1af0996ceSBarry Smith #include <petsc/private/dmpleximpl.h> /*I "petscdmplex.h" I*/ 2c58f1c22SToby Isaac #include <petsc/private/dmlabelimpl.h> /*I "petscdmlabel.h" I*/ 30c312b8eSJed Brown #include <petscsf.h> 4e6ccafaeSMatthew G Knepley 59371c9d4SSatish Balay static PetscErrorCode DMPlexCellIsHybrid_Internal(DM dm, PetscInt p, PetscBool *isHybrid) { 6412e9a14SMatthew G. Knepley DMPolytopeType ct; 7412e9a14SMatthew G. Knepley 8412e9a14SMatthew G. Knepley PetscFunctionBegin; 99566063dSJacob Faibussowitsch PetscCall(DMPlexGetCellType(dm, p, &ct)); 10412e9a14SMatthew G. Knepley switch (ct) { 11412e9a14SMatthew G. Knepley case DM_POLYTOPE_POINT_PRISM_TENSOR: 12412e9a14SMatthew G. Knepley case DM_POLYTOPE_SEG_PRISM_TENSOR: 13412e9a14SMatthew G. Knepley case DM_POLYTOPE_TRI_PRISM_TENSOR: 149371c9d4SSatish Balay case DM_POLYTOPE_QUAD_PRISM_TENSOR: *isHybrid = PETSC_TRUE; 15412e9a14SMatthew G. Knepley default: *isHybrid = PETSC_FALSE; 16412e9a14SMatthew G. Knepley } 17412e9a14SMatthew G. Knepley PetscFunctionReturn(0); 18412e9a14SMatthew G. Knepley } 19412e9a14SMatthew G. Knepley 209371c9d4SSatish Balay static PetscErrorCode DMPlexGetTensorPrismBounds_Internal(DM dm, PetscInt dim, PetscInt *cStart, PetscInt *cEnd) { 21412e9a14SMatthew G. Knepley DMLabel ctLabel; 22412e9a14SMatthew G. Knepley 23412e9a14SMatthew G. Knepley PetscFunctionBegin; 24412e9a14SMatthew G. Knepley if (cStart) *cStart = -1; 25412e9a14SMatthew G. Knepley if (cEnd) *cEnd = -1; 269566063dSJacob Faibussowitsch PetscCall(DMPlexGetCellTypeLabel(dm, &ctLabel)); 27412e9a14SMatthew G. Knepley switch (dim) { 289566063dSJacob Faibussowitsch case 1: PetscCall(DMLabelGetStratumBounds(ctLabel, DM_POLYTOPE_POINT_PRISM_TENSOR, cStart, cEnd)); break; 299566063dSJacob Faibussowitsch case 2: PetscCall(DMLabelGetStratumBounds(ctLabel, DM_POLYTOPE_SEG_PRISM_TENSOR, cStart, cEnd)); break; 30412e9a14SMatthew G. Knepley case 3: 319566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumBounds(ctLabel, DM_POLYTOPE_TRI_PRISM_TENSOR, cStart, cEnd)); 329566063dSJacob Faibussowitsch if (*cStart < 0) PetscCall(DMLabelGetStratumBounds(ctLabel, DM_POLYTOPE_QUAD_PRISM_TENSOR, cStart, cEnd)); 33412e9a14SMatthew G. Knepley break; 34412e9a14SMatthew G. Knepley default: PetscFunctionReturn(0); 35412e9a14SMatthew G. Knepley } 36412e9a14SMatthew G. Knepley PetscFunctionReturn(0); 37412e9a14SMatthew G. Knepley } 38412e9a14SMatthew G. Knepley 399371c9d4SSatish Balay static PetscErrorCode DMPlexMarkBoundaryFaces_Internal(DM dm, PetscInt val, PetscInt cellHeight, DMLabel label) { 4030560a7bSMatthew G. Knepley PetscInt fStart, fEnd, f; 4130560a7bSMatthew G. Knepley 4230560a7bSMatthew G. Knepley PetscFunctionBegin; 439566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(dm, cellHeight + 1, &fStart, &fEnd)); 4430560a7bSMatthew G. Knepley for (f = fStart; f < fEnd; ++f) { 4530560a7bSMatthew G. Knepley PetscInt supportSize; 4630560a7bSMatthew G. Knepley 479566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dm, f, &supportSize)); 48e752be1aSMatthew G. Knepley if (supportSize == 1) { 49e752be1aSMatthew G. Knepley if (val < 0) { 50e752be1aSMatthew G. Knepley PetscInt *closure = NULL; 51e752be1aSMatthew G. Knepley PetscInt clSize, cl, cval; 52e752be1aSMatthew G. Knepley 539566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(dm, f, PETSC_TRUE, &clSize, &closure)); 54e752be1aSMatthew G. Knepley for (cl = 0; cl < clSize * 2; cl += 2) { 559566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, closure[cl], &cval)); 56e752be1aSMatthew G. Knepley if (cval < 0) continue; 579566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(label, f, cval)); 58e752be1aSMatthew G. Knepley break; 59e752be1aSMatthew G. Knepley } 609566063dSJacob Faibussowitsch if (cl == clSize * 2) PetscCall(DMLabelSetValue(label, f, 1)); 619566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dm, f, PETSC_TRUE, &clSize, &closure)); 62e752be1aSMatthew G. Knepley } else { 639566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(label, f, val)); 64e752be1aSMatthew G. Knepley } 65e752be1aSMatthew G. Knepley } 6630560a7bSMatthew G. Knepley } 6730560a7bSMatthew G. Knepley PetscFunctionReturn(0); 6830560a7bSMatthew G. Knepley } 6930560a7bSMatthew G. Knepley 70cd0c2139SMatthew G Knepley /*@ 71cd0c2139SMatthew G Knepley DMPlexMarkBoundaryFaces - Mark all faces on the boundary 72cd0c2139SMatthew G Knepley 73cd0c2139SMatthew G Knepley Not Collective 74cd0c2139SMatthew G Knepley 75d8d19677SJose E. Roman Input Parameters: 76e752be1aSMatthew G. Knepley + dm - The original DM 77e752be1aSMatthew G. Knepley - val - The marker value, or PETSC_DETERMINE to use some value in the closure (or 1 if none are found) 78cd0c2139SMatthew G Knepley 79cd0c2139SMatthew G Knepley Output Parameter: 80e752be1aSMatthew G. Knepley . label - The DMLabel marking boundary faces with the given value 81cd0c2139SMatthew G Knepley 82cd0c2139SMatthew G Knepley Level: developer 83cd0c2139SMatthew G Knepley 84db781477SPatrick Sanan .seealso: `DMLabelCreate()`, `DMCreateLabel()` 8509f723d9SJed Brown @*/ 869371c9d4SSatish Balay PetscErrorCode DMPlexMarkBoundaryFaces(DM dm, PetscInt val, DMLabel label) { 87827c4036SVaclav Hapla DMPlexInterpolatedFlag flg; 88cd0c2139SMatthew G Knepley 89cd0c2139SMatthew G Knepley PetscFunctionBegin; 90827c4036SVaclav Hapla PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 919566063dSJacob Faibussowitsch PetscCall(DMPlexIsInterpolated(dm, &flg)); 9208401ef6SPierre Jolivet PetscCheck(flg == DMPLEX_INTERPOLATED_FULL, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "DM is not fully interpolated on this rank"); 939566063dSJacob Faibussowitsch PetscCall(DMPlexMarkBoundaryFaces_Internal(dm, val, 0, label)); 94cd0c2139SMatthew G Knepley PetscFunctionReturn(0); 95cd0c2139SMatthew G Knepley } 96cd0c2139SMatthew G Knepley 979371c9d4SSatish Balay static PetscErrorCode DMPlexLabelComplete_Internal(DM dm, DMLabel label, PetscBool completeCells) { 98b0bf5782SToby Isaac IS valueIS; 99ac51f24eSSander Arens PetscSF sfPoint; 100b0bf5782SToby Isaac const PetscInt *values; 101ac51f24eSSander Arens PetscInt numValues, v, cStart, cEnd, nroots; 102b0bf5782SToby Isaac 103b0bf5782SToby Isaac PetscFunctionBegin; 1049566063dSJacob Faibussowitsch PetscCall(DMLabelGetNumValues(label, &numValues)); 1059566063dSJacob Faibussowitsch PetscCall(DMLabelGetValueIS(label, &valueIS)); 1069566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(dm, 0, &cStart, &cEnd)); 1079566063dSJacob Faibussowitsch PetscCall(ISGetIndices(valueIS, &values)); 108b0bf5782SToby Isaac for (v = 0; v < numValues; ++v) { 109b0bf5782SToby Isaac IS pointIS; 110b0bf5782SToby Isaac const PetscInt *points; 111b0bf5782SToby Isaac PetscInt numPoints, p; 112b0bf5782SToby Isaac 1139566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumSize(label, values[v], &numPoints)); 1149566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(label, values[v], &pointIS)); 1159566063dSJacob Faibussowitsch PetscCall(ISGetIndices(pointIS, &points)); 116b0bf5782SToby Isaac for (p = 0; p < numPoints; ++p) { 117b0bf5782SToby Isaac PetscInt q = points[p]; 118b0bf5782SToby Isaac PetscInt *closure = NULL; 119b0bf5782SToby Isaac PetscInt closureSize, c; 120b0bf5782SToby Isaac 121b0bf5782SToby Isaac if (cStart <= q && q < cEnd && !completeCells) { /* skip cells */ 122b0bf5782SToby Isaac continue; 123b0bf5782SToby Isaac } 1249566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(dm, q, PETSC_TRUE, &closureSize, &closure)); 12548a46eb9SPierre Jolivet for (c = 0; c < closureSize * 2; c += 2) PetscCall(DMLabelSetValue(label, closure[c], values[v])); 1269566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dm, q, PETSC_TRUE, &closureSize, &closure)); 127b0bf5782SToby Isaac } 1289566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(pointIS, &points)); 1299566063dSJacob Faibussowitsch PetscCall(ISDestroy(&pointIS)); 130b0bf5782SToby Isaac } 1319566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(valueIS, &values)); 1329566063dSJacob Faibussowitsch PetscCall(ISDestroy(&valueIS)); 1339566063dSJacob Faibussowitsch PetscCall(DMGetPointSF(dm, &sfPoint)); 1349566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(sfPoint, &nroots, NULL, NULL, NULL)); 135ac51f24eSSander Arens if (nroots >= 0) { 13626279d81SSanderA DMLabel lblRoots, lblLeaves; 13726279d81SSanderA IS valueIS, pointIS; 13826279d81SSanderA const PetscInt *values; 13926279d81SSanderA PetscInt numValues, v; 14026279d81SSanderA 14126279d81SSanderA /* Pull point contributions from remote leaves into local roots */ 1429566063dSJacob Faibussowitsch PetscCall(DMLabelGather(label, sfPoint, &lblLeaves)); 1439566063dSJacob Faibussowitsch PetscCall(DMLabelGetValueIS(lblLeaves, &valueIS)); 1449566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(valueIS, &numValues)); 1459566063dSJacob Faibussowitsch PetscCall(ISGetIndices(valueIS, &values)); 14626279d81SSanderA for (v = 0; v < numValues; ++v) { 14726279d81SSanderA const PetscInt value = values[v]; 14826279d81SSanderA 1499566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(lblLeaves, value, &pointIS)); 1509566063dSJacob Faibussowitsch PetscCall(DMLabelInsertIS(label, pointIS, value)); 1519566063dSJacob Faibussowitsch PetscCall(ISDestroy(&pointIS)); 15226279d81SSanderA } 1539566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(valueIS, &values)); 1549566063dSJacob Faibussowitsch PetscCall(ISDestroy(&valueIS)); 1559566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&lblLeaves)); 15626279d81SSanderA /* Push point contributions from roots into remote leaves */ 1579566063dSJacob Faibussowitsch PetscCall(DMLabelDistribute(label, sfPoint, &lblRoots)); 1589566063dSJacob Faibussowitsch PetscCall(DMLabelGetValueIS(lblRoots, &valueIS)); 1599566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(valueIS, &numValues)); 1609566063dSJacob Faibussowitsch PetscCall(ISGetIndices(valueIS, &values)); 16126279d81SSanderA for (v = 0; v < numValues; ++v) { 16226279d81SSanderA const PetscInt value = values[v]; 16326279d81SSanderA 1649566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(lblRoots, value, &pointIS)); 1659566063dSJacob Faibussowitsch PetscCall(DMLabelInsertIS(label, pointIS, value)); 1669566063dSJacob Faibussowitsch PetscCall(ISDestroy(&pointIS)); 16726279d81SSanderA } 1689566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(valueIS, &values)); 1699566063dSJacob Faibussowitsch PetscCall(ISDestroy(&valueIS)); 1709566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&lblRoots)); 17126279d81SSanderA } 172b0bf5782SToby Isaac PetscFunctionReturn(0); 173b0bf5782SToby Isaac } 174b0bf5782SToby Isaac 1752be2b188SMatthew G Knepley /*@ 1762be2b188SMatthew G Knepley DMPlexLabelComplete - Starting with a label marking points on a surface, we add the transitive closure to the surface 1772be2b188SMatthew G Knepley 1782be2b188SMatthew G Knepley Input Parameters: 1792be2b188SMatthew G Knepley + dm - The DM 1802be2b188SMatthew G Knepley - label - A DMLabel marking the surface points 1812be2b188SMatthew G Knepley 1822be2b188SMatthew G Knepley Output Parameter: 1832be2b188SMatthew G Knepley . label - A DMLabel marking all surface points in the transitive closure 1842be2b188SMatthew G Knepley 1852be2b188SMatthew G Knepley Level: developer 1862be2b188SMatthew G Knepley 187db781477SPatrick Sanan .seealso: `DMPlexLabelCohesiveComplete()` 1882be2b188SMatthew G Knepley @*/ 1899371c9d4SSatish Balay PetscErrorCode DMPlexLabelComplete(DM dm, DMLabel label) { 1902be2b188SMatthew G Knepley PetscFunctionBegin; 1919566063dSJacob Faibussowitsch PetscCall(DMPlexLabelComplete_Internal(dm, label, PETSC_TRUE)); 1922be2b188SMatthew G Knepley PetscFunctionReturn(0); 1932be2b188SMatthew G Knepley } 1942be2b188SMatthew G Knepley 1956cf0e42fSMatthew G. Knepley /*@ 196a6e0b375SMatthew G. Knepley DMPlexLabelAddCells - Starting with a label marking points on a surface, we add a cell for each point 1976cf0e42fSMatthew G. Knepley 1986cf0e42fSMatthew G. Knepley Input Parameters: 1996cf0e42fSMatthew G. Knepley + dm - The DM 2006cf0e42fSMatthew G. Knepley - label - A DMLabel marking the surface points 2016cf0e42fSMatthew G. Knepley 2026cf0e42fSMatthew G. Knepley Output Parameter: 2036cf0e42fSMatthew G. Knepley . label - A DMLabel incorporating cells 2046cf0e42fSMatthew G. Knepley 2056cf0e42fSMatthew G. Knepley Level: developer 2066cf0e42fSMatthew G. Knepley 2076cf0e42fSMatthew G. Knepley Note: The cells allow FEM boundary conditions to be applied using the cell geometry 2086cf0e42fSMatthew G. Knepley 209db781477SPatrick Sanan .seealso: `DMPlexLabelAddFaceCells()`, `DMPlexLabelComplete()`, `DMPlexLabelCohesiveComplete()` 2106cf0e42fSMatthew G. Knepley @*/ 2119371c9d4SSatish Balay PetscErrorCode DMPlexLabelAddCells(DM dm, DMLabel label) { 2126cf0e42fSMatthew G. Knepley IS valueIS; 2136cf0e42fSMatthew G. Knepley const PetscInt *values; 214485ad865SMatthew G. Knepley PetscInt numValues, v, cStart, cEnd; 2156cf0e42fSMatthew G. Knepley 2166cf0e42fSMatthew G. Knepley PetscFunctionBegin; 2179566063dSJacob Faibussowitsch PetscCall(DMPlexGetSimplexOrBoxCells(dm, 0, &cStart, &cEnd)); 2189566063dSJacob Faibussowitsch PetscCall(DMLabelGetNumValues(label, &numValues)); 2199566063dSJacob Faibussowitsch PetscCall(DMLabelGetValueIS(label, &valueIS)); 2209566063dSJacob Faibussowitsch PetscCall(ISGetIndices(valueIS, &values)); 2216cf0e42fSMatthew G. Knepley for (v = 0; v < numValues; ++v) { 2226cf0e42fSMatthew G. Knepley IS pointIS; 2236cf0e42fSMatthew G. Knepley const PetscInt *points; 2246cf0e42fSMatthew G. Knepley PetscInt numPoints, p; 2256cf0e42fSMatthew G. Knepley 2269566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumSize(label, values[v], &numPoints)); 2279566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(label, values[v], &pointIS)); 2289566063dSJacob Faibussowitsch PetscCall(ISGetIndices(pointIS, &points)); 2296cf0e42fSMatthew G. Knepley for (p = 0; p < numPoints; ++p) { 2306cf0e42fSMatthew G. Knepley PetscInt *closure = NULL; 231a6e0b375SMatthew G. Knepley PetscInt closureSize, cl; 2326cf0e42fSMatthew G. Knepley 2339566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(dm, points[p], PETSC_FALSE, &closureSize, &closure)); 23422eabd52SMatthew G. Knepley for (cl = closureSize - 1; cl > 0; --cl) { 235a6e0b375SMatthew G. Knepley const PetscInt cell = closure[cl * 2]; 2369371c9d4SSatish Balay if ((cell >= cStart) && (cell < cEnd)) { 2379371c9d4SSatish Balay PetscCall(DMLabelSetValue(label, cell, values[v])); 2389371c9d4SSatish Balay break; 2399371c9d4SSatish Balay } 24022eabd52SMatthew G. Knepley } 2419566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dm, points[p], PETSC_FALSE, &closureSize, &closure)); 2426cf0e42fSMatthew G. Knepley } 2439566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(pointIS, &points)); 2449566063dSJacob Faibussowitsch PetscCall(ISDestroy(&pointIS)); 2456cf0e42fSMatthew G. Knepley } 2469566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(valueIS, &values)); 2479566063dSJacob Faibussowitsch PetscCall(ISDestroy(&valueIS)); 2486cf0e42fSMatthew G. Knepley PetscFunctionReturn(0); 2496cf0e42fSMatthew G. Knepley } 2506cf0e42fSMatthew G. Knepley 251f402d5e4SToby Isaac /*@ 252a6e0b375SMatthew G. Knepley DMPlexLabelAddFaceCells - Starting with a label marking faces on a surface, we add a cell for each face 253a6e0b375SMatthew G. Knepley 254a6e0b375SMatthew G. Knepley Input Parameters: 255a6e0b375SMatthew G. Knepley + dm - The DM 256a6e0b375SMatthew G. Knepley - label - A DMLabel marking the surface points 257a6e0b375SMatthew G. Knepley 258a6e0b375SMatthew G. Knepley Output Parameter: 259a6e0b375SMatthew G. Knepley . label - A DMLabel incorporating cells 260a6e0b375SMatthew G. Knepley 261a6e0b375SMatthew G. Knepley Level: developer 262a6e0b375SMatthew G. Knepley 263a6e0b375SMatthew G. Knepley Note: The cells allow FEM boundary conditions to be applied using the cell geometry 264a6e0b375SMatthew G. Knepley 265db781477SPatrick Sanan .seealso: `DMPlexLabelAddCells()`, `DMPlexLabelComplete()`, `DMPlexLabelCohesiveComplete()` 266a6e0b375SMatthew G. Knepley @*/ 2679371c9d4SSatish Balay PetscErrorCode DMPlexLabelAddFaceCells(DM dm, DMLabel label) { 268a6e0b375SMatthew G. Knepley IS valueIS; 269a6e0b375SMatthew G. Knepley const PetscInt *values; 270a6e0b375SMatthew G. Knepley PetscInt numValues, v, cStart, cEnd, fStart, fEnd; 271a6e0b375SMatthew G. Knepley 272a6e0b375SMatthew G. Knepley PetscFunctionBegin; 2739566063dSJacob Faibussowitsch PetscCall(DMPlexGetSimplexOrBoxCells(dm, 0, &cStart, &cEnd)); 2749566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(dm, 1, &fStart, &fEnd)); 2759566063dSJacob Faibussowitsch PetscCall(DMLabelGetNumValues(label, &numValues)); 2769566063dSJacob Faibussowitsch PetscCall(DMLabelGetValueIS(label, &valueIS)); 2779566063dSJacob Faibussowitsch PetscCall(ISGetIndices(valueIS, &values)); 278a6e0b375SMatthew G. Knepley for (v = 0; v < numValues; ++v) { 279a6e0b375SMatthew G. Knepley IS pointIS; 280a6e0b375SMatthew G. Knepley const PetscInt *points; 281a6e0b375SMatthew G. Knepley PetscInt numPoints, p; 282a6e0b375SMatthew G. Knepley 2839566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumSize(label, values[v], &numPoints)); 2849566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(label, values[v], &pointIS)); 2859566063dSJacob Faibussowitsch PetscCall(ISGetIndices(pointIS, &points)); 286a6e0b375SMatthew G. Knepley for (p = 0; p < numPoints; ++p) { 287a6e0b375SMatthew G. Knepley const PetscInt face = points[p]; 288a6e0b375SMatthew G. Knepley PetscInt *closure = NULL; 289a6e0b375SMatthew G. Knepley PetscInt closureSize, cl; 290a6e0b375SMatthew G. Knepley 291a6e0b375SMatthew G. Knepley if ((face < fStart) || (face >= fEnd)) continue; 2929566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(dm, face, PETSC_FALSE, &closureSize, &closure)); 293a6e0b375SMatthew G. Knepley for (cl = closureSize - 1; cl > 0; --cl) { 294a6e0b375SMatthew G. Knepley const PetscInt cell = closure[cl * 2]; 2959371c9d4SSatish Balay if ((cell >= cStart) && (cell < cEnd)) { 2969371c9d4SSatish Balay PetscCall(DMLabelSetValue(label, cell, values[v])); 2979371c9d4SSatish Balay break; 2989371c9d4SSatish Balay } 299a6e0b375SMatthew G. Knepley } 3009566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dm, face, PETSC_FALSE, &closureSize, &closure)); 301a6e0b375SMatthew G. Knepley } 3029566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(pointIS, &points)); 3039566063dSJacob Faibussowitsch PetscCall(ISDestroy(&pointIS)); 304a6e0b375SMatthew G. Knepley } 3059566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(valueIS, &values)); 3069566063dSJacob Faibussowitsch PetscCall(ISDestroy(&valueIS)); 307a6e0b375SMatthew G. Knepley PetscFunctionReturn(0); 308a6e0b375SMatthew G. Knepley } 309a6e0b375SMatthew G. Knepley 310a6e0b375SMatthew G. Knepley /*@ 311f402d5e4SToby Isaac DMPlexLabelClearCells - Remove cells from a label 312f402d5e4SToby Isaac 313f402d5e4SToby Isaac Input Parameters: 314f402d5e4SToby Isaac + dm - The DM 315f402d5e4SToby Isaac - label - A DMLabel marking surface points and their adjacent cells 316f402d5e4SToby Isaac 317f402d5e4SToby Isaac Output Parameter: 318f402d5e4SToby Isaac . label - A DMLabel without cells 319f402d5e4SToby Isaac 320f402d5e4SToby Isaac Level: developer 321f402d5e4SToby Isaac 322a6e0b375SMatthew G. Knepley Note: This undoes DMPlexLabelAddCells() or DMPlexLabelAddFaceCells() 323f402d5e4SToby Isaac 324db781477SPatrick Sanan .seealso: `DMPlexLabelComplete()`, `DMPlexLabelCohesiveComplete()`, `DMPlexLabelAddCells()` 325f402d5e4SToby Isaac @*/ 3269371c9d4SSatish Balay PetscErrorCode DMPlexLabelClearCells(DM dm, DMLabel label) { 327f402d5e4SToby Isaac IS valueIS; 328f402d5e4SToby Isaac const PetscInt *values; 329485ad865SMatthew G. Knepley PetscInt numValues, v, cStart, cEnd; 330f402d5e4SToby Isaac 331f402d5e4SToby Isaac PetscFunctionBegin; 3329566063dSJacob Faibussowitsch PetscCall(DMPlexGetSimplexOrBoxCells(dm, 0, &cStart, &cEnd)); 3339566063dSJacob Faibussowitsch PetscCall(DMLabelGetNumValues(label, &numValues)); 3349566063dSJacob Faibussowitsch PetscCall(DMLabelGetValueIS(label, &valueIS)); 3359566063dSJacob Faibussowitsch PetscCall(ISGetIndices(valueIS, &values)); 336f402d5e4SToby Isaac for (v = 0; v < numValues; ++v) { 337f402d5e4SToby Isaac IS pointIS; 338f402d5e4SToby Isaac const PetscInt *points; 339f402d5e4SToby Isaac PetscInt numPoints, p; 340f402d5e4SToby Isaac 3419566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumSize(label, values[v], &numPoints)); 3429566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(label, values[v], &pointIS)); 3439566063dSJacob Faibussowitsch PetscCall(ISGetIndices(pointIS, &points)); 344f402d5e4SToby Isaac for (p = 0; p < numPoints; ++p) { 345f402d5e4SToby Isaac PetscInt point = points[p]; 346f402d5e4SToby Isaac 34748a46eb9SPierre Jolivet if (point >= cStart && point < cEnd) PetscCall(DMLabelClearValue(label, point, values[v])); 348f402d5e4SToby Isaac } 3499566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(pointIS, &points)); 3509566063dSJacob Faibussowitsch PetscCall(ISDestroy(&pointIS)); 351f402d5e4SToby Isaac } 3529566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(valueIS, &values)); 3539566063dSJacob Faibussowitsch PetscCall(ISDestroy(&valueIS)); 354f402d5e4SToby Isaac PetscFunctionReturn(0); 355f402d5e4SToby Isaac } 356f402d5e4SToby Isaac 35759eef20bSToby Isaac /* take (oldEnd, added) pairs, ordered by height and convert them to (oldstart, newstart) pairs, ordered by ascending 35859eef20bSToby Isaac * index (skipping first, which is (0,0)) */ 3599371c9d4SSatish Balay static inline PetscErrorCode DMPlexShiftPointSetUp_Internal(PetscInt depth, PetscInt depthShift[]) { 3602582d50cSToby Isaac PetscInt d, off = 0; 3612582d50cSToby Isaac 3622582d50cSToby Isaac PetscFunctionBegin; 36359eef20bSToby Isaac /* sort by (oldend): yes this is an O(n^2) sort, we expect depth <= 3 */ 3640974a383SToby Isaac for (d = 0; d < depth; d++) { 3652582d50cSToby Isaac PetscInt firstd = d; 3660974a383SToby Isaac PetscInt firstStart = depthShift[2 * d]; 3672582d50cSToby Isaac PetscInt e; 3682582d50cSToby Isaac 3692582d50cSToby Isaac for (e = d + 1; e <= depth; e++) { 3702582d50cSToby Isaac if (depthShift[2 * e] < firstStart) { 3712582d50cSToby Isaac firstd = e; 3722582d50cSToby Isaac firstStart = depthShift[2 * d]; 3732582d50cSToby Isaac } 3742582d50cSToby Isaac } 3752582d50cSToby Isaac if (firstd != d) { 3762582d50cSToby Isaac PetscInt swap[2]; 3772582d50cSToby Isaac 3782582d50cSToby Isaac e = firstd; 3792582d50cSToby Isaac swap[0] = depthShift[2 * d]; 3802582d50cSToby Isaac swap[1] = depthShift[2 * d + 1]; 3812582d50cSToby Isaac depthShift[2 * d] = depthShift[2 * e]; 3822582d50cSToby Isaac depthShift[2 * d + 1] = depthShift[2 * e + 1]; 3832582d50cSToby Isaac depthShift[2 * e] = swap[0]; 3842582d50cSToby Isaac depthShift[2 * e + 1] = swap[1]; 3852582d50cSToby Isaac } 3862582d50cSToby Isaac } 3872582d50cSToby Isaac /* convert (oldstart, added) to (oldstart, newstart) */ 3880974a383SToby Isaac for (d = 0; d <= depth; d++) { 3892582d50cSToby Isaac off += depthShift[2 * d + 1]; 39059eef20bSToby Isaac depthShift[2 * d + 1] = depthShift[2 * d] + off; 3912582d50cSToby Isaac } 3922582d50cSToby Isaac PetscFunctionReturn(0); 3932582d50cSToby Isaac } 3942582d50cSToby Isaac 3952582d50cSToby Isaac /* depthShift is a list of (old, new) pairs */ 3969371c9d4SSatish Balay static inline PetscInt DMPlexShiftPoint_Internal(PetscInt p, PetscInt depth, PetscInt depthShift[]) { 3972582d50cSToby Isaac PetscInt d; 3982582d50cSToby Isaac PetscInt newOff = 0; 3992582d50cSToby Isaac 4002582d50cSToby Isaac for (d = 0; d <= depth; d++) { 4012582d50cSToby Isaac if (p < depthShift[2 * d]) return p + newOff; 4022582d50cSToby Isaac else newOff = depthShift[2 * d + 1] - depthShift[2 * d]; 4032582d50cSToby Isaac } 4040974a383SToby Isaac return p + newOff; 4052582d50cSToby Isaac } 4062582d50cSToby Isaac 4072582d50cSToby Isaac /* depthShift is a list of (old, new) pairs */ 4089371c9d4SSatish Balay static inline PetscInt DMPlexShiftPointInverse_Internal(PetscInt p, PetscInt depth, PetscInt depthShift[]) { 4092582d50cSToby Isaac PetscInt d; 4102582d50cSToby Isaac PetscInt newOff = 0; 4112582d50cSToby Isaac 4122582d50cSToby Isaac for (d = 0; d <= depth; d++) { 4132582d50cSToby Isaac if (p < depthShift[2 * d + 1]) return p + newOff; 4142582d50cSToby Isaac else newOff = depthShift[2 * d] - depthShift[2 * d + 1]; 4152582d50cSToby Isaac } 4160974a383SToby Isaac return p + newOff; 417cd0c2139SMatthew G Knepley } 418cd0c2139SMatthew G Knepley 4199371c9d4SSatish Balay static PetscErrorCode DMPlexShiftSizes_Internal(DM dm, PetscInt depthShift[], DM dmNew) { 420cd0c2139SMatthew G Knepley PetscInt depth = 0, d, pStart, pEnd, p; 421fa8e8ae5SToby Isaac DMLabel depthLabel; 422cd0c2139SMatthew G Knepley 423cd0c2139SMatthew G Knepley PetscFunctionBegin; 4249566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepth(dm, &depth)); 425cd0c2139SMatthew G Knepley if (depth < 0) PetscFunctionReturn(0); 426cd0c2139SMatthew G Knepley /* Step 1: Expand chart */ 4279566063dSJacob Faibussowitsch PetscCall(DMPlexGetChart(dm, &pStart, &pEnd)); 4280974a383SToby Isaac pEnd = DMPlexShiftPoint_Internal(pEnd, depth, depthShift); 4299566063dSJacob Faibussowitsch PetscCall(DMPlexSetChart(dmNew, pStart, pEnd)); 4309566063dSJacob Faibussowitsch PetscCall(DMCreateLabel(dmNew, "depth")); 4319566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthLabel(dmNew, &depthLabel)); 4329566063dSJacob Faibussowitsch PetscCall(DMCreateLabel(dmNew, "celltype")); 433cd0c2139SMatthew G Knepley /* Step 2: Set cone and support sizes */ 434cd0c2139SMatthew G Knepley for (d = 0; d <= depth; ++d) { 435fa8e8ae5SToby Isaac PetscInt pStartNew, pEndNew; 436fa8e8ae5SToby Isaac IS pIS; 437fa8e8ae5SToby Isaac 4389566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthStratum(dm, d, &pStart, &pEnd)); 439fa8e8ae5SToby Isaac pStartNew = DMPlexShiftPoint_Internal(pStart, depth, depthShift); 440fa8e8ae5SToby Isaac pEndNew = DMPlexShiftPoint_Internal(pEnd, depth, depthShift); 4419566063dSJacob Faibussowitsch PetscCall(ISCreateStride(PETSC_COMM_SELF, pEndNew - pStartNew, pStartNew, 1, &pIS)); 4429566063dSJacob Faibussowitsch PetscCall(DMLabelSetStratumIS(depthLabel, d, pIS)); 4439566063dSJacob Faibussowitsch PetscCall(ISDestroy(&pIS)); 444cd0c2139SMatthew G Knepley for (p = pStart; p < pEnd; ++p) { 4452582d50cSToby Isaac PetscInt newp = DMPlexShiftPoint_Internal(p, depth, depthShift); 446cd0c2139SMatthew G Knepley PetscInt size; 447412e9a14SMatthew G. Knepley DMPolytopeType ct; 448cd0c2139SMatthew G Knepley 4499566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, p, &size)); 4509566063dSJacob Faibussowitsch PetscCall(DMPlexSetConeSize(dmNew, newp, size)); 4519566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dm, p, &size)); 4529566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupportSize(dmNew, newp, size)); 4539566063dSJacob Faibussowitsch PetscCall(DMPlexGetCellType(dm, p, &ct)); 4549566063dSJacob Faibussowitsch PetscCall(DMPlexSetCellType(dmNew, newp, ct)); 455cd0c2139SMatthew G Knepley } 456cd0c2139SMatthew G Knepley } 457cd0c2139SMatthew G Knepley PetscFunctionReturn(0); 458cd0c2139SMatthew G Knepley } 459cd0c2139SMatthew G Knepley 4609371c9d4SSatish Balay static PetscErrorCode DMPlexShiftPoints_Internal(DM dm, PetscInt depthShift[], DM dmNew) { 4612582d50cSToby Isaac PetscInt *newpoints; 4622582d50cSToby Isaac PetscInt depth = 0, maxConeSize, maxSupportSize, maxConeSizeNew, maxSupportSizeNew, pStart, pEnd, p; 463cd0c2139SMatthew G Knepley 464cd0c2139SMatthew G Knepley PetscFunctionBegin; 4659566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepth(dm, &depth)); 466cd0c2139SMatthew G Knepley if (depth < 0) PetscFunctionReturn(0); 4679566063dSJacob Faibussowitsch PetscCall(DMPlexGetMaxSizes(dm, &maxConeSize, &maxSupportSize)); 4689566063dSJacob Faibussowitsch PetscCall(DMPlexGetMaxSizes(dmNew, &maxConeSizeNew, &maxSupportSizeNew)); 4699566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(PetscMax(PetscMax(maxConeSize, maxSupportSize), PetscMax(maxConeSizeNew, maxSupportSizeNew)), &newpoints)); 470cd0c2139SMatthew G Knepley /* Step 5: Set cones and supports */ 4719566063dSJacob Faibussowitsch PetscCall(DMPlexGetChart(dm, &pStart, &pEnd)); 472cd0c2139SMatthew G Knepley for (p = pStart; p < pEnd; ++p) { 473cd0c2139SMatthew G Knepley const PetscInt *points = NULL, *orientations = NULL; 4742582d50cSToby Isaac PetscInt size, sizeNew, i, newp = DMPlexShiftPoint_Internal(p, depth, depthShift); 475cd0c2139SMatthew G Knepley 4769566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, p, &size)); 4779566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, p, &points)); 4789566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeOrientation(dm, p, &orientations)); 479ad540459SPierre Jolivet for (i = 0; i < size; ++i) newpoints[i] = DMPlexShiftPoint_Internal(points[i], depth, depthShift); 4809566063dSJacob Faibussowitsch PetscCall(DMPlexSetCone(dmNew, newp, newpoints)); 4819566063dSJacob Faibussowitsch PetscCall(DMPlexSetConeOrientation(dmNew, newp, orientations)); 4829566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dm, p, &size)); 4839566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dmNew, newp, &sizeNew)); 4849566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(dm, p, &points)); 485ad540459SPierre Jolivet for (i = 0; i < size; ++i) newpoints[i] = DMPlexShiftPoint_Internal(points[i], depth, depthShift); 486dcbb62e8SMatthew G. Knepley for (i = size; i < sizeNew; ++i) newpoints[i] = 0; 4879566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupport(dmNew, newp, newpoints)); 488cd0c2139SMatthew G Knepley } 4899566063dSJacob Faibussowitsch PetscCall(PetscFree(newpoints)); 490cd0c2139SMatthew G Knepley PetscFunctionReturn(0); 491cd0c2139SMatthew G Knepley } 492cd0c2139SMatthew G Knepley 4939371c9d4SSatish Balay static PetscErrorCode DMPlexShiftCoordinates_Internal(DM dm, PetscInt depthShift[], DM dmNew) { 494cd0c2139SMatthew G Knepley PetscSection coordSection, newCoordSection; 495cd0c2139SMatthew G Knepley Vec coordinates, newCoordinates; 496cd0c2139SMatthew G Knepley PetscScalar *coords, *newCoords; 497f2b8cce1SMatthew G. Knepley PetscInt coordSize, sStart, sEnd; 498f2b8cce1SMatthew G. Knepley PetscInt dim, depth = 0, cStart, cEnd, cStartNew, cEndNew, c, vStart, vEnd, vStartNew, vEndNew, v; 499f2b8cce1SMatthew G. Knepley PetscBool hasCells; 500cd0c2139SMatthew G Knepley 501cd0c2139SMatthew G Knepley PetscFunctionBegin; 5029566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDim(dm, &dim)); 5039566063dSJacob Faibussowitsch PetscCall(DMSetCoordinateDim(dmNew, dim)); 5049566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepth(dm, &depth)); 505cd0c2139SMatthew G Knepley /* Step 8: Convert coordinates */ 5069566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthStratum(dm, 0, &vStart, &vEnd)); 5079566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(dm, 0, &cStart, &cEnd)); 5089566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthStratum(dmNew, 0, &vStartNew, &vEndNew)); 5099566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(dmNew, 0, &cStartNew, &cEndNew)); 5109566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateSection(dm, &coordSection)); 5119566063dSJacob Faibussowitsch PetscCall(PetscSectionCreate(PetscObjectComm((PetscObject)dm), &newCoordSection)); 5129566063dSJacob Faibussowitsch PetscCall(PetscSectionSetNumFields(newCoordSection, 1)); 5139566063dSJacob Faibussowitsch PetscCall(PetscSectionSetFieldComponents(newCoordSection, 0, dim)); 5149566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(coordSection, &sStart, &sEnd)); 515f2b8cce1SMatthew G. Knepley hasCells = sStart == cStart ? PETSC_TRUE : PETSC_FALSE; 5169566063dSJacob Faibussowitsch PetscCall(PetscSectionSetChart(newCoordSection, hasCells ? cStartNew : vStartNew, vEndNew)); 517f2b8cce1SMatthew G. Knepley if (hasCells) { 518f2b8cce1SMatthew G. Knepley for (c = cStart; c < cEnd; ++c) { 519f2b8cce1SMatthew G. Knepley PetscInt cNew = DMPlexShiftPoint_Internal(c, depth, depthShift), dof; 520f2b8cce1SMatthew G. Knepley 5219566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(coordSection, c, &dof)); 5229566063dSJacob Faibussowitsch PetscCall(PetscSectionSetDof(newCoordSection, cNew, dof)); 5239566063dSJacob Faibussowitsch PetscCall(PetscSectionSetFieldDof(newCoordSection, cNew, 0, dof)); 524f2b8cce1SMatthew G. Knepley } 525f2b8cce1SMatthew G. Knepley } 526cd0c2139SMatthew G Knepley for (v = vStartNew; v < vEndNew; ++v) { 5279566063dSJacob Faibussowitsch PetscCall(PetscSectionSetDof(newCoordSection, v, dim)); 5289566063dSJacob Faibussowitsch PetscCall(PetscSectionSetFieldDof(newCoordSection, v, 0, dim)); 529cd0c2139SMatthew G Knepley } 5309566063dSJacob Faibussowitsch PetscCall(PetscSectionSetUp(newCoordSection)); 5319566063dSJacob Faibussowitsch PetscCall(DMSetCoordinateSection(dmNew, PETSC_DETERMINE, newCoordSection)); 5329566063dSJacob Faibussowitsch PetscCall(PetscSectionGetStorageSize(newCoordSection, &coordSize)); 5339566063dSJacob Faibussowitsch PetscCall(VecCreate(PETSC_COMM_SELF, &newCoordinates)); 5349566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)newCoordinates, "coordinates")); 5359566063dSJacob Faibussowitsch PetscCall(VecSetSizes(newCoordinates, coordSize, PETSC_DETERMINE)); 5369566063dSJacob Faibussowitsch PetscCall(VecSetBlockSize(newCoordinates, dim)); 5379566063dSJacob Faibussowitsch PetscCall(VecSetType(newCoordinates, VECSTANDARD)); 5389566063dSJacob Faibussowitsch PetscCall(DMSetCoordinatesLocal(dmNew, newCoordinates)); 5399566063dSJacob Faibussowitsch PetscCall(DMGetCoordinatesLocal(dm, &coordinates)); 5409566063dSJacob Faibussowitsch PetscCall(VecGetArray(coordinates, &coords)); 5419566063dSJacob Faibussowitsch PetscCall(VecGetArray(newCoordinates, &newCoords)); 542f2b8cce1SMatthew G. Knepley if (hasCells) { 543f2b8cce1SMatthew G. Knepley for (c = cStart; c < cEnd; ++c) { 544f2b8cce1SMatthew G. Knepley PetscInt cNew = DMPlexShiftPoint_Internal(c, depth, depthShift), dof, off, noff, d; 545f2b8cce1SMatthew G. Knepley 5469566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(coordSection, c, &dof)); 5479566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(coordSection, c, &off)); 5489566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(newCoordSection, cNew, &noff)); 549f2b8cce1SMatthew G. Knepley for (d = 0; d < dof; ++d) newCoords[noff + d] = coords[off + d]; 550f2b8cce1SMatthew G. Knepley } 551f2b8cce1SMatthew G. Knepley } 552cd0c2139SMatthew G Knepley for (v = vStart; v < vEnd; ++v) { 553cd0c2139SMatthew G Knepley PetscInt dof, off, noff, d; 554cd0c2139SMatthew G Knepley 5559566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(coordSection, v, &dof)); 5569566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(coordSection, v, &off)); 5579566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(newCoordSection, DMPlexShiftPoint_Internal(v, depth, depthShift), &noff)); 558f2b8cce1SMatthew G. Knepley for (d = 0; d < dof; ++d) newCoords[noff + d] = coords[off + d]; 559cd0c2139SMatthew G Knepley } 5609566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(coordinates, &coords)); 5619566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(newCoordinates, &newCoords)); 5629566063dSJacob Faibussowitsch PetscCall(VecDestroy(&newCoordinates)); 5639566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&newCoordSection)); 564cd0c2139SMatthew G Knepley PetscFunctionReturn(0); 565cd0c2139SMatthew G Knepley } 566cd0c2139SMatthew G Knepley 5679371c9d4SSatish Balay static PetscErrorCode DMPlexShiftSF_Single(DM dm, PetscInt depthShift[], PetscSF sf, PetscSF sfNew) { 568cd0c2139SMatthew G Knepley const PetscSFNode *remotePoints; 569cd0c2139SMatthew G Knepley PetscSFNode *gremotePoints; 570cd0c2139SMatthew G Knepley const PetscInt *localPoints; 571cd0c2139SMatthew G Knepley PetscInt *glocalPoints, *newLocation, *newRemoteLocation; 5720e33faafSMatthew G. Knepley PetscInt numRoots, numLeaves, l, pStart, pEnd, depth = 0, totShift = 0; 573cd0c2139SMatthew G Knepley 574cd0c2139SMatthew G Knepley PetscFunctionBegin; 5759566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepth(dm, &depth)); 5769566063dSJacob Faibussowitsch PetscCall(DMPlexGetChart(dm, &pStart, &pEnd)); 5779566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(sf, &numRoots, &numLeaves, &localPoints, &remotePoints)); 5786e21efdcSToby Isaac totShift = DMPlexShiftPoint_Internal(pEnd, depth, depthShift) - pEnd; 579cd0c2139SMatthew G Knepley if (numRoots >= 0) { 5809566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(numRoots, &newLocation, pEnd - pStart, &newRemoteLocation)); 5810e33faafSMatthew G. Knepley for (l = 0; l < numRoots; ++l) newLocation[l] = DMPlexShiftPoint_Internal(l, depth, depthShift); 5829566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(sf, MPIU_INT, newLocation, newRemoteLocation, MPI_REPLACE)); 5839566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(sf, MPIU_INT, newLocation, newRemoteLocation, MPI_REPLACE)); 5849566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(numLeaves, &glocalPoints)); 5859566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(numLeaves, &gremotePoints)); 586cd0c2139SMatthew G Knepley for (l = 0; l < numLeaves; ++l) { 5872582d50cSToby Isaac glocalPoints[l] = DMPlexShiftPoint_Internal(localPoints[l], depth, depthShift); 588cd0c2139SMatthew G Knepley gremotePoints[l].rank = remotePoints[l].rank; 589cd0c2139SMatthew G Knepley gremotePoints[l].index = newRemoteLocation[localPoints[l]]; 590cd0c2139SMatthew G Knepley } 5919566063dSJacob Faibussowitsch PetscCall(PetscFree2(newLocation, newRemoteLocation)); 5929566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(sfNew, numRoots + totShift, numLeaves, glocalPoints, PETSC_OWN_POINTER, gremotePoints, PETSC_OWN_POINTER)); 5930e33faafSMatthew G. Knepley } 5940e33faafSMatthew G. Knepley PetscFunctionReturn(0); 5950e33faafSMatthew G. Knepley } 5960e33faafSMatthew G. Knepley 5979371c9d4SSatish Balay static PetscErrorCode DMPlexShiftSF_Internal(DM dm, PetscInt depthShift[], DM dmNew) { 5980e33faafSMatthew G. Knepley PetscSF sfPoint, sfPointNew; 5990e33faafSMatthew G. Knepley PetscBool useNatural; 6000e33faafSMatthew G. Knepley 6010e33faafSMatthew G. Knepley PetscFunctionBegin; 6020e33faafSMatthew G. Knepley /* Step 9: Convert pointSF */ 6039566063dSJacob Faibussowitsch PetscCall(DMGetPointSF(dm, &sfPoint)); 6049566063dSJacob Faibussowitsch PetscCall(DMGetPointSF(dmNew, &sfPointNew)); 6059566063dSJacob Faibussowitsch PetscCall(DMPlexShiftSF_Single(dm, depthShift, sfPoint, sfPointNew)); 6060e33faafSMatthew G. Knepley /* Step 9b: Convert naturalSF */ 6079566063dSJacob Faibussowitsch PetscCall(DMGetUseNatural(dm, &useNatural)); 6080e33faafSMatthew G. Knepley if (useNatural) { 6090e33faafSMatthew G. Knepley PetscSF sfNat, sfNatNew; 6100e33faafSMatthew G. Knepley 6119566063dSJacob Faibussowitsch PetscCall(DMSetUseNatural(dmNew, useNatural)); 6129566063dSJacob Faibussowitsch PetscCall(DMGetNaturalSF(dm, &sfNat)); 6139566063dSJacob Faibussowitsch PetscCall(DMGetNaturalSF(dmNew, &sfNatNew)); 6149566063dSJacob Faibussowitsch PetscCall(DMPlexShiftSF_Single(dm, depthShift, sfNat, sfNatNew)); 615cd0c2139SMatthew G Knepley } 616cd0c2139SMatthew G Knepley PetscFunctionReturn(0); 617cd0c2139SMatthew G Knepley } 618cd0c2139SMatthew G Knepley 6199371c9d4SSatish Balay static PetscErrorCode DMPlexShiftLabels_Internal(DM dm, PetscInt depthShift[], DM dmNew) { 620d56405f8SMatthew G. Knepley PetscInt depth = 0, numLabels, l; 621cd0c2139SMatthew G Knepley 622cd0c2139SMatthew G Knepley PetscFunctionBegin; 6239566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepth(dm, &depth)); 624cd0c2139SMatthew G Knepley /* Step 10: Convert labels */ 6259566063dSJacob Faibussowitsch PetscCall(DMGetNumLabels(dm, &numLabels)); 626cd0c2139SMatthew G Knepley for (l = 0; l < numLabels; ++l) { 627cd0c2139SMatthew G Knepley DMLabel label, newlabel; 628cd0c2139SMatthew G Knepley const char *lname; 629fa8e8ae5SToby Isaac PetscBool isDepth, isDim; 630cd0c2139SMatthew G Knepley IS valueIS; 631cd0c2139SMatthew G Knepley const PetscInt *values; 632cd0c2139SMatthew G Knepley PetscInt numValues, val; 633cd0c2139SMatthew G Knepley 6349566063dSJacob Faibussowitsch PetscCall(DMGetLabelName(dm, l, &lname)); 6359566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(lname, "depth", &isDepth)); 636cd0c2139SMatthew G Knepley if (isDepth) continue; 6379566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(lname, "dim", &isDim)); 638fa8e8ae5SToby Isaac if (isDim) continue; 6399566063dSJacob Faibussowitsch PetscCall(DMCreateLabel(dmNew, lname)); 6409566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, lname, &label)); 6419566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dmNew, lname, &newlabel)); 6429566063dSJacob Faibussowitsch PetscCall(DMLabelGetDefaultValue(label, &val)); 6439566063dSJacob Faibussowitsch PetscCall(DMLabelSetDefaultValue(newlabel, val)); 6449566063dSJacob Faibussowitsch PetscCall(DMLabelGetValueIS(label, &valueIS)); 6459566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(valueIS, &numValues)); 6469566063dSJacob Faibussowitsch PetscCall(ISGetIndices(valueIS, &values)); 647cd0c2139SMatthew G Knepley for (val = 0; val < numValues; ++val) { 648cd0c2139SMatthew G Knepley IS pointIS; 649cd0c2139SMatthew G Knepley const PetscInt *points; 650cd0c2139SMatthew G Knepley PetscInt numPoints, p; 651cd0c2139SMatthew G Knepley 6529566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(label, values[val], &pointIS)); 6539566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(pointIS, &numPoints)); 6549566063dSJacob Faibussowitsch PetscCall(ISGetIndices(pointIS, &points)); 655cd0c2139SMatthew G Knepley for (p = 0; p < numPoints; ++p) { 6562582d50cSToby Isaac const PetscInt newpoint = DMPlexShiftPoint_Internal(points[p], depth, depthShift); 657cd0c2139SMatthew G Knepley 6589566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(newlabel, newpoint, values[val])); 659cd0c2139SMatthew G Knepley } 6609566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(pointIS, &points)); 6619566063dSJacob Faibussowitsch PetscCall(ISDestroy(&pointIS)); 662cd0c2139SMatthew G Knepley } 6639566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(valueIS, &values)); 6649566063dSJacob Faibussowitsch PetscCall(ISDestroy(&valueIS)); 665cd0c2139SMatthew G Knepley } 666d56405f8SMatthew G. Knepley PetscFunctionReturn(0); 667d56405f8SMatthew G. Knepley } 668d56405f8SMatthew G. Knepley 6699371c9d4SSatish Balay static PetscErrorCode DMPlexCreateVTKLabel_Internal(DM dm, PetscBool createGhostLabel, DM dmNew) { 670d56405f8SMatthew G. Knepley PetscSF sfPoint; 671d56405f8SMatthew G. Knepley DMLabel vtkLabel, ghostLabel = NULL; 672d56405f8SMatthew G. Knepley const PetscSFNode *leafRemote; 673d56405f8SMatthew G. Knepley const PetscInt *leafLocal; 674d56405f8SMatthew G. Knepley PetscInt cellHeight, cStart, cEnd, c, fStart, fEnd, f, numLeaves, l; 675d56405f8SMatthew G. Knepley PetscMPIInt rank; 676d56405f8SMatthew G. Knepley 677d56405f8SMatthew G. Knepley PetscFunctionBegin; 678cd0c2139SMatthew G Knepley /* Step 11: Make label for output (vtk) and to mark ghost points (ghost) */ 6799566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)dm), &rank)); 6809566063dSJacob Faibussowitsch PetscCall(DMGetPointSF(dm, &sfPoint)); 6819566063dSJacob Faibussowitsch PetscCall(DMPlexGetVTKCellHeight(dmNew, &cellHeight)); 6829566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(dm, cellHeight, &cStart, &cEnd)); 6839566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(sfPoint, NULL, &numLeaves, &leafLocal, &leafRemote)); 6849566063dSJacob Faibussowitsch PetscCall(DMCreateLabel(dmNew, "vtk")); 6859566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dmNew, "vtk", &vtkLabel)); 686d56405f8SMatthew G. Knepley if (createGhostLabel) { 6879566063dSJacob Faibussowitsch PetscCall(DMCreateLabel(dmNew, "ghost")); 6889566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dmNew, "ghost", &ghostLabel)); 689d56405f8SMatthew G. Knepley } 690cd0c2139SMatthew G Knepley for (l = 0, c = cStart; l < numLeaves && c < cEnd; ++l, ++c) { 69148a46eb9SPierre Jolivet for (; c < leafLocal[l] && c < cEnd; ++c) PetscCall(DMLabelSetValue(vtkLabel, c, 1)); 692cd0c2139SMatthew G Knepley if (leafLocal[l] >= cEnd) break; 693cd0c2139SMatthew G Knepley if (leafRemote[l].rank == rank) { 6949566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(vtkLabel, c, 1)); 6951baa6e33SBarry Smith } else if (ghostLabel) PetscCall(DMLabelSetValue(ghostLabel, c, 2)); 696cd0c2139SMatthew G Knepley } 69748a46eb9SPierre Jolivet for (; c < cEnd; ++c) PetscCall(DMLabelSetValue(vtkLabel, c, 1)); 698d56405f8SMatthew G. Knepley if (ghostLabel) { 6999566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(dmNew, 1, &fStart, &fEnd)); 700cd0c2139SMatthew G Knepley for (f = fStart; f < fEnd; ++f) { 701cd0c2139SMatthew G Knepley PetscInt numCells; 702cd0c2139SMatthew G Knepley 7039566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dmNew, f, &numCells)); 704cd0c2139SMatthew G Knepley if (numCells < 2) { 7059566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(ghostLabel, f, 1)); 706cd0c2139SMatthew G Knepley } else { 707cd0c2139SMatthew G Knepley const PetscInt *cells = NULL; 708cd0c2139SMatthew G Knepley PetscInt vA, vB; 709cd0c2139SMatthew G Knepley 7109566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(dmNew, f, &cells)); 7119566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(vtkLabel, cells[0], &vA)); 7129566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(vtkLabel, cells[1], &vB)); 7139566063dSJacob Faibussowitsch if (vA != 1 && vB != 1) PetscCall(DMLabelSetValue(ghostLabel, f, 1)); 714cd0c2139SMatthew G Knepley } 715cd0c2139SMatthew G Knepley } 716d56405f8SMatthew G. Knepley } 717cd0c2139SMatthew G Knepley PetscFunctionReturn(0); 718cd0c2139SMatthew G Knepley } 719cd0c2139SMatthew G Knepley 7209371c9d4SSatish Balay static PetscErrorCode DMPlexShiftTree_Internal(DM dm, PetscInt depthShift[], DM dmNew) { 721ca04dac2SToby Isaac DM refTree; 722ca04dac2SToby Isaac PetscSection pSec; 723ca04dac2SToby Isaac PetscInt *parents, *childIDs; 724ca04dac2SToby Isaac 725ca04dac2SToby Isaac PetscFunctionBegin; 7269566063dSJacob Faibussowitsch PetscCall(DMPlexGetReferenceTree(dm, &refTree)); 7279566063dSJacob Faibussowitsch PetscCall(DMPlexSetReferenceTree(dmNew, refTree)); 7289566063dSJacob Faibussowitsch PetscCall(DMPlexGetTree(dm, &pSec, &parents, &childIDs, NULL, NULL)); 729ca04dac2SToby Isaac if (pSec) { 7302582d50cSToby Isaac PetscInt p, pStart, pEnd, *parentsShifted, pStartShifted, pEndShifted, depth; 731fb4630b5SToby Isaac PetscInt *childIDsShifted; 732ca04dac2SToby Isaac PetscSection pSecShifted; 733ca04dac2SToby Isaac 7349566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(pSec, &pStart, &pEnd)); 7359566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepth(dm, &depth)); 7362582d50cSToby Isaac pStartShifted = DMPlexShiftPoint_Internal(pStart, depth, depthShift); 7372582d50cSToby Isaac pEndShifted = DMPlexShiftPoint_Internal(pEnd, depth, depthShift); 7389566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(pEndShifted - pStartShifted, &parentsShifted, pEndShifted - pStartShifted, &childIDsShifted)); 7399566063dSJacob Faibussowitsch PetscCall(PetscSectionCreate(PetscObjectComm((PetscObject)dmNew), &pSecShifted)); 7409566063dSJacob Faibussowitsch PetscCall(PetscSectionSetChart(pSecShifted, pStartShifted, pEndShifted)); 741ca04dac2SToby Isaac for (p = pStartShifted; p < pEndShifted; p++) { 742fb4630b5SToby Isaac /* start off assuming no children */ 7439566063dSJacob Faibussowitsch PetscCall(PetscSectionSetDof(pSecShifted, p, 0)); 744fb4630b5SToby Isaac } 745fb4630b5SToby Isaac for (p = pStart; p < pEnd; p++) { 746fb4630b5SToby Isaac PetscInt dof; 747fb4630b5SToby Isaac PetscInt pNew = DMPlexShiftPoint_Internal(p, depth, depthShift); 748ca04dac2SToby Isaac 7499566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(pSec, p, &dof)); 7509566063dSJacob Faibussowitsch PetscCall(PetscSectionSetDof(pSecShifted, pNew, dof)); 751ca04dac2SToby Isaac } 7529566063dSJacob Faibussowitsch PetscCall(PetscSectionSetUp(pSecShifted)); 753fb4630b5SToby Isaac for (p = pStart; p < pEnd; p++) { 754fb4630b5SToby Isaac PetscInt dof; 755fb4630b5SToby Isaac PetscInt pNew = DMPlexShiftPoint_Internal(p, depth, depthShift); 756fb4630b5SToby Isaac 7579566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(pSec, p, &dof)); 758fb4630b5SToby Isaac if (dof) { 759fb4630b5SToby Isaac PetscInt off, offNew; 760fb4630b5SToby Isaac 7619566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(pSec, p, &off)); 7629566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(pSecShifted, pNew, &offNew)); 763fb4630b5SToby Isaac parentsShifted[offNew] = DMPlexShiftPoint_Internal(parents[off], depth, depthShift); 764fb4630b5SToby Isaac childIDsShifted[offNew] = childIDs[off]; 765fb4630b5SToby Isaac } 766fb4630b5SToby Isaac } 7679566063dSJacob Faibussowitsch PetscCall(DMPlexSetTree(dmNew, pSecShifted, parentsShifted, childIDsShifted)); 7689566063dSJacob Faibussowitsch PetscCall(PetscFree2(parentsShifted, childIDsShifted)); 7699566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&pSecShifted)); 770ca04dac2SToby Isaac } 771ca04dac2SToby Isaac PetscFunctionReturn(0); 772ca04dac2SToby Isaac } 773ca04dac2SToby Isaac 7749371c9d4SSatish Balay static PetscErrorCode DMPlexConstructGhostCells_Internal(DM dm, DMLabel label, PetscInt *numGhostCells, DM gdm) { 775da97024aSMatthew G. Knepley PetscSF sf; 776cd0c2139SMatthew G Knepley IS valueIS; 777da97024aSMatthew G. Knepley const PetscInt *values, *leaves; 778cd0c2139SMatthew G Knepley PetscInt *depthShift; 7792582d50cSToby Isaac PetscInt d, depth = 0, nleaves, loc, Ng, numFS, fs, fStart, fEnd, ghostCell, cEnd, c; 7804fb89dddSMatthew G. Knepley const PetscReal *maxCell, *Lstart, *L; 781cd0c2139SMatthew G Knepley 782cd0c2139SMatthew G Knepley PetscFunctionBegin; 7839566063dSJacob Faibussowitsch PetscCall(DMGetPointSF(dm, &sf)); 7849566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(sf, NULL, &nleaves, &leaves, NULL)); 785da97024aSMatthew G. Knepley nleaves = PetscMax(0, nleaves); 7869566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(dm, 1, &fStart, &fEnd)); 787cd0c2139SMatthew G Knepley /* Count ghost cells */ 7889566063dSJacob Faibussowitsch PetscCall(DMLabelGetValueIS(label, &valueIS)); 7899566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(valueIS, &numFS)); 7909566063dSJacob Faibussowitsch PetscCall(ISGetIndices(valueIS, &values)); 7914a6cfa73SMatthew G. Knepley Ng = 0; 792cd0c2139SMatthew G Knepley for (fs = 0; fs < numFS; ++fs) { 79346c796b9SMatthew G. Knepley IS faceIS; 79446c796b9SMatthew G. Knepley const PetscInt *faces; 79546c796b9SMatthew G. Knepley PetscInt numFaces, f, numBdFaces = 0; 796cd0c2139SMatthew G Knepley 7979566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(label, values[fs], &faceIS)); 7989566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(faceIS, &numFaces)); 7999566063dSJacob Faibussowitsch PetscCall(ISGetIndices(faceIS, &faces)); 80046c796b9SMatthew G. Knepley for (f = 0; f < numFaces; ++f) { 801ca04dac2SToby Isaac PetscInt numChildren; 802ca04dac2SToby Isaac 8039566063dSJacob Faibussowitsch PetscCall(PetscFindInt(faces[f], nleaves, leaves, &loc)); 8049566063dSJacob Faibussowitsch PetscCall(DMPlexGetTreeChildren(dm, faces[f], &numChildren, NULL)); 805ca04dac2SToby Isaac /* non-local and ancestors points don't get to register ghosts */ 806ca04dac2SToby Isaac if (loc >= 0 || numChildren) continue; 80746c796b9SMatthew G. Knepley if ((faces[f] >= fStart) && (faces[f] < fEnd)) ++numBdFaces; 80846c796b9SMatthew G. Knepley } 8094a6cfa73SMatthew G. Knepley Ng += numBdFaces; 8109566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(faceIS, &faces)); 8119566063dSJacob Faibussowitsch PetscCall(ISDestroy(&faceIS)); 812cd0c2139SMatthew G Knepley } 8139566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepth(dm, &depth)); 8149566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(2 * (depth + 1), &depthShift)); 8152582d50cSToby Isaac for (d = 0; d <= depth; d++) { 81659eef20bSToby Isaac PetscInt dEnd; 8172582d50cSToby Isaac 8189566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthStratum(dm, d, NULL, &dEnd)); 81959eef20bSToby Isaac depthShift[2 * d] = dEnd; 8202582d50cSToby Isaac depthShift[2 * d + 1] = 0; 8212582d50cSToby Isaac } 8222582d50cSToby Isaac if (depth >= 0) depthShift[2 * depth + 1] = Ng; 8239566063dSJacob Faibussowitsch PetscCall(DMPlexShiftPointSetUp_Internal(depth, depthShift)); 8249566063dSJacob Faibussowitsch PetscCall(DMPlexShiftSizes_Internal(dm, depthShift, gdm)); 825cd0c2139SMatthew G Knepley /* Step 3: Set cone/support sizes for new points */ 8269566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(dm, 0, NULL, &cEnd)); 82748a46eb9SPierre Jolivet for (c = cEnd; c < cEnd + Ng; ++c) PetscCall(DMPlexSetConeSize(gdm, c, 1)); 828cd0c2139SMatthew G Knepley for (fs = 0; fs < numFS; ++fs) { 829cd0c2139SMatthew G Knepley IS faceIS; 830cd0c2139SMatthew G Knepley const PetscInt *faces; 831cd0c2139SMatthew G Knepley PetscInt numFaces, f; 832cd0c2139SMatthew G Knepley 8339566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(label, values[fs], &faceIS)); 8349566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(faceIS, &numFaces)); 8359566063dSJacob Faibussowitsch PetscCall(ISGetIndices(faceIS, &faces)); 836cd0c2139SMatthew G Knepley for (f = 0; f < numFaces; ++f) { 837ca04dac2SToby Isaac PetscInt size, numChildren; 838cd0c2139SMatthew G Knepley 8399566063dSJacob Faibussowitsch PetscCall(PetscFindInt(faces[f], nleaves, leaves, &loc)); 8409566063dSJacob Faibussowitsch PetscCall(DMPlexGetTreeChildren(dm, faces[f], &numChildren, NULL)); 841ca04dac2SToby Isaac if (loc >= 0 || numChildren) continue; 84246c796b9SMatthew G. Knepley if ((faces[f] < fStart) || (faces[f] >= fEnd)) continue; 8439566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dm, faces[f], &size)); 84463a3b9bcSJacob Faibussowitsch PetscCheck(size == 1, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "DM has boundary face %" PetscInt_FMT " with %" PetscInt_FMT " support cells", faces[f], size); 8459566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupportSize(gdm, faces[f] + Ng, 2)); 846cd0c2139SMatthew G Knepley } 8479566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(faceIS, &faces)); 8489566063dSJacob Faibussowitsch PetscCall(ISDestroy(&faceIS)); 849cd0c2139SMatthew G Knepley } 850cd0c2139SMatthew G Knepley /* Step 4: Setup ghosted DM */ 8519566063dSJacob Faibussowitsch PetscCall(DMSetUp(gdm)); 8529566063dSJacob Faibussowitsch PetscCall(DMPlexShiftPoints_Internal(dm, depthShift, gdm)); 853cd0c2139SMatthew G Knepley /* Step 6: Set cones and supports for new points */ 854cd0c2139SMatthew G Knepley ghostCell = cEnd; 855cd0c2139SMatthew G Knepley for (fs = 0; fs < numFS; ++fs) { 856cd0c2139SMatthew G Knepley IS faceIS; 857cd0c2139SMatthew G Knepley const PetscInt *faces; 858cd0c2139SMatthew G Knepley PetscInt numFaces, f; 859cd0c2139SMatthew G Knepley 8609566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(label, values[fs], &faceIS)); 8619566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(faceIS, &numFaces)); 8629566063dSJacob Faibussowitsch PetscCall(ISGetIndices(faceIS, &faces)); 86346c796b9SMatthew G. Knepley for (f = 0; f < numFaces; ++f) { 864ca04dac2SToby Isaac PetscInt newFace = faces[f] + Ng, numChildren; 865cd0c2139SMatthew G Knepley 8669566063dSJacob Faibussowitsch PetscCall(PetscFindInt(faces[f], nleaves, leaves, &loc)); 8679566063dSJacob Faibussowitsch PetscCall(DMPlexGetTreeChildren(dm, faces[f], &numChildren, NULL)); 868ca04dac2SToby Isaac if (loc >= 0 || numChildren) continue; 86946c796b9SMatthew G. Knepley if ((faces[f] < fStart) || (faces[f] >= fEnd)) continue; 8709566063dSJacob Faibussowitsch PetscCall(DMPlexSetCone(gdm, ghostCell, &newFace)); 8719566063dSJacob Faibussowitsch PetscCall(DMPlexInsertSupport(gdm, newFace, 1, ghostCell)); 87246c796b9SMatthew G. Knepley ++ghostCell; 873cd0c2139SMatthew G Knepley } 8749566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(faceIS, &faces)); 8759566063dSJacob Faibussowitsch PetscCall(ISDestroy(&faceIS)); 876cd0c2139SMatthew G Knepley } 8779566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(valueIS, &values)); 8789566063dSJacob Faibussowitsch PetscCall(ISDestroy(&valueIS)); 8799566063dSJacob Faibussowitsch PetscCall(DMPlexShiftCoordinates_Internal(dm, depthShift, gdm)); 8809566063dSJacob Faibussowitsch PetscCall(DMPlexShiftSF_Internal(dm, depthShift, gdm)); 8819566063dSJacob Faibussowitsch PetscCall(DMPlexShiftLabels_Internal(dm, depthShift, gdm)); 8829566063dSJacob Faibussowitsch PetscCall(DMPlexCreateVTKLabel_Internal(dm, PETSC_TRUE, gdm)); 8839566063dSJacob Faibussowitsch PetscCall(DMPlexShiftTree_Internal(dm, depthShift, gdm)); 8849566063dSJacob Faibussowitsch PetscCall(PetscFree(depthShift)); 88548a46eb9SPierre Jolivet for (c = cEnd; c < cEnd + Ng; ++c) PetscCall(DMPlexSetCellType(gdm, c, DM_POLYTOPE_FV_GHOST)); 886966c7b3fSMatthew G. Knepley /* Step 7: Periodicity */ 8874fb89dddSMatthew G. Knepley PetscCall(DMGetPeriodicity(dm, &maxCell, &Lstart, &L)); 8884fb89dddSMatthew G. Knepley PetscCall(DMSetPeriodicity(gdm, maxCell, Lstart, L)); 8894a6cfa73SMatthew G. Knepley if (numGhostCells) *numGhostCells = Ng; 890cd0c2139SMatthew G Knepley PetscFunctionReturn(0); 891cd0c2139SMatthew G Knepley } 892cd0c2139SMatthew G Knepley 893cd0c2139SMatthew G Knepley /*@C 894cd0c2139SMatthew G Knepley DMPlexConstructGhostCells - Construct ghost cells which connect to every boundary face 895cd0c2139SMatthew G Knepley 896cd0c2139SMatthew G Knepley Collective on dm 897cd0c2139SMatthew G Knepley 898cd0c2139SMatthew G Knepley Input Parameters: 899cd0c2139SMatthew G Knepley + dm - The original DM 900cd0c2139SMatthew G Knepley - labelName - The label specifying the boundary faces, or "Face Sets" if this is NULL 901cd0c2139SMatthew G Knepley 902cd0c2139SMatthew G Knepley Output Parameters: 903cd0c2139SMatthew G Knepley + numGhostCells - The number of ghost cells added to the DM 904cd0c2139SMatthew G Knepley - dmGhosted - The new DM 905cd0c2139SMatthew G Knepley 906cd0c2139SMatthew G Knepley Note: If no label exists of that name, one will be created marking all boundary faces 907cd0c2139SMatthew G Knepley 908cd0c2139SMatthew G Knepley Level: developer 909cd0c2139SMatthew G Knepley 910db781477SPatrick Sanan .seealso: `DMCreate()` 91131266bc0SMatthew G. Knepley @*/ 9129371c9d4SSatish Balay PetscErrorCode DMPlexConstructGhostCells(DM dm, const char labelName[], PetscInt *numGhostCells, DM *dmGhosted) { 913cd0c2139SMatthew G Knepley DM gdm; 914cd0c2139SMatthew G Knepley DMLabel label; 915cd0c2139SMatthew G Knepley const char *name = labelName ? labelName : "Face Sets"; 916412e9a14SMatthew G. Knepley PetscInt dim, Ng = 0; 917b0441da4SMatthew G. Knepley PetscBool useCone, useClosure; 918cd0c2139SMatthew G Knepley 919cd0c2139SMatthew G Knepley PetscFunctionBegin; 920cd0c2139SMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 921dadcf809SJacob Faibussowitsch if (numGhostCells) PetscValidIntPointer(numGhostCells, 3); 922cd0c2139SMatthew G Knepley PetscValidPointer(dmGhosted, 4); 9239566063dSJacob Faibussowitsch PetscCall(DMCreate(PetscObjectComm((PetscObject)dm), &gdm)); 9249566063dSJacob Faibussowitsch PetscCall(DMSetType(gdm, DMPLEX)); 9259566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 9269566063dSJacob Faibussowitsch PetscCall(DMSetDimension(gdm, dim)); 9279566063dSJacob Faibussowitsch PetscCall(DMGetBasicAdjacency(dm, &useCone, &useClosure)); 9289566063dSJacob Faibussowitsch PetscCall(DMSetBasicAdjacency(gdm, useCone, useClosure)); 9299566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, name, &label)); 930cd0c2139SMatthew G Knepley if (!label) { 931cd0c2139SMatthew G Knepley /* Get label for boundary faces */ 9329566063dSJacob Faibussowitsch PetscCall(DMCreateLabel(dm, name)); 9339566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, name, &label)); 9349566063dSJacob Faibussowitsch PetscCall(DMPlexMarkBoundaryFaces(dm, 1, label)); 935cd0c2139SMatthew G Knepley } 9369566063dSJacob Faibussowitsch PetscCall(DMPlexConstructGhostCells_Internal(dm, label, &Ng, gdm)); 9379566063dSJacob Faibussowitsch PetscCall(DMCopyDisc(dm, gdm)); 9385de52c6dSVaclav Hapla PetscCall(DMPlexCopy_Internal(dm, PETSC_TRUE, PETSC_TRUE, gdm)); 939cad26855SMatthew G. Knepley gdm->setfromoptionscalled = dm->setfromoptionscalled; 940d80ece95SMatthew G. Knepley if (numGhostCells) *numGhostCells = Ng; 941cd0c2139SMatthew G Knepley *dmGhosted = gdm; 942cd0c2139SMatthew G Knepley PetscFunctionReturn(0); 943cd0c2139SMatthew G Knepley } 944cd0c2139SMatthew G Knepley 9459371c9d4SSatish Balay static PetscErrorCode DivideCells_Private(DM dm, DMLabel label, DMPlexPointQueue queue) { 946accc9626SMatthew G. Knepley PetscInt dim, d, shift = 100, *pStart, *pEnd; 947accc9626SMatthew G. Knepley 948accc9626SMatthew G. Knepley PetscFunctionBegin; 949accc9626SMatthew G. Knepley PetscCall(DMGetDimension(dm, &dim)); 950accc9626SMatthew G. Knepley PetscCall(PetscMalloc2(dim, &pStart, dim, &pEnd)); 95148a46eb9SPierre Jolivet for (d = 0; d < dim; ++d) PetscCall(DMPlexGetDepthStratum(dm, d, &pStart[d], &pEnd[d])); 952accc9626SMatthew G. Knepley while (!DMPlexPointQueueEmpty(queue)) { 953accc9626SMatthew G. Knepley PetscInt cell = -1; 954accc9626SMatthew G. Knepley PetscInt *closure = NULL; 955accc9626SMatthew G. Knepley PetscInt closureSize, cl, cval; 956accc9626SMatthew G. Knepley 957accc9626SMatthew G. Knepley PetscCall(DMPlexPointQueueDequeue(queue, &cell)); 958accc9626SMatthew G. Knepley PetscCall(DMLabelGetValue(label, cell, &cval)); 959accc9626SMatthew G. Knepley PetscCall(DMPlexGetTransitiveClosure(dm, cell, PETSC_TRUE, &closureSize, &closure)); 960accc9626SMatthew G. Knepley /* Mark points in the cell closure that touch the fault */ 961accc9626SMatthew G. Knepley for (d = 0; d < dim; ++d) { 962accc9626SMatthew G. Knepley for (cl = 0; cl < closureSize * 2; cl += 2) { 963accc9626SMatthew G. Knepley const PetscInt clp = closure[cl]; 964accc9626SMatthew G. Knepley PetscInt clval; 965accc9626SMatthew G. Knepley 966accc9626SMatthew G. Knepley if ((clp < pStart[d]) || (clp >= pEnd[d])) continue; 967accc9626SMatthew G. Knepley PetscCall(DMLabelGetValue(label, clp, &clval)); 968accc9626SMatthew G. Knepley if (clval == -1) { 969accc9626SMatthew G. Knepley const PetscInt *cone; 970accc9626SMatthew G. Knepley PetscInt coneSize, c; 971accc9626SMatthew G. Knepley 972accc9626SMatthew G. Knepley /* If a cone point touches the fault, then this point touches the fault */ 973accc9626SMatthew G. Knepley PetscCall(DMPlexGetCone(dm, clp, &cone)); 974accc9626SMatthew G. Knepley PetscCall(DMPlexGetConeSize(dm, clp, &coneSize)); 975accc9626SMatthew G. Knepley for (c = 0; c < coneSize; ++c) { 976accc9626SMatthew G. Knepley PetscInt cpval; 977accc9626SMatthew G. Knepley 978accc9626SMatthew G. Knepley PetscCall(DMLabelGetValue(label, cone[c], &cpval)); 979accc9626SMatthew G. Knepley if (cpval != -1) { 980accc9626SMatthew G. Knepley PetscInt dep; 981accc9626SMatthew G. Knepley 982accc9626SMatthew G. Knepley PetscCall(DMPlexGetPointDepth(dm, clp, &dep)); 983accc9626SMatthew G. Knepley clval = cval < 0 ? -(shift + dep) : shift + dep; 984accc9626SMatthew G. Knepley PetscCall(DMLabelSetValue(label, clp, clval)); 985accc9626SMatthew G. Knepley break; 986accc9626SMatthew G. Knepley } 987accc9626SMatthew G. Knepley } 988accc9626SMatthew G. Knepley } 989accc9626SMatthew G. Knepley /* Mark neighbor cells through marked faces (these cells must also touch the fault) */ 990accc9626SMatthew G. Knepley if (d == dim - 1 && clval != -1) { 991accc9626SMatthew G. Knepley const PetscInt *support; 992accc9626SMatthew G. Knepley PetscInt supportSize, s, nval; 993accc9626SMatthew G. Knepley 994accc9626SMatthew G. Knepley PetscCall(DMPlexGetSupport(dm, clp, &support)); 995accc9626SMatthew G. Knepley PetscCall(DMPlexGetSupportSize(dm, clp, &supportSize)); 996accc9626SMatthew G. Knepley for (s = 0; s < supportSize; ++s) { 997accc9626SMatthew G. Knepley PetscCall(DMLabelGetValue(label, support[s], &nval)); 998accc9626SMatthew G. Knepley if (nval == -1) { 999accc9626SMatthew G. Knepley PetscCall(DMLabelSetValue(label, support[s], clval < 0 ? clval - 1 : clval + 1)); 1000accc9626SMatthew G. Knepley PetscCall(DMPlexPointQueueEnqueue(queue, support[s])); 1001accc9626SMatthew G. Knepley } 1002accc9626SMatthew G. Knepley } 1003accc9626SMatthew G. Knepley } 1004accc9626SMatthew G. Knepley } 1005accc9626SMatthew G. Knepley } 1006accc9626SMatthew G. Knepley PetscCall(DMPlexRestoreTransitiveClosure(dm, cell, PETSC_TRUE, &closureSize, &closure)); 1007accc9626SMatthew G. Knepley } 1008accc9626SMatthew G. Knepley PetscCall(PetscFree2(pStart, pEnd)); 1009accc9626SMatthew G. Knepley PetscFunctionReturn(0); 1010accc9626SMatthew G. Knepley } 1011accc9626SMatthew G. Knepley 1012accc9626SMatthew G. Knepley typedef struct { 1013accc9626SMatthew G. Knepley DM dm; 1014accc9626SMatthew G. Knepley DMPlexPointQueue queue; 1015accc9626SMatthew G. Knepley } PointDivision; 1016accc9626SMatthew G. Knepley 10179371c9d4SSatish Balay static PetscErrorCode divideCell(DMLabel label, PetscInt p, PetscInt val, void *ctx) { 1018accc9626SMatthew G. Knepley PointDivision *div = (PointDivision *)ctx; 1019accc9626SMatthew G. Knepley PetscInt cval = val < 0 ? val - 1 : val + 1; 1020accc9626SMatthew G. Knepley const PetscInt *support; 1021accc9626SMatthew G. Knepley PetscInt supportSize, s; 1022accc9626SMatthew G. Knepley 1023accc9626SMatthew G. Knepley PetscFunctionBegin; 1024accc9626SMatthew G. Knepley PetscCall(DMPlexGetSupport(div->dm, p, &support)); 1025accc9626SMatthew G. Knepley PetscCall(DMPlexGetSupportSize(div->dm, p, &supportSize)); 1026accc9626SMatthew G. Knepley for (s = 0; s < supportSize; ++s) { 1027accc9626SMatthew G. Knepley PetscCall(DMLabelSetValue(label, support[s], cval)); 1028accc9626SMatthew G. Knepley PetscCall(DMPlexPointQueueEnqueue(div->queue, support[s])); 1029accc9626SMatthew G. Knepley } 1030accc9626SMatthew G. Knepley PetscFunctionReturn(0); 1031accc9626SMatthew G. Knepley } 1032accc9626SMatthew G. Knepley 1033accc9626SMatthew G. Knepley /* Mark cells by label propagation */ 10349371c9d4SSatish Balay static PetscErrorCode DMPlexLabelFaultHalo(DM dm, DMLabel faultLabel) { 1035accc9626SMatthew G. Knepley DMPlexPointQueue queue = NULL; 1036accc9626SMatthew G. Knepley PointDivision div; 1037accc9626SMatthew G. Knepley PetscSF pointSF; 1038accc9626SMatthew G. Knepley IS pointIS; 1039accc9626SMatthew G. Knepley const PetscInt *points; 1040accc9626SMatthew G. Knepley PetscBool empty; 1041accc9626SMatthew G. Knepley PetscInt dim, shift = 100, n, i; 1042accc9626SMatthew G. Knepley 1043accc9626SMatthew G. Knepley PetscFunctionBegin; 1044accc9626SMatthew G. Knepley PetscCall(DMGetDimension(dm, &dim)); 1045accc9626SMatthew G. Knepley PetscCall(DMPlexPointQueueCreate(1024, &queue)); 1046accc9626SMatthew G. Knepley div.dm = dm; 1047accc9626SMatthew G. Knepley div.queue = queue; 1048accc9626SMatthew G. Knepley /* Enqueue cells on fault */ 1049accc9626SMatthew G. Knepley PetscCall(DMLabelGetStratumIS(faultLabel, shift + dim, &pointIS)); 1050accc9626SMatthew G. Knepley if (pointIS) { 1051accc9626SMatthew G. Knepley PetscCall(ISGetLocalSize(pointIS, &n)); 1052accc9626SMatthew G. Knepley PetscCall(ISGetIndices(pointIS, &points)); 105348a46eb9SPierre Jolivet for (i = 0; i < n; ++i) PetscCall(DMPlexPointQueueEnqueue(queue, points[i])); 1054accc9626SMatthew G. Knepley PetscCall(ISRestoreIndices(pointIS, &points)); 1055accc9626SMatthew G. Knepley PetscCall(ISDestroy(&pointIS)); 1056accc9626SMatthew G. Knepley } 1057accc9626SMatthew G. Knepley PetscCall(DMLabelGetStratumIS(faultLabel, -(shift + dim), &pointIS)); 1058accc9626SMatthew G. Knepley if (pointIS) { 1059accc9626SMatthew G. Knepley PetscCall(ISGetLocalSize(pointIS, &n)); 1060accc9626SMatthew G. Knepley PetscCall(ISGetIndices(pointIS, &points)); 106148a46eb9SPierre Jolivet for (i = 0; i < n; ++i) PetscCall(DMPlexPointQueueEnqueue(queue, points[i])); 1062accc9626SMatthew G. Knepley PetscCall(ISRestoreIndices(pointIS, &points)); 1063accc9626SMatthew G. Knepley PetscCall(ISDestroy(&pointIS)); 1064accc9626SMatthew G. Knepley } 1065accc9626SMatthew G. Knepley 1066accc9626SMatthew G. Knepley PetscCall(DMGetPointSF(dm, &pointSF)); 1067accc9626SMatthew G. Knepley PetscCall(DMLabelPropagateBegin(faultLabel, pointSF)); 1068accc9626SMatthew G. Knepley /* While edge queue is not empty: */ 1069accc9626SMatthew G. Knepley PetscCall(DMPlexPointQueueEmptyCollective((PetscObject)dm, queue, &empty)); 1070accc9626SMatthew G. Knepley while (!empty) { 1071accc9626SMatthew G. Knepley PetscCall(DivideCells_Private(dm, faultLabel, queue)); 1072accc9626SMatthew G. Knepley PetscCall(DMLabelPropagatePush(faultLabel, pointSF, divideCell, &div)); 1073accc9626SMatthew G. Knepley PetscCall(DMPlexPointQueueEmptyCollective((PetscObject)dm, queue, &empty)); 1074accc9626SMatthew G. Knepley } 1075accc9626SMatthew G. Knepley PetscCall(DMLabelPropagateEnd(faultLabel, pointSF)); 1076accc9626SMatthew G. Knepley PetscCall(DMPlexPointQueueDestroy(&queue)); 1077accc9626SMatthew G. Knepley PetscFunctionReturn(0); 1078accc9626SMatthew G. Knepley } 1079accc9626SMatthew G. Knepley 1080607ab7a9SMatthew G. Knepley /* 1081faedd622SMatthew G. Knepley We are adding three kinds of points here: 1082607ab7a9SMatthew G. Knepley Replicated: Copies of points which exist in the mesh, such as vertices identified across a fault 1083faedd622SMatthew G. Knepley Non-replicated: Points which exist on the fault, but are not replicated 1084b6dfa339SMatthew G. Knepley Ghost: These are shared fault faces which are not owned by this process. These do not produce hybrid cells and do not replicate 1085607ab7a9SMatthew G. Knepley Hybrid: Entirely new points, such as cohesive cells 1086a6ae58d1SMatthew G. Knepley 1087a6ae58d1SMatthew G. Knepley When creating subsequent cohesive cells, we shift the old hybrid cells to the end of the numbering at 1088a6ae58d1SMatthew G. Knepley each depth so that the new split/hybrid points can be inserted as a block. 1089607ab7a9SMatthew G. Knepley */ 10909371c9d4SSatish Balay static PetscErrorCode DMPlexConstructCohesiveCells_Internal(DM dm, DMLabel label, DMLabel splitLabel, DM sdm) { 1091cd0c2139SMatthew G Knepley MPI_Comm comm; 1092607ab7a9SMatthew G. Knepley IS valueIS; 1093607ab7a9SMatthew G. Knepley PetscInt numSP = 0; /* The number of depths for which we have replicated points */ 1094607ab7a9SMatthew G. Knepley const PetscInt *values; /* List of depths for which we have replicated points */ 109518c5995bSMatthew G. Knepley IS *splitIS; 109618c5995bSMatthew G. Knepley IS *unsplitIS; 1097b6dfa339SMatthew G. Knepley IS ghostIS; 1098607ab7a9SMatthew G. Knepley PetscInt *numSplitPoints; /* The number of replicated points at each depth */ 109918c5995bSMatthew G. Knepley PetscInt *numUnsplitPoints; /* The number of non-replicated points at each depth which still give rise to hybrid points */ 110036dbac82SMatthew G. Knepley PetscInt *numHybridPoints; /* The number of new hybrid points at each depth */ 110136dbac82SMatthew G. Knepley PetscInt *numHybridPointsOld; /* The number of existing hybrid points at each depth */ 1102b6dfa339SMatthew G. Knepley PetscInt numGhostPoints; /* The number of unowned, shared fault faces */ 1103607ab7a9SMatthew G. Knepley const PetscInt **splitPoints; /* Replicated points for each depth */ 110418c5995bSMatthew G. Knepley const PetscInt **unsplitPoints; /* Non-replicated points for each depth */ 1105b6dfa339SMatthew G. Knepley const PetscInt *ghostPoints; /* Ghost fault faces */ 1106cd0c2139SMatthew G Knepley PetscSection coordSection; 1107cd0c2139SMatthew G Knepley Vec coordinates; 1108cd0c2139SMatthew G Knepley PetscScalar *coords; 1109a6ae58d1SMatthew G. Knepley PetscInt *depthMax; /* The first hybrid point at each depth in the original mesh */ 1110a6ae58d1SMatthew G. Knepley PetscInt *depthEnd; /* The point limit at each depth in the original mesh */ 1111607ab7a9SMatthew G. Knepley PetscInt *depthShift; /* Number of replicated+hybrid points at each depth */ 1112607ab7a9SMatthew G. Knepley PetscInt *pMaxNew; /* The first replicated point at each depth in the new mesh, hybrids come after this */ 1113607ab7a9SMatthew G. Knepley PetscInt *coneNew, *coneONew, *supportNew; 111418c5995bSMatthew G. Knepley PetscInt shift = 100, shift2 = 200, depth = 0, dep, dim, d, sp, maxConeSize, maxSupportSize, maxConeSizeNew, maxSupportSizeNew, numLabels, vStart, vEnd, pEnd, p, v; 1115cd0c2139SMatthew G Knepley 1116cd0c2139SMatthew G Knepley PetscFunctionBegin; 11179566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)dm, &comm)); 11189566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 11199566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepth(dm, &depth)); 11209566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthStratum(dm, 0, &vStart, &vEnd)); 1121412e9a14SMatthew G. Knepley /* We do not want this label automatically computed, instead we compute it here */ 11229566063dSJacob Faibussowitsch PetscCall(DMCreateLabel(sdm, "celltype")); 1123cd0c2139SMatthew G Knepley /* Count split points and add cohesive cells */ 11249566063dSJacob Faibussowitsch PetscCall(DMPlexGetMaxSizes(dm, &maxConeSize, &maxSupportSize)); 11259566063dSJacob Faibussowitsch PetscCall(PetscMalloc5(depth + 1, &depthMax, depth + 1, &depthEnd, 2 * (depth + 1), &depthShift, depth + 1, &pMaxNew, depth + 1, &numHybridPointsOld)); 11269566063dSJacob Faibussowitsch PetscCall(PetscMalloc7(depth + 1, &splitIS, depth + 1, &unsplitIS, depth + 1, &numSplitPoints, depth + 1, &numUnsplitPoints, depth + 1, &numHybridPoints, depth + 1, &splitPoints, depth + 1, &unsplitPoints)); 1127607ab7a9SMatthew G. Knepley for (d = 0; d <= depth; ++d) { 11289566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthStratum(dm, d, NULL, &pMaxNew[d])); 11299566063dSJacob Faibussowitsch PetscCall(DMPlexGetTensorPrismBounds_Internal(dm, d, &depthMax[d], NULL)); 1130a6ae58d1SMatthew G. Knepley depthEnd[d] = pMaxNew[d]; 1131a6ae58d1SMatthew G. Knepley depthMax[d] = depthMax[d] < 0 ? depthEnd[d] : depthMax[d]; 1132607ab7a9SMatthew G. Knepley numSplitPoints[d] = 0; 113318c5995bSMatthew G. Knepley numUnsplitPoints[d] = 0; 1134607ab7a9SMatthew G. Knepley numHybridPoints[d] = 0; 1135a6ae58d1SMatthew G. Knepley numHybridPointsOld[d] = depthMax[d] < 0 ? 0 : depthEnd[d] - depthMax[d]; 1136607ab7a9SMatthew G. Knepley splitPoints[d] = NULL; 113718c5995bSMatthew G. Knepley unsplitPoints[d] = NULL; 113818c5995bSMatthew G. Knepley splitIS[d] = NULL; 113918c5995bSMatthew G. Knepley unsplitIS[d] = NULL; 114059eef20bSToby Isaac /* we are shifting the existing hybrid points with the stratum behind them, so 114159eef20bSToby Isaac * the split comes at the end of the normal points, i.e., at depthMax[d] */ 114259eef20bSToby Isaac depthShift[2 * d] = depthMax[d]; 114359eef20bSToby Isaac depthShift[2 * d + 1] = 0; 1144607ab7a9SMatthew G. Knepley } 1145b6dfa339SMatthew G. Knepley numGhostPoints = 0; 1146b6dfa339SMatthew G. Knepley ghostPoints = NULL; 1147cd0c2139SMatthew G Knepley if (label) { 11489566063dSJacob Faibussowitsch PetscCall(DMLabelGetValueIS(label, &valueIS)); 11499566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(valueIS, &numSP)); 11509566063dSJacob Faibussowitsch PetscCall(ISGetIndices(valueIS, &values)); 1151cd0c2139SMatthew G Knepley } 1152cd0c2139SMatthew G Knepley for (sp = 0; sp < numSP; ++sp) { 1153cd0c2139SMatthew G Knepley const PetscInt dep = values[sp]; 1154cd0c2139SMatthew G Knepley 1155cd0c2139SMatthew G Knepley if ((dep < 0) || (dep > depth)) continue; 11569566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(label, dep, &splitIS[dep])); 115718c5995bSMatthew G. Knepley if (splitIS[dep]) { 11589566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(splitIS[dep], &numSplitPoints[dep])); 11599566063dSJacob Faibussowitsch PetscCall(ISGetIndices(splitIS[dep], &splitPoints[dep])); 116018c5995bSMatthew G. Knepley } 11619566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(label, shift2 + dep, &unsplitIS[dep])); 116218c5995bSMatthew G. Knepley if (unsplitIS[dep]) { 11639566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(unsplitIS[dep], &numUnsplitPoints[dep])); 11649566063dSJacob Faibussowitsch PetscCall(ISGetIndices(unsplitIS[dep], &unsplitPoints[dep])); 1165cd0c2139SMatthew G Knepley } 1166cd0c2139SMatthew G Knepley } 1167b6dfa339SMatthew G. Knepley PetscCall(DMLabelGetStratumIS(label, shift2 + dim - 1, &ghostIS)); 1168b6dfa339SMatthew G. Knepley if (ghostIS) { 1169b6dfa339SMatthew G. Knepley PetscCall(ISGetLocalSize(ghostIS, &numGhostPoints)); 1170b6dfa339SMatthew G. Knepley PetscCall(ISGetIndices(ghostIS, &ghostPoints)); 1171b6dfa339SMatthew G. Knepley } 1172607ab7a9SMatthew G. Knepley /* Calculate number of hybrid points */ 117318c5995bSMatthew G. Knepley for (d = 1; d <= depth; ++d) numHybridPoints[d] = numSplitPoints[d - 1] + numUnsplitPoints[d - 1]; /* There is a hybrid cell/face/edge for every split face/edge/vertex */ 11742582d50cSToby Isaac for (d = 0; d <= depth; ++d) depthShift[2 * d + 1] = numSplitPoints[d] + numHybridPoints[d]; 11759566063dSJacob Faibussowitsch PetscCall(DMPlexShiftPointSetUp_Internal(depth, depthShift)); 117659eef20bSToby Isaac /* the end of the points in this stratum that come before the new points: 117759eef20bSToby Isaac * shifting pMaxNew[d] gets the new start of the next stratum, then count back the old hybrid points and the newly 117859eef20bSToby Isaac * added points */ 11792582d50cSToby Isaac for (d = 0; d <= depth; ++d) pMaxNew[d] = DMPlexShiftPoint_Internal(pMaxNew[d], depth, depthShift) - (numHybridPointsOld[d] + numSplitPoints[d] + numHybridPoints[d]); 11809566063dSJacob Faibussowitsch PetscCall(DMPlexShiftSizes_Internal(dm, depthShift, sdm)); 1181cd0c2139SMatthew G Knepley /* Step 3: Set cone/support sizes for new points */ 1182cd0c2139SMatthew G Knepley for (dep = 0; dep <= depth; ++dep) { 1183cd0c2139SMatthew G Knepley for (p = 0; p < numSplitPoints[dep]; ++p) { 1184cd0c2139SMatthew G Knepley const PetscInt oldp = splitPoints[dep][p]; 11852582d50cSToby Isaac const PetscInt newp = DMPlexShiftPoint_Internal(oldp, depth, depthShift) /*oldp + depthOffset[dep]*/; 11864c367dbcSMatthew G. Knepley const PetscInt splitp = p + pMaxNew[dep]; 1187cd0c2139SMatthew G Knepley const PetscInt *support; 1188394c2f0fSMatthew G. Knepley DMPolytopeType ct; 11894c367dbcSMatthew G. Knepley PetscInt coneSize, supportSize, qf, qn, qp, e; 1190cd0c2139SMatthew G Knepley 11919566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, oldp, &coneSize)); 11929566063dSJacob Faibussowitsch PetscCall(DMPlexSetConeSize(sdm, splitp, coneSize)); 11939566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dm, oldp, &supportSize)); 11949566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupportSize(sdm, splitp, supportSize)); 11959566063dSJacob Faibussowitsch PetscCall(DMPlexGetCellType(dm, oldp, &ct)); 11969566063dSJacob Faibussowitsch PetscCall(DMPlexSetCellType(sdm, splitp, ct)); 1197cd0c2139SMatthew G Knepley if (dep == depth - 1) { 11984c367dbcSMatthew G. Knepley const PetscInt hybcell = p + pMaxNew[dep + 1] + numSplitPoints[dep + 1]; 11994c367dbcSMatthew G. Knepley 1200cd0c2139SMatthew G Knepley /* Add cohesive cells, they are prisms */ 12019566063dSJacob Faibussowitsch PetscCall(DMPlexSetConeSize(sdm, hybcell, 2 + coneSize)); 1202412e9a14SMatthew G. Knepley switch (coneSize) { 12039566063dSJacob Faibussowitsch case 2: PetscCall(DMPlexSetCellType(sdm, hybcell, DM_POLYTOPE_SEG_PRISM_TENSOR)); break; 12049566063dSJacob Faibussowitsch case 3: PetscCall(DMPlexSetCellType(sdm, hybcell, DM_POLYTOPE_TRI_PRISM_TENSOR)); break; 12059566063dSJacob Faibussowitsch case 4: PetscCall(DMPlexSetCellType(sdm, hybcell, DM_POLYTOPE_QUAD_PRISM_TENSOR)); break; 1206412e9a14SMatthew G. Knepley } 1207b6dfa339SMatthew G. Knepley /* Shared fault faces with only one support cell now have two with the cohesive cell */ 1208b6dfa339SMatthew G. Knepley /* TODO Check thaat oldp has rootdegree == 1 */ 1209b6dfa339SMatthew G. Knepley if (supportSize == 1) { 1210b6dfa339SMatthew G. Knepley const PetscInt *support; 1211b6dfa339SMatthew G. Knepley PetscInt val; 1212b6dfa339SMatthew G. Knepley 1213b6dfa339SMatthew G. Knepley PetscCall(DMPlexGetSupport(dm, oldp, &support)); 1214b6dfa339SMatthew G. Knepley PetscCall(DMLabelGetValue(label, support[0], &val)); 1215b6dfa339SMatthew G. Knepley if (val < 0) PetscCall(DMPlexSetSupportSize(sdm, splitp, 2)); 1216b6dfa339SMatthew G. Knepley else PetscCall(DMPlexSetSupportSize(sdm, newp, 2)); 1217b6dfa339SMatthew G. Knepley } 1218cd0c2139SMatthew G Knepley } else if (dep == 0) { 12194c367dbcSMatthew G. Knepley const PetscInt hybedge = p + pMaxNew[dep + 1] + numSplitPoints[dep + 1]; 1220cd0c2139SMatthew G Knepley 12219566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(dm, oldp, &support)); 12224c367dbcSMatthew G. Knepley for (e = 0, qn = 0, qp = 0, qf = 0; e < supportSize; ++e) { 1223cd0c2139SMatthew G Knepley PetscInt val; 1224cd0c2139SMatthew G Knepley 12259566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, support[e], &val)); 12264c367dbcSMatthew G. Knepley if (val == 1) ++qf; 12274c367dbcSMatthew G. Knepley if ((val == 1) || (val == (shift + 1))) ++qn; 12284c367dbcSMatthew G. Knepley if ((val == 1) || (val == -(shift + 1))) ++qp; 1229cd0c2139SMatthew G Knepley } 12304c367dbcSMatthew G. Knepley /* Split old vertex: Edges into original vertex and new cohesive edge */ 12319566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupportSize(sdm, newp, qn + 1)); 12324c367dbcSMatthew G. Knepley /* Split new vertex: Edges into split vertex and new cohesive edge */ 12339566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupportSize(sdm, splitp, qp + 1)); 12344c367dbcSMatthew G. Knepley /* Add hybrid edge */ 12359566063dSJacob Faibussowitsch PetscCall(DMPlexSetConeSize(sdm, hybedge, 2)); 12369566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupportSize(sdm, hybedge, qf)); 12379566063dSJacob Faibussowitsch PetscCall(DMPlexSetCellType(sdm, hybedge, DM_POLYTOPE_POINT_PRISM_TENSOR)); 1238cd0c2139SMatthew G Knepley } else if (dep == dim - 2) { 12394c367dbcSMatthew G. Knepley const PetscInt hybface = p + pMaxNew[dep + 1] + numSplitPoints[dep + 1]; 12404c367dbcSMatthew G. Knepley 12419566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(dm, oldp, &support)); 12424c367dbcSMatthew G. Knepley for (e = 0, qn = 0, qp = 0, qf = 0; e < supportSize; ++e) { 1243cd0c2139SMatthew G Knepley PetscInt val; 1244cd0c2139SMatthew G Knepley 12459566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, support[e], &val)); 12464c367dbcSMatthew G. Knepley if (val == dim - 1) ++qf; 12474c367dbcSMatthew G. Knepley if ((val == dim - 1) || (val == (shift + dim - 1))) ++qn; 12484c367dbcSMatthew G. Knepley if ((val == dim - 1) || (val == -(shift + dim - 1))) ++qp; 1249cd0c2139SMatthew G Knepley } 12504c367dbcSMatthew G. Knepley /* Split old edge: Faces into original edge and cohesive face (positive side?) */ 12519566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupportSize(sdm, newp, qn + 1)); 12524c367dbcSMatthew G. Knepley /* Split new edge: Faces into split edge and cohesive face (negative side?) */ 12539566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupportSize(sdm, splitp, qp + 1)); 12544c367dbcSMatthew G. Knepley /* Add hybrid face */ 12559566063dSJacob Faibussowitsch PetscCall(DMPlexSetConeSize(sdm, hybface, 4)); 12569566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupportSize(sdm, hybface, qf)); 12579566063dSJacob Faibussowitsch PetscCall(DMPlexSetCellType(sdm, hybface, DM_POLYTOPE_SEG_PRISM_TENSOR)); 1258cd0c2139SMatthew G Knepley } 1259cd0c2139SMatthew G Knepley } 1260cd0c2139SMatthew G Knepley } 126118c5995bSMatthew G. Knepley for (dep = 0; dep <= depth; ++dep) { 126218c5995bSMatthew G. Knepley for (p = 0; p < numUnsplitPoints[dep]; ++p) { 126318c5995bSMatthew G. Knepley const PetscInt oldp = unsplitPoints[dep][p]; 12642582d50cSToby Isaac const PetscInt newp = DMPlexShiftPoint_Internal(oldp, depth, depthShift) /*oldp + depthOffset[dep]*/; 126518c5995bSMatthew G. Knepley const PetscInt *support; 1266da1dd7e4SMatthew G. Knepley PetscInt coneSize, supportSize, qf, e, s; 126718c5995bSMatthew G. Knepley 12689566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, oldp, &coneSize)); 12699566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dm, oldp, &supportSize)); 12709566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(dm, oldp, &support)); 127118c5995bSMatthew G. Knepley if (dep == 0) { 127218c5995bSMatthew G. Knepley const PetscInt hybedge = p + pMaxNew[dep + 1] + numSplitPoints[dep + 1] + numSplitPoints[dep]; 127318c5995bSMatthew G. Knepley 127439254ff6SMatthew G. Knepley /* Unsplit vertex: Edges into original vertex, split edges, and new cohesive edge twice */ 127539254ff6SMatthew G. Knepley for (s = 0, qf = 0; s < supportSize; ++s, ++qf) { 12769566063dSJacob Faibussowitsch PetscCall(PetscFindInt(support[s], numSplitPoints[dep + 1], splitPoints[dep + 1], &e)); 127739254ff6SMatthew G. Knepley if (e >= 0) ++qf; 127839254ff6SMatthew G. Knepley } 12799566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupportSize(sdm, newp, qf + 2)); 128018c5995bSMatthew G. Knepley /* Add hybrid edge */ 12819566063dSJacob Faibussowitsch PetscCall(DMPlexSetConeSize(sdm, hybedge, 2)); 1282e1757548SMatthew G. Knepley for (e = 0, qf = 0; e < supportSize; ++e) { 1283e1757548SMatthew G. Knepley PetscInt val; 1284e1757548SMatthew G. Knepley 12859566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, support[e], &val)); 1286e1757548SMatthew G. Knepley /* Split and unsplit edges produce hybrid faces */ 1287da1dd7e4SMatthew G. Knepley if (val == 1) ++qf; 1288da1dd7e4SMatthew G. Knepley if (val == (shift2 + 1)) ++qf; 1289e1757548SMatthew G. Knepley } 12909566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupportSize(sdm, hybedge, qf)); 12919566063dSJacob Faibussowitsch PetscCall(DMPlexSetCellType(sdm, hybedge, DM_POLYTOPE_POINT_PRISM_TENSOR)); 129218c5995bSMatthew G. Knepley } else if (dep == dim - 2) { 129318c5995bSMatthew G. Knepley const PetscInt hybface = p + pMaxNew[dep + 1] + numSplitPoints[dep + 1] + numSplitPoints[dep]; 1294cd0c2139SMatthew G Knepley PetscInt val; 1295cd0c2139SMatthew G Knepley 1296da1dd7e4SMatthew G. Knepley for (e = 0, qf = 0; e < supportSize; ++e) { 12979566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, support[e], &val)); 1298da1dd7e4SMatthew G. Knepley if (val == dim - 1) qf += 2; 1299da1dd7e4SMatthew G. Knepley else ++qf; 1300cd0c2139SMatthew G Knepley } 130118c5995bSMatthew G. Knepley /* Unsplit edge: Faces into original edge, split face, and cohesive face twice */ 13029566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupportSize(sdm, newp, qf + 2)); 130318c5995bSMatthew G. Knepley /* Add hybrid face */ 1304da1dd7e4SMatthew G. Knepley for (e = 0, qf = 0; e < supportSize; ++e) { 13059566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, support[e], &val)); 1306da1dd7e4SMatthew G. Knepley if (val == dim - 1) ++qf; 1307da1dd7e4SMatthew G. Knepley } 13089566063dSJacob Faibussowitsch PetscCall(DMPlexSetConeSize(sdm, hybface, 4)); 13099566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupportSize(sdm, hybface, qf)); 13109566063dSJacob Faibussowitsch PetscCall(DMPlexSetCellType(sdm, hybface, DM_POLYTOPE_SEG_PRISM_TENSOR)); 1311cd0c2139SMatthew G Knepley } 1312cd0c2139SMatthew G Knepley } 1313cd0c2139SMatthew G Knepley } 1314cd0c2139SMatthew G Knepley /* Step 4: Setup split DM */ 13159566063dSJacob Faibussowitsch PetscCall(DMSetUp(sdm)); 13169566063dSJacob Faibussowitsch PetscCall(DMPlexShiftPoints_Internal(dm, depthShift, sdm)); 13179566063dSJacob Faibussowitsch PetscCall(DMPlexGetMaxSizes(sdm, &maxConeSizeNew, &maxSupportSizeNew)); 13189566063dSJacob Faibussowitsch PetscCall(PetscMalloc3(PetscMax(maxConeSize, maxConeSizeNew) * 3, &coneNew, PetscMax(maxConeSize, maxConeSizeNew) * 3, &coneONew, PetscMax(maxSupportSize, maxSupportSizeNew), &supportNew)); 1319cd0c2139SMatthew G Knepley /* Step 6: Set cones and supports for new points */ 1320cd0c2139SMatthew G Knepley for (dep = 0; dep <= depth; ++dep) { 1321cd0c2139SMatthew G Knepley for (p = 0; p < numSplitPoints[dep]; ++p) { 1322cd0c2139SMatthew G Knepley const PetscInt oldp = splitPoints[dep][p]; 13232582d50cSToby Isaac const PetscInt newp = DMPlexShiftPoint_Internal(oldp, depth, depthShift) /*oldp + depthOffset[dep]*/; 13244c367dbcSMatthew G. Knepley const PetscInt splitp = p + pMaxNew[dep]; 1325cd0c2139SMatthew G Knepley const PetscInt *cone, *support, *ornt; 1326b5a892a1SMatthew G. Knepley DMPolytopeType ct; 13274c367dbcSMatthew G. Knepley PetscInt coneSize, supportSize, q, qf, qn, qp, v, e, s; 1328cd0c2139SMatthew G Knepley 13299566063dSJacob Faibussowitsch PetscCall(DMPlexGetCellType(dm, oldp, &ct)); 13309566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, oldp, &coneSize)); 13319566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, oldp, &cone)); 13329566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeOrientation(dm, oldp, &ornt)); 13339566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dm, oldp, &supportSize)); 13349566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(dm, oldp, &support)); 1335cd0c2139SMatthew G Knepley if (dep == depth - 1) { 133696a07cd0SMatthew G. Knepley PetscBool hasUnsplit = PETSC_FALSE; 13374c367dbcSMatthew G. Knepley const PetscInt hybcell = p + pMaxNew[dep + 1] + numSplitPoints[dep + 1]; 1338cd0c2139SMatthew G Knepley const PetscInt *supportF; 1339cd0c2139SMatthew G Knepley 1340b6dfa339SMatthew G. Knepley coneONew[0] = coneONew[1] = -1000; 1341cd0c2139SMatthew G Knepley /* Split face: copy in old face to new face to start */ 13429566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(sdm, newp, &supportF)); 13439566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupport(sdm, splitp, supportF)); 1344cd0c2139SMatthew G Knepley /* Split old face: old vertices/edges in cone so no change */ 1345cd0c2139SMatthew G Knepley /* Split new face: new vertices/edges in cone */ 1346cd0c2139SMatthew G Knepley for (q = 0; q < coneSize; ++q) { 13479566063dSJacob Faibussowitsch PetscCall(PetscFindInt(cone[q], numSplitPoints[dep - 1], splitPoints[dep - 1], &v)); 134818c5995bSMatthew G. Knepley if (v < 0) { 13499566063dSJacob Faibussowitsch PetscCall(PetscFindInt(cone[q], numUnsplitPoints[dep - 1], unsplitPoints[dep - 1], &v)); 135063a3b9bcSJacob Faibussowitsch PetscCheck(v >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Could not locate point %" PetscInt_FMT " in split or unsplit points of depth %" PetscInt_FMT, cone[q], dep - 1); 13512582d50cSToby Isaac coneNew[2 + q] = DMPlexShiftPoint_Internal(cone[q], depth, depthShift) /*cone[q] + depthOffset[dep-1]*/; 135296a07cd0SMatthew G. Knepley hasUnsplit = PETSC_TRUE; 135318c5995bSMatthew G. Knepley } else { 13544c367dbcSMatthew G. Knepley coneNew[2 + q] = v + pMaxNew[dep - 1]; 1355163235baSMatthew G. Knepley if (dep > 1) { 1356163235baSMatthew G. Knepley const PetscInt *econe; 1357163235baSMatthew G. Knepley PetscInt econeSize, r, vs, vu; 1358163235baSMatthew G. Knepley 13599566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, cone[q], &econeSize)); 13609566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, cone[q], &econe)); 1361163235baSMatthew G. Knepley for (r = 0; r < econeSize; ++r) { 13629566063dSJacob Faibussowitsch PetscCall(PetscFindInt(econe[r], numSplitPoints[dep - 2], splitPoints[dep - 2], &vs)); 13639566063dSJacob Faibussowitsch PetscCall(PetscFindInt(econe[r], numUnsplitPoints[dep - 2], unsplitPoints[dep - 2], &vu)); 1364163235baSMatthew G. Knepley if (vs >= 0) continue; 136563a3b9bcSJacob Faibussowitsch PetscCheck(vu >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Could not locate point %" PetscInt_FMT " in split or unsplit points of depth %" PetscInt_FMT, econe[r], dep - 2); 1366163235baSMatthew G. Knepley hasUnsplit = PETSC_TRUE; 1367163235baSMatthew G. Knepley } 1368163235baSMatthew G. Knepley } 1369cd0c2139SMatthew G Knepley } 1370cd0c2139SMatthew G Knepley } 13719566063dSJacob Faibussowitsch PetscCall(DMPlexSetCone(sdm, splitp, &coneNew[2])); 13729566063dSJacob Faibussowitsch PetscCall(DMPlexSetConeOrientation(sdm, splitp, ornt)); 1373e537020bSMatthew G. Knepley /* Face support */ 1374b6dfa339SMatthew G. Knepley PetscInt vals[2]; 1375cd0c2139SMatthew G Knepley 1376b6dfa339SMatthew G. Knepley PetscCall(DMLabelGetValue(label, support[0], &vals[0])); 1377b6dfa339SMatthew G. Knepley if (supportSize > 1) PetscCall(DMLabelGetValue(label, support[1], &vals[1])); 1378b6dfa339SMatthew G. Knepley else vals[1] = -vals[0]; 1379b6dfa339SMatthew G. Knepley PetscCheck(vals[0] * vals[1] < 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid support labels %" PetscInt_FMT " %" PetscInt_FMT, vals[0], vals[1]); 1380b6dfa339SMatthew G. Knepley 1381b6dfa339SMatthew G. Knepley for (s = 0; s < 2; ++s) { 1382b6dfa339SMatthew G. Knepley if (s >= supportSize) { 1383b6dfa339SMatthew G. Knepley if (vals[s] < 0) { 1384b6dfa339SMatthew G. Knepley /* Ghost old face: Replace negative side cell with cohesive cell */ 1385accc9626SMatthew G. Knepley PetscCall(DMPlexInsertSupport(sdm, newp, s, hybcell)); 1386b6dfa339SMatthew G. Knepley } else { 1387b6dfa339SMatthew G. Knepley /* Ghost new face: Replace positive side cell with cohesive cell */ 1388accc9626SMatthew G. Knepley PetscCall(DMPlexInsertSupport(sdm, splitp, s, hybcell)); 1389b6dfa339SMatthew G. Knepley } 1390b6dfa339SMatthew G. Knepley } else { 1391b6dfa339SMatthew G. Knepley if (vals[s] < 0) { 1392cd0c2139SMatthew G Knepley /* Split old face: Replace negative side cell with cohesive cell */ 13939566063dSJacob Faibussowitsch PetscCall(DMPlexInsertSupport(sdm, newp, s, hybcell)); 1394cd0c2139SMatthew G Knepley } else { 1395cd0c2139SMatthew G Knepley /* Split new face: Replace positive side cell with cohesive cell */ 13969566063dSJacob Faibussowitsch PetscCall(DMPlexInsertSupport(sdm, splitp, s, hybcell)); 1397b6dfa339SMatthew G. Knepley } 1398b6dfa339SMatthew G. Knepley } 1399b6dfa339SMatthew G. Knepley } 1400b6dfa339SMatthew G. Knepley /* Get orientation for cohesive face using the positive side cell */ 1401e537020bSMatthew G. Knepley { 1402e537020bSMatthew G. Knepley const PetscInt *ncone, *nconeO; 1403b6dfa339SMatthew G. Knepley PetscInt nconeSize, nc, ocell; 1404accc9626SMatthew G. Knepley PetscBool flip = PETSC_FALSE; 1405e537020bSMatthew G. Knepley 14069371c9d4SSatish Balay if (supportSize > 1) { 14079371c9d4SSatish Balay ocell = vals[0] < 0 ? support[1] : support[0]; 14089371c9d4SSatish Balay } else { 14099371c9d4SSatish Balay ocell = support[0]; 14109371c9d4SSatish Balay flip = vals[0] < 0 ? PETSC_TRUE : PETSC_FALSE; 14119371c9d4SSatish Balay } 1412b6dfa339SMatthew G. Knepley PetscCall(DMPlexGetConeSize(dm, ocell, &nconeSize)); 1413b6dfa339SMatthew G. Knepley PetscCall(DMPlexGetCone(dm, ocell, &ncone)); 1414e1a13daeSMatthew G. Knepley PetscCall(DMPlexGetConeOrientation(dm, ocell, &nconeO)); 1415e537020bSMatthew G. Knepley for (nc = 0; nc < nconeSize; ++nc) { 1416e537020bSMatthew G. Knepley if (ncone[nc] == oldp) { 1417b6dfa339SMatthew G. Knepley coneONew[0] = flip ? -(nconeO[nc] + 1) : nconeO[nc]; 1418e537020bSMatthew G. Knepley break; 1419cd0c2139SMatthew G Knepley } 1420cd0c2139SMatthew G Knepley } 1421b6dfa339SMatthew G. Knepley PetscCheck(nc < nconeSize, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Could not locate face %" PetscInt_FMT " in neighboring cell %" PetscInt_FMT, oldp, ocell); 1422e537020bSMatthew G. Knepley } 14234c367dbcSMatthew G. Knepley /* Cohesive cell: Old and new split face, then new cohesive faces */ 1424b6dfa339SMatthew G. Knepley { 1425b6dfa339SMatthew G. Knepley const PetscInt No = DMPolytopeTypeGetNumArrangments(ct) / 2; 1426b6dfa339SMatthew G. Knepley PetscCheck((coneONew[0] >= -No) && (coneONew[0] < No), PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid %s orientation %" PetscInt_FMT, DMPolytopeTypes[ct], coneONew[0]); 1427b6dfa339SMatthew G. Knepley } 1428b5a892a1SMatthew G. Knepley const PetscInt *arr = DMPolytopeTypeGetArrangment(ct, coneONew[0]); 1429b5a892a1SMatthew G. Knepley 1430fd4b9f15SMatthew G. Knepley coneNew[0] = newp; /* Extracted negative side orientation above */ 14314c367dbcSMatthew G. Knepley coneNew[1] = splitp; 14324c367dbcSMatthew G. Knepley coneONew[1] = coneONew[0]; 1433e537020bSMatthew G. Knepley for (q = 0; q < coneSize; ++q) { 1434412e9a14SMatthew G. Knepley /* Hybrid faces must follow order from oriented end face */ 1435b5a892a1SMatthew G. Knepley const PetscInt qa = arr[q * 2 + 0]; 1436b5a892a1SMatthew G. Knepley const PetscInt qo = arr[q * 2 + 1]; 1437b5a892a1SMatthew G. Knepley DMPolytopeType ft = dep == 2 ? DM_POLYTOPE_SEGMENT : DM_POLYTOPE_POINT; 1438412e9a14SMatthew G. Knepley 14399566063dSJacob Faibussowitsch PetscCall(PetscFindInt(cone[qa], numSplitPoints[dep - 1], splitPoints[dep - 1], &v)); 144018c5995bSMatthew G. Knepley if (v < 0) { 14419566063dSJacob Faibussowitsch PetscCall(PetscFindInt(cone[qa], numUnsplitPoints[dep - 1], unsplitPoints[dep - 1], &v)); 144218c5995bSMatthew G. Knepley coneNew[2 + q] = v + pMaxNew[dep] + numSplitPoints[dep] + numSplitPoints[dep - 1]; 144318c5995bSMatthew G. Knepley } else { 144418c5995bSMatthew G. Knepley coneNew[2 + q] = v + pMaxNew[dep] + numSplitPoints[dep]; 144518c5995bSMatthew G. Knepley } 1446b5a892a1SMatthew G. Knepley coneONew[2 + q] = DMPolytopeTypeComposeOrientation(ft, qo, ornt[qa]); 1447e537020bSMatthew G. Knepley } 14489566063dSJacob Faibussowitsch PetscCall(DMPlexSetCone(sdm, hybcell, coneNew)); 14499566063dSJacob Faibussowitsch PetscCall(DMPlexSetConeOrientation(sdm, hybcell, coneONew)); 145096a07cd0SMatthew G. Knepley /* Label the hybrid cells on the boundary of the split */ 14519566063dSJacob Faibussowitsch if (hasUnsplit) PetscCall(DMLabelSetValue(label, -hybcell, dim)); 1452cd0c2139SMatthew G Knepley } else if (dep == 0) { 14534c367dbcSMatthew G. Knepley const PetscInt hybedge = p + pMaxNew[dep + 1] + numSplitPoints[dep + 1]; 1454cd0c2139SMatthew G Knepley 1455cd0c2139SMatthew G Knepley /* Split old vertex: Edges in old split faces and new cohesive edge */ 14564c367dbcSMatthew G. Knepley for (e = 0, qn = 0; e < supportSize; ++e) { 1457cd0c2139SMatthew G Knepley PetscInt val; 1458cd0c2139SMatthew G Knepley 14599566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, support[e], &val)); 1460ad540459SPierre Jolivet if ((val == 1) || (val == (shift + 1))) supportNew[qn++] = DMPlexShiftPoint_Internal(support[e], depth, depthShift) /*support[e] + depthOffset[dep+1]*/; 1461cd0c2139SMatthew G Knepley } 14624c367dbcSMatthew G. Knepley supportNew[qn] = hybedge; 14639566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupport(sdm, newp, supportNew)); 1464cd0c2139SMatthew G Knepley /* Split new vertex: Edges in new split faces and new cohesive edge */ 14654c367dbcSMatthew G. Knepley for (e = 0, qp = 0; e < supportSize; ++e) { 1466cd0c2139SMatthew G Knepley PetscInt val, edge; 1467cd0c2139SMatthew G Knepley 14689566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, support[e], &val)); 1469cd0c2139SMatthew G Knepley if (val == 1) { 14709566063dSJacob Faibussowitsch PetscCall(PetscFindInt(support[e], numSplitPoints[dep + 1], splitPoints[dep + 1], &edge)); 147163a3b9bcSJacob Faibussowitsch PetscCheck(edge >= 0, comm, PETSC_ERR_ARG_WRONG, "Edge %" PetscInt_FMT " is not a split edge", support[e]); 14724c367dbcSMatthew G. Knepley supportNew[qp++] = edge + pMaxNew[dep + 1]; 1473cd0c2139SMatthew G Knepley } else if (val == -(shift + 1)) { 14742582d50cSToby Isaac supportNew[qp++] = DMPlexShiftPoint_Internal(support[e], depth, depthShift) /*support[e] + depthOffset[dep+1]*/; 1475cd0c2139SMatthew G Knepley } 1476cd0c2139SMatthew G Knepley } 14774c367dbcSMatthew G. Knepley supportNew[qp] = hybedge; 14789566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupport(sdm, splitp, supportNew)); 14794c367dbcSMatthew G. Knepley /* Hybrid edge: Old and new split vertex */ 1480cd0c2139SMatthew G Knepley coneNew[0] = newp; 1481cd0c2139SMatthew G Knepley coneNew[1] = splitp; 14829566063dSJacob Faibussowitsch PetscCall(DMPlexSetCone(sdm, hybedge, coneNew)); 14834c367dbcSMatthew G. Knepley for (e = 0, qf = 0; e < supportSize; ++e) { 14844c367dbcSMatthew G. Knepley PetscInt val, edge; 14854c367dbcSMatthew G. Knepley 14869566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, support[e], &val)); 14874c367dbcSMatthew G. Knepley if (val == 1) { 14889566063dSJacob Faibussowitsch PetscCall(PetscFindInt(support[e], numSplitPoints[dep + 1], splitPoints[dep + 1], &edge)); 148963a3b9bcSJacob Faibussowitsch PetscCheck(edge >= 0, comm, PETSC_ERR_ARG_WRONG, "Edge %" PetscInt_FMT " is not a split edge", support[e]); 14904c367dbcSMatthew G. Knepley supportNew[qf++] = edge + pMaxNew[dep + 2] + numSplitPoints[dep + 2]; 14914c367dbcSMatthew G. Knepley } 14924c367dbcSMatthew G. Knepley } 14939566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupport(sdm, hybedge, supportNew)); 1494cd0c2139SMatthew G Knepley } else if (dep == dim - 2) { 14954c367dbcSMatthew G. Knepley const PetscInt hybface = p + pMaxNew[dep + 1] + numSplitPoints[dep + 1]; 14964c367dbcSMatthew G. Knepley 1497cd0c2139SMatthew G Knepley /* Split old edge: old vertices in cone so no change */ 1498cd0c2139SMatthew G Knepley /* Split new edge: new vertices in cone */ 1499cd0c2139SMatthew G Knepley for (q = 0; q < coneSize; ++q) { 15009566063dSJacob Faibussowitsch PetscCall(PetscFindInt(cone[q], numSplitPoints[dep - 1], splitPoints[dep - 1], &v)); 1501e1757548SMatthew G. Knepley if (v < 0) { 15029566063dSJacob Faibussowitsch PetscCall(PetscFindInt(cone[q], numUnsplitPoints[dep - 1], unsplitPoints[dep - 1], &v)); 150363a3b9bcSJacob Faibussowitsch PetscCheck(v >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Could not locate point %" PetscInt_FMT " in split or unsplit points of depth %" PetscInt_FMT, cone[q], dep - 1); 15042582d50cSToby Isaac coneNew[q] = DMPlexShiftPoint_Internal(cone[q], depth, depthShift) /*cone[q] + depthOffset[dep-1]*/; 1505e1757548SMatthew G. Knepley } else { 15064c367dbcSMatthew G. Knepley coneNew[q] = v + pMaxNew[dep - 1]; 1507cd0c2139SMatthew G Knepley } 1508e1757548SMatthew G. Knepley } 15099566063dSJacob Faibussowitsch PetscCall(DMPlexSetCone(sdm, splitp, coneNew)); 1510cd0c2139SMatthew G Knepley /* Split old edge: Faces in positive side cells and old split faces */ 1511cd0c2139SMatthew G Knepley for (e = 0, q = 0; e < supportSize; ++e) { 1512cd0c2139SMatthew G Knepley PetscInt val; 1513cd0c2139SMatthew G Knepley 15149566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, support[e], &val)); 15154c367dbcSMatthew G. Knepley if (val == dim - 1) { 15162582d50cSToby Isaac supportNew[q++] = DMPlexShiftPoint_Internal(support[e], depth, depthShift) /*support[e] + depthOffset[dep+1]*/; 15174c367dbcSMatthew G. Knepley } else if (val == (shift + dim - 1)) { 15182582d50cSToby Isaac supportNew[q++] = DMPlexShiftPoint_Internal(support[e], depth, depthShift) /*support[e] + depthOffset[dep+1]*/; 1519cd0c2139SMatthew G Knepley } 1520cd0c2139SMatthew G Knepley } 1521b279cd2aSMatthew G. Knepley supportNew[q++] = p + pMaxNew[dep + 1] + numSplitPoints[dep + 1]; 15229566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupport(sdm, newp, supportNew)); 1523cd0c2139SMatthew G Knepley /* Split new edge: Faces in negative side cells and new split faces */ 1524cd0c2139SMatthew G Knepley for (e = 0, q = 0; e < supportSize; ++e) { 1525cd0c2139SMatthew G Knepley PetscInt val, face; 1526cd0c2139SMatthew G Knepley 15279566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, support[e], &val)); 1528cd0c2139SMatthew G Knepley if (val == dim - 1) { 15299566063dSJacob Faibussowitsch PetscCall(PetscFindInt(support[e], numSplitPoints[dep + 1], splitPoints[dep + 1], &face)); 153063a3b9bcSJacob Faibussowitsch PetscCheck(face >= 0, comm, PETSC_ERR_ARG_WRONG, "Face %" PetscInt_FMT " is not a split face", support[e]); 15314c367dbcSMatthew G. Knepley supportNew[q++] = face + pMaxNew[dep + 1]; 1532cd0c2139SMatthew G Knepley } else if (val == -(shift + dim - 1)) { 15332582d50cSToby Isaac supportNew[q++] = DMPlexShiftPoint_Internal(support[e], depth, depthShift) /*support[e] + depthOffset[dep+1]*/; 1534cd0c2139SMatthew G Knepley } 1535cd0c2139SMatthew G Knepley } 1536b279cd2aSMatthew G. Knepley supportNew[q++] = p + pMaxNew[dep + 1] + numSplitPoints[dep + 1]; 15379566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupport(sdm, splitp, supportNew)); 15384c367dbcSMatthew G. Knepley /* Hybrid face */ 15394c367dbcSMatthew G. Knepley coneNew[0] = newp; 15404c367dbcSMatthew G. Knepley coneNew[1] = splitp; 15414c367dbcSMatthew G. Knepley for (v = 0; v < coneSize; ++v) { 15424c367dbcSMatthew G. Knepley PetscInt vertex; 15439566063dSJacob Faibussowitsch PetscCall(PetscFindInt(cone[v], numSplitPoints[dep - 1], splitPoints[dep - 1], &vertex)); 1544e1757548SMatthew G. Knepley if (vertex < 0) { 15459566063dSJacob Faibussowitsch PetscCall(PetscFindInt(cone[v], numUnsplitPoints[dep - 1], unsplitPoints[dep - 1], &vertex)); 154663a3b9bcSJacob Faibussowitsch PetscCheck(vertex >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Could not locate point %" PetscInt_FMT " in split or unsplit points of depth %" PetscInt_FMT, cone[v], dep - 1); 1547e1757548SMatthew G. Knepley coneNew[2 + v] = vertex + pMaxNew[dep] + numSplitPoints[dep] + numSplitPoints[dep - 1]; 1548e1757548SMatthew G. Knepley } else { 15494c367dbcSMatthew G. Knepley coneNew[2 + v] = vertex + pMaxNew[dep] + numSplitPoints[dep]; 15504c367dbcSMatthew G. Knepley } 1551e1757548SMatthew G. Knepley } 15529566063dSJacob Faibussowitsch PetscCall(DMPlexSetCone(sdm, hybface, coneNew)); 15534c367dbcSMatthew G. Knepley for (e = 0, qf = 0; e < supportSize; ++e) { 15544c367dbcSMatthew G. Knepley PetscInt val, face; 15554c367dbcSMatthew G. Knepley 15569566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, support[e], &val)); 15574c367dbcSMatthew G. Knepley if (val == dim - 1) { 15589566063dSJacob Faibussowitsch PetscCall(PetscFindInt(support[e], numSplitPoints[dep + 1], splitPoints[dep + 1], &face)); 155963a3b9bcSJacob Faibussowitsch PetscCheck(face >= 0, comm, PETSC_ERR_ARG_WRONG, "Face %" PetscInt_FMT " is not a split face", support[e]); 15604c367dbcSMatthew G. Knepley supportNew[qf++] = face + pMaxNew[dep + 2] + numSplitPoints[dep + 2]; 15614c367dbcSMatthew G. Knepley } 15624c367dbcSMatthew G. Knepley } 15639566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupport(sdm, hybface, supportNew)); 1564cd0c2139SMatthew G Knepley } 1565cd0c2139SMatthew G Knepley } 1566cd0c2139SMatthew G Knepley } 156718c5995bSMatthew G. Knepley for (dep = 0; dep <= depth; ++dep) { 156818c5995bSMatthew G. Knepley for (p = 0; p < numUnsplitPoints[dep]; ++p) { 156918c5995bSMatthew G. Knepley const PetscInt oldp = unsplitPoints[dep][p]; 15702582d50cSToby Isaac const PetscInt newp = DMPlexShiftPoint_Internal(oldp, depth, depthShift) /*oldp + depthOffset[dep]*/; 1571b5a892a1SMatthew G. Knepley const PetscInt *cone, *support; 1572e1757548SMatthew G. Knepley PetscInt coneSize, supportSize, supportSizeNew, q, qf, e, f, s; 157318c5995bSMatthew G. Knepley 15749566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, oldp, &coneSize)); 15759566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, oldp, &cone)); 15769566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dm, oldp, &supportSize)); 15779566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(dm, oldp, &support)); 157818c5995bSMatthew G. Knepley if (dep == 0) { 157918c5995bSMatthew G. Knepley const PetscInt hybedge = p + pMaxNew[dep + 1] + numSplitPoints[dep + 1] + numSplitPoints[dep]; 158018c5995bSMatthew G. Knepley 158118c5995bSMatthew G. Knepley /* Unsplit vertex */ 15829566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(sdm, newp, &supportSizeNew)); 158318c5995bSMatthew G. Knepley for (s = 0, q = 0; s < supportSize; ++s) { 15842582d50cSToby Isaac supportNew[q++] = DMPlexShiftPoint_Internal(support[s], depth, depthShift) /*support[s] + depthOffset[dep+1]*/; 15859566063dSJacob Faibussowitsch PetscCall(PetscFindInt(support[s], numSplitPoints[dep + 1], splitPoints[dep + 1], &e)); 1586ad540459SPierre Jolivet if (e >= 0) supportNew[q++] = e + pMaxNew[dep + 1]; 158718c5995bSMatthew G. Knepley } 158818c5995bSMatthew G. Knepley supportNew[q++] = hybedge; 158918c5995bSMatthew G. Knepley supportNew[q++] = hybedge; 159063a3b9bcSJacob Faibussowitsch PetscCheck(q == supportSizeNew, comm, PETSC_ERR_ARG_WRONG, "Support size %" PetscInt_FMT " != %" PetscInt_FMT " for vertex %" PetscInt_FMT, q, supportSizeNew, newp); 15919566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupport(sdm, newp, supportNew)); 159218c5995bSMatthew G. Knepley /* Hybrid edge */ 159318c5995bSMatthew G. Knepley coneNew[0] = newp; 159418c5995bSMatthew G. Knepley coneNew[1] = newp; 15959566063dSJacob Faibussowitsch PetscCall(DMPlexSetCone(sdm, hybedge, coneNew)); 159618c5995bSMatthew G. Knepley for (e = 0, qf = 0; e < supportSize; ++e) { 159718c5995bSMatthew G. Knepley PetscInt val, edge; 159818c5995bSMatthew G. Knepley 15999566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, support[e], &val)); 160018c5995bSMatthew G. Knepley if (val == 1) { 16019566063dSJacob Faibussowitsch PetscCall(PetscFindInt(support[e], numSplitPoints[dep + 1], splitPoints[dep + 1], &edge)); 160263a3b9bcSJacob Faibussowitsch PetscCheck(edge >= 0, comm, PETSC_ERR_ARG_WRONG, "Edge %" PetscInt_FMT " is not a split edge", support[e]); 160318c5995bSMatthew G. Knepley supportNew[qf++] = edge + pMaxNew[dep + 2] + numSplitPoints[dep + 2]; 1604e1757548SMatthew G. Knepley } else if (val == (shift2 + 1)) { 16059566063dSJacob Faibussowitsch PetscCall(PetscFindInt(support[e], numUnsplitPoints[dep + 1], unsplitPoints[dep + 1], &edge)); 160663a3b9bcSJacob Faibussowitsch PetscCheck(edge >= 0, comm, PETSC_ERR_ARG_WRONG, "Edge %" PetscInt_FMT " is not a unsplit edge", support[e]); 1607e1757548SMatthew G. Knepley supportNew[qf++] = edge + pMaxNew[dep + 2] + numSplitPoints[dep + 2] + numSplitPoints[dep + 1]; 160818c5995bSMatthew G. Knepley } 160918c5995bSMatthew G. Knepley } 16109566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupport(sdm, hybedge, supportNew)); 1611e1757548SMatthew G. Knepley } else if (dep == dim - 2) { 1612e1757548SMatthew G. Knepley const PetscInt hybface = p + pMaxNew[dep + 1] + numSplitPoints[dep + 1] + numSplitPoints[dep]; 1613e1757548SMatthew G. Knepley 1614da1dd7e4SMatthew G. Knepley /* Unsplit edge: Faces into original edge, split face, and hybrid face twice */ 1615e1757548SMatthew G. Knepley for (f = 0, qf = 0; f < supportSize; ++f) { 1616e1757548SMatthew G. Knepley PetscInt val, face; 1617e1757548SMatthew G. Knepley 16189566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, support[f], &val)); 1619e1757548SMatthew G. Knepley if (val == dim - 1) { 16209566063dSJacob Faibussowitsch PetscCall(PetscFindInt(support[f], numSplitPoints[dep + 1], splitPoints[dep + 1], &face)); 162163a3b9bcSJacob Faibussowitsch PetscCheck(face >= 0, comm, PETSC_ERR_ARG_WRONG, "Face %" PetscInt_FMT " is not a split face", support[f]); 16222582d50cSToby Isaac supportNew[qf++] = DMPlexShiftPoint_Internal(support[f], depth, depthShift) /*support[f] + depthOffset[dep+1]*/; 1623e1757548SMatthew G. Knepley supportNew[qf++] = face + pMaxNew[dep + 1]; 1624e1757548SMatthew G. Knepley } else { 16252582d50cSToby Isaac supportNew[qf++] = DMPlexShiftPoint_Internal(support[f], depth, depthShift) /*support[f] + depthOffset[dep+1]*/; 1626e1757548SMatthew G. Knepley } 1627e1757548SMatthew G. Knepley } 1628e1757548SMatthew G. Knepley supportNew[qf++] = hybface; 1629e1757548SMatthew G. Knepley supportNew[qf++] = hybface; 16309566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(sdm, newp, &supportSizeNew)); 163163a3b9bcSJacob Faibussowitsch PetscCheck(qf == supportSizeNew, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Support size for unsplit edge %" PetscInt_FMT " is %" PetscInt_FMT " != %" PetscInt_FMT, newp, qf, supportSizeNew); 16329566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupport(sdm, newp, supportNew)); 1633e1757548SMatthew G. Knepley /* Add hybrid face */ 1634e1757548SMatthew G. Knepley coneNew[0] = newp; 1635212cc919SMatthew G. Knepley coneNew[1] = newp; 16369566063dSJacob Faibussowitsch PetscCall(PetscFindInt(cone[0], numUnsplitPoints[dep - 1], unsplitPoints[dep - 1], &v)); 163763a3b9bcSJacob Faibussowitsch PetscCheck(v >= 0, comm, PETSC_ERR_ARG_WRONG, "Vertex %" PetscInt_FMT " is not an unsplit vertex", cone[0]); 1638212cc919SMatthew G. Knepley coneNew[2] = v + pMaxNew[dep] + numSplitPoints[dep] + numSplitPoints[dep - 1]; 16399566063dSJacob Faibussowitsch PetscCall(PetscFindInt(cone[1], numUnsplitPoints[dep - 1], unsplitPoints[dep - 1], &v)); 164063a3b9bcSJacob Faibussowitsch PetscCheck(v >= 0, comm, PETSC_ERR_ARG_WRONG, "Vertex %" PetscInt_FMT " is not an unsplit vertex", cone[1]); 1641e1757548SMatthew G. Knepley coneNew[3] = v + pMaxNew[dep] + numSplitPoints[dep] + numSplitPoints[dep - 1]; 16429566063dSJacob Faibussowitsch PetscCall(DMPlexSetCone(sdm, hybface, coneNew)); 1643da1dd7e4SMatthew G. Knepley for (f = 0, qf = 0; f < supportSize; ++f) { 1644da1dd7e4SMatthew G. Knepley PetscInt val, face; 1645da1dd7e4SMatthew G. Knepley 16469566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, support[f], &val)); 1647da1dd7e4SMatthew G. Knepley if (val == dim - 1) { 16489566063dSJacob Faibussowitsch PetscCall(PetscFindInt(support[f], numSplitPoints[dep + 1], splitPoints[dep + 1], &face)); 1649da1dd7e4SMatthew G. Knepley supportNew[qf++] = face + pMaxNew[dep + 2] + numSplitPoints[dep + 2]; 1650da1dd7e4SMatthew G. Knepley } 1651da1dd7e4SMatthew G. Knepley } 16529566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(sdm, hybface, &supportSizeNew)); 165363a3b9bcSJacob Faibussowitsch PetscCheck(qf == supportSizeNew, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Support size for hybrid face %" PetscInt_FMT " is %" PetscInt_FMT " != %" PetscInt_FMT, hybface, qf, supportSizeNew); 16549566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupport(sdm, hybface, supportNew)); 1655cd0c2139SMatthew G Knepley } 1656cd0c2139SMatthew G Knepley } 1657cd0c2139SMatthew G Knepley } 1658cd0c2139SMatthew G Knepley /* Step 6b: Replace split points in negative side cones */ 1659cd0c2139SMatthew G Knepley for (sp = 0; sp < numSP; ++sp) { 1660cd0c2139SMatthew G Knepley PetscInt dep = values[sp]; 1661cd0c2139SMatthew G Knepley IS pIS; 1662cd0c2139SMatthew G Knepley PetscInt numPoints; 1663cd0c2139SMatthew G Knepley const PetscInt *points; 1664cd0c2139SMatthew G Knepley 1665cd0c2139SMatthew G Knepley if (dep >= 0) continue; 16669566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(label, dep, &pIS)); 1667cd0c2139SMatthew G Knepley if (!pIS) continue; 1668cd0c2139SMatthew G Knepley dep = -dep - shift; 16699566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(pIS, &numPoints)); 16709566063dSJacob Faibussowitsch PetscCall(ISGetIndices(pIS, &points)); 1671cd0c2139SMatthew G Knepley for (p = 0; p < numPoints; ++p) { 1672cd0c2139SMatthew G Knepley const PetscInt oldp = points[p]; 16732582d50cSToby Isaac const PetscInt newp = DMPlexShiftPoint_Internal(oldp, depth, depthShift) /*depthOffset[dep] + oldp*/; 1674cd0c2139SMatthew G Knepley const PetscInt *cone; 1675cd0c2139SMatthew G Knepley PetscInt coneSize, c; 167650cf782dSMatthew G. Knepley /* PetscBool replaced = PETSC_FALSE; */ 1677cd0c2139SMatthew G Knepley 1678cd0c2139SMatthew G Knepley /* Negative edge: replace split vertex */ 1679cd0c2139SMatthew G Knepley /* Negative cell: replace split face */ 16809566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(sdm, newp, &coneSize)); 16819566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(sdm, newp, &cone)); 1682cd0c2139SMatthew G Knepley for (c = 0; c < coneSize; ++c) { 1683e38fbfedSToby Isaac const PetscInt coldp = DMPlexShiftPointInverse_Internal(cone[c], depth, depthShift); 1684cd0c2139SMatthew G Knepley PetscInt csplitp, cp, val; 1685cd0c2139SMatthew G Knepley 16869566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, coldp, &val)); 1687cd0c2139SMatthew G Knepley if (val == dep - 1) { 16889566063dSJacob Faibussowitsch PetscCall(PetscFindInt(coldp, numSplitPoints[dep - 1], splitPoints[dep - 1], &cp)); 168963a3b9bcSJacob Faibussowitsch PetscCheck(cp >= 0, comm, PETSC_ERR_ARG_WRONG, "Point %" PetscInt_FMT " is not a split point of dimension %" PetscInt_FMT, oldp, dep - 1); 1690cd0c2139SMatthew G Knepley csplitp = pMaxNew[dep - 1] + cp; 16919566063dSJacob Faibussowitsch PetscCall(DMPlexInsertCone(sdm, newp, c, csplitp)); 169250cf782dSMatthew G. Knepley /* replaced = PETSC_TRUE; */ 1693cd0c2139SMatthew G Knepley } 1694cd0c2139SMatthew G Knepley } 16954a189a86SMatthew G. Knepley /* Cells with only a vertex or edge on the submesh have no replacement */ 169628b400f6SJacob Faibussowitsch /* PetscCheck(replaced,comm, PETSC_ERR_ARG_WRONG, "The cone of point %d does not contain split points", oldp); */ 1697cd0c2139SMatthew G Knepley } 16989566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(pIS, &points)); 16999566063dSJacob Faibussowitsch PetscCall(ISDestroy(&pIS)); 1700cd0c2139SMatthew G Knepley } 1701fa8e8ae5SToby Isaac /* Step 7: Coordinates */ 17029566063dSJacob Faibussowitsch PetscCall(DMPlexShiftCoordinates_Internal(dm, depthShift, sdm)); 17039566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateSection(sdm, &coordSection)); 17049566063dSJacob Faibussowitsch PetscCall(DMGetCoordinatesLocal(sdm, &coordinates)); 17059566063dSJacob Faibussowitsch PetscCall(VecGetArray(coordinates, &coords)); 1706cd0c2139SMatthew G Knepley for (v = 0; v < (numSplitPoints ? numSplitPoints[0] : 0); ++v) { 17072582d50cSToby Isaac const PetscInt newp = DMPlexShiftPoint_Internal(splitPoints[0][v], depth, depthShift) /*depthOffset[0] + splitPoints[0][v]*/; 1708cd0c2139SMatthew G Knepley const PetscInt splitp = pMaxNew[0] + v; 1709cd0c2139SMatthew G Knepley PetscInt dof, off, soff, d; 1710cd0c2139SMatthew G Knepley 17119566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(coordSection, newp, &dof)); 17129566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(coordSection, newp, &off)); 17139566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(coordSection, splitp, &soff)); 1714cd0c2139SMatthew G Knepley for (d = 0; d < dof; ++d) coords[soff + d] = coords[off + d]; 1715cd0c2139SMatthew G Knepley } 17169566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(coordinates, &coords)); 1717fa8e8ae5SToby Isaac /* Step 8: SF, if I can figure this out we can split the mesh in parallel */ 17189566063dSJacob Faibussowitsch PetscCall(DMPlexShiftSF_Internal(dm, depthShift, sdm)); 1719b6dfa339SMatthew G. Knepley /* TODO We need to associate the ghost points with the correct replica */ 1720fa8e8ae5SToby Isaac /* Step 9: Labels */ 17219566063dSJacob Faibussowitsch PetscCall(DMPlexShiftLabels_Internal(dm, depthShift, sdm)); 17229566063dSJacob Faibussowitsch PetscCall(DMPlexCreateVTKLabel_Internal(dm, PETSC_FALSE, sdm)); 17239566063dSJacob Faibussowitsch PetscCall(DMGetNumLabels(sdm, &numLabels)); 1724cd0c2139SMatthew G Knepley for (dep = 0; dep <= depth; ++dep) { 1725cd0c2139SMatthew G Knepley for (p = 0; p < numSplitPoints[dep]; ++p) { 17262582d50cSToby Isaac const PetscInt newp = DMPlexShiftPoint_Internal(splitPoints[dep][p], depth, depthShift) /*depthOffset[dep] + splitPoints[dep][p]*/; 1727cd0c2139SMatthew G Knepley const PetscInt splitp = pMaxNew[dep] + p; 1728cd0c2139SMatthew G Knepley PetscInt l; 1729cd0c2139SMatthew G Knepley 17307db7e0a7SMatthew G. Knepley if (splitLabel) { 17317db7e0a7SMatthew G. Knepley const PetscInt val = 100 + dep; 17327db7e0a7SMatthew G. Knepley 17339566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(splitLabel, newp, val)); 17349566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(splitLabel, splitp, -val)); 17357db7e0a7SMatthew G. Knepley } 1736cd0c2139SMatthew G Knepley for (l = 0; l < numLabels; ++l) { 1737cd0c2139SMatthew G Knepley DMLabel mlabel; 1738cd0c2139SMatthew G Knepley const char *lname; 1739cd0c2139SMatthew G Knepley PetscInt val; 17409a356370SMatthew G. Knepley PetscBool isDepth; 1741cd0c2139SMatthew G Knepley 17429566063dSJacob Faibussowitsch PetscCall(DMGetLabelName(sdm, l, &lname)); 17439566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(lname, "depth", &isDepth)); 17449a356370SMatthew G. Knepley if (isDepth) continue; 17459566063dSJacob Faibussowitsch PetscCall(DMGetLabel(sdm, lname, &mlabel)); 17469566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(mlabel, newp, &val)); 174748a46eb9SPierre Jolivet if (val >= 0) PetscCall(DMLabelSetValue(mlabel, splitp, val)); 1748cd0c2139SMatthew G Knepley } 1749cd0c2139SMatthew G Knepley } 1750cd0c2139SMatthew G Knepley } 1751cd0c2139SMatthew G Knepley for (sp = 0; sp < numSP; ++sp) { 1752cd0c2139SMatthew G Knepley const PetscInt dep = values[sp]; 1753cd0c2139SMatthew G Knepley 1754cd0c2139SMatthew G Knepley if ((dep < 0) || (dep > depth)) continue; 17559566063dSJacob Faibussowitsch if (splitIS[dep]) PetscCall(ISRestoreIndices(splitIS[dep], &splitPoints[dep])); 17569566063dSJacob Faibussowitsch PetscCall(ISDestroy(&splitIS[dep])); 17579566063dSJacob Faibussowitsch if (unsplitIS[dep]) PetscCall(ISRestoreIndices(unsplitIS[dep], &unsplitPoints[dep])); 17589566063dSJacob Faibussowitsch PetscCall(ISDestroy(&unsplitIS[dep])); 1759cd0c2139SMatthew G Knepley } 1760b6dfa339SMatthew G. Knepley if (ghostIS) PetscCall(ISRestoreIndices(ghostIS, &ghostPoints)); 1761b6dfa339SMatthew G. Knepley PetscCall(ISDestroy(&ghostIS)); 1762cd0c2139SMatthew G Knepley if (label) { 17639566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(valueIS, &values)); 17649566063dSJacob Faibussowitsch PetscCall(ISDestroy(&valueIS)); 1765cd0c2139SMatthew G Knepley } 17660d4d4d06SMatthew G. Knepley for (d = 0; d <= depth; ++d) { 17679566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthStratum(sdm, d, NULL, &pEnd)); 176836dbac82SMatthew G. Knepley pMaxNew[d] = pEnd - numHybridPoints[d] - numHybridPointsOld[d]; 17690d4d4d06SMatthew G. Knepley } 17709566063dSJacob Faibussowitsch PetscCall(PetscFree3(coneNew, coneONew, supportNew)); 17719566063dSJacob Faibussowitsch PetscCall(PetscFree5(depthMax, depthEnd, depthShift, pMaxNew, numHybridPointsOld)); 17729566063dSJacob Faibussowitsch PetscCall(PetscFree7(splitIS, unsplitIS, numSplitPoints, numUnsplitPoints, numHybridPoints, splitPoints, unsplitPoints)); 1773cd0c2139SMatthew G Knepley PetscFunctionReturn(0); 1774cd0c2139SMatthew G Knepley } 1775cd0c2139SMatthew G Knepley 1776cd0c2139SMatthew G Knepley /*@C 1777cd0c2139SMatthew G Knepley DMPlexConstructCohesiveCells - Construct cohesive cells which split the face along an internal interface 1778cd0c2139SMatthew G Knepley 1779cd0c2139SMatthew G Knepley Collective on dm 1780cd0c2139SMatthew G Knepley 1781cd0c2139SMatthew G Knepley Input Parameters: 1782cd0c2139SMatthew G Knepley + dm - The original DM 178353156dfcSMatthew G. Knepley - label - The label specifying the boundary faces (this could be auto-generated) 1784cd0c2139SMatthew G Knepley 1785cd0c2139SMatthew G Knepley Output Parameters: 17867db7e0a7SMatthew G. Knepley + splitLabel - The label containing the split points, or NULL if no output is desired 1787cd0c2139SMatthew G Knepley - dmSplit - The new DM 1788cd0c2139SMatthew G Knepley 1789cd0c2139SMatthew G Knepley Level: developer 1790cd0c2139SMatthew G Knepley 1791db781477SPatrick Sanan .seealso: `DMCreate()`, `DMPlexLabelCohesiveComplete()` 1792cd0c2139SMatthew G Knepley @*/ 17939371c9d4SSatish Balay PetscErrorCode DMPlexConstructCohesiveCells(DM dm, DMLabel label, DMLabel splitLabel, DM *dmSplit) { 1794cd0c2139SMatthew G Knepley DM sdm; 1795cd0c2139SMatthew G Knepley PetscInt dim; 1796cd0c2139SMatthew G Knepley 1797cd0c2139SMatthew G Knepley PetscFunctionBegin; 1798cd0c2139SMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 1799064a246eSJacob Faibussowitsch PetscValidPointer(dmSplit, 4); 18009566063dSJacob Faibussowitsch PetscCall(DMCreate(PetscObjectComm((PetscObject)dm), &sdm)); 18019566063dSJacob Faibussowitsch PetscCall(DMSetType(sdm, DMPLEX)); 18029566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 18039566063dSJacob Faibussowitsch PetscCall(DMSetDimension(sdm, dim)); 1804cd0c2139SMatthew G Knepley switch (dim) { 1805cd0c2139SMatthew G Knepley case 2: 18069371c9d4SSatish Balay case 3: PetscCall(DMPlexConstructCohesiveCells_Internal(dm, label, splitLabel, sdm)); break; 18079371c9d4SSatish Balay default: SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Cannot construct cohesive cells for dimension %" PetscInt_FMT, dim); 1808cd0c2139SMatthew G Knepley } 1809cd0c2139SMatthew G Knepley *dmSplit = sdm; 1810cd0c2139SMatthew G Knepley PetscFunctionReturn(0); 1811cd0c2139SMatthew G Knepley } 1812cd0c2139SMatthew G Knepley 18130f66a230SMatthew G. Knepley /* Returns the side of the surface for a given cell with a face on the surface */ 18149371c9d4SSatish Balay static PetscErrorCode GetSurfaceSide_Static(DM dm, DM subdm, PetscInt numSubpoints, const PetscInt *subpoints, PetscInt cell, PetscInt face, PetscBool *pos) { 18150f66a230SMatthew G. Knepley const PetscInt *cone, *ornt; 18160f66a230SMatthew G. Knepley PetscInt dim, coneSize, c; 18170f66a230SMatthew G. Knepley 18180f66a230SMatthew G. Knepley PetscFunctionBegin; 18190f66a230SMatthew G. Knepley *pos = PETSC_TRUE; 18209566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 18219566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, cell, &coneSize)); 18229566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, cell, &cone)); 18239566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeOrientation(dm, cell, &ornt)); 18240f66a230SMatthew G. Knepley for (c = 0; c < coneSize; ++c) { 18250f66a230SMatthew G. Knepley if (cone[c] == face) { 18260f66a230SMatthew G. Knepley PetscInt o = ornt[c]; 18270f66a230SMatthew G. Knepley 18280f66a230SMatthew G. Knepley if (subdm) { 18290f66a230SMatthew G. Knepley const PetscInt *subcone, *subornt; 18300f66a230SMatthew G. Knepley PetscInt subpoint, subface, subconeSize, sc; 18310f66a230SMatthew G. Knepley 18329566063dSJacob Faibussowitsch PetscCall(PetscFindInt(cell, numSubpoints, subpoints, &subpoint)); 18339566063dSJacob Faibussowitsch PetscCall(PetscFindInt(face, numSubpoints, subpoints, &subface)); 18349566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(subdm, subpoint, &subconeSize)); 18359566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(subdm, subpoint, &subcone)); 18369566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeOrientation(subdm, subpoint, &subornt)); 18370f66a230SMatthew G. Knepley for (sc = 0; sc < subconeSize; ++sc) { 18380f66a230SMatthew G. Knepley if (subcone[sc] == subface) { 18390f66a230SMatthew G. Knepley o = subornt[0]; 18400f66a230SMatthew G. Knepley break; 18410f66a230SMatthew G. Knepley } 18420f66a230SMatthew G. Knepley } 184363a3b9bcSJacob Faibussowitsch PetscCheck(sc < subconeSize, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Could not find subpoint %" PetscInt_FMT " (%" PetscInt_FMT ") in cone for subpoint %" PetscInt_FMT " (%" PetscInt_FMT ")", subface, face, subpoint, cell); 18440f66a230SMatthew G. Knepley } 18450f66a230SMatthew G. Knepley if (o >= 0) *pos = PETSC_TRUE; 18460f66a230SMatthew G. Knepley else *pos = PETSC_FALSE; 18470f66a230SMatthew G. Knepley break; 18480f66a230SMatthew G. Knepley } 18490f66a230SMatthew G. Knepley } 185063a3b9bcSJacob Faibussowitsch PetscCheck(c != coneSize, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Cell %" PetscInt_FMT " in split face %" PetscInt_FMT " support does not have it in the cone", cell, face); 18510f66a230SMatthew G. Knepley PetscFunctionReturn(0); 18520f66a230SMatthew G. Knepley } 18530f66a230SMatthew G. Knepley 18549371c9d4SSatish Balay static PetscErrorCode CheckFaultEdge_Private(DM dm, DMLabel label) { 1855accc9626SMatthew G. Knepley IS facePosIS, faceNegIS, dimIS; 1856accc9626SMatthew G. Knepley const PetscInt *points; 1857accc9626SMatthew G. Knepley PetscInt dim, numPoints, p, shift = 100, shift2 = 200; 1858accc9626SMatthew G. Knepley 1859accc9626SMatthew G. Knepley PetscFunctionBegin; 1860accc9626SMatthew G. Knepley PetscCall(DMGetDimension(dm, &dim)); 1861accc9626SMatthew G. Knepley /* If any faces touching the fault divide cells on either side, split them */ 1862accc9626SMatthew G. Knepley PetscCall(DMLabelGetStratumIS(label, shift + dim - 1, &facePosIS)); 1863accc9626SMatthew G. Knepley PetscCall(DMLabelGetStratumIS(label, -(shift + dim - 1), &faceNegIS)); 1864accc9626SMatthew G. Knepley if (!facePosIS || !faceNegIS) { 1865accc9626SMatthew G. Knepley PetscCall(ISDestroy(&facePosIS)); 1866accc9626SMatthew G. Knepley PetscCall(ISDestroy(&faceNegIS)); 1867accc9626SMatthew G. Knepley PetscFunctionReturn(0); 1868accc9626SMatthew G. Knepley } 1869accc9626SMatthew G. Knepley PetscCall(ISExpand(facePosIS, faceNegIS, &dimIS)); 1870accc9626SMatthew G. Knepley PetscCall(ISDestroy(&facePosIS)); 1871accc9626SMatthew G. Knepley PetscCall(ISDestroy(&faceNegIS)); 1872accc9626SMatthew G. Knepley PetscCall(ISGetLocalSize(dimIS, &numPoints)); 1873accc9626SMatthew G. Knepley PetscCall(ISGetIndices(dimIS, &points)); 1874accc9626SMatthew G. Knepley for (p = 0; p < numPoints; ++p) { 1875accc9626SMatthew G. Knepley const PetscInt point = points[p]; 1876accc9626SMatthew G. Knepley const PetscInt *support; 1877accc9626SMatthew G. Knepley PetscInt supportSize, valA, valB; 1878accc9626SMatthew G. Knepley 1879accc9626SMatthew G. Knepley PetscCall(DMPlexGetSupportSize(dm, point, &supportSize)); 1880accc9626SMatthew G. Knepley if (supportSize != 2) continue; 1881accc9626SMatthew G. Knepley PetscCall(DMPlexGetSupport(dm, point, &support)); 1882accc9626SMatthew G. Knepley PetscCall(DMLabelGetValue(label, support[0], &valA)); 1883accc9626SMatthew G. Knepley PetscCall(DMLabelGetValue(label, support[1], &valB)); 1884accc9626SMatthew G. Knepley if ((valA == -1) || (valB == -1)) continue; 1885accc9626SMatthew G. Knepley if (valA * valB > 0) continue; 1886e1a13daeSMatthew G. Knepley /* Check that this face is not incident on only unsplit faces, meaning has at least one split face */ 1887e1a13daeSMatthew G. Knepley { 1888e1a13daeSMatthew G. Knepley PetscInt *closure = NULL; 1889e1a13daeSMatthew G. Knepley PetscBool split = PETSC_FALSE; 1890e1a13daeSMatthew G. Knepley PetscInt closureSize, cl; 1891e1a13daeSMatthew G. Knepley 1892e1a13daeSMatthew G. Knepley PetscCall(DMPlexGetTransitiveClosure(dm, point, PETSC_TRUE, &closureSize, &closure)); 1893e1a13daeSMatthew G. Knepley for (cl = 0; cl < closureSize * 2; cl += 2) { 1894e1a13daeSMatthew G. Knepley PetscCall(DMLabelGetValue(label, closure[cl], &valA)); 18959371c9d4SSatish Balay if ((valA >= 0) && (valA <= dim)) { 18969371c9d4SSatish Balay split = PETSC_TRUE; 18979371c9d4SSatish Balay break; 18989371c9d4SSatish Balay } 1899e1a13daeSMatthew G. Knepley } 1900e1a13daeSMatthew G. Knepley PetscCall(DMPlexRestoreTransitiveClosure(dm, point, PETSC_TRUE, &closureSize, &closure)); 1901e1a13daeSMatthew G. Knepley if (!split) continue; 1902e1a13daeSMatthew G. Knepley } 1903accc9626SMatthew G. Knepley /* Split the face */ 1904accc9626SMatthew G. Knepley PetscCall(DMLabelGetValue(label, point, &valA)); 1905accc9626SMatthew G. Knepley PetscCall(DMLabelClearValue(label, point, valA)); 1906accc9626SMatthew G. Knepley PetscCall(DMLabelSetValue(label, point, dim - 1)); 1907accc9626SMatthew G. Knepley /* Label its closure: 1908accc9626SMatthew G. Knepley unmarked: label as unsplit 1909accc9626SMatthew G. Knepley incident: relabel as split 1910accc9626SMatthew G. Knepley split: do nothing 1911accc9626SMatthew G. Knepley */ 1912accc9626SMatthew G. Knepley { 1913accc9626SMatthew G. Knepley PetscInt *closure = NULL; 1914accc9626SMatthew G. Knepley PetscInt closureSize, cl, dep; 1915accc9626SMatthew G. Knepley 1916accc9626SMatthew G. Knepley PetscCall(DMPlexGetTransitiveClosure(dm, point, PETSC_TRUE, &closureSize, &closure)); 1917accc9626SMatthew G. Knepley for (cl = 0; cl < closureSize * 2; cl += 2) { 1918accc9626SMatthew G. Knepley PetscCall(DMLabelGetValue(label, closure[cl], &valA)); 1919accc9626SMatthew G. Knepley if (valA == -1) { /* Mark as unsplit */ 1920accc9626SMatthew G. Knepley PetscCall(DMPlexGetPointDepth(dm, closure[cl], &dep)); 1921accc9626SMatthew G. Knepley PetscCall(DMLabelSetValue(label, closure[cl], shift2 + dep)); 1922accc9626SMatthew G. Knepley } else if (((valA >= shift) && (valA < shift2)) || ((valA <= -shift) && (valA > -shift2))) { 1923accc9626SMatthew G. Knepley PetscCall(DMPlexGetPointDepth(dm, closure[cl], &dep)); 1924accc9626SMatthew G. Knepley PetscCall(DMLabelClearValue(label, closure[cl], valA)); 1925accc9626SMatthew G. Knepley PetscCall(DMLabelSetValue(label, closure[cl], dep)); 1926accc9626SMatthew G. Knepley } 1927accc9626SMatthew G. Knepley } 1928accc9626SMatthew G. Knepley PetscCall(DMPlexRestoreTransitiveClosure(dm, point, PETSC_TRUE, &closureSize, &closure)); 1929accc9626SMatthew G. Knepley } 1930accc9626SMatthew G. Knepley } 1931accc9626SMatthew G. Knepley PetscCall(ISRestoreIndices(dimIS, &points)); 1932accc9626SMatthew G. Knepley PetscCall(ISDestroy(&dimIS)); 1933accc9626SMatthew G. Knepley PetscFunctionReturn(0); 1934accc9626SMatthew G. Knepley } 1935accc9626SMatthew G. Knepley 1936cd0c2139SMatthew G Knepley /*@ 19370f66a230SMatthew G. Knepley DMPlexLabelCohesiveComplete - Starting with a label marking points on an internal surface, we add all other mesh pieces 1938cd0c2139SMatthew G Knepley to complete the surface 1939cd0c2139SMatthew G Knepley 1940cd0c2139SMatthew G Knepley Input Parameters: 1941cd0c2139SMatthew G Knepley + dm - The DM 19420f66a230SMatthew G. Knepley . label - A DMLabel marking the surface 19430f66a230SMatthew G. Knepley . blabel - A DMLabel marking the vertices on the boundary which will not be duplicated, or NULL to find them automatically 1944caf9e14dSMatthew G. Knepley . bvalue - Value of DMLabel marking the vertices on the boundary 1945bb55d314SMatthew G. Knepley . flip - Flag to flip the submesh normal and replace points on the other side 194647946fd8SMatthew G. Knepley - subdm - The subDM associated with the label, or NULL 1947cd0c2139SMatthew G Knepley 1948cd0c2139SMatthew G Knepley Output Parameter: 1949cd0c2139SMatthew G Knepley . label - A DMLabel marking all surface points 1950cd0c2139SMatthew G Knepley 19510f66a230SMatthew G. Knepley Note: The vertices in blabel are called "unsplit" in the terminology from hybrid cell creation. 19520f66a230SMatthew G. Knepley 1953cd0c2139SMatthew G Knepley Level: developer 1954cd0c2139SMatthew G Knepley 1955db781477SPatrick Sanan .seealso: `DMPlexConstructCohesiveCells()`, `DMPlexLabelComplete()` 1956cd0c2139SMatthew G Knepley @*/ 19579371c9d4SSatish Balay PetscErrorCode DMPlexLabelCohesiveComplete(DM dm, DMLabel label, DMLabel blabel, PetscInt bvalue, PetscBool flip, DM subdm) { 1958d90583fdSMatthew G. Knepley DMLabel depthLabel; 1959accc9626SMatthew G. Knepley IS dimIS, subpointIS = NULL; 196047946fd8SMatthew G. Knepley const PetscInt *points, *subpoints; 1961bb55d314SMatthew G. Knepley const PetscInt rev = flip ? -1 : 1; 1962accc9626SMatthew G. Knepley PetscInt shift = 100, shift2 = 200, shift3 = 300, dim, depth, numPoints, numSubpoints, p, val; 1963cd0c2139SMatthew G Knepley 1964cd0c2139SMatthew G Knepley PetscFunctionBegin; 19659566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepth(dm, &depth)); 19669566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 19679566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthLabel(dm, &depthLabel)); 196847946fd8SMatthew G. Knepley if (subdm) { 19699566063dSJacob Faibussowitsch PetscCall(DMPlexGetSubpointIS(subdm, &subpointIS)); 197047946fd8SMatthew G. Knepley if (subpointIS) { 19719566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(subpointIS, &numSubpoints)); 19729566063dSJacob Faibussowitsch PetscCall(ISGetIndices(subpointIS, &subpoints)); 197347946fd8SMatthew G. Knepley } 197447946fd8SMatthew G. Knepley } 1975d7c8f101SMatthew G. Knepley /* Mark cell on the fault, and its faces which touch the fault: cell orientation for face gives the side of the fault */ 19769566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(label, dim - 1, &dimIS)); 1977accc9626SMatthew G. Knepley if (!dimIS) goto divide; 19789566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(dimIS, &numPoints)); 19799566063dSJacob Faibussowitsch PetscCall(ISGetIndices(dimIS, &points)); 1980d7c8f101SMatthew G. Knepley for (p = 0; p < numPoints; ++p) { /* Loop over fault faces */ 1981cd0c2139SMatthew G Knepley const PetscInt *support; 1982cd0c2139SMatthew G Knepley PetscInt supportSize, s; 1983cd0c2139SMatthew G Knepley 19849566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dm, points[p], &supportSize)); 1985c4419245SMatthew G. Knepley #if 0 1986c4419245SMatthew G. Knepley if (supportSize != 2) { 1987c4419245SMatthew G. Knepley const PetscInt *lp; 1988c4419245SMatthew G. Knepley PetscInt Nlp, pind; 1989c4419245SMatthew G. Knepley 1990c4419245SMatthew G. Knepley /* Check that for a cell with a single support face, that face is in the SF */ 1991c4419245SMatthew G. Knepley /* THis check only works for the remote side. We would need root side information */ 19929566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(dm->sf, NULL, &Nlp, &lp, NULL)); 19939566063dSJacob Faibussowitsch PetscCall(PetscFindInt(points[p], Nlp, lp, &pind)); 199463a3b9bcSJacob Faibussowitsch PetscCheck(pind >= 0,PetscObjectComm((PetscObject) dm), PETSC_ERR_ARG_WRONG, "Split face %" PetscInt_FMT " has %" PetscInt_FMT " != 2 supports, and the face is not shared with another process", points[p], supportSize); 1995c4419245SMatthew G. Knepley } 1996c4419245SMatthew G. Knepley #endif 19979566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(dm, points[p], &support)); 1998cd0c2139SMatthew G Knepley for (s = 0; s < supportSize; ++s) { 19990f66a230SMatthew G. Knepley const PetscInt *cone; 2000cd0c2139SMatthew G Knepley PetscInt coneSize, c; 20010f66a230SMatthew G. Knepley PetscBool pos; 2002cd0c2139SMatthew G Knepley 20039566063dSJacob Faibussowitsch PetscCall(GetSurfaceSide_Static(dm, subdm, numSubpoints, subpoints, support[s], points[p], &pos)); 20049566063dSJacob Faibussowitsch if (pos) PetscCall(DMLabelSetValue(label, support[s], rev * (shift + dim))); 20059566063dSJacob Faibussowitsch else PetscCall(DMLabelSetValue(label, support[s], -rev * (shift + dim))); 20060f66a230SMatthew G. Knepley if (rev < 0) pos = !pos ? PETSC_TRUE : PETSC_FALSE; 20070f66a230SMatthew G. Knepley /* Put faces touching the fault in the label */ 20089566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, support[s], &coneSize)); 20099566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, support[s], &cone)); 2010cd0c2139SMatthew G Knepley for (c = 0; c < coneSize; ++c) { 2011cd0c2139SMatthew G Knepley const PetscInt point = cone[c]; 2012cd0c2139SMatthew G Knepley 20139566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, point, &val)); 2014cd0c2139SMatthew G Knepley if (val == -1) { 2015cd0c2139SMatthew G Knepley PetscInt *closure = NULL; 2016cd0c2139SMatthew G Knepley PetscInt closureSize, cl; 2017cd0c2139SMatthew G Knepley 20189566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(dm, point, PETSC_TRUE, &closureSize, &closure)); 2019cd0c2139SMatthew G Knepley for (cl = 0; cl < closureSize * 2; cl += 2) { 2020cd0c2139SMatthew G Knepley const PetscInt clp = closure[cl]; 2021a0541d8aSMatthew G. Knepley PetscInt bval = -1; 2022cd0c2139SMatthew G Knepley 20239566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, clp, &val)); 20249566063dSJacob Faibussowitsch if (blabel) PetscCall(DMLabelGetValue(blabel, clp, &bval)); 2025a0541d8aSMatthew G. Knepley if ((val >= 0) && (val < dim - 1) && (bval < 0)) { 20269566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(label, point, pos == PETSC_TRUE ? shift + dim - 1 : -(shift + dim - 1))); 2027cd0c2139SMatthew G Knepley break; 2028cd0c2139SMatthew G Knepley } 2029cd0c2139SMatthew G Knepley } 20309566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dm, point, PETSC_TRUE, &closureSize, &closure)); 2031cd0c2139SMatthew G Knepley } 2032cd0c2139SMatthew G Knepley } 2033cd0c2139SMatthew G Knepley } 2034cd0c2139SMatthew G Knepley } 2035accc9626SMatthew G. Knepley PetscCall(ISRestoreIndices(dimIS, &points)); 2036accc9626SMatthew G. Knepley PetscCall(ISDestroy(&dimIS)); 2037a0541d8aSMatthew G. Knepley /* Mark boundary points as unsplit */ 203886200784SMatthew G. Knepley if (blabel) { 2039accc9626SMatthew G. Knepley IS bdIS; 2040accc9626SMatthew G. Knepley 2041caf9e14dSMatthew G. Knepley PetscCall(DMLabelGetStratumIS(blabel, bvalue, &bdIS)); 2042accc9626SMatthew G. Knepley PetscCall(ISGetLocalSize(bdIS, &numPoints)); 2043accc9626SMatthew G. Knepley PetscCall(ISGetIndices(bdIS, &points)); 2044a0541d8aSMatthew G. Knepley for (p = 0; p < numPoints; ++p) { 2045a0541d8aSMatthew G. Knepley const PetscInt point = points[p]; 2046a0541d8aSMatthew G. Knepley PetscInt val, bval; 2047a0541d8aSMatthew G. Knepley 20489566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(blabel, point, &bval)); 2049a0541d8aSMatthew G. Knepley if (bval >= 0) { 20509566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, point, &val)); 2051f7019248SMatthew G. Knepley if ((val < 0) || (val > dim)) { 2052f7019248SMatthew G. Knepley /* This could be a point added from splitting a vertex on an adjacent fault, otherwise its just wrong */ 20539566063dSJacob Faibussowitsch PetscCall(DMLabelClearValue(blabel, point, bval)); 2054f7019248SMatthew G. Knepley } 2055f7019248SMatthew G. Knepley } 2056f7019248SMatthew G. Knepley } 2057f7019248SMatthew G. Knepley for (p = 0; p < numPoints; ++p) { 2058f7019248SMatthew G. Knepley const PetscInt point = points[p]; 2059f7019248SMatthew G. Knepley PetscInt val, bval; 2060f7019248SMatthew G. Knepley 20619566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(blabel, point, &bval)); 2062f7019248SMatthew G. Knepley if (bval >= 0) { 206386200784SMatthew G. Knepley const PetscInt *cone, *support; 206486200784SMatthew G. Knepley PetscInt coneSize, supportSize, s, valA, valB, valE; 206586200784SMatthew G. Knepley 2066a0541d8aSMatthew G. Knepley /* Mark as unsplit */ 20679566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, point, &val)); 2068e1a13daeSMatthew G. Knepley PetscCheck(val >= 0 && val <= dim, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Point %" PetscInt_FMT " has label value %" PetscInt_FMT ", should be part of the fault", point, val); 20699566063dSJacob Faibussowitsch PetscCall(DMLabelClearValue(label, point, val)); 20709566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(label, point, shift2 + val)); 20712c06a818SMatthew G. Knepley /* Check for cross-edge 20722c06a818SMatthew G. Knepley A cross-edge has endpoints which are both on the boundary of the surface, but the edge itself is not. */ 207386200784SMatthew G. Knepley if (val != 0) continue; 20749566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(dm, point, &support)); 20759566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dm, point, &supportSize)); 207686200784SMatthew G. Knepley for (s = 0; s < supportSize; ++s) { 20779566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, support[s], &cone)); 20789566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, support[s], &coneSize)); 207963a3b9bcSJacob Faibussowitsch PetscCheck(coneSize == 2, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Edge %" PetscInt_FMT " has %" PetscInt_FMT " vertices != 2", support[s], coneSize); 20809566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(blabel, cone[0], &valA)); 20819566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(blabel, cone[1], &valB)); 20829566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(blabel, support[s], &valE)); 20839566063dSJacob Faibussowitsch if ((valE < 0) && (valA >= 0) && (valB >= 0) && (cone[0] != cone[1])) PetscCall(DMLabelSetValue(blabel, support[s], 2)); 208486200784SMatthew G. Knepley } 2085a0541d8aSMatthew G. Knepley } 2086a0541d8aSMatthew G. Knepley } 2087accc9626SMatthew G. Knepley PetscCall(ISRestoreIndices(bdIS, &points)); 2088accc9626SMatthew G. Knepley PetscCall(ISDestroy(&bdIS)); 2089a0541d8aSMatthew G. Knepley } 2090b6dfa339SMatthew G. Knepley /* Mark ghost fault cells */ 2091b6dfa339SMatthew G. Knepley { 2092b6dfa339SMatthew G. Knepley PetscSF sf; 2093b6dfa339SMatthew G. Knepley const PetscInt *leaves; 2094b6dfa339SMatthew G. Knepley PetscInt Nl, l; 2095b6dfa339SMatthew G. Knepley 2096b6dfa339SMatthew G. Knepley PetscCall(DMGetPointSF(dm, &sf)); 2097b6dfa339SMatthew G. Knepley PetscCall(PetscSFGetGraph(sf, NULL, &Nl, &leaves, NULL)); 2098accc9626SMatthew G. Knepley PetscCall(DMLabelGetStratumIS(label, dim - 1, &dimIS)); 2099accc9626SMatthew G. Knepley if (!dimIS) goto divide; 2100accc9626SMatthew G. Knepley PetscCall(ISGetLocalSize(dimIS, &numPoints)); 2101accc9626SMatthew G. Knepley PetscCall(ISGetIndices(dimIS, &points)); 2102b6dfa339SMatthew G. Knepley if (Nl > 0) { 2103b6dfa339SMatthew G. Knepley for (p = 0; p < numPoints; ++p) { 2104b6dfa339SMatthew G. Knepley const PetscInt point = points[p]; 2105b6dfa339SMatthew G. Knepley PetscInt val; 2106b6dfa339SMatthew G. Knepley 2107b6dfa339SMatthew G. Knepley PetscCall(PetscFindInt(point, Nl, leaves, &l)); 2108b6dfa339SMatthew G. Knepley if (l >= 0) { 2109b6dfa339SMatthew G. Knepley PetscInt *closure = NULL; 2110b6dfa339SMatthew G. Knepley PetscInt closureSize, cl; 2111b6dfa339SMatthew G. Knepley 2112b6dfa339SMatthew G. Knepley PetscCall(DMLabelGetValue(label, point, &val)); 2113b6dfa339SMatthew G. Knepley PetscCheck((val == dim - 1) || (val == shift2 + dim - 1), PETSC_COMM_SELF, PETSC_ERR_PLIB, "Point %" PetscInt_FMT " has label value %" PetscInt_FMT ", should be a fault face", point, val); 2114b6dfa339SMatthew G. Knepley PetscCall(DMLabelClearValue(label, point, val)); 2115b6dfa339SMatthew G. Knepley PetscCall(DMLabelSetValue(label, point, shift3 + val)); 2116b6dfa339SMatthew G. Knepley PetscCall(DMPlexGetTransitiveClosure(dm, point, PETSC_TRUE, &closureSize, &closure)); 2117accc9626SMatthew G. Knepley for (cl = 2; cl < closureSize * 2; cl += 2) { 2118b6dfa339SMatthew G. Knepley const PetscInt clp = closure[cl]; 2119b6dfa339SMatthew G. Knepley 2120b6dfa339SMatthew G. Knepley PetscCall(DMLabelGetValue(label, clp, &val)); 2121b6dfa339SMatthew G. Knepley PetscCheck(val != -1, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Point %" PetscInt_FMT " is missing from label, but is in the closure of a fault face", point); 2122b6dfa339SMatthew G. Knepley PetscCall(DMLabelClearValue(label, clp, val)); 2123b6dfa339SMatthew G. Knepley PetscCall(DMLabelSetValue(label, clp, shift3 + val)); 2124b6dfa339SMatthew G. Knepley } 2125b6dfa339SMatthew G. Knepley PetscCall(DMPlexRestoreTransitiveClosure(dm, point, PETSC_TRUE, &closureSize, &closure)); 2126b6dfa339SMatthew G. Knepley } 2127b6dfa339SMatthew G. Knepley } 2128b6dfa339SMatthew G. Knepley } 2129b6dfa339SMatthew G. Knepley PetscCall(ISRestoreIndices(dimIS, &points)); 2130b6dfa339SMatthew G. Knepley PetscCall(ISDestroy(&dimIS)); 2131accc9626SMatthew G. Knepley } 2132accc9626SMatthew G. Knepley divide: 2133b6dfa339SMatthew G. Knepley if (subpointIS) PetscCall(ISRestoreIndices(subpointIS, &subpoints)); 2134accc9626SMatthew G. Knepley PetscCall(DMPlexLabelFaultHalo(dm, label)); 2135accc9626SMatthew G. Knepley PetscCall(CheckFaultEdge_Private(dm, label)); 2136cd0c2139SMatthew G Knepley PetscFunctionReturn(0); 2137cd0c2139SMatthew G Knepley } 2138cd0c2139SMatthew G Knepley 2139720e594eSMatthew G. Knepley /* Check that no cell have all vertices on the fault */ 21409371c9d4SSatish Balay PetscErrorCode DMPlexCheckValidSubmesh_Private(DM dm, DMLabel label, DM subdm) { 2141720e594eSMatthew G. Knepley IS subpointIS; 2142720e594eSMatthew G. Knepley const PetscInt *dmpoints; 2143720e594eSMatthew G. Knepley PetscInt defaultValue, cStart, cEnd, c, vStart, vEnd; 2144720e594eSMatthew G. Knepley 2145720e594eSMatthew G. Knepley PetscFunctionBegin; 2146720e594eSMatthew G. Knepley if (!label) PetscFunctionReturn(0); 21479566063dSJacob Faibussowitsch PetscCall(DMLabelGetDefaultValue(label, &defaultValue)); 21489566063dSJacob Faibussowitsch PetscCall(DMPlexGetSubpointIS(subdm, &subpointIS)); 2149720e594eSMatthew G. Knepley if (!subpointIS) PetscFunctionReturn(0); 21509566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(subdm, 0, &cStart, &cEnd)); 21519566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthStratum(dm, 0, &vStart, &vEnd)); 21529566063dSJacob Faibussowitsch PetscCall(ISGetIndices(subpointIS, &dmpoints)); 2153720e594eSMatthew G. Knepley for (c = cStart; c < cEnd; ++c) { 2154720e594eSMatthew G. Knepley PetscBool invalidCell = PETSC_TRUE; 2155720e594eSMatthew G. Knepley PetscInt *closure = NULL; 2156720e594eSMatthew G. Knepley PetscInt closureSize, cl; 2157720e594eSMatthew G. Knepley 21589566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(dm, dmpoints[c], PETSC_TRUE, &closureSize, &closure)); 2159720e594eSMatthew G. Knepley for (cl = 0; cl < closureSize * 2; cl += 2) { 2160720e594eSMatthew G. Knepley PetscInt value = 0; 2161720e594eSMatthew G. Knepley 2162720e594eSMatthew G. Knepley if ((closure[cl] < vStart) || (closure[cl] >= vEnd)) continue; 21639566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, closure[cl], &value)); 21649371c9d4SSatish Balay if (value == defaultValue) { 21659371c9d4SSatish Balay invalidCell = PETSC_FALSE; 21669371c9d4SSatish Balay break; 21679371c9d4SSatish Balay } 2168720e594eSMatthew G. Knepley } 21699566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dm, dmpoints[c], PETSC_TRUE, &closureSize, &closure)); 2170720e594eSMatthew G. Knepley if (invalidCell) { 21719566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(subpointIS, &dmpoints)); 21729566063dSJacob Faibussowitsch PetscCall(ISDestroy(&subpointIS)); 21739566063dSJacob Faibussowitsch PetscCall(DMDestroy(&subdm)); 217463a3b9bcSJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Ambiguous submesh. Cell %" PetscInt_FMT " has all of its vertices on the submesh.", dmpoints[c]); 2175720e594eSMatthew G. Knepley } 2176720e594eSMatthew G. Knepley } 21779566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(subpointIS, &dmpoints)); 2178720e594eSMatthew G. Knepley PetscFunctionReturn(0); 2179720e594eSMatthew G. Knepley } 2180720e594eSMatthew G. Knepley 2181c08575a3SMatthew G. Knepley /*@ 21823cf72582SMatthew G. Knepley DMPlexCreateHybridMesh - Create a mesh with hybrid cells along an internal interface 21833cf72582SMatthew G. Knepley 21843cf72582SMatthew G. Knepley Collective on dm 21853cf72582SMatthew G. Knepley 21863cf72582SMatthew G. Knepley Input Parameters: 21873cf72582SMatthew G. Knepley + dm - The original DM 2188720e594eSMatthew G. Knepley . label - The label specifying the interface vertices 2189caf9e14dSMatthew G. Knepley . bdlabel - The optional label specifying the interface boundary vertices 2190caf9e14dSMatthew G. Knepley - bdvalue - Value of optional label specifying the interface boundary vertices 21913cf72582SMatthew G. Knepley 21923cf72582SMatthew G. Knepley Output Parameters: 21937db7e0a7SMatthew G. Knepley + hybridLabel - The label fully marking the interface, or NULL if no output is desired 21947db7e0a7SMatthew G. Knepley . splitLabel - The label containing the split points, or NULL if no output is desired 2195720e594eSMatthew G. Knepley . dmInterface - The new interface DM, or NULL 2196720e594eSMatthew G. Knepley - dmHybrid - The new DM with cohesive cells 21973cf72582SMatthew G. Knepley 21986eccb800SMatthew Knepley Note: The hybridLabel indicates what parts of the original mesh impinged on the on division surface. For points 21996eccb800SMatthew Knepley directly on the division surface, they are labeled with their dimension, so an edge 7 on the division surface would be 22006eccb800SMatthew Knepley 7 (1) in hybridLabel. For points that impinge from the positive side, they are labeled with 100+dim, so an edge 6 with 22016eccb800SMatthew Knepley one vertex 3 on the surface would be 6 (101) and 3 (0) in hybridLabel. If an edge 9 from the negative side of the 22026eccb800SMatthew Knepley surface also hits vertex 3, it would be 9 (-101) in hybridLabel. 22036eccb800SMatthew Knepley 22046eccb800SMatthew Knepley The splitLabel indicates what points in the new hybrid mesh were the result of splitting points in the original 22056eccb800SMatthew Knepley mesh. The label value is +=100+dim for each point. For example, if two edges 10 and 14 in the hybrid resulting from 22066eccb800SMatthew Knepley splitting an edge in the original mesh, you would have 10 (101) and 14 (-101) in the splitLabel. 22076eccb800SMatthew Knepley 22086eccb800SMatthew Knepley The dmInterface is a DM built from the original division surface. It has a label which can be retrieved using 22096eccb800SMatthew Knepley DMPlexGetSubpointMap() which maps each point back to the point in the surface of the original mesh. 22106eccb800SMatthew Knepley 22113cf72582SMatthew G. Knepley Level: developer 22123cf72582SMatthew G. Knepley 2213db781477SPatrick Sanan .seealso: `DMPlexConstructCohesiveCells()`, `DMPlexLabelCohesiveComplete()`, `DMPlexGetSubpointMap()`, `DMCreate()` 22143cf72582SMatthew G. Knepley @*/ 22159371c9d4SSatish Balay PetscErrorCode DMPlexCreateHybridMesh(DM dm, DMLabel label, DMLabel bdlabel, PetscInt bdvalue, DMLabel *hybridLabel, DMLabel *splitLabel, DM *dmInterface, DM *dmHybrid) { 22163cf72582SMatthew G. Knepley DM idm; 22177db7e0a7SMatthew G. Knepley DMLabel subpointMap, hlabel, slabel = NULL; 22183cf72582SMatthew G. Knepley PetscInt dim; 22193cf72582SMatthew G. Knepley 22203cf72582SMatthew G. Knepley PetscFunctionBegin; 22213cf72582SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 222292ef8ba2SVaclav Hapla if (label) PetscValidPointer(label, 2); 2223720e594eSMatthew G. Knepley if (bdlabel) PetscValidPointer(bdlabel, 3); 222492ef8ba2SVaclav Hapla if (hybridLabel) PetscValidPointer(hybridLabel, 5); 222592ef8ba2SVaclav Hapla if (splitLabel) PetscValidPointer(splitLabel, 6); 222692ef8ba2SVaclav Hapla if (dmInterface) PetscValidPointer(dmInterface, 7); 222792ef8ba2SVaclav Hapla PetscValidPointer(dmHybrid, 8); 22289566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 22299566063dSJacob Faibussowitsch PetscCall(DMPlexCreateSubmesh(dm, label, 1, PETSC_FALSE, &idm)); 22309566063dSJacob Faibussowitsch PetscCall(DMPlexCheckValidSubmesh_Private(dm, label, idm)); 22319566063dSJacob Faibussowitsch PetscCall(DMPlexOrient(idm)); 22329566063dSJacob Faibussowitsch PetscCall(DMPlexGetSubpointMap(idm, &subpointMap)); 22339566063dSJacob Faibussowitsch PetscCall(DMLabelDuplicate(subpointMap, &hlabel)); 22349566063dSJacob Faibussowitsch PetscCall(DMLabelClearStratum(hlabel, dim)); 22357db7e0a7SMatthew G. Knepley if (splitLabel) { 22367db7e0a7SMatthew G. Knepley const char *name; 22377db7e0a7SMatthew G. Knepley char sname[PETSC_MAX_PATH_LEN]; 22387db7e0a7SMatthew G. Knepley 22399566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)hlabel, &name)); 22409566063dSJacob Faibussowitsch PetscCall(PetscStrncpy(sname, name, PETSC_MAX_PATH_LEN)); 22419566063dSJacob Faibussowitsch PetscCall(PetscStrcat(sname, " split")); 22429566063dSJacob Faibussowitsch PetscCall(DMLabelCreate(PETSC_COMM_SELF, sname, &slabel)); 22437db7e0a7SMatthew G. Knepley } 2244caf9e14dSMatthew G. Knepley PetscCall(DMPlexLabelCohesiveComplete(dm, hlabel, bdlabel, bdvalue, PETSC_FALSE, idm)); 22459371c9d4SSatish Balay if (dmInterface) { 22469371c9d4SSatish Balay *dmInterface = idm; 22479371c9d4SSatish Balay } else PetscCall(DMDestroy(&idm)); 22489566063dSJacob Faibussowitsch PetscCall(DMPlexConstructCohesiveCells(dm, hlabel, slabel, dmHybrid)); 22495de52c6dSVaclav Hapla PetscCall(DMPlexCopy_Internal(dm, PETSC_TRUE, PETSC_TRUE, *dmHybrid)); 22503cf72582SMatthew G. Knepley if (hybridLabel) *hybridLabel = hlabel; 22519566063dSJacob Faibussowitsch else PetscCall(DMLabelDestroy(&hlabel)); 22527db7e0a7SMatthew G. Knepley if (splitLabel) *splitLabel = slabel; 22534a7ee7d0SMatthew G. Knepley { 22544a7ee7d0SMatthew G. Knepley DM cdm; 22554a7ee7d0SMatthew G. Knepley DMLabel ctLabel; 22564a7ee7d0SMatthew G. Knepley 22574a7ee7d0SMatthew G. Knepley /* We need to somehow share the celltype label with the coordinate dm */ 22589566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDM(*dmHybrid, &cdm)); 22599566063dSJacob Faibussowitsch PetscCall(DMPlexGetCellTypeLabel(*dmHybrid, &ctLabel)); 22609566063dSJacob Faibussowitsch PetscCall(DMSetLabel(cdm, ctLabel)); 22614a7ee7d0SMatthew G. Knepley } 2262cd0c2139SMatthew G Knepley PetscFunctionReturn(0); 2263cd0c2139SMatthew G Knepley } 2264cd0c2139SMatthew G Knepley 2265efa14ee0SMatthew G Knepley /* Here we need the explicit assumption that: 2266efa14ee0SMatthew G Knepley 2267efa14ee0SMatthew G Knepley For any marked cell, the marked vertices constitute a single face 2268efa14ee0SMatthew G Knepley */ 22699371c9d4SSatish Balay static PetscErrorCode DMPlexMarkSubmesh_Uninterpolated(DM dm, DMLabel vertexLabel, PetscInt value, DMLabel subpointMap, PetscInt *numFaces, PetscInt *nFV, DM subdm) { 2270fed694aaSMatthew G. Knepley IS subvertexIS = NULL; 2271efa14ee0SMatthew G Knepley const PetscInt *subvertices; 2272412e9a14SMatthew G. Knepley PetscInt *pStart, *pEnd, pSize; 2273efa14ee0SMatthew G Knepley PetscInt depth, dim, d, numSubVerticesInitial = 0, v; 2274efa14ee0SMatthew G Knepley 2275efa14ee0SMatthew G Knepley PetscFunctionBegin; 2276efa14ee0SMatthew G Knepley *numFaces = 0; 2277efa14ee0SMatthew G Knepley *nFV = 0; 22789566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepth(dm, &depth)); 22799566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 228077d178adSMatthew G. Knepley pSize = PetscMax(depth, dim) + 1; 22819566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(pSize, &pStart, pSize, &pEnd)); 228248a46eb9SPierre Jolivet for (d = 0; d <= depth; ++d) PetscCall(DMPlexGetSimplexOrBoxCells(dm, depth - d, &pStart[d], &pEnd[d])); 2283efa14ee0SMatthew G Knepley /* Loop over initial vertices and mark all faces in the collective star() */ 22849566063dSJacob Faibussowitsch if (vertexLabel) PetscCall(DMLabelGetStratumIS(vertexLabel, value, &subvertexIS)); 2285efa14ee0SMatthew G Knepley if (subvertexIS) { 22869566063dSJacob Faibussowitsch PetscCall(ISGetSize(subvertexIS, &numSubVerticesInitial)); 22879566063dSJacob Faibussowitsch PetscCall(ISGetIndices(subvertexIS, &subvertices)); 2288efa14ee0SMatthew G Knepley } 2289efa14ee0SMatthew G Knepley for (v = 0; v < numSubVerticesInitial; ++v) { 2290efa14ee0SMatthew G Knepley const PetscInt vertex = subvertices[v]; 22910298fd71SBarry Smith PetscInt *star = NULL; 2292efa14ee0SMatthew G Knepley PetscInt starSize, s, numCells = 0, c; 2293efa14ee0SMatthew G Knepley 22949566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(dm, vertex, PETSC_FALSE, &starSize, &star)); 2295efa14ee0SMatthew G Knepley for (s = 0; s < starSize * 2; s += 2) { 2296efa14ee0SMatthew G Knepley const PetscInt point = star[s]; 2297efa14ee0SMatthew G Knepley if ((point >= pStart[depth]) && (point < pEnd[depth])) star[numCells++] = point; 2298efa14ee0SMatthew G Knepley } 2299efa14ee0SMatthew G Knepley for (c = 0; c < numCells; ++c) { 2300efa14ee0SMatthew G Knepley const PetscInt cell = star[c]; 23010298fd71SBarry Smith PetscInt *closure = NULL; 2302efa14ee0SMatthew G Knepley PetscInt closureSize, cl; 2303efa14ee0SMatthew G Knepley PetscInt cellLoc, numCorners = 0, faceSize = 0; 2304efa14ee0SMatthew G Knepley 23059566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(subpointMap, cell, &cellLoc)); 230665560c7fSMatthew G Knepley if (cellLoc == 2) continue; 230763a3b9bcSJacob Faibussowitsch PetscCheck(cellLoc < 0, PetscObjectComm((PetscObject)dm), PETSC_ERR_PLIB, "Cell %" PetscInt_FMT " has dimension %" PetscInt_FMT " in the surface label", cell, cellLoc); 23089566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(dm, cell, PETSC_TRUE, &closureSize, &closure)); 2309efa14ee0SMatthew G Knepley for (cl = 0; cl < closureSize * 2; cl += 2) { 2310efa14ee0SMatthew G Knepley const PetscInt point = closure[cl]; 2311efa14ee0SMatthew G Knepley PetscInt vertexLoc; 2312efa14ee0SMatthew G Knepley 2313efa14ee0SMatthew G Knepley if ((point >= pStart[0]) && (point < pEnd[0])) { 2314efa14ee0SMatthew G Knepley ++numCorners; 23159566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(vertexLabel, point, &vertexLoc)); 2316830e53efSMatthew G. Knepley if (vertexLoc == value) closure[faceSize++] = point; 2317efa14ee0SMatthew G Knepley } 2318efa14ee0SMatthew G Knepley } 23199566063dSJacob Faibussowitsch if (!(*nFV)) PetscCall(DMPlexGetNumFaceVertices(dm, dim, numCorners, nFV)); 232063a3b9bcSJacob Faibussowitsch PetscCheck(faceSize <= *nFV, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Invalid submesh: Too many vertices %" PetscInt_FMT " of an element on the surface", faceSize); 2321efa14ee0SMatthew G Knepley if (faceSize == *nFV) { 2322007baee2SMatthew G. Knepley const PetscInt *cells = NULL; 2323007baee2SMatthew G. Knepley PetscInt numCells, nc; 2324007baee2SMatthew G. Knepley 2325efa14ee0SMatthew G Knepley ++(*numFaces); 232648a46eb9SPierre Jolivet for (cl = 0; cl < faceSize; ++cl) PetscCall(DMLabelSetValue(subpointMap, closure[cl], 0)); 23279566063dSJacob Faibussowitsch PetscCall(DMPlexGetJoin(dm, faceSize, closure, &numCells, &cells)); 232848a46eb9SPierre Jolivet for (nc = 0; nc < numCells; ++nc) PetscCall(DMLabelSetValue(subpointMap, cells[nc], 2)); 23299566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreJoin(dm, faceSize, closure, &numCells, &cells)); 2330efa14ee0SMatthew G Knepley } 23319566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dm, cell, PETSC_TRUE, &closureSize, &closure)); 2332efa14ee0SMatthew G Knepley } 23339566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dm, vertex, PETSC_FALSE, &starSize, &star)); 2334efa14ee0SMatthew G Knepley } 233548a46eb9SPierre Jolivet if (subvertexIS) PetscCall(ISRestoreIndices(subvertexIS, &subvertices)); 23369566063dSJacob Faibussowitsch PetscCall(ISDestroy(&subvertexIS)); 23379566063dSJacob Faibussowitsch PetscCall(PetscFree2(pStart, pEnd)); 2338efa14ee0SMatthew G Knepley PetscFunctionReturn(0); 2339efa14ee0SMatthew G Knepley } 2340efa14ee0SMatthew G Knepley 23419371c9d4SSatish Balay static PetscErrorCode DMPlexMarkSubmesh_Interpolated(DM dm, DMLabel vertexLabel, PetscInt value, PetscBool markedFaces, DMLabel subpointMap, DM subdm) { 234234b4c39eSMatthew G. Knepley IS subvertexIS = NULL; 2343efa14ee0SMatthew G Knepley const PetscInt *subvertices; 2344412e9a14SMatthew G. Knepley PetscInt *pStart, *pEnd; 2345efa14ee0SMatthew G Knepley PetscInt dim, d, numSubVerticesInitial = 0, v; 2346efa14ee0SMatthew G Knepley 2347efa14ee0SMatthew G Knepley PetscFunctionBegin; 23489566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 23499566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(dim + 1, &pStart, dim + 1, &pEnd)); 235048a46eb9SPierre Jolivet for (d = 0; d <= dim; ++d) PetscCall(DMPlexGetSimplexOrBoxCells(dm, dim - d, &pStart[d], &pEnd[d])); 2351efa14ee0SMatthew G Knepley /* Loop over initial vertices and mark all faces in the collective star() */ 235234b4c39eSMatthew G. Knepley if (vertexLabel) { 23539566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(vertexLabel, value, &subvertexIS)); 2354efa14ee0SMatthew G Knepley if (subvertexIS) { 23559566063dSJacob Faibussowitsch PetscCall(ISGetSize(subvertexIS, &numSubVerticesInitial)); 23569566063dSJacob Faibussowitsch PetscCall(ISGetIndices(subvertexIS, &subvertices)); 2357efa14ee0SMatthew G Knepley } 235834b4c39eSMatthew G. Knepley } 2359efa14ee0SMatthew G Knepley for (v = 0; v < numSubVerticesInitial; ++v) { 2360efa14ee0SMatthew G Knepley const PetscInt vertex = subvertices[v]; 23610298fd71SBarry Smith PetscInt *star = NULL; 2362efa14ee0SMatthew G Knepley PetscInt starSize, s, numFaces = 0, f; 2363efa14ee0SMatthew G Knepley 23649566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(dm, vertex, PETSC_FALSE, &starSize, &star)); 2365efa14ee0SMatthew G Knepley for (s = 0; s < starSize * 2; s += 2) { 2366efa14ee0SMatthew G Knepley const PetscInt point = star[s]; 2367158acfadSMatthew G. Knepley PetscInt faceLoc; 2368158acfadSMatthew G. Knepley 2369158acfadSMatthew G. Knepley if ((point >= pStart[dim - 1]) && (point < pEnd[dim - 1])) { 2370158acfadSMatthew G. Knepley if (markedFaces) { 23719566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(vertexLabel, point, &faceLoc)); 2372158acfadSMatthew G. Knepley if (faceLoc < 0) continue; 2373158acfadSMatthew G. Knepley } 2374158acfadSMatthew G. Knepley star[numFaces++] = point; 2375158acfadSMatthew G. Knepley } 2376efa14ee0SMatthew G Knepley } 2377efa14ee0SMatthew G Knepley for (f = 0; f < numFaces; ++f) { 2378efa14ee0SMatthew G Knepley const PetscInt face = star[f]; 23790298fd71SBarry Smith PetscInt *closure = NULL; 2380efa14ee0SMatthew G Knepley PetscInt closureSize, c; 2381efa14ee0SMatthew G Knepley PetscInt faceLoc; 2382efa14ee0SMatthew G Knepley 23839566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(subpointMap, face, &faceLoc)); 2384efa14ee0SMatthew G Knepley if (faceLoc == dim - 1) continue; 238563a3b9bcSJacob Faibussowitsch PetscCheck(faceLoc < 0, PetscObjectComm((PetscObject)dm), PETSC_ERR_PLIB, "Face %" PetscInt_FMT " has dimension %" PetscInt_FMT " in the surface label", face, faceLoc); 23869566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(dm, face, PETSC_TRUE, &closureSize, &closure)); 2387efa14ee0SMatthew G Knepley for (c = 0; c < closureSize * 2; c += 2) { 2388efa14ee0SMatthew G Knepley const PetscInt point = closure[c]; 2389efa14ee0SMatthew G Knepley PetscInt vertexLoc; 2390efa14ee0SMatthew G Knepley 2391efa14ee0SMatthew G Knepley if ((point >= pStart[0]) && (point < pEnd[0])) { 23929566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(vertexLabel, point, &vertexLoc)); 2393830e53efSMatthew G. Knepley if (vertexLoc != value) break; 2394efa14ee0SMatthew G Knepley } 2395efa14ee0SMatthew G Knepley } 2396efa14ee0SMatthew G Knepley if (c == closureSize * 2) { 2397efa14ee0SMatthew G Knepley const PetscInt *support; 2398efa14ee0SMatthew G Knepley PetscInt supportSize, s; 2399efa14ee0SMatthew G Knepley 2400efa14ee0SMatthew G Knepley for (c = 0; c < closureSize * 2; c += 2) { 2401efa14ee0SMatthew G Knepley const PetscInt point = closure[c]; 2402efa14ee0SMatthew G Knepley 2403efa14ee0SMatthew G Knepley for (d = 0; d < dim; ++d) { 2404efa14ee0SMatthew G Knepley if ((point >= pStart[d]) && (point < pEnd[d])) { 24059566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(subpointMap, point, d)); 2406efa14ee0SMatthew G Knepley break; 2407efa14ee0SMatthew G Knepley } 2408efa14ee0SMatthew G Knepley } 2409efa14ee0SMatthew G Knepley } 24109566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dm, face, &supportSize)); 24119566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(dm, face, &support)); 241248a46eb9SPierre Jolivet for (s = 0; s < supportSize; ++s) PetscCall(DMLabelSetValue(subpointMap, support[s], dim)); 2413efa14ee0SMatthew G Knepley } 24149566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dm, face, PETSC_TRUE, &closureSize, &closure)); 2415efa14ee0SMatthew G Knepley } 24169566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dm, vertex, PETSC_FALSE, &starSize, &star)); 2417efa14ee0SMatthew G Knepley } 24189566063dSJacob Faibussowitsch if (subvertexIS) PetscCall(ISRestoreIndices(subvertexIS, &subvertices)); 24199566063dSJacob Faibussowitsch PetscCall(ISDestroy(&subvertexIS)); 24209566063dSJacob Faibussowitsch PetscCall(PetscFree2(pStart, pEnd)); 2421efa14ee0SMatthew G Knepley PetscFunctionReturn(0); 2422efa14ee0SMatthew G Knepley } 2423efa14ee0SMatthew G Knepley 24249371c9d4SSatish Balay static PetscErrorCode DMPlexMarkCohesiveSubmesh_Uninterpolated(DM dm, PetscBool hasLagrange, const char labelname[], PetscInt value, DMLabel subpointMap, PetscInt *numFaces, PetscInt *nFV, PetscInt *subCells[], DM subdm) { 242527c04023SMatthew G. Knepley DMLabel label = NULL; 2426766ab985SMatthew G. Knepley const PetscInt *cone; 24279fc93327SToby Isaac PetscInt dim, cMax, cEnd, c, subc = 0, p, coneSize = -1; 2428766ab985SMatthew G. Knepley 2429812bfc34SJed Brown PetscFunctionBegin; 2430c0ed958bSJed Brown *numFaces = 0; 2431c0ed958bSJed Brown *nFV = 0; 24329566063dSJacob Faibussowitsch if (labelname) PetscCall(DMGetLabel(dm, labelname, &label)); 2433fed694aaSMatthew G. Knepley *subCells = NULL; 24349566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 24359566063dSJacob Faibussowitsch PetscCall(DMPlexGetTensorPrismBounds_Internal(dm, dim, &cMax, &cEnd)); 2436766ab985SMatthew G. Knepley if (cMax < 0) PetscFunctionReturn(0); 243727c04023SMatthew G. Knepley if (label) { 243827c04023SMatthew G. Knepley for (c = cMax; c < cEnd; ++c) { 243927c04023SMatthew G. Knepley PetscInt val; 244027c04023SMatthew G. Knepley 24419566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, c, &val)); 244227c04023SMatthew G. Knepley if (val == value) { 244327c04023SMatthew G. Knepley ++(*numFaces); 24449566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, c, &coneSize)); 244527c04023SMatthew G. Knepley } 244627c04023SMatthew G. Knepley } 244727c04023SMatthew G. Knepley } else { 2448766ab985SMatthew G. Knepley *numFaces = cEnd - cMax; 24499566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, cMax, &coneSize)); 245027c04023SMatthew G. Knepley } 24519566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(*numFaces * 2, subCells)); 24529fc93327SToby Isaac if (!(*numFaces)) PetscFunctionReturn(0); 24539fc93327SToby Isaac *nFV = hasLagrange ? coneSize / 3 : coneSize / 2; 2454766ab985SMatthew G. Knepley for (c = cMax; c < cEnd; ++c) { 2455766ab985SMatthew G. Knepley const PetscInt *cells; 2456766ab985SMatthew G. Knepley PetscInt numCells; 2457766ab985SMatthew G. Knepley 245827c04023SMatthew G. Knepley if (label) { 245927c04023SMatthew G. Knepley PetscInt val; 246027c04023SMatthew G. Knepley 24619566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, c, &val)); 246227c04023SMatthew G. Knepley if (val != value) continue; 246327c04023SMatthew G. Knepley } 24649566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, c, &cone)); 246548a46eb9SPierre Jolivet for (p = 0; p < *nFV; ++p) PetscCall(DMLabelSetValue(subpointMap, cone[p], 0)); 2466766ab985SMatthew G. Knepley /* Negative face */ 24679566063dSJacob Faibussowitsch PetscCall(DMPlexGetJoin(dm, *nFV, cone, &numCells, &cells)); 246827234c99SMatthew G. Knepley /* Not true in parallel 246908401ef6SPierre Jolivet PetscCheck(numCells == 2,PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Cohesive cells should separate two cells"); */ 2470766ab985SMatthew G. Knepley for (p = 0; p < numCells; ++p) { 24719566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(subpointMap, cells[p], 2)); 247227234c99SMatthew G. Knepley (*subCells)[subc++] = cells[p]; 2473766ab985SMatthew G. Knepley } 24749566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreJoin(dm, *nFV, cone, &numCells, &cells)); 2475766ab985SMatthew G. Knepley /* Positive face is not included */ 2476766ab985SMatthew G. Knepley } 2477766ab985SMatthew G. Knepley PetscFunctionReturn(0); 2478766ab985SMatthew G. Knepley } 2479766ab985SMatthew G. Knepley 24809371c9d4SSatish Balay static PetscErrorCode DMPlexMarkCohesiveSubmesh_Interpolated(DM dm, DMLabel label, PetscInt value, DMLabel subpointMap, DM subdm) { 2481766ab985SMatthew G. Knepley PetscInt *pStart, *pEnd; 2482766ab985SMatthew G. Knepley PetscInt dim, cMax, cEnd, c, d; 2483766ab985SMatthew G. Knepley 2484812bfc34SJed Brown PetscFunctionBegin; 24859566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 24869566063dSJacob Faibussowitsch PetscCall(DMPlexGetTensorPrismBounds_Internal(dm, dim, &cMax, &cEnd)); 2487766ab985SMatthew G. Knepley if (cMax < 0) PetscFunctionReturn(0); 24889566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(dim + 1, &pStart, dim + 1, &pEnd)); 24899566063dSJacob Faibussowitsch for (d = 0; d <= dim; ++d) PetscCall(DMPlexGetDepthStratum(dm, d, &pStart[d], &pEnd[d])); 2490766ab985SMatthew G. Knepley for (c = cMax; c < cEnd; ++c) { 2491766ab985SMatthew G. Knepley const PetscInt *cone; 2492766ab985SMatthew G. Knepley PetscInt *closure = NULL; 2493b3154360SMatthew G. Knepley PetscInt fconeSize, coneSize, closureSize, cl, val; 2494766ab985SMatthew G. Knepley 249527c04023SMatthew G. Knepley if (label) { 24969566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, c, &val)); 249727c04023SMatthew G. Knepley if (val != value) continue; 249827c04023SMatthew G. Knepley } 24999566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, c, &coneSize)); 25009566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, c, &cone)); 25019566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, cone[0], &fconeSize)); 25021dca8a05SBarry Smith PetscCheck(coneSize == (fconeSize ? fconeSize : 1) + 2, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Cohesive cells should separate two cells"); 2503b3154360SMatthew G. Knepley /* Negative face */ 25049566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(dm, cone[0], PETSC_TRUE, &closureSize, &closure)); 2505766ab985SMatthew G. Knepley for (cl = 0; cl < closureSize * 2; cl += 2) { 2506766ab985SMatthew G. Knepley const PetscInt point = closure[cl]; 2507766ab985SMatthew G. Knepley 2508766ab985SMatthew G. Knepley for (d = 0; d <= dim; ++d) { 2509766ab985SMatthew G. Knepley if ((point >= pStart[d]) && (point < pEnd[d])) { 25109566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(subpointMap, point, d)); 2511766ab985SMatthew G. Knepley break; 2512766ab985SMatthew G. Knepley } 2513766ab985SMatthew G. Knepley } 2514766ab985SMatthew G. Knepley } 25159566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dm, cone[0], PETSC_TRUE, &closureSize, &closure)); 2516766ab985SMatthew G. Knepley /* Cells -- positive face is not included */ 2517766ab985SMatthew G. Knepley for (cl = 0; cl < 1; ++cl) { 2518766ab985SMatthew G. Knepley const PetscInt *support; 2519766ab985SMatthew G. Knepley PetscInt supportSize, s; 2520766ab985SMatthew G. Knepley 25219566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dm, cone[cl], &supportSize)); 252208401ef6SPierre Jolivet /* PetscCheck(supportSize == 2,PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Cohesive faces should separate two cells"); */ 25239566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(dm, cone[cl], &support)); 252448a46eb9SPierre Jolivet for (s = 0; s < supportSize; ++s) PetscCall(DMLabelSetValue(subpointMap, support[s], dim)); 2525766ab985SMatthew G. Knepley } 2526766ab985SMatthew G. Knepley } 25279566063dSJacob Faibussowitsch PetscCall(PetscFree2(pStart, pEnd)); 2528766ab985SMatthew G. Knepley PetscFunctionReturn(0); 2529766ab985SMatthew G. Knepley } 2530766ab985SMatthew G. Knepley 25319371c9d4SSatish Balay static PetscErrorCode DMPlexGetFaceOrientation(DM dm, PetscInt cell, PetscInt numCorners, PetscInt indices[], PetscInt oppositeVertex, PetscInt origVertices[], PetscInt faceVertices[], PetscBool *posOriented) { 253282f516ccSBarry Smith MPI_Comm comm; 2533e6ccafaeSMatthew G Knepley PetscBool posOrient = PETSC_FALSE; 2534e6ccafaeSMatthew G Knepley const PetscInt debug = 0; 2535e6ccafaeSMatthew G Knepley PetscInt cellDim, faceSize, f; 2536e6ccafaeSMatthew G Knepley 253782f516ccSBarry Smith PetscFunctionBegin; 25389566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)dm, &comm)); 25399566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &cellDim)); 254063a3b9bcSJacob Faibussowitsch if (debug) PetscCall(PetscPrintf(comm, "cellDim: %" PetscInt_FMT " numCorners: %" PetscInt_FMT "\n", cellDim, numCorners)); 2541e6ccafaeSMatthew G Knepley 2542ddeab2a6SMatthew G. Knepley if (cellDim == 1 && numCorners == 2) { 2543ddeab2a6SMatthew G. Knepley /* Triangle */ 2544e6ccafaeSMatthew G Knepley faceSize = numCorners - 1; 2545e6ccafaeSMatthew G Knepley posOrient = !(oppositeVertex % 2) ? PETSC_TRUE : PETSC_FALSE; 2546ddeab2a6SMatthew G. Knepley } else if (cellDim == 2 && numCorners == 3) { 2547ddeab2a6SMatthew G. Knepley /* Triangle */ 2548ddeab2a6SMatthew G. Knepley faceSize = numCorners - 1; 2549ddeab2a6SMatthew G. Knepley posOrient = !(oppositeVertex % 2) ? PETSC_TRUE : PETSC_FALSE; 2550ddeab2a6SMatthew G. Knepley } else if (cellDim == 3 && numCorners == 4) { 2551ddeab2a6SMatthew G. Knepley /* Tetrahedron */ 2552ddeab2a6SMatthew G. Knepley faceSize = numCorners - 1; 2553ddeab2a6SMatthew G. Knepley posOrient = (oppositeVertex % 2) ? PETSC_TRUE : PETSC_FALSE; 2554e6ccafaeSMatthew G Knepley } else if (cellDim == 1 && numCorners == 3) { 2555e6ccafaeSMatthew G Knepley /* Quadratic line */ 2556e6ccafaeSMatthew G Knepley faceSize = 1; 2557e6ccafaeSMatthew G Knepley posOrient = PETSC_TRUE; 2558e6ccafaeSMatthew G Knepley } else if (cellDim == 2 && numCorners == 4) { 2559e6ccafaeSMatthew G Knepley /* Quads */ 2560e6ccafaeSMatthew G Knepley faceSize = 2; 2561e6ccafaeSMatthew G Knepley if ((indices[1] > indices[0]) && (indices[1] - indices[0] == 1)) { 2562e6ccafaeSMatthew G Knepley posOrient = PETSC_TRUE; 2563e6ccafaeSMatthew G Knepley } else if ((indices[0] == 3) && (indices[1] == 0)) { 2564e6ccafaeSMatthew G Knepley posOrient = PETSC_TRUE; 2565e6ccafaeSMatthew G Knepley } else { 2566e6ccafaeSMatthew G Knepley if (((indices[0] > indices[1]) && (indices[0] - indices[1] == 1)) || ((indices[0] == 0) && (indices[1] == 3))) { 2567e6ccafaeSMatthew G Knepley posOrient = PETSC_FALSE; 2568e6ccafaeSMatthew G Knepley } else SETERRQ(comm, PETSC_ERR_ARG_WRONG, "Invalid quad crossedge"); 2569e6ccafaeSMatthew G Knepley } 2570e6ccafaeSMatthew G Knepley } else if (cellDim == 2 && numCorners == 6) { 2571e6ccafaeSMatthew G Knepley /* Quadratic triangle (I hate this) */ 2572e6ccafaeSMatthew G Knepley /* Edges are determined by the first 2 vertices (corners of edges) */ 2573e6ccafaeSMatthew G Knepley const PetscInt faceSizeTri = 3; 2574e6ccafaeSMatthew G Knepley PetscInt sortedIndices[3], i, iFace; 2575e6ccafaeSMatthew G Knepley PetscBool found = PETSC_FALSE; 2576e6ccafaeSMatthew G Knepley PetscInt faceVerticesTriSorted[9] = { 2577e6ccafaeSMatthew G Knepley 0, 3, 4, /* bottom */ 2578e6ccafaeSMatthew G Knepley 1, 4, 5, /* right */ 2579e6ccafaeSMatthew G Knepley 2, 3, 5, /* left */ 2580e6ccafaeSMatthew G Knepley }; 2581e6ccafaeSMatthew G Knepley PetscInt faceVerticesTri[9] = { 2582e6ccafaeSMatthew G Knepley 0, 3, 4, /* bottom */ 2583e6ccafaeSMatthew G Knepley 1, 4, 5, /* right */ 2584e6ccafaeSMatthew G Knepley 2, 5, 3, /* left */ 2585e6ccafaeSMatthew G Knepley }; 2586e6ccafaeSMatthew G Knepley 2587e6ccafaeSMatthew G Knepley for (i = 0; i < faceSizeTri; ++i) sortedIndices[i] = indices[i]; 25889566063dSJacob Faibussowitsch PetscCall(PetscSortInt(faceSizeTri, sortedIndices)); 2589e6ccafaeSMatthew G Knepley for (iFace = 0; iFace < 3; ++iFace) { 2590e6ccafaeSMatthew G Knepley const PetscInt ii = iFace * faceSizeTri; 2591e6ccafaeSMatthew G Knepley PetscInt fVertex, cVertex; 2592e6ccafaeSMatthew G Knepley 25939371c9d4SSatish Balay if ((sortedIndices[0] == faceVerticesTriSorted[ii + 0]) && (sortedIndices[1] == faceVerticesTriSorted[ii + 1])) { 2594e6ccafaeSMatthew G Knepley for (fVertex = 0; fVertex < faceSizeTri; ++fVertex) { 2595e6ccafaeSMatthew G Knepley for (cVertex = 0; cVertex < faceSizeTri; ++cVertex) { 2596e6ccafaeSMatthew G Knepley if (indices[cVertex] == faceVerticesTri[ii + fVertex]) { 2597e6ccafaeSMatthew G Knepley faceVertices[fVertex] = origVertices[cVertex]; 2598e6ccafaeSMatthew G Knepley break; 2599e6ccafaeSMatthew G Knepley } 2600e6ccafaeSMatthew G Knepley } 2601e6ccafaeSMatthew G Knepley } 2602e6ccafaeSMatthew G Knepley found = PETSC_TRUE; 2603e6ccafaeSMatthew G Knepley break; 2604e6ccafaeSMatthew G Knepley } 2605e6ccafaeSMatthew G Knepley } 260628b400f6SJacob Faibussowitsch PetscCheck(found, comm, PETSC_ERR_ARG_WRONG, "Invalid tri crossface"); 2607e6ccafaeSMatthew G Knepley if (posOriented) *posOriented = PETSC_TRUE; 2608e6ccafaeSMatthew G Knepley PetscFunctionReturn(0); 2609e6ccafaeSMatthew G Knepley } else if (cellDim == 2 && numCorners == 9) { 2610e6ccafaeSMatthew G Knepley /* Quadratic quad (I hate this) */ 2611e6ccafaeSMatthew G Knepley /* Edges are determined by the first 2 vertices (corners of edges) */ 2612e6ccafaeSMatthew G Knepley const PetscInt faceSizeQuad = 3; 2613e6ccafaeSMatthew G Knepley PetscInt sortedIndices[3], i, iFace; 2614e6ccafaeSMatthew G Knepley PetscBool found = PETSC_FALSE; 2615e6ccafaeSMatthew G Knepley PetscInt faceVerticesQuadSorted[12] = { 2616e6ccafaeSMatthew G Knepley 0, 1, 4, /* bottom */ 2617e6ccafaeSMatthew G Knepley 1, 2, 5, /* right */ 2618e6ccafaeSMatthew G Knepley 2, 3, 6, /* top */ 2619e6ccafaeSMatthew G Knepley 0, 3, 7, /* left */ 2620e6ccafaeSMatthew G Knepley }; 2621e6ccafaeSMatthew G Knepley PetscInt faceVerticesQuad[12] = { 2622e6ccafaeSMatthew G Knepley 0, 1, 4, /* bottom */ 2623e6ccafaeSMatthew G Knepley 1, 2, 5, /* right */ 2624e6ccafaeSMatthew G Knepley 2, 3, 6, /* top */ 2625e6ccafaeSMatthew G Knepley 3, 0, 7, /* left */ 2626e6ccafaeSMatthew G Knepley }; 2627e6ccafaeSMatthew G Knepley 2628e6ccafaeSMatthew G Knepley for (i = 0; i < faceSizeQuad; ++i) sortedIndices[i] = indices[i]; 26299566063dSJacob Faibussowitsch PetscCall(PetscSortInt(faceSizeQuad, sortedIndices)); 2630e6ccafaeSMatthew G Knepley for (iFace = 0; iFace < 4; ++iFace) { 2631e6ccafaeSMatthew G Knepley const PetscInt ii = iFace * faceSizeQuad; 2632e6ccafaeSMatthew G Knepley PetscInt fVertex, cVertex; 2633e6ccafaeSMatthew G Knepley 26349371c9d4SSatish Balay if ((sortedIndices[0] == faceVerticesQuadSorted[ii + 0]) && (sortedIndices[1] == faceVerticesQuadSorted[ii + 1])) { 2635e6ccafaeSMatthew G Knepley for (fVertex = 0; fVertex < faceSizeQuad; ++fVertex) { 2636e6ccafaeSMatthew G Knepley for (cVertex = 0; cVertex < faceSizeQuad; ++cVertex) { 2637e6ccafaeSMatthew G Knepley if (indices[cVertex] == faceVerticesQuad[ii + fVertex]) { 2638e6ccafaeSMatthew G Knepley faceVertices[fVertex] = origVertices[cVertex]; 2639e6ccafaeSMatthew G Knepley break; 2640e6ccafaeSMatthew G Knepley } 2641e6ccafaeSMatthew G Knepley } 2642e6ccafaeSMatthew G Knepley } 2643e6ccafaeSMatthew G Knepley found = PETSC_TRUE; 2644e6ccafaeSMatthew G Knepley break; 2645e6ccafaeSMatthew G Knepley } 2646e6ccafaeSMatthew G Knepley } 264728b400f6SJacob Faibussowitsch PetscCheck(found, comm, PETSC_ERR_ARG_WRONG, "Invalid quad crossface"); 2648e6ccafaeSMatthew G Knepley if (posOriented) *posOriented = PETSC_TRUE; 2649e6ccafaeSMatthew G Knepley PetscFunctionReturn(0); 2650e6ccafaeSMatthew G Knepley } else if (cellDim == 3 && numCorners == 8) { 2651e6ccafaeSMatthew G Knepley /* Hexes 2652e6ccafaeSMatthew G Knepley A hex is two oriented quads with the normal of the first 2653e6ccafaeSMatthew G Knepley pointing up at the second. 2654e6ccafaeSMatthew G Knepley 2655e6ccafaeSMatthew G Knepley 7---6 2656e6ccafaeSMatthew G Knepley /| /| 2657e6ccafaeSMatthew G Knepley 4---5 | 2658ddeab2a6SMatthew G. Knepley | 1-|-2 2659e6ccafaeSMatthew G Knepley |/ |/ 2660ddeab2a6SMatthew G. Knepley 0---3 2661e6ccafaeSMatthew G Knepley 2662e6ccafaeSMatthew G Knepley Faces are determined by the first 4 vertices (corners of faces) */ 2663e6ccafaeSMatthew G Knepley const PetscInt faceSizeHex = 4; 2664e6ccafaeSMatthew G Knepley PetscInt sortedIndices[4], i, iFace; 2665e6ccafaeSMatthew G Knepley PetscBool found = PETSC_FALSE; 2666e6ccafaeSMatthew G Knepley PetscInt faceVerticesHexSorted[24] = { 2667e6ccafaeSMatthew G Knepley 0, 1, 2, 3, /* bottom */ 2668e6ccafaeSMatthew G Knepley 4, 5, 6, 7, /* top */ 2669ddeab2a6SMatthew G. Knepley 0, 3, 4, 5, /* front */ 2670ddeab2a6SMatthew G. Knepley 2, 3, 5, 6, /* right */ 2671ddeab2a6SMatthew G. Knepley 1, 2, 6, 7, /* back */ 2672ddeab2a6SMatthew G. Knepley 0, 1, 4, 7, /* left */ 2673e6ccafaeSMatthew G Knepley }; 2674e6ccafaeSMatthew G Knepley PetscInt faceVerticesHex[24] = { 2675ddeab2a6SMatthew G. Knepley 1, 2, 3, 0, /* bottom */ 2676e6ccafaeSMatthew G Knepley 4, 5, 6, 7, /* top */ 2677ddeab2a6SMatthew G. Knepley 0, 3, 5, 4, /* front */ 2678ddeab2a6SMatthew G. Knepley 3, 2, 6, 5, /* right */ 2679ddeab2a6SMatthew G. Knepley 2, 1, 7, 6, /* back */ 2680ddeab2a6SMatthew G. Knepley 1, 0, 4, 7, /* left */ 2681e6ccafaeSMatthew G Knepley }; 2682e6ccafaeSMatthew G Knepley 2683e6ccafaeSMatthew G Knepley for (i = 0; i < faceSizeHex; ++i) sortedIndices[i] = indices[i]; 26849566063dSJacob Faibussowitsch PetscCall(PetscSortInt(faceSizeHex, sortedIndices)); 2685e6ccafaeSMatthew G Knepley for (iFace = 0; iFace < 6; ++iFace) { 2686e6ccafaeSMatthew G Knepley const PetscInt ii = iFace * faceSizeHex; 2687e6ccafaeSMatthew G Knepley PetscInt fVertex, cVertex; 2688e6ccafaeSMatthew G Knepley 26899371c9d4SSatish Balay if ((sortedIndices[0] == faceVerticesHexSorted[ii + 0]) && (sortedIndices[1] == faceVerticesHexSorted[ii + 1]) && (sortedIndices[2] == faceVerticesHexSorted[ii + 2]) && (sortedIndices[3] == faceVerticesHexSorted[ii + 3])) { 2690e6ccafaeSMatthew G Knepley for (fVertex = 0; fVertex < faceSizeHex; ++fVertex) { 2691e6ccafaeSMatthew G Knepley for (cVertex = 0; cVertex < faceSizeHex; ++cVertex) { 2692e6ccafaeSMatthew G Knepley if (indices[cVertex] == faceVerticesHex[ii + fVertex]) { 2693e6ccafaeSMatthew G Knepley faceVertices[fVertex] = origVertices[cVertex]; 2694e6ccafaeSMatthew G Knepley break; 2695e6ccafaeSMatthew G Knepley } 2696e6ccafaeSMatthew G Knepley } 2697e6ccafaeSMatthew G Knepley } 2698e6ccafaeSMatthew G Knepley found = PETSC_TRUE; 2699e6ccafaeSMatthew G Knepley break; 2700e6ccafaeSMatthew G Knepley } 2701e6ccafaeSMatthew G Knepley } 270228b400f6SJacob Faibussowitsch PetscCheck(found, comm, PETSC_ERR_ARG_WRONG, "Invalid hex crossface"); 2703e6ccafaeSMatthew G Knepley if (posOriented) *posOriented = PETSC_TRUE; 2704e6ccafaeSMatthew G Knepley PetscFunctionReturn(0); 2705e6ccafaeSMatthew G Knepley } else if (cellDim == 3 && numCorners == 10) { 2706e6ccafaeSMatthew G Knepley /* Quadratic tet */ 2707e6ccafaeSMatthew G Knepley /* Faces are determined by the first 3 vertices (corners of faces) */ 2708e6ccafaeSMatthew G Knepley const PetscInt faceSizeTet = 6; 2709e6ccafaeSMatthew G Knepley PetscInt sortedIndices[6], i, iFace; 2710e6ccafaeSMatthew G Knepley PetscBool found = PETSC_FALSE; 2711e6ccafaeSMatthew G Knepley PetscInt faceVerticesTetSorted[24] = { 2712e6ccafaeSMatthew G Knepley 0, 1, 2, 6, 7, 8, /* bottom */ 2713e6ccafaeSMatthew G Knepley 0, 3, 4, 6, 7, 9, /* front */ 2714e6ccafaeSMatthew G Knepley 1, 4, 5, 7, 8, 9, /* right */ 2715e6ccafaeSMatthew G Knepley 2, 3, 5, 6, 8, 9, /* left */ 2716e6ccafaeSMatthew G Knepley }; 2717e6ccafaeSMatthew G Knepley PetscInt faceVerticesTet[24] = { 2718e6ccafaeSMatthew G Knepley 0, 1, 2, 6, 7, 8, /* bottom */ 2719e6ccafaeSMatthew G Knepley 0, 4, 3, 6, 7, 9, /* front */ 2720e6ccafaeSMatthew G Knepley 1, 5, 4, 7, 8, 9, /* right */ 2721e6ccafaeSMatthew G Knepley 2, 3, 5, 8, 6, 9, /* left */ 2722e6ccafaeSMatthew G Knepley }; 2723e6ccafaeSMatthew G Knepley 2724e6ccafaeSMatthew G Knepley for (i = 0; i < faceSizeTet; ++i) sortedIndices[i] = indices[i]; 27259566063dSJacob Faibussowitsch PetscCall(PetscSortInt(faceSizeTet, sortedIndices)); 2726e6ccafaeSMatthew G Knepley for (iFace = 0; iFace < 4; ++iFace) { 2727e6ccafaeSMatthew G Knepley const PetscInt ii = iFace * faceSizeTet; 2728e6ccafaeSMatthew G Knepley PetscInt fVertex, cVertex; 2729e6ccafaeSMatthew G Knepley 27309371c9d4SSatish Balay if ((sortedIndices[0] == faceVerticesTetSorted[ii + 0]) && (sortedIndices[1] == faceVerticesTetSorted[ii + 1]) && (sortedIndices[2] == faceVerticesTetSorted[ii + 2]) && (sortedIndices[3] == faceVerticesTetSorted[ii + 3])) { 2731e6ccafaeSMatthew G Knepley for (fVertex = 0; fVertex < faceSizeTet; ++fVertex) { 2732e6ccafaeSMatthew G Knepley for (cVertex = 0; cVertex < faceSizeTet; ++cVertex) { 2733e6ccafaeSMatthew G Knepley if (indices[cVertex] == faceVerticesTet[ii + fVertex]) { 2734e6ccafaeSMatthew G Knepley faceVertices[fVertex] = origVertices[cVertex]; 2735e6ccafaeSMatthew G Knepley break; 2736e6ccafaeSMatthew G Knepley } 2737e6ccafaeSMatthew G Knepley } 2738e6ccafaeSMatthew G Knepley } 2739e6ccafaeSMatthew G Knepley found = PETSC_TRUE; 2740e6ccafaeSMatthew G Knepley break; 2741e6ccafaeSMatthew G Knepley } 2742e6ccafaeSMatthew G Knepley } 274328b400f6SJacob Faibussowitsch PetscCheck(found, comm, PETSC_ERR_ARG_WRONG, "Invalid tet crossface"); 2744e6ccafaeSMatthew G Knepley if (posOriented) *posOriented = PETSC_TRUE; 2745e6ccafaeSMatthew G Knepley PetscFunctionReturn(0); 2746e6ccafaeSMatthew G Knepley } else if (cellDim == 3 && numCorners == 27) { 2747e6ccafaeSMatthew G Knepley /* Quadratic hexes (I hate this) 2748e6ccafaeSMatthew G Knepley A hex is two oriented quads with the normal of the first 2749e6ccafaeSMatthew G Knepley pointing up at the second. 2750e6ccafaeSMatthew G Knepley 2751e6ccafaeSMatthew G Knepley 7---6 2752e6ccafaeSMatthew G Knepley /| /| 2753e6ccafaeSMatthew G Knepley 4---5 | 2754e6ccafaeSMatthew G Knepley | 3-|-2 2755e6ccafaeSMatthew G Knepley |/ |/ 2756e6ccafaeSMatthew G Knepley 0---1 2757e6ccafaeSMatthew G Knepley 2758e6ccafaeSMatthew G Knepley Faces are determined by the first 4 vertices (corners of faces) */ 2759e6ccafaeSMatthew G Knepley const PetscInt faceSizeQuadHex = 9; 2760e6ccafaeSMatthew G Knepley PetscInt sortedIndices[9], i, iFace; 2761e6ccafaeSMatthew G Knepley PetscBool found = PETSC_FALSE; 2762e6ccafaeSMatthew G Knepley PetscInt faceVerticesQuadHexSorted[54] = { 2763e6ccafaeSMatthew G Knepley 0, 1, 2, 3, 8, 9, 10, 11, 24, /* bottom */ 2764e6ccafaeSMatthew G Knepley 4, 5, 6, 7, 12, 13, 14, 15, 25, /* top */ 2765e6ccafaeSMatthew G Knepley 0, 1, 4, 5, 8, 12, 16, 17, 22, /* front */ 2766e6ccafaeSMatthew G Knepley 1, 2, 5, 6, 9, 13, 17, 18, 21, /* right */ 2767e6ccafaeSMatthew G Knepley 2, 3, 6, 7, 10, 14, 18, 19, 23, /* back */ 2768e6ccafaeSMatthew G Knepley 0, 3, 4, 7, 11, 15, 16, 19, 20, /* left */ 2769e6ccafaeSMatthew G Knepley }; 2770e6ccafaeSMatthew G Knepley PetscInt faceVerticesQuadHex[54] = { 2771e6ccafaeSMatthew G Knepley 3, 2, 1, 0, 10, 9, 8, 11, 24, /* bottom */ 2772e6ccafaeSMatthew G Knepley 4, 5, 6, 7, 12, 13, 14, 15, 25, /* top */ 2773e6ccafaeSMatthew G Knepley 0, 1, 5, 4, 8, 17, 12, 16, 22, /* front */ 2774e6ccafaeSMatthew G Knepley 1, 2, 6, 5, 9, 18, 13, 17, 21, /* right */ 2775e6ccafaeSMatthew G Knepley 2, 3, 7, 6, 10, 19, 14, 18, 23, /* back */ 2776e6ccafaeSMatthew G Knepley 3, 0, 4, 7, 11, 16, 15, 19, 20 /* left */ 2777e6ccafaeSMatthew G Knepley }; 2778e6ccafaeSMatthew G Knepley 2779e6ccafaeSMatthew G Knepley for (i = 0; i < faceSizeQuadHex; ++i) sortedIndices[i] = indices[i]; 27809566063dSJacob Faibussowitsch PetscCall(PetscSortInt(faceSizeQuadHex, sortedIndices)); 2781e6ccafaeSMatthew G Knepley for (iFace = 0; iFace < 6; ++iFace) { 2782e6ccafaeSMatthew G Knepley const PetscInt ii = iFace * faceSizeQuadHex; 2783e6ccafaeSMatthew G Knepley PetscInt fVertex, cVertex; 2784e6ccafaeSMatthew G Knepley 27859371c9d4SSatish Balay if ((sortedIndices[0] == faceVerticesQuadHexSorted[ii + 0]) && (sortedIndices[1] == faceVerticesQuadHexSorted[ii + 1]) && (sortedIndices[2] == faceVerticesQuadHexSorted[ii + 2]) && (sortedIndices[3] == faceVerticesQuadHexSorted[ii + 3])) { 2786e6ccafaeSMatthew G Knepley for (fVertex = 0; fVertex < faceSizeQuadHex; ++fVertex) { 2787e6ccafaeSMatthew G Knepley for (cVertex = 0; cVertex < faceSizeQuadHex; ++cVertex) { 2788e6ccafaeSMatthew G Knepley if (indices[cVertex] == faceVerticesQuadHex[ii + fVertex]) { 2789e6ccafaeSMatthew G Knepley faceVertices[fVertex] = origVertices[cVertex]; 2790e6ccafaeSMatthew G Knepley break; 2791e6ccafaeSMatthew G Knepley } 2792e6ccafaeSMatthew G Knepley } 2793e6ccafaeSMatthew G Knepley } 2794e6ccafaeSMatthew G Knepley found = PETSC_TRUE; 2795e6ccafaeSMatthew G Knepley break; 2796e6ccafaeSMatthew G Knepley } 2797e6ccafaeSMatthew G Knepley } 279828b400f6SJacob Faibussowitsch PetscCheck(found, comm, PETSC_ERR_ARG_WRONG, "Invalid hex crossface"); 2799e6ccafaeSMatthew G Knepley if (posOriented) *posOriented = PETSC_TRUE; 2800e6ccafaeSMatthew G Knepley PetscFunctionReturn(0); 2801e6ccafaeSMatthew G Knepley } else SETERRQ(comm, PETSC_ERR_ARG_WRONG, "Unknown cell type for faceOrientation()."); 2802e6ccafaeSMatthew G Knepley if (!posOrient) { 28039566063dSJacob Faibussowitsch if (debug) PetscCall(PetscPrintf(comm, " Reversing initial face orientation\n")); 2804e6ccafaeSMatthew G Knepley for (f = 0; f < faceSize; ++f) faceVertices[f] = origVertices[faceSize - 1 - f]; 2805e6ccafaeSMatthew G Knepley } else { 28069566063dSJacob Faibussowitsch if (debug) PetscCall(PetscPrintf(comm, " Keeping initial face orientation\n")); 2807e6ccafaeSMatthew G Knepley for (f = 0; f < faceSize; ++f) faceVertices[f] = origVertices[f]; 2808e6ccafaeSMatthew G Knepley } 2809e6ccafaeSMatthew G Knepley if (posOriented) *posOriented = posOrient; 2810e6ccafaeSMatthew G Knepley PetscFunctionReturn(0); 2811e6ccafaeSMatthew G Knepley } 2812e6ccafaeSMatthew G Knepley 2813c08575a3SMatthew G. Knepley /*@ 2814c08575a3SMatthew G. Knepley DMPlexGetOrientedFace - Given a cell and a face, as a set of vertices, return the oriented face, as a set of vertices, 2815c08575a3SMatthew G. Knepley in faceVertices. The orientation is such that the face normal points out of the cell 2816c08575a3SMatthew G. Knepley 2817c08575a3SMatthew G. Knepley Not collective 2818c08575a3SMatthew G. Knepley 2819c08575a3SMatthew G. Knepley Input Parameters: 2820c08575a3SMatthew G. Knepley + dm - The original mesh 2821c08575a3SMatthew G. Knepley . cell - The cell mesh point 2822c08575a3SMatthew G. Knepley . faceSize - The number of vertices on the face 2823c08575a3SMatthew G. Knepley . face - The face vertices 2824c08575a3SMatthew G. Knepley . numCorners - The number of vertices on the cell 2825c08575a3SMatthew G. Knepley . indices - Local numbering of face vertices in cell cone 2826c08575a3SMatthew G. Knepley - origVertices - Original face vertices 2827c08575a3SMatthew G. Knepley 2828d8d19677SJose E. Roman Output Parameters: 2829c08575a3SMatthew G. Knepley + faceVertices - The face vertices properly oriented 2830c08575a3SMatthew G. Knepley - posOriented - PETSC_TRUE if the face was oriented with outward normal 2831c08575a3SMatthew G. Knepley 2832c08575a3SMatthew G. Knepley Level: developer 2833c08575a3SMatthew G. Knepley 2834db781477SPatrick Sanan .seealso: `DMPlexGetCone()` 2835c08575a3SMatthew G. Knepley @*/ 28369371c9d4SSatish Balay PetscErrorCode DMPlexGetOrientedFace(DM dm, PetscInt cell, PetscInt faceSize, const PetscInt face[], PetscInt numCorners, PetscInt indices[], PetscInt origVertices[], PetscInt faceVertices[], PetscBool *posOriented) { 28370298fd71SBarry Smith const PetscInt *cone = NULL; 2838e6ccafaeSMatthew G Knepley PetscInt coneSize, v, f, v2; 2839e6ccafaeSMatthew G Knepley PetscInt oppositeVertex = -1; 2840e6ccafaeSMatthew G Knepley 2841e6ccafaeSMatthew G Knepley PetscFunctionBegin; 28429566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, cell, &coneSize)); 28439566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, cell, &cone)); 2844e6ccafaeSMatthew G Knepley for (v = 0, v2 = 0; v < coneSize; ++v) { 2845e6ccafaeSMatthew G Knepley PetscBool found = PETSC_FALSE; 2846e6ccafaeSMatthew G Knepley 2847e6ccafaeSMatthew G Knepley for (f = 0; f < faceSize; ++f) { 2848e6ccafaeSMatthew G Knepley if (face[f] == cone[v]) { 28499371c9d4SSatish Balay found = PETSC_TRUE; 28509371c9d4SSatish Balay break; 2851e6ccafaeSMatthew G Knepley } 2852e6ccafaeSMatthew G Knepley } 2853e6ccafaeSMatthew G Knepley if (found) { 2854e6ccafaeSMatthew G Knepley indices[v2] = v; 2855e6ccafaeSMatthew G Knepley origVertices[v2] = cone[v]; 2856e6ccafaeSMatthew G Knepley ++v2; 2857e6ccafaeSMatthew G Knepley } else { 2858e6ccafaeSMatthew G Knepley oppositeVertex = v; 2859e6ccafaeSMatthew G Knepley } 2860e6ccafaeSMatthew G Knepley } 28619566063dSJacob Faibussowitsch PetscCall(DMPlexGetFaceOrientation(dm, cell, numCorners, indices, oppositeVertex, origVertices, faceVertices, posOriented)); 2862e6ccafaeSMatthew G Knepley PetscFunctionReturn(0); 2863e6ccafaeSMatthew G Knepley } 2864e6ccafaeSMatthew G Knepley 2865e6ccafaeSMatthew G Knepley /* 2866cd0c2139SMatthew G Knepley DMPlexInsertFace_Internal - Puts a face into the mesh 2867e6ccafaeSMatthew G Knepley 2868e6ccafaeSMatthew G Knepley Not collective 2869e6ccafaeSMatthew G Knepley 2870e6ccafaeSMatthew G Knepley Input Parameters: 2871e6ccafaeSMatthew G Knepley + dm - The DMPlex 2872e6ccafaeSMatthew G Knepley . numFaceVertex - The number of vertices in the face 2873e6ccafaeSMatthew G Knepley . faceVertices - The vertices in the face for dm 2874e6ccafaeSMatthew G Knepley . subfaceVertices - The vertices in the face for subdm 2875e6ccafaeSMatthew G Knepley . numCorners - The number of vertices in the cell 2876e6ccafaeSMatthew G Knepley . cell - A cell in dm containing the face 2877e6ccafaeSMatthew G Knepley . subcell - A cell in subdm containing the face 2878e6ccafaeSMatthew G Knepley . firstFace - First face in the mesh 2879e6ccafaeSMatthew G Knepley - newFacePoint - Next face in the mesh 2880e6ccafaeSMatthew G Knepley 2881e6ccafaeSMatthew G Knepley Output Parameters: 2882e6ccafaeSMatthew G Knepley . newFacePoint - Contains next face point number on input, updated on output 2883e6ccafaeSMatthew G Knepley 2884e6ccafaeSMatthew G Knepley Level: developer 2885e6ccafaeSMatthew G Knepley */ 28869371c9d4SSatish Balay static PetscErrorCode DMPlexInsertFace_Internal(DM dm, DM subdm, PetscInt numFaceVertices, const PetscInt faceVertices[], const PetscInt subfaceVertices[], PetscInt numCorners, PetscInt cell, PetscInt subcell, PetscInt firstFace, PetscInt *newFacePoint) { 288782f516ccSBarry Smith MPI_Comm comm; 2888e6ccafaeSMatthew G Knepley DM_Plex *submesh = (DM_Plex *)subdm->data; 2889e6ccafaeSMatthew G Knepley const PetscInt *faces; 2890e6ccafaeSMatthew G Knepley PetscInt numFaces, coneSize; 2891e6ccafaeSMatthew G Knepley 2892e6ccafaeSMatthew G Knepley PetscFunctionBegin; 28939566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)dm, &comm)); 28949566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(subdm, subcell, &coneSize)); 289563a3b9bcSJacob Faibussowitsch PetscCheck(coneSize == 1, comm, PETSC_ERR_ARG_OUTOFRANGE, "Cone size of cell %" PetscInt_FMT " is %" PetscInt_FMT " != 1", cell, coneSize); 2896e6ccafaeSMatthew G Knepley #if 0 2897e6ccafaeSMatthew G Knepley /* Cannot use this because support() has not been constructed yet */ 28989566063dSJacob Faibussowitsch PetscCall(DMPlexGetJoin(subdm, numFaceVertices, subfaceVertices, &numFaces, &faces)); 2899e6ccafaeSMatthew G Knepley #else 2900e6ccafaeSMatthew G Knepley { 2901e6ccafaeSMatthew G Knepley PetscInt f; 2902e6ccafaeSMatthew G Knepley 2903e6ccafaeSMatthew G Knepley numFaces = 0; 29049566063dSJacob Faibussowitsch PetscCall(DMGetWorkArray(subdm, 1, MPIU_INT, (void **)&faces)); 2905e6ccafaeSMatthew G Knepley for (f = firstFace; f < *newFacePoint; ++f) { 2906e6ccafaeSMatthew G Knepley PetscInt dof, off, d; 2907e6ccafaeSMatthew G Knepley 29089566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(submesh->coneSection, f, &dof)); 29099566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(submesh->coneSection, f, &off)); 2910e6ccafaeSMatthew G Knepley /* Yes, I know this is quadratic, but I expect the sizes to be <5 */ 2911e6ccafaeSMatthew G Knepley for (d = 0; d < dof; ++d) { 2912e6ccafaeSMatthew G Knepley const PetscInt p = submesh->cones[off + d]; 2913e6ccafaeSMatthew G Knepley PetscInt v; 2914e6ccafaeSMatthew G Knepley 2915e6ccafaeSMatthew G Knepley for (v = 0; v < numFaceVertices; ++v) { 2916e6ccafaeSMatthew G Knepley if (subfaceVertices[v] == p) break; 2917e6ccafaeSMatthew G Knepley } 2918e6ccafaeSMatthew G Knepley if (v == numFaceVertices) break; 2919e6ccafaeSMatthew G Knepley } 2920e6ccafaeSMatthew G Knepley if (d == dof) { 2921e6ccafaeSMatthew G Knepley numFaces = 1; 2922e6ccafaeSMatthew G Knepley ((PetscInt *)faces)[0] = f; 2923e6ccafaeSMatthew G Knepley } 2924e6ccafaeSMatthew G Knepley } 2925e6ccafaeSMatthew G Knepley } 2926e6ccafaeSMatthew G Knepley #endif 292763a3b9bcSJacob Faibussowitsch PetscCheck(numFaces <= 1, comm, PETSC_ERR_ARG_WRONG, "Vertex set had %" PetscInt_FMT " faces, not one", numFaces); 2928f7d195e4SLawrence Mitchell if (numFaces == 1) { 2929e6ccafaeSMatthew G Knepley /* Add the other cell neighbor for this face */ 29309566063dSJacob Faibussowitsch PetscCall(DMPlexSetCone(subdm, subcell, faces)); 2931e6ccafaeSMatthew G Knepley } else { 2932e6ccafaeSMatthew G Knepley PetscInt *indices, *origVertices, *orientedVertices, *orientedSubVertices, v, ov; 2933e6ccafaeSMatthew G Knepley PetscBool posOriented; 2934e6ccafaeSMatthew G Knepley 29359566063dSJacob Faibussowitsch PetscCall(DMGetWorkArray(subdm, 4 * numFaceVertices * sizeof(PetscInt), MPIU_INT, &orientedVertices)); 2936e6ccafaeSMatthew G Knepley origVertices = &orientedVertices[numFaceVertices]; 2937e6ccafaeSMatthew G Knepley indices = &orientedVertices[numFaceVertices * 2]; 2938e6ccafaeSMatthew G Knepley orientedSubVertices = &orientedVertices[numFaceVertices * 3]; 29399566063dSJacob Faibussowitsch PetscCall(DMPlexGetOrientedFace(dm, cell, numFaceVertices, faceVertices, numCorners, indices, origVertices, orientedVertices, &posOriented)); 2940e6ccafaeSMatthew G Knepley /* TODO: I know that routine should return a permutation, not the indices */ 2941e6ccafaeSMatthew G Knepley for (v = 0; v < numFaceVertices; ++v) { 2942e6ccafaeSMatthew G Knepley const PetscInt vertex = faceVertices[v], subvertex = subfaceVertices[v]; 2943e6ccafaeSMatthew G Knepley for (ov = 0; ov < numFaceVertices; ++ov) { 2944e6ccafaeSMatthew G Knepley if (orientedVertices[ov] == vertex) { 2945e6ccafaeSMatthew G Knepley orientedSubVertices[ov] = subvertex; 2946e6ccafaeSMatthew G Knepley break; 2947e6ccafaeSMatthew G Knepley } 2948e6ccafaeSMatthew G Knepley } 294963a3b9bcSJacob Faibussowitsch PetscCheck(ov != numFaceVertices, comm, PETSC_ERR_PLIB, "Could not find face vertex %" PetscInt_FMT " in orientated set", vertex); 2950e6ccafaeSMatthew G Knepley } 29519566063dSJacob Faibussowitsch PetscCall(DMPlexSetCone(subdm, *newFacePoint, orientedSubVertices)); 29529566063dSJacob Faibussowitsch PetscCall(DMPlexSetCone(subdm, subcell, newFacePoint)); 29539566063dSJacob Faibussowitsch PetscCall(DMRestoreWorkArray(subdm, 4 * numFaceVertices * sizeof(PetscInt), MPIU_INT, &orientedVertices)); 2954e6ccafaeSMatthew G Knepley ++(*newFacePoint); 2955e6ccafaeSMatthew G Knepley } 2956ef07cca7SMatthew G. Knepley #if 0 29579566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreJoin(subdm, numFaceVertices, subfaceVertices, &numFaces, &faces)); 2958ef07cca7SMatthew G. Knepley #else 29599566063dSJacob Faibussowitsch PetscCall(DMRestoreWorkArray(subdm, 1, MPIU_INT, (void **)&faces)); 2960ef07cca7SMatthew G. Knepley #endif 2961e6ccafaeSMatthew G Knepley PetscFunctionReturn(0); 2962e6ccafaeSMatthew G Knepley } 2963e6ccafaeSMatthew G Knepley 29649371c9d4SSatish Balay static PetscErrorCode DMPlexCreateSubmesh_Uninterpolated(DM dm, DMLabel vertexLabel, PetscInt value, DM subdm) { 296582f516ccSBarry Smith MPI_Comm comm; 296653156dfcSMatthew G. Knepley DMLabel subpointMap; 2967efa14ee0SMatthew G Knepley IS subvertexIS, subcellIS; 2968efa14ee0SMatthew G Knepley const PetscInt *subVertices, *subCells; 2969efa14ee0SMatthew G Knepley PetscInt numSubVertices, firstSubVertex, numSubCells; 2970fed694aaSMatthew G. Knepley PetscInt *subface, maxConeSize, numSubFaces = 0, firstSubFace, newFacePoint, nFV = 0; 2971efa14ee0SMatthew G Knepley PetscInt vStart, vEnd, c, f; 2972e6ccafaeSMatthew G Knepley 2973e6ccafaeSMatthew G Knepley PetscFunctionBegin; 29749566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)dm, &comm)); 2975efa14ee0SMatthew G Knepley /* Create subpointMap which marks the submesh */ 29769566063dSJacob Faibussowitsch PetscCall(DMLabelCreate(PETSC_COMM_SELF, "subpoint_map", &subpointMap)); 29779566063dSJacob Faibussowitsch PetscCall(DMPlexSetSubpointMap(subdm, subpointMap)); 29789566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&subpointMap)); 29799566063dSJacob Faibussowitsch if (vertexLabel) PetscCall(DMPlexMarkSubmesh_Uninterpolated(dm, vertexLabel, value, subpointMap, &numSubFaces, &nFV, subdm)); 2980efa14ee0SMatthew G Knepley /* Setup chart */ 29819566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumSize(subpointMap, 0, &numSubVertices)); 29829566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumSize(subpointMap, 2, &numSubCells)); 29839566063dSJacob Faibussowitsch PetscCall(DMPlexSetChart(subdm, 0, numSubCells + numSubFaces + numSubVertices)); 29849566063dSJacob Faibussowitsch PetscCall(DMPlexSetVTKCellHeight(subdm, 1)); 2985e6ccafaeSMatthew G Knepley /* Set cone sizes */ 2986e6ccafaeSMatthew G Knepley firstSubVertex = numSubCells; 2987efa14ee0SMatthew G Knepley firstSubFace = numSubCells + numSubVertices; 2988e6ccafaeSMatthew G Knepley newFacePoint = firstSubFace; 29899566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(subpointMap, 0, &subvertexIS)); 29909566063dSJacob Faibussowitsch if (subvertexIS) PetscCall(ISGetIndices(subvertexIS, &subVertices)); 29919566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(subpointMap, 2, &subcellIS)); 29929566063dSJacob Faibussowitsch if (subcellIS) PetscCall(ISGetIndices(subcellIS, &subCells)); 299348a46eb9SPierre Jolivet for (c = 0; c < numSubCells; ++c) PetscCall(DMPlexSetConeSize(subdm, c, 1)); 299448a46eb9SPierre Jolivet for (f = firstSubFace; f < firstSubFace + numSubFaces; ++f) PetscCall(DMPlexSetConeSize(subdm, f, nFV)); 29959566063dSJacob Faibussowitsch PetscCall(DMSetUp(subdm)); 2996e6ccafaeSMatthew G Knepley /* Create face cones */ 29979566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthStratum(dm, 0, &vStart, &vEnd)); 29989566063dSJacob Faibussowitsch PetscCall(DMPlexGetMaxSizes(dm, &maxConeSize, NULL)); 29999566063dSJacob Faibussowitsch PetscCall(DMGetWorkArray(subdm, maxConeSize, MPIU_INT, (void **)&subface)); 3000e6ccafaeSMatthew G Knepley for (c = 0; c < numSubCells; ++c) { 3001e6ccafaeSMatthew G Knepley const PetscInt cell = subCells[c]; 3002efa14ee0SMatthew G Knepley const PetscInt subcell = c; 30030298fd71SBarry Smith PetscInt *closure = NULL; 3004efa14ee0SMatthew G Knepley PetscInt closureSize, cl, numCorners = 0, faceSize = 0; 3005e6ccafaeSMatthew G Knepley 30069566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(dm, cell, PETSC_TRUE, &closureSize, &closure)); 3007efa14ee0SMatthew G Knepley for (cl = 0; cl < closureSize * 2; cl += 2) { 3008efa14ee0SMatthew G Knepley const PetscInt point = closure[cl]; 3009e6ccafaeSMatthew G Knepley PetscInt subVertex; 3010e6ccafaeSMatthew G Knepley 3011efa14ee0SMatthew G Knepley if ((point >= vStart) && (point < vEnd)) { 3012efa14ee0SMatthew G Knepley ++numCorners; 30139566063dSJacob Faibussowitsch PetscCall(PetscFindInt(point, numSubVertices, subVertices, &subVertex)); 3014efa14ee0SMatthew G Knepley if (subVertex >= 0) { 3015efa14ee0SMatthew G Knepley closure[faceSize] = point; 301665560c7fSMatthew G Knepley subface[faceSize] = firstSubVertex + subVertex; 3017e6ccafaeSMatthew G Knepley ++faceSize; 3018e6ccafaeSMatthew G Knepley } 3019e6ccafaeSMatthew G Knepley } 3020e6ccafaeSMatthew G Knepley } 302163a3b9bcSJacob Faibussowitsch PetscCheck(faceSize <= nFV, comm, PETSC_ERR_ARG_WRONG, "Invalid submesh: Too many vertices %" PetscInt_FMT " of an element on the surface", faceSize); 302248a46eb9SPierre Jolivet if (faceSize == nFV) PetscCall(DMPlexInsertFace_Internal(dm, subdm, faceSize, closure, subface, numCorners, cell, subcell, firstSubFace, &newFacePoint)); 30239566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dm, cell, PETSC_TRUE, &closureSize, &closure)); 3024e6ccafaeSMatthew G Knepley } 30259566063dSJacob Faibussowitsch PetscCall(DMRestoreWorkArray(subdm, maxConeSize, MPIU_INT, (void **)&subface)); 30269566063dSJacob Faibussowitsch PetscCall(DMPlexSymmetrize(subdm)); 30279566063dSJacob Faibussowitsch PetscCall(DMPlexStratify(subdm)); 3028e6ccafaeSMatthew G Knepley /* Build coordinates */ 3029efa14ee0SMatthew G Knepley { 3030efa14ee0SMatthew G Knepley PetscSection coordSection, subCoordSection; 3031efa14ee0SMatthew G Knepley Vec coordinates, subCoordinates; 3032efa14ee0SMatthew G Knepley PetscScalar *coords, *subCoords; 3033285d324eSMatthew G. Knepley PetscInt numComp, coordSize, v; 303424640c55SToby Isaac const char *name; 3035efa14ee0SMatthew G Knepley 30369566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateSection(dm, &coordSection)); 30379566063dSJacob Faibussowitsch PetscCall(DMGetCoordinatesLocal(dm, &coordinates)); 30389566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateSection(subdm, &subCoordSection)); 30399566063dSJacob Faibussowitsch PetscCall(PetscSectionSetNumFields(subCoordSection, 1)); 30409566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldComponents(coordSection, 0, &numComp)); 30419566063dSJacob Faibussowitsch PetscCall(PetscSectionSetFieldComponents(subCoordSection, 0, numComp)); 30429566063dSJacob Faibussowitsch PetscCall(PetscSectionSetChart(subCoordSection, firstSubVertex, firstSubVertex + numSubVertices)); 3043efa14ee0SMatthew G Knepley for (v = 0; v < numSubVertices; ++v) { 3044efa14ee0SMatthew G Knepley const PetscInt vertex = subVertices[v]; 3045efa14ee0SMatthew G Knepley const PetscInt subvertex = firstSubVertex + v; 3046efa14ee0SMatthew G Knepley PetscInt dof; 3047efa14ee0SMatthew G Knepley 30489566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(coordSection, vertex, &dof)); 30499566063dSJacob Faibussowitsch PetscCall(PetscSectionSetDof(subCoordSection, subvertex, dof)); 30509566063dSJacob Faibussowitsch PetscCall(PetscSectionSetFieldDof(subCoordSection, subvertex, 0, dof)); 3051e6ccafaeSMatthew G Knepley } 30529566063dSJacob Faibussowitsch PetscCall(PetscSectionSetUp(subCoordSection)); 30539566063dSJacob Faibussowitsch PetscCall(PetscSectionGetStorageSize(subCoordSection, &coordSize)); 30549566063dSJacob Faibussowitsch PetscCall(VecCreate(PETSC_COMM_SELF, &subCoordinates)); 30559566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)coordinates, &name)); 30569566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)subCoordinates, name)); 30579566063dSJacob Faibussowitsch PetscCall(VecSetSizes(subCoordinates, coordSize, PETSC_DETERMINE)); 30589566063dSJacob Faibussowitsch PetscCall(VecSetType(subCoordinates, VECSTANDARD)); 3059830e53efSMatthew G. Knepley if (coordSize) { 30609566063dSJacob Faibussowitsch PetscCall(VecGetArray(coordinates, &coords)); 30619566063dSJacob Faibussowitsch PetscCall(VecGetArray(subCoordinates, &subCoords)); 3062efa14ee0SMatthew G Knepley for (v = 0; v < numSubVertices; ++v) { 3063efa14ee0SMatthew G Knepley const PetscInt vertex = subVertices[v]; 3064efa14ee0SMatthew G Knepley const PetscInt subvertex = firstSubVertex + v; 3065efa14ee0SMatthew G Knepley PetscInt dof, off, sdof, soff, d; 3066e6ccafaeSMatthew G Knepley 30679566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(coordSection, vertex, &dof)); 30689566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(coordSection, vertex, &off)); 30699566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(subCoordSection, subvertex, &sdof)); 30709566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(subCoordSection, subvertex, &soff)); 307163a3b9bcSJacob Faibussowitsch PetscCheck(dof == sdof, comm, PETSC_ERR_PLIB, "Coordinate dimension %" PetscInt_FMT " on subvertex %" PetscInt_FMT ", vertex %" PetscInt_FMT " should be %" PetscInt_FMT, sdof, subvertex, vertex, dof); 3072e6ccafaeSMatthew G Knepley for (d = 0; d < dof; ++d) subCoords[soff + d] = coords[off + d]; 3073e6ccafaeSMatthew G Knepley } 30749566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(coordinates, &coords)); 30759566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(subCoordinates, &subCoords)); 30763b399e24SMatthew G. Knepley } 30779566063dSJacob Faibussowitsch PetscCall(DMSetCoordinatesLocal(subdm, subCoordinates)); 30789566063dSJacob Faibussowitsch PetscCall(VecDestroy(&subCoordinates)); 3079e6ccafaeSMatthew G Knepley } 3080efa14ee0SMatthew G Knepley /* Cleanup */ 30819566063dSJacob Faibussowitsch if (subvertexIS) PetscCall(ISRestoreIndices(subvertexIS, &subVertices)); 30829566063dSJacob Faibussowitsch PetscCall(ISDestroy(&subvertexIS)); 30839566063dSJacob Faibussowitsch if (subcellIS) PetscCall(ISRestoreIndices(subcellIS, &subCells)); 30849566063dSJacob Faibussowitsch PetscCall(ISDestroy(&subcellIS)); 3085e6ccafaeSMatthew G Knepley PetscFunctionReturn(0); 3086e6ccafaeSMatthew G Knepley } 3087e6ccafaeSMatthew G Knepley 3088d0609cedSBarry Smith /* TODO: Fix this to properly propogate up error conditions it may find */ 30899371c9d4SSatish Balay static inline PetscInt DMPlexFilterPoint_Internal(PetscInt point, PetscInt firstSubPoint, PetscInt numSubPoints, const PetscInt subPoints[]) { 30903982b651SMatthew G. Knepley PetscInt subPoint; 30913982b651SMatthew G. Knepley PetscErrorCode ierr; 30923982b651SMatthew G. Knepley 30939371c9d4SSatish Balay ierr = PetscFindInt(point, numSubPoints, subPoints, &subPoint); 30949371c9d4SSatish Balay if (ierr) return -1; 30953982b651SMatthew G. Knepley return subPoint < 0 ? subPoint : firstSubPoint + subPoint; 30963982b651SMatthew G. Knepley } 30973982b651SMatthew G. Knepley 3098*dd05d810SMatthew G. Knepley /* TODO: Fix this to properly propogate up error conditions it may find */ 3099*dd05d810SMatthew G. Knepley static inline PetscInt DMPlexFilterPointPerm_Internal(PetscInt point, PetscInt firstSubPoint, PetscInt numSubPoints, const PetscInt subPoints[], const PetscInt subIndices[]) { 3100*dd05d810SMatthew G. Knepley PetscInt subPoint; 3101*dd05d810SMatthew G. Knepley PetscErrorCode ierr; 3102*dd05d810SMatthew G. Knepley 3103*dd05d810SMatthew G. Knepley ierr = PetscFindInt(point, numSubPoints, subPoints, &subPoint); 3104*dd05d810SMatthew G. Knepley if (ierr) return -1; 3105*dd05d810SMatthew G. Knepley return subPoint < 0 ? subPoint : firstSubPoint + (subIndices ? subIndices[subPoint] : subPoint); 3106*dd05d810SMatthew G. Knepley } 3107*dd05d810SMatthew G. Knepley 31089371c9d4SSatish Balay static PetscErrorCode DMPlexFilterLabels_Internal(DM dm, const PetscInt numSubPoints[], const PetscInt *subpoints[], const PetscInt firstSubPoint[], DM subdm) { 3109695799ffSMatthew G. Knepley DMLabel depthLabel; 3110212103e5SMatthew Knepley PetscInt Nl, l, d; 3111212103e5SMatthew Knepley 3112212103e5SMatthew Knepley PetscFunctionBegin; 3113695799ffSMatthew G. Knepley // Reset depth label for fast lookup 3114695799ffSMatthew G. Knepley PetscCall(DMPlexGetDepthLabel(dm, &depthLabel)); 3115695799ffSMatthew G. Knepley PetscCall(DMLabelMakeAllInvalid_Internal(depthLabel)); 31169566063dSJacob Faibussowitsch PetscCall(DMGetNumLabels(dm, &Nl)); 3117212103e5SMatthew Knepley for (l = 0; l < Nl; ++l) { 3118212103e5SMatthew Knepley DMLabel label, newlabel; 3119212103e5SMatthew Knepley const char *lname; 3120d56405f8SMatthew G. Knepley PetscBool isDepth, isDim, isCelltype, isVTK; 3121212103e5SMatthew Knepley IS valueIS; 3122212103e5SMatthew Knepley const PetscInt *values; 3123212103e5SMatthew Knepley PetscInt Nv, v; 3124212103e5SMatthew Knepley 31259566063dSJacob Faibussowitsch PetscCall(DMGetLabelName(dm, l, &lname)); 31269566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(lname, "depth", &isDepth)); 31279566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(lname, "dim", &isDim)); 31289566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(lname, "celltype", &isCelltype)); 31299566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(lname, "vtk", &isVTK)); 3130d56405f8SMatthew G. Knepley if (isDepth || isDim || isCelltype || isVTK) continue; 31319566063dSJacob Faibussowitsch PetscCall(DMCreateLabel(subdm, lname)); 31329566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, lname, &label)); 31339566063dSJacob Faibussowitsch PetscCall(DMGetLabel(subdm, lname, &newlabel)); 31349566063dSJacob Faibussowitsch PetscCall(DMLabelGetDefaultValue(label, &v)); 31359566063dSJacob Faibussowitsch PetscCall(DMLabelSetDefaultValue(newlabel, v)); 31369566063dSJacob Faibussowitsch PetscCall(DMLabelGetValueIS(label, &valueIS)); 31379566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(valueIS, &Nv)); 31389566063dSJacob Faibussowitsch PetscCall(ISGetIndices(valueIS, &values)); 3139212103e5SMatthew Knepley for (v = 0; v < Nv; ++v) { 3140212103e5SMatthew Knepley IS pointIS; 3141212103e5SMatthew Knepley const PetscInt *points; 3142212103e5SMatthew Knepley PetscInt Np, p; 3143212103e5SMatthew Knepley 31449566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(label, values[v], &pointIS)); 31459566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(pointIS, &Np)); 31469566063dSJacob Faibussowitsch PetscCall(ISGetIndices(pointIS, &points)); 3147212103e5SMatthew Knepley for (p = 0; p < Np; ++p) { 3148212103e5SMatthew Knepley const PetscInt point = points[p]; 3149212103e5SMatthew Knepley PetscInt subp; 3150212103e5SMatthew Knepley 31519566063dSJacob Faibussowitsch PetscCall(DMPlexGetPointDepth(dm, point, &d)); 3152212103e5SMatthew Knepley subp = DMPlexFilterPoint_Internal(point, firstSubPoint[d], numSubPoints[d], subpoints[d]); 31539566063dSJacob Faibussowitsch if (subp >= 0) PetscCall(DMLabelSetValue(newlabel, subp, values[v])); 3154212103e5SMatthew Knepley } 31559566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(pointIS, &points)); 31569566063dSJacob Faibussowitsch PetscCall(ISDestroy(&pointIS)); 3157212103e5SMatthew Knepley } 31589566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(valueIS, &values)); 31599566063dSJacob Faibussowitsch PetscCall(ISDestroy(&valueIS)); 3160212103e5SMatthew Knepley } 3161212103e5SMatthew Knepley PetscFunctionReturn(0); 3162212103e5SMatthew Knepley } 3163212103e5SMatthew Knepley 31649371c9d4SSatish Balay static PetscErrorCode DMPlexCreateSubmeshGeneric_Interpolated(DM dm, DMLabel label, PetscInt value, PetscBool markedFaces, PetscBool isCohesive, PetscInt cellHeight, DM subdm) { 316582f516ccSBarry Smith MPI_Comm comm; 316653156dfcSMatthew G. Knepley DMLabel subpointMap; 3167efa14ee0SMatthew G Knepley IS *subpointIS; 3168efa14ee0SMatthew G Knepley const PetscInt **subpoints; 31693982b651SMatthew G. Knepley PetscInt *numSubPoints, *firstSubPoint, *coneNew, *orntNew; 3170*dd05d810SMatthew G. Knepley PetscInt totSubPoints = 0, maxConeSize, dim, sdim, cdim, p, d, v; 31710d366550SMatthew G. Knepley PetscMPIInt rank; 3172e6ccafaeSMatthew G Knepley 3173e6ccafaeSMatthew G Knepley PetscFunctionBegin; 31749566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)dm, &comm)); 31759566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 3176efa14ee0SMatthew G Knepley /* Create subpointMap which marks the submesh */ 31779566063dSJacob Faibussowitsch PetscCall(DMLabelCreate(PETSC_COMM_SELF, "subpoint_map", &subpointMap)); 31789566063dSJacob Faibussowitsch PetscCall(DMPlexSetSubpointMap(subdm, subpointMap)); 3179bec263e5SMatthew G. Knepley if (cellHeight) { 31809566063dSJacob Faibussowitsch if (isCohesive) PetscCall(DMPlexMarkCohesiveSubmesh_Interpolated(dm, label, value, subpointMap, subdm)); 31819566063dSJacob Faibussowitsch else PetscCall(DMPlexMarkSubmesh_Interpolated(dm, label, value, markedFaces, subpointMap, subdm)); 3182bec263e5SMatthew G. Knepley } else { 3183bec263e5SMatthew G. Knepley DMLabel depth; 3184bec263e5SMatthew G. Knepley IS pointIS; 3185bec263e5SMatthew G. Knepley const PetscInt *points; 3186b85c8bf9SMatthew G. Knepley PetscInt numPoints = 0; 3187bec263e5SMatthew G. Knepley 31889566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthLabel(dm, &depth)); 31899566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(label, value, &pointIS)); 3190b85c8bf9SMatthew G. Knepley if (pointIS) { 31919566063dSJacob Faibussowitsch PetscCall(ISGetIndices(pointIS, &points)); 31929566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(pointIS, &numPoints)); 3193b85c8bf9SMatthew G. Knepley } 3194bec263e5SMatthew G. Knepley for (p = 0; p < numPoints; ++p) { 3195bec263e5SMatthew G. Knepley PetscInt *closure = NULL; 3196bec263e5SMatthew G. Knepley PetscInt closureSize, c, pdim; 3197bec263e5SMatthew G. Knepley 31989566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(dm, points[p], PETSC_TRUE, &closureSize, &closure)); 3199bec263e5SMatthew G. Knepley for (c = 0; c < closureSize * 2; c += 2) { 32009566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(depth, closure[c], &pdim)); 32019566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(subpointMap, closure[c], pdim)); 3202bec263e5SMatthew G. Knepley } 32039566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dm, points[p], PETSC_TRUE, &closureSize, &closure)); 3204bec263e5SMatthew G. Knepley } 32059566063dSJacob Faibussowitsch if (pointIS) PetscCall(ISRestoreIndices(pointIS, &points)); 32069566063dSJacob Faibussowitsch PetscCall(ISDestroy(&pointIS)); 3207bec263e5SMatthew G. Knepley } 3208efa14ee0SMatthew G Knepley /* Setup chart */ 32099566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 3210*dd05d810SMatthew G. Knepley PetscCall(DMGetCoordinateDim(dm, &cdim)); 32119566063dSJacob Faibussowitsch PetscCall(PetscMalloc4(dim + 1, &numSubPoints, dim + 1, &firstSubPoint, dim + 1, &subpointIS, dim + 1, &subpoints)); 3212e6ccafaeSMatthew G Knepley for (d = 0; d <= dim; ++d) { 32139566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumSize(subpointMap, d, &numSubPoints[d])); 3214e6ccafaeSMatthew G Knepley totSubPoints += numSubPoints[d]; 3215e6ccafaeSMatthew G Knepley } 3216*dd05d810SMatthew G. Knepley // Determine submesh dimension 3217*dd05d810SMatthew G. Knepley PetscCall(DMGetDimension(subdm, &sdim)); 3218*dd05d810SMatthew G. Knepley if (sdim > 0) { 3219*dd05d810SMatthew G. Knepley // Calling function knows what dimension to use, and we include neighboring cells as well 3220*dd05d810SMatthew G. Knepley sdim = dim; 3221*dd05d810SMatthew G. Knepley } else { 3222*dd05d810SMatthew G. Knepley // We reset the subdimension based on what is being selected 3223*dd05d810SMatthew G. Knepley PetscInt lsdim; 3224*dd05d810SMatthew G. Knepley for (lsdim = dim; lsdim >= 0; --lsdim) 3225*dd05d810SMatthew G. Knepley if (numSubPoints[lsdim]) break; 3226*dd05d810SMatthew G. Knepley PetscCall(MPI_Allreduce(&lsdim, &sdim, 1, MPIU_INT, MPIU_MAX, comm)); 3227*dd05d810SMatthew G. Knepley PetscCall(DMSetDimension(subdm, sdim)); 3228*dd05d810SMatthew G. Knepley PetscCall(DMSetCoordinateDim(subdm, cdim)); 3229*dd05d810SMatthew G. Knepley } 32309566063dSJacob Faibussowitsch PetscCall(DMPlexSetChart(subdm, 0, totSubPoints)); 32319566063dSJacob Faibussowitsch PetscCall(DMPlexSetVTKCellHeight(subdm, cellHeight)); 3232e6ccafaeSMatthew G Knepley /* Set cone sizes */ 3233*dd05d810SMatthew G. Knepley firstSubPoint[sdim] = 0; 3234*dd05d810SMatthew G. Knepley firstSubPoint[0] = firstSubPoint[sdim] + numSubPoints[sdim]; 3235*dd05d810SMatthew G. Knepley if (sdim > 1) firstSubPoint[sdim - 1] = firstSubPoint[0] + numSubPoints[0]; 3236*dd05d810SMatthew G. Knepley if (sdim > 2) firstSubPoint[sdim - 2] = firstSubPoint[sdim - 1] + numSubPoints[sdim - 1]; 3237*dd05d810SMatthew G. Knepley for (d = 0; d <= sdim; ++d) { 32389566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(subpointMap, d, &subpointIS[d])); 32399566063dSJacob Faibussowitsch if (subpointIS[d]) PetscCall(ISGetIndices(subpointIS[d], &subpoints[d])); 3240e6ccafaeSMatthew G Knepley } 3241412e9a14SMatthew G. Knepley /* We do not want this label automatically computed, instead we compute it here */ 32429566063dSJacob Faibussowitsch PetscCall(DMCreateLabel(subdm, "celltype")); 3243*dd05d810SMatthew G. Knepley for (d = 0; d <= sdim; ++d) { 3244e6ccafaeSMatthew G Knepley for (p = 0; p < numSubPoints[d]; ++p) { 3245e6ccafaeSMatthew G Knepley const PetscInt point = subpoints[d][p]; 3246e6ccafaeSMatthew G Knepley const PetscInt subpoint = firstSubPoint[d] + p; 3247e6ccafaeSMatthew G Knepley const PetscInt *cone; 324815100a53SVaclav Hapla PetscInt coneSize; 3249e6ccafaeSMatthew G Knepley 32509566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, point, &coneSize)); 3251*dd05d810SMatthew G. Knepley if (cellHeight && (d == sdim)) { 325215100a53SVaclav Hapla PetscInt coneSizeNew, c, val; 325315100a53SVaclav Hapla 32549566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, point, &cone)); 3255e6ccafaeSMatthew G Knepley for (c = 0, coneSizeNew = 0; c < coneSize; ++c) { 32569566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(subpointMap, cone[c], &val)); 3257e6ccafaeSMatthew G Knepley if (val >= 0) coneSizeNew++; 3258e6ccafaeSMatthew G Knepley } 32599566063dSJacob Faibussowitsch PetscCall(DMPlexSetConeSize(subdm, subpoint, coneSizeNew)); 32609566063dSJacob Faibussowitsch PetscCall(DMPlexSetCellType(subdm, subpoint, DM_POLYTOPE_FV_GHOST)); 326115100a53SVaclav Hapla } else { 326215100a53SVaclav Hapla DMPolytopeType ct; 326315100a53SVaclav Hapla 326415100a53SVaclav Hapla PetscCall(DMPlexSetConeSize(subdm, subpoint, coneSize)); 326515100a53SVaclav Hapla PetscCall(DMPlexGetCellType(dm, point, &ct)); 326615100a53SVaclav Hapla PetscCall(DMPlexSetCellType(subdm, subpoint, ct)); 3267e6ccafaeSMatthew G Knepley } 3268e6ccafaeSMatthew G Knepley } 3269e6ccafaeSMatthew G Knepley } 32709566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&subpointMap)); 32719566063dSJacob Faibussowitsch PetscCall(DMSetUp(subdm)); 3272e6ccafaeSMatthew G Knepley /* Set cones */ 32739566063dSJacob Faibussowitsch PetscCall(DMPlexGetMaxSizes(dm, &maxConeSize, NULL)); 32749566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(maxConeSize, &coneNew, maxConeSize, &orntNew)); 3275*dd05d810SMatthew G. Knepley for (d = 0; d <= sdim; ++d) { 3276e6ccafaeSMatthew G Knepley for (p = 0; p < numSubPoints[d]; ++p) { 3277e6ccafaeSMatthew G Knepley const PetscInt point = subpoints[d][p]; 3278e6ccafaeSMatthew G Knepley const PetscInt subpoint = firstSubPoint[d] + p; 32790e49e2e2SMatthew G. Knepley const PetscInt *cone, *ornt; 32800d366550SMatthew G. Knepley PetscInt coneSize, subconeSize, coneSizeNew, c, subc, fornt = 0; 3281e6ccafaeSMatthew G Knepley 3282*dd05d810SMatthew G. Knepley if (d == sdim - 1) { 32830d366550SMatthew G. Knepley const PetscInt *support, *cone, *ornt; 32840d366550SMatthew G. Knepley PetscInt supportSize, coneSize, s, subc; 32850d366550SMatthew G. Knepley 32869566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(dm, point, &support)); 32879566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dm, point, &supportSize)); 32880d366550SMatthew G. Knepley for (s = 0; s < supportSize; ++s) { 3289412e9a14SMatthew G. Knepley PetscBool isHybrid; 3290412e9a14SMatthew G. Knepley 32919566063dSJacob Faibussowitsch PetscCall(DMPlexCellIsHybrid_Internal(dm, support[s], &isHybrid)); 3292412e9a14SMatthew G. Knepley if (!isHybrid) continue; 32939566063dSJacob Faibussowitsch PetscCall(PetscFindInt(support[s], numSubPoints[d + 1], subpoints[d + 1], &subc)); 32940d366550SMatthew G. Knepley if (subc >= 0) { 32950d366550SMatthew G. Knepley const PetscInt ccell = subpoints[d + 1][subc]; 32960d366550SMatthew G. Knepley 32979566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, ccell, &cone)); 32989566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, ccell, &coneSize)); 32999566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeOrientation(dm, ccell, &ornt)); 33000d366550SMatthew G. Knepley for (c = 0; c < coneSize; ++c) { 33010d366550SMatthew G. Knepley if (cone[c] == point) { 33020d366550SMatthew G. Knepley fornt = ornt[c]; 33030d366550SMatthew G. Knepley break; 33040d366550SMatthew G. Knepley } 33050d366550SMatthew G. Knepley } 33060d366550SMatthew G. Knepley break; 33070d366550SMatthew G. Knepley } 33080d366550SMatthew G. Knepley } 33090d366550SMatthew G. Knepley } 33109566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, point, &coneSize)); 33119566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(subdm, subpoint, &subconeSize)); 33129566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, point, &cone)); 33139566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeOrientation(dm, point, &ornt)); 3314e6ccafaeSMatthew G Knepley for (c = 0, coneSizeNew = 0; c < coneSize; ++c) { 33159566063dSJacob Faibussowitsch PetscCall(PetscFindInt(cone[c], numSubPoints[d - 1], subpoints[d - 1], &subc)); 331601a2673eSMatthew G. Knepley if (subc >= 0) { 331701a2673eSMatthew G. Knepley coneNew[coneSizeNew] = firstSubPoint[d - 1] + subc; 33183982b651SMatthew G. Knepley orntNew[coneSizeNew] = ornt[c]; 331901a2673eSMatthew G. Knepley ++coneSizeNew; 332001a2673eSMatthew G. Knepley } 3321e6ccafaeSMatthew G Knepley } 332263a3b9bcSJacob Faibussowitsch PetscCheck(coneSizeNew == subconeSize, comm, PETSC_ERR_PLIB, "Number of cone points located %" PetscInt_FMT " does not match subcone size %" PetscInt_FMT, coneSizeNew, subconeSize); 33239566063dSJacob Faibussowitsch PetscCall(DMPlexSetCone(subdm, subpoint, coneNew)); 33249566063dSJacob Faibussowitsch PetscCall(DMPlexSetConeOrientation(subdm, subpoint, orntNew)); 33259566063dSJacob Faibussowitsch if (fornt < 0) PetscCall(DMPlexOrientPoint(subdm, subpoint, fornt)); 3326e6ccafaeSMatthew G Knepley } 3327e6ccafaeSMatthew G Knepley } 33289566063dSJacob Faibussowitsch PetscCall(PetscFree2(coneNew, orntNew)); 33299566063dSJacob Faibussowitsch PetscCall(DMPlexSymmetrize(subdm)); 33309566063dSJacob Faibussowitsch PetscCall(DMPlexStratify(subdm)); 3331e6ccafaeSMatthew G Knepley /* Build coordinates */ 3332e6ccafaeSMatthew G Knepley { 3333e6ccafaeSMatthew G Knepley PetscSection coordSection, subCoordSection; 3334e6ccafaeSMatthew G Knepley Vec coordinates, subCoordinates; 3335e6ccafaeSMatthew G Knepley PetscScalar *coords, *subCoords; 3336c0e8cf5fSMatthew G. Knepley PetscInt cdim, numComp, coordSize; 333724640c55SToby Isaac const char *name; 3338e6ccafaeSMatthew G Knepley 33399566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDim(dm, &cdim)); 33409566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateSection(dm, &coordSection)); 33419566063dSJacob Faibussowitsch PetscCall(DMGetCoordinatesLocal(dm, &coordinates)); 33429566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateSection(subdm, &subCoordSection)); 33439566063dSJacob Faibussowitsch PetscCall(PetscSectionSetNumFields(subCoordSection, 1)); 33449566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldComponents(coordSection, 0, &numComp)); 33459566063dSJacob Faibussowitsch PetscCall(PetscSectionSetFieldComponents(subCoordSection, 0, numComp)); 33469566063dSJacob Faibussowitsch PetscCall(PetscSectionSetChart(subCoordSection, firstSubPoint[0], firstSubPoint[0] + numSubPoints[0])); 3347e6ccafaeSMatthew G Knepley for (v = 0; v < numSubPoints[0]; ++v) { 3348e6ccafaeSMatthew G Knepley const PetscInt vertex = subpoints[0][v]; 3349e6ccafaeSMatthew G Knepley const PetscInt subvertex = firstSubPoint[0] + v; 3350e6ccafaeSMatthew G Knepley PetscInt dof; 3351e6ccafaeSMatthew G Knepley 33529566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(coordSection, vertex, &dof)); 33539566063dSJacob Faibussowitsch PetscCall(PetscSectionSetDof(subCoordSection, subvertex, dof)); 33549566063dSJacob Faibussowitsch PetscCall(PetscSectionSetFieldDof(subCoordSection, subvertex, 0, dof)); 3355e6ccafaeSMatthew G Knepley } 33569566063dSJacob Faibussowitsch PetscCall(PetscSectionSetUp(subCoordSection)); 33579566063dSJacob Faibussowitsch PetscCall(PetscSectionGetStorageSize(subCoordSection, &coordSize)); 33589566063dSJacob Faibussowitsch PetscCall(VecCreate(PETSC_COMM_SELF, &subCoordinates)); 33599566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)coordinates, &name)); 33609566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)subCoordinates, name)); 33619566063dSJacob Faibussowitsch PetscCall(VecSetSizes(subCoordinates, coordSize, PETSC_DETERMINE)); 33629566063dSJacob Faibussowitsch PetscCall(VecSetBlockSize(subCoordinates, cdim)); 33639566063dSJacob Faibussowitsch PetscCall(VecSetType(subCoordinates, VECSTANDARD)); 33649566063dSJacob Faibussowitsch PetscCall(VecGetArray(coordinates, &coords)); 33659566063dSJacob Faibussowitsch PetscCall(VecGetArray(subCoordinates, &subCoords)); 3366e6ccafaeSMatthew G Knepley for (v = 0; v < numSubPoints[0]; ++v) { 3367e6ccafaeSMatthew G Knepley const PetscInt vertex = subpoints[0][v]; 3368e6ccafaeSMatthew G Knepley const PetscInt subvertex = firstSubPoint[0] + v; 3369e6ccafaeSMatthew G Knepley PetscInt dof, off, sdof, soff, d; 3370e6ccafaeSMatthew G Knepley 33719566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(coordSection, vertex, &dof)); 33729566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(coordSection, vertex, &off)); 33739566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(subCoordSection, subvertex, &sdof)); 33749566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(subCoordSection, subvertex, &soff)); 337563a3b9bcSJacob Faibussowitsch PetscCheck(dof == sdof, comm, PETSC_ERR_PLIB, "Coordinate dimension %" PetscInt_FMT " on subvertex %" PetscInt_FMT ", vertex %" PetscInt_FMT " should be %" PetscInt_FMT, sdof, subvertex, vertex, dof); 3376efa14ee0SMatthew G Knepley for (d = 0; d < dof; ++d) subCoords[soff + d] = coords[off + d]; 3377e6ccafaeSMatthew G Knepley } 33789566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(coordinates, &coords)); 33799566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(subCoordinates, &subCoords)); 33809566063dSJacob Faibussowitsch PetscCall(DMSetCoordinatesLocal(subdm, subCoordinates)); 33819566063dSJacob Faibussowitsch PetscCall(VecDestroy(&subCoordinates)); 3382e6ccafaeSMatthew G Knepley } 33833982b651SMatthew G. Knepley /* Build SF: We need this complexity because subpoints might not be selected on the owning process */ 33843982b651SMatthew G. Knepley { 33853982b651SMatthew G. Knepley PetscSF sfPoint, sfPointSub; 33863982b651SMatthew G. Knepley IS subpIS; 33873982b651SMatthew G. Knepley const PetscSFNode *remotePoints; 33885033f954SMatthew G. Knepley PetscSFNode *sremotePoints = NULL, *newLocalPoints = NULL, *newOwners = NULL; 33895033f954SMatthew G. Knepley const PetscInt *localPoints, *subpoints, *rootdegree; 3390*dd05d810SMatthew G. Knepley PetscInt *slocalPoints = NULL, *sortedPoints = NULL, *sortedIndices = NULL; 33915033f954SMatthew G. Knepley PetscInt numRoots, numLeaves, numSubpoints = 0, numSubroots, numSubleaves = 0, l, sl = 0, ll = 0, pStart, pEnd, p; 33925033f954SMatthew G. Knepley PetscMPIInt rank, size; 33933982b651SMatthew G. Knepley 33949566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)dm), &rank)); 33955033f954SMatthew G. Knepley PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)dm), &size)); 33969566063dSJacob Faibussowitsch PetscCall(DMGetPointSF(dm, &sfPoint)); 33979566063dSJacob Faibussowitsch PetscCall(DMGetPointSF(subdm, &sfPointSub)); 33989566063dSJacob Faibussowitsch PetscCall(DMPlexGetChart(dm, &pStart, &pEnd)); 33999566063dSJacob Faibussowitsch PetscCall(DMPlexGetChart(subdm, NULL, &numSubroots)); 34009566063dSJacob Faibussowitsch PetscCall(DMPlexGetSubpointIS(subdm, &subpIS)); 34013982b651SMatthew G. Knepley if (subpIS) { 3402*dd05d810SMatthew G. Knepley PetscBool sorted = PETSC_TRUE; 3403*dd05d810SMatthew G. Knepley 34049566063dSJacob Faibussowitsch PetscCall(ISGetIndices(subpIS, &subpoints)); 34059566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(subpIS, &numSubpoints)); 3406*dd05d810SMatthew G. Knepley for (p = 1; p < numSubpoints; ++p) sorted = sorted && (subpoints[p] >= subpoints[p - 1]) ? PETSC_TRUE : PETSC_FALSE; 3407*dd05d810SMatthew G. Knepley if (!sorted) { 3408*dd05d810SMatthew G. Knepley PetscCall(PetscMalloc2(numSubpoints, &sortedPoints, numSubpoints, &sortedIndices)); 3409*dd05d810SMatthew G. Knepley for (p = 0; p < numSubpoints; ++p) sortedIndices[p] = p; 3410*dd05d810SMatthew G. Knepley PetscCall(PetscArraycpy(sortedPoints, subpoints, numSubpoints)); 3411*dd05d810SMatthew G. Knepley PetscCall(PetscSortIntWithArray(numSubpoints, sortedPoints, sortedIndices)); 3412*dd05d810SMatthew G. Knepley } 34133982b651SMatthew G. Knepley } 34149566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(sfPoint, &numRoots, &numLeaves, &localPoints, &remotePoints)); 34153982b651SMatthew G. Knepley if (numRoots >= 0) { 34165033f954SMatthew G. Knepley PetscCall(PetscSFComputeDegreeBegin(sfPoint, &rootdegree)); 34175033f954SMatthew G. Knepley PetscCall(PetscSFComputeDegreeEnd(sfPoint, &rootdegree)); 34189566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(pEnd - pStart, &newLocalPoints, numRoots, &newOwners)); 34193982b651SMatthew G. Knepley for (p = 0; p < pEnd - pStart; ++p) { 34203982b651SMatthew G. Knepley newLocalPoints[p].rank = -2; 34213982b651SMatthew G. Knepley newLocalPoints[p].index = -2; 34223982b651SMatthew G. Knepley } 34233982b651SMatthew G. Knepley /* Set subleaves */ 34243982b651SMatthew G. Knepley for (l = 0; l < numLeaves; ++l) { 34253982b651SMatthew G. Knepley const PetscInt point = localPoints[l]; 3426*dd05d810SMatthew G. Knepley const PetscInt subpoint = DMPlexFilterPointPerm_Internal(point, 0, numSubpoints, sortedPoints ? sortedPoints : subpoints, sortedIndices); 34273982b651SMatthew G. Knepley 34283982b651SMatthew G. Knepley if (subpoint < 0) continue; 34293982b651SMatthew G. Knepley newLocalPoints[point - pStart].rank = rank; 34303982b651SMatthew G. Knepley newLocalPoints[point - pStart].index = subpoint; 34313982b651SMatthew G. Knepley ++numSubleaves; 34323982b651SMatthew G. Knepley } 34333982b651SMatthew G. Knepley /* Must put in owned subpoints */ 34343982b651SMatthew G. Knepley for (p = pStart; p < pEnd; ++p) { 34353982b651SMatthew G. Knepley newOwners[p - pStart].rank = -3; 34363982b651SMatthew G. Knepley newOwners[p - pStart].index = -3; 34373982b651SMatthew G. Knepley } 3438d9384f27SMatthew G. Knepley for (p = 0; p < numSubpoints; ++p) { 34395033f954SMatthew G. Knepley /* Hold on to currently owned points */ 34405033f954SMatthew G. Knepley if (rootdegree[subpoints[p] - pStart]) newOwners[subpoints[p] - pStart].rank = rank + size; 34415033f954SMatthew G. Knepley else newOwners[subpoints[p] - pStart].rank = rank; 3442d9384f27SMatthew G. Knepley newOwners[subpoints[p] - pStart].index = p; 34433982b651SMatthew G. Knepley } 34449566063dSJacob Faibussowitsch PetscCall(PetscSFReduceBegin(sfPoint, MPIU_2INT, newLocalPoints, newOwners, MPI_MAXLOC)); 34459566063dSJacob Faibussowitsch PetscCall(PetscSFReduceEnd(sfPoint, MPIU_2INT, newLocalPoints, newOwners, MPI_MAXLOC)); 34469371c9d4SSatish Balay for (p = pStart; p < pEnd; ++p) 34479371c9d4SSatish Balay if (newOwners[p - pStart].rank >= size) newOwners[p - pStart].rank -= size; 34489566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(sfPoint, MPIU_2INT, newOwners, newLocalPoints, MPI_REPLACE)); 34499566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(sfPoint, MPIU_2INT, newOwners, newLocalPoints, MPI_REPLACE)); 34509566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(numSubleaves, &slocalPoints)); 34519566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(numSubleaves, &sremotePoints)); 34525033f954SMatthew G. Knepley for (l = 0; l < numLeaves; ++l) { 34533982b651SMatthew G. Knepley const PetscInt point = localPoints[l]; 3454*dd05d810SMatthew G. Knepley const PetscInt subpoint = DMPlexFilterPointPerm_Internal(point, 0, numSubpoints, sortedPoints ? sortedPoints : subpoints, sortedIndices); 34553982b651SMatthew G. Knepley 34563982b651SMatthew G. Knepley if (subpoint < 0) continue; 34579371c9d4SSatish Balay if (newLocalPoints[point].rank == rank) { 34589371c9d4SSatish Balay ++ll; 34599371c9d4SSatish Balay continue; 34609371c9d4SSatish Balay } 34613982b651SMatthew G. Knepley slocalPoints[sl] = subpoint; 34623982b651SMatthew G. Knepley sremotePoints[sl].rank = newLocalPoints[point].rank; 34633982b651SMatthew G. Knepley sremotePoints[sl].index = newLocalPoints[point].index; 346463a3b9bcSJacob Faibussowitsch PetscCheck(sremotePoints[sl].rank >= 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid remote rank for local point %" PetscInt_FMT, point); 346563a3b9bcSJacob Faibussowitsch PetscCheck(sremotePoints[sl].index >= 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid remote subpoint for local point %" PetscInt_FMT, point); 34663982b651SMatthew G. Knepley ++sl; 34673982b651SMatthew G. Knepley } 34681dca8a05SBarry Smith PetscCheck(sl + ll == numSubleaves, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Mismatch in number of subleaves %" PetscInt_FMT " + %" PetscInt_FMT " != %" PetscInt_FMT, sl, ll, numSubleaves); 34699566063dSJacob Faibussowitsch PetscCall(PetscFree2(newLocalPoints, newOwners)); 34709566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(sfPointSub, numSubroots, sl, slocalPoints, PETSC_OWN_POINTER, sremotePoints, PETSC_OWN_POINTER)); 34713982b651SMatthew G. Knepley } 347248a46eb9SPierre Jolivet if (subpIS) PetscCall(ISRestoreIndices(subpIS, &subpoints)); 3473*dd05d810SMatthew G. Knepley PetscCall(PetscFree2(sortedPoints, sortedIndices)); 34743982b651SMatthew G. Knepley } 3475212103e5SMatthew Knepley /* Filter labels */ 34769566063dSJacob Faibussowitsch PetscCall(DMPlexFilterLabels_Internal(dm, numSubPoints, subpoints, firstSubPoint, subdm)); 3477efa14ee0SMatthew G Knepley /* Cleanup */ 3478*dd05d810SMatthew G. Knepley for (d = 0; d <= sdim; ++d) { 34799566063dSJacob Faibussowitsch if (subpointIS[d]) PetscCall(ISRestoreIndices(subpointIS[d], &subpoints[d])); 34809566063dSJacob Faibussowitsch PetscCall(ISDestroy(&subpointIS[d])); 3481e6ccafaeSMatthew G Knepley } 34829566063dSJacob Faibussowitsch PetscCall(PetscFree4(numSubPoints, firstSubPoint, subpointIS, subpoints)); 3483e6ccafaeSMatthew G Knepley PetscFunctionReturn(0); 3484e6ccafaeSMatthew G Knepley } 3485e6ccafaeSMatthew G Knepley 34869371c9d4SSatish Balay static PetscErrorCode DMPlexCreateSubmesh_Interpolated(DM dm, DMLabel vertexLabel, PetscInt value, PetscBool markedFaces, DM subdm) { 34873982b651SMatthew G. Knepley PetscFunctionBegin; 34889566063dSJacob Faibussowitsch PetscCall(DMPlexCreateSubmeshGeneric_Interpolated(dm, vertexLabel, value, markedFaces, PETSC_FALSE, 1, subdm)); 34893982b651SMatthew G. Knepley PetscFunctionReturn(0); 34903982b651SMatthew G. Knepley } 34913982b651SMatthew G. Knepley 3492d0fa310fSMatthew G. Knepley /*@ 3493e6ccafaeSMatthew G Knepley DMPlexCreateSubmesh - Extract a hypersurface from the mesh using vertices defined by a label 3494e6ccafaeSMatthew G Knepley 3495e6ccafaeSMatthew G Knepley Input Parameters: 3496e6ccafaeSMatthew G Knepley + dm - The original mesh 3497158acfadSMatthew G. Knepley . vertexLabel - The DMLabel marking points contained in the surface 3498158acfadSMatthew G. Knepley . value - The label value to use 3499158acfadSMatthew G. Knepley - markedFaces - PETSC_TRUE if surface faces are marked in addition to vertices, PETSC_FALSE if only vertices are marked 3500e6ccafaeSMatthew G Knepley 3501e6ccafaeSMatthew G Knepley Output Parameter: 3502e6ccafaeSMatthew G Knepley . subdm - The surface mesh 3503e6ccafaeSMatthew G Knepley 3504e6ccafaeSMatthew G Knepley Note: This function produces a DMLabel mapping original points in the submesh to their depth. This can be obtained using DMPlexGetSubpointMap(). 3505e6ccafaeSMatthew G Knepley 3506e6ccafaeSMatthew G Knepley Level: developer 3507e6ccafaeSMatthew G Knepley 3508db781477SPatrick Sanan .seealso: `DMPlexGetSubpointMap()`, `DMGetLabel()`, `DMLabelSetValue()` 3509830e53efSMatthew G. Knepley @*/ 35109371c9d4SSatish Balay PetscErrorCode DMPlexCreateSubmesh(DM dm, DMLabel vertexLabel, PetscInt value, PetscBool markedFaces, DM *subdm) { 3511827c4036SVaclav Hapla DMPlexInterpolatedFlag interpolated; 3512827c4036SVaclav Hapla PetscInt dim, cdim; 3513e6ccafaeSMatthew G Knepley 3514e6ccafaeSMatthew G Knepley PetscFunctionBegin; 3515e6ccafaeSMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 3516064a246eSJacob Faibussowitsch PetscValidPointer(subdm, 5); 35179566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 35189566063dSJacob Faibussowitsch PetscCall(DMCreate(PetscObjectComm((PetscObject)dm), subdm)); 35199566063dSJacob Faibussowitsch PetscCall(DMSetType(*subdm, DMPLEX)); 35209566063dSJacob Faibussowitsch PetscCall(DMSetDimension(*subdm, dim - 1)); 35219566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDim(dm, &cdim)); 35229566063dSJacob Faibussowitsch PetscCall(DMSetCoordinateDim(*subdm, cdim)); 35239566063dSJacob Faibussowitsch PetscCall(DMPlexIsInterpolated(dm, &interpolated)); 352408401ef6SPierre Jolivet PetscCheck(interpolated != DMPLEX_INTERPOLATED_PARTIAL, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Not for partially interpolated meshes"); 3525827c4036SVaclav Hapla if (interpolated) { 35269566063dSJacob Faibussowitsch PetscCall(DMPlexCreateSubmesh_Interpolated(dm, vertexLabel, value, markedFaces, *subdm)); 3527e6ccafaeSMatthew G Knepley } else { 35289566063dSJacob Faibussowitsch PetscCall(DMPlexCreateSubmesh_Uninterpolated(dm, vertexLabel, value, *subdm)); 3529e6ccafaeSMatthew G Knepley } 35305de52c6dSVaclav Hapla PetscCall(DMPlexCopy_Internal(dm, PETSC_TRUE, PETSC_TRUE, *subdm)); 3531e6ccafaeSMatthew G Knepley PetscFunctionReturn(0); 3532e6ccafaeSMatthew G Knepley } 3533e6ccafaeSMatthew G Knepley 35349371c9d4SSatish Balay static PetscErrorCode DMPlexCreateCohesiveSubmesh_Uninterpolated(DM dm, PetscBool hasLagrange, const char label[], PetscInt value, DM subdm) { 3535766ab985SMatthew G. Knepley MPI_Comm comm; 3536766ab985SMatthew G. Knepley DMLabel subpointMap; 3537766ab985SMatthew G. Knepley IS subvertexIS; 3538766ab985SMatthew G. Knepley const PetscInt *subVertices; 3539fed694aaSMatthew G. Knepley PetscInt numSubVertices, firstSubVertex, numSubCells, *subCells = NULL; 3540766ab985SMatthew G. Knepley PetscInt *subface, maxConeSize, numSubFaces, firstSubFace, newFacePoint, nFV; 3541412e9a14SMatthew G. Knepley PetscInt c, f; 3542766ab985SMatthew G. Knepley 3543766ab985SMatthew G. Knepley PetscFunctionBegin; 35449566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)dm, &comm)); 3545766ab985SMatthew G. Knepley /* Create subpointMap which marks the submesh */ 35469566063dSJacob Faibussowitsch PetscCall(DMLabelCreate(PETSC_COMM_SELF, "subpoint_map", &subpointMap)); 35479566063dSJacob Faibussowitsch PetscCall(DMPlexSetSubpointMap(subdm, subpointMap)); 35489566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&subpointMap)); 35499566063dSJacob Faibussowitsch PetscCall(DMPlexMarkCohesiveSubmesh_Uninterpolated(dm, hasLagrange, label, value, subpointMap, &numSubFaces, &nFV, &subCells, subdm)); 3550766ab985SMatthew G. Knepley /* Setup chart */ 35519566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumSize(subpointMap, 0, &numSubVertices)); 35529566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumSize(subpointMap, 2, &numSubCells)); 35539566063dSJacob Faibussowitsch PetscCall(DMPlexSetChart(subdm, 0, numSubCells + numSubFaces + numSubVertices)); 35549566063dSJacob Faibussowitsch PetscCall(DMPlexSetVTKCellHeight(subdm, 1)); 3555766ab985SMatthew G. Knepley /* Set cone sizes */ 3556766ab985SMatthew G. Knepley firstSubVertex = numSubCells; 3557766ab985SMatthew G. Knepley firstSubFace = numSubCells + numSubVertices; 3558766ab985SMatthew G. Knepley newFacePoint = firstSubFace; 35599566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(subpointMap, 0, &subvertexIS)); 35609566063dSJacob Faibussowitsch if (subvertexIS) PetscCall(ISGetIndices(subvertexIS, &subVertices)); 356148a46eb9SPierre Jolivet for (c = 0; c < numSubCells; ++c) PetscCall(DMPlexSetConeSize(subdm, c, 1)); 356248a46eb9SPierre Jolivet for (f = firstSubFace; f < firstSubFace + numSubFaces; ++f) PetscCall(DMPlexSetConeSize(subdm, f, nFV)); 35639566063dSJacob Faibussowitsch PetscCall(DMSetUp(subdm)); 3564766ab985SMatthew G. Knepley /* Create face cones */ 35659566063dSJacob Faibussowitsch PetscCall(DMPlexGetMaxSizes(dm, &maxConeSize, NULL)); 35669566063dSJacob Faibussowitsch PetscCall(DMGetWorkArray(subdm, maxConeSize, MPIU_INT, (void **)&subface)); 3567766ab985SMatthew G. Knepley for (c = 0; c < numSubCells; ++c) { 3568766ab985SMatthew G. Knepley const PetscInt cell = subCells[c]; 3569766ab985SMatthew G. Knepley const PetscInt subcell = c; 357087feddfdSMatthew G. Knepley const PetscInt *cone, *cells; 3571412e9a14SMatthew G. Knepley PetscBool isHybrid; 357287feddfdSMatthew G. Knepley PetscInt numCells, subVertex, p, v; 3573766ab985SMatthew G. Knepley 35749566063dSJacob Faibussowitsch PetscCall(DMPlexCellIsHybrid_Internal(dm, cell, &isHybrid)); 3575412e9a14SMatthew G. Knepley if (!isHybrid) continue; 35769566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, cell, &cone)); 357787feddfdSMatthew G. Knepley for (v = 0; v < nFV; ++v) { 35789566063dSJacob Faibussowitsch PetscCall(PetscFindInt(cone[v], numSubVertices, subVertices, &subVertex)); 357987feddfdSMatthew G. Knepley subface[v] = firstSubVertex + subVertex; 358087feddfdSMatthew G. Knepley } 35819566063dSJacob Faibussowitsch PetscCall(DMPlexSetCone(subdm, newFacePoint, subface)); 35829566063dSJacob Faibussowitsch PetscCall(DMPlexSetCone(subdm, subcell, &newFacePoint)); 35839566063dSJacob Faibussowitsch PetscCall(DMPlexGetJoin(dm, nFV, cone, &numCells, &cells)); 358427234c99SMatthew G. Knepley /* Not true in parallel 358508401ef6SPierre Jolivet PetscCheck(numCells == 2,PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Cohesive cells should separate two cells"); */ 358687feddfdSMatthew G. Knepley for (p = 0; p < numCells; ++p) { 358787feddfdSMatthew G. Knepley PetscInt negsubcell; 3588412e9a14SMatthew G. Knepley PetscBool isHybrid; 3589766ab985SMatthew G. Knepley 35909566063dSJacob Faibussowitsch PetscCall(DMPlexCellIsHybrid_Internal(dm, cells[p], &isHybrid)); 3591412e9a14SMatthew G. Knepley if (isHybrid) continue; 359287feddfdSMatthew G. Knepley /* I know this is a crap search */ 359387feddfdSMatthew G. Knepley for (negsubcell = 0; negsubcell < numSubCells; ++negsubcell) { 359487feddfdSMatthew G. Knepley if (subCells[negsubcell] == cells[p]) break; 3595766ab985SMatthew G. Knepley } 359663a3b9bcSJacob Faibussowitsch PetscCheck(negsubcell != numSubCells, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Could not find negative face neighbor for cohesive cell %" PetscInt_FMT, cell); 35979566063dSJacob Faibussowitsch PetscCall(DMPlexSetCone(subdm, negsubcell, &newFacePoint)); 3598766ab985SMatthew G. Knepley } 35999566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreJoin(dm, nFV, cone, &numCells, &cells)); 360087feddfdSMatthew G. Knepley ++newFacePoint; 3601766ab985SMatthew G. Knepley } 36029566063dSJacob Faibussowitsch PetscCall(DMRestoreWorkArray(subdm, maxConeSize, MPIU_INT, (void **)&subface)); 36039566063dSJacob Faibussowitsch PetscCall(DMPlexSymmetrize(subdm)); 36049566063dSJacob Faibussowitsch PetscCall(DMPlexStratify(subdm)); 3605766ab985SMatthew G. Knepley /* Build coordinates */ 3606766ab985SMatthew G. Knepley { 3607766ab985SMatthew G. Knepley PetscSection coordSection, subCoordSection; 3608766ab985SMatthew G. Knepley Vec coordinates, subCoordinates; 3609766ab985SMatthew G. Knepley PetscScalar *coords, *subCoords; 3610c0e8cf5fSMatthew G. Knepley PetscInt cdim, numComp, coordSize, v; 361124640c55SToby Isaac const char *name; 3612766ab985SMatthew G. Knepley 36139566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDim(dm, &cdim)); 36149566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateSection(dm, &coordSection)); 36159566063dSJacob Faibussowitsch PetscCall(DMGetCoordinatesLocal(dm, &coordinates)); 36169566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateSection(subdm, &subCoordSection)); 36179566063dSJacob Faibussowitsch PetscCall(PetscSectionSetNumFields(subCoordSection, 1)); 36189566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldComponents(coordSection, 0, &numComp)); 36199566063dSJacob Faibussowitsch PetscCall(PetscSectionSetFieldComponents(subCoordSection, 0, numComp)); 36209566063dSJacob Faibussowitsch PetscCall(PetscSectionSetChart(subCoordSection, firstSubVertex, firstSubVertex + numSubVertices)); 3621766ab985SMatthew G. Knepley for (v = 0; v < numSubVertices; ++v) { 3622766ab985SMatthew G. Knepley const PetscInt vertex = subVertices[v]; 3623766ab985SMatthew G. Knepley const PetscInt subvertex = firstSubVertex + v; 3624766ab985SMatthew G. Knepley PetscInt dof; 3625766ab985SMatthew G. Knepley 36269566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(coordSection, vertex, &dof)); 36279566063dSJacob Faibussowitsch PetscCall(PetscSectionSetDof(subCoordSection, subvertex, dof)); 36289566063dSJacob Faibussowitsch PetscCall(PetscSectionSetFieldDof(subCoordSection, subvertex, 0, dof)); 3629766ab985SMatthew G. Knepley } 36309566063dSJacob Faibussowitsch PetscCall(PetscSectionSetUp(subCoordSection)); 36319566063dSJacob Faibussowitsch PetscCall(PetscSectionGetStorageSize(subCoordSection, &coordSize)); 36329566063dSJacob Faibussowitsch PetscCall(VecCreate(PETSC_COMM_SELF, &subCoordinates)); 36339566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)coordinates, &name)); 36349566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)subCoordinates, name)); 36359566063dSJacob Faibussowitsch PetscCall(VecSetSizes(subCoordinates, coordSize, PETSC_DETERMINE)); 36369566063dSJacob Faibussowitsch PetscCall(VecSetBlockSize(subCoordinates, cdim)); 36379566063dSJacob Faibussowitsch PetscCall(VecSetType(subCoordinates, VECSTANDARD)); 36389566063dSJacob Faibussowitsch PetscCall(VecGetArray(coordinates, &coords)); 36399566063dSJacob Faibussowitsch PetscCall(VecGetArray(subCoordinates, &subCoords)); 3640766ab985SMatthew G. Knepley for (v = 0; v < numSubVertices; ++v) { 3641766ab985SMatthew G. Knepley const PetscInt vertex = subVertices[v]; 3642766ab985SMatthew G. Knepley const PetscInt subvertex = firstSubVertex + v; 3643766ab985SMatthew G. Knepley PetscInt dof, off, sdof, soff, d; 3644766ab985SMatthew G. Knepley 36459566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(coordSection, vertex, &dof)); 36469566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(coordSection, vertex, &off)); 36479566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(subCoordSection, subvertex, &sdof)); 36489566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(subCoordSection, subvertex, &soff)); 364963a3b9bcSJacob Faibussowitsch PetscCheck(dof == sdof, comm, PETSC_ERR_PLIB, "Coordinate dimension %" PetscInt_FMT " on subvertex %" PetscInt_FMT ", vertex %" PetscInt_FMT " should be %" PetscInt_FMT, sdof, subvertex, vertex, dof); 3650766ab985SMatthew G. Knepley for (d = 0; d < dof; ++d) subCoords[soff + d] = coords[off + d]; 3651766ab985SMatthew G. Knepley } 36529566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(coordinates, &coords)); 36539566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(subCoordinates, &subCoords)); 36549566063dSJacob Faibussowitsch PetscCall(DMSetCoordinatesLocal(subdm, subCoordinates)); 36559566063dSJacob Faibussowitsch PetscCall(VecDestroy(&subCoordinates)); 3656766ab985SMatthew G. Knepley } 3657aca35d17SMatthew G. Knepley /* Build SF */ 3658aca35d17SMatthew G. Knepley CHKMEMQ; 3659aca35d17SMatthew G. Knepley { 3660aca35d17SMatthew G. Knepley PetscSF sfPoint, sfPointSub; 3661aca35d17SMatthew G. Knepley const PetscSFNode *remotePoints; 3662bdcf2095SMatthew G. Knepley PetscSFNode *sremotePoints, *newLocalPoints, *newOwners; 3663aca35d17SMatthew G. Knepley const PetscInt *localPoints; 3664bdcf2095SMatthew G. Knepley PetscInt *slocalPoints; 366549c26ae4SMatthew G. Knepley PetscInt numRoots, numLeaves, numSubRoots = numSubCells + numSubFaces + numSubVertices, numSubLeaves = 0, l, sl, ll, pStart, pEnd, p, vStart, vEnd; 3666bdcf2095SMatthew G. Knepley PetscMPIInt rank; 3667aca35d17SMatthew G. Knepley 36689566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)dm), &rank)); 36699566063dSJacob Faibussowitsch PetscCall(DMGetPointSF(dm, &sfPoint)); 36709566063dSJacob Faibussowitsch PetscCall(DMGetPointSF(subdm, &sfPointSub)); 36719566063dSJacob Faibussowitsch PetscCall(DMPlexGetChart(dm, &pStart, &pEnd)); 36729566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthStratum(dm, 0, &vStart, &vEnd)); 36739566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(sfPoint, &numRoots, &numLeaves, &localPoints, &remotePoints)); 3674aca35d17SMatthew G. Knepley if (numRoots >= 0) { 3675aca35d17SMatthew G. Knepley /* Only vertices should be shared */ 36769566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(pEnd - pStart, &newLocalPoints, numRoots, &newOwners)); 3677bdcf2095SMatthew G. Knepley for (p = 0; p < pEnd - pStart; ++p) { 3678bdcf2095SMatthew G. Knepley newLocalPoints[p].rank = -2; 3679bdcf2095SMatthew G. Knepley newLocalPoints[p].index = -2; 3680bdcf2095SMatthew G. Knepley } 36819e0823b2SMatthew G. Knepley /* Set subleaves */ 3682aca35d17SMatthew G. Knepley for (l = 0; l < numLeaves; ++l) { 3683aca35d17SMatthew G. Knepley const PetscInt point = localPoints[l]; 3684bdcf2095SMatthew G. Knepley const PetscInt subPoint = DMPlexFilterPoint_Internal(point, firstSubVertex, numSubVertices, subVertices); 3685aca35d17SMatthew G. Knepley 368663a3b9bcSJacob Faibussowitsch PetscCheck(!(point < vStart) || !(point >= vEnd), PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Should not be mapping anything but vertices, %" PetscInt_FMT, point); 3687bdcf2095SMatthew G. Knepley if (subPoint < 0) continue; 3688bdcf2095SMatthew G. Knepley newLocalPoints[point - pStart].rank = rank; 3689bdcf2095SMatthew G. Knepley newLocalPoints[point - pStart].index = subPoint; 3690bdcf2095SMatthew G. Knepley ++numSubLeaves; 3691aca35d17SMatthew G. Knepley } 36929e0823b2SMatthew G. Knepley /* Must put in owned subpoints */ 36939e0823b2SMatthew G. Knepley for (p = pStart; p < pEnd; ++p) { 36949e0823b2SMatthew G. Knepley const PetscInt subPoint = DMPlexFilterPoint_Internal(p, firstSubVertex, numSubVertices, subVertices); 36959e0823b2SMatthew G. Knepley 36969e0823b2SMatthew G. Knepley if (subPoint < 0) { 36979e0823b2SMatthew G. Knepley newOwners[p - pStart].rank = -3; 36989e0823b2SMatthew G. Knepley newOwners[p - pStart].index = -3; 36999e0823b2SMatthew G. Knepley } else { 37009e0823b2SMatthew G. Knepley newOwners[p - pStart].rank = rank; 37019e0823b2SMatthew G. Knepley newOwners[p - pStart].index = subPoint; 37029e0823b2SMatthew G. Knepley } 3703bdcf2095SMatthew G. Knepley } 37049566063dSJacob Faibussowitsch PetscCall(PetscSFReduceBegin(sfPoint, MPIU_2INT, newLocalPoints, newOwners, MPI_MAXLOC)); 37059566063dSJacob Faibussowitsch PetscCall(PetscSFReduceEnd(sfPoint, MPIU_2INT, newLocalPoints, newOwners, MPI_MAXLOC)); 37069566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(sfPoint, MPIU_2INT, newOwners, newLocalPoints, MPI_REPLACE)); 37079566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(sfPoint, MPIU_2INT, newOwners, newLocalPoints, MPI_REPLACE)); 37089566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(numSubLeaves, &slocalPoints)); 37099566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(numSubLeaves, &sremotePoints)); 371049c26ae4SMatthew G. Knepley for (l = 0, sl = 0, ll = 0; l < numLeaves; ++l) { 3711bdcf2095SMatthew G. Knepley const PetscInt point = localPoints[l]; 3712bdcf2095SMatthew G. Knepley const PetscInt subPoint = DMPlexFilterPoint_Internal(point, firstSubVertex, numSubVertices, subVertices); 3713aca35d17SMatthew G. Knepley 3714aca35d17SMatthew G. Knepley if (subPoint < 0) continue; 37159371c9d4SSatish Balay if (newLocalPoints[point].rank == rank) { 37169371c9d4SSatish Balay ++ll; 37179371c9d4SSatish Balay continue; 37189371c9d4SSatish Balay } 3719aca35d17SMatthew G. Knepley slocalPoints[sl] = subPoint; 3720bdcf2095SMatthew G. Knepley sremotePoints[sl].rank = newLocalPoints[point].rank; 3721bdcf2095SMatthew G. Knepley sremotePoints[sl].index = newLocalPoints[point].index; 372263a3b9bcSJacob Faibussowitsch PetscCheck(sremotePoints[sl].rank >= 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid remote rank for local point %" PetscInt_FMT, point); 372363a3b9bcSJacob Faibussowitsch PetscCheck(sremotePoints[sl].index >= 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid remote subpoint for local point %" PetscInt_FMT, point); 3724aca35d17SMatthew G. Knepley ++sl; 3725aca35d17SMatthew G. Knepley } 37269566063dSJacob Faibussowitsch PetscCall(PetscFree2(newLocalPoints, newOwners)); 37271dca8a05SBarry Smith PetscCheck(sl + ll == numSubLeaves, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Mismatch in number of subleaves %" PetscInt_FMT " + %" PetscInt_FMT " != %" PetscInt_FMT, sl, ll, numSubLeaves); 37289566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(sfPointSub, numSubRoots, sl, slocalPoints, PETSC_OWN_POINTER, sremotePoints, PETSC_OWN_POINTER)); 3729aca35d17SMatthew G. Knepley } 3730aca35d17SMatthew G. Knepley } 3731aca35d17SMatthew G. Knepley CHKMEMQ; 3732766ab985SMatthew G. Knepley /* Cleanup */ 37339566063dSJacob Faibussowitsch if (subvertexIS) PetscCall(ISRestoreIndices(subvertexIS, &subVertices)); 37349566063dSJacob Faibussowitsch PetscCall(ISDestroy(&subvertexIS)); 37359566063dSJacob Faibussowitsch PetscCall(PetscFree(subCells)); 3736766ab985SMatthew G. Knepley PetscFunctionReturn(0); 3737766ab985SMatthew G. Knepley } 3738766ab985SMatthew G. Knepley 37399371c9d4SSatish Balay static PetscErrorCode DMPlexCreateCohesiveSubmesh_Interpolated(DM dm, const char labelname[], PetscInt value, DM subdm) { 37403982b651SMatthew G. Knepley DMLabel label = NULL; 3741766ab985SMatthew G. Knepley 3742766ab985SMatthew G. Knepley PetscFunctionBegin; 37439566063dSJacob Faibussowitsch if (labelname) PetscCall(DMGetLabel(dm, labelname, &label)); 37449566063dSJacob Faibussowitsch PetscCall(DMPlexCreateSubmeshGeneric_Interpolated(dm, label, value, PETSC_FALSE, PETSC_TRUE, 1, subdm)); 3745766ab985SMatthew G. Knepley PetscFunctionReturn(0); 3746766ab985SMatthew G. Knepley } 3747766ab985SMatthew G. Knepley 3748c08575a3SMatthew G. Knepley /*@C 37497d2fefb6SMatthew G. Knepley DMPlexCreateCohesiveSubmesh - Extract from a mesh with cohesive cells the hypersurface defined by one face of the cells. Optionally, a Label can be given to restrict the cells. 3750766ab985SMatthew G. Knepley 3751766ab985SMatthew G. Knepley Input Parameters: 3752766ab985SMatthew G. Knepley + dm - The original mesh 375327c04023SMatthew G. Knepley . hasLagrange - The mesh has Lagrange unknowns in the cohesive cells 37547afc1a8bSJed Brown . label - A label name, or NULL 375527c04023SMatthew G. Knepley - value - A label value 3756766ab985SMatthew G. Knepley 3757766ab985SMatthew G. Knepley Output Parameter: 3758766ab985SMatthew G. Knepley . subdm - The surface mesh 3759766ab985SMatthew G. Knepley 3760766ab985SMatthew G. Knepley Note: This function produces a DMLabel mapping original points in the submesh to their depth. This can be obtained using DMPlexGetSubpointMap(). 3761766ab985SMatthew G. Knepley 3762766ab985SMatthew G. Knepley Level: developer 3763766ab985SMatthew G. Knepley 3764db781477SPatrick Sanan .seealso: `DMPlexGetSubpointMap()`, `DMPlexCreateSubmesh()` 3765c08575a3SMatthew G. Knepley @*/ 37669371c9d4SSatish Balay PetscErrorCode DMPlexCreateCohesiveSubmesh(DM dm, PetscBool hasLagrange, const char label[], PetscInt value, DM *subdm) { 3767c0e8cf5fSMatthew G. Knepley PetscInt dim, cdim, depth; 3768766ab985SMatthew G. Knepley 3769766ab985SMatthew G. Knepley PetscFunctionBegin; 3770766ab985SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 377127c04023SMatthew G. Knepley PetscValidPointer(subdm, 5); 37729566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 37739566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepth(dm, &depth)); 37749566063dSJacob Faibussowitsch PetscCall(DMCreate(PetscObjectComm((PetscObject)dm), subdm)); 37759566063dSJacob Faibussowitsch PetscCall(DMSetType(*subdm, DMPLEX)); 37769566063dSJacob Faibussowitsch PetscCall(DMSetDimension(*subdm, dim - 1)); 37779566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDim(dm, &cdim)); 37789566063dSJacob Faibussowitsch PetscCall(DMSetCoordinateDim(*subdm, cdim)); 3779766ab985SMatthew G. Knepley if (depth == dim) { 37809566063dSJacob Faibussowitsch PetscCall(DMPlexCreateCohesiveSubmesh_Interpolated(dm, label, value, *subdm)); 3781766ab985SMatthew G. Knepley } else { 37829566063dSJacob Faibussowitsch PetscCall(DMPlexCreateCohesiveSubmesh_Uninterpolated(dm, hasLagrange, label, value, *subdm)); 3783e6ccafaeSMatthew G Knepley } 37845de52c6dSVaclav Hapla PetscCall(DMPlexCopy_Internal(dm, PETSC_TRUE, PETSC_TRUE, *subdm)); 3785e6ccafaeSMatthew G Knepley PetscFunctionReturn(0); 3786e6ccafaeSMatthew G Knepley } 3787e6ccafaeSMatthew G Knepley 3788bec263e5SMatthew G. Knepley /*@ 3789bec263e5SMatthew G. Knepley DMPlexFilter - Extract a subset of mesh cells defined by a label as a separate mesh 3790bec263e5SMatthew G. Knepley 3791bec263e5SMatthew G. Knepley Input Parameters: 3792bec263e5SMatthew G. Knepley + dm - The original mesh 3793bec263e5SMatthew G. Knepley . cellLabel - The DMLabel marking cells contained in the new mesh 3794bec263e5SMatthew G. Knepley - value - The label value to use 3795bec263e5SMatthew G. Knepley 3796bec263e5SMatthew G. Knepley Output Parameter: 3797bec263e5SMatthew G. Knepley . subdm - The new mesh 3798bec263e5SMatthew G. Knepley 3799*dd05d810SMatthew G. Knepley Notes: 3800*dd05d810SMatthew G. Knepley This function produces a `DMLabel` mapping original points in the submesh to their depth. This can be obtained using `DMPlexGetSubpointMap()`. 3801bec263e5SMatthew G. Knepley 3802bec263e5SMatthew G. Knepley Level: developer 3803bec263e5SMatthew G. Knepley 3804*dd05d810SMatthew G. Knepley .seealso: `DMPlexGetSubpointMap()`, `DMGetLabel()`, `DMLabelSetValue()`, `DMPlexCreateSubmesh()` 3805bec263e5SMatthew G. Knepley @*/ 38069371c9d4SSatish Balay PetscErrorCode DMPlexFilter(DM dm, DMLabel cellLabel, PetscInt value, DM *subdm) { 3807bec263e5SMatthew G. Knepley PetscInt dim; 3808bec263e5SMatthew G. Knepley 3809bec263e5SMatthew G. Knepley PetscFunctionBegin; 3810bec263e5SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 3811064a246eSJacob Faibussowitsch PetscValidPointer(subdm, 4); 38129566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 38139566063dSJacob Faibussowitsch PetscCall(DMCreate(PetscObjectComm((PetscObject)dm), subdm)); 38149566063dSJacob Faibussowitsch PetscCall(DMSetType(*subdm, DMPLEX)); 3815bec263e5SMatthew G. Knepley /* Extract submesh in place, could be empty on some procs, could have inconsistency if procs do not both extract a shared cell */ 38169566063dSJacob Faibussowitsch PetscCall(DMPlexCreateSubmeshGeneric_Interpolated(dm, cellLabel, value, PETSC_FALSE, PETSC_FALSE, 0, *subdm)); 38175de52c6dSVaclav Hapla PetscCall(DMPlexCopy_Internal(dm, PETSC_TRUE, PETSC_TRUE, *subdm)); 3818bec263e5SMatthew G. Knepley PetscFunctionReturn(0); 3819bec263e5SMatthew G. Knepley } 3820bec263e5SMatthew G. Knepley 382164beef6dSMatthew G. Knepley /*@ 382264beef6dSMatthew G. Knepley DMPlexGetSubpointMap - Returns a DMLabel with point dimension as values 382364beef6dSMatthew G. Knepley 382464beef6dSMatthew G. Knepley Input Parameter: 382564beef6dSMatthew G. Knepley . dm - The submesh DM 382664beef6dSMatthew G. Knepley 382764beef6dSMatthew G. Knepley Output Parameter: 382864beef6dSMatthew G. Knepley . subpointMap - The DMLabel of all the points from the original mesh in this submesh, or NULL if this is not a submesh 382964beef6dSMatthew G. Knepley 383064beef6dSMatthew G. Knepley Level: developer 383164beef6dSMatthew G. Knepley 3832db781477SPatrick Sanan .seealso: `DMPlexCreateSubmesh()`, `DMPlexGetSubpointIS()` 383364beef6dSMatthew G. Knepley @*/ 38349371c9d4SSatish Balay PetscErrorCode DMPlexGetSubpointMap(DM dm, DMLabel *subpointMap) { 3835e6ccafaeSMatthew G Knepley PetscFunctionBegin; 3836e6ccafaeSMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 3837e6ccafaeSMatthew G Knepley PetscValidPointer(subpointMap, 2); 383865663942SMatthew G. Knepley *subpointMap = ((DM_Plex *)dm->data)->subpointMap; 3839e6ccafaeSMatthew G Knepley PetscFunctionReturn(0); 3840e6ccafaeSMatthew G Knepley } 3841e6ccafaeSMatthew G Knepley 3842c08575a3SMatthew G. Knepley /*@ 3843c08575a3SMatthew G. Knepley DMPlexSetSubpointMap - Sets the DMLabel with point dimension as values 3844c08575a3SMatthew G. Knepley 3845c08575a3SMatthew G. Knepley Input Parameters: 3846c08575a3SMatthew G. Knepley + dm - The submesh DM 3847c08575a3SMatthew G. Knepley - subpointMap - The DMLabel of all the points from the original mesh in this submesh 3848c08575a3SMatthew G. Knepley 3849c08575a3SMatthew G. Knepley Note: Should normally not be called by the user, since it is set in DMPlexCreateSubmesh() 3850c08575a3SMatthew G. Knepley 3851c08575a3SMatthew G. Knepley Level: developer 3852c08575a3SMatthew G. Knepley 3853db781477SPatrick Sanan .seealso: `DMPlexCreateSubmesh()`, `DMPlexGetSubpointIS()` 3854c08575a3SMatthew G. Knepley @*/ 38559371c9d4SSatish Balay PetscErrorCode DMPlexSetSubpointMap(DM dm, DMLabel subpointMap) { 3856e6ccafaeSMatthew G Knepley DM_Plex *mesh = (DM_Plex *)dm->data; 3857285d324eSMatthew G. Knepley DMLabel tmp; 3858e6ccafaeSMatthew G Knepley 3859e6ccafaeSMatthew G Knepley PetscFunctionBegin; 3860e6ccafaeSMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 3861285d324eSMatthew G. Knepley tmp = mesh->subpointMap; 3862e6ccafaeSMatthew G Knepley mesh->subpointMap = subpointMap; 38639566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)mesh->subpointMap)); 38649566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&tmp)); 3865e6ccafaeSMatthew G Knepley PetscFunctionReturn(0); 3866e6ccafaeSMatthew G Knepley } 3867e6ccafaeSMatthew G Knepley 38689371c9d4SSatish Balay static PetscErrorCode DMPlexCreateSubpointIS_Internal(DM dm, IS *subpointIS) { 386997d8846cSMatthew Knepley DMLabel spmap; 387097d8846cSMatthew Knepley PetscInt depth, d; 387197d8846cSMatthew Knepley 387297d8846cSMatthew Knepley PetscFunctionBegin; 38739566063dSJacob Faibussowitsch PetscCall(DMPlexGetSubpointMap(dm, &spmap)); 38749566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepth(dm, &depth)); 387597d8846cSMatthew Knepley if (spmap && depth >= 0) { 387697d8846cSMatthew Knepley DM_Plex *mesh = (DM_Plex *)dm->data; 387797d8846cSMatthew Knepley PetscInt *points, *depths; 387897d8846cSMatthew Knepley PetscInt pStart, pEnd, p, off; 387997d8846cSMatthew Knepley 38809566063dSJacob Faibussowitsch PetscCall(DMPlexGetChart(dm, &pStart, &pEnd)); 388163a3b9bcSJacob Faibussowitsch PetscCheck(!pStart, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Submeshes must start the point numbering at 0, not %" PetscInt_FMT, pStart); 38829566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(pEnd, &points)); 38839566063dSJacob Faibussowitsch PetscCall(DMGetWorkArray(dm, depth + 1, MPIU_INT, &depths)); 388497d8846cSMatthew Knepley depths[0] = depth; 388597d8846cSMatthew Knepley depths[1] = 0; 3886ad540459SPierre Jolivet for (d = 2; d <= depth; ++d) depths[d] = depth + 1 - d; 388797d8846cSMatthew Knepley for (d = 0, off = 0; d <= depth; ++d) { 388897d8846cSMatthew Knepley const PetscInt dep = depths[d]; 388997d8846cSMatthew Knepley PetscInt depStart, depEnd, n; 389097d8846cSMatthew Knepley 38919566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthStratum(dm, dep, &depStart, &depEnd)); 38929566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumSize(spmap, dep, &n)); 389397d8846cSMatthew Knepley if (((d < 2) && (depth > 1)) || (d == 1)) { /* Only check vertices and cells for now since the map is broken for others */ 389463a3b9bcSJacob Faibussowitsch PetscCheck(n == depEnd - depStart, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "The number of mapped submesh points %" PetscInt_FMT " at depth %" PetscInt_FMT " should be %" PetscInt_FMT, n, dep, depEnd - depStart); 389597d8846cSMatthew Knepley } else { 389697d8846cSMatthew Knepley if (!n) { 389797d8846cSMatthew Knepley if (d == 0) { 389897d8846cSMatthew Knepley /* Missing cells */ 389997d8846cSMatthew Knepley for (p = 0; p < depEnd - depStart; ++p, ++off) points[off] = -1; 390097d8846cSMatthew Knepley } else { 390197d8846cSMatthew Knepley /* Missing faces */ 390297d8846cSMatthew Knepley for (p = 0; p < depEnd - depStart; ++p, ++off) points[off] = PETSC_MAX_INT; 390397d8846cSMatthew Knepley } 390497d8846cSMatthew Knepley } 390597d8846cSMatthew Knepley } 390697d8846cSMatthew Knepley if (n) { 390797d8846cSMatthew Knepley IS is; 390897d8846cSMatthew Knepley const PetscInt *opoints; 390997d8846cSMatthew Knepley 39109566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(spmap, dep, &is)); 39119566063dSJacob Faibussowitsch PetscCall(ISGetIndices(is, &opoints)); 391297d8846cSMatthew Knepley for (p = 0; p < n; ++p, ++off) points[off] = opoints[p]; 39139566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(is, &opoints)); 39149566063dSJacob Faibussowitsch PetscCall(ISDestroy(&is)); 391597d8846cSMatthew Knepley } 391697d8846cSMatthew Knepley } 39179566063dSJacob Faibussowitsch PetscCall(DMRestoreWorkArray(dm, depth + 1, MPIU_INT, &depths)); 391863a3b9bcSJacob Faibussowitsch PetscCheck(off == pEnd, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "The number of mapped submesh points %" PetscInt_FMT " should be %" PetscInt_FMT, off, pEnd); 39199566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, pEnd, points, PETSC_OWN_POINTER, subpointIS)); 39209566063dSJacob Faibussowitsch PetscCall(PetscObjectStateGet((PetscObject)spmap, &mesh->subpointState)); 392197d8846cSMatthew Knepley } 392297d8846cSMatthew Knepley PetscFunctionReturn(0); 392397d8846cSMatthew Knepley } 392497d8846cSMatthew Knepley 392564beef6dSMatthew G. Knepley /*@ 392697d8846cSMatthew Knepley DMPlexGetSubpointIS - Returns an IS covering the entire subdm chart with the original points as data 3927e6ccafaeSMatthew G Knepley 3928e6ccafaeSMatthew G Knepley Input Parameter: 3929e6ccafaeSMatthew G Knepley . dm - The submesh DM 3930e6ccafaeSMatthew G Knepley 3931e6ccafaeSMatthew G Knepley Output Parameter: 39320298fd71SBarry Smith . subpointIS - The IS of all the points from the original mesh in this submesh, or NULL if this is not a submesh 3933e6ccafaeSMatthew G Knepley 39343982b651SMatthew G. Knepley Note: This IS is guaranteed to be sorted by the construction of the submesh 393564beef6dSMatthew G. Knepley 393664beef6dSMatthew G. Knepley Level: developer 393764beef6dSMatthew G. Knepley 3938db781477SPatrick Sanan .seealso: `DMPlexCreateSubmesh()`, `DMPlexGetSubpointMap()` 393964beef6dSMatthew G. Knepley @*/ 39409371c9d4SSatish Balay PetscErrorCode DMPlexGetSubpointIS(DM dm, IS *subpointIS) { 394197d8846cSMatthew Knepley DM_Plex *mesh = (DM_Plex *)dm->data; 394297d8846cSMatthew Knepley DMLabel spmap; 394397d8846cSMatthew Knepley PetscObjectState state; 3944e6ccafaeSMatthew G Knepley 3945e6ccafaeSMatthew G Knepley PetscFunctionBegin; 3946e6ccafaeSMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 3947e6ccafaeSMatthew G Knepley PetscValidPointer(subpointIS, 2); 39489566063dSJacob Faibussowitsch PetscCall(DMPlexGetSubpointMap(dm, &spmap)); 39499566063dSJacob Faibussowitsch PetscCall(PetscObjectStateGet((PetscObject)spmap, &state)); 39509566063dSJacob Faibussowitsch if (state != mesh->subpointState || !mesh->subpointIS) PetscCall(DMPlexCreateSubpointIS_Internal(dm, &mesh->subpointIS)); 395197d8846cSMatthew Knepley *subpointIS = mesh->subpointIS; 3952e6ccafaeSMatthew G Knepley PetscFunctionReturn(0); 3953e6ccafaeSMatthew G Knepley } 3954559a1558SMatthew G. Knepley 3955559a1558SMatthew G. Knepley /*@ 3956a6e0b375SMatthew G. Knepley DMGetEnclosureRelation - Get the relationship between dmA and dmB 3957559a1558SMatthew G. Knepley 3958559a1558SMatthew G. Knepley Input Parameters: 3959a6e0b375SMatthew G. Knepley + dmA - The first DM 3960a6e0b375SMatthew G. Knepley - dmB - The second DM 3961559a1558SMatthew G. Knepley 3962559a1558SMatthew G. Knepley Output Parameter: 3963a6e0b375SMatthew G. Knepley . rel - The relation of dmA to dmB 3964559a1558SMatthew G. Knepley 3965a6e0b375SMatthew G. Knepley Level: intermediate 3966559a1558SMatthew G. Knepley 3967db781477SPatrick Sanan .seealso: `DMGetEnclosurePoint()` 3968559a1558SMatthew G. Knepley @*/ 39699371c9d4SSatish Balay PetscErrorCode DMGetEnclosureRelation(DM dmA, DM dmB, DMEnclosureType *rel) { 3970a6e0b375SMatthew G. Knepley DM plexA, plexB, sdm; 3971559a1558SMatthew G. Knepley DMLabel spmap; 3972a6e0b375SMatthew G. Knepley PetscInt pStartA, pEndA, pStartB, pEndB, NpA, NpB; 3973559a1558SMatthew G. Knepley 397444171101SMatthew G. Knepley PetscFunctionBegin; 3975a6e0b375SMatthew G. Knepley PetscValidPointer(rel, 3); 3976a6e0b375SMatthew G. Knepley *rel = DM_ENC_NONE; 3977a6e0b375SMatthew G. Knepley if (!dmA || !dmB) PetscFunctionReturn(0); 3978a6e0b375SMatthew G. Knepley PetscValidHeaderSpecific(dmA, DM_CLASSID, 1); 3979064a246eSJacob Faibussowitsch PetscValidHeaderSpecific(dmB, DM_CLASSID, 2); 39809371c9d4SSatish Balay if (dmA == dmB) { 39819371c9d4SSatish Balay *rel = DM_ENC_EQUALITY; 39829371c9d4SSatish Balay PetscFunctionReturn(0); 39839371c9d4SSatish Balay } 39849566063dSJacob Faibussowitsch PetscCall(DMConvert(dmA, DMPLEX, &plexA)); 39859566063dSJacob Faibussowitsch PetscCall(DMConvert(dmB, DMPLEX, &plexB)); 39869566063dSJacob Faibussowitsch PetscCall(DMPlexGetChart(plexA, &pStartA, &pEndA)); 39879566063dSJacob Faibussowitsch PetscCall(DMPlexGetChart(plexB, &pStartB, &pEndB)); 3988a6e0b375SMatthew G. Knepley /* Assumption 1: subDMs have smaller charts than the DMs that they originate from 3989a6e0b375SMatthew G. Knepley - The degenerate case of a subdomain which includes all of the domain on some process can be treated as equality */ 3990a6e0b375SMatthew G. Knepley if ((pStartA == pStartB) && (pEndA == pEndB)) { 3991a6e0b375SMatthew G. Knepley *rel = DM_ENC_EQUALITY; 3992a6e0b375SMatthew G. Knepley goto end; 3993559a1558SMatthew G. Knepley } 3994a6e0b375SMatthew G. Knepley NpA = pEndA - pStartA; 3995a6e0b375SMatthew G. Knepley NpB = pEndB - pStartB; 3996a6e0b375SMatthew G. Knepley if (NpA == NpB) goto end; 3997a6e0b375SMatthew G. Knepley sdm = NpA > NpB ? plexB : plexA; /* The other is the original, enclosing dm */ 39989566063dSJacob Faibussowitsch PetscCall(DMPlexGetSubpointMap(sdm, &spmap)); 3999a6e0b375SMatthew G. Knepley if (!spmap) goto end; 4000a6e0b375SMatthew G. Knepley /* TODO Check the space mapped to by subpointMap is same size as dm */ 4001a6e0b375SMatthew G. Knepley if (NpA > NpB) { 4002a6e0b375SMatthew G. Knepley *rel = DM_ENC_SUPERMESH; 4003a6e0b375SMatthew G. Knepley } else { 4004a6e0b375SMatthew G. Knepley *rel = DM_ENC_SUBMESH; 4005a6e0b375SMatthew G. Knepley } 4006a6e0b375SMatthew G. Knepley end: 40079566063dSJacob Faibussowitsch PetscCall(DMDestroy(&plexA)); 40089566063dSJacob Faibussowitsch PetscCall(DMDestroy(&plexB)); 4009559a1558SMatthew G. Knepley PetscFunctionReturn(0); 4010559a1558SMatthew G. Knepley } 401144171101SMatthew G. Knepley 401244171101SMatthew G. Knepley /*@ 4013a6e0b375SMatthew G. Knepley DMGetEnclosurePoint - Get the point pA in dmA which corresponds to the point pB in dmB 401444171101SMatthew G. Knepley 401544171101SMatthew G. Knepley Input Parameters: 4016a6e0b375SMatthew G. Knepley + dmA - The first DM 4017a6e0b375SMatthew G. Knepley . dmB - The second DM 4018a6e0b375SMatthew G. Knepley . etype - The type of enclosure relation that dmA has to dmB 4019a6e0b375SMatthew G. Knepley - pB - A point of dmB 402044171101SMatthew G. Knepley 402144171101SMatthew G. Knepley Output Parameter: 4022a6e0b375SMatthew G. Knepley . pA - The corresponding point of dmA 402344171101SMatthew G. Knepley 4024a6e0b375SMatthew G. Knepley Level: intermediate 402544171101SMatthew G. Knepley 4026db781477SPatrick Sanan .seealso: `DMGetEnclosureRelation()` 402744171101SMatthew G. Knepley @*/ 40289371c9d4SSatish Balay PetscErrorCode DMGetEnclosurePoint(DM dmA, DM dmB, DMEnclosureType etype, PetscInt pB, PetscInt *pA) { 4029a6e0b375SMatthew G. Knepley DM sdm; 4030a6e0b375SMatthew G. Knepley IS subpointIS; 4031a6e0b375SMatthew G. Knepley const PetscInt *subpoints; 4032a6e0b375SMatthew G. Knepley PetscInt numSubpoints; 403344171101SMatthew G. Knepley 403444171101SMatthew G. Knepley PetscFunctionBegin; 4035a6e0b375SMatthew G. Knepley /* TODO Cache the IS, making it look like an index */ 4036a6e0b375SMatthew G. Knepley switch (etype) { 4037a6e0b375SMatthew G. Knepley case DM_ENC_SUPERMESH: 4038a6e0b375SMatthew G. Knepley sdm = dmB; 40399566063dSJacob Faibussowitsch PetscCall(DMPlexGetSubpointIS(sdm, &subpointIS)); 40409566063dSJacob Faibussowitsch PetscCall(ISGetIndices(subpointIS, &subpoints)); 4041a6e0b375SMatthew G. Knepley *pA = subpoints[pB]; 40429566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(subpointIS, &subpoints)); 4043a6e0b375SMatthew G. Knepley break; 4044a6e0b375SMatthew G. Knepley case DM_ENC_SUBMESH: 4045a6e0b375SMatthew G. Knepley sdm = dmA; 40469566063dSJacob Faibussowitsch PetscCall(DMPlexGetSubpointIS(sdm, &subpointIS)); 40479566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(subpointIS, &numSubpoints)); 40489566063dSJacob Faibussowitsch PetscCall(ISGetIndices(subpointIS, &subpoints)); 40499566063dSJacob Faibussowitsch PetscCall(PetscFindInt(pB, numSubpoints, subpoints, pA)); 4050a6e0b375SMatthew G. Knepley if (*pA < 0) { 40519566063dSJacob Faibussowitsch PetscCall(DMViewFromOptions(dmA, NULL, "-dm_enc_A_view")); 40529566063dSJacob Faibussowitsch PetscCall(DMViewFromOptions(dmB, NULL, "-dm_enc_B_view")); 405363a3b9bcSJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Point %" PetscInt_FMT " not found in submesh", pB); 4054a6e0b375SMatthew G. Knepley } 40559566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(subpointIS, &subpoints)); 4056a6e0b375SMatthew G. Knepley break; 4057a6e0b375SMatthew G. Knepley case DM_ENC_EQUALITY: 40589371c9d4SSatish Balay case DM_ENC_NONE: *pA = pB; break; 40599371c9d4SSatish Balay case DM_ENC_UNKNOWN: { 4060a6e0b375SMatthew G. Knepley DMEnclosureType enc; 406144171101SMatthew G. Knepley 40629566063dSJacob Faibussowitsch PetscCall(DMGetEnclosureRelation(dmA, dmB, &enc)); 40639566063dSJacob Faibussowitsch PetscCall(DMGetEnclosurePoint(dmA, dmB, enc, pB, pA)); 40649371c9d4SSatish Balay } break; 406598921bdaSJacob Faibussowitsch default: SETERRQ(PetscObjectComm((PetscObject)dmA), PETSC_ERR_ARG_OUTOFRANGE, "Invalid enclosure type %d", (int)etype); 406644171101SMatthew G. Knepley } 406744171101SMatthew G. Knepley PetscFunctionReturn(0); 406844171101SMatthew G. Knepley } 4069