1552f7358SJed Brown #include <petsc-private/pleximpl.h> 2552f7358SJed Brown #include <../src/sys/classes/viewer/impls/vtk/vtkvimpl.h> 3552f7358SJed Brown 4552f7358SJed Brown typedef struct { 5552f7358SJed Brown PetscInt nvertices; 6552f7358SJed Brown PetscInt ncells; 7552f7358SJed Brown PetscInt nconn; /* number of entries in cell->vertex connectivity array */ 8552f7358SJed Brown } PieceInfo; 9552f7358SJed Brown 10552f7358SJed Brown #if defined(PETSC_USE_REAL_SINGLE) 11552f7358SJed Brown static const char precision[] = "Float32"; 12552f7358SJed Brown #elif defined(PETSC_USE_REAL_DOUBLE) 13552f7358SJed Brown static const char precision[] = "Float64"; 14552f7358SJed Brown #else 15552f7358SJed Brown static const char precision[] = "UnknownPrecision"; 16552f7358SJed Brown #endif 17552f7358SJed Brown 18552f7358SJed Brown #undef __FUNCT__ 19552f7358SJed Brown #define __FUNCT__ "TransferWrite" 20552f7358SJed Brown static PetscErrorCode TransferWrite(PetscViewer viewer,FILE *fp,PetscMPIInt srank,PetscMPIInt root,const void *send,void *recv,PetscMPIInt count,PetscDataType datatype,PetscMPIInt tag) 21552f7358SJed Brown { 22552f7358SJed Brown PetscMPIInt rank; 23552f7358SJed Brown PetscErrorCode ierr; 24*ce94432eSBarry Smith MPI_Comm comm; 25552f7358SJed Brown MPI_Datatype mpidatatype; 26552f7358SJed Brown 27552f7358SJed Brown PetscFunctionBegin; 28*ce94432eSBarry Smith ierr = PetscObjectGetComm((PetscObject)viewer,&comm);CHKERRQ(ierr); 29552f7358SJed Brown ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 30552f7358SJed Brown ierr = PetscDataTypeToMPIDataType(datatype,&mpidatatype);CHKERRQ(ierr); 31552f7358SJed Brown 32552f7358SJed Brown if (rank == srank && rank != root) { 33552f7358SJed Brown ierr = MPI_Send((void*)send,count,mpidatatype,root,tag,comm);CHKERRQ(ierr); 34552f7358SJed Brown } else if (rank == root) { 35552f7358SJed Brown const void *buffer; 36552f7358SJed Brown if (root == srank) { /* self */ 37552f7358SJed Brown buffer = send; 38552f7358SJed Brown } else { 39552f7358SJed Brown MPI_Status status; 40552f7358SJed Brown PetscMPIInt nrecv; 41552f7358SJed Brown ierr = MPI_Recv(recv,count,mpidatatype,srank,tag,comm,&status);CHKERRQ(ierr); 42552f7358SJed Brown ierr = MPI_Get_count(&status,mpidatatype,&nrecv);CHKERRQ(ierr); 43552f7358SJed Brown if (count != nrecv) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Array size mismatch"); 44552f7358SJed Brown buffer = recv; 45552f7358SJed Brown } 46552f7358SJed Brown ierr = PetscViewerVTKFWrite(viewer,fp,buffer,count,datatype);CHKERRQ(ierr); 47552f7358SJed Brown } 48552f7358SJed Brown PetscFunctionReturn(0); 49552f7358SJed Brown } 50552f7358SJed Brown 51552f7358SJed Brown #undef __FUNCT__ 52552f7358SJed Brown #define __FUNCT__ "DMPlexGetVTKConnectivity" 53552f7358SJed Brown static PetscErrorCode DMPlexGetVTKConnectivity(DM dm,PieceInfo *piece,PetscVTKInt **oconn,PetscVTKInt **ooffsets,PetscVTKType **otypes) 54552f7358SJed Brown { 55552f7358SJed Brown PetscErrorCode ierr; 56552f7358SJed Brown PetscVTKInt *conn,*offsets; 57552f7358SJed Brown PetscVTKType *types; 58552f7358SJed Brown PetscInt dim,vStart,vEnd,cStart,cEnd,pStart,pEnd,cellHeight,cMax,numLabelCells,hasLabel,c,v,countcell,countconn; 59552f7358SJed Brown 60552f7358SJed Brown PetscFunctionBegin; 61552f7358SJed Brown ierr = PetscMalloc3(piece->nconn,PetscVTKInt,&conn,piece->ncells,PetscVTKInt,&offsets,piece->ncells,PetscVTKType,&types);CHKERRQ(ierr); 62552f7358SJed Brown 63552f7358SJed Brown ierr = DMPlexGetDimension(dm,&dim);CHKERRQ(ierr); 64552f7358SJed Brown ierr = DMPlexGetChart(dm,&pStart,&pEnd);CHKERRQ(ierr); 65552f7358SJed Brown ierr = DMPlexGetVTKCellHeight(dm, &cellHeight);CHKERRQ(ierr); 66552f7358SJed Brown ierr = DMPlexGetHeightStratum(dm, cellHeight, &cStart, &cEnd);CHKERRQ(ierr); 67552f7358SJed Brown ierr = DMPlexGetDepthStratum(dm, 0, &vStart, &vEnd);CHKERRQ(ierr); 680298fd71SBarry Smith ierr = DMPlexGetHybridBounds(dm, &cMax, NULL, NULL, NULL);CHKERRQ(ierr); 698865f1eaSKarl Rupp if (cMax >= 0) cEnd = PetscMin(cEnd, cMax); 70552f7358SJed Brown ierr = DMPlexGetStratumSize(dm, "vtk", 1, &numLabelCells);CHKERRQ(ierr); 71552f7358SJed