1af0996ceSBarry Smith #include <petsc/private/dmpleximpl.h> /*I "petscdmplex.h" I*/ 2c58f1c22SToby Isaac #include <petsc/private/dmlabelimpl.h> /*I "petscdmlabel.h" I*/ 30c312b8eSJed Brown #include <petscsf.h> 4e6ccafaeSMatthew G Knepley 5412e9a14SMatthew G. Knepley static PetscErrorCode DMPlexCellIsHybrid_Internal(DM dm, PetscInt p, PetscBool *isHybrid) 6412e9a14SMatthew G. Knepley { 7412e9a14SMatthew G. Knepley DMPolytopeType ct; 8412e9a14SMatthew G. Knepley 9412e9a14SMatthew G. Knepley PetscFunctionBegin; 109566063dSJacob Faibussowitsch PetscCall(DMPlexGetCellType(dm, p, &ct)); 11412e9a14SMatthew G. Knepley switch (ct) { 12412e9a14SMatthew G. Knepley case DM_POLYTOPE_POINT_PRISM_TENSOR: 13412e9a14SMatthew G. Knepley case DM_POLYTOPE_SEG_PRISM_TENSOR: 14412e9a14SMatthew G. Knepley case DM_POLYTOPE_TRI_PRISM_TENSOR: 15412e9a14SMatthew G. Knepley case DM_POLYTOPE_QUAD_PRISM_TENSOR: 16412e9a14SMatthew G. Knepley *isHybrid = PETSC_TRUE; 17412e9a14SMatthew G. Knepley default: *isHybrid = PETSC_FALSE; 18412e9a14SMatthew G. Knepley } 19412e9a14SMatthew G. Knepley PetscFunctionReturn(0); 20412e9a14SMatthew G. Knepley } 21412e9a14SMatthew G. Knepley 22412e9a14SMatthew G. Knepley static PetscErrorCode DMPlexGetTensorPrismBounds_Internal(DM dm, PetscInt dim, PetscInt *cStart, PetscInt *cEnd) 23412e9a14SMatthew G. Knepley { 24412e9a14SMatthew G. Knepley DMLabel ctLabel; 25412e9a14SMatthew G. Knepley 26412e9a14SMatthew G. Knepley PetscFunctionBegin; 27412e9a14SMatthew G. Knepley if (cStart) *cStart = -1; 28412e9a14SMatthew G. Knepley if (cEnd) *cEnd = -1; 299566063dSJacob Faibussowitsch PetscCall(DMPlexGetCellTypeLabel(dm, &ctLabel)); 30412e9a14SMatthew G. Knepley switch (dim) { 319566063dSJacob Faibussowitsch case 1: PetscCall(DMLabelGetStratumBounds(ctLabel, DM_POLYTOPE_POINT_PRISM_TENSOR, cStart, cEnd));break; 329566063dSJacob Faibussowitsch case 2: PetscCall(DMLabelGetStratumBounds(ctLabel, DM_POLYTOPE_SEG_PRISM_TENSOR, cStart, cEnd));break; 33412e9a14SMatthew G. Knepley case 3: 349566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumBounds(ctLabel, DM_POLYTOPE_TRI_PRISM_TENSOR, cStart, cEnd)); 359566063dSJacob Faibussowitsch if (*cStart < 0) PetscCall(DMLabelGetStratumBounds(ctLabel, DM_POLYTOPE_QUAD_PRISM_TENSOR, cStart, cEnd)); 36412e9a14SMatthew G. Knepley break; 37412e9a14SMatthew G. Knepley default: PetscFunctionReturn(0); 38412e9a14SMatthew G. Knepley } 39412e9a14SMatthew G. Knepley PetscFunctionReturn(0); 40412e9a14SMatthew G. Knepley } 41412e9a14SMatthew G. Knepley 42e752be1aSMatthew G. Knepley static PetscErrorCode DMPlexMarkBoundaryFaces_Internal(DM dm, PetscInt val, PetscInt cellHeight, DMLabel label) 4330560a7bSMatthew G. Knepley { 4430560a7bSMatthew G. Knepley PetscInt fStart, fEnd, f; 4530560a7bSMatthew G. Knepley 4630560a7bSMatthew G. Knepley PetscFunctionBegin; 479566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(dm, cellHeight+1, &fStart, &fEnd)); 4830560a7bSMatthew G. Knepley for (f = fStart; f < fEnd; ++f) { 4930560a7bSMatthew G. Knepley PetscInt supportSize; 5030560a7bSMatthew G. Knepley 519566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dm, f, &supportSize)); 52e752be1aSMatthew G. Knepley if (supportSize == 1) { 53e752be1aSMatthew G. Knepley if (val < 0) { 54e752be1aSMatthew G. Knepley PetscInt *closure = NULL; 55e752be1aSMatthew G. Knepley PetscInt clSize, cl, cval; 56e752be1aSMatthew G. Knepley 579566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(dm, f, PETSC_TRUE, &clSize, &closure)); 58e752be1aSMatthew G. Knepley for (cl = 0; cl < clSize*2; cl += 2) { 599566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, closure[cl], &cval)); 60e752be1aSMatthew G. Knepley if (cval < 0) continue; 619566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(label, f, cval)); 62e752be1aSMatthew G. Knepley break; 63e752be1aSMatthew G. Knepley } 649566063dSJacob Faibussowitsch if (cl == clSize*2) PetscCall(DMLabelSetValue(label, f, 1)); 659566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dm, f, PETSC_TRUE, &clSize, &closure)); 66e752be1aSMatthew G. Knepley } else { 679566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(label, f, val)); 68e752be1aSMatthew G. Knepley } 69e752be1aSMatthew G. Knepley } 7030560a7bSMatthew G. Knepley } 7130560a7bSMatthew G. Knepley PetscFunctionReturn(0); 7230560a7bSMatthew G. Knepley } 7330560a7bSMatthew G. Knepley 74cd0c2139SMatthew G Knepley /*@ 75cd0c2139SMatthew G Knepley DMPlexMarkBoundaryFaces - Mark all faces on the boundary 76cd0c2139SMatthew G Knepley 77cd0c2139SMatthew G Knepley Not Collective 78cd0c2139SMatthew G Knepley 79d8d19677SJose E. Roman Input Parameters: 80e752be1aSMatthew G. Knepley + dm - The original DM 81e752be1aSMatthew G. Knepley - val - The marker value, or PETSC_DETERMINE to use some value in the closure (or 1 if none are found) 82cd0c2139SMatthew G Knepley 83cd0c2139SMatthew G Knepley Output Parameter: 84e752be1aSMatthew G. Knepley . label - The DMLabel marking boundary faces with the given value 85cd0c2139SMatthew G Knepley 86cd0c2139SMatthew G Knepley Level: developer 87cd0c2139SMatthew G Knepley 88c58f1c22SToby Isaac .seealso: DMLabelCreate(), DMCreateLabel() 8909f723d9SJed Brown @*/ 90e752be1aSMatthew G. Knepley PetscErrorCode DMPlexMarkBoundaryFaces(DM dm, PetscInt val, DMLabel label) 91cd0c2139SMatthew G Knepley { 92827c4036SVaclav Hapla DMPlexInterpolatedFlag flg; 93cd0c2139SMatthew G Knepley 94cd0c2139SMatthew G Knepley PetscFunctionBegin; 95827c4036SVaclav Hapla PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 969566063dSJacob Faibussowitsch PetscCall(DMPlexIsInterpolated(dm, &flg)); 9708401ef6SPierre Jolivet PetscCheck(flg == DMPLEX_INTERPOLATED_FULL,PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "DM is not fully interpolated on this rank"); 989566063dSJacob Faibussowitsch PetscCall(DMPlexMarkBoundaryFaces_Internal(dm, val, 0, label)); 99cd0c2139SMatthew G Knepley PetscFunctionReturn(0); 100cd0c2139SMatthew G Knepley } 101cd0c2139SMatthew G Knepley 102c08575a3SMatthew G. Knepley static PetscErrorCode DMPlexLabelComplete_Internal(DM dm, DMLabel label, PetscBool completeCells) 103b0bf5782SToby Isaac { 104b0bf5782SToby Isaac IS valueIS; 105ac51f24eSSander Arens PetscSF sfPoint; 106b0bf5782SToby Isaac const PetscInt *values; 107ac51f24eSSander Arens PetscInt numValues, v, cStart, cEnd, nroots; 108b0bf5782SToby Isaac 109b0bf5782SToby Isaac PetscFunctionBegin; 1109566063dSJacob Faibussowitsch PetscCall(DMLabelGetNumValues(label, &numValues)); 1119566063dSJacob Faibussowitsch PetscCall(DMLabelGetValueIS(label, &valueIS)); 1129566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(dm,0,&cStart,&cEnd)); 1139566063dSJacob Faibussowitsch PetscCall(ISGetIndices(valueIS, &values)); 114b0bf5782SToby Isaac for (v = 0; v < numValues; ++v) { 115b0bf5782SToby Isaac IS pointIS; 116b0bf5782SToby Isaac const PetscInt *points; 117b0bf5782SToby Isaac PetscInt numPoints, p; 118b0bf5782SToby Isaac 1199566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumSize(label, values[v], &numPoints)); 1209566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(label, values[v], &pointIS)); 1219566063dSJacob Faibussowitsch PetscCall(ISGetIndices(pointIS, &points)); 122b0bf5782SToby Isaac for (p = 0; p < numPoints; ++p) { 123b0bf5782SToby Isaac PetscInt q = points[p]; 124b0bf5782SToby Isaac PetscInt *closure = NULL; 125b0bf5782SToby Isaac PetscInt closureSize, c; 126b0bf5782SToby Isaac 127b0bf5782SToby Isaac if (cStart <= q && q < cEnd && !completeCells) { /* skip cells */ 128b0bf5782SToby Isaac continue; 129b0bf5782SToby Isaac } 1309566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(dm, q, PETSC_TRUE, &closureSize, &closure)); 131b0bf5782SToby Isaac for (c = 0; c < closureSize*2; c += 2) { 1329566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(label, closure[c], values[v])); 133b0bf5782SToby Isaac } 1349566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dm, q, PETSC_TRUE, &closureSize, &closure)); 135b0bf5782SToby Isaac } 1369566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(pointIS, &points)); 1379566063dSJacob Faibussowitsch PetscCall(ISDestroy(&pointIS)); 138b0bf5782SToby Isaac } 1399566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(valueIS, &values)); 1409566063dSJacob Faibussowitsch PetscCall(ISDestroy(&valueIS)); 1419566063dSJacob Faibussowitsch PetscCall(DMGetPointSF(dm, &sfPoint)); 1429566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(sfPoint, &nroots, NULL, NULL, NULL)); 143ac51f24eSSander Arens if (nroots >= 0) { 14426279d81SSanderA DMLabel lblRoots, lblLeaves; 14526279d81SSanderA IS valueIS, pointIS; 14626279d81SSanderA const PetscInt *values; 14726279d81SSanderA PetscInt numValues, v; 14826279d81SSanderA 14926279d81SSanderA /* Pull point contributions from remote leaves into local roots */ 1509566063dSJacob Faibussowitsch PetscCall(DMLabelGather(label, sfPoint, &lblLeaves)); 1519566063dSJacob Faibussowitsch PetscCall(DMLabelGetValueIS(lblLeaves, &valueIS)); 1529566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(valueIS, &numValues)); 1539566063dSJacob Faibussowitsch PetscCall(ISGetIndices(valueIS, &values)); 15426279d81SSanderA for (v = 0; v < numValues; ++v) { 15526279d81SSanderA const PetscInt value = values[v]; 15626279d81SSanderA 1579566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(lblLeaves, value, &pointIS)); 1589566063dSJacob Faibussowitsch PetscCall(DMLabelInsertIS(label, pointIS, value)); 1599566063dSJacob Faibussowitsch PetscCall(ISDestroy(&pointIS)); 16026279d81SSanderA } 1619566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(valueIS, &values)); 1629566063dSJacob Faibussowitsch PetscCall(ISDestroy(&valueIS)); 1639566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&lblLeaves)); 16426279d81SSanderA /* Push point contributions from roots into remote leaves */ 1659566063dSJacob Faibussowitsch PetscCall(DMLabelDistribute(label, sfPoint, &lblRoots)); 1669566063dSJacob Faibussowitsch PetscCall(DMLabelGetValueIS(lblRoots, &valueIS)); 1679566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(valueIS, &numValues)); 1689566063dSJacob Faibussowitsch PetscCall(ISGetIndices(valueIS, &values)); 16926279d81SSanderA for (v = 0; v < numValues; ++v) { 17026279d81SSanderA const PetscInt value = values[v]; 17126279d81SSanderA 1729566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(lblRoots, value, &pointIS)); 1739566063dSJacob Faibussowitsch PetscCall(DMLabelInsertIS(label, pointIS, value)); 1749566063dSJacob Faibussowitsch PetscCall(ISDestroy(&pointIS)); 17526279d81SSanderA } 1769566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(valueIS, &values)); 1779566063dSJacob Faibussowitsch PetscCall(ISDestroy(&valueIS)); 1789566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&lblRoots)); 17926279d81SSanderA } 180b0bf5782SToby Isaac PetscFunctionReturn(0); 181b0bf5782SToby Isaac } 182b0bf5782SToby Isaac 1832be2b188SMatthew G Knepley /*@ 1842be2b188SMatthew G Knepley DMPlexLabelComplete - Starting with a label marking points on a surface, we add the transitive closure to the surface 1852be2b188SMatthew G Knepley 1862be2b188SMatthew G Knepley Input Parameters: 1872be2b188SMatthew G Knepley + dm - The DM 1882be2b188SMatthew G Knepley - label - A DMLabel marking the surface points 1892be2b188SMatthew G Knepley 1902be2b188SMatthew G Knepley Output Parameter: 1912be2b188SMatthew G Knepley . label - A DMLabel marking all surface points in the transitive closure 1922be2b188SMatthew G Knepley 1932be2b188SMatthew G Knepley Level: developer 1942be2b188SMatthew G Knepley 1952be2b188SMatthew G Knepley .seealso: DMPlexLabelCohesiveComplete() 1962be2b188SMatthew G Knepley @*/ 1972be2b188SMatthew G Knepley PetscErrorCode DMPlexLabelComplete(DM dm, DMLabel label) 1982be2b188SMatthew G Knepley { 1992be2b188SMatthew G Knepley PetscFunctionBegin; 2009566063dSJacob Faibussowitsch PetscCall(DMPlexLabelComplete_Internal(dm, label, PETSC_TRUE)); 2012be2b188SMatthew G Knepley PetscFunctionReturn(0); 2022be2b188SMatthew G Knepley } 2032be2b188SMatthew G Knepley 2046cf0e42fSMatthew G. Knepley /*@ 205a6e0b375SMatthew G. Knepley DMPlexLabelAddCells - Starting with a label marking points on a surface, we add a cell for each point 2066cf0e42fSMatthew G. Knepley 2076cf0e42fSMatthew G. Knepley Input Parameters: 2086cf0e42fSMatthew G. Knepley + dm - The DM 2096cf0e42fSMatthew G. Knepley - label - A DMLabel marking the surface points 2106cf0e42fSMatthew G. Knepley 2116cf0e42fSMatthew G. Knepley Output Parameter: 2126cf0e42fSMatthew G. Knepley . label - A DMLabel incorporating cells 2136cf0e42fSMatthew G. Knepley 2146cf0e42fSMatthew G. Knepley Level: developer 2156cf0e42fSMatthew G. Knepley 2166cf0e42fSMatthew G. Knepley Note: The cells allow FEM boundary conditions to be applied using the cell geometry 2176cf0e42fSMatthew G. Knepley 218a6e0b375SMatthew G. Knepley .seealso: DMPlexLabelAddFaceCells(), DMPlexLabelComplete(), DMPlexLabelCohesiveComplete() 2196cf0e42fSMatthew G. Knepley @*/ 2206cf0e42fSMatthew G. Knepley PetscErrorCode DMPlexLabelAddCells(DM dm, DMLabel label) 2216cf0e42fSMatthew G. Knepley { 2226cf0e42fSMatthew G. Knepley IS valueIS; 2236cf0e42fSMatthew G. Knepley const PetscInt *values; 224485ad865SMatthew G. Knepley PetscInt numValues, v, cStart, cEnd; 2256cf0e42fSMatthew G. Knepley 2266cf0e42fSMatthew G. Knepley PetscFunctionBegin; 2279566063dSJacob Faibussowitsch PetscCall(DMPlexGetSimplexOrBoxCells(dm, 0, &cStart, &cEnd)); 2289566063dSJacob Faibussowitsch PetscCall(DMLabelGetNumValues(label, &numValues)); 2299566063dSJacob Faibussowitsch PetscCall(DMLabelGetValueIS(label, &valueIS)); 2309566063dSJacob Faibussowitsch PetscCall(ISGetIndices(valueIS, &values)); 2316cf0e42fSMatthew G. Knepley for (v = 0; v < numValues; ++v) { 2326cf0e42fSMatthew G. Knepley IS pointIS; 2336cf0e42fSMatthew G. Knepley const PetscInt *points; 2346cf0e42fSMatthew G. Knepley PetscInt numPoints, p; 2356cf0e42fSMatthew G. Knepley 2369566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumSize(label, values[v], &numPoints)); 2379566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(label, values[v], &pointIS)); 2389566063dSJacob Faibussowitsch PetscCall(ISGetIndices(pointIS, &points)); 2396cf0e42fSMatthew G. Knepley for (p = 0; p < numPoints; ++p) { 2406cf0e42fSMatthew G. Knepley PetscInt *closure = NULL; 241a6e0b375SMatthew G. Knepley PetscInt closureSize, cl; 2426cf0e42fSMatthew G. Knepley 2439566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(dm, points[p], PETSC_FALSE, &closureSize, &closure)); 24422eabd52SMatthew G. Knepley for (cl = closureSize-1; cl > 0; --cl) { 245a6e0b375SMatthew G. Knepley const PetscInt cell = closure[cl*2]; 2469566063dSJacob Faibussowitsch if ((cell >= cStart) && (cell < cEnd)) {PetscCall(DMLabelSetValue(label, cell, values[v])); break;} 24722eabd52SMatthew G. Knepley } 2489566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dm, points[p], PETSC_FALSE, &closureSize, &closure)); 2496cf0e42fSMatthew G. Knepley } 2509566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(pointIS, &points)); 2519566063dSJacob Faibussowitsch PetscCall(ISDestroy(&pointIS)); 2526cf0e42fSMatthew G. Knepley } 2539566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(valueIS, &values)); 2549566063dSJacob Faibussowitsch PetscCall(ISDestroy(&valueIS)); 2556cf0e42fSMatthew G. Knepley PetscFunctionReturn(0); 2566cf0e42fSMatthew G. Knepley } 2576cf0e42fSMatthew G. Knepley 258f402d5e4SToby Isaac /*@ 259a6e0b375SMatthew G. Knepley DMPlexLabelAddFaceCells - Starting with a label marking faces on a surface, we add a cell for each face 260a6e0b375SMatthew G. Knepley 261a6e0b375SMatthew G. Knepley Input Parameters: 262a6e0b375SMatthew G. Knepley + dm - The DM 263a6e0b375SMatthew G. Knepley - label - A DMLabel marking the surface points 264a6e0b375SMatthew G. Knepley 265a6e0b375SMatthew G. Knepley Output Parameter: 266a6e0b375SMatthew G. Knepley . label - A DMLabel incorporating cells 267a6e0b375SMatthew G. Knepley 268a6e0b375SMatthew G. Knepley Level: developer 269a6e0b375SMatthew G. Knepley 270a6e0b375SMatthew G. Knepley Note: The cells allow FEM boundary conditions to be applied using the cell geometry 271a6e0b375SMatthew G. Knepley 272a6e0b375SMatthew G. Knepley .seealso: DMPlexLabelAddCells(), DMPlexLabelComplete(), DMPlexLabelCohesiveComplete() 273a6e0b375SMatthew G. Knepley @*/ 274a6e0b375SMatthew G. Knepley PetscErrorCode DMPlexLabelAddFaceCells(DM dm, DMLabel label) 275a6e0b375SMatthew G. Knepley { 276a6e0b375SMatthew G. Knepley IS valueIS; 277a6e0b375SMatthew G. Knepley const PetscInt *values; 278a6e0b375SMatthew G. Knepley PetscInt numValues, v, cStart, cEnd, fStart, fEnd; 279a6e0b375SMatthew G. Knepley 280a6e0b375SMatthew G. Knepley PetscFunctionBegin; 2819566063dSJacob Faibussowitsch PetscCall(DMPlexGetSimplexOrBoxCells(dm, 0, &cStart, &cEnd)); 2829566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(dm, 1, &fStart, &fEnd)); 2839566063dSJacob Faibussowitsch PetscCall(DMLabelGetNumValues(label, &numValues)); 2849566063dSJacob Faibussowitsch PetscCall(DMLabelGetValueIS(label, &valueIS)); 2859566063dSJacob Faibussowitsch PetscCall(ISGetIndices(valueIS, &values)); 286a6e0b375SMatthew G. Knepley for (v = 0; v < numValues; ++v) { 287a6e0b375SMatthew G. Knepley IS pointIS; 288a6e0b375SMatthew G. Knepley const PetscInt *points; 289a6e0b375SMatthew G. Knepley PetscInt numPoints, p; 290a6e0b375SMatthew G. Knepley 2919566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumSize(label, values[v], &numPoints)); 2929566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(label, values[v], &pointIS)); 2939566063dSJacob Faibussowitsch PetscCall(ISGetIndices(pointIS, &points)); 294a6e0b375SMatthew G. Knepley for (p = 0; p < numPoints; ++p) { 295a6e0b375SMatthew G. Knepley const PetscInt face = points[p]; 296a6e0b375SMatthew G. Knepley PetscInt *closure = NULL; 297a6e0b375SMatthew G. Knepley PetscInt closureSize, cl; 298a6e0b375SMatthew G. Knepley 299a6e0b375SMatthew G. Knepley if ((face < fStart) || (face >= fEnd)) continue; 3009566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(dm, face, PETSC_FALSE, &closureSize, &closure)); 301a6e0b375SMatthew G. Knepley for (cl = closureSize-1; cl > 0; --cl) { 302a6e0b375SMatthew G. Knepley const PetscInt cell = closure[cl*2]; 3039566063dSJacob Faibussowitsch if ((cell >= cStart) && (cell < cEnd)) {PetscCall(DMLabelSetValue(label, cell, values[v])); break;} 304a6e0b375SMatthew G. Knepley } 3059566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dm, face, PETSC_FALSE, &closureSize, &closure)); 306a6e0b375SMatthew G. Knepley } 3079566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(pointIS, &points)); 3089566063dSJacob Faibussowitsch PetscCall(ISDestroy(&pointIS)); 309a6e0b375SMatthew G. Knepley } 3109566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(valueIS, &values)); 3119566063dSJacob Faibussowitsch PetscCall(ISDestroy(&valueIS)); 312a6e0b375SMatthew G. Knepley PetscFunctionReturn(0); 313a6e0b375SMatthew G. Knepley } 314a6e0b375SMatthew G. Knepley 315a6e0b375SMatthew G. Knepley /*@ 316f402d5e4SToby Isaac DMPlexLabelClearCells - Remove cells from a label 317f402d5e4SToby Isaac 318f402d5e4SToby Isaac Input Parameters: 319f402d5e4SToby Isaac + dm - The DM 320f402d5e4SToby Isaac - label - A DMLabel marking surface points and their adjacent cells 321f402d5e4SToby Isaac 322f402d5e4SToby Isaac Output Parameter: 323f402d5e4SToby Isaac . label - A DMLabel without cells 324f402d5e4SToby Isaac 325f402d5e4SToby Isaac Level: developer 326f402d5e4SToby Isaac 327a6e0b375SMatthew G. Knepley Note: This undoes DMPlexLabelAddCells() or DMPlexLabelAddFaceCells() 328f402d5e4SToby Isaac 329f402d5e4SToby Isaac .seealso: DMPlexLabelComplete(), DMPlexLabelCohesiveComplete(), DMPlexLabelAddCells() 330f402d5e4SToby Isaac @*/ 331f402d5e4SToby Isaac PetscErrorCode DMPlexLabelClearCells(DM dm, DMLabel label) 332f402d5e4SToby Isaac { 333f402d5e4SToby Isaac IS valueIS; 334f402d5e4SToby Isaac const PetscInt *values; 335485ad865SMatthew G. Knepley PetscInt numValues, v, cStart, cEnd; 336f402d5e4SToby Isaac 337f402d5e4SToby Isaac PetscFunctionBegin; 3389566063dSJacob Faibussowitsch PetscCall(DMPlexGetSimplexOrBoxCells(dm, 0, &cStart, &cEnd)); 3399566063dSJacob Faibussowitsch PetscCall(DMLabelGetNumValues(label, &numValues)); 3409566063dSJacob Faibussowitsch PetscCall(DMLabelGetValueIS(label, &valueIS)); 3419566063dSJacob Faibussowitsch PetscCall(ISGetIndices(valueIS, &values)); 342f402d5e4SToby Isaac for (v = 0; v < numValues; ++v) { 343f402d5e4SToby Isaac IS pointIS; 344f402d5e4SToby Isaac const PetscInt *points; 345f402d5e4SToby Isaac PetscInt numPoints, p; 346f402d5e4SToby Isaac 3479566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumSize(label, values[v], &numPoints)); 3489566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(label, values[v], &pointIS)); 3499566063dSJacob Faibussowitsch PetscCall(ISGetIndices(pointIS, &points)); 350f402d5e4SToby Isaac for (p = 0; p < numPoints; ++p) { 351f402d5e4SToby Isaac PetscInt point = points[p]; 352f402d5e4SToby Isaac 353f402d5e4SToby Isaac if (point >= cStart && point < cEnd) { 3549566063dSJacob Faibussowitsch PetscCall(DMLabelClearValue(label,point,values[v])); 355f402d5e4SToby Isaac } 356f402d5e4SToby Isaac } 3579566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(pointIS, &points)); 3589566063dSJacob Faibussowitsch PetscCall(ISDestroy(&pointIS)); 359f402d5e4SToby Isaac } 3609566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(valueIS, &values)); 3619566063dSJacob Faibussowitsch PetscCall(ISDestroy(&valueIS)); 362f402d5e4SToby Isaac PetscFunctionReturn(0); 363f402d5e4SToby Isaac } 364f402d5e4SToby Isaac 36559eef20bSToby Isaac /* take (oldEnd, added) pairs, ordered by height and convert them to (oldstart, newstart) pairs, ordered by ascending 36659eef20bSToby Isaac * index (skipping first, which is (0,0)) */ 3679fbee547SJacob Faibussowitsch static inline PetscErrorCode DMPlexShiftPointSetUp_Internal(PetscInt depth, PetscInt depthShift[]) 368cd0c2139SMatthew G Knepley { 3692582d50cSToby Isaac PetscInt d, off = 0; 3702582d50cSToby Isaac 3712582d50cSToby Isaac PetscFunctionBegin; 37259eef20bSToby Isaac /* sort by (oldend): yes this is an O(n^2) sort, we expect depth <= 3 */ 3730974a383SToby Isaac for (d = 0; d < depth; d++) { 3742582d50cSToby Isaac PetscInt firstd = d; 3750974a383SToby Isaac PetscInt firstStart = depthShift[2*d]; 3762582d50cSToby Isaac PetscInt e; 3772582d50cSToby Isaac 3782582d50cSToby Isaac for (e = d+1; e <= depth; e++) { 3792582d50cSToby Isaac if (depthShift[2*e] < firstStart) { 3802582d50cSToby Isaac firstd = e; 3812582d50cSToby Isaac firstStart = depthShift[2*d]; 3822582d50cSToby Isaac } 3832582d50cSToby Isaac } 3842582d50cSToby Isaac if (firstd != d) { 3852582d50cSToby Isaac PetscInt swap[2]; 3862582d50cSToby Isaac 3872582d50cSToby Isaac e = firstd; 3882582d50cSToby Isaac swap[0] = depthShift[2*d]; 3892582d50cSToby Isaac swap[1] = depthShift[2*d+1]; 3902582d50cSToby Isaac depthShift[2*d] = depthShift[2*e]; 3912582d50cSToby Isaac depthShift[2*d+1] = depthShift[2*e+1]; 3922582d50cSToby Isaac depthShift[2*e] = swap[0]; 3932582d50cSToby Isaac depthShift[2*e+1] = swap[1]; 3942582d50cSToby Isaac } 3952582d50cSToby Isaac } 3962582d50cSToby Isaac /* convert (oldstart, added) to (oldstart, newstart) */ 3970974a383SToby Isaac for (d = 0; d <= depth; d++) { 3982582d50cSToby Isaac off += depthShift[2*d+1]; 39959eef20bSToby Isaac depthShift[2*d+1] = depthShift[2*d] + off; 4002582d50cSToby Isaac } 4012582d50cSToby Isaac PetscFunctionReturn(0); 4022582d50cSToby Isaac } 4032582d50cSToby Isaac 4042582d50cSToby Isaac /* depthShift is a list of (old, new) pairs */ 4059fbee547SJacob Faibussowitsch static inline PetscInt DMPlexShiftPoint_Internal(PetscInt p, PetscInt depth, PetscInt depthShift[]) 4062582d50cSToby Isaac { 4072582d50cSToby Isaac PetscInt d; 4082582d50cSToby Isaac PetscInt newOff = 0; 4092582d50cSToby Isaac 4102582d50cSToby Isaac for (d = 0; d <= depth; d++) { 4112582d50cSToby Isaac if (p < depthShift[2*d]) return p + newOff; 4122582d50cSToby Isaac else newOff = depthShift[2*d+1] - depthShift[2*d]; 4132582d50cSToby Isaac } 4140974a383SToby Isaac return p + newOff; 4152582d50cSToby Isaac } 4162582d50cSToby Isaac 4172582d50cSToby Isaac /* depthShift is a list of (old, new) pairs */ 4189fbee547SJacob Faibussowitsch static inline PetscInt DMPlexShiftPointInverse_Internal(PetscInt p, PetscInt depth, PetscInt depthShift[]) 4192582d50cSToby Isaac { 4202582d50cSToby Isaac PetscInt d; 4212582d50cSToby Isaac PetscInt newOff = 0; 4222582d50cSToby Isaac 4232582d50cSToby Isaac for (d = 0; d <= depth; d++) { 4242582d50cSToby Isaac if (p < depthShift[2*d+1]) return p + newOff; 4252582d50cSToby Isaac else newOff = depthShift[2*d] - depthShift[2*d+1]; 4262582d50cSToby Isaac } 4270974a383SToby Isaac return p + newOff; 428cd0c2139SMatthew G Knepley } 429cd0c2139SMatthew G Knepley 430cd0c2139SMatthew G Knepley static PetscErrorCode DMPlexShiftSizes_Internal(DM dm, PetscInt depthShift[], DM dmNew) 431cd0c2139SMatthew G Knepley { 432cd0c2139SMatthew G Knepley PetscInt depth = 0, d, pStart, pEnd, p; 433fa8e8ae5SToby Isaac DMLabel depthLabel; 434cd0c2139SMatthew G Knepley 435cd0c2139SMatthew G Knepley PetscFunctionBegin; 4369566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepth(dm, &depth)); 437cd0c2139SMatthew G Knepley if (depth < 0) PetscFunctionReturn(0); 438cd0c2139SMatthew G Knepley /* Step 1: Expand chart */ 4399566063dSJacob Faibussowitsch PetscCall(DMPlexGetChart(dm, &pStart, &pEnd)); 4400974a383SToby Isaac pEnd = DMPlexShiftPoint_Internal(pEnd,depth,depthShift); 4419566063dSJacob Faibussowitsch PetscCall(DMPlexSetChart(dmNew, pStart, pEnd)); 4429566063dSJacob Faibussowitsch PetscCall(DMCreateLabel(dmNew,"depth")); 4439566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthLabel(dmNew,&depthLabel)); 4449566063dSJacob Faibussowitsch PetscCall(DMCreateLabel(dmNew, "celltype")); 445cd0c2139SMatthew G Knepley /* Step 2: Set cone and support sizes */ 446cd0c2139SMatthew G Knepley for (d = 0; d <= depth; ++d) { 447fa8e8ae5SToby Isaac PetscInt pStartNew, pEndNew; 448fa8e8ae5SToby Isaac IS pIS; 449fa8e8ae5SToby Isaac 4509566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthStratum(dm, d, &pStart, &pEnd)); 451fa8e8ae5SToby Isaac pStartNew = DMPlexShiftPoint_Internal(pStart, depth, depthShift); 452fa8e8ae5SToby Isaac pEndNew = DMPlexShiftPoint_Internal(pEnd, depth, depthShift); 4539566063dSJacob Faibussowitsch PetscCall(ISCreateStride(PETSC_COMM_SELF, pEndNew - pStartNew, pStartNew, 1, &pIS)); 4549566063dSJacob Faibussowitsch PetscCall(DMLabelSetStratumIS(depthLabel, d, pIS)); 4559566063dSJacob Faibussowitsch PetscCall(ISDestroy(&pIS)); 456cd0c2139SMatthew G Knepley for (p = pStart; p < pEnd; ++p) { 4572582d50cSToby Isaac PetscInt newp = DMPlexShiftPoint_Internal(p, depth, depthShift); 458cd0c2139SMatthew G Knepley PetscInt size; 459412e9a14SMatthew G. Knepley DMPolytopeType ct; 460cd0c2139SMatthew G Knepley 4619566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, p, &size)); 4629566063dSJacob Faibussowitsch PetscCall(DMPlexSetConeSize(dmNew, newp, size)); 4639566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dm, p, &size)); 4649566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupportSize(dmNew, newp, size)); 4659566063dSJacob Faibussowitsch PetscCall(DMPlexGetCellType(dm, p, &ct)); 4669566063dSJacob Faibussowitsch PetscCall(DMPlexSetCellType(dmNew, newp, ct)); 467cd0c2139SMatthew G Knepley } 468cd0c2139SMatthew G Knepley } 469cd0c2139SMatthew G Knepley PetscFunctionReturn(0); 470cd0c2139SMatthew G Knepley } 471cd0c2139SMatthew G Knepley 472cd0c2139SMatthew G Knepley static PetscErrorCode DMPlexShiftPoints_Internal(DM dm, PetscInt depthShift[], DM dmNew) 473cd0c2139SMatthew G Knepley { 4742582d50cSToby Isaac PetscInt *newpoints; 4752582d50cSToby Isaac PetscInt depth = 0, maxConeSize, maxSupportSize, maxConeSizeNew, maxSupportSizeNew, pStart, pEnd, p; 476cd0c2139SMatthew G Knepley 477cd0c2139SMatthew G Knepley PetscFunctionBegin; 4789566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepth(dm, &depth)); 479cd0c2139SMatthew G Knepley if (depth < 0) PetscFunctionReturn(0); 4809566063dSJacob Faibussowitsch PetscCall(DMPlexGetMaxSizes(dm, &maxConeSize, &maxSupportSize)); 4819566063dSJacob Faibussowitsch PetscCall(DMPlexGetMaxSizes(dmNew, &maxConeSizeNew, &maxSupportSizeNew)); 4829566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(PetscMax(PetscMax(maxConeSize, maxSupportSize), PetscMax(maxConeSizeNew, maxSupportSizeNew)),&newpoints)); 483cd0c2139SMatthew G Knepley /* Step 5: Set cones and supports */ 4849566063dSJacob Faibussowitsch PetscCall(DMPlexGetChart(dm, &pStart, &pEnd)); 485cd0c2139SMatthew G Knepley for (p = pStart; p < pEnd; ++p) { 486cd0c2139SMatthew G Knepley const PetscInt *points = NULL, *orientations = NULL; 4872582d50cSToby Isaac PetscInt size,sizeNew, i, newp = DMPlexShiftPoint_Internal(p, depth, depthShift); 488cd0c2139SMatthew G Knepley 4899566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, p, &size)); 4909566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, p, &points)); 4919566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeOrientation(dm, p, &orientations)); 492cd0c2139SMatthew G Knepley for (i = 0; i < size; ++i) { 4932582d50cSToby Isaac newpoints[i] = DMPlexShiftPoint_Internal(points[i], depth, depthShift); 494cd0c2139SMatthew G Knepley } 4959566063dSJacob Faibussowitsch PetscCall(DMPlexSetCone(dmNew, newp, newpoints)); 4969566063dSJacob Faibussowitsch PetscCall(DMPlexSetConeOrientation(dmNew, newp, orientations)); 4979566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dm, p, &size)); 4989566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dmNew, newp, &sizeNew)); 4999566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(dm, p, &points)); 500cd0c2139SMatthew G Knepley for (i = 0; i < size; ++i) { 5012582d50cSToby Isaac newpoints[i] = DMPlexShiftPoint_Internal(points[i], depth, depthShift); 502cd0c2139SMatthew G Knepley } 503dcbb62e8SMatthew G. Knepley for (i = size; i < sizeNew; ++i) newpoints[i] = 0; 5049566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupport(dmNew, newp, newpoints)); 505cd0c2139SMatthew G Knepley } 5069566063dSJacob Faibussowitsch PetscCall(PetscFree(newpoints)); 507cd0c2139SMatthew G Knepley PetscFunctionReturn(0); 508cd0c2139SMatthew G Knepley } 509cd0c2139SMatthew G Knepley 510cd0c2139SMatthew G Knepley static PetscErrorCode DMPlexShiftCoordinates_Internal(DM dm, PetscInt depthShift[], DM dmNew) 511cd0c2139SMatthew G Knepley { 512cd0c2139SMatthew G Knepley PetscSection coordSection, newCoordSection; 513cd0c2139SMatthew G Knepley Vec coordinates, newCoordinates; 514cd0c2139SMatthew G Knepley PetscScalar *coords, *newCoords; 515f2b8cce1SMatthew G. Knepley PetscInt coordSize, sStart, sEnd; 516f2b8cce1SMatthew G. Knepley PetscInt dim, depth = 0, cStart, cEnd, cStartNew, cEndNew, c, vStart, vEnd, vStartNew, vEndNew, v; 517f2b8cce1SMatthew G. Knepley PetscBool hasCells; 518cd0c2139SMatthew G Knepley 519cd0c2139SMatthew G Knepley PetscFunctionBegin; 5209566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDim(dm, &dim)); 5219566063dSJacob Faibussowitsch PetscCall(DMSetCoordinateDim(dmNew, dim)); 5229566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepth(dm, &depth)); 523cd0c2139SMatthew G Knepley /* Step 8: Convert coordinates */ 5249566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthStratum(dm, 0, &vStart, &vEnd)); 5259566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(dm, 0, &cStart, &cEnd)); 5269566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthStratum(dmNew, 0, &vStartNew, &vEndNew)); 5279566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(dmNew, 0, &cStartNew, &cEndNew)); 5289566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateSection(dm, &coordSection)); 5299566063dSJacob Faibussowitsch PetscCall(PetscSectionCreate(PetscObjectComm((PetscObject)dm), &newCoordSection)); 5309566063dSJacob Faibussowitsch PetscCall(PetscSectionSetNumFields(newCoordSection, 1)); 5319566063dSJacob Faibussowitsch PetscCall(PetscSectionSetFieldComponents(newCoordSection, 0, dim)); 5329566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(coordSection, &sStart, &sEnd)); 533f2b8cce1SMatthew G. Knepley hasCells = sStart == cStart ? PETSC_TRUE : PETSC_FALSE; 5349566063dSJacob Faibussowitsch PetscCall(PetscSectionSetChart(newCoordSection, hasCells ? cStartNew : vStartNew, vEndNew)); 535f2b8cce1SMatthew G. Knepley if (hasCells) { 536f2b8cce1SMatthew G. Knepley for (c = cStart; c < cEnd; ++c) { 537f2b8cce1SMatthew G. Knepley PetscInt cNew = DMPlexShiftPoint_Internal(c, depth, depthShift), dof; 538f2b8cce1SMatthew G. Knepley 5399566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(coordSection, c, &dof)); 5409566063dSJacob Faibussowitsch PetscCall(PetscSectionSetDof(newCoordSection, cNew, dof)); 5419566063dSJacob Faibussowitsch PetscCall(PetscSectionSetFieldDof(newCoordSection, cNew, 0, dof)); 542f2b8cce1SMatthew G. Knepley } 543f2b8cce1SMatthew G. Knepley } 544cd0c2139SMatthew G Knepley for (v = vStartNew; v < vEndNew; ++v) { 5459566063dSJacob Faibussowitsch PetscCall(PetscSectionSetDof(newCoordSection, v, dim)); 5469566063dSJacob Faibussowitsch PetscCall(PetscSectionSetFieldDof(newCoordSection, v, 0, dim)); 547cd0c2139SMatthew G Knepley } 5489566063dSJacob Faibussowitsch PetscCall(PetscSectionSetUp(newCoordSection)); 5499566063dSJacob Faibussowitsch PetscCall(DMSetCoordinateSection(dmNew, PETSC_DETERMINE, newCoordSection)); 5509566063dSJacob Faibussowitsch PetscCall(PetscSectionGetStorageSize(newCoordSection, &coordSize)); 5519566063dSJacob Faibussowitsch PetscCall(VecCreate(PETSC_COMM_SELF, &newCoordinates)); 5529566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject) newCoordinates, "coordinates")); 5539566063dSJacob Faibussowitsch PetscCall(VecSetSizes(newCoordinates, coordSize, PETSC_DETERMINE)); 5549566063dSJacob Faibussowitsch PetscCall(VecSetBlockSize(newCoordinates, dim)); 5559566063dSJacob Faibussowitsch PetscCall(VecSetType(newCoordinates,VECSTANDARD)); 5569566063dSJacob Faibussowitsch PetscCall(DMSetCoordinatesLocal(dmNew, newCoordinates)); 5579566063dSJacob Faibussowitsch PetscCall(DMGetCoordinatesLocal(dm, &coordinates)); 5589566063dSJacob Faibussowitsch PetscCall(VecGetArray(coordinates, &coords)); 5599566063dSJacob Faibussowitsch PetscCall(VecGetArray(newCoordinates, &newCoords)); 560f2b8cce1SMatthew G. Knepley if (hasCells) { 561f2b8cce1SMatthew G. Knepley for (c = cStart; c < cEnd; ++c) { 562f2b8cce1SMatthew G. Knepley PetscInt cNew = DMPlexShiftPoint_Internal(c, depth, depthShift), dof, off, noff, d; 563f2b8cce1SMatthew G. Knepley 5649566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(coordSection, c, &dof)); 5659566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(coordSection, c, &off)); 5669566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(newCoordSection, cNew, &noff)); 567f2b8cce1SMatthew G. Knepley for (d = 0; d < dof; ++d) newCoords[noff+d] = coords[off+d]; 568f2b8cce1SMatthew G. Knepley } 569f2b8cce1SMatthew G. Knepley } 570cd0c2139SMatthew G Knepley for (v = vStart; v < vEnd; ++v) { 571cd0c2139SMatthew G Knepley PetscInt dof, off, noff, d; 572cd0c2139SMatthew G Knepley 5739566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(coordSection, v, &dof)); 5749566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(coordSection, v, &off)); 5759566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(newCoordSection, DMPlexShiftPoint_Internal(v, depth, depthShift), &noff)); 576f2b8cce1SMatthew G. Knepley for (d = 0; d < dof; ++d) newCoords[noff+d] = coords[off+d]; 577cd0c2139SMatthew G Knepley } 5789566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(coordinates, &coords)); 5799566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(newCoordinates, &newCoords)); 5809566063dSJacob Faibussowitsch PetscCall(VecDestroy(&newCoordinates)); 5819566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&newCoordSection)); 582cd0c2139SMatthew G Knepley PetscFunctionReturn(0); 583cd0c2139SMatthew G Knepley } 584cd0c2139SMatthew G Knepley 5850e33faafSMatthew G. Knepley static PetscErrorCode DMPlexShiftSF_Single(DM dm, PetscInt depthShift[], PetscSF sf, PetscSF sfNew) 586cd0c2139SMatthew G Knepley { 587cd0c2139SMatthew G Knepley const PetscSFNode *remotePoints; 588cd0c2139SMatthew G Knepley PetscSFNode *gremotePoints; 589cd0c2139SMatthew G Knepley const PetscInt *localPoints; 590cd0c2139SMatthew G Knepley PetscInt *glocalPoints, *newLocation, *newRemoteLocation; 5910e33faafSMatthew G. Knepley PetscInt numRoots, numLeaves, l, pStart, pEnd, depth = 0, totShift = 0; 592cd0c2139SMatthew G Knepley 593cd0c2139SMatthew G Knepley PetscFunctionBegin; 5949566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepth(dm, &depth)); 5959566063dSJacob Faibussowitsch PetscCall(DMPlexGetChart(dm, &pStart, &pEnd)); 5969566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(sf, &numRoots, &numLeaves, &localPoints, &remotePoints)); 5976e21efdcSToby Isaac totShift = DMPlexShiftPoint_Internal(pEnd, depth, depthShift) - pEnd; 598cd0c2139SMatthew G Knepley if (numRoots >= 0) { 5999566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(numRoots, &newLocation, pEnd-pStart, &newRemoteLocation)); 6000e33faafSMatthew G. Knepley for (l = 0; l < numRoots; ++l) newLocation[l] = DMPlexShiftPoint_Internal(l, depth, depthShift); 6019566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(sf, MPIU_INT, newLocation, newRemoteLocation, MPI_REPLACE)); 6029566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(sf, MPIU_INT, newLocation, newRemoteLocation, MPI_REPLACE)); 6039566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(numLeaves, &glocalPoints)); 6049566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(numLeaves, &gremotePoints)); 605cd0c2139SMatthew G Knepley for (l = 0; l < numLeaves; ++l) { 6062582d50cSToby Isaac glocalPoints[l] = DMPlexShiftPoint_Internal(localPoints[l], depth, depthShift); 607cd0c2139SMatthew G Knepley gremotePoints[l].rank = remotePoints[l].rank; 608cd0c2139SMatthew G Knepley gremotePoints[l].index = newRemoteLocation[localPoints[l]]; 609cd0c2139SMatthew G Knepley } 6109566063dSJacob Faibussowitsch PetscCall(PetscFree2(newLocation, newRemoteLocation)); 6119566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(sfNew, numRoots + totShift, numLeaves, glocalPoints, PETSC_OWN_POINTER, gremotePoints, PETSC_OWN_POINTER)); 6120e33faafSMatthew G. Knepley } 6130e33faafSMatthew G. Knepley PetscFunctionReturn(0); 6140e33faafSMatthew G. Knepley } 6150e33faafSMatthew G. Knepley 6160e33faafSMatthew G. Knepley static PetscErrorCode DMPlexShiftSF_Internal(DM dm, PetscInt depthShift[], DM dmNew) 6170e33faafSMatthew G. Knepley { 6180e33faafSMatthew G. Knepley PetscSF sfPoint, sfPointNew; 6190e33faafSMatthew G. Knepley PetscBool useNatural; 6200e33faafSMatthew G. Knepley 6210e33faafSMatthew G. Knepley PetscFunctionBegin; 6220e33faafSMatthew G. Knepley /* Step 9: Convert pointSF */ 6239566063dSJacob Faibussowitsch PetscCall(DMGetPointSF(dm, &sfPoint)); 6249566063dSJacob Faibussowitsch PetscCall(DMGetPointSF(dmNew, &sfPointNew)); 6259566063dSJacob Faibussowitsch PetscCall(DMPlexShiftSF_Single(dm, depthShift, sfPoint, sfPointNew)); 6260e33faafSMatthew G. Knepley /* Step 9b: Convert naturalSF */ 6279566063dSJacob Faibussowitsch PetscCall(DMGetUseNatural(dm, &useNatural)); 6280e33faafSMatthew G. Knepley if (useNatural) { 6290e33faafSMatthew G. Knepley PetscSF sfNat, sfNatNew; 6300e33faafSMatthew G. Knepley 6319566063dSJacob Faibussowitsch PetscCall(DMSetUseNatural(dmNew, useNatural)); 6329566063dSJacob Faibussowitsch PetscCall(DMGetNaturalSF(dm, &sfNat)); 6339566063dSJacob Faibussowitsch PetscCall(DMGetNaturalSF(dmNew, &sfNatNew)); 6349566063dSJacob Faibussowitsch PetscCall(DMPlexShiftSF_Single(dm, depthShift, sfNat, sfNatNew)); 635cd0c2139SMatthew G Knepley } 636cd0c2139SMatthew G Knepley PetscFunctionReturn(0); 637cd0c2139SMatthew G Knepley } 638cd0c2139SMatthew G Knepley 639cd0c2139SMatthew G Knepley static PetscErrorCode DMPlexShiftLabels_Internal(DM dm, PetscInt depthShift[], DM dmNew) 640cd0c2139SMatthew G Knepley { 641d56405f8SMatthew G. Knepley PetscInt depth = 0, numLabels, l; 642cd0c2139SMatthew G Knepley 643cd0c2139SMatthew G Knepley PetscFunctionBegin; 6449566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepth(dm, &depth)); 645cd0c2139SMatthew G Knepley /* Step 10: Convert labels */ 6469566063dSJacob Faibussowitsch PetscCall(DMGetNumLabels(dm, &numLabels)); 647cd0c2139SMatthew G Knepley for (l = 0; l < numLabels; ++l) { 648cd0c2139SMatthew G Knepley DMLabel label, newlabel; 649cd0c2139SMatthew G Knepley const char *lname; 650fa8e8ae5SToby Isaac PetscBool isDepth, isDim; 651cd0c2139SMatthew G Knepley IS valueIS; 652cd0c2139SMatthew G Knepley const PetscInt *values; 653cd0c2139SMatthew G Knepley PetscInt numValues, val; 654cd0c2139SMatthew G Knepley 6559566063dSJacob Faibussowitsch PetscCall(DMGetLabelName(dm, l, &lname)); 6569566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(lname, "depth", &isDepth)); 657cd0c2139SMatthew G Knepley if (isDepth) continue; 6589566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(lname, "dim", &isDim)); 659fa8e8ae5SToby Isaac if (isDim) continue; 6609566063dSJacob Faibussowitsch PetscCall(DMCreateLabel(dmNew, lname)); 6619566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, lname, &label)); 6629566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dmNew, lname, &newlabel)); 6639566063dSJacob Faibussowitsch PetscCall(DMLabelGetDefaultValue(label,&val)); 6649566063dSJacob Faibussowitsch PetscCall(DMLabelSetDefaultValue(newlabel,val)); 6659566063dSJacob Faibussowitsch PetscCall(DMLabelGetValueIS(label, &valueIS)); 6669566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(valueIS, &numValues)); 6679566063dSJacob Faibussowitsch PetscCall(ISGetIndices(valueIS, &values)); 668cd0c2139SMatthew G Knepley for (val = 0; val < numValues; ++val) { 669cd0c2139SMatthew G Knepley IS pointIS; 670cd0c2139SMatthew G Knepley const PetscInt *points; 671cd0c2139SMatthew G Knepley PetscInt numPoints, p; 672cd0c2139SMatthew G Knepley 6739566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(label, values[val], &pointIS)); 6749566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(pointIS, &numPoints)); 6759566063dSJacob Faibussowitsch PetscCall(ISGetIndices(pointIS, &points)); 676cd0c2139SMatthew G Knepley for (p = 0; p < numPoints; ++p) { 6772582d50cSToby Isaac const PetscInt newpoint = DMPlexShiftPoint_Internal(points[p], depth, depthShift); 678cd0c2139SMatthew G Knepley 6799566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(newlabel, newpoint, values[val])); 680cd0c2139SMatthew G Knepley } 6819566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(pointIS, &points)); 6829566063dSJacob Faibussowitsch PetscCall(ISDestroy(&pointIS)); 683cd0c2139SMatthew G Knepley } 6849566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(valueIS, &values)); 6859566063dSJacob Faibussowitsch PetscCall(ISDestroy(&valueIS)); 686cd0c2139SMatthew G Knepley } 687d56405f8SMatthew G. Knepley PetscFunctionReturn(0); 688d56405f8SMatthew G. Knepley } 689d56405f8SMatthew G. Knepley 690d56405f8SMatthew G. Knepley static PetscErrorCode DMPlexCreateVTKLabel_Internal(DM dm, PetscBool createGhostLabel, DM dmNew) 691d56405f8SMatthew G. Knepley { 692d56405f8SMatthew G. Knepley PetscSF sfPoint; 693d56405f8SMatthew G. Knepley DMLabel vtkLabel, ghostLabel = NULL; 694d56405f8SMatthew G. Knepley const PetscSFNode *leafRemote; 695d56405f8SMatthew G. Knepley const PetscInt *leafLocal; 696d56405f8SMatthew G. Knepley PetscInt cellHeight, cStart, cEnd, c, fStart, fEnd, f, numLeaves, l; 697d56405f8SMatthew G. Knepley PetscMPIInt rank; 698d56405f8SMatthew G. Knepley 699d56405f8SMatthew G. Knepley PetscFunctionBegin; 700cd0c2139SMatthew G Knepley /* Step 11: Make label for output (vtk) and to mark ghost points (ghost) */ 7019566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)dm), &rank)); 7029566063dSJacob Faibussowitsch PetscCall(DMGetPointSF(dm, &sfPoint)); 7039566063dSJacob Faibussowitsch PetscCall(DMPlexGetVTKCellHeight(dmNew, &cellHeight)); 7049566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(dm, cellHeight, &cStart, &cEnd)); 7059566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(sfPoint, NULL, &numLeaves, &leafLocal, &leafRemote)); 7069566063dSJacob Faibussowitsch PetscCall(DMCreateLabel(dmNew, "vtk")); 7079566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dmNew, "vtk", &vtkLabel)); 708d56405f8SMatthew G. Knepley if (createGhostLabel) { 7099566063dSJacob Faibussowitsch PetscCall(DMCreateLabel(dmNew, "ghost")); 7109566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dmNew, "ghost", &ghostLabel)); 711d56405f8SMatthew G. Knepley } 712cd0c2139SMatthew G Knepley for (l = 0, c = cStart; l < numLeaves && c < cEnd; ++l, ++c) { 713cd0c2139SMatthew G Knepley for (; c < leafLocal[l] && c < cEnd; ++c) { 7149566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(vtkLabel, c, 1)); 715cd0c2139SMatthew G Knepley } 716cd0c2139SMatthew G Knepley if (leafLocal[l] >= cEnd) break; 717cd0c2139SMatthew G Knepley if (leafRemote[l].rank == rank) { 7189566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(vtkLabel, c, 1)); 719d56405f8SMatthew G. Knepley } else if (ghostLabel) { 7209566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(ghostLabel, c, 2)); 721cd0c2139SMatthew G Knepley } 722cd0c2139SMatthew G Knepley } 723cd0c2139SMatthew G Knepley for (; c < cEnd; ++c) { 7249566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(vtkLabel, c, 1)); 725cd0c2139SMatthew G Knepley } 726d56405f8SMatthew G. Knepley if (ghostLabel) { 7279566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(dmNew, 1, &fStart, &fEnd)); 728cd0c2139SMatthew G Knepley for (f = fStart; f < fEnd; ++f) { 729cd0c2139SMatthew G Knepley PetscInt numCells; 730cd0c2139SMatthew G Knepley 7319566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dmNew, f, &numCells)); 732cd0c2139SMatthew G Knepley if (numCells < 2) { 7339566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(ghostLabel, f, 1)); 734cd0c2139SMatthew G Knepley } else { 735cd0c2139SMatthew G Knepley const PetscInt *cells = NULL; 736cd0c2139SMatthew G Knepley PetscInt vA, vB; 737cd0c2139SMatthew G Knepley 7389566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(dmNew, f, &cells)); 7399566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(vtkLabel, cells[0], &vA)); 7409566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(vtkLabel, cells[1], &vB)); 7419566063dSJacob Faibussowitsch if (vA != 1 && vB != 1) PetscCall(DMLabelSetValue(ghostLabel, f, 1)); 742cd0c2139SMatthew G Knepley } 743cd0c2139SMatthew G Knepley } 744d56405f8SMatthew G. Knepley } 745cd0c2139SMatthew G Knepley PetscFunctionReturn(0); 746cd0c2139SMatthew G Knepley } 747cd0c2139SMatthew G Knepley 748ca04dac2SToby Isaac static PetscErrorCode DMPlexShiftTree_Internal(DM dm, PetscInt depthShift[], DM dmNew) 749ca04dac2SToby Isaac { 750ca04dac2SToby Isaac DM refTree; 751ca04dac2SToby Isaac PetscSection pSec; 752ca04dac2SToby Isaac PetscInt *parents, *childIDs; 753ca04dac2SToby Isaac 754ca04dac2SToby Isaac PetscFunctionBegin; 7559566063dSJacob Faibussowitsch PetscCall(DMPlexGetReferenceTree(dm,&refTree)); 7569566063dSJacob Faibussowitsch PetscCall(DMPlexSetReferenceTree(dmNew,refTree)); 7579566063dSJacob Faibussowitsch PetscCall(DMPlexGetTree(dm,&pSec,&parents,&childIDs,NULL,NULL)); 758ca04dac2SToby Isaac if (pSec) { 7592582d50cSToby Isaac PetscInt p, pStart, pEnd, *parentsShifted, pStartShifted, pEndShifted, depth; 760fb4630b5SToby Isaac PetscInt *childIDsShifted; 761ca04dac2SToby Isaac PetscSection pSecShifted; 762ca04dac2SToby Isaac 7639566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(pSec,&pStart,&pEnd)); 7649566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepth(dm,&depth)); 7652582d50cSToby Isaac pStartShifted = DMPlexShiftPoint_Internal(pStart,depth,depthShift); 7662582d50cSToby Isaac pEndShifted = DMPlexShiftPoint_Internal(pEnd,depth,depthShift); 7679566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(pEndShifted - pStartShifted,&parentsShifted,pEndShifted-pStartShifted,&childIDsShifted)); 7689566063dSJacob Faibussowitsch PetscCall(PetscSectionCreate(PetscObjectComm((PetscObject)dmNew),&pSecShifted)); 7699566063dSJacob Faibussowitsch PetscCall(PetscSectionSetChart(pSecShifted,pStartShifted,pEndShifted)); 770ca04dac2SToby Isaac for (p = pStartShifted; p < pEndShifted; p++) { 771fb4630b5SToby Isaac /* start off assuming no children */ 7729566063dSJacob Faibussowitsch PetscCall(PetscSectionSetDof(pSecShifted,p,0)); 773fb4630b5SToby Isaac } 774fb4630b5SToby Isaac for (p = pStart; p < pEnd; p++) { 775fb4630b5SToby Isaac PetscInt dof; 776fb4630b5SToby Isaac PetscInt pNew = DMPlexShiftPoint_Internal(p,depth,depthShift); 777ca04dac2SToby Isaac 7789566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(pSec,p,&dof)); 7799566063dSJacob Faibussowitsch PetscCall(PetscSectionSetDof(pSecShifted,pNew,dof)); 780ca04dac2SToby Isaac } 7819566063dSJacob Faibussowitsch PetscCall(PetscSectionSetUp(pSecShifted)); 782fb4630b5SToby Isaac for (p = pStart; p < pEnd; p++) { 783fb4630b5SToby Isaac PetscInt dof; 784fb4630b5SToby Isaac PetscInt pNew = DMPlexShiftPoint_Internal(p,depth,depthShift); 785fb4630b5SToby Isaac 7869566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(pSec,p,&dof)); 787fb4630b5SToby Isaac if (dof) { 788fb4630b5SToby Isaac PetscInt off, offNew; 789fb4630b5SToby Isaac 7909566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(pSec,p,&off)); 7919566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(pSecShifted,pNew,&offNew)); 792fb4630b5SToby Isaac parentsShifted[offNew] = DMPlexShiftPoint_Internal(parents[off],depth,depthShift); 793fb4630b5SToby Isaac childIDsShifted[offNew] = childIDs[off]; 794fb4630b5SToby Isaac } 795fb4630b5SToby Isaac } 7969566063dSJacob Faibussowitsch PetscCall(DMPlexSetTree(dmNew,pSecShifted,parentsShifted,childIDsShifted)); 7979566063dSJacob Faibussowitsch PetscCall(PetscFree2(parentsShifted,childIDsShifted)); 7989566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&pSecShifted)); 799ca04dac2SToby Isaac } 800ca04dac2SToby Isaac PetscFunctionReturn(0); 801ca04dac2SToby Isaac } 802ca04dac2SToby Isaac 803cd0c2139SMatthew G Knepley static PetscErrorCode DMPlexConstructGhostCells_Internal(DM dm, DMLabel label, PetscInt *numGhostCells, DM gdm) 804cd0c2139SMatthew G Knepley { 805da97024aSMatthew G. Knepley PetscSF sf; 806cd0c2139SMatthew G Knepley IS valueIS; 807da97024aSMatthew G. Knepley const PetscInt *values, *leaves; 808cd0c2139SMatthew G Knepley PetscInt *depthShift; 8092582d50cSToby Isaac PetscInt d, depth = 0, nleaves, loc, Ng, numFS, fs, fStart, fEnd, ghostCell, cEnd, c; 81090b157c4SStefano Zampini PetscBool isper; 81190b157c4SStefano Zampini const PetscReal *maxCell, *L; 81290b157c4SStefano Zampini const DMBoundaryType *bd; 813cd0c2139SMatthew G Knepley 814cd0c2139SMatthew G Knepley PetscFunctionBegin; 8159566063dSJacob Faibussowitsch PetscCall(DMGetPointSF(dm, &sf)); 8169566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(sf, NULL, &nleaves, &leaves, NULL)); 817da97024aSMatthew G. Knepley nleaves = PetscMax(0, nleaves); 8189566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(dm, 1, &fStart, &fEnd)); 819cd0c2139SMatthew G Knepley /* Count ghost cells */ 8209566063dSJacob Faibussowitsch PetscCall(DMLabelGetValueIS(label, &valueIS)); 8219566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(valueIS, &numFS)); 8229566063dSJacob Faibussowitsch PetscCall(ISGetIndices(valueIS, &values)); 8234a6cfa73SMatthew G. Knepley Ng = 0; 824cd0c2139SMatthew G Knepley for (fs = 0; fs < numFS; ++fs) { 82546c796b9SMatthew G. Knepley IS faceIS; 82646c796b9SMatthew G. Knepley const PetscInt *faces; 82746c796b9SMatthew G. Knepley PetscInt numFaces, f, numBdFaces = 0; 828cd0c2139SMatthew G Knepley 8299566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(label, values[fs], &faceIS)); 8309566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(faceIS, &numFaces)); 8319566063dSJacob Faibussowitsch PetscCall(ISGetIndices(faceIS, &faces)); 83246c796b9SMatthew G. Knepley for (f = 0; f < numFaces; ++f) { 833ca04dac2SToby Isaac PetscInt numChildren; 834ca04dac2SToby Isaac 8359566063dSJacob Faibussowitsch PetscCall(PetscFindInt(faces[f], nleaves, leaves, &loc)); 8369566063dSJacob Faibussowitsch PetscCall(DMPlexGetTreeChildren(dm,faces[f],&numChildren,NULL)); 837ca04dac2SToby Isaac /* non-local and ancestors points don't get to register ghosts */ 838ca04dac2SToby Isaac if (loc >= 0 || numChildren) continue; 83946c796b9SMatthew G. Knepley if ((faces[f] >= fStart) && (faces[f] < fEnd)) ++numBdFaces; 84046c796b9SMatthew G. Knepley } 8414a6cfa73SMatthew G. Knepley Ng += numBdFaces; 8429566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(faceIS, &faces)); 8439566063dSJacob Faibussowitsch PetscCall(ISDestroy(&faceIS)); 844cd0c2139SMatthew G Knepley } 8459566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepth(dm, &depth)); 8469566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(2*(depth+1), &depthShift)); 8472582d50cSToby Isaac for (d = 0; d <= depth; d++) { 84859eef20bSToby Isaac PetscInt dEnd; 8492582d50cSToby Isaac 8509566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthStratum(dm,d,NULL,&dEnd)); 85159eef20bSToby Isaac depthShift[2*d] = dEnd; 8522582d50cSToby Isaac depthShift[2*d+1] = 0; 8532582d50cSToby Isaac } 8542582d50cSToby Isaac if (depth >= 0) depthShift[2*depth+1] = Ng; 8559566063dSJacob Faibussowitsch PetscCall(DMPlexShiftPointSetUp_Internal(depth,depthShift)); 8569566063dSJacob Faibussowitsch PetscCall(DMPlexShiftSizes_Internal(dm, depthShift, gdm)); 857cd0c2139SMatthew G Knepley /* Step 3: Set cone/support sizes for new points */ 8589566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(dm, 0, NULL, &cEnd)); 8594a6cfa73SMatthew G. Knepley for (c = cEnd; c < cEnd + Ng; ++c) { 8609566063dSJacob Faibussowitsch PetscCall(DMPlexSetConeSize(gdm, c, 1)); 861cd0c2139SMatthew G Knepley } 862cd0c2139SMatthew G Knepley for (fs = 0; fs < numFS; ++fs) { 863cd0c2139SMatthew G Knepley IS faceIS; 864cd0c2139SMatthew G Knepley const PetscInt *faces; 865cd0c2139SMatthew G Knepley PetscInt numFaces, f; 866cd0c2139SMatthew G Knepley 8679566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(label, values[fs], &faceIS)); 8689566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(faceIS, &numFaces)); 8699566063dSJacob Faibussowitsch PetscCall(ISGetIndices(faceIS, &faces)); 870cd0c2139SMatthew G Knepley for (f = 0; f < numFaces; ++f) { 871ca04dac2SToby Isaac PetscInt size, numChildren; 872cd0c2139SMatthew G Knepley 8739566063dSJacob Faibussowitsch PetscCall(PetscFindInt(faces[f], nleaves, leaves, &loc)); 8749566063dSJacob Faibussowitsch PetscCall(DMPlexGetTreeChildren(dm,faces[f],&numChildren,NULL)); 875ca04dac2SToby Isaac if (loc >= 0 || numChildren) continue; 87646c796b9SMatthew G. Knepley if ((faces[f] < fStart) || (faces[f] >= fEnd)) continue; 8779566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dm, faces[f], &size)); 87808401ef6SPierre Jolivet PetscCheck(size == 1,PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "DM has boundary face %d with %d support cells", faces[f], size); 8799566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupportSize(gdm, faces[f] + Ng, 2)); 880cd0c2139SMatthew G Knepley } 8819566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(faceIS, &faces)); 8829566063dSJacob Faibussowitsch PetscCall(ISDestroy(&faceIS)); 883cd0c2139SMatthew G Knepley } 884cd0c2139SMatthew G Knepley /* Step 4: Setup ghosted DM */ 8859566063dSJacob Faibussowitsch PetscCall(DMSetUp(gdm)); 8869566063dSJacob Faibussowitsch PetscCall(DMPlexShiftPoints_Internal(dm, depthShift, gdm)); 887cd0c2139SMatthew G Knepley /* Step 6: Set cones and supports for new points */ 888cd0c2139SMatthew G Knepley ghostCell = cEnd; 889cd0c2139SMatthew G Knepley for (fs = 0; fs < numFS; ++fs) { 890cd0c2139SMatthew G Knepley IS faceIS; 891cd0c2139SMatthew G Knepley const PetscInt *faces; 892cd0c2139SMatthew G Knepley PetscInt numFaces, f; 893cd0c2139SMatthew G Knepley 8949566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(label, values[fs], &faceIS)); 8959566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(faceIS, &numFaces)); 8969566063dSJacob Faibussowitsch PetscCall(ISGetIndices(faceIS, &faces)); 89746c796b9SMatthew G. Knepley for (f = 0; f < numFaces; ++f) { 898ca04dac2SToby Isaac PetscInt newFace = faces[f] + Ng, numChildren; 899cd0c2139SMatthew G Knepley 9009566063dSJacob Faibussowitsch PetscCall(PetscFindInt(faces[f], nleaves, leaves, &loc)); 9019566063dSJacob Faibussowitsch PetscCall(DMPlexGetTreeChildren(dm,faces[f],&numChildren,NULL)); 902ca04dac2SToby Isaac if (loc >= 0 || numChildren) continue; 90346c796b9SMatthew G. Knepley if ((faces[f] < fStart) || (faces[f] >= fEnd)) continue; 9049566063dSJacob Faibussowitsch PetscCall(DMPlexSetCone(gdm, ghostCell, &newFace)); 9059566063dSJacob Faibussowitsch PetscCall(DMPlexInsertSupport(gdm, newFace, 1, ghostCell)); 90646c796b9SMatthew G. Knepley ++ghostCell; 907cd0c2139SMatthew G Knepley } 9089566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(faceIS, &faces)); 9099566063dSJacob Faibussowitsch PetscCall(ISDestroy(&faceIS)); 910cd0c2139SMatthew G Knepley } 9119566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(valueIS, &values)); 9129566063dSJacob Faibussowitsch PetscCall(ISDestroy(&valueIS)); 9139566063dSJacob Faibussowitsch PetscCall(DMPlexShiftCoordinates_Internal(dm, depthShift, gdm)); 9149566063dSJacob Faibussowitsch PetscCall(DMPlexShiftSF_Internal(dm, depthShift, gdm)); 9159566063dSJacob Faibussowitsch PetscCall(DMPlexShiftLabels_Internal(dm, depthShift, gdm)); 9169566063dSJacob Faibussowitsch PetscCall(DMPlexCreateVTKLabel_Internal(dm, PETSC_TRUE, gdm)); 9179566063dSJacob Faibussowitsch PetscCall(DMPlexShiftTree_Internal(dm, depthShift, gdm)); 9189566063dSJacob Faibussowitsch PetscCall(PetscFree(depthShift)); 919412e9a14SMatthew G. Knepley for (c = cEnd; c < cEnd + Ng; ++c) { 9209566063dSJacob Faibussowitsch PetscCall(DMPlexSetCellType(gdm, c, DM_POLYTOPE_FV_GHOST)); 921412e9a14SMatthew G. Knepley } 922966c7b3fSMatthew G. Knepley /* Step 7: Periodicity */ 9239566063dSJacob Faibussowitsch PetscCall(DMGetPeriodicity(dm, &isper, &maxCell, &L, &bd)); 9249566063dSJacob Faibussowitsch PetscCall(DMSetPeriodicity(gdm, isper, maxCell, L, bd)); 9254a6cfa73SMatthew G. Knepley if (numGhostCells) *numGhostCells = Ng; 926cd0c2139SMatthew G Knepley PetscFunctionReturn(0); 927cd0c2139SMatthew G Knepley } 928cd0c2139SMatthew G Knepley 929cd0c2139SMatthew G Knepley /*@C 930cd0c2139SMatthew G Knepley DMPlexConstructGhostCells - Construct ghost cells which connect to every boundary face 931cd0c2139SMatthew G Knepley 932cd0c2139SMatthew G Knepley Collective on dm 933cd0c2139SMatthew G Knepley 934cd0c2139SMatthew G Knepley Input Parameters: 935cd0c2139SMatthew G Knepley + dm - The original DM 936cd0c2139SMatthew G Knepley - labelName - The label specifying the boundary faces, or "Face Sets" if this is NULL 937cd0c2139SMatthew G Knepley 938cd0c2139SMatthew G Knepley Output Parameters: 939cd0c2139SMatthew G Knepley + numGhostCells - The number of ghost cells added to the DM 940cd0c2139SMatthew G Knepley - dmGhosted - The new DM 941cd0c2139SMatthew G Knepley 942cd0c2139SMatthew G Knepley Note: If no label exists of that name, one will be created marking all boundary faces 943cd0c2139SMatthew G Knepley 944cd0c2139SMatthew G Knepley Level: developer 945cd0c2139SMatthew G Knepley 946cd0c2139SMatthew G Knepley .seealso: DMCreate() 94731266bc0SMatthew G. Knepley @*/ 948cd0c2139SMatthew G Knepley PetscErrorCode DMPlexConstructGhostCells(DM dm, const char labelName[], PetscInt *numGhostCells, DM *dmGhosted) 949cd0c2139SMatthew G Knepley { 950cd0c2139SMatthew G Knepley DM gdm; 951cd0c2139SMatthew G Knepley DMLabel label; 952cd0c2139SMatthew G Knepley const char *name = labelName ? labelName : "Face Sets"; 953412e9a14SMatthew G. Knepley PetscInt dim, Ng = 0; 954b0441da4SMatthew G. Knepley PetscBool useCone, useClosure; 955cd0c2139SMatthew G Knepley 956cd0c2139SMatthew G Knepley PetscFunctionBegin; 957cd0c2139SMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 958dadcf809SJacob Faibussowitsch if (numGhostCells) PetscValidIntPointer(numGhostCells, 3); 959cd0c2139SMatthew G Knepley PetscValidPointer(dmGhosted, 4); 9609566063dSJacob Faibussowitsch PetscCall(DMCreate(PetscObjectComm((PetscObject)dm), &gdm)); 9619566063dSJacob Faibussowitsch PetscCall(DMSetType(gdm, DMPLEX)); 9629566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 9639566063dSJacob Faibussowitsch PetscCall(DMSetDimension(gdm, dim)); 9649566063dSJacob Faibussowitsch PetscCall(DMGetBasicAdjacency(dm, &useCone, &useClosure)); 9659566063dSJacob Faibussowitsch PetscCall(DMSetBasicAdjacency(gdm, useCone, useClosure)); 9669566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, name, &label)); 967cd0c2139SMatthew G Knepley if (!label) { 968cd0c2139SMatthew G Knepley /* Get label for boundary faces */ 9699566063dSJacob Faibussowitsch PetscCall(DMCreateLabel(dm, name)); 9709566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, name, &label)); 9719566063dSJacob Faibussowitsch PetscCall(DMPlexMarkBoundaryFaces(dm, 1, label)); 972cd0c2139SMatthew G Knepley } 9739566063dSJacob Faibussowitsch PetscCall(DMPlexConstructGhostCells_Internal(dm, label, &Ng, gdm)); 9749566063dSJacob Faibussowitsch PetscCall(DMCopyDisc(dm, gdm)); 9759566063dSJacob Faibussowitsch PetscCall(DMPlexCopy_Internal(dm, PETSC_TRUE, gdm)); 976cad26855SMatthew G. Knepley gdm->setfromoptionscalled = dm->setfromoptionscalled; 977d80ece95SMatthew G. Knepley if (numGhostCells) *numGhostCells = Ng; 978cd0c2139SMatthew G Knepley *dmGhosted = gdm; 979cd0c2139SMatthew G Knepley PetscFunctionReturn(0); 980cd0c2139SMatthew G Knepley } 981cd0c2139SMatthew G Knepley 982607ab7a9SMatthew G. Knepley /* 983faedd622SMatthew G. Knepley We are adding three kinds of points here: 984607ab7a9SMatthew G. Knepley Replicated: Copies of points which exist in the mesh, such as vertices identified across a fault 985faedd622SMatthew G. Knepley Non-replicated: Points which exist on the fault, but are not replicated 986*b6dfa339SMatthew G. Knepley Ghost: These are shared fault faces which are not owned by this process. These do not produce hybrid cells and do not replicate 987607ab7a9SMatthew G. Knepley Hybrid: Entirely new points, such as cohesive cells 988a6ae58d1SMatthew G. Knepley 989a6ae58d1SMatthew G. Knepley When creating subsequent cohesive cells, we shift the old hybrid cells to the end of the numbering at 990a6ae58d1SMatthew G. Knepley each depth so that the new split/hybrid points can be inserted as a block. 991607ab7a9SMatthew G. Knepley */ 9927db7e0a7SMatthew G. Knepley static PetscErrorCode DMPlexConstructCohesiveCells_Internal(DM dm, DMLabel label, DMLabel splitLabel, DM sdm) 993cd0c2139SMatthew G Knepley { 994cd0c2139SMatthew G Knepley MPI_Comm comm; 995607ab7a9SMatthew G. Knepley IS valueIS; 996607ab7a9SMatthew G. Knepley PetscInt numSP = 0; /* The number of depths for which we have replicated points */ 997607ab7a9SMatthew G. Knepley const PetscInt *values; /* List of depths for which we have replicated points */ 99818c5995bSMatthew G. Knepley IS *splitIS; 99918c5995bSMatthew G. Knepley IS *unsplitIS; 1000*b6dfa339SMatthew G. Knepley IS ghostIS; 1001607ab7a9SMatthew G. Knepley PetscInt *numSplitPoints; /* The number of replicated points at each depth */ 100218c5995bSMatthew G. Knepley PetscInt *numUnsplitPoints; /* The number of non-replicated points at each depth which still give rise to hybrid points */ 100336dbac82SMatthew G. Knepley PetscInt *numHybridPoints; /* The number of new hybrid points at each depth */ 100436dbac82SMatthew G. Knepley PetscInt *numHybridPointsOld; /* The number of existing hybrid points at each depth */ 1005*b6dfa339SMatthew G. Knepley PetscInt numGhostPoints; /* The number of unowned, shared fault faces */ 1006607ab7a9SMatthew G. Knepley const PetscInt **splitPoints; /* Replicated points for each depth */ 100718c5995bSMatthew G. Knepley const PetscInt **unsplitPoints; /* Non-replicated points for each depth */ 1008*b6dfa339SMatthew G. Knepley const PetscInt *ghostPoints; /* Ghost fault faces */ 1009cd0c2139SMatthew G Knepley PetscSection coordSection; 1010cd0c2139SMatthew G Knepley Vec coordinates; 1011cd0c2139SMatthew G Knepley PetscScalar *coords; 1012a6ae58d1SMatthew G. Knepley PetscInt *depthMax; /* The first hybrid point at each depth in the original mesh */ 1013a6ae58d1SMatthew G. Knepley PetscInt *depthEnd; /* The point limit at each depth in the original mesh */ 1014607ab7a9SMatthew G. Knepley PetscInt *depthShift; /* Number of replicated+hybrid points at each depth */ 1015607ab7a9SMatthew G. Knepley PetscInt *pMaxNew; /* The first replicated point at each depth in the new mesh, hybrids come after this */ 1016607ab7a9SMatthew G. Knepley PetscInt *coneNew, *coneONew, *supportNew; 101718c5995bSMatthew G. Knepley PetscInt shift = 100, shift2 = 200, depth = 0, dep, dim, d, sp, maxConeSize, maxSupportSize, maxConeSizeNew, maxSupportSizeNew, numLabels, vStart, vEnd, pEnd, p, v; 1018cd0c2139SMatthew G Knepley 1019cd0c2139SMatthew G Knepley PetscFunctionBegin; 10209566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)dm,&comm)); 10219566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 10229566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepth(dm, &depth)); 10239566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthStratum(dm, 0, &vStart, &vEnd)); 1024412e9a14SMatthew G. Knepley /* We do not want this label automatically computed, instead we compute it here */ 10259566063dSJacob Faibussowitsch PetscCall(DMCreateLabel(sdm, "celltype")); 1026cd0c2139SMatthew G Knepley /* Count split points and add cohesive cells */ 10279566063dSJacob Faibussowitsch PetscCall(DMPlexGetMaxSizes(dm, &maxConeSize, &maxSupportSize)); 10289566063dSJacob Faibussowitsch PetscCall(PetscMalloc5(depth+1,&depthMax,depth+1,&depthEnd,2*(depth+1),&depthShift,depth+1,&pMaxNew,depth+1,&numHybridPointsOld)); 10299566063dSJacob Faibussowitsch PetscCall(PetscMalloc7(depth+1,&splitIS,depth+1,&unsplitIS,depth+1,&numSplitPoints,depth+1,&numUnsplitPoints,depth+1,&numHybridPoints,depth+1,&splitPoints,depth+1,&unsplitPoints)); 1030607ab7a9SMatthew G. Knepley for (d = 0; d <= depth; ++d) { 10319566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthStratum(dm, d, NULL, &pMaxNew[d])); 10329566063dSJacob Faibussowitsch PetscCall(DMPlexGetTensorPrismBounds_Internal(dm, d, &depthMax[d], NULL)); 1033a6ae58d1SMatthew G. Knepley depthEnd[d] = pMaxNew[d]; 1034a6ae58d1SMatthew G. Knepley depthMax[d] = depthMax[d] < 0 ? depthEnd[d] : depthMax[d]; 1035607ab7a9SMatthew G. Knepley numSplitPoints[d] = 0; 103618c5995bSMatthew G. Knepley numUnsplitPoints[d] = 0; 1037607ab7a9SMatthew G. Knepley numHybridPoints[d] = 0; 1038a6ae58d1SMatthew G. Knepley numHybridPointsOld[d] = depthMax[d] < 0 ? 0 : depthEnd[d] - depthMax[d]; 1039607ab7a9SMatthew G. Knepley splitPoints[d] = NULL; 104018c5995bSMatthew G. Knepley unsplitPoints[d] = NULL; 104118c5995bSMatthew G. Knepley splitIS[d] = NULL; 104218c5995bSMatthew G. Knepley unsplitIS[d] = NULL; 104359eef20bSToby Isaac /* we are shifting the existing hybrid points with the stratum behind them, so 104459eef20bSToby Isaac * the split comes at the end of the normal points, i.e., at depthMax[d] */ 104559eef20bSToby Isaac depthShift[2*d] = depthMax[d]; 104659eef20bSToby Isaac depthShift[2*d+1] = 0; 1047607ab7a9SMatthew G. Knepley } 1048*b6dfa339SMatthew G. Knepley numGhostPoints = 0; 1049*b6dfa339SMatthew G. Knepley ghostPoints = NULL; 1050cd0c2139SMatthew G Knepley if (label) { 10519566063dSJacob Faibussowitsch PetscCall(DMLabelGetValueIS(label, &valueIS)); 10529566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(valueIS, &numSP)); 10539566063dSJacob Faibussowitsch PetscCall(ISGetIndices(valueIS, &values)); 1054cd0c2139SMatthew G Knepley } 1055cd0c2139SMatthew G Knepley for (sp = 0; sp < numSP; ++sp) { 1056cd0c2139SMatthew G Knepley const PetscInt dep = values[sp]; 1057cd0c2139SMatthew G Knepley 1058cd0c2139SMatthew G Knepley if ((dep < 0) || (dep > depth)) continue; 10599566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(label, dep, &splitIS[dep])); 106018c5995bSMatthew G. Knepley if (splitIS[dep]) { 10619566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(splitIS[dep], &numSplitPoints[dep])); 10629566063dSJacob Faibussowitsch PetscCall(ISGetIndices(splitIS[dep], &splitPoints[dep])); 106318c5995bSMatthew G. Knepley } 10649566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(label, shift2+dep, &unsplitIS[dep])); 106518c5995bSMatthew G. Knepley if (unsplitIS[dep]) { 10669566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(unsplitIS[dep], &numUnsplitPoints[dep])); 10679566063dSJacob Faibussowitsch PetscCall(ISGetIndices(unsplitIS[dep], &unsplitPoints[dep])); 1068cd0c2139SMatthew G Knepley } 1069cd0c2139SMatthew G Knepley } 1070*b6dfa339SMatthew G. Knepley PetscCall(DMLabelGetStratumIS(label, shift2+dim-1, &ghostIS)); 1071*b6dfa339SMatthew G. Knepley if (ghostIS) { 1072*b6dfa339SMatthew G. Knepley PetscCall(ISGetLocalSize(ghostIS, &numGhostPoints)); 1073*b6dfa339SMatthew G. Knepley PetscCall(ISGetIndices(ghostIS, &ghostPoints)); 1074*b6dfa339SMatthew G. Knepley } 1075607ab7a9SMatthew G. Knepley /* Calculate number of hybrid points */ 107618c5995bSMatthew G. Knepley for (d = 1; d <= depth; ++d) numHybridPoints[d] = numSplitPoints[d-1] + numUnsplitPoints[d-1]; /* There is a hybrid cell/face/edge for every split face/edge/vertex */ 10772582d50cSToby Isaac for (d = 0; d <= depth; ++d) depthShift[2*d+1] = numSplitPoints[d] + numHybridPoints[d]; 10789566063dSJacob Faibussowitsch PetscCall(DMPlexShiftPointSetUp_Internal(depth,depthShift)); 107959eef20bSToby Isaac /* the end of the points in this stratum that come before the new points: 108059eef20bSToby Isaac * shifting pMaxNew[d] gets the new start of the next stratum, then count back the old hybrid points and the newly 108159eef20bSToby Isaac * added points */ 10822582d50cSToby Isaac for (d = 0; d <= depth; ++d) pMaxNew[d] = DMPlexShiftPoint_Internal(pMaxNew[d],depth,depthShift) - (numHybridPointsOld[d] + numSplitPoints[d] + numHybridPoints[d]); 10839566063dSJacob Faibussowitsch PetscCall(DMPlexShiftSizes_Internal(dm, depthShift, sdm)); 1084cd0c2139SMatthew G Knepley /* Step 3: Set cone/support sizes for new points */ 1085cd0c2139SMatthew G Knepley for (dep = 0; dep <= depth; ++dep) { 1086cd0c2139SMatthew G Knepley for (p = 0; p < numSplitPoints[dep]; ++p) { 1087cd0c2139SMatthew G Knepley const PetscInt oldp = splitPoints[dep][p]; 10882582d50cSToby Isaac const PetscInt newp = DMPlexShiftPoint_Internal(oldp, depth, depthShift) /*oldp + depthOffset[dep]*/; 10894c367dbcSMatthew G. Knepley const PetscInt splitp = p + pMaxNew[dep]; 1090cd0c2139SMatthew G Knepley const PetscInt *support; 1091394c2f0fSMatthew G. Knepley DMPolytopeType ct; 10924c367dbcSMatthew G. Knepley PetscInt coneSize, supportSize, qf, qn, qp, e; 1093cd0c2139SMatthew G Knepley 10949566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, oldp, &coneSize)); 10959566063dSJacob Faibussowitsch PetscCall(DMPlexSetConeSize(sdm, splitp, coneSize)); 10969566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dm, oldp, &supportSize)); 10979566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupportSize(sdm, splitp, supportSize)); 10989566063dSJacob Faibussowitsch PetscCall(DMPlexGetCellType(dm, oldp, &ct)); 10999566063dSJacob Faibussowitsch PetscCall(DMPlexSetCellType(sdm, splitp, ct)); 1100cd0c2139SMatthew G Knepley if (dep == depth-1) { 11014c367dbcSMatthew G. Knepley const PetscInt hybcell = p + pMaxNew[dep+1] + numSplitPoints[dep+1]; 11024c367dbcSMatthew G. Knepley 1103cd0c2139SMatthew G Knepley /* Add cohesive cells, they are prisms */ 11049566063dSJacob Faibussowitsch PetscCall(DMPlexSetConeSize(sdm, hybcell, 2 + coneSize)); 1105412e9a14SMatthew G. Knepley switch (coneSize) { 11069566063dSJacob Faibussowitsch case 2: PetscCall(DMPlexSetCellType(sdm, hybcell, DM_POLYTOPE_SEG_PRISM_TENSOR));break; 11079566063dSJacob Faibussowitsch case 3: PetscCall(DMPlexSetCellType(sdm, hybcell, DM_POLYTOPE_TRI_PRISM_TENSOR));break; 11089566063dSJacob Faibussowitsch case 4: PetscCall(DMPlexSetCellType(sdm, hybcell, DM_POLYTOPE_QUAD_PRISM_TENSOR));break; 1109412e9a14SMatthew G. Knepley } 1110*b6dfa339SMatthew G. Knepley /* Shared fault faces with only one support cell now have two with the cohesive cell */ 1111*b6dfa339SMatthew G. Knepley /* TODO Check thaat oldp has rootdegree == 1 */ 1112*b6dfa339SMatthew G. Knepley if (supportSize == 1) { 1113*b6dfa339SMatthew G. Knepley const PetscInt *support; 1114*b6dfa339SMatthew G. Knepley PetscInt val; 1115*b6dfa339SMatthew G. Knepley 1116*b6dfa339SMatthew G. Knepley PetscCall(DMPlexGetSupport(dm, oldp, &support)); 1117*b6dfa339SMatthew G. Knepley PetscCall(DMLabelGetValue(label, support[0], &val)); 1118*b6dfa339SMatthew G. Knepley if (val < 0) PetscCall(DMPlexSetSupportSize(sdm, splitp, 2)); 1119*b6dfa339SMatthew G. Knepley else PetscCall(DMPlexSetSupportSize(sdm, newp, 2)); 1120*b6dfa339SMatthew G. Knepley } 1121cd0c2139SMatthew G Knepley } else if (dep == 0) { 11224c367dbcSMatthew G. Knepley const PetscInt hybedge = p + pMaxNew[dep+1] + numSplitPoints[dep+1]; 1123cd0c2139SMatthew G Knepley 11249566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(dm, oldp, &support)); 11254c367dbcSMatthew G. Knepley for (e = 0, qn = 0, qp = 0, qf = 0; e < supportSize; ++e) { 1126cd0c2139SMatthew G Knepley PetscInt val; 1127cd0c2139SMatthew G Knepley 11289566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, support[e], &val)); 11294c367dbcSMatthew G. Knepley if (val == 1) ++qf; 11304c367dbcSMatthew G. Knepley if ((val == 1) || (val == (shift + 1))) ++qn; 11314c367dbcSMatthew G. Knepley if ((val == 1) || (val == -(shift + 1))) ++qp; 1132cd0c2139SMatthew G Knepley } 11334c367dbcSMatthew G. Knepley /* Split old vertex: Edges into original vertex and new cohesive edge */ 11349566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupportSize(sdm, newp, qn+1)); 11354c367dbcSMatthew G. Knepley /* Split new vertex: Edges into split vertex and new cohesive edge */ 11369566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupportSize(sdm, splitp, qp+1)); 11374c367dbcSMatthew G. Knepley /* Add hybrid edge */ 11389566063dSJacob Faibussowitsch PetscCall(DMPlexSetConeSize(sdm, hybedge, 2)); 11399566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupportSize(sdm, hybedge, qf)); 11409566063dSJacob Faibussowitsch PetscCall(DMPlexSetCellType(sdm, hybedge, DM_POLYTOPE_POINT_PRISM_TENSOR)); 1141cd0c2139SMatthew G Knepley } else if (dep == dim-2) { 11424c367dbcSMatthew G. Knepley const PetscInt hybface = p + pMaxNew[dep+1] + numSplitPoints[dep+1]; 11434c367dbcSMatthew G. Knepley 11449566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(dm, oldp, &support)); 11454c367dbcSMatthew G. Knepley for (e = 0, qn = 0, qp = 0, qf = 0; e < supportSize; ++e) { 1146cd0c2139SMatthew G Knepley PetscInt val; 1147cd0c2139SMatthew G Knepley 11489566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, support[e], &val)); 11494c367dbcSMatthew G. Knepley if (val == dim-1) ++qf; 11504c367dbcSMatthew G. Knepley if ((val == dim-1) || (val == (shift + dim-1))) ++qn; 11514c367dbcSMatthew G. Knepley if ((val == dim-1) || (val == -(shift + dim-1))) ++qp; 1152cd0c2139SMatthew G Knepley } 11534c367dbcSMatthew G. Knepley /* Split old edge: Faces into original edge and cohesive face (positive side?) */ 11549566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupportSize(sdm, newp, qn+1)); 11554c367dbcSMatthew G. Knepley /* Split new edge: Faces into split edge and cohesive face (negative side?) */ 11569566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupportSize(sdm, splitp, qp+1)); 11574c367dbcSMatthew G. Knepley /* Add hybrid face */ 11589566063dSJacob Faibussowitsch PetscCall(DMPlexSetConeSize(sdm, hybface, 4)); 11599566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupportSize(sdm, hybface, qf)); 11609566063dSJacob Faibussowitsch PetscCall(DMPlexSetCellType(sdm, hybface, DM_POLYTOPE_SEG_PRISM_TENSOR)); 1161cd0c2139SMatthew G Knepley } 1162cd0c2139SMatthew G Knepley } 1163cd0c2139SMatthew G Knepley } 116418c5995bSMatthew G. Knepley for (dep = 0; dep <= depth; ++dep) { 116518c5995bSMatthew G. Knepley for (p = 0; p < numUnsplitPoints[dep]; ++p) { 116618c5995bSMatthew G. Knepley const PetscInt oldp = unsplitPoints[dep][p]; 11672582d50cSToby Isaac const PetscInt newp = DMPlexShiftPoint_Internal(oldp, depth, depthShift) /*oldp + depthOffset[dep]*/; 116818c5995bSMatthew G. Knepley const PetscInt *support; 1169da1dd7e4SMatthew G. Knepley PetscInt coneSize, supportSize, qf, e, s; 117018c5995bSMatthew G. Knepley 11719566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, oldp, &coneSize)); 11729566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dm, oldp, &supportSize)); 11739566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(dm, oldp, &support)); 117418c5995bSMatthew G. Knepley if (dep == 0) { 117518c5995bSMatthew G. Knepley const PetscInt hybedge = p + pMaxNew[dep+1] + numSplitPoints[dep+1] + numSplitPoints[dep]; 117618c5995bSMatthew G. Knepley 117739254ff6SMatthew G. Knepley /* Unsplit vertex: Edges into original vertex, split edges, and new cohesive edge twice */ 117839254ff6SMatthew G. Knepley for (s = 0, qf = 0; s < supportSize; ++s, ++qf) { 11799566063dSJacob Faibussowitsch PetscCall(PetscFindInt(support[s], numSplitPoints[dep+1], splitPoints[dep+1], &e)); 118039254ff6SMatthew G. Knepley if (e >= 0) ++qf; 118139254ff6SMatthew G. Knepley } 11829566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupportSize(sdm, newp, qf+2)); 118318c5995bSMatthew G. Knepley /* Add hybrid edge */ 11849566063dSJacob Faibussowitsch PetscCall(DMPlexSetConeSize(sdm, hybedge, 2)); 1185e1757548SMatthew G. Knepley for (e = 0, qf = 0; e < supportSize; ++e) { 1186e1757548SMatthew G. Knepley PetscInt val; 1187e1757548SMatthew G. Knepley 11889566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, support[e], &val)); 1189e1757548SMatthew G. Knepley /* Split and unsplit edges produce hybrid faces */ 1190da1dd7e4SMatthew G. Knepley if (val == 1) ++qf; 1191da1dd7e4SMatthew G. Knepley if (val == (shift2 + 1)) ++qf; 1192e1757548SMatthew G. Knepley } 11939566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupportSize(sdm, hybedge, qf)); 11949566063dSJacob Faibussowitsch PetscCall(DMPlexSetCellType(sdm, hybedge, DM_POLYTOPE_POINT_PRISM_TENSOR)); 119518c5995bSMatthew G. Knepley } else if (dep == dim-2) { 119618c5995bSMatthew G. Knepley const PetscInt hybface = p + pMaxNew[dep+1] + numSplitPoints[dep+1] + numSplitPoints[dep]; 1197cd0c2139SMatthew G Knepley PetscInt val; 1198cd0c2139SMatthew G Knepley 1199da1dd7e4SMatthew G. Knepley for (e = 0, qf = 0; e < supportSize; ++e) { 12009566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, support[e], &val)); 1201da1dd7e4SMatthew G. Knepley if (val == dim-1) qf += 2; 1202da1dd7e4SMatthew G. Knepley else ++qf; 1203cd0c2139SMatthew G Knepley } 120418c5995bSMatthew G. Knepley /* Unsplit edge: Faces into original edge, split face, and cohesive face twice */ 12059566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupportSize(sdm, newp, qf+2)); 120618c5995bSMatthew G. Knepley /* Add hybrid face */ 1207da1dd7e4SMatthew G. Knepley for (e = 0, qf = 0; e < supportSize; ++e) { 12089566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, support[e], &val)); 1209da1dd7e4SMatthew G. Knepley if (val == dim-1) ++qf; 1210da1dd7e4SMatthew G. Knepley } 12119566063dSJacob Faibussowitsch PetscCall(DMPlexSetConeSize(sdm, hybface, 4)); 12129566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupportSize(sdm, hybface, qf)); 12139566063dSJacob Faibussowitsch PetscCall(DMPlexSetCellType(sdm, hybface, DM_POLYTOPE_SEG_PRISM_TENSOR)); 1214cd0c2139SMatthew G Knepley } 1215cd0c2139SMatthew G Knepley } 1216cd0c2139SMatthew G Knepley } 1217cd0c2139SMatthew G Knepley /* Step 4: Setup split DM */ 12189566063dSJacob Faibussowitsch PetscCall(DMSetUp(sdm)); 12199566063dSJacob Faibussowitsch PetscCall(DMPlexShiftPoints_Internal(dm, depthShift, sdm)); 12209566063dSJacob Faibussowitsch PetscCall(DMPlexGetMaxSizes(sdm, &maxConeSizeNew, &maxSupportSizeNew)); 12219566063dSJacob Faibussowitsch PetscCall(PetscMalloc3(PetscMax(maxConeSize, maxConeSizeNew)*3,&coneNew,PetscMax(maxConeSize, maxConeSizeNew)*3,&coneONew,PetscMax(maxSupportSize, maxSupportSizeNew),&supportNew)); 1222cd0c2139SMatthew G Knepley /* Step 6: Set cones and supports for new points */ 1223cd0c2139SMatthew G Knepley for (dep = 0; dep <= depth; ++dep) { 1224cd0c2139SMatthew G Knepley for (p = 0; p < numSplitPoints[dep]; ++p) { 1225cd0c2139SMatthew G Knepley const PetscInt oldp = splitPoints[dep][p]; 12262582d50cSToby Isaac const PetscInt newp = DMPlexShiftPoint_Internal(oldp, depth, depthShift) /*oldp + depthOffset[dep]*/; 12274c367dbcSMatthew G. Knepley const PetscInt splitp = p + pMaxNew[dep]; 1228cd0c2139SMatthew G Knepley const PetscInt *cone, *support, *ornt; 1229b5a892a1SMatthew G. Knepley DMPolytopeType ct; 12304c367dbcSMatthew G. Knepley PetscInt coneSize, supportSize, q, qf, qn, qp, v, e, s; 1231cd0c2139SMatthew G Knepley 12329566063dSJacob Faibussowitsch PetscCall(DMPlexGetCellType(dm, oldp, &ct)); 12339566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, oldp, &coneSize)); 12349566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, oldp, &cone)); 12359566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeOrientation(dm, oldp, &ornt)); 12369566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dm, oldp, &supportSize)); 12379566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(dm, oldp, &support)); 1238cd0c2139SMatthew G Knepley if (dep == depth-1) { 123996a07cd0SMatthew G. Knepley PetscBool hasUnsplit = PETSC_FALSE; 12404c367dbcSMatthew G. Knepley const PetscInt hybcell = p + pMaxNew[dep+1] + numSplitPoints[dep+1]; 1241cd0c2139SMatthew G Knepley const PetscInt *supportF; 1242cd0c2139SMatthew G Knepley 1243*b6dfa339SMatthew G. Knepley coneONew[0] = coneONew[1] = -1000; 1244cd0c2139SMatthew G Knepley /* Split face: copy in old face to new face to start */ 12459566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(sdm, newp, &supportF)); 12469566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupport(sdm, splitp, supportF)); 1247cd0c2139SMatthew G Knepley /* Split old face: old vertices/edges in cone so no change */ 1248cd0c2139SMatthew G Knepley /* Split new face: new vertices/edges in cone */ 1249cd0c2139SMatthew G Knepley for (q = 0; q < coneSize; ++q) { 12509566063dSJacob Faibussowitsch PetscCall(PetscFindInt(cone[q], numSplitPoints[dep-1], splitPoints[dep-1], &v)); 125118c5995bSMatthew G. Knepley if (v < 0) { 12529566063dSJacob Faibussowitsch PetscCall(PetscFindInt(cone[q], numUnsplitPoints[dep-1], unsplitPoints[dep-1], &v)); 125308401ef6SPierre Jolivet PetscCheck(v >= 0,PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Could not locate point %d in split or unsplit points of depth %d", cone[q], dep-1); 12542582d50cSToby Isaac coneNew[2+q] = DMPlexShiftPoint_Internal(cone[q], depth, depthShift) /*cone[q] + depthOffset[dep-1]*/; 125596a07cd0SMatthew G. Knepley hasUnsplit = PETSC_TRUE; 125618c5995bSMatthew G. Knepley } else { 12574c367dbcSMatthew G. Knepley coneNew[2+q] = v + pMaxNew[dep-1]; 1258163235baSMatthew G. Knepley if (dep > 1) { 1259163235baSMatthew G. Knepley const PetscInt *econe; 1260163235baSMatthew G. Knepley PetscInt econeSize, r, vs, vu; 1261163235baSMatthew G. Knepley 12629566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, cone[q], &econeSize)); 12639566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, cone[q], &econe)); 1264163235baSMatthew G. Knepley for (r = 0; r < econeSize; ++r) { 12659566063dSJacob Faibussowitsch PetscCall(PetscFindInt(econe[r], numSplitPoints[dep-2], splitPoints[dep-2], &vs)); 12669566063dSJacob Faibussowitsch PetscCall(PetscFindInt(econe[r], numUnsplitPoints[dep-2], unsplitPoints[dep-2], &vu)); 1267163235baSMatthew G. Knepley if (vs >= 0) continue; 126808401ef6SPierre Jolivet PetscCheck(vu >= 0,PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Could not locate point %d in split or unsplit points of depth %d", econe[r], dep-2); 1269163235baSMatthew G. Knepley hasUnsplit = PETSC_TRUE; 1270163235baSMatthew G. Knepley } 1271163235baSMatthew G. Knepley } 1272cd0c2139SMatthew G Knepley } 1273cd0c2139SMatthew G Knepley } 12749566063dSJacob Faibussowitsch PetscCall(DMPlexSetCone(sdm, splitp, &coneNew[2])); 12759566063dSJacob Faibussowitsch PetscCall(DMPlexSetConeOrientation(sdm, splitp, ornt)); 1276e537020bSMatthew G. Knepley /* Face support */ 1277*b6dfa339SMatthew G. Knepley PetscInt vals[2]; 1278cd0c2139SMatthew G Knepley 1279*b6dfa339SMatthew G. Knepley PetscCall(DMLabelGetValue(label, support[0], &vals[0])); 1280*b6dfa339SMatthew G. Knepley if (supportSize > 1) PetscCall(DMLabelGetValue(label, support[1], &vals[1])); 1281*b6dfa339SMatthew G. Knepley else vals[1] = -vals[0]; 1282*b6dfa339SMatthew G. Knepley PetscCheck(vals[0]*vals[1] < 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid support labels %" PetscInt_FMT " %" PetscInt_FMT, vals[0], vals[1]); 1283*b6dfa339SMatthew G. Knepley 1284*b6dfa339SMatthew G. Knepley for (s = 0; s < 2; ++s) { 1285*b6dfa339SMatthew G. Knepley if (s >= supportSize) { 1286*b6dfa339SMatthew G. Knepley if (vals[s] < 0) { 1287*b6dfa339SMatthew G. Knepley /* Ghost old face: Replace negative side cell with cohesive cell */ 1288*b6dfa339SMatthew G. Knepley PetscCall(DMPlexInsertSupport(sdm, newp, 0, hybcell)); 1289*b6dfa339SMatthew G. Knepley } else { 1290*b6dfa339SMatthew G. Knepley /* Ghost new face: Replace positive side cell with cohesive cell */ 1291*b6dfa339SMatthew G. Knepley PetscCall(DMPlexInsertSupport(sdm, splitp, 0, hybcell)); 1292*b6dfa339SMatthew G. Knepley } 1293*b6dfa339SMatthew G. Knepley } else { 1294*b6dfa339SMatthew G. Knepley if (vals[s] < 0) { 1295cd0c2139SMatthew G Knepley /* Split old face: Replace negative side cell with cohesive cell */ 12969566063dSJacob Faibussowitsch PetscCall(DMPlexInsertSupport(sdm, newp, s, hybcell)); 1297cd0c2139SMatthew G Knepley } else { 1298cd0c2139SMatthew G Knepley /* Split new face: Replace positive side cell with cohesive cell */ 12999566063dSJacob Faibussowitsch PetscCall(DMPlexInsertSupport(sdm, splitp, s, hybcell)); 1300*b6dfa339SMatthew G. Knepley } 1301*b6dfa339SMatthew G. Knepley } 1302*b6dfa339SMatthew G. Knepley } 1303*b6dfa339SMatthew G. Knepley /* Get orientation for cohesive face using the positive side cell */ 1304e537020bSMatthew G. Knepley { 1305e537020bSMatthew G. Knepley const PetscInt *ncone, *nconeO; 1306*b6dfa339SMatthew G. Knepley PetscInt nconeSize, nc, ocell; 1307*b6dfa339SMatthew G. Knepley PetscBool flip; 1308e537020bSMatthew G. Knepley 1309*b6dfa339SMatthew G. Knepley if (supportSize > 1) {ocell = vals[0] < 0 ? support[1] : support[0];} 1310*b6dfa339SMatthew G. Knepley else {ocell = support[0]; flip = vals[0] < 0 ? PETSC_TRUE : PETSC_FALSE;} 1311*b6dfa339SMatthew G. Knepley PetscCall(DMPlexGetConeSize(dm, ocell, &nconeSize)); 1312*b6dfa339SMatthew G. Knepley PetscCall(DMPlexGetCone(dm, ocell, &ncone)); 13139566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeOrientation(dm, support[s], &nconeO)); 1314e537020bSMatthew G. Knepley for (nc = 0; nc < nconeSize; ++nc) { 1315e537020bSMatthew G. Knepley if (ncone[nc] == oldp) { 1316*b6dfa339SMatthew G. Knepley coneONew[0] = flip ? -(nconeO[nc]+1) : nconeO[nc]; 1317e537020bSMatthew G. Knepley break; 1318cd0c2139SMatthew G Knepley } 1319cd0c2139SMatthew G Knepley } 1320*b6dfa339SMatthew G. Knepley PetscCheck(nc < nconeSize, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Could not locate face %" PetscInt_FMT " in neighboring cell %" PetscInt_FMT, oldp, ocell); 1321e537020bSMatthew G. Knepley } 13224c367dbcSMatthew G. Knepley /* Cohesive cell: Old and new split face, then new cohesive faces */ 1323*b6dfa339SMatthew G. Knepley { 1324*b6dfa339SMatthew G. Knepley const PetscInt No = DMPolytopeTypeGetNumArrangments(ct)/2; 1325*b6dfa339SMatthew G. Knepley PetscCheck((coneONew[0] >= -No) && (coneONew[0] < No), PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid %s orientation %" PetscInt_FMT, DMPolytopeTypes[ct], coneONew[0]); 1326*b6dfa339SMatthew G. Knepley } 1327b5a892a1SMatthew G. Knepley const PetscInt *arr = DMPolytopeTypeGetArrangment(ct, coneONew[0]); 1328b5a892a1SMatthew G. Knepley 1329fd4b9f15SMatthew G. Knepley coneNew[0] = newp; /* Extracted negative side orientation above */ 13304c367dbcSMatthew G. Knepley coneNew[1] = splitp; 13314c367dbcSMatthew G. Knepley coneONew[1] = coneONew[0]; 1332e537020bSMatthew G. Knepley for (q = 0; q < coneSize; ++q) { 1333412e9a14SMatthew G. Knepley /* Hybrid faces must follow order from oriented end face */ 1334b5a892a1SMatthew G. Knepley const PetscInt qa = arr[q*2+0]; 1335b5a892a1SMatthew G. Knepley const PetscInt qo = arr[q*2+1]; 1336b5a892a1SMatthew G. Knepley DMPolytopeType ft = dep == 2 ? DM_POLYTOPE_SEGMENT : DM_POLYTOPE_POINT; 1337412e9a14SMatthew G. Knepley 13389566063dSJacob Faibussowitsch PetscCall(PetscFindInt(cone[qa], numSplitPoints[dep-1], splitPoints[dep-1], &v)); 133918c5995bSMatthew G. Knepley if (v < 0) { 13409566063dSJacob Faibussowitsch PetscCall(PetscFindInt(cone[qa], numUnsplitPoints[dep-1], unsplitPoints[dep-1], &v)); 134118c5995bSMatthew G. Knepley coneNew[2+q] = v + pMaxNew[dep] + numSplitPoints[dep] + numSplitPoints[dep-1]; 134218c5995bSMatthew G. Knepley } else { 134318c5995bSMatthew G. Knepley coneNew[2+q] = v + pMaxNew[dep] + numSplitPoints[dep]; 134418c5995bSMatthew G. Knepley } 1345b5a892a1SMatthew G. Knepley coneONew[2+q] = DMPolytopeTypeComposeOrientation(ft, qo, ornt[qa]); 1346e537020bSMatthew G. Knepley } 13479566063dSJacob Faibussowitsch PetscCall(DMPlexSetCone(sdm, hybcell, coneNew)); 13489566063dSJacob Faibussowitsch PetscCall(DMPlexSetConeOrientation(sdm, hybcell, coneONew)); 134996a07cd0SMatthew G. Knepley /* Label the hybrid cells on the boundary of the split */ 13509566063dSJacob Faibussowitsch if (hasUnsplit) PetscCall(DMLabelSetValue(label, -hybcell, dim)); 1351cd0c2139SMatthew G Knepley } else if (dep == 0) { 13524c367dbcSMatthew G. Knepley const PetscInt hybedge = p + pMaxNew[dep+1] + numSplitPoints[dep+1]; 1353cd0c2139SMatthew G Knepley 1354cd0c2139SMatthew G Knepley /* Split old vertex: Edges in old split faces and new cohesive edge */ 13554c367dbcSMatthew G. Knepley for (e = 0, qn = 0; e < supportSize; ++e) { 1356cd0c2139SMatthew G Knepley PetscInt val; 1357cd0c2139SMatthew G Knepley 13589566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, support[e], &val)); 1359cd0c2139SMatthew G Knepley if ((val == 1) || (val == (shift + 1))) { 13602582d50cSToby Isaac supportNew[qn++] = DMPlexShiftPoint_Internal(support[e], depth, depthShift) /*support[e] + depthOffset[dep+1]*/; 1361cd0c2139SMatthew G Knepley } 1362cd0c2139SMatthew G Knepley } 13634c367dbcSMatthew G. Knepley supportNew[qn] = hybedge; 13649566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupport(sdm, newp, supportNew)); 1365cd0c2139SMatthew G Knepley /* Split new vertex: Edges in new split faces and new cohesive edge */ 13664c367dbcSMatthew G. Knepley for (e = 0, qp = 0; e < supportSize; ++e) { 1367cd0c2139SMatthew G Knepley PetscInt val, edge; 1368cd0c2139SMatthew G Knepley 13699566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, support[e], &val)); 1370cd0c2139SMatthew G Knepley if (val == 1) { 13719566063dSJacob Faibussowitsch PetscCall(PetscFindInt(support[e], numSplitPoints[dep+1], splitPoints[dep+1], &edge)); 137208401ef6SPierre Jolivet PetscCheck(edge >= 0,comm, PETSC_ERR_ARG_WRONG, "Edge %d is not a split edge", support[e]); 13734c367dbcSMatthew G. Knepley supportNew[qp++] = edge + pMaxNew[dep+1]; 1374cd0c2139SMatthew G Knepley } else if (val == -(shift + 1)) { 13752582d50cSToby Isaac supportNew[qp++] = DMPlexShiftPoint_Internal(support[e], depth, depthShift) /*support[e] + depthOffset[dep+1]*/; 1376cd0c2139SMatthew G Knepley } 1377cd0c2139SMatthew G Knepley } 13784c367dbcSMatthew G. Knepley supportNew[qp] = hybedge; 13799566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupport(sdm, splitp, supportNew)); 13804c367dbcSMatthew G. Knepley /* Hybrid edge: Old and new split vertex */ 1381cd0c2139SMatthew G Knepley coneNew[0] = newp; 1382cd0c2139SMatthew G Knepley coneNew[1] = splitp; 13839566063dSJacob Faibussowitsch PetscCall(DMPlexSetCone(sdm, hybedge, coneNew)); 13844c367dbcSMatthew G. Knepley for (e = 0, qf = 0; e < supportSize; ++e) { 13854c367dbcSMatthew G. Knepley PetscInt val, edge; 13864c367dbcSMatthew G. Knepley 13879566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, support[e], &val)); 13884c367dbcSMatthew G. Knepley if (val == 1) { 13899566063dSJacob Faibussowitsch PetscCall(PetscFindInt(support[e], numSplitPoints[dep+1], splitPoints[dep+1], &edge)); 139008401ef6SPierre Jolivet PetscCheck(edge >= 0,comm, PETSC_ERR_ARG_WRONG, "Edge %d is not a split edge", support[e]); 13914c367dbcSMatthew G. Knepley supportNew[qf++] = edge + pMaxNew[dep+2] + numSplitPoints[dep+2]; 13924c367dbcSMatthew G. Knepley } 13934c367dbcSMatthew G. Knepley } 13949566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupport(sdm, hybedge, supportNew)); 1395cd0c2139SMatthew G Knepley } else if (dep == dim-2) { 13964c367dbcSMatthew G. Knepley const PetscInt hybface = p + pMaxNew[dep+1] + numSplitPoints[dep+1]; 13974c367dbcSMatthew G. Knepley 1398cd0c2139SMatthew G Knepley /* Split old edge: old vertices in cone so no change */ 1399cd0c2139SMatthew G Knepley /* Split new edge: new vertices in cone */ 1400cd0c2139SMatthew G Knepley for (q = 0; q < coneSize; ++q) { 14019566063dSJacob Faibussowitsch PetscCall(PetscFindInt(cone[q], numSplitPoints[dep-1], splitPoints[dep-1], &v)); 1402e1757548SMatthew G. Knepley if (v < 0) { 14039566063dSJacob Faibussowitsch PetscCall(PetscFindInt(cone[q], numUnsplitPoints[dep-1], unsplitPoints[dep-1], &v)); 140408401ef6SPierre Jolivet PetscCheck(v >= 0,PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Could not locate point %d in split or unsplit points of depth %d", cone[q], dep-1); 14052582d50cSToby Isaac coneNew[q] = DMPlexShiftPoint_Internal(cone[q], depth, depthShift) /*cone[q] + depthOffset[dep-1]*/; 1406e1757548SMatthew G. Knepley } else { 14074c367dbcSMatthew G. Knepley coneNew[q] = v + pMaxNew[dep-1]; 1408cd0c2139SMatthew G Knepley } 1409e1757548SMatthew G. Knepley } 14109566063dSJacob Faibussowitsch PetscCall(DMPlexSetCone(sdm, splitp, coneNew)); 1411cd0c2139SMatthew G Knepley /* Split old edge: Faces in positive side cells and old split faces */ 1412cd0c2139SMatthew G Knepley for (e = 0, q = 0; e < supportSize; ++e) { 1413cd0c2139SMatthew G Knepley PetscInt val; 1414cd0c2139SMatthew G Knepley 14159566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, support[e], &val)); 14164c367dbcSMatthew G. Knepley if (val == dim-1) { 14172582d50cSToby Isaac supportNew[q++] = DMPlexShiftPoint_Internal(support[e], depth, depthShift) /*support[e] + depthOffset[dep+1]*/; 14184c367dbcSMatthew G. Knepley } else if (val == (shift + dim-1)) { 14192582d50cSToby Isaac supportNew[q++] = DMPlexShiftPoint_Internal(support[e], depth, depthShift) /*support[e] + depthOffset[dep+1]*/; 1420cd0c2139SMatthew G Knepley } 1421cd0c2139SMatthew G Knepley } 1422b279cd2aSMatthew G. Knepley supportNew[q++] = p + pMaxNew[dep+1] + numSplitPoints[dep+1]; 14239566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupport(sdm, newp, supportNew)); 1424cd0c2139SMatthew G Knepley /* Split new edge: Faces in negative side cells and new split faces */ 1425cd0c2139SMatthew G Knepley for (e = 0, q = 0; e < supportSize; ++e) { 1426cd0c2139SMatthew G Knepley PetscInt val, face; 1427cd0c2139SMatthew G Knepley 14289566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, support[e], &val)); 1429cd0c2139SMatthew G Knepley if (val == dim-1) { 14309566063dSJacob Faibussowitsch PetscCall(PetscFindInt(support[e], numSplitPoints[dep+1], splitPoints[dep+1], &face)); 143108401ef6SPierre Jolivet PetscCheck(face >= 0,comm, PETSC_ERR_ARG_WRONG, "Face %d is not a split face", support[e]); 14324c367dbcSMatthew G. Knepley supportNew[q++] = face + pMaxNew[dep+1]; 1433cd0c2139SMatthew G Knepley } else if (val == -(shift + dim-1)) { 14342582d50cSToby Isaac supportNew[q++] = DMPlexShiftPoint_Internal(support[e], depth, depthShift) /*support[e] + depthOffset[dep+1]*/; 1435cd0c2139SMatthew G Knepley } 1436cd0c2139SMatthew G Knepley } 1437b279cd2aSMatthew G. Knepley supportNew[q++] = p + pMaxNew[dep+1] + numSplitPoints[dep+1]; 14389566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupport(sdm, splitp, supportNew)); 14394c367dbcSMatthew G. Knepley /* Hybrid face */ 14404c367dbcSMatthew G. Knepley coneNew[0] = newp; 14414c367dbcSMatthew G. Knepley coneNew[1] = splitp; 14424c367dbcSMatthew G. Knepley for (v = 0; v < coneSize; ++v) { 14434c367dbcSMatthew G. Knepley PetscInt vertex; 14449566063dSJacob Faibussowitsch PetscCall(PetscFindInt(cone[v], numSplitPoints[dep-1], splitPoints[dep-1], &vertex)); 1445e1757548SMatthew G. Knepley if (vertex < 0) { 14469566063dSJacob Faibussowitsch PetscCall(PetscFindInt(cone[v], numUnsplitPoints[dep-1], unsplitPoints[dep-1], &vertex)); 144708401ef6SPierre Jolivet PetscCheck(vertex >= 0,PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Could not locate point %d in split or unsplit points of depth %d", cone[v], dep-1); 1448e1757548SMatthew G. Knepley coneNew[2+v] = vertex + pMaxNew[dep] + numSplitPoints[dep] + numSplitPoints[dep-1]; 1449e1757548SMatthew G. Knepley } else { 14504c367dbcSMatthew G. Knepley coneNew[2+v] = vertex + pMaxNew[dep] + numSplitPoints[dep]; 14514c367dbcSMatthew G. Knepley } 1452e1757548SMatthew G. Knepley } 14539566063dSJacob Faibussowitsch PetscCall(DMPlexSetCone(sdm, hybface, coneNew)); 14544c367dbcSMatthew G. Knepley for (e = 0, qf = 0; e < supportSize; ++e) { 14554c367dbcSMatthew G. Knepley PetscInt val, face; 14564c367dbcSMatthew G. Knepley 14579566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, support[e], &val)); 14584c367dbcSMatthew G. Knepley if (val == dim-1) { 14599566063dSJacob Faibussowitsch PetscCall(PetscFindInt(support[e], numSplitPoints[dep+1], splitPoints[dep+1], &face)); 146008401ef6SPierre Jolivet PetscCheck(face >= 0,comm, PETSC_ERR_ARG_WRONG, "Face %d is not a split face", support[e]); 14614c367dbcSMatthew G. Knepley supportNew[qf++] = face + pMaxNew[dep+2] + numSplitPoints[dep+2]; 14624c367dbcSMatthew G. Knepley } 14634c367dbcSMatthew G. Knepley } 14649566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupport(sdm, hybface, supportNew)); 1465cd0c2139SMatthew G Knepley } 1466cd0c2139SMatthew G Knepley } 1467cd0c2139SMatthew G Knepley } 146818c5995bSMatthew G. Knepley for (dep = 0; dep <= depth; ++dep) { 146918c5995bSMatthew G. Knepley for (p = 0; p < numUnsplitPoints[dep]; ++p) { 147018c5995bSMatthew G. Knepley const PetscInt oldp = unsplitPoints[dep][p]; 14712582d50cSToby Isaac const PetscInt newp = DMPlexShiftPoint_Internal(oldp, depth, depthShift) /*oldp + depthOffset[dep]*/; 1472b5a892a1SMatthew G. Knepley const PetscInt *cone, *support; 1473e1757548SMatthew G. Knepley PetscInt coneSize, supportSize, supportSizeNew, q, qf, e, f, s; 147418c5995bSMatthew G. Knepley 14759566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, oldp, &coneSize)); 14769566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, oldp, &cone)); 14779566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dm, oldp, &supportSize)); 14789566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(dm, oldp, &support)); 147918c5995bSMatthew G. Knepley if (dep == 0) { 148018c5995bSMatthew G. Knepley const PetscInt hybedge = p + pMaxNew[dep+1] + numSplitPoints[dep+1] + numSplitPoints[dep]; 148118c5995bSMatthew G. Knepley 148218c5995bSMatthew G. Knepley /* Unsplit vertex */ 14839566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(sdm, newp, &supportSizeNew)); 148418c5995bSMatthew G. Knepley for (s = 0, q = 0; s < supportSize; ++s) { 14852582d50cSToby Isaac supportNew[q++] = DMPlexShiftPoint_Internal(support[s], depth, depthShift) /*support[s] + depthOffset[dep+1]*/; 14869566063dSJacob Faibussowitsch PetscCall(PetscFindInt(support[s], numSplitPoints[dep+1], splitPoints[dep+1], &e)); 148718c5995bSMatthew G. Knepley if (e >= 0) { 148818c5995bSMatthew G. Knepley supportNew[q++] = e + pMaxNew[dep+1]; 148918c5995bSMatthew G. Knepley } 149018c5995bSMatthew G. Knepley } 149118c5995bSMatthew G. Knepley supportNew[q++] = hybedge; 149218c5995bSMatthew G. Knepley supportNew[q++] = hybedge; 149308401ef6SPierre Jolivet PetscCheck(q == supportSizeNew,comm, PETSC_ERR_ARG_WRONG, "Support size %d != %d for vertex %d", q, supportSizeNew, newp); 14949566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupport(sdm, newp, supportNew)); 149518c5995bSMatthew G. Knepley /* Hybrid edge */ 149618c5995bSMatthew G. Knepley coneNew[0] = newp; 149718c5995bSMatthew G. Knepley coneNew[1] = newp; 14989566063dSJacob Faibussowitsch PetscCall(DMPlexSetCone(sdm, hybedge, coneNew)); 149918c5995bSMatthew G. Knepley for (e = 0, qf = 0; e < supportSize; ++e) { 150018c5995bSMatthew G. Knepley PetscInt val, edge; 150118c5995bSMatthew G. Knepley 15029566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, support[e], &val)); 150318c5995bSMatthew G. Knepley if (val == 1) { 15049566063dSJacob Faibussowitsch PetscCall(PetscFindInt(support[e], numSplitPoints[dep+1], splitPoints[dep+1], &edge)); 150508401ef6SPierre Jolivet PetscCheck(edge >= 0,comm, PETSC_ERR_ARG_WRONG, "Edge %d is not a split edge", support[e]); 150618c5995bSMatthew G. Knepley supportNew[qf++] = edge + pMaxNew[dep+2] + numSplitPoints[dep+2]; 1507e1757548SMatthew G. Knepley } else if (val == (shift2 + 1)) { 15089566063dSJacob Faibussowitsch PetscCall(PetscFindInt(support[e], numUnsplitPoints[dep+1], unsplitPoints[dep+1], &edge)); 150908401ef6SPierre Jolivet PetscCheck(edge >= 0,comm, PETSC_ERR_ARG_WRONG, "Edge %d is not a unsplit edge", support[e]); 1510e1757548SMatthew G. Knepley supportNew[qf++] = edge + pMaxNew[dep+2] + numSplitPoints[dep+2] + numSplitPoints[dep+1]; 151118c5995bSMatthew G. Knepley } 151218c5995bSMatthew G. Knepley } 15139566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupport(sdm, hybedge, supportNew)); 1514e1757548SMatthew G. Knepley } else if (dep == dim-2) { 1515e1757548SMatthew G. Knepley const PetscInt hybface = p + pMaxNew[dep+1] + numSplitPoints[dep+1] + numSplitPoints[dep]; 1516e1757548SMatthew G. Knepley 1517da1dd7e4SMatthew G. Knepley /* Unsplit edge: Faces into original edge, split face, and hybrid face twice */ 1518e1757548SMatthew G. Knepley for (f = 0, qf = 0; f < supportSize; ++f) { 1519e1757548SMatthew G. Knepley PetscInt val, face; 1520e1757548SMatthew G. Knepley 15219566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, support[f], &val)); 1522e1757548SMatthew G. Knepley if (val == dim-1) { 15239566063dSJacob Faibussowitsch PetscCall(PetscFindInt(support[f], numSplitPoints[dep+1], splitPoints[dep+1], &face)); 152408401ef6SPierre Jolivet PetscCheck(face >= 0,comm, PETSC_ERR_ARG_WRONG, "Face %d is not a split face", support[f]); 15252582d50cSToby Isaac supportNew[qf++] = DMPlexShiftPoint_Internal(support[f], depth, depthShift) /*support[f] + depthOffset[dep+1]*/; 1526e1757548SMatthew G. Knepley supportNew[qf++] = face + pMaxNew[dep+1]; 1527e1757548SMatthew G. Knepley } else { 15282582d50cSToby Isaac supportNew[qf++] = DMPlexShiftPoint_Internal(support[f], depth, depthShift) /*support[f] + depthOffset[dep+1]*/; 1529e1757548SMatthew G. Knepley } 1530e1757548SMatthew G. Knepley } 1531e1757548SMatthew G. Knepley supportNew[qf++] = hybface; 1532e1757548SMatthew G. Knepley supportNew[qf++] = hybface; 15339566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(sdm, newp, &supportSizeNew)); 153408401ef6SPierre Jolivet PetscCheck(qf == supportSizeNew,PETSC_COMM_SELF, PETSC_ERR_PLIB, "Support size for unsplit edge %d is %d != %d", newp, qf, supportSizeNew); 15359566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupport(sdm, newp, supportNew)); 1536e1757548SMatthew G. Knepley /* Add hybrid face */ 1537e1757548SMatthew G. Knepley coneNew[0] = newp; 1538212cc919SMatthew G. Knepley coneNew[1] = newp; 15399566063dSJacob Faibussowitsch PetscCall(PetscFindInt(cone[0], numUnsplitPoints[dep-1], unsplitPoints[dep-1], &v)); 154008401ef6SPierre Jolivet PetscCheck(v >= 0,comm, PETSC_ERR_ARG_WRONG, "Vertex %d is not an unsplit vertex", cone[0]); 1541212cc919SMatthew G. Knepley coneNew[2] = v + pMaxNew[dep] + numSplitPoints[dep] + numSplitPoints[dep-1]; 15429566063dSJacob Faibussowitsch PetscCall(PetscFindInt(cone[1], numUnsplitPoints[dep-1], unsplitPoints[dep-1], &v)); 154308401ef6SPierre Jolivet PetscCheck(v >= 0,comm, PETSC_ERR_ARG_WRONG, "Vertex %d is not an unsplit vertex", cone[1]); 1544e1757548SMatthew G. Knepley coneNew[3] = v + pMaxNew[dep] + numSplitPoints[dep] + numSplitPoints[dep-1]; 15459566063dSJacob Faibussowitsch PetscCall(DMPlexSetCone(sdm, hybface, coneNew)); 1546da1dd7e4SMatthew G. Knepley for (f = 0, qf = 0; f < supportSize; ++f) { 1547da1dd7e4SMatthew G. Knepley PetscInt val, face; 1548da1dd7e4SMatthew G. Knepley 15499566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, support[f], &val)); 1550da1dd7e4SMatthew G. Knepley if (val == dim-1) { 15519566063dSJacob Faibussowitsch PetscCall(PetscFindInt(support[f], numSplitPoints[dep+1], splitPoints[dep+1], &face)); 1552da1dd7e4SMatthew G. Knepley supportNew[qf++] = face + pMaxNew[dep+2] + numSplitPoints[dep+2]; 1553da1dd7e4SMatthew G. Knepley } 1554da1dd7e4SMatthew G. Knepley } 15559566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(sdm, hybface, &supportSizeNew)); 155608401ef6SPierre Jolivet PetscCheck(qf == supportSizeNew,PETSC_COMM_SELF, PETSC_ERR_PLIB, "Support size for hybrid face %d is %d != %d", hybface, qf, supportSizeNew); 15579566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupport(sdm, hybface, supportNew)); 1558cd0c2139SMatthew G Knepley } 1559cd0c2139SMatthew G Knepley } 1560cd0c2139SMatthew G Knepley } 1561cd0c2139SMatthew G Knepley /* Step 6b: Replace split points in negative side cones */ 1562cd0c2139SMatthew G Knepley for (sp = 0; sp < numSP; ++sp) { 1563cd0c2139SMatthew G Knepley PetscInt dep = values[sp]; 1564cd0c2139SMatthew G Knepley IS pIS; 1565cd0c2139SMatthew G Knepley PetscInt numPoints; 1566cd0c2139SMatthew G Knepley const PetscInt *points; 1567cd0c2139SMatthew G Knepley 1568cd0c2139SMatthew G Knepley if (dep >= 0) continue; 15699566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(label, dep, &pIS)); 1570cd0c2139SMatthew G Knepley if (!pIS) continue; 1571cd0c2139SMatthew G Knepley dep = -dep - shift; 15729566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(pIS, &numPoints)); 15739566063dSJacob Faibussowitsch PetscCall(ISGetIndices(pIS, &points)); 1574cd0c2139SMatthew G Knepley for (p = 0; p < numPoints; ++p) { 1575cd0c2139SMatthew G Knepley const PetscInt oldp = points[p]; 15762582d50cSToby Isaac const PetscInt newp = DMPlexShiftPoint_Internal(oldp, depth, depthShift) /*depthOffset[dep] + oldp*/; 1577cd0c2139SMatthew G Knepley const PetscInt *cone; 1578cd0c2139SMatthew G Knepley PetscInt coneSize, c; 157950cf782dSMatthew G. Knepley /* PetscBool replaced = PETSC_FALSE; */ 1580cd0c2139SMatthew G Knepley 1581cd0c2139SMatthew G Knepley /* Negative edge: replace split vertex */ 1582cd0c2139SMatthew G Knepley /* Negative cell: replace split face */ 15839566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(sdm, newp, &coneSize)); 15849566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(sdm, newp, &cone)); 1585cd0c2139SMatthew G Knepley for (c = 0; c < coneSize; ++c) { 1586e38fbfedSToby Isaac const PetscInt coldp = DMPlexShiftPointInverse_Internal(cone[c],depth,depthShift); 1587cd0c2139SMatthew G Knepley PetscInt csplitp, cp, val; 1588cd0c2139SMatthew G Knepley 15899566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, coldp, &val)); 1590cd0c2139SMatthew G Knepley if (val == dep-1) { 15919566063dSJacob Faibussowitsch PetscCall(PetscFindInt(coldp, numSplitPoints[dep-1], splitPoints[dep-1], &cp)); 159208401ef6SPierre Jolivet PetscCheck(cp >= 0,comm, PETSC_ERR_ARG_WRONG, "Point %d is not a split point of dimension %d", oldp, dep-1); 1593cd0c2139SMatthew G Knepley csplitp = pMaxNew[dep-1] + cp; 15949566063dSJacob Faibussowitsch PetscCall(DMPlexInsertCone(sdm, newp, c, csplitp)); 159550cf782dSMatthew G. Knepley /* replaced = PETSC_TRUE; */ 1596cd0c2139SMatthew G Knepley } 1597cd0c2139SMatthew G Knepley } 15984a189a86SMatthew G. Knepley /* Cells with only a vertex or edge on the submesh have no replacement */ 159928b400f6SJacob Faibussowitsch /* PetscCheck(replaced,comm, PETSC_ERR_ARG_WRONG, "The cone of point %d does not contain split points", oldp); */ 1600cd0c2139SMatthew G Knepley } 16019566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(pIS, &points)); 16029566063dSJacob Faibussowitsch PetscCall(ISDestroy(&pIS)); 1603cd0c2139SMatthew G Knepley } 1604fa8e8ae5SToby Isaac /* Step 7: Coordinates */ 16059566063dSJacob Faibussowitsch PetscCall(DMPlexShiftCoordinates_Internal(dm, depthShift, sdm)); 16069566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateSection(sdm, &coordSection)); 16079566063dSJacob Faibussowitsch PetscCall(DMGetCoordinatesLocal(sdm, &coordinates)); 16089566063dSJacob Faibussowitsch PetscCall(VecGetArray(coordinates, &coords)); 1609cd0c2139SMatthew G Knepley for (v = 0; v < (numSplitPoints ? numSplitPoints[0] : 0); ++v) { 16102582d50cSToby Isaac const PetscInt newp = DMPlexShiftPoint_Internal(splitPoints[0][v], depth, depthShift) /*depthOffset[0] + splitPoints[0][v]*/; 1611cd0c2139SMatthew G Knepley const PetscInt splitp = pMaxNew[0] + v; 1612cd0c2139SMatthew G Knepley PetscInt dof, off, soff, d; 1613cd0c2139SMatthew G Knepley 16149566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(coordSection, newp, &dof)); 16159566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(coordSection, newp, &off)); 16169566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(coordSection, splitp, &soff)); 1617cd0c2139SMatthew G Knepley for (d = 0; d < dof; ++d) coords[soff+d] = coords[off+d]; 1618cd0c2139SMatthew G Knepley } 16199566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(coordinates, &coords)); 1620fa8e8ae5SToby Isaac /* Step 8: SF, if I can figure this out we can split the mesh in parallel */ 16219566063dSJacob Faibussowitsch PetscCall(DMPlexShiftSF_Internal(dm, depthShift, sdm)); 1622*b6dfa339SMatthew G. Knepley /* TODO We need to associate the ghost points with the correct replica */ 1623fa8e8ae5SToby Isaac /* Step 9: Labels */ 16249566063dSJacob Faibussowitsch PetscCall(DMPlexShiftLabels_Internal(dm, depthShift, sdm)); 16259566063dSJacob Faibussowitsch PetscCall(DMPlexCreateVTKLabel_Internal(dm, PETSC_FALSE, sdm)); 16269566063dSJacob Faibussowitsch PetscCall(DMGetNumLabels(sdm, &numLabels)); 1627cd0c2139SMatthew G Knepley for (dep = 0; dep <= depth; ++dep) { 1628cd0c2139SMatthew G Knepley for (p = 0; p < numSplitPoints[dep]; ++p) { 16292582d50cSToby Isaac const PetscInt newp = DMPlexShiftPoint_Internal(splitPoints[dep][p], depth, depthShift) /*depthOffset[dep] + splitPoints[dep][p]*/; 1630cd0c2139SMatthew G Knepley const PetscInt splitp = pMaxNew[dep] + p; 1631cd0c2139SMatthew G Knepley PetscInt l; 1632cd0c2139SMatthew G Knepley 16337db7e0a7SMatthew G. Knepley if (splitLabel) { 16347db7e0a7SMatthew G. Knepley const PetscInt val = 100 + dep; 16357db7e0a7SMatthew G. Knepley 16369566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(splitLabel, newp, val)); 16379566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(splitLabel, splitp, -val)); 16387db7e0a7SMatthew G. Knepley } 1639cd0c2139SMatthew G Knepley for (l = 0; l < numLabels; ++l) { 1640cd0c2139SMatthew G Knepley DMLabel mlabel; 1641cd0c2139SMatthew G Knepley const char *lname; 1642cd0c2139SMatthew G Knepley PetscInt val; 16439a356370SMatthew G. Knepley PetscBool isDepth; 1644cd0c2139SMatthew G Knepley 16459566063dSJacob Faibussowitsch PetscCall(DMGetLabelName(sdm, l, &lname)); 16469566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(lname, "depth", &isDepth)); 16479a356370SMatthew G. Knepley if (isDepth) continue; 16489566063dSJacob Faibussowitsch PetscCall(DMGetLabel(sdm, lname, &mlabel)); 16499566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(mlabel, newp, &val)); 1650cd0c2139SMatthew G Knepley if (val >= 0) { 16519566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(mlabel, splitp, val)); 1652cd0c2139SMatthew G Knepley } 1653cd0c2139SMatthew G Knepley } 1654cd0c2139SMatthew G Knepley } 1655cd0c2139SMatthew G Knepley } 1656cd0c2139SMatthew G Knepley for (sp = 0; sp < numSP; ++sp) { 1657cd0c2139SMatthew G Knepley const PetscInt dep = values[sp]; 1658cd0c2139SMatthew G Knepley 1659cd0c2139SMatthew G Knepley if ((dep < 0) || (dep > depth)) continue; 16609566063dSJacob Faibussowitsch if (splitIS[dep]) PetscCall(ISRestoreIndices(splitIS[dep], &splitPoints[dep])); 16619566063dSJacob Faibussowitsch PetscCall(ISDestroy(&splitIS[dep])); 16629566063dSJacob Faibussowitsch if (unsplitIS[dep]) PetscCall(ISRestoreIndices(unsplitIS[dep], &unsplitPoints[dep])); 16639566063dSJacob Faibussowitsch PetscCall(ISDestroy(&unsplitIS[dep])); 1664cd0c2139SMatthew G Knepley } 1665*b6dfa339SMatthew G. Knepley if (ghostIS) PetscCall(ISRestoreIndices(ghostIS, &ghostPoints)); 1666*b6dfa339SMatthew G. Knepley PetscCall(ISDestroy(&ghostIS)); 1667cd0c2139SMatthew G Knepley if (label) { 16689566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(valueIS, &values)); 16699566063dSJacob Faibussowitsch PetscCall(ISDestroy(&valueIS)); 1670cd0c2139SMatthew G Knepley } 16710d4d4d06SMatthew G. Knepley for (d = 0; d <= depth; ++d) { 16729566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthStratum(sdm, d, NULL, &pEnd)); 167336dbac82SMatthew G. Knepley pMaxNew[d] = pEnd - numHybridPoints[d] - numHybridPointsOld[d]; 16740d4d4d06SMatthew G. Knepley } 16759566063dSJacob Faibussowitsch PetscCall(PetscFree3(coneNew, coneONew, supportNew)); 16769566063dSJacob Faibussowitsch PetscCall(PetscFree5(depthMax, depthEnd, depthShift, pMaxNew, numHybridPointsOld)); 16779566063dSJacob Faibussowitsch PetscCall(PetscFree7(splitIS, unsplitIS, numSplitPoints, numUnsplitPoints, numHybridPoints, splitPoints, unsplitPoints)); 1678cd0c2139SMatthew G Knepley PetscFunctionReturn(0); 1679cd0c2139SMatthew G Knepley } 1680cd0c2139SMatthew G Knepley 1681cd0c2139SMatthew G Knepley /*@C 1682cd0c2139SMatthew G Knepley DMPlexConstructCohesiveCells - Construct cohesive cells which split the face along an internal interface 1683cd0c2139SMatthew G Knepley 1684cd0c2139SMatthew G Knepley Collective on dm 1685cd0c2139SMatthew G Knepley 1686cd0c2139SMatthew G Knepley Input Parameters: 1687cd0c2139SMatthew G Knepley + dm - The original DM 168853156dfcSMatthew G. Knepley - label - The label specifying the boundary faces (this could be auto-generated) 1689cd0c2139SMatthew G Knepley 1690cd0c2139SMatthew G Knepley Output Parameters: 16917db7e0a7SMatthew G. Knepley + splitLabel - The label containing the split points, or NULL if no output is desired 1692cd0c2139SMatthew G Knepley - dmSplit - The new DM 1693cd0c2139SMatthew G Knepley 1694cd0c2139SMatthew G Knepley Level: developer 1695cd0c2139SMatthew G Knepley 16962be2b188SMatthew G Knepley .seealso: DMCreate(), DMPlexLabelCohesiveComplete() 1697cd0c2139SMatthew G Knepley @*/ 16987db7e0a7SMatthew G. Knepley PetscErrorCode DMPlexConstructCohesiveCells(DM dm, DMLabel label, DMLabel splitLabel, DM *dmSplit) 1699cd0c2139SMatthew G Knepley { 1700cd0c2139SMatthew G Knepley DM sdm; 1701cd0c2139SMatthew G Knepley PetscInt dim; 1702cd0c2139SMatthew G Knepley 1703cd0c2139SMatthew G Knepley PetscFunctionBegin; 1704cd0c2139SMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 1705064a246eSJacob Faibussowitsch PetscValidPointer(dmSplit, 4); 17069566063dSJacob Faibussowitsch PetscCall(DMCreate(PetscObjectComm((PetscObject)dm), &sdm)); 17079566063dSJacob Faibussowitsch PetscCall(DMSetType(sdm, DMPLEX)); 17089566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 17099566063dSJacob Faibussowitsch PetscCall(DMSetDimension(sdm, dim)); 1710cd0c2139SMatthew G Knepley switch (dim) { 1711cd0c2139SMatthew G Knepley case 2: 1712cd0c2139SMatthew G Knepley case 3: 17139566063dSJacob Faibussowitsch PetscCall(DMPlexConstructCohesiveCells_Internal(dm, label, splitLabel, sdm)); 1714cd0c2139SMatthew G Knepley break; 1715cd0c2139SMatthew G Knepley default: 171698921bdaSJacob Faibussowitsch SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Cannot construct cohesive cells for dimension %d", dim); 1717cd0c2139SMatthew G Knepley } 1718cd0c2139SMatthew G Knepley *dmSplit = sdm; 1719cd0c2139SMatthew G Knepley PetscFunctionReturn(0); 1720cd0c2139SMatthew G Knepley } 1721cd0c2139SMatthew G Knepley 17220f66a230SMatthew G. Knepley /* Returns the side of the surface for a given cell with a face on the surface */ 17230f66a230SMatthew G. Knepley static PetscErrorCode GetSurfaceSide_Static(DM dm, DM subdm, PetscInt numSubpoints, const PetscInt *subpoints, PetscInt cell, PetscInt face, PetscBool *pos) 17240f66a230SMatthew G. Knepley { 17250f66a230SMatthew G. Knepley const PetscInt *cone, *ornt; 17260f66a230SMatthew G. Knepley PetscInt dim, coneSize, c; 17270f66a230SMatthew G. Knepley 17280f66a230SMatthew G. Knepley PetscFunctionBegin; 17290f66a230SMatthew G. Knepley *pos = PETSC_TRUE; 17309566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 17319566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, cell, &coneSize)); 17329566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, cell, &cone)); 17339566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeOrientation(dm, cell, &ornt)); 17340f66a230SMatthew G. Knepley for (c = 0; c < coneSize; ++c) { 17350f66a230SMatthew G. Knepley if (cone[c] == face) { 17360f66a230SMatthew G. Knepley PetscInt o = ornt[c]; 17370f66a230SMatthew G. Knepley 17380f66a230SMatthew G. Knepley if (subdm) { 17390f66a230SMatthew G. Knepley const PetscInt *subcone, *subornt; 17400f66a230SMatthew G. Knepley PetscInt subpoint, subface, subconeSize, sc; 17410f66a230SMatthew G. Knepley 17429566063dSJacob Faibussowitsch PetscCall(PetscFindInt(cell, numSubpoints, subpoints, &subpoint)); 17439566063dSJacob Faibussowitsch PetscCall(PetscFindInt(face, numSubpoints, subpoints, &subface)); 17449566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(subdm, subpoint, &subconeSize)); 17459566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(subdm, subpoint, &subcone)); 17469566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeOrientation(subdm, subpoint, &subornt)); 17470f66a230SMatthew G. Knepley for (sc = 0; sc < subconeSize; ++sc) { 17480f66a230SMatthew G. Knepley if (subcone[sc] == subface) { 17490f66a230SMatthew G. Knepley o = subornt[0]; 17500f66a230SMatthew G. Knepley break; 17510f66a230SMatthew G. Knepley } 17520f66a230SMatthew G. Knepley } 175308401ef6SPierre Jolivet PetscCheck(sc < subconeSize,PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Could not find subpoint %d (%d) in cone for subpoint %d (%d)", subface, face, subpoint, cell); 17540f66a230SMatthew G. Knepley } 17550f66a230SMatthew G. Knepley if (o >= 0) *pos = PETSC_TRUE; 17560f66a230SMatthew G. Knepley else *pos = PETSC_FALSE; 17570f66a230SMatthew G. Knepley break; 17580f66a230SMatthew G. Knepley } 17590f66a230SMatthew G. Knepley } 176008401ef6SPierre Jolivet PetscCheck(c != coneSize,PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Cell %d in split face %d support does not have it in the cone", cell, face); 17610f66a230SMatthew G. Knepley PetscFunctionReturn(0); 17620f66a230SMatthew G. Knepley } 17630f66a230SMatthew G. Knepley 1764cd0c2139SMatthew G Knepley /*@ 17650f66a230SMatthew G. Knepley DMPlexLabelCohesiveComplete - Starting with a label marking points on an internal surface, we add all other mesh pieces 1766cd0c2139SMatthew G Knepley to complete the surface 1767cd0c2139SMatthew G Knepley 1768cd0c2139SMatthew G Knepley Input Parameters: 1769cd0c2139SMatthew G Knepley + dm - The DM 17700f66a230SMatthew G. Knepley . label - A DMLabel marking the surface 17710f66a230SMatthew G. Knepley . blabel - A DMLabel marking the vertices on the boundary which will not be duplicated, or NULL to find them automatically 1772bb55d314SMatthew G. Knepley . flip - Flag to flip the submesh normal and replace points on the other side 177347946fd8SMatthew G. Knepley - subdm - The subDM associated with the label, or NULL 1774cd0c2139SMatthew G Knepley 1775cd0c2139SMatthew G Knepley Output Parameter: 1776cd0c2139SMatthew G Knepley . label - A DMLabel marking all surface points 1777cd0c2139SMatthew G Knepley 17780f66a230SMatthew G. Knepley Note: The vertices in blabel are called "unsplit" in the terminology from hybrid cell creation. 17790f66a230SMatthew G. Knepley 1780cd0c2139SMatthew G Knepley Level: developer 1781cd0c2139SMatthew G Knepley 17822be2b188SMatthew G Knepley .seealso: DMPlexConstructCohesiveCells(), DMPlexLabelComplete() 1783cd0c2139SMatthew G Knepley @*/ 17840f66a230SMatthew G. Knepley PetscErrorCode DMPlexLabelCohesiveComplete(DM dm, DMLabel label, DMLabel blabel, PetscBool flip, DM subdm) 1785cd0c2139SMatthew G Knepley { 1786d90583fdSMatthew G. Knepley DMLabel depthLabel; 17878630cb1aSMatthew G. Knepley IS dimIS, subpointIS = NULL, facePosIS, faceNegIS, crossEdgeIS = NULL; 178847946fd8SMatthew G. Knepley const PetscInt *points, *subpoints; 1789bb55d314SMatthew G. Knepley const PetscInt rev = flip ? -1 : 1; 1790*b6dfa339SMatthew G. Knepley PetscInt shift = 100, shift2 = 200, shift3 = 300, dim, depth, dep, cStart, cEnd, vStart, vEnd, numPoints, numSubpoints, p, val; 1791cd0c2139SMatthew G Knepley 1792cd0c2139SMatthew G Knepley PetscFunctionBegin; 17939566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepth(dm, &depth)); 17949566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 17959566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthLabel(dm, &depthLabel)); 179647946fd8SMatthew G. Knepley if (subdm) { 17979566063dSJacob Faibussowitsch PetscCall(DMPlexGetSubpointIS(subdm, &subpointIS)); 179847946fd8SMatthew G. Knepley if (subpointIS) { 17999566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(subpointIS, &numSubpoints)); 18009566063dSJacob Faibussowitsch PetscCall(ISGetIndices(subpointIS, &subpoints)); 180147946fd8SMatthew G. Knepley } 180247946fd8SMatthew G. Knepley } 1803d7c8f101SMatthew G. Knepley /* Mark cell on the fault, and its faces which touch the fault: cell orientation for face gives the side of the fault */ 18049566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(label, dim-1, &dimIS)); 180597d8846cSMatthew Knepley if (!dimIS) PetscFunctionReturn(0); 18069566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(dimIS, &numPoints)); 18079566063dSJacob Faibussowitsch PetscCall(ISGetIndices(dimIS, &points)); 1808d7c8f101SMatthew G. Knepley for (p = 0; p < numPoints; ++p) { /* Loop over fault faces */ 1809cd0c2139SMatthew G Knepley const PetscInt *support; 1810cd0c2139SMatthew G Knepley PetscInt supportSize, s; 1811cd0c2139SMatthew G Knepley 18129566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dm, points[p], &supportSize)); 1813c4419245SMatthew G. Knepley #if 0 1814c4419245SMatthew G. Knepley if (supportSize != 2) { 1815c4419245SMatthew G. Knepley const PetscInt *lp; 1816c4419245SMatthew G. Knepley PetscInt Nlp, pind; 1817c4419245SMatthew G. Knepley 1818c4419245SMatthew G. Knepley /* Check that for a cell with a single support face, that face is in the SF */ 1819c4419245SMatthew G. Knepley /* THis check only works for the remote side. We would need root side information */ 18209566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(dm->sf, NULL, &Nlp, &lp, NULL)); 18219566063dSJacob Faibussowitsch PetscCall(PetscFindInt(points[p], Nlp, lp, &pind)); 182208401ef6SPierre Jolivet PetscCheck(pind >= 0,PetscObjectComm((PetscObject) dm), PETSC_ERR_ARG_WRONG, "Split face %d has %d != 2 supports, and the face is not shared with another process", points[p], supportSize); 1823c4419245SMatthew G. Knepley } 1824c4419245SMatthew G. Knepley #endif 18259566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(dm, points[p], &support)); 1826cd0c2139SMatthew G Knepley for (s = 0; s < supportSize; ++s) { 18270f66a230SMatthew G. Knepley const PetscInt *cone; 1828cd0c2139SMatthew G Knepley PetscInt coneSize, c; 18290f66a230SMatthew G. Knepley PetscBool pos; 1830cd0c2139SMatthew G Knepley 18319566063dSJacob Faibussowitsch PetscCall(GetSurfaceSide_Static(dm, subdm, numSubpoints, subpoints, support[s], points[p], &pos)); 18329566063dSJacob Faibussowitsch if (pos) PetscCall(DMLabelSetValue(label, support[s], rev*(shift+dim))); 18339566063dSJacob Faibussowitsch else PetscCall(DMLabelSetValue(label, support[s], -rev*(shift+dim))); 18340f66a230SMatthew G. Knepley if (rev < 0) pos = !pos ? PETSC_TRUE : PETSC_FALSE; 18350f66a230SMatthew G. Knepley /* Put faces touching the fault in the label */ 18369566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, support[s], &coneSize)); 18379566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, support[s], &cone)); 1838cd0c2139SMatthew G Knepley for (c = 0; c < coneSize; ++c) { 1839cd0c2139SMatthew G Knepley const PetscInt point = cone[c]; 1840cd0c2139SMatthew G Knepley 18419566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, point, &val)); 1842cd0c2139SMatthew G Knepley if (val == -1) { 1843cd0c2139SMatthew G Knepley PetscInt *closure = NULL; 1844cd0c2139SMatthew G Knepley PetscInt closureSize, cl; 1845cd0c2139SMatthew G Knepley 18469566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(dm, point, PETSC_TRUE, &closureSize, &closure)); 1847cd0c2139SMatthew G Knepley for (cl = 0; cl < closureSize*2; cl += 2) { 1848cd0c2139SMatthew G Knepley const PetscInt clp = closure[cl]; 1849a0541d8aSMatthew G. Knepley PetscInt bval = -1; 1850cd0c2139SMatthew G Knepley 18519566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, clp, &val)); 18529566063dSJacob Faibussowitsch if (blabel) PetscCall(DMLabelGetValue(blabel, clp, &bval)); 1853a0541d8aSMatthew G. Knepley if ((val >= 0) && (val < dim-1) && (bval < 0)) { 18549566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(label, point, pos == PETSC_TRUE ? shift+dim-1 : -(shift+dim-1))); 1855cd0c2139SMatthew G Knepley break; 1856cd0c2139SMatthew G Knepley } 1857cd0c2139SMatthew G Knepley } 18589566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dm, point, PETSC_TRUE, &closureSize, &closure)); 1859cd0c2139SMatthew G Knepley } 1860cd0c2139SMatthew G Knepley } 1861cd0c2139SMatthew G Knepley } 1862cd0c2139SMatthew G Knepley } 1863a0541d8aSMatthew G. Knepley /* Mark boundary points as unsplit */ 186486200784SMatthew G. Knepley if (blabel) { 18659566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(blabel, 1, &dimIS)); 18669566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(dimIS, &numPoints)); 18679566063dSJacob Faibussowitsch PetscCall(ISGetIndices(dimIS, &points)); 1868a0541d8aSMatthew G. Knepley for (p = 0; p < numPoints; ++p) { 1869a0541d8aSMatthew G. Knepley const PetscInt point = points[p]; 1870a0541d8aSMatthew G. Knepley PetscInt val, bval; 1871a0541d8aSMatthew G. Knepley 18729566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(blabel, point, &bval)); 1873a0541d8aSMatthew G. Knepley if (bval >= 0) { 18749566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, point, &val)); 1875f7019248SMatthew G. Knepley if ((val < 0) || (val > dim)) { 1876f7019248SMatthew G. Knepley /* This could be a point added from splitting a vertex on an adjacent fault, otherwise its just wrong */ 18779566063dSJacob Faibussowitsch PetscCall(DMLabelClearValue(blabel, point, bval)); 1878f7019248SMatthew G. Knepley } 1879f7019248SMatthew G. Knepley } 1880f7019248SMatthew G. Knepley } 1881f7019248SMatthew G. Knepley for (p = 0; p < numPoints; ++p) { 1882f7019248SMatthew G. Knepley const PetscInt point = points[p]; 1883f7019248SMatthew G. Knepley PetscInt val, bval; 1884f7019248SMatthew G. Knepley 18859566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(blabel, point, &bval)); 1886f7019248SMatthew G. Knepley if (bval >= 0) { 188786200784SMatthew G. Knepley const PetscInt *cone, *support; 188886200784SMatthew G. Knepley PetscInt coneSize, supportSize, s, valA, valB, valE; 188986200784SMatthew G. Knepley 1890a0541d8aSMatthew G. Knepley /* Mark as unsplit */ 18919566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, point, &val)); 189208401ef6SPierre Jolivet PetscCheck(!(val < 0) && !(val > dim),PETSC_COMM_SELF, PETSC_ERR_PLIB, "Point %d has label value %d, should be part of the fault", point, val); 18939566063dSJacob Faibussowitsch PetscCall(DMLabelClearValue(label, point, val)); 18949566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(label, point, shift2+val)); 18952c06a818SMatthew G. Knepley /* Check for cross-edge 18962c06a818SMatthew G. Knepley A cross-edge has endpoints which are both on the boundary of the surface, but the edge itself is not. */ 189786200784SMatthew G. Knepley if (val != 0) continue; 18989566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(dm, point, &support)); 18999566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dm, point, &supportSize)); 190086200784SMatthew G. Knepley for (s = 0; s < supportSize; ++s) { 19019566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, support[s], &cone)); 19029566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, support[s], &coneSize)); 190308401ef6SPierre Jolivet PetscCheck(coneSize == 2,PETSC_COMM_SELF, PETSC_ERR_PLIB, "Edge %D has %D vertices != 2", support[s], coneSize); 19049566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(blabel, cone[0], &valA)); 19059566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(blabel, cone[1], &valB)); 19069566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(blabel, support[s], &valE)); 19079566063dSJacob Faibussowitsch if ((valE < 0) && (valA >= 0) && (valB >= 0) && (cone[0] != cone[1])) PetscCall(DMLabelSetValue(blabel, support[s], 2)); 190886200784SMatthew G. Knepley } 1909a0541d8aSMatthew G. Knepley } 1910a0541d8aSMatthew G. Knepley } 19119566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(dimIS, &points)); 19129566063dSJacob Faibussowitsch PetscCall(ISDestroy(&dimIS)); 1913a0541d8aSMatthew G. Knepley } 1914*b6dfa339SMatthew G. Knepley /* Mark ghost fault cells */ 1915*b6dfa339SMatthew G. Knepley { 1916*b6dfa339SMatthew G. Knepley PetscSF sf; 1917*b6dfa339SMatthew G. Knepley const PetscInt *leaves; 1918*b6dfa339SMatthew G. Knepley PetscInt Nl, l; 1919*b6dfa339SMatthew G. Knepley 1920*b6dfa339SMatthew G. Knepley PetscCall(DMGetPointSF(dm, &sf)); 1921*b6dfa339SMatthew G. Knepley PetscCall(PetscSFGetGraph(sf, NULL, &Nl, &leaves, NULL)); 1922*b6dfa339SMatthew G. Knepley if (Nl > 0) { 1923*b6dfa339SMatthew G. Knepley for (p = 0; p < numPoints; ++p) { 1924*b6dfa339SMatthew G. Knepley const PetscInt point = points[p]; 1925*b6dfa339SMatthew G. Knepley PetscInt val; 1926*b6dfa339SMatthew G. Knepley 1927*b6dfa339SMatthew G. Knepley PetscCall(PetscFindInt(point, Nl, leaves, &l)); 1928*b6dfa339SMatthew G. Knepley if (l >= 0) { 1929*b6dfa339SMatthew G. Knepley PetscInt *closure = NULL; 1930*b6dfa339SMatthew G. Knepley PetscInt closureSize, cl; 1931*b6dfa339SMatthew G. Knepley 1932*b6dfa339SMatthew G. Knepley PetscCall(DMLabelGetValue(label, point, &val)); 1933*b6dfa339SMatthew G. Knepley PetscCheck((val == dim-1) || (val == shift2+dim-1), PETSC_COMM_SELF, PETSC_ERR_PLIB, "Point %" PetscInt_FMT " has label value %" PetscInt_FMT ", should be a fault face", point, val); 1934*b6dfa339SMatthew G. Knepley PetscCall(DMLabelClearValue(label, point, val)); 1935*b6dfa339SMatthew G. Knepley PetscCall(DMLabelSetValue(label, point, shift3+val)); 1936*b6dfa339SMatthew G. Knepley PetscCall(DMPlexGetTransitiveClosure(dm, point, PETSC_TRUE, &closureSize, &closure)); 1937*b6dfa339SMatthew G. Knepley for (cl = 0; cl < closureSize*2; cl += 2) { 1938*b6dfa339SMatthew G. Knepley const PetscInt clp = closure[cl]; 1939*b6dfa339SMatthew G. Knepley 1940*b6dfa339SMatthew G. Knepley PetscCall(DMLabelGetValue(label, clp, &val)); 1941*b6dfa339SMatthew G. Knepley PetscCheck(val != -1, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Point %" PetscInt_FMT " is missing from label, but is in the closure of a fault face", point); 1942*b6dfa339SMatthew G. Knepley PetscCall(DMLabelClearValue(label, clp, val)); 1943*b6dfa339SMatthew G. Knepley PetscCall(DMLabelSetValue(label, clp, shift3+val)); 1944*b6dfa339SMatthew G. Knepley } 1945*b6dfa339SMatthew G. Knepley PetscCall(DMPlexRestoreTransitiveClosure(dm, point, PETSC_TRUE, &closureSize, &closure)); 1946*b6dfa339SMatthew G. Knepley } 1947*b6dfa339SMatthew G. Knepley } 1948*b6dfa339SMatthew G. Knepley } 1949*b6dfa339SMatthew G. Knepley } 1950*b6dfa339SMatthew G. Knepley PetscCall(ISRestoreIndices(dimIS, &points)); 1951*b6dfa339SMatthew G. Knepley PetscCall(ISDestroy(&dimIS)); 1952*b6dfa339SMatthew G. Knepley if (subpointIS) PetscCall(ISRestoreIndices(subpointIS, &subpoints)); 1953cd0c2139SMatthew G Knepley /* Search for other cells/faces/edges connected to the fault by a vertex */ 19549566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthStratum(dm, 0, &vStart, &vEnd)); 19559566063dSJacob Faibussowitsch PetscCall(DMPlexGetSimplexOrBoxCells(dm, 0, &cStart, &cEnd)); 19569566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(label, 0, &dimIS)); 19577d2fefb6SMatthew G. Knepley /* TODO Why are we including cross edges here? Shouldn't they be in the star of boundary vertices? */ 19589566063dSJacob Faibussowitsch if (blabel) PetscCall(DMLabelGetStratumIS(blabel, 2, &crossEdgeIS)); 195986200784SMatthew G. Knepley if (dimIS && crossEdgeIS) { 196086200784SMatthew G. Knepley IS vertIS = dimIS; 196186200784SMatthew G. Knepley 19629566063dSJacob Faibussowitsch PetscCall(ISExpand(vertIS, crossEdgeIS, &dimIS)); 19639566063dSJacob Faibussowitsch PetscCall(ISDestroy(&crossEdgeIS)); 19649566063dSJacob Faibussowitsch PetscCall(ISDestroy(&vertIS)); 196586200784SMatthew G. Knepley } 1966dc86033cSMatthew G. Knepley if (!dimIS) { 1967dc86033cSMatthew G. Knepley PetscFunctionReturn(0); 1968dc86033cSMatthew G. Knepley } 19699566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(dimIS, &numPoints)); 19709566063dSJacob Faibussowitsch PetscCall(ISGetIndices(dimIS, &points)); 1971d7c8f101SMatthew G. Knepley for (p = 0; p < numPoints; ++p) { /* Loop over fault vertices */ 1972cd0c2139SMatthew G Knepley PetscInt *star = NULL; 197386200784SMatthew G. Knepley PetscInt starSize, s; 1974cd0c2139SMatthew G Knepley PetscInt again = 1; /* 0: Finished 1: Keep iterating after a change 2: No change */ 1975cd0c2139SMatthew G Knepley 1976d4622b2cSMatthew G. Knepley /* All points connected to the fault are inside a cell, so at the top level we will only check cells */ 19779566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(dm, points[p], PETSC_FALSE, &starSize, &star)); 1978cd0c2139SMatthew G Knepley while (again) { 197908401ef6SPierre Jolivet PetscCheck(again <= 1,PetscObjectComm((PetscObject)dm), PETSC_ERR_PLIB, "Could not classify all cells connected to the fault"); 1980cd0c2139SMatthew G Knepley again = 0; 1981cd0c2139SMatthew G Knepley for (s = 0; s < starSize*2; s += 2) { 1982cd0c2139SMatthew G Knepley const PetscInt point = star[s]; 1983cd0c2139SMatthew G Knepley const PetscInt *cone; 1984cd0c2139SMatthew G Knepley PetscInt coneSize, c; 1985cd0c2139SMatthew G Knepley 1986412e9a14SMatthew G. Knepley if ((point < cStart) || (point >= cEnd)) continue; 19879566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, point, &val)); 1988cd0c2139SMatthew G Knepley if (val != -1) continue; 1989d4622b2cSMatthew G. Knepley again = again == 1 ? 1 : 2; 19909566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, point, &coneSize)); 19919566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, point, &cone)); 1992cd0c2139SMatthew G Knepley for (c = 0; c < coneSize; ++c) { 19939566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, cone[c], &val)); 1994cd0c2139SMatthew G Knepley if (val != -1) { 1995d7c8f101SMatthew G. Knepley const PetscInt *ccone; 1996166d9d0cSMatthew G. Knepley PetscInt cconeSize, cc, side; 1997d7c8f101SMatthew G. Knepley 199808401ef6SPierre Jolivet PetscCheck(PetscAbs(val) >= shift,PetscObjectComm((PetscObject)dm), PETSC_ERR_PLIB, "Face %d on cell %d has an invalid label %d", cone[c], point, val); 199937a6de01SMatthew G. Knepley if (val > 0) side = 1; 200037a6de01SMatthew G. Knepley else side = -1; 20019566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(label, point, side*(shift+dim))); 2002d7c8f101SMatthew G. Knepley /* Mark cell faces which touch the fault */ 20039566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, point, &cconeSize)); 20049566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, point, &ccone)); 2005d7c8f101SMatthew G. Knepley for (cc = 0; cc < cconeSize; ++cc) { 2006d7c8f101SMatthew G. Knepley PetscInt *closure = NULL; 2007d7c8f101SMatthew G. Knepley PetscInt closureSize, cl; 2008d7c8f101SMatthew G. Knepley 20099566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, ccone[cc], &val)); 2010166d9d0cSMatthew G. Knepley if (val != -1) continue; 20119566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(dm, ccone[cc], PETSC_TRUE, &closureSize, &closure)); 2012d4622b2cSMatthew G. Knepley for (cl = 0; cl < closureSize*2; cl += 2) { 2013d7c8f101SMatthew G. Knepley const PetscInt clp = closure[cl]; 2014d7c8f101SMatthew G. Knepley 20159566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, clp, &val)); 2016d7c8f101SMatthew G. Knepley if (val == -1) continue; 20179566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(label, ccone[cc], side*(shift+dim-1))); 201837a6de01SMatthew G. Knepley break; 201937a6de01SMatthew G. Knepley } 20209566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dm, ccone[cc], PETSC_TRUE, &closureSize, &closure)); 2021cd0c2139SMatthew G Knepley } 2022cd0c2139SMatthew G Knepley again = 1; 2023cd0c2139SMatthew G Knepley break; 2024cd0c2139SMatthew G Knepley } 2025cd0c2139SMatthew G Knepley } 2026cd0c2139SMatthew G Knepley } 2027cd0c2139SMatthew G Knepley } 2028cd0c2139SMatthew G Knepley /* Classify the rest by cell membership */ 2029cd0c2139SMatthew G Knepley for (s = 0; s < starSize*2; s += 2) { 2030cd0c2139SMatthew G Knepley const PetscInt point = star[s]; 2031cd0c2139SMatthew G Knepley 20329566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, point, &val)); 2033cd0c2139SMatthew G Knepley if (val == -1) { 2034cd0c2139SMatthew G Knepley PetscInt *sstar = NULL; 2035cd0c2139SMatthew G Knepley PetscInt sstarSize, ss; 2036412e9a14SMatthew G. Knepley PetscBool marked = PETSC_FALSE, isHybrid; 2037cd0c2139SMatthew G Knepley 20389566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(dm, point, PETSC_FALSE, &sstarSize, &sstar)); 2039cd0c2139SMatthew G Knepley for (ss = 0; ss < sstarSize*2; ss += 2) { 2040cd0c2139SMatthew G Knepley const PetscInt spoint = sstar[ss]; 2041cd0c2139SMatthew G Knepley 2042412e9a14SMatthew G. Knepley if ((spoint < cStart) || (spoint >= cEnd)) continue; 20439566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, spoint, &val)); 204408401ef6SPierre Jolivet PetscCheck(val != -1,PetscObjectComm((PetscObject)dm), PETSC_ERR_PLIB, "Cell %d in star of %d does not have a valid label", spoint, point); 20459566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(depthLabel, point, &dep)); 2046cd0c2139SMatthew G Knepley if (val > 0) { 20479566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(label, point, shift+dep)); 2048cd0c2139SMatthew G Knepley } else { 20499566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(label, point, -(shift+dep))); 2050cd0c2139SMatthew G Knepley } 2051cd0c2139SMatthew G Knepley marked = PETSC_TRUE; 2052cd0c2139SMatthew G Knepley break; 2053cd0c2139SMatthew G Knepley } 20549566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dm, point, PETSC_FALSE, &sstarSize, &sstar)); 20559566063dSJacob Faibussowitsch PetscCall(DMPlexCellIsHybrid_Internal(dm, point, &isHybrid)); 205608401ef6SPierre Jolivet PetscCheck(isHybrid || marked,PetscObjectComm((PetscObject)dm), PETSC_ERR_PLIB, "Point %d could not be classified", point); 2057cd0c2139SMatthew G Knepley } 2058cd0c2139SMatthew G Knepley } 20599566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dm, points[p], PETSC_FALSE, &starSize, &star)); 2060cd0c2139SMatthew G Knepley } 20619566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(dimIS, &points)); 20629566063dSJacob Faibussowitsch PetscCall(ISDestroy(&dimIS)); 20637d2fefb6SMatthew G. Knepley /* If any faces touching the fault divide cells on either side, split them 20647d2fefb6SMatthew G. Knepley This only occurs without a surface boundary */ 20659566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(label, shift+dim-1, &facePosIS)); 20669566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(label, -(shift+dim-1), &faceNegIS)); 20679566063dSJacob Faibussowitsch PetscCall(ISExpand(facePosIS, faceNegIS, &dimIS)); 20689566063dSJacob Faibussowitsch PetscCall(ISDestroy(&facePosIS)); 20699566063dSJacob Faibussowitsch PetscCall(ISDestroy(&faceNegIS)); 20709566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(dimIS, &numPoints)); 20719566063dSJacob Faibussowitsch PetscCall(ISGetIndices(dimIS, &points)); 207218c5995bSMatthew G. Knepley for (p = 0; p < numPoints; ++p) { 207318c5995bSMatthew G. Knepley const PetscInt point = points[p]; 207418c5995bSMatthew G. Knepley const PetscInt *support; 207518c5995bSMatthew G. Knepley PetscInt supportSize, valA, valB; 207618c5995bSMatthew G. Knepley 20779566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dm, point, &supportSize)); 207818c5995bSMatthew G. Knepley if (supportSize != 2) continue; 20799566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(dm, point, &support)); 20809566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, support[0], &valA)); 20819566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, support[1], &valB)); 208218c5995bSMatthew G. Knepley if ((valA == -1) || (valB == -1)) continue; 208318c5995bSMatthew G. Knepley if (valA*valB > 0) continue; 208418c5995bSMatthew G. Knepley /* Split the face */ 20859566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, point, &valA)); 20869566063dSJacob Faibussowitsch PetscCall(DMLabelClearValue(label, point, valA)); 20879566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(label, point, dim-1)); 2088e1757548SMatthew G. Knepley /* Label its closure: 2089e1757548SMatthew G. Knepley unmarked: label as unsplit 2090e1757548SMatthew G. Knepley incident: relabel as split 2091e1757548SMatthew G. Knepley split: do nothing 2092e1757548SMatthew G. Knepley */ 209318c5995bSMatthew G. Knepley { 209418c5995bSMatthew G. Knepley PetscInt *closure = NULL; 209518c5995bSMatthew G. Knepley PetscInt closureSize, cl; 209618c5995bSMatthew G. Knepley 20979566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(dm, point, PETSC_TRUE, &closureSize, &closure)); 209818c5995bSMatthew G. Knepley for (cl = 0; cl < closureSize*2; cl += 2) { 20999566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, closure[cl], &valA)); 21008771c1d3SMatthew G. Knepley if (valA == -1) { /* Mark as unsplit */ 21019566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(depthLabel, closure[cl], &dep)); 21029566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(label, closure[cl], shift2+dep)); 21038771c1d3SMatthew G. Knepley } else if (((valA >= shift) && (valA < shift2)) || ((valA <= -shift) && (valA > -shift2))) { 21049566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(depthLabel, closure[cl], &dep)); 21059566063dSJacob Faibussowitsch PetscCall(DMLabelClearValue(label, closure[cl], valA)); 21069566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(label, closure[cl], dep)); 2107e1757548SMatthew G. Knepley } 210818c5995bSMatthew G. Knepley } 21099566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dm, point, PETSC_TRUE, &closureSize, &closure)); 211018c5995bSMatthew G. Knepley } 211118c5995bSMatthew G. Knepley } 21129566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(dimIS, &points)); 21139566063dSJacob Faibussowitsch PetscCall(ISDestroy(&dimIS)); 2114cd0c2139SMatthew G Knepley PetscFunctionReturn(0); 2115cd0c2139SMatthew G Knepley } 2116cd0c2139SMatthew G Knepley 2117720e594eSMatthew G. Knepley /* Check that no cell have all vertices on the fault */ 2118720e594eSMatthew G. Knepley PetscErrorCode DMPlexCheckValidSubmesh_Private(DM dm, DMLabel label, DM subdm) 2119720e594eSMatthew G. Knepley { 2120720e594eSMatthew G. Knepley IS subpointIS; 2121720e594eSMatthew G. Knepley const PetscInt *dmpoints; 2122720e594eSMatthew G. Knepley PetscInt defaultValue, cStart, cEnd, c, vStart, vEnd; 2123720e594eSMatthew G. Knepley 2124720e594eSMatthew G. Knepley PetscFunctionBegin; 2125720e594eSMatthew G. Knepley if (!label) PetscFunctionReturn(0); 21269566063dSJacob Faibussowitsch PetscCall(DMLabelGetDefaultValue(label, &defaultValue)); 21279566063dSJacob Faibussowitsch PetscCall(DMPlexGetSubpointIS(subdm, &subpointIS)); 2128720e594eSMatthew G. Knepley if (!subpointIS) PetscFunctionReturn(0); 21299566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(subdm, 0, &cStart, &cEnd)); 21309566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthStratum(dm, 0, &vStart, &vEnd)); 21319566063dSJacob Faibussowitsch PetscCall(ISGetIndices(subpointIS, &dmpoints)); 2132720e594eSMatthew G. Knepley for (c = cStart; c < cEnd; ++c) { 2133720e594eSMatthew G. Knepley PetscBool invalidCell = PETSC_TRUE; 2134720e594eSMatthew G. Knepley PetscInt *closure = NULL; 2135720e594eSMatthew G. Knepley PetscInt closureSize, cl; 2136720e594eSMatthew G. Knepley 21379566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(dm, dmpoints[c], PETSC_TRUE, &closureSize, &closure)); 2138720e594eSMatthew G. Knepley for (cl = 0; cl < closureSize*2; cl += 2) { 2139720e594eSMatthew G. Knepley PetscInt value = 0; 2140720e594eSMatthew G. Knepley 2141720e594eSMatthew G. Knepley if ((closure[cl] < vStart) || (closure[cl] >= vEnd)) continue; 21429566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, closure[cl], &value)); 2143720e594eSMatthew G. Knepley if (value == defaultValue) {invalidCell = PETSC_FALSE; break;} 2144720e594eSMatthew G. Knepley } 21459566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dm, dmpoints[c], PETSC_TRUE, &closureSize, &closure)); 2146720e594eSMatthew G. Knepley if (invalidCell) { 21479566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(subpointIS, &dmpoints)); 21489566063dSJacob Faibussowitsch PetscCall(ISDestroy(&subpointIS)); 21499566063dSJacob Faibussowitsch PetscCall(DMDestroy(&subdm)); 215098921bdaSJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Ambiguous submesh. Cell %D has all of its vertices on the submesh.", dmpoints[c]); 2151720e594eSMatthew G. Knepley } 2152720e594eSMatthew G. Knepley } 21539566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(subpointIS, &dmpoints)); 2154720e594eSMatthew G. Knepley PetscFunctionReturn(0); 2155720e594eSMatthew G. Knepley } 2156720e594eSMatthew G. Knepley 2157c08575a3SMatthew G. Knepley /*@ 21583cf72582SMatthew G. Knepley DMPlexCreateHybridMesh - Create a mesh with hybrid cells along an internal interface 21593cf72582SMatthew G. Knepley 21603cf72582SMatthew G. Knepley Collective on dm 21613cf72582SMatthew G. Knepley 21623cf72582SMatthew G. Knepley Input Parameters: 21633cf72582SMatthew G. Knepley + dm - The original DM 2164720e594eSMatthew G. Knepley . label - The label specifying the interface vertices 2165720e594eSMatthew G. Knepley - bdlabel - The optional label specifying the interface boundary vertices 21663cf72582SMatthew G. Knepley 21673cf72582SMatthew G. Knepley Output Parameters: 21687db7e0a7SMatthew G. Knepley + hybridLabel - The label fully marking the interface, or NULL if no output is desired 21697db7e0a7SMatthew G. Knepley . splitLabel - The label containing the split points, or NULL if no output is desired 2170720e594eSMatthew G. Knepley . dmInterface - The new interface DM, or NULL 2171720e594eSMatthew G. Knepley - dmHybrid - The new DM with cohesive cells 21723cf72582SMatthew G. Knepley 21736eccb800SMatthew Knepley Note: The hybridLabel indicates what parts of the original mesh impinged on the on division surface. For points 21746eccb800SMatthew Knepley directly on the division surface, they are labeled with their dimension, so an edge 7 on the division surface would be 21756eccb800SMatthew Knepley 7 (1) in hybridLabel. For points that impinge from the positive side, they are labeled with 100+dim, so an edge 6 with 21766eccb800SMatthew Knepley one vertex 3 on the surface would be 6 (101) and 3 (0) in hybridLabel. If an edge 9 from the negative side of the 21776eccb800SMatthew Knepley surface also hits vertex 3, it would be 9 (-101) in hybridLabel. 21786eccb800SMatthew Knepley 21796eccb800SMatthew Knepley The splitLabel indicates what points in the new hybrid mesh were the result of splitting points in the original 21806eccb800SMatthew Knepley mesh. The label value is +=100+dim for each point. For example, if two edges 10 and 14 in the hybrid resulting from 21816eccb800SMatthew Knepley splitting an edge in the original mesh, you would have 10 (101) and 14 (-101) in the splitLabel. 21826eccb800SMatthew Knepley 21836eccb800SMatthew Knepley The dmInterface is a DM built from the original division surface. It has a label which can be retrieved using 21846eccb800SMatthew Knepley DMPlexGetSubpointMap() which maps each point back to the point in the surface of the original mesh. 21856eccb800SMatthew Knepley 21863cf72582SMatthew G. Knepley Level: developer 21873cf72582SMatthew G. Knepley 21886eccb800SMatthew Knepley .seealso: DMPlexConstructCohesiveCells(), DMPlexLabelCohesiveComplete(), DMPlexGetSubpointMap(), DMCreate() 21893cf72582SMatthew G. Knepley @*/ 21907db7e0a7SMatthew G. Knepley PetscErrorCode DMPlexCreateHybridMesh(DM dm, DMLabel label, DMLabel bdlabel, DMLabel *hybridLabel, DMLabel *splitLabel, DM *dmInterface, DM *dmHybrid) 21913cf72582SMatthew G. Knepley { 21923cf72582SMatthew G. Knepley DM idm; 21937db7e0a7SMatthew G. Knepley DMLabel subpointMap, hlabel, slabel = NULL; 21943cf72582SMatthew G. Knepley PetscInt dim; 21953cf72582SMatthew G. Knepley 21963cf72582SMatthew G. Knepley PetscFunctionBegin; 21973cf72582SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 2198720e594eSMatthew G. Knepley if (bdlabel) PetscValidPointer(bdlabel, 3); 2199720e594eSMatthew G. Knepley if (hybridLabel) PetscValidPointer(hybridLabel, 4); 22007db7e0a7SMatthew G. Knepley if (splitLabel) PetscValidPointer(splitLabel, 5); 22017db7e0a7SMatthew G. Knepley if (dmInterface) PetscValidPointer(dmInterface, 6); 22027db7e0a7SMatthew G. Knepley PetscValidPointer(dmHybrid, 7); 22039566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 22049566063dSJacob Faibussowitsch PetscCall(DMPlexCreateSubmesh(dm, label, 1, PETSC_FALSE, &idm)); 22059566063dSJacob Faibussowitsch PetscCall(DMPlexCheckValidSubmesh_Private(dm, label, idm)); 22069566063dSJacob Faibussowitsch PetscCall(DMPlexOrient(idm)); 22079566063dSJacob Faibussowitsch PetscCall(DMPlexGetSubpointMap(idm, &subpointMap)); 22089566063dSJacob Faibussowitsch PetscCall(DMLabelDuplicate(subpointMap, &hlabel)); 22099566063dSJacob Faibussowitsch PetscCall(DMLabelClearStratum(hlabel, dim)); 22107db7e0a7SMatthew G. Knepley if (splitLabel) { 22117db7e0a7SMatthew G. Knepley const char *name; 22127db7e0a7SMatthew G. Knepley char sname[PETSC_MAX_PATH_LEN]; 22137db7e0a7SMatthew G. Knepley 22149566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject) hlabel, &name)); 22159566063dSJacob Faibussowitsch PetscCall(PetscStrncpy(sname, name, PETSC_MAX_PATH_LEN)); 22169566063dSJacob Faibussowitsch PetscCall(PetscStrcat(sname, " split")); 22179566063dSJacob Faibussowitsch PetscCall(DMLabelCreate(PETSC_COMM_SELF, sname, &slabel)); 22187db7e0a7SMatthew G. Knepley } 22199566063dSJacob Faibussowitsch PetscCall(DMPlexLabelCohesiveComplete(dm, hlabel, bdlabel, PETSC_FALSE, idm)); 2220720e594eSMatthew G. Knepley if (dmInterface) {*dmInterface = idm;} 22219566063dSJacob Faibussowitsch else PetscCall(DMDestroy(&idm)); 22229566063dSJacob Faibussowitsch PetscCall(DMPlexConstructCohesiveCells(dm, hlabel, slabel, dmHybrid)); 22239566063dSJacob Faibussowitsch PetscCall(DMPlexCopy_Internal(dm, PETSC_TRUE, *dmHybrid)); 22243cf72582SMatthew G. Knepley if (hybridLabel) *hybridLabel = hlabel; 22259566063dSJacob Faibussowitsch else PetscCall(DMLabelDestroy(&hlabel)); 22267db7e0a7SMatthew G. Knepley if (splitLabel) *splitLabel = slabel; 22274a7ee7d0SMatthew G. Knepley { 22284a7ee7d0SMatthew G. Knepley DM cdm; 22294a7ee7d0SMatthew G. Knepley DMLabel ctLabel; 22304a7ee7d0SMatthew G. Knepley 22314a7ee7d0SMatthew G. Knepley /* We need to somehow share the celltype label with the coordinate dm */ 22329566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDM(*dmHybrid, &cdm)); 22339566063dSJacob Faibussowitsch PetscCall(DMPlexGetCellTypeLabel(*dmHybrid, &ctLabel)); 22349566063dSJacob Faibussowitsch PetscCall(DMSetLabel(cdm, ctLabel)); 22354a7ee7d0SMatthew G. Knepley } 2236cd0c2139SMatthew G Knepley PetscFunctionReturn(0); 2237cd0c2139SMatthew G Knepley } 2238cd0c2139SMatthew G Knepley 2239efa14ee0SMatthew G Knepley /* Here we need the explicit assumption that: 2240efa14ee0SMatthew G Knepley 2241efa14ee0SMatthew G Knepley For any marked cell, the marked vertices constitute a single face 2242efa14ee0SMatthew G Knepley */ 2243830e53efSMatthew G. Knepley static PetscErrorCode DMPlexMarkSubmesh_Uninterpolated(DM dm, DMLabel vertexLabel, PetscInt value, DMLabel subpointMap, PetscInt *numFaces, PetscInt *nFV, DM subdm) 2244efa14ee0SMatthew G Knepley { 2245fed694aaSMatthew G. Knepley IS subvertexIS = NULL; 2246efa14ee0SMatthew G Knepley const PetscInt *subvertices; 2247412e9a14SMatthew G. Knepley PetscInt *pStart, *pEnd, pSize; 2248efa14ee0SMatthew G Knepley PetscInt depth, dim, d, numSubVerticesInitial = 0, v; 2249efa14ee0SMatthew G Knepley 2250efa14ee0SMatthew G Knepley PetscFunctionBegin; 2251efa14ee0SMatthew G Knepley *numFaces = 0; 2252efa14ee0SMatthew G Knepley *nFV = 0; 22539566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepth(dm, &depth)); 22549566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 225577d178adSMatthew G. Knepley pSize = PetscMax(depth, dim) + 1; 22569566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(pSize, &pStart, pSize, &pEnd)); 2257efa14ee0SMatthew G Knepley for (d = 0; d <= depth; ++d) { 22589566063dSJacob Faibussowitsch PetscCall(DMPlexGetSimplexOrBoxCells(dm, depth-d, &pStart[d], &pEnd[d])); 2259efa14ee0SMatthew G Knepley } 2260efa14ee0SMatthew G Knepley /* Loop over initial vertices and mark all faces in the collective star() */ 22619566063dSJacob Faibussowitsch if (vertexLabel) PetscCall(DMLabelGetStratumIS(vertexLabel, value, &subvertexIS)); 2262efa14ee0SMatthew G Knepley if (subvertexIS) { 22639566063dSJacob Faibussowitsch PetscCall(ISGetSize(subvertexIS, &numSubVerticesInitial)); 22649566063dSJacob Faibussowitsch PetscCall(ISGetIndices(subvertexIS, &subvertices)); 2265efa14ee0SMatthew G Knepley } 2266efa14ee0SMatthew G Knepley for (v = 0; v < numSubVerticesInitial; ++v) { 2267efa14ee0SMatthew G Knepley const PetscInt vertex = subvertices[v]; 22680298fd71SBarry Smith PetscInt *star = NULL; 2269efa14ee0SMatthew G Knepley PetscInt starSize, s, numCells = 0, c; 2270efa14ee0SMatthew G Knepley 22719566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(dm, vertex, PETSC_FALSE, &starSize, &star)); 2272efa14ee0SMatthew G Knepley for (s = 0; s < starSize*2; s += 2) { 2273efa14ee0SMatthew G Knepley const PetscInt point = star[s]; 2274efa14ee0SMatthew G Knepley if ((point >= pStart[depth]) && (point < pEnd[depth])) star[numCells++] = point; 2275efa14ee0SMatthew G Knepley } 2276efa14ee0SMatthew G Knepley for (c = 0; c < numCells; ++c) { 2277efa14ee0SMatthew G Knepley const PetscInt cell = star[c]; 22780298fd71SBarry Smith PetscInt *closure = NULL; 2279efa14ee0SMatthew G Knepley PetscInt closureSize, cl; 2280efa14ee0SMatthew G Knepley PetscInt cellLoc, numCorners = 0, faceSize = 0; 2281efa14ee0SMatthew G Knepley 22829566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(subpointMap, cell, &cellLoc)); 228365560c7fSMatthew G Knepley if (cellLoc == 2) continue; 228408401ef6SPierre Jolivet PetscCheck(cellLoc < 0,PetscObjectComm((PetscObject)dm), PETSC_ERR_PLIB, "Cell %d has dimension %d in the surface label", cell, cellLoc); 22859566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(dm, cell, PETSC_TRUE, &closureSize, &closure)); 2286efa14ee0SMatthew G Knepley for (cl = 0; cl < closureSize*2; cl += 2) { 2287efa14ee0SMatthew G Knepley const PetscInt point = closure[cl]; 2288efa14ee0SMatthew G Knepley PetscInt vertexLoc; 2289efa14ee0SMatthew G Knepley 2290efa14ee0SMatthew G Knepley if ((point >= pStart[0]) && (point < pEnd[0])) { 2291efa14ee0SMatthew G Knepley ++numCorners; 22929566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(vertexLabel, point, &vertexLoc)); 2293830e53efSMatthew G. Knepley if (vertexLoc == value) closure[faceSize++] = point; 2294efa14ee0SMatthew G Knepley } 2295efa14ee0SMatthew G Knepley } 22969566063dSJacob Faibussowitsch if (!(*nFV)) PetscCall(DMPlexGetNumFaceVertices(dm, dim, numCorners, nFV)); 229708401ef6SPierre Jolivet PetscCheck(faceSize <= *nFV,PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Invalid submesh: Too many vertices %d of an element on the surface", faceSize); 2298efa14ee0SMatthew G Knepley if (faceSize == *nFV) { 2299007baee2SMatthew G. Knepley const PetscInt *cells = NULL; 2300007baee2SMatthew G. Knepley PetscInt numCells, nc; 2301007baee2SMatthew G. Knepley 2302efa14ee0SMatthew G Knepley ++(*numFaces); 2303efa14ee0SMatthew G Knepley for (cl = 0; cl < faceSize; ++cl) { 23049566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(subpointMap, closure[cl], 0)); 2305efa14ee0SMatthew G Knepley } 23069566063dSJacob Faibussowitsch PetscCall(DMPlexGetJoin(dm, faceSize, closure, &numCells, &cells)); 2307007baee2SMatthew G. Knepley for (nc = 0; nc < numCells; ++nc) { 23089566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(subpointMap, cells[nc], 2)); 2309007baee2SMatthew G. Knepley } 23109566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreJoin(dm, faceSize, closure, &numCells, &cells)); 2311efa14ee0SMatthew G Knepley } 23129566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dm, cell, PETSC_TRUE, &closureSize, &closure)); 2313efa14ee0SMatthew G Knepley } 23149566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dm, vertex, PETSC_FALSE, &starSize, &star)); 2315efa14ee0SMatthew G Knepley } 2316efa14ee0SMatthew G Knepley if (subvertexIS) { 23179566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(subvertexIS, &subvertices)); 2318efa14ee0SMatthew G Knepley } 23199566063dSJacob Faibussowitsch PetscCall(ISDestroy(&subvertexIS)); 23209566063dSJacob Faibussowitsch PetscCall(PetscFree2(pStart, pEnd)); 2321efa14ee0SMatthew G Knepley PetscFunctionReturn(0); 2322efa14ee0SMatthew G Knepley } 2323efa14ee0SMatthew G Knepley 2324158acfadSMatthew G. Knepley static PetscErrorCode DMPlexMarkSubmesh_Interpolated(DM dm, DMLabel vertexLabel, PetscInt value, PetscBool markedFaces, DMLabel subpointMap, DM subdm) 2325efa14ee0SMatthew G Knepley { 232634b4c39eSMatthew G. Knepley IS subvertexIS = NULL; 2327efa14ee0SMatthew G Knepley const PetscInt *subvertices; 2328412e9a14SMatthew G. Knepley PetscInt *pStart, *pEnd; 2329efa14ee0SMatthew G Knepley PetscInt dim, d, numSubVerticesInitial = 0, v; 2330efa14ee0SMatthew G Knepley 2331efa14ee0SMatthew G Knepley PetscFunctionBegin; 23329566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 23339566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(dim+1, &pStart, dim+1, &pEnd)); 2334efa14ee0SMatthew G Knepley for (d = 0; d <= dim; ++d) { 23359566063dSJacob Faibussowitsch PetscCall(DMPlexGetSimplexOrBoxCells(dm, dim-d, &pStart[d], &pEnd[d])); 2336efa14ee0SMatthew G Knepley } 2337efa14ee0SMatthew G Knepley /* Loop over initial vertices and mark all faces in the collective star() */ 233834b4c39eSMatthew G. Knepley if (vertexLabel) { 23399566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(vertexLabel, value, &subvertexIS)); 2340efa14ee0SMatthew G Knepley if (subvertexIS) { 23419566063dSJacob Faibussowitsch PetscCall(ISGetSize(subvertexIS, &numSubVerticesInitial)); 23429566063dSJacob Faibussowitsch PetscCall(ISGetIndices(subvertexIS, &subvertices)); 2343efa14ee0SMatthew G Knepley } 234434b4c39eSMatthew G. Knepley } 2345efa14ee0SMatthew G Knepley for (v = 0; v < numSubVerticesInitial; ++v) { 2346efa14ee0SMatthew G Knepley const PetscInt vertex = subvertices[v]; 23470298fd71SBarry Smith PetscInt *star = NULL; 2348efa14ee0SMatthew G Knepley PetscInt starSize, s, numFaces = 0, f; 2349efa14ee0SMatthew G Knepley 23509566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(dm, vertex, PETSC_FALSE, &starSize, &star)); 2351efa14ee0SMatthew G Knepley for (s = 0; s < starSize*2; s += 2) { 2352efa14ee0SMatthew G Knepley const PetscInt point = star[s]; 2353158acfadSMatthew G. Knepley PetscInt faceLoc; 2354158acfadSMatthew G. Knepley 2355158acfadSMatthew G. Knepley if ((point >= pStart[dim-1]) && (point < pEnd[dim-1])) { 2356158acfadSMatthew G. Knepley if (markedFaces) { 23579566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(vertexLabel, point, &faceLoc)); 2358158acfadSMatthew G. Knepley if (faceLoc < 0) continue; 2359158acfadSMatthew G. Knepley } 2360158acfadSMatthew G. Knepley star[numFaces++] = point; 2361158acfadSMatthew G. Knepley } 2362efa14ee0SMatthew G Knepley } 2363efa14ee0SMatthew G Knepley for (f = 0; f < numFaces; ++f) { 2364efa14ee0SMatthew G Knepley const PetscInt face = star[f]; 23650298fd71SBarry Smith PetscInt *closure = NULL; 2366efa14ee0SMatthew G Knepley PetscInt closureSize, c; 2367efa14ee0SMatthew G Knepley PetscInt faceLoc; 2368efa14ee0SMatthew G Knepley 23699566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(subpointMap, face, &faceLoc)); 2370efa14ee0SMatthew G Knepley if (faceLoc == dim-1) continue; 237108401ef6SPierre Jolivet PetscCheck(faceLoc < 0,PetscObjectComm((PetscObject)dm), PETSC_ERR_PLIB, "Face %d has dimension %d in the surface label", face, faceLoc); 23729566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(dm, face, PETSC_TRUE, &closureSize, &closure)); 2373efa14ee0SMatthew G Knepley for (c = 0; c < closureSize*2; c += 2) { 2374efa14ee0SMatthew G Knepley const PetscInt point = closure[c]; 2375efa14ee0SMatthew G Knepley PetscInt vertexLoc; 2376efa14ee0SMatthew G Knepley 2377efa14ee0SMatthew G Knepley if ((point >= pStart[0]) && (point < pEnd[0])) { 23789566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(vertexLabel, point, &vertexLoc)); 2379830e53efSMatthew G. Knepley if (vertexLoc != value) break; 2380efa14ee0SMatthew G Knepley } 2381efa14ee0SMatthew G Knepley } 2382efa14ee0SMatthew G Knepley if (c == closureSize*2) { 2383efa14ee0SMatthew G Knepley const PetscInt *support; 2384efa14ee0SMatthew G Knepley PetscInt supportSize, s; 2385efa14ee0SMatthew G Knepley 2386efa14ee0SMatthew G Knepley for (c = 0; c < closureSize*2; c += 2) { 2387efa14ee0SMatthew G Knepley const PetscInt point = closure[c]; 2388efa14ee0SMatthew G Knepley 2389efa14ee0SMatthew G Knepley for (d = 0; d < dim; ++d) { 2390efa14ee0SMatthew G Knepley if ((point >= pStart[d]) && (point < pEnd[d])) { 23919566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(subpointMap, point, d)); 2392efa14ee0SMatthew G Knepley break; 2393efa14ee0SMatthew G Knepley } 2394efa14ee0SMatthew G Knepley } 2395efa14ee0SMatthew G Knepley } 23969566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dm, face, &supportSize)); 23979566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(dm, face, &support)); 2398efa14ee0SMatthew G Knepley for (s = 0; s < supportSize; ++s) { 23999566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(subpointMap, support[s], dim)); 2400efa14ee0SMatthew G Knepley } 2401efa14ee0SMatthew G Knepley } 24029566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dm, face, PETSC_TRUE, &closureSize, &closure)); 2403efa14ee0SMatthew G Knepley } 24049566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dm, vertex, PETSC_FALSE, &starSize, &star)); 2405efa14ee0SMatthew G Knepley } 24069566063dSJacob Faibussowitsch if (subvertexIS) PetscCall(ISRestoreIndices(subvertexIS, &subvertices)); 24079566063dSJacob Faibussowitsch PetscCall(ISDestroy(&subvertexIS)); 24089566063dSJacob Faibussowitsch PetscCall(PetscFree2(pStart, pEnd)); 2409efa14ee0SMatthew G Knepley PetscFunctionReturn(0); 2410efa14ee0SMatthew G Knepley } 2411efa14ee0SMatthew G Knepley 241227c04023SMatthew G. Knepley static PetscErrorCode DMPlexMarkCohesiveSubmesh_Uninterpolated(DM dm, PetscBool hasLagrange, const char labelname[], PetscInt value, DMLabel subpointMap, PetscInt *numFaces, PetscInt *nFV, PetscInt *subCells[], DM subdm) 2413766ab985SMatthew G. Knepley { 241427c04023SMatthew G. Knepley DMLabel label = NULL; 2415766ab985SMatthew G. Knepley const PetscInt *cone; 24169fc93327SToby Isaac PetscInt dim, cMax, cEnd, c, subc = 0, p, coneSize = -1; 2417766ab985SMatthew G. Knepley 2418812bfc34SJed Brown PetscFunctionBegin; 2419c0ed958bSJed Brown *numFaces = 0; 2420c0ed958bSJed Brown *nFV = 0; 24219566063dSJacob Faibussowitsch if (labelname) PetscCall(DMGetLabel(dm, labelname, &label)); 2422fed694aaSMatthew G. Knepley *subCells = NULL; 24239566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 24249566063dSJacob Faibussowitsch PetscCall(DMPlexGetTensorPrismBounds_Internal(dm, dim, &cMax, &cEnd)); 2425766ab985SMatthew G. Knepley if (cMax < 0) PetscFunctionReturn(0); 242627c04023SMatthew G. Knepley if (label) { 242727c04023SMatthew G. Knepley for (c = cMax; c < cEnd; ++c) { 242827c04023SMatthew G. Knepley PetscInt val; 242927c04023SMatthew G. Knepley 24309566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, c, &val)); 243127c04023SMatthew G. Knepley if (val == value) { 243227c04023SMatthew G. Knepley ++(*numFaces); 24339566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, c, &coneSize)); 243427c04023SMatthew G. Knepley } 243527c04023SMatthew G. Knepley } 243627c04023SMatthew G. Knepley } else { 2437766ab985SMatthew G. Knepley *numFaces = cEnd - cMax; 24389566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, cMax, &coneSize)); 243927c04023SMatthew G. Knepley } 24409566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(*numFaces *2, subCells)); 24419fc93327SToby Isaac if (!(*numFaces)) PetscFunctionReturn(0); 24429fc93327SToby Isaac *nFV = hasLagrange ? coneSize/3 : coneSize/2; 2443766ab985SMatthew G. Knepley for (c = cMax; c < cEnd; ++c) { 2444766ab985SMatthew G. Knepley const PetscInt *cells; 2445766ab985SMatthew G. Knepley PetscInt numCells; 2446766ab985SMatthew G. Knepley 244727c04023SMatthew G. Knepley if (label) { 244827c04023SMatthew G. Knepley PetscInt val; 244927c04023SMatthew G. Knepley 24509566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, c, &val)); 245127c04023SMatthew G. Knepley if (val != value) continue; 245227c04023SMatthew G. Knepley } 24539566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, c, &cone)); 2454766ab985SMatthew G. Knepley for (p = 0; p < *nFV; ++p) { 24559566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(subpointMap, cone[p], 0)); 2456766ab985SMatthew G. Knepley } 2457766ab985SMatthew G. Knepley /* Negative face */ 24589566063dSJacob Faibussowitsch PetscCall(DMPlexGetJoin(dm, *nFV, cone, &numCells, &cells)); 245927234c99SMatthew G. Knepley /* Not true in parallel 246008401ef6SPierre Jolivet PetscCheck(numCells == 2,PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Cohesive cells should separate two cells"); */ 2461766ab985SMatthew G. Knepley for (p = 0; p < numCells; ++p) { 24629566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(subpointMap, cells[p], 2)); 246327234c99SMatthew G. Knepley (*subCells)[subc++] = cells[p]; 2464766ab985SMatthew G. Knepley } 24659566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreJoin(dm, *nFV, cone, &numCells, &cells)); 2466766ab985SMatthew G. Knepley /* Positive face is not included */ 2467766ab985SMatthew G. Knepley } 2468766ab985SMatthew G. Knepley PetscFunctionReturn(0); 2469766ab985SMatthew G. Knepley } 2470766ab985SMatthew G. Knepley 24713982b651SMatthew G. Knepley static PetscErrorCode DMPlexMarkCohesiveSubmesh_Interpolated(DM dm, DMLabel label, PetscInt value, DMLabel subpointMap, DM subdm) 2472766ab985SMatthew G. Knepley { 2473766ab985SMatthew G. Knepley PetscInt *pStart, *pEnd; 2474766ab985SMatthew G. Knepley PetscInt dim, cMax, cEnd, c, d; 2475766ab985SMatthew G. Knepley 2476812bfc34SJed Brown PetscFunctionBegin; 24779566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 24789566063dSJacob Faibussowitsch PetscCall(DMPlexGetTensorPrismBounds_Internal(dm, dim, &cMax, &cEnd)); 2479766ab985SMatthew G. Knepley if (cMax < 0) PetscFunctionReturn(0); 24809566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(dim+1,&pStart,dim+1,&pEnd)); 24819566063dSJacob Faibussowitsch for (d = 0; d <= dim; ++d) PetscCall(DMPlexGetDepthStratum(dm, d, &pStart[d], &pEnd[d])); 2482766ab985SMatthew G. Knepley for (c = cMax; c < cEnd; ++c) { 2483766ab985SMatthew G. Knepley const PetscInt *cone; 2484766ab985SMatthew G. Knepley PetscInt *closure = NULL; 2485b3154360SMatthew G. Knepley PetscInt fconeSize, coneSize, closureSize, cl, val; 2486766ab985SMatthew G. Knepley 248727c04023SMatthew G. Knepley if (label) { 24889566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, c, &val)); 248927c04023SMatthew G. Knepley if (val != value) continue; 249027c04023SMatthew G. Knepley } 24919566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, c, &coneSize)); 24929566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, c, &cone)); 24939566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, cone[0], &fconeSize)); 24942c71b3e2SJacob Faibussowitsch PetscCheckFalse(coneSize != (fconeSize ? fconeSize : 1) + 2,PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Cohesive cells should separate two cells"); 2495b3154360SMatthew G. Knepley /* Negative face */ 24969566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(dm, cone[0], PETSC_TRUE, &closureSize, &closure)); 2497766ab985SMatthew G. Knepley for (cl = 0; cl < closureSize*2; cl += 2) { 2498766ab985SMatthew G. Knepley const PetscInt point = closure[cl]; 2499766ab985SMatthew G. Knepley 2500766ab985SMatthew G. Knepley for (d = 0; d <= dim; ++d) { 2501766ab985SMatthew G. Knepley if ((point >= pStart[d]) && (point < pEnd[d])) { 25029566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(subpointMap, point, d)); 2503766ab985SMatthew G. Knepley break; 2504766ab985SMatthew G. Knepley } 2505766ab985SMatthew G. Knepley } 2506766ab985SMatthew G. Knepley } 25079566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dm, cone[0], PETSC_TRUE, &closureSize, &closure)); 2508766ab985SMatthew G. Knepley /* Cells -- positive face is not included */ 2509766ab985SMatthew G. Knepley for (cl = 0; cl < 1; ++cl) { 2510766ab985SMatthew G. Knepley const PetscInt *support; 2511766ab985SMatthew G. Knepley PetscInt supportSize, s; 2512766ab985SMatthew G. Knepley 25139566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dm, cone[cl], &supportSize)); 251408401ef6SPierre Jolivet /* PetscCheck(supportSize == 2,PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Cohesive faces should separate two cells"); */ 25159566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(dm, cone[cl], &support)); 2516766ab985SMatthew G. Knepley for (s = 0; s < supportSize; ++s) { 25179566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(subpointMap, support[s], dim)); 2518766ab985SMatthew G. Knepley } 2519766ab985SMatthew G. Knepley } 2520766ab985SMatthew G. Knepley } 25219566063dSJacob Faibussowitsch PetscCall(PetscFree2(pStart, pEnd)); 2522766ab985SMatthew G. Knepley PetscFunctionReturn(0); 2523766ab985SMatthew G. Knepley } 2524766ab985SMatthew G. Knepley 2525c08575a3SMatthew G. Knepley static PetscErrorCode DMPlexGetFaceOrientation(DM dm, PetscInt cell, PetscInt numCorners, PetscInt indices[], PetscInt oppositeVertex, PetscInt origVertices[], PetscInt faceVertices[], PetscBool *posOriented) 2526e6ccafaeSMatthew G Knepley { 252782f516ccSBarry Smith MPI_Comm comm; 2528e6ccafaeSMatthew G Knepley PetscBool posOrient = PETSC_FALSE; 2529e6ccafaeSMatthew G Knepley const PetscInt debug = 0; 2530e6ccafaeSMatthew G Knepley PetscInt cellDim, faceSize, f; 2531e6ccafaeSMatthew G Knepley 253282f516ccSBarry Smith PetscFunctionBegin; 25339566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)dm,&comm)); 25349566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &cellDim)); 25359566063dSJacob Faibussowitsch if (debug) PetscCall(PetscPrintf(comm, "cellDim: %d numCorners: %d\n", cellDim, numCorners)); 2536e6ccafaeSMatthew G Knepley 2537ddeab2a6SMatthew G. Knepley if (cellDim == 1 && numCorners == 2) { 2538ddeab2a6SMatthew G. Knepley /* Triangle */ 2539e6ccafaeSMatthew G Knepley faceSize = numCorners-1; 2540e6ccafaeSMatthew G Knepley posOrient = !(oppositeVertex%2) ? PETSC_TRUE : PETSC_FALSE; 2541ddeab2a6SMatthew G. Knepley } else if (cellDim == 2 && numCorners == 3) { 2542ddeab2a6SMatthew G. Knepley /* Triangle */ 2543ddeab2a6SMatthew G. Knepley faceSize = numCorners-1; 2544ddeab2a6SMatthew G. Knepley posOrient = !(oppositeVertex%2) ? PETSC_TRUE : PETSC_FALSE; 2545ddeab2a6SMatthew G. Knepley } else if (cellDim == 3 && numCorners == 4) { 2546ddeab2a6SMatthew G. Knepley /* Tetrahedron */ 2547ddeab2a6SMatthew G. Knepley faceSize = numCorners-1; 2548ddeab2a6SMatthew G. Knepley posOrient = (oppositeVertex%2) ? PETSC_TRUE : PETSC_FALSE; 2549e6ccafaeSMatthew G Knepley } else if (cellDim == 1 && numCorners == 3) { 2550e6ccafaeSMatthew G Knepley /* Quadratic line */ 2551e6ccafaeSMatthew G Knepley faceSize = 1; 2552e6ccafaeSMatthew G Knepley posOrient = PETSC_TRUE; 2553e6ccafaeSMatthew G Knepley } else if (cellDim == 2 && numCorners == 4) { 2554e6ccafaeSMatthew G Knepley /* Quads */ 2555e6ccafaeSMatthew G Knepley faceSize = 2; 2556e6ccafaeSMatthew G Knepley if ((indices[1] > indices[0]) && (indices[1] - indices[0] == 1)) { 2557e6ccafaeSMatthew G Knepley posOrient = PETSC_TRUE; 2558e6ccafaeSMatthew G Knepley } else if ((indices[0] == 3) && (indices[1] == 0)) { 2559e6ccafaeSMatthew G Knepley posOrient = PETSC_TRUE; 2560e6ccafaeSMatthew G Knepley } else { 2561e6ccafaeSMatthew G Knepley if (((indices[0] > indices[1]) && (indices[0] - indices[1] == 1)) || ((indices[0] == 0) && (indices[1] == 3))) { 2562e6ccafaeSMatthew G Knepley posOrient = PETSC_FALSE; 2563e6ccafaeSMatthew G Knepley } else SETERRQ(comm, PETSC_ERR_ARG_WRONG, "Invalid quad crossedge"); 2564e6ccafaeSMatthew G Knepley } 2565e6ccafaeSMatthew G Knepley } else if (cellDim == 2 && numCorners == 6) { 2566e6ccafaeSMatthew G Knepley /* Quadratic triangle (I hate this) */ 2567e6ccafaeSMatthew G Knepley /* Edges are determined by the first 2 vertices (corners of edges) */ 2568e6ccafaeSMatthew G Knepley const PetscInt faceSizeTri = 3; 2569e6ccafaeSMatthew G Knepley PetscInt sortedIndices[3], i, iFace; 2570e6ccafaeSMatthew G Knepley PetscBool found = PETSC_FALSE; 2571e6ccafaeSMatthew G Knepley PetscInt faceVerticesTriSorted[9] = { 2572e6ccafaeSMatthew G Knepley 0, 3, 4, /* bottom */ 2573e6ccafaeSMatthew G Knepley 1, 4, 5, /* right */ 2574e6ccafaeSMatthew G Knepley 2, 3, 5, /* left */ 2575e6ccafaeSMatthew G Knepley }; 2576e6ccafaeSMatthew G Knepley PetscInt faceVerticesTri[9] = { 2577e6ccafaeSMatthew G Knepley 0, 3, 4, /* bottom */ 2578e6ccafaeSMatthew G Knepley 1, 4, 5, /* right */ 2579e6ccafaeSMatthew G Knepley 2, 5, 3, /* left */ 2580e6ccafaeSMatthew G Knepley }; 2581e6ccafaeSMatthew G Knepley 2582e6ccafaeSMatthew G Knepley for (i = 0; i < faceSizeTri; ++i) sortedIndices[i] = indices[i]; 25839566063dSJacob Faibussowitsch PetscCall(PetscSortInt(faceSizeTri, sortedIndices)); 2584e6ccafaeSMatthew G Knepley for (iFace = 0; iFace < 3; ++iFace) { 2585e6ccafaeSMatthew G Knepley const PetscInt ii = iFace*faceSizeTri; 2586e6ccafaeSMatthew G Knepley PetscInt fVertex, cVertex; 2587e6ccafaeSMatthew G Knepley 2588e6ccafaeSMatthew G Knepley if ((sortedIndices[0] == faceVerticesTriSorted[ii+0]) && 2589e6ccafaeSMatthew G Knepley (sortedIndices[1] == faceVerticesTriSorted[ii+1])) { 2590e6ccafaeSMatthew G Knepley for (fVertex = 0; fVertex < faceSizeTri; ++fVertex) { 2591e6ccafaeSMatthew G Knepley for (cVertex = 0; cVertex < faceSizeTri; ++cVertex) { 2592e6ccafaeSMatthew G Knepley if (indices[cVertex] == faceVerticesTri[ii+fVertex]) { 2593e6ccafaeSMatthew G Knepley faceVertices[fVertex] = origVertices[cVertex]; 2594e6ccafaeSMatthew G Knepley break; 2595e6ccafaeSMatthew G Knepley } 2596e6ccafaeSMatthew G Knepley } 2597e6ccafaeSMatthew G Knepley } 2598e6ccafaeSMatthew G Knepley found = PETSC_TRUE; 2599e6ccafaeSMatthew G Knepley break; 2600e6ccafaeSMatthew G Knepley } 2601e6ccafaeSMatthew G Knepley } 260228b400f6SJacob Faibussowitsch PetscCheck(found,comm, PETSC_ERR_ARG_WRONG, "Invalid tri crossface"); 2603e6ccafaeSMatthew G Knepley if (posOriented) *posOriented = PETSC_TRUE; 2604e6ccafaeSMatthew G Knepley PetscFunctionReturn(0); 2605e6ccafaeSMatthew G Knepley } else if (cellDim == 2 && numCorners == 9) { 2606e6ccafaeSMatthew G Knepley /* Quadratic quad (I hate this) */ 2607e6ccafaeSMatthew G Knepley /* Edges are determined by the first 2 vertices (corners of edges) */ 2608e6ccafaeSMatthew G Knepley const PetscInt faceSizeQuad = 3; 2609e6ccafaeSMatthew G Knepley PetscInt sortedIndices[3], i, iFace; 2610e6ccafaeSMatthew G Knepley PetscBool found = PETSC_FALSE; 2611e6ccafaeSMatthew G Knepley PetscInt faceVerticesQuadSorted[12] = { 2612e6ccafaeSMatthew G Knepley 0, 1, 4, /* bottom */ 2613e6ccafaeSMatthew G Knepley 1, 2, 5, /* right */ 2614e6ccafaeSMatthew G Knepley 2, 3, 6, /* top */ 2615e6ccafaeSMatthew G Knepley 0, 3, 7, /* left */ 2616e6ccafaeSMatthew G Knepley }; 2617e6ccafaeSMatthew G Knepley PetscInt faceVerticesQuad[12] = { 2618e6ccafaeSMatthew G Knepley 0, 1, 4, /* bottom */ 2619e6ccafaeSMatthew G Knepley 1, 2, 5, /* right */ 2620e6ccafaeSMatthew G Knepley 2, 3, 6, /* top */ 2621e6ccafaeSMatthew G Knepley 3, 0, 7, /* left */ 2622e6ccafaeSMatthew G Knepley }; 2623e6ccafaeSMatthew G Knepley 2624e6ccafaeSMatthew G Knepley for (i = 0; i < faceSizeQuad; ++i) sortedIndices[i] = indices[i]; 26259566063dSJacob Faibussowitsch PetscCall(PetscSortInt(faceSizeQuad, sortedIndices)); 2626e6ccafaeSMatthew G Knepley for (iFace = 0; iFace < 4; ++iFace) { 2627e6ccafaeSMatthew G Knepley const PetscInt ii = iFace*faceSizeQuad; 2628e6ccafaeSMatthew G Knepley PetscInt fVertex, cVertex; 2629e6ccafaeSMatthew G Knepley 2630e6ccafaeSMatthew G Knepley if ((sortedIndices[0] == faceVerticesQuadSorted[ii+0]) && 2631e6ccafaeSMatthew G Knepley (sortedIndices[1] == faceVerticesQuadSorted[ii+1])) { 2632e6ccafaeSMatthew G Knepley for (fVertex = 0; fVertex < faceSizeQuad; ++fVertex) { 2633e6ccafaeSMatthew G Knepley for (cVertex = 0; cVertex < faceSizeQuad; ++cVertex) { 2634e6ccafaeSMatthew G Knepley if (indices[cVertex] == faceVerticesQuad[ii+fVertex]) { 2635e6ccafaeSMatthew G Knepley faceVertices[fVertex] = origVertices[cVertex]; 2636e6ccafaeSMatthew G Knepley break; 2637e6ccafaeSMatthew G Knepley } 2638e6ccafaeSMatthew G Knepley } 2639e6ccafaeSMatthew G Knepley } 2640e6ccafaeSMatthew G Knepley found = PETSC_TRUE; 2641e6ccafaeSMatthew G Knepley break; 2642e6ccafaeSMatthew G Knepley } 2643e6ccafaeSMatthew G Knepley } 264428b400f6SJacob Faibussowitsch PetscCheck(found,comm, PETSC_ERR_ARG_WRONG, "Invalid quad crossface"); 2645e6ccafaeSMatthew G Knepley if (posOriented) *posOriented = PETSC_TRUE; 2646e6ccafaeSMatthew G Knepley PetscFunctionReturn(0); 2647e6ccafaeSMatthew G Knepley } else if (cellDim == 3 && numCorners == 8) { 2648e6ccafaeSMatthew G Knepley /* Hexes 2649e6ccafaeSMatthew G Knepley A hex is two oriented quads with the normal of the first 2650e6ccafaeSMatthew G Knepley pointing up at the second. 2651e6ccafaeSMatthew G Knepley 2652e6ccafaeSMatthew G Knepley 7---6 2653e6ccafaeSMatthew G Knepley /| /| 2654e6ccafaeSMatthew G Knepley 4---5 | 2655ddeab2a6SMatthew G. Knepley | 1-|-2 2656e6ccafaeSMatthew G Knepley |/ |/ 2657ddeab2a6SMatthew G. Knepley 0---3 2658e6ccafaeSMatthew G Knepley 2659e6ccafaeSMatthew G Knepley Faces are determined by the first 4 vertices (corners of faces) */ 2660e6ccafaeSMatthew G Knepley const PetscInt faceSizeHex = 4; 2661e6ccafaeSMatthew G Knepley PetscInt sortedIndices[4], i, iFace; 2662e6ccafaeSMatthew G Knepley PetscBool found = PETSC_FALSE; 2663e6ccafaeSMatthew G Knepley PetscInt faceVerticesHexSorted[24] = { 2664e6ccafaeSMatthew G Knepley 0, 1, 2, 3, /* bottom */ 2665e6ccafaeSMatthew G Knepley 4, 5, 6, 7, /* top */ 2666ddeab2a6SMatthew G. Knepley 0, 3, 4, 5, /* front */ 2667ddeab2a6SMatthew G. Knepley 2, 3, 5, 6, /* right */ 2668ddeab2a6SMatthew G. Knepley 1, 2, 6, 7, /* back */ 2669ddeab2a6SMatthew G. Knepley 0, 1, 4, 7, /* left */ 2670e6ccafaeSMatthew G Knepley }; 2671e6ccafaeSMatthew G Knepley PetscInt faceVerticesHex[24] = { 2672ddeab2a6SMatthew G. Knepley 1, 2, 3, 0, /* bottom */ 2673e6ccafaeSMatthew G Knepley 4, 5, 6, 7, /* top */ 2674ddeab2a6SMatthew G. Knepley 0, 3, 5, 4, /* front */ 2675ddeab2a6SMatthew G. Knepley 3, 2, 6, 5, /* right */ 2676ddeab2a6SMatthew G. Knepley 2, 1, 7, 6, /* back */ 2677ddeab2a6SMatthew G. Knepley 1, 0, 4, 7, /* left */ 2678e6ccafaeSMatthew G Knepley }; 2679e6ccafaeSMatthew G Knepley 2680e6ccafaeSMatthew G Knepley for (i = 0; i < faceSizeHex; ++i) sortedIndices[i] = indices[i]; 26819566063dSJacob Faibussowitsch PetscCall(PetscSortInt(faceSizeHex, sortedIndices)); 2682e6ccafaeSMatthew G Knepley for (iFace = 0; iFace < 6; ++iFace) { 2683e6ccafaeSMatthew G Knepley const PetscInt ii = iFace*faceSizeHex; 2684e6ccafaeSMatthew G Knepley PetscInt fVertex, cVertex; 2685e6ccafaeSMatthew G Knepley 2686e6ccafaeSMatthew G Knepley if ((sortedIndices[0] == faceVerticesHexSorted[ii+0]) && 2687e6ccafaeSMatthew G Knepley (sortedIndices[1] == faceVerticesHexSorted[ii+1]) && 2688e6ccafaeSMatthew G Knepley (sortedIndices[2] == faceVerticesHexSorted[ii+2]) && 2689e6ccafaeSMatthew G Knepley (sortedIndices[3] == faceVerticesHexSorted[ii+3])) { 2690e6ccafaeSMatthew G Knepley for (fVertex = 0; fVertex < faceSizeHex; ++fVertex) { 2691e6ccafaeSMatthew G Knepley for (cVertex = 0; cVertex < faceSizeHex; ++cVertex) { 2692e6ccafaeSMatthew G Knepley if (indices[cVertex] == faceVerticesHex[ii+fVertex]) { 2693e6ccafaeSMatthew G Knepley faceVertices[fVertex] = origVertices[cVertex]; 2694e6ccafaeSMatthew G Knepley break; 2695e6ccafaeSMatthew G Knepley } 2696e6ccafaeSMatthew G Knepley } 2697e6ccafaeSMatthew G Knepley } 2698e6ccafaeSMatthew G Knepley found = PETSC_TRUE; 2699e6ccafaeSMatthew G Knepley break; 2700e6ccafaeSMatthew G Knepley } 2701e6ccafaeSMatthew G Knepley } 270228b400f6SJacob Faibussowitsch PetscCheck(found,comm, PETSC_ERR_ARG_WRONG, "Invalid hex crossface"); 2703e6ccafaeSMatthew G Knepley if (posOriented) *posOriented = PETSC_TRUE; 2704e6ccafaeSMatthew G Knepley PetscFunctionReturn(0); 2705e6ccafaeSMatthew G Knepley } else if (cellDim == 3 && numCorners == 10) { 2706e6ccafaeSMatthew G Knepley /* Quadratic tet */ 2707e6ccafaeSMatthew G Knepley /* Faces are determined by the first 3 vertices (corners of faces) */ 2708e6ccafaeSMatthew G Knepley const PetscInt faceSizeTet = 6; 2709e6ccafaeSMatthew G Knepley PetscInt sortedIndices[6], i, iFace; 2710e6ccafaeSMatthew G Knepley PetscBool found = PETSC_FALSE; 2711e6ccafaeSMatthew G Knepley PetscInt faceVerticesTetSorted[24] = { 2712e6ccafaeSMatthew G Knepley 0, 1, 2, 6, 7, 8, /* bottom */ 2713e6ccafaeSMatthew G Knepley 0, 3, 4, 6, 7, 9, /* front */ 2714e6ccafaeSMatthew G Knepley 1, 4, 5, 7, 8, 9, /* right */ 2715e6ccafaeSMatthew G Knepley 2, 3, 5, 6, 8, 9, /* left */ 2716e6ccafaeSMatthew G Knepley }; 2717e6ccafaeSMatthew G Knepley PetscInt faceVerticesTet[24] = { 2718e6ccafaeSMatthew G Knepley 0, 1, 2, 6, 7, 8, /* bottom */ 2719e6ccafaeSMatthew G Knepley 0, 4, 3, 6, 7, 9, /* front */ 2720e6ccafaeSMatthew G Knepley 1, 5, 4, 7, 8, 9, /* right */ 2721e6ccafaeSMatthew G Knepley 2, 3, 5, 8, 6, 9, /* left */ 2722e6ccafaeSMatthew G Knepley }; 2723e6ccafaeSMatthew G Knepley 2724e6ccafaeSMatthew G Knepley for (i = 0; i < faceSizeTet; ++i) sortedIndices[i] = indices[i]; 27259566063dSJacob Faibussowitsch PetscCall(PetscSortInt(faceSizeTet, sortedIndices)); 2726e6ccafaeSMatthew G Knepley for (iFace=0; iFace < 4; ++iFace) { 2727e6ccafaeSMatthew G Knepley const PetscInt ii = iFace*faceSizeTet; 2728e6ccafaeSMatthew G Knepley PetscInt fVertex, cVertex; 2729e6ccafaeSMatthew G Knepley 2730e6ccafaeSMatthew G Knepley if ((sortedIndices[0] == faceVerticesTetSorted[ii+0]) && 2731e6ccafaeSMatthew G Knepley (sortedIndices[1] == faceVerticesTetSorted[ii+1]) && 2732e6ccafaeSMatthew G Knepley (sortedIndices[2] == faceVerticesTetSorted[ii+2]) && 2733e6ccafaeSMatthew G Knepley (sortedIndices[3] == faceVerticesTetSorted[ii+3])) { 2734e6ccafaeSMatthew G Knepley for (fVertex = 0; fVertex < faceSizeTet; ++fVertex) { 2735e6ccafaeSMatthew G Knepley for (cVertex = 0; cVertex < faceSizeTet; ++cVertex) { 2736e6ccafaeSMatthew G Knepley if (indices[cVertex] == faceVerticesTet[ii+fVertex]) { 2737e6ccafaeSMatthew G Knepley faceVertices[fVertex] = origVertices[cVertex]; 2738e6ccafaeSMatthew G Knepley break; 2739e6ccafaeSMatthew G Knepley } 2740e6ccafaeSMatthew G Knepley } 2741e6ccafaeSMatthew G Knepley } 2742e6ccafaeSMatthew G Knepley found = PETSC_TRUE; 2743e6ccafaeSMatthew G Knepley break; 2744e6ccafaeSMatthew G Knepley } 2745e6ccafaeSMatthew G Knepley } 274628b400f6SJacob Faibussowitsch PetscCheck(found,comm, PETSC_ERR_ARG_WRONG, "Invalid tet crossface"); 2747e6ccafaeSMatthew G Knepley if (posOriented) *posOriented = PETSC_TRUE; 2748e6ccafaeSMatthew G Knepley PetscFunctionReturn(0); 2749e6ccafaeSMatthew G Knepley } else if (cellDim == 3 && numCorners == 27) { 2750e6ccafaeSMatthew G Knepley /* Quadratic hexes (I hate this) 2751e6ccafaeSMatthew G Knepley A hex is two oriented quads with the normal of the first 2752e6ccafaeSMatthew G Knepley pointing up at the second. 2753e6ccafaeSMatthew G Knepley 2754e6ccafaeSMatthew G Knepley 7---6 2755e6ccafaeSMatthew G Knepley /| /| 2756e6ccafaeSMatthew G Knepley 4---5 | 2757e6ccafaeSMatthew G Knepley | 3-|-2 2758e6ccafaeSMatthew G Knepley |/ |/ 2759e6ccafaeSMatthew G Knepley 0---1 2760e6ccafaeSMatthew G Knepley 2761e6ccafaeSMatthew G Knepley Faces are determined by the first 4 vertices (corners of faces) */ 2762e6ccafaeSMatthew G Knepley const PetscInt faceSizeQuadHex = 9; 2763e6ccafaeSMatthew G Knepley PetscInt sortedIndices[9], i, iFace; 2764e6ccafaeSMatthew G Knepley PetscBool found = PETSC_FALSE; 2765e6ccafaeSMatthew G Knepley PetscInt faceVerticesQuadHexSorted[54] = { 2766e6ccafaeSMatthew G Knepley 0, 1, 2, 3, 8, 9, 10, 11, 24, /* bottom */ 2767e6ccafaeSMatthew G Knepley 4, 5, 6, 7, 12, 13, 14, 15, 25, /* top */ 2768e6ccafaeSMatthew G Knepley 0, 1, 4, 5, 8, 12, 16, 17, 22, /* front */ 2769e6ccafaeSMatthew G Knepley 1, 2, 5, 6, 9, 13, 17, 18, 21, /* right */ 2770e6ccafaeSMatthew G Knepley 2, 3, 6, 7, 10, 14, 18, 19, 23, /* back */ 2771e6ccafaeSMatthew G Knepley 0, 3, 4, 7, 11, 15, 16, 19, 20, /* left */ 2772e6ccafaeSMatthew G Knepley }; 2773e6ccafaeSMatthew G Knepley PetscInt faceVerticesQuadHex[54] = { 2774e6ccafaeSMatthew G Knepley 3, 2, 1, 0, 10, 9, 8, 11, 24, /* bottom */ 2775e6ccafaeSMatthew G Knepley 4, 5, 6, 7, 12, 13, 14, 15, 25, /* top */ 2776e6ccafaeSMatthew G Knepley 0, 1, 5, 4, 8, 17, 12, 16, 22, /* front */ 2777e6ccafaeSMatthew G Knepley 1, 2, 6, 5, 9, 18, 13, 17, 21, /* right */ 2778e6ccafaeSMatthew G Knepley 2, 3, 7, 6, 10, 19, 14, 18, 23, /* back */ 2779e6ccafaeSMatthew G Knepley 3, 0, 4, 7, 11, 16, 15, 19, 20 /* left */ 2780e6ccafaeSMatthew G Knepley }; 2781e6ccafaeSMatthew G Knepley 2782e6ccafaeSMatthew G Knepley for (i = 0; i < faceSizeQuadHex; ++i) sortedIndices[i] = indices[i]; 27839566063dSJacob Faibussowitsch PetscCall(PetscSortInt(faceSizeQuadHex, sortedIndices)); 2784e6ccafaeSMatthew G Knepley for (iFace = 0; iFace < 6; ++iFace) { 2785e6ccafaeSMatthew G Knepley const PetscInt ii = iFace*faceSizeQuadHex; 2786e6ccafaeSMatthew G Knepley PetscInt fVertex, cVertex; 2787e6ccafaeSMatthew G Knepley 2788e6ccafaeSMatthew G Knepley if ((sortedIndices[0] == faceVerticesQuadHexSorted[ii+0]) && 2789e6ccafaeSMatthew G Knepley (sortedIndices[1] == faceVerticesQuadHexSorted[ii+1]) && 2790e6ccafaeSMatthew G Knepley (sortedIndices[2] == faceVerticesQuadHexSorted[ii+2]) && 2791e6ccafaeSMatthew G Knepley (sortedIndices[3] == faceVerticesQuadHexSorted[ii+3])) { 2792e6ccafaeSMatthew G Knepley for (fVertex = 0; fVertex < faceSizeQuadHex; ++fVertex) { 2793e6ccafaeSMatthew G Knepley for (cVertex = 0; cVertex < faceSizeQuadHex; ++cVertex) { 2794e6ccafaeSMatthew G Knepley if (indices[cVertex] == faceVerticesQuadHex[ii+fVertex]) { 2795e6ccafaeSMatthew G Knepley faceVertices[fVertex] = origVertices[cVertex]; 2796e6ccafaeSMatthew G Knepley break; 2797e6ccafaeSMatthew G Knepley } 2798e6ccafaeSMatthew G Knepley } 2799e6ccafaeSMatthew G Knepley } 2800e6ccafaeSMatthew G Knepley found = PETSC_TRUE; 2801e6ccafaeSMatthew G Knepley break; 2802e6ccafaeSMatthew G Knepley } 2803e6ccafaeSMatthew G Knepley } 280428b400f6SJacob Faibussowitsch PetscCheck(found,comm, PETSC_ERR_ARG_WRONG, "Invalid hex crossface"); 2805e6ccafaeSMatthew G Knepley if (posOriented) *posOriented = PETSC_TRUE; 2806e6ccafaeSMatthew G Knepley PetscFunctionReturn(0); 2807e6ccafaeSMatthew G Knepley } else SETERRQ(comm, PETSC_ERR_ARG_WRONG, "Unknown cell type for faceOrientation()."); 2808e6ccafaeSMatthew G Knepley if (!posOrient) { 28099566063dSJacob Faibussowitsch if (debug) PetscCall(PetscPrintf(comm, " Reversing initial face orientation\n")); 2810e6ccafaeSMatthew G Knepley for (f = 0; f < faceSize; ++f) faceVertices[f] = origVertices[faceSize-1 - f]; 2811e6ccafaeSMatthew G Knepley } else { 28129566063dSJacob Faibussowitsch if (debug) PetscCall(PetscPrintf(comm, " Keeping initial face orientation\n")); 2813e6ccafaeSMatthew G Knepley for (f = 0; f < faceSize; ++f) faceVertices[f] = origVertices[f]; 2814e6ccafaeSMatthew G Knepley } 2815e6ccafaeSMatthew G Knepley if (posOriented) *posOriented = posOrient; 2816e6ccafaeSMatthew G Knepley PetscFunctionReturn(0); 2817e6ccafaeSMatthew G Knepley } 2818e6ccafaeSMatthew G Knepley 2819c08575a3SMatthew G. Knepley /*@ 2820c08575a3SMatthew G. Knepley DMPlexGetOrientedFace - Given a cell and a face, as a set of vertices, return the oriented face, as a set of vertices, 2821c08575a3SMatthew G. Knepley in faceVertices. The orientation is such that the face normal points out of the cell 2822c08575a3SMatthew G. Knepley 2823c08575a3SMatthew G. Knepley Not collective 2824c08575a3SMatthew G. Knepley 2825c08575a3SMatthew G. Knepley Input Parameters: 2826c08575a3SMatthew G. Knepley + dm - The original mesh 2827c08575a3SMatthew G. Knepley . cell - The cell mesh point 2828c08575a3SMatthew G. Knepley . faceSize - The number of vertices on the face 2829c08575a3SMatthew G. Knepley . face - The face vertices 2830c08575a3SMatthew G. Knepley . numCorners - The number of vertices on the cell 2831c08575a3SMatthew G. Knepley . indices - Local numbering of face vertices in cell cone 2832c08575a3SMatthew G. Knepley - origVertices - Original face vertices 2833c08575a3SMatthew G. Knepley 2834d8d19677SJose E. Roman Output Parameters: 2835c08575a3SMatthew G. Knepley + faceVertices - The face vertices properly oriented 2836c08575a3SMatthew G. Knepley - posOriented - PETSC_TRUE if the face was oriented with outward normal 2837c08575a3SMatthew G. Knepley 2838c08575a3SMatthew G. Knepley Level: developer 2839c08575a3SMatthew G. Knepley 2840c08575a3SMatthew G. Knepley .seealso: DMPlexGetCone() 2841c08575a3SMatthew G. Knepley @*/ 2842e6ccafaeSMatthew G Knepley PetscErrorCode DMPlexGetOrientedFace(DM dm, PetscInt cell, PetscInt faceSize, const PetscInt face[], PetscInt numCorners, PetscInt indices[], PetscInt origVertices[], PetscInt faceVertices[], PetscBool *posOriented) 2843e6ccafaeSMatthew G Knepley { 28440298fd71SBarry Smith const PetscInt *cone = NULL; 2845e6ccafaeSMatthew G Knepley PetscInt coneSize, v, f, v2; 2846e6ccafaeSMatthew G Knepley PetscInt oppositeVertex = -1; 2847e6ccafaeSMatthew G Knepley 2848e6ccafaeSMatthew G Knepley PetscFunctionBegin; 28499566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, cell, &coneSize)); 28509566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, cell, &cone)); 2851e6ccafaeSMatthew G Knepley for (v = 0, v2 = 0; v < coneSize; ++v) { 2852e6ccafaeSMatthew G Knepley PetscBool found = PETSC_FALSE; 2853e6ccafaeSMatthew G Knepley 2854e6ccafaeSMatthew G Knepley for (f = 0; f < faceSize; ++f) { 2855e6ccafaeSMatthew G Knepley if (face[f] == cone[v]) { 2856e6ccafaeSMatthew G Knepley found = PETSC_TRUE; break; 2857e6ccafaeSMatthew G Knepley } 2858e6ccafaeSMatthew G Knepley } 2859e6ccafaeSMatthew G Knepley if (found) { 2860e6ccafaeSMatthew G Knepley indices[v2] = v; 2861e6ccafaeSMatthew G Knepley origVertices[v2] = cone[v]; 2862e6ccafaeSMatthew G Knepley ++v2; 2863e6ccafaeSMatthew G Knepley } else { 2864e6ccafaeSMatthew G Knepley oppositeVertex = v; 2865e6ccafaeSMatthew G Knepley } 2866e6ccafaeSMatthew G Knepley } 28679566063dSJacob Faibussowitsch PetscCall(DMPlexGetFaceOrientation(dm, cell, numCorners, indices, oppositeVertex, origVertices, faceVertices, posOriented)); 2868e6ccafaeSMatthew G Knepley PetscFunctionReturn(0); 2869e6ccafaeSMatthew G Knepley } 2870e6ccafaeSMatthew G Knepley 2871e6ccafaeSMatthew G Knepley /* 2872cd0c2139SMatthew G Knepley DMPlexInsertFace_Internal - Puts a face into the mesh 2873e6ccafaeSMatthew G Knepley 2874e6ccafaeSMatthew G Knepley Not collective 2875e6ccafaeSMatthew G Knepley 2876e6ccafaeSMatthew G Knepley Input Parameters: 2877e6ccafaeSMatthew G Knepley + dm - The DMPlex 2878e6ccafaeSMatthew G Knepley . numFaceVertex - The number of vertices in the face 2879e6ccafaeSMatthew G Knepley . faceVertices - The vertices in the face for dm 2880e6ccafaeSMatthew G Knepley . subfaceVertices - The vertices in the face for subdm 2881e6ccafaeSMatthew G Knepley . numCorners - The number of vertices in the cell 2882e6ccafaeSMatthew G Knepley . cell - A cell in dm containing the face 2883e6ccafaeSMatthew G Knepley . subcell - A cell in subdm containing the face 2884e6ccafaeSMatthew G Knepley . firstFace - First face in the mesh 2885e6ccafaeSMatthew G Knepley - newFacePoint - Next face in the mesh 2886e6ccafaeSMatthew G Knepley 2887e6ccafaeSMatthew G Knepley Output Parameters: 2888e6ccafaeSMatthew G Knepley . newFacePoint - Contains next face point number on input, updated on output 2889e6ccafaeSMatthew G Knepley 2890e6ccafaeSMatthew G Knepley Level: developer 2891e6ccafaeSMatthew G Knepley */ 2892cd0c2139SMatthew G Knepley static PetscErrorCode DMPlexInsertFace_Internal(DM dm, DM subdm, PetscInt numFaceVertices, const PetscInt faceVertices[], const PetscInt subfaceVertices[], PetscInt numCorners, PetscInt cell, PetscInt subcell, PetscInt firstFace, PetscInt *newFacePoint) 2893e6ccafaeSMatthew G Knepley { 289482f516ccSBarry Smith MPI_Comm comm; 2895e6ccafaeSMatthew G Knepley DM_Plex *submesh = (DM_Plex*) subdm->data; 2896e6ccafaeSMatthew G Knepley const PetscInt *faces; 2897e6ccafaeSMatthew G Knepley PetscInt numFaces, coneSize; 2898e6ccafaeSMatthew G Knepley 2899e6ccafaeSMatthew G Knepley PetscFunctionBegin; 29009566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)dm,&comm)); 29019566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(subdm, subcell, &coneSize)); 290208401ef6SPierre Jolivet PetscCheck(coneSize == 1,comm, PETSC_ERR_ARG_OUTOFRANGE, "Cone size of cell %d is %d != 1", cell, coneSize); 2903e6ccafaeSMatthew G Knepley #if 0 2904e6ccafaeSMatthew G Knepley /* Cannot use this because support() has not been constructed yet */ 29059566063dSJacob Faibussowitsch PetscCall(DMPlexGetJoin(subdm, numFaceVertices, subfaceVertices, &numFaces, &faces)); 2906e6ccafaeSMatthew G Knepley #else 2907e6ccafaeSMatthew G Knepley { 2908e6ccafaeSMatthew G Knepley PetscInt f; 2909e6ccafaeSMatthew G Knepley 2910e6ccafaeSMatthew G Knepley numFaces = 0; 29119566063dSJacob Faibussowitsch PetscCall(DMGetWorkArray(subdm, 1, MPIU_INT, (void **) &faces)); 2912e6ccafaeSMatthew G Knepley for (f = firstFace; f < *newFacePoint; ++f) { 2913e6ccafaeSMatthew G Knepley PetscInt dof, off, d; 2914e6ccafaeSMatthew G Knepley 29159566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(submesh->coneSection, f, &dof)); 29169566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(submesh->coneSection, f, &off)); 2917e6ccafaeSMatthew G Knepley /* Yes, I know this is quadratic, but I expect the sizes to be <5 */ 2918e6ccafaeSMatthew G Knepley for (d = 0; d < dof; ++d) { 2919e6ccafaeSMatthew G Knepley const PetscInt p = submesh->cones[off+d]; 2920e6ccafaeSMatthew G Knepley PetscInt v; 2921e6ccafaeSMatthew G Knepley 2922e6ccafaeSMatthew G Knepley for (v = 0; v < numFaceVertices; ++v) { 2923e6ccafaeSMatthew G Knepley if (subfaceVertices[v] == p) break; 2924e6ccafaeSMatthew G Knepley } 2925e6ccafaeSMatthew G Knepley if (v == numFaceVertices) break; 2926e6ccafaeSMatthew G Knepley } 2927e6ccafaeSMatthew G Knepley if (d == dof) { 2928e6ccafaeSMatthew G Knepley numFaces = 1; 2929e6ccafaeSMatthew G Knepley ((PetscInt*) faces)[0] = f; 2930e6ccafaeSMatthew G Knepley } 2931e6ccafaeSMatthew G Knepley } 2932e6ccafaeSMatthew G Knepley } 2933e6ccafaeSMatthew G Knepley #endif 293408401ef6SPierre Jolivet PetscCheck(numFaces <= 1,comm, PETSC_ERR_ARG_WRONG, "Vertex set had %d faces, not one", numFaces); 2935e6ccafaeSMatthew G Knepley else if (numFaces == 1) { 2936e6ccafaeSMatthew G Knepley /* Add the other cell neighbor for this face */ 29379566063dSJacob Faibussowitsch PetscCall(DMPlexSetCone(subdm, subcell, faces)); 2938e6ccafaeSMatthew G Knepley } else { 2939e6ccafaeSMatthew G Knepley PetscInt *indices, *origVertices, *orientedVertices, *orientedSubVertices, v, ov; 2940e6ccafaeSMatthew G Knepley PetscBool posOriented; 2941e6ccafaeSMatthew G Knepley 29429566063dSJacob Faibussowitsch PetscCall(DMGetWorkArray(subdm, 4*numFaceVertices * sizeof(PetscInt), MPIU_INT, &orientedVertices)); 2943e6ccafaeSMatthew G Knepley origVertices = &orientedVertices[numFaceVertices]; 2944e6ccafaeSMatthew G Knepley indices = &orientedVertices[numFaceVertices*2]; 2945e6ccafaeSMatthew G Knepley orientedSubVertices = &orientedVertices[numFaceVertices*3]; 29469566063dSJacob Faibussowitsch PetscCall(DMPlexGetOrientedFace(dm, cell, numFaceVertices, faceVertices, numCorners, indices, origVertices, orientedVertices, &posOriented)); 2947e6ccafaeSMatthew G Knepley /* TODO: I know that routine should return a permutation, not the indices */ 2948e6ccafaeSMatthew G Knepley for (v = 0; v < numFaceVertices; ++v) { 2949e6ccafaeSMatthew G Knepley const PetscInt vertex = faceVertices[v], subvertex = subfaceVertices[v]; 2950e6ccafaeSMatthew G Knepley for (ov = 0; ov < numFaceVertices; ++ov) { 2951e6ccafaeSMatthew G Knepley if (orientedVertices[ov] == vertex) { 2952e6ccafaeSMatthew G Knepley orientedSubVertices[ov] = subvertex; 2953e6ccafaeSMatthew G Knepley break; 2954e6ccafaeSMatthew G Knepley } 2955e6ccafaeSMatthew G Knepley } 295608401ef6SPierre Jolivet PetscCheck(ov != numFaceVertices,comm, PETSC_ERR_PLIB, "Could not find face vertex %d in orientated set", vertex); 2957e6ccafaeSMatthew G Knepley } 29589566063dSJacob Faibussowitsch PetscCall(DMPlexSetCone(subdm, *newFacePoint, orientedSubVertices)); 29599566063dSJacob Faibussowitsch PetscCall(DMPlexSetCone(subdm, subcell, newFacePoint)); 29609566063dSJacob Faibussowitsch PetscCall(DMRestoreWorkArray(subdm, 4*numFaceVertices * sizeof(PetscInt), MPIU_INT, &orientedVertices)); 2961e6ccafaeSMatthew G Knepley ++(*newFacePoint); 2962e6ccafaeSMatthew G Knepley } 2963ef07cca7SMatthew G. Knepley #if 0 29649566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreJoin(subdm, numFaceVertices, subfaceVertices, &numFaces, &faces)); 2965ef07cca7SMatthew G. Knepley #else 29669566063dSJacob Faibussowitsch PetscCall(DMRestoreWorkArray(subdm, 1, MPIU_INT, (void **) &faces)); 2967ef07cca7SMatthew G. Knepley #endif 2968e6ccafaeSMatthew G Knepley PetscFunctionReturn(0); 2969e6ccafaeSMatthew G Knepley } 2970e6ccafaeSMatthew G Knepley 297153156dfcSMatthew G. Knepley static PetscErrorCode DMPlexCreateSubmesh_Uninterpolated(DM dm, DMLabel vertexLabel, PetscInt value, DM subdm) 2972e6ccafaeSMatthew G Knepley { 297382f516ccSBarry Smith MPI_Comm comm; 297453156dfcSMatthew G. Knepley DMLabel subpointMap; 2975efa14ee0SMatthew G Knepley IS subvertexIS, subcellIS; 2976efa14ee0SMatthew G Knepley const PetscInt *subVertices, *subCells; 2977efa14ee0SMatthew G Knepley PetscInt numSubVertices, firstSubVertex, numSubCells; 2978fed694aaSMatthew G. Knepley PetscInt *subface, maxConeSize, numSubFaces = 0, firstSubFace, newFacePoint, nFV = 0; 2979efa14ee0SMatthew G Knepley PetscInt vStart, vEnd, c, f; 2980e6ccafaeSMatthew G Knepley 2981e6ccafaeSMatthew G Knepley PetscFunctionBegin; 29829566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)dm,&comm)); 2983efa14ee0SMatthew G Knepley /* Create subpointMap which marks the submesh */ 29849566063dSJacob Faibussowitsch PetscCall(DMLabelCreate(PETSC_COMM_SELF, "subpoint_map", &subpointMap)); 29859566063dSJacob Faibussowitsch PetscCall(DMPlexSetSubpointMap(subdm, subpointMap)); 29869566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&subpointMap)); 29879566063dSJacob Faibussowitsch if (vertexLabel) PetscCall(DMPlexMarkSubmesh_Uninterpolated(dm, vertexLabel, value, subpointMap, &numSubFaces, &nFV, subdm)); 2988efa14ee0SMatthew G Knepley /* Setup chart */ 29899566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumSize(subpointMap, 0, &numSubVertices)); 29909566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumSize(subpointMap, 2, &numSubCells)); 29919566063dSJacob Faibussowitsch PetscCall(DMPlexSetChart(subdm, 0, numSubCells+numSubFaces+numSubVertices)); 29929566063dSJacob Faibussowitsch PetscCall(DMPlexSetVTKCellHeight(subdm, 1)); 2993e6ccafaeSMatthew G Knepley /* Set cone sizes */ 2994e6ccafaeSMatthew G Knepley firstSubVertex = numSubCells; 2995efa14ee0SMatthew G Knepley firstSubFace = numSubCells+numSubVertices; 2996e6ccafaeSMatthew G Knepley newFacePoint = firstSubFace; 29979566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(subpointMap, 0, &subvertexIS)); 29989566063dSJacob Faibussowitsch if (subvertexIS) PetscCall(ISGetIndices(subvertexIS, &subVertices)); 29999566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(subpointMap, 2, &subcellIS)); 30009566063dSJacob Faibussowitsch if (subcellIS) PetscCall(ISGetIndices(subcellIS, &subCells)); 3001e6ccafaeSMatthew G Knepley for (c = 0; c < numSubCells; ++c) { 30029566063dSJacob Faibussowitsch PetscCall(DMPlexSetConeSize(subdm, c, 1)); 3003e6ccafaeSMatthew G Knepley } 3004e6ccafaeSMatthew G Knepley for (f = firstSubFace; f < firstSubFace+numSubFaces; ++f) { 30059566063dSJacob Faibussowitsch PetscCall(DMPlexSetConeSize(subdm, f, nFV)); 3006e6ccafaeSMatthew G Knepley } 30079566063dSJacob Faibussowitsch PetscCall(DMSetUp(subdm)); 3008e6ccafaeSMatthew G Knepley /* Create face cones */ 30099566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthStratum(dm, 0, &vStart, &vEnd)); 30109566063dSJacob Faibussowitsch PetscCall(DMPlexGetMaxSizes(dm, &maxConeSize, NULL)); 30119566063dSJacob Faibussowitsch PetscCall(DMGetWorkArray(subdm, maxConeSize, MPIU_INT, (void**) &subface)); 3012e6ccafaeSMatthew G Knepley for (c = 0; c < numSubCells; ++c) { 3013e6ccafaeSMatthew G Knepley const PetscInt cell = subCells[c]; 3014efa14ee0SMatthew G Knepley const PetscInt subcell = c; 30150298fd71SBarry Smith PetscInt *closure = NULL; 3016efa14ee0SMatthew G Knepley PetscInt closureSize, cl, numCorners = 0, faceSize = 0; 3017e6ccafaeSMatthew G Knepley 30189566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(dm, cell, PETSC_TRUE, &closureSize, &closure)); 3019efa14ee0SMatthew G Knepley for (cl = 0; cl < closureSize*2; cl += 2) { 3020efa14ee0SMatthew G Knepley const PetscInt point = closure[cl]; 3021e6ccafaeSMatthew G Knepley PetscInt subVertex; 3022e6ccafaeSMatthew G Knepley 3023efa14ee0SMatthew G Knepley if ((point >= vStart) && (point < vEnd)) { 3024efa14ee0SMatthew G Knepley ++numCorners; 30259566063dSJacob Faibussowitsch PetscCall(PetscFindInt(point, numSubVertices, subVertices, &subVertex)); 3026efa14ee0SMatthew G Knepley if (subVertex >= 0) { 3027efa14ee0SMatthew G Knepley closure[faceSize] = point; 302865560c7fSMatthew G Knepley subface[faceSize] = firstSubVertex+subVertex; 3029e6ccafaeSMatthew G Knepley ++faceSize; 3030e6ccafaeSMatthew G Knepley } 3031e6ccafaeSMatthew G Knepley } 3032e6ccafaeSMatthew G Knepley } 303308401ef6SPierre Jolivet PetscCheck(faceSize <= nFV,comm, PETSC_ERR_ARG_WRONG, "Invalid submesh: Too many vertices %d of an element on the surface", faceSize); 3034efa14ee0SMatthew G Knepley if (faceSize == nFV) { 30359566063dSJacob Faibussowitsch PetscCall(DMPlexInsertFace_Internal(dm, subdm, faceSize, closure, subface, numCorners, cell, subcell, firstSubFace, &newFacePoint)); 3036e6ccafaeSMatthew G Knepley } 30379566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dm, cell, PETSC_TRUE, &closureSize, &closure)); 3038e6ccafaeSMatthew G Knepley } 30399566063dSJacob Faibussowitsch PetscCall(DMRestoreWorkArray(subdm, maxConeSize, MPIU_INT, (void**) &subface)); 30409566063dSJacob Faibussowitsch PetscCall(DMPlexSymmetrize(subdm)); 30419566063dSJacob Faibussowitsch PetscCall(DMPlexStratify(subdm)); 3042e6ccafaeSMatthew G Knepley /* Build coordinates */ 3043efa14ee0SMatthew G Knepley { 3044efa14ee0SMatthew G Knepley PetscSection coordSection, subCoordSection; 3045efa14ee0SMatthew G Knepley Vec coordinates, subCoordinates; 3046efa14ee0SMatthew G Knepley PetscScalar *coords, *subCoords; 3047285d324eSMatthew G. Knepley PetscInt numComp, coordSize, v; 304824640c55SToby Isaac const char *name; 3049efa14ee0SMatthew G Knepley 30509566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateSection(dm, &coordSection)); 30519566063dSJacob Faibussowitsch PetscCall(DMGetCoordinatesLocal(dm, &coordinates)); 30529566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateSection(subdm, &subCoordSection)); 30539566063dSJacob Faibussowitsch PetscCall(PetscSectionSetNumFields(subCoordSection, 1)); 30549566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldComponents(coordSection, 0, &numComp)); 30559566063dSJacob Faibussowitsch PetscCall(PetscSectionSetFieldComponents(subCoordSection, 0, numComp)); 30569566063dSJacob Faibussowitsch PetscCall(PetscSectionSetChart(subCoordSection, firstSubVertex, firstSubVertex+numSubVertices)); 3057efa14ee0SMatthew G Knepley for (v = 0; v < numSubVertices; ++v) { 3058efa14ee0SMatthew G Knepley const PetscInt vertex = subVertices[v]; 3059efa14ee0SMatthew G Knepley const PetscInt subvertex = firstSubVertex+v; 3060efa14ee0SMatthew G Knepley PetscInt dof; 3061efa14ee0SMatthew G Knepley 30629566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(coordSection, vertex, &dof)); 30639566063dSJacob Faibussowitsch PetscCall(PetscSectionSetDof(subCoordSection, subvertex, dof)); 30649566063dSJacob Faibussowitsch PetscCall(PetscSectionSetFieldDof(subCoordSection, subvertex, 0, dof)); 3065e6ccafaeSMatthew G Knepley } 30669566063dSJacob Faibussowitsch PetscCall(PetscSectionSetUp(subCoordSection)); 30679566063dSJacob Faibussowitsch PetscCall(PetscSectionGetStorageSize(subCoordSection, &coordSize)); 30689566063dSJacob Faibussowitsch PetscCall(VecCreate(PETSC_COMM_SELF, &subCoordinates)); 30699566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)coordinates,&name)); 30709566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)subCoordinates,name)); 30719566063dSJacob Faibussowitsch PetscCall(VecSetSizes(subCoordinates, coordSize, PETSC_DETERMINE)); 30729566063dSJacob Faibussowitsch PetscCall(VecSetType(subCoordinates,VECSTANDARD)); 3073830e53efSMatthew G. Knepley if (coordSize) { 30749566063dSJacob Faibussowitsch PetscCall(VecGetArray(coordinates, &coords)); 30759566063dSJacob Faibussowitsch PetscCall(VecGetArray(subCoordinates, &subCoords)); 3076efa14ee0SMatthew G Knepley for (v = 0; v < numSubVertices; ++v) { 3077efa14ee0SMatthew G Knepley const PetscInt vertex = subVertices[v]; 3078efa14ee0SMatthew G Knepley const PetscInt subvertex = firstSubVertex+v; 3079efa14ee0SMatthew G Knepley PetscInt dof, off, sdof, soff, d; 3080e6ccafaeSMatthew G Knepley 30819566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(coordSection, vertex, &dof)); 30829566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(coordSection, vertex, &off)); 30839566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(subCoordSection, subvertex, &sdof)); 30849566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(subCoordSection, subvertex, &soff)); 308508401ef6SPierre Jolivet PetscCheck(dof == sdof,comm, PETSC_ERR_PLIB, "Coordinate dimension %d on subvertex %d, vertex %d should be %d", sdof, subvertex, vertex, dof); 3086e6ccafaeSMatthew G Knepley for (d = 0; d < dof; ++d) subCoords[soff+d] = coords[off+d]; 3087e6ccafaeSMatthew G Knepley } 30889566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(coordinates, &coords)); 30899566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(subCoordinates, &subCoords)); 30903b399e24SMatthew G. Knepley } 30919566063dSJacob Faibussowitsch PetscCall(DMSetCoordinatesLocal(subdm, subCoordinates)); 30929566063dSJacob Faibussowitsch PetscCall(VecDestroy(&subCoordinates)); 3093e6ccafaeSMatthew G Knepley } 3094efa14ee0SMatthew G Knepley /* Cleanup */ 30959566063dSJacob Faibussowitsch if (subvertexIS) PetscCall(ISRestoreIndices(subvertexIS, &subVertices)); 30969566063dSJacob Faibussowitsch PetscCall(ISDestroy(&subvertexIS)); 30979566063dSJacob Faibussowitsch if (subcellIS) PetscCall(ISRestoreIndices(subcellIS, &subCells)); 30989566063dSJacob Faibussowitsch PetscCall(ISDestroy(&subcellIS)); 3099e6ccafaeSMatthew G Knepley PetscFunctionReturn(0); 3100e6ccafaeSMatthew G Knepley } 3101e6ccafaeSMatthew G Knepley 3102d0609cedSBarry Smith /* TODO: Fix this to properly propogate up error conditions it may find */ 31039fbee547SJacob Faibussowitsch static inline PetscInt DMPlexFilterPoint_Internal(PetscInt point, PetscInt firstSubPoint, PetscInt numSubPoints, const PetscInt subPoints[]) 31043982b651SMatthew G. Knepley { 31053982b651SMatthew G. Knepley PetscInt subPoint; 31063982b651SMatthew G. Knepley PetscErrorCode ierr; 31073982b651SMatthew G. Knepley 3108d0609cedSBarry Smith ierr = PetscFindInt(point, numSubPoints, subPoints, &subPoint); if (ierr) return -1; 31093982b651SMatthew G. Knepley return subPoint < 0 ? subPoint : firstSubPoint+subPoint; 31103982b651SMatthew G. Knepley } 31113982b651SMatthew G. Knepley 3112212103e5SMatthew Knepley static PetscErrorCode DMPlexFilterLabels_Internal(DM dm, const PetscInt numSubPoints[], const PetscInt *subpoints[], const PetscInt firstSubPoint[], DM subdm) 3113212103e5SMatthew Knepley { 3114212103e5SMatthew Knepley PetscInt Nl, l, d; 3115212103e5SMatthew Knepley 3116212103e5SMatthew Knepley PetscFunctionBegin; 31179566063dSJacob Faibussowitsch PetscCall(DMGetNumLabels(dm, &Nl)); 3118212103e5SMatthew Knepley for (l = 0; l < Nl; ++l) { 3119212103e5SMatthew Knepley DMLabel label, newlabel; 3120212103e5SMatthew Knepley const char *lname; 3121d56405f8SMatthew G. Knepley PetscBool isDepth, isDim, isCelltype, isVTK; 3122212103e5SMatthew Knepley IS valueIS; 3123212103e5SMatthew Knepley const PetscInt *values; 3124212103e5SMatthew Knepley PetscInt Nv, v; 3125212103e5SMatthew Knepley 31269566063dSJacob Faibussowitsch PetscCall(DMGetLabelName(dm, l, &lname)); 31279566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(lname, "depth", &isDepth)); 31289566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(lname, "dim", &isDim)); 31299566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(lname, "celltype", &isCelltype)); 31309566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(lname, "vtk", &isVTK)); 3131d56405f8SMatthew G. Knepley if (isDepth || isDim || isCelltype || isVTK) continue; 31329566063dSJacob Faibussowitsch PetscCall(DMCreateLabel(subdm, lname)); 31339566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, lname, &label)); 31349566063dSJacob Faibussowitsch PetscCall(DMGetLabel(subdm, lname, &newlabel)); 31359566063dSJacob Faibussowitsch PetscCall(DMLabelGetDefaultValue(label, &v)); 31369566063dSJacob Faibussowitsch PetscCall(DMLabelSetDefaultValue(newlabel, v)); 31379566063dSJacob Faibussowitsch PetscCall(DMLabelGetValueIS(label, &valueIS)); 31389566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(valueIS, &Nv)); 31399566063dSJacob Faibussowitsch PetscCall(ISGetIndices(valueIS, &values)); 3140212103e5SMatthew Knepley for (v = 0; v < Nv; ++v) { 3141212103e5SMatthew Knepley IS pointIS; 3142212103e5SMatthew Knepley const PetscInt *points; 3143212103e5SMatthew Knepley PetscInt Np, p; 3144212103e5SMatthew Knepley 31459566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(label, values[v], &pointIS)); 31469566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(pointIS, &Np)); 31479566063dSJacob Faibussowitsch PetscCall(ISGetIndices(pointIS, &points)); 3148212103e5SMatthew Knepley for (p = 0; p < Np; ++p) { 3149212103e5SMatthew Knepley const PetscInt point = points[p]; 3150212103e5SMatthew Knepley PetscInt subp; 3151212103e5SMatthew Knepley 31529566063dSJacob Faibussowitsch PetscCall(DMPlexGetPointDepth(dm, point, &d)); 3153212103e5SMatthew Knepley subp = DMPlexFilterPoint_Internal(point, firstSubPoint[d], numSubPoints[d], subpoints[d]); 31549566063dSJacob Faibussowitsch if (subp >= 0) PetscCall(DMLabelSetValue(newlabel, subp, values[v])); 3155212103e5SMatthew Knepley } 31569566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(pointIS, &points)); 31579566063dSJacob Faibussowitsch PetscCall(ISDestroy(&pointIS)); 3158212103e5SMatthew Knepley } 31599566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(valueIS, &values)); 31609566063dSJacob Faibussowitsch PetscCall(ISDestroy(&valueIS)); 3161212103e5SMatthew Knepley } 3162212103e5SMatthew Knepley PetscFunctionReturn(0); 3163212103e5SMatthew Knepley } 3164212103e5SMatthew Knepley 3165158acfadSMatthew G. Knepley static PetscErrorCode DMPlexCreateSubmeshGeneric_Interpolated(DM dm, DMLabel label, PetscInt value, PetscBool markedFaces, PetscBool isCohesive, PetscInt cellHeight, DM subdm) 3166e6ccafaeSMatthew G Knepley { 316782f516ccSBarry Smith MPI_Comm comm; 316853156dfcSMatthew G. Knepley DMLabel subpointMap; 3169efa14ee0SMatthew G Knepley IS *subpointIS; 3170efa14ee0SMatthew G Knepley const PetscInt **subpoints; 31713982b651SMatthew G. Knepley PetscInt *numSubPoints, *firstSubPoint, *coneNew, *orntNew; 3172412e9a14SMatthew G. Knepley PetscInt totSubPoints = 0, maxConeSize, dim, p, d, v; 31730d366550SMatthew G. Knepley PetscMPIInt rank; 3174e6ccafaeSMatthew G Knepley 3175e6ccafaeSMatthew G Knepley PetscFunctionBegin; 31769566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)dm,&comm)); 31779566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 3178efa14ee0SMatthew G Knepley /* Create subpointMap which marks the submesh */ 31799566063dSJacob Faibussowitsch PetscCall(DMLabelCreate(PETSC_COMM_SELF, "subpoint_map", &subpointMap)); 31809566063dSJacob Faibussowitsch PetscCall(DMPlexSetSubpointMap(subdm, subpointMap)); 3181bec263e5SMatthew G. Knepley if (cellHeight) { 31829566063dSJacob Faibussowitsch if (isCohesive) PetscCall(DMPlexMarkCohesiveSubmesh_Interpolated(dm, label, value, subpointMap, subdm)); 31839566063dSJacob Faibussowitsch else PetscCall(DMPlexMarkSubmesh_Interpolated(dm, label, value, markedFaces, subpointMap, subdm)); 3184bec263e5SMatthew G. Knepley } else { 3185bec263e5SMatthew G. Knepley DMLabel depth; 3186bec263e5SMatthew G. Knepley IS pointIS; 3187bec263e5SMatthew G. Knepley const PetscInt *points; 3188b85c8bf9SMatthew G. Knepley PetscInt numPoints=0; 3189bec263e5SMatthew G. Knepley 31909566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthLabel(dm, &depth)); 31919566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(label, value, &pointIS)); 3192b85c8bf9SMatthew G. Knepley if (pointIS) { 31939566063dSJacob Faibussowitsch PetscCall(ISGetIndices(pointIS, &points)); 31949566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(pointIS, &numPoints)); 3195b85c8bf9SMatthew G. Knepley } 3196bec263e5SMatthew G. Knepley for (p = 0; p < numPoints; ++p) { 3197bec263e5SMatthew G. Knepley PetscInt *closure = NULL; 3198bec263e5SMatthew G. Knepley PetscInt closureSize, c, pdim; 3199bec263e5SMatthew G. Knepley 32009566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(dm, points[p], PETSC_TRUE, &closureSize, &closure)); 3201bec263e5SMatthew G. Knepley for (c = 0; c < closureSize*2; c += 2) { 32029566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(depth, closure[c], &pdim)); 32039566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(subpointMap, closure[c], pdim)); 3204bec263e5SMatthew G. Knepley } 32059566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dm, points[p], PETSC_TRUE, &closureSize, &closure)); 3206bec263e5SMatthew G. Knepley } 32079566063dSJacob Faibussowitsch if (pointIS) PetscCall(ISRestoreIndices(pointIS, &points)); 32089566063dSJacob Faibussowitsch PetscCall(ISDestroy(&pointIS)); 3209bec263e5SMatthew G. Knepley } 3210efa14ee0SMatthew G Knepley /* Setup chart */ 32119566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 32129566063dSJacob Faibussowitsch PetscCall(PetscMalloc4(dim+1,&numSubPoints,dim+1,&firstSubPoint,dim+1,&subpointIS,dim+1,&subpoints)); 3213e6ccafaeSMatthew G Knepley for (d = 0; d <= dim; ++d) { 32149566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumSize(subpointMap, d, &numSubPoints[d])); 3215e6ccafaeSMatthew G Knepley totSubPoints += numSubPoints[d]; 3216e6ccafaeSMatthew G Knepley } 32179566063dSJacob Faibussowitsch PetscCall(DMPlexSetChart(subdm, 0, totSubPoints)); 32189566063dSJacob Faibussowitsch PetscCall(DMPlexSetVTKCellHeight(subdm, cellHeight)); 3219e6ccafaeSMatthew G Knepley /* Set cone sizes */ 3220e6ccafaeSMatthew G Knepley firstSubPoint[dim] = 0; 3221e6ccafaeSMatthew G Knepley firstSubPoint[0] = firstSubPoint[dim] + numSubPoints[dim]; 3222e6ccafaeSMatthew G Knepley if (dim > 1) {firstSubPoint[dim-1] = firstSubPoint[0] + numSubPoints[0];} 3223e6ccafaeSMatthew G Knepley if (dim > 2) {firstSubPoint[dim-2] = firstSubPoint[dim-1] + numSubPoints[dim-1];} 3224e6ccafaeSMatthew G Knepley for (d = 0; d <= dim; ++d) { 32259566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(subpointMap, d, &subpointIS[d])); 32269566063dSJacob Faibussowitsch if (subpointIS[d]) PetscCall(ISGetIndices(subpointIS[d], &subpoints[d])); 3227e6ccafaeSMatthew G Knepley } 3228412e9a14SMatthew G. Knepley /* We do not want this label automatically computed, instead we compute it here */ 32299566063dSJacob Faibussowitsch PetscCall(DMCreateLabel(subdm, "celltype")); 3230e6ccafaeSMatthew G Knepley for (d = 0; d <= dim; ++d) { 3231e6ccafaeSMatthew G Knepley for (p = 0; p < numSubPoints[d]; ++p) { 3232e6ccafaeSMatthew G Knepley const PetscInt point = subpoints[d][p]; 3233e6ccafaeSMatthew G Knepley const PetscInt subpoint = firstSubPoint[d] + p; 3234e6ccafaeSMatthew G Knepley const PetscInt *cone; 323515100a53SVaclav Hapla PetscInt coneSize; 3236e6ccafaeSMatthew G Knepley 32379566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, point, &coneSize)); 3238bec263e5SMatthew G. Knepley if (cellHeight && (d == dim)) { 323915100a53SVaclav Hapla PetscInt coneSizeNew, c, val; 324015100a53SVaclav Hapla 32419566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, point, &cone)); 3242e6ccafaeSMatthew G Knepley for (c = 0, coneSizeNew = 0; c < coneSize; ++c) { 32439566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(subpointMap, cone[c], &val)); 3244e6ccafaeSMatthew G Knepley if (val >= 0) coneSizeNew++; 3245e6ccafaeSMatthew G Knepley } 32469566063dSJacob Faibussowitsch PetscCall(DMPlexSetConeSize(subdm, subpoint, coneSizeNew)); 32479566063dSJacob Faibussowitsch PetscCall(DMPlexSetCellType(subdm, subpoint, DM_POLYTOPE_FV_GHOST)); 324815100a53SVaclav Hapla } else { 324915100a53SVaclav Hapla DMPolytopeType ct; 325015100a53SVaclav Hapla 325115100a53SVaclav Hapla PetscCall(DMPlexSetConeSize(subdm, subpoint, coneSize)); 325215100a53SVaclav Hapla PetscCall(DMPlexGetCellType(dm, point, &ct)); 325315100a53SVaclav Hapla PetscCall(DMPlexSetCellType(subdm, subpoint, ct)); 3254e6ccafaeSMatthew G Knepley } 3255e6ccafaeSMatthew G Knepley } 3256e6ccafaeSMatthew G Knepley } 32579566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&subpointMap)); 32589566063dSJacob Faibussowitsch PetscCall(DMSetUp(subdm)); 3259e6ccafaeSMatthew G Knepley /* Set cones */ 32609566063dSJacob Faibussowitsch PetscCall(DMPlexGetMaxSizes(dm, &maxConeSize, NULL)); 32619566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(maxConeSize,&coneNew,maxConeSize,&orntNew)); 3262e6ccafaeSMatthew G Knepley for (d = 0; d <= dim; ++d) { 3263e6ccafaeSMatthew G Knepley for (p = 0; p < numSubPoints[d]; ++p) { 3264e6ccafaeSMatthew G Knepley const PetscInt point = subpoints[d][p]; 3265e6ccafaeSMatthew G Knepley const PetscInt subpoint = firstSubPoint[d] + p; 32660e49e2e2SMatthew G. Knepley const PetscInt *cone, *ornt; 32670d366550SMatthew G. Knepley PetscInt coneSize, subconeSize, coneSizeNew, c, subc, fornt = 0; 3268e6ccafaeSMatthew G Knepley 32690d366550SMatthew G. Knepley if (d == dim-1) { 32700d366550SMatthew G. Knepley const PetscInt *support, *cone, *ornt; 32710d366550SMatthew G. Knepley PetscInt supportSize, coneSize, s, subc; 32720d366550SMatthew G. Knepley 32739566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(dm, point, &support)); 32749566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dm, point, &supportSize)); 32750d366550SMatthew G. Knepley for (s = 0; s < supportSize; ++s) { 3276412e9a14SMatthew G. Knepley PetscBool isHybrid; 3277412e9a14SMatthew G. Knepley 32789566063dSJacob Faibussowitsch PetscCall(DMPlexCellIsHybrid_Internal(dm, support[s], &isHybrid)); 3279412e9a14SMatthew G. Knepley if (!isHybrid) continue; 32809566063dSJacob Faibussowitsch PetscCall(PetscFindInt(support[s], numSubPoints[d+1], subpoints[d+1], &subc)); 32810d366550SMatthew G. Knepley if (subc >= 0) { 32820d366550SMatthew G. Knepley const PetscInt ccell = subpoints[d+1][subc]; 32830d366550SMatthew G. Knepley 32849566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, ccell, &cone)); 32859566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, ccell, &coneSize)); 32869566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeOrientation(dm, ccell, &ornt)); 32870d366550SMatthew G. Knepley for (c = 0; c < coneSize; ++c) { 32880d366550SMatthew G. Knepley if (cone[c] == point) { 32890d366550SMatthew G. Knepley fornt = ornt[c]; 32900d366550SMatthew G. Knepley break; 32910d366550SMatthew G. Knepley } 32920d366550SMatthew G. Knepley } 32930d366550SMatthew G. Knepley break; 32940d366550SMatthew G. Knepley } 32950d366550SMatthew G. Knepley } 32960d366550SMatthew G. Knepley } 32979566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, point, &coneSize)); 32989566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(subdm, subpoint, &subconeSize)); 32999566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, point, &cone)); 33009566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeOrientation(dm, point, &ornt)); 3301e6ccafaeSMatthew G Knepley for (c = 0, coneSizeNew = 0; c < coneSize; ++c) { 33029566063dSJacob Faibussowitsch PetscCall(PetscFindInt(cone[c], numSubPoints[d-1], subpoints[d-1], &subc)); 330301a2673eSMatthew G. Knepley if (subc >= 0) { 330401a2673eSMatthew G. Knepley coneNew[coneSizeNew] = firstSubPoint[d-1] + subc; 33053982b651SMatthew G. Knepley orntNew[coneSizeNew] = ornt[c]; 330601a2673eSMatthew G. Knepley ++coneSizeNew; 330701a2673eSMatthew G. Knepley } 3308e6ccafaeSMatthew G Knepley } 330908401ef6SPierre Jolivet PetscCheck(coneSizeNew == subconeSize,comm, PETSC_ERR_PLIB, "Number of cone points located %d does not match subcone size %d", coneSizeNew, subconeSize); 33109566063dSJacob Faibussowitsch PetscCall(DMPlexSetCone(subdm, subpoint, coneNew)); 33119566063dSJacob Faibussowitsch PetscCall(DMPlexSetConeOrientation(subdm, subpoint, orntNew)); 33129566063dSJacob Faibussowitsch if (fornt < 0) PetscCall(DMPlexOrientPoint(subdm, subpoint, fornt)); 3313e6ccafaeSMatthew G Knepley } 3314e6ccafaeSMatthew G Knepley } 33159566063dSJacob Faibussowitsch PetscCall(PetscFree2(coneNew,orntNew)); 33169566063dSJacob Faibussowitsch PetscCall(DMPlexSymmetrize(subdm)); 33179566063dSJacob Faibussowitsch PetscCall(DMPlexStratify(subdm)); 3318e6ccafaeSMatthew G Knepley /* Build coordinates */ 3319e6ccafaeSMatthew G Knepley { 3320e6ccafaeSMatthew G Knepley PetscSection coordSection, subCoordSection; 3321e6ccafaeSMatthew G Knepley Vec coordinates, subCoordinates; 3322e6ccafaeSMatthew G Knepley PetscScalar *coords, *subCoords; 3323c0e8cf5fSMatthew G. Knepley PetscInt cdim, numComp, coordSize; 332424640c55SToby Isaac const char *name; 3325e6ccafaeSMatthew G Knepley 33269566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDim(dm, &cdim)); 33279566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateSection(dm, &coordSection)); 33289566063dSJacob Faibussowitsch PetscCall(DMGetCoordinatesLocal(dm, &coordinates)); 33299566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateSection(subdm, &subCoordSection)); 33309566063dSJacob Faibussowitsch PetscCall(PetscSectionSetNumFields(subCoordSection, 1)); 33319566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldComponents(coordSection, 0, &numComp)); 33329566063dSJacob Faibussowitsch PetscCall(PetscSectionSetFieldComponents(subCoordSection, 0, numComp)); 33339566063dSJacob Faibussowitsch PetscCall(PetscSectionSetChart(subCoordSection, firstSubPoint[0], firstSubPoint[0]+numSubPoints[0])); 3334e6ccafaeSMatthew G Knepley for (v = 0; v < numSubPoints[0]; ++v) { 3335e6ccafaeSMatthew G Knepley const PetscInt vertex = subpoints[0][v]; 3336e6ccafaeSMatthew G Knepley const PetscInt subvertex = firstSubPoint[0]+v; 3337e6ccafaeSMatthew G Knepley PetscInt dof; 3338e6ccafaeSMatthew G Knepley 33399566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(coordSection, vertex, &dof)); 33409566063dSJacob Faibussowitsch PetscCall(PetscSectionSetDof(subCoordSection, subvertex, dof)); 33419566063dSJacob Faibussowitsch PetscCall(PetscSectionSetFieldDof(subCoordSection, subvertex, 0, dof)); 3342e6ccafaeSMatthew G Knepley } 33439566063dSJacob Faibussowitsch PetscCall(PetscSectionSetUp(subCoordSection)); 33449566063dSJacob Faibussowitsch PetscCall(PetscSectionGetStorageSize(subCoordSection, &coordSize)); 33459566063dSJacob Faibussowitsch PetscCall(VecCreate(PETSC_COMM_SELF, &subCoordinates)); 33469566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)coordinates,&name)); 33479566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)subCoordinates,name)); 33489566063dSJacob Faibussowitsch PetscCall(VecSetSizes(subCoordinates, coordSize, PETSC_DETERMINE)); 33499566063dSJacob Faibussowitsch PetscCall(VecSetBlockSize(subCoordinates, cdim)); 33509566063dSJacob Faibussowitsch PetscCall(VecSetType(subCoordinates,VECSTANDARD)); 33519566063dSJacob Faibussowitsch PetscCall(VecGetArray(coordinates, &coords)); 33529566063dSJacob Faibussowitsch PetscCall(VecGetArray(subCoordinates, &subCoords)); 3353e6ccafaeSMatthew G Knepley for (v = 0; v < numSubPoints[0]; ++v) { 3354e6ccafaeSMatthew G Knepley const PetscInt vertex = subpoints[0][v]; 3355e6ccafaeSMatthew G Knepley const PetscInt subvertex = firstSubPoint[0]+v; 3356e6ccafaeSMatthew G Knepley PetscInt dof, off, sdof, soff, d; 3357e6ccafaeSMatthew G Knepley 33589566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(coordSection, vertex, &dof)); 33599566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(coordSection, vertex, &off)); 33609566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(subCoordSection, subvertex, &sdof)); 33619566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(subCoordSection, subvertex, &soff)); 336208401ef6SPierre Jolivet PetscCheck(dof == sdof,comm, PETSC_ERR_PLIB, "Coordinate dimension %d on subvertex %d, vertex %d should be %d", sdof, subvertex, vertex, dof); 3363efa14ee0SMatthew G Knepley for (d = 0; d < dof; ++d) subCoords[soff+d] = coords[off+d]; 3364e6ccafaeSMatthew G Knepley } 33659566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(coordinates, &coords)); 33669566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(subCoordinates, &subCoords)); 33679566063dSJacob Faibussowitsch PetscCall(DMSetCoordinatesLocal(subdm, subCoordinates)); 33689566063dSJacob Faibussowitsch PetscCall(VecDestroy(&subCoordinates)); 3369e6ccafaeSMatthew G Knepley } 33703982b651SMatthew G. Knepley /* Build SF: We need this complexity because subpoints might not be selected on the owning process */ 33713982b651SMatthew G. Knepley { 33723982b651SMatthew G. Knepley PetscSF sfPoint, sfPointSub; 33733982b651SMatthew G. Knepley IS subpIS; 33743982b651SMatthew G. Knepley const PetscSFNode *remotePoints; 33753982b651SMatthew G. Knepley PetscSFNode *sremotePoints, *newLocalPoints, *newOwners; 33763982b651SMatthew G. Knepley const PetscInt *localPoints, *subpoints; 33773982b651SMatthew G. Knepley PetscInt *slocalPoints; 33783982b651SMatthew G. Knepley PetscInt numRoots, numLeaves, numSubpoints = 0, numSubroots, numSubleaves = 0, l, sl, ll, pStart, pEnd, p; 33793982b651SMatthew G. Knepley PetscMPIInt rank; 33803982b651SMatthew G. Knepley 33819566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject) dm), &rank)); 33829566063dSJacob Faibussowitsch PetscCall(DMGetPointSF(dm, &sfPoint)); 33839566063dSJacob Faibussowitsch PetscCall(DMGetPointSF(subdm, &sfPointSub)); 33849566063dSJacob Faibussowitsch PetscCall(DMPlexGetChart(dm, &pStart, &pEnd)); 33859566063dSJacob Faibussowitsch PetscCall(DMPlexGetChart(subdm, NULL, &numSubroots)); 33869566063dSJacob Faibussowitsch PetscCall(DMPlexGetSubpointIS(subdm, &subpIS)); 33873982b651SMatthew G. Knepley if (subpIS) { 33889566063dSJacob Faibussowitsch PetscCall(ISGetIndices(subpIS, &subpoints)); 33899566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(subpIS, &numSubpoints)); 33903982b651SMatthew G. Knepley } 33919566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(sfPoint, &numRoots, &numLeaves, &localPoints, &remotePoints)); 33923982b651SMatthew G. Knepley if (numRoots >= 0) { 33939566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(pEnd-pStart,&newLocalPoints,numRoots,&newOwners)); 33943982b651SMatthew G. Knepley for (p = 0; p < pEnd-pStart; ++p) { 33953982b651SMatthew G. Knepley newLocalPoints[p].rank = -2; 33963982b651SMatthew G. Knepley newLocalPoints[p].index = -2; 33973982b651SMatthew G. Knepley } 33983982b651SMatthew G. Knepley /* Set subleaves */ 33993982b651SMatthew G. Knepley for (l = 0; l < numLeaves; ++l) { 34003982b651SMatthew G. Knepley const PetscInt point = localPoints[l]; 34013982b651SMatthew G. Knepley const PetscInt subpoint = DMPlexFilterPoint_Internal(point, 0, numSubpoints, subpoints); 34023982b651SMatthew G. Knepley 34033982b651SMatthew G. Knepley if (subpoint < 0) continue; 34043982b651SMatthew G. Knepley newLocalPoints[point-pStart].rank = rank; 34053982b651SMatthew G. Knepley newLocalPoints[point-pStart].index = subpoint; 34063982b651SMatthew G. Knepley ++numSubleaves; 34073982b651SMatthew G. Knepley } 34083982b651SMatthew G. Knepley /* Must put in owned subpoints */ 34093982b651SMatthew G. Knepley for (p = pStart; p < pEnd; ++p) { 34103982b651SMatthew G. Knepley const PetscInt subpoint = DMPlexFilterPoint_Internal(p, 0, numSubpoints, subpoints); 34113982b651SMatthew G. Knepley 34123982b651SMatthew G. Knepley if (subpoint < 0) { 34133982b651SMatthew G. Knepley newOwners[p-pStart].rank = -3; 34143982b651SMatthew G. Knepley newOwners[p-pStart].index = -3; 34153982b651SMatthew G. Knepley } else { 34163982b651SMatthew G. Knepley newOwners[p-pStart].rank = rank; 34173982b651SMatthew G. Knepley newOwners[p-pStart].index = subpoint; 34183982b651SMatthew G. Knepley } 34193982b651SMatthew G. Knepley } 34209566063dSJacob Faibussowitsch PetscCall(PetscSFReduceBegin(sfPoint, MPIU_2INT, newLocalPoints, newOwners, MPI_MAXLOC)); 34219566063dSJacob Faibussowitsch PetscCall(PetscSFReduceEnd(sfPoint, MPIU_2INT, newLocalPoints, newOwners, MPI_MAXLOC)); 34229566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(sfPoint, MPIU_2INT, newOwners, newLocalPoints,MPI_REPLACE)); 34239566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(sfPoint, MPIU_2INT, newOwners, newLocalPoints,MPI_REPLACE)); 34249566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(numSubleaves, &slocalPoints)); 34259566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(numSubleaves, &sremotePoints)); 34263982b651SMatthew G. Knepley for (l = 0, sl = 0, ll = 0; l < numLeaves; ++l) { 34273982b651SMatthew G. Knepley const PetscInt point = localPoints[l]; 34283982b651SMatthew G. Knepley const PetscInt subpoint = DMPlexFilterPoint_Internal(point, 0, numSubpoints, subpoints); 34293982b651SMatthew G. Knepley 34303982b651SMatthew G. Knepley if (subpoint < 0) continue; 34313982b651SMatthew G. Knepley if (newLocalPoints[point].rank == rank) {++ll; continue;} 34323982b651SMatthew G. Knepley slocalPoints[sl] = subpoint; 34333982b651SMatthew G. Knepley sremotePoints[sl].rank = newLocalPoints[point].rank; 34343982b651SMatthew G. Knepley sremotePoints[sl].index = newLocalPoints[point].index; 343508401ef6SPierre Jolivet PetscCheck(sremotePoints[sl].rank >= 0,PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid remote rank for local point %d", point); 343608401ef6SPierre Jolivet PetscCheck(sremotePoints[sl].index >= 0,PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid remote subpoint for local point %d", point); 34373982b651SMatthew G. Knepley ++sl; 34383982b651SMatthew G. Knepley } 34392c71b3e2SJacob Faibussowitsch PetscCheckFalse(sl + ll != numSubleaves,PETSC_COMM_SELF, PETSC_ERR_PLIB, "Mismatch in number of subleaves %d + %d != %d", sl, ll, numSubleaves); 34409566063dSJacob Faibussowitsch PetscCall(PetscFree2(newLocalPoints,newOwners)); 34419566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(sfPointSub, numSubroots, sl, slocalPoints, PETSC_OWN_POINTER, sremotePoints, PETSC_OWN_POINTER)); 34423982b651SMatthew G. Knepley } 34433982b651SMatthew G. Knepley if (subpIS) { 34449566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(subpIS, &subpoints)); 34453982b651SMatthew G. Knepley } 34463982b651SMatthew G. Knepley } 3447212103e5SMatthew Knepley /* Filter labels */ 34489566063dSJacob Faibussowitsch PetscCall(DMPlexFilterLabels_Internal(dm, numSubPoints, subpoints, firstSubPoint, subdm)); 3449efa14ee0SMatthew G Knepley /* Cleanup */ 3450e6ccafaeSMatthew G Knepley for (d = 0; d <= dim; ++d) { 34519566063dSJacob Faibussowitsch if (subpointIS[d]) PetscCall(ISRestoreIndices(subpointIS[d], &subpoints[d])); 34529566063dSJacob Faibussowitsch PetscCall(ISDestroy(&subpointIS[d])); 3453e6ccafaeSMatthew G Knepley } 34549566063dSJacob Faibussowitsch PetscCall(PetscFree4(numSubPoints,firstSubPoint,subpointIS,subpoints)); 3455e6ccafaeSMatthew G Knepley PetscFunctionReturn(0); 3456e6ccafaeSMatthew G Knepley } 3457e6ccafaeSMatthew G Knepley 3458158acfadSMatthew G. Knepley static PetscErrorCode DMPlexCreateSubmesh_Interpolated(DM dm, DMLabel vertexLabel, PetscInt value, PetscBool markedFaces, DM subdm) 34593982b651SMatthew G. Knepley { 34603982b651SMatthew G. Knepley PetscFunctionBegin; 34619566063dSJacob Faibussowitsch PetscCall(DMPlexCreateSubmeshGeneric_Interpolated(dm, vertexLabel, value, markedFaces, PETSC_FALSE, 1, subdm)); 34623982b651SMatthew G. Knepley PetscFunctionReturn(0); 34633982b651SMatthew G. Knepley } 34643982b651SMatthew G. Knepley 3465d0fa310fSMatthew G. Knepley /*@ 3466e6ccafaeSMatthew G Knepley DMPlexCreateSubmesh - Extract a hypersurface from the mesh using vertices defined by a label 3467e6ccafaeSMatthew G Knepley 3468e6ccafaeSMatthew G Knepley Input Parameters: 3469e6ccafaeSMatthew G Knepley + dm - The original mesh 3470158acfadSMatthew G. Knepley . vertexLabel - The DMLabel marking points contained in the surface 3471158acfadSMatthew G. Knepley . value - The label value to use 3472158acfadSMatthew G. Knepley - markedFaces - PETSC_TRUE if surface faces are marked in addition to vertices, PETSC_FALSE if only vertices are marked 3473e6ccafaeSMatthew G Knepley 3474e6ccafaeSMatthew G Knepley Output Parameter: 3475e6ccafaeSMatthew G Knepley . subdm - The surface mesh 3476e6ccafaeSMatthew G Knepley 3477e6ccafaeSMatthew G Knepley Note: This function produces a DMLabel mapping original points in the submesh to their depth. This can be obtained using DMPlexGetSubpointMap(). 3478e6ccafaeSMatthew G Knepley 3479e6ccafaeSMatthew G Knepley Level: developer 3480e6ccafaeSMatthew G Knepley 3481c58f1c22SToby Isaac .seealso: DMPlexGetSubpointMap(), DMGetLabel(), DMLabelSetValue() 3482830e53efSMatthew G. Knepley @*/ 3483158acfadSMatthew G. Knepley PetscErrorCode DMPlexCreateSubmesh(DM dm, DMLabel vertexLabel, PetscInt value, PetscBool markedFaces, DM *subdm) 3484e6ccafaeSMatthew G Knepley { 3485827c4036SVaclav Hapla DMPlexInterpolatedFlag interpolated; 3486827c4036SVaclav Hapla PetscInt dim, cdim; 3487e6ccafaeSMatthew G Knepley 3488e6ccafaeSMatthew G Knepley PetscFunctionBegin; 3489e6ccafaeSMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 3490064a246eSJacob Faibussowitsch PetscValidPointer(subdm, 5); 34919566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 34929566063dSJacob Faibussowitsch PetscCall(DMCreate(PetscObjectComm((PetscObject)dm), subdm)); 34939566063dSJacob Faibussowitsch PetscCall(DMSetType(*subdm, DMPLEX)); 34949566063dSJacob Faibussowitsch PetscCall(DMSetDimension(*subdm, dim-1)); 34959566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDim(dm, &cdim)); 34969566063dSJacob Faibussowitsch PetscCall(DMSetCoordinateDim(*subdm, cdim)); 34979566063dSJacob Faibussowitsch PetscCall(DMPlexIsInterpolated(dm, &interpolated)); 349808401ef6SPierre Jolivet PetscCheck(interpolated != DMPLEX_INTERPOLATED_PARTIAL,PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Not for partially interpolated meshes"); 3499827c4036SVaclav Hapla if (interpolated) { 35009566063dSJacob Faibussowitsch PetscCall(DMPlexCreateSubmesh_Interpolated(dm, vertexLabel, value, markedFaces, *subdm)); 3501e6ccafaeSMatthew G Knepley } else { 35029566063dSJacob Faibussowitsch PetscCall(DMPlexCreateSubmesh_Uninterpolated(dm, vertexLabel, value, *subdm)); 3503e6ccafaeSMatthew G Knepley } 35049566063dSJacob Faibussowitsch PetscCall(DMPlexCopy_Internal(dm, PETSC_TRUE, *subdm)); 3505e6ccafaeSMatthew G Knepley PetscFunctionReturn(0); 3506e6ccafaeSMatthew G Knepley } 3507e6ccafaeSMatthew G Knepley 350827c04023SMatthew G. Knepley static PetscErrorCode DMPlexCreateCohesiveSubmesh_Uninterpolated(DM dm, PetscBool hasLagrange, const char label[], PetscInt value, DM subdm) 3509766ab985SMatthew G. Knepley { 3510766ab985SMatthew G. Knepley MPI_Comm comm; 3511766ab985SMatthew G. Knepley DMLabel subpointMap; 3512766ab985SMatthew G. Knepley IS subvertexIS; 3513766ab985SMatthew G. Knepley const PetscInt *subVertices; 3514fed694aaSMatthew G. Knepley PetscInt numSubVertices, firstSubVertex, numSubCells, *subCells = NULL; 3515766ab985SMatthew G. Knepley PetscInt *subface, maxConeSize, numSubFaces, firstSubFace, newFacePoint, nFV; 3516412e9a14SMatthew G. Knepley PetscInt c, f; 3517766ab985SMatthew G. Knepley 3518766ab985SMatthew G. Knepley PetscFunctionBegin; 35199566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)dm, &comm)); 3520766ab985SMatthew G. Knepley /* Create subpointMap which marks the submesh */ 35219566063dSJacob Faibussowitsch PetscCall(DMLabelCreate(PETSC_COMM_SELF, "subpoint_map", &subpointMap)); 35229566063dSJacob Faibussowitsch PetscCall(DMPlexSetSubpointMap(subdm, subpointMap)); 35239566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&subpointMap)); 35249566063dSJacob Faibussowitsch PetscCall(DMPlexMarkCohesiveSubmesh_Uninterpolated(dm, hasLagrange, label, value, subpointMap, &numSubFaces, &nFV, &subCells, subdm)); 3525766ab985SMatthew G. Knepley /* Setup chart */ 35269566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumSize(subpointMap, 0, &numSubVertices)); 35279566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumSize(subpointMap, 2, &numSubCells)); 35289566063dSJacob Faibussowitsch PetscCall(DMPlexSetChart(subdm, 0, numSubCells+numSubFaces+numSubVertices)); 35299566063dSJacob Faibussowitsch PetscCall(DMPlexSetVTKCellHeight(subdm, 1)); 3530766ab985SMatthew G. Knepley /* Set cone sizes */ 3531766ab985SMatthew G. Knepley firstSubVertex = numSubCells; 3532766ab985SMatthew G. Knepley firstSubFace = numSubCells+numSubVertices; 3533766ab985SMatthew G. Knepley newFacePoint = firstSubFace; 35349566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(subpointMap, 0, &subvertexIS)); 35359566063dSJacob Faibussowitsch if (subvertexIS) PetscCall(ISGetIndices(subvertexIS, &subVertices)); 3536766ab985SMatthew G. Knepley for (c = 0; c < numSubCells; ++c) { 35379566063dSJacob Faibussowitsch PetscCall(DMPlexSetConeSize(subdm, c, 1)); 3538766ab985SMatthew G. Knepley } 3539766ab985SMatthew G. Knepley for (f = firstSubFace; f < firstSubFace+numSubFaces; ++f) { 35409566063dSJacob Faibussowitsch PetscCall(DMPlexSetConeSize(subdm, f, nFV)); 3541766ab985SMatthew G. Knepley } 35429566063dSJacob Faibussowitsch PetscCall(DMSetUp(subdm)); 3543766ab985SMatthew G. Knepley /* Create face cones */ 35449566063dSJacob Faibussowitsch PetscCall(DMPlexGetMaxSizes(dm, &maxConeSize, NULL)); 35459566063dSJacob Faibussowitsch PetscCall(DMGetWorkArray(subdm, maxConeSize, MPIU_INT, (void**) &subface)); 3546766ab985SMatthew G. Knepley for (c = 0; c < numSubCells; ++c) { 3547766ab985SMatthew G. Knepley const PetscInt cell = subCells[c]; 3548766ab985SMatthew G. Knepley const PetscInt subcell = c; 354987feddfdSMatthew G. Knepley const PetscInt *cone, *cells; 3550412e9a14SMatthew G. Knepley PetscBool isHybrid; 355187feddfdSMatthew G. Knepley PetscInt numCells, subVertex, p, v; 3552766ab985SMatthew G. Knepley 35539566063dSJacob Faibussowitsch PetscCall(DMPlexCellIsHybrid_Internal(dm, cell, &isHybrid)); 3554412e9a14SMatthew G. Knepley if (!isHybrid) continue; 35559566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, cell, &cone)); 355687feddfdSMatthew G. Knepley for (v = 0; v < nFV; ++v) { 35579566063dSJacob Faibussowitsch PetscCall(PetscFindInt(cone[v], numSubVertices, subVertices, &subVertex)); 355887feddfdSMatthew G. Knepley subface[v] = firstSubVertex+subVertex; 355987feddfdSMatthew G. Knepley } 35609566063dSJacob Faibussowitsch PetscCall(DMPlexSetCone(subdm, newFacePoint, subface)); 35619566063dSJacob Faibussowitsch PetscCall(DMPlexSetCone(subdm, subcell, &newFacePoint)); 35629566063dSJacob Faibussowitsch PetscCall(DMPlexGetJoin(dm, nFV, cone, &numCells, &cells)); 356327234c99SMatthew G. Knepley /* Not true in parallel 356408401ef6SPierre Jolivet PetscCheck(numCells == 2,PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Cohesive cells should separate two cells"); */ 356587feddfdSMatthew G. Knepley for (p = 0; p < numCells; ++p) { 356687feddfdSMatthew G. Knepley PetscInt negsubcell; 3567412e9a14SMatthew G. Knepley PetscBool isHybrid; 3568766ab985SMatthew G. Knepley 35699566063dSJacob Faibussowitsch PetscCall(DMPlexCellIsHybrid_Internal(dm, cells[p], &isHybrid)); 3570412e9a14SMatthew G. Knepley if (isHybrid) continue; 357187feddfdSMatthew G. Knepley /* I know this is a crap search */ 357287feddfdSMatthew G. Knepley for (negsubcell = 0; negsubcell < numSubCells; ++negsubcell) { 357387feddfdSMatthew G. Knepley if (subCells[negsubcell] == cells[p]) break; 3574766ab985SMatthew G. Knepley } 357508401ef6SPierre Jolivet PetscCheck(negsubcell != numSubCells,PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Could not find negative face neighbor for cohesive cell %d", cell); 35769566063dSJacob Faibussowitsch PetscCall(DMPlexSetCone(subdm, negsubcell, &newFacePoint)); 3577766ab985SMatthew G. Knepley } 35789566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreJoin(dm, nFV, cone, &numCells, &cells)); 357987feddfdSMatthew G. Knepley ++newFacePoint; 3580766ab985SMatthew G. Knepley } 35819566063dSJacob Faibussowitsch PetscCall(DMRestoreWorkArray(subdm, maxConeSize, MPIU_INT, (void**) &subface)); 35829566063dSJacob Faibussowitsch PetscCall(DMPlexSymmetrize(subdm)); 35839566063dSJacob Faibussowitsch PetscCall(DMPlexStratify(subdm)); 3584766ab985SMatthew G. Knepley /* Build coordinates */ 3585766ab985SMatthew G. Knepley { 3586766ab985SMatthew G. Knepley PetscSection coordSection, subCoordSection; 3587766ab985SMatthew G. Knepley Vec coordinates, subCoordinates; 3588766ab985SMatthew G. Knepley PetscScalar *coords, *subCoords; 3589c0e8cf5fSMatthew G. Knepley PetscInt cdim, numComp, coordSize, v; 359024640c55SToby Isaac const char *name; 3591766ab985SMatthew G. Knepley 35929566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDim(dm, &cdim)); 35939566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateSection(dm, &coordSection)); 35949566063dSJacob Faibussowitsch PetscCall(DMGetCoordinatesLocal(dm, &coordinates)); 35959566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateSection(subdm, &subCoordSection)); 35969566063dSJacob Faibussowitsch PetscCall(PetscSectionSetNumFields(subCoordSection, 1)); 35979566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldComponents(coordSection, 0, &numComp)); 35989566063dSJacob Faibussowitsch PetscCall(PetscSectionSetFieldComponents(subCoordSection, 0, numComp)); 35999566063dSJacob Faibussowitsch PetscCall(PetscSectionSetChart(subCoordSection, firstSubVertex, firstSubVertex+numSubVertices)); 3600766ab985SMatthew G. Knepley for (v = 0; v < numSubVertices; ++v) { 3601766ab985SMatthew G. Knepley const PetscInt vertex = subVertices[v]; 3602766ab985SMatthew G. Knepley const PetscInt subvertex = firstSubVertex+v; 3603766ab985SMatthew G. Knepley PetscInt dof; 3604766ab985SMatthew G. Knepley 36059566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(coordSection, vertex, &dof)); 36069566063dSJacob Faibussowitsch PetscCall(PetscSectionSetDof(subCoordSection, subvertex, dof)); 36079566063dSJacob Faibussowitsch PetscCall(PetscSectionSetFieldDof(subCoordSection, subvertex, 0, dof)); 3608766ab985SMatthew G. Knepley } 36099566063dSJacob Faibussowitsch PetscCall(PetscSectionSetUp(subCoordSection)); 36109566063dSJacob Faibussowitsch PetscCall(PetscSectionGetStorageSize(subCoordSection, &coordSize)); 36119566063dSJacob Faibussowitsch PetscCall(VecCreate(PETSC_COMM_SELF, &subCoordinates)); 36129566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)coordinates,&name)); 36139566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)subCoordinates,name)); 36149566063dSJacob Faibussowitsch PetscCall(VecSetSizes(subCoordinates, coordSize, PETSC_DETERMINE)); 36159566063dSJacob Faibussowitsch PetscCall(VecSetBlockSize(subCoordinates, cdim)); 36169566063dSJacob Faibussowitsch PetscCall(VecSetType(subCoordinates,VECSTANDARD)); 36179566063dSJacob Faibussowitsch PetscCall(VecGetArray(coordinates, &coords)); 36189566063dSJacob Faibussowitsch PetscCall(VecGetArray(subCoordinates, &subCoords)); 3619766ab985SMatthew G. Knepley for (v = 0; v < numSubVertices; ++v) { 3620766ab985SMatthew G. Knepley const PetscInt vertex = subVertices[v]; 3621766ab985SMatthew G. Knepley const PetscInt subvertex = firstSubVertex+v; 3622766ab985SMatthew G. Knepley PetscInt dof, off, sdof, soff, d; 3623766ab985SMatthew G. Knepley 36249566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(coordSection, vertex, &dof)); 36259566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(coordSection, vertex, &off)); 36269566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(subCoordSection, subvertex, &sdof)); 36279566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(subCoordSection, subvertex, &soff)); 362808401ef6SPierre Jolivet PetscCheck(dof == sdof,comm, PETSC_ERR_PLIB, "Coordinate dimension %d on subvertex %d, vertex %d should be %d", sdof, subvertex, vertex, dof); 3629766ab985SMatthew G. Knepley for (d = 0; d < dof; ++d) subCoords[soff+d] = coords[off+d]; 3630766ab985SMatthew G. Knepley } 36319566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(coordinates, &coords)); 36329566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(subCoordinates, &subCoords)); 36339566063dSJacob Faibussowitsch PetscCall(DMSetCoordinatesLocal(subdm, subCoordinates)); 36349566063dSJacob Faibussowitsch PetscCall(VecDestroy(&subCoordinates)); 3635766ab985SMatthew G. Knepley } 3636aca35d17SMatthew G. Knepley /* Build SF */ 3637aca35d17SMatthew G. Knepley CHKMEMQ; 3638aca35d17SMatthew G. Knepley { 3639aca35d17SMatthew G. Knepley PetscSF sfPoint, sfPointSub; 3640aca35d17SMatthew G. Knepley const PetscSFNode *remotePoints; 3641bdcf2095SMatthew G. Knepley PetscSFNode *sremotePoints, *newLocalPoints, *newOwners; 3642aca35d17SMatthew G. Knepley const PetscInt *localPoints; 3643bdcf2095SMatthew G. Knepley PetscInt *slocalPoints; 364449c26ae4SMatthew G. Knepley PetscInt numRoots, numLeaves, numSubRoots = numSubCells+numSubFaces+numSubVertices, numSubLeaves = 0, l, sl, ll, pStart, pEnd, p, vStart, vEnd; 3645bdcf2095SMatthew G. Knepley PetscMPIInt rank; 3646aca35d17SMatthew G. Knepley 36479566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject) dm), &rank)); 36489566063dSJacob Faibussowitsch PetscCall(DMGetPointSF(dm, &sfPoint)); 36499566063dSJacob Faibussowitsch PetscCall(DMGetPointSF(subdm, &sfPointSub)); 36509566063dSJacob Faibussowitsch PetscCall(DMPlexGetChart(dm, &pStart, &pEnd)); 36519566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthStratum(dm, 0, &vStart, &vEnd)); 36529566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(sfPoint, &numRoots, &numLeaves, &localPoints, &remotePoints)); 3653aca35d17SMatthew G. Knepley if (numRoots >= 0) { 3654aca35d17SMatthew G. Knepley /* Only vertices should be shared */ 36559566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(pEnd-pStart,&newLocalPoints,numRoots,&newOwners)); 3656bdcf2095SMatthew G. Knepley for (p = 0; p < pEnd-pStart; ++p) { 3657bdcf2095SMatthew G. Knepley newLocalPoints[p].rank = -2; 3658bdcf2095SMatthew G. Knepley newLocalPoints[p].index = -2; 3659bdcf2095SMatthew G. Knepley } 36609e0823b2SMatthew G. Knepley /* Set subleaves */ 3661aca35d17SMatthew G. Knepley for (l = 0; l < numLeaves; ++l) { 3662aca35d17SMatthew G. Knepley const PetscInt point = localPoints[l]; 3663bdcf2095SMatthew G. Knepley const PetscInt subPoint = DMPlexFilterPoint_Internal(point, firstSubVertex, numSubVertices, subVertices); 3664aca35d17SMatthew G. Knepley 366508401ef6SPierre Jolivet PetscCheck(!(point < vStart) || !(point >= vEnd),PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Should not be mapping anything but vertices, %d", point); 3666bdcf2095SMatthew G. Knepley if (subPoint < 0) continue; 3667bdcf2095SMatthew G. Knepley newLocalPoints[point-pStart].rank = rank; 3668bdcf2095SMatthew G. Knepley newLocalPoints[point-pStart].index = subPoint; 3669bdcf2095SMatthew G. Knepley ++numSubLeaves; 3670aca35d17SMatthew G. Knepley } 36719e0823b2SMatthew G. Knepley /* Must put in owned subpoints */ 36729e0823b2SMatthew G. Knepley for (p = pStart; p < pEnd; ++p) { 36739e0823b2SMatthew G. Knepley const PetscInt subPoint = DMPlexFilterPoint_Internal(p, firstSubVertex, numSubVertices, subVertices); 36749e0823b2SMatthew G. Knepley 36759e0823b2SMatthew G. Knepley if (subPoint < 0) { 36769e0823b2SMatthew G. Knepley newOwners[p-pStart].rank = -3; 36779e0823b2SMatthew G. Knepley newOwners[p-pStart].index = -3; 36789e0823b2SMatthew G. Knepley } else { 36799e0823b2SMatthew G. Knepley newOwners[p-pStart].rank = rank; 36809e0823b2SMatthew G. Knepley newOwners[p-pStart].index = subPoint; 36819e0823b2SMatthew G. Knepley } 3682bdcf2095SMatthew G. Knepley } 36839566063dSJacob Faibussowitsch PetscCall(PetscSFReduceBegin(sfPoint, MPIU_2INT, newLocalPoints, newOwners, MPI_MAXLOC)); 36849566063dSJacob Faibussowitsch PetscCall(PetscSFReduceEnd(sfPoint, MPIU_2INT, newLocalPoints, newOwners, MPI_MAXLOC)); 36859566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(sfPoint, MPIU_2INT, newOwners, newLocalPoints,MPI_REPLACE)); 36869566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(sfPoint, MPIU_2INT, newOwners, newLocalPoints,MPI_REPLACE)); 36879566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(numSubLeaves, &slocalPoints)); 36889566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(numSubLeaves, &sremotePoints)); 368949c26ae4SMatthew G. Knepley for (l = 0, sl = 0, ll = 0; l < numLeaves; ++l) { 3690bdcf2095SMatthew G. Knepley const PetscInt point = localPoints[l]; 3691bdcf2095SMatthew G. Knepley const PetscInt subPoint = DMPlexFilterPoint_Internal(point, firstSubVertex, numSubVertices, subVertices); 3692aca35d17SMatthew G. Knepley 3693aca35d17SMatthew G. Knepley if (subPoint < 0) continue; 369449c26ae4SMatthew G. Knepley if (newLocalPoints[point].rank == rank) {++ll; continue;} 3695aca35d17SMatthew G. Knepley slocalPoints[sl] = subPoint; 3696bdcf2095SMatthew G. Knepley sremotePoints[sl].rank = newLocalPoints[point].rank; 3697bdcf2095SMatthew G. Knepley sremotePoints[sl].index = newLocalPoints[point].index; 369808401ef6SPierre Jolivet PetscCheck(sremotePoints[sl].rank >= 0,PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid remote rank for local point %d", point); 369908401ef6SPierre Jolivet PetscCheck(sremotePoints[sl].index >= 0,PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid remote subpoint for local point %d", point); 3700aca35d17SMatthew G. Knepley ++sl; 3701aca35d17SMatthew G. Knepley } 37029566063dSJacob Faibussowitsch PetscCall(PetscFree2(newLocalPoints,newOwners)); 37032c71b3e2SJacob Faibussowitsch PetscCheckFalse(sl + ll != numSubLeaves,PETSC_COMM_SELF, PETSC_ERR_PLIB, "Mismatch in number of subleaves %d + %d != %d", sl, ll, numSubLeaves); 37049566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(sfPointSub, numSubRoots, sl, slocalPoints, PETSC_OWN_POINTER, sremotePoints, PETSC_OWN_POINTER)); 3705aca35d17SMatthew G. Knepley } 3706aca35d17SMatthew G. Knepley } 3707aca35d17SMatthew G. Knepley CHKMEMQ; 3708766ab985SMatthew G. Knepley /* Cleanup */ 37099566063dSJacob Faibussowitsch if (subvertexIS) PetscCall(ISRestoreIndices(subvertexIS, &subVertices)); 37109566063dSJacob Faibussowitsch PetscCall(ISDestroy(&subvertexIS)); 37119566063dSJacob Faibussowitsch PetscCall(PetscFree(subCells)); 3712766ab985SMatthew G. Knepley PetscFunctionReturn(0); 3713766ab985SMatthew G. Knepley } 3714766ab985SMatthew G. Knepley 37153982b651SMatthew G. Knepley static PetscErrorCode DMPlexCreateCohesiveSubmesh_Interpolated(DM dm, const char labelname[], PetscInt value, DM subdm) 3716766ab985SMatthew G. Knepley { 37173982b651SMatthew G. Knepley DMLabel label = NULL; 3718766ab985SMatthew G. Knepley 3719766ab985SMatthew G. Knepley PetscFunctionBegin; 37209566063dSJacob Faibussowitsch if (labelname) PetscCall(DMGetLabel(dm, labelname, &label)); 37219566063dSJacob Faibussowitsch PetscCall(DMPlexCreateSubmeshGeneric_Interpolated(dm, label, value, PETSC_FALSE, PETSC_TRUE, 1, subdm)); 3722766ab985SMatthew G. Knepley PetscFunctionReturn(0); 3723766ab985SMatthew G. Knepley } 3724766ab985SMatthew G. Knepley 3725c08575a3SMatthew G. Knepley /*@C 37267d2fefb6SMatthew G. Knepley DMPlexCreateCohesiveSubmesh - Extract from a mesh with cohesive cells the hypersurface defined by one face of the cells. Optionally, a Label can be given to restrict the cells. 3727766ab985SMatthew G. Knepley 3728766ab985SMatthew G. Knepley Input Parameters: 3729766ab985SMatthew G. Knepley + dm - The original mesh 373027c04023SMatthew G. Knepley . hasLagrange - The mesh has Lagrange unknowns in the cohesive cells 37317afc1a8bSJed Brown . label - A label name, or NULL 373227c04023SMatthew G. Knepley - value - A label value 3733766ab985SMatthew G. Knepley 3734766ab985SMatthew G. Knepley Output Parameter: 3735766ab985SMatthew G. Knepley . subdm - The surface mesh 3736766ab985SMatthew G. Knepley 3737766ab985SMatthew G. Knepley Note: This function produces a DMLabel mapping original points in the submesh to their depth. This can be obtained using DMPlexGetSubpointMap(). 3738766ab985SMatthew G. Knepley 3739766ab985SMatthew G. Knepley Level: developer 3740766ab985SMatthew G. Knepley 3741766ab985SMatthew G. Knepley .seealso: DMPlexGetSubpointMap(), DMPlexCreateSubmesh() 3742c08575a3SMatthew G. Knepley @*/ 374327c04023SMatthew G. Knepley PetscErrorCode DMPlexCreateCohesiveSubmesh(DM dm, PetscBool hasLagrange, const char label[], PetscInt value, DM *subdm) 3744766ab985SMatthew G. Knepley { 3745c0e8cf5fSMatthew G. Knepley PetscInt dim, cdim, depth; 3746766ab985SMatthew G. Knepley 3747766ab985SMatthew G. Knepley PetscFunctionBegin; 3748766ab985SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 374927c04023SMatthew G. Knepley PetscValidPointer(subdm, 5); 37509566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 37519566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepth(dm, &depth)); 37529566063dSJacob Faibussowitsch PetscCall(DMCreate(PetscObjectComm((PetscObject)dm), subdm)); 37539566063dSJacob Faibussowitsch PetscCall(DMSetType(*subdm, DMPLEX)); 37549566063dSJacob Faibussowitsch PetscCall(DMSetDimension(*subdm, dim-1)); 37559566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDim(dm, &cdim)); 37569566063dSJacob Faibussowitsch PetscCall(DMSetCoordinateDim(*subdm, cdim)); 3757766ab985SMatthew G. Knepley if (depth == dim) { 37589566063dSJacob Faibussowitsch PetscCall(DMPlexCreateCohesiveSubmesh_Interpolated(dm, label, value, *subdm)); 3759766ab985SMatthew G. Knepley } else { 37609566063dSJacob Faibussowitsch PetscCall(DMPlexCreateCohesiveSubmesh_Uninterpolated(dm, hasLagrange, label, value, *subdm)); 3761e6ccafaeSMatthew G Knepley } 37629566063dSJacob Faibussowitsch PetscCall(DMPlexCopy_Internal(dm, PETSC_TRUE, *subdm)); 3763e6ccafaeSMatthew G Knepley PetscFunctionReturn(0); 3764e6ccafaeSMatthew G Knepley } 3765e6ccafaeSMatthew G Knepley 3766bec263e5SMatthew G. Knepley /*@ 3767bec263e5SMatthew G. Knepley DMPlexFilter - Extract a subset of mesh cells defined by a label as a separate mesh 3768bec263e5SMatthew G. Knepley 3769bec263e5SMatthew G. Knepley Input Parameters: 3770bec263e5SMatthew G. Knepley + dm - The original mesh 3771bec263e5SMatthew G. Knepley . cellLabel - The DMLabel marking cells contained in the new mesh 3772bec263e5SMatthew G. Knepley - value - The label value to use 3773bec263e5SMatthew G. Knepley 3774bec263e5SMatthew G. Knepley Output Parameter: 3775bec263e5SMatthew G. Knepley . subdm - The new mesh 3776bec263e5SMatthew G. Knepley 3777bec263e5SMatthew G. Knepley Note: This function produces a DMLabel mapping original points in the submesh to their depth. This can be obtained using DMPlexGetSubpointMap(). 3778bec263e5SMatthew G. Knepley 3779bec263e5SMatthew G. Knepley Level: developer 3780bec263e5SMatthew G. Knepley 3781c58f1c22SToby Isaac .seealso: DMPlexGetSubpointMap(), DMGetLabel(), DMLabelSetValue() 3782bec263e5SMatthew G. Knepley @*/ 3783bec263e5SMatthew G. Knepley PetscErrorCode DMPlexFilter(DM dm, DMLabel cellLabel, PetscInt value, DM *subdm) 3784bec263e5SMatthew G. Knepley { 3785bec263e5SMatthew G. Knepley PetscInt dim; 3786bec263e5SMatthew G. Knepley 3787bec263e5SMatthew G. Knepley PetscFunctionBegin; 3788bec263e5SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 3789064a246eSJacob Faibussowitsch PetscValidPointer(subdm, 4); 37909566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 37919566063dSJacob Faibussowitsch PetscCall(DMCreate(PetscObjectComm((PetscObject) dm), subdm)); 37929566063dSJacob Faibussowitsch PetscCall(DMSetType(*subdm, DMPLEX)); 37939566063dSJacob Faibussowitsch PetscCall(DMSetDimension(*subdm, dim)); 3794bec263e5SMatthew G. Knepley /* Extract submesh in place, could be empty on some procs, could have inconsistency if procs do not both extract a shared cell */ 37959566063dSJacob Faibussowitsch PetscCall(DMPlexCreateSubmeshGeneric_Interpolated(dm, cellLabel, value, PETSC_FALSE, PETSC_FALSE, 0, *subdm)); 37969566063dSJacob Faibussowitsch PetscCall(DMPlexCopy_Internal(dm, PETSC_TRUE, *subdm)); 3797bec263e5SMatthew G. Knepley PetscFunctionReturn(0); 3798bec263e5SMatthew G. Knepley } 3799bec263e5SMatthew G. Knepley 380064beef6dSMatthew G. Knepley /*@ 380164beef6dSMatthew G. Knepley DMPlexGetSubpointMap - Returns a DMLabel with point dimension as values 380264beef6dSMatthew G. Knepley 380364beef6dSMatthew G. Knepley Input Parameter: 380464beef6dSMatthew G. Knepley . dm - The submesh DM 380564beef6dSMatthew G. Knepley 380664beef6dSMatthew G. Knepley Output Parameter: 380764beef6dSMatthew G. Knepley . subpointMap - The DMLabel of all the points from the original mesh in this submesh, or NULL if this is not a submesh 380864beef6dSMatthew G. Knepley 380964beef6dSMatthew G. Knepley Level: developer 381064beef6dSMatthew G. Knepley 381197d8846cSMatthew Knepley .seealso: DMPlexCreateSubmesh(), DMPlexGetSubpointIS() 381264beef6dSMatthew G. Knepley @*/ 3813e6ccafaeSMatthew G Knepley PetscErrorCode DMPlexGetSubpointMap(DM dm, DMLabel *subpointMap) 3814e6ccafaeSMatthew G Knepley { 3815e6ccafaeSMatthew G Knepley PetscFunctionBegin; 3816e6ccafaeSMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 3817e6ccafaeSMatthew G Knepley PetscValidPointer(subpointMap, 2); 381865663942SMatthew G. Knepley *subpointMap = ((DM_Plex*) dm->data)->subpointMap; 3819e6ccafaeSMatthew G Knepley PetscFunctionReturn(0); 3820e6ccafaeSMatthew G Knepley } 3821e6ccafaeSMatthew G Knepley 3822c08575a3SMatthew G. Knepley /*@ 3823c08575a3SMatthew G. Knepley DMPlexSetSubpointMap - Sets the DMLabel with point dimension as values 3824c08575a3SMatthew G. Knepley 3825c08575a3SMatthew G. Knepley Input Parameters: 3826c08575a3SMatthew G. Knepley + dm - The submesh DM 3827c08575a3SMatthew G. Knepley - subpointMap - The DMLabel of all the points from the original mesh in this submesh 3828c08575a3SMatthew G. Knepley 3829c08575a3SMatthew G. Knepley Note: Should normally not be called by the user, since it is set in DMPlexCreateSubmesh() 3830c08575a3SMatthew G. Knepley 3831c08575a3SMatthew G. Knepley Level: developer 3832c08575a3SMatthew G. Knepley 383397d8846cSMatthew Knepley .seealso: DMPlexCreateSubmesh(), DMPlexGetSubpointIS() 3834c08575a3SMatthew G. Knepley @*/ 3835e6ccafaeSMatthew G Knepley PetscErrorCode DMPlexSetSubpointMap(DM dm, DMLabel subpointMap) 3836e6ccafaeSMatthew G Knepley { 3837e6ccafaeSMatthew G Knepley DM_Plex *mesh = (DM_Plex *) dm->data; 3838285d324eSMatthew G. Knepley DMLabel tmp; 3839e6ccafaeSMatthew G Knepley 3840e6ccafaeSMatthew G Knepley PetscFunctionBegin; 3841e6ccafaeSMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 3842285d324eSMatthew G. Knepley tmp = mesh->subpointMap; 3843e6ccafaeSMatthew G Knepley mesh->subpointMap = subpointMap; 38449566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject) mesh->subpointMap)); 38459566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&tmp)); 3846e6ccafaeSMatthew G Knepley PetscFunctionReturn(0); 3847e6ccafaeSMatthew G Knepley } 3848e6ccafaeSMatthew G Knepley 384997d8846cSMatthew Knepley static PetscErrorCode DMPlexCreateSubpointIS_Internal(DM dm, IS *subpointIS) 385097d8846cSMatthew Knepley { 385197d8846cSMatthew Knepley DMLabel spmap; 385297d8846cSMatthew Knepley PetscInt depth, d; 385397d8846cSMatthew Knepley 385497d8846cSMatthew Knepley PetscFunctionBegin; 38559566063dSJacob Faibussowitsch PetscCall(DMPlexGetSubpointMap(dm, &spmap)); 38569566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepth(dm, &depth)); 385797d8846cSMatthew Knepley if (spmap && depth >= 0) { 385897d8846cSMatthew Knepley DM_Plex *mesh = (DM_Plex *) dm->data; 385997d8846cSMatthew Knepley PetscInt *points, *depths; 386097d8846cSMatthew Knepley PetscInt pStart, pEnd, p, off; 386197d8846cSMatthew Knepley 38629566063dSJacob Faibussowitsch PetscCall(DMPlexGetChart(dm, &pStart, &pEnd)); 386328b400f6SJacob Faibussowitsch PetscCheck(!pStart,PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Submeshes must start the point numbering at 0, not %d", pStart); 38649566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(pEnd, &points)); 38659566063dSJacob Faibussowitsch PetscCall(DMGetWorkArray(dm, depth+1, MPIU_INT, &depths)); 386697d8846cSMatthew Knepley depths[0] = depth; 386797d8846cSMatthew Knepley depths[1] = 0; 386897d8846cSMatthew Knepley for (d = 2; d <= depth; ++d) {depths[d] = depth+1 - d;} 386997d8846cSMatthew Knepley for (d = 0, off = 0; d <= depth; ++d) { 387097d8846cSMatthew Knepley const PetscInt dep = depths[d]; 387197d8846cSMatthew Knepley PetscInt depStart, depEnd, n; 387297d8846cSMatthew Knepley 38739566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthStratum(dm, dep, &depStart, &depEnd)); 38749566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumSize(spmap, dep, &n)); 387597d8846cSMatthew Knepley if (((d < 2) && (depth > 1)) || (d == 1)) { /* Only check vertices and cells for now since the map is broken for others */ 387608401ef6SPierre Jolivet PetscCheck(n == depEnd-depStart,PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "The number of mapped submesh points %d at depth %d should be %d", n, dep, depEnd-depStart); 387797d8846cSMatthew Knepley } else { 387897d8846cSMatthew Knepley if (!n) { 387997d8846cSMatthew Knepley if (d == 0) { 388097d8846cSMatthew Knepley /* Missing cells */ 388197d8846cSMatthew Knepley for (p = 0; p < depEnd-depStart; ++p, ++off) points[off] = -1; 388297d8846cSMatthew Knepley } else { 388397d8846cSMatthew Knepley /* Missing faces */ 388497d8846cSMatthew Knepley for (p = 0; p < depEnd-depStart; ++p, ++off) points[off] = PETSC_MAX_INT; 388597d8846cSMatthew Knepley } 388697d8846cSMatthew Knepley } 388797d8846cSMatthew Knepley } 388897d8846cSMatthew Knepley if (n) { 388997d8846cSMatthew Knepley IS is; 389097d8846cSMatthew Knepley const PetscInt *opoints; 389197d8846cSMatthew Knepley 38929566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(spmap, dep, &is)); 38939566063dSJacob Faibussowitsch PetscCall(ISGetIndices(is, &opoints)); 389497d8846cSMatthew Knepley for (p = 0; p < n; ++p, ++off) points[off] = opoints[p]; 38959566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(is, &opoints)); 38969566063dSJacob Faibussowitsch PetscCall(ISDestroy(&is)); 389797d8846cSMatthew Knepley } 389897d8846cSMatthew Knepley } 38999566063dSJacob Faibussowitsch PetscCall(DMRestoreWorkArray(dm, depth+1, MPIU_INT, &depths)); 390008401ef6SPierre Jolivet PetscCheck(off == pEnd,PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "The number of mapped submesh points %d should be %d", off, pEnd); 39019566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, pEnd, points, PETSC_OWN_POINTER, subpointIS)); 39029566063dSJacob Faibussowitsch PetscCall(PetscObjectStateGet((PetscObject) spmap, &mesh->subpointState)); 390397d8846cSMatthew Knepley } 390497d8846cSMatthew Knepley PetscFunctionReturn(0); 390597d8846cSMatthew Knepley } 390697d8846cSMatthew Knepley 390764beef6dSMatthew G. Knepley /*@ 390897d8846cSMatthew Knepley DMPlexGetSubpointIS - Returns an IS covering the entire subdm chart with the original points as data 3909e6ccafaeSMatthew G Knepley 3910e6ccafaeSMatthew G Knepley Input Parameter: 3911e6ccafaeSMatthew G Knepley . dm - The submesh DM 3912e6ccafaeSMatthew G Knepley 3913e6ccafaeSMatthew G Knepley Output Parameter: 39140298fd71SBarry Smith . subpointIS - The IS of all the points from the original mesh in this submesh, or NULL if this is not a submesh 3915e6ccafaeSMatthew G Knepley 39163982b651SMatthew G. Knepley Note: This IS is guaranteed to be sorted by the construction of the submesh 391764beef6dSMatthew G. Knepley 391864beef6dSMatthew G. Knepley Level: developer 391964beef6dSMatthew G. Knepley 392064beef6dSMatthew G. Knepley .seealso: DMPlexCreateSubmesh(), DMPlexGetSubpointMap() 392164beef6dSMatthew G. Knepley @*/ 392297d8846cSMatthew Knepley PetscErrorCode DMPlexGetSubpointIS(DM dm, IS *subpointIS) 3923e6ccafaeSMatthew G Knepley { 392497d8846cSMatthew Knepley DM_Plex *mesh = (DM_Plex *) dm->data; 392597d8846cSMatthew Knepley DMLabel spmap; 392697d8846cSMatthew Knepley PetscObjectState state; 3927e6ccafaeSMatthew G Knepley 3928e6ccafaeSMatthew G Knepley PetscFunctionBegin; 3929e6ccafaeSMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 3930e6ccafaeSMatthew G Knepley PetscValidPointer(subpointIS, 2); 39319566063dSJacob Faibussowitsch PetscCall(DMPlexGetSubpointMap(dm, &spmap)); 39329566063dSJacob Faibussowitsch PetscCall(PetscObjectStateGet((PetscObject) spmap, &state)); 39339566063dSJacob Faibussowitsch if (state != mesh->subpointState || !mesh->subpointIS) PetscCall(DMPlexCreateSubpointIS_Internal(dm, &mesh->subpointIS)); 393497d8846cSMatthew Knepley *subpointIS = mesh->subpointIS; 3935e6ccafaeSMatthew G Knepley PetscFunctionReturn(0); 3936e6ccafaeSMatthew G Knepley } 3937559a1558SMatthew G. Knepley 3938559a1558SMatthew G. Knepley /*@ 3939a6e0b375SMatthew G. Knepley DMGetEnclosureRelation - Get the relationship between dmA and dmB 3940559a1558SMatthew G. Knepley 3941559a1558SMatthew G. Knepley Input Parameters: 3942a6e0b375SMatthew G. Knepley + dmA - The first DM 3943a6e0b375SMatthew G. Knepley - dmB - The second DM 3944559a1558SMatthew G. Knepley 3945559a1558SMatthew G. Knepley Output Parameter: 3946a6e0b375SMatthew G. Knepley . rel - The relation of dmA to dmB 3947559a1558SMatthew G. Knepley 3948a6e0b375SMatthew G. Knepley Level: intermediate 3949559a1558SMatthew G. Knepley 3950446c23c1SPierre Jolivet .seealso: DMGetEnclosurePoint() 3951559a1558SMatthew G. Knepley @*/ 3952a6e0b375SMatthew G. Knepley PetscErrorCode DMGetEnclosureRelation(DM dmA, DM dmB, DMEnclosureType *rel) 3953559a1558SMatthew G. Knepley { 3954a6e0b375SMatthew G. Knepley DM plexA, plexB, sdm; 3955559a1558SMatthew G. Knepley DMLabel spmap; 3956a6e0b375SMatthew G. Knepley PetscInt pStartA, pEndA, pStartB, pEndB, NpA, NpB; 3957559a1558SMatthew G. Knepley 395844171101SMatthew G. Knepley PetscFunctionBegin; 3959a6e0b375SMatthew G. Knepley PetscValidPointer(rel, 3); 3960a6e0b375SMatthew G. Knepley *rel = DM_ENC_NONE; 3961a6e0b375SMatthew G. Knepley if (!dmA || !dmB) PetscFunctionReturn(0); 3962a6e0b375SMatthew G. Knepley PetscValidHeaderSpecific(dmA, DM_CLASSID, 1); 3963064a246eSJacob Faibussowitsch PetscValidHeaderSpecific(dmB, DM_CLASSID, 2); 3964a6e0b375SMatthew G. Knepley if (dmA == dmB) {*rel = DM_ENC_EQUALITY; PetscFunctionReturn(0);} 39659566063dSJacob Faibussowitsch PetscCall(DMConvert(dmA, DMPLEX, &plexA)); 39669566063dSJacob Faibussowitsch PetscCall(DMConvert(dmB, DMPLEX, &plexB)); 39679566063dSJacob Faibussowitsch PetscCall(DMPlexGetChart(plexA, &pStartA, &pEndA)); 39689566063dSJacob Faibussowitsch PetscCall(DMPlexGetChart(plexB, &pStartB, &pEndB)); 3969a6e0b375SMatthew G. Knepley /* Assumption 1: subDMs have smaller charts than the DMs that they originate from 3970a6e0b375SMatthew G. Knepley - The degenerate case of a subdomain which includes all of the domain on some process can be treated as equality */ 3971a6e0b375SMatthew G. Knepley if ((pStartA == pStartB) && (pEndA == pEndB)) { 3972a6e0b375SMatthew G. Knepley *rel = DM_ENC_EQUALITY; 3973a6e0b375SMatthew G. Knepley goto end; 3974559a1558SMatthew G. Knepley } 3975a6e0b375SMatthew G. Knepley NpA = pEndA - pStartA; 3976a6e0b375SMatthew G. Knepley NpB = pEndB - pStartB; 3977a6e0b375SMatthew G. Knepley if (NpA == NpB) goto end; 3978a6e0b375SMatthew G. Knepley sdm = NpA > NpB ? plexB : plexA; /* The other is the original, enclosing dm */ 39799566063dSJacob Faibussowitsch PetscCall(DMPlexGetSubpointMap(sdm, &spmap)); 3980a6e0b375SMatthew G. Knepley if (!spmap) goto end; 3981a6e0b375SMatthew G. Knepley /* TODO Check the space mapped to by subpointMap is same size as dm */ 3982a6e0b375SMatthew G. Knepley if (NpA > NpB) { 3983a6e0b375SMatthew G. Knepley *rel = DM_ENC_SUPERMESH; 3984a6e0b375SMatthew G. Knepley } else { 3985a6e0b375SMatthew G. Knepley *rel = DM_ENC_SUBMESH; 3986a6e0b375SMatthew G. Knepley } 3987a6e0b375SMatthew G. Knepley end: 39889566063dSJacob Faibussowitsch PetscCall(DMDestroy(&plexA)); 39899566063dSJacob Faibussowitsch PetscCall(DMDestroy(&plexB)); 3990559a1558SMatthew G. Knepley PetscFunctionReturn(0); 3991559a1558SMatthew G. Knepley } 399244171101SMatthew G. Knepley 399344171101SMatthew G. Knepley /*@ 3994a6e0b375SMatthew G. Knepley DMGetEnclosurePoint - Get the point pA in dmA which corresponds to the point pB in dmB 399544171101SMatthew G. Knepley 399644171101SMatthew G. Knepley Input Parameters: 3997a6e0b375SMatthew G. Knepley + dmA - The first DM 3998a6e0b375SMatthew G. Knepley . dmB - The second DM 3999a6e0b375SMatthew G. Knepley . etype - The type of enclosure relation that dmA has to dmB 4000a6e0b375SMatthew G. Knepley - pB - A point of dmB 400144171101SMatthew G. Knepley 400244171101SMatthew G. Knepley Output Parameter: 4003a6e0b375SMatthew G. Knepley . pA - The corresponding point of dmA 400444171101SMatthew G. Knepley 4005a6e0b375SMatthew G. Knepley Level: intermediate 400644171101SMatthew G. Knepley 4007a6e0b375SMatthew G. Knepley .seealso: DMGetEnclosureRelation() 400844171101SMatthew G. Knepley @*/ 4009a6e0b375SMatthew G. Knepley PetscErrorCode DMGetEnclosurePoint(DM dmA, DM dmB, DMEnclosureType etype, PetscInt pB, PetscInt *pA) 401044171101SMatthew G. Knepley { 4011a6e0b375SMatthew G. Knepley DM sdm; 4012a6e0b375SMatthew G. Knepley IS subpointIS; 4013a6e0b375SMatthew G. Knepley const PetscInt *subpoints; 4014a6e0b375SMatthew G. Knepley PetscInt numSubpoints; 401544171101SMatthew G. Knepley 401644171101SMatthew G. Knepley PetscFunctionBegin; 4017a6e0b375SMatthew G. Knepley /* TODO Cache the IS, making it look like an index */ 4018a6e0b375SMatthew G. Knepley switch (etype) { 4019a6e0b375SMatthew G. Knepley case DM_ENC_SUPERMESH: 4020a6e0b375SMatthew G. Knepley sdm = dmB; 40219566063dSJacob Faibussowitsch PetscCall(DMPlexGetSubpointIS(sdm, &subpointIS)); 40229566063dSJacob Faibussowitsch PetscCall(ISGetIndices(subpointIS, &subpoints)); 4023a6e0b375SMatthew G. Knepley *pA = subpoints[pB]; 40249566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(subpointIS, &subpoints)); 4025a6e0b375SMatthew G. Knepley break; 4026a6e0b375SMatthew G. Knepley case DM_ENC_SUBMESH: 4027a6e0b375SMatthew G. Knepley sdm = dmA; 40289566063dSJacob Faibussowitsch PetscCall(DMPlexGetSubpointIS(sdm, &subpointIS)); 40299566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(subpointIS, &numSubpoints)); 40309566063dSJacob Faibussowitsch PetscCall(ISGetIndices(subpointIS, &subpoints)); 40319566063dSJacob Faibussowitsch PetscCall(PetscFindInt(pB, numSubpoints, subpoints, pA)); 4032a6e0b375SMatthew G. Knepley if (*pA < 0) { 40339566063dSJacob Faibussowitsch PetscCall(DMViewFromOptions(dmA, NULL, "-dm_enc_A_view")); 40349566063dSJacob Faibussowitsch PetscCall(DMViewFromOptions(dmB, NULL, "-dm_enc_B_view")); 403598921bdaSJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Point %d not found in submesh", pB); 4036a6e0b375SMatthew G. Knepley } 40379566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(subpointIS, &subpoints)); 4038a6e0b375SMatthew G. Knepley break; 4039a6e0b375SMatthew G. Knepley case DM_ENC_EQUALITY: 4040a6e0b375SMatthew G. Knepley case DM_ENC_NONE: 4041a6e0b375SMatthew G. Knepley *pA = pB;break; 4042a6e0b375SMatthew G. Knepley case DM_ENC_UNKNOWN: 4043a6e0b375SMatthew G. Knepley { 4044a6e0b375SMatthew G. Knepley DMEnclosureType enc; 404544171101SMatthew G. Knepley 40469566063dSJacob Faibussowitsch PetscCall(DMGetEnclosureRelation(dmA, dmB, &enc)); 40479566063dSJacob Faibussowitsch PetscCall(DMGetEnclosurePoint(dmA, dmB, enc, pB, pA)); 4048a6e0b375SMatthew G. Knepley } 4049a6e0b375SMatthew G. Knepley break; 405098921bdaSJacob Faibussowitsch default: SETERRQ(PetscObjectComm((PetscObject) dmA), PETSC_ERR_ARG_OUTOFRANGE, "Invalid enclosure type %d", (int) etype); 405144171101SMatthew G. Knepley } 405244171101SMatthew G. Knepley PetscFunctionReturn(0); 405344171101SMatthew G. Knepley } 4054