1af0996ceSBarry Smith #include <petsc/private/dmpleximpl.h> /*I "petscdmplex.h" I*/ 2c58f1c22SToby Isaac #include <petsc/private/dmlabelimpl.h> /*I "petscdmlabel.h" I*/ 30c312b8eSJed Brown #include <petscsf.h> 4e6ccafaeSMatthew G Knepley 5412e9a14SMatthew G. Knepley static PetscErrorCode DMPlexCellIsHybrid_Internal(DM dm, PetscInt p, PetscBool *isHybrid) 6412e9a14SMatthew G. Knepley { 7412e9a14SMatthew G. Knepley DMPolytopeType ct; 8412e9a14SMatthew G. Knepley 9412e9a14SMatthew G. Knepley PetscFunctionBegin; 109566063dSJacob Faibussowitsch PetscCall(DMPlexGetCellType(dm, p, &ct)); 11412e9a14SMatthew G. Knepley switch (ct) { 12412e9a14SMatthew G. Knepley case DM_POLYTOPE_POINT_PRISM_TENSOR: 13412e9a14SMatthew G. Knepley case DM_POLYTOPE_SEG_PRISM_TENSOR: 14412e9a14SMatthew G. Knepley case DM_POLYTOPE_TRI_PRISM_TENSOR: 15412e9a14SMatthew G. Knepley case DM_POLYTOPE_QUAD_PRISM_TENSOR: 16412e9a14SMatthew G. Knepley *isHybrid = PETSC_TRUE; 17412e9a14SMatthew G. Knepley default: *isHybrid = PETSC_FALSE; 18412e9a14SMatthew G. Knepley } 19412e9a14SMatthew G. Knepley PetscFunctionReturn(0); 20412e9a14SMatthew G. Knepley } 21412e9a14SMatthew G. Knepley 22412e9a14SMatthew G. Knepley static PetscErrorCode DMPlexGetTensorPrismBounds_Internal(DM dm, PetscInt dim, PetscInt *cStart, PetscInt *cEnd) 23412e9a14SMatthew G. Knepley { 24412e9a14SMatthew G. Knepley DMLabel ctLabel; 25412e9a14SMatthew G. Knepley 26412e9a14SMatthew G. Knepley PetscFunctionBegin; 27412e9a14SMatthew G. Knepley if (cStart) *cStart = -1; 28412e9a14SMatthew G. Knepley if (cEnd) *cEnd = -1; 299566063dSJacob Faibussowitsch PetscCall(DMPlexGetCellTypeLabel(dm, &ctLabel)); 30412e9a14SMatthew G. Knepley switch (dim) { 319566063dSJacob Faibussowitsch case 1: PetscCall(DMLabelGetStratumBounds(ctLabel, DM_POLYTOPE_POINT_PRISM_TENSOR, cStart, cEnd));break; 329566063dSJacob Faibussowitsch case 2: PetscCall(DMLabelGetStratumBounds(ctLabel, DM_POLYTOPE_SEG_PRISM_TENSOR, cStart, cEnd));break; 33412e9a14SMatthew G. Knepley case 3: 349566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumBounds(ctLabel, DM_POLYTOPE_TRI_PRISM_TENSOR, cStart, cEnd)); 359566063dSJacob Faibussowitsch if (*cStart < 0) PetscCall(DMLabelGetStratumBounds(ctLabel, DM_POLYTOPE_QUAD_PRISM_TENSOR, cStart, cEnd)); 36412e9a14SMatthew G. Knepley break; 37412e9a14SMatthew G. Knepley default: PetscFunctionReturn(0); 38412e9a14SMatthew G. Knepley } 39412e9a14SMatthew G. Knepley PetscFunctionReturn(0); 40412e9a14SMatthew G. Knepley } 41412e9a14SMatthew G. Knepley 42e752be1aSMatthew G. Knepley static PetscErrorCode DMPlexMarkBoundaryFaces_Internal(DM dm, PetscInt val, PetscInt cellHeight, DMLabel label) 4330560a7bSMatthew G. Knepley { 4430560a7bSMatthew G. Knepley PetscInt fStart, fEnd, f; 4530560a7bSMatthew G. Knepley 4630560a7bSMatthew G. Knepley PetscFunctionBegin; 479566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(dm, cellHeight+1, &fStart, &fEnd)); 4830560a7bSMatthew G. Knepley for (f = fStart; f < fEnd; ++f) { 4930560a7bSMatthew G. Knepley PetscInt supportSize; 5030560a7bSMatthew G. Knepley 519566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dm, f, &supportSize)); 52e752be1aSMatthew G. Knepley if (supportSize == 1) { 53e752be1aSMatthew G. Knepley if (val < 0) { 54e752be1aSMatthew G. Knepley PetscInt *closure = NULL; 55e752be1aSMatthew G. Knepley PetscInt clSize, cl, cval; 56e752be1aSMatthew G. Knepley 579566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(dm, f, PETSC_TRUE, &clSize, &closure)); 58e752be1aSMatthew G. Knepley for (cl = 0; cl < clSize*2; cl += 2) { 599566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, closure[cl], &cval)); 60e752be1aSMatthew G. Knepley if (cval < 0) continue; 619566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(label, f, cval)); 62e752be1aSMatthew G. Knepley break; 63e752be1aSMatthew G. Knepley } 649566063dSJacob Faibussowitsch if (cl == clSize*2) PetscCall(DMLabelSetValue(label, f, 1)); 659566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dm, f, PETSC_TRUE, &clSize, &closure)); 66e752be1aSMatthew G. Knepley } else { 679566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(label, f, val)); 68e752be1aSMatthew G. Knepley } 69e752be1aSMatthew G. Knepley } 7030560a7bSMatthew G. Knepley } 7130560a7bSMatthew G. Knepley PetscFunctionReturn(0); 7230560a7bSMatthew G. Knepley } 7330560a7bSMatthew G. Knepley 74cd0c2139SMatthew G Knepley /*@ 75cd0c2139SMatthew G Knepley DMPlexMarkBoundaryFaces - Mark all faces on the boundary 76cd0c2139SMatthew G Knepley 77cd0c2139SMatthew G Knepley Not Collective 78cd0c2139SMatthew G Knepley 79d8d19677SJose E. Roman Input Parameters: 80e752be1aSMatthew G. Knepley + dm - The original DM 81e752be1aSMatthew G. Knepley - val - The marker value, or PETSC_DETERMINE to use some value in the closure (or 1 if none are found) 82cd0c2139SMatthew G Knepley 83cd0c2139SMatthew G Knepley Output Parameter: 84e752be1aSMatthew G. Knepley . label - The DMLabel marking boundary faces with the given value 85cd0c2139SMatthew G Knepley 86cd0c2139SMatthew G Knepley Level: developer 87cd0c2139SMatthew G Knepley 88db781477SPatrick Sanan .seealso: `DMLabelCreate()`, `DMCreateLabel()` 8909f723d9SJed Brown @*/ 90e752be1aSMatthew G. Knepley PetscErrorCode DMPlexMarkBoundaryFaces(DM dm, PetscInt val, DMLabel label) 91cd0c2139SMatthew G Knepley { 92827c4036SVaclav Hapla DMPlexInterpolatedFlag flg; 93cd0c2139SMatthew G Knepley 94cd0c2139SMatthew G Knepley PetscFunctionBegin; 95827c4036SVaclav Hapla PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 969566063dSJacob Faibussowitsch PetscCall(DMPlexIsInterpolated(dm, &flg)); 9708401ef6SPierre Jolivet PetscCheck(flg == DMPLEX_INTERPOLATED_FULL,PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "DM is not fully interpolated on this rank"); 989566063dSJacob Faibussowitsch PetscCall(DMPlexMarkBoundaryFaces_Internal(dm, val, 0, label)); 99cd0c2139SMatthew G Knepley PetscFunctionReturn(0); 100cd0c2139SMatthew G Knepley } 101cd0c2139SMatthew G Knepley 102c08575a3SMatthew G. Knepley static PetscErrorCode DMPlexLabelComplete_Internal(DM dm, DMLabel label, PetscBool completeCells) 103b0bf5782SToby Isaac { 104b0bf5782SToby Isaac IS valueIS; 105ac51f24eSSander Arens PetscSF sfPoint; 106b0bf5782SToby Isaac const PetscInt *values; 107ac51f24eSSander Arens PetscInt numValues, v, cStart, cEnd, nroots; 108b0bf5782SToby Isaac 109b0bf5782SToby Isaac PetscFunctionBegin; 1109566063dSJacob Faibussowitsch PetscCall(DMLabelGetNumValues(label, &numValues)); 1119566063dSJacob Faibussowitsch PetscCall(DMLabelGetValueIS(label, &valueIS)); 1129566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(dm,0,&cStart,&cEnd)); 1139566063dSJacob Faibussowitsch PetscCall(ISGetIndices(valueIS, &values)); 114b0bf5782SToby Isaac for (v = 0; v < numValues; ++v) { 115b0bf5782SToby Isaac IS pointIS; 116b0bf5782SToby Isaac const PetscInt *points; 117b0bf5782SToby Isaac PetscInt numPoints, p; 118b0bf5782SToby Isaac 1199566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumSize(label, values[v], &numPoints)); 1209566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(label, values[v], &pointIS)); 1219566063dSJacob Faibussowitsch PetscCall(ISGetIndices(pointIS, &points)); 122b0bf5782SToby Isaac for (p = 0; p < numPoints; ++p) { 123b0bf5782SToby Isaac PetscInt q = points[p]; 124b0bf5782SToby Isaac PetscInt *closure = NULL; 125b0bf5782SToby Isaac PetscInt closureSize, c; 126b0bf5782SToby Isaac 127b0bf5782SToby Isaac if (cStart <= q && q < cEnd && !completeCells) { /* skip cells */ 128b0bf5782SToby Isaac continue; 129b0bf5782SToby Isaac } 1309566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(dm, q, PETSC_TRUE, &closureSize, &closure)); 131b0bf5782SToby Isaac for (c = 0; c < closureSize*2; c += 2) { 1329566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(label, closure[c], values[v])); 133b0bf5782SToby Isaac } 1349566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dm, q, PETSC_TRUE, &closureSize, &closure)); 135b0bf5782SToby Isaac } 1369566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(pointIS, &points)); 1379566063dSJacob Faibussowitsch PetscCall(ISDestroy(&pointIS)); 138b0bf5782SToby Isaac } 1399566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(valueIS, &values)); 1409566063dSJacob Faibussowitsch PetscCall(ISDestroy(&valueIS)); 1419566063dSJacob Faibussowitsch PetscCall(DMGetPointSF(dm, &sfPoint)); 1429566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(sfPoint, &nroots, NULL, NULL, NULL)); 143ac51f24eSSander Arens if (nroots >= 0) { 14426279d81SSanderA DMLabel lblRoots, lblLeaves; 14526279d81SSanderA IS valueIS, pointIS; 14626279d81SSanderA const PetscInt *values; 14726279d81SSanderA PetscInt numValues, v; 14826279d81SSanderA 14926279d81SSanderA /* Pull point contributions from remote leaves into local roots */ 1509566063dSJacob Faibussowitsch PetscCall(DMLabelGather(label, sfPoint, &lblLeaves)); 1519566063dSJacob Faibussowitsch PetscCall(DMLabelGetValueIS(lblLeaves, &valueIS)); 1529566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(valueIS, &numValues)); 1539566063dSJacob Faibussowitsch PetscCall(ISGetIndices(valueIS, &values)); 15426279d81SSanderA for (v = 0; v < numValues; ++v) { 15526279d81SSanderA const PetscInt value = values[v]; 15626279d81SSanderA 1579566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(lblLeaves, value, &pointIS)); 1589566063dSJacob Faibussowitsch PetscCall(DMLabelInsertIS(label, pointIS, value)); 1599566063dSJacob Faibussowitsch PetscCall(ISDestroy(&pointIS)); 16026279d81SSanderA } 1619566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(valueIS, &values)); 1629566063dSJacob Faibussowitsch PetscCall(ISDestroy(&valueIS)); 1639566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&lblLeaves)); 16426279d81SSanderA /* Push point contributions from roots into remote leaves */ 1659566063dSJacob Faibussowitsch PetscCall(DMLabelDistribute(label, sfPoint, &lblRoots)); 1669566063dSJacob Faibussowitsch PetscCall(DMLabelGetValueIS(lblRoots, &valueIS)); 1679566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(valueIS, &numValues)); 1689566063dSJacob Faibussowitsch PetscCall(ISGetIndices(valueIS, &values)); 16926279d81SSanderA for (v = 0; v < numValues; ++v) { 17026279d81SSanderA const PetscInt value = values[v]; 17126279d81SSanderA 1729566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(lblRoots, value, &pointIS)); 1739566063dSJacob Faibussowitsch PetscCall(DMLabelInsertIS(label, pointIS, value)); 1749566063dSJacob Faibussowitsch PetscCall(ISDestroy(&pointIS)); 17526279d81SSanderA } 1769566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(valueIS, &values)); 1779566063dSJacob Faibussowitsch PetscCall(ISDestroy(&valueIS)); 1789566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&lblRoots)); 17926279d81SSanderA } 180b0bf5782SToby Isaac PetscFunctionReturn(0); 181b0bf5782SToby Isaac } 182b0bf5782SToby Isaac 1832be2b188SMatthew G Knepley /*@ 1842be2b188SMatthew G Knepley DMPlexLabelComplete - Starting with a label marking points on a surface, we add the transitive closure to the surface 1852be2b188SMatthew G Knepley 1862be2b188SMatthew G Knepley Input Parameters: 1872be2b188SMatthew G Knepley + dm - The DM 1882be2b188SMatthew G Knepley - label - A DMLabel marking the surface points 1892be2b188SMatthew G Knepley 1902be2b188SMatthew G Knepley Output Parameter: 1912be2b188SMatthew G Knepley . label - A DMLabel marking all surface points in the transitive closure 1922be2b188SMatthew G Knepley 1932be2b188SMatthew G Knepley Level: developer 1942be2b188SMatthew G Knepley 195db781477SPatrick Sanan .seealso: `DMPlexLabelCohesiveComplete()` 1962be2b188SMatthew G Knepley @*/ 1972be2b188SMatthew G Knepley PetscErrorCode DMPlexLabelComplete(DM dm, DMLabel label) 1982be2b188SMatthew G Knepley { 1992be2b188SMatthew G Knepley PetscFunctionBegin; 2009566063dSJacob Faibussowitsch PetscCall(DMPlexLabelComplete_Internal(dm, label, PETSC_TRUE)); 2012be2b188SMatthew G Knepley PetscFunctionReturn(0); 2022be2b188SMatthew G Knepley } 2032be2b188SMatthew G Knepley 2046cf0e42fSMatthew G. Knepley /*@ 205a6e0b375SMatthew G. Knepley DMPlexLabelAddCells - Starting with a label marking points on a surface, we add a cell for each point 2066cf0e42fSMatthew G. Knepley 2076cf0e42fSMatthew G. Knepley Input Parameters: 2086cf0e42fSMatthew G. Knepley + dm - The DM 2096cf0e42fSMatthew G. Knepley - label - A DMLabel marking the surface points 2106cf0e42fSMatthew G. Knepley 2116cf0e42fSMatthew G. Knepley Output Parameter: 2126cf0e42fSMatthew G. Knepley . label - A DMLabel incorporating cells 2136cf0e42fSMatthew G. Knepley 2146cf0e42fSMatthew G. Knepley Level: developer 2156cf0e42fSMatthew G. Knepley 2166cf0e42fSMatthew G. Knepley Note: The cells allow FEM boundary conditions to be applied using the cell geometry 2176cf0e42fSMatthew G. Knepley 218db781477SPatrick Sanan .seealso: `DMPlexLabelAddFaceCells()`, `DMPlexLabelComplete()`, `DMPlexLabelCohesiveComplete()` 2196cf0e42fSMatthew G. Knepley @*/ 2206cf0e42fSMatthew G. Knepley PetscErrorCode DMPlexLabelAddCells(DM dm, DMLabel label) 2216cf0e42fSMatthew G. Knepley { 2226cf0e42fSMatthew G. Knepley IS valueIS; 2236cf0e42fSMatthew G. Knepley const PetscInt *values; 224485ad865SMatthew G. Knepley PetscInt numValues, v, cStart, cEnd; 2256cf0e42fSMatthew G. Knepley 2266cf0e42fSMatthew G. Knepley PetscFunctionBegin; 2279566063dSJacob Faibussowitsch PetscCall(DMPlexGetSimplexOrBoxCells(dm, 0, &cStart, &cEnd)); 2289566063dSJacob Faibussowitsch PetscCall(DMLabelGetNumValues(label, &numValues)); 2299566063dSJacob Faibussowitsch PetscCall(DMLabelGetValueIS(label, &valueIS)); 2309566063dSJacob Faibussowitsch PetscCall(ISGetIndices(valueIS, &values)); 2316cf0e42fSMatthew G. Knepley for (v = 0; v < numValues; ++v) { 2326cf0e42fSMatthew G. Knepley IS pointIS; 2336cf0e42fSMatthew G. Knepley const PetscInt *points; 2346cf0e42fSMatthew G. Knepley PetscInt numPoints, p; 2356cf0e42fSMatthew G. Knepley 2369566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumSize(label, values[v], &numPoints)); 2379566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(label, values[v], &pointIS)); 2389566063dSJacob Faibussowitsch PetscCall(ISGetIndices(pointIS, &points)); 2396cf0e42fSMatthew G. Knepley for (p = 0; p < numPoints; ++p) { 2406cf0e42fSMatthew G. Knepley PetscInt *closure = NULL; 241a6e0b375SMatthew G. Knepley PetscInt closureSize, cl; 2426cf0e42fSMatthew G. Knepley 2439566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(dm, points[p], PETSC_FALSE, &closureSize, &closure)); 24422eabd52SMatthew G. Knepley for (cl = closureSize-1; cl > 0; --cl) { 245a6e0b375SMatthew G. Knepley const PetscInt cell = closure[cl*2]; 2469566063dSJacob Faibussowitsch if ((cell >= cStart) && (cell < cEnd)) {PetscCall(DMLabelSetValue(label, cell, values[v])); break;} 24722eabd52SMatthew G. Knepley } 2489566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dm, points[p], PETSC_FALSE, &closureSize, &closure)); 2496cf0e42fSMatthew G. Knepley } 2509566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(pointIS, &points)); 2519566063dSJacob Faibussowitsch PetscCall(ISDestroy(&pointIS)); 2526cf0e42fSMatthew G. Knepley } 2539566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(valueIS, &values)); 2549566063dSJacob Faibussowitsch PetscCall(ISDestroy(&valueIS)); 2556cf0e42fSMatthew G. Knepley PetscFunctionReturn(0); 2566cf0e42fSMatthew G. Knepley } 2576cf0e42fSMatthew G. Knepley 258f402d5e4SToby Isaac /*@ 259a6e0b375SMatthew G. Knepley DMPlexLabelAddFaceCells - Starting with a label marking faces on a surface, we add a cell for each face 260a6e0b375SMatthew G. Knepley 261a6e0b375SMatthew G. Knepley Input Parameters: 262a6e0b375SMatthew G. Knepley + dm - The DM 263a6e0b375SMatthew G. Knepley - label - A DMLabel marking the surface points 264a6e0b375SMatthew G. Knepley 265a6e0b375SMatthew G. Knepley Output Parameter: 266a6e0b375SMatthew G. Knepley . label - A DMLabel incorporating cells 267a6e0b375SMatthew G. Knepley 268a6e0b375SMatthew G. Knepley Level: developer 269a6e0b375SMatthew G. Knepley 270a6e0b375SMatthew G. Knepley Note: The cells allow FEM boundary conditions to be applied using the cell geometry 271a6e0b375SMatthew G. Knepley 272db781477SPatrick Sanan .seealso: `DMPlexLabelAddCells()`, `DMPlexLabelComplete()`, `DMPlexLabelCohesiveComplete()` 273a6e0b375SMatthew G. Knepley @*/ 274a6e0b375SMatthew G. Knepley PetscErrorCode DMPlexLabelAddFaceCells(DM dm, DMLabel label) 275a6e0b375SMatthew G. Knepley { 276a6e0b375SMatthew G. Knepley IS valueIS; 277a6e0b375SMatthew G. Knepley const PetscInt *values; 278a6e0b375SMatthew G. Knepley PetscInt numValues, v, cStart, cEnd, fStart, fEnd; 279a6e0b375SMatthew G. Knepley 280a6e0b375SMatthew G. Knepley PetscFunctionBegin; 2819566063dSJacob Faibussowitsch PetscCall(DMPlexGetSimplexOrBoxCells(dm, 0, &cStart, &cEnd)); 2829566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(dm, 1, &fStart, &fEnd)); 2839566063dSJacob Faibussowitsch PetscCall(DMLabelGetNumValues(label, &numValues)); 2849566063dSJacob Faibussowitsch PetscCall(DMLabelGetValueIS(label, &valueIS)); 2859566063dSJacob Faibussowitsch PetscCall(ISGetIndices(valueIS, &values)); 286a6e0b375SMatthew G. Knepley for (v = 0; v < numValues; ++v) { 287a6e0b375SMatthew G. Knepley IS pointIS; 288a6e0b375SMatthew G. Knepley const PetscInt *points; 289a6e0b375SMatthew G. Knepley PetscInt numPoints, p; 290a6e0b375SMatthew G. Knepley 2919566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumSize(label, values[v], &numPoints)); 2929566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(label, values[v], &pointIS)); 2939566063dSJacob Faibussowitsch PetscCall(ISGetIndices(pointIS, &points)); 294a6e0b375SMatthew G. Knepley for (p = 0; p < numPoints; ++p) { 295a6e0b375SMatthew G. Knepley const PetscInt face = points[p]; 296a6e0b375SMatthew G. Knepley PetscInt *closure = NULL; 297a6e0b375SMatthew G. Knepley PetscInt closureSize, cl; 298a6e0b375SMatthew G. Knepley 299a6e0b375SMatthew G. Knepley if ((face < fStart) || (face >= fEnd)) continue; 3009566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(dm, face, PETSC_FALSE, &closureSize, &closure)); 301a6e0b375SMatthew G. Knepley for (cl = closureSize-1; cl > 0; --cl) { 302a6e0b375SMatthew G. Knepley const PetscInt cell = closure[cl*2]; 3039566063dSJacob Faibussowitsch if ((cell >= cStart) && (cell < cEnd)) {PetscCall(DMLabelSetValue(label, cell, values[v])); break;} 304a6e0b375SMatthew G. Knepley } 3059566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dm, face, PETSC_FALSE, &closureSize, &closure)); 306a6e0b375SMatthew G. Knepley } 3079566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(pointIS, &points)); 3089566063dSJacob Faibussowitsch PetscCall(ISDestroy(&pointIS)); 309a6e0b375SMatthew G. Knepley } 3109566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(valueIS, &values)); 3119566063dSJacob Faibussowitsch PetscCall(ISDestroy(&valueIS)); 312a6e0b375SMatthew G. Knepley PetscFunctionReturn(0); 313a6e0b375SMatthew G. Knepley } 314a6e0b375SMatthew G. Knepley 315a6e0b375SMatthew G. Knepley /*@ 316f402d5e4SToby Isaac DMPlexLabelClearCells - Remove cells from a label 317f402d5e4SToby Isaac 318f402d5e4SToby Isaac Input Parameters: 319f402d5e4SToby Isaac + dm - The DM 320f402d5e4SToby Isaac - label - A DMLabel marking surface points and their adjacent cells 321f402d5e4SToby Isaac 322f402d5e4SToby Isaac Output Parameter: 323f402d5e4SToby Isaac . label - A DMLabel without cells 324f402d5e4SToby Isaac 325f402d5e4SToby Isaac Level: developer 326f402d5e4SToby Isaac 327a6e0b375SMatthew G. Knepley Note: This undoes DMPlexLabelAddCells() or DMPlexLabelAddFaceCells() 328f402d5e4SToby Isaac 329db781477SPatrick Sanan .seealso: `DMPlexLabelComplete()`, `DMPlexLabelCohesiveComplete()`, `DMPlexLabelAddCells()` 330f402d5e4SToby Isaac @*/ 331f402d5e4SToby Isaac PetscErrorCode DMPlexLabelClearCells(DM dm, DMLabel label) 332f402d5e4SToby Isaac { 333f402d5e4SToby Isaac IS valueIS; 334f402d5e4SToby Isaac const PetscInt *values; 335485ad865SMatthew G. Knepley PetscInt numValues, v, cStart, cEnd; 336f402d5e4SToby Isaac 337f402d5e4SToby Isaac PetscFunctionBegin; 3389566063dSJacob Faibussowitsch PetscCall(DMPlexGetSimplexOrBoxCells(dm, 0, &cStart, &cEnd)); 3399566063dSJacob Faibussowitsch PetscCall(DMLabelGetNumValues(label, &numValues)); 3409566063dSJacob Faibussowitsch PetscCall(DMLabelGetValueIS(label, &valueIS)); 3419566063dSJacob Faibussowitsch PetscCall(ISGetIndices(valueIS, &values)); 342f402d5e4SToby Isaac for (v = 0; v < numValues; ++v) { 343f402d5e4SToby Isaac IS pointIS; 344f402d5e4SToby Isaac const PetscInt *points; 345f402d5e4SToby Isaac PetscInt numPoints, p; 346f402d5e4SToby Isaac 3479566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumSize(label, values[v], &numPoints)); 3489566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(label, values[v], &pointIS)); 3499566063dSJacob Faibussowitsch PetscCall(ISGetIndices(pointIS, &points)); 350f402d5e4SToby Isaac for (p = 0; p < numPoints; ++p) { 351f402d5e4SToby Isaac PetscInt point = points[p]; 352f402d5e4SToby Isaac 353f402d5e4SToby Isaac if (point >= cStart && point < cEnd) { 3549566063dSJacob Faibussowitsch PetscCall(DMLabelClearValue(label,point,values[v])); 355f402d5e4SToby Isaac } 356f402d5e4SToby Isaac } 3579566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(pointIS, &points)); 3589566063dSJacob Faibussowitsch PetscCall(ISDestroy(&pointIS)); 359f402d5e4SToby Isaac } 3609566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(valueIS, &values)); 3619566063dSJacob Faibussowitsch PetscCall(ISDestroy(&valueIS)); 362f402d5e4SToby Isaac PetscFunctionReturn(0); 363f402d5e4SToby Isaac } 364f402d5e4SToby Isaac 36559eef20bSToby Isaac /* take (oldEnd, added) pairs, ordered by height and convert them to (oldstart, newstart) pairs, ordered by ascending 36659eef20bSToby Isaac * index (skipping first, which is (0,0)) */ 3679fbee547SJacob Faibussowitsch static inline PetscErrorCode DMPlexShiftPointSetUp_Internal(PetscInt depth, PetscInt depthShift[]) 368cd0c2139SMatthew G Knepley { 3692582d50cSToby Isaac PetscInt d, off = 0; 3702582d50cSToby Isaac 3712582d50cSToby Isaac PetscFunctionBegin; 37259eef20bSToby Isaac /* sort by (oldend): yes this is an O(n^2) sort, we expect depth <= 3 */ 3730974a383SToby Isaac for (d = 0; d < depth; d++) { 3742582d50cSToby Isaac PetscInt firstd = d; 3750974a383SToby Isaac PetscInt firstStart = depthShift[2*d]; 3762582d50cSToby Isaac PetscInt e; 3772582d50cSToby Isaac 3782582d50cSToby Isaac for (e = d+1; e <= depth; e++) { 3792582d50cSToby Isaac if (depthShift[2*e] < firstStart) { 3802582d50cSToby Isaac firstd = e; 3812582d50cSToby Isaac firstStart = depthShift[2*d]; 3822582d50cSToby Isaac } 3832582d50cSToby Isaac } 3842582d50cSToby Isaac if (firstd != d) { 3852582d50cSToby Isaac PetscInt swap[2]; 3862582d50cSToby Isaac 3872582d50cSToby Isaac e = firstd; 3882582d50cSToby Isaac swap[0] = depthShift[2*d]; 3892582d50cSToby Isaac swap[1] = depthShift[2*d+1]; 3902582d50cSToby Isaac depthShift[2*d] = depthShift[2*e]; 3912582d50cSToby Isaac depthShift[2*d+1] = depthShift[2*e+1]; 3922582d50cSToby Isaac depthShift[2*e] = swap[0]; 3932582d50cSToby Isaac depthShift[2*e+1] = swap[1]; 3942582d50cSToby Isaac } 3952582d50cSToby Isaac } 3962582d50cSToby Isaac /* convert (oldstart, added) to (oldstart, newstart) */ 3970974a383SToby Isaac for (d = 0; d <= depth; d++) { 3982582d50cSToby Isaac off += depthShift[2*d+1]; 39959eef20bSToby Isaac depthShift[2*d+1] = depthShift[2*d] + off; 4002582d50cSToby Isaac } 4012582d50cSToby Isaac PetscFunctionReturn(0); 4022582d50cSToby Isaac } 4032582d50cSToby Isaac 4042582d50cSToby Isaac /* depthShift is a list of (old, new) pairs */ 4059fbee547SJacob Faibussowitsch static inline PetscInt DMPlexShiftPoint_Internal(PetscInt p, PetscInt depth, PetscInt depthShift[]) 4062582d50cSToby Isaac { 4072582d50cSToby Isaac PetscInt d; 4082582d50cSToby Isaac PetscInt newOff = 0; 4092582d50cSToby Isaac 4102582d50cSToby Isaac for (d = 0; d <= depth; d++) { 4112582d50cSToby Isaac if (p < depthShift[2*d]) return p + newOff; 4122582d50cSToby Isaac else newOff = depthShift[2*d+1] - depthShift[2*d]; 4132582d50cSToby Isaac } 4140974a383SToby Isaac return p + newOff; 4152582d50cSToby Isaac } 4162582d50cSToby Isaac 4172582d50cSToby Isaac /* depthShift is a list of (old, new) pairs */ 4189fbee547SJacob Faibussowitsch static inline PetscInt DMPlexShiftPointInverse_Internal(PetscInt p, PetscInt depth, PetscInt depthShift[]) 4192582d50cSToby Isaac { 4202582d50cSToby Isaac PetscInt d; 4212582d50cSToby Isaac PetscInt newOff = 0; 4222582d50cSToby Isaac 4232582d50cSToby Isaac for (d = 0; d <= depth; d++) { 4242582d50cSToby Isaac if (p < depthShift[2*d+1]) return p + newOff; 4252582d50cSToby Isaac else newOff = depthShift[2*d] - depthShift[2*d+1]; 4262582d50cSToby Isaac } 4270974a383SToby Isaac return p + newOff; 428cd0c2139SMatthew G Knepley } 429cd0c2139SMatthew G Knepley 430cd0c2139SMatthew G Knepley static PetscErrorCode DMPlexShiftSizes_Internal(DM dm, PetscInt depthShift[], DM dmNew) 431cd0c2139SMatthew G Knepley { 432cd0c2139SMatthew G Knepley PetscInt depth = 0, d, pStart, pEnd, p; 433fa8e8ae5SToby Isaac DMLabel depthLabel; 434cd0c2139SMatthew G Knepley 435cd0c2139SMatthew G Knepley PetscFunctionBegin; 4369566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepth(dm, &depth)); 437cd0c2139SMatthew G Knepley if (depth < 0) PetscFunctionReturn(0); 438cd0c2139SMatthew G Knepley /* Step 1: Expand chart */ 4399566063dSJacob Faibussowitsch PetscCall(DMPlexGetChart(dm, &pStart, &pEnd)); 4400974a383SToby Isaac pEnd = DMPlexShiftPoint_Internal(pEnd,depth,depthShift); 4419566063dSJacob Faibussowitsch PetscCall(DMPlexSetChart(dmNew, pStart, pEnd)); 4429566063dSJacob Faibussowitsch PetscCall(DMCreateLabel(dmNew,"depth")); 4439566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthLabel(dmNew,&depthLabel)); 4449566063dSJacob Faibussowitsch PetscCall(DMCreateLabel(dmNew, "celltype")); 445cd0c2139SMatthew G Knepley /* Step 2: Set cone and support sizes */ 446cd0c2139SMatthew G Knepley for (d = 0; d <= depth; ++d) { 447fa8e8ae5SToby Isaac PetscInt pStartNew, pEndNew; 448fa8e8ae5SToby Isaac IS pIS; 449fa8e8ae5SToby Isaac 4509566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthStratum(dm, d, &pStart, &pEnd)); 451fa8e8ae5SToby Isaac pStartNew = DMPlexShiftPoint_Internal(pStart, depth, depthShift); 452fa8e8ae5SToby Isaac pEndNew = DMPlexShiftPoint_Internal(pEnd, depth, depthShift); 4539566063dSJacob Faibussowitsch PetscCall(ISCreateStride(PETSC_COMM_SELF, pEndNew - pStartNew, pStartNew, 1, &pIS)); 4549566063dSJacob Faibussowitsch PetscCall(DMLabelSetStratumIS(depthLabel, d, pIS)); 4559566063dSJacob Faibussowitsch PetscCall(ISDestroy(&pIS)); 456cd0c2139SMatthew G Knepley for (p = pStart; p < pEnd; ++p) { 4572582d50cSToby Isaac PetscInt newp = DMPlexShiftPoint_Internal(p, depth, depthShift); 458cd0c2139SMatthew G Knepley PetscInt size; 459412e9a14SMatthew G. Knepley DMPolytopeType ct; 460cd0c2139SMatthew G Knepley 4619566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, p, &size)); 4629566063dSJacob Faibussowitsch PetscCall(DMPlexSetConeSize(dmNew, newp, size)); 4639566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dm, p, &size)); 4649566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupportSize(dmNew, newp, size)); 4659566063dSJacob Faibussowitsch PetscCall(DMPlexGetCellType(dm, p, &ct)); 4669566063dSJacob Faibussowitsch PetscCall(DMPlexSetCellType(dmNew, newp, ct)); 467cd0c2139SMatthew G Knepley } 468cd0c2139SMatthew G Knepley } 469cd0c2139SMatthew G Knepley PetscFunctionReturn(0); 470cd0c2139SMatthew G Knepley } 471cd0c2139SMatthew G Knepley 472cd0c2139SMatthew G Knepley static PetscErrorCode DMPlexShiftPoints_Internal(DM dm, PetscInt depthShift[], DM dmNew) 473cd0c2139SMatthew G Knepley { 4742582d50cSToby Isaac PetscInt *newpoints; 4752582d50cSToby Isaac PetscInt depth = 0, maxConeSize, maxSupportSize, maxConeSizeNew, maxSupportSizeNew, pStart, pEnd, p; 476cd0c2139SMatthew G Knepley 477cd0c2139SMatthew G Knepley PetscFunctionBegin; 4789566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepth(dm, &depth)); 479cd0c2139SMatthew G Knepley if (depth < 0) PetscFunctionReturn(0); 4809566063dSJacob Faibussowitsch PetscCall(DMPlexGetMaxSizes(dm, &maxConeSize, &maxSupportSize)); 4819566063dSJacob Faibussowitsch PetscCall(DMPlexGetMaxSizes(dmNew, &maxConeSizeNew, &maxSupportSizeNew)); 4829566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(PetscMax(PetscMax(maxConeSize, maxSupportSize), PetscMax(maxConeSizeNew, maxSupportSizeNew)),&newpoints)); 483cd0c2139SMatthew G Knepley /* Step 5: Set cones and supports */ 4849566063dSJacob Faibussowitsch PetscCall(DMPlexGetChart(dm, &pStart, &pEnd)); 485cd0c2139SMatthew G Knepley for (p = pStart; p < pEnd; ++p) { 486cd0c2139SMatthew G Knepley const PetscInt *points = NULL, *orientations = NULL; 4872582d50cSToby Isaac PetscInt size,sizeNew, i, newp = DMPlexShiftPoint_Internal(p, depth, depthShift); 488cd0c2139SMatthew G Knepley 4899566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, p, &size)); 4909566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, p, &points)); 4919566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeOrientation(dm, p, &orientations)); 492cd0c2139SMatthew G Knepley for (i = 0; i < size; ++i) { 4932582d50cSToby Isaac newpoints[i] = DMPlexShiftPoint_Internal(points[i], depth, depthShift); 494cd0c2139SMatthew G Knepley } 4959566063dSJacob Faibussowitsch PetscCall(DMPlexSetCone(dmNew, newp, newpoints)); 4969566063dSJacob Faibussowitsch PetscCall(DMPlexSetConeOrientation(dmNew, newp, orientations)); 4979566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dm, p, &size)); 4989566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dmNew, newp, &sizeNew)); 4999566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(dm, p, &points)); 500cd0c2139SMatthew G Knepley for (i = 0; i < size; ++i) { 5012582d50cSToby Isaac newpoints[i] = DMPlexShiftPoint_Internal(points[i], depth, depthShift); 502cd0c2139SMatthew G Knepley } 503dcbb62e8SMatthew G. Knepley for (i = size; i < sizeNew; ++i) newpoints[i] = 0; 5049566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupport(dmNew, newp, newpoints)); 505cd0c2139SMatthew G Knepley } 5069566063dSJacob Faibussowitsch PetscCall(PetscFree(newpoints)); 507cd0c2139SMatthew G Knepley PetscFunctionReturn(0); 508cd0c2139SMatthew G Knepley } 509cd0c2139SMatthew G Knepley 510cd0c2139SMatthew G Knepley static PetscErrorCode DMPlexShiftCoordinates_Internal(DM dm, PetscInt depthShift[], DM dmNew) 511cd0c2139SMatthew G Knepley { 512cd0c2139SMatthew G Knepley PetscSection coordSection, newCoordSection; 513cd0c2139SMatthew G Knepley Vec coordinates, newCoordinates; 514cd0c2139SMatthew G Knepley PetscScalar *coords, *newCoords; 515f2b8cce1SMatthew G. Knepley PetscInt coordSize, sStart, sEnd; 516f2b8cce1SMatthew G. Knepley PetscInt dim, depth = 0, cStart, cEnd, cStartNew, cEndNew, c, vStart, vEnd, vStartNew, vEndNew, v; 517f2b8cce1SMatthew G. Knepley PetscBool hasCells; 518cd0c2139SMatthew G Knepley 519cd0c2139SMatthew G Knepley PetscFunctionBegin; 5209566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDim(dm, &dim)); 5219566063dSJacob Faibussowitsch PetscCall(DMSetCoordinateDim(dmNew, dim)); 5229566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepth(dm, &depth)); 523cd0c2139SMatthew G Knepley /* Step 8: Convert coordinates */ 5249566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthStratum(dm, 0, &vStart, &vEnd)); 5259566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(dm, 0, &cStart, &cEnd)); 5269566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthStratum(dmNew, 0, &vStartNew, &vEndNew)); 5279566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(dmNew, 0, &cStartNew, &cEndNew)); 5289566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateSection(dm, &coordSection)); 5299566063dSJacob Faibussowitsch PetscCall(PetscSectionCreate(PetscObjectComm((PetscObject)dm), &newCoordSection)); 5309566063dSJacob Faibussowitsch PetscCall(PetscSectionSetNumFields(newCoordSection, 1)); 5319566063dSJacob Faibussowitsch PetscCall(PetscSectionSetFieldComponents(newCoordSection, 0, dim)); 5329566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(coordSection, &sStart, &sEnd)); 533f2b8cce1SMatthew G. Knepley hasCells = sStart == cStart ? PETSC_TRUE : PETSC_FALSE; 5349566063dSJacob Faibussowitsch PetscCall(PetscSectionSetChart(newCoordSection, hasCells ? cStartNew : vStartNew, vEndNew)); 535f2b8cce1SMatthew G. Knepley if (hasCells) { 536f2b8cce1SMatthew G. Knepley for (c = cStart; c < cEnd; ++c) { 537f2b8cce1SMatthew G. Knepley PetscInt cNew = DMPlexShiftPoint_Internal(c, depth, depthShift), dof; 538f2b8cce1SMatthew G. Knepley 5399566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(coordSection, c, &dof)); 5409566063dSJacob Faibussowitsch PetscCall(PetscSectionSetDof(newCoordSection, cNew, dof)); 5419566063dSJacob Faibussowitsch PetscCall(PetscSectionSetFieldDof(newCoordSection, cNew, 0, dof)); 542f2b8cce1SMatthew G. Knepley } 543f2b8cce1SMatthew G. Knepley } 544cd0c2139SMatthew G Knepley for (v = vStartNew; v < vEndNew; ++v) { 5459566063dSJacob Faibussowitsch PetscCall(PetscSectionSetDof(newCoordSection, v, dim)); 5469566063dSJacob Faibussowitsch PetscCall(PetscSectionSetFieldDof(newCoordSection, v, 0, dim)); 547cd0c2139SMatthew G Knepley } 5489566063dSJacob Faibussowitsch PetscCall(PetscSectionSetUp(newCoordSection)); 5499566063dSJacob Faibussowitsch PetscCall(DMSetCoordinateSection(dmNew, PETSC_DETERMINE, newCoordSection)); 5509566063dSJacob Faibussowitsch PetscCall(PetscSectionGetStorageSize(newCoordSection, &coordSize)); 5519566063dSJacob Faibussowitsch PetscCall(VecCreate(PETSC_COMM_SELF, &newCoordinates)); 5529566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject) newCoordinates, "coordinates")); 5539566063dSJacob Faibussowitsch PetscCall(VecSetSizes(newCoordinates, coordSize, PETSC_DETERMINE)); 5549566063dSJacob Faibussowitsch PetscCall(VecSetBlockSize(newCoordinates, dim)); 5559566063dSJacob Faibussowitsch PetscCall(VecSetType(newCoordinates,VECSTANDARD)); 5569566063dSJacob Faibussowitsch PetscCall(DMSetCoordinatesLocal(dmNew, newCoordinates)); 5579566063dSJacob Faibussowitsch PetscCall(DMGetCoordinatesLocal(dm, &coordinates)); 5589566063dSJacob Faibussowitsch PetscCall(VecGetArray(coordinates, &coords)); 5599566063dSJacob Faibussowitsch PetscCall(VecGetArray(newCoordinates, &newCoords)); 560f2b8cce1SMatthew G. Knepley if (hasCells) { 561f2b8cce1SMatthew G. Knepley for (c = cStart; c < cEnd; ++c) { 562f2b8cce1SMatthew G. Knepley PetscInt cNew = DMPlexShiftPoint_Internal(c, depth, depthShift), dof, off, noff, d; 563f2b8cce1SMatthew G. Knepley 5649566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(coordSection, c, &dof)); 5659566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(coordSection, c, &off)); 5669566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(newCoordSection, cNew, &noff)); 567f2b8cce1SMatthew G. Knepley for (d = 0; d < dof; ++d) newCoords[noff+d] = coords[off+d]; 568f2b8cce1SMatthew G. Knepley } 569f2b8cce1SMatthew G. Knepley } 570cd0c2139SMatthew G Knepley for (v = vStart; v < vEnd; ++v) { 571cd0c2139SMatthew G Knepley PetscInt dof, off, noff, d; 572cd0c2139SMatthew G Knepley 5739566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(coordSection, v, &dof)); 5749566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(coordSection, v, &off)); 5759566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(newCoordSection, DMPlexShiftPoint_Internal(v, depth, depthShift), &noff)); 576f2b8cce1SMatthew G. Knepley for (d = 0; d < dof; ++d) newCoords[noff+d] = coords[off+d]; 577cd0c2139SMatthew G Knepley } 5789566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(coordinates, &coords)); 5799566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(newCoordinates, &newCoords)); 5809566063dSJacob Faibussowitsch PetscCall(VecDestroy(&newCoordinates)); 5819566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&newCoordSection)); 582cd0c2139SMatthew G Knepley PetscFunctionReturn(0); 583cd0c2139SMatthew G Knepley } 584cd0c2139SMatthew G Knepley 5850e33faafSMatthew G. Knepley static PetscErrorCode DMPlexShiftSF_Single(DM dm, PetscInt depthShift[], PetscSF sf, PetscSF sfNew) 586cd0c2139SMatthew G Knepley { 587cd0c2139SMatthew G Knepley const PetscSFNode *remotePoints; 588cd0c2139SMatthew G Knepley PetscSFNode *gremotePoints; 589cd0c2139SMatthew G Knepley const PetscInt *localPoints; 590cd0c2139SMatthew G Knepley PetscInt *glocalPoints, *newLocation, *newRemoteLocation; 5910e33faafSMatthew G. Knepley PetscInt numRoots, numLeaves, l, pStart, pEnd, depth = 0, totShift = 0; 592cd0c2139SMatthew G Knepley 593cd0c2139SMatthew G Knepley PetscFunctionBegin; 5949566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepth(dm, &depth)); 5959566063dSJacob Faibussowitsch PetscCall(DMPlexGetChart(dm, &pStart, &pEnd)); 5969566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(sf, &numRoots, &numLeaves, &localPoints, &remotePoints)); 5976e21efdcSToby Isaac totShift = DMPlexShiftPoint_Internal(pEnd, depth, depthShift) - pEnd; 598cd0c2139SMatthew G Knepley if (numRoots >= 0) { 5999566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(numRoots, &newLocation, pEnd-pStart, &newRemoteLocation)); 6000e33faafSMatthew G. Knepley for (l = 0; l < numRoots; ++l) newLocation[l] = DMPlexShiftPoint_Internal(l, depth, depthShift); 6019566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(sf, MPIU_INT, newLocation, newRemoteLocation, MPI_REPLACE)); 6029566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(sf, MPIU_INT, newLocation, newRemoteLocation, MPI_REPLACE)); 6039566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(numLeaves, &glocalPoints)); 6049566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(numLeaves, &gremotePoints)); 605cd0c2139SMatthew G Knepley for (l = 0; l < numLeaves; ++l) { 6062582d50cSToby Isaac glocalPoints[l] = DMPlexShiftPoint_Internal(localPoints[l], depth, depthShift); 607cd0c2139SMatthew G Knepley gremotePoints[l].rank = remotePoints[l].rank; 608cd0c2139SMatthew G Knepley gremotePoints[l].index = newRemoteLocation[localPoints[l]]; 609cd0c2139SMatthew G Knepley } 6109566063dSJacob Faibussowitsch PetscCall(PetscFree2(newLocation, newRemoteLocation)); 6119566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(sfNew, numRoots + totShift, numLeaves, glocalPoints, PETSC_OWN_POINTER, gremotePoints, PETSC_OWN_POINTER)); 6120e33faafSMatthew G. Knepley } 6130e33faafSMatthew G. Knepley PetscFunctionReturn(0); 6140e33faafSMatthew G. Knepley } 6150e33faafSMatthew G. Knepley 6160e33faafSMatthew G. Knepley static PetscErrorCode DMPlexShiftSF_Internal(DM dm, PetscInt depthShift[], DM dmNew) 6170e33faafSMatthew G. Knepley { 6180e33faafSMatthew G. Knepley PetscSF sfPoint, sfPointNew; 6190e33faafSMatthew G. Knepley PetscBool useNatural; 6200e33faafSMatthew G. Knepley 6210e33faafSMatthew G. Knepley PetscFunctionBegin; 6220e33faafSMatthew G. Knepley /* Step 9: Convert pointSF */ 6239566063dSJacob Faibussowitsch PetscCall(DMGetPointSF(dm, &sfPoint)); 6249566063dSJacob Faibussowitsch PetscCall(DMGetPointSF(dmNew, &sfPointNew)); 6259566063dSJacob Faibussowitsch PetscCall(DMPlexShiftSF_Single(dm, depthShift, sfPoint, sfPointNew)); 6260e33faafSMatthew G. Knepley /* Step 9b: Convert naturalSF */ 6279566063dSJacob Faibussowitsch PetscCall(DMGetUseNatural(dm, &useNatural)); 6280e33faafSMatthew G. Knepley if (useNatural) { 6290e33faafSMatthew G. Knepley PetscSF sfNat, sfNatNew; 6300e33faafSMatthew G. Knepley 6319566063dSJacob Faibussowitsch PetscCall(DMSetUseNatural(dmNew, useNatural)); 6329566063dSJacob Faibussowitsch PetscCall(DMGetNaturalSF(dm, &sfNat)); 6339566063dSJacob Faibussowitsch PetscCall(DMGetNaturalSF(dmNew, &sfNatNew)); 6349566063dSJacob Faibussowitsch PetscCall(DMPlexShiftSF_Single(dm, depthShift, sfNat, sfNatNew)); 635cd0c2139SMatthew G Knepley } 636cd0c2139SMatthew G Knepley PetscFunctionReturn(0); 637cd0c2139SMatthew G Knepley } 638cd0c2139SMatthew G Knepley 639cd0c2139SMatthew G Knepley static PetscErrorCode DMPlexShiftLabels_Internal(DM dm, PetscInt depthShift[], DM dmNew) 640cd0c2139SMatthew G Knepley { 641d56405f8SMatthew G. Knepley PetscInt depth = 0, numLabels, l; 642cd0c2139SMatthew G Knepley 643cd0c2139SMatthew G Knepley PetscFunctionBegin; 6449566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepth(dm, &depth)); 645cd0c2139SMatthew G Knepley /* Step 10: Convert labels */ 6469566063dSJacob Faibussowitsch PetscCall(DMGetNumLabels(dm, &numLabels)); 647cd0c2139SMatthew G Knepley for (l = 0; l < numLabels; ++l) { 648cd0c2139SMatthew G Knepley DMLabel label, newlabel; 649cd0c2139SMatthew G Knepley const char *lname; 650fa8e8ae5SToby Isaac PetscBool isDepth, isDim; 651cd0c2139SMatthew G Knepley IS valueIS; 652cd0c2139SMatthew G Knepley const PetscInt *values; 653cd0c2139SMatthew G Knepley PetscInt numValues, val; 654cd0c2139SMatthew G Knepley 6559566063dSJacob Faibussowitsch PetscCall(DMGetLabelName(dm, l, &lname)); 6569566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(lname, "depth", &isDepth)); 657cd0c2139SMatthew G Knepley if (isDepth) continue; 6589566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(lname, "dim", &isDim)); 659fa8e8ae5SToby Isaac if (isDim) continue; 6609566063dSJacob Faibussowitsch PetscCall(DMCreateLabel(dmNew, lname)); 6619566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, lname, &label)); 6629566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dmNew, lname, &newlabel)); 6639566063dSJacob Faibussowitsch PetscCall(DMLabelGetDefaultValue(label,&val)); 6649566063dSJacob Faibussowitsch PetscCall(DMLabelSetDefaultValue(newlabel,val)); 6659566063dSJacob Faibussowitsch PetscCall(DMLabelGetValueIS(label, &valueIS)); 6669566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(valueIS, &numValues)); 6679566063dSJacob Faibussowitsch PetscCall(ISGetIndices(valueIS, &values)); 668cd0c2139SMatthew G Knepley for (val = 0; val < numValues; ++val) { 669cd0c2139SMatthew G Knepley IS pointIS; 670cd0c2139SMatthew G Knepley const PetscInt *points; 671cd0c2139SMatthew G Knepley PetscInt numPoints, p; 672cd0c2139SMatthew G Knepley 6739566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(label, values[val], &pointIS)); 6749566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(pointIS, &numPoints)); 6759566063dSJacob Faibussowitsch PetscCall(ISGetIndices(pointIS, &points)); 676cd0c2139SMatthew G Knepley for (p = 0; p < numPoints; ++p) { 6772582d50cSToby Isaac const PetscInt newpoint = DMPlexShiftPoint_Internal(points[p], depth, depthShift); 678cd0c2139SMatthew G Knepley 6799566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(newlabel, newpoint, values[val])); 680cd0c2139SMatthew G Knepley } 6819566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(pointIS, &points)); 6829566063dSJacob Faibussowitsch PetscCall(ISDestroy(&pointIS)); 683cd0c2139SMatthew G Knepley } 6849566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(valueIS, &values)); 6859566063dSJacob Faibussowitsch PetscCall(ISDestroy(&valueIS)); 686cd0c2139SMatthew G Knepley } 687d56405f8SMatthew G. Knepley PetscFunctionReturn(0); 688d56405f8SMatthew G. Knepley } 689d56405f8SMatthew G. Knepley 690d56405f8SMatthew G. Knepley static PetscErrorCode DMPlexCreateVTKLabel_Internal(DM dm, PetscBool createGhostLabel, DM dmNew) 691d56405f8SMatthew G. Knepley { 692d56405f8SMatthew G. Knepley PetscSF sfPoint; 693d56405f8SMatthew G. Knepley DMLabel vtkLabel, ghostLabel = NULL; 694d56405f8SMatthew G. Knepley const PetscSFNode *leafRemote; 695d56405f8SMatthew G. Knepley const PetscInt *leafLocal; 696d56405f8SMatthew G. Knepley PetscInt cellHeight, cStart, cEnd, c, fStart, fEnd, f, numLeaves, l; 697d56405f8SMatthew G. Knepley PetscMPIInt rank; 698d56405f8SMatthew G. Knepley 699d56405f8SMatthew G. Knepley PetscFunctionBegin; 700cd0c2139SMatthew G Knepley /* Step 11: Make label for output (vtk) and to mark ghost points (ghost) */ 7019566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)dm), &rank)); 7029566063dSJacob Faibussowitsch PetscCall(DMGetPointSF(dm, &sfPoint)); 7039566063dSJacob Faibussowitsch PetscCall(DMPlexGetVTKCellHeight(dmNew, &cellHeight)); 7049566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(dm, cellHeight, &cStart, &cEnd)); 7059566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(sfPoint, NULL, &numLeaves, &leafLocal, &leafRemote)); 7069566063dSJacob Faibussowitsch PetscCall(DMCreateLabel(dmNew, "vtk")); 7079566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dmNew, "vtk", &vtkLabel)); 708d56405f8SMatthew G. Knepley if (createGhostLabel) { 7099566063dSJacob Faibussowitsch PetscCall(DMCreateLabel(dmNew, "ghost")); 7109566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dmNew, "ghost", &ghostLabel)); 711d56405f8SMatthew G. Knepley } 712cd0c2139SMatthew G Knepley for (l = 0, c = cStart; l < numLeaves && c < cEnd; ++l, ++c) { 713cd0c2139SMatthew G Knepley for (; c < leafLocal[l] && c < cEnd; ++c) { 7149566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(vtkLabel, c, 1)); 715cd0c2139SMatthew G Knepley } 716cd0c2139SMatthew G Knepley if (leafLocal[l] >= cEnd) break; 717cd0c2139SMatthew G Knepley if (leafRemote[l].rank == rank) { 7189566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(vtkLabel, c, 1)); 719d56405f8SMatthew G. Knepley } else if (ghostLabel) { 7209566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(ghostLabel, c, 2)); 721cd0c2139SMatthew G Knepley } 722cd0c2139SMatthew G Knepley } 723cd0c2139SMatthew G Knepley for (; c < cEnd; ++c) { 7249566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(vtkLabel, c, 1)); 725cd0c2139SMatthew G Knepley } 726d56405f8SMatthew G. Knepley if (ghostLabel) { 7279566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(dmNew, 1, &fStart, &fEnd)); 728cd0c2139SMatthew G Knepley for (f = fStart; f < fEnd; ++f) { 729cd0c2139SMatthew G Knepley PetscInt numCells; 730cd0c2139SMatthew G Knepley 7319566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dmNew, f, &numCells)); 732cd0c2139SMatthew G Knepley if (numCells < 2) { 7339566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(ghostLabel, f, 1)); 734cd0c2139SMatthew G Knepley } else { 735cd0c2139SMatthew G Knepley const PetscInt *cells = NULL; 736cd0c2139SMatthew G Knepley PetscInt vA, vB; 737cd0c2139SMatthew G Knepley 7389566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(dmNew, f, &cells)); 7399566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(vtkLabel, cells[0], &vA)); 7409566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(vtkLabel, cells[1], &vB)); 7419566063dSJacob Faibussowitsch if (vA != 1 && vB != 1) PetscCall(DMLabelSetValue(ghostLabel, f, 1)); 742cd0c2139SMatthew G Knepley } 743cd0c2139SMatthew G Knepley } 744d56405f8SMatthew G. Knepley } 745cd0c2139SMatthew G Knepley PetscFunctionReturn(0); 746cd0c2139SMatthew G Knepley } 747cd0c2139SMatthew G Knepley 748ca04dac2SToby Isaac static PetscErrorCode DMPlexShiftTree_Internal(DM dm, PetscInt depthShift[], DM dmNew) 749ca04dac2SToby Isaac { 750ca04dac2SToby Isaac DM refTree; 751ca04dac2SToby Isaac PetscSection pSec; 752ca04dac2SToby Isaac PetscInt *parents, *childIDs; 753ca04dac2SToby Isaac 754ca04dac2SToby Isaac PetscFunctionBegin; 7559566063dSJacob Faibussowitsch PetscCall(DMPlexGetReferenceTree(dm,&refTree)); 7569566063dSJacob Faibussowitsch PetscCall(DMPlexSetReferenceTree(dmNew,refTree)); 7579566063dSJacob Faibussowitsch PetscCall(DMPlexGetTree(dm,&pSec,&parents,&childIDs,NULL,NULL)); 758ca04dac2SToby Isaac if (pSec) { 7592582d50cSToby Isaac PetscInt p, pStart, pEnd, *parentsShifted, pStartShifted, pEndShifted, depth; 760fb4630b5SToby Isaac PetscInt *childIDsShifted; 761ca04dac2SToby Isaac PetscSection pSecShifted; 762ca04dac2SToby Isaac 7639566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(pSec,&pStart,&pEnd)); 7649566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepth(dm,&depth)); 7652582d50cSToby Isaac pStartShifted = DMPlexShiftPoint_Internal(pStart,depth,depthShift); 7662582d50cSToby Isaac pEndShifted = DMPlexShiftPoint_Internal(pEnd,depth,depthShift); 7679566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(pEndShifted - pStartShifted,&parentsShifted,pEndShifted-pStartShifted,&childIDsShifted)); 7689566063dSJacob Faibussowitsch PetscCall(PetscSectionCreate(PetscObjectComm((PetscObject)dmNew),&pSecShifted)); 7699566063dSJacob Faibussowitsch PetscCall(PetscSectionSetChart(pSecShifted,pStartShifted,pEndShifted)); 770ca04dac2SToby Isaac for (p = pStartShifted; p < pEndShifted; p++) { 771fb4630b5SToby Isaac /* start off assuming no children */ 7729566063dSJacob Faibussowitsch PetscCall(PetscSectionSetDof(pSecShifted,p,0)); 773fb4630b5SToby Isaac } 774fb4630b5SToby Isaac for (p = pStart; p < pEnd; p++) { 775fb4630b5SToby Isaac PetscInt dof; 776fb4630b5SToby Isaac PetscInt pNew = DMPlexShiftPoint_Internal(p,depth,depthShift); 777ca04dac2SToby Isaac 7789566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(pSec,p,&dof)); 7799566063dSJacob Faibussowitsch PetscCall(PetscSectionSetDof(pSecShifted,pNew,dof)); 780ca04dac2SToby Isaac } 7819566063dSJacob Faibussowitsch PetscCall(PetscSectionSetUp(pSecShifted)); 782fb4630b5SToby Isaac for (p = pStart; p < pEnd; p++) { 783fb4630b5SToby Isaac PetscInt dof; 784fb4630b5SToby Isaac PetscInt pNew = DMPlexShiftPoint_Internal(p,depth,depthShift); 785fb4630b5SToby Isaac 7869566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(pSec,p,&dof)); 787fb4630b5SToby Isaac if (dof) { 788fb4630b5SToby Isaac PetscInt off, offNew; 789fb4630b5SToby Isaac 7909566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(pSec,p,&off)); 7919566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(pSecShifted,pNew,&offNew)); 792fb4630b5SToby Isaac parentsShifted[offNew] = DMPlexShiftPoint_Internal(parents[off],depth,depthShift); 793fb4630b5SToby Isaac childIDsShifted[offNew] = childIDs[off]; 794fb4630b5SToby Isaac } 795fb4630b5SToby Isaac } 7969566063dSJacob Faibussowitsch PetscCall(DMPlexSetTree(dmNew,pSecShifted,parentsShifted,childIDsShifted)); 7979566063dSJacob Faibussowitsch PetscCall(PetscFree2(parentsShifted,childIDsShifted)); 7989566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&pSecShifted)); 799ca04dac2SToby Isaac } 800ca04dac2SToby Isaac PetscFunctionReturn(0); 801ca04dac2SToby Isaac } 802ca04dac2SToby Isaac 803cd0c2139SMatthew G Knepley static PetscErrorCode DMPlexConstructGhostCells_Internal(DM dm, DMLabel label, PetscInt *numGhostCells, DM gdm) 804cd0c2139SMatthew G Knepley { 805da97024aSMatthew G. Knepley PetscSF sf; 806cd0c2139SMatthew G Knepley IS valueIS; 807da97024aSMatthew G. Knepley const PetscInt *values, *leaves; 808cd0c2139SMatthew G Knepley PetscInt *depthShift; 8092582d50cSToby Isaac PetscInt d, depth = 0, nleaves, loc, Ng, numFS, fs, fStart, fEnd, ghostCell, cEnd, c; 81090b157c4SStefano Zampini PetscBool isper; 81190b157c4SStefano Zampini const PetscReal *maxCell, *L; 81290b157c4SStefano Zampini const DMBoundaryType *bd; 813cd0c2139SMatthew G Knepley 814cd0c2139SMatthew G Knepley PetscFunctionBegin; 8159566063dSJacob Faibussowitsch PetscCall(DMGetPointSF(dm, &sf)); 8169566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(sf, NULL, &nleaves, &leaves, NULL)); 817da97024aSMatthew G. Knepley nleaves = PetscMax(0, nleaves); 8189566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(dm, 1, &fStart, &fEnd)); 819cd0c2139SMatthew G Knepley /* Count ghost cells */ 8209566063dSJacob Faibussowitsch PetscCall(DMLabelGetValueIS(label, &valueIS)); 8219566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(valueIS, &numFS)); 8229566063dSJacob Faibussowitsch PetscCall(ISGetIndices(valueIS, &values)); 8234a6cfa73SMatthew G. Knepley Ng = 0; 824cd0c2139SMatthew G Knepley for (fs = 0; fs < numFS; ++fs) { 82546c796b9SMatthew G. Knepley IS faceIS; 82646c796b9SMatthew G. Knepley const PetscInt *faces; 82746c796b9SMatthew G. Knepley PetscInt numFaces, f, numBdFaces = 0; 828cd0c2139SMatthew G Knepley 8299566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(label, values[fs], &faceIS)); 8309566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(faceIS, &numFaces)); 8319566063dSJacob Faibussowitsch PetscCall(ISGetIndices(faceIS, &faces)); 83246c796b9SMatthew G. Knepley for (f = 0; f < numFaces; ++f) { 833ca04dac2SToby Isaac PetscInt numChildren; 834ca04dac2SToby Isaac 8359566063dSJacob Faibussowitsch PetscCall(PetscFindInt(faces[f], nleaves, leaves, &loc)); 8369566063dSJacob Faibussowitsch PetscCall(DMPlexGetTreeChildren(dm,faces[f],&numChildren,NULL)); 837ca04dac2SToby Isaac /* non-local and ancestors points don't get to register ghosts */ 838ca04dac2SToby Isaac if (loc >= 0 || numChildren) continue; 83946c796b9SMatthew G. Knepley if ((faces[f] >= fStart) && (faces[f] < fEnd)) ++numBdFaces; 84046c796b9SMatthew G. Knepley } 8414a6cfa73SMatthew G. Knepley Ng += numBdFaces; 8429566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(faceIS, &faces)); 8439566063dSJacob Faibussowitsch PetscCall(ISDestroy(&faceIS)); 844cd0c2139SMatthew G Knepley } 8459566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepth(dm, &depth)); 8469566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(2*(depth+1), &depthShift)); 8472582d50cSToby Isaac for (d = 0; d <= depth; d++) { 84859eef20bSToby Isaac PetscInt dEnd; 8492582d50cSToby Isaac 8509566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthStratum(dm,d,NULL,&dEnd)); 85159eef20bSToby Isaac depthShift[2*d] = dEnd; 8522582d50cSToby Isaac depthShift[2*d+1] = 0; 8532582d50cSToby Isaac } 8542582d50cSToby Isaac if (depth >= 0) depthShift[2*depth+1] = Ng; 8559566063dSJacob Faibussowitsch PetscCall(DMPlexShiftPointSetUp_Internal(depth,depthShift)); 8569566063dSJacob Faibussowitsch PetscCall(DMPlexShiftSizes_Internal(dm, depthShift, gdm)); 857cd0c2139SMatthew G Knepley /* Step 3: Set cone/support sizes for new points */ 8589566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(dm, 0, NULL, &cEnd)); 8594a6cfa73SMatthew G. Knepley for (c = cEnd; c < cEnd + Ng; ++c) { 8609566063dSJacob Faibussowitsch PetscCall(DMPlexSetConeSize(gdm, c, 1)); 861cd0c2139SMatthew G Knepley } 862cd0c2139SMatthew G Knepley for (fs = 0; fs < numFS; ++fs) { 863cd0c2139SMatthew G Knepley IS faceIS; 864cd0c2139SMatthew G Knepley const PetscInt *faces; 865cd0c2139SMatthew G Knepley PetscInt numFaces, f; 866cd0c2139SMatthew G Knepley 8679566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(label, values[fs], &faceIS)); 8689566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(faceIS, &numFaces)); 8699566063dSJacob Faibussowitsch PetscCall(ISGetIndices(faceIS, &faces)); 870cd0c2139SMatthew G Knepley for (f = 0; f < numFaces; ++f) { 871ca04dac2SToby Isaac PetscInt size, numChildren; 872cd0c2139SMatthew G Knepley 8739566063dSJacob Faibussowitsch PetscCall(PetscFindInt(faces[f], nleaves, leaves, &loc)); 8749566063dSJacob Faibussowitsch PetscCall(DMPlexGetTreeChildren(dm,faces[f],&numChildren,NULL)); 875ca04dac2SToby Isaac if (loc >= 0 || numChildren) continue; 87646c796b9SMatthew G. Knepley if ((faces[f] < fStart) || (faces[f] >= fEnd)) continue; 8779566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dm, faces[f], &size)); 87863a3b9bcSJacob Faibussowitsch PetscCheck(size == 1,PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "DM has boundary face %" PetscInt_FMT " with %" PetscInt_FMT " support cells", faces[f], size); 8799566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupportSize(gdm, faces[f] + Ng, 2)); 880cd0c2139SMatthew G Knepley } 8819566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(faceIS, &faces)); 8829566063dSJacob Faibussowitsch PetscCall(ISDestroy(&faceIS)); 883cd0c2139SMatthew G Knepley } 884cd0c2139SMatthew G Knepley /* Step 4: Setup ghosted DM */ 8859566063dSJacob Faibussowitsch PetscCall(DMSetUp(gdm)); 8869566063dSJacob Faibussowitsch PetscCall(DMPlexShiftPoints_Internal(dm, depthShift, gdm)); 887cd0c2139SMatthew G Knepley /* Step 6: Set cones and supports for new points */ 888cd0c2139SMatthew G Knepley ghostCell = cEnd; 889cd0c2139SMatthew G Knepley for (fs = 0; fs < numFS; ++fs) { 890cd0c2139SMatthew G Knepley IS faceIS; 891cd0c2139SMatthew G Knepley const PetscInt *faces; 892cd0c2139SMatthew G Knepley PetscInt numFaces, f; 893cd0c2139SMatthew G Knepley 8949566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(label, values[fs], &faceIS)); 8959566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(faceIS, &numFaces)); 8969566063dSJacob Faibussowitsch PetscCall(ISGetIndices(faceIS, &faces)); 89746c796b9SMatthew G. Knepley for (f = 0; f < numFaces; ++f) { 898ca04dac2SToby Isaac PetscInt newFace = faces[f] + Ng, numChildren; 899cd0c2139SMatthew G Knepley 9009566063dSJacob Faibussowitsch PetscCall(PetscFindInt(faces[f], nleaves, leaves, &loc)); 9019566063dSJacob Faibussowitsch PetscCall(DMPlexGetTreeChildren(dm,faces[f],&numChildren,NULL)); 902ca04dac2SToby Isaac if (loc >= 0 || numChildren) continue; 90346c796b9SMatthew G. Knepley if ((faces[f] < fStart) || (faces[f] >= fEnd)) continue; 9049566063dSJacob Faibussowitsch PetscCall(DMPlexSetCone(gdm, ghostCell, &newFace)); 9059566063dSJacob Faibussowitsch PetscCall(DMPlexInsertSupport(gdm, newFace, 1, ghostCell)); 90646c796b9SMatthew G. Knepley ++ghostCell; 907cd0c2139SMatthew G Knepley } 9089566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(faceIS, &faces)); 9099566063dSJacob Faibussowitsch PetscCall(ISDestroy(&faceIS)); 910cd0c2139SMatthew G Knepley } 9119566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(valueIS, &values)); 9129566063dSJacob Faibussowitsch PetscCall(ISDestroy(&valueIS)); 9139566063dSJacob Faibussowitsch PetscCall(DMPlexShiftCoordinates_Internal(dm, depthShift, gdm)); 9149566063dSJacob Faibussowitsch PetscCall(DMPlexShiftSF_Internal(dm, depthShift, gdm)); 9159566063dSJacob Faibussowitsch PetscCall(DMPlexShiftLabels_Internal(dm, depthShift, gdm)); 9169566063dSJacob Faibussowitsch PetscCall(DMPlexCreateVTKLabel_Internal(dm, PETSC_TRUE, gdm)); 9179566063dSJacob Faibussowitsch PetscCall(DMPlexShiftTree_Internal(dm, depthShift, gdm)); 9189566063dSJacob Faibussowitsch PetscCall(PetscFree(depthShift)); 919412e9a14SMatthew G. Knepley for (c = cEnd; c < cEnd + Ng; ++c) { 9209566063dSJacob Faibussowitsch PetscCall(DMPlexSetCellType(gdm, c, DM_POLYTOPE_FV_GHOST)); 921412e9a14SMatthew G. Knepley } 922966c7b3fSMatthew G. Knepley /* Step 7: Periodicity */ 9239566063dSJacob Faibussowitsch PetscCall(DMGetPeriodicity(dm, &isper, &maxCell, &L, &bd)); 9249566063dSJacob Faibussowitsch PetscCall(DMSetPeriodicity(gdm, isper, maxCell, L, bd)); 9254a6cfa73SMatthew G. Knepley if (numGhostCells) *numGhostCells = Ng; 926cd0c2139SMatthew G Knepley PetscFunctionReturn(0); 927cd0c2139SMatthew G Knepley } 928cd0c2139SMatthew G Knepley 929cd0c2139SMatthew G Knepley /*@C 930cd0c2139SMatthew G Knepley DMPlexConstructGhostCells - Construct ghost cells which connect to every boundary face 931cd0c2139SMatthew G Knepley 932cd0c2139SMatthew G Knepley Collective on dm 933cd0c2139SMatthew G Knepley 934cd0c2139SMatthew G Knepley Input Parameters: 935cd0c2139SMatthew G Knepley + dm - The original DM 936cd0c2139SMatthew G Knepley - labelName - The label specifying the boundary faces, or "Face Sets" if this is NULL 937cd0c2139SMatthew G Knepley 938cd0c2139SMatthew G Knepley Output Parameters: 939cd0c2139SMatthew G Knepley + numGhostCells - The number of ghost cells added to the DM 940cd0c2139SMatthew G Knepley - dmGhosted - The new DM 941cd0c2139SMatthew G Knepley 942cd0c2139SMatthew G Knepley Note: If no label exists of that name, one will be created marking all boundary faces 943cd0c2139SMatthew G Knepley 944cd0c2139SMatthew G Knepley Level: developer 945cd0c2139SMatthew G Knepley 946db781477SPatrick Sanan .seealso: `DMCreate()` 94731266bc0SMatthew G. Knepley @*/ 948cd0c2139SMatthew G Knepley PetscErrorCode DMPlexConstructGhostCells(DM dm, const char labelName[], PetscInt *numGhostCells, DM *dmGhosted) 949cd0c2139SMatthew G Knepley { 950cd0c2139SMatthew G Knepley DM gdm; 951cd0c2139SMatthew G Knepley DMLabel label; 952cd0c2139SMatthew G Knepley const char *name = labelName ? labelName : "Face Sets"; 953412e9a14SMatthew G. Knepley PetscInt dim, Ng = 0; 954b0441da4SMatthew G. Knepley PetscBool useCone, useClosure; 955cd0c2139SMatthew G Knepley 956cd0c2139SMatthew G Knepley PetscFunctionBegin; 957cd0c2139SMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 958dadcf809SJacob Faibussowitsch if (numGhostCells) PetscValidIntPointer(numGhostCells, 3); 959cd0c2139SMatthew G Knepley PetscValidPointer(dmGhosted, 4); 9609566063dSJacob Faibussowitsch PetscCall(DMCreate(PetscObjectComm((PetscObject)dm), &gdm)); 9619566063dSJacob Faibussowitsch PetscCall(DMSetType(gdm, DMPLEX)); 9629566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 9639566063dSJacob Faibussowitsch PetscCall(DMSetDimension(gdm, dim)); 9649566063dSJacob Faibussowitsch PetscCall(DMGetBasicAdjacency(dm, &useCone, &useClosure)); 9659566063dSJacob Faibussowitsch PetscCall(DMSetBasicAdjacency(gdm, useCone, useClosure)); 9669566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, name, &label)); 967cd0c2139SMatthew G Knepley if (!label) { 968cd0c2139SMatthew G Knepley /* Get label for boundary faces */ 9699566063dSJacob Faibussowitsch PetscCall(DMCreateLabel(dm, name)); 9709566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, name, &label)); 9719566063dSJacob Faibussowitsch PetscCall(DMPlexMarkBoundaryFaces(dm, 1, label)); 972cd0c2139SMatthew G Knepley } 9739566063dSJacob Faibussowitsch PetscCall(DMPlexConstructGhostCells_Internal(dm, label, &Ng, gdm)); 9749566063dSJacob Faibussowitsch PetscCall(DMCopyDisc(dm, gdm)); 9759566063dSJacob Faibussowitsch PetscCall(DMPlexCopy_Internal(dm, PETSC_TRUE, gdm)); 976cad26855SMatthew G. Knepley gdm->setfromoptionscalled = dm->setfromoptionscalled; 977d80ece95SMatthew G. Knepley if (numGhostCells) *numGhostCells = Ng; 978cd0c2139SMatthew G Knepley *dmGhosted = gdm; 979cd0c2139SMatthew G Knepley PetscFunctionReturn(0); 980cd0c2139SMatthew G Knepley } 981cd0c2139SMatthew G Knepley 982accc9626SMatthew G. Knepley static PetscErrorCode DivideCells_Private(DM dm, DMLabel label, DMPlexPointQueue queue) 983accc9626SMatthew G. Knepley { 984accc9626SMatthew G. Knepley PetscInt dim, d, shift = 100, *pStart, *pEnd; 985accc9626SMatthew G. Knepley 986accc9626SMatthew G. Knepley PetscFunctionBegin; 987accc9626SMatthew G. Knepley PetscCall(DMGetDimension(dm, &dim)); 988accc9626SMatthew G. Knepley PetscCall(PetscMalloc2(dim, &pStart, dim, &pEnd)); 989accc9626SMatthew G. Knepley for (d = 0; d < dim; ++d) { 990accc9626SMatthew G. Knepley PetscCall(DMPlexGetDepthStratum(dm, d, &pStart[d], &pEnd[d])); 991accc9626SMatthew G. Knepley } 992accc9626SMatthew G. Knepley while (!DMPlexPointQueueEmpty(queue)) { 993accc9626SMatthew G. Knepley PetscInt cell = -1; 994accc9626SMatthew G. Knepley PetscInt *closure = NULL; 995accc9626SMatthew G. Knepley PetscInt closureSize, cl, cval; 996accc9626SMatthew G. Knepley 997accc9626SMatthew G. Knepley PetscCall(DMPlexPointQueueDequeue(queue, &cell)); 998accc9626SMatthew G. Knepley PetscCall(DMLabelGetValue(label, cell, &cval)); 999accc9626SMatthew G. Knepley PetscCall(DMPlexGetTransitiveClosure(dm, cell, PETSC_TRUE, &closureSize, &closure)); 1000accc9626SMatthew G. Knepley /* Mark points in the cell closure that touch the fault */ 1001accc9626SMatthew G. Knepley for (d = 0; d < dim; ++d) { 1002accc9626SMatthew G. Knepley for (cl = 0; cl < closureSize*2; cl += 2) { 1003accc9626SMatthew G. Knepley const PetscInt clp = closure[cl]; 1004accc9626SMatthew G. Knepley PetscInt clval; 1005accc9626SMatthew G. Knepley 1006accc9626SMatthew G. Knepley if ((clp < pStart[d]) || (clp >= pEnd[d])) continue; 1007accc9626SMatthew G. Knepley PetscCall(DMLabelGetValue(label, clp, &clval)); 1008accc9626SMatthew G. Knepley if (clval == -1) { 1009accc9626SMatthew G. Knepley const PetscInt *cone; 1010accc9626SMatthew G. Knepley PetscInt coneSize, c; 1011accc9626SMatthew G. Knepley 1012accc9626SMatthew G. Knepley /* If a cone point touches the fault, then this point touches the fault */ 1013accc9626SMatthew G. Knepley PetscCall(DMPlexGetCone(dm, clp, &cone)); 1014accc9626SMatthew G. Knepley PetscCall(DMPlexGetConeSize(dm, clp, &coneSize)); 1015accc9626SMatthew G. Knepley for (c = 0; c < coneSize; ++c) { 1016accc9626SMatthew G. Knepley PetscInt cpval; 1017accc9626SMatthew G. Knepley 1018accc9626SMatthew G. Knepley PetscCall(DMLabelGetValue(label, cone[c], &cpval)); 1019accc9626SMatthew G. Knepley if (cpval != -1) { 1020accc9626SMatthew G. Knepley PetscInt dep; 1021accc9626SMatthew G. Knepley 1022accc9626SMatthew G. Knepley PetscCall(DMPlexGetPointDepth(dm, clp, &dep)); 1023accc9626SMatthew G. Knepley clval = cval < 0 ? -(shift+dep) : shift+dep; 1024accc9626SMatthew G. Knepley PetscCall(DMLabelSetValue(label, clp, clval)); 1025accc9626SMatthew G. Knepley break; 1026accc9626SMatthew G. Knepley } 1027accc9626SMatthew G. Knepley } 1028accc9626SMatthew G. Knepley } 1029accc9626SMatthew G. Knepley /* Mark neighbor cells through marked faces (these cells must also touch the fault) */ 1030accc9626SMatthew G. Knepley if (d == dim-1 && clval != -1) { 1031accc9626SMatthew G. Knepley const PetscInt *support; 1032accc9626SMatthew G. Knepley PetscInt supportSize, s, nval; 1033accc9626SMatthew G. Knepley 1034accc9626SMatthew G. Knepley PetscCall(DMPlexGetSupport(dm, clp, &support)); 1035accc9626SMatthew G. Knepley PetscCall(DMPlexGetSupportSize(dm, clp, &supportSize)); 1036accc9626SMatthew G. Knepley for (s = 0; s < supportSize; ++s) { 1037accc9626SMatthew G. Knepley PetscCall(DMLabelGetValue(label, support[s], &nval)); 1038accc9626SMatthew G. Knepley if (nval == -1) { 1039accc9626SMatthew G. Knepley PetscCall(DMLabelSetValue(label, support[s], clval < 0 ? clval-1 : clval+1)); 1040accc9626SMatthew G. Knepley PetscCall(DMPlexPointQueueEnqueue(queue, support[s])); 1041accc9626SMatthew G. Knepley } 1042accc9626SMatthew G. Knepley } 1043accc9626SMatthew G. Knepley } 1044accc9626SMatthew G. Knepley } 1045accc9626SMatthew G. Knepley } 1046accc9626SMatthew G. Knepley PetscCall(DMPlexRestoreTransitiveClosure(dm, cell, PETSC_TRUE, &closureSize, &closure)); 1047accc9626SMatthew G. Knepley } 1048accc9626SMatthew G. Knepley PetscCall(PetscFree2(pStart, pEnd)); 1049accc9626SMatthew G. Knepley PetscFunctionReturn(0); 1050accc9626SMatthew G. Knepley } 1051accc9626SMatthew G. Knepley 1052accc9626SMatthew G. Knepley typedef struct { 1053accc9626SMatthew G. Knepley DM dm; 1054accc9626SMatthew G. Knepley DMPlexPointQueue queue; 1055accc9626SMatthew G. Knepley } PointDivision; 1056accc9626SMatthew G. Knepley 1057accc9626SMatthew G. Knepley static PetscErrorCode divideCell(DMLabel label, PetscInt p, PetscInt val, void *ctx) 1058accc9626SMatthew G. Knepley { 1059accc9626SMatthew G. Knepley PointDivision *div = (PointDivision *) ctx; 1060accc9626SMatthew G. Knepley PetscInt cval = val < 0 ? val-1 : val+1; 1061accc9626SMatthew G. Knepley const PetscInt *support; 1062accc9626SMatthew G. Knepley PetscInt supportSize, s; 1063accc9626SMatthew G. Knepley 1064accc9626SMatthew G. Knepley PetscFunctionBegin; 1065accc9626SMatthew G. Knepley PetscCall(DMPlexGetSupport(div->dm, p, &support)); 1066accc9626SMatthew G. Knepley PetscCall(DMPlexGetSupportSize(div->dm, p, &supportSize)); 1067accc9626SMatthew G. Knepley for (s = 0; s < supportSize; ++s) { 1068accc9626SMatthew G. Knepley PetscCall(DMLabelSetValue(label, support[s], cval)); 1069accc9626SMatthew G. Knepley PetscCall(DMPlexPointQueueEnqueue(div->queue, support[s])); 1070accc9626SMatthew G. Knepley } 1071accc9626SMatthew G. Knepley PetscFunctionReturn(0); 1072accc9626SMatthew G. Knepley } 1073accc9626SMatthew G. Knepley 1074accc9626SMatthew G. Knepley /* Mark cells by label propagation */ 1075accc9626SMatthew G. Knepley static PetscErrorCode DMPlexLabelFaultHalo(DM dm, DMLabel faultLabel) 1076accc9626SMatthew G. Knepley { 1077accc9626SMatthew G. Knepley DMPlexPointQueue queue = NULL; 1078accc9626SMatthew G. Knepley PointDivision div; 1079accc9626SMatthew G. Knepley PetscSF pointSF; 1080accc9626SMatthew G. Knepley IS pointIS; 1081accc9626SMatthew G. Knepley const PetscInt *points; 1082accc9626SMatthew G. Knepley PetscBool empty; 1083accc9626SMatthew G. Knepley PetscInt dim, shift = 100, n, i; 1084accc9626SMatthew G. Knepley 1085accc9626SMatthew G. Knepley PetscFunctionBegin; 1086accc9626SMatthew G. Knepley PetscCall(DMGetDimension(dm, &dim)); 1087accc9626SMatthew G. Knepley PetscCall(DMPlexPointQueueCreate(1024, &queue)); 1088accc9626SMatthew G. Knepley div.dm = dm; 1089accc9626SMatthew G. Knepley div.queue = queue; 1090accc9626SMatthew G. Knepley /* Enqueue cells on fault */ 1091accc9626SMatthew G. Knepley PetscCall(DMLabelGetStratumIS(faultLabel, shift+dim, &pointIS)); 1092accc9626SMatthew G. Knepley if (pointIS) { 1093accc9626SMatthew G. Knepley PetscCall(ISGetLocalSize(pointIS, &n)); 1094accc9626SMatthew G. Knepley PetscCall(ISGetIndices(pointIS, &points)); 1095accc9626SMatthew G. Knepley for (i = 0; i < n; ++i) {PetscCall(DMPlexPointQueueEnqueue(queue, points[i]));} 1096accc9626SMatthew G. Knepley PetscCall(ISRestoreIndices(pointIS, &points)); 1097accc9626SMatthew G. Knepley PetscCall(ISDestroy(&pointIS)); 1098accc9626SMatthew G. Knepley } 1099accc9626SMatthew G. Knepley PetscCall(DMLabelGetStratumIS(faultLabel, -(shift+dim), &pointIS)); 1100accc9626SMatthew G. Knepley if (pointIS) { 1101accc9626SMatthew G. Knepley PetscCall(ISGetLocalSize(pointIS, &n)); 1102accc9626SMatthew G. Knepley PetscCall(ISGetIndices(pointIS, &points)); 1103accc9626SMatthew G. Knepley for (i = 0; i < n; ++i) {PetscCall(DMPlexPointQueueEnqueue(queue, points[i]));} 1104accc9626SMatthew G. Knepley PetscCall(ISRestoreIndices(pointIS, &points)); 1105accc9626SMatthew G. Knepley PetscCall(ISDestroy(&pointIS)); 1106accc9626SMatthew G. Knepley } 1107accc9626SMatthew G. Knepley 1108accc9626SMatthew G. Knepley PetscCall(DMGetPointSF(dm, &pointSF)); 1109accc9626SMatthew G. Knepley PetscCall(DMLabelPropagateBegin(faultLabel, pointSF)); 1110accc9626SMatthew G. Knepley /* While edge queue is not empty: */ 1111accc9626SMatthew G. Knepley PetscCall(DMPlexPointQueueEmptyCollective((PetscObject) dm, queue, &empty)); 1112accc9626SMatthew G. Knepley while (!empty) { 1113accc9626SMatthew G. Knepley PetscCall(DivideCells_Private(dm, faultLabel, queue)); 1114accc9626SMatthew G. Knepley PetscCall(DMLabelPropagatePush(faultLabel, pointSF, divideCell, &div)); 1115accc9626SMatthew G. Knepley PetscCall(DMPlexPointQueueEmptyCollective((PetscObject) dm, queue, &empty)); 1116accc9626SMatthew G. Knepley } 1117accc9626SMatthew G. Knepley PetscCall(DMLabelPropagateEnd(faultLabel, pointSF)); 1118accc9626SMatthew G. Knepley PetscCall(DMPlexPointQueueDestroy(&queue)); 1119accc9626SMatthew G. Knepley PetscFunctionReturn(0); 1120accc9626SMatthew G. Knepley } 1121accc9626SMatthew G. Knepley 1122607ab7a9SMatthew G. Knepley /* 1123faedd622SMatthew G. Knepley We are adding three kinds of points here: 1124607ab7a9SMatthew G. Knepley Replicated: Copies of points which exist in the mesh, such as vertices identified across a fault 1125faedd622SMatthew G. Knepley Non-replicated: Points which exist on the fault, but are not replicated 1126b6dfa339SMatthew G. Knepley Ghost: These are shared fault faces which are not owned by this process. These do not produce hybrid cells and do not replicate 1127607ab7a9SMatthew G. Knepley Hybrid: Entirely new points, such as cohesive cells 1128a6ae58d1SMatthew G. Knepley 1129a6ae58d1SMatthew G. Knepley When creating subsequent cohesive cells, we shift the old hybrid cells to the end of the numbering at 1130a6ae58d1SMatthew G. Knepley each depth so that the new split/hybrid points can be inserted as a block. 1131607ab7a9SMatthew G. Knepley */ 11327db7e0a7SMatthew G. Knepley static PetscErrorCode DMPlexConstructCohesiveCells_Internal(DM dm, DMLabel label, DMLabel splitLabel, DM sdm) 1133cd0c2139SMatthew G Knepley { 1134cd0c2139SMatthew G Knepley MPI_Comm comm; 1135607ab7a9SMatthew G. Knepley IS valueIS; 1136607ab7a9SMatthew G. Knepley PetscInt numSP = 0; /* The number of depths for which we have replicated points */ 1137607ab7a9SMatthew G. Knepley const PetscInt *values; /* List of depths for which we have replicated points */ 113818c5995bSMatthew G. Knepley IS *splitIS; 113918c5995bSMatthew G. Knepley IS *unsplitIS; 1140b6dfa339SMatthew G. Knepley IS ghostIS; 1141607ab7a9SMatthew G. Knepley PetscInt *numSplitPoints; /* The number of replicated points at each depth */ 114218c5995bSMatthew G. Knepley PetscInt *numUnsplitPoints; /* The number of non-replicated points at each depth which still give rise to hybrid points */ 114336dbac82SMatthew G. Knepley PetscInt *numHybridPoints; /* The number of new hybrid points at each depth */ 114436dbac82SMatthew G. Knepley PetscInt *numHybridPointsOld; /* The number of existing hybrid points at each depth */ 1145b6dfa339SMatthew G. Knepley PetscInt numGhostPoints; /* The number of unowned, shared fault faces */ 1146607ab7a9SMatthew G. Knepley const PetscInt **splitPoints; /* Replicated points for each depth */ 114718c5995bSMatthew G. Knepley const PetscInt **unsplitPoints; /* Non-replicated points for each depth */ 1148b6dfa339SMatthew G. Knepley const PetscInt *ghostPoints; /* Ghost fault faces */ 1149cd0c2139SMatthew G Knepley PetscSection coordSection; 1150cd0c2139SMatthew G Knepley Vec coordinates; 1151cd0c2139SMatthew G Knepley PetscScalar *coords; 1152a6ae58d1SMatthew G. Knepley PetscInt *depthMax; /* The first hybrid point at each depth in the original mesh */ 1153a6ae58d1SMatthew G. Knepley PetscInt *depthEnd; /* The point limit at each depth in the original mesh */ 1154607ab7a9SMatthew G. Knepley PetscInt *depthShift; /* Number of replicated+hybrid points at each depth */ 1155607ab7a9SMatthew G. Knepley PetscInt *pMaxNew; /* The first replicated point at each depth in the new mesh, hybrids come after this */ 1156607ab7a9SMatthew G. Knepley PetscInt *coneNew, *coneONew, *supportNew; 115718c5995bSMatthew G. Knepley PetscInt shift = 100, shift2 = 200, depth = 0, dep, dim, d, sp, maxConeSize, maxSupportSize, maxConeSizeNew, maxSupportSizeNew, numLabels, vStart, vEnd, pEnd, p, v; 1158cd0c2139SMatthew G Knepley 1159cd0c2139SMatthew G Knepley PetscFunctionBegin; 11609566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)dm,&comm)); 11619566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 11629566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepth(dm, &depth)); 11639566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthStratum(dm, 0, &vStart, &vEnd)); 1164412e9a14SMatthew G. Knepley /* We do not want this label automatically computed, instead we compute it here */ 11659566063dSJacob Faibussowitsch PetscCall(DMCreateLabel(sdm, "celltype")); 1166cd0c2139SMatthew G Knepley /* Count split points and add cohesive cells */ 11679566063dSJacob Faibussowitsch PetscCall(DMPlexGetMaxSizes(dm, &maxConeSize, &maxSupportSize)); 11689566063dSJacob Faibussowitsch PetscCall(PetscMalloc5(depth+1,&depthMax,depth+1,&depthEnd,2*(depth+1),&depthShift,depth+1,&pMaxNew,depth+1,&numHybridPointsOld)); 11699566063dSJacob Faibussowitsch PetscCall(PetscMalloc7(depth+1,&splitIS,depth+1,&unsplitIS,depth+1,&numSplitPoints,depth+1,&numUnsplitPoints,depth+1,&numHybridPoints,depth+1,&splitPoints,depth+1,&unsplitPoints)); 1170607ab7a9SMatthew G. Knepley for (d = 0; d <= depth; ++d) { 11719566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthStratum(dm, d, NULL, &pMaxNew[d])); 11729566063dSJacob Faibussowitsch PetscCall(DMPlexGetTensorPrismBounds_Internal(dm, d, &depthMax[d], NULL)); 1173a6ae58d1SMatthew G. Knepley depthEnd[d] = pMaxNew[d]; 1174a6ae58d1SMatthew G. Knepley depthMax[d] = depthMax[d] < 0 ? depthEnd[d] : depthMax[d]; 1175607ab7a9SMatthew G. Knepley numSplitPoints[d] = 0; 117618c5995bSMatthew G. Knepley numUnsplitPoints[d] = 0; 1177607ab7a9SMatthew G. Knepley numHybridPoints[d] = 0; 1178a6ae58d1SMatthew G. Knepley numHybridPointsOld[d] = depthMax[d] < 0 ? 0 : depthEnd[d] - depthMax[d]; 1179607ab7a9SMatthew G. Knepley splitPoints[d] = NULL; 118018c5995bSMatthew G. Knepley unsplitPoints[d] = NULL; 118118c5995bSMatthew G. Knepley splitIS[d] = NULL; 118218c5995bSMatthew G. Knepley unsplitIS[d] = NULL; 118359eef20bSToby Isaac /* we are shifting the existing hybrid points with the stratum behind them, so 118459eef20bSToby Isaac * the split comes at the end of the normal points, i.e., at depthMax[d] */ 118559eef20bSToby Isaac depthShift[2*d] = depthMax[d]; 118659eef20bSToby Isaac depthShift[2*d+1] = 0; 1187607ab7a9SMatthew G. Knepley } 1188b6dfa339SMatthew G. Knepley numGhostPoints = 0; 1189b6dfa339SMatthew G. Knepley ghostPoints = NULL; 1190cd0c2139SMatthew G Knepley if (label) { 11919566063dSJacob Faibussowitsch PetscCall(DMLabelGetValueIS(label, &valueIS)); 11929566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(valueIS, &numSP)); 11939566063dSJacob Faibussowitsch PetscCall(ISGetIndices(valueIS, &values)); 1194cd0c2139SMatthew G Knepley } 1195cd0c2139SMatthew G Knepley for (sp = 0; sp < numSP; ++sp) { 1196cd0c2139SMatthew G Knepley const PetscInt dep = values[sp]; 1197cd0c2139SMatthew G Knepley 1198cd0c2139SMatthew G Knepley if ((dep < 0) || (dep > depth)) continue; 11999566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(label, dep, &splitIS[dep])); 120018c5995bSMatthew G. Knepley if (splitIS[dep]) { 12019566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(splitIS[dep], &numSplitPoints[dep])); 12029566063dSJacob Faibussowitsch PetscCall(ISGetIndices(splitIS[dep], &splitPoints[dep])); 120318c5995bSMatthew G. Knepley } 12049566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(label, shift2+dep, &unsplitIS[dep])); 120518c5995bSMatthew G. Knepley if (unsplitIS[dep]) { 12069566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(unsplitIS[dep], &numUnsplitPoints[dep])); 12079566063dSJacob Faibussowitsch PetscCall(ISGetIndices(unsplitIS[dep], &unsplitPoints[dep])); 1208cd0c2139SMatthew G Knepley } 1209cd0c2139SMatthew G Knepley } 1210b6dfa339SMatthew G. Knepley PetscCall(DMLabelGetStratumIS(label, shift2+dim-1, &ghostIS)); 1211b6dfa339SMatthew G. Knepley if (ghostIS) { 1212b6dfa339SMatthew G. Knepley PetscCall(ISGetLocalSize(ghostIS, &numGhostPoints)); 1213b6dfa339SMatthew G. Knepley PetscCall(ISGetIndices(ghostIS, &ghostPoints)); 1214b6dfa339SMatthew G. Knepley } 1215607ab7a9SMatthew G. Knepley /* Calculate number of hybrid points */ 121618c5995bSMatthew G. Knepley for (d = 1; d <= depth; ++d) numHybridPoints[d] = numSplitPoints[d-1] + numUnsplitPoints[d-1]; /* There is a hybrid cell/face/edge for every split face/edge/vertex */ 12172582d50cSToby Isaac for (d = 0; d <= depth; ++d) depthShift[2*d+1] = numSplitPoints[d] + numHybridPoints[d]; 12189566063dSJacob Faibussowitsch PetscCall(DMPlexShiftPointSetUp_Internal(depth,depthShift)); 121959eef20bSToby Isaac /* the end of the points in this stratum that come before the new points: 122059eef20bSToby Isaac * shifting pMaxNew[d] gets the new start of the next stratum, then count back the old hybrid points and the newly 122159eef20bSToby Isaac * added points */ 12222582d50cSToby Isaac for (d = 0; d <= depth; ++d) pMaxNew[d] = DMPlexShiftPoint_Internal(pMaxNew[d],depth,depthShift) - (numHybridPointsOld[d] + numSplitPoints[d] + numHybridPoints[d]); 12239566063dSJacob Faibussowitsch PetscCall(DMPlexShiftSizes_Internal(dm, depthShift, sdm)); 1224cd0c2139SMatthew G Knepley /* Step 3: Set cone/support sizes for new points */ 1225cd0c2139SMatthew G Knepley for (dep = 0; dep <= depth; ++dep) { 1226cd0c2139SMatthew G Knepley for (p = 0; p < numSplitPoints[dep]; ++p) { 1227cd0c2139SMatthew G Knepley const PetscInt oldp = splitPoints[dep][p]; 12282582d50cSToby Isaac const PetscInt newp = DMPlexShiftPoint_Internal(oldp, depth, depthShift) /*oldp + depthOffset[dep]*/; 12294c367dbcSMatthew G. Knepley const PetscInt splitp = p + pMaxNew[dep]; 1230cd0c2139SMatthew G Knepley const PetscInt *support; 1231394c2f0fSMatthew G. Knepley DMPolytopeType ct; 12324c367dbcSMatthew G. Knepley PetscInt coneSize, supportSize, qf, qn, qp, e; 1233cd0c2139SMatthew G Knepley 12349566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, oldp, &coneSize)); 12359566063dSJacob Faibussowitsch PetscCall(DMPlexSetConeSize(sdm, splitp, coneSize)); 12369566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dm, oldp, &supportSize)); 12379566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupportSize(sdm, splitp, supportSize)); 12389566063dSJacob Faibussowitsch PetscCall(DMPlexGetCellType(dm, oldp, &ct)); 12399566063dSJacob Faibussowitsch PetscCall(DMPlexSetCellType(sdm, splitp, ct)); 1240cd0c2139SMatthew G Knepley if (dep == depth-1) { 12414c367dbcSMatthew G. Knepley const PetscInt hybcell = p + pMaxNew[dep+1] + numSplitPoints[dep+1]; 12424c367dbcSMatthew G. Knepley 1243cd0c2139SMatthew G Knepley /* Add cohesive cells, they are prisms */ 12449566063dSJacob Faibussowitsch PetscCall(DMPlexSetConeSize(sdm, hybcell, 2 + coneSize)); 1245412e9a14SMatthew G. Knepley switch (coneSize) { 12469566063dSJacob Faibussowitsch case 2: PetscCall(DMPlexSetCellType(sdm, hybcell, DM_POLYTOPE_SEG_PRISM_TENSOR));break; 12479566063dSJacob Faibussowitsch case 3: PetscCall(DMPlexSetCellType(sdm, hybcell, DM_POLYTOPE_TRI_PRISM_TENSOR));break; 12489566063dSJacob Faibussowitsch case 4: PetscCall(DMPlexSetCellType(sdm, hybcell, DM_POLYTOPE_QUAD_PRISM_TENSOR));break; 1249412e9a14SMatthew G. Knepley } 1250b6dfa339SMatthew G. Knepley /* Shared fault faces with only one support cell now have two with the cohesive cell */ 1251b6dfa339SMatthew G. Knepley /* TODO Check thaat oldp has rootdegree == 1 */ 1252b6dfa339SMatthew G. Knepley if (supportSize == 1) { 1253b6dfa339SMatthew G. Knepley const PetscInt *support; 1254b6dfa339SMatthew G. Knepley PetscInt val; 1255b6dfa339SMatthew G. Knepley 1256b6dfa339SMatthew G. Knepley PetscCall(DMPlexGetSupport(dm, oldp, &support)); 1257b6dfa339SMatthew G. Knepley PetscCall(DMLabelGetValue(label, support[0], &val)); 1258b6dfa339SMatthew G. Knepley if (val < 0) PetscCall(DMPlexSetSupportSize(sdm, splitp, 2)); 1259b6dfa339SMatthew G. Knepley else PetscCall(DMPlexSetSupportSize(sdm, newp, 2)); 1260b6dfa339SMatthew G. Knepley } 1261cd0c2139SMatthew G Knepley } else if (dep == 0) { 12624c367dbcSMatthew G. Knepley const PetscInt hybedge = p + pMaxNew[dep+1] + numSplitPoints[dep+1]; 1263cd0c2139SMatthew G Knepley 12649566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(dm, oldp, &support)); 12654c367dbcSMatthew G. Knepley for (e = 0, qn = 0, qp = 0, qf = 0; e < supportSize; ++e) { 1266cd0c2139SMatthew G Knepley PetscInt val; 1267cd0c2139SMatthew G Knepley 12689566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, support[e], &val)); 12694c367dbcSMatthew G. Knepley if (val == 1) ++qf; 12704c367dbcSMatthew G. Knepley if ((val == 1) || (val == (shift + 1))) ++qn; 12714c367dbcSMatthew G. Knepley if ((val == 1) || (val == -(shift + 1))) ++qp; 1272cd0c2139SMatthew G Knepley } 12734c367dbcSMatthew G. Knepley /* Split old vertex: Edges into original vertex and new cohesive edge */ 12749566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupportSize(sdm, newp, qn+1)); 12754c367dbcSMatthew G. Knepley /* Split new vertex: Edges into split vertex and new cohesive edge */ 12769566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupportSize(sdm, splitp, qp+1)); 12774c367dbcSMatthew G. Knepley /* Add hybrid edge */ 12789566063dSJacob Faibussowitsch PetscCall(DMPlexSetConeSize(sdm, hybedge, 2)); 12799566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupportSize(sdm, hybedge, qf)); 12809566063dSJacob Faibussowitsch PetscCall(DMPlexSetCellType(sdm, hybedge, DM_POLYTOPE_POINT_PRISM_TENSOR)); 1281cd0c2139SMatthew G Knepley } else if (dep == dim-2) { 12824c367dbcSMatthew G. Knepley const PetscInt hybface = p + pMaxNew[dep+1] + numSplitPoints[dep+1]; 12834c367dbcSMatthew G. Knepley 12849566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(dm, oldp, &support)); 12854c367dbcSMatthew G. Knepley for (e = 0, qn = 0, qp = 0, qf = 0; e < supportSize; ++e) { 1286cd0c2139SMatthew G Knepley PetscInt val; 1287cd0c2139SMatthew G Knepley 12889566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, support[e], &val)); 12894c367dbcSMatthew G. Knepley if (val == dim-1) ++qf; 12904c367dbcSMatthew G. Knepley if ((val == dim-1) || (val == (shift + dim-1))) ++qn; 12914c367dbcSMatthew G. Knepley if ((val == dim-1) || (val == -(shift + dim-1))) ++qp; 1292cd0c2139SMatthew G Knepley } 12934c367dbcSMatthew G. Knepley /* Split old edge: Faces into original edge and cohesive face (positive side?) */ 12949566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupportSize(sdm, newp, qn+1)); 12954c367dbcSMatthew G. Knepley /* Split new edge: Faces into split edge and cohesive face (negative side?) */ 12969566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupportSize(sdm, splitp, qp+1)); 12974c367dbcSMatthew G. Knepley /* Add hybrid face */ 12989566063dSJacob Faibussowitsch PetscCall(DMPlexSetConeSize(sdm, hybface, 4)); 12999566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupportSize(sdm, hybface, qf)); 13009566063dSJacob Faibussowitsch PetscCall(DMPlexSetCellType(sdm, hybface, DM_POLYTOPE_SEG_PRISM_TENSOR)); 1301cd0c2139SMatthew G Knepley } 1302cd0c2139SMatthew G Knepley } 1303cd0c2139SMatthew G Knepley } 130418c5995bSMatthew G. Knepley for (dep = 0; dep <= depth; ++dep) { 130518c5995bSMatthew G. Knepley for (p = 0; p < numUnsplitPoints[dep]; ++p) { 130618c5995bSMatthew G. Knepley const PetscInt oldp = unsplitPoints[dep][p]; 13072582d50cSToby Isaac const PetscInt newp = DMPlexShiftPoint_Internal(oldp, depth, depthShift) /*oldp + depthOffset[dep]*/; 130818c5995bSMatthew G. Knepley const PetscInt *support; 1309da1dd7e4SMatthew G. Knepley PetscInt coneSize, supportSize, qf, e, s; 131018c5995bSMatthew G. Knepley 13119566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, oldp, &coneSize)); 13129566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dm, oldp, &supportSize)); 13139566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(dm, oldp, &support)); 131418c5995bSMatthew G. Knepley if (dep == 0) { 131518c5995bSMatthew G. Knepley const PetscInt hybedge = p + pMaxNew[dep+1] + numSplitPoints[dep+1] + numSplitPoints[dep]; 131618c5995bSMatthew G. Knepley 131739254ff6SMatthew G. Knepley /* Unsplit vertex: Edges into original vertex, split edges, and new cohesive edge twice */ 131839254ff6SMatthew G. Knepley for (s = 0, qf = 0; s < supportSize; ++s, ++qf) { 13199566063dSJacob Faibussowitsch PetscCall(PetscFindInt(support[s], numSplitPoints[dep+1], splitPoints[dep+1], &e)); 132039254ff6SMatthew G. Knepley if (e >= 0) ++qf; 132139254ff6SMatthew G. Knepley } 13229566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupportSize(sdm, newp, qf+2)); 132318c5995bSMatthew G. Knepley /* Add hybrid edge */ 13249566063dSJacob Faibussowitsch PetscCall(DMPlexSetConeSize(sdm, hybedge, 2)); 1325e1757548SMatthew G. Knepley for (e = 0, qf = 0; e < supportSize; ++e) { 1326e1757548SMatthew G. Knepley PetscInt val; 1327e1757548SMatthew G. Knepley 13289566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, support[e], &val)); 1329e1757548SMatthew G. Knepley /* Split and unsplit edges produce hybrid faces */ 1330da1dd7e4SMatthew G. Knepley if (val == 1) ++qf; 1331da1dd7e4SMatthew G. Knepley if (val == (shift2 + 1)) ++qf; 1332e1757548SMatthew G. Knepley } 13339566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupportSize(sdm, hybedge, qf)); 13349566063dSJacob Faibussowitsch PetscCall(DMPlexSetCellType(sdm, hybedge, DM_POLYTOPE_POINT_PRISM_TENSOR)); 133518c5995bSMatthew G. Knepley } else if (dep == dim-2) { 133618c5995bSMatthew G. Knepley const PetscInt hybface = p + pMaxNew[dep+1] + numSplitPoints[dep+1] + numSplitPoints[dep]; 1337cd0c2139SMatthew G Knepley PetscInt val; 1338cd0c2139SMatthew G Knepley 1339da1dd7e4SMatthew G. Knepley for (e = 0, qf = 0; e < supportSize; ++e) { 13409566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, support[e], &val)); 1341da1dd7e4SMatthew G. Knepley if (val == dim-1) qf += 2; 1342da1dd7e4SMatthew G. Knepley else ++qf; 1343cd0c2139SMatthew G Knepley } 134418c5995bSMatthew G. Knepley /* Unsplit edge: Faces into original edge, split face, and cohesive face twice */ 13459566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupportSize(sdm, newp, qf+2)); 134618c5995bSMatthew G. Knepley /* Add hybrid face */ 1347da1dd7e4SMatthew G. Knepley for (e = 0, qf = 0; e < supportSize; ++e) { 13489566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, support[e], &val)); 1349da1dd7e4SMatthew G. Knepley if (val == dim-1) ++qf; 1350da1dd7e4SMatthew G. Knepley } 13519566063dSJacob Faibussowitsch PetscCall(DMPlexSetConeSize(sdm, hybface, 4)); 13529566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupportSize(sdm, hybface, qf)); 13539566063dSJacob Faibussowitsch PetscCall(DMPlexSetCellType(sdm, hybface, DM_POLYTOPE_SEG_PRISM_TENSOR)); 1354cd0c2139SMatthew G Knepley } 1355cd0c2139SMatthew G Knepley } 1356cd0c2139SMatthew G Knepley } 1357cd0c2139SMatthew G Knepley /* Step 4: Setup split DM */ 13589566063dSJacob Faibussowitsch PetscCall(DMSetUp(sdm)); 13599566063dSJacob Faibussowitsch PetscCall(DMPlexShiftPoints_Internal(dm, depthShift, sdm)); 13609566063dSJacob Faibussowitsch PetscCall(DMPlexGetMaxSizes(sdm, &maxConeSizeNew, &maxSupportSizeNew)); 13619566063dSJacob Faibussowitsch PetscCall(PetscMalloc3(PetscMax(maxConeSize, maxConeSizeNew)*3,&coneNew,PetscMax(maxConeSize, maxConeSizeNew)*3,&coneONew,PetscMax(maxSupportSize, maxSupportSizeNew),&supportNew)); 1362cd0c2139SMatthew G Knepley /* Step 6: Set cones and supports for new points */ 1363cd0c2139SMatthew G Knepley for (dep = 0; dep <= depth; ++dep) { 1364cd0c2139SMatthew G Knepley for (p = 0; p < numSplitPoints[dep]; ++p) { 1365cd0c2139SMatthew G Knepley const PetscInt oldp = splitPoints[dep][p]; 13662582d50cSToby Isaac const PetscInt newp = DMPlexShiftPoint_Internal(oldp, depth, depthShift) /*oldp + depthOffset[dep]*/; 13674c367dbcSMatthew G. Knepley const PetscInt splitp = p + pMaxNew[dep]; 1368cd0c2139SMatthew G Knepley const PetscInt *cone, *support, *ornt; 1369b5a892a1SMatthew G. Knepley DMPolytopeType ct; 13704c367dbcSMatthew G. Knepley PetscInt coneSize, supportSize, q, qf, qn, qp, v, e, s; 1371cd0c2139SMatthew G Knepley 13729566063dSJacob Faibussowitsch PetscCall(DMPlexGetCellType(dm, oldp, &ct)); 13739566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, oldp, &coneSize)); 13749566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, oldp, &cone)); 13759566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeOrientation(dm, oldp, &ornt)); 13769566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dm, oldp, &supportSize)); 13779566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(dm, oldp, &support)); 1378cd0c2139SMatthew G Knepley if (dep == depth-1) { 137996a07cd0SMatthew G. Knepley PetscBool hasUnsplit = PETSC_FALSE; 13804c367dbcSMatthew G. Knepley const PetscInt hybcell = p + pMaxNew[dep+1] + numSplitPoints[dep+1]; 1381cd0c2139SMatthew G Knepley const PetscInt *supportF; 1382cd0c2139SMatthew G Knepley 1383b6dfa339SMatthew G. Knepley coneONew[0] = coneONew[1] = -1000; 1384cd0c2139SMatthew G Knepley /* Split face: copy in old face to new face to start */ 13859566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(sdm, newp, &supportF)); 13869566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupport(sdm, splitp, supportF)); 1387cd0c2139SMatthew G Knepley /* Split old face: old vertices/edges in cone so no change */ 1388cd0c2139SMatthew G Knepley /* Split new face: new vertices/edges in cone */ 1389cd0c2139SMatthew G Knepley for (q = 0; q < coneSize; ++q) { 13909566063dSJacob Faibussowitsch PetscCall(PetscFindInt(cone[q], numSplitPoints[dep-1], splitPoints[dep-1], &v)); 139118c5995bSMatthew G. Knepley if (v < 0) { 13929566063dSJacob Faibussowitsch PetscCall(PetscFindInt(cone[q], numUnsplitPoints[dep-1], unsplitPoints[dep-1], &v)); 139363a3b9bcSJacob Faibussowitsch PetscCheck(v >= 0,PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Could not locate point %" PetscInt_FMT " in split or unsplit points of depth %" PetscInt_FMT, cone[q], dep-1); 13942582d50cSToby Isaac coneNew[2+q] = DMPlexShiftPoint_Internal(cone[q], depth, depthShift) /*cone[q] + depthOffset[dep-1]*/; 139596a07cd0SMatthew G. Knepley hasUnsplit = PETSC_TRUE; 139618c5995bSMatthew G. Knepley } else { 13974c367dbcSMatthew G. Knepley coneNew[2+q] = v + pMaxNew[dep-1]; 1398163235baSMatthew G. Knepley if (dep > 1) { 1399163235baSMatthew G. Knepley const PetscInt *econe; 1400163235baSMatthew G. Knepley PetscInt econeSize, r, vs, vu; 1401163235baSMatthew G. Knepley 14029566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, cone[q], &econeSize)); 14039566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, cone[q], &econe)); 1404163235baSMatthew G. Knepley for (r = 0; r < econeSize; ++r) { 14059566063dSJacob Faibussowitsch PetscCall(PetscFindInt(econe[r], numSplitPoints[dep-2], splitPoints[dep-2], &vs)); 14069566063dSJacob Faibussowitsch PetscCall(PetscFindInt(econe[r], numUnsplitPoints[dep-2], unsplitPoints[dep-2], &vu)); 1407163235baSMatthew G. Knepley if (vs >= 0) continue; 140863a3b9bcSJacob Faibussowitsch PetscCheck(vu >= 0,PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Could not locate point %" PetscInt_FMT " in split or unsplit points of depth %" PetscInt_FMT, econe[r], dep-2); 1409163235baSMatthew G. Knepley hasUnsplit = PETSC_TRUE; 1410163235baSMatthew G. Knepley } 1411163235baSMatthew G. Knepley } 1412cd0c2139SMatthew G Knepley } 1413cd0c2139SMatthew G Knepley } 14149566063dSJacob Faibussowitsch PetscCall(DMPlexSetCone(sdm, splitp, &coneNew[2])); 14159566063dSJacob Faibussowitsch PetscCall(DMPlexSetConeOrientation(sdm, splitp, ornt)); 1416e537020bSMatthew G. Knepley /* Face support */ 1417b6dfa339SMatthew G. Knepley PetscInt vals[2]; 1418cd0c2139SMatthew G Knepley 1419b6dfa339SMatthew G. Knepley PetscCall(DMLabelGetValue(label, support[0], &vals[0])); 1420b6dfa339SMatthew G. Knepley if (supportSize > 1) PetscCall(DMLabelGetValue(label, support[1], &vals[1])); 1421b6dfa339SMatthew G. Knepley else vals[1] = -vals[0]; 1422b6dfa339SMatthew G. Knepley PetscCheck(vals[0]*vals[1] < 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid support labels %" PetscInt_FMT " %" PetscInt_FMT, vals[0], vals[1]); 1423b6dfa339SMatthew G. Knepley 1424b6dfa339SMatthew G. Knepley for (s = 0; s < 2; ++s) { 1425b6dfa339SMatthew G. Knepley if (s >= supportSize) { 1426b6dfa339SMatthew G. Knepley if (vals[s] < 0) { 1427b6dfa339SMatthew G. Knepley /* Ghost old face: Replace negative side cell with cohesive cell */ 1428accc9626SMatthew G. Knepley PetscCall(DMPlexInsertSupport(sdm, newp, s, hybcell)); 1429b6dfa339SMatthew G. Knepley } else { 1430b6dfa339SMatthew G. Knepley /* Ghost new face: Replace positive side cell with cohesive cell */ 1431accc9626SMatthew G. Knepley PetscCall(DMPlexInsertSupport(sdm, splitp, s, hybcell)); 1432b6dfa339SMatthew G. Knepley } 1433b6dfa339SMatthew G. Knepley } else { 1434b6dfa339SMatthew G. Knepley if (vals[s] < 0) { 1435cd0c2139SMatthew G Knepley /* Split old face: Replace negative side cell with cohesive cell */ 14369566063dSJacob Faibussowitsch PetscCall(DMPlexInsertSupport(sdm, newp, s, hybcell)); 1437cd0c2139SMatthew G Knepley } else { 1438cd0c2139SMatthew G Knepley /* Split new face: Replace positive side cell with cohesive cell */ 14399566063dSJacob Faibussowitsch PetscCall(DMPlexInsertSupport(sdm, splitp, s, hybcell)); 1440b6dfa339SMatthew G. Knepley } 1441b6dfa339SMatthew G. Knepley } 1442b6dfa339SMatthew G. Knepley } 1443b6dfa339SMatthew G. Knepley /* Get orientation for cohesive face using the positive side cell */ 1444e537020bSMatthew G. Knepley { 1445e537020bSMatthew G. Knepley const PetscInt *ncone, *nconeO; 1446b6dfa339SMatthew G. Knepley PetscInt nconeSize, nc, ocell; 1447accc9626SMatthew G. Knepley PetscBool flip = PETSC_FALSE; 1448e537020bSMatthew G. Knepley 1449b6dfa339SMatthew G. Knepley if (supportSize > 1) {ocell = vals[0] < 0 ? support[1] : support[0];} 1450b6dfa339SMatthew G. Knepley else {ocell = support[0]; flip = vals[0] < 0 ? PETSC_TRUE : PETSC_FALSE;} 1451b6dfa339SMatthew G. Knepley PetscCall(DMPlexGetConeSize(dm, ocell, &nconeSize)); 1452b6dfa339SMatthew G. Knepley PetscCall(DMPlexGetCone(dm, ocell, &ncone)); 1453*e1a13daeSMatthew G. Knepley PetscCall(DMPlexGetConeOrientation(dm, ocell, &nconeO)); 1454e537020bSMatthew G. Knepley for (nc = 0; nc < nconeSize; ++nc) { 1455e537020bSMatthew G. Knepley if (ncone[nc] == oldp) { 1456b6dfa339SMatthew G. Knepley coneONew[0] = flip ? -(nconeO[nc]+1) : nconeO[nc]; 1457e537020bSMatthew G. Knepley break; 1458cd0c2139SMatthew G Knepley } 1459cd0c2139SMatthew G Knepley } 1460b6dfa339SMatthew G. Knepley PetscCheck(nc < nconeSize, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Could not locate face %" PetscInt_FMT " in neighboring cell %" PetscInt_FMT, oldp, ocell); 1461e537020bSMatthew G. Knepley } 14624c367dbcSMatthew G. Knepley /* Cohesive cell: Old and new split face, then new cohesive faces */ 1463b6dfa339SMatthew G. Knepley { 1464b6dfa339SMatthew G. Knepley const PetscInt No = DMPolytopeTypeGetNumArrangments(ct)/2; 1465b6dfa339SMatthew G. Knepley PetscCheck((coneONew[0] >= -No) && (coneONew[0] < No), PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid %s orientation %" PetscInt_FMT, DMPolytopeTypes[ct], coneONew[0]); 1466b6dfa339SMatthew G. Knepley } 1467b5a892a1SMatthew G. Knepley const PetscInt *arr = DMPolytopeTypeGetArrangment(ct, coneONew[0]); 1468b5a892a1SMatthew G. Knepley 1469fd4b9f15SMatthew G. Knepley coneNew[0] = newp; /* Extracted negative side orientation above */ 14704c367dbcSMatthew G. Knepley coneNew[1] = splitp; 14714c367dbcSMatthew G. Knepley coneONew[1] = coneONew[0]; 1472e537020bSMatthew G. Knepley for (q = 0; q < coneSize; ++q) { 1473412e9a14SMatthew G. Knepley /* Hybrid faces must follow order from oriented end face */ 1474b5a892a1SMatthew G. Knepley const PetscInt qa = arr[q*2+0]; 1475b5a892a1SMatthew G. Knepley const PetscInt qo = arr[q*2+1]; 1476b5a892a1SMatthew G. Knepley DMPolytopeType ft = dep == 2 ? DM_POLYTOPE_SEGMENT : DM_POLYTOPE_POINT; 1477412e9a14SMatthew G. Knepley 14789566063dSJacob Faibussowitsch PetscCall(PetscFindInt(cone[qa], numSplitPoints[dep-1], splitPoints[dep-1], &v)); 147918c5995bSMatthew G. Knepley if (v < 0) { 14809566063dSJacob Faibussowitsch PetscCall(PetscFindInt(cone[qa], numUnsplitPoints[dep-1], unsplitPoints[dep-1], &v)); 148118c5995bSMatthew G. Knepley coneNew[2+q] = v + pMaxNew[dep] + numSplitPoints[dep] + numSplitPoints[dep-1]; 148218c5995bSMatthew G. Knepley } else { 148318c5995bSMatthew G. Knepley coneNew[2+q] = v + pMaxNew[dep] + numSplitPoints[dep]; 148418c5995bSMatthew G. Knepley } 1485b5a892a1SMatthew G. Knepley coneONew[2+q] = DMPolytopeTypeComposeOrientation(ft, qo, ornt[qa]); 1486e537020bSMatthew G. Knepley } 14879566063dSJacob Faibussowitsch PetscCall(DMPlexSetCone(sdm, hybcell, coneNew)); 14889566063dSJacob Faibussowitsch PetscCall(DMPlexSetConeOrientation(sdm, hybcell, coneONew)); 148996a07cd0SMatthew G. Knepley /* Label the hybrid cells on the boundary of the split */ 14909566063dSJacob Faibussowitsch if (hasUnsplit) PetscCall(DMLabelSetValue(label, -hybcell, dim)); 1491cd0c2139SMatthew G Knepley } else if (dep == 0) { 14924c367dbcSMatthew G. Knepley const PetscInt hybedge = p + pMaxNew[dep+1] + numSplitPoints[dep+1]; 1493cd0c2139SMatthew G Knepley 1494cd0c2139SMatthew G Knepley /* Split old vertex: Edges in old split faces and new cohesive edge */ 14954c367dbcSMatthew G. Knepley for (e = 0, qn = 0; e < supportSize; ++e) { 1496cd0c2139SMatthew G Knepley PetscInt val; 1497cd0c2139SMatthew G Knepley 14989566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, support[e], &val)); 1499cd0c2139SMatthew G Knepley if ((val == 1) || (val == (shift + 1))) { 15002582d50cSToby Isaac supportNew[qn++] = DMPlexShiftPoint_Internal(support[e], depth, depthShift) /*support[e] + depthOffset[dep+1]*/; 1501cd0c2139SMatthew G Knepley } 1502cd0c2139SMatthew G Knepley } 15034c367dbcSMatthew G. Knepley supportNew[qn] = hybedge; 15049566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupport(sdm, newp, supportNew)); 1505cd0c2139SMatthew G Knepley /* Split new vertex: Edges in new split faces and new cohesive edge */ 15064c367dbcSMatthew G. Knepley for (e = 0, qp = 0; e < supportSize; ++e) { 1507cd0c2139SMatthew G Knepley PetscInt val, edge; 1508cd0c2139SMatthew G Knepley 15099566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, support[e], &val)); 1510cd0c2139SMatthew G Knepley if (val == 1) { 15119566063dSJacob Faibussowitsch PetscCall(PetscFindInt(support[e], numSplitPoints[dep+1], splitPoints[dep+1], &edge)); 151263a3b9bcSJacob Faibussowitsch PetscCheck(edge >= 0,comm, PETSC_ERR_ARG_WRONG, "Edge %" PetscInt_FMT " is not a split edge", support[e]); 15134c367dbcSMatthew G. Knepley supportNew[qp++] = edge + pMaxNew[dep+1]; 1514cd0c2139SMatthew G Knepley } else if (val == -(shift + 1)) { 15152582d50cSToby Isaac supportNew[qp++] = DMPlexShiftPoint_Internal(support[e], depth, depthShift) /*support[e] + depthOffset[dep+1]*/; 1516cd0c2139SMatthew G Knepley } 1517cd0c2139SMatthew G Knepley } 15184c367dbcSMatthew G. Knepley supportNew[qp] = hybedge; 15199566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupport(sdm, splitp, supportNew)); 15204c367dbcSMatthew G. Knepley /* Hybrid edge: Old and new split vertex */ 1521cd0c2139SMatthew G Knepley coneNew[0] = newp; 1522cd0c2139SMatthew G Knepley coneNew[1] = splitp; 15239566063dSJacob Faibussowitsch PetscCall(DMPlexSetCone(sdm, hybedge, coneNew)); 15244c367dbcSMatthew G. Knepley for (e = 0, qf = 0; e < supportSize; ++e) { 15254c367dbcSMatthew G. Knepley PetscInt val, edge; 15264c367dbcSMatthew G. Knepley 15279566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, support[e], &val)); 15284c367dbcSMatthew G. Knepley if (val == 1) { 15299566063dSJacob Faibussowitsch PetscCall(PetscFindInt(support[e], numSplitPoints[dep+1], splitPoints[dep+1], &edge)); 153063a3b9bcSJacob Faibussowitsch PetscCheck(edge >= 0,comm, PETSC_ERR_ARG_WRONG, "Edge %" PetscInt_FMT " is not a split edge", support[e]); 15314c367dbcSMatthew G. Knepley supportNew[qf++] = edge + pMaxNew[dep+2] + numSplitPoints[dep+2]; 15324c367dbcSMatthew G. Knepley } 15334c367dbcSMatthew G. Knepley } 15349566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupport(sdm, hybedge, supportNew)); 1535cd0c2139SMatthew G Knepley } else if (dep == dim-2) { 15364c367dbcSMatthew G. Knepley const PetscInt hybface = p + pMaxNew[dep+1] + numSplitPoints[dep+1]; 15374c367dbcSMatthew G. Knepley 1538cd0c2139SMatthew G Knepley /* Split old edge: old vertices in cone so no change */ 1539cd0c2139SMatthew G Knepley /* Split new edge: new vertices in cone */ 1540cd0c2139SMatthew G Knepley for (q = 0; q < coneSize; ++q) { 15419566063dSJacob Faibussowitsch PetscCall(PetscFindInt(cone[q], numSplitPoints[dep-1], splitPoints[dep-1], &v)); 1542e1757548SMatthew G. Knepley if (v < 0) { 15439566063dSJacob Faibussowitsch PetscCall(PetscFindInt(cone[q], numUnsplitPoints[dep-1], unsplitPoints[dep-1], &v)); 154463a3b9bcSJacob Faibussowitsch PetscCheck(v >= 0,PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Could not locate point %" PetscInt_FMT " in split or unsplit points of depth %" PetscInt_FMT, cone[q], dep-1); 15452582d50cSToby Isaac coneNew[q] = DMPlexShiftPoint_Internal(cone[q], depth, depthShift) /*cone[q] + depthOffset[dep-1]*/; 1546e1757548SMatthew G. Knepley } else { 15474c367dbcSMatthew G. Knepley coneNew[q] = v + pMaxNew[dep-1]; 1548cd0c2139SMatthew G Knepley } 1549e1757548SMatthew G. Knepley } 15509566063dSJacob Faibussowitsch PetscCall(DMPlexSetCone(sdm, splitp, coneNew)); 1551cd0c2139SMatthew G Knepley /* Split old edge: Faces in positive side cells and old split faces */ 1552cd0c2139SMatthew G Knepley for (e = 0, q = 0; e < supportSize; ++e) { 1553cd0c2139SMatthew G Knepley PetscInt val; 1554cd0c2139SMatthew G Knepley 15559566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, support[e], &val)); 15564c367dbcSMatthew G. Knepley if (val == dim-1) { 15572582d50cSToby Isaac supportNew[q++] = DMPlexShiftPoint_Internal(support[e], depth, depthShift) /*support[e] + depthOffset[dep+1]*/; 15584c367dbcSMatthew G. Knepley } else if (val == (shift + dim-1)) { 15592582d50cSToby Isaac supportNew[q++] = DMPlexShiftPoint_Internal(support[e], depth, depthShift) /*support[e] + depthOffset[dep+1]*/; 1560cd0c2139SMatthew G Knepley } 1561cd0c2139SMatthew G Knepley } 1562b279cd2aSMatthew G. Knepley supportNew[q++] = p + pMaxNew[dep+1] + numSplitPoints[dep+1]; 15639566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupport(sdm, newp, supportNew)); 1564cd0c2139SMatthew G Knepley /* Split new edge: Faces in negative side cells and new split faces */ 1565cd0c2139SMatthew G Knepley for (e = 0, q = 0; e < supportSize; ++e) { 1566cd0c2139SMatthew G Knepley PetscInt val, face; 1567cd0c2139SMatthew G Knepley 15689566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, support[e], &val)); 1569cd0c2139SMatthew G Knepley if (val == dim-1) { 15709566063dSJacob Faibussowitsch PetscCall(PetscFindInt(support[e], numSplitPoints[dep+1], splitPoints[dep+1], &face)); 157163a3b9bcSJacob Faibussowitsch PetscCheck(face >= 0,comm, PETSC_ERR_ARG_WRONG, "Face %" PetscInt_FMT " is not a split face", support[e]); 15724c367dbcSMatthew G. Knepley supportNew[q++] = face + pMaxNew[dep+1]; 1573cd0c2139SMatthew G Knepley } else if (val == -(shift + dim-1)) { 15742582d50cSToby Isaac supportNew[q++] = DMPlexShiftPoint_Internal(support[e], depth, depthShift) /*support[e] + depthOffset[dep+1]*/; 1575cd0c2139SMatthew G Knepley } 1576cd0c2139SMatthew G Knepley } 1577b279cd2aSMatthew G. Knepley supportNew[q++] = p + pMaxNew[dep+1] + numSplitPoints[dep+1]; 15789566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupport(sdm, splitp, supportNew)); 15794c367dbcSMatthew G. Knepley /* Hybrid face */ 15804c367dbcSMatthew G. Knepley coneNew[0] = newp; 15814c367dbcSMatthew G. Knepley coneNew[1] = splitp; 15824c367dbcSMatthew G. Knepley for (v = 0; v < coneSize; ++v) { 15834c367dbcSMatthew G. Knepley PetscInt vertex; 15849566063dSJacob Faibussowitsch PetscCall(PetscFindInt(cone[v], numSplitPoints[dep-1], splitPoints[dep-1], &vertex)); 1585e1757548SMatthew G. Knepley if (vertex < 0) { 15869566063dSJacob Faibussowitsch PetscCall(PetscFindInt(cone[v], numUnsplitPoints[dep-1], unsplitPoints[dep-1], &vertex)); 158763a3b9bcSJacob Faibussowitsch PetscCheck(vertex >= 0,PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Could not locate point %" PetscInt_FMT " in split or unsplit points of depth %" PetscInt_FMT, cone[v], dep-1); 1588e1757548SMatthew G. Knepley coneNew[2+v] = vertex + pMaxNew[dep] + numSplitPoints[dep] + numSplitPoints[dep-1]; 1589e1757548SMatthew G. Knepley } else { 15904c367dbcSMatthew G. Knepley coneNew[2+v] = vertex + pMaxNew[dep] + numSplitPoints[dep]; 15914c367dbcSMatthew G. Knepley } 1592e1757548SMatthew G. Knepley } 15939566063dSJacob Faibussowitsch PetscCall(DMPlexSetCone(sdm, hybface, coneNew)); 15944c367dbcSMatthew G. Knepley for (e = 0, qf = 0; e < supportSize; ++e) { 15954c367dbcSMatthew G. Knepley PetscInt val, face; 15964c367dbcSMatthew G. Knepley 15979566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, support[e], &val)); 15984c367dbcSMatthew G. Knepley if (val == dim-1) { 15999566063dSJacob Faibussowitsch PetscCall(PetscFindInt(support[e], numSplitPoints[dep+1], splitPoints[dep+1], &face)); 160063a3b9bcSJacob Faibussowitsch PetscCheck(face >= 0,comm, PETSC_ERR_ARG_WRONG, "Face %" PetscInt_FMT " is not a split face", support[e]); 16014c367dbcSMatthew G. Knepley supportNew[qf++] = face + pMaxNew[dep+2] + numSplitPoints[dep+2]; 16024c367dbcSMatthew G. Knepley } 16034c367dbcSMatthew G. Knepley } 16049566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupport(sdm, hybface, supportNew)); 1605cd0c2139SMatthew G Knepley } 1606cd0c2139SMatthew G Knepley } 1607cd0c2139SMatthew G Knepley } 160818c5995bSMatthew G. Knepley for (dep = 0; dep <= depth; ++dep) { 160918c5995bSMatthew G. Knepley for (p = 0; p < numUnsplitPoints[dep]; ++p) { 161018c5995bSMatthew G. Knepley const PetscInt oldp = unsplitPoints[dep][p]; 16112582d50cSToby Isaac const PetscInt newp = DMPlexShiftPoint_Internal(oldp, depth, depthShift) /*oldp + depthOffset[dep]*/; 1612b5a892a1SMatthew G. Knepley const PetscInt *cone, *support; 1613e1757548SMatthew G. Knepley PetscInt coneSize, supportSize, supportSizeNew, q, qf, e, f, s; 161418c5995bSMatthew G. Knepley 16159566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, oldp, &coneSize)); 16169566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, oldp, &cone)); 16179566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dm, oldp, &supportSize)); 16189566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(dm, oldp, &support)); 161918c5995bSMatthew G. Knepley if (dep == 0) { 162018c5995bSMatthew G. Knepley const PetscInt hybedge = p + pMaxNew[dep+1] + numSplitPoints[dep+1] + numSplitPoints[dep]; 162118c5995bSMatthew G. Knepley 162218c5995bSMatthew G. Knepley /* Unsplit vertex */ 16239566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(sdm, newp, &supportSizeNew)); 162418c5995bSMatthew G. Knepley for (s = 0, q = 0; s < supportSize; ++s) { 16252582d50cSToby Isaac supportNew[q++] = DMPlexShiftPoint_Internal(support[s], depth, depthShift) /*support[s] + depthOffset[dep+1]*/; 16269566063dSJacob Faibussowitsch PetscCall(PetscFindInt(support[s], numSplitPoints[dep+1], splitPoints[dep+1], &e)); 162718c5995bSMatthew G. Knepley if (e >= 0) { 162818c5995bSMatthew G. Knepley supportNew[q++] = e + pMaxNew[dep+1]; 162918c5995bSMatthew G. Knepley } 163018c5995bSMatthew G. Knepley } 163118c5995bSMatthew G. Knepley supportNew[q++] = hybedge; 163218c5995bSMatthew G. Knepley supportNew[q++] = hybedge; 163363a3b9bcSJacob Faibussowitsch PetscCheck(q == supportSizeNew,comm, PETSC_ERR_ARG_WRONG, "Support size %" PetscInt_FMT " != %" PetscInt_FMT " for vertex %" PetscInt_FMT, q, supportSizeNew, newp); 16349566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupport(sdm, newp, supportNew)); 163518c5995bSMatthew G. Knepley /* Hybrid edge */ 163618c5995bSMatthew G. Knepley coneNew[0] = newp; 163718c5995bSMatthew G. Knepley coneNew[1] = newp; 16389566063dSJacob Faibussowitsch PetscCall(DMPlexSetCone(sdm, hybedge, coneNew)); 163918c5995bSMatthew G. Knepley for (e = 0, qf = 0; e < supportSize; ++e) { 164018c5995bSMatthew G. Knepley PetscInt val, edge; 164118c5995bSMatthew G. Knepley 16429566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, support[e], &val)); 164318c5995bSMatthew G. Knepley if (val == 1) { 16449566063dSJacob Faibussowitsch PetscCall(PetscFindInt(support[e], numSplitPoints[dep+1], splitPoints[dep+1], &edge)); 164563a3b9bcSJacob Faibussowitsch PetscCheck(edge >= 0,comm, PETSC_ERR_ARG_WRONG, "Edge %" PetscInt_FMT " is not a split edge", support[e]); 164618c5995bSMatthew G. Knepley supportNew[qf++] = edge + pMaxNew[dep+2] + numSplitPoints[dep+2]; 1647e1757548SMatthew G. Knepley } else if (val == (shift2 + 1)) { 16489566063dSJacob Faibussowitsch PetscCall(PetscFindInt(support[e], numUnsplitPoints[dep+1], unsplitPoints[dep+1], &edge)); 164963a3b9bcSJacob Faibussowitsch PetscCheck(edge >= 0,comm, PETSC_ERR_ARG_WRONG, "Edge %" PetscInt_FMT " is not a unsplit edge", support[e]); 1650e1757548SMatthew G. Knepley supportNew[qf++] = edge + pMaxNew[dep+2] + numSplitPoints[dep+2] + numSplitPoints[dep+1]; 165118c5995bSMatthew G. Knepley } 165218c5995bSMatthew G. Knepley } 16539566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupport(sdm, hybedge, supportNew)); 1654e1757548SMatthew G. Knepley } else if (dep == dim-2) { 1655e1757548SMatthew G. Knepley const PetscInt hybface = p + pMaxNew[dep+1] + numSplitPoints[dep+1] + numSplitPoints[dep]; 1656e1757548SMatthew G. Knepley 1657da1dd7e4SMatthew G. Knepley /* Unsplit edge: Faces into original edge, split face, and hybrid face twice */ 1658e1757548SMatthew G. Knepley for (f = 0, qf = 0; f < supportSize; ++f) { 1659e1757548SMatthew G. Knepley PetscInt val, face; 1660e1757548SMatthew G. Knepley 16619566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, support[f], &val)); 1662e1757548SMatthew G. Knepley if (val == dim-1) { 16639566063dSJacob Faibussowitsch PetscCall(PetscFindInt(support[f], numSplitPoints[dep+1], splitPoints[dep+1], &face)); 166463a3b9bcSJacob Faibussowitsch PetscCheck(face >= 0,comm, PETSC_ERR_ARG_WRONG, "Face %" PetscInt_FMT " is not a split face", support[f]); 16652582d50cSToby Isaac supportNew[qf++] = DMPlexShiftPoint_Internal(support[f], depth, depthShift) /*support[f] + depthOffset[dep+1]*/; 1666e1757548SMatthew G. Knepley supportNew[qf++] = face + pMaxNew[dep+1]; 1667e1757548SMatthew G. Knepley } else { 16682582d50cSToby Isaac supportNew[qf++] = DMPlexShiftPoint_Internal(support[f], depth, depthShift) /*support[f] + depthOffset[dep+1]*/; 1669e1757548SMatthew G. Knepley } 1670e1757548SMatthew G. Knepley } 1671e1757548SMatthew G. Knepley supportNew[qf++] = hybface; 1672e1757548SMatthew G. Knepley supportNew[qf++] = hybface; 16739566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(sdm, newp, &supportSizeNew)); 167463a3b9bcSJacob Faibussowitsch PetscCheck(qf == supportSizeNew,PETSC_COMM_SELF, PETSC_ERR_PLIB, "Support size for unsplit edge %" PetscInt_FMT " is %" PetscInt_FMT " != %" PetscInt_FMT, newp, qf, supportSizeNew); 16759566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupport(sdm, newp, supportNew)); 1676e1757548SMatthew G. Knepley /* Add hybrid face */ 1677e1757548SMatthew G. Knepley coneNew[0] = newp; 1678212cc919SMatthew G. Knepley coneNew[1] = newp; 16799566063dSJacob Faibussowitsch PetscCall(PetscFindInt(cone[0], numUnsplitPoints[dep-1], unsplitPoints[dep-1], &v)); 168063a3b9bcSJacob Faibussowitsch PetscCheck(v >= 0,comm, PETSC_ERR_ARG_WRONG, "Vertex %" PetscInt_FMT " is not an unsplit vertex", cone[0]); 1681212cc919SMatthew G. Knepley coneNew[2] = v + pMaxNew[dep] + numSplitPoints[dep] + numSplitPoints[dep-1]; 16829566063dSJacob Faibussowitsch PetscCall(PetscFindInt(cone[1], numUnsplitPoints[dep-1], unsplitPoints[dep-1], &v)); 168363a3b9bcSJacob Faibussowitsch PetscCheck(v >= 0,comm, PETSC_ERR_ARG_WRONG, "Vertex %" PetscInt_FMT " is not an unsplit vertex", cone[1]); 1684e1757548SMatthew G. Knepley coneNew[3] = v + pMaxNew[dep] + numSplitPoints[dep] + numSplitPoints[dep-1]; 16859566063dSJacob Faibussowitsch PetscCall(DMPlexSetCone(sdm, hybface, coneNew)); 1686da1dd7e4SMatthew G. Knepley for (f = 0, qf = 0; f < supportSize; ++f) { 1687da1dd7e4SMatthew G. Knepley PetscInt val, face; 1688da1dd7e4SMatthew G. Knepley 16899566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, support[f], &val)); 1690da1dd7e4SMatthew G. Knepley if (val == dim-1) { 16919566063dSJacob Faibussowitsch PetscCall(PetscFindInt(support[f], numSplitPoints[dep+1], splitPoints[dep+1], &face)); 1692da1dd7e4SMatthew G. Knepley supportNew[qf++] = face + pMaxNew[dep+2] + numSplitPoints[dep+2]; 1693da1dd7e4SMatthew G. Knepley } 1694da1dd7e4SMatthew G. Knepley } 16959566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(sdm, hybface, &supportSizeNew)); 169663a3b9bcSJacob Faibussowitsch PetscCheck(qf == supportSizeNew,PETSC_COMM_SELF, PETSC_ERR_PLIB, "Support size for hybrid face %" PetscInt_FMT " is %" PetscInt_FMT " != %" PetscInt_FMT, hybface, qf, supportSizeNew); 16979566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupport(sdm, hybface, supportNew)); 1698cd0c2139SMatthew G Knepley } 1699cd0c2139SMatthew G Knepley } 1700cd0c2139SMatthew G Knepley } 1701cd0c2139SMatthew G Knepley /* Step 6b: Replace split points in negative side cones */ 1702cd0c2139SMatthew G Knepley for (sp = 0; sp < numSP; ++sp) { 1703cd0c2139SMatthew G Knepley PetscInt dep = values[sp]; 1704cd0c2139SMatthew G Knepley IS pIS; 1705cd0c2139SMatthew G Knepley PetscInt numPoints; 1706cd0c2139SMatthew G Knepley const PetscInt *points; 1707cd0c2139SMatthew G Knepley 1708cd0c2139SMatthew G Knepley if (dep >= 0) continue; 17099566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(label, dep, &pIS)); 1710cd0c2139SMatthew G Knepley if (!pIS) continue; 1711cd0c2139SMatthew G Knepley dep = -dep - shift; 17129566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(pIS, &numPoints)); 17139566063dSJacob Faibussowitsch PetscCall(ISGetIndices(pIS, &points)); 1714cd0c2139SMatthew G Knepley for (p = 0; p < numPoints; ++p) { 1715cd0c2139SMatthew G Knepley const PetscInt oldp = points[p]; 17162582d50cSToby Isaac const PetscInt newp = DMPlexShiftPoint_Internal(oldp, depth, depthShift) /*depthOffset[dep] + oldp*/; 1717cd0c2139SMatthew G Knepley const PetscInt *cone; 1718cd0c2139SMatthew G Knepley PetscInt coneSize, c; 171950cf782dSMatthew G. Knepley /* PetscBool replaced = PETSC_FALSE; */ 1720cd0c2139SMatthew G Knepley 1721cd0c2139SMatthew G Knepley /* Negative edge: replace split vertex */ 1722cd0c2139SMatthew G Knepley /* Negative cell: replace split face */ 17239566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(sdm, newp, &coneSize)); 17249566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(sdm, newp, &cone)); 1725cd0c2139SMatthew G Knepley for (c = 0; c < coneSize; ++c) { 1726e38fbfedSToby Isaac const PetscInt coldp = DMPlexShiftPointInverse_Internal(cone[c],depth,depthShift); 1727cd0c2139SMatthew G Knepley PetscInt csplitp, cp, val; 1728cd0c2139SMatthew G Knepley 17299566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, coldp, &val)); 1730cd0c2139SMatthew G Knepley if (val == dep-1) { 17319566063dSJacob Faibussowitsch PetscCall(PetscFindInt(coldp, numSplitPoints[dep-1], splitPoints[dep-1], &cp)); 173263a3b9bcSJacob Faibussowitsch PetscCheck(cp >= 0,comm, PETSC_ERR_ARG_WRONG, "Point %" PetscInt_FMT " is not a split point of dimension %" PetscInt_FMT, oldp, dep-1); 1733cd0c2139SMatthew G Knepley csplitp = pMaxNew[dep-1] + cp; 17349566063dSJacob Faibussowitsch PetscCall(DMPlexInsertCone(sdm, newp, c, csplitp)); 173550cf782dSMatthew G. Knepley /* replaced = PETSC_TRUE; */ 1736cd0c2139SMatthew G Knepley } 1737cd0c2139SMatthew G Knepley } 17384a189a86SMatthew G. Knepley /* Cells with only a vertex or edge on the submesh have no replacement */ 173928b400f6SJacob Faibussowitsch /* PetscCheck(replaced,comm, PETSC_ERR_ARG_WRONG, "The cone of point %d does not contain split points", oldp); */ 1740cd0c2139SMatthew G Knepley } 17419566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(pIS, &points)); 17429566063dSJacob Faibussowitsch PetscCall(ISDestroy(&pIS)); 1743cd0c2139SMatthew G Knepley } 1744fa8e8ae5SToby Isaac /* Step 7: Coordinates */ 17459566063dSJacob Faibussowitsch PetscCall(DMPlexShiftCoordinates_Internal(dm, depthShift, sdm)); 17469566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateSection(sdm, &coordSection)); 17479566063dSJacob Faibussowitsch PetscCall(DMGetCoordinatesLocal(sdm, &coordinates)); 17489566063dSJacob Faibussowitsch PetscCall(VecGetArray(coordinates, &coords)); 1749cd0c2139SMatthew G Knepley for (v = 0; v < (numSplitPoints ? numSplitPoints[0] : 0); ++v) { 17502582d50cSToby Isaac const PetscInt newp = DMPlexShiftPoint_Internal(splitPoints[0][v], depth, depthShift) /*depthOffset[0] + splitPoints[0][v]*/; 1751cd0c2139SMatthew G Knepley const PetscInt splitp = pMaxNew[0] + v; 1752cd0c2139SMatthew G Knepley PetscInt dof, off, soff, d; 1753cd0c2139SMatthew G Knepley 17549566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(coordSection, newp, &dof)); 17559566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(coordSection, newp, &off)); 17569566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(coordSection, splitp, &soff)); 1757cd0c2139SMatthew G Knepley for (d = 0; d < dof; ++d) coords[soff+d] = coords[off+d]; 1758cd0c2139SMatthew G Knepley } 17599566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(coordinates, &coords)); 1760fa8e8ae5SToby Isaac /* Step 8: SF, if I can figure this out we can split the mesh in parallel */ 17619566063dSJacob Faibussowitsch PetscCall(DMPlexShiftSF_Internal(dm, depthShift, sdm)); 1762b6dfa339SMatthew G. Knepley /* TODO We need to associate the ghost points with the correct replica */ 1763fa8e8ae5SToby Isaac /* Step 9: Labels */ 17649566063dSJacob Faibussowitsch PetscCall(DMPlexShiftLabels_Internal(dm, depthShift, sdm)); 17659566063dSJacob Faibussowitsch PetscCall(DMPlexCreateVTKLabel_Internal(dm, PETSC_FALSE, sdm)); 17669566063dSJacob Faibussowitsch PetscCall(DMGetNumLabels(sdm, &numLabels)); 1767cd0c2139SMatthew G Knepley for (dep = 0; dep <= depth; ++dep) { 1768cd0c2139SMatthew G Knepley for (p = 0; p < numSplitPoints[dep]; ++p) { 17692582d50cSToby Isaac const PetscInt newp = DMPlexShiftPoint_Internal(splitPoints[dep][p], depth, depthShift) /*depthOffset[dep] + splitPoints[dep][p]*/; 1770cd0c2139SMatthew G Knepley const PetscInt splitp = pMaxNew[dep] + p; 1771cd0c2139SMatthew G Knepley PetscInt l; 1772cd0c2139SMatthew G Knepley 17737db7e0a7SMatthew G. Knepley if (splitLabel) { 17747db7e0a7SMatthew G. Knepley const PetscInt val = 100 + dep; 17757db7e0a7SMatthew G. Knepley 17769566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(splitLabel, newp, val)); 17779566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(splitLabel, splitp, -val)); 17787db7e0a7SMatthew G. Knepley } 1779cd0c2139SMatthew G Knepley for (l = 0; l < numLabels; ++l) { 1780cd0c2139SMatthew G Knepley DMLabel mlabel; 1781cd0c2139SMatthew G Knepley const char *lname; 1782cd0c2139SMatthew G Knepley PetscInt val; 17839a356370SMatthew G. Knepley PetscBool isDepth; 1784cd0c2139SMatthew G Knepley 17859566063dSJacob Faibussowitsch PetscCall(DMGetLabelName(sdm, l, &lname)); 17869566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(lname, "depth", &isDepth)); 17879a356370SMatthew G. Knepley if (isDepth) continue; 17889566063dSJacob Faibussowitsch PetscCall(DMGetLabel(sdm, lname, &mlabel)); 17899566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(mlabel, newp, &val)); 1790cd0c2139SMatthew G Knepley if (val >= 0) { 17919566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(mlabel, splitp, val)); 1792cd0c2139SMatthew G Knepley } 1793cd0c2139SMatthew G Knepley } 1794cd0c2139SMatthew G Knepley } 1795cd0c2139SMatthew G Knepley } 1796cd0c2139SMatthew G Knepley for (sp = 0; sp < numSP; ++sp) { 1797cd0c2139SMatthew G Knepley const PetscInt dep = values[sp]; 1798cd0c2139SMatthew G Knepley 1799cd0c2139SMatthew G Knepley if ((dep < 0) || (dep > depth)) continue; 18009566063dSJacob Faibussowitsch if (splitIS[dep]) PetscCall(ISRestoreIndices(splitIS[dep], &splitPoints[dep])); 18019566063dSJacob Faibussowitsch PetscCall(ISDestroy(&splitIS[dep])); 18029566063dSJacob Faibussowitsch if (unsplitIS[dep]) PetscCall(ISRestoreIndices(unsplitIS[dep], &unsplitPoints[dep])); 18039566063dSJacob Faibussowitsch PetscCall(ISDestroy(&unsplitIS[dep])); 1804cd0c2139SMatthew G Knepley } 1805b6dfa339SMatthew G. Knepley if (ghostIS) PetscCall(ISRestoreIndices(ghostIS, &ghostPoints)); 1806b6dfa339SMatthew G. Knepley PetscCall(ISDestroy(&ghostIS)); 1807cd0c2139SMatthew G Knepley if (label) { 18089566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(valueIS, &values)); 18099566063dSJacob Faibussowitsch PetscCall(ISDestroy(&valueIS)); 1810cd0c2139SMatthew G Knepley } 18110d4d4d06SMatthew G. Knepley for (d = 0; d <= depth; ++d) { 18129566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthStratum(sdm, d, NULL, &pEnd)); 181336dbac82SMatthew G. Knepley pMaxNew[d] = pEnd - numHybridPoints[d] - numHybridPointsOld[d]; 18140d4d4d06SMatthew G. Knepley } 18159566063dSJacob Faibussowitsch PetscCall(PetscFree3(coneNew, coneONew, supportNew)); 18169566063dSJacob Faibussowitsch PetscCall(PetscFree5(depthMax, depthEnd, depthShift, pMaxNew, numHybridPointsOld)); 18179566063dSJacob Faibussowitsch PetscCall(PetscFree7(splitIS, unsplitIS, numSplitPoints, numUnsplitPoints, numHybridPoints, splitPoints, unsplitPoints)); 1818cd0c2139SMatthew G Knepley PetscFunctionReturn(0); 1819cd0c2139SMatthew G Knepley } 1820cd0c2139SMatthew G Knepley 1821cd0c2139SMatthew G Knepley /*@C 1822cd0c2139SMatthew G Knepley DMPlexConstructCohesiveCells - Construct cohesive cells which split the face along an internal interface 1823cd0c2139SMatthew G Knepley 1824cd0c2139SMatthew G Knepley Collective on dm 1825cd0c2139SMatthew G Knepley 1826cd0c2139SMatthew G Knepley Input Parameters: 1827cd0c2139SMatthew G Knepley + dm - The original DM 182853156dfcSMatthew G. Knepley - label - The label specifying the boundary faces (this could be auto-generated) 1829cd0c2139SMatthew G Knepley 1830cd0c2139SMatthew G Knepley Output Parameters: 18317db7e0a7SMatthew G. Knepley + splitLabel - The label containing the split points, or NULL if no output is desired 1832cd0c2139SMatthew G Knepley - dmSplit - The new DM 1833cd0c2139SMatthew G Knepley 1834cd0c2139SMatthew G Knepley Level: developer 1835cd0c2139SMatthew G Knepley 1836db781477SPatrick Sanan .seealso: `DMCreate()`, `DMPlexLabelCohesiveComplete()` 1837cd0c2139SMatthew G Knepley @*/ 18387db7e0a7SMatthew G. Knepley PetscErrorCode DMPlexConstructCohesiveCells(DM dm, DMLabel label, DMLabel splitLabel, DM *dmSplit) 1839cd0c2139SMatthew G Knepley { 1840cd0c2139SMatthew G Knepley DM sdm; 1841cd0c2139SMatthew G Knepley PetscInt dim; 1842cd0c2139SMatthew G Knepley 1843cd0c2139SMatthew G Knepley PetscFunctionBegin; 1844cd0c2139SMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 1845064a246eSJacob Faibussowitsch PetscValidPointer(dmSplit, 4); 18469566063dSJacob Faibussowitsch PetscCall(DMCreate(PetscObjectComm((PetscObject)dm), &sdm)); 18479566063dSJacob Faibussowitsch PetscCall(DMSetType(sdm, DMPLEX)); 18489566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 18499566063dSJacob Faibussowitsch PetscCall(DMSetDimension(sdm, dim)); 1850cd0c2139SMatthew G Knepley switch (dim) { 1851cd0c2139SMatthew G Knepley case 2: 1852cd0c2139SMatthew G Knepley case 3: 18539566063dSJacob Faibussowitsch PetscCall(DMPlexConstructCohesiveCells_Internal(dm, label, splitLabel, sdm)); 1854cd0c2139SMatthew G Knepley break; 1855cd0c2139SMatthew G Knepley default: 185663a3b9bcSJacob Faibussowitsch SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Cannot construct cohesive cells for dimension %" PetscInt_FMT, dim); 1857cd0c2139SMatthew G Knepley } 1858cd0c2139SMatthew G Knepley *dmSplit = sdm; 1859cd0c2139SMatthew G Knepley PetscFunctionReturn(0); 1860cd0c2139SMatthew G Knepley } 1861cd0c2139SMatthew G Knepley 18620f66a230SMatthew G. Knepley /* Returns the side of the surface for a given cell with a face on the surface */ 18630f66a230SMatthew G. Knepley static PetscErrorCode GetSurfaceSide_Static(DM dm, DM subdm, PetscInt numSubpoints, const PetscInt *subpoints, PetscInt cell, PetscInt face, PetscBool *pos) 18640f66a230SMatthew G. Knepley { 18650f66a230SMatthew G. Knepley const PetscInt *cone, *ornt; 18660f66a230SMatthew G. Knepley PetscInt dim, coneSize, c; 18670f66a230SMatthew G. Knepley 18680f66a230SMatthew G. Knepley PetscFunctionBegin; 18690f66a230SMatthew G. Knepley *pos = PETSC_TRUE; 18709566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 18719566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, cell, &coneSize)); 18729566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, cell, &cone)); 18739566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeOrientation(dm, cell, &ornt)); 18740f66a230SMatthew G. Knepley for (c = 0; c < coneSize; ++c) { 18750f66a230SMatthew G. Knepley if (cone[c] == face) { 18760f66a230SMatthew G. Knepley PetscInt o = ornt[c]; 18770f66a230SMatthew G. Knepley 18780f66a230SMatthew G. Knepley if (subdm) { 18790f66a230SMatthew G. Knepley const PetscInt *subcone, *subornt; 18800f66a230SMatthew G. Knepley PetscInt subpoint, subface, subconeSize, sc; 18810f66a230SMatthew G. Knepley 18829566063dSJacob Faibussowitsch PetscCall(PetscFindInt(cell, numSubpoints, subpoints, &subpoint)); 18839566063dSJacob Faibussowitsch PetscCall(PetscFindInt(face, numSubpoints, subpoints, &subface)); 18849566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(subdm, subpoint, &subconeSize)); 18859566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(subdm, subpoint, &subcone)); 18869566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeOrientation(subdm, subpoint, &subornt)); 18870f66a230SMatthew G. Knepley for (sc = 0; sc < subconeSize; ++sc) { 18880f66a230SMatthew G. Knepley if (subcone[sc] == subface) { 18890f66a230SMatthew G. Knepley o = subornt[0]; 18900f66a230SMatthew G. Knepley break; 18910f66a230SMatthew G. Knepley } 18920f66a230SMatthew G. Knepley } 189363a3b9bcSJacob Faibussowitsch PetscCheck(sc < subconeSize,PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Could not find subpoint %" PetscInt_FMT " (%" PetscInt_FMT ") in cone for subpoint %" PetscInt_FMT " (%" PetscInt_FMT ")", subface, face, subpoint, cell); 18940f66a230SMatthew G. Knepley } 18950f66a230SMatthew G. Knepley if (o >= 0) *pos = PETSC_TRUE; 18960f66a230SMatthew G. Knepley else *pos = PETSC_FALSE; 18970f66a230SMatthew G. Knepley break; 18980f66a230SMatthew G. Knepley } 18990f66a230SMatthew G. Knepley } 190063a3b9bcSJacob Faibussowitsch PetscCheck(c != coneSize,PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Cell %" PetscInt_FMT " in split face %" PetscInt_FMT " support does not have it in the cone", cell, face); 19010f66a230SMatthew G. Knepley PetscFunctionReturn(0); 19020f66a230SMatthew G. Knepley } 19030f66a230SMatthew G. Knepley 1904accc9626SMatthew G. Knepley static PetscErrorCode CheckFaultEdge_Private(DM dm, DMLabel label) 1905accc9626SMatthew G. Knepley { 1906accc9626SMatthew G. Knepley IS facePosIS, faceNegIS, dimIS; 1907accc9626SMatthew G. Knepley const PetscInt *points; 1908accc9626SMatthew G. Knepley PetscInt dim, numPoints, p, shift = 100, shift2 = 200; 1909accc9626SMatthew G. Knepley 1910accc9626SMatthew G. Knepley PetscFunctionBegin; 1911accc9626SMatthew G. Knepley PetscCall(DMGetDimension(dm, &dim)); 1912accc9626SMatthew G. Knepley /* If any faces touching the fault divide cells on either side, split them */ 1913accc9626SMatthew G. Knepley PetscCall(DMLabelGetStratumIS(label, shift+dim-1, &facePosIS)); 1914accc9626SMatthew G. Knepley PetscCall(DMLabelGetStratumIS(label, -(shift+dim-1), &faceNegIS)); 1915accc9626SMatthew G. Knepley if (!facePosIS || !faceNegIS) { 1916accc9626SMatthew G. Knepley PetscCall(ISDestroy(&facePosIS)); 1917accc9626SMatthew G. Knepley PetscCall(ISDestroy(&faceNegIS)); 1918accc9626SMatthew G. Knepley PetscFunctionReturn(0); 1919accc9626SMatthew G. Knepley } 1920accc9626SMatthew G. Knepley PetscCall(ISExpand(facePosIS, faceNegIS, &dimIS)); 1921accc9626SMatthew G. Knepley PetscCall(ISDestroy(&facePosIS)); 1922accc9626SMatthew G. Knepley PetscCall(ISDestroy(&faceNegIS)); 1923accc9626SMatthew G. Knepley PetscCall(ISGetLocalSize(dimIS, &numPoints)); 1924accc9626SMatthew G. Knepley PetscCall(ISGetIndices(dimIS, &points)); 1925accc9626SMatthew G. Knepley for (p = 0; p < numPoints; ++p) { 1926accc9626SMatthew G. Knepley const PetscInt point = points[p]; 1927accc9626SMatthew G. Knepley const PetscInt *support; 1928accc9626SMatthew G. Knepley PetscInt supportSize, valA, valB; 1929accc9626SMatthew G. Knepley 1930accc9626SMatthew G. Knepley PetscCall(DMPlexGetSupportSize(dm, point, &supportSize)); 1931accc9626SMatthew G. Knepley if (supportSize != 2) continue; 1932accc9626SMatthew G. Knepley PetscCall(DMPlexGetSupport(dm, point, &support)); 1933accc9626SMatthew G. Knepley PetscCall(DMLabelGetValue(label, support[0], &valA)); 1934accc9626SMatthew G. Knepley PetscCall(DMLabelGetValue(label, support[1], &valB)); 1935accc9626SMatthew G. Knepley if ((valA == -1) || (valB == -1)) continue; 1936accc9626SMatthew G. Knepley if (valA*valB > 0) continue; 1937*e1a13daeSMatthew G. Knepley /* Check that this face is not incident on only unsplit faces, meaning has at least one split face */ 1938*e1a13daeSMatthew G. Knepley { 1939*e1a13daeSMatthew G. Knepley PetscInt *closure = NULL; 1940*e1a13daeSMatthew G. Knepley PetscBool split = PETSC_FALSE; 1941*e1a13daeSMatthew G. Knepley PetscInt closureSize, cl; 1942*e1a13daeSMatthew G. Knepley 1943*e1a13daeSMatthew G. Knepley PetscCall(DMPlexGetTransitiveClosure(dm, point, PETSC_TRUE, &closureSize, &closure)); 1944*e1a13daeSMatthew G. Knepley for (cl = 0; cl < closureSize*2; cl += 2) { 1945*e1a13daeSMatthew G. Knepley PetscCall(DMLabelGetValue(label, closure[cl], &valA)); 1946*e1a13daeSMatthew G. Knepley if ((valA >= 0) && (valA <= dim)) {split = PETSC_TRUE; break;} 1947*e1a13daeSMatthew G. Knepley } 1948*e1a13daeSMatthew G. Knepley PetscCall(DMPlexRestoreTransitiveClosure(dm, point, PETSC_TRUE, &closureSize, &closure)); 1949*e1a13daeSMatthew G. Knepley if (!split) continue; 1950*e1a13daeSMatthew G. Knepley } 1951accc9626SMatthew G. Knepley /* Split the face */ 1952accc9626SMatthew G. Knepley PetscCall(DMLabelGetValue(label, point, &valA)); 1953accc9626SMatthew G. Knepley PetscCall(DMLabelClearValue(label, point, valA)); 1954accc9626SMatthew G. Knepley PetscCall(DMLabelSetValue(label, point, dim-1)); 1955accc9626SMatthew G. Knepley /* Label its closure: 1956accc9626SMatthew G. Knepley unmarked: label as unsplit 1957accc9626SMatthew G. Knepley incident: relabel as split 1958accc9626SMatthew G. Knepley split: do nothing 1959accc9626SMatthew G. Knepley */ 1960accc9626SMatthew G. Knepley { 1961accc9626SMatthew G. Knepley PetscInt *closure = NULL; 1962accc9626SMatthew G. Knepley PetscInt closureSize, cl, dep; 1963accc9626SMatthew G. Knepley 1964accc9626SMatthew G. Knepley PetscCall(DMPlexGetTransitiveClosure(dm, point, PETSC_TRUE, &closureSize, &closure)); 1965accc9626SMatthew G. Knepley for (cl = 0; cl < closureSize*2; cl += 2) { 1966accc9626SMatthew G. Knepley PetscCall(DMLabelGetValue(label, closure[cl], &valA)); 1967accc9626SMatthew G. Knepley if (valA == -1) { /* Mark as unsplit */ 1968accc9626SMatthew G. Knepley PetscCall(DMPlexGetPointDepth(dm, closure[cl], &dep)); 1969accc9626SMatthew G. Knepley PetscCall(DMLabelSetValue(label, closure[cl], shift2+dep)); 1970accc9626SMatthew G. Knepley } else if (((valA >= shift) && (valA < shift2)) || ((valA <= -shift) && (valA > -shift2))) { 1971accc9626SMatthew G. Knepley PetscCall(DMPlexGetPointDepth(dm, closure[cl], &dep)); 1972accc9626SMatthew G. Knepley PetscCall(DMLabelClearValue(label, closure[cl], valA)); 1973accc9626SMatthew G. Knepley PetscCall(DMLabelSetValue(label, closure[cl], dep)); 1974accc9626SMatthew G. Knepley } 1975accc9626SMatthew G. Knepley } 1976accc9626SMatthew G. Knepley PetscCall(DMPlexRestoreTransitiveClosure(dm, point, PETSC_TRUE, &closureSize, &closure)); 1977accc9626SMatthew G. Knepley } 1978accc9626SMatthew G. Knepley } 1979accc9626SMatthew G. Knepley PetscCall(ISRestoreIndices(dimIS, &points)); 1980accc9626SMatthew G. Knepley PetscCall(ISDestroy(&dimIS)); 1981accc9626SMatthew G. Knepley PetscFunctionReturn(0); 1982accc9626SMatthew G. Knepley } 1983accc9626SMatthew G. Knepley 1984cd0c2139SMatthew G Knepley /*@ 19850f66a230SMatthew G. Knepley DMPlexLabelCohesiveComplete - Starting with a label marking points on an internal surface, we add all other mesh pieces 1986cd0c2139SMatthew G Knepley to complete the surface 1987cd0c2139SMatthew G Knepley 1988cd0c2139SMatthew G Knepley Input Parameters: 1989cd0c2139SMatthew G Knepley + dm - The DM 19900f66a230SMatthew G. Knepley . label - A DMLabel marking the surface 19910f66a230SMatthew G. Knepley . blabel - A DMLabel marking the vertices on the boundary which will not be duplicated, or NULL to find them automatically 1992bb55d314SMatthew G. Knepley . flip - Flag to flip the submesh normal and replace points on the other side 199347946fd8SMatthew G. Knepley - subdm - The subDM associated with the label, or NULL 1994cd0c2139SMatthew G Knepley 1995cd0c2139SMatthew G Knepley Output Parameter: 1996cd0c2139SMatthew G Knepley . label - A DMLabel marking all surface points 1997cd0c2139SMatthew G Knepley 19980f66a230SMatthew G. Knepley Note: The vertices in blabel are called "unsplit" in the terminology from hybrid cell creation. 19990f66a230SMatthew G. Knepley 2000cd0c2139SMatthew G Knepley Level: developer 2001cd0c2139SMatthew G Knepley 2002db781477SPatrick Sanan .seealso: `DMPlexConstructCohesiveCells()`, `DMPlexLabelComplete()` 2003cd0c2139SMatthew G Knepley @*/ 20040f66a230SMatthew G. Knepley PetscErrorCode DMPlexLabelCohesiveComplete(DM dm, DMLabel label, DMLabel blabel, PetscBool flip, DM subdm) 2005cd0c2139SMatthew G Knepley { 2006d90583fdSMatthew G. Knepley DMLabel depthLabel; 2007accc9626SMatthew G. Knepley IS dimIS, subpointIS = NULL; 200847946fd8SMatthew G. Knepley const PetscInt *points, *subpoints; 2009bb55d314SMatthew G. Knepley const PetscInt rev = flip ? -1 : 1; 2010accc9626SMatthew G. Knepley PetscInt shift = 100, shift2 = 200, shift3 = 300, dim, depth, numPoints, numSubpoints, p, val; 2011cd0c2139SMatthew G Knepley 2012cd0c2139SMatthew G Knepley PetscFunctionBegin; 20139566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepth(dm, &depth)); 20149566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 20159566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthLabel(dm, &depthLabel)); 201647946fd8SMatthew G. Knepley if (subdm) { 20179566063dSJacob Faibussowitsch PetscCall(DMPlexGetSubpointIS(subdm, &subpointIS)); 201847946fd8SMatthew G. Knepley if (subpointIS) { 20199566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(subpointIS, &numSubpoints)); 20209566063dSJacob Faibussowitsch PetscCall(ISGetIndices(subpointIS, &subpoints)); 202147946fd8SMatthew G. Knepley } 202247946fd8SMatthew G. Knepley } 2023d7c8f101SMatthew G. Knepley /* Mark cell on the fault, and its faces which touch the fault: cell orientation for face gives the side of the fault */ 20249566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(label, dim-1, &dimIS)); 2025accc9626SMatthew G. Knepley if (!dimIS) goto divide; 20269566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(dimIS, &numPoints)); 20279566063dSJacob Faibussowitsch PetscCall(ISGetIndices(dimIS, &points)); 2028d7c8f101SMatthew G. Knepley for (p = 0; p < numPoints; ++p) { /* Loop over fault faces */ 2029cd0c2139SMatthew G Knepley const PetscInt *support; 2030cd0c2139SMatthew G Knepley PetscInt supportSize, s; 2031cd0c2139SMatthew G Knepley 20329566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dm, points[p], &supportSize)); 2033c4419245SMatthew G. Knepley #if 0 2034c4419245SMatthew G. Knepley if (supportSize != 2) { 2035c4419245SMatthew G. Knepley const PetscInt *lp; 2036c4419245SMatthew G. Knepley PetscInt Nlp, pind; 2037c4419245SMatthew G. Knepley 2038c4419245SMatthew G. Knepley /* Check that for a cell with a single support face, that face is in the SF */ 2039c4419245SMatthew G. Knepley /* THis check only works for the remote side. We would need root side information */ 20409566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(dm->sf, NULL, &Nlp, &lp, NULL)); 20419566063dSJacob Faibussowitsch PetscCall(PetscFindInt(points[p], Nlp, lp, &pind)); 204263a3b9bcSJacob Faibussowitsch PetscCheck(pind >= 0,PetscObjectComm((PetscObject) dm), PETSC_ERR_ARG_WRONG, "Split face %" PetscInt_FMT " has %" PetscInt_FMT " != 2 supports, and the face is not shared with another process", points[p], supportSize); 2043c4419245SMatthew G. Knepley } 2044c4419245SMatthew G. Knepley #endif 20459566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(dm, points[p], &support)); 2046cd0c2139SMatthew G Knepley for (s = 0; s < supportSize; ++s) { 20470f66a230SMatthew G. Knepley const PetscInt *cone; 2048cd0c2139SMatthew G Knepley PetscInt coneSize, c; 20490f66a230SMatthew G. Knepley PetscBool pos; 2050cd0c2139SMatthew G Knepley 20519566063dSJacob Faibussowitsch PetscCall(GetSurfaceSide_Static(dm, subdm, numSubpoints, subpoints, support[s], points[p], &pos)); 20529566063dSJacob Faibussowitsch if (pos) PetscCall(DMLabelSetValue(label, support[s], rev*(shift+dim))); 20539566063dSJacob Faibussowitsch else PetscCall(DMLabelSetValue(label, support[s], -rev*(shift+dim))); 20540f66a230SMatthew G. Knepley if (rev < 0) pos = !pos ? PETSC_TRUE : PETSC_FALSE; 20550f66a230SMatthew G. Knepley /* Put faces touching the fault in the label */ 20569566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, support[s], &coneSize)); 20579566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, support[s], &cone)); 2058cd0c2139SMatthew G Knepley for (c = 0; c < coneSize; ++c) { 2059cd0c2139SMatthew G Knepley const PetscInt point = cone[c]; 2060cd0c2139SMatthew G Knepley 20619566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, point, &val)); 2062cd0c2139SMatthew G Knepley if (val == -1) { 2063cd0c2139SMatthew G Knepley PetscInt *closure = NULL; 2064cd0c2139SMatthew G Knepley PetscInt closureSize, cl; 2065cd0c2139SMatthew G Knepley 20669566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(dm, point, PETSC_TRUE, &closureSize, &closure)); 2067cd0c2139SMatthew G Knepley for (cl = 0; cl < closureSize*2; cl += 2) { 2068cd0c2139SMatthew G Knepley const PetscInt clp = closure[cl]; 2069a0541d8aSMatthew G. Knepley PetscInt bval = -1; 2070cd0c2139SMatthew G Knepley 20719566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, clp, &val)); 20729566063dSJacob Faibussowitsch if (blabel) PetscCall(DMLabelGetValue(blabel, clp, &bval)); 2073a0541d8aSMatthew G. Knepley if ((val >= 0) && (val < dim-1) && (bval < 0)) { 20749566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(label, point, pos == PETSC_TRUE ? shift+dim-1 : -(shift+dim-1))); 2075cd0c2139SMatthew G Knepley break; 2076cd0c2139SMatthew G Knepley } 2077cd0c2139SMatthew G Knepley } 20789566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dm, point, PETSC_TRUE, &closureSize, &closure)); 2079cd0c2139SMatthew G Knepley } 2080cd0c2139SMatthew G Knepley } 2081cd0c2139SMatthew G Knepley } 2082cd0c2139SMatthew G Knepley } 2083accc9626SMatthew G. Knepley PetscCall(ISRestoreIndices(dimIS, &points)); 2084accc9626SMatthew G. Knepley PetscCall(ISDestroy(&dimIS)); 2085a0541d8aSMatthew G. Knepley /* Mark boundary points as unsplit */ 208686200784SMatthew G. Knepley if (blabel) { 2087accc9626SMatthew G. Knepley IS bdIS; 2088accc9626SMatthew G. Knepley 2089accc9626SMatthew G. Knepley PetscCall(DMLabelGetStratumIS(blabel, 1, &bdIS)); 2090accc9626SMatthew G. Knepley PetscCall(ISGetLocalSize(bdIS, &numPoints)); 2091accc9626SMatthew G. Knepley PetscCall(ISGetIndices(bdIS, &points)); 2092a0541d8aSMatthew G. Knepley for (p = 0; p < numPoints; ++p) { 2093a0541d8aSMatthew G. Knepley const PetscInt point = points[p]; 2094a0541d8aSMatthew G. Knepley PetscInt val, bval; 2095a0541d8aSMatthew G. Knepley 20969566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(blabel, point, &bval)); 2097a0541d8aSMatthew G. Knepley if (bval >= 0) { 20989566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, point, &val)); 2099f7019248SMatthew G. Knepley if ((val < 0) || (val > dim)) { 2100f7019248SMatthew G. Knepley /* This could be a point added from splitting a vertex on an adjacent fault, otherwise its just wrong */ 21019566063dSJacob Faibussowitsch PetscCall(DMLabelClearValue(blabel, point, bval)); 2102f7019248SMatthew G. Knepley } 2103f7019248SMatthew G. Knepley } 2104f7019248SMatthew G. Knepley } 2105f7019248SMatthew G. Knepley for (p = 0; p < numPoints; ++p) { 2106f7019248SMatthew G. Knepley const PetscInt point = points[p]; 2107f7019248SMatthew G. Knepley PetscInt val, bval; 2108f7019248SMatthew G. Knepley 21099566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(blabel, point, &bval)); 2110f7019248SMatthew G. Knepley if (bval >= 0) { 211186200784SMatthew G. Knepley const PetscInt *cone, *support; 211286200784SMatthew G. Knepley PetscInt coneSize, supportSize, s, valA, valB, valE; 211386200784SMatthew G. Knepley 2114a0541d8aSMatthew G. Knepley /* Mark as unsplit */ 21159566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, point, &val)); 2116*e1a13daeSMatthew G. Knepley PetscCheck(val >= 0 && val <= dim, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Point %" PetscInt_FMT " has label value %" PetscInt_FMT ", should be part of the fault", point, val); 21179566063dSJacob Faibussowitsch PetscCall(DMLabelClearValue(label, point, val)); 21189566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(label, point, shift2+val)); 21192c06a818SMatthew G. Knepley /* Check for cross-edge 21202c06a818SMatthew G. Knepley A cross-edge has endpoints which are both on the boundary of the surface, but the edge itself is not. */ 212186200784SMatthew G. Knepley if (val != 0) continue; 21229566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(dm, point, &support)); 21239566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dm, point, &supportSize)); 212486200784SMatthew G. Knepley for (s = 0; s < supportSize; ++s) { 21259566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, support[s], &cone)); 21269566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, support[s], &coneSize)); 212763a3b9bcSJacob Faibussowitsch PetscCheck(coneSize == 2, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Edge %" PetscInt_FMT " has %" PetscInt_FMT " vertices != 2", support[s], coneSize); 21289566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(blabel, cone[0], &valA)); 21299566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(blabel, cone[1], &valB)); 21309566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(blabel, support[s], &valE)); 21319566063dSJacob Faibussowitsch if ((valE < 0) && (valA >= 0) && (valB >= 0) && (cone[0] != cone[1])) PetscCall(DMLabelSetValue(blabel, support[s], 2)); 213286200784SMatthew G. Knepley } 2133a0541d8aSMatthew G. Knepley } 2134a0541d8aSMatthew G. Knepley } 2135accc9626SMatthew G. Knepley PetscCall(ISRestoreIndices(bdIS, &points)); 2136accc9626SMatthew G. Knepley PetscCall(ISDestroy(&bdIS)); 2137a0541d8aSMatthew G. Knepley } 2138b6dfa339SMatthew G. Knepley /* Mark ghost fault cells */ 2139b6dfa339SMatthew G. Knepley { 2140b6dfa339SMatthew G. Knepley PetscSF sf; 2141b6dfa339SMatthew G. Knepley const PetscInt *leaves; 2142b6dfa339SMatthew G. Knepley PetscInt Nl, l; 2143b6dfa339SMatthew G. Knepley 2144b6dfa339SMatthew G. Knepley PetscCall(DMGetPointSF(dm, &sf)); 2145b6dfa339SMatthew G. Knepley PetscCall(PetscSFGetGraph(sf, NULL, &Nl, &leaves, NULL)); 2146accc9626SMatthew G. Knepley PetscCall(DMLabelGetStratumIS(label, dim-1, &dimIS)); 2147accc9626SMatthew G. Knepley if (!dimIS) goto divide; 2148accc9626SMatthew G. Knepley PetscCall(ISGetLocalSize(dimIS, &numPoints)); 2149accc9626SMatthew G. Knepley PetscCall(ISGetIndices(dimIS, &points)); 2150b6dfa339SMatthew G. Knepley if (Nl > 0) { 2151b6dfa339SMatthew G. Knepley for (p = 0; p < numPoints; ++p) { 2152b6dfa339SMatthew G. Knepley const PetscInt point = points[p]; 2153b6dfa339SMatthew G. Knepley PetscInt val; 2154b6dfa339SMatthew G. Knepley 2155b6dfa339SMatthew G. Knepley PetscCall(PetscFindInt(point, Nl, leaves, &l)); 2156b6dfa339SMatthew G. Knepley if (l >= 0) { 2157b6dfa339SMatthew G. Knepley PetscInt *closure = NULL; 2158b6dfa339SMatthew G. Knepley PetscInt closureSize, cl; 2159b6dfa339SMatthew G. Knepley 2160b6dfa339SMatthew G. Knepley PetscCall(DMLabelGetValue(label, point, &val)); 2161b6dfa339SMatthew G. Knepley PetscCheck((val == dim-1) || (val == shift2+dim-1), PETSC_COMM_SELF, PETSC_ERR_PLIB, "Point %" PetscInt_FMT " has label value %" PetscInt_FMT ", should be a fault face", point, val); 2162b6dfa339SMatthew G. Knepley PetscCall(DMLabelClearValue(label, point, val)); 2163b6dfa339SMatthew G. Knepley PetscCall(DMLabelSetValue(label, point, shift3+val)); 2164b6dfa339SMatthew G. Knepley PetscCall(DMPlexGetTransitiveClosure(dm, point, PETSC_TRUE, &closureSize, &closure)); 2165accc9626SMatthew G. Knepley for (cl = 2; cl < closureSize*2; cl += 2) { 2166b6dfa339SMatthew G. Knepley const PetscInt clp = closure[cl]; 2167b6dfa339SMatthew G. Knepley 2168b6dfa339SMatthew G. Knepley PetscCall(DMLabelGetValue(label, clp, &val)); 2169b6dfa339SMatthew G. Knepley PetscCheck(val != -1, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Point %" PetscInt_FMT " is missing from label, but is in the closure of a fault face", point); 2170b6dfa339SMatthew G. Knepley PetscCall(DMLabelClearValue(label, clp, val)); 2171b6dfa339SMatthew G. Knepley PetscCall(DMLabelSetValue(label, clp, shift3+val)); 2172b6dfa339SMatthew G. Knepley } 2173b6dfa339SMatthew G. Knepley PetscCall(DMPlexRestoreTransitiveClosure(dm, point, PETSC_TRUE, &closureSize, &closure)); 2174b6dfa339SMatthew G. Knepley } 2175b6dfa339SMatthew G. Knepley } 2176b6dfa339SMatthew G. Knepley } 2177b6dfa339SMatthew G. Knepley PetscCall(ISRestoreIndices(dimIS, &points)); 2178b6dfa339SMatthew G. Knepley PetscCall(ISDestroy(&dimIS)); 2179accc9626SMatthew G. Knepley } 2180accc9626SMatthew G. Knepley divide: 2181b6dfa339SMatthew G. Knepley if (subpointIS) PetscCall(ISRestoreIndices(subpointIS, &subpoints)); 2182accc9626SMatthew G. Knepley PetscCall(DMPlexLabelFaultHalo(dm, label)); 2183accc9626SMatthew G. Knepley PetscCall(CheckFaultEdge_Private(dm, label)); 2184cd0c2139SMatthew G Knepley PetscFunctionReturn(0); 2185cd0c2139SMatthew G Knepley } 2186cd0c2139SMatthew G Knepley 2187720e594eSMatthew G. Knepley /* Check that no cell have all vertices on the fault */ 2188720e594eSMatthew G. Knepley PetscErrorCode DMPlexCheckValidSubmesh_Private(DM dm, DMLabel label, DM subdm) 2189720e594eSMatthew G. Knepley { 2190720e594eSMatthew G. Knepley IS subpointIS; 2191720e594eSMatthew G. Knepley const PetscInt *dmpoints; 2192720e594eSMatthew G. Knepley PetscInt defaultValue, cStart, cEnd, c, vStart, vEnd; 2193720e594eSMatthew G. Knepley 2194720e594eSMatthew G. Knepley PetscFunctionBegin; 2195720e594eSMatthew G. Knepley if (!label) PetscFunctionReturn(0); 21969566063dSJacob Faibussowitsch PetscCall(DMLabelGetDefaultValue(label, &defaultValue)); 21979566063dSJacob Faibussowitsch PetscCall(DMPlexGetSubpointIS(subdm, &subpointIS)); 2198720e594eSMatthew G. Knepley if (!subpointIS) PetscFunctionReturn(0); 21999566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(subdm, 0, &cStart, &cEnd)); 22009566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthStratum(dm, 0, &vStart, &vEnd)); 22019566063dSJacob Faibussowitsch PetscCall(ISGetIndices(subpointIS, &dmpoints)); 2202720e594eSMatthew G. Knepley for (c = cStart; c < cEnd; ++c) { 2203720e594eSMatthew G. Knepley PetscBool invalidCell = PETSC_TRUE; 2204720e594eSMatthew G. Knepley PetscInt *closure = NULL; 2205720e594eSMatthew G. Knepley PetscInt closureSize, cl; 2206720e594eSMatthew G. Knepley 22079566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(dm, dmpoints[c], PETSC_TRUE, &closureSize, &closure)); 2208720e594eSMatthew G. Knepley for (cl = 0; cl < closureSize*2; cl += 2) { 2209720e594eSMatthew G. Knepley PetscInt value = 0; 2210720e594eSMatthew G. Knepley 2211720e594eSMatthew G. Knepley if ((closure[cl] < vStart) || (closure[cl] >= vEnd)) continue; 22129566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, closure[cl], &value)); 2213720e594eSMatthew G. Knepley if (value == defaultValue) {invalidCell = PETSC_FALSE; break;} 2214720e594eSMatthew G. Knepley } 22159566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dm, dmpoints[c], PETSC_TRUE, &closureSize, &closure)); 2216720e594eSMatthew G. Knepley if (invalidCell) { 22179566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(subpointIS, &dmpoints)); 22189566063dSJacob Faibussowitsch PetscCall(ISDestroy(&subpointIS)); 22199566063dSJacob Faibussowitsch PetscCall(DMDestroy(&subdm)); 222063a3b9bcSJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Ambiguous submesh. Cell %" PetscInt_FMT " has all of its vertices on the submesh.", dmpoints[c]); 2221720e594eSMatthew G. Knepley } 2222720e594eSMatthew G. Knepley } 22239566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(subpointIS, &dmpoints)); 2224720e594eSMatthew G. Knepley PetscFunctionReturn(0); 2225720e594eSMatthew G. Knepley } 2226720e594eSMatthew G. Knepley 2227c08575a3SMatthew G. Knepley /*@ 22283cf72582SMatthew G. Knepley DMPlexCreateHybridMesh - Create a mesh with hybrid cells along an internal interface 22293cf72582SMatthew G. Knepley 22303cf72582SMatthew G. Knepley Collective on dm 22313cf72582SMatthew G. Knepley 22323cf72582SMatthew G. Knepley Input Parameters: 22333cf72582SMatthew G. Knepley + dm - The original DM 2234720e594eSMatthew G. Knepley . label - The label specifying the interface vertices 2235720e594eSMatthew G. Knepley - bdlabel - The optional label specifying the interface boundary vertices 22363cf72582SMatthew G. Knepley 22373cf72582SMatthew G. Knepley Output Parameters: 22387db7e0a7SMatthew G. Knepley + hybridLabel - The label fully marking the interface, or NULL if no output is desired 22397db7e0a7SMatthew G. Knepley . splitLabel - The label containing the split points, or NULL if no output is desired 2240720e594eSMatthew G. Knepley . dmInterface - The new interface DM, or NULL 2241720e594eSMatthew G. Knepley - dmHybrid - The new DM with cohesive cells 22423cf72582SMatthew G. Knepley 22436eccb800SMatthew Knepley Note: The hybridLabel indicates what parts of the original mesh impinged on the on division surface. For points 22446eccb800SMatthew Knepley directly on the division surface, they are labeled with their dimension, so an edge 7 on the division surface would be 22456eccb800SMatthew Knepley 7 (1) in hybridLabel. For points that impinge from the positive side, they are labeled with 100+dim, so an edge 6 with 22466eccb800SMatthew Knepley one vertex 3 on the surface would be 6 (101) and 3 (0) in hybridLabel. If an edge 9 from the negative side of the 22476eccb800SMatthew Knepley surface also hits vertex 3, it would be 9 (-101) in hybridLabel. 22486eccb800SMatthew Knepley 22496eccb800SMatthew Knepley The splitLabel indicates what points in the new hybrid mesh were the result of splitting points in the original 22506eccb800SMatthew Knepley mesh. The label value is +=100+dim for each point. For example, if two edges 10 and 14 in the hybrid resulting from 22516eccb800SMatthew Knepley splitting an edge in the original mesh, you would have 10 (101) and 14 (-101) in the splitLabel. 22526eccb800SMatthew Knepley 22536eccb800SMatthew Knepley The dmInterface is a DM built from the original division surface. It has a label which can be retrieved using 22546eccb800SMatthew Knepley DMPlexGetSubpointMap() which maps each point back to the point in the surface of the original mesh. 22556eccb800SMatthew Knepley 22563cf72582SMatthew G. Knepley Level: developer 22573cf72582SMatthew G. Knepley 2258db781477SPatrick Sanan .seealso: `DMPlexConstructCohesiveCells()`, `DMPlexLabelCohesiveComplete()`, `DMPlexGetSubpointMap()`, `DMCreate()` 22593cf72582SMatthew G. Knepley @*/ 22607db7e0a7SMatthew G. Knepley PetscErrorCode DMPlexCreateHybridMesh(DM dm, DMLabel label, DMLabel bdlabel, DMLabel *hybridLabel, DMLabel *splitLabel, DM *dmInterface, DM *dmHybrid) 22613cf72582SMatthew G. Knepley { 22623cf72582SMatthew G. Knepley DM idm; 22637db7e0a7SMatthew G. Knepley DMLabel subpointMap, hlabel, slabel = NULL; 22643cf72582SMatthew G. Knepley PetscInt dim; 22653cf72582SMatthew G. Knepley 22663cf72582SMatthew G. Knepley PetscFunctionBegin; 22673cf72582SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 2268720e594eSMatthew G. Knepley if (bdlabel) PetscValidPointer(bdlabel, 3); 2269720e594eSMatthew G. Knepley if (hybridLabel) PetscValidPointer(hybridLabel, 4); 22707db7e0a7SMatthew G. Knepley if (splitLabel) PetscValidPointer(splitLabel, 5); 22717db7e0a7SMatthew G. Knepley if (dmInterface) PetscValidPointer(dmInterface, 6); 22727db7e0a7SMatthew G. Knepley PetscValidPointer(dmHybrid, 7); 22739566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 22749566063dSJacob Faibussowitsch PetscCall(DMPlexCreateSubmesh(dm, label, 1, PETSC_FALSE, &idm)); 22759566063dSJacob Faibussowitsch PetscCall(DMPlexCheckValidSubmesh_Private(dm, label, idm)); 22769566063dSJacob Faibussowitsch PetscCall(DMPlexOrient(idm)); 22779566063dSJacob Faibussowitsch PetscCall(DMPlexGetSubpointMap(idm, &subpointMap)); 22789566063dSJacob Faibussowitsch PetscCall(DMLabelDuplicate(subpointMap, &hlabel)); 22799566063dSJacob Faibussowitsch PetscCall(DMLabelClearStratum(hlabel, dim)); 22807db7e0a7SMatthew G. Knepley if (splitLabel) { 22817db7e0a7SMatthew G. Knepley const char *name; 22827db7e0a7SMatthew G. Knepley char sname[PETSC_MAX_PATH_LEN]; 22837db7e0a7SMatthew G. Knepley 22849566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject) hlabel, &name)); 22859566063dSJacob Faibussowitsch PetscCall(PetscStrncpy(sname, name, PETSC_MAX_PATH_LEN)); 22869566063dSJacob Faibussowitsch PetscCall(PetscStrcat(sname, " split")); 22879566063dSJacob Faibussowitsch PetscCall(DMLabelCreate(PETSC_COMM_SELF, sname, &slabel)); 22887db7e0a7SMatthew G. Knepley } 22899566063dSJacob Faibussowitsch PetscCall(DMPlexLabelCohesiveComplete(dm, hlabel, bdlabel, PETSC_FALSE, idm)); 2290720e594eSMatthew G. Knepley if (dmInterface) {*dmInterface = idm;} 22919566063dSJacob Faibussowitsch else PetscCall(DMDestroy(&idm)); 22929566063dSJacob Faibussowitsch PetscCall(DMPlexConstructCohesiveCells(dm, hlabel, slabel, dmHybrid)); 22939566063dSJacob Faibussowitsch PetscCall(DMPlexCopy_Internal(dm, PETSC_TRUE, *dmHybrid)); 22943cf72582SMatthew G. Knepley if (hybridLabel) *hybridLabel = hlabel; 22959566063dSJacob Faibussowitsch else PetscCall(DMLabelDestroy(&hlabel)); 22967db7e0a7SMatthew G. Knepley if (splitLabel) *splitLabel = slabel; 22974a7ee7d0SMatthew G. Knepley { 22984a7ee7d0SMatthew G. Knepley DM cdm; 22994a7ee7d0SMatthew G. Knepley DMLabel ctLabel; 23004a7ee7d0SMatthew G. Knepley 23014a7ee7d0SMatthew G. Knepley /* We need to somehow share the celltype label with the coordinate dm */ 23029566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDM(*dmHybrid, &cdm)); 23039566063dSJacob Faibussowitsch PetscCall(DMPlexGetCellTypeLabel(*dmHybrid, &ctLabel)); 23049566063dSJacob Faibussowitsch PetscCall(DMSetLabel(cdm, ctLabel)); 23054a7ee7d0SMatthew G. Knepley } 2306cd0c2139SMatthew G Knepley PetscFunctionReturn(0); 2307cd0c2139SMatthew G Knepley } 2308cd0c2139SMatthew G Knepley 2309efa14ee0SMatthew G Knepley /* Here we need the explicit assumption that: 2310efa14ee0SMatthew G Knepley 2311efa14ee0SMatthew G Knepley For any marked cell, the marked vertices constitute a single face 2312efa14ee0SMatthew G Knepley */ 2313830e53efSMatthew G. Knepley static PetscErrorCode DMPlexMarkSubmesh_Uninterpolated(DM dm, DMLabel vertexLabel, PetscInt value, DMLabel subpointMap, PetscInt *numFaces, PetscInt *nFV, DM subdm) 2314efa14ee0SMatthew G Knepley { 2315fed694aaSMatthew G. Knepley IS subvertexIS = NULL; 2316efa14ee0SMatthew G Knepley const PetscInt *subvertices; 2317412e9a14SMatthew G. Knepley PetscInt *pStart, *pEnd, pSize; 2318efa14ee0SMatthew G Knepley PetscInt depth, dim, d, numSubVerticesInitial = 0, v; 2319efa14ee0SMatthew G Knepley 2320efa14ee0SMatthew G Knepley PetscFunctionBegin; 2321efa14ee0SMatthew G Knepley *numFaces = 0; 2322efa14ee0SMatthew G Knepley *nFV = 0; 23239566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepth(dm, &depth)); 23249566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 232577d178adSMatthew G. Knepley pSize = PetscMax(depth, dim) + 1; 23269566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(pSize, &pStart, pSize, &pEnd)); 2327efa14ee0SMatthew G Knepley for (d = 0; d <= depth; ++d) { 23289566063dSJacob Faibussowitsch PetscCall(DMPlexGetSimplexOrBoxCells(dm, depth-d, &pStart[d], &pEnd[d])); 2329efa14ee0SMatthew G Knepley } 2330efa14ee0SMatthew G Knepley /* Loop over initial vertices and mark all faces in the collective star() */ 23319566063dSJacob Faibussowitsch if (vertexLabel) PetscCall(DMLabelGetStratumIS(vertexLabel, value, &subvertexIS)); 2332efa14ee0SMatthew G Knepley if (subvertexIS) { 23339566063dSJacob Faibussowitsch PetscCall(ISGetSize(subvertexIS, &numSubVerticesInitial)); 23349566063dSJacob Faibussowitsch PetscCall(ISGetIndices(subvertexIS, &subvertices)); 2335efa14ee0SMatthew G Knepley } 2336efa14ee0SMatthew G Knepley for (v = 0; v < numSubVerticesInitial; ++v) { 2337efa14ee0SMatthew G Knepley const PetscInt vertex = subvertices[v]; 23380298fd71SBarry Smith PetscInt *star = NULL; 2339efa14ee0SMatthew G Knepley PetscInt starSize, s, numCells = 0, c; 2340efa14ee0SMatthew G Knepley 23419566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(dm, vertex, PETSC_FALSE, &starSize, &star)); 2342efa14ee0SMatthew G Knepley for (s = 0; s < starSize*2; s += 2) { 2343efa14ee0SMatthew G Knepley const PetscInt point = star[s]; 2344efa14ee0SMatthew G Knepley if ((point >= pStart[depth]) && (point < pEnd[depth])) star[numCells++] = point; 2345efa14ee0SMatthew G Knepley } 2346efa14ee0SMatthew G Knepley for (c = 0; c < numCells; ++c) { 2347efa14ee0SMatthew G Knepley const PetscInt cell = star[c]; 23480298fd71SBarry Smith PetscInt *closure = NULL; 2349efa14ee0SMatthew G Knepley PetscInt closureSize, cl; 2350efa14ee0SMatthew G Knepley PetscInt cellLoc, numCorners = 0, faceSize = 0; 2351efa14ee0SMatthew G Knepley 23529566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(subpointMap, cell, &cellLoc)); 235365560c7fSMatthew G Knepley if (cellLoc == 2) continue; 235463a3b9bcSJacob Faibussowitsch PetscCheck(cellLoc < 0,PetscObjectComm((PetscObject)dm), PETSC_ERR_PLIB, "Cell %" PetscInt_FMT " has dimension %" PetscInt_FMT " in the surface label", cell, cellLoc); 23559566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(dm, cell, PETSC_TRUE, &closureSize, &closure)); 2356efa14ee0SMatthew G Knepley for (cl = 0; cl < closureSize*2; cl += 2) { 2357efa14ee0SMatthew G Knepley const PetscInt point = closure[cl]; 2358efa14ee0SMatthew G Knepley PetscInt vertexLoc; 2359efa14ee0SMatthew G Knepley 2360efa14ee0SMatthew G Knepley if ((point >= pStart[0]) && (point < pEnd[0])) { 2361efa14ee0SMatthew G Knepley ++numCorners; 23629566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(vertexLabel, point, &vertexLoc)); 2363830e53efSMatthew G. Knepley if (vertexLoc == value) closure[faceSize++] = point; 2364efa14ee0SMatthew G Knepley } 2365efa14ee0SMatthew G Knepley } 23669566063dSJacob Faibussowitsch if (!(*nFV)) PetscCall(DMPlexGetNumFaceVertices(dm, dim, numCorners, nFV)); 236763a3b9bcSJacob Faibussowitsch PetscCheck(faceSize <= *nFV,PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Invalid submesh: Too many vertices %" PetscInt_FMT " of an element on the surface", faceSize); 2368efa14ee0SMatthew G Knepley if (faceSize == *nFV) { 2369007baee2SMatthew G. Knepley const PetscInt *cells = NULL; 2370007baee2SMatthew G. Knepley PetscInt numCells, nc; 2371007baee2SMatthew G. Knepley 2372efa14ee0SMatthew G Knepley ++(*numFaces); 2373efa14ee0SMatthew G Knepley for (cl = 0; cl < faceSize; ++cl) { 23749566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(subpointMap, closure[cl], 0)); 2375efa14ee0SMatthew G Knepley } 23769566063dSJacob Faibussowitsch PetscCall(DMPlexGetJoin(dm, faceSize, closure, &numCells, &cells)); 2377007baee2SMatthew G. Knepley for (nc = 0; nc < numCells; ++nc) { 23789566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(subpointMap, cells[nc], 2)); 2379007baee2SMatthew G. Knepley } 23809566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreJoin(dm, faceSize, closure, &numCells, &cells)); 2381efa14ee0SMatthew G Knepley } 23829566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dm, cell, PETSC_TRUE, &closureSize, &closure)); 2383efa14ee0SMatthew G Knepley } 23849566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dm, vertex, PETSC_FALSE, &starSize, &star)); 2385efa14ee0SMatthew G Knepley } 2386efa14ee0SMatthew G Knepley if (subvertexIS) { 23879566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(subvertexIS, &subvertices)); 2388efa14ee0SMatthew G Knepley } 23899566063dSJacob Faibussowitsch PetscCall(ISDestroy(&subvertexIS)); 23909566063dSJacob Faibussowitsch PetscCall(PetscFree2(pStart, pEnd)); 2391efa14ee0SMatthew G Knepley PetscFunctionReturn(0); 2392efa14ee0SMatthew G Knepley } 2393efa14ee0SMatthew G Knepley 2394158acfadSMatthew G. Knepley static PetscErrorCode DMPlexMarkSubmesh_Interpolated(DM dm, DMLabel vertexLabel, PetscInt value, PetscBool markedFaces, DMLabel subpointMap, DM subdm) 2395efa14ee0SMatthew G Knepley { 239634b4c39eSMatthew G. Knepley IS subvertexIS = NULL; 2397efa14ee0SMatthew G Knepley const PetscInt *subvertices; 2398412e9a14SMatthew G. Knepley PetscInt *pStart, *pEnd; 2399efa14ee0SMatthew G Knepley PetscInt dim, d, numSubVerticesInitial = 0, v; 2400efa14ee0SMatthew G Knepley 2401efa14ee0SMatthew G Knepley PetscFunctionBegin; 24029566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 24039566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(dim+1, &pStart, dim+1, &pEnd)); 2404efa14ee0SMatthew G Knepley for (d = 0; d <= dim; ++d) { 24059566063dSJacob Faibussowitsch PetscCall(DMPlexGetSimplexOrBoxCells(dm, dim-d, &pStart[d], &pEnd[d])); 2406efa14ee0SMatthew G Knepley } 2407efa14ee0SMatthew G Knepley /* Loop over initial vertices and mark all faces in the collective star() */ 240834b4c39eSMatthew G. Knepley if (vertexLabel) { 24099566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(vertexLabel, value, &subvertexIS)); 2410efa14ee0SMatthew G Knepley if (subvertexIS) { 24119566063dSJacob Faibussowitsch PetscCall(ISGetSize(subvertexIS, &numSubVerticesInitial)); 24129566063dSJacob Faibussowitsch PetscCall(ISGetIndices(subvertexIS, &subvertices)); 2413efa14ee0SMatthew G Knepley } 241434b4c39eSMatthew G. Knepley } 2415efa14ee0SMatthew G Knepley for (v = 0; v < numSubVerticesInitial; ++v) { 2416efa14ee0SMatthew G Knepley const PetscInt vertex = subvertices[v]; 24170298fd71SBarry Smith PetscInt *star = NULL; 2418efa14ee0SMatthew G Knepley PetscInt starSize, s, numFaces = 0, f; 2419efa14ee0SMatthew G Knepley 24209566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(dm, vertex, PETSC_FALSE, &starSize, &star)); 2421efa14ee0SMatthew G Knepley for (s = 0; s < starSize*2; s += 2) { 2422efa14ee0SMatthew G Knepley const PetscInt point = star[s]; 2423158acfadSMatthew G. Knepley PetscInt faceLoc; 2424158acfadSMatthew G. Knepley 2425158acfadSMatthew G. Knepley if ((point >= pStart[dim-1]) && (point < pEnd[dim-1])) { 2426158acfadSMatthew G. Knepley if (markedFaces) { 24279566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(vertexLabel, point, &faceLoc)); 2428158acfadSMatthew G. Knepley if (faceLoc < 0) continue; 2429158acfadSMatthew G. Knepley } 2430158acfadSMatthew G. Knepley star[numFaces++] = point; 2431158acfadSMatthew G. Knepley } 2432efa14ee0SMatthew G Knepley } 2433efa14ee0SMatthew G Knepley for (f = 0; f < numFaces; ++f) { 2434efa14ee0SMatthew G Knepley const PetscInt face = star[f]; 24350298fd71SBarry Smith PetscInt *closure = NULL; 2436efa14ee0SMatthew G Knepley PetscInt closureSize, c; 2437efa14ee0SMatthew G Knepley PetscInt faceLoc; 2438efa14ee0SMatthew G Knepley 24399566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(subpointMap, face, &faceLoc)); 2440efa14ee0SMatthew G Knepley if (faceLoc == dim-1) continue; 244163a3b9bcSJacob Faibussowitsch PetscCheck(faceLoc < 0,PetscObjectComm((PetscObject)dm), PETSC_ERR_PLIB, "Face %" PetscInt_FMT " has dimension %" PetscInt_FMT " in the surface label", face, faceLoc); 24429566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(dm, face, PETSC_TRUE, &closureSize, &closure)); 2443efa14ee0SMatthew G Knepley for (c = 0; c < closureSize*2; c += 2) { 2444efa14ee0SMatthew G Knepley const PetscInt point = closure[c]; 2445efa14ee0SMatthew G Knepley PetscInt vertexLoc; 2446efa14ee0SMatthew G Knepley 2447efa14ee0SMatthew G Knepley if ((point >= pStart[0]) && (point < pEnd[0])) { 24489566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(vertexLabel, point, &vertexLoc)); 2449830e53efSMatthew G. Knepley if (vertexLoc != value) break; 2450efa14ee0SMatthew G Knepley } 2451efa14ee0SMatthew G Knepley } 2452efa14ee0SMatthew G Knepley if (c == closureSize*2) { 2453efa14ee0SMatthew G Knepley const PetscInt *support; 2454efa14ee0SMatthew G Knepley PetscInt supportSize, s; 2455efa14ee0SMatthew G Knepley 2456efa14ee0SMatthew G Knepley for (c = 0; c < closureSize*2; c += 2) { 2457efa14ee0SMatthew G Knepley const PetscInt point = closure[c]; 2458efa14ee0SMatthew G Knepley 2459efa14ee0SMatthew G Knepley for (d = 0; d < dim; ++d) { 2460efa14ee0SMatthew G Knepley if ((point >= pStart[d]) && (point < pEnd[d])) { 24619566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(subpointMap, point, d)); 2462efa14ee0SMatthew G Knepley break; 2463efa14ee0SMatthew G Knepley } 2464efa14ee0SMatthew G Knepley } 2465efa14ee0SMatthew G Knepley } 24669566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dm, face, &supportSize)); 24679566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(dm, face, &support)); 2468efa14ee0SMatthew G Knepley for (s = 0; s < supportSize; ++s) { 24699566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(subpointMap, support[s], dim)); 2470efa14ee0SMatthew G Knepley } 2471efa14ee0SMatthew G Knepley } 24729566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dm, face, PETSC_TRUE, &closureSize, &closure)); 2473efa14ee0SMatthew G Knepley } 24749566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dm, vertex, PETSC_FALSE, &starSize, &star)); 2475efa14ee0SMatthew G Knepley } 24769566063dSJacob Faibussowitsch if (subvertexIS) PetscCall(ISRestoreIndices(subvertexIS, &subvertices)); 24779566063dSJacob Faibussowitsch PetscCall(ISDestroy(&subvertexIS)); 24789566063dSJacob Faibussowitsch PetscCall(PetscFree2(pStart, pEnd)); 2479efa14ee0SMatthew G Knepley PetscFunctionReturn(0); 2480efa14ee0SMatthew G Knepley } 2481efa14ee0SMatthew G Knepley 248227c04023SMatthew G. Knepley static PetscErrorCode DMPlexMarkCohesiveSubmesh_Uninterpolated(DM dm, PetscBool hasLagrange, const char labelname[], PetscInt value, DMLabel subpointMap, PetscInt *numFaces, PetscInt *nFV, PetscInt *subCells[], DM subdm) 2483766ab985SMatthew G. Knepley { 248427c04023SMatthew G. Knepley DMLabel label = NULL; 2485766ab985SMatthew G. Knepley const PetscInt *cone; 24869fc93327SToby Isaac PetscInt dim, cMax, cEnd, c, subc = 0, p, coneSize = -1; 2487766ab985SMatthew G. Knepley 2488812bfc34SJed Brown PetscFunctionBegin; 2489c0ed958bSJed Brown *numFaces = 0; 2490c0ed958bSJed Brown *nFV = 0; 24919566063dSJacob Faibussowitsch if (labelname) PetscCall(DMGetLabel(dm, labelname, &label)); 2492fed694aaSMatthew G. Knepley *subCells = NULL; 24939566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 24949566063dSJacob Faibussowitsch PetscCall(DMPlexGetTensorPrismBounds_Internal(dm, dim, &cMax, &cEnd)); 2495766ab985SMatthew G. Knepley if (cMax < 0) PetscFunctionReturn(0); 249627c04023SMatthew G. Knepley if (label) { 249727c04023SMatthew G. Knepley for (c = cMax; c < cEnd; ++c) { 249827c04023SMatthew G. Knepley PetscInt val; 249927c04023SMatthew G. Knepley 25009566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, c, &val)); 250127c04023SMatthew G. Knepley if (val == value) { 250227c04023SMatthew G. Knepley ++(*numFaces); 25039566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, c, &coneSize)); 250427c04023SMatthew G. Knepley } 250527c04023SMatthew G. Knepley } 250627c04023SMatthew G. Knepley } else { 2507766ab985SMatthew G. Knepley *numFaces = cEnd - cMax; 25089566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, cMax, &coneSize)); 250927c04023SMatthew G. Knepley } 25109566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(*numFaces *2, subCells)); 25119fc93327SToby Isaac if (!(*numFaces)) PetscFunctionReturn(0); 25129fc93327SToby Isaac *nFV = hasLagrange ? coneSize/3 : coneSize/2; 2513766ab985SMatthew G. Knepley for (c = cMax; c < cEnd; ++c) { 2514766ab985SMatthew G. Knepley const PetscInt *cells; 2515766ab985SMatthew G. Knepley PetscInt numCells; 2516766ab985SMatthew G. Knepley 251727c04023SMatthew G. Knepley if (label) { 251827c04023SMatthew G. Knepley PetscInt val; 251927c04023SMatthew G. Knepley 25209566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, c, &val)); 252127c04023SMatthew G. Knepley if (val != value) continue; 252227c04023SMatthew G. Knepley } 25239566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, c, &cone)); 2524766ab985SMatthew G. Knepley for (p = 0; p < *nFV; ++p) { 25259566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(subpointMap, cone[p], 0)); 2526766ab985SMatthew G. Knepley } 2527766ab985SMatthew G. Knepley /* Negative face */ 25289566063dSJacob Faibussowitsch PetscCall(DMPlexGetJoin(dm, *nFV, cone, &numCells, &cells)); 252927234c99SMatthew G. Knepley /* Not true in parallel 253008401ef6SPierre Jolivet PetscCheck(numCells == 2,PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Cohesive cells should separate two cells"); */ 2531766ab985SMatthew G. Knepley for (p = 0; p < numCells; ++p) { 25329566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(subpointMap, cells[p], 2)); 253327234c99SMatthew G. Knepley (*subCells)[subc++] = cells[p]; 2534766ab985SMatthew G. Knepley } 25359566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreJoin(dm, *nFV, cone, &numCells, &cells)); 2536766ab985SMatthew G. Knepley /* Positive face is not included */ 2537766ab985SMatthew G. Knepley } 2538766ab985SMatthew G. Knepley PetscFunctionReturn(0); 2539766ab985SMatthew G. Knepley } 2540766ab985SMatthew G. Knepley 25413982b651SMatthew G. Knepley static PetscErrorCode DMPlexMarkCohesiveSubmesh_Interpolated(DM dm, DMLabel label, PetscInt value, DMLabel subpointMap, DM subdm) 2542766ab985SMatthew G. Knepley { 2543766ab985SMatthew G. Knepley PetscInt *pStart, *pEnd; 2544766ab985SMatthew G. Knepley PetscInt dim, cMax, cEnd, c, d; 2545766ab985SMatthew G. Knepley 2546812bfc34SJed Brown PetscFunctionBegin; 25479566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 25489566063dSJacob Faibussowitsch PetscCall(DMPlexGetTensorPrismBounds_Internal(dm, dim, &cMax, &cEnd)); 2549766ab985SMatthew G. Knepley if (cMax < 0) PetscFunctionReturn(0); 25509566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(dim+1,&pStart,dim+1,&pEnd)); 25519566063dSJacob Faibussowitsch for (d = 0; d <= dim; ++d) PetscCall(DMPlexGetDepthStratum(dm, d, &pStart[d], &pEnd[d])); 2552766ab985SMatthew G. Knepley for (c = cMax; c < cEnd; ++c) { 2553766ab985SMatthew G. Knepley const PetscInt *cone; 2554766ab985SMatthew G. Knepley PetscInt *closure = NULL; 2555b3154360SMatthew G. Knepley PetscInt fconeSize, coneSize, closureSize, cl, val; 2556766ab985SMatthew G. Knepley 255727c04023SMatthew G. Knepley if (label) { 25589566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, c, &val)); 255927c04023SMatthew G. Knepley if (val != value) continue; 256027c04023SMatthew G. Knepley } 25619566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, c, &coneSize)); 25629566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, c, &cone)); 25639566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, cone[0], &fconeSize)); 25641dca8a05SBarry Smith PetscCheck(coneSize == (fconeSize ? fconeSize : 1) + 2,PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Cohesive cells should separate two cells"); 2565b3154360SMatthew G. Knepley /* Negative face */ 25669566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(dm, cone[0], PETSC_TRUE, &closureSize, &closure)); 2567766ab985SMatthew G. Knepley for (cl = 0; cl < closureSize*2; cl += 2) { 2568766ab985SMatthew G. Knepley const PetscInt point = closure[cl]; 2569766ab985SMatthew G. Knepley 2570766ab985SMatthew G. Knepley for (d = 0; d <= dim; ++d) { 2571766ab985SMatthew G. Knepley if ((point >= pStart[d]) && (point < pEnd[d])) { 25729566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(subpointMap, point, d)); 2573766ab985SMatthew G. Knepley break; 2574766ab985SMatthew G. Knepley } 2575766ab985SMatthew G. Knepley } 2576766ab985SMatthew G. Knepley } 25779566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dm, cone[0], PETSC_TRUE, &closureSize, &closure)); 2578766ab985SMatthew G. Knepley /* Cells -- positive face is not included */ 2579766ab985SMatthew G. Knepley for (cl = 0; cl < 1; ++cl) { 2580766ab985SMatthew G. Knepley const PetscInt *support; 2581766ab985SMatthew G. Knepley PetscInt supportSize, s; 2582766ab985SMatthew G. Knepley 25839566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dm, cone[cl], &supportSize)); 258408401ef6SPierre Jolivet /* PetscCheck(supportSize == 2,PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Cohesive faces should separate two cells"); */ 25859566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(dm, cone[cl], &support)); 2586766ab985SMatthew G. Knepley for (s = 0; s < supportSize; ++s) { 25879566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(subpointMap, support[s], dim)); 2588766ab985SMatthew G. Knepley } 2589766ab985SMatthew G. Knepley } 2590766ab985SMatthew G. Knepley } 25919566063dSJacob Faibussowitsch PetscCall(PetscFree2(pStart, pEnd)); 2592766ab985SMatthew G. Knepley PetscFunctionReturn(0); 2593766ab985SMatthew G. Knepley } 2594766ab985SMatthew G. Knepley 2595c08575a3SMatthew G. Knepley static PetscErrorCode DMPlexGetFaceOrientation(DM dm, PetscInt cell, PetscInt numCorners, PetscInt indices[], PetscInt oppositeVertex, PetscInt origVertices[], PetscInt faceVertices[], PetscBool *posOriented) 2596e6ccafaeSMatthew G Knepley { 259782f516ccSBarry Smith MPI_Comm comm; 2598e6ccafaeSMatthew G Knepley PetscBool posOrient = PETSC_FALSE; 2599e6ccafaeSMatthew G Knepley const PetscInt debug = 0; 2600e6ccafaeSMatthew G Knepley PetscInt cellDim, faceSize, f; 2601e6ccafaeSMatthew G Knepley 260282f516ccSBarry Smith PetscFunctionBegin; 26039566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)dm,&comm)); 26049566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &cellDim)); 260563a3b9bcSJacob Faibussowitsch if (debug) PetscCall(PetscPrintf(comm, "cellDim: %" PetscInt_FMT " numCorners: %" PetscInt_FMT "\n", cellDim, numCorners)); 2606e6ccafaeSMatthew G Knepley 2607ddeab2a6SMatthew G. Knepley if (cellDim == 1 && numCorners == 2) { 2608ddeab2a6SMatthew G. Knepley /* Triangle */ 2609e6ccafaeSMatthew G Knepley faceSize = numCorners-1; 2610e6ccafaeSMatthew G Knepley posOrient = !(oppositeVertex%2) ? PETSC_TRUE : PETSC_FALSE; 2611ddeab2a6SMatthew G. Knepley } else if (cellDim == 2 && numCorners == 3) { 2612ddeab2a6SMatthew G. Knepley /* Triangle */ 2613ddeab2a6SMatthew G. Knepley faceSize = numCorners-1; 2614ddeab2a6SMatthew G. Knepley posOrient = !(oppositeVertex%2) ? PETSC_TRUE : PETSC_FALSE; 2615ddeab2a6SMatthew G. Knepley } else if (cellDim == 3 && numCorners == 4) { 2616ddeab2a6SMatthew G. Knepley /* Tetrahedron */ 2617ddeab2a6SMatthew G. Knepley faceSize = numCorners-1; 2618ddeab2a6SMatthew G. Knepley posOrient = (oppositeVertex%2) ? PETSC_TRUE : PETSC_FALSE; 2619e6ccafaeSMatthew G Knepley } else if (cellDim == 1 && numCorners == 3) { 2620e6ccafaeSMatthew G Knepley /* Quadratic line */ 2621e6ccafaeSMatthew G Knepley faceSize = 1; 2622e6ccafaeSMatthew G Knepley posOrient = PETSC_TRUE; 2623e6ccafaeSMatthew G Knepley } else if (cellDim == 2 && numCorners == 4) { 2624e6ccafaeSMatthew G Knepley /* Quads */ 2625e6ccafaeSMatthew G Knepley faceSize = 2; 2626e6ccafaeSMatthew G Knepley if ((indices[1] > indices[0]) && (indices[1] - indices[0] == 1)) { 2627e6ccafaeSMatthew G Knepley posOrient = PETSC_TRUE; 2628e6ccafaeSMatthew G Knepley } else if ((indices[0] == 3) && (indices[1] == 0)) { 2629e6ccafaeSMatthew G Knepley posOrient = PETSC_TRUE; 2630e6ccafaeSMatthew G Knepley } else { 2631e6ccafaeSMatthew G Knepley if (((indices[0] > indices[1]) && (indices[0] - indices[1] == 1)) || ((indices[0] == 0) && (indices[1] == 3))) { 2632e6ccafaeSMatthew G Knepley posOrient = PETSC_FALSE; 2633e6ccafaeSMatthew G Knepley } else SETERRQ(comm, PETSC_ERR_ARG_WRONG, "Invalid quad crossedge"); 2634e6ccafaeSMatthew G Knepley } 2635e6ccafaeSMatthew G Knepley } else if (cellDim == 2 && numCorners == 6) { 2636e6ccafaeSMatthew G Knepley /* Quadratic triangle (I hate this) */ 2637e6ccafaeSMatthew G Knepley /* Edges are determined by the first 2 vertices (corners of edges) */ 2638e6ccafaeSMatthew G Knepley const PetscInt faceSizeTri = 3; 2639e6ccafaeSMatthew G Knepley PetscInt sortedIndices[3], i, iFace; 2640e6ccafaeSMatthew G Knepley PetscBool found = PETSC_FALSE; 2641e6ccafaeSMatthew G Knepley PetscInt faceVerticesTriSorted[9] = { 2642e6ccafaeSMatthew G Knepley 0, 3, 4, /* bottom */ 2643e6ccafaeSMatthew G Knepley 1, 4, 5, /* right */ 2644e6ccafaeSMatthew G Knepley 2, 3, 5, /* left */ 2645e6ccafaeSMatthew G Knepley }; 2646e6ccafaeSMatthew G Knepley PetscInt faceVerticesTri[9] = { 2647e6ccafaeSMatthew G Knepley 0, 3, 4, /* bottom */ 2648e6ccafaeSMatthew G Knepley 1, 4, 5, /* right */ 2649e6ccafaeSMatthew G Knepley 2, 5, 3, /* left */ 2650e6ccafaeSMatthew G Knepley }; 2651e6ccafaeSMatthew G Knepley 2652e6ccafaeSMatthew G Knepley for (i = 0; i < faceSizeTri; ++i) sortedIndices[i] = indices[i]; 26539566063dSJacob Faibussowitsch PetscCall(PetscSortInt(faceSizeTri, sortedIndices)); 2654e6ccafaeSMatthew G Knepley for (iFace = 0; iFace < 3; ++iFace) { 2655e6ccafaeSMatthew G Knepley const PetscInt ii = iFace*faceSizeTri; 2656e6ccafaeSMatthew G Knepley PetscInt fVertex, cVertex; 2657e6ccafaeSMatthew G Knepley 2658e6ccafaeSMatthew G Knepley if ((sortedIndices[0] == faceVerticesTriSorted[ii+0]) && 2659e6ccafaeSMatthew G Knepley (sortedIndices[1] == faceVerticesTriSorted[ii+1])) { 2660e6ccafaeSMatthew G Knepley for (fVertex = 0; fVertex < faceSizeTri; ++fVertex) { 2661e6ccafaeSMatthew G Knepley for (cVertex = 0; cVertex < faceSizeTri; ++cVertex) { 2662e6ccafaeSMatthew G Knepley if (indices[cVertex] == faceVerticesTri[ii+fVertex]) { 2663e6ccafaeSMatthew G Knepley faceVertices[fVertex] = origVertices[cVertex]; 2664e6ccafaeSMatthew G Knepley break; 2665e6ccafaeSMatthew G Knepley } 2666e6ccafaeSMatthew G Knepley } 2667e6ccafaeSMatthew G Knepley } 2668e6ccafaeSMatthew G Knepley found = PETSC_TRUE; 2669e6ccafaeSMatthew G Knepley break; 2670e6ccafaeSMatthew G Knepley } 2671e6ccafaeSMatthew G Knepley } 267228b400f6SJacob Faibussowitsch PetscCheck(found,comm, PETSC_ERR_ARG_WRONG, "Invalid tri crossface"); 2673e6ccafaeSMatthew G Knepley if (posOriented) *posOriented = PETSC_TRUE; 2674e6ccafaeSMatthew G Knepley PetscFunctionReturn(0); 2675e6ccafaeSMatthew G Knepley } else if (cellDim == 2 && numCorners == 9) { 2676e6ccafaeSMatthew G Knepley /* Quadratic quad (I hate this) */ 2677e6ccafaeSMatthew G Knepley /* Edges are determined by the first 2 vertices (corners of edges) */ 2678e6ccafaeSMatthew G Knepley const PetscInt faceSizeQuad = 3; 2679e6ccafaeSMatthew G Knepley PetscInt sortedIndices[3], i, iFace; 2680e6ccafaeSMatthew G Knepley PetscBool found = PETSC_FALSE; 2681e6ccafaeSMatthew G Knepley PetscInt faceVerticesQuadSorted[12] = { 2682e6ccafaeSMatthew G Knepley 0, 1, 4, /* bottom */ 2683e6ccafaeSMatthew G Knepley 1, 2, 5, /* right */ 2684e6ccafaeSMatthew G Knepley 2, 3, 6, /* top */ 2685e6ccafaeSMatthew G Knepley 0, 3, 7, /* left */ 2686e6ccafaeSMatthew G Knepley }; 2687e6ccafaeSMatthew G Knepley PetscInt faceVerticesQuad[12] = { 2688e6ccafaeSMatthew G Knepley 0, 1, 4, /* bottom */ 2689e6ccafaeSMatthew G Knepley 1, 2, 5, /* right */ 2690e6ccafaeSMatthew G Knepley 2, 3, 6, /* top */ 2691e6ccafaeSMatthew G Knepley 3, 0, 7, /* left */ 2692e6ccafaeSMatthew G Knepley }; 2693e6ccafaeSMatthew G Knepley 2694e6ccafaeSMatthew G Knepley for (i = 0; i < faceSizeQuad; ++i) sortedIndices[i] = indices[i]; 26959566063dSJacob Faibussowitsch PetscCall(PetscSortInt(faceSizeQuad, sortedIndices)); 2696e6ccafaeSMatthew G Knepley for (iFace = 0; iFace < 4; ++iFace) { 2697e6ccafaeSMatthew G Knepley const PetscInt ii = iFace*faceSizeQuad; 2698e6ccafaeSMatthew G Knepley PetscInt fVertex, cVertex; 2699e6ccafaeSMatthew G Knepley 2700e6ccafaeSMatthew G Knepley if ((sortedIndices[0] == faceVerticesQuadSorted[ii+0]) && 2701e6ccafaeSMatthew G Knepley (sortedIndices[1] == faceVerticesQuadSorted[ii+1])) { 2702e6ccafaeSMatthew G Knepley for (fVertex = 0; fVertex < faceSizeQuad; ++fVertex) { 2703e6ccafaeSMatthew G Knepley for (cVertex = 0; cVertex < faceSizeQuad; ++cVertex) { 2704e6ccafaeSMatthew G Knepley if (indices[cVertex] == faceVerticesQuad[ii+fVertex]) { 2705e6ccafaeSMatthew G Knepley faceVertices[fVertex] = origVertices[cVertex]; 2706e6ccafaeSMatthew G Knepley break; 2707e6ccafaeSMatthew G Knepley } 2708e6ccafaeSMatthew G Knepley } 2709e6ccafaeSMatthew G Knepley } 2710e6ccafaeSMatthew G Knepley found = PETSC_TRUE; 2711e6ccafaeSMatthew G Knepley break; 2712e6ccafaeSMatthew G Knepley } 2713e6ccafaeSMatthew G Knepley } 271428b400f6SJacob Faibussowitsch PetscCheck(found,comm, PETSC_ERR_ARG_WRONG, "Invalid quad crossface"); 2715e6ccafaeSMatthew G Knepley if (posOriented) *posOriented = PETSC_TRUE; 2716e6ccafaeSMatthew G Knepley PetscFunctionReturn(0); 2717e6ccafaeSMatthew G Knepley } else if (cellDim == 3 && numCorners == 8) { 2718e6ccafaeSMatthew G Knepley /* Hexes 2719e6ccafaeSMatthew G Knepley A hex is two oriented quads with the normal of the first 2720e6ccafaeSMatthew G Knepley pointing up at the second. 2721e6ccafaeSMatthew G Knepley 2722e6ccafaeSMatthew G Knepley 7---6 2723e6ccafaeSMatthew G Knepley /| /| 2724e6ccafaeSMatthew G Knepley 4---5 | 2725ddeab2a6SMatthew G. Knepley | 1-|-2 2726e6ccafaeSMatthew G Knepley |/ |/ 2727ddeab2a6SMatthew G. Knepley 0---3 2728e6ccafaeSMatthew G Knepley 2729e6ccafaeSMatthew G Knepley Faces are determined by the first 4 vertices (corners of faces) */ 2730e6ccafaeSMatthew G Knepley const PetscInt faceSizeHex = 4; 2731e6ccafaeSMatthew G Knepley PetscInt sortedIndices[4], i, iFace; 2732e6ccafaeSMatthew G Knepley PetscBool found = PETSC_FALSE; 2733e6ccafaeSMatthew G Knepley PetscInt faceVerticesHexSorted[24] = { 2734e6ccafaeSMatthew G Knepley 0, 1, 2, 3, /* bottom */ 2735e6ccafaeSMatthew G Knepley 4, 5, 6, 7, /* top */ 2736ddeab2a6SMatthew G. Knepley 0, 3, 4, 5, /* front */ 2737ddeab2a6SMatthew G. Knepley 2, 3, 5, 6, /* right */ 2738ddeab2a6SMatthew G. Knepley 1, 2, 6, 7, /* back */ 2739ddeab2a6SMatthew G. Knepley 0, 1, 4, 7, /* left */ 2740e6ccafaeSMatthew G Knepley }; 2741e6ccafaeSMatthew G Knepley PetscInt faceVerticesHex[24] = { 2742ddeab2a6SMatthew G. Knepley 1, 2, 3, 0, /* bottom */ 2743e6ccafaeSMatthew G Knepley 4, 5, 6, 7, /* top */ 2744ddeab2a6SMatthew G. Knepley 0, 3, 5, 4, /* front */ 2745ddeab2a6SMatthew G. Knepley 3, 2, 6, 5, /* right */ 2746ddeab2a6SMatthew G. Knepley 2, 1, 7, 6, /* back */ 2747ddeab2a6SMatthew G. Knepley 1, 0, 4, 7, /* left */ 2748e6ccafaeSMatthew G Knepley }; 2749e6ccafaeSMatthew G Knepley 2750e6ccafaeSMatthew G Knepley for (i = 0; i < faceSizeHex; ++i) sortedIndices[i] = indices[i]; 27519566063dSJacob Faibussowitsch PetscCall(PetscSortInt(faceSizeHex, sortedIndices)); 2752e6ccafaeSMatthew G Knepley for (iFace = 0; iFace < 6; ++iFace) { 2753e6ccafaeSMatthew G Knepley const PetscInt ii = iFace*faceSizeHex; 2754e6ccafaeSMatthew G Knepley PetscInt fVertex, cVertex; 2755e6ccafaeSMatthew G Knepley 2756e6ccafaeSMatthew G Knepley if ((sortedIndices[0] == faceVerticesHexSorted[ii+0]) && 2757e6ccafaeSMatthew G Knepley (sortedIndices[1] == faceVerticesHexSorted[ii+1]) && 2758e6ccafaeSMatthew G Knepley (sortedIndices[2] == faceVerticesHexSorted[ii+2]) && 2759e6ccafaeSMatthew G Knepley (sortedIndices[3] == faceVerticesHexSorted[ii+3])) { 2760e6ccafaeSMatthew G Knepley for (fVertex = 0; fVertex < faceSizeHex; ++fVertex) { 2761e6ccafaeSMatthew G Knepley for (cVertex = 0; cVertex < faceSizeHex; ++cVertex) { 2762e6ccafaeSMatthew G Knepley if (indices[cVertex] == faceVerticesHex[ii+fVertex]) { 2763e6ccafaeSMatthew G Knepley faceVertices[fVertex] = origVertices[cVertex]; 2764e6ccafaeSMatthew G Knepley break; 2765e6ccafaeSMatthew G Knepley } 2766e6ccafaeSMatthew G Knepley } 2767e6ccafaeSMatthew G Knepley } 2768e6ccafaeSMatthew G Knepley found = PETSC_TRUE; 2769e6ccafaeSMatthew G Knepley break; 2770e6ccafaeSMatthew G Knepley } 2771e6ccafaeSMatthew G Knepley } 277228b400f6SJacob Faibussowitsch PetscCheck(found,comm, PETSC_ERR_ARG_WRONG, "Invalid hex crossface"); 2773e6ccafaeSMatthew G Knepley if (posOriented) *posOriented = PETSC_TRUE; 2774e6ccafaeSMatthew G Knepley PetscFunctionReturn(0); 2775e6ccafaeSMatthew G Knepley } else if (cellDim == 3 && numCorners == 10) { 2776e6ccafaeSMatthew G Knepley /* Quadratic tet */ 2777e6ccafaeSMatthew G Knepley /* Faces are determined by the first 3 vertices (corners of faces) */ 2778e6ccafaeSMatthew G Knepley const PetscInt faceSizeTet = 6; 2779e6ccafaeSMatthew G Knepley PetscInt sortedIndices[6], i, iFace; 2780e6ccafaeSMatthew G Knepley PetscBool found = PETSC_FALSE; 2781e6ccafaeSMatthew G Knepley PetscInt faceVerticesTetSorted[24] = { 2782e6ccafaeSMatthew G Knepley 0, 1, 2, 6, 7, 8, /* bottom */ 2783e6ccafaeSMatthew G Knepley 0, 3, 4, 6, 7, 9, /* front */ 2784e6ccafaeSMatthew G Knepley 1, 4, 5, 7, 8, 9, /* right */ 2785e6ccafaeSMatthew G Knepley 2, 3, 5, 6, 8, 9, /* left */ 2786e6ccafaeSMatthew G Knepley }; 2787e6ccafaeSMatthew G Knepley PetscInt faceVerticesTet[24] = { 2788e6ccafaeSMatthew G Knepley 0, 1, 2, 6, 7, 8, /* bottom */ 2789e6ccafaeSMatthew G Knepley 0, 4, 3, 6, 7, 9, /* front */ 2790e6ccafaeSMatthew G Knepley 1, 5, 4, 7, 8, 9, /* right */ 2791e6ccafaeSMatthew G Knepley 2, 3, 5, 8, 6, 9, /* left */ 2792e6ccafaeSMatthew G Knepley }; 2793e6ccafaeSMatthew G Knepley 2794e6ccafaeSMatthew G Knepley for (i = 0; i < faceSizeTet; ++i) sortedIndices[i] = indices[i]; 27959566063dSJacob Faibussowitsch PetscCall(PetscSortInt(faceSizeTet, sortedIndices)); 2796e6ccafaeSMatthew G Knepley for (iFace=0; iFace < 4; ++iFace) { 2797e6ccafaeSMatthew G Knepley const PetscInt ii = iFace*faceSizeTet; 2798e6ccafaeSMatthew G Knepley PetscInt fVertex, cVertex; 2799e6ccafaeSMatthew G Knepley 2800e6ccafaeSMatthew G Knepley if ((sortedIndices[0] == faceVerticesTetSorted[ii+0]) && 2801e6ccafaeSMatthew G Knepley (sortedIndices[1] == faceVerticesTetSorted[ii+1]) && 2802e6ccafaeSMatthew G Knepley (sortedIndices[2] == faceVerticesTetSorted[ii+2]) && 2803e6ccafaeSMatthew G Knepley (sortedIndices[3] == faceVerticesTetSorted[ii+3])) { 2804e6ccafaeSMatthew G Knepley for (fVertex = 0; fVertex < faceSizeTet; ++fVertex) { 2805e6ccafaeSMatthew G Knepley for (cVertex = 0; cVertex < faceSizeTet; ++cVertex) { 2806e6ccafaeSMatthew G Knepley if (indices[cVertex] == faceVerticesTet[ii+fVertex]) { 2807e6ccafaeSMatthew G Knepley faceVertices[fVertex] = origVertices[cVertex]; 2808e6ccafaeSMatthew G Knepley break; 2809e6ccafaeSMatthew G Knepley } 2810e6ccafaeSMatthew G Knepley } 2811e6ccafaeSMatthew G Knepley } 2812e6ccafaeSMatthew G Knepley found = PETSC_TRUE; 2813e6ccafaeSMatthew G Knepley break; 2814e6ccafaeSMatthew G Knepley } 2815e6ccafaeSMatthew G Knepley } 281628b400f6SJacob Faibussowitsch PetscCheck(found,comm, PETSC_ERR_ARG_WRONG, "Invalid tet crossface"); 2817e6ccafaeSMatthew G Knepley if (posOriented) *posOriented = PETSC_TRUE; 2818e6ccafaeSMatthew G Knepley PetscFunctionReturn(0); 2819e6ccafaeSMatthew G Knepley } else if (cellDim == 3 && numCorners == 27) { 2820e6ccafaeSMatthew G Knepley /* Quadratic hexes (I hate this) 2821e6ccafaeSMatthew G Knepley A hex is two oriented quads with the normal of the first 2822e6ccafaeSMatthew G Knepley pointing up at the second. 2823e6ccafaeSMatthew G Knepley 2824e6ccafaeSMatthew G Knepley 7---6 2825e6ccafaeSMatthew G Knepley /| /| 2826e6ccafaeSMatthew G Knepley 4---5 | 2827e6ccafaeSMatthew G Knepley | 3-|-2 2828e6ccafaeSMatthew G Knepley |/ |/ 2829e6ccafaeSMatthew G Knepley 0---1 2830e6ccafaeSMatthew G Knepley 2831e6ccafaeSMatthew G Knepley Faces are determined by the first 4 vertices (corners of faces) */ 2832e6ccafaeSMatthew G Knepley const PetscInt faceSizeQuadHex = 9; 2833e6ccafaeSMatthew G Knepley PetscInt sortedIndices[9], i, iFace; 2834e6ccafaeSMatthew G Knepley PetscBool found = PETSC_FALSE; 2835e6ccafaeSMatthew G Knepley PetscInt faceVerticesQuadHexSorted[54] = { 2836e6ccafaeSMatthew G Knepley 0, 1, 2, 3, 8, 9, 10, 11, 24, /* bottom */ 2837e6ccafaeSMatthew G Knepley 4, 5, 6, 7, 12, 13, 14, 15, 25, /* top */ 2838e6ccafaeSMatthew G Knepley 0, 1, 4, 5, 8, 12, 16, 17, 22, /* front */ 2839e6ccafaeSMatthew G Knepley 1, 2, 5, 6, 9, 13, 17, 18, 21, /* right */ 2840e6ccafaeSMatthew G Knepley 2, 3, 6, 7, 10, 14, 18, 19, 23, /* back */ 2841e6ccafaeSMatthew G Knepley 0, 3, 4, 7, 11, 15, 16, 19, 20, /* left */ 2842e6ccafaeSMatthew G Knepley }; 2843e6ccafaeSMatthew G Knepley PetscInt faceVerticesQuadHex[54] = { 2844e6ccafaeSMatthew G Knepley 3, 2, 1, 0, 10, 9, 8, 11, 24, /* bottom */ 2845e6ccafaeSMatthew G Knepley 4, 5, 6, 7, 12, 13, 14, 15, 25, /* top */ 2846e6ccafaeSMatthew G Knepley 0, 1, 5, 4, 8, 17, 12, 16, 22, /* front */ 2847e6ccafaeSMatthew G Knepley 1, 2, 6, 5, 9, 18, 13, 17, 21, /* right */ 2848e6ccafaeSMatthew G Knepley 2, 3, 7, 6, 10, 19, 14, 18, 23, /* back */ 2849e6ccafaeSMatthew G Knepley 3, 0, 4, 7, 11, 16, 15, 19, 20 /* left */ 2850e6ccafaeSMatthew G Knepley }; 2851e6ccafaeSMatthew G Knepley 2852e6ccafaeSMatthew G Knepley for (i = 0; i < faceSizeQuadHex; ++i) sortedIndices[i] = indices[i]; 28539566063dSJacob Faibussowitsch PetscCall(PetscSortInt(faceSizeQuadHex, sortedIndices)); 2854e6ccafaeSMatthew G Knepley for (iFace = 0; iFace < 6; ++iFace) { 2855e6ccafaeSMatthew G Knepley const PetscInt ii = iFace*faceSizeQuadHex; 2856e6ccafaeSMatthew G Knepley PetscInt fVertex, cVertex; 2857e6ccafaeSMatthew G Knepley 2858e6ccafaeSMatthew G Knepley if ((sortedIndices[0] == faceVerticesQuadHexSorted[ii+0]) && 2859e6ccafaeSMatthew G Knepley (sortedIndices[1] == faceVerticesQuadHexSorted[ii+1]) && 2860e6ccafaeSMatthew G Knepley (sortedIndices[2] == faceVerticesQuadHexSorted[ii+2]) && 2861e6ccafaeSMatthew G Knepley (sortedIndices[3] == faceVerticesQuadHexSorted[ii+3])) { 2862e6ccafaeSMatthew G Knepley for (fVertex = 0; fVertex < faceSizeQuadHex; ++fVertex) { 2863e6ccafaeSMatthew G Knepley for (cVertex = 0; cVertex < faceSizeQuadHex; ++cVertex) { 2864e6ccafaeSMatthew G Knepley if (indices[cVertex] == faceVerticesQuadHex[ii+fVertex]) { 2865e6ccafaeSMatthew G Knepley faceVertices[fVertex] = origVertices[cVertex]; 2866e6ccafaeSMatthew G Knepley break; 2867e6ccafaeSMatthew G Knepley } 2868e6ccafaeSMatthew G Knepley } 2869e6ccafaeSMatthew G Knepley } 2870e6ccafaeSMatthew G Knepley found = PETSC_TRUE; 2871e6ccafaeSMatthew G Knepley break; 2872e6ccafaeSMatthew G Knepley } 2873e6ccafaeSMatthew G Knepley } 287428b400f6SJacob Faibussowitsch PetscCheck(found,comm, PETSC_ERR_ARG_WRONG, "Invalid hex crossface"); 2875e6ccafaeSMatthew G Knepley if (posOriented) *posOriented = PETSC_TRUE; 2876e6ccafaeSMatthew G Knepley PetscFunctionReturn(0); 2877e6ccafaeSMatthew G Knepley } else SETERRQ(comm, PETSC_ERR_ARG_WRONG, "Unknown cell type for faceOrientation()."); 2878e6ccafaeSMatthew G Knepley if (!posOrient) { 28799566063dSJacob Faibussowitsch if (debug) PetscCall(PetscPrintf(comm, " Reversing initial face orientation\n")); 2880e6ccafaeSMatthew G Knepley for (f = 0; f < faceSize; ++f) faceVertices[f] = origVertices[faceSize-1 - f]; 2881e6ccafaeSMatthew G Knepley } else { 28829566063dSJacob Faibussowitsch if (debug) PetscCall(PetscPrintf(comm, " Keeping initial face orientation\n")); 2883e6ccafaeSMatthew G Knepley for (f = 0; f < faceSize; ++f) faceVertices[f] = origVertices[f]; 2884e6ccafaeSMatthew G Knepley } 2885e6ccafaeSMatthew G Knepley if (posOriented) *posOriented = posOrient; 2886e6ccafaeSMatthew G Knepley PetscFunctionReturn(0); 2887e6ccafaeSMatthew G Knepley } 2888e6ccafaeSMatthew G Knepley 2889c08575a3SMatthew G. Knepley /*@ 2890c08575a3SMatthew G. Knepley DMPlexGetOrientedFace - Given a cell and a face, as a set of vertices, return the oriented face, as a set of vertices, 2891c08575a3SMatthew G. Knepley in faceVertices. The orientation is such that the face normal points out of the cell 2892c08575a3SMatthew G. Knepley 2893c08575a3SMatthew G. Knepley Not collective 2894c08575a3SMatthew G. Knepley 2895c08575a3SMatthew G. Knepley Input Parameters: 2896c08575a3SMatthew G. Knepley + dm - The original mesh 2897c08575a3SMatthew G. Knepley . cell - The cell mesh point 2898c08575a3SMatthew G. Knepley . faceSize - The number of vertices on the face 2899c08575a3SMatthew G. Knepley . face - The face vertices 2900c08575a3SMatthew G. Knepley . numCorners - The number of vertices on the cell 2901c08575a3SMatthew G. Knepley . indices - Local numbering of face vertices in cell cone 2902c08575a3SMatthew G. Knepley - origVertices - Original face vertices 2903c08575a3SMatthew G. Knepley 2904d8d19677SJose E. Roman Output Parameters: 2905c08575a3SMatthew G. Knepley + faceVertices - The face vertices properly oriented 2906c08575a3SMatthew G. Knepley - posOriented - PETSC_TRUE if the face was oriented with outward normal 2907c08575a3SMatthew G. Knepley 2908c08575a3SMatthew G. Knepley Level: developer 2909c08575a3SMatthew G. Knepley 2910db781477SPatrick Sanan .seealso: `DMPlexGetCone()` 2911c08575a3SMatthew G. Knepley @*/ 2912e6ccafaeSMatthew G Knepley PetscErrorCode DMPlexGetOrientedFace(DM dm, PetscInt cell, PetscInt faceSize, const PetscInt face[], PetscInt numCorners, PetscInt indices[], PetscInt origVertices[], PetscInt faceVertices[], PetscBool *posOriented) 2913e6ccafaeSMatthew G Knepley { 29140298fd71SBarry Smith const PetscInt *cone = NULL; 2915e6ccafaeSMatthew G Knepley PetscInt coneSize, v, f, v2; 2916e6ccafaeSMatthew G Knepley PetscInt oppositeVertex = -1; 2917e6ccafaeSMatthew G Knepley 2918e6ccafaeSMatthew G Knepley PetscFunctionBegin; 29199566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, cell, &coneSize)); 29209566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, cell, &cone)); 2921e6ccafaeSMatthew G Knepley for (v = 0, v2 = 0; v < coneSize; ++v) { 2922e6ccafaeSMatthew G Knepley PetscBool found = PETSC_FALSE; 2923e6ccafaeSMatthew G Knepley 2924e6ccafaeSMatthew G Knepley for (f = 0; f < faceSize; ++f) { 2925e6ccafaeSMatthew G Knepley if (face[f] == cone[v]) { 2926e6ccafaeSMatthew G Knepley found = PETSC_TRUE; break; 2927e6ccafaeSMatthew G Knepley } 2928e6ccafaeSMatthew G Knepley } 2929e6ccafaeSMatthew G Knepley if (found) { 2930e6ccafaeSMatthew G Knepley indices[v2] = v; 2931e6ccafaeSMatthew G Knepley origVertices[v2] = cone[v]; 2932e6ccafaeSMatthew G Knepley ++v2; 2933e6ccafaeSMatthew G Knepley } else { 2934e6ccafaeSMatthew G Knepley oppositeVertex = v; 2935e6ccafaeSMatthew G Knepley } 2936e6ccafaeSMatthew G Knepley } 29379566063dSJacob Faibussowitsch PetscCall(DMPlexGetFaceOrientation(dm, cell, numCorners, indices, oppositeVertex, origVertices, faceVertices, posOriented)); 2938e6ccafaeSMatthew G Knepley PetscFunctionReturn(0); 2939e6ccafaeSMatthew G Knepley } 2940e6ccafaeSMatthew G Knepley 2941e6ccafaeSMatthew G Knepley /* 2942cd0c2139SMatthew G Knepley DMPlexInsertFace_Internal - Puts a face into the mesh 2943e6ccafaeSMatthew G Knepley 2944e6ccafaeSMatthew G Knepley Not collective 2945e6ccafaeSMatthew G Knepley 2946e6ccafaeSMatthew G Knepley Input Parameters: 2947e6ccafaeSMatthew G Knepley + dm - The DMPlex 2948e6ccafaeSMatthew G Knepley . numFaceVertex - The number of vertices in the face 2949e6ccafaeSMatthew G Knepley . faceVertices - The vertices in the face for dm 2950e6ccafaeSMatthew G Knepley . subfaceVertices - The vertices in the face for subdm 2951e6ccafaeSMatthew G Knepley . numCorners - The number of vertices in the cell 2952e6ccafaeSMatthew G Knepley . cell - A cell in dm containing the face 2953e6ccafaeSMatthew G Knepley . subcell - A cell in subdm containing the face 2954e6ccafaeSMatthew G Knepley . firstFace - First face in the mesh 2955e6ccafaeSMatthew G Knepley - newFacePoint - Next face in the mesh 2956e6ccafaeSMatthew G Knepley 2957e6ccafaeSMatthew G Knepley Output Parameters: 2958e6ccafaeSMatthew G Knepley . newFacePoint - Contains next face point number on input, updated on output 2959e6ccafaeSMatthew G Knepley 2960e6ccafaeSMatthew G Knepley Level: developer 2961e6ccafaeSMatthew G Knepley */ 2962cd0c2139SMatthew G Knepley static PetscErrorCode DMPlexInsertFace_Internal(DM dm, DM subdm, PetscInt numFaceVertices, const PetscInt faceVertices[], const PetscInt subfaceVertices[], PetscInt numCorners, PetscInt cell, PetscInt subcell, PetscInt firstFace, PetscInt *newFacePoint) 2963e6ccafaeSMatthew G Knepley { 296482f516ccSBarry Smith MPI_Comm comm; 2965e6ccafaeSMatthew G Knepley DM_Plex *submesh = (DM_Plex*) subdm->data; 2966e6ccafaeSMatthew G Knepley const PetscInt *faces; 2967e6ccafaeSMatthew G Knepley PetscInt numFaces, coneSize; 2968e6ccafaeSMatthew G Knepley 2969e6ccafaeSMatthew G Knepley PetscFunctionBegin; 29709566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)dm,&comm)); 29719566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(subdm, subcell, &coneSize)); 297263a3b9bcSJacob Faibussowitsch PetscCheck(coneSize == 1,comm, PETSC_ERR_ARG_OUTOFRANGE, "Cone size of cell %" PetscInt_FMT " is %" PetscInt_FMT " != 1", cell, coneSize); 2973e6ccafaeSMatthew G Knepley #if 0 2974e6ccafaeSMatthew G Knepley /* Cannot use this because support() has not been constructed yet */ 29759566063dSJacob Faibussowitsch PetscCall(DMPlexGetJoin(subdm, numFaceVertices, subfaceVertices, &numFaces, &faces)); 2976e6ccafaeSMatthew G Knepley #else 2977e6ccafaeSMatthew G Knepley { 2978e6ccafaeSMatthew G Knepley PetscInt f; 2979e6ccafaeSMatthew G Knepley 2980e6ccafaeSMatthew G Knepley numFaces = 0; 29819566063dSJacob Faibussowitsch PetscCall(DMGetWorkArray(subdm, 1, MPIU_INT, (void **) &faces)); 2982e6ccafaeSMatthew G Knepley for (f = firstFace; f < *newFacePoint; ++f) { 2983e6ccafaeSMatthew G Knepley PetscInt dof, off, d; 2984e6ccafaeSMatthew G Knepley 29859566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(submesh->coneSection, f, &dof)); 29869566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(submesh->coneSection, f, &off)); 2987e6ccafaeSMatthew G Knepley /* Yes, I know this is quadratic, but I expect the sizes to be <5 */ 2988e6ccafaeSMatthew G Knepley for (d = 0; d < dof; ++d) { 2989e6ccafaeSMatthew G Knepley const PetscInt p = submesh->cones[off+d]; 2990e6ccafaeSMatthew G Knepley PetscInt v; 2991e6ccafaeSMatthew G Knepley 2992e6ccafaeSMatthew G Knepley for (v = 0; v < numFaceVertices; ++v) { 2993e6ccafaeSMatthew G Knepley if (subfaceVertices[v] == p) break; 2994e6ccafaeSMatthew G Knepley } 2995e6ccafaeSMatthew G Knepley if (v == numFaceVertices) break; 2996e6ccafaeSMatthew G Knepley } 2997e6ccafaeSMatthew G Knepley if (d == dof) { 2998e6ccafaeSMatthew G Knepley numFaces = 1; 2999e6ccafaeSMatthew G Knepley ((PetscInt*) faces)[0] = f; 3000e6ccafaeSMatthew G Knepley } 3001e6ccafaeSMatthew G Knepley } 3002e6ccafaeSMatthew G Knepley } 3003e6ccafaeSMatthew G Knepley #endif 300463a3b9bcSJacob Faibussowitsch PetscCheck(numFaces <= 1,comm, PETSC_ERR_ARG_WRONG, "Vertex set had %" PetscInt_FMT " faces, not one", numFaces); 3005e6ccafaeSMatthew G Knepley else if (numFaces == 1) { 3006e6ccafaeSMatthew G Knepley /* Add the other cell neighbor for this face */ 30079566063dSJacob Faibussowitsch PetscCall(DMPlexSetCone(subdm, subcell, faces)); 3008e6ccafaeSMatthew G Knepley } else { 3009e6ccafaeSMatthew G Knepley PetscInt *indices, *origVertices, *orientedVertices, *orientedSubVertices, v, ov; 3010e6ccafaeSMatthew G Knepley PetscBool posOriented; 3011e6ccafaeSMatthew G Knepley 30129566063dSJacob Faibussowitsch PetscCall(DMGetWorkArray(subdm, 4*numFaceVertices * sizeof(PetscInt), MPIU_INT, &orientedVertices)); 3013e6ccafaeSMatthew G Knepley origVertices = &orientedVertices[numFaceVertices]; 3014e6ccafaeSMatthew G Knepley indices = &orientedVertices[numFaceVertices*2]; 3015e6ccafaeSMatthew G Knepley orientedSubVertices = &orientedVertices[numFaceVertices*3]; 30169566063dSJacob Faibussowitsch PetscCall(DMPlexGetOrientedFace(dm, cell, numFaceVertices, faceVertices, numCorners, indices, origVertices, orientedVertices, &posOriented)); 3017e6ccafaeSMatthew G Knepley /* TODO: I know that routine should return a permutation, not the indices */ 3018e6ccafaeSMatthew G Knepley for (v = 0; v < numFaceVertices; ++v) { 3019e6ccafaeSMatthew G Knepley const PetscInt vertex = faceVertices[v], subvertex = subfaceVertices[v]; 3020e6ccafaeSMatthew G Knepley for (ov = 0; ov < numFaceVertices; ++ov) { 3021e6ccafaeSMatthew G Knepley if (orientedVertices[ov] == vertex) { 3022e6ccafaeSMatthew G Knepley orientedSubVertices[ov] = subvertex; 3023e6ccafaeSMatthew G Knepley break; 3024e6ccafaeSMatthew G Knepley } 3025e6ccafaeSMatthew G Knepley } 302663a3b9bcSJacob Faibussowitsch PetscCheck(ov != numFaceVertices,comm, PETSC_ERR_PLIB, "Could not find face vertex %" PetscInt_FMT " in orientated set", vertex); 3027e6ccafaeSMatthew G Knepley } 30289566063dSJacob Faibussowitsch PetscCall(DMPlexSetCone(subdm, *newFacePoint, orientedSubVertices)); 30299566063dSJacob Faibussowitsch PetscCall(DMPlexSetCone(subdm, subcell, newFacePoint)); 30309566063dSJacob Faibussowitsch PetscCall(DMRestoreWorkArray(subdm, 4*numFaceVertices * sizeof(PetscInt), MPIU_INT, &orientedVertices)); 3031e6ccafaeSMatthew G Knepley ++(*newFacePoint); 3032e6ccafaeSMatthew G Knepley } 3033ef07cca7SMatthew G. Knepley #if 0 30349566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreJoin(subdm, numFaceVertices, subfaceVertices, &numFaces, &faces)); 3035ef07cca7SMatthew G. Knepley #else 30369566063dSJacob Faibussowitsch PetscCall(DMRestoreWorkArray(subdm, 1, MPIU_INT, (void **) &faces)); 3037ef07cca7SMatthew G. Knepley #endif 3038e6ccafaeSMatthew G Knepley PetscFunctionReturn(0); 3039e6ccafaeSMatthew G Knepley } 3040e6ccafaeSMatthew G Knepley 304153156dfcSMatthew G. Knepley static PetscErrorCode DMPlexCreateSubmesh_Uninterpolated(DM dm, DMLabel vertexLabel, PetscInt value, DM subdm) 3042e6ccafaeSMatthew G Knepley { 304382f516ccSBarry Smith MPI_Comm comm; 304453156dfcSMatthew G. Knepley DMLabel subpointMap; 3045efa14ee0SMatthew G Knepley IS subvertexIS, subcellIS; 3046efa14ee0SMatthew G Knepley const PetscInt *subVertices, *subCells; 3047efa14ee0SMatthew G Knepley PetscInt numSubVertices, firstSubVertex, numSubCells; 3048fed694aaSMatthew G. Knepley PetscInt *subface, maxConeSize, numSubFaces = 0, firstSubFace, newFacePoint, nFV = 0; 3049efa14ee0SMatthew G Knepley PetscInt vStart, vEnd, c, f; 3050e6ccafaeSMatthew G Knepley 3051e6ccafaeSMatthew G Knepley PetscFunctionBegin; 30529566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)dm,&comm)); 3053efa14ee0SMatthew G Knepley /* Create subpointMap which marks the submesh */ 30549566063dSJacob Faibussowitsch PetscCall(DMLabelCreate(PETSC_COMM_SELF, "subpoint_map", &subpointMap)); 30559566063dSJacob Faibussowitsch PetscCall(DMPlexSetSubpointMap(subdm, subpointMap)); 30569566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&subpointMap)); 30579566063dSJacob Faibussowitsch if (vertexLabel) PetscCall(DMPlexMarkSubmesh_Uninterpolated(dm, vertexLabel, value, subpointMap, &numSubFaces, &nFV, subdm)); 3058efa14ee0SMatthew G Knepley /* Setup chart */ 30599566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumSize(subpointMap, 0, &numSubVertices)); 30609566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumSize(subpointMap, 2, &numSubCells)); 30619566063dSJacob Faibussowitsch PetscCall(DMPlexSetChart(subdm, 0, numSubCells+numSubFaces+numSubVertices)); 30629566063dSJacob Faibussowitsch PetscCall(DMPlexSetVTKCellHeight(subdm, 1)); 3063e6ccafaeSMatthew G Knepley /* Set cone sizes */ 3064e6ccafaeSMatthew G Knepley firstSubVertex = numSubCells; 3065efa14ee0SMatthew G Knepley firstSubFace = numSubCells+numSubVertices; 3066e6ccafaeSMatthew G Knepley newFacePoint = firstSubFace; 30679566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(subpointMap, 0, &subvertexIS)); 30689566063dSJacob Faibussowitsch if (subvertexIS) PetscCall(ISGetIndices(subvertexIS, &subVertices)); 30699566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(subpointMap, 2, &subcellIS)); 30709566063dSJacob Faibussowitsch if (subcellIS) PetscCall(ISGetIndices(subcellIS, &subCells)); 3071e6ccafaeSMatthew G Knepley for (c = 0; c < numSubCells; ++c) { 30729566063dSJacob Faibussowitsch PetscCall(DMPlexSetConeSize(subdm, c, 1)); 3073e6ccafaeSMatthew G Knepley } 3074e6ccafaeSMatthew G Knepley for (f = firstSubFace; f < firstSubFace+numSubFaces; ++f) { 30759566063dSJacob Faibussowitsch PetscCall(DMPlexSetConeSize(subdm, f, nFV)); 3076e6ccafaeSMatthew G Knepley } 30779566063dSJacob Faibussowitsch PetscCall(DMSetUp(subdm)); 3078e6ccafaeSMatthew G Knepley /* Create face cones */ 30799566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthStratum(dm, 0, &vStart, &vEnd)); 30809566063dSJacob Faibussowitsch PetscCall(DMPlexGetMaxSizes(dm, &maxConeSize, NULL)); 30819566063dSJacob Faibussowitsch PetscCall(DMGetWorkArray(subdm, maxConeSize, MPIU_INT, (void**) &subface)); 3082e6ccafaeSMatthew G Knepley for (c = 0; c < numSubCells; ++c) { 3083e6ccafaeSMatthew G Knepley const PetscInt cell = subCells[c]; 3084efa14ee0SMatthew G Knepley const PetscInt subcell = c; 30850298fd71SBarry Smith PetscInt *closure = NULL; 3086efa14ee0SMatthew G Knepley PetscInt closureSize, cl, numCorners = 0, faceSize = 0; 3087e6ccafaeSMatthew G Knepley 30889566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(dm, cell, PETSC_TRUE, &closureSize, &closure)); 3089efa14ee0SMatthew G Knepley for (cl = 0; cl < closureSize*2; cl += 2) { 3090efa14ee0SMatthew G Knepley const PetscInt point = closure[cl]; 3091e6ccafaeSMatthew G Knepley PetscInt subVertex; 3092e6ccafaeSMatthew G Knepley 3093efa14ee0SMatthew G Knepley if ((point >= vStart) && (point < vEnd)) { 3094efa14ee0SMatthew G Knepley ++numCorners; 30959566063dSJacob Faibussowitsch PetscCall(PetscFindInt(point, numSubVertices, subVertices, &subVertex)); 3096efa14ee0SMatthew G Knepley if (subVertex >= 0) { 3097efa14ee0SMatthew G Knepley closure[faceSize] = point; 309865560c7fSMatthew G Knepley subface[faceSize] = firstSubVertex+subVertex; 3099e6ccafaeSMatthew G Knepley ++faceSize; 3100e6ccafaeSMatthew G Knepley } 3101e6ccafaeSMatthew G Knepley } 3102e6ccafaeSMatthew G Knepley } 310363a3b9bcSJacob Faibussowitsch PetscCheck(faceSize <= nFV,comm, PETSC_ERR_ARG_WRONG, "Invalid submesh: Too many vertices %" PetscInt_FMT " of an element on the surface", faceSize); 3104efa14ee0SMatthew G Knepley if (faceSize == nFV) { 31059566063dSJacob Faibussowitsch PetscCall(DMPlexInsertFace_Internal(dm, subdm, faceSize, closure, subface, numCorners, cell, subcell, firstSubFace, &newFacePoint)); 3106e6ccafaeSMatthew G Knepley } 31079566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dm, cell, PETSC_TRUE, &closureSize, &closure)); 3108e6ccafaeSMatthew G Knepley } 31099566063dSJacob Faibussowitsch PetscCall(DMRestoreWorkArray(subdm, maxConeSize, MPIU_INT, (void**) &subface)); 31109566063dSJacob Faibussowitsch PetscCall(DMPlexSymmetrize(subdm)); 31119566063dSJacob Faibussowitsch PetscCall(DMPlexStratify(subdm)); 3112e6ccafaeSMatthew G Knepley /* Build coordinates */ 3113efa14ee0SMatthew G Knepley { 3114efa14ee0SMatthew G Knepley PetscSection coordSection, subCoordSection; 3115efa14ee0SMatthew G Knepley Vec coordinates, subCoordinates; 3116efa14ee0SMatthew G Knepley PetscScalar *coords, *subCoords; 3117285d324eSMatthew G. Knepley PetscInt numComp, coordSize, v; 311824640c55SToby Isaac const char *name; 3119efa14ee0SMatthew G Knepley 31209566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateSection(dm, &coordSection)); 31219566063dSJacob Faibussowitsch PetscCall(DMGetCoordinatesLocal(dm, &coordinates)); 31229566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateSection(subdm, &subCoordSection)); 31239566063dSJacob Faibussowitsch PetscCall(PetscSectionSetNumFields(subCoordSection, 1)); 31249566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldComponents(coordSection, 0, &numComp)); 31259566063dSJacob Faibussowitsch PetscCall(PetscSectionSetFieldComponents(subCoordSection, 0, numComp)); 31269566063dSJacob Faibussowitsch PetscCall(PetscSectionSetChart(subCoordSection, firstSubVertex, firstSubVertex+numSubVertices)); 3127efa14ee0SMatthew G Knepley for (v = 0; v < numSubVertices; ++v) { 3128efa14ee0SMatthew G Knepley const PetscInt vertex = subVertices[v]; 3129efa14ee0SMatthew G Knepley const PetscInt subvertex = firstSubVertex+v; 3130efa14ee0SMatthew G Knepley PetscInt dof; 3131efa14ee0SMatthew G Knepley 31329566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(coordSection, vertex, &dof)); 31339566063dSJacob Faibussowitsch PetscCall(PetscSectionSetDof(subCoordSection, subvertex, dof)); 31349566063dSJacob Faibussowitsch PetscCall(PetscSectionSetFieldDof(subCoordSection, subvertex, 0, dof)); 3135e6ccafaeSMatthew G Knepley } 31369566063dSJacob Faibussowitsch PetscCall(PetscSectionSetUp(subCoordSection)); 31379566063dSJacob Faibussowitsch PetscCall(PetscSectionGetStorageSize(subCoordSection, &coordSize)); 31389566063dSJacob Faibussowitsch PetscCall(VecCreate(PETSC_COMM_SELF, &subCoordinates)); 31399566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)coordinates,&name)); 31409566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)subCoordinates,name)); 31419566063dSJacob Faibussowitsch PetscCall(VecSetSizes(subCoordinates, coordSize, PETSC_DETERMINE)); 31429566063dSJacob Faibussowitsch PetscCall(VecSetType(subCoordinates,VECSTANDARD)); 3143830e53efSMatthew G. Knepley if (coordSize) { 31449566063dSJacob Faibussowitsch PetscCall(VecGetArray(coordinates, &coords)); 31459566063dSJacob Faibussowitsch PetscCall(VecGetArray(subCoordinates, &subCoords)); 3146efa14ee0SMatthew G Knepley for (v = 0; v < numSubVertices; ++v) { 3147efa14ee0SMatthew G Knepley const PetscInt vertex = subVertices[v]; 3148efa14ee0SMatthew G Knepley const PetscInt subvertex = firstSubVertex+v; 3149efa14ee0SMatthew G Knepley PetscInt dof, off, sdof, soff, d; 3150e6ccafaeSMatthew G Knepley 31519566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(coordSection, vertex, &dof)); 31529566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(coordSection, vertex, &off)); 31539566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(subCoordSection, subvertex, &sdof)); 31549566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(subCoordSection, subvertex, &soff)); 315563a3b9bcSJacob Faibussowitsch PetscCheck(dof == sdof,comm, PETSC_ERR_PLIB, "Coordinate dimension %" PetscInt_FMT " on subvertex %" PetscInt_FMT ", vertex %" PetscInt_FMT " should be %" PetscInt_FMT, sdof, subvertex, vertex, dof); 3156e6ccafaeSMatthew G Knepley for (d = 0; d < dof; ++d) subCoords[soff+d] = coords[off+d]; 3157e6ccafaeSMatthew G Knepley } 31589566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(coordinates, &coords)); 31599566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(subCoordinates, &subCoords)); 31603b399e24SMatthew G. Knepley } 31619566063dSJacob Faibussowitsch PetscCall(DMSetCoordinatesLocal(subdm, subCoordinates)); 31629566063dSJacob Faibussowitsch PetscCall(VecDestroy(&subCoordinates)); 3163e6ccafaeSMatthew G Knepley } 3164efa14ee0SMatthew G Knepley /* Cleanup */ 31659566063dSJacob Faibussowitsch if (subvertexIS) PetscCall(ISRestoreIndices(subvertexIS, &subVertices)); 31669566063dSJacob Faibussowitsch PetscCall(ISDestroy(&subvertexIS)); 31679566063dSJacob Faibussowitsch if (subcellIS) PetscCall(ISRestoreIndices(subcellIS, &subCells)); 31689566063dSJacob Faibussowitsch PetscCall(ISDestroy(&subcellIS)); 3169e6ccafaeSMatthew G Knepley PetscFunctionReturn(0); 3170e6ccafaeSMatthew G Knepley } 3171e6ccafaeSMatthew G Knepley 3172d0609cedSBarry Smith /* TODO: Fix this to properly propogate up error conditions it may find */ 31739fbee547SJacob Faibussowitsch static inline PetscInt DMPlexFilterPoint_Internal(PetscInt point, PetscInt firstSubPoint, PetscInt numSubPoints, const PetscInt subPoints[]) 31743982b651SMatthew G. Knepley { 31753982b651SMatthew G. Knepley PetscInt subPoint; 31763982b651SMatthew G. Knepley PetscErrorCode ierr; 31773982b651SMatthew G. Knepley 3178d0609cedSBarry Smith ierr = PetscFindInt(point, numSubPoints, subPoints, &subPoint); if (ierr) return -1; 31793982b651SMatthew G. Knepley return subPoint < 0 ? subPoint : firstSubPoint+subPoint; 31803982b651SMatthew G. Knepley } 31813982b651SMatthew G. Knepley 3182212103e5SMatthew Knepley static PetscErrorCode DMPlexFilterLabels_Internal(DM dm, const PetscInt numSubPoints[], const PetscInt *subpoints[], const PetscInt firstSubPoint[], DM subdm) 3183212103e5SMatthew Knepley { 3184212103e5SMatthew Knepley PetscInt Nl, l, d; 3185212103e5SMatthew Knepley 3186212103e5SMatthew Knepley PetscFunctionBegin; 31879566063dSJacob Faibussowitsch PetscCall(DMGetNumLabels(dm, &Nl)); 3188212103e5SMatthew Knepley for (l = 0; l < Nl; ++l) { 3189212103e5SMatthew Knepley DMLabel label, newlabel; 3190212103e5SMatthew Knepley const char *lname; 3191d56405f8SMatthew G. Knepley PetscBool isDepth, isDim, isCelltype, isVTK; 3192212103e5SMatthew Knepley IS valueIS; 3193212103e5SMatthew Knepley const PetscInt *values; 3194212103e5SMatthew Knepley PetscInt Nv, v; 3195212103e5SMatthew Knepley 31969566063dSJacob Faibussowitsch PetscCall(DMGetLabelName(dm, l, &lname)); 31979566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(lname, "depth", &isDepth)); 31989566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(lname, "dim", &isDim)); 31999566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(lname, "celltype", &isCelltype)); 32009566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(lname, "vtk", &isVTK)); 3201d56405f8SMatthew G. Knepley if (isDepth || isDim || isCelltype || isVTK) continue; 32029566063dSJacob Faibussowitsch PetscCall(DMCreateLabel(subdm, lname)); 32039566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, lname, &label)); 32049566063dSJacob Faibussowitsch PetscCall(DMGetLabel(subdm, lname, &newlabel)); 32059566063dSJacob Faibussowitsch PetscCall(DMLabelGetDefaultValue(label, &v)); 32069566063dSJacob Faibussowitsch PetscCall(DMLabelSetDefaultValue(newlabel, v)); 32079566063dSJacob Faibussowitsch PetscCall(DMLabelGetValueIS(label, &valueIS)); 32089566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(valueIS, &Nv)); 32099566063dSJacob Faibussowitsch PetscCall(ISGetIndices(valueIS, &values)); 3210212103e5SMatthew Knepley for (v = 0; v < Nv; ++v) { 3211212103e5SMatthew Knepley IS pointIS; 3212212103e5SMatthew Knepley const PetscInt *points; 3213212103e5SMatthew Knepley PetscInt Np, p; 3214212103e5SMatthew Knepley 32159566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(label, values[v], &pointIS)); 32169566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(pointIS, &Np)); 32179566063dSJacob Faibussowitsch PetscCall(ISGetIndices(pointIS, &points)); 3218212103e5SMatthew Knepley for (p = 0; p < Np; ++p) { 3219212103e5SMatthew Knepley const PetscInt point = points[p]; 3220212103e5SMatthew Knepley PetscInt subp; 3221212103e5SMatthew Knepley 32229566063dSJacob Faibussowitsch PetscCall(DMPlexGetPointDepth(dm, point, &d)); 3223212103e5SMatthew Knepley subp = DMPlexFilterPoint_Internal(point, firstSubPoint[d], numSubPoints[d], subpoints[d]); 32249566063dSJacob Faibussowitsch if (subp >= 0) PetscCall(DMLabelSetValue(newlabel, subp, values[v])); 3225212103e5SMatthew Knepley } 32269566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(pointIS, &points)); 32279566063dSJacob Faibussowitsch PetscCall(ISDestroy(&pointIS)); 3228212103e5SMatthew Knepley } 32299566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(valueIS, &values)); 32309566063dSJacob Faibussowitsch PetscCall(ISDestroy(&valueIS)); 3231212103e5SMatthew Knepley } 3232212103e5SMatthew Knepley PetscFunctionReturn(0); 3233212103e5SMatthew Knepley } 3234212103e5SMatthew Knepley 3235158acfadSMatthew G. Knepley static PetscErrorCode DMPlexCreateSubmeshGeneric_Interpolated(DM dm, DMLabel label, PetscInt value, PetscBool markedFaces, PetscBool isCohesive, PetscInt cellHeight, DM subdm) 3236e6ccafaeSMatthew G Knepley { 323782f516ccSBarry Smith MPI_Comm comm; 323853156dfcSMatthew G. Knepley DMLabel subpointMap; 3239efa14ee0SMatthew G Knepley IS *subpointIS; 3240efa14ee0SMatthew G Knepley const PetscInt **subpoints; 32413982b651SMatthew G. Knepley PetscInt *numSubPoints, *firstSubPoint, *coneNew, *orntNew; 3242412e9a14SMatthew G. Knepley PetscInt totSubPoints = 0, maxConeSize, dim, p, d, v; 32430d366550SMatthew G. Knepley PetscMPIInt rank; 3244e6ccafaeSMatthew G Knepley 3245e6ccafaeSMatthew G Knepley PetscFunctionBegin; 32469566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)dm,&comm)); 32479566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 3248efa14ee0SMatthew G Knepley /* Create subpointMap which marks the submesh */ 32499566063dSJacob Faibussowitsch PetscCall(DMLabelCreate(PETSC_COMM_SELF, "subpoint_map", &subpointMap)); 32509566063dSJacob Faibussowitsch PetscCall(DMPlexSetSubpointMap(subdm, subpointMap)); 3251bec263e5SMatthew G. Knepley if (cellHeight) { 32529566063dSJacob Faibussowitsch if (isCohesive) PetscCall(DMPlexMarkCohesiveSubmesh_Interpolated(dm, label, value, subpointMap, subdm)); 32539566063dSJacob Faibussowitsch else PetscCall(DMPlexMarkSubmesh_Interpolated(dm, label, value, markedFaces, subpointMap, subdm)); 3254bec263e5SMatthew G. Knepley } else { 3255bec263e5SMatthew G. Knepley DMLabel depth; 3256bec263e5SMatthew G. Knepley IS pointIS; 3257bec263e5SMatthew G. Knepley const PetscInt *points; 3258b85c8bf9SMatthew G. Knepley PetscInt numPoints=0; 3259bec263e5SMatthew G. Knepley 32609566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthLabel(dm, &depth)); 32619566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(label, value, &pointIS)); 3262b85c8bf9SMatthew G. Knepley if (pointIS) { 32639566063dSJacob Faibussowitsch PetscCall(ISGetIndices(pointIS, &points)); 32649566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(pointIS, &numPoints)); 3265b85c8bf9SMatthew G. Knepley } 3266bec263e5SMatthew G. Knepley for (p = 0; p < numPoints; ++p) { 3267bec263e5SMatthew G. Knepley PetscInt *closure = NULL; 3268bec263e5SMatthew G. Knepley PetscInt closureSize, c, pdim; 3269bec263e5SMatthew G. Knepley 32709566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(dm, points[p], PETSC_TRUE, &closureSize, &closure)); 3271bec263e5SMatthew G. Knepley for (c = 0; c < closureSize*2; c += 2) { 32729566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(depth, closure[c], &pdim)); 32739566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(subpointMap, closure[c], pdim)); 3274bec263e5SMatthew G. Knepley } 32759566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dm, points[p], PETSC_TRUE, &closureSize, &closure)); 3276bec263e5SMatthew G. Knepley } 32779566063dSJacob Faibussowitsch if (pointIS) PetscCall(ISRestoreIndices(pointIS, &points)); 32789566063dSJacob Faibussowitsch PetscCall(ISDestroy(&pointIS)); 3279bec263e5SMatthew G. Knepley } 3280efa14ee0SMatthew G Knepley /* Setup chart */ 32819566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 32829566063dSJacob Faibussowitsch PetscCall(PetscMalloc4(dim+1,&numSubPoints,dim+1,&firstSubPoint,dim+1,&subpointIS,dim+1,&subpoints)); 3283e6ccafaeSMatthew G Knepley for (d = 0; d <= dim; ++d) { 32849566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumSize(subpointMap, d, &numSubPoints[d])); 3285e6ccafaeSMatthew G Knepley totSubPoints += numSubPoints[d]; 3286e6ccafaeSMatthew G Knepley } 32879566063dSJacob Faibussowitsch PetscCall(DMPlexSetChart(subdm, 0, totSubPoints)); 32889566063dSJacob Faibussowitsch PetscCall(DMPlexSetVTKCellHeight(subdm, cellHeight)); 3289e6ccafaeSMatthew G Knepley /* Set cone sizes */ 3290e6ccafaeSMatthew G Knepley firstSubPoint[dim] = 0; 3291e6ccafaeSMatthew G Knepley firstSubPoint[0] = firstSubPoint[dim] + numSubPoints[dim]; 3292e6ccafaeSMatthew G Knepley if (dim > 1) {firstSubPoint[dim-1] = firstSubPoint[0] + numSubPoints[0];} 3293e6ccafaeSMatthew G Knepley if (dim > 2) {firstSubPoint[dim-2] = firstSubPoint[dim-1] + numSubPoints[dim-1];} 3294e6ccafaeSMatthew G Knepley for (d = 0; d <= dim; ++d) { 32959566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(subpointMap, d, &subpointIS[d])); 32969566063dSJacob Faibussowitsch if (subpointIS[d]) PetscCall(ISGetIndices(subpointIS[d], &subpoints[d])); 3297e6ccafaeSMatthew G Knepley } 3298412e9a14SMatthew G. Knepley /* We do not want this label automatically computed, instead we compute it here */ 32999566063dSJacob Faibussowitsch PetscCall(DMCreateLabel(subdm, "celltype")); 3300e6ccafaeSMatthew G Knepley for (d = 0; d <= dim; ++d) { 3301e6ccafaeSMatthew G Knepley for (p = 0; p < numSubPoints[d]; ++p) { 3302e6ccafaeSMatthew G Knepley const PetscInt point = subpoints[d][p]; 3303e6ccafaeSMatthew G Knepley const PetscInt subpoint = firstSubPoint[d] + p; 3304e6ccafaeSMatthew G Knepley const PetscInt *cone; 330515100a53SVaclav Hapla PetscInt coneSize; 3306e6ccafaeSMatthew G Knepley 33079566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, point, &coneSize)); 3308bec263e5SMatthew G. Knepley if (cellHeight && (d == dim)) { 330915100a53SVaclav Hapla PetscInt coneSizeNew, c, val; 331015100a53SVaclav Hapla 33119566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, point, &cone)); 3312e6ccafaeSMatthew G Knepley for (c = 0, coneSizeNew = 0; c < coneSize; ++c) { 33139566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(subpointMap, cone[c], &val)); 3314e6ccafaeSMatthew G Knepley if (val >= 0) coneSizeNew++; 3315e6ccafaeSMatthew G Knepley } 33169566063dSJacob Faibussowitsch PetscCall(DMPlexSetConeSize(subdm, subpoint, coneSizeNew)); 33179566063dSJacob Faibussowitsch PetscCall(DMPlexSetCellType(subdm, subpoint, DM_POLYTOPE_FV_GHOST)); 331815100a53SVaclav Hapla } else { 331915100a53SVaclav Hapla DMPolytopeType ct; 332015100a53SVaclav Hapla 332115100a53SVaclav Hapla PetscCall(DMPlexSetConeSize(subdm, subpoint, coneSize)); 332215100a53SVaclav Hapla PetscCall(DMPlexGetCellType(dm, point, &ct)); 332315100a53SVaclav Hapla PetscCall(DMPlexSetCellType(subdm, subpoint, ct)); 3324e6ccafaeSMatthew G Knepley } 3325e6ccafaeSMatthew G Knepley } 3326e6ccafaeSMatthew G Knepley } 33279566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&subpointMap)); 33289566063dSJacob Faibussowitsch PetscCall(DMSetUp(subdm)); 3329e6ccafaeSMatthew G Knepley /* Set cones */ 33309566063dSJacob Faibussowitsch PetscCall(DMPlexGetMaxSizes(dm, &maxConeSize, NULL)); 33319566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(maxConeSize,&coneNew,maxConeSize,&orntNew)); 3332e6ccafaeSMatthew G Knepley for (d = 0; d <= dim; ++d) { 3333e6ccafaeSMatthew G Knepley for (p = 0; p < numSubPoints[d]; ++p) { 3334e6ccafaeSMatthew G Knepley const PetscInt point = subpoints[d][p]; 3335e6ccafaeSMatthew G Knepley const PetscInt subpoint = firstSubPoint[d] + p; 33360e49e2e2SMatthew G. Knepley const PetscInt *cone, *ornt; 33370d366550SMatthew G. Knepley PetscInt coneSize, subconeSize, coneSizeNew, c, subc, fornt = 0; 3338e6ccafaeSMatthew G Knepley 33390d366550SMatthew G. Knepley if (d == dim-1) { 33400d366550SMatthew G. Knepley const PetscInt *support, *cone, *ornt; 33410d366550SMatthew G. Knepley PetscInt supportSize, coneSize, s, subc; 33420d366550SMatthew G. Knepley 33439566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(dm, point, &support)); 33449566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dm, point, &supportSize)); 33450d366550SMatthew G. Knepley for (s = 0; s < supportSize; ++s) { 3346412e9a14SMatthew G. Knepley PetscBool isHybrid; 3347412e9a14SMatthew G. Knepley 33489566063dSJacob Faibussowitsch PetscCall(DMPlexCellIsHybrid_Internal(dm, support[s], &isHybrid)); 3349412e9a14SMatthew G. Knepley if (!isHybrid) continue; 33509566063dSJacob Faibussowitsch PetscCall(PetscFindInt(support[s], numSubPoints[d+1], subpoints[d+1], &subc)); 33510d366550SMatthew G. Knepley if (subc >= 0) { 33520d366550SMatthew G. Knepley const PetscInt ccell = subpoints[d+1][subc]; 33530d366550SMatthew G. Knepley 33549566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, ccell, &cone)); 33559566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, ccell, &coneSize)); 33569566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeOrientation(dm, ccell, &ornt)); 33570d366550SMatthew G. Knepley for (c = 0; c < coneSize; ++c) { 33580d366550SMatthew G. Knepley if (cone[c] == point) { 33590d366550SMatthew G. Knepley fornt = ornt[c]; 33600d366550SMatthew G. Knepley break; 33610d366550SMatthew G. Knepley } 33620d366550SMatthew G. Knepley } 33630d366550SMatthew G. Knepley break; 33640d366550SMatthew G. Knepley } 33650d366550SMatthew G. Knepley } 33660d366550SMatthew G. Knepley } 33679566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, point, &coneSize)); 33689566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(subdm, subpoint, &subconeSize)); 33699566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, point, &cone)); 33709566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeOrientation(dm, point, &ornt)); 3371e6ccafaeSMatthew G Knepley for (c = 0, coneSizeNew = 0; c < coneSize; ++c) { 33729566063dSJacob Faibussowitsch PetscCall(PetscFindInt(cone[c], numSubPoints[d-1], subpoints[d-1], &subc)); 337301a2673eSMatthew G. Knepley if (subc >= 0) { 337401a2673eSMatthew G. Knepley coneNew[coneSizeNew] = firstSubPoint[d-1] + subc; 33753982b651SMatthew G. Knepley orntNew[coneSizeNew] = ornt[c]; 337601a2673eSMatthew G. Knepley ++coneSizeNew; 337701a2673eSMatthew G. Knepley } 3378e6ccafaeSMatthew G Knepley } 337963a3b9bcSJacob Faibussowitsch PetscCheck(coneSizeNew == subconeSize,comm, PETSC_ERR_PLIB, "Number of cone points located %" PetscInt_FMT " does not match subcone size %" PetscInt_FMT, coneSizeNew, subconeSize); 33809566063dSJacob Faibussowitsch PetscCall(DMPlexSetCone(subdm, subpoint, coneNew)); 33819566063dSJacob Faibussowitsch PetscCall(DMPlexSetConeOrientation(subdm, subpoint, orntNew)); 33829566063dSJacob Faibussowitsch if (fornt < 0) PetscCall(DMPlexOrientPoint(subdm, subpoint, fornt)); 3383e6ccafaeSMatthew G Knepley } 3384e6ccafaeSMatthew G Knepley } 33859566063dSJacob Faibussowitsch PetscCall(PetscFree2(coneNew,orntNew)); 33869566063dSJacob Faibussowitsch PetscCall(DMPlexSymmetrize(subdm)); 33879566063dSJacob Faibussowitsch PetscCall(DMPlexStratify(subdm)); 3388e6ccafaeSMatthew G Knepley /* Build coordinates */ 3389e6ccafaeSMatthew G Knepley { 3390e6ccafaeSMatthew G Knepley PetscSection coordSection, subCoordSection; 3391e6ccafaeSMatthew G Knepley Vec coordinates, subCoordinates; 3392e6ccafaeSMatthew G Knepley PetscScalar *coords, *subCoords; 3393c0e8cf5fSMatthew G. Knepley PetscInt cdim, numComp, coordSize; 339424640c55SToby Isaac const char *name; 3395e6ccafaeSMatthew G Knepley 33969566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDim(dm, &cdim)); 33979566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateSection(dm, &coordSection)); 33989566063dSJacob Faibussowitsch PetscCall(DMGetCoordinatesLocal(dm, &coordinates)); 33999566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateSection(subdm, &subCoordSection)); 34009566063dSJacob Faibussowitsch PetscCall(PetscSectionSetNumFields(subCoordSection, 1)); 34019566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldComponents(coordSection, 0, &numComp)); 34029566063dSJacob Faibussowitsch PetscCall(PetscSectionSetFieldComponents(subCoordSection, 0, numComp)); 34039566063dSJacob Faibussowitsch PetscCall(PetscSectionSetChart(subCoordSection, firstSubPoint[0], firstSubPoint[0]+numSubPoints[0])); 3404e6ccafaeSMatthew G Knepley for (v = 0; v < numSubPoints[0]; ++v) { 3405e6ccafaeSMatthew G Knepley const PetscInt vertex = subpoints[0][v]; 3406e6ccafaeSMatthew G Knepley const PetscInt subvertex = firstSubPoint[0]+v; 3407e6ccafaeSMatthew G Knepley PetscInt dof; 3408e6ccafaeSMatthew G Knepley 34099566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(coordSection, vertex, &dof)); 34109566063dSJacob Faibussowitsch PetscCall(PetscSectionSetDof(subCoordSection, subvertex, dof)); 34119566063dSJacob Faibussowitsch PetscCall(PetscSectionSetFieldDof(subCoordSection, subvertex, 0, dof)); 3412e6ccafaeSMatthew G Knepley } 34139566063dSJacob Faibussowitsch PetscCall(PetscSectionSetUp(subCoordSection)); 34149566063dSJacob Faibussowitsch PetscCall(PetscSectionGetStorageSize(subCoordSection, &coordSize)); 34159566063dSJacob Faibussowitsch PetscCall(VecCreate(PETSC_COMM_SELF, &subCoordinates)); 34169566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)coordinates,&name)); 34179566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)subCoordinates,name)); 34189566063dSJacob Faibussowitsch PetscCall(VecSetSizes(subCoordinates, coordSize, PETSC_DETERMINE)); 34199566063dSJacob Faibussowitsch PetscCall(VecSetBlockSize(subCoordinates, cdim)); 34209566063dSJacob Faibussowitsch PetscCall(VecSetType(subCoordinates,VECSTANDARD)); 34219566063dSJacob Faibussowitsch PetscCall(VecGetArray(coordinates, &coords)); 34229566063dSJacob Faibussowitsch PetscCall(VecGetArray(subCoordinates, &subCoords)); 3423e6ccafaeSMatthew G Knepley for (v = 0; v < numSubPoints[0]; ++v) { 3424e6ccafaeSMatthew G Knepley const PetscInt vertex = subpoints[0][v]; 3425e6ccafaeSMatthew G Knepley const PetscInt subvertex = firstSubPoint[0]+v; 3426e6ccafaeSMatthew G Knepley PetscInt dof, off, sdof, soff, d; 3427e6ccafaeSMatthew G Knepley 34289566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(coordSection, vertex, &dof)); 34299566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(coordSection, vertex, &off)); 34309566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(subCoordSection, subvertex, &sdof)); 34319566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(subCoordSection, subvertex, &soff)); 343263a3b9bcSJacob Faibussowitsch PetscCheck(dof == sdof,comm, PETSC_ERR_PLIB, "Coordinate dimension %" PetscInt_FMT " on subvertex %" PetscInt_FMT ", vertex %" PetscInt_FMT " should be %" PetscInt_FMT, sdof, subvertex, vertex, dof); 3433efa14ee0SMatthew G Knepley for (d = 0; d < dof; ++d) subCoords[soff+d] = coords[off+d]; 3434e6ccafaeSMatthew G Knepley } 34359566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(coordinates, &coords)); 34369566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(subCoordinates, &subCoords)); 34379566063dSJacob Faibussowitsch PetscCall(DMSetCoordinatesLocal(subdm, subCoordinates)); 34389566063dSJacob Faibussowitsch PetscCall(VecDestroy(&subCoordinates)); 3439e6ccafaeSMatthew G Knepley } 34403982b651SMatthew G. Knepley /* Build SF: We need this complexity because subpoints might not be selected on the owning process */ 34413982b651SMatthew G. Knepley { 34423982b651SMatthew G. Knepley PetscSF sfPoint, sfPointSub; 34433982b651SMatthew G. Knepley IS subpIS; 34443982b651SMatthew G. Knepley const PetscSFNode *remotePoints; 34453982b651SMatthew G. Knepley PetscSFNode *sremotePoints, *newLocalPoints, *newOwners; 34463982b651SMatthew G. Knepley const PetscInt *localPoints, *subpoints; 34473982b651SMatthew G. Knepley PetscInt *slocalPoints; 34483982b651SMatthew G. Knepley PetscInt numRoots, numLeaves, numSubpoints = 0, numSubroots, numSubleaves = 0, l, sl, ll, pStart, pEnd, p; 34493982b651SMatthew G. Knepley PetscMPIInt rank; 34503982b651SMatthew G. Knepley 34519566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject) dm), &rank)); 34529566063dSJacob Faibussowitsch PetscCall(DMGetPointSF(dm, &sfPoint)); 34539566063dSJacob Faibussowitsch PetscCall(DMGetPointSF(subdm, &sfPointSub)); 34549566063dSJacob Faibussowitsch PetscCall(DMPlexGetChart(dm, &pStart, &pEnd)); 34559566063dSJacob Faibussowitsch PetscCall(DMPlexGetChart(subdm, NULL, &numSubroots)); 34569566063dSJacob Faibussowitsch PetscCall(DMPlexGetSubpointIS(subdm, &subpIS)); 34573982b651SMatthew G. Knepley if (subpIS) { 34589566063dSJacob Faibussowitsch PetscCall(ISGetIndices(subpIS, &subpoints)); 34599566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(subpIS, &numSubpoints)); 34603982b651SMatthew G. Knepley } 34619566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(sfPoint, &numRoots, &numLeaves, &localPoints, &remotePoints)); 34623982b651SMatthew G. Knepley if (numRoots >= 0) { 34639566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(pEnd-pStart,&newLocalPoints,numRoots,&newOwners)); 34643982b651SMatthew G. Knepley for (p = 0; p < pEnd-pStart; ++p) { 34653982b651SMatthew G. Knepley newLocalPoints[p].rank = -2; 34663982b651SMatthew G. Knepley newLocalPoints[p].index = -2; 34673982b651SMatthew G. Knepley } 34683982b651SMatthew G. Knepley /* Set subleaves */ 34693982b651SMatthew G. Knepley for (l = 0; l < numLeaves; ++l) { 34703982b651SMatthew G. Knepley const PetscInt point = localPoints[l]; 34713982b651SMatthew G. Knepley const PetscInt subpoint = DMPlexFilterPoint_Internal(point, 0, numSubpoints, subpoints); 34723982b651SMatthew G. Knepley 34733982b651SMatthew G. Knepley if (subpoint < 0) continue; 34743982b651SMatthew G. Knepley newLocalPoints[point-pStart].rank = rank; 34753982b651SMatthew G. Knepley newLocalPoints[point-pStart].index = subpoint; 34763982b651SMatthew G. Knepley ++numSubleaves; 34773982b651SMatthew G. Knepley } 34783982b651SMatthew G. Knepley /* Must put in owned subpoints */ 34793982b651SMatthew G. Knepley for (p = pStart; p < pEnd; ++p) { 34803982b651SMatthew G. Knepley const PetscInt subpoint = DMPlexFilterPoint_Internal(p, 0, numSubpoints, subpoints); 34813982b651SMatthew G. Knepley 34823982b651SMatthew G. Knepley if (subpoint < 0) { 34833982b651SMatthew G. Knepley newOwners[p-pStart].rank = -3; 34843982b651SMatthew G. Knepley newOwners[p-pStart].index = -3; 34853982b651SMatthew G. Knepley } else { 34863982b651SMatthew G. Knepley newOwners[p-pStart].rank = rank; 34873982b651SMatthew G. Knepley newOwners[p-pStart].index = subpoint; 34883982b651SMatthew G. Knepley } 34893982b651SMatthew G. Knepley } 34909566063dSJacob Faibussowitsch PetscCall(PetscSFReduceBegin(sfPoint, MPIU_2INT, newLocalPoints, newOwners, MPI_MAXLOC)); 34919566063dSJacob Faibussowitsch PetscCall(PetscSFReduceEnd(sfPoint, MPIU_2INT, newLocalPoints, newOwners, MPI_MAXLOC)); 34929566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(sfPoint, MPIU_2INT, newOwners, newLocalPoints,MPI_REPLACE)); 34939566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(sfPoint, MPIU_2INT, newOwners, newLocalPoints,MPI_REPLACE)); 34949566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(numSubleaves, &slocalPoints)); 34959566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(numSubleaves, &sremotePoints)); 34963982b651SMatthew G. Knepley for (l = 0, sl = 0, ll = 0; l < numLeaves; ++l) { 34973982b651SMatthew G. Knepley const PetscInt point = localPoints[l]; 34983982b651SMatthew G. Knepley const PetscInt subpoint = DMPlexFilterPoint_Internal(point, 0, numSubpoints, subpoints); 34993982b651SMatthew G. Knepley 35003982b651SMatthew G. Knepley if (subpoint < 0) continue; 35013982b651SMatthew G. Knepley if (newLocalPoints[point].rank == rank) {++ll; continue;} 35023982b651SMatthew G. Knepley slocalPoints[sl] = subpoint; 35033982b651SMatthew G. Knepley sremotePoints[sl].rank = newLocalPoints[point].rank; 35043982b651SMatthew G. Knepley sremotePoints[sl].index = newLocalPoints[point].index; 350563a3b9bcSJacob Faibussowitsch PetscCheck(sremotePoints[sl].rank >= 0,PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid remote rank for local point %" PetscInt_FMT, point); 350663a3b9bcSJacob Faibussowitsch PetscCheck(sremotePoints[sl].index >= 0,PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid remote subpoint for local point %" PetscInt_FMT, point); 35073982b651SMatthew G. Knepley ++sl; 35083982b651SMatthew G. Knepley } 35091dca8a05SBarry Smith PetscCheck(sl + ll == numSubleaves,PETSC_COMM_SELF, PETSC_ERR_PLIB, "Mismatch in number of subleaves %" PetscInt_FMT " + %" PetscInt_FMT " != %" PetscInt_FMT, sl, ll, numSubleaves); 35109566063dSJacob Faibussowitsch PetscCall(PetscFree2(newLocalPoints,newOwners)); 35119566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(sfPointSub, numSubroots, sl, slocalPoints, PETSC_OWN_POINTER, sremotePoints, PETSC_OWN_POINTER)); 35123982b651SMatthew G. Knepley } 35133982b651SMatthew G. Knepley if (subpIS) { 35149566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(subpIS, &subpoints)); 35153982b651SMatthew G. Knepley } 35163982b651SMatthew G. Knepley } 3517212103e5SMatthew Knepley /* Filter labels */ 35189566063dSJacob Faibussowitsch PetscCall(DMPlexFilterLabels_Internal(dm, numSubPoints, subpoints, firstSubPoint, subdm)); 3519efa14ee0SMatthew G Knepley /* Cleanup */ 3520e6ccafaeSMatthew G Knepley for (d = 0; d <= dim; ++d) { 35219566063dSJacob Faibussowitsch if (subpointIS[d]) PetscCall(ISRestoreIndices(subpointIS[d], &subpoints[d])); 35229566063dSJacob Faibussowitsch PetscCall(ISDestroy(&subpointIS[d])); 3523e6ccafaeSMatthew G Knepley } 35249566063dSJacob Faibussowitsch PetscCall(PetscFree4(numSubPoints,firstSubPoint,subpointIS,subpoints)); 3525e6ccafaeSMatthew G Knepley PetscFunctionReturn(0); 3526e6ccafaeSMatthew G Knepley } 3527e6ccafaeSMatthew G Knepley 3528158acfadSMatthew G. Knepley static PetscErrorCode DMPlexCreateSubmesh_Interpolated(DM dm, DMLabel vertexLabel, PetscInt value, PetscBool markedFaces, DM subdm) 35293982b651SMatthew G. Knepley { 35303982b651SMatthew G. Knepley PetscFunctionBegin; 35319566063dSJacob Faibussowitsch PetscCall(DMPlexCreateSubmeshGeneric_Interpolated(dm, vertexLabel, value, markedFaces, PETSC_FALSE, 1, subdm)); 35323982b651SMatthew G. Knepley PetscFunctionReturn(0); 35333982b651SMatthew G. Knepley } 35343982b651SMatthew G. Knepley 3535d0fa310fSMatthew G. Knepley /*@ 3536e6ccafaeSMatthew G Knepley DMPlexCreateSubmesh - Extract a hypersurface from the mesh using vertices defined by a label 3537e6ccafaeSMatthew G Knepley 3538e6ccafaeSMatthew G Knepley Input Parameters: 3539e6ccafaeSMatthew G Knepley + dm - The original mesh 3540158acfadSMatthew G. Knepley . vertexLabel - The DMLabel marking points contained in the surface 3541158acfadSMatthew G. Knepley . value - The label value to use 3542158acfadSMatthew G. Knepley - markedFaces - PETSC_TRUE if surface faces are marked in addition to vertices, PETSC_FALSE if only vertices are marked 3543e6ccafaeSMatthew G Knepley 3544e6ccafaeSMatthew G Knepley Output Parameter: 3545e6ccafaeSMatthew G Knepley . subdm - The surface mesh 3546e6ccafaeSMatthew G Knepley 3547e6ccafaeSMatthew G Knepley Note: This function produces a DMLabel mapping original points in the submesh to their depth. This can be obtained using DMPlexGetSubpointMap(). 3548e6ccafaeSMatthew G Knepley 3549e6ccafaeSMatthew G Knepley Level: developer 3550e6ccafaeSMatthew G Knepley 3551db781477SPatrick Sanan .seealso: `DMPlexGetSubpointMap()`, `DMGetLabel()`, `DMLabelSetValue()` 3552830e53efSMatthew G. Knepley @*/ 3553158acfadSMatthew G. Knepley PetscErrorCode DMPlexCreateSubmesh(DM dm, DMLabel vertexLabel, PetscInt value, PetscBool markedFaces, DM *subdm) 3554e6ccafaeSMatthew G Knepley { 3555827c4036SVaclav Hapla DMPlexInterpolatedFlag interpolated; 3556827c4036SVaclav Hapla PetscInt dim, cdim; 3557e6ccafaeSMatthew G Knepley 3558e6ccafaeSMatthew G Knepley PetscFunctionBegin; 3559e6ccafaeSMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 3560064a246eSJacob Faibussowitsch PetscValidPointer(subdm, 5); 35619566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 35629566063dSJacob Faibussowitsch PetscCall(DMCreate(PetscObjectComm((PetscObject)dm), subdm)); 35639566063dSJacob Faibussowitsch PetscCall(DMSetType(*subdm, DMPLEX)); 35649566063dSJacob Faibussowitsch PetscCall(DMSetDimension(*subdm, dim-1)); 35659566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDim(dm, &cdim)); 35669566063dSJacob Faibussowitsch PetscCall(DMSetCoordinateDim(*subdm, cdim)); 35679566063dSJacob Faibussowitsch PetscCall(DMPlexIsInterpolated(dm, &interpolated)); 356808401ef6SPierre Jolivet PetscCheck(interpolated != DMPLEX_INTERPOLATED_PARTIAL,PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Not for partially interpolated meshes"); 3569827c4036SVaclav Hapla if (interpolated) { 35709566063dSJacob Faibussowitsch PetscCall(DMPlexCreateSubmesh_Interpolated(dm, vertexLabel, value, markedFaces, *subdm)); 3571e6ccafaeSMatthew G Knepley } else { 35729566063dSJacob Faibussowitsch PetscCall(DMPlexCreateSubmesh_Uninterpolated(dm, vertexLabel, value, *subdm)); 3573e6ccafaeSMatthew G Knepley } 35749566063dSJacob Faibussowitsch PetscCall(DMPlexCopy_Internal(dm, PETSC_TRUE, *subdm)); 3575e6ccafaeSMatthew G Knepley PetscFunctionReturn(0); 3576e6ccafaeSMatthew G Knepley } 3577e6ccafaeSMatthew G Knepley 357827c04023SMatthew G. Knepley static PetscErrorCode DMPlexCreateCohesiveSubmesh_Uninterpolated(DM dm, PetscBool hasLagrange, const char label[], PetscInt value, DM subdm) 3579766ab985SMatthew G. Knepley { 3580766ab985SMatthew G. Knepley MPI_Comm comm; 3581766ab985SMatthew G. Knepley DMLabel subpointMap; 3582766ab985SMatthew G. Knepley IS subvertexIS; 3583766ab985SMatthew G. Knepley const PetscInt *subVertices; 3584fed694aaSMatthew G. Knepley PetscInt numSubVertices, firstSubVertex, numSubCells, *subCells = NULL; 3585766ab985SMatthew G. Knepley PetscInt *subface, maxConeSize, numSubFaces, firstSubFace, newFacePoint, nFV; 3586412e9a14SMatthew G. Knepley PetscInt c, f; 3587766ab985SMatthew G. Knepley 3588766ab985SMatthew G. Knepley PetscFunctionBegin; 35899566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)dm, &comm)); 3590766ab985SMatthew G. Knepley /* Create subpointMap which marks the submesh */ 35919566063dSJacob Faibussowitsch PetscCall(DMLabelCreate(PETSC_COMM_SELF, "subpoint_map", &subpointMap)); 35929566063dSJacob Faibussowitsch PetscCall(DMPlexSetSubpointMap(subdm, subpointMap)); 35939566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&subpointMap)); 35949566063dSJacob Faibussowitsch PetscCall(DMPlexMarkCohesiveSubmesh_Uninterpolated(dm, hasLagrange, label, value, subpointMap, &numSubFaces, &nFV, &subCells, subdm)); 3595766ab985SMatthew G. Knepley /* Setup chart */ 35969566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumSize(subpointMap, 0, &numSubVertices)); 35979566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumSize(subpointMap, 2, &numSubCells)); 35989566063dSJacob Faibussowitsch PetscCall(DMPlexSetChart(subdm, 0, numSubCells+numSubFaces+numSubVertices)); 35999566063dSJacob Faibussowitsch PetscCall(DMPlexSetVTKCellHeight(subdm, 1)); 3600766ab985SMatthew G. Knepley /* Set cone sizes */ 3601766ab985SMatthew G. Knepley firstSubVertex = numSubCells; 3602766ab985SMatthew G. Knepley firstSubFace = numSubCells+numSubVertices; 3603766ab985SMatthew G. Knepley newFacePoint = firstSubFace; 36049566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(subpointMap, 0, &subvertexIS)); 36059566063dSJacob Faibussowitsch if (subvertexIS) PetscCall(ISGetIndices(subvertexIS, &subVertices)); 3606766ab985SMatthew G. Knepley for (c = 0; c < numSubCells; ++c) { 36079566063dSJacob Faibussowitsch PetscCall(DMPlexSetConeSize(subdm, c, 1)); 3608766ab985SMatthew G. Knepley } 3609766ab985SMatthew G. Knepley for (f = firstSubFace; f < firstSubFace+numSubFaces; ++f) { 36109566063dSJacob Faibussowitsch PetscCall(DMPlexSetConeSize(subdm, f, nFV)); 3611766ab985SMatthew G. Knepley } 36129566063dSJacob Faibussowitsch PetscCall(DMSetUp(subdm)); 3613766ab985SMatthew G. Knepley /* Create face cones */ 36149566063dSJacob Faibussowitsch PetscCall(DMPlexGetMaxSizes(dm, &maxConeSize, NULL)); 36159566063dSJacob Faibussowitsch PetscCall(DMGetWorkArray(subdm, maxConeSize, MPIU_INT, (void**) &subface)); 3616766ab985SMatthew G. Knepley for (c = 0; c < numSubCells; ++c) { 3617766ab985SMatthew G. Knepley const PetscInt cell = subCells[c]; 3618766ab985SMatthew G. Knepley const PetscInt subcell = c; 361987feddfdSMatthew G. Knepley const PetscInt *cone, *cells; 3620412e9a14SMatthew G. Knepley PetscBool isHybrid; 362187feddfdSMatthew G. Knepley PetscInt numCells, subVertex, p, v; 3622766ab985SMatthew G. Knepley 36239566063dSJacob Faibussowitsch PetscCall(DMPlexCellIsHybrid_Internal(dm, cell, &isHybrid)); 3624412e9a14SMatthew G. Knepley if (!isHybrid) continue; 36259566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, cell, &cone)); 362687feddfdSMatthew G. Knepley for (v = 0; v < nFV; ++v) { 36279566063dSJacob Faibussowitsch PetscCall(PetscFindInt(cone[v], numSubVertices, subVertices, &subVertex)); 362887feddfdSMatthew G. Knepley subface[v] = firstSubVertex+subVertex; 362987feddfdSMatthew G. Knepley } 36309566063dSJacob Faibussowitsch PetscCall(DMPlexSetCone(subdm, newFacePoint, subface)); 36319566063dSJacob Faibussowitsch PetscCall(DMPlexSetCone(subdm, subcell, &newFacePoint)); 36329566063dSJacob Faibussowitsch PetscCall(DMPlexGetJoin(dm, nFV, cone, &numCells, &cells)); 363327234c99SMatthew G. Knepley /* Not true in parallel 363408401ef6SPierre Jolivet PetscCheck(numCells == 2,PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Cohesive cells should separate two cells"); */ 363587feddfdSMatthew G. Knepley for (p = 0; p < numCells; ++p) { 363687feddfdSMatthew G. Knepley PetscInt negsubcell; 3637412e9a14SMatthew G. Knepley PetscBool isHybrid; 3638766ab985SMatthew G. Knepley 36399566063dSJacob Faibussowitsch PetscCall(DMPlexCellIsHybrid_Internal(dm, cells[p], &isHybrid)); 3640412e9a14SMatthew G. Knepley if (isHybrid) continue; 364187feddfdSMatthew G. Knepley /* I know this is a crap search */ 364287feddfdSMatthew G. Knepley for (negsubcell = 0; negsubcell < numSubCells; ++negsubcell) { 364387feddfdSMatthew G. Knepley if (subCells[negsubcell] == cells[p]) break; 3644766ab985SMatthew G. Knepley } 364563a3b9bcSJacob Faibussowitsch PetscCheck(negsubcell != numSubCells,PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Could not find negative face neighbor for cohesive cell %" PetscInt_FMT, cell); 36469566063dSJacob Faibussowitsch PetscCall(DMPlexSetCone(subdm, negsubcell, &newFacePoint)); 3647766ab985SMatthew G. Knepley } 36489566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreJoin(dm, nFV, cone, &numCells, &cells)); 364987feddfdSMatthew G. Knepley ++newFacePoint; 3650766ab985SMatthew G. Knepley } 36519566063dSJacob Faibussowitsch PetscCall(DMRestoreWorkArray(subdm, maxConeSize, MPIU_INT, (void**) &subface)); 36529566063dSJacob Faibussowitsch PetscCall(DMPlexSymmetrize(subdm)); 36539566063dSJacob Faibussowitsch PetscCall(DMPlexStratify(subdm)); 3654766ab985SMatthew G. Knepley /* Build coordinates */ 3655766ab985SMatthew G. Knepley { 3656766ab985SMatthew G. Knepley PetscSection coordSection, subCoordSection; 3657766ab985SMatthew G. Knepley Vec coordinates, subCoordinates; 3658766ab985SMatthew G. Knepley PetscScalar *coords, *subCoords; 3659c0e8cf5fSMatthew G. Knepley PetscInt cdim, numComp, coordSize, v; 366024640c55SToby Isaac const char *name; 3661766ab985SMatthew G. Knepley 36629566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDim(dm, &cdim)); 36639566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateSection(dm, &coordSection)); 36649566063dSJacob Faibussowitsch PetscCall(DMGetCoordinatesLocal(dm, &coordinates)); 36659566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateSection(subdm, &subCoordSection)); 36669566063dSJacob Faibussowitsch PetscCall(PetscSectionSetNumFields(subCoordSection, 1)); 36679566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldComponents(coordSection, 0, &numComp)); 36689566063dSJacob Faibussowitsch PetscCall(PetscSectionSetFieldComponents(subCoordSection, 0, numComp)); 36699566063dSJacob Faibussowitsch PetscCall(PetscSectionSetChart(subCoordSection, firstSubVertex, firstSubVertex+numSubVertices)); 3670766ab985SMatthew G. Knepley for (v = 0; v < numSubVertices; ++v) { 3671766ab985SMatthew G. Knepley const PetscInt vertex = subVertices[v]; 3672766ab985SMatthew G. Knepley const PetscInt subvertex = firstSubVertex+v; 3673766ab985SMatthew G. Knepley PetscInt dof; 3674766ab985SMatthew G. Knepley 36759566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(coordSection, vertex, &dof)); 36769566063dSJacob Faibussowitsch PetscCall(PetscSectionSetDof(subCoordSection, subvertex, dof)); 36779566063dSJacob Faibussowitsch PetscCall(PetscSectionSetFieldDof(subCoordSection, subvertex, 0, dof)); 3678766ab985SMatthew G. Knepley } 36799566063dSJacob Faibussowitsch PetscCall(PetscSectionSetUp(subCoordSection)); 36809566063dSJacob Faibussowitsch PetscCall(PetscSectionGetStorageSize(subCoordSection, &coordSize)); 36819566063dSJacob Faibussowitsch PetscCall(VecCreate(PETSC_COMM_SELF, &subCoordinates)); 36829566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)coordinates,&name)); 36839566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)subCoordinates,name)); 36849566063dSJacob Faibussowitsch PetscCall(VecSetSizes(subCoordinates, coordSize, PETSC_DETERMINE)); 36859566063dSJacob Faibussowitsch PetscCall(VecSetBlockSize(subCoordinates, cdim)); 36869566063dSJacob Faibussowitsch PetscCall(VecSetType(subCoordinates,VECSTANDARD)); 36879566063dSJacob Faibussowitsch PetscCall(VecGetArray(coordinates, &coords)); 36889566063dSJacob Faibussowitsch PetscCall(VecGetArray(subCoordinates, &subCoords)); 3689766ab985SMatthew G. Knepley for (v = 0; v < numSubVertices; ++v) { 3690766ab985SMatthew G. Knepley const PetscInt vertex = subVertices[v]; 3691766ab985SMatthew G. Knepley const PetscInt subvertex = firstSubVertex+v; 3692766ab985SMatthew G. Knepley PetscInt dof, off, sdof, soff, d; 3693766ab985SMatthew G. Knepley 36949566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(coordSection, vertex, &dof)); 36959566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(coordSection, vertex, &off)); 36969566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(subCoordSection, subvertex, &sdof)); 36979566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(subCoordSection, subvertex, &soff)); 369863a3b9bcSJacob Faibussowitsch PetscCheck(dof == sdof,comm, PETSC_ERR_PLIB, "Coordinate dimension %" PetscInt_FMT " on subvertex %" PetscInt_FMT ", vertex %" PetscInt_FMT " should be %" PetscInt_FMT, sdof, subvertex, vertex, dof); 3699766ab985SMatthew G. Knepley for (d = 0; d < dof; ++d) subCoords[soff+d] = coords[off+d]; 3700766ab985SMatthew G. Knepley } 37019566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(coordinates, &coords)); 37029566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(subCoordinates, &subCoords)); 37039566063dSJacob Faibussowitsch PetscCall(DMSetCoordinatesLocal(subdm, subCoordinates)); 37049566063dSJacob Faibussowitsch PetscCall(VecDestroy(&subCoordinates)); 3705766ab985SMatthew G. Knepley } 3706aca35d17SMatthew G. Knepley /* Build SF */ 3707aca35d17SMatthew G. Knepley CHKMEMQ; 3708aca35d17SMatthew G. Knepley { 3709aca35d17SMatthew G. Knepley PetscSF sfPoint, sfPointSub; 3710aca35d17SMatthew G. Knepley const PetscSFNode *remotePoints; 3711bdcf2095SMatthew G. Knepley PetscSFNode *sremotePoints, *newLocalPoints, *newOwners; 3712aca35d17SMatthew G. Knepley const PetscInt *localPoints; 3713bdcf2095SMatthew G. Knepley PetscInt *slocalPoints; 371449c26ae4SMatthew G. Knepley PetscInt numRoots, numLeaves, numSubRoots = numSubCells+numSubFaces+numSubVertices, numSubLeaves = 0, l, sl, ll, pStart, pEnd, p, vStart, vEnd; 3715bdcf2095SMatthew G. Knepley PetscMPIInt rank; 3716aca35d17SMatthew G. Knepley 37179566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject) dm), &rank)); 37189566063dSJacob Faibussowitsch PetscCall(DMGetPointSF(dm, &sfPoint)); 37199566063dSJacob Faibussowitsch PetscCall(DMGetPointSF(subdm, &sfPointSub)); 37209566063dSJacob Faibussowitsch PetscCall(DMPlexGetChart(dm, &pStart, &pEnd)); 37219566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthStratum(dm, 0, &vStart, &vEnd)); 37229566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(sfPoint, &numRoots, &numLeaves, &localPoints, &remotePoints)); 3723aca35d17SMatthew G. Knepley if (numRoots >= 0) { 3724aca35d17SMatthew G. Knepley /* Only vertices should be shared */ 37259566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(pEnd-pStart,&newLocalPoints,numRoots,&newOwners)); 3726bdcf2095SMatthew G. Knepley for (p = 0; p < pEnd-pStart; ++p) { 3727bdcf2095SMatthew G. Knepley newLocalPoints[p].rank = -2; 3728bdcf2095SMatthew G. Knepley newLocalPoints[p].index = -2; 3729bdcf2095SMatthew G. Knepley } 37309e0823b2SMatthew G. Knepley /* Set subleaves */ 3731aca35d17SMatthew G. Knepley for (l = 0; l < numLeaves; ++l) { 3732aca35d17SMatthew G. Knepley const PetscInt point = localPoints[l]; 3733bdcf2095SMatthew G. Knepley const PetscInt subPoint = DMPlexFilterPoint_Internal(point, firstSubVertex, numSubVertices, subVertices); 3734aca35d17SMatthew G. Knepley 373563a3b9bcSJacob Faibussowitsch PetscCheck(!(point < vStart) || !(point >= vEnd),PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Should not be mapping anything but vertices, %" PetscInt_FMT, point); 3736bdcf2095SMatthew G. Knepley if (subPoint < 0) continue; 3737bdcf2095SMatthew G. Knepley newLocalPoints[point-pStart].rank = rank; 3738bdcf2095SMatthew G. Knepley newLocalPoints[point-pStart].index = subPoint; 3739bdcf2095SMatthew G. Knepley ++numSubLeaves; 3740aca35d17SMatthew G. Knepley } 37419e0823b2SMatthew G. Knepley /* Must put in owned subpoints */ 37429e0823b2SMatthew G. Knepley for (p = pStart; p < pEnd; ++p) { 37439e0823b2SMatthew G. Knepley const PetscInt subPoint = DMPlexFilterPoint_Internal(p, firstSubVertex, numSubVertices, subVertices); 37449e0823b2SMatthew G. Knepley 37459e0823b2SMatthew G. Knepley if (subPoint < 0) { 37469e0823b2SMatthew G. Knepley newOwners[p-pStart].rank = -3; 37479e0823b2SMatthew G. Knepley newOwners[p-pStart].index = -3; 37489e0823b2SMatthew G. Knepley } else { 37499e0823b2SMatthew G. Knepley newOwners[p-pStart].rank = rank; 37509e0823b2SMatthew G. Knepley newOwners[p-pStart].index = subPoint; 37519e0823b2SMatthew G. Knepley } 3752bdcf2095SMatthew G. Knepley } 37539566063dSJacob Faibussowitsch PetscCall(PetscSFReduceBegin(sfPoint, MPIU_2INT, newLocalPoints, newOwners, MPI_MAXLOC)); 37549566063dSJacob Faibussowitsch PetscCall(PetscSFReduceEnd(sfPoint, MPIU_2INT, newLocalPoints, newOwners, MPI_MAXLOC)); 37559566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(sfPoint, MPIU_2INT, newOwners, newLocalPoints,MPI_REPLACE)); 37569566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(sfPoint, MPIU_2INT, newOwners, newLocalPoints,MPI_REPLACE)); 37579566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(numSubLeaves, &slocalPoints)); 37589566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(numSubLeaves, &sremotePoints)); 375949c26ae4SMatthew G. Knepley for (l = 0, sl = 0, ll = 0; l < numLeaves; ++l) { 3760bdcf2095SMatthew G. Knepley const PetscInt point = localPoints[l]; 3761bdcf2095SMatthew G. Knepley const PetscInt subPoint = DMPlexFilterPoint_Internal(point, firstSubVertex, numSubVertices, subVertices); 3762aca35d17SMatthew G. Knepley 3763aca35d17SMatthew G. Knepley if (subPoint < 0) continue; 376449c26ae4SMatthew G. Knepley if (newLocalPoints[point].rank == rank) {++ll; continue;} 3765aca35d17SMatthew G. Knepley slocalPoints[sl] = subPoint; 3766bdcf2095SMatthew G. Knepley sremotePoints[sl].rank = newLocalPoints[point].rank; 3767bdcf2095SMatthew G. Knepley sremotePoints[sl].index = newLocalPoints[point].index; 376863a3b9bcSJacob Faibussowitsch PetscCheck(sremotePoints[sl].rank >= 0,PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid remote rank for local point %" PetscInt_FMT, point); 376963a3b9bcSJacob Faibussowitsch PetscCheck(sremotePoints[sl].index >= 0,PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid remote subpoint for local point %" PetscInt_FMT, point); 3770aca35d17SMatthew G. Knepley ++sl; 3771aca35d17SMatthew G. Knepley } 37729566063dSJacob Faibussowitsch PetscCall(PetscFree2(newLocalPoints,newOwners)); 37731dca8a05SBarry Smith PetscCheck(sl + ll == numSubLeaves,PETSC_COMM_SELF, PETSC_ERR_PLIB, "Mismatch in number of subleaves %" PetscInt_FMT " + %" PetscInt_FMT " != %" PetscInt_FMT, sl, ll, numSubLeaves); 37749566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(sfPointSub, numSubRoots, sl, slocalPoints, PETSC_OWN_POINTER, sremotePoints, PETSC_OWN_POINTER)); 3775aca35d17SMatthew G. Knepley } 3776aca35d17SMatthew G. Knepley } 3777aca35d17SMatthew G. Knepley CHKMEMQ; 3778766ab985SMatthew G. Knepley /* Cleanup */ 37799566063dSJacob Faibussowitsch if (subvertexIS) PetscCall(ISRestoreIndices(subvertexIS, &subVertices)); 37809566063dSJacob Faibussowitsch PetscCall(ISDestroy(&subvertexIS)); 37819566063dSJacob Faibussowitsch PetscCall(PetscFree(subCells)); 3782766ab985SMatthew G. Knepley PetscFunctionReturn(0); 3783766ab985SMatthew G. Knepley } 3784766ab985SMatthew G. Knepley 37853982b651SMatthew G. Knepley static PetscErrorCode DMPlexCreateCohesiveSubmesh_Interpolated(DM dm, const char labelname[], PetscInt value, DM subdm) 3786766ab985SMatthew G. Knepley { 37873982b651SMatthew G. Knepley DMLabel label = NULL; 3788766ab985SMatthew G. Knepley 3789766ab985SMatthew G. Knepley PetscFunctionBegin; 37909566063dSJacob Faibussowitsch if (labelname) PetscCall(DMGetLabel(dm, labelname, &label)); 37919566063dSJacob Faibussowitsch PetscCall(DMPlexCreateSubmeshGeneric_Interpolated(dm, label, value, PETSC_FALSE, PETSC_TRUE, 1, subdm)); 3792766ab985SMatthew G. Knepley PetscFunctionReturn(0); 3793766ab985SMatthew G. Knepley } 3794766ab985SMatthew G. Knepley 3795c08575a3SMatthew G. Knepley /*@C 37967d2fefb6SMatthew G. Knepley DMPlexCreateCohesiveSubmesh - Extract from a mesh with cohesive cells the hypersurface defined by one face of the cells. Optionally, a Label can be given to restrict the cells. 3797766ab985SMatthew G. Knepley 3798766ab985SMatthew G. Knepley Input Parameters: 3799766ab985SMatthew G. Knepley + dm - The original mesh 380027c04023SMatthew G. Knepley . hasLagrange - The mesh has Lagrange unknowns in the cohesive cells 38017afc1a8bSJed Brown . label - A label name, or NULL 380227c04023SMatthew G. Knepley - value - A label value 3803766ab985SMatthew G. Knepley 3804766ab985SMatthew G. Knepley Output Parameter: 3805766ab985SMatthew G. Knepley . subdm - The surface mesh 3806766ab985SMatthew G. Knepley 3807766ab985SMatthew G. Knepley Note: This function produces a DMLabel mapping original points in the submesh to their depth. This can be obtained using DMPlexGetSubpointMap(). 3808766ab985SMatthew G. Knepley 3809766ab985SMatthew G. Knepley Level: developer 3810766ab985SMatthew G. Knepley 3811db781477SPatrick Sanan .seealso: `DMPlexGetSubpointMap()`, `DMPlexCreateSubmesh()` 3812c08575a3SMatthew G. Knepley @*/ 381327c04023SMatthew G. Knepley PetscErrorCode DMPlexCreateCohesiveSubmesh(DM dm, PetscBool hasLagrange, const char label[], PetscInt value, DM *subdm) 3814766ab985SMatthew G. Knepley { 3815c0e8cf5fSMatthew G. Knepley PetscInt dim, cdim, depth; 3816766ab985SMatthew G. Knepley 3817766ab985SMatthew G. Knepley PetscFunctionBegin; 3818766ab985SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 381927c04023SMatthew G. Knepley PetscValidPointer(subdm, 5); 38209566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 38219566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepth(dm, &depth)); 38229566063dSJacob Faibussowitsch PetscCall(DMCreate(PetscObjectComm((PetscObject)dm), subdm)); 38239566063dSJacob Faibussowitsch PetscCall(DMSetType(*subdm, DMPLEX)); 38249566063dSJacob Faibussowitsch PetscCall(DMSetDimension(*subdm, dim-1)); 38259566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDim(dm, &cdim)); 38269566063dSJacob Faibussowitsch PetscCall(DMSetCoordinateDim(*subdm, cdim)); 3827766ab985SMatthew G. Knepley if (depth == dim) { 38289566063dSJacob Faibussowitsch PetscCall(DMPlexCreateCohesiveSubmesh_Interpolated(dm, label, value, *subdm)); 3829766ab985SMatthew G. Knepley } else { 38309566063dSJacob Faibussowitsch PetscCall(DMPlexCreateCohesiveSubmesh_Uninterpolated(dm, hasLagrange, label, value, *subdm)); 3831e6ccafaeSMatthew G Knepley } 38329566063dSJacob Faibussowitsch PetscCall(DMPlexCopy_Internal(dm, PETSC_TRUE, *subdm)); 3833e6ccafaeSMatthew G Knepley PetscFunctionReturn(0); 3834e6ccafaeSMatthew G Knepley } 3835e6ccafaeSMatthew G Knepley 3836bec263e5SMatthew G. Knepley /*@ 3837bec263e5SMatthew G. Knepley DMPlexFilter - Extract a subset of mesh cells defined by a label as a separate mesh 3838bec263e5SMatthew G. Knepley 3839bec263e5SMatthew G. Knepley Input Parameters: 3840bec263e5SMatthew G. Knepley + dm - The original mesh 3841bec263e5SMatthew G. Knepley . cellLabel - The DMLabel marking cells contained in the new mesh 3842bec263e5SMatthew G. Knepley - value - The label value to use 3843bec263e5SMatthew G. Knepley 3844bec263e5SMatthew G. Knepley Output Parameter: 3845bec263e5SMatthew G. Knepley . subdm - The new mesh 3846bec263e5SMatthew G. Knepley 3847bec263e5SMatthew G. Knepley Note: This function produces a DMLabel mapping original points in the submesh to their depth. This can be obtained using DMPlexGetSubpointMap(). 3848bec263e5SMatthew G. Knepley 3849bec263e5SMatthew G. Knepley Level: developer 3850bec263e5SMatthew G. Knepley 3851db781477SPatrick Sanan .seealso: `DMPlexGetSubpointMap()`, `DMGetLabel()`, `DMLabelSetValue()` 3852bec263e5SMatthew G. Knepley @*/ 3853bec263e5SMatthew G. Knepley PetscErrorCode DMPlexFilter(DM dm, DMLabel cellLabel, PetscInt value, DM *subdm) 3854bec263e5SMatthew G. Knepley { 3855bec263e5SMatthew G. Knepley PetscInt dim; 3856bec263e5SMatthew G. Knepley 3857bec263e5SMatthew G. Knepley PetscFunctionBegin; 3858bec263e5SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 3859064a246eSJacob Faibussowitsch PetscValidPointer(subdm, 4); 38609566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 38619566063dSJacob Faibussowitsch PetscCall(DMCreate(PetscObjectComm((PetscObject) dm), subdm)); 38629566063dSJacob Faibussowitsch PetscCall(DMSetType(*subdm, DMPLEX)); 38639566063dSJacob Faibussowitsch PetscCall(DMSetDimension(*subdm, dim)); 3864bec263e5SMatthew G. Knepley /* Extract submesh in place, could be empty on some procs, could have inconsistency if procs do not both extract a shared cell */ 38659566063dSJacob Faibussowitsch PetscCall(DMPlexCreateSubmeshGeneric_Interpolated(dm, cellLabel, value, PETSC_FALSE, PETSC_FALSE, 0, *subdm)); 38669566063dSJacob Faibussowitsch PetscCall(DMPlexCopy_Internal(dm, PETSC_TRUE, *subdm)); 3867bec263e5SMatthew G. Knepley PetscFunctionReturn(0); 3868bec263e5SMatthew G. Knepley } 3869bec263e5SMatthew G. Knepley 387064beef6dSMatthew G. Knepley /*@ 387164beef6dSMatthew G. Knepley DMPlexGetSubpointMap - Returns a DMLabel with point dimension as values 387264beef6dSMatthew G. Knepley 387364beef6dSMatthew G. Knepley Input Parameter: 387464beef6dSMatthew G. Knepley . dm - The submesh DM 387564beef6dSMatthew G. Knepley 387664beef6dSMatthew G. Knepley Output Parameter: 387764beef6dSMatthew G. Knepley . subpointMap - The DMLabel of all the points from the original mesh in this submesh, or NULL if this is not a submesh 387864beef6dSMatthew G. Knepley 387964beef6dSMatthew G. Knepley Level: developer 388064beef6dSMatthew G. Knepley 3881db781477SPatrick Sanan .seealso: `DMPlexCreateSubmesh()`, `DMPlexGetSubpointIS()` 388264beef6dSMatthew G. Knepley @*/ 3883e6ccafaeSMatthew G Knepley PetscErrorCode DMPlexGetSubpointMap(DM dm, DMLabel *subpointMap) 3884e6ccafaeSMatthew G Knepley { 3885e6ccafaeSMatthew G Knepley PetscFunctionBegin; 3886e6ccafaeSMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 3887e6ccafaeSMatthew G Knepley PetscValidPointer(subpointMap, 2); 388865663942SMatthew G. Knepley *subpointMap = ((DM_Plex*) dm->data)->subpointMap; 3889e6ccafaeSMatthew G Knepley PetscFunctionReturn(0); 3890e6ccafaeSMatthew G Knepley } 3891e6ccafaeSMatthew G Knepley 3892c08575a3SMatthew G. Knepley /*@ 3893c08575a3SMatthew G. Knepley DMPlexSetSubpointMap - Sets the DMLabel with point dimension as values 3894c08575a3SMatthew G. Knepley 3895c08575a3SMatthew G. Knepley Input Parameters: 3896c08575a3SMatthew G. Knepley + dm - The submesh DM 3897c08575a3SMatthew G. Knepley - subpointMap - The DMLabel of all the points from the original mesh in this submesh 3898c08575a3SMatthew G. Knepley 3899c08575a3SMatthew G. Knepley Note: Should normally not be called by the user, since it is set in DMPlexCreateSubmesh() 3900c08575a3SMatthew G. Knepley 3901c08575a3SMatthew G. Knepley Level: developer 3902c08575a3SMatthew G. Knepley 3903db781477SPatrick Sanan .seealso: `DMPlexCreateSubmesh()`, `DMPlexGetSubpointIS()` 3904c08575a3SMatthew G. Knepley @*/ 3905e6ccafaeSMatthew G Knepley PetscErrorCode DMPlexSetSubpointMap(DM dm, DMLabel subpointMap) 3906e6ccafaeSMatthew G Knepley { 3907e6ccafaeSMatthew G Knepley DM_Plex *mesh = (DM_Plex *) dm->data; 3908285d324eSMatthew G. Knepley DMLabel tmp; 3909e6ccafaeSMatthew G Knepley 3910e6ccafaeSMatthew G Knepley PetscFunctionBegin; 3911e6ccafaeSMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 3912285d324eSMatthew G. Knepley tmp = mesh->subpointMap; 3913e6ccafaeSMatthew G Knepley mesh->subpointMap = subpointMap; 39149566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject) mesh->subpointMap)); 39159566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&tmp)); 3916e6ccafaeSMatthew G Knepley PetscFunctionReturn(0); 3917e6ccafaeSMatthew G Knepley } 3918e6ccafaeSMatthew G Knepley 391997d8846cSMatthew Knepley static PetscErrorCode DMPlexCreateSubpointIS_Internal(DM dm, IS *subpointIS) 392097d8846cSMatthew Knepley { 392197d8846cSMatthew Knepley DMLabel spmap; 392297d8846cSMatthew Knepley PetscInt depth, d; 392397d8846cSMatthew Knepley 392497d8846cSMatthew Knepley PetscFunctionBegin; 39259566063dSJacob Faibussowitsch PetscCall(DMPlexGetSubpointMap(dm, &spmap)); 39269566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepth(dm, &depth)); 392797d8846cSMatthew Knepley if (spmap && depth >= 0) { 392897d8846cSMatthew Knepley DM_Plex *mesh = (DM_Plex *) dm->data; 392997d8846cSMatthew Knepley PetscInt *points, *depths; 393097d8846cSMatthew Knepley PetscInt pStart, pEnd, p, off; 393197d8846cSMatthew Knepley 39329566063dSJacob Faibussowitsch PetscCall(DMPlexGetChart(dm, &pStart, &pEnd)); 393363a3b9bcSJacob Faibussowitsch PetscCheck(!pStart,PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Submeshes must start the point numbering at 0, not %" PetscInt_FMT, pStart); 39349566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(pEnd, &points)); 39359566063dSJacob Faibussowitsch PetscCall(DMGetWorkArray(dm, depth+1, MPIU_INT, &depths)); 393697d8846cSMatthew Knepley depths[0] = depth; 393797d8846cSMatthew Knepley depths[1] = 0; 393897d8846cSMatthew Knepley for (d = 2; d <= depth; ++d) {depths[d] = depth+1 - d;} 393997d8846cSMatthew Knepley for (d = 0, off = 0; d <= depth; ++d) { 394097d8846cSMatthew Knepley const PetscInt dep = depths[d]; 394197d8846cSMatthew Knepley PetscInt depStart, depEnd, n; 394297d8846cSMatthew Knepley 39439566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthStratum(dm, dep, &depStart, &depEnd)); 39449566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumSize(spmap, dep, &n)); 394597d8846cSMatthew Knepley if (((d < 2) && (depth > 1)) || (d == 1)) { /* Only check vertices and cells for now since the map is broken for others */ 394663a3b9bcSJacob Faibussowitsch PetscCheck(n == depEnd-depStart,PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "The number of mapped submesh points %" PetscInt_FMT " at depth %" PetscInt_FMT " should be %" PetscInt_FMT, n, dep, depEnd-depStart); 394797d8846cSMatthew Knepley } else { 394897d8846cSMatthew Knepley if (!n) { 394997d8846cSMatthew Knepley if (d == 0) { 395097d8846cSMatthew Knepley /* Missing cells */ 395197d8846cSMatthew Knepley for (p = 0; p < depEnd-depStart; ++p, ++off) points[off] = -1; 395297d8846cSMatthew Knepley } else { 395397d8846cSMatthew Knepley /* Missing faces */ 395497d8846cSMatthew Knepley for (p = 0; p < depEnd-depStart; ++p, ++off) points[off] = PETSC_MAX_INT; 395597d8846cSMatthew Knepley } 395697d8846cSMatthew Knepley } 395797d8846cSMatthew Knepley } 395897d8846cSMatthew Knepley if (n) { 395997d8846cSMatthew Knepley IS is; 396097d8846cSMatthew Knepley const PetscInt *opoints; 396197d8846cSMatthew Knepley 39629566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(spmap, dep, &is)); 39639566063dSJacob Faibussowitsch PetscCall(ISGetIndices(is, &opoints)); 396497d8846cSMatthew Knepley for (p = 0; p < n; ++p, ++off) points[off] = opoints[p]; 39659566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(is, &opoints)); 39669566063dSJacob Faibussowitsch PetscCall(ISDestroy(&is)); 396797d8846cSMatthew Knepley } 396897d8846cSMatthew Knepley } 39699566063dSJacob Faibussowitsch PetscCall(DMRestoreWorkArray(dm, depth+1, MPIU_INT, &depths)); 397063a3b9bcSJacob Faibussowitsch PetscCheck(off == pEnd,PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "The number of mapped submesh points %" PetscInt_FMT " should be %" PetscInt_FMT, off, pEnd); 39719566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, pEnd, points, PETSC_OWN_POINTER, subpointIS)); 39729566063dSJacob Faibussowitsch PetscCall(PetscObjectStateGet((PetscObject) spmap, &mesh->subpointState)); 397397d8846cSMatthew Knepley } 397497d8846cSMatthew Knepley PetscFunctionReturn(0); 397597d8846cSMatthew Knepley } 397697d8846cSMatthew Knepley 397764beef6dSMatthew G. Knepley /*@ 397897d8846cSMatthew Knepley DMPlexGetSubpointIS - Returns an IS covering the entire subdm chart with the original points as data 3979e6ccafaeSMatthew G Knepley 3980e6ccafaeSMatthew G Knepley Input Parameter: 3981e6ccafaeSMatthew G Knepley . dm - The submesh DM 3982e6ccafaeSMatthew G Knepley 3983e6ccafaeSMatthew G Knepley Output Parameter: 39840298fd71SBarry Smith . subpointIS - The IS of all the points from the original mesh in this submesh, or NULL if this is not a submesh 3985e6ccafaeSMatthew G Knepley 39863982b651SMatthew G. Knepley Note: This IS is guaranteed to be sorted by the construction of the submesh 398764beef6dSMatthew G. Knepley 398864beef6dSMatthew G. Knepley Level: developer 398964beef6dSMatthew G. Knepley 3990db781477SPatrick Sanan .seealso: `DMPlexCreateSubmesh()`, `DMPlexGetSubpointMap()` 399164beef6dSMatthew G. Knepley @*/ 399297d8846cSMatthew Knepley PetscErrorCode DMPlexGetSubpointIS(DM dm, IS *subpointIS) 3993e6ccafaeSMatthew G Knepley { 399497d8846cSMatthew Knepley DM_Plex *mesh = (DM_Plex *) dm->data; 399597d8846cSMatthew Knepley DMLabel spmap; 399697d8846cSMatthew Knepley PetscObjectState state; 3997e6ccafaeSMatthew G Knepley 3998e6ccafaeSMatthew G Knepley PetscFunctionBegin; 3999e6ccafaeSMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 4000e6ccafaeSMatthew G Knepley PetscValidPointer(subpointIS, 2); 40019566063dSJacob Faibussowitsch PetscCall(DMPlexGetSubpointMap(dm, &spmap)); 40029566063dSJacob Faibussowitsch PetscCall(PetscObjectStateGet((PetscObject) spmap, &state)); 40039566063dSJacob Faibussowitsch if (state != mesh->subpointState || !mesh->subpointIS) PetscCall(DMPlexCreateSubpointIS_Internal(dm, &mesh->subpointIS)); 400497d8846cSMatthew Knepley *subpointIS = mesh->subpointIS; 4005e6ccafaeSMatthew G Knepley PetscFunctionReturn(0); 4006e6ccafaeSMatthew G Knepley } 4007559a1558SMatthew G. Knepley 4008559a1558SMatthew G. Knepley /*@ 4009a6e0b375SMatthew G. Knepley DMGetEnclosureRelation - Get the relationship between dmA and dmB 4010559a1558SMatthew G. Knepley 4011559a1558SMatthew G. Knepley Input Parameters: 4012a6e0b375SMatthew G. Knepley + dmA - The first DM 4013a6e0b375SMatthew G. Knepley - dmB - The second DM 4014559a1558SMatthew G. Knepley 4015559a1558SMatthew G. Knepley Output Parameter: 4016a6e0b375SMatthew G. Knepley . rel - The relation of dmA to dmB 4017559a1558SMatthew G. Knepley 4018a6e0b375SMatthew G. Knepley Level: intermediate 4019559a1558SMatthew G. Knepley 4020db781477SPatrick Sanan .seealso: `DMGetEnclosurePoint()` 4021559a1558SMatthew G. Knepley @*/ 4022a6e0b375SMatthew G. Knepley PetscErrorCode DMGetEnclosureRelation(DM dmA, DM dmB, DMEnclosureType *rel) 4023559a1558SMatthew G. Knepley { 4024a6e0b375SMatthew G. Knepley DM plexA, plexB, sdm; 4025559a1558SMatthew G. Knepley DMLabel spmap; 4026a6e0b375SMatthew G. Knepley PetscInt pStartA, pEndA, pStartB, pEndB, NpA, NpB; 4027559a1558SMatthew G. Knepley 402844171101SMatthew G. Knepley PetscFunctionBegin; 4029a6e0b375SMatthew G. Knepley PetscValidPointer(rel, 3); 4030a6e0b375SMatthew G. Knepley *rel = DM_ENC_NONE; 4031a6e0b375SMatthew G. Knepley if (!dmA || !dmB) PetscFunctionReturn(0); 4032a6e0b375SMatthew G. Knepley PetscValidHeaderSpecific(dmA, DM_CLASSID, 1); 4033064a246eSJacob Faibussowitsch PetscValidHeaderSpecific(dmB, DM_CLASSID, 2); 4034a6e0b375SMatthew G. Knepley if (dmA == dmB) {*rel = DM_ENC_EQUALITY; PetscFunctionReturn(0);} 40359566063dSJacob Faibussowitsch PetscCall(DMConvert(dmA, DMPLEX, &plexA)); 40369566063dSJacob Faibussowitsch PetscCall(DMConvert(dmB, DMPLEX, &plexB)); 40379566063dSJacob Faibussowitsch PetscCall(DMPlexGetChart(plexA, &pStartA, &pEndA)); 40389566063dSJacob Faibussowitsch PetscCall(DMPlexGetChart(plexB, &pStartB, &pEndB)); 4039a6e0b375SMatthew G. Knepley /* Assumption 1: subDMs have smaller charts than the DMs that they originate from 4040a6e0b375SMatthew G. Knepley - The degenerate case of a subdomain which includes all of the domain on some process can be treated as equality */ 4041a6e0b375SMatthew G. Knepley if ((pStartA == pStartB) && (pEndA == pEndB)) { 4042a6e0b375SMatthew G. Knepley *rel = DM_ENC_EQUALITY; 4043a6e0b375SMatthew G. Knepley goto end; 4044559a1558SMatthew G. Knepley } 4045a6e0b375SMatthew G. Knepley NpA = pEndA - pStartA; 4046a6e0b375SMatthew G. Knepley NpB = pEndB - pStartB; 4047a6e0b375SMatthew G. Knepley if (NpA == NpB) goto end; 4048a6e0b375SMatthew G. Knepley sdm = NpA > NpB ? plexB : plexA; /* The other is the original, enclosing dm */ 40499566063dSJacob Faibussowitsch PetscCall(DMPlexGetSubpointMap(sdm, &spmap)); 4050a6e0b375SMatthew G. Knepley if (!spmap) goto end; 4051a6e0b375SMatthew G. Knepley /* TODO Check the space mapped to by subpointMap is same size as dm */ 4052a6e0b375SMatthew G. Knepley if (NpA > NpB) { 4053a6e0b375SMatthew G. Knepley *rel = DM_ENC_SUPERMESH; 4054a6e0b375SMatthew G. Knepley } else { 4055a6e0b375SMatthew G. Knepley *rel = DM_ENC_SUBMESH; 4056a6e0b375SMatthew G. Knepley } 4057a6e0b375SMatthew G. Knepley end: 40589566063dSJacob Faibussowitsch PetscCall(DMDestroy(&plexA)); 40599566063dSJacob Faibussowitsch PetscCall(DMDestroy(&plexB)); 4060559a1558SMatthew G. Knepley PetscFunctionReturn(0); 4061559a1558SMatthew G. Knepley } 406244171101SMatthew G. Knepley 406344171101SMatthew G. Knepley /*@ 4064a6e0b375SMatthew G. Knepley DMGetEnclosurePoint - Get the point pA in dmA which corresponds to the point pB in dmB 406544171101SMatthew G. Knepley 406644171101SMatthew G. Knepley Input Parameters: 4067a6e0b375SMatthew G. Knepley + dmA - The first DM 4068a6e0b375SMatthew G. Knepley . dmB - The second DM 4069a6e0b375SMatthew G. Knepley . etype - The type of enclosure relation that dmA has to dmB 4070a6e0b375SMatthew G. Knepley - pB - A point of dmB 407144171101SMatthew G. Knepley 407244171101SMatthew G. Knepley Output Parameter: 4073a6e0b375SMatthew G. Knepley . pA - The corresponding point of dmA 407444171101SMatthew G. Knepley 4075a6e0b375SMatthew G. Knepley Level: intermediate 407644171101SMatthew G. Knepley 4077db781477SPatrick Sanan .seealso: `DMGetEnclosureRelation()` 407844171101SMatthew G. Knepley @*/ 4079a6e0b375SMatthew G. Knepley PetscErrorCode DMGetEnclosurePoint(DM dmA, DM dmB, DMEnclosureType etype, PetscInt pB, PetscInt *pA) 408044171101SMatthew G. Knepley { 4081a6e0b375SMatthew G. Knepley DM sdm; 4082a6e0b375SMatthew G. Knepley IS subpointIS; 4083a6e0b375SMatthew G. Knepley const PetscInt *subpoints; 4084a6e0b375SMatthew G. Knepley PetscInt numSubpoints; 408544171101SMatthew G. Knepley 408644171101SMatthew G. Knepley PetscFunctionBegin; 4087a6e0b375SMatthew G. Knepley /* TODO Cache the IS, making it look like an index */ 4088a6e0b375SMatthew G. Knepley switch (etype) { 4089a6e0b375SMatthew G. Knepley case DM_ENC_SUPERMESH: 4090a6e0b375SMatthew G. Knepley sdm = dmB; 40919566063dSJacob Faibussowitsch PetscCall(DMPlexGetSubpointIS(sdm, &subpointIS)); 40929566063dSJacob Faibussowitsch PetscCall(ISGetIndices(subpointIS, &subpoints)); 4093a6e0b375SMatthew G. Knepley *pA = subpoints[pB]; 40949566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(subpointIS, &subpoints)); 4095a6e0b375SMatthew G. Knepley break; 4096a6e0b375SMatthew G. Knepley case DM_ENC_SUBMESH: 4097a6e0b375SMatthew G. Knepley sdm = dmA; 40989566063dSJacob Faibussowitsch PetscCall(DMPlexGetSubpointIS(sdm, &subpointIS)); 40999566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(subpointIS, &numSubpoints)); 41009566063dSJacob Faibussowitsch PetscCall(ISGetIndices(subpointIS, &subpoints)); 41019566063dSJacob Faibussowitsch PetscCall(PetscFindInt(pB, numSubpoints, subpoints, pA)); 4102a6e0b375SMatthew G. Knepley if (*pA < 0) { 41039566063dSJacob Faibussowitsch PetscCall(DMViewFromOptions(dmA, NULL, "-dm_enc_A_view")); 41049566063dSJacob Faibussowitsch PetscCall(DMViewFromOptions(dmB, NULL, "-dm_enc_B_view")); 410563a3b9bcSJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Point %" PetscInt_FMT " not found in submesh", pB); 4106a6e0b375SMatthew G. Knepley } 41079566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(subpointIS, &subpoints)); 4108a6e0b375SMatthew G. Knepley break; 4109a6e0b375SMatthew G. Knepley case DM_ENC_EQUALITY: 4110a6e0b375SMatthew G. Knepley case DM_ENC_NONE: 4111a6e0b375SMatthew G. Knepley *pA = pB;break; 4112a6e0b375SMatthew G. Knepley case DM_ENC_UNKNOWN: 4113a6e0b375SMatthew G. Knepley { 4114a6e0b375SMatthew G. Knepley DMEnclosureType enc; 411544171101SMatthew G. Knepley 41169566063dSJacob Faibussowitsch PetscCall(DMGetEnclosureRelation(dmA, dmB, &enc)); 41179566063dSJacob Faibussowitsch PetscCall(DMGetEnclosurePoint(dmA, dmB, enc, pB, pA)); 4118a6e0b375SMatthew G. Knepley } 4119a6e0b375SMatthew G. Knepley break; 412098921bdaSJacob Faibussowitsch default: SETERRQ(PetscObjectComm((PetscObject) dmA), PETSC_ERR_ARG_OUTOFRANGE, "Invalid enclosure type %d", (int) etype); 412144171101SMatthew G. Knepley } 412244171101SMatthew G. Knepley PetscFunctionReturn(0); 412344171101SMatthew G. Knepley } 4124