Brown hasLabel = numLabelCells > 0 ? PETSC_TRUE : PETSC_FALSE; 72552f7358SJed Brown 73552f7358SJed Brown countcell = 0; 74552f7358SJed Brown countconn = 0; 75552f7358SJed Brown for (c = cStart; c < cEnd; ++c) { 760298fd71SBarry Smith PetscInt *closure = NULL; 77552f7358SJed Brown PetscInt closureSize,nverts,celltype,startoffset; 78552f7358SJed Brown 79552f7358SJed Brown if (hasLabel) { 80552f7358SJed Brown PetscInt value; 81552f7358SJed Brown 82552f7358SJed Brown ierr = DMPlexGetLabelValue(dm, "vtk", c, &value);CHKERRQ(ierr); 83552f7358SJed Brown if (value != 1) continue; 84552f7358SJed Brown } 85552f7358SJed Brown startoffset = countconn; 86552f7358SJed Brown ierr = DMPlexGetTransitiveClosure(dm, c, PETSC_TRUE, &closureSize, &closure);CHKERRQ(ierr); 87552f7358SJed Brown for (v = 0; v < closureSize*2; v += 2) { 88552f7358SJed Brown if ((closure[v] >= vStart) && (closure[v] < vEnd)) { 89552f7358SJed Brown conn[countconn++] = closure[v] - vStart; 90552f7358SJed Brown } 91552f7358SJed Brown } 92552f7358SJed Brown ierr = DMPlexRestoreTransitiveClosure(dm, c, PETSC_TRUE, &closureSize, &closure);CHKERRQ(ierr); 938865f1eaSKarl Rupp 94552f7358SJed Brown offsets[countcell] = countconn; 958865f1eaSKarl Rupp 96552f7358SJed Brown nverts = countconn - startoffset; 97552f7358SJed Brown ierr = DMPlexVTKGetCellType(dm,dim,nverts,&celltype);CHKERRQ(ierr); 988865f1eaSKarl Rupp 99552f7358SJed Brown types[countcell] = celltype; 100552f7358SJed Brown countcell++; 101552f7358SJed Brown } 102552f7358SJed Brown if (countcell != piece->ncells) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Inconsistent cell count"); 103552f7358SJed Brown if (countconn != piece->nconn) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Inconsistent connectivity count"); 104552f7358SJed Brown *oconn = conn; 105552f7358SJed Brown *ooffsets = offsets; 106552f7358SJed Brown *otypes = types; 107552f7358SJed Brown PetscFunctionReturn(0); 108552f7358SJed Brown } 109552f7358SJed Brown 110552f7358SJed Brown #undef __FUNCT__ 111552f7358SJed Brown #define __FUNCT__ "DMPlexVTKWriteAll_VTU" 112552f7358SJed Brown /* 113552f7358SJed Brown Write all fields that have been provided to the viewer 114552f7358SJed Brown Multi-block XML format with binary appended data. 115552f7358SJed Brown */ 116552f7358SJed Brown PetscErrorCode DMPlexVTKWriteAll_VTU(DM dm,PetscViewer viewer) 117552f7358SJed Brown { 118*ce94432eSBarry Smith MPI_Comm comm; 119552f7358SJed Brown PetscViewer_VTK *vtk = (PetscViewer_VTK*)viewer->data; 120552f7358SJed Brown PetscViewerVTKObjectLink link; 121552f7358SJed Brown FILE *fp; 122552f7358SJed Brown PetscMPIInt rank,size,tag; 123552f7358SJed Brown PetscErrorCode ierr; 124552f7358SJed Brown PetscInt dim,cellHeight,cStart,cEnd,vStart,vEnd,cMax,numLabelCells,hasLabel,c,v,r,i; 1250298fd71SBarry Smith PieceInfo piece,*gpiece = NULL; 1260298fd71SBarry Smith void *buffer = NULL; 127552f7358SJed Brown 128552f7358SJed Brown PetscFunctionBegin; 129*ce94432eSBarry Smith ierr = PetscObjectGetComm((PetscObject)dm,&comm);CHKERRQ(ierr); 130552f7358SJed Brown #if defined(PETSC_USE_COMPLEX) 131*ce94432eSBarry Smith SETERRQ(PetscObjectComm((PetscObject)dm),PETSC_ERR_SUP,"Complex values not supported"); 132552f7358SJed Brown #endif 133552f7358SJed Brown ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 134552f7358SJed Brown ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 135552f7358SJed Brown tag = ((PetscObject)viewer)->tag; 136552f7358SJed Brown 137552f7358SJed Brown ierr = PetscFOpen(comm,vtk->filename,"wb",&fp);CHKERRQ(ierr); 138552f7358SJed Brown ierr = PetscFPrintf(comm,fp,"<?xml version=\"1.0\"?>\n");CHKERRQ(ierr); 139519f805aSKarl Rupp #if defined(PETSC_WORDS_BIGENDIAN) 140552f7358SJed Brown ierr = PetscFPrintf(comm,fp,"<VTKFile type=\"UnstructuredGrid\" version=\"0.1\" byte_order=\"BigEndian\">\n");CHKERRQ(ierr); 141552f7358SJed Brown #else 142552f7358SJed Brown ierr = PetscFPrintf(comm,fp,"<VTKFile type=\"UnstructuredGrid\" version=\"0.1\" byte_order=\"LittleEndian\">\n");CHKERRQ(ierr); 143552f7358SJed Brown #endif 144552f7358SJed Brown ierr = PetscFPrintf(comm,fp," <UnstructