1dd7e4SMatthew G. Knepley PetscInt val, face; 1432da1dd7e4SMatthew G. Knepley 1433da1dd7e4SMatthew G. Knepley ierr = DMLabelGetValue(label, support[f], &val);CHKERRQ(ierr); 1434da1dd7e4SMatthew G. Knepley if (val == dim-1) { 1435da1dd7e4SMatthew G. Knepley ierr = PetscFindInt(support[f], numSplitPoints[dep+1], splitPoints[dep+1], &face);CHKERRQ(ierr); 1436da1dd7e4SMatthew G. Knepley supportNew[qf++] = face + pMaxNew[dep+2] + numSplitPoints[dep+2]; 1437da1dd7e4SMatthew G. Knepley } 1438da1dd7e4SMatthew G. Knepley } 1439da1dd7e4SMatthew G. Knepley ierr = DMPlexGetSupportSize(sdm, hybface, &supportSizeNew);CHKERRQ(ierr); 1440da1dd7e4SMatthew G. Knepley if (qf != supportSizeNew) SETERRQ3(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Support size for hybrid face %d is %d != %d\n", hybface, qf, supportSizeNew); 1441e1757548SMatthew G. Knepley ierr = DMPlexSetSupport(sdm, hybface, supportNew);CHKERRQ(ierr); 1442cd0c2139SMatthew G Knepley } 1443cd0c2139SMatthew G Knepley } 1444cd0c2139SMatthew G Knepley } 1445cd0c2139SMatthew G Knepley /* Step 6b: Replace split points in negative side cones */ 1446cd0c2139SMatthew G Knepley for (sp = 0; sp < numSP; ++sp) { 1447cd0c2139SMatthew G Knepley PetscInt dep = values[sp]; 1448cd0c2139SMatthew G Knepley IS pIS; 1449cd0c2139SMatthew G Knepley PetscInt numPoints; 1450cd0c2139SMatthew G Knepley const PetscInt *points; 1451cd0c2139SMatthew G Knepley 1452cd0c2139SMatthew G Knepley if (dep >= 0) continue; 1453cd0c2139SMatthew G Knepley ierr = DMLabelGetStratumIS(label, dep, &pIS);CHKERRQ(ierr); 1454cd0c2139SMatthew G Knepley if (!pIS) continue; 1455cd0c2139SMatthew G Knepley dep = -dep - shift; 1456cd0c2139SMatthew G Knepley ierr = ISGetLocalSize(pIS, &numPoints);CHKERRQ(ierr); 1457cd0c2139SMatthew G Knepley ierr = ISGetIndices(pIS, &points);CHKERRQ(ierr); 1458cd0c2139SMatthew G Knepley for (p = 0; p < numPoints; ++p) { 1459cd0c2139SMatthew G Knepley const PetscInt oldp = points[p]; 14602582d50cSToby Isaac const PetscInt newp = DMPlexShiftPoint_Internal(oldp, depth, depthShift) /*depthOffset[dep] + oldp*/; 1461cd0c2139SMatthew G Knepley const PetscInt *cone; 1462cd0c2139SMatthew G Knepley PetscInt coneSize, c; 146350cf782dSMatthew G. Knepley /* PetscBool replaced = PETSC_FALSE; */ 1464cd0c2139SMatthew G Knepley 1465cd0c2139SMatthew G Knepley /* Negative edge: replace split vertex */ 1466cd0c2139SMatthew G Knepley /* Negative cell: replace split face */ 1467cd0c2139SMatthew G Knepley ierr = DMPlexGetConeSize(sdm, newp, &coneSize);CHKERRQ(ierr); 1468cd0c2139SMatthew G Knepley ierr = DMPlexGetCone(sdm, newp, &cone);CHKERRQ(ierr); 1469cd0c2139SMatthew G Knepley for (c = 0; c < coneSize; ++c) { 1470e38fbfedSToby Isaac const PetscInt coldp = DMPlexShiftPointInverse_Internal(cone[c],depth,depthShift); 1471cd0c2139SMatthew G Knepley PetscInt csplitp, cp, val; 1472cd0c2139SMatthew G Knepley 1473cd0c2139SMatthew G Knepley ierr = DMLabelGetValue(label, coldp, &val);CHKERRQ(ierr); 1474cd0c2139SMatthew G Knepley if (val == dep-1) { 1475cd0c2139SMatthew G Knepley ierr = PetscFindInt(coldp, numSplitPoints[dep-1], splitPoints[dep-1], &cp);CHKERRQ(ierr); 1476cd0c2139SMatthew G Knepley if (cp < 0) SETERRQ2(comm, PETSC_ERR_ARG_WRONG, "Point %d is not a split point of dimension %d", oldp, dep-1); 1477cd0c2139SMatthew G Knepley csplitp = pMaxNew[dep-1] + cp; 1478cd0c2139SMatthew G Knepley ierr = DMPlexInsertCone(sdm, newp, c, csplitp);CHKERRQ(ierr); 147950cf782dSMatthew G. Knepley /* replaced = PETSC_TRUE; */ 1480cd0c2139SMatthew G Knepley } 1481cd0c2139SMatthew G Knepley } 14824a189a86SMatthew G. Knepley /* Cells with only a vertex or edge on the submesh have no replacement */ 14834a189a86SMatthew G. Knepley /* if (!replaced) SETERRQ1(comm, PETSC_ERR_ARG_WRONG, "The cone of point %d does not contain split points", oldp); */ 1484cd0c2139SMatthew G Knepley } 1485cd0c2139SMatthew G Knepley ierr = ISRestoreIndices(pIS, &points);CHKERRQ(ierr); 1486cd0c2139SMatthew G Knepley ierr = ISDestroy(&pIS);CHKERRQ(ierr); 1487cd0c2139SMatthew G Knepley } 1488fa8e8ae5SToby Isaac /* Step 7: Coordinates */ 1489cd0c2139SMatthew G Knepley ierr = DMPlexShiftCoordinates_Internal(dm, depthShift, sdm);CHKERRQ(ierr); 149069d8a9ceSMatthew G. Knepley ierr = DMGetCoordinateSection(sdm, &coordSection);CHKERRQ(ierr); 1491cd0c2139SMatthew G Knepley ierr = DMGetCoordinatesLocal(sdm, &coordinates);CHKERRQ(ierr); 1492cd0c2139SMatthew G Knepley ierr = VecGetArray(coordinates, &coords);CHKERRQ(ierr); 1493cd0c2139SMatthew G Knepley for (v = 0; v < (numSplitPoints ? numSplitPoints[0] : 0); ++v) { 14942582d50cSToby Isaac const PetscInt newp = DMPlexShiftPoint_Internal(splitPoints[0][v], depth, depthShift) /*depthOffset[0] + splitPoints[0][v]*/; 1495cd0c2139SMatthew G Knepley const PetscInt splitp = pMaxNew[0] + v; 1496cd0c2139SMatthew G Knepley PetscInt dof, off, soff, d; 1497cd0c2139SMatthew G Knepley 1498cd0c2139SMatthew G Knepley ierr = PetscSectionGetDof(coordSection, newp, &dof);CHKERRQ(ierr); 1499cd0c2139SMatthew G Knepley ierr = PetscSectionGetOffset(coordSection, newp, &off);CHKERRQ(ierr); 1500cd0c2139SMatthew G Knepley ierr = PetscSectionGetOffset(coordSection, splitp, &soff);CHKERRQ(ierr); 1501cd0c2139SMatthew G Knepley for (d = 0; d < dof; ++d) coords[soff+d] = coords[off+d]; 1502cd0c2139SMatthew G Knepley } 1503cd0c2139SMatthew G Knepley ierr = VecRestoreArray(coordinates, &coords);CHKERRQ(ierr); 1504fa8e8ae5SToby Isaac /* Step 8: SF, if I can figure this out we can split the mesh in parallel */ 1505cd0c2139SMatthew G Knepley ierr = DMPlexShiftSF_Internal(dm, depthShift, sdm);CHKERRQ(ierr); 1506fa8e8ae5SToby Isaac /* Step 9: Labels */ 1507cd0c2139SMatthew G Knepley ierr = DMPlexShiftLabels_Internal(dm, depthShift, sdm);CHKERRQ(ierr); 1508c58f1c22SToby Isaac ierr = DMGetNumLabels(sdm, &numLabels);CHKERRQ(ierr); 1509cd0c2139SMatthew G Knepley for (dep = 0; dep <= depth; ++dep) { 1510cd0c2139SMatthew G Knepley for (p = 0; p < numSplitPoints[dep]; ++p) { 15112582d50cSToby Isaac const PetscInt newp = DMPlexShiftPoint_Internal(splitPoints[dep][p], depth, depthShift) /*depthOffset[dep] + splitPoints[dep][p]*/; 1512cd0c2139SMatthew G Knepley const PetscInt splitp = pMaxNew[dep] + p; 1513cd0c2139SMatthew G Knepley PetscInt l; 1514cd0c2139SMatthew G Knepley 15157db7e0a7SMatthew G. Knepley if (splitLabel) { 15167db7e0a7SMatthew G. Knepley const PetscInt val = 100 + dep; 15177db7e0a7SMatthew G. Knepley 15187db7e0a7SMatthew G. Knepley ierr = DMLabelSetValue(splitLabel, newp, val);CHKERRQ(ierr); 15197db7e0a7SMatthew G. Knepley ierr = DMLabelSetValue(splitLabel, splitp, -val);CHKERRQ(ierr); 15207db7e0a7SMatthew G. Knepley } 1521cd0c2139SMatthew G Knepley for (l = 0; l < numLabels; ++l) { 1522cd0c2139SMatthew G Knepley DMLabel mlabel; 1523cd0c2139SMatthew G Knepley const char *lname; 1524cd0c2139SMatthew G Knepley PetscInt val; 15259a356370SMatthew G. Knepley PetscBool isDepth; 1526cd0c2139SMatthew G Knepley 1527c58f1c22SToby Isaac ierr = DMGetLabelName(sdm, l, &lname);CHKERRQ(ierr); 15289a356370SMatthew G. Knepley ierr = PetscStrcmp(lname, "depth", &isDepth);CHKERRQ(ierr); 15299a356370SMatthew G. Knepley if (isDepth) continue; 1530c58f1c22SToby Isaac ierr = DMGetLabel(sdm, lname, &mlabel);CHKERRQ(ierr); 1531cd0c2139SMatthew G Knepley ierr = DMLabelGetValue(mlabel, newp, &val);CHKERRQ(ierr); 1532cd0c2139SMatthew G Knepley if (val >= 0) { 1533cd0c2139SMatthew G Knepley ierr = DMLabelSetValue(mlabel, splitp, val);CHKERRQ(ierr); 1534cd0c2139SMatthew G Knepley } 1535cd0c2139SMatthew G Knepley } 1536cd0c2139SMatthew G Knepley } 1537cd0c2139SMatthew G Knepley } 1538cd0c2139SMatthew G Knepley for (sp = 0; sp < numSP; ++sp) { 1539cd0c2139SMatthew G Knepley const PetscInt dep = values[sp]; 1540cd0c2139SMatthew G Knepley 1541cd0c2139SMatthew G Knepley if ((dep < 0) || (dep > depth)) continue; 154218c5995bSMatthew G. Knepley if (splitIS[dep]) {ierr = ISRestoreIndices(splitIS[dep], &splitPoints[dep]);CHKERRQ(ierr);} 154318c5995bSMatthew G. Knepley ierr = ISDestroy(&splitIS[dep]);CHKERRQ(ierr); 154418c5995bSMatthew G. Knepley if (unsplitIS[dep]) {ierr = ISRestoreIndices(unsplitIS[dep], &unsplitPoints[dep]);CHKERRQ(ierr);} 154518c5995bSMatthew G. Knepley ierr = ISDestroy(&unsplitIS[dep]);CHKERRQ(ierr); 1546cd0c2139SMatthew G Knepley } 1547cd0c2139SMatthew G Knepley if (label) { 1548cd0c2139SMatthew G Knepley ierr = ISRestoreIndices(valueIS, &values);CHKERRQ(ierr); 1549cd0c2139SMatthew G Knepley ierr = ISDestroy(&valueIS);CHKERRQ(ierr); 1550cd0c2139SMatthew G Knepley } 15510d4d4d06SMatthew G. Knepley for (d = 0; d <= depth; ++d) { 15520d4d4d06SMatthew G. Knepley ierr = DMPlexGetDepthStratum(sdm, d, NULL, &pEnd);CHKERRQ(ierr); 155336dbac82SMatthew G. Knepley pMaxNew[d] = pEnd - numHybridPoints[d] - numHybridPointsOld[d]; 15540d4d4d06SMatthew G. Knepley } 15550e49e2e2SMatthew G. Knepley ierr = DMPlexSetHybridBounds(sdm, depth >= 0 ? pMaxNew[depth] : PETSC_DETERMINE, depth>1 ? pMaxNew[depth-1] : PETSC_DETERMINE, depth>2 ? pMaxNew[1] : PETSC_DETERMINE, depth >= 0 ? pMaxNew[0] : PETSC_DETERMINE);CHKERRQ(ierr); 1556dcbb62e8SMatthew G. Knepley ierr = PetscFree3(coneNew, coneONew, supportNew);CHKERRQ(ierr); 15572582d50cSToby Isaac ierr = PetscFree5(depthMax, depthEnd, depthShift, pMaxNew, numHybridPointsOld);CHKERRQ(ierr); 155818c5995bSMatthew G. Knepley ierr = PetscFree7(splitIS, unsplitIS, numSplitPoints, numUnsplitPoints, numHybridPoints, splitPoints, unsplitPoints);CHKERRQ(ierr); 1559cd0c2139SMatthew G Knepley PetscFunctionReturn(0); 1560cd0c2139SMatthew G Knepley } 1561cd0c2139SMatthew G Knepley 1562cd0c2139SMatthew G Knepley /*@C 1563cd0c2139SMatthew G Knepley DMPlexConstructCohesiveCells - Construct cohesive cells which split the face along an internal interface 1564cd0c2139SMatthew G Knepley 1565cd0c2139SMatthew G Knepley Collective on dm 1566cd0c2139SMatthew G Knepley 1567cd0c2139SMatthew G Knepley Input Parameters: 1568cd0c2139SMatthew G Knepley + dm - The original DM 156953156dfcSMatthew G. Knepley - label - The label specifying the boundary faces (this could be auto-generated) 1570cd0c2139SMatthew G Knepley 1571cd0c2139SMatthew G Knepley Output Parameters: 15727db7e0a7SMatthew G. Knepley + splitLabel - The label containing the split points, or NULL if no output is desired 1573cd0c2139SMatthew G Knepley - dmSplit - The new DM 1574cd0c2139SMatthew G Knepley 1575cd0c2139SMatthew G Knepley Level: developer 1576cd0c2139SMatthew G Knepley 15772be2b188SMatthew G Knepley .seealso: DMCreate(), DMPlexLabelCohesiveComplete() 1578cd0c2139SMatthew G Knepley @*/ 15797db7e0a7SMatthew G. Knepley PetscErrorCode DMPlexConstructCohesiveCells(DM dm, DMLabel label, DMLabel splitLabel, DM *dmSplit) 1580cd0c2139SMatthew G Knepley { 1581cd0c2139SMatthew G Knepley DM sdm; 1582cd0c2139SMatthew G Knepley PetscInt dim; 1583cd0c2139SMatthew G Knepley PetscErrorCode ierr; 1584cd0c2139SMatthew G Knepley 1585cd0c2139SMatthew G Knepley PetscFunctionBegin; 1586cd0c2139SMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 158753156dfcSMatthew G. Knepley PetscValidPointer(dmSplit, 3); 1588cd0c2139SMatthew G Knepley ierr = DMCreate(PetscObjectComm((PetscObject)dm), &sdm);CHKERRQ(ierr); 1589cd0c2139SMatthew G Knepley ierr = DMSetType(sdm, DMPLEX);CHKERRQ(ierr); 1590c73cfb54SMatthew G. Knepley ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr); 1591c73cfb54SMatthew G. Knepley ierr = DMSetDimension(sdm, dim);CHKERRQ(ierr); 1592cd0c2139SMatthew G Knepley switch (dim) { 1593cd0c2139SMatthew G Knepley case 2: 1594cd0c2139SMatthew G Knepley case 3: 15957db7e0a7SMatthew G. Knepley ierr = DMPlexConstructCohesiveCells_Internal(dm, label, splitLabel, sdm);CHKERRQ(ierr); 1596cd0c2139SMatthew G Knepley break; 1597cd0c2139SMatthew G Knepley default: 1598cd0c2139SMatthew G Knepley SETERRQ1(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Cannot construct cohesive cells for dimension %d", dim); 1599cd0c2139SMatthew G Knepley } 1600cd0c2139SMatthew G Knepley *dmSplit = sdm; 1601cd0c2139SMatthew G Knepley PetscFunctionReturn(0); 1602cd0c2139SMatthew G Knepley } 1603cd0c2139SMatthew G Knepley 16040f66a230SMatthew G. Knepley /* Returns the side of the surface for a given cell with a face on the surface */ 16050f66a230SMatthew G. Knepley static PetscErrorCode GetSurfaceSide_Static(DM dm, DM subdm, PetscInt numSubpoints, const PetscInt *subpoints, PetscInt cell, PetscInt face, PetscBool *pos) 16060f66a230SMatthew G. Knepley { 16070f66a230SMatthew G. Knepley const PetscInt *cone, *ornt; 16080f66a230SMatthew G. Knepley PetscInt dim, coneSize, c; 16090f66a230SMatthew G. Knepley PetscErrorCode ierr; 16100f66a230SMatthew G. Knepley 16110f66a230SMatthew G. Knepley PetscFunctionBegin; 16120f66a230SMatthew G. Knepley *pos = PETSC_TRUE; 1613c73cfb54SMatthew G. Knepley ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr); 16140f66a230SMatthew G. Knepley ierr = DMPlexGetConeSize(dm, cell, &coneSize);CHKERRQ(ierr); 16150f66a230SMatthew G. Knepley ierr = DMPlexGetCone(dm, cell, &cone);CHKERRQ(ierr); 16160f66a230SMatthew G. Knepley ierr = DMPlexGetConeOrientation(dm, cell, &ornt);CHKERRQ(ierr); 16170f66a230SMatthew G. Knepley for (c = 0; c < coneSize; ++c) { 16180f66a230SMatthew G. Knepley if (cone[c] == face) { 16190f66a230SMatthew G. Knepley PetscInt o = ornt[c]; 16200f66a230SMatthew G. Knepley 16210f66a230SMatthew G. Knepley if (subdm) { 16220f66a230SMatthew G. Knepley const PetscInt *subcone, *subornt; 16230f66a230SMatthew G. Knepley PetscInt subpoint, subface, subconeSize, sc; 16240f66a230SMatthew G. Knepley 16250f66a230SMatthew G. Knepley ierr = PetscFindInt(cell, numSubpoints, subpoints, &subpoint);CHKERRQ(ierr); 16260f66a230SMatthew G. Knepley ierr = PetscFindInt(face, numSubpoints, subpoints, &subface);CHKERRQ(ierr); 16270f66a230SMatthew G. Knepley ierr = DMPlexGetConeSize(subdm, subpoint, &subconeSize);CHKERRQ(ierr); 16280f66a230SMatthew G. Knepley ierr = DMPlexGetCone(subdm, subpoint, &subcone);CHKERRQ(ierr); 16290f66a230SMatthew G. Knepley ierr = DMPlexGetConeOrientation(subdm, subpoint, &subornt);CHKERRQ(ierr); 16300f66a230SMatthew G. Knepley for (sc = 0; sc < subconeSize; ++sc) { 16310f66a230SMatthew G. Knepley if (subcone[sc] == subface) { 16320f66a230SMatthew G. Knepley o = subornt[0]; 16330f66a230SMatthew G. Knepley break; 16340f66a230SMatthew G. Knepley } 16350f66a230SMatthew G. Knepley } 16360f66a230SMatthew G. Knepley if (sc >= subconeSize) SETERRQ4(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Could not find subpoint %d (%d) in cone for subpoint %d (%d)", subface, face, subpoint, cell); 16370f66a230SMatthew G. Knepley } 16380f66a230SMatthew G. Knepley if (o >= 0) *pos = PETSC_TRUE; 16390f66a230SMatthew G. Knepley else *pos = PETSC_FALSE; 16400f66a230SMatthew G. Knepley break; 16410f66a230SMatthew G. Knepley } 16420f66a230SMatthew G. Knepley } 16430f66a230SMatthew G. Knepley if (c == coneSize) SETERRQ2(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Cell %d in split face %d support does not have it in the cone", cell, face); 16440f66a230SMatthew G. Knepley PetscFunctionReturn(0); 16450f66a230SMatthew G. Knepley } 16460f66a230SMatthew G. Knepley 1647cd0c2139SMatthew G Knepley /*@ 16480f66a230SMatthew G. Knepley DMPlexLabelCohesiveComplete - Starting with a label marking points on an internal surface, we add all other mesh pieces 1649cd0c2139SMatthew G Knepley to complete the surface 1650cd0c2139SMatthew G Knepley 1651cd0c2139SMatthew G Knepley Input Parameters: 1652cd0c2139SMatthew G Knepley + dm - The DM 16530f66a230SMatthew G. Knepley . label - A DMLabel marking the surface 16540f66a230SMatthew G. Knepley . blabel - A DMLabel marking the vertices on the boundary which will not be duplicated, or NULL to find them automatically 1655bb55d314SMatthew G. Knepley . flip - Flag to flip the submesh normal and replace points on the other side 165647946fd8SMatthew G. Knepley - subdm - The subDM associated with the label, or NULL 1657cd0c2139SMatthew G Knepley 1658cd0c2139SMatthew G Knepley Output Parameter: 1659cd0c2139SMatthew G Knepley . label - A DMLabel marking all surface points 1660cd0c2139SMatthew G Knepley 16610f66a230SMatthew G. Knepley Note: The vertices in blabel are called "unsplit" in the terminology from hybrid cell creation. 16620f66a230SMatthew G. Knepley 1663cd0c2139SMatthew G Knepley Level: developer 1664cd0c2139SMatthew G Knepley 16652be2b188SMatthew G Knepley .seealso: DMPlexConstructCohesiveCells(), DMPlexLabelComplete() 1666cd0c2139SMatthew G Knepley @*/ 16670f66a230SMatthew G. Knepley PetscErrorCode DMPlexLabelCohesiveComplete(DM dm, DMLabel label, DMLabel blabel, PetscBool flip, DM subdm) 1668cd0c2139SMatthew G Knepley { 1669d90583fdSMatthew G. Knepley DMLabel depthLabel; 16708630cb1aSMatthew G. Knepley IS dimIS, subpointIS = NULL, facePosIS, faceNegIS, crossEdgeIS = NULL; 167147946fd8SMatthew G. Knepley const PetscInt *points, *subpoints; 1672bb55d314SMatthew G. Knepley const PetscInt rev = flip ? -1 : 1; 1673370472baSMatthew G. Knepley PetscInt *pMax; 1674370472baSMatthew G. Knepley PetscInt shift = 100, shift2 = 200, dim, depth, pSize, dep, cStart, cEnd, cMax, fStart, fEnd, vStart, vEnd, numPoints, numSubpoints, p, val; 1675cd0c2139SMatthew G Knepley PetscErrorCode ierr; 1676cd0c2139SMatthew G Knepley 1677cd0c2139SMatthew G Knepley PetscFunctionBegin; 1678370472baSMatthew G. Knepley ierr = DMPlexGetDepth(dm, &depth);CHKERRQ(ierr); 1679370472baSMatthew G. Knepley ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr); 1680370472baSMatthew G. Knepley pSize = PetscMax(depth, dim) + 1; 1681370472baSMatthew G. Knepley ierr = PetscMalloc1(pSize,&pMax);CHKERRQ(ierr); 1682370472baSMatthew G. Knepley ierr = DMPlexGetHybridBounds(dm, depth >= 0 ? &pMax[depth] : NULL, depth>1 ? &pMax[depth-1] : NULL, depth>2 ? &pMax[1] : NULL, &pMax[0]);CHKERRQ(ierr); 1683d90583fdSMatthew G. Knepley ierr = DMPlexGetDepthLabel(dm, &depthLabel);CHKERRQ(ierr); 1684c73cfb54SMatthew G. Knepley ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr); 168547946fd8SMatthew G. Knepley if (subdm) { 168647946fd8SMatthew G. Knepley ierr = DMPlexCreateSubpointIS(subdm, &subpointIS);CHKERRQ(ierr); 168747946fd8SMatthew G. Knepley if (subpointIS) { 168847946fd8SMatthew G. Knepley ierr = ISGetLocalSize(subpointIS, &numSubpoints);CHKERRQ(ierr); 168947946fd8SMatthew G. Knepley ierr = ISGetIndices(subpointIS, &subpoints);CHKERRQ(ierr); 169047946fd8SMatthew G. Knepley } 169147946fd8SMatthew G. Knepley } 1692d7c8f101SMatthew G. Knepley /* Mark cell on the fault, and its faces which touch the fault: cell orientation for face gives the side of the fault */ 1693cd0c2139SMatthew G Knepley ierr = DMLabelGetStratumIS(label, dim-1, &dimIS);CHKERRQ(ierr); 1694dc86033cSMatthew G. Knepley if (!dimIS) { 1695dc86033cSMatthew G. Knepley ierr = PetscFree(pMax);CHKERRQ(ierr); 16968630cb1aSMatthew G. Knepley ierr = ISDestroy(&subpointIS);CHKERRQ(ierr); 1697dc86033cSMatthew G. Knepley PetscFunctionReturn(0); 1698dc86033cSMatthew G. Knepley } 1699cd0c2139SMatthew G Knepley ierr = ISGetLocalSize(dimIS, &numPoints);CHKERRQ(ierr); 1700cd0c2139SMatthew G Knepley ierr = ISGetIndices(dimIS, &points);CHKERRQ(ierr); 1701d7c8f101SMatthew G. Knepley for (p = 0; p < numPoints; ++p) { /* Loop over fault faces */ 1702cd0c2139SMatthew G Knepley const PetscInt *support; 1703cd0c2139SMatthew G Knepley PetscInt supportSize, s; 1704cd0c2139SMatthew G Knepley 1705cd0c2139SMatthew G Knepley ierr = DMPlexGetSupportSize(dm, points[p], &supportSize);CHKERRQ(ierr); 1706c4419245SMatthew G. Knepley #if 0 1707c4419245SMatthew G. Knepley if (supportSize != 2) { 1708c4419245SMatthew G. Knepley const PetscInt *lp; 1709c4419245SMatthew G. Knepley PetscInt Nlp, pind; 1710c4419245SMatthew G. Knepley 1711c4419245SMatthew G. Knepley /* Check that for a cell with a single support face, that face is in the SF */ 1712c4419245SMatthew G. Knepley /* THis check only works for the remote side. We would need root side information */ 1713c4419245SMatthew G. Knepley ierr = PetscSFGetGraph(dm->sf, NULL, &Nlp, &lp, NULL);CHKERRQ(ierr); 1714c4419245SMatthew G. Knepley ierr = PetscFindInt(points[p], Nlp, lp, &pind);CHKERRQ(ierr); 1715c4419245SMatthew G. Knepley if (pind < 0) SETERRQ2(PetscObjectComm((PetscObject) dm), PETSC_ERR_ARG_WRONG, "Split face %d has %d != 2 supports, and the face is not shared with another process", points[p], supportSize); 1716c4419245SMatthew G. Knepley } 1717c4419245SMatthew G. Knepley #endif 1718cd0c2139SMatthew G Knepley ierr = DMPlexGetSupport(dm, points[p], &support);CHKERRQ(ierr); 1719cd0c2139SMatthew G Knepley for (s = 0; s < supportSize; ++s) { 17200f66a230SMatthew G. Knepley const PetscInt *cone; 1721cd0c2139SMatthew G Knepley PetscInt coneSize, c; 17220f66a230SMatthew G. Knepley PetscBool pos; 1723cd0c2139SMatthew G Knepley 17240f66a230SMatthew G. Knepley ierr = GetSurfaceSide_Static(dm, subdm, numSubpoints, subpoints, support[s], points[p], &pos);CHKERRQ(ierr); 17250f66a230SMatthew G. Knepley if (pos) {ierr = DMLabelSetValue(label, support[s], rev*(shift+dim));CHKERRQ(ierr);} 17260f66a230SMatthew G. Knepley else {ierr = DMLabelSetValue(label, support[s], -rev*(shift+dim));CHKERRQ(ierr);} 17270f66a230SMatthew G. Knepley if (rev < 0) pos = !pos ? PETSC_TRUE : PETSC_FALSE; 17280f66a230SMatthew G. Knepley /* Put faces touching the fault in the label */ 1729cd0c2139SMatthew G Knepley ierr = DMPlexGetConeSize(dm, support[s], &coneSize);CHKERRQ(ierr); 1730cd0c2139SMatthew G Knepley ierr = DMPlexGetCone(dm, support[s], &cone);CHKERRQ(ierr); 1731cd0c2139SMatthew G Knepley for (c = 0; c < coneSize; ++c) { 1732cd0c2139SMatthew G Knepley const PetscInt point = cone[c]; 1733cd0c2139SMatthew G Knepley 1734cd0c2139SMatthew G Knepley ierr = DMLabelGetValue(label, point, &val);CHKERRQ(ierr); 1735cd0c2139SMatthew G Knepley if (val == -1) { 1736cd0c2139SMatthew G Knepley PetscInt *closure = NULL; 1737cd0c2139SMatthew G Knepley PetscInt closureSize, cl; 1738cd0c2139SMatthew G Knepley 1739cd0c2139SMatthew G Knepley ierr = DMPlexGetTransitiveClosure(dm, point, PETSC_TRUE, &closureSize, &closure);CHKERRQ(ierr); 1740cd0c2139SMatthew G Knepley for (cl = 0; cl < closureSize*2; cl += 2) { 1741cd0c2139SMatthew G Knepley const PetscInt clp = closure[cl]; 1742a0541d8aSMatthew G. Knepley PetscInt bval = -1; 1743cd0c2139SMatthew G Knepley 1744cd0c2139SMatthew G Knepley ierr = DMLabelGetValue(label, clp, &val);CHKERRQ(ierr); 1745a0541d8aSMatthew G. Knepley if (blabel) {ierr = DMLabelGetValue(blabel, clp, &bval);CHKERRQ(ierr);} 1746a0541d8aSMatthew G. Knepley if ((val >= 0) && (val < dim-1) && (bval < 0)) { 1747cd0c2139SMatthew G Knepley ierr = DMLabelSetValue(label, point, pos == PETSC_TRUE ? shift+dim-1 : -(shift+dim-1));CHKERRQ(ierr); 1748cd0c2139SMatthew G Knepley break; 1749cd0c2139SMatthew G Knepley } 1750cd0c2139SMatthew G Knepley } 1751cd0c2139SMatthew G Knepley ierr = DMPlexRestoreTransitiveClosure(dm, point, PETSC_TRUE, &closureSize, &closure);CHKERRQ(ierr); 1752cd0c2139SMatthew G Knepley } 1753cd0c2139SMatthew G Knepley } 1754cd0c2139SMatthew G Knepley } 1755cd0c2139SMatthew G Knepley } 17560f66a230SMatthew G. Knepley ierr = ISRestoreIndices(dimIS, &points);CHKERRQ(ierr); 17570f66a230SMatthew G. Knepley ierr = ISDestroy(&dimIS);CHKERRQ(ierr); 175847946fd8SMatthew G. Knepley if (subpointIS) {ierr = ISRestoreIndices(subpointIS, &subpoints);CHKERRQ(ierr);} 175947946fd8SMatthew G. Knepley ierr = ISDestroy(&subpointIS);CHKERRQ(ierr); 1760a0541d8aSMatthew G. Knepley /* Mark boundary points as unsplit */ 176186200784SMatthew G. Knepley if (blabel) { 1762a0541d8aSMatthew G. Knepley ierr = DMLabelGetStratumIS(blabel, 1, &dimIS);CHKERRQ(ierr); 1763a0541d8aSMatthew G. Knepley ierr = ISGetLocalSize(dimIS, &numPoints);CHKERRQ(ierr); 1764a0541d8aSMatthew G. Knepley ierr = ISGetIndices(dimIS, &points);CHKERRQ(ierr); 1765a0541d8aSMatthew G. Knepley for (p = 0; p < numPoints; ++p) { 1766a0541d8aSMatthew G. Knepley const PetscInt point = points[p]; 1767a0541d8aSMatthew G. Knepley PetscInt val, bval; 1768a0541d8aSMatthew G. Knepley 1769a0541d8aSMatthew G. Knepley ierr = DMLabelGetValue(blabel, point, &bval);CHKERRQ(ierr); 1770a0541d8aSMatthew G. Knepley if (bval >= 0) { 1771f7019248SMatthew G. Knepley ierr = DMLabelGetValue(label, point, &val);CHKERRQ(ierr); 1772f7019248SMatthew G. Knepley if ((val < 0) || (val > dim)) { 1773f7019248SMatthew G. Knepley /* This could be a point added from splitting a vertex on an adjacent fault, otherwise its just wrong */ 1774f7019248SMatthew G. Knepley ierr = DMLabelClearValue(blabel, point, bval);CHKERRQ(ierr); 1775f7019248SMatthew G. Knepley } 1776f7019248SMatthew G. Knepley } 1777f7019248SMatthew G. Knepley } 1778f7019248SMatthew G. Knepley for (p = 0; p < numPoints; ++p) { 1779f7019248SMatthew G. Knepley const PetscInt point = points[p]; 1780f7019248SMatthew G. Knepley PetscInt val, bval; 1781f7019248SMatthew G. Knepley 1782f7019248SMatthew G. Knepley ierr = DMLabelGetValue(blabel, point, &bval);CHKERRQ(ierr); 1783f7019248SMatthew G. Knepley if (bval >= 0) { 178486200784SMatthew G. Knepley const PetscInt *cone, *support; 178586200784SMatthew G. Knepley PetscInt coneSize, supportSize, s, valA, valB, valE; 178686200784SMatthew G. Knepley 1787a0541d8aSMatthew G. Knepley /* Mark as unsplit */ 1788a0541d8aSMatthew G. Knepley ierr = DMLabelGetValue(label, point, &val);CHKERRQ(ierr); 1789a0541d8aSMatthew G. Knepley if ((val < 0) || (val > dim)) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Point %d has label value %d, should be part of the fault", point, val); 1790a0541d8aSMatthew G. Knepley ierr = DMLabelClearValue(label, point, val);CHKERRQ(ierr); 1791a0541d8aSMatthew G. Knepley ierr = DMLabelSetValue(label, point, shift2+val);CHKERRQ(ierr); 17922c06a818SMatthew G. Knepley /* Check for cross-edge 17932c06a818SMatthew G. Knepley A cross-edge has endpoints which are both on the boundary of the surface, but the edge itself is not. */ 179486200784SMatthew G. Knepley if (val != 0) continue; 179586200784SMatthew G. Knepley ierr = DMPlexGetSupport(dm, point, &support);CHKERRQ(ierr); 179686200784SMatthew G. Knepley ierr = DMPlexGetSupportSize(dm, point, &supportSize);CHKERRQ(ierr); 179786200784SMatthew G. Knepley for (s = 0; s < supportSize; ++s) { 179886200784SMatthew G. Knepley ierr = DMPlexGetCone(dm, support[s], &cone);CHKERRQ(ierr); 179986200784SMatthew G. Knepley ierr = DMPlexGetConeSize(dm, support[s], &coneSize);CHKERRQ(ierr); 180086200784SMatthew G. Knepley if (coneSize != 2) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Edge %D has %D vertices != 2", support[s], coneSize); 180186200784SMatthew G. Knepley ierr = DMLabelGetValue(blabel, cone[0], &valA);CHKERRQ(ierr); 180286200784SMatthew G. Knepley ierr = DMLabelGetValue(blabel, cone[1], &valB);CHKERRQ(ierr); 180386200784SMatthew G. Knepley ierr = DMLabelGetValue(blabel, support[s], &valE);CHKERRQ(ierr); 180409816f77SMatthew G. Knepley if ((valE < 0) && (valA >= 0) && (valB >= 0) && (cone[0] != cone[1])) {ierr = DMLabelSetValue(blabel, support[s], 2);CHKERRQ(ierr);} 180586200784SMatthew G. Knepley } 1806a0541d8aSMatthew G. Knepley } 1807a0541d8aSMatthew G. Knepley } 1808a0541d8aSMatthew G. Knepley ierr = ISRestoreIndices(dimIS, &points);CHKERRQ(ierr); 1809a0541d8aSMatthew G. Knepley ierr = ISDestroy(&dimIS);CHKERRQ(ierr); 1810a0541d8aSMatthew G. Knepley } 1811cd0c2139SMatthew G Knepley /* Search for other cells/faces/edges connected to the fault by a vertex */ 1812c4d480a2SMatthew G. Knepley ierr = DMPlexGetDepthStratum(dm, 0, &vStart, &vEnd);CHKERRQ(ierr); 1813cd0c2139SMatthew G Knepley ierr = DMPlexGetHeightStratum(dm, 0, &cStart, &cEnd);CHKERRQ(ierr); 1814d24f5ce5SMatthew G. Knepley ierr = DMPlexGetHybridBounds(dm, &cMax, NULL, NULL, NULL);CHKERRQ(ierr); 1815d24f5ce5SMatthew G. Knepley cMax = cMax < 0 ? cEnd : cMax; 18160f66a230SMatthew G. Knepley ierr = DMPlexGetHeightStratum(dm, 1, &fStart, &fEnd);CHKERRQ(ierr); 1817cd0c2139SMatthew G Knepley ierr = DMLabelGetStratumIS(label, 0, &dimIS);CHKERRQ(ierr); 181886200784SMatthew G. Knepley if (blabel) {ierr = DMLabelGetStratumIS(blabel, 2, &crossEdgeIS);CHKERRQ(ierr);} 181986200784SMatthew G. Knepley if (dimIS && crossEdgeIS) { 182086200784SMatthew G. Knepley IS vertIS = dimIS; 182186200784SMatthew G. Knepley 182286200784SMatthew G. Knepley ierr = ISExpand(vertIS, crossEdgeIS, &dimIS);CHKERRQ(ierr); 182386200784SMatthew G. Knepley ierr = ISDestroy(&crossEdgeIS);CHKERRQ(ierr); 182486200784SMatthew G. Knepley ierr = ISDestroy(&vertIS);CHKERRQ(ierr); 182586200784SMatthew G. Knepley } 1826dc86033cSMatthew G. Knepley if (!dimIS) { 1827dc86033cSMatthew G. Knepley ierr = PetscFree(pMax);CHKERRQ(ierr); 1828dc86033cSMatthew G. Knepley PetscFunctionReturn(0); 1829dc86033cSMatthew G. Knepley } 1830cd0c2139SMatthew G Knepley ierr = ISGetLocalSize(dimIS, &numPoints);CHKERRQ(ierr); 1831cd0c2139SMatthew G Knepley ierr = ISGetIndices(dimIS, &points);CHKERRQ(ierr); 1832d7c8f101SMatthew G. Knepley for (p = 0; p < numPoints; ++p) { /* Loop over fault vertices */ 1833cd0c2139SMatthew G Knepley PetscInt *star = NULL; 183486200784SMatthew G. Knepley PetscInt starSize, s; 1835cd0c2139SMatthew G Knepley PetscInt again = 1; /* 0: Finished 1: Keep iterating after a change 2: No change */ 1836cd0c2139SMatthew G Knepley 1837d4622b2cSMatthew G. Knepley /* All points connected to the fault are inside a cell, so at the top level we will only check cells */ 1838cd0c2139SMatthew G Knepley ierr = DMPlexGetTransitiveClosure(dm, points[p], PETSC_FALSE, &starSize, &star);CHKERRQ(ierr); 1839cd0c2139SMatthew G Knepley while (again) { 1840cd0c2139SMatthew G Knepley if (again > 1) SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_PLIB, "Could not classify all cells connected to the fault"); 1841cd0c2139SMatthew G Knepley again = 0; 1842cd0c2139SMatthew G Knepley for (s = 0; s < starSize*2; s += 2) { 1843cd0c2139SMatthew G Knepley const PetscInt point = star[s]; 1844cd0c2139SMatthew G Knepley const PetscInt *cone; 1845cd0c2139SMatthew G Knepley PetscInt coneSize, c; 1846cd0c2139SMatthew G Knepley 1847d24f5ce5SMatthew G. Knepley if ((point < cStart) || (point >= cMax)) continue; 1848cd0c2139SMatthew G Knepley ierr = DMLabelGetValue(label, point, &val);CHKERRQ(ierr); 1849cd0c2139SMatthew G Knepley if (val != -1) continue; 1850d4622b2cSMatthew G. Knepley again = again == 1 ? 1 : 2; 1851cd0c2139SMatthew G Knepley ierr = DMPlexGetConeSize(dm, point, &coneSize);CHKERRQ(ierr); 1852cd0c2139SMatthew G Knepley ierr = DMPlexGetCone(dm, point, &cone);CHKERRQ(ierr); 1853cd0c2139SMatthew G Knepley for (c = 0; c < coneSize; ++c) { 1854cd0c2139SMatthew G Knepley ierr = DMLabelGetValue(label, cone[c], &val);CHKERRQ(ierr); 1855cd0c2139SMatthew G Knepley if (val != -1) { 1856d7c8f101SMatthew G. Knepley const PetscInt *ccone; 1857166d9d0cSMatthew G. Knepley PetscInt cconeSize, cc, side; 1858d7c8f101SMatthew G. Knepley 1859db8edaafSMatthew G. Knepley if (PetscAbs(val) < shift) SETERRQ3(PetscObjectComm((PetscObject)dm), PETSC_ERR_PLIB, "Face %d on cell %d has an invalid label %d", cone[c], point, val); 186037a6de01SMatthew G. Knepley if (val > 0) side = 1; 186137a6de01SMatthew G. Knepley else side = -1; 186237a6de01SMatthew G. Knepley ierr = DMLabelSetValue(label, point, side*(shift+dim));CHKERRQ(ierr); 1863d7c8f101SMatthew G. Knepley /* Mark cell faces which touch the fault */ 1864d7c8f101SMatthew G. Knepley ierr = DMPlexGetConeSize(dm, point, &cconeSize);CHKERRQ(ierr); 1865d7c8f101SMatthew G. Knepley ierr = DMPlexGetCone(dm, point, &ccone);CHKERRQ(ierr); 1866d7c8f101SMatthew G. Knepley for (cc = 0; cc < cconeSize; ++cc) { 1867d7c8f101SMatthew G. Knepley PetscInt *closure = NULL; 1868d7c8f101SMatthew G. Knepley PetscInt closureSize, cl; 1869d7c8f101SMatthew G. Knepley 1870166d9d0cSMatthew G. Knepley ierr = DMLabelGetValue(label, ccone[cc], &val);CHKERRQ(ierr); 1871166d9d0cSMatthew G. Knepley if (val != -1) continue; 1872d7c8f101SMatthew G. Knepley ierr = DMPlexGetTransitiveClosure(dm, ccone[cc], PETSC_TRUE, &closureSize, &closure);CHKERRQ(ierr); 1873d4622b2cSMatthew G. Knepley for (cl = 0; cl < closureSize*2; cl += 2) { 1874d7c8f101SMatthew G. Knepley const PetscInt clp = closure[cl]; 1875d7c8f101SMatthew G. Knepley 1876d7c8f101SMatthew G. Knepley ierr = DMLabelGetValue(label, clp, &val);CHKERRQ(ierr); 1877d7c8f101SMatthew G. Knepley if (val == -1) continue; 1878d7c8f101SMatthew G. Knepley ierr = DMLabelSetValue(label, ccone[cc], side*(shift+dim-1));CHKERRQ(ierr); 187937a6de01SMatthew G. Knepley break; 188037a6de01SMatthew G. Knepley } 1881d7c8f101SMatthew G. Knepley ierr = DMPlexRestoreTransitiveClosure(dm, ccone[cc], PETSC_TRUE, &closureSize, &closure);CHKERRQ(ierr); 1882cd0c2139SMatthew G Knepley } 1883cd0c2139SMatthew G Knepley again = 1; 1884cd0c2139SMatthew G Knepley break; 1885cd0c2139SMatthew G Knepley } 1886cd0c2139SMatthew G Knepley } 1887cd0c2139SMatthew G Knepley } 1888cd0c2139SMatthew G Knepley } 1889cd0c2139SMatthew G Knepley /* Classify the rest by cell membership */ 1890cd0c2139SMatthew G Knepley for (s = 0; s < starSize*2; s += 2) { 1891cd0c2139SMatthew G Knepley const PetscInt point = star[s]; 1892cd0c2139SMatthew G Knepley 1893cd0c2139SMatthew G Knepley ierr = DMLabelGetValue(label, point, &val);CHKERRQ(ierr); 1894cd0c2139SMatthew G Knepley if (val == -1) { 1895cd0c2139SMatthew G Knepley PetscInt *sstar = NULL; 1896cd0c2139SMatthew G Knepley PetscInt sstarSize, ss; 1897cd0c2139SMatthew G Knepley PetscBool marked = PETSC_FALSE; 1898cd0c2139SMatthew G Knepley 1899cd0c2139SMatthew G Knepley ierr = DMPlexGetTransitiveClosure(dm, point, PETSC_FALSE, &sstarSize, &sstar);CHKERRQ(ierr); 1900cd0c2139SMatthew G Knepley for (ss = 0; ss < sstarSize*2; ss += 2) { 1901cd0c2139SMatthew G Knepley const PetscInt spoint = sstar[ss]; 1902cd0c2139SMatthew G Knepley 1903d24f5ce5SMatthew G. Knepley if ((spoint < cStart) || (spoint >= cMax)) continue; 1904cd0c2139SMatthew G Knepley ierr = DMLabelGetValue(label, spoint, &val);CHKERRQ(ierr); 1905cd0c2139SMatthew G Knepley if (val == -1) SETERRQ2(PetscObjectComm((PetscObject)dm), PETSC_ERR_PLIB, "Cell %d in star of %d does not have a valid label", spoint, point); 1906d90583fdSMatthew G. Knepley ierr = DMLabelGetValue(depthLabel, point, &dep);CHKERRQ(ierr); 1907cd0c2139SMatthew G Knepley if (val > 0) { 1908cd0c2139SMatthew G Knepley ierr = DMLabelSetValue(label, point, shift+dep);CHKERRQ(ierr); 1909cd0c2139SMatthew G Knepley } else { 1910cd0c2139SMatthew G Knepley ierr = DMLabelSetValue(label, point, -(shift+dep));CHKERRQ(ierr); 1911cd0c2139SMatthew G Knepley } 1912cd0c2139SMatthew G Knepley marked = PETSC_TRUE; 1913cd0c2139SMatthew G Knepley break; 1914cd0c2139SMatthew G Knepley } 1915cd0c2139SMatthew G Knepley ierr = DMPlexRestoreTransitiveClosure(dm, point, PETSC_FALSE, &sstarSize, &sstar);CHKERRQ(ierr); 1916370472baSMatthew G. Knepley ierr = DMLabelGetValue(depthLabel, point, &dep);CHKERRQ(ierr); 1917370472baSMatthew G. Knepley if (point < pMax[dep] && !marked) SETERRQ1(PetscObjectComm((PetscObject)dm), PETSC_ERR_PLIB, "Point %d could not be classified", point); 1918cd0c2139SMatthew G Knepley } 1919cd0c2139SMatthew G Knepley } 1920cd0c2139SMatthew G Knepley ierr = DMPlexRestoreTransitiveClosure(dm, points[p], PETSC_FALSE, &starSize, &star);CHKERRQ(ierr); 1921cd0c2139SMatthew G Knepley } 1922cd0c2139SMatthew G Knepley ierr = ISRestoreIndices(dimIS, &points);CHKERRQ(ierr); 1923cd0c2139SMatthew G Knepley ierr = ISDestroy(&dimIS);CHKERRQ(ierr); 192418c5995bSMatthew G. Knepley /* If any faces touching the fault divide cells on either side, split them */ 192518c5995bSMatthew G. Knepley ierr = DMLabelGetStratumIS(label, shift+dim-1, &facePosIS);CHKERRQ(ierr); 192618c5995bSMatthew G. Knepley ierr = DMLabelGetStratumIS(label, -(shift+dim-1), &faceNegIS);CHKERRQ(ierr); 192718c5995bSMatthew G. Knepley ierr = ISExpand(facePosIS, faceNegIS, &dimIS);CHKERRQ(ierr); 192818c5995bSMatthew G. Knepley ierr = ISDestroy(&facePosIS);CHKERRQ(ierr); 192918c5995bSMatthew G. Knepley ierr = ISDestroy(&faceNegIS);CHKERRQ(ierr); 193018c5995bSMatthew G. Knepley ierr = ISGetLocalSize(dimIS, &numPoints);CHKERRQ(ierr); 193118c5995bSMatthew G. Knepley ierr = ISGetIndices(dimIS, &points);CHKERRQ(ierr); 193218c5995bSMatthew G. Knepley for (p = 0; p < numPoints; ++p) { 193318c5995bSMatthew G. Knepley const PetscInt point = points[p]; 193418c5995bSMatthew G. Knepley const PetscInt *support; 193518c5995bSMatthew G. Knepley PetscInt supportSize, valA, valB; 193618c5995bSMatthew G. Knepley 193718c5995bSMatthew G. Knepley ierr = DMPlexGetSupportSize(dm, point, &supportSize);CHKERRQ(ierr); 193818c5995bSMatthew G. Knepley if (supportSize != 2) continue; 193918c5995bSMatthew G. Knepley ierr = DMPlexGetSupport(dm, point, &support);CHKERRQ(ierr); 194018c5995bSMatthew G. Knepley ierr = DMLabelGetValue(label, support[0], &valA);CHKERRQ(ierr); 194118c5995bSMatthew G. Knepley ierr = DMLabelGetValue(label, support[1], &valB);CHKERRQ(ierr); 194218c5995bSMatthew G. Knepley if ((valA == -1) || (valB == -1)) continue; 194318c5995bSMatthew G. Knepley if (valA*valB > 0) continue; 194418c5995bSMatthew G. Knepley /* Split the face */ 194518c5995bSMatthew G. Knepley ierr = DMLabelGetValue(label, point, &valA);CHKERRQ(ierr); 194618c5995bSMatthew G. Knepley ierr = DMLabelClearValue(label, point, valA);CHKERRQ(ierr); 194718c5995bSMatthew G. Knepley ierr = DMLabelSetValue(label, point, dim-1);CHKERRQ(ierr); 1948e1757548SMatthew G. Knepley /* Label its closure: 1949e1757548SMatthew G. Knepley unmarked: label as unsplit 1950e1757548SMatthew G. Knepley incident: relabel as split 1951e1757548SMatthew G. Knepley split: do nothing 1952e1757548SMatthew G. Knepley */ 195318c5995bSMatthew G. Knepley { 195418c5995bSMatthew G. Knepley PetscInt *closure = NULL; 195518c5995bSMatthew G. Knepley PetscInt closureSize, cl; 195618c5995bSMatthew G. Knepley 195718c5995bSMatthew G. Knepley ierr = DMPlexGetTransitiveClosure(dm, point, PETSC_TRUE, &closureSize, &closure);CHKERRQ(ierr); 195818c5995bSMatthew G. Knepley for (cl = 0; cl < closureSize*2; cl += 2) { 195918c5995bSMatthew G. Knepley ierr = DMLabelGetValue(label, closure[cl], &valA);CHKERRQ(ierr); 19608771c1d3SMatthew G. Knepley if (valA == -1) { /* Mark as unsplit */ 196118c5995bSMatthew G. Knepley ierr = DMLabelGetValue(depthLabel, closure[cl], &dep);CHKERRQ(ierr); 196218c5995bSMatthew G. Knepley ierr = DMLabelSetValue(label, closure[cl], shift2+dep);CHKERRQ(ierr); 19638771c1d3SMatthew G. Knepley } else if (((valA >= shift) && (valA < shift2)) || ((valA <= -shift) && (valA > -shift2))) { 1964e1757548SMatthew G. Knepley ierr = DMLabelGetValue(depthLabel, closure[cl], &dep);CHKERRQ(ierr); 1965e1757548SMatthew G. Knepley ierr = DMLabelClearValue(label, closure[cl], valA);CHKERRQ(ierr); 1966e1757548SMatthew G. Knepley ierr = DMLabelSetValue(label, closure[cl], dep);CHKERRQ(ierr); 1967e1757548SMatthew G. Knepley } 196818c5995bSMatthew G. Knepley } 196918c5995bSMatthew G. Knepley ierr = DMPlexRestoreTransitiveClosure(dm, point, PETSC_TRUE, &closureSize, &closure);CHKERRQ(ierr); 197018c5995bSMatthew G. Knepley } 197118c5995bSMatthew G. Knepley } 197218c5995bSMatthew G. Knepley ierr = ISRestoreIndices(dimIS, &points);CHKERRQ(ierr); 197318c5995bSMatthew G. Knepley ierr = ISDestroy(&dimIS);CHKERRQ(ierr); 1974370472baSMatthew G. Knepley ierr = PetscFree(pMax);CHKERRQ(ierr); 1975cd0c2139SMatthew G Knepley PetscFunctionReturn(0); 1976cd0c2139SMatthew G Knepley } 1977cd0c2139SMatthew G Knepley 1978720e594eSMatthew G. Knepley /* Check that no cell have all vertices on the fault */ 1979720e594eSMatthew G. Knepley PetscErrorCode DMPlexCheckValidSubmesh_Private(DM dm, DMLabel label, DM subdm) 1980720e594eSMatthew G. Knepley { 1981720e594eSMatthew G. Knepley IS subpointIS; 1982720e594eSMatthew G. Knepley const PetscInt *dmpoints; 1983720e594eSMatthew G. Knepley PetscInt defaultValue, cStart, cEnd, c, vStart, vEnd; 1984720e594eSMatthew G. Knepley PetscErrorCode ierr; 1985720e594eSMatthew G. Knepley 1986720e594eSMatthew G. Knepley PetscFunctionBegin; 1987720e594eSMatthew G. Knepley if (!label) PetscFunctionReturn(0); 1988720e594eSMatthew G. Knepley ierr = DMLabelGetDefaultValue(label, &defaultValue);CHKERRQ(ierr); 1989720e594eSMatthew G. Knepley ierr = DMPlexCreateSubpointIS(subdm, &subpointIS);CHKERRQ(ierr); 1990720e594eSMatthew G. Knepley if (!subpointIS) PetscFunctionReturn(0); 1991720e594eSMatthew G. Knepley ierr = DMPlexGetHeightStratum(subdm, 0, &cStart, &cEnd);CHKERRQ(ierr); 1992720e594eSMatthew G. Knepley ierr = DMPlexGetDepthStratum(dm, 0, &vStart, &vEnd);CHKERRQ(ierr); 1993720e594eSMatthew G. Knepley ierr = ISGetIndices(subpointIS, &dmpoints);CHKERRQ(ierr); 1994720e594eSMatthew G. Knepley for (c = cStart; c < cEnd; ++c) { 1995720e594eSMatthew G. Knepley PetscBool invalidCell = PETSC_TRUE; 1996720e594eSMatthew G. Knepley PetscInt *closure = NULL; 1997720e594eSMatthew G. Knepley PetscInt closureSize, cl; 1998720e594eSMatthew G. Knepley 1999720e594eSMatthew G. Knepley ierr = DMPlexGetTransitiveClosure(dm, dmpoints[c], PETSC_TRUE, &closureSize, &closure);CHKERRQ(ierr); 2000720e594eSMatthew G. Knepley for (cl = 0; cl < closureSize*2; cl += 2) { 2001720e594eSMatthew G. Knepley PetscInt value = 0; 2002720e594eSMatthew G. Knepley 2003720e594eSMatthew G. Knepley if ((closure[cl] < vStart) || (closure[cl] >= vEnd)) continue; 2004720e594eSMatthew G. Knepley ierr = DMLabelGetValue(label, closure[cl], &value);CHKERRQ(ierr); 2005720e594eSMatthew G. Knepley if (value == defaultValue) {invalidCell = PETSC_FALSE; break;} 2006720e594eSMatthew G. Knepley } 2007720e594eSMatthew G. Knepley ierr = DMPlexRestoreTransitiveClosure(dm, dmpoints[c], PETSC_TRUE, &closureSize, &closure);CHKERRQ(ierr); 2008720e594eSMatthew G. Knepley if (invalidCell) { 2009720e594eSMatthew G. Knepley ierr = ISRestoreIndices(subpointIS, &dmpoints);CHKERRQ(ierr); 2010720e594eSMatthew G. Knepley ierr = ISDestroy(&subpointIS);CHKERRQ(ierr); 2011720e594eSMatthew G. Knepley ierr = DMDestroy(&subdm);CHKERRQ(ierr); 2012720e594eSMatthew G. Knepley SETERRQ1(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Ambiguous submesh. Cell %D has all of its vertices on the submesh.", dmpoints[c]); 2013720e594eSMatthew G. Knepley } 2014720e594eSMatthew G. Knepley } 2015720e594eSMatthew G. Knepley ierr = ISRestoreIndices(subpointIS, &dmpoints);CHKERRQ(ierr); 2016720e594eSMatthew G. Knepley ierr = ISDestroy(&subpointIS);CHKERRQ(ierr); 2017720e594eSMatthew G. Knepley PetscFunctionReturn(0); 2018720e594eSMatthew G. Knepley } 2019720e594eSMatthew G. Knepley 2020720e594eSMatthew G. Knepley 2021c08575a3SMatthew G. Knepley /*@ 20223cf72582SMatthew G. Knepley DMPlexCreateHybridMesh - Create a mesh with hybrid cells along an internal interface 20233cf72582SMatthew G. Knepley 20243cf72582SMatthew G. Knepley Collective on dm 20253cf72582SMatthew G. Knepley 20263cf72582SMatthew G. Knepley Input Parameters: 20273cf72582SMatthew G. Knepley + dm - The original DM 2028720e594eSMatthew G. Knepley . label - The label specifying the interface vertices 2029720e594eSMatthew G. Knepley - bdlabel - The optional label specifying the interface boundary vertices 20303cf72582SMatthew G. Knepley 20313cf72582SMatthew G. Knepley Output Parameters: 20327db7e0a7SMatthew G. Knepley + hybridLabel - The label fully marking the interface, or NULL if no output is desired 20337db7e0a7SMatthew G. Knepley . splitLabel - The label containing the split points, or NULL if no output is desired 2034720e594eSMatthew G. Knepley . dmInterface - The new interface DM, or NULL 2035720e594eSMatthew G. Knepley - dmHybrid - The new DM with cohesive cells 20363cf72582SMatthew G. Knepley 20376eccb800SMatthew Knepley Note: The hybridLabel indicates what parts of the original mesh impinged on the on division surface. For points 20386eccb800SMatthew Knepley directly on the division surface, they are labeled with their dimension, so an edge 7 on the division surface would be 20396eccb800SMatthew Knepley 7 (1) in hybridLabel. For points that impinge from the positive side, they are labeled with 100+dim, so an edge 6 with 20406eccb800SMatthew Knepley one vertex 3 on the surface would be 6 (101) and 3 (0) in hybridLabel. If an edge 9 from the negative side of the 20416eccb800SMatthew Knepley surface also hits vertex 3, it would be 9 (-101) in hybridLabel. 20426eccb800SMatthew Knepley 20436eccb800SMatthew Knepley The splitLabel indicates what points in the new hybrid mesh were the result of splitting points in the original 20446eccb800SMatthew Knepley mesh. The label value is +=100+dim for each point. For example, if two edges 10 and 14 in the hybrid resulting from 20456eccb800SMatthew Knepley splitting an edge in the original mesh, you would have 10 (101) and 14 (-101) in the splitLabel. 20466eccb800SMatthew Knepley 20476eccb800SMatthew Knepley The dmInterface is a DM built from the original division surface. It has a label which can be retrieved using 20486eccb800SMatthew Knepley DMPlexGetSubpointMap() which maps each point back to the point in the surface of the original mesh. 20496eccb800SMatthew Knepley 20503cf72582SMatthew G. Knepley Level: developer 20513cf72582SMatthew G. Knepley 20526eccb800SMatthew Knepley .seealso: DMPlexConstructCohesiveCells(), DMPlexLabelCohesiveComplete(), DMPlexGetSubpointMap(), DMCreate() 20533cf72582SMatthew G. Knepley @*/ 20547db7e0a7SMatthew G. Knepley PetscErrorCode DMPlexCreateHybridMesh(DM dm, DMLabel label, DMLabel bdlabel, DMLabel *hybridLabel, DMLabel *splitLabel, DM *dmInterface, DM *dmHybrid) 20553cf72582SMatthew G. Knepley { 20563cf72582SMatthew G. Knepley DM idm; 20577db7e0a7SMatthew G. Knepley DMLabel subpointMap, hlabel, slabel = NULL; 20583cf72582SMatthew G. Knepley PetscInt dim; 20593cf72582SMatthew G. Knepley PetscErrorCode ierr; 20603cf72582SMatthew G. Knepley 20613cf72582SMatthew G. Knepley PetscFunctionBegin; 20623cf72582SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 2063720e594eSMatthew G. Knepley if (bdlabel) PetscValidPointer(bdlabel, 3); 2064720e594eSMatthew G. Knepley if (hybridLabel) PetscValidPointer(hybridLabel, 4); 20657db7e0a7SMatthew G. Knepley if (splitLabel) PetscValidPointer(splitLabel, 5); 20667db7e0a7SMatthew G. Knepley if (dmInterface) PetscValidPointer(dmInterface, 6); 20677db7e0a7SMatthew G. Knepley PetscValidPointer(dmHybrid, 7); 2068c73cfb54SMatthew G. Knepley ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr); 2069158acfadSMatthew G. Knepley ierr = DMPlexCreateSubmesh(dm, label, 1, PETSC_FALSE, &idm);CHKERRQ(ierr); 2070720e594eSMatthew G. Knepley ierr = DMPlexCheckValidSubmesh_Private(dm, label, idm);CHKERRQ(ierr); 20713cf72582SMatthew G. Knepley ierr = DMPlexOrient(idm);CHKERRQ(ierr); 20723cf72582SMatthew G. Knepley ierr = DMPlexGetSubpointMap(idm, &subpointMap);CHKERRQ(ierr); 20733cf72582SMatthew G. Knepley ierr = DMLabelDuplicate(subpointMap, &hlabel);CHKERRQ(ierr); 20743cf72582SMatthew G. Knepley ierr = DMLabelClearStratum(hlabel, dim);CHKERRQ(ierr); 20757db7e0a7SMatthew G. Knepley if (splitLabel) { 20767db7e0a7SMatthew G. Knepley const char *name; 20777db7e0a7SMatthew G. Knepley char sname[PETSC_MAX_PATH_LEN]; 20787db7e0a7SMatthew G. Knepley 2079d67d17b1SMatthew G. Knepley ierr = PetscObjectGetName((PetscObject) hlabel, &name);CHKERRQ(ierr); 20807db7e0a7SMatthew G. Knepley ierr = PetscStrncpy(sname, name, PETSC_MAX_PATH_LEN);CHKERRQ(ierr); 20817db7e0a7SMatthew G. Knepley ierr = PetscStrcat(sname, " split");CHKERRQ(ierr); 2082d67d17b1SMatthew G. Knepley ierr = DMLabelCreate(PETSC_COMM_SELF, sname, &slabel);CHKERRQ(ierr); 20837db7e0a7SMatthew G. Knepley } 2084720e594eSMatthew G. Knepley ierr = DMPlexLabelCohesiveComplete(dm, hlabel, bdlabel, PETSC_FALSE, idm);CHKERRQ(ierr); 2085720e594eSMatthew G. Knepley if (dmInterface) {*dmInterface = idm;} 2086720e594eSMatthew G. Knepley else {ierr = DMDestroy(&idm);CHKERRQ(ierr);} 20877db7e0a7SMatthew G. Knepley ierr = DMPlexConstructCohesiveCells(dm, hlabel, slabel, dmHybrid);CHKERRQ(ierr); 20883cf72582SMatthew G. Knepley if (hybridLabel) *hybridLabel = hlabel; 208953aa2e23SMatthew G. Knepley else {ierr = DMLabelDestroy(&hlabel);CHKERRQ(ierr);} 20907db7e0a7SMatthew G. Knepley if (splitLabel) *splitLabel = slabel; 2091cd0c2139SMatthew G Knepley PetscFunctionReturn(0); 2092cd0c2139SMatthew G Knepley } 2093cd0c2139SMatthew G Knepley 2094efa14ee0SMatthew G Knepley /* Here we need the explicit assumption that: 2095efa14ee0SMatthew G Knepley 2096efa14ee0SMatthew G Knepley For any marked cell, the marked vertices constitute a single face 2097efa14ee0SMatthew G Knepley */ 2098830e53efSMatthew G. Knepley static PetscErrorCode DMPlexMarkSubmesh_Uninterpolated(DM dm, DMLabel vertexLabel, PetscInt value, DMLabel subpointMap, PetscInt *numFaces, PetscInt *nFV, DM subdm) 2099efa14ee0SMatthew G Knepley { 2100fed694aaSMatthew G. Knepley IS subvertexIS = NULL; 2101efa14ee0SMatthew G Knepley const PetscInt *subvertices; 210277d178adSMatthew G. Knepley PetscInt *pStart, *pEnd, *pMax, pSize; 2103efa14ee0SMatthew G Knepley PetscInt depth, dim, d, numSubVerticesInitial = 0, v; 2104efa14ee0SMatthew G Knepley PetscErrorCode ierr; 2105efa14ee0SMatthew G Knepley 2106efa14ee0SMatthew G Knepley PetscFunctionBegin; 2107efa14ee0SMatthew G Knepley *numFaces = 0; 2108efa14ee0SMatthew G Knepley *nFV = 0; 2109efa14ee0SMatthew G Knepley ierr = DMPlexGetDepth(dm, &depth);CHKERRQ(ierr); 2110c73cfb54SMatthew G. Knepley ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr); 211177d178adSMatthew G. Knepley pSize = PetscMax(depth, dim) + 1; 2112dcca6d9dSJed Brown ierr = PetscMalloc3(pSize,&pStart,pSize,&pEnd,pSize,&pMax);CHKERRQ(ierr); 2113d92e47f8SMatthew G. Knepley ierr = DMPlexGetHybridBounds(dm, depth >= 0 ? &pMax[depth] : NULL, depth>1 ? &pMax[depth-1] : NULL, depth>2 ? &pMax[1] : NULL, &pMax[0]);CHKERRQ(ierr); 2114efa14ee0SMatthew G Knepley for (d = 0; d <= depth; ++d) { 2115efa14ee0SMatthew G Knepley ierr = DMPlexGetDepthStratum(dm, d, &pStart[d], &pEnd[d]);CHKERRQ(ierr); 2116efa14ee0SMatthew G Knepley if (pMax[d] >= 0) pEnd[d] = PetscMin(pEnd[d], pMax[d]); 2117efa14ee0SMatthew G Knepley } 2118efa14ee0SMatthew G Knepley /* Loop over initial vertices and mark all faces in the collective star() */ 2119fed694aaSMatthew G. Knepley if (vertexLabel) {ierr = DMLabelGetStratumIS(vertexLabel, value, &subvertexIS);CHKERRQ(ierr);} 2120efa14ee0SMatthew G Knepley if (subvertexIS) { 2121efa14ee0SMatthew G Knepley ierr = ISGetSize(subvertexIS, &numSubVerticesInitial);CHKERRQ(ierr); 2122efa14ee0SMatthew G Knepley ierr = ISGetIndices(subvertexIS, &subvertices);CHKERRQ(ierr); 2123efa14ee0SMatthew G Knepley } 2124efa14ee0SMatthew G Knepley for (v = 0; v < numSubVerticesInitial; ++v) { 2125efa14ee0SMatthew G Knepley const PetscInt vertex = subvertices[v]; 21260298fd71SBarry Smith PetscInt *star = NULL; 2127efa14ee0SMatthew G Knepley PetscInt starSize, s, numCells = 0, c; 2128efa14ee0SMatthew G Knepley 2129efa14ee0SMatthew G Knepley ierr = DMPlexGetTransitiveClosure(dm, vertex, PETSC_FALSE, &starSize, &star);CHKERRQ(ierr); 2130efa14ee0SMatthew G Knepley for (s = 0; s < starSize*2; s += 2) { 2131efa14ee0SMatthew G Knepley const PetscInt point = star[s]; 2132efa14ee0SMatthew G Knepley if ((point >= pStart[depth]) && (point < pEnd[depth])) star[numCells++] = point; 2133efa14ee0SMatthew G Knepley } 2134efa14ee0SMatthew G Knepley for (c = 0; c < numCells; ++c) { 2135efa14ee0SMatthew G Knepley const PetscInt cell = star[c]; 21360298fd71SBarry Smith PetscInt *closure = NULL; 2137efa14ee0SMatthew G Knepley PetscInt closureSize, cl; 2138efa14ee0SMatthew G Knepley PetscInt cellLoc, numCorners = 0, faceSize = 0; 2139efa14ee0SMatthew G Knepley 2140efa14ee0SMatthew G Knepley ierr = DMLabelGetValue(subpointMap, cell, &cellLoc);CHKERRQ(ierr); 214165560c7fSMatthew G Knepley if (cellLoc == 2) continue; 214282f516ccSBarry Smith if (cellLoc >= 0) SETERRQ2(PetscObjectComm((PetscObject)dm), PETSC_ERR_PLIB, "Cell %d has dimension %d in the surface label", cell, cellLoc); 2143efa14ee0SMatthew G Knepley ierr = DMPlexGetTransitiveClosure(dm, cell, PETSC_TRUE, &closureSize, &closure);CHKERRQ(ierr); 2144efa14ee0SMatthew G Knepley for (cl = 0; cl < closureSize*2; cl += 2) { 2145efa14ee0SMatthew G Knepley const PetscInt point = closure[cl]; 2146efa14ee0SMatthew G Knepley PetscInt vertexLoc; 2147efa14ee0SMatthew G Knepley 2148efa14ee0SMatthew G Knepley if ((point >= pStart[0]) && (point < pEnd[0])) { 2149efa14ee0SMatthew G Knepley ++numCorners; 2150efa14ee0SMatthew G Knepley ierr = DMLabelGetValue(vertexLabel, point, &vertexLoc);CHKERRQ(ierr); 2151830e53efSMatthew G. Knepley if (vertexLoc == value) closure[faceSize++] = point; 2152efa14ee0SMatthew G Knepley } 2153efa14ee0SMatthew G Knepley } 215418ad9376SMatthew G. Knepley if (!(*nFV)) {ierr = DMPlexGetNumFaceVertices(dm, dim, numCorners, nFV);CHKERRQ(ierr);} 215582f516ccSBarry Smith if (faceSize > *nFV) SETERRQ1(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Invalid submesh: Too many vertices %d of an element on the surface", faceSize); 2156efa14ee0SMatthew G Knepley if (faceSize == *nFV) { 2157007baee2SMatthew G. Knepley const PetscInt *cells = NULL; 2158007baee2SMatthew G. Knepley PetscInt numCells, nc; 2159007baee2SMatthew G. Knepley 2160efa14ee0SMatthew G Knepley ++(*numFaces); 2161efa14ee0SMatthew G Knepley for (cl = 0; cl < faceSize; ++cl) { 2162efa14ee0SMatthew G Knepley ierr = DMLabelSetValue(subpointMap, closure[cl], 0);CHKERRQ(ierr); 2163efa14ee0SMatthew G Knepley } 2164007baee2SMatthew G. Knepley ierr = DMPlexGetJoin(dm, faceSize, closure, &numCells, &cells);CHKERRQ(ierr); 2165007baee2SMatthew G. Knepley for (nc = 0; nc < numCells; ++nc) { 2166007baee2SMatthew G. Knepley ierr = DMLabelSetValue(subpointMap, cells[nc], 2);CHKERRQ(ierr); 2167007baee2SMatthew G. Knepley } 2168007baee2SMatthew G. Knepley ierr = DMPlexRestoreJoin(dm, faceSize, closure, &numCells, &cells);CHKERRQ(ierr); 2169efa14ee0SMatthew G Knepley } 2170efa14ee0SMatthew G Knepley ierr = DMPlexRestoreTransitiveClosure(dm, cell, PETSC_TRUE, &closureSize, &closure);CHKERRQ(ierr); 2171efa14ee0SMatthew G Knepley } 2172efa14ee0SMatthew G Knepley ierr = DMPlexRestoreTransitiveClosure(dm, vertex, PETSC_FALSE, &starSize, &star);CHKERRQ(ierr); 2173efa14ee0SMatthew G Knepley } 2174efa14ee0SMatthew G Knepley if (subvertexIS) { 2175efa14ee0SMatthew G Knepley ierr = ISRestoreIndices(subvertexIS, &subvertices);CHKERRQ(ierr); 2176efa14ee0SMatthew G Knepley } 2177efa14ee0SMatthew G Knepley ierr = ISDestroy(&subvertexIS);CHKERRQ(ierr); 2178efa14ee0SMatthew G Knepley ierr = PetscFree3(pStart,pEnd,pMax);CHKERRQ(ierr); 2179efa14ee0SMatthew G Knepley PetscFunctionReturn(0); 2180efa14ee0SMatthew G Knepley } 2181efa14ee0SMatthew G Knepley 2182158acfadSMatthew G. Knepley static PetscErrorCode DMPlexMarkSubmesh_Interpolated(DM dm, DMLabel vertexLabel, PetscInt value, PetscBool markedFaces, DMLabel subpointMap, DM subdm) 2183efa14ee0SMatthew G Knepley { 218434b4c39eSMatthew G. Knepley IS subvertexIS = NULL; 2185efa14ee0SMatthew G Knepley const PetscInt *subvertices; 2186efa14ee0SMatthew G Knepley PetscInt *pStart, *pEnd, *pMax; 2187efa14ee0SMatthew G Knepley PetscInt dim, d, numSubVerticesInitial = 0, v; 2188efa14ee0SMatthew G Knepley PetscErrorCode ierr; 2189efa14ee0SMatthew G Knepley 2190efa14ee0SMatthew G Knepley PetscFunctionBegin; 2191c73cfb54SMatthew G. Knepley ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr); 2192dcca6d9dSJed Brown ierr = PetscMalloc3(dim+1,&pStart,dim+1,&pEnd,dim+1,&pMax);CHKERRQ(ierr); 21930298fd71SBarry Smith ierr = DMPlexGetHybridBounds(dm, &pMax[dim], dim>1 ? &pMax[dim-1] : NULL, dim > 2 ? &pMax[1] : NULL, &pMax[0]);CHKERRQ(ierr); 2194efa14ee0SMatthew G Knepley for (d = 0; d <= dim; ++d) { 2195efa14ee0SMatthew G Knepley ierr = DMPlexGetDepthStratum(dm, d, &pStart[d], &pEnd[d]);CHKERRQ(ierr); 2196efa14ee0SMatthew G Knepley if (pMax[d] >= 0) pEnd[d] = PetscMin(pEnd[d], pMax[d]); 2197efa14ee0SMatthew G Knepley } 2198efa14ee0SMatthew G Knepley /* Loop over initial vertices and mark all faces in the collective star() */ 219934b4c39eSMatthew G. Knepley if (vertexLabel) { 2200830e53efSMatthew G. Knepley ierr = DMLabelGetStratumIS(vertexLabel, value, &subvertexIS);CHKERRQ(ierr); 2201efa14ee0SMatthew G Knepley if (subvertexIS) { 2202efa14ee0SMatthew G Knepley ierr = ISGetSize(subvertexIS, &numSubVerticesInitial);CHKERRQ(ierr); 2203efa14ee0SMatthew G Knepley ierr = ISGetIndices(subvertexIS, &subvertices);CHKERRQ(ierr); 2204efa14ee0SMatthew G Knepley } 220534b4c39eSMatthew G. Knepley } 2206efa14ee0SMatthew G Knepley for (v = 0; v < numSubVerticesInitial; ++v) { 2207efa14ee0SMatthew G Knepley const PetscInt vertex = subvertices[v]; 22080298fd71SBarry Smith PetscInt *star = NULL; 2209efa14ee0SMatthew G Knepley PetscInt starSize, s, numFaces = 0, f; 2210efa14ee0SMatthew G Knepley 2211efa14ee0SMatthew G Knepley ierr = DMPlexGetTransitiveClosure(dm, vertex, PETSC_FALSE, &starSize, &star);CHKERRQ(ierr); 2212efa14ee0SMatthew G Knepley for (s = 0; s < starSize*2; s += 2) { 2213efa14ee0SMatthew G Knepley const PetscInt point = star[s]; 2214158acfadSMatthew G. Knepley PetscInt faceLoc; 2215158acfadSMatthew G. Knepley 2216158acfadSMatthew G. Knepley if ((point >= pStart[dim-1]) && (point < pEnd[dim-1])) { 2217158acfadSMatthew G. Knepley if (markedFaces) { 2218158acfadSMatthew G. Knepley ierr = DMLabelGetValue(vertexLabel, point, &faceLoc);CHKERRQ(ierr); 2219158acfadSMatthew G. Knepley if (faceLoc < 0) continue; 2220158acfadSMatthew G. Knepley } 2221158acfadSMatthew G. Knepley star[numFaces++] = point; 2222158acfadSMatthew G. Knepley } 2223efa14ee0SMatthew G Knepley } 2224efa14ee0SMatthew G Knepley for (f = 0; f < numFaces; ++f) { 2225efa14ee0SMatthew G Knepley const PetscInt face = star[f]; 22260298fd71SBarry Smith PetscInt *closure = NULL; 2227efa14ee0SMatthew G Knepley PetscInt closureSize, c; 2228efa14ee0SMatthew G Knepley PetscInt faceLoc; 2229efa14ee0SMatthew G Knepley 2230efa14ee0SMatthew G Knepley ierr = DMLabelGetValue(subpointMap, face, &faceLoc);CHKERRQ(ierr); 2231efa14ee0SMatthew G Knepley if (faceLoc == dim-1) continue; 223282f516ccSBarry Smith if (faceLoc >= 0) SETERRQ2(PetscObjectComm((PetscObject)dm), PETSC_ERR_PLIB, "Face %d has dimension %d in the surface label", face, faceLoc); 2233efa14ee0SMatthew G Knepley ierr = DMPlexGetTransitiveClosure(dm, face, PETSC_TRUE, &closureSize, &closure);CHKERRQ(ierr); 2234efa14ee0SMatthew G Knepley for (c = 0; c < closureSize*2; c += 2) { 2235efa14ee0SMatthew G Knepley const PetscInt point = closure[c]; 2236efa14ee0SMatthew G Knepley PetscInt vertexLoc; 2237efa14ee0SMatthew G Knepley 2238efa14ee0SMatthew G Knepley if ((point >= pStart[0]) && (point < pEnd[0])) { 2239efa14ee0SMatthew G Knepley ierr = DMLabelGetValue(vertexLabel, point, &vertexLoc);CHKERRQ(ierr); 2240830e53efSMatthew G. Knepley if (vertexLoc != value) break; 2241efa14ee0SMatthew G Knepley } 2242efa14ee0SMatthew G Knepley } 2243efa14ee0SMatthew G Knepley if (c == closureSize*2) { 2244efa14ee0SMatthew G Knepley const PetscInt *support; 2245efa14ee0SMatthew G Knepley PetscInt supportSize, s; 2246efa14ee0SMatthew G Knepley 2247efa14ee0SMatthew G Knepley for (c = 0; c < closureSize*2; c += 2) { 2248efa14ee0SMatthew G Knepley const PetscInt point = closure[c]; 2249efa14ee0SMatthew G Knepley 2250efa14ee0SMatthew G Knepley for (d = 0; d < dim; ++d) { 2251efa14ee0SMatthew G Knepley if ((point >= pStart[d]) && (point < pEnd[d])) { 2252efa14ee0SMatthew G Knepley ierr = DMLabelSetValue(subpointMap, point, d);CHKERRQ(ierr); 2253efa14ee0SMatthew G Knepley break; 2254efa14ee0SMatthew G Knepley } 2255efa14ee0SMatthew G Knepley } 2256efa14ee0SMatthew G Knepley } 2257efa14ee0SMatthew G Knepley ierr = DMPlexGetSupportSize(dm, face, &supportSize);CHKERRQ(ierr); 2258efa14ee0SMatthew G Knepley ierr = DMPlexGetSupport(dm, face, &support);CHKERRQ(ierr); 2259efa14ee0SMatthew G Knepley for (s = 0; s < supportSize; ++s) { 2260efa14ee0SMatthew G Knepley ierr = DMLabelSetValue(subpointMap, support[s], dim);CHKERRQ(ierr); 2261efa14ee0SMatthew G Knepley } 2262efa14ee0SMatthew G Knepley } 2263efa14ee0SMatthew G Knepley ierr = DMPlexRestoreTransitiveClosure(dm, face, PETSC_TRUE, &closureSize, &closure);CHKERRQ(ierr); 2264efa14ee0SMatthew G Knepley } 2265efa14ee0SMatthew G Knepley ierr = DMPlexRestoreTransitiveClosure(dm, vertex, PETSC_FALSE, &starSize, &star);CHKERRQ(ierr); 2266efa14ee0SMatthew G Knepley } 226734b4c39eSMatthew G. Knepley if (subvertexIS) {ierr = ISRestoreIndices(subvertexIS, &subvertices);CHKERRQ(ierr);} 2268efa14ee0SMatthew G Knepley ierr = ISDestroy(&subvertexIS);CHKERRQ(ierr); 2269efa14ee0SMatthew G Knepley ierr = PetscFree3(pStart,pEnd,pMax);CHKERRQ(ierr); 2270efa14ee0SMatthew G Knepley PetscFunctionReturn(0); 2271efa14ee0SMatthew G Knepley } 2272efa14ee0SMatthew G Knepley 227327c04023SMatthew G. Knepley static PetscErrorCode DMPlexMarkCohesiveSubmesh_Uninterpolated(DM dm, PetscBool hasLagrange, const char labelname[], PetscInt value, DMLabel subpointMap, PetscInt *numFaces, PetscInt *nFV, PetscInt *subCells[], DM subdm) 2274766ab985SMatthew G. Knepley { 227527c04023SMatthew G. Knepley DMLabel label = NULL; 2276766ab985SMatthew G. Knepley const PetscInt *cone; 22779fc93327SToby Isaac PetscInt dim, cMax, cEnd, c, subc = 0, p, coneSize = -1; 2278766ab985SMatthew G. Knepley PetscErrorCode ierr; 2279766ab985SMatthew G. Knepley 2280812bfc34SJed Brown PetscFunctionBegin; 2281c0ed958bSJed Brown *numFaces = 0; 2282c0ed958bSJed Brown *nFV = 0; 2283c58f1c22SToby Isaac if (labelname) {ierr = DMGetLabel(dm, labelname, &label);CHKERRQ(ierr);} 2284fed694aaSMatthew G. Knepley *subCells = NULL; 2285c73cfb54SMatthew G. Knepley ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr); 2286766ab985SMatthew G. Knepley ierr = DMPlexGetHeightStratum(dm, 0, NULL, &cEnd);CHKERRQ(ierr); 2287766ab985SMatthew G. Knepley ierr = DMPlexGetHybridBounds(dm, &cMax, NULL, NULL, NULL);CHKERRQ(ierr); 2288766ab985SMatthew G. Knepley if (cMax < 0) PetscFunctionReturn(0); 228927c04023SMatthew G. Knepley if (label) { 229027c04023SMatthew G. Knepley for (c = cMax; c < cEnd; ++c) { 229127c04023SMatthew G. Knepley PetscInt val; 229227c04023SMatthew G. Knepley 229327c04023SMatthew G. Knepley ierr = DMLabelGetValue(label, c, &val);CHKERRQ(ierr); 229427c04023SMatthew G. Knepley if (val == value) { 229527c04023SMatthew G. Knepley ++(*numFaces); 229627c04023SMatthew G. Knepley ierr = DMPlexGetConeSize(dm, c, &coneSize);CHKERRQ(ierr); 229727c04023SMatthew G. Knepley } 229827c04023SMatthew G. Knepley } 229927c04023SMatthew G. Knepley } else { 2300766ab985SMatthew G. Knepley *numFaces = cEnd - cMax; 230127c04023SMatthew G. Knepley ierr = DMPlexGetConeSize(dm, cMax, &coneSize);CHKERRQ(ierr); 230227c04023SMatthew G. Knepley } 2303785e854fSJed Brown ierr = PetscMalloc1(*numFaces *2, subCells);CHKERRQ(ierr); 23049fc93327SToby Isaac if (!(*numFaces)) PetscFunctionReturn(0); 23059fc93327SToby Isaac *nFV = hasLagrange ? coneSize/3 : coneSize/2; 2306766ab985SMatthew G. Knepley for (c = cMax; c < cEnd; ++c) { 2307766ab985SMatthew G. Knepley const PetscInt *cells; 2308766ab985SMatthew G. Knepley PetscInt numCells; 2309766ab985SMatthew G. Knepley 231027c04023SMatthew G. Knepley if (label) { 231127c04023SMatthew G. Knepley PetscInt val; 231227c04023SMatthew G. Knepley 231327c04023SMatthew G. Knepley ierr = DMLabelGetValue(label, c, &val);CHKERRQ(ierr); 231427c04023SMatthew G. Knepley if (val != value) continue; 231527c04023SMatthew G. Knepley } 2316766ab985SMatthew G. Knepley ierr = DMPlexGetCone(dm, c, &cone);CHKERRQ(ierr); 2317766ab985SMatthew G. Knepley for (p = 0; p < *nFV; ++p) { 2318766ab985SMatthew G. Knepley ierr = DMLabelSetValue(subpointMap, cone[p], 0);CHKERRQ(ierr); 2319766ab985SMatthew G. Knepley } 2320766ab985SMatthew G. Knepley /* Negative face */ 2321766ab985SMatthew G. Knepley ierr = DMPlexGetJoin(dm, *nFV, cone, &numCells, &cells);CHKERRQ(ierr); 232227234c99SMatthew G. Knepley /* Not true in parallel 232327234c99SMatthew G. Knepley if (numCells != 2) SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Cohesive cells should separate two cells"); */ 2324766ab985SMatthew G. Knepley for (p = 0; p < numCells; ++p) { 2325766ab985SMatthew G. Knepley ierr = DMLabelSetValue(subpointMap, cells[p], 2);CHKERRQ(ierr); 232627234c99SMatthew G. Knepley (*subCells)[subc++] = cells[p]; 2327766ab985SMatthew G. Knepley } 2328766ab985SMatthew G. Knepley ierr = DMPlexRestoreJoin(dm, *nFV, cone, &numCells, &cells);CHKERRQ(ierr); 2329766ab985SMatthew G. Knepley /* Positive face is not included */ 2330766ab985SMatthew G. Knepley } 2331766ab985SMatthew G. Knepley PetscFunctionReturn(0); 2332766ab985SMatthew G. Knepley } 2333766ab985SMatthew G. Knepley 23343982b651SMatthew G. Knepley static PetscErrorCode DMPlexMarkCohesiveSubmesh_Interpolated(DM dm, DMLabel label, PetscInt value, DMLabel subpointMap, DM subdm) 2335766ab985SMatthew G. Knepley { 2336766ab985SMatthew G. Knepley PetscInt *pStart, *pEnd; 2337766ab985SMatthew G. Knepley PetscInt dim, cMax, cEnd, c, d; 2338766ab985SMatthew G. Knepley PetscErrorCode ierr; 2339766ab985SMatthew G. Knepley 2340812bfc34SJed Brown PetscFunctionBegin; 2341c73cfb54SMatthew G. Knepley ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr); 2342766ab985SMatthew G. Knepley ierr = DMPlexGetHeightStratum(dm, 0, NULL, &cEnd);CHKERRQ(ierr); 2343766ab985SMatthew G. Knepley ierr = DMPlexGetHybridBounds(dm, &cMax, NULL, NULL, NULL);CHKERRQ(ierr); 2344766ab985SMatthew G. Knepley if (cMax < 0) PetscFunctionReturn(0); 2345dcca6d9dSJed Brown ierr = PetscMalloc2(dim+1,&pStart,dim+1,&pEnd);CHKERRQ(ierr); 2346b3154360SMatthew G. Knepley for (d = 0; d <= dim; ++d) {ierr = DMPlexGetDepthStratum(dm, d, &pStart[d], &pEnd[d]);CHKERRQ(ierr);} 2347766ab985SMatthew G. Knepley for (c = cMax; c < cEnd; ++c) { 2348766ab985SMatthew G. Knepley const PetscInt *cone; 2349766ab985SMatthew G. Knepley PetscInt *closure = NULL; 2350b3154360SMatthew G. Knepley PetscInt fconeSize, coneSize, closureSize, cl, val; 2351766ab985SMatthew G. Knepley 235227c04023SMatthew G. Knepley if (label) { 235327c04023SMatthew G. Knepley ierr = DMLabelGetValue(label, c, &val);CHKERRQ(ierr); 235427c04023SMatthew G. Knepley if (val != value) continue; 235527c04023SMatthew G. Knepley } 2356766ab985SMatthew G. Knepley ierr = DMPlexGetConeSize(dm, c, &coneSize);CHKERRQ(ierr); 2357766ab985SMatthew G. Knepley ierr = DMPlexGetCone(dm, c, &cone);CHKERRQ(ierr); 2358b3154360SMatthew G. Knepley ierr = DMPlexGetConeSize(dm, cone[0], &fconeSize);CHKERRQ(ierr); 2359b3154360SMatthew G. Knepley if (coneSize != (fconeSize ? fconeSize : 1) + 2) SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Cohesive cells should separate two cells"); 2360b3154360SMatthew G. Knepley /* Negative face */ 2361766ab985SMatthew G. Knepley ierr = DMPlexGetTransitiveClosure(dm, cone[0], PETSC_TRUE, &closureSize, &closure);CHKERRQ(ierr); 2362766ab985SMatthew G. Knepley for (cl = 0; cl < closureSize*2; cl += 2) { 2363766ab985SMatthew G. Knepley const PetscInt point = closure[cl]; 2364766ab985SMatthew G. Knepley 2365766ab985SMatthew G. Knepley for (d = 0; d <= dim; ++d) { 2366766ab985SMatthew G. Knepley if ((point >= pStart[d]) && (point < pEnd[d])) { 2367766ab985SMatthew G. Knepley ierr = DMLabelSetValue(subpointMap, point, d);CHKERRQ(ierr); 2368766ab985SMatthew G. Knepley break; 2369766ab985SMatthew G. Knepley } 2370766ab985SMatthew G. Knepley } 2371766ab985SMatthew G. Knepley } 2372766ab985SMatthew G. Knepley ierr = DMPlexRestoreTransitiveClosure(dm, cone[0], PETSC_TRUE, &closureSize, &closure);CHKERRQ(ierr); 2373766ab985SMatthew G. Knepley /* Cells -- positive face is not included */ 2374766ab985SMatthew G. Knepley for (cl = 0; cl < 1; ++cl) { 2375766ab985SMatthew G. Knepley const PetscInt *support; 2376766ab985SMatthew G. Knepley PetscInt supportSize, s; 2377766ab985SMatthew G. Knepley 2378766ab985SMatthew G. Knepley ierr = DMPlexGetSupportSize(dm, cone[cl], &supportSize);CHKERRQ(ierr); 2379711de394SMatthew G. Knepley /* if (supportSize != 2) SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Cohesive faces should separate two cells"); */ 2380766ab985SMatthew G. Knepley ierr = DMPlexGetSupport(dm, cone[cl], &support);CHKERRQ(ierr); 2381766ab985SMatthew G. Knepley for (s = 0; s < supportSize; ++s) { 2382766ab985SMatthew G. Knepley ierr = DMLabelSetValue(subpointMap, support[s], dim);CHKERRQ(ierr); 2383766ab985SMatthew G. Knepley } 2384766ab985SMatthew G. Knepley } 2385766ab985SMatthew G. Knepley } 2386766ab985SMatthew G. Knepley ierr = PetscFree2(pStart, pEnd);CHKERRQ(ierr); 2387766ab985SMatthew G. Knepley PetscFunctionReturn(0); 2388766ab985SMatthew G. Knepley } 2389766ab985SMatthew G. Knepley 2390c08575a3SMatthew G. Knepley static PetscErrorCode DMPlexGetFaceOrientation(DM dm, PetscInt cell, PetscInt numCorners, PetscInt indices[], PetscInt oppositeVertex, PetscInt origVertices[], PetscInt faceVertices[], PetscBool *posOriented) 2391e6ccafaeSMatthew G Knepley { 239282f516ccSBarry Smith MPI_Comm comm; 2393e6ccafaeSMatthew G Knepley PetscBool posOrient = PETSC_FALSE; 2394e6ccafaeSMatthew G Knepley const PetscInt debug = 0; 2395e6ccafaeSMatthew G Knepley PetscInt cellDim, faceSize, f; 2396e6ccafaeSMatthew G Knepley PetscErrorCode ierr; 2397e6ccafaeSMatthew G Knepley 239882f516ccSBarry Smith PetscFunctionBegin; 239982f516ccSBarry Smith ierr = PetscObjectGetComm((PetscObject)dm,&comm);CHKERRQ(ierr); 2400c73cfb54SMatthew G. Knepley ierr = DMGetDimension(dm, &cellDim);CHKERRQ(ierr); 2401367003a6SStefano Zampini if (debug) {ierr = PetscPrintf(comm, "cellDim: %d numCorners: %d\n", cellDim, numCorners);CHKERRQ(ierr);} 2402e6ccafaeSMatthew G Knepley 2403ddeab2a6SMatthew G. Knepley if (cellDim == 1 && numCorners == 2) { 2404ddeab2a6SMatthew G. Knepley /* Triangle */ 2405e6ccafaeSMatthew G Knepley faceSize = numCorners-1; 2406e6ccafaeSMatthew G Knepley posOrient = !(oppositeVertex%2) ? PETSC_TRUE : PETSC_FALSE; 2407ddeab2a6SMatthew G. Knepley } else if (cellDim == 2 && numCorners == 3) { 2408ddeab2a6SMatthew G. Knepley /* Triangle */ 2409ddeab2a6SMatthew G. Knepley faceSize = numCorners-1; 2410ddeab2a6SMatthew G. Knepley posOrient = !(oppositeVertex%2) ? PETSC_TRUE : PETSC_FALSE; 2411ddeab2a6SMatthew G. Knepley } else if (cellDim == 3 && numCorners == 4) { 2412ddeab2a6SMatthew G. Knepley /* Tetrahedron */ 2413ddeab2a6SMatthew G. Knepley faceSize = numCorners-1; 2414ddeab2a6SMatthew G. Knepley posOrient = (oppositeVertex%2) ? PETSC_TRUE : PETSC_FALSE; 2415e6ccafaeSMatthew G Knepley } else if (cellDim == 1 && numCorners == 3) { 2416e6ccafaeSMatthew G Knepley /* Quadratic line */ 2417e6ccafaeSMatthew G Knepley faceSize = 1; 2418e6ccafaeSMatthew G Knepley posOrient = PETSC_TRUE; 2419e6ccafaeSMatthew G Knepley } else if (cellDim == 2 && numCorners == 4) { 2420e6ccafaeSMatthew G Knepley /* Quads */ 2421e6ccafaeSMatthew G Knepley faceSize = 2; 2422e6ccafaeSMatthew G Knepley if ((indices[1] > indices[0]) && (indices[1] - indices[0] == 1)) { 2423e6ccafaeSMatthew G Knepley posOrient = PETSC_TRUE; 2424e6ccafaeSMatthew G Knepley } else if ((indices[0] == 3) && (indices[1] == 0)) { 2425e6ccafaeSMatthew G Knepley posOrient = PETSC_TRUE; 2426e6ccafaeSMatthew G Knepley } else { 2427e6ccafaeSMatthew G Knepley if (((indices[0] > indices[1]) && (indices[0] - indices[1] == 1)) || ((indices[0] == 0) && (indices[1] == 3))) { 2428e6ccafaeSMatthew G Knepley posOrient = PETSC_FALSE; 2429e6ccafaeSMatthew G Knepley } else SETERRQ(comm, PETSC_ERR_ARG_WRONG, "Invalid quad crossedge"); 2430e6ccafaeSMatthew G Knepley } 2431e6ccafaeSMatthew G Knepley } else if (cellDim == 2 && numCorners == 6) { 2432e6ccafaeSMatthew G Knepley /* Quadratic triangle (I hate this) */ 2433e6ccafaeSMatthew G Knepley /* Edges are determined by the first 2 vertices (corners of edges) */ 2434e6ccafaeSMatthew G Knepley const PetscInt faceSizeTri = 3; 2435e6ccafaeSMatthew G Knepley PetscInt sortedIndices[3], i, iFace; 2436e6ccafaeSMatthew G Knepley PetscBool found = PETSC_FALSE; 2437e6ccafaeSMatthew G Knepley PetscInt faceVerticesTriSorted[9] = { 2438e6ccafaeSMatthew G Knepley 0, 3, 4, /* bottom */ 2439e6ccafaeSMatthew G Knepley 1, 4, 5, /* right */ 2440e6ccafaeSMatthew G Knepley 2, 3, 5, /* left */ 2441e6ccafaeSMatthew G Knepley }; 2442e6ccafaeSMatthew G Knepley PetscInt faceVerticesTri[9] = { 2443e6ccafaeSMatthew G Knepley 0, 3, 4, /* bottom */ 2444e6ccafaeSMatthew G Knepley 1, 4, 5, /* right */ 2445e6ccafaeSMatthew G Knepley 2, 5, 3, /* left */ 2446e6ccafaeSMatthew G Knepley }; 2447e6ccafaeSMatthew G Knepley 2448e6ccafaeSMatthew G Knepley for (i = 0; i < faceSizeTri; ++i) sortedIndices[i] = indices[i]; 2449e6ccafaeSMatthew G Knepley ierr = PetscSortInt(faceSizeTri, sortedIndices);CHKERRQ(ierr); 2450e6ccafaeSMatthew G Knepley for (iFace = 0; iFace < 3; ++iFace) { 2451e6ccafaeSMatthew G Knepley const PetscInt ii = iFace*faceSizeTri; 2452e6ccafaeSMatthew G Knepley PetscInt fVertex, cVertex; 2453e6ccafaeSMatthew G Knepley 2454e6ccafaeSMatthew G Knepley if ((sortedIndices[0] == faceVerticesTriSorted[ii+0]) && 2455e6ccafaeSMatthew G Knepley (sortedIndices[1] == faceVerticesTriSorted[ii+1])) { 2456e6ccafaeSMatthew G Knepley for (fVertex = 0; fVertex < faceSizeTri; ++fVertex) { 2457e6ccafaeSMatthew G Knepley for (cVertex = 0; cVertex < faceSizeTri; ++cVertex) { 2458e6ccafaeSMatthew G Knepley if (indices[cVertex] == faceVerticesTri[ii+fVertex]) { 2459e6ccafaeSMatthew G Knepley faceVertices[fVertex] = origVertices[cVertex]; 2460e6ccafaeSMatthew G Knepley break; 2461e6ccafaeSMatthew G Knepley } 2462e6ccafaeSMatthew G Knepley } 2463e6ccafaeSMatthew G Knepley } 2464e6ccafaeSMatthew G Knepley found = PETSC_TRUE; 2465e6ccafaeSMatthew G Knepley break; 2466e6ccafaeSMatthew G Knepley } 2467e6ccafaeSMatthew G Knepley } 2468e6ccafaeSMatthew G Knepley if (!found) SETERRQ(comm, PETSC_ERR_ARG_WRONG, "Invalid tri crossface"); 2469e6ccafaeSMatthew G Knepley if (posOriented) *posOriented = PETSC_TRUE; 2470e6ccafaeSMatthew G Knepley PetscFunctionReturn(0); 2471e6ccafaeSMatthew G Knepley } else if (cellDim == 2 && numCorners == 9) { 2472e6ccafaeSMatthew G Knepley /* Quadratic quad (I hate this) */ 2473e6ccafaeSMatthew G Knepley /* Edges are determined by the first 2 vertices (corners of edges) */ 2474e6ccafaeSMatthew G Knepley const PetscInt faceSizeQuad = 3; 2475e6ccafaeSMatthew G Knepley PetscInt sortedIndices[3], i, iFace; 2476e6ccafaeSMatthew G Knepley PetscBool found = PETSC_FALSE; 2477e6ccafaeSMatthew G Knepley PetscInt faceVerticesQuadSorted[12] = { 2478e6ccafaeSMatthew G Knepley 0, 1, 4, /* bottom */ 2479e6ccafaeSMatthew G Knepley 1, 2, 5, /* right */ 2480e6ccafaeSMatthew G Knepley 2, 3, 6, /* top */ 2481e6ccafaeSMatthew G Knepley 0, 3, 7, /* left */ 2482e6ccafaeSMatthew G Knepley }; 2483e6ccafaeSMatthew G Knepley PetscInt faceVerticesQuad[12] = { 2484e6ccafaeSMatthew G Knepley 0, 1, 4, /* bottom */ 2485e6ccafaeSMatthew G Knepley 1, 2, 5, /* right */ 2486e6ccafaeSMatthew G Knepley 2, 3, 6, /* top */ 2487e6ccafaeSMatthew G Knepley 3, 0, 7, /* left */ 2488e6ccafaeSMatthew G Knepley }; 2489e6ccafaeSMatthew G Knepley 2490e6ccafaeSMatthew G Knepley for (i = 0; i < faceSizeQuad; ++i) sortedIndices[i] = indices[i]; 2491e6ccafaeSMatthew G Knepley ierr = PetscSortInt(faceSizeQuad, sortedIndices);CHKERRQ(ierr); 2492e6ccafaeSMatthew G Knepley for (iFace = 0; iFace < 4; ++iFace) { 2493e6ccafaeSMatthew G Knepley const PetscInt ii = iFace*faceSizeQuad; 2494e6ccafaeSMatthew G Knepley PetscInt fVertex, cVertex; 2495e6ccafaeSMatthew G Knepley 2496e6ccafaeSMatthew G Knepley if ((sortedIndices[0] == faceVerticesQuadSorted[ii+0]) && 2497e6ccafaeSMatthew G Knepley (sortedIndices[1] == faceVerticesQuadSorted[ii+1])) { 2498e6ccafaeSMatthew G Knepley for (fVertex = 0; fVertex < faceSizeQuad; ++fVertex) { 2499e6ccafaeSMatthew G Knepley for (cVertex = 0; cVertex < faceSizeQuad; ++cVertex) { 2500e6ccafaeSMatthew G Knepley if (indices[cVertex] == faceVerticesQuad[ii+fVertex]) { 2501e6ccafaeSMatthew G Knepley faceVertices[fVertex] = origVertices[cVertex]; 2502e6ccafaeSMatthew G Knepley break; 2503e6ccafaeSMatthew G Knepley } 2504e6ccafaeSMatthew G Knepley } 2505e6ccafaeSMatthew G Knepley } 2506e6ccafaeSMatthew G Knepley found = PETSC_TRUE; 2507e6ccafaeSMatthew G Knepley break; 2508e6ccafaeSMatthew G Knepley } 2509e6ccafaeSMatthew G Knepley } 2510e6ccafaeSMatthew G Knepley if (!found) SETERRQ(comm, PETSC_ERR_ARG_WRONG, "Invalid quad crossface"); 2511e6ccafaeSMatthew G Knepley if (posOriented) *posOriented = PETSC_TRUE; 2512e6ccafaeSMatthew G Knepley PetscFunctionReturn(0); 2513e6ccafaeSMatthew G Knepley } else if (cellDim == 3 && numCorners == 8) { 2514e6ccafaeSMatthew G Knepley /* Hexes 2515e6ccafaeSMatthew G Knepley A hex is two oriented quads with the normal of the first 2516e6ccafaeSMatthew G Knepley pointing up at the second. 2517e6ccafaeSMatthew G Knepley 2518e6ccafaeSMatthew G Knepley 7---6 2519e6ccafaeSMatthew G Knepley /| /| 2520e6ccafaeSMatthew G Knepley 4---5 | 2521ddeab2a6SMatthew G. Knepley | 1-|-2 2522e6ccafaeSMatthew G Knepley |/ |/ 2523ddeab2a6SMatthew G. Knepley 0---3 2524e6ccafaeSMatthew G Knepley 2525e6ccafaeSMatthew G Knepley Faces are determined by the first 4 vertices (corners of faces) */ 2526e6ccafaeSMatthew G Knepley const PetscInt faceSizeHex = 4; 2527e6ccafaeSMatthew G Knepley PetscInt sortedIndices[4], i, iFace; 2528e6ccafaeSMatthew G Knepley PetscBool found = PETSC_FALSE; 2529e6ccafaeSMatthew G Knepley PetscInt faceVerticesHexSorted[24] = { 2530e6ccafaeSMatthew G Knepley 0, 1, 2, 3, /* bottom */ 2531e6ccafaeSMatthew G Knepley 4, 5, 6, 7, /* top */ 2532ddeab2a6SMatthew G. Knepley 0, 3, 4, 5, /* front */ 2533ddeab2a6SMatthew G. Knepley 2, 3, 5, 6, /* right */ 2534ddeab2a6SMatthew G. Knepley 1, 2, 6, 7, /* back */ 2535ddeab2a6SMatthew G. Knepley 0, 1, 4, 7, /* left */ 2536e6ccafaeSMatthew G Knepley }; 2537e6ccafaeSMatthew G Knepley PetscInt faceVerticesHex[24] = { 2538ddeab2a6SMatthew G. Knepley 1, 2, 3, 0, /* bottom */ 2539e6ccafaeSMatthew G Knepley 4, 5, 6, 7, /* top */ 2540ddeab2a6SMatthew G. Knepley 0, 3, 5, 4, /* front */ 2541ddeab2a6SMatthew G. Knepley 3, 2, 6, 5, /* right */ 2542ddeab2a6SMatthew G. Knepley 2, 1, 7, 6, /* back */ 2543ddeab2a6SMatthew G. Knepley 1, 0, 4, 7, /* left */ 2544e6ccafaeSMatthew G Knepley }; 2545e6ccafaeSMatthew G Knepley 2546e6ccafaeSMatthew G Knepley for (i = 0; i < faceSizeHex; ++i) sortedIndices[i] = indices[i]; 2547e6ccafaeSMatthew G Knepley ierr = PetscSortInt(faceSizeHex, sortedIndices);CHKERRQ(ierr); 2548e6ccafaeSMatthew G Knepley for (iFace = 0; iFace < 6; ++iFace) { 2549e6ccafaeSMatthew G Knepley const PetscInt ii = iFace*faceSizeHex; 2550e6ccafaeSMatthew G Knepley PetscInt fVertex, cVertex; 2551e6ccafaeSMatthew G Knepley 2552e6ccafaeSMatthew G Knepley if ((sortedIndices[0] == faceVerticesHexSorted[ii+0]) && 2553e6ccafaeSMatthew G Knepley (sortedIndices[1] == faceVerticesHexSorted[ii+1]) && 2554e6ccafaeSMatthew G Knepley (sortedIndices[2] == faceVerticesHexSorted[ii+2]) && 2555e6ccafaeSMatthew G Knepley (sortedIndices[3] == faceVerticesHexSorted[ii+3])) { 2556e6ccafaeSMatthew G Knepley for (fVertex = 0; fVertex < faceSizeHex; ++fVertex) { 2557e6ccafaeSMatthew G Knepley for (cVertex = 0; cVertex < faceSizeHex; ++cVertex) { 2558e6ccafaeSMatthew G Knepley if (indices[cVertex] == faceVerticesHex[ii+fVertex]) { 2559e6ccafaeSMatthew G Knepley faceVertices[fVertex] = origVertices[cVertex]; 2560e6ccafaeSMatthew G Knepley break; 2561e6ccafaeSMatthew G Knepley } 2562e6ccafaeSMatthew G Knepley } 2563e6ccafaeSMatthew G Knepley } 2564e6ccafaeSMatthew G Knepley found = PETSC_TRUE; 2565e6ccafaeSMatthew G Knepley break; 2566e6ccafaeSMatthew G Knepley } 2567e6ccafaeSMatthew G Knepley } 2568e6ccafaeSMatthew G Knepley if (!found) SETERRQ(comm, PETSC_ERR_ARG_WRONG, "Invalid hex crossface"); 2569e6ccafaeSMatthew G Knepley if (posOriented) *posOriented = PETSC_TRUE; 2570e6ccafaeSMatthew G Knepley PetscFunctionReturn(0); 2571e6ccafaeSMatthew G Knepley } else if (cellDim == 3 && numCorners == 10) { 2572e6ccafaeSMatthew G Knepley /* Quadratic tet */ 2573e6ccafaeSMatthew G Knepley /* Faces are determined by the first 3 vertices (corners of faces) */ 2574e6ccafaeSMatthew G Knepley const PetscInt faceSizeTet = 6; 2575e6ccafaeSMatthew G Knepley PetscInt sortedIndices[6], i, iFace; 2576e6ccafaeSMatthew G Knepley PetscBool found = PETSC_FALSE; 2577e6ccafaeSMatthew G Knepley PetscInt faceVerticesTetSorted[24] = { 2578e6ccafaeSMatthew G Knepley 0, 1, 2, 6, 7, 8, /* bottom */ 2579e6ccafaeSMatthew G Knepley 0, 3, 4, 6, 7, 9, /* front */ 2580e6ccafaeSMatthew G Knepley 1, 4, 5, 7, 8, 9, /* right */ 2581e6ccafaeSMatthew G Knepley 2, 3, 5, 6, 8, 9, /* left */ 2582e6ccafaeSMatthew G Knepley }; 2583e6ccafaeSMatthew G Knepley PetscInt faceVerticesTet[24] = { 2584e6ccafaeSMatthew G Knepley 0, 1, 2, 6, 7, 8, /* bottom */ 2585e6ccafaeSMatthew G Knepley 0, 4, 3, 6, 7, 9, /* front */ 2586e6ccafaeSMatthew G Knepley 1, 5, 4, 7, 8, 9, /* right */ 2587e6ccafaeSMatthew G Knepley 2, 3, 5, 8, 6, 9, /* left */ 2588e6ccafaeSMatthew G Knepley }; 2589e6ccafaeSMatthew G Knepley 2590e6ccafaeSMatthew G Knepley for (i = 0; i < faceSizeTet; ++i) sortedIndices[i] = indices[i]; 2591e6ccafaeSMatthew G Knepley ierr = PetscSortInt(faceSizeTet, sortedIndices);CHKERRQ(ierr); 2592e6ccafaeSMatthew G Knepley for (iFace=0; iFace < 4; ++iFace) { 2593e6ccafaeSMatthew G Knepley const PetscInt ii = iFace*faceSizeTet; 2594e6ccafaeSMatthew G Knepley PetscInt fVertex, cVertex; 2595e6ccafaeSMatthew G Knepley 2596e6ccafaeSMatthew G Knepley if ((sortedIndices[0] == faceVerticesTetSorted[ii+0]) && 2597e6ccafaeSMatthew G Knepley (sortedIndices[1] == faceVerticesTetSorted[ii+1]) && 2598e6ccafaeSMatthew G Knepley (sortedIndices[2] == faceVerticesTetSorted[ii+2]) && 2599e6ccafaeSMatthew G Knepley (sortedIndices[3] == faceVerticesTetSorted[ii+3])) { 2600e6ccafaeSMatthew G Knepley for (fVertex = 0; fVertex < faceSizeTet; ++fVertex) { 2601e6ccafaeSMatthew G Knepley for (cVertex = 0; cVertex < faceSizeTet; ++cVertex) { 2602e6ccafaeSMatthew G Knepley if (indices[cVertex] == faceVerticesTet[ii+fVertex]) { 2603e6ccafaeSMatthew G Knepley faceVertices[fVertex] = origVertices[cVertex]; 2604e6ccafaeSMatthew G Knepley break; 2605e6ccafaeSMatthew G Knepley } 2606e6ccafaeSMatthew G Knepley } 2607e6ccafaeSMatthew G Knepley } 2608e6ccafaeSMatthew G Knepley found = PETSC_TRUE; 2609e6ccafaeSMatthew G Knepley break; 2610e6ccafaeSMatthew G Knepley } 2611e6ccafaeSMatthew G Knepley } 2612e6ccafaeSMatthew G Knepley if (!found) SETERRQ(comm, PETSC_ERR_ARG_WRONG, "Invalid tet crossface"); 2613e6ccafaeSMatthew G Knepley if (posOriented) *posOriented = PETSC_TRUE; 2614e6ccafaeSMatthew G Knepley PetscFunctionReturn(0); 2615e6ccafaeSMatthew G Knepley } else if (cellDim == 3 && numCorners == 27) { 2616e6ccafaeSMatthew G Knepley /* Quadratic hexes (I hate this) 2617e6ccafaeSMatthew G Knepley A hex is two oriented quads with the normal of the first 2618e6ccafaeSMatthew G Knepley pointing up at the second. 2619e6ccafaeSMatthew G Knepley 2620e6ccafaeSMatthew G Knepley 7---6 2621e6ccafaeSMatthew G Knepley /| /| 2622e6ccafaeSMatthew G Knepley 4---5 | 2623e6ccafaeSMatthew G Knepley | 3-|-2 2624e6ccafaeSMatthew G Knepley |/ |/ 2625e6ccafaeSMatthew G Knepley 0---1 2626e6ccafaeSMatthew G Knepley 2627e6ccafaeSMatthew G Knepley Faces are determined by the first 4 vertices (corners of faces) */ 2628e6ccafaeSMatthew G Knepley const PetscInt faceSizeQuadHex = 9; 2629e6ccafaeSMatthew G Knepley PetscInt sortedIndices[9], i, iFace; 2630e6ccafaeSMatthew G Knepley PetscBool found = PETSC_FALSE; 2631e6ccafaeSMatthew G Knepley PetscInt faceVerticesQuadHexSorted[54] = { 2632e6ccafaeSMatthew G Knepley 0, 1, 2, 3, 8, 9, 10, 11, 24, /* bottom */ 2633e6ccafaeSMatthew G Knepley 4, 5, 6, 7, 12, 13, 14, 15, 25, /* top */ 2634e6ccafaeSMatthew G Knepley 0, 1, 4, 5, 8, 12, 16, 17, 22, /* front */ 2635e6ccafaeSMatthew G Knepley 1, 2, 5, 6, 9, 13, 17, 18, 21, /* right */ 2636e6ccafaeSMatthew G Knepley 2, 3, 6, 7, 10, 14, 18, 19, 23, /* back */ 2637e6ccafaeSMatthew G Knepley 0, 3, 4, 7, 11, 15, 16, 19, 20, /* left */ 2638e6ccafaeSMatthew G Knepley }; 2639e6ccafaeSMatthew G Knepley PetscInt faceVerticesQuadHex[54] = { 2640e6ccafaeSMatthew G Knepley 3, 2, 1, 0, 10, 9, 8, 11, 24, /* bottom */ 2641e6ccafaeSMatthew G Knepley 4, 5, 6, 7, 12, 13, 14, 15, 25, /* top */ 2642e6ccafaeSMatthew G Knepley 0, 1, 5, 4, 8, 17, 12, 16, 22, /* front */ 2643e6ccafaeSMatthew G Knepley 1, 2, 6, 5, 9, 18, 13, 17, 21, /* right */ 2644e6ccafaeSMatthew G Knepley 2, 3, 7, 6, 10, 19, 14, 18, 23, /* back */ 2645e6ccafaeSMatthew G Knepley 3, 0, 4, 7, 11, 16, 15, 19, 20 /* left */ 2646e6ccafaeSMatthew G Knepley }; 2647e6ccafaeSMatthew G Knepley 2648e6ccafaeSMatthew G Knepley for (i = 0; i < faceSizeQuadHex; ++i) sortedIndices[i] = indices[i]; 2649e6ccafaeSMatthew G Knepley ierr = PetscSortInt(faceSizeQuadHex, sortedIndices);CHKERRQ(ierr); 2650e6ccafaeSMatthew G Knepley for (iFace = 0; iFace < 6; ++iFace) { 2651e6ccafaeSMatthew G Knepley const PetscInt ii = iFace*faceSizeQuadHex; 2652e6ccafaeSMatthew G Knepley PetscInt fVertex, cVertex; 2653e6ccafaeSMatthew G Knepley 2654e6ccafaeSMatthew G Knepley if ((sortedIndices[0] == faceVerticesQuadHexSorted[ii+0]) && 2655e6ccafaeSMatthew G Knepley (sortedIndices[1] == faceVerticesQuadHexSorted[ii+1]) && 2656e6ccafaeSMatthew G Knepley (sortedIndices[2] == faceVerticesQuadHexSorted[ii+2]) && 2657e6ccafaeSMatthew G Knepley (sortedIndices[3] == faceVerticesQuadHexSorted[ii+3])) { 2658e6ccafaeSMatthew G Knepley for (fVertex = 0; fVertex < faceSizeQuadHex; ++fVertex) { 2659e6ccafaeSMatthew G Knepley for (cVertex = 0; cVertex < faceSizeQuadHex; ++cVertex) { 2660e6ccafaeSMatthew G Knepley if (indices[cVertex] == faceVerticesQuadHex[ii+fVertex]) { 2661e6ccafaeSMatthew G Knepley faceVertices[fVertex] = origVertices[cVertex]; 2662e6ccafaeSMatthew G Knepley break; 2663e6ccafaeSMatthew G Knepley } 2664e6ccafaeSMatthew G Knepley } 2665e6ccafaeSMatthew G Knepley } 2666e6ccafaeSMatthew G Knepley found = PETSC_TRUE; 2667e6ccafaeSMatthew G Knepley break; 2668e6ccafaeSMatthew G Knepley } 2669e6ccafaeSMatthew G Knepley } 2670e6ccafaeSMatthew G Knepley if (!found) SETERRQ(comm, PETSC_ERR_ARG_WRONG, "Invalid hex crossface"); 2671e6ccafaeSMatthew G Knepley if (posOriented) *posOriented = PETSC_TRUE; 2672e6ccafaeSMatthew G Knepley PetscFunctionReturn(0); 2673e6ccafaeSMatthew G Knepley } else SETERRQ(comm, PETSC_ERR_ARG_WRONG, "Unknown cell type for faceOrientation()."); 2674e6ccafaeSMatthew G Knepley if (!posOrient) { 2675e6ccafaeSMatthew G Knepley if (debug) {ierr = PetscPrintf(comm, " Reversing initial face orientation\n");CHKERRQ(ierr);} 2676e6ccafaeSMatthew G Knepley for (f = 0; f < faceSize; ++f) faceVertices[f] = origVertices[faceSize-1 - f]; 2677e6ccafaeSMatthew G Knepley } else { 2678e6ccafaeSMatthew G Knepley if (debug) {ierr = PetscPrintf(comm, " Keeping initial face orientation\n");CHKERRQ(ierr);} 2679e6ccafaeSMatthew G Knepley for (f = 0; f < faceSize; ++f) faceVertices[f] = origVertices[f]; 2680e6ccafaeSMatthew G Knepley } 2681e6ccafaeSMatthew G Knepley if (posOriented) *posOriented = posOrient; 2682e6ccafaeSMatthew G Knepley PetscFunctionReturn(0); 2683e6ccafaeSMatthew G Knepley } 2684e6ccafaeSMatthew G Knepley 2685c08575a3SMatthew G. Knepley /*@ 2686c08575a3SMatthew G. Knepley DMPlexGetOrientedFace - Given a cell and a face, as a set of vertices, return the oriented face, as a set of vertices, 2687c08575a3SMatthew G. Knepley in faceVertices. The orientation is such that the face normal points out of the cell 2688c08575a3SMatthew G. Knepley 2689c08575a3SMatthew G. Knepley Not collective 2690c08575a3SMatthew G. Knepley 2691c08575a3SMatthew G. Knepley Input Parameters: 2692c08575a3SMatthew G. Knepley + dm - The original mesh 2693c08575a3SMatthew G. Knepley . cell - The cell mesh point 2694c08575a3SMatthew G. Knepley . faceSize - The number of vertices on the face 2695c08575a3SMatthew G. Knepley . face - The face vertices 2696c08575a3SMatthew G. Knepley . numCorners - The number of vertices on the cell 2697c08575a3SMatthew G. Knepley . indices - Local numbering of face vertices in cell cone 2698c08575a3SMatthew G. Knepley - origVertices - Original face vertices 2699c08575a3SMatthew G. Knepley 2700c08575a3SMatthew G. Knepley Output Parameter: 2701c08575a3SMatthew G. Knepley + faceVertices - The face vertices properly oriented 2702c08575a3SMatthew G. Knepley - posOriented - PETSC_TRUE if the face was oriented with outward normal 2703c08575a3SMatthew G. Knepley 2704c08575a3SMatthew G. Knepley Level: developer 2705c08575a3SMatthew G. Knepley 2706c08575a3SMatthew G. Knepley .seealso: DMPlexGetCone() 2707c08575a3SMatthew G. Knepley @*/ 2708e6ccafaeSMatthew G Knepley PetscErrorCode DMPlexGetOrientedFace(DM dm, PetscInt cell, PetscInt faceSize, const PetscInt face[], PetscInt numCorners, PetscInt indices[], PetscInt origVertices[], PetscInt faceVertices[], PetscBool *posOriented) 2709e6ccafaeSMatthew G Knepley { 27100298fd71SBarry Smith const PetscInt *cone = NULL; 2711e6ccafaeSMatthew G Knepley PetscInt coneSize, v, f, v2; 2712e6ccafaeSMatthew G Knepley PetscInt oppositeVertex = -1; 2713e6ccafaeSMatthew G Knepley PetscErrorCode ierr; 2714e6ccafaeSMatthew G Knepley 2715e6ccafaeSMatthew G Knepley PetscFunctionBegin; 2716e6ccafaeSMatthew G Knepley ierr = DMPlexGetConeSize(dm, cell, &coneSize);CHKERRQ(ierr); 2717e6ccafaeSMatthew G Knepley ierr = DMPlexGetCone(dm, cell, &cone);CHKERRQ(ierr); 2718e6ccafaeSMatthew G Knepley for (v = 0, v2 = 0; v < coneSize; ++v) { 2719e6ccafaeSMatthew G Knepley PetscBool found = PETSC_FALSE; 2720e6ccafaeSMatthew G Knepley 2721e6ccafaeSMatthew G Knepley for (f = 0; f < faceSize; ++f) { 2722e6ccafaeSMatthew G Knepley if (face[f] == cone[v]) { 2723e6ccafaeSMatthew G Knepley found = PETSC_TRUE; break; 2724e6ccafaeSMatthew G Knepley } 2725e6ccafaeSMatthew G Knepley } 2726e6ccafaeSMatthew G Knepley if (found) { 2727e6ccafaeSMatthew G Knepley indices[v2] = v; 2728e6ccafaeSMatthew G Knepley origVertices[v2] = cone[v]; 2729e6ccafaeSMatthew G Knepley ++v2; 2730e6ccafaeSMatthew G Knepley } else { 2731e6ccafaeSMatthew G Knepley oppositeVertex = v; 2732e6ccafaeSMatthew G Knepley } 2733e6ccafaeSMatthew G Knepley } 2734e6ccafaeSMatthew G Knepley ierr = DMPlexGetFaceOrientation(dm, cell, numCorners, indices, oppositeVertex, origVertices, faceVertices, posOriented);CHKERRQ(ierr); 2735e6ccafaeSMatthew G Knepley PetscFunctionReturn(0); 2736e6ccafaeSMatthew G Knepley } 2737e6ccafaeSMatthew G Knepley 2738e6ccafaeSMatthew G Knepley /* 2739cd0c2139SMatthew G Knepley DMPlexInsertFace_Internal - Puts a face into the mesh 2740e6ccafaeSMatthew G Knepley 2741e6ccafaeSMatthew G Knepley Not collective 2742e6ccafaeSMatthew G Knepley 2743e6ccafaeSMatthew G Knepley Input Parameters: 2744e6ccafaeSMatthew G Knepley + dm - The DMPlex 2745e6ccafaeSMatthew G Knepley . numFaceVertex - The number of vertices in the face 2746e6ccafaeSMatthew G Knepley . faceVertices - The vertices in the face for dm 2747e6ccafaeSMatthew G Knepley . subfaceVertices - The vertices in the face for subdm 2748e6ccafaeSMatthew G Knepley . numCorners - The number of vertices in the cell 2749e6ccafaeSMatthew G Knepley . cell - A cell in dm containing the face 2750e6ccafaeSMatthew G Knepley . subcell - A cell in subdm containing the face 2751e6ccafaeSMatthew G Knepley . firstFace - First face in the mesh 2752e6ccafaeSMatthew G Knepley - newFacePoint - Next face in the mesh 2753e6ccafaeSMatthew G Knepley 2754e6ccafaeSMatthew G Knepley Output Parameters: 2755e6ccafaeSMatthew G Knepley . newFacePoint - Contains next face point number on input, updated on output 2756e6ccafaeSMatthew G Knepley 2757e6ccafaeSMatthew G Knepley Level: developer 2758e6ccafaeSMatthew G Knepley */ 2759cd0c2139SMatthew G Knepley static PetscErrorCode DMPlexInsertFace_Internal(DM dm, DM subdm, PetscInt numFaceVertices, const PetscInt faceVertices[], const PetscInt subfaceVertices[], PetscInt numCorners, PetscInt cell, PetscInt subcell, PetscInt firstFace, PetscInt *newFacePoint) 2760e6ccafaeSMatthew G Knepley { 276182f516ccSBarry Smith MPI_Comm comm; 2762e6ccafaeSMatthew G Knepley DM_Plex *submesh = (DM_Plex*) subdm->data; 2763e6ccafaeSMatthew G Knepley const PetscInt *faces; 2764e6ccafaeSMatthew G Knepley PetscInt numFaces, coneSize; 2765e6ccafaeSMatthew G Knepley PetscErrorCode ierr; 2766e6ccafaeSMatthew G Knepley 2767e6ccafaeSMatthew G Knepley PetscFunctionBegin; 276882f516ccSBarry Smith ierr = PetscObjectGetComm((PetscObject)dm,&comm);CHKERRQ(ierr); 2769e6ccafaeSMatthew G Knepley ierr = DMPlexGetConeSize(subdm, subcell, &coneSize);CHKERRQ(ierr); 2770e6ccafaeSMatthew G Knepley if (coneSize != 1) SETERRQ2(comm, PETSC_ERR_ARG_OUTOFRANGE, "Cone size of cell %d is %d != 1", cell, coneSize); 2771e6ccafaeSMatthew G Knepley #if 0 2772e6ccafaeSMatthew G Knepley /* Cannot use this because support() has not been constructed yet */ 2773e6ccafaeSMatthew G Knepley ierr = DMPlexGetJoin(subdm, numFaceVertices, subfaceVertices, &numFaces, &faces);CHKERRQ(ierr); 2774e6ccafaeSMatthew G Knepley #else 2775e6ccafaeSMatthew G Knepley { 2776e6ccafaeSMatthew G Knepley PetscInt f; 2777e6ccafaeSMatthew G Knepley 2778e6ccafaeSMatthew G Knepley numFaces = 0; 277969291d52SBarry Smith ierr = DMGetWorkArray(subdm, 1, MPIU_INT, (void **) &faces);CHKERRQ(ierr); 2780e6ccafaeSMatthew G Knepley for (f = firstFace; f < *newFacePoint; ++f) { 2781e6ccafaeSMatthew G Knepley PetscInt dof, off, d; 2782e6ccafaeSMatthew G Knepley 2783e6ccafaeSMatthew G Knepley ierr = PetscSectionGetDof(submesh->coneSection, f, &dof);CHKERRQ(ierr); 2784e6ccafaeSMatthew G Knepley ierr = PetscSectionGetOffset(submesh->coneSection, f, &off);CHKERRQ(ierr); 2785e6ccafaeSMatthew G Knepley /* Yes, I know this is quadratic, but I expect the sizes to be <5 */ 2786e6ccafaeSMatthew G Knepley for (d = 0; d < dof; ++d) { 2787e6ccafaeSMatthew G Knepley const PetscInt p = submesh->cones[off+d]; 2788e6ccafaeSMatthew G Knepley PetscInt v; 2789e6ccafaeSMatthew G Knepley 2790e6ccafaeSMatthew G Knepley for (v = 0; v < numFaceVertices; ++v) { 2791e6ccafaeSMatthew G Knepley if (subfaceVertices[v] == p) break; 2792e6ccafaeSMatthew G Knepley } 2793e6ccafaeSMatthew G Knepley if (v == numFaceVertices) break; 2794e6ccafaeSMatthew G Knepley } 2795e6ccafaeSMatthew G Knepley if (d == dof) { 2796e6ccafaeSMatthew G Knepley numFaces = 1; 2797e6ccafaeSMatthew G Knepley ((PetscInt*) faces)[0] = f; 2798e6ccafaeSMatthew G Knepley } 2799e6ccafaeSMatthew G Knepley } 2800e6ccafaeSMatthew G Knepley } 2801e6ccafaeSMatthew G Knepley #endif 2802e6ccafaeSMatthew G Knepley if (numFaces > 1) SETERRQ1(comm, PETSC_ERR_ARG_WRONG, "Vertex set had %d faces, not one", numFaces); 2803e6ccafaeSMatthew G Knepley else if (numFaces == 1) { 2804e6ccafaeSMatthew G Knepley /* Add the other cell neighbor for this face */ 2805766ab985SMatthew G. Knepley ierr = DMPlexSetCone(subdm, subcell, faces);CHKERRQ(ierr); 2806e6ccafaeSMatthew G Knepley } else { 2807e6ccafaeSMatthew G Knepley PetscInt *indices, *origVertices, *orientedVertices, *orientedSubVertices, v, ov; 2808e6ccafaeSMatthew G Knepley PetscBool posOriented; 2809e6ccafaeSMatthew G Knepley 281069291d52SBarry Smith ierr = DMGetWorkArray(subdm, 4*numFaceVertices * sizeof(PetscInt), MPIU_INT, &orientedVertices);CHKERRQ(ierr); 2811e6ccafaeSMatthew G Knepley origVertices = &orientedVertices[numFaceVertices]; 2812e6ccafaeSMatthew G Knepley indices = &orientedVertices[numFaceVertices*2]; 2813e6ccafaeSMatthew G Knepley orientedSubVertices = &orientedVertices[numFaceVertices*3]; 2814e6ccafaeSMatthew G Knepley ierr = DMPlexGetOrientedFace(dm, cell, numFaceVertices, faceVertices, numCorners, indices, origVertices, orientedVertices, &posOriented);CHKERRQ(ierr); 2815e6ccafaeSMatthew G Knepley /* TODO: I know that routine should return a permutation, not the indices */ 2816e6ccafaeSMatthew G Knepley for (v = 0; v < numFaceVertices; ++v) { 2817e6ccafaeSMatthew G Knepley const PetscInt vertex = faceVertices[v], subvertex = subfaceVertices[v]; 2818e6ccafaeSMatthew G Knepley for (ov = 0; ov < numFaceVertices; ++ov) { 2819e6ccafaeSMatthew G Knepley if (orientedVertices[ov] == vertex) { 2820e6ccafaeSMatthew G Knepley orientedSubVertices[ov] = subvertex; 2821e6ccafaeSMatthew G Knepley break; 2822e6ccafaeSMatthew G Knepley } 2823e6ccafaeSMatthew G Knepley } 2824e6ccafaeSMatthew G Knepley if (ov == numFaceVertices) SETERRQ1(comm, PETSC_ERR_PLIB, "Could not find face vertex %d in orientated set", vertex); 2825e6ccafaeSMatthew G Knepley } 2826e6ccafaeSMatthew G Knepley ierr = DMPlexSetCone(subdm, *newFacePoint, orientedSubVertices);CHKERRQ(ierr); 2827e6ccafaeSMatthew G Knepley ierr = DMPlexSetCone(subdm, subcell, newFacePoint);CHKERRQ(ierr); 282869291d52SBarry Smith ierr = DMRestoreWorkArray(subdm, 4*numFaceVertices * sizeof(PetscInt), MPIU_INT, &orientedVertices);CHKERRQ(ierr); 2829e6ccafaeSMatthew G Knepley ++(*newFacePoint); 2830e6ccafaeSMatthew G Knepley } 2831ef07cca7SMatthew G. Knepley #if 0 2832e6ccafaeSMatthew G Knepley ierr = DMPlexRestoreJoin(subdm, numFaceVertices, subfaceVertices, &numFaces, &faces);CHKERRQ(ierr); 2833ef07cca7SMatthew G. Knepley #else 283469291d52SBarry Smith ierr = DMRestoreWorkArray(subdm, 1, MPIU_INT, (void **) &faces);CHKERRQ(ierr); 2835ef07cca7SMatthew G. Knepley #endif 2836e6ccafaeSMatthew G Knepley PetscFunctionReturn(0); 2837e6ccafaeSMatthew G Knepley } 2838e6ccafaeSMatthew G Knepley 283953156dfcSMatthew G. Knepley static PetscErrorCode DMPlexCreateSubmesh_Uninterpolated(DM dm, DMLabel vertexLabel, PetscInt value, DM subdm) 2840e6ccafaeSMatthew G Knepley { 284182f516ccSBarry Smith MPI_Comm comm; 284253156dfcSMatthew G. Knepley DMLabel subpointMap; 2843efa14ee0SMatthew G Knepley IS subvertexIS, subcellIS; 2844efa14ee0SMatthew G Knepley const PetscInt *subVertices, *subCells; 2845efa14ee0SMatthew G Knepley PetscInt numSubVertices, firstSubVertex, numSubCells; 2846fed694aaSMatthew G. Knepley PetscInt *subface, maxConeSize, numSubFaces = 0, firstSubFace, newFacePoint, nFV = 0; 2847efa14ee0SMatthew G Knepley PetscInt vStart, vEnd, c, f; 2848e6ccafaeSMatthew G Knepley PetscErrorCode ierr; 2849e6ccafaeSMatthew G Knepley 2850e6ccafaeSMatthew G Knepley PetscFunctionBegin; 285182f516ccSBarry Smith ierr = PetscObjectGetComm((PetscObject)dm,&comm);CHKERRQ(ierr); 2852efa14ee0SMatthew G Knepley /* Create subpointMap which marks the submesh */ 2853d67d17b1SMatthew G. Knepley ierr = DMLabelCreate(PETSC_COMM_SELF, "subpoint_map", &subpointMap);CHKERRQ(ierr); 2854efa14ee0SMatthew G Knepley ierr = DMPlexSetSubpointMap(subdm, subpointMap);CHKERRQ(ierr); 2855efa14ee0SMatthew G Knepley ierr = DMLabelDestroy(&subpointMap);CHKERRQ(ierr); 285653156dfcSMatthew G. Knepley if (vertexLabel) {ierr = DMPlexMarkSubmesh_Uninterpolated(dm, vertexLabel, value, subpointMap, &numSubFaces, &nFV, subdm);CHKERRQ(ierr);} 2857efa14ee0SMatthew G Knepley /* Setup chart */ 2858efa14ee0SMatthew G Knepley ierr = DMLabelGetStratumSize(subpointMap, 0, &numSubVertices);CHKERRQ(ierr); 2859efa14ee0SMatthew G Knepley ierr = DMLabelGetStratumSize(subpointMap, 2, &numSubCells);CHKERRQ(ierr); 2860efa14ee0SMatthew G Knepley ierr = DMPlexSetChart(subdm, 0, numSubCells+numSubFaces+numSubVertices);CHKERRQ(ierr); 2861efa14ee0SMatthew G Knepley ierr = DMPlexSetVTKCellHeight(subdm, 1);CHKERRQ(ierr); 2862e6ccafaeSMatthew G Knepley /* Set cone sizes */ 2863e6ccafaeSMatthew G Knepley firstSubVertex = numSubCells; 2864efa14ee0SMatthew G Knepley firstSubFace = numSubCells+numSubVertices; 2865e6ccafaeSMatthew G Knepley newFacePoint = firstSubFace; 2866efa14ee0SMatthew G Knepley ierr = DMLabelGetStratumIS(subpointMap, 0, &subvertexIS);CHKERRQ(ierr); 2867efa14ee0SMatthew G Knepley if (subvertexIS) {ierr = ISGetIndices(subvertexIS, &subVertices);CHKERRQ(ierr);} 2868efa14ee0SMatthew G Knepley ierr = DMLabelGetStratumIS(subpointMap, 2, &subcellIS);CHKERRQ(ierr); 2869efa14ee0SMatthew G Knepley if (subcellIS) {ierr = ISGetIndices(subcellIS, &subCells);CHKERRQ(ierr);} 2870e6ccafaeSMatthew G Knepley for (c = 0; c < numSubCells; ++c) { 2871e6ccafaeSMatthew G Knepley ierr = DMPlexSetConeSize(subdm, c, 1);CHKERRQ(ierr); 2872e6ccafaeSMatthew G Knepley } 2873e6ccafaeSMatthew G Knepley for (f = firstSubFace; f < firstSubFace+numSubFaces; ++f) { 2874e6ccafaeSMatthew G Knepley ierr = DMPlexSetConeSize(subdm, f, nFV);CHKERRQ(ierr); 2875e6ccafaeSMatthew G Knepley } 2876e6ccafaeSMatthew G Knepley ierr = DMSetUp(subdm);CHKERRQ(ierr); 2877e6ccafaeSMatthew G Knepley /* Create face cones */ 2878efa14ee0SMatthew G Knepley ierr = DMPlexGetDepthStratum(dm, 0, &vStart, &vEnd);CHKERRQ(ierr); 28790298fd71SBarry Smith ierr = DMPlexGetMaxSizes(dm, &maxConeSize, NULL);CHKERRQ(ierr); 288069291d52SBarry Smith ierr = DMGetWorkArray(subdm, maxConeSize, MPIU_INT, (void**) &subface);CHKERRQ(ierr); 2881e6ccafaeSMatthew G Knepley for (c = 0; c < numSubCells; ++c) { 2882e6ccafaeSMatthew G Knepley const PetscInt cell = subCells[c]; 2883efa14ee0SMatthew G Knepley const PetscInt subcell = c; 28840298fd71SBarry Smith PetscInt *closure = NULL; 2885efa14ee0SMatthew G Knepley PetscInt closureSize, cl, numCorners = 0, faceSize = 0; 2886e6ccafaeSMatthew G Knepley 2887e6ccafaeSMatthew G Knepley ierr = DMPlexGetTransitiveClosure(dm, cell, PETSC_TRUE, &closureSize, &closure);CHKERRQ(ierr); 2888efa14ee0SMatthew G Knepley for (cl = 0; cl < closureSize*2; cl += 2) { 2889efa14ee0SMatthew G Knepley const PetscInt point = closure[cl]; 2890e6ccafaeSMatthew G Knepley PetscInt subVertex; 2891e6ccafaeSMatthew G Knepley 2892efa14ee0SMatthew G Knepley if ((point >= vStart) && (point < vEnd)) { 2893efa14ee0SMatthew G Knepley ++numCorners; 2894efa14ee0SMatthew G Knepley ierr = PetscFindInt(point, numSubVertices, subVertices, &subVertex);CHKERRQ(ierr); 2895efa14ee0SMatthew G Knepley if (subVertex >= 0) { 2896efa14ee0SMatthew G Knepley closure[faceSize] = point; 289765560c7fSMatthew G Knepley subface[faceSize] = firstSubVertex+subVertex; 2898e6ccafaeSMatthew G Knepley ++faceSize; 2899e6ccafaeSMatthew G Knepley } 2900e6ccafaeSMatthew G Knepley } 2901e6ccafaeSMatthew G Knepley } 2902efa14ee0SMatthew G Knepley if (faceSize > nFV) SETERRQ1(comm, PETSC_ERR_ARG_WRONG, "Invalid submesh: Too many vertices %d of an element on the surface", faceSize); 2903efa14ee0SMatthew G Knepley if (faceSize == nFV) { 2904cd0c2139SMatthew G Knepley ierr = DMPlexInsertFace_Internal(dm, subdm, faceSize, closure, subface, numCorners, cell, subcell, firstSubFace, &newFacePoint);CHKERRQ(ierr); 2905e6ccafaeSMatthew G Knepley } 290665560c7fSMatthew G Knepley ierr = DMPlexRestoreTransitiveClosure(dm, cell, PETSC_TRUE, &closureSize, &closure);CHKERRQ(ierr); 2907e6ccafaeSMatthew G Knepley } 290869291d52SBarry Smith ierr = DMRestoreWorkArray(subdm, maxConeSize, MPIU_INT, (void**) &subface);CHKERRQ(ierr); 2909e6ccafaeSMatthew G Knepley ierr = DMPlexSymmetrize(subdm);CHKERRQ(ierr); 2910e6ccafaeSMatthew G Knepley ierr = DMPlexStratify(subdm);CHKERRQ(ierr); 2911e6ccafaeSMatthew G Knepley /* Build coordinates */ 2912efa14ee0SMatthew G Knepley { 2913efa14ee0SMatthew G Knepley PetscSection coordSection, subCoordSection; 2914efa14ee0SMatthew G Knepley Vec coordinates, subCoordinates; 2915efa14ee0SMatthew G Knepley PetscScalar *coords, *subCoords; 2916285d324eSMatthew G. Knepley PetscInt numComp, coordSize, v; 291724640c55SToby Isaac const char *name; 2918efa14ee0SMatthew G Knepley 291969d8a9ceSMatthew G. Knepley ierr = DMGetCoordinateSection(dm, &coordSection);CHKERRQ(ierr); 2920e6ccafaeSMatthew G Knepley ierr = DMGetCoordinatesLocal(dm, &coordinates);CHKERRQ(ierr); 292169d8a9ceSMatthew G. Knepley ierr = DMGetCoordinateSection(subdm, &subCoordSection);CHKERRQ(ierr); 2922285d324eSMatthew G. Knepley ierr = PetscSectionSetNumFields(subCoordSection, 1);CHKERRQ(ierr); 2923285d324eSMatthew G. Knepley ierr = PetscSectionGetFieldComponents(coordSection, 0, &numComp);CHKERRQ(ierr); 2924285d324eSMatthew G. Knepley ierr = PetscSectionSetFieldComponents(subCoordSection, 0, numComp);CHKERRQ(ierr); 2925efa14ee0SMatthew G Knepley ierr = PetscSectionSetChart(subCoordSection, firstSubVertex, firstSubVertex+numSubVertices);CHKERRQ(ierr); 2926efa14ee0SMatthew G Knepley for (v = 0; v < numSubVertices; ++v) { 2927efa14ee0SMatthew G Knepley const PetscInt vertex = subVertices[v]; 2928efa14ee0SMatthew G Knepley const PetscInt subvertex = firstSubVertex+v; 2929efa14ee0SMatthew G Knepley PetscInt dof; 2930efa14ee0SMatthew G Knepley 2931efa14ee0SMatthew G Knepley ierr = PetscSectionGetDof(coordSection, vertex, &dof);CHKERRQ(ierr); 2932efa14ee0SMatthew G Knepley ierr = PetscSectionSetDof(subCoordSection, subvertex, dof);CHKERRQ(ierr); 2933285d324eSMatthew G. Knepley ierr = PetscSectionSetFieldDof(subCoordSection, subvertex, 0, dof);CHKERRQ(ierr); 2934e6ccafaeSMatthew G Knepley } 2935e6ccafaeSMatthew G Knepley ierr = PetscSectionSetUp(subCoordSection);CHKERRQ(ierr); 2936e6ccafaeSMatthew G Knepley ierr = PetscSectionGetStorageSize(subCoordSection, &coordSize);CHKERRQ(ierr); 29378b9ced59SLisandro Dalcin ierr = VecCreate(PETSC_COMM_SELF, &subCoordinates);CHKERRQ(ierr); 293824640c55SToby Isaac ierr = PetscObjectGetName((PetscObject)coordinates,&name);CHKERRQ(ierr); 293924640c55SToby Isaac ierr = PetscObjectSetName((PetscObject)subCoordinates,name);CHKERRQ(ierr); 2940e6ccafaeSMatthew G Knepley ierr = VecSetSizes(subCoordinates, coordSize, PETSC_DETERMINE);CHKERRQ(ierr); 29412eb5907fSJed Brown ierr = VecSetType(subCoordinates,VECSTANDARD);CHKERRQ(ierr); 2942830e53efSMatthew G. Knepley if (coordSize) { 2943e6ccafaeSMatthew G Knepley ierr = VecGetArray(coordinates, &coords);CHKERRQ(ierr); 2944e6ccafaeSMatthew G Knepley ierr = VecGetArray(subCoordinates, &subCoords);CHKERRQ(ierr); 2945efa14ee0SMatthew G Knepley for (v = 0; v < numSubVertices; ++v) { 2946efa14ee0SMatthew G Knepley const PetscInt vertex = subVertices[v]; 2947efa14ee0SMatthew G Knepley const PetscInt subvertex = firstSubVertex+v; 2948efa14ee0SMatthew G Knepley PetscInt dof, off, sdof, soff, d; 2949e6ccafaeSMatthew G Knepley 2950e6ccafaeSMatthew G Knepley ierr = PetscSectionGetDof(coordSection, vertex, &dof);CHKERRQ(ierr); 2951e6ccafaeSMatthew G Knepley ierr = PetscSectionGetOffset(coordSection, vertex, &off);CHKERRQ(ierr); 2952efa14ee0SMatthew G Knepley ierr = PetscSectionGetDof(subCoordSection, subvertex, &sdof);CHKERRQ(ierr); 2953efa14ee0SMatthew G Knepley ierr = PetscSectionGetOffset(subCoordSection, subvertex, &soff);CHKERRQ(ierr); 2954efa14ee0SMatthew G Knepley if (dof != sdof) SETERRQ4(comm, PETSC_ERR_PLIB, "Coordinate dimension %d on subvertex %d, vertex %d should be %d", sdof, subvertex, vertex, dof); 2955e6ccafaeSMatthew G Knepley for (d = 0; d < dof; ++d) subCoords[soff+d] = coords[off+d]; 2956e6ccafaeSMatthew G Knepley } 2957e6ccafaeSMatthew G Knepley ierr = VecRestoreArray(coordinates, &coords);CHKERRQ(ierr); 2958e6ccafaeSMatthew G Knepley ierr = VecRestoreArray(subCoordinates, &subCoords);CHKERRQ(ierr); 29593b399e24SMatthew G. Knepley } 2960e6ccafaeSMatthew G Knepley ierr = DMSetCoordinatesLocal(subdm, subCoordinates);CHKERRQ(ierr); 2961e6ccafaeSMatthew G Knepley ierr = VecDestroy(&subCoordinates);CHKERRQ(ierr); 2962e6ccafaeSMatthew G Knepley } 2963efa14ee0SMatthew G Knepley /* Cleanup */ 2964efa14ee0SMatthew G Knepley if (subvertexIS) {ierr = ISRestoreIndices(subvertexIS, &subVertices);CHKERRQ(ierr);} 2965efa14ee0SMatthew G Knepley ierr = ISDestroy(&subvertexIS);CHKERRQ(ierr); 2966efa14ee0SMatthew G Knepley if (subcellIS) {ierr = ISRestoreIndices(subcellIS, &subCells);CHKERRQ(ierr);} 2967efa14ee0SMatthew G Knepley ierr = ISDestroy(&subcellIS);CHKERRQ(ierr); 2968e6ccafaeSMatthew G Knepley PetscFunctionReturn(0); 2969e6ccafaeSMatthew G Knepley } 2970e6ccafaeSMatthew G Knepley 29713982b651SMatthew G. Knepley PETSC_STATIC_INLINE PetscInt DMPlexFilterPoint_Internal(PetscInt point, PetscInt firstSubPoint, PetscInt numSubPoints, const PetscInt subPoints[]) 29723982b651SMatthew G. Knepley { 29733982b651SMatthew G. Knepley PetscInt subPoint; 29743982b651SMatthew G. Knepley PetscErrorCode ierr; 29753982b651SMatthew G. Knepley 29763982b651SMatthew G. Knepley ierr = PetscFindInt(point, numSubPoints, subPoints, &subPoint); if (ierr < 0) return ierr; 29773982b651SMatthew G. Knepley return subPoint < 0 ? subPoint : firstSubPoint+subPoint; 29783982b651SMatthew G. Knepley } 29793982b651SMatthew G. Knepley 2980158acfadSMatthew G. Knepley static PetscErrorCode DMPlexCreateSubmeshGeneric_Interpolated(DM dm, DMLabel label, PetscInt value, PetscBool markedFaces, PetscBool isCohesive, PetscInt cellHeight, DM subdm) 2981e6ccafaeSMatthew G Knepley { 298282f516ccSBarry Smith MPI_Comm comm; 298353156dfcSMatthew G. Knepley DMLabel subpointMap; 2984efa14ee0SMatthew G Knepley IS *subpointIS; 2985efa14ee0SMatthew G Knepley const PetscInt **subpoints; 29863982b651SMatthew G. Knepley PetscInt *numSubPoints, *firstSubPoint, *coneNew, *orntNew; 29870d366550SMatthew G. Knepley PetscInt totSubPoints = 0, maxConeSize, cMax, cEnd, dim, p, d, v; 29880d366550SMatthew G. Knepley PetscMPIInt rank; 2989e6ccafaeSMatthew G Knepley PetscErrorCode ierr; 2990e6ccafaeSMatthew G Knepley 2991e6ccafaeSMatthew G Knepley PetscFunctionBegin; 299282f516ccSBarry Smith ierr = PetscObjectGetComm((PetscObject)dm,&comm);CHKERRQ(ierr); 29930d366550SMatthew G. Knepley ierr = MPI_Comm_rank(comm, &rank);CHKERRQ(ierr); 2994efa14ee0SMatthew G Knepley /* Create subpointMap which marks the submesh */ 2995d67d17b1SMatthew G. Knepley ierr = DMLabelCreate(PETSC_COMM_SELF, "subpoint_map", &subpointMap);CHKERRQ(ierr); 2996efa14ee0SMatthew G Knepley ierr = DMPlexSetSubpointMap(subdm, subpointMap);CHKERRQ(ierr); 2997bec263e5SMatthew G. Knepley if (cellHeight) { 29983982b651SMatthew G. Knepley if (isCohesive) {ierr = DMPlexMarkCohesiveSubmesh_Interpolated(dm, label, value, subpointMap, subdm);CHKERRQ(ierr);} 2999158acfadSMatthew G. Knepley else {ierr = DMPlexMarkSubmesh_Interpolated(dm, label, value, markedFaces, subpointMap, subdm);CHKERRQ(ierr);} 3000bec263e5SMatthew G. Knepley } else { 3001bec263e5SMatthew G. Knepley DMLabel depth; 3002bec263e5SMatthew G. Knepley IS pointIS; 3003bec263e5SMatthew G. Knepley const PetscInt *points; 3004bec263e5SMatthew G. Knepley PetscInt numPoints; 3005bec263e5SMatthew G. Knepley 3006bec263e5SMatthew G. Knepley ierr = DMPlexGetDepthLabel(dm, &depth);CHKERRQ(ierr); 3007bec263e5SMatthew G. Knepley ierr = DMLabelGetStratumSize(label, value, &numPoints);CHKERRQ(ierr); 3008bec263e5SMatthew G. Knepley ierr = DMLabelGetStratumIS(label, value, &pointIS);CHKERRQ(ierr); 3009bec263e5SMatthew G. Knepley ierr = ISGetIndices(pointIS, &points);CHKERRQ(ierr); 3010bec263e5SMatthew G. Knepley for (p = 0; p < numPoints; ++p) { 3011bec263e5SMatthew G. Knepley PetscInt *closure = NULL; 3012bec263e5SMatthew G. Knepley PetscInt closureSize, c, pdim; 3013bec263e5SMatthew G. Knepley 3014bec263e5SMatthew G. Knepley ierr = DMPlexGetTransitiveClosure(dm, points[p], PETSC_TRUE, &closureSize, &closure);CHKERRQ(ierr); 3015bec263e5SMatthew G. Knepley for (c = 0; c < closureSize*2; c += 2) { 3016bec263e5SMatthew G. Knepley ierr = DMLabelGetValue(depth, closure[c], &pdim);CHKERRQ(ierr); 3017bec263e5SMatthew G. Knepley ierr = DMLabelSetValue(subpointMap, closure[c], pdim);CHKERRQ(ierr); 3018bec263e5SMatthew G. Knepley } 3019bec263e5SMatthew G. Knepley ierr = DMPlexRestoreTransitiveClosure(dm, points[p], PETSC_TRUE, &closureSize, &closure);CHKERRQ(ierr); 3020bec263e5SMatthew G. Knepley } 3021bec263e5SMatthew G. Knepley ierr = ISRestoreIndices(pointIS, &points);CHKERRQ(ierr); 3022bec263e5SMatthew G. Knepley ierr = ISDestroy(&pointIS);CHKERRQ(ierr); 3023bec263e5SMatthew G. Knepley } 30240d366550SMatthew G. Knepley ierr = DMPlexGetHeightStratum(dm, 0, NULL, &cEnd);CHKERRQ(ierr); 30250d366550SMatthew G. Knepley ierr = DMPlexGetHybridBounds(dm, &cMax, NULL, NULL, NULL);CHKERRQ(ierr); 30260d366550SMatthew G. Knepley cMax = (cMax < 0) ? cEnd : cMax; 3027efa14ee0SMatthew G Knepley /* Setup chart */ 3028c73cfb54SMatthew G. Knepley ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr); 3029dcca6d9dSJed Brown ierr = PetscMalloc4(dim+1,&numSubPoints,dim+1,&firstSubPoint,dim+1,&subpointIS,dim+1,&subpoints);CHKERRQ(ierr); 3030e6ccafaeSMatthew G Knepley for (d = 0; d <= dim; ++d) { 3031e6ccafaeSMatthew G Knepley ierr = DMLabelGetStratumSize(subpointMap, d, &numSubPoints[d]);CHKERRQ(ierr); 3032e6ccafaeSMatthew G Knepley totSubPoints += numSubPoints[d]; 3033e6ccafaeSMatthew G Knepley } 3034e6ccafaeSMatthew G Knepley ierr = DMPlexSetChart(subdm, 0, totSubPoints);CHKERRQ(ierr); 3035bec263e5SMatthew G. Knepley ierr = DMPlexSetVTKCellHeight(subdm, cellHeight);CHKERRQ(ierr); 3036e6ccafaeSMatthew G Knepley /* Set cone sizes */ 3037e6ccafaeSMatthew G Knepley firstSubPoint[dim] = 0; 3038e6ccafaeSMatthew G Knepley firstSubPoint[0] = firstSubPoint[dim] + numSubPoints[dim]; 3039e6ccafaeSMatthew G Knepley if (dim > 1) {firstSubPoint[dim-1] = firstSubPoint[0] + numSubPoints[0];} 3040e6ccafaeSMatthew G Knepley if (dim > 2) {firstSubPoint[dim-2] = firstSubPoint[dim-1] + numSubPoints[dim-1];} 3041e6ccafaeSMatthew G Knepley for (d = 0; d <= dim; ++d) { 3042e6ccafaeSMatthew G Knepley ierr = DMLabelGetStratumIS(subpointMap, d, &subpointIS[d]);CHKERRQ(ierr); 30430ae02aa4SMatthew G. Knepley if (subpointIS[d]) {ierr = ISGetIndices(subpointIS[d], &subpoints[d]);CHKERRQ(ierr);} 3044e6ccafaeSMatthew G Knepley } 3045e6ccafaeSMatthew G Knepley for (d = 0; d <= dim; ++d) { 3046e6ccafaeSMatthew G Knepley for (p = 0; p < numSubPoints[d]; ++p) { 3047e6ccafaeSMatthew G Knepley const PetscInt point = subpoints[d][p]; 3048e6ccafaeSMatthew G Knepley const PetscInt subpoint = firstSubPoint[d] + p; 3049e6ccafaeSMatthew G Knepley const PetscInt *cone; 3050e6ccafaeSMatthew G Knepley PetscInt coneSize, coneSizeNew, c, val; 3051e6ccafaeSMatthew G Knepley 3052e6ccafaeSMatthew G Knepley ierr = DMPlexGetConeSize(dm, point, &coneSize);CHKERRQ(ierr); 3053e6ccafaeSMatthew G Knepley ierr = DMPlexSetConeSize(subdm, subpoint, coneSize);CHKERRQ(ierr); 3054bec263e5SMatthew G. Knepley if (cellHeight && (d == dim)) { 3055e6ccafaeSMatthew G Knepley ierr = DMPlexGetCone(dm, point, &cone);CHKERRQ(ierr); 3056e6ccafaeSMatthew G Knepley for (c = 0, coneSizeNew = 0; c < coneSize; ++c) { 3057e6ccafaeSMatthew G Knepley ierr = DMLabelGetValue(subpointMap, cone[c], &val);CHKERRQ(ierr); 3058e6ccafaeSMatthew G Knepley if (val >= 0) coneSizeNew++; 3059e6ccafaeSMatthew G Knepley } 3060e6ccafaeSMatthew G Knepley ierr = DMPlexSetConeSize(subdm, subpoint, coneSizeNew);CHKERRQ(ierr); 3061e6ccafaeSMatthew G Knepley } 3062e6ccafaeSMatthew G Knepley } 3063e6ccafaeSMatthew G Knepley } 3064d67d17b1SMatthew G. Knepley ierr = DMLabelDestroy(&subpointMap);CHKERRQ(ierr); 3065e6ccafaeSMatthew G Knepley ierr = DMSetUp(subdm);CHKERRQ(ierr); 3066e6ccafaeSMatthew G Knepley /* Set cones */ 30670298fd71SBarry Smith ierr = DMPlexGetMaxSizes(dm, &maxConeSize, NULL);CHKERRQ(ierr); 30683982b651SMatthew G. Knepley ierr = PetscMalloc2(maxConeSize,&coneNew,maxConeSize,&orntNew);CHKERRQ(ierr); 3069e6ccafaeSMatthew G Knepley for (d = 0; d <= dim; ++d) { 3070e6ccafaeSMatthew G Knepley for (p = 0; p < numSubPoints[d]; ++p) { 3071e6ccafaeSMatthew G Knepley const PetscInt point = subpoints[d][p]; 3072e6ccafaeSMatthew G Knepley const PetscInt subpoint = firstSubPoint[d] + p; 30730e49e2e2SMatthew G. Knepley const PetscInt *cone, *ornt; 30740d366550SMatthew G. Knepley PetscInt coneSize, subconeSize, coneSizeNew, c, subc, fornt = 0; 3075e6ccafaeSMatthew G Knepley 30760d366550SMatthew G. Knepley if (d == dim-1) { 30770d366550SMatthew G. Knepley const PetscInt *support, *cone, *ornt; 30780d366550SMatthew G. Knepley PetscInt supportSize, coneSize, s, subc; 30790d366550SMatthew G. Knepley 30800d366550SMatthew G. Knepley ierr = DMPlexGetSupport(dm, point, &support);CHKERRQ(ierr); 30810d366550SMatthew G. Knepley ierr = DMPlexGetSupportSize(dm, point, &supportSize);CHKERRQ(ierr); 30820d366550SMatthew G. Knepley for (s = 0; s < supportSize; ++s) { 30830d366550SMatthew G. Knepley if ((support[s] < cMax) || (support[s] >= cEnd)) continue; 30840d366550SMatthew G. Knepley ierr = PetscFindInt(support[s], numSubPoints[d+1], subpoints[d+1], &subc);CHKERRQ(ierr); 30850d366550SMatthew G. Knepley if (subc >= 0) { 30860d366550SMatthew G. Knepley const PetscInt ccell = subpoints[d+1][subc]; 30870d366550SMatthew G. Knepley 30887f79407eSBarry Smith ierr = DMPlexGetCone(dm, ccell, &cone);CHKERRQ(ierr); 30897f79407eSBarry Smith ierr = DMPlexGetConeSize(dm, ccell, &coneSize);CHKERRQ(ierr); 30907f79407eSBarry Smith ierr = DMPlexGetConeOrientation(dm, ccell, &ornt);CHKERRQ(ierr); 30910d366550SMatthew G. Knepley for (c = 0; c < coneSize; ++c) { 30920d366550SMatthew G. Knepley if (cone[c] == point) { 30930d366550SMatthew G. Knepley fornt = ornt[c]; 30940d366550SMatthew G. Knepley break; 30950d366550SMatthew G. Knepley } 30960d366550SMatthew G. Knepley } 30970d366550SMatthew G. Knepley break; 30980d366550SMatthew G. Knepley } 30990d366550SMatthew G. Knepley } 31000d366550SMatthew G. Knepley } 3101e6ccafaeSMatthew G Knepley ierr = DMPlexGetConeSize(dm, point, &coneSize);CHKERRQ(ierr); 3102e6ccafaeSMatthew G Knepley ierr = DMPlexGetConeSize(subdm, subpoint, &subconeSize);CHKERRQ(ierr); 3103e6ccafaeSMatthew G Knepley ierr = DMPlexGetCone(dm, point, &cone);CHKERRQ(ierr); 31040e49e2e2SMatthew G. Knepley ierr = DMPlexGetConeOrientation(dm, point, &ornt);CHKERRQ(ierr); 3105e6ccafaeSMatthew G Knepley for (c = 0, coneSizeNew = 0; c < coneSize; ++c) { 3106e6ccafaeSMatthew G Knepley ierr = PetscFindInt(cone[c], numSubPoints[d-1], subpoints[d-1], &subc);CHKERRQ(ierr); 310701a2673eSMatthew G. Knepley if (subc >= 0) { 310801a2673eSMatthew G. Knepley coneNew[coneSizeNew] = firstSubPoint[d-1] + subc; 31093982b651SMatthew G. Knepley orntNew[coneSizeNew] = ornt[c]; 311001a2673eSMatthew G. Knepley ++coneSizeNew; 311101a2673eSMatthew G. Knepley } 3112e6ccafaeSMatthew G Knepley } 3113e6ccafaeSMatthew G Knepley if (coneSizeNew != subconeSize) SETERRQ2(comm, PETSC_ERR_PLIB, "Number of cone points located %d does not match subcone size %d", coneSizeNew, subconeSize); 31140d366550SMatthew G. Knepley if (fornt < 0) { 31150d366550SMatthew G. Knepley /* This should be replaced by a call to DMPlexReverseCell() */ 31160d366550SMatthew G. Knepley #if 0 3117a129c400SMatthew G. Knepley ierr = DMPlexReverseCell(subdm, subpoint);CHKERRQ(ierr); 3118a129c400SMatthew G. Knepley #else 3119c0b40891SMatthew G. Knepley for (c = 0; c < coneSizeNew/2 + coneSizeNew%2; ++c) { 3120a129c400SMatthew G. Knepley PetscInt faceSize, tmp; 31210d366550SMatthew G. Knepley 31220d366550SMatthew G. Knepley tmp = coneNew[c]; 31230d366550SMatthew G. Knepley coneNew[c] = coneNew[coneSizeNew-1-c]; 31240d366550SMatthew G. Knepley coneNew[coneSizeNew-1-c] = tmp; 3125a129c400SMatthew G. Knepley ierr = DMPlexGetConeSize(dm, cone[c], &faceSize);CHKERRQ(ierr); 3126a129c400SMatthew G. Knepley tmp = orntNew[c] >= 0 ? -(faceSize-orntNew[c]) : faceSize+orntNew[c]; 3127a129c400SMatthew G. Knepley orntNew[c] = orntNew[coneSizeNew-1-c] >= 0 ? -(faceSize-orntNew[coneSizeNew-1-c]) : faceSize+orntNew[coneSizeNew-1-c]; 31280d366550SMatthew G. Knepley orntNew[coneSizeNew-1-c] = tmp; 31290d366550SMatthew G. Knepley } 31300d366550SMatthew G. Knepley } 3131e6ccafaeSMatthew G Knepley ierr = DMPlexSetCone(subdm, subpoint, coneNew);CHKERRQ(ierr); 31323982b651SMatthew G. Knepley ierr = DMPlexSetConeOrientation(subdm, subpoint, orntNew);CHKERRQ(ierr); 3133a129c400SMatthew G. Knepley #endif 3134e6ccafaeSMatthew G Knepley } 3135e6ccafaeSMatthew G Knepley } 31363982b651SMatthew G. Knepley ierr = PetscFree2(coneNew,orntNew);CHKERRQ(ierr); 3137e6ccafaeSMatthew G Knepley ierr = DMPlexSymmetrize(subdm);CHKERRQ(ierr); 3138e6ccafaeSMatthew G Knepley ierr = DMPlexStratify(subdm);CHKERRQ(ierr); 3139e6ccafaeSMatthew G Knepley /* Build coordinates */ 3140e6ccafaeSMatthew G Knepley { 3141e6ccafaeSMatthew G Knepley PetscSection coordSection, subCoordSection; 3142e6ccafaeSMatthew G Knepley Vec coordinates, subCoordinates; 3143e6ccafaeSMatthew G Knepley PetscScalar *coords, *subCoords; 3144c0e8cf5fSMatthew G. Knepley PetscInt cdim, numComp, coordSize; 314524640c55SToby Isaac const char *name; 3146e6ccafaeSMatthew G Knepley 3147c0e8cf5fSMatthew G. Knepley ierr = DMGetCoordinateDim(dm, &cdim);CHKERRQ(ierr); 314869d8a9ceSMatthew G. Knepley ierr = DMGetCoordinateSection(dm, &coordSection);CHKERRQ(ierr); 3149e6ccafaeSMatthew G Knepley ierr = DMGetCoordinatesLocal(dm, &coordinates);CHKERRQ(ierr); 315069d8a9ceSMatthew G. Knepley ierr = DMGetCoordinateSection(subdm, &subCoordSection);CHKERRQ(ierr); 3151285d324eSMatthew G. Knepley ierr = PetscSectionSetNumFields(subCoordSection, 1);CHKERRQ(ierr); 3152285d324eSMatthew G. Knepley ierr = PetscSectionGetFieldComponents(coordSection, 0, &numComp);CHKERRQ(ierr); 3153285d324eSMatthew G. Knepley ierr = PetscSectionSetFieldComponents(subCoordSection, 0, numComp);CHKERRQ(ierr); 3154e6ccafaeSMatthew G Knepley ierr = PetscSectionSetChart(subCoordSection, firstSubPoint[0], firstSubPoint[0]+numSubPoints[0]);CHKERRQ(ierr); 3155e6ccafaeSMatthew G Knepley for (v = 0; v < numSubPoints[0]; ++v) { 3156e6ccafaeSMatthew G Knepley const PetscInt vertex = subpoints[0][v]; 3157e6ccafaeSMatthew G Knepley const PetscInt subvertex = firstSubPoint[0]+v; 3158e6ccafaeSMatthew G Knepley PetscInt dof; 3159e6ccafaeSMatthew G Knepley 3160e6ccafaeSMatthew G Knepley ierr = PetscSectionGetDof(coordSection, vertex, &dof);CHKERRQ(ierr); 3161e6ccafaeSMatthew G Knepley ierr = PetscSectionSetDof(subCoordSection, subvertex, dof);CHKERRQ(ierr); 3162285d324eSMatthew G. Knepley ierr = PetscSectionSetFieldDof(subCoordSection, subvertex, 0, dof);CHKERRQ(ierr); 3163e6ccafaeSMatthew G Knepley } 3164e6ccafaeSMatthew G Knepley ierr = PetscSectionSetUp(subCoordSection);CHKERRQ(ierr); 3165e6ccafaeSMatthew G Knepley ierr = PetscSectionGetStorageSize(subCoordSection, &coordSize);CHKERRQ(ierr); 31668b9ced59SLisandro Dalcin ierr = VecCreate(PETSC_COMM_SELF, &subCoordinates);CHKERRQ(ierr); 316724640c55SToby Isaac ierr = PetscObjectGetName((PetscObject)coordinates,&name);CHKERRQ(ierr); 316824640c55SToby Isaac ierr = PetscObjectSetName((PetscObject)subCoordinates,name);CHKERRQ(ierr); 3169e6ccafaeSMatthew G Knepley ierr = VecSetSizes(subCoordinates, coordSize, PETSC_DETERMINE);CHKERRQ(ierr); 3170c0e8cf5fSMatthew G. Knepley ierr = VecSetBlockSize(subCoordinates, cdim);CHKERRQ(ierr); 31712eb5907fSJed Brown ierr = VecSetType(subCoordinates,VECSTANDARD);CHKERRQ(ierr); 3172e6ccafaeSMatthew G Knepley ierr = VecGetArray(coordinates, &coords);CHKERRQ(ierr); 3173e6ccafaeSMatthew G Knepley ierr = VecGetArray(subCoordinates, &subCoords);CHKERRQ(ierr); 3174e6ccafaeSMatthew G Knepley for (v = 0; v < numSubPoints[0]; ++v) { 3175e6ccafaeSMatthew G Knepley const PetscInt vertex = subpoints[0][v]; 3176e6ccafaeSMatthew G Knepley const PetscInt subvertex = firstSubPoint[0]+v; 3177e6ccafaeSMatthew G Knepley PetscInt dof, off, sdof, soff, d; 3178e6ccafaeSMatthew G Knepley 3179e6ccafaeSMatthew G Knepley ierr = PetscSectionGetDof(coordSection, vertex, &dof);CHKERRQ(ierr); 3180e6ccafaeSMatthew G Knepley ierr = PetscSectionGetOffset(coordSection, vertex, &off);CHKERRQ(ierr); 3181e6ccafaeSMatthew G Knepley ierr = PetscSectionGetDof(subCoordSection, subvertex, &sdof);CHKERRQ(ierr); 3182e6ccafaeSMatthew G Knepley ierr = PetscSectionGetOffset(subCoordSection, subvertex, &soff);CHKERRQ(ierr); 3183e6ccafaeSMatthew G Knepley if (dof != sdof) SETERRQ4(comm, PETSC_ERR_PLIB, "Coordinate dimension %d on subvertex %d, vertex %d should be %d", sdof, subvertex, vertex, dof); 3184efa14ee0SMatthew G Knepley for (d = 0; d < dof; ++d) subCoords[soff+d] = coords[off+d]; 3185e6ccafaeSMatthew G Knepley } 3186e6ccafaeSMatthew G Knepley ierr = VecRestoreArray(coordinates, &coords);CHKERRQ(ierr); 3187e6ccafaeSMatthew G Knepley ierr = VecRestoreArray(subCoordinates, &subCoords);CHKERRQ(ierr); 3188e6ccafaeSMatthew G Knepley ierr = DMSetCoordinatesLocal(subdm, subCoordinates);CHKERRQ(ierr); 3189e6ccafaeSMatthew G Knepley ierr = VecDestroy(&subCoordinates);CHKERRQ(ierr); 3190e6ccafaeSMatthew G Knepley } 31913982b651SMatthew G. Knepley /* Build SF: We need this complexity because subpoints might not be selected on the owning process */ 31923982b651SMatthew G. Knepley { 31933982b651SMatthew G. Knepley PetscSF sfPoint, sfPointSub; 31943982b651SMatthew G. Knepley IS subpIS; 31953982b651SMatthew G. Knepley const PetscSFNode *remotePoints; 31963982b651SMatthew G. Knepley PetscSFNode *sremotePoints, *newLocalPoints, *newOwners; 31973982b651SMatthew G. Knepley const PetscInt *localPoints, *subpoints; 31983982b651SMatthew G. Knepley PetscInt *slocalPoints; 31993982b651SMatthew G. Knepley PetscInt numRoots, numLeaves, numSubpoints = 0, numSubroots, numSubleaves = 0, l, sl, ll, pStart, pEnd, p; 32003982b651SMatthew G. Knepley PetscMPIInt rank; 32013982b651SMatthew G. Knepley 32023982b651SMatthew G. Knepley ierr = MPI_Comm_rank(PetscObjectComm((PetscObject) dm), &rank);CHKERRQ(ierr); 32033982b651SMatthew G. Knepley ierr = DMGetPointSF(dm, &sfPoint);CHKERRQ(ierr); 32043982b651SMatthew G. Knepley ierr = DMGetPointSF(subdm, &sfPointSub);CHKERRQ(ierr); 32053982b651SMatthew G. Knepley ierr = DMPlexGetChart(dm, &pStart, &pEnd);CHKERRQ(ierr); 32063982b651SMatthew G. Knepley ierr = DMPlexGetChart(subdm, NULL, &numSubroots);CHKERRQ(ierr); 32073982b651SMatthew G. Knepley ierr = DMPlexCreateSubpointIS(subdm, &subpIS);CHKERRQ(ierr); 32083982b651SMatthew G. Knepley if (subpIS) { 32093982b651SMatthew G. Knepley ierr = ISGetIndices(subpIS, &subpoints);CHKERRQ(ierr); 32103982b651SMatthew G. Knepley ierr = ISGetLocalSize(subpIS, &numSubpoints);CHKERRQ(ierr); 32113982b651SMatthew G. Knepley } 32123982b651SMatthew G. Knepley ierr = PetscSFGetGraph(sfPoint, &numRoots, &numLeaves, &localPoints, &remotePoints);CHKERRQ(ierr); 32133982b651SMatthew G. Knepley if (numRoots >= 0) { 32143982b651SMatthew G. Knepley ierr = PetscMalloc2(pEnd-pStart,&newLocalPoints,numRoots,&newOwners);CHKERRQ(ierr); 32153982b651SMatthew G. Knepley for (p = 0; p < pEnd-pStart; ++p) { 32163982b651SMatthew G. Knepley newLocalPoints[p].rank = -2; 32173982b651SMatthew G. Knepley newLocalPoints[p].index = -2; 32183982b651SMatthew G. Knepley } 32193982b651SMatthew G. Knepley /* Set subleaves */ 32203982b651SMatthew G. Knepley for (l = 0; l < numLeaves; ++l) { 32213982b651SMatthew G. Knepley const PetscInt point = localPoints[l]; 32223982b651SMatthew G. Knepley const PetscInt subpoint = DMPlexFilterPoint_Internal(point, 0, numSubpoints, subpoints); 32233982b651SMatthew G. Knepley 32243982b651SMatthew G. Knepley if (subpoint < 0) continue; 32253982b651SMatthew G. Knepley newLocalPoints[point-pStart].rank = rank; 32263982b651SMatthew G. Knepley newLocalPoints[point-pStart].index = subpoint; 32273982b651SMatthew G. Knepley ++numSubleaves; 32283982b651SMatthew G. Knepley } 32293982b651SMatthew G. Knepley /* Must put in owned subpoints */ 32303982b651SMatthew G. Knepley for (p = pStart; p < pEnd; ++p) { 32313982b651SMatthew G. Knepley const PetscInt subpoint = DMPlexFilterPoint_Internal(p, 0, numSubpoints, subpoints); 32323982b651SMatthew G. Knepley 32333982b651SMatthew G. Knepley if (subpoint < 0) { 32343982b651SMatthew G. Knepley newOwners[p-pStart].rank = -3; 32353982b651SMatthew G. Knepley newOwners[p-pStart].index = -3; 32363982b651SMatthew G. Knepley } else { 32373982b651SMatthew G. Knepley newOwners[p-pStart].rank = rank; 32383982b651SMatthew G. Knepley newOwners[p-pStart].index = subpoint; 32393982b651SMatthew G. Knepley } 32403982b651SMatthew G. Knepley } 32413982b651SMatthew G. Knepley ierr = PetscSFReduceBegin(sfPoint, MPIU_2INT, newLocalPoints, newOwners, MPI_MAXLOC);CHKERRQ(ierr); 32423982b651SMatthew G. Knepley ierr = PetscSFReduceEnd(sfPoint, MPIU_2INT, newLocalPoints, newOwners, MPI_MAXLOC);CHKERRQ(ierr); 32433982b651SMatthew G. Knepley ierr = PetscSFBcastBegin(sfPoint, MPIU_2INT, newOwners, newLocalPoints);CHKERRQ(ierr); 32443982b651SMatthew G. Knepley ierr = PetscSFBcastEnd(sfPoint, MPIU_2INT, newOwners, newLocalPoints);CHKERRQ(ierr); 32453982b651SMatthew G. Knepley ierr = PetscMalloc1(numSubleaves, &slocalPoints);CHKERRQ(ierr); 32463982b651SMatthew G. Knepley ierr = PetscMalloc1(numSubleaves, &sremotePoints);CHKERRQ(ierr); 32473982b651SMatthew G. Knepley for (l = 0, sl = 0, ll = 0; l < numLeaves; ++l) { 32483982b651SMatthew G. Knepley const PetscInt point = localPoints[l]; 32493982b651SMatthew G. Knepley const PetscInt subpoint = DMPlexFilterPoint_Internal(point, 0, numSubpoints, subpoints); 32503982b651SMatthew G. Knepley 32513982b651SMatthew G. Knepley if (subpoint < 0) continue; 32523982b651SMatthew G. Knepley if (newLocalPoints[point].rank == rank) {++ll; continue;} 32533982b651SMatthew G. Knepley slocalPoints[sl] = subpoint; 32543982b651SMatthew G. Knepley sremotePoints[sl].rank = newLocalPoints[point].rank; 32553982b651SMatthew G. Knepley sremotePoints[sl].index = newLocalPoints[point].index; 32563982b651SMatthew G. Knepley if (sremotePoints[sl].rank < 0) SETERRQ1(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid remote rank for local point %d", point); 32573982b651SMatthew G. Knepley if (sremotePoints[sl].index < 0) SETERRQ1(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid remote subpoint for local point %d", point); 32583982b651SMatthew G. Knepley ++sl; 32593982b651SMatthew G. Knepley } 32603982b651SMatthew G. Knepley if (sl + ll != numSubleaves) SETERRQ3(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Mismatch in number of subleaves %d + %d != %d", sl, ll, numSubleaves); 32613982b651SMatthew G. Knepley ierr = PetscFree2(newLocalPoints,newOwners);CHKERRQ(ierr); 32623982b651SMatthew G. Knepley ierr = PetscSFSetGraph(sfPointSub, numSubroots, sl, slocalPoints, PETSC_OWN_POINTER, sremotePoints, PETSC_OWN_POINTER);CHKERRQ(ierr); 32633982b651SMatthew G. Knepley } 32643982b651SMatthew G. Knepley if (subpIS) { 32653982b651SMatthew G. Knepley ierr = ISRestoreIndices(subpIS, &subpoints);CHKERRQ(ierr); 32663982b651SMatthew G. Knepley ierr = ISDestroy(&subpIS);CHKERRQ(ierr); 32673982b651SMatthew G. Knepley } 32683982b651SMatthew G. Knepley } 3269efa14ee0SMatthew G Knepley /* Cleanup */ 3270e6ccafaeSMatthew G Knepley for (d = 0; d <= dim; ++d) { 32710ae02aa4SMatthew G. Knepley if (subpointIS[d]) {ierr = ISRestoreIndices(subpointIS[d], &subpoints[d]);CHKERRQ(ierr);} 3272e6ccafaeSMatthew G Knepley ierr = ISDestroy(&subpointIS[d]);CHKERRQ(ierr); 3273e6ccafaeSMatthew G Knepley } 3274efa14ee0SMatthew G Knepley ierr = PetscFree4(numSubPoints,firstSubPoint,subpointIS,subpoints);CHKERRQ(ierr); 3275e6ccafaeSMatthew G Knepley PetscFunctionReturn(0); 3276e6ccafaeSMatthew G Knepley } 3277e6ccafaeSMatthew G Knepley 3278158acfadSMatthew G. Knepley static PetscErrorCode DMPlexCreateSubmesh_Interpolated(DM dm, DMLabel vertexLabel, PetscInt value, PetscBool markedFaces, DM subdm) 32793982b651SMatthew G. Knepley { 32803982b651SMatthew G. Knepley PetscErrorCode ierr; 32813982b651SMatthew G. Knepley 32823982b651SMatthew G. Knepley PetscFunctionBegin; 3283158acfadSMatthew G. Knepley ierr = DMPlexCreateSubmeshGeneric_Interpolated(dm, vertexLabel, value, markedFaces, PETSC_FALSE, 1, subdm);CHKERRQ(ierr); 32843982b651SMatthew G. Knepley PetscFunctionReturn(0); 32853982b651SMatthew G. Knepley } 32863982b651SMatthew G. Knepley 3287d0fa310fSMatthew G. Knepley /*@ 3288e6ccafaeSMatthew G Knepley DMPlexCreateSubmesh - Extract a hypersurface from the mesh using vertices defined by a label 3289e6ccafaeSMatthew G Knepley 3290e6ccafaeSMatthew G Knepley Input Parameters: 3291e6ccafaeSMatthew G Knepley + dm - The original mesh 3292158acfadSMatthew G. Knepley . vertexLabel - The DMLabel marking points contained in the surface 3293158acfadSMatthew G. Knepley . value - The label value to use 3294158acfadSMatthew G. Knepley - markedFaces - PETSC_TRUE if surface faces are marked in addition to vertices, PETSC_FALSE if only vertices are marked 3295e6ccafaeSMatthew G Knepley 3296e6ccafaeSMatthew G Knepley Output Parameter: 3297e6ccafaeSMatthew G Knepley . subdm - The surface mesh 3298e6ccafaeSMatthew G Knepley 3299e6ccafaeSMatthew G Knepley Note: This function produces a DMLabel mapping original points in the submesh to their depth. This can be obtained using DMPlexGetSubpointMap(). 3300e6ccafaeSMatthew G Knepley 3301e6ccafaeSMatthew G Knepley Level: developer 3302e6ccafaeSMatthew G Knepley 3303c58f1c22SToby Isaac .seealso: DMPlexGetSubpointMap(), DMGetLabel(), DMLabelSetValue() 3304830e53efSMatthew G. Knepley @*/ 3305158acfadSMatthew G. Knepley PetscErrorCode DMPlexCreateSubmesh(DM dm, DMLabel vertexLabel, PetscInt value, PetscBool markedFaces, DM *subdm) 3306e6ccafaeSMatthew G Knepley { 3307827c4036SVaclav Hapla DMPlexInterpolatedFlag interpolated; 3308827c4036SVaclav Hapla PetscInt dim, cdim; 3309e6ccafaeSMatthew G Knepley PetscErrorCode ierr; 3310e6ccafaeSMatthew G Knepley 3311e6ccafaeSMatthew G Knepley PetscFunctionBegin; 3312e6ccafaeSMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 3313766ab985SMatthew G. Knepley PetscValidPointer(subdm, 3); 3314c73cfb54SMatthew G. Knepley ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr); 331582f516ccSBarry Smith ierr = DMCreate(PetscObjectComm((PetscObject)dm), subdm);CHKERRQ(ierr); 3316e6ccafaeSMatthew G Knepley ierr = DMSetType(*subdm, DMPLEX);CHKERRQ(ierr); 3317c73cfb54SMatthew G. Knepley ierr = DMSetDimension(*subdm, dim-1);CHKERRQ(ierr); 3318dd2763adSMatthew G. Knepley ierr = DMGetCoordinateDim(dm, &cdim);CHKERRQ(ierr); 3319dd2763adSMatthew G. Knepley ierr = DMSetCoordinateDim(*subdm, cdim);CHKERRQ(ierr); 3320827c4036SVaclav Hapla ierr = DMPlexIsInterpolated(dm, &interpolated);CHKERRQ(ierr); 3321827c4036SVaclav Hapla if (interpolated == DMPLEX_INTERPOLATED_PARTIAL) SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Not for partially interpolated meshes"); 3322827c4036SVaclav Hapla if (interpolated) { 3323158acfadSMatthew G. Knepley ierr = DMPlexCreateSubmesh_Interpolated(dm, vertexLabel, value, markedFaces, *subdm);CHKERRQ(ierr); 3324e6ccafaeSMatthew G Knepley } else { 3325830e53efSMatthew G. Knepley ierr = DMPlexCreateSubmesh_Uninterpolated(dm, vertexLabel, value, *subdm);CHKERRQ(ierr); 3326e6ccafaeSMatthew G Knepley } 3327e6ccafaeSMatthew G Knepley PetscFunctionReturn(0); 3328e6ccafaeSMatthew G Knepley } 3329e6ccafaeSMatthew G Knepley 333027c04023SMatthew G. Knepley static PetscErrorCode DMPlexCreateCohesiveSubmesh_Uninterpolated(DM dm, PetscBool hasLagrange, const char label[], PetscInt value, DM subdm) 3331766ab985SMatthew G. Knepley { 3332766ab985SMatthew G. Knepley MPI_Comm comm; 3333766ab985SMatthew G. Knepley DMLabel subpointMap; 3334766ab985SMatthew G. Knepley IS subvertexIS; 3335766ab985SMatthew G. Knepley const PetscInt *subVertices; 3336fed694aaSMatthew G. Knepley PetscInt numSubVertices, firstSubVertex, numSubCells, *subCells = NULL; 3337766ab985SMatthew G. Knepley PetscInt *subface, maxConeSize, numSubFaces, firstSubFace, newFacePoint, nFV; 333887feddfdSMatthew G. Knepley PetscInt cMax, c, f; 3339766ab985SMatthew G. Knepley PetscErrorCode ierr; 3340766ab985SMatthew G. Knepley 3341766ab985SMatthew G. Knepley PetscFunctionBegin; 3342766ab985SMatthew G. Knepley ierr = PetscObjectGetComm((PetscObject)dm, &comm);CHKERRQ(ierr); 3343766ab985SMatthew G. Knepley /* Create subpointMap which marks the submesh */ 3344d67d17b1SMatthew G. Knepley ierr = DMLabelCreate(PETSC_COMM_SELF, "subpoint_map", &subpointMap);CHKERRQ(ierr); 3345766ab985SMatthew G. Knepley ierr = DMPlexSetSubpointMap(subdm, subpointMap);CHKERRQ(ierr); 3346766ab985SMatthew G. Knepley ierr = DMLabelDestroy(&subpointMap);CHKERRQ(ierr); 334727c04023SMatthew G. Knepley ierr = DMPlexMarkCohesiveSubmesh_Uninterpolated(dm, hasLagrange, label, value, subpointMap, &numSubFaces, &nFV, &subCells, subdm);CHKERRQ(ierr); 3348766ab985SMatthew G. Knepley /* Setup chart */ 3349766ab985SMatthew G. Knepley ierr = DMLabelGetStratumSize(subpointMap, 0, &numSubVertices);CHKERRQ(ierr); 3350766ab985SMatthew G. Knepley ierr = DMLabelGetStratumSize(subpointMap, 2, &numSubCells);CHKERRQ(ierr); 3351766ab985SMatthew G. Knepley ierr = DMPlexSetChart(subdm, 0, numSubCells+numSubFaces+numSubVertices);CHKERRQ(ierr); 3352766ab985SMatthew G. Knepley ierr = DMPlexSetVTKCellHeight(subdm, 1);CHKERRQ(ierr); 3353766ab985SMatthew G. Knepley /* Set cone sizes */ 3354766ab985SMatthew G. Knepley firstSubVertex = numSubCells; 3355766ab985SMatthew G. Knepley firstSubFace = numSubCells+numSubVertices; 3356766ab985SMatthew G. Knepley newFacePoint = firstSubFace; 3357766ab985SMatthew G. Knepley ierr = DMLabelGetStratumIS(subpointMap, 0, &subvertexIS);CHKERRQ(ierr); 3358766ab985SMatthew G. Knepley if (subvertexIS) {ierr = ISGetIndices(subvertexIS, &subVertices);CHKERRQ(ierr);} 3359766ab985SMatthew G. Knepley for (c = 0; c < numSubCells; ++c) { 3360766ab985SMatthew G. Knepley ierr = DMPlexSetConeSize(subdm, c, 1);CHKERRQ(ierr); 3361766ab985SMatthew G. Knepley } 3362766ab985SMatthew G. Knepley for (f = firstSubFace; f < firstSubFace+numSubFaces; ++f) { 3363766ab985SMatthew G. Knepley ierr = DMPlexSetConeSize(subdm, f, nFV);CHKERRQ(ierr); 3364766ab985SMatthew G. Knepley } 3365766ab985SMatthew G. Knepley ierr = DMSetUp(subdm);CHKERRQ(ierr); 3366766ab985SMatthew G. Knepley /* Create face cones */ 3367766ab985SMatthew G. Knepley ierr = DMPlexGetMaxSizes(dm, &maxConeSize, NULL);CHKERRQ(ierr); 336887feddfdSMatthew G. Knepley ierr = DMPlexGetHybridBounds(dm, &cMax, NULL, NULL, NULL);CHKERRQ(ierr); 336969291d52SBarry Smith ierr = DMGetWorkArray(subdm, maxConeSize, MPIU_INT, (void**) &subface);CHKERRQ(ierr); 3370766ab985SMatthew G. Knepley for (c = 0; c < numSubCells; ++c) { 3371766ab985SMatthew G. Knepley const PetscInt cell = subCells[c]; 3372766ab985SMatthew G. Knepley const PetscInt subcell = c; 337387feddfdSMatthew G. Knepley const PetscInt *cone, *cells; 337487feddfdSMatthew G. Knepley PetscInt numCells, subVertex, p, v; 3375766ab985SMatthew G. Knepley 337687feddfdSMatthew G. Knepley if (cell < cMax) continue; 337787feddfdSMatthew G. Knepley ierr = DMPlexGetCone(dm, cell, &cone);CHKERRQ(ierr); 337887feddfdSMatthew G. Knepley for (v = 0; v < nFV; ++v) { 337987feddfdSMatthew G. Knepley ierr = PetscFindInt(cone[v], numSubVertices, subVertices, &subVertex);CHKERRQ(ierr); 338087feddfdSMatthew G. Knepley subface[v] = firstSubVertex+subVertex; 338187feddfdSMatthew G. Knepley } 338287feddfdSMatthew G. Knepley ierr = DMPlexSetCone(subdm, newFacePoint, subface);CHKERRQ(ierr); 338387feddfdSMatthew G. Knepley ierr = DMPlexSetCone(subdm, subcell, &newFacePoint);CHKERRQ(ierr); 338487feddfdSMatthew G. Knepley ierr = DMPlexGetJoin(dm, nFV, cone, &numCells, &cells);CHKERRQ(ierr); 338527234c99SMatthew G. Knepley /* Not true in parallel 338627234c99SMatthew G. Knepley if (numCells != 2) SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Cohesive cells should separate two cells"); */ 338787feddfdSMatthew G. Knepley for (p = 0; p < numCells; ++p) { 338887feddfdSMatthew G. Knepley PetscInt negsubcell; 3389766ab985SMatthew G. Knepley 339087feddfdSMatthew G. Knepley if (cells[p] >= cMax) continue; 339187feddfdSMatthew G. Knepley /* I know this is a crap search */ 339287feddfdSMatthew G. Knepley for (negsubcell = 0; negsubcell < numSubCells; ++negsubcell) { 339387feddfdSMatthew G. Knepley if (subCells[negsubcell] == cells[p]) break; 3394766ab985SMatthew G. Knepley } 339587feddfdSMatthew G. Knepley if (negsubcell == numSubCells) SETERRQ1(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Could not find negative face neighbor for cohesive cell %d", cell); 339687feddfdSMatthew G. Knepley ierr = DMPlexSetCone(subdm, negsubcell, &newFacePoint);CHKERRQ(ierr); 3397766ab985SMatthew G. Knepley } 339887feddfdSMatthew G. Knepley ierr = DMPlexRestoreJoin(dm, nFV, cone, &numCells, &cells);CHKERRQ(ierr); 339987feddfdSMatthew G. Knepley ++newFacePoint; 3400766ab985SMatthew G. Knepley } 340169291d52SBarry Smith ierr = DMRestoreWorkArray(subdm, maxConeSize, MPIU_INT, (void**) &subface);CHKERRQ(ierr); 3402766ab985SMatthew G. Knepley ierr = DMPlexSymmetrize(subdm);CHKERRQ(ierr); 3403766ab985SMatthew G. Knepley ierr = DMPlexStratify(subdm);CHKERRQ(ierr); 3404766ab985SMatthew G. Knepley /* Build coordinates */ 3405766ab985SMatthew G. Knepley { 3406766ab985SMatthew G. Knepley PetscSection coordSection, subCoordSection; 3407766ab985SMatthew G. Knepley Vec coordinates, subCoordinates; 3408766ab985SMatthew G. Knepley PetscScalar *coords, *subCoords; 3409c0e8cf5fSMatthew G. Knepley PetscInt cdim, numComp, coordSize, v; 341024640c55SToby Isaac const char *name; 3411766ab985SMatthew G. Knepley 3412c0e8cf5fSMatthew G. Knepley ierr = DMGetCoordinateDim(dm, &cdim);CHKERRQ(ierr); 341369d8a9ceSMatthew G. Knepley ierr = DMGetCoordinateSection(dm, &coordSection);CHKERRQ(ierr); 3414766ab985SMatthew G. Knepley ierr = DMGetCoordinatesLocal(dm, &coordinates);CHKERRQ(ierr); 341569d8a9ceSMatthew G. Knepley ierr = DMGetCoordinateSection(subdm, &subCoordSection);CHKERRQ(ierr); 3416285d324eSMatthew G. Knepley ierr = PetscSectionSetNumFields(subCoordSection, 1);CHKERRQ(ierr); 3417285d324eSMatthew G. Knepley ierr = PetscSectionGetFieldComponents(coordSection, 0, &numComp);CHKERRQ(ierr); 3418285d324eSMatthew G. Knepley ierr = PetscSectionSetFieldComponents(subCoordSection, 0, numComp);CHKERRQ(ierr); 3419766ab985SMatthew G. Knepley ierr = PetscSectionSetChart(subCoordSection, firstSubVertex, firstSubVertex+numSubVertices);CHKERRQ(ierr); 3420766ab985SMatthew G. Knepley for (v = 0; v < numSubVertices; ++v) { 3421766ab985SMatthew G. Knepley const PetscInt vertex = subVertices[v]; 3422766ab985SMatthew G. Knepley const PetscInt subvertex = firstSubVertex+v; 3423766ab985SMatthew G. Knepley PetscInt dof; 3424766ab985SMatthew G. Knepley 3425766ab985SMatthew G. Knepley ierr = PetscSectionGetDof(coordSection, vertex, &dof);CHKERRQ(ierr); 3426766ab985SMatthew G. Knepley ierr = PetscSectionSetDof(subCoordSection, subvertex, dof);CHKERRQ(ierr); 3427285d324eSMatthew G. Knepley ierr = PetscSectionSetFieldDof(subCoordSection, subvertex, 0, dof);CHKERRQ(ierr); 3428766ab985SMatthew G. Knepley } 3429766ab985SMatthew G. Knepley ierr = PetscSectionSetUp(subCoordSection);CHKERRQ(ierr); 3430766ab985SMatthew G. Knepley ierr = PetscSectionGetStorageSize(subCoordSection, &coordSize);CHKERRQ(ierr); 34318b9ced59SLisandro Dalcin ierr = VecCreate(PETSC_COMM_SELF, &subCoordinates);CHKERRQ(ierr); 343224640c55SToby Isaac ierr = PetscObjectGetName((PetscObject)coordinates,&name);CHKERRQ(ierr); 343324640c55SToby Isaac ierr = PetscObjectSetName((PetscObject)subCoordinates,name);CHKERRQ(ierr); 3434766ab985SMatthew G. Knepley ierr = VecSetSizes(subCoordinates, coordSize, PETSC_DETERMINE);CHKERRQ(ierr); 3435c0e8cf5fSMatthew G. Knepley ierr = VecSetBlockSize(subCoordinates, cdim);CHKERRQ(ierr); 34362eb5907fSJed Brown ierr = VecSetType(subCoordinates,VECSTANDARD);CHKERRQ(ierr); 3437766ab985SMatthew G. Knepley ierr = VecGetArray(coordinates, &coords);CHKERRQ(ierr); 3438766ab985SMatthew G. Knepley ierr = VecGetArray(subCoordinates, &subCoords);CHKERRQ(ierr); 3439766ab985SMatthew G. Knepley for (v = 0; v < numSubVertices; ++v) { 3440766ab985SMatthew G. Knepley const PetscInt vertex = subVertices[v]; 3441766ab985SMatthew G. Knepley const PetscInt subvertex = firstSubVertex+v; 3442766ab985SMatthew G. Knepley PetscInt dof, off, sdof, soff, d; 3443766ab985SMatthew G. Knepley 3444766ab985SMatthew G. Knepley ierr = PetscSectionGetDof(coordSection, vertex, &dof);CHKERRQ(ierr); 3445766ab985SMatthew G. Knepley ierr = PetscSectionGetOffset(coordSection, vertex, &off);CHKERRQ(ierr); 3446766ab985SMatthew G. Knepley ierr = PetscSectionGetDof(subCoordSection, subvertex, &sdof);CHKERRQ(ierr); 3447766ab985SMatthew G. Knepley ierr = PetscSectionGetOffset(subCoordSection, subvertex, &soff);CHKERRQ(ierr); 3448766ab985SMatthew G. Knepley if (dof != sdof) SETERRQ4(comm, PETSC_ERR_PLIB, "Coordinate dimension %d on subvertex %d, vertex %d should be %d", sdof, subvertex, vertex, dof); 3449766ab985SMatthew G. Knepley for (d = 0; d < dof; ++d) subCoords[soff+d] = coords[off+d]; 3450766ab985SMatthew G. Knepley } 3451766ab985SMatthew G. Knepley ierr = VecRestoreArray(coordinates, &coords);CHKERRQ(ierr); 3452766ab985SMatthew G. Knepley ierr = VecRestoreArray(subCoordinates, &subCoords);CHKERRQ(ierr); 3453766ab985SMatthew G. Knepley ierr = DMSetCoordinatesLocal(subdm, subCoordinates);CHKERRQ(ierr); 3454766ab985SMatthew G. Knepley ierr = VecDestroy(&subCoordinates);CHKERRQ(ierr); 3455766ab985SMatthew G. Knepley } 3456aca35d17SMatthew G. Knepley /* Build SF */ 3457aca35d17SMatthew G. Knepley CHKMEMQ; 3458aca35d17SMatthew G. Knepley { 3459aca35d17SMatthew G. Knepley PetscSF sfPoint, sfPointSub; 3460aca35d17SMatthew G. Knepley const PetscSFNode *remotePoints; 3461bdcf2095SMatthew G. Knepley PetscSFNode *sremotePoints, *newLocalPoints, *newOwners; 3462aca35d17SMatthew G. Knepley const PetscInt *localPoints; 3463bdcf2095SMatthew G. Knepley PetscInt *slocalPoints; 346449c26ae4SMatthew G. Knepley PetscInt numRoots, numLeaves, numSubRoots = numSubCells+numSubFaces+numSubVertices, numSubLeaves = 0, l, sl, ll, pStart, pEnd, p, vStart, vEnd; 3465bdcf2095SMatthew G. Knepley PetscMPIInt rank; 3466aca35d17SMatthew G. Knepley 3467bdcf2095SMatthew G. Knepley ierr = MPI_Comm_rank(PetscObjectComm((PetscObject) dm), &rank);CHKERRQ(ierr); 3468aca35d17SMatthew G. Knepley ierr = DMGetPointSF(dm, &sfPoint);CHKERRQ(ierr); 3469aca35d17SMatthew G. Knepley ierr = DMGetPointSF(subdm, &sfPointSub);CHKERRQ(ierr); 3470aca35d17SMatthew G. Knepley ierr = DMPlexGetChart(dm, &pStart, &pEnd);CHKERRQ(ierr); 3471aca35d17SMatthew G. Knepley ierr = DMPlexGetDepthStratum(dm, 0, &vStart, &vEnd);CHKERRQ(ierr); 3472aca35d17SMatthew G. Knepley ierr = PetscSFGetGraph(sfPoint, &numRoots, &numLeaves, &localPoints, &remotePoints);CHKERRQ(ierr); 3473aca35d17SMatthew G. Knepley if (numRoots >= 0) { 3474aca35d17SMatthew G. Knepley /* Only vertices should be shared */ 3475dcca6d9dSJed Brown ierr = PetscMalloc2(pEnd-pStart,&newLocalPoints,numRoots,&newOwners);CHKERRQ(ierr); 3476bdcf2095SMatthew G. Knepley for (p = 0; p < pEnd-pStart; ++p) { 3477bdcf2095SMatthew G. Knepley newLocalPoints[p].rank = -2; 3478bdcf2095SMatthew G. Knepley newLocalPoints[p].index = -2; 3479bdcf2095SMatthew G. Knepley } 34809e0823b2SMatthew G. Knepley /* Set subleaves */ 3481aca35d17SMatthew G. Knepley for (l = 0; l < numLeaves; ++l) { 3482aca35d17SMatthew G. Knepley const PetscInt point = localPoints[l]; 3483bdcf2095SMatthew G. Knepley const PetscInt subPoint = DMPlexFilterPoint_Internal(point, firstSubVertex, numSubVertices, subVertices); 3484aca35d17SMatthew G. Knepley 3485aca35d17SMatthew G. Knepley if ((point < vStart) && (point >= vEnd)) SETERRQ1(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Should not be mapping anything but vertices, %d", point); 3486bdcf2095SMatthew G. Knepley if (subPoint < 0) continue; 3487bdcf2095SMatthew G. Knepley newLocalPoints[point-pStart].rank = rank; 3488bdcf2095SMatthew G. Knepley newLocalPoints[point-pStart].index = subPoint; 3489bdcf2095SMatthew G. Knepley ++numSubLeaves; 3490aca35d17SMatthew G. Knepley } 34919e0823b2SMatthew G. Knepley /* Must put in owned subpoints */ 34929e0823b2SMatthew G. Knepley for (p = pStart; p < pEnd; ++p) { 34939e0823b2SMatthew G. Knepley const PetscInt subPoint = DMPlexFilterPoint_Internal(p, firstSubVertex, numSubVertices, subVertices); 34949e0823b2SMatthew G. Knepley 34959e0823b2SMatthew G. Knepley if (subPoint < 0) { 34969e0823b2SMatthew G. Knepley newOwners[p-pStart].rank = -3; 34979e0823b2SMatthew G. Knepley newOwners[p-pStart].index = -3; 34989e0823b2SMatthew G. Knepley } else { 34999e0823b2SMatthew G. Knepley newOwners[p-pStart].rank = rank; 35009e0823b2SMatthew G. Knepley newOwners[p-pStart].index = subPoint; 35019e0823b2SMatthew G. Knepley } 3502bdcf2095SMatthew G. Knepley } 3503bdcf2095SMatthew G. Knepley ierr = PetscSFReduceBegin(sfPoint, MPIU_2INT, newLocalPoints, newOwners, MPI_MAXLOC);CHKERRQ(ierr); 3504bdcf2095SMatthew G. Knepley ierr = PetscSFReduceEnd(sfPoint, MPIU_2INT, newLocalPoints, newOwners, MPI_MAXLOC);CHKERRQ(ierr); 3505bdcf2095SMatthew G. Knepley ierr = PetscSFBcastBegin(sfPoint, MPIU_2INT, newOwners, newLocalPoints);CHKERRQ(ierr); 3506bdcf2095SMatthew G. Knepley ierr = PetscSFBcastEnd(sfPoint, MPIU_2INT, newOwners, newLocalPoints);CHKERRQ(ierr); 3507785e854fSJed Brown ierr = PetscMalloc1(numSubLeaves, &slocalPoints);CHKERRQ(ierr); 3508785e854fSJed Brown ierr = PetscMalloc1(numSubLeaves, &sremotePoints);CHKERRQ(ierr); 350949c26ae4SMatthew G. Knepley for (l = 0, sl = 0, ll = 0; l < numLeaves; ++l) { 3510bdcf2095SMatthew G. Knepley const PetscInt point = localPoints[l]; 3511bdcf2095SMatthew G. Knepley const PetscInt subPoint = DMPlexFilterPoint_Internal(point, firstSubVertex, numSubVertices, subVertices); 3512aca35d17SMatthew G. Knepley 3513aca35d17SMatthew G. Knepley if (subPoint < 0) continue; 351449c26ae4SMatthew G. Knepley if (newLocalPoints[point].rank == rank) {++ll; continue;} 3515aca35d17SMatthew G. Knepley slocalPoints[sl] = subPoint; 3516bdcf2095SMatthew G. Knepley sremotePoints[sl].rank = newLocalPoints[point].rank; 3517bdcf2095SMatthew G. Knepley sremotePoints[sl].index = newLocalPoints[point].index; 3518bdcf2095SMatthew G. Knepley if (sremotePoints[sl].rank < 0) SETERRQ1(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid remote rank for local point %d", point); 3519bdcf2095SMatthew G. Knepley if (sremotePoints[sl].index < 0) SETERRQ1(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid remote subpoint for local point %d", point); 3520aca35d17SMatthew G. Knepley ++sl; 3521aca35d17SMatthew G. Knepley } 3522bdcf2095SMatthew G. Knepley ierr = PetscFree2(newLocalPoints,newOwners);CHKERRQ(ierr); 352349c26ae4SMatthew G. Knepley if (sl + ll != numSubLeaves) SETERRQ3(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Mismatch in number of subleaves %d + %d != %d", sl, ll, numSubLeaves); 352449c26ae4SMatthew G. Knepley ierr = PetscSFSetGraph(sfPointSub, numSubRoots, sl, slocalPoints, PETSC_OWN_POINTER, sremotePoints, PETSC_OWN_POINTER);CHKERRQ(ierr); 3525aca35d17SMatthew G. Knepley } 3526aca35d17SMatthew G. Knepley } 3527aca35d17SMatthew G. Knepley CHKMEMQ; 3528766ab985SMatthew G. Knepley /* Cleanup */ 3529766ab985SMatthew G. Knepley if (subvertexIS) {ierr = ISRestoreIndices(subvertexIS, &subVertices);CHKERRQ(ierr);} 3530766ab985SMatthew G. Knepley ierr = ISDestroy(&subvertexIS);CHKERRQ(ierr); 3531766ab985SMatthew G. Knepley ierr = PetscFree(subCells);CHKERRQ(ierr); 3532766ab985SMatthew G. Knepley PetscFunctionReturn(0); 3533766ab985SMatthew G. Knepley } 3534766ab985SMatthew G. Knepley 35353982b651SMatthew G. Knepley static PetscErrorCode DMPlexCreateCohesiveSubmesh_Interpolated(DM dm, const char labelname[], PetscInt value, DM subdm) 3536766ab985SMatthew G. Knepley { 35373982b651SMatthew G. Knepley DMLabel label = NULL; 3538766ab985SMatthew G. Knepley PetscErrorCode ierr; 3539766ab985SMatthew G. Knepley 3540766ab985SMatthew G. Knepley PetscFunctionBegin; 3541c58f1c22SToby Isaac if (labelname) {ierr = DMGetLabel(dm, labelname, &label);CHKERRQ(ierr);} 3542158acfadSMatthew G. Knepley ierr = DMPlexCreateSubmeshGeneric_Interpolated(dm, label, value, PETSC_FALSE, PETSC_TRUE, 1, subdm);CHKERRQ(ierr); 3543766ab985SMatthew G. Knepley PetscFunctionReturn(0); 3544766ab985SMatthew G. Knepley } 3545766ab985SMatthew G. Knepley 3546c08575a3SMatthew G. Knepley /*@C 354727c04023SMatthew G. Knepley DMPlexCreateCohesiveSubmesh - Extract from a mesh with cohesive cells the hypersurface defined by one face of the cells. Optionally, a Label an be given to restrict the cells. 3548766ab985SMatthew G. Knepley 3549766ab985SMatthew G. Knepley Input Parameters: 3550766ab985SMatthew G. Knepley + dm - The original mesh 355127c04023SMatthew G. Knepley . hasLagrange - The mesh has Lagrange unknowns in the cohesive cells 35527afc1a8bSJed Brown . label - A label name, or NULL 355327c04023SMatthew G. Knepley - value - A label value 3554766ab985SMatthew G. Knepley 3555766ab985SMatthew G. Knepley Output Parameter: 3556766ab985SMatthew G. Knepley . subdm - The surface mesh 3557766ab985SMatthew G. Knepley 3558766ab985SMatthew G. Knepley Note: This function produces a DMLabel mapping original points in the submesh to their depth. This can be obtained using DMPlexGetSubpointMap(). 3559766ab985SMatthew G. Knepley 3560766ab985SMatthew G. Knepley Level: developer 3561766ab985SMatthew G. Knepley 3562766ab985SMatthew G. Knepley .seealso: DMPlexGetSubpointMap(), DMPlexCreateSubmesh() 3563c08575a3SMatthew G. Knepley @*/ 356427c04023SMatthew G. Knepley PetscErrorCode DMPlexCreateCohesiveSubmesh(DM dm, PetscBool hasLagrange, const char label[], PetscInt value, DM *subdm) 3565766ab985SMatthew G. Knepley { 3566c0e8cf5fSMatthew G. Knepley PetscInt dim, cdim, depth; 3567766ab985SMatthew G. Knepley PetscErrorCode ierr; 3568766ab985SMatthew G. Knepley 3569766ab985SMatthew G. Knepley PetscFunctionBegin; 3570766ab985SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 357127c04023SMatthew G. Knepley PetscValidPointer(subdm, 5); 3572c73cfb54SMatthew G. Knepley ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr); 3573766ab985SMatthew G. Knepley ierr = DMPlexGetDepth(dm, &depth);CHKERRQ(ierr); 3574766ab985SMatthew G. Knepley ierr = DMCreate(PetscObjectComm((PetscObject)dm), subdm);CHKERRQ(ierr); 3575766ab985SMatthew G. Knepley ierr = DMSetType(*subdm, DMPLEX);CHKERRQ(ierr); 3576c73cfb54SMatthew G. Knepley ierr = DMSetDimension(*subdm, dim-1);CHKERRQ(ierr); 3577c0e8cf5fSMatthew G. Knepley ierr = DMGetCoordinateDim(dm, &cdim);CHKERRQ(ierr); 3578c0e8cf5fSMatthew G. Knepley ierr = DMSetCoordinateDim(*subdm, cdim);CHKERRQ(ierr); 3579766ab985SMatthew G. Knepley if (depth == dim) { 3580b3154360SMatthew G. Knepley ierr = DMPlexCreateCohesiveSubmesh_Interpolated(dm, label, value, *subdm);CHKERRQ(ierr); 3581766ab985SMatthew G. Knepley } else { 358227c04023SMatthew G. Knepley ierr = DMPlexCreateCohesiveSubmesh_Uninterpolated(dm, hasLagrange, label, value, *subdm);CHKERRQ(ierr); 3583e6ccafaeSMatthew G Knepley } 3584e6ccafaeSMatthew G Knepley PetscFunctionReturn(0); 3585e6ccafaeSMatthew G Knepley } 3586e6ccafaeSMatthew G Knepley 3587bec263e5SMatthew G. Knepley /*@ 3588bec263e5SMatthew G. Knepley DMPlexFilter - Extract a subset of mesh cells defined by a label as a separate mesh 3589bec263e5SMatthew G. Knepley 3590bec263e5SMatthew G. Knepley Input Parameters: 3591bec263e5SMatthew G. Knepley + dm - The original mesh 3592bec263e5SMatthew G. Knepley . cellLabel - The DMLabel marking cells contained in the new mesh 3593bec263e5SMatthew G. Knepley - value - The label value to use 3594bec263e5SMatthew G. Knepley 3595bec263e5SMatthew G. Knepley Output Parameter: 3596bec263e5SMatthew G. Knepley . subdm - The new mesh 3597bec263e5SMatthew G. Knepley 3598bec263e5SMatthew G. Knepley Note: This function produces a DMLabel mapping original points in the submesh to their depth. This can be obtained using DMPlexGetSubpointMap(). 3599bec263e5SMatthew G. Knepley 3600bec263e5SMatthew G. Knepley Level: developer 3601bec263e5SMatthew G. Knepley 3602c58f1c22SToby Isaac .seealso: DMPlexGetSubpointMap(), DMGetLabel(), DMLabelSetValue() 3603bec263e5SMatthew G. Knepley @*/ 3604bec263e5SMatthew G. Knepley PetscErrorCode DMPlexFilter(DM dm, DMLabel cellLabel, PetscInt value, DM *subdm) 3605bec263e5SMatthew G. Knepley { 3606bec263e5SMatthew G. Knepley PetscInt dim; 3607bec263e5SMatthew G. Knepley PetscErrorCode ierr; 3608bec263e5SMatthew G. Knepley 3609bec263e5SMatthew G. Knepley PetscFunctionBegin; 3610bec263e5SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 3611bec263e5SMatthew G. Knepley PetscValidPointer(subdm, 3); 3612bec263e5SMatthew G. Knepley ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr); 3613bec263e5SMatthew G. Knepley ierr = DMCreate(PetscObjectComm((PetscObject) dm), subdm);CHKERRQ(ierr); 3614bec263e5SMatthew G. Knepley ierr = DMSetType(*subdm, DMPLEX);CHKERRQ(ierr); 3615bec263e5SMatthew G. Knepley ierr = DMSetDimension(*subdm, dim);CHKERRQ(ierr); 3616bec263e5SMatthew G. Knepley /* Extract submesh in place, could be empty on some procs, could have inconsistency if procs do not both extract a shared cell */ 3617158acfadSMatthew G. Knepley ierr = DMPlexCreateSubmeshGeneric_Interpolated(dm, cellLabel, value, PETSC_FALSE, PETSC_FALSE, 0, *subdm);CHKERRQ(ierr); 3618bec263e5SMatthew G. Knepley PetscFunctionReturn(0); 3619bec263e5SMatthew G. Knepley } 3620bec263e5SMatthew G. Knepley 362164beef6dSMatthew G. Knepley /*@ 362264beef6dSMatthew G. Knepley DMPlexGetSubpointMap - Returns a DMLabel with point dimension as values 362364beef6dSMatthew G. Knepley 362464beef6dSMatthew G. Knepley Input Parameter: 362564beef6dSMatthew G. Knepley . dm - The submesh DM 362664beef6dSMatthew G. Knepley 362764beef6dSMatthew G. Knepley Output Parameter: 362864beef6dSMatthew G. Knepley . subpointMap - The DMLabel of all the points from the original mesh in this submesh, or NULL if this is not a submesh 362964beef6dSMatthew G. Knepley 363064beef6dSMatthew G. Knepley Level: developer 363164beef6dSMatthew G. Knepley 363264beef6dSMatthew G. Knepley .seealso: DMPlexCreateSubmesh(), DMPlexCreateSubpointIS() 363364beef6dSMatthew G. Knepley @*/ 3634e6ccafaeSMatthew G Knepley PetscErrorCode DMPlexGetSubpointMap(DM dm, DMLabel *subpointMap) 3635e6ccafaeSMatthew G Knepley { 3636e6ccafaeSMatthew G Knepley PetscFunctionBegin; 3637e6ccafaeSMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 3638e6ccafaeSMatthew G Knepley PetscValidPointer(subpointMap, 2); 363965663942SMatthew G. Knepley *subpointMap = ((DM_Plex*) dm->data)->subpointMap; 3640e6ccafaeSMatthew G Knepley PetscFunctionReturn(0); 3641e6ccafaeSMatthew G Knepley } 3642e6ccafaeSMatthew G Knepley 3643c08575a3SMatthew G. Knepley /*@ 3644c08575a3SMatthew G. Knepley DMPlexSetSubpointMap - Sets the DMLabel with point dimension as values 3645c08575a3SMatthew G. Knepley 3646c08575a3SMatthew G. Knepley Input Parameters: 3647c08575a3SMatthew G. Knepley + dm - The submesh DM 3648c08575a3SMatthew G. Knepley - subpointMap - The DMLabel of all the points from the original mesh in this submesh 3649c08575a3SMatthew G. Knepley 3650c08575a3SMatthew G. Knepley Note: Should normally not be called by the user, since it is set in DMPlexCreateSubmesh() 3651c08575a3SMatthew G. Knepley 3652c08575a3SMatthew G. Knepley Level: developer 3653c08575a3SMatthew G. Knepley 3654c08575a3SMatthew G. Knepley .seealso: DMPlexCreateSubmesh(), DMPlexCreateSubpointIS() 3655c08575a3SMatthew G. Knepley @*/ 3656e6ccafaeSMatthew G Knepley PetscErrorCode DMPlexSetSubpointMap(DM dm, DMLabel subpointMap) 3657e6ccafaeSMatthew G Knepley { 3658e6ccafaeSMatthew G Knepley DM_Plex *mesh = (DM_Plex *) dm->data; 3659285d324eSMatthew G. Knepley DMLabel tmp; 3660e6ccafaeSMatthew G Knepley PetscErrorCode ierr; 3661e6ccafaeSMatthew G Knepley 3662e6ccafaeSMatthew G Knepley PetscFunctionBegin; 3663e6ccafaeSMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 3664285d324eSMatthew G. Knepley tmp = mesh->subpointMap; 3665e6ccafaeSMatthew G Knepley mesh->subpointMap = subpointMap; 3666d67d17b1SMatthew G. Knepley ierr = PetscObjectReference((PetscObject) mesh->subpointMap);CHKERRQ(ierr); 3667285d324eSMatthew G. Knepley ierr = DMLabelDestroy(&tmp);CHKERRQ(ierr); 3668e6ccafaeSMatthew G Knepley PetscFunctionReturn(0); 3669e6ccafaeSMatthew G Knepley } 3670e6ccafaeSMatthew G Knepley 367164beef6dSMatthew G. Knepley /*@ 3672e6ccafaeSMatthew G Knepley DMPlexCreateSubpointIS - Creates an IS covering the entire subdm chart with the original points as data 3673e6ccafaeSMatthew G Knepley 3674e6ccafaeSMatthew G Knepley Input Parameter: 3675e6ccafaeSMatthew G Knepley . dm - The submesh DM 3676e6ccafaeSMatthew G Knepley 3677e6ccafaeSMatthew G Knepley Output Parameter: 36780298fd71SBarry Smith . subpointIS - The IS of all the points from the original mesh in this submesh, or NULL if this is not a submesh 3679e6ccafaeSMatthew G Knepley 36803982b651SMatthew G. Knepley Note: This IS is guaranteed to be sorted by the construction of the submesh 368164beef6dSMatthew G. Knepley 368264beef6dSMatthew G. Knepley Level: developer 368364beef6dSMatthew G. Knepley 368464beef6dSMatthew G. Knepley .seealso: DMPlexCreateSubmesh(), DMPlexGetSubpointMap() 368564beef6dSMatthew G. Knepley @*/ 3686e6ccafaeSMatthew G Knepley PetscErrorCode DMPlexCreateSubpointIS(DM dm, IS *subpointIS) 3687e6ccafaeSMatthew G Knepley { 368882f516ccSBarry Smith MPI_Comm comm; 3689e6ccafaeSMatthew G Knepley DMLabel subpointMap; 3690e6ccafaeSMatthew G Knepley IS is; 3691e6ccafaeSMatthew G Knepley const PetscInt *opoints; 3692e6ccafaeSMatthew G Knepley PetscInt *points, *depths; 3693e6ccafaeSMatthew G Knepley PetscInt depth, depStart, depEnd, d, pStart, pEnd, p, n, off; 3694e6ccafaeSMatthew G Knepley PetscErrorCode ierr; 3695e6ccafaeSMatthew G Knepley 3696e6ccafaeSMatthew G Knepley PetscFunctionBegin; 3697e6ccafaeSMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 3698e6ccafaeSMatthew G Knepley PetscValidPointer(subpointIS, 2); 369982f516ccSBarry Smith ierr = PetscObjectGetComm((PetscObject)dm,&comm);CHKERRQ(ierr); 37000298fd71SBarry Smith *subpointIS = NULL; 3701e6ccafaeSMatthew G Knepley ierr = DMPlexGetSubpointMap(dm, &subpointMap);CHKERRQ(ierr); 3702e6ccafaeSMatthew G Knepley ierr = DMPlexGetDepth(dm, &depth);CHKERRQ(ierr); 3703fed694aaSMatthew G. Knepley if (subpointMap && depth >= 0) { 3704e6ccafaeSMatthew G Knepley ierr = DMPlexGetChart(dm, &pStart, &pEnd);CHKERRQ(ierr); 3705e6ccafaeSMatthew G Knepley if (pStart) SETERRQ1(comm, PETSC_ERR_ARG_WRONG, "Submeshes must start the point numbering at 0, not %d", pStart); 370669291d52SBarry Smith ierr = DMGetWorkArray(dm, depth+1, MPIU_INT, &depths);CHKERRQ(ierr); 3707e6ccafaeSMatthew G Knepley depths[0] = depth; 3708e6ccafaeSMatthew G Knepley depths[1] = 0; 3709e6ccafaeSMatthew G Knepley for(d = 2; d <= depth; ++d) {depths[d] = depth+1 - d;} 3710785e854fSJed Brown ierr = PetscMalloc1(pEnd, &points);CHKERRQ(ierr); 3711e6ccafaeSMatthew G Knepley for(d = 0, off = 0; d <= depth; ++d) { 3712e6ccafaeSMatthew G Knepley const PetscInt dep = depths[d]; 3713e6ccafaeSMatthew G Knepley 3714e6ccafaeSMatthew G Knepley ierr = DMPlexGetDepthStratum(dm, dep, &depStart, &depEnd);CHKERRQ(ierr); 3715e6ccafaeSMatthew G Knepley ierr = DMLabelGetStratumSize(subpointMap, dep, &n);CHKERRQ(ierr); 37161e21b6fdSMatthew G Knepley if (((d < 2) && (depth > 1)) || (d == 1)) { /* Only check vertices and cells for now since the map is broken for others */ 3717e6ccafaeSMatthew G Knepley if (n != depEnd-depStart) SETERRQ3(comm, PETSC_ERR_ARG_WRONG, "The number of mapped submesh points %d at depth %d should be %d", n, dep, depEnd-depStart); 3718e6ccafaeSMatthew G Knepley } else { 37191e21b6fdSMatthew G Knepley if (!n) { 37201e21b6fdSMatthew G Knepley if (d == 0) { 37211e21b6fdSMatthew G Knepley /* Missing cells */ 37221e21b6fdSMatthew G Knepley for(p = 0; p < depEnd-depStart; ++p, ++off) points[off] = -1; 37231e21b6fdSMatthew G Knepley } else { 37241e21b6fdSMatthew G Knepley /* Missing faces */ 37251e21b6fdSMatthew G Knepley for(p = 0; p < depEnd-depStart; ++p, ++off) points[off] = PETSC_MAX_INT; 37261e21b6fdSMatthew G Knepley } 37271e21b6fdSMatthew G Knepley } 3728e6ccafaeSMatthew G Knepley } 3729e6ccafaeSMatthew G Knepley if (n) { 3730e6ccafaeSMatthew G Knepley ierr = DMLabelGetStratumIS(subpointMap, dep, &is);CHKERRQ(ierr); 3731e6ccafaeSMatthew G Knepley ierr = ISGetIndices(is, &opoints);CHKERRQ(ierr); 3732e6ccafaeSMatthew G Knepley for(p = 0; p < n; ++p, ++off) points[off] = opoints[p]; 3733e6ccafaeSMatthew G Knepley ierr = ISRestoreIndices(is, &opoints);CHKERRQ(ierr); 3734e6ccafaeSMatthew G Knepley ierr = ISDestroy(&is);CHKERRQ(ierr); 3735e6ccafaeSMatthew G Knepley } 3736e6ccafaeSMatthew G Knepley } 373769291d52SBarry Smith ierr = DMRestoreWorkArray(dm, depth+1, MPIU_INT, &depths);CHKERRQ(ierr); 3738e6ccafaeSMatthew G Knepley if (off != pEnd) SETERRQ2(comm, PETSC_ERR_ARG_WRONG, "The number of mapped submesh points %d should be %d", off, pEnd); 3739fed694aaSMatthew G. Knepley ierr = ISCreateGeneral(PETSC_COMM_SELF, pEnd, points, PETSC_OWN_POINTER, subpointIS);CHKERRQ(ierr); 3740e6ccafaeSMatthew G Knepley } 3741e6ccafaeSMatthew G Knepley PetscFunctionReturn(0); 3742e6ccafaeSMatthew G Knepley } 3743559a1558SMatthew G. Knepley 3744559a1558SMatthew G. Knepley /*@ 3745*a6e0b375SMatthew G. Knepley DMGetEnclosureRelation - Get the relationship between dmA and dmB 3746559a1558SMatthew G. Knepley 3747559a1558SMatthew G. Knepley Input Parameters: 3748*a6e0b375SMatthew G. Knepley + dmA - The first DM 3749*a6e0b375SMatthew G. Knepley - dmB - The second DM 3750559a1558SMatthew G. Knepley 3751559a1558SMatthew G. Knepley Output Parameter: 3752*a6e0b375SMatthew G. Knepley . rel - The relation of dmA to dmB 3753559a1558SMatthew G. Knepley 3754*a6e0b375SMatthew G. Knepley Level: intermediate 3755559a1558SMatthew G. Knepley 3756*a6e0b375SMatthew G. Knepley .seealso: DMPlexGetEnclosurePoint() 3757559a1558SMatthew G. Knepley @*/ 3758*a6e0b375SMatthew G. Knepley PetscErrorCode DMGetEnclosureRelation(DM dmA, DM dmB, DMEnclosureType *rel) 3759559a1558SMatthew G. Knepley { 3760*a6e0b375SMatthew G. Knepley DM plexA, plexB, sdm; 3761559a1558SMatthew G. Knepley DMLabel spmap; 3762*a6e0b375SMatthew G. Knepley PetscInt pStartA, pEndA, pStartB, pEndB, NpA, NpB; 3763559a1558SMatthew G. Knepley PetscErrorCode ierr; 3764559a1558SMatthew G. Knepley 376544171101SMatthew G. Knepley PetscFunctionBegin; 3766*a6e0b375SMatthew G. Knepley PetscValidPointer(rel, 3); 3767*a6e0b375SMatthew G. Knepley *rel = DM_ENC_NONE; 3768*a6e0b375SMatthew G. Knepley if (!dmA || !dmB) PetscFunctionReturn(0); 3769*a6e0b375SMatthew G. Knepley PetscValidHeaderSpecific(dmA, DM_CLASSID, 1); 3770*a6e0b375SMatthew G. Knepley PetscValidHeaderSpecific(dmB, DM_CLASSID, 1); 3771*a6e0b375SMatthew G. Knepley if (dmA == dmB) {*rel = DM_ENC_EQUALITY; PetscFunctionReturn(0);} 3772*a6e0b375SMatthew G. Knepley ierr = DMConvert(dmA, DMPLEX, &plexA);CHKERRQ(ierr); 3773*a6e0b375SMatthew G. Knepley ierr = DMConvert(dmB, DMPLEX, &plexB);CHKERRQ(ierr); 3774*a6e0b375SMatthew G. Knepley ierr = DMPlexGetChart(plexA, &pStartA, &pEndA);CHKERRQ(ierr); 3775*a6e0b375SMatthew G. Knepley ierr = DMPlexGetChart(plexB, &pStartB, &pEndB);CHKERRQ(ierr); 3776*a6e0b375SMatthew G. Knepley /* Assumption 1: subDMs have smaller charts than the DMs that they originate from 3777*a6e0b375SMatthew G. Knepley - The degenerate case of a subdomain which includes all of the domain on some process can be treated as equality */ 3778*a6e0b375SMatthew G. Knepley if ((pStartA == pStartB) && (pEndA == pEndB)) { 3779*a6e0b375SMatthew G. Knepley *rel = DM_ENC_EQUALITY; 3780*a6e0b375SMatthew G. Knepley goto end; 3781559a1558SMatthew G. Knepley } 3782*a6e0b375SMatthew G. Knepley NpA = pEndA - pStartA; 3783*a6e0b375SMatthew G. Knepley NpB = pEndB - pStartB; 3784*a6e0b375SMatthew G. Knepley if (NpA == NpB) goto end; 3785*a6e0b375SMatthew G. Knepley sdm = NpA > NpB ? plexB : plexA; /* The other is the original, enclosing dm */ 3786*a6e0b375SMatthew G. Knepley ierr = DMPlexGetSubpointMap(sdm, &spmap);CHKERRQ(ierr); 3787*a6e0b375SMatthew G. Knepley if (!spmap) goto end; 3788*a6e0b375SMatthew G. Knepley /* TODO Check the space mapped to by subpointMap is same size as dm */ 3789*a6e0b375SMatthew G. Knepley if (NpA > NpB) { 3790*a6e0b375SMatthew G. Knepley *rel = DM_ENC_SUPERMESH; 3791*a6e0b375SMatthew G. Knepley } else { 3792*a6e0b375SMatthew G. Knepley *rel = DM_ENC_SUBMESH; 3793*a6e0b375SMatthew G. Knepley } 3794*a6e0b375SMatthew G. Knepley end: 3795*a6e0b375SMatthew G. Knepley ierr = DMDestroy(&plexA);CHKERRQ(ierr); 3796*a6e0b375SMatthew G. Knepley ierr = DMDestroy(&plexB);CHKERRQ(ierr); 3797559a1558SMatthew G. Knepley PetscFunctionReturn(0); 3798559a1558SMatthew G. Knepley } 379944171101SMatthew G. Knepley 380044171101SMatthew G. Knepley /*@ 3801*a6e0b375SMatthew G. Knepley DMGetEnclosurePoint - Get the point pA in dmA which corresponds to the point pB in dmB 380244171101SMatthew G. Knepley 380344171101SMatthew G. Knepley Input Parameters: 3804*a6e0b375SMatthew G. Knepley + dmA - The first DM 3805*a6e0b375SMatthew G. Knepley . dmB - The second DM 3806*a6e0b375SMatthew G. Knepley . etype - The type of enclosure relation that dmA has to dmB 3807*a6e0b375SMatthew G. Knepley - pB - A point of dmB 380844171101SMatthew G. Knepley 380944171101SMatthew G. Knepley Output Parameter: 3810*a6e0b375SMatthew G. Knepley . pA - The corresponding point of dmA 381144171101SMatthew G. Knepley 3812*a6e0b375SMatthew G. Knepley Level: intermediate 381344171101SMatthew G. Knepley 3814*a6e0b375SMatthew G. Knepley .seealso: DMGetEnclosureRelation() 381544171101SMatthew G. Knepley @*/ 3816*a6e0b375SMatthew G. Knepley PetscErrorCode DMGetEnclosurePoint(DM dmA, DM dmB, DMEnclosureType etype, PetscInt pB, PetscInt *pA) 381744171101SMatthew G. Knepley { 3818*a6e0b375SMatthew G. Knepley DM sdm; 381944171101SMatthew G. Knepley DMLabel spmap; 3820*a6e0b375SMatthew G. Knepley IS subpointIS; 3821*a6e0b375SMatthew G. Knepley const PetscInt *subpoints; 3822*a6e0b375SMatthew G. Knepley PetscInt numSubpoints; 382344171101SMatthew G. Knepley PetscErrorCode ierr; 382444171101SMatthew G. Knepley 382544171101SMatthew G. Knepley PetscFunctionBegin; 3826*a6e0b375SMatthew G. Knepley /* TODO Cache the IS, making it look like an index */ 3827*a6e0b375SMatthew G. Knepley switch (etype) { 3828*a6e0b375SMatthew G. Knepley case DM_ENC_SUPERMESH: 3829*a6e0b375SMatthew G. Knepley sdm = dmB; 3830*a6e0b375SMatthew G. Knepley ierr = DMPlexGetSubpointMap(sdm, &spmap);CHKERRQ(ierr); 3831*a6e0b375SMatthew G. Knepley ierr = DMPlexCreateSubpointIS(sdm, &subpointIS);CHKERRQ(ierr); 3832*a6e0b375SMatthew G. Knepley ierr = ISGetIndices(subpointIS, &subpoints);CHKERRQ(ierr); 3833*a6e0b375SMatthew G. Knepley *pA = subpoints[pB]; 3834*a6e0b375SMatthew G. Knepley ierr = ISRestoreIndices(subpointIS, &subpoints);CHKERRQ(ierr); 3835*a6e0b375SMatthew G. Knepley ierr = ISDestroy(&subpointIS);CHKERRQ(ierr); 3836*a6e0b375SMatthew G. Knepley break; 3837*a6e0b375SMatthew G. Knepley case DM_ENC_SUBMESH: 3838*a6e0b375SMatthew G. Knepley sdm = dmA; 3839*a6e0b375SMatthew G. Knepley ierr = DMPlexGetSubpointMap(sdm, &spmap);CHKERRQ(ierr); 3840*a6e0b375SMatthew G. Knepley ierr = DMPlexCreateSubpointIS(sdm, &subpointIS);CHKERRQ(ierr); 3841*a6e0b375SMatthew G. Knepley ierr = ISGetLocalSize(subpointIS, &numSubpoints);CHKERRQ(ierr); 3842*a6e0b375SMatthew G. Knepley ierr = ISGetIndices(subpointIS, &subpoints);CHKERRQ(ierr); 3843*a6e0b375SMatthew G. Knepley ierr = PetscFindInt(pB, numSubpoints, subpoints, pA);CHKERRQ(ierr); 3844*a6e0b375SMatthew G. Knepley if (*pA < 0) { 3845*a6e0b375SMatthew G. Knepley ierr = DMViewFromOptions(dmA, NULL, "-dm_enc_A_view");CHKERRQ(ierr); 3846*a6e0b375SMatthew G. Knepley ierr = DMViewFromOptions(dmB, NULL, "-dm_enc_B_view");CHKERRQ(ierr); 3847*a6e0b375SMatthew G. Knepley SETERRQ1(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Point %d not found in submesh", pB); 3848*a6e0b375SMatthew G. Knepley } 3849*a6e0b375SMatthew G. Knepley ierr = ISRestoreIndices(subpointIS, &subpoints);CHKERRQ(ierr); 3850*a6e0b375SMatthew G. Knepley ierr = ISDestroy(&subpointIS);CHKERRQ(ierr); 3851*a6e0b375SMatthew G. Knepley break; 3852*a6e0b375SMatthew G. Knepley case DM_ENC_EQUALITY: 3853*a6e0b375SMatthew G. Knepley case DM_ENC_NONE: 3854*a6e0b375SMatthew G. Knepley *pA = pB;break; 3855*a6e0b375SMatthew G. Knepley case DM_ENC_UNKNOWN: 3856*a6e0b375SMatthew G. Knepley { 3857*a6e0b375SMatthew G. Knepley DMEnclosureType enc; 385844171101SMatthew G. Knepley 3859*a6e0b375SMatthew G. Knepley ierr = DMGetEnclosureRelation(dmA, dmB, &enc);CHKERRQ(ierr); 3860*a6e0b375SMatthew G. Knepley ierr = DMGetEnclosurePoint(dmA, dmB, enc, pB, pA);CHKERRQ(ierr); 3861*a6e0b375SMatthew G. Knepley } 3862*a6e0b375SMatthew G. Knepley break; 3863*a6e0b375SMatthew G. Knepley default: SETERRQ1(PetscObjectComm((PetscObject) dmA), PETSC_ERR_ARG_OUTOFRANGE, "Invalid enclosure type %d", (int) etype); 386444171101SMatthew G. Knepley } 386544171101SMatthew G. Knepley PetscFunctionReturn(0); 386644171101SMatthew G. Knepley } 3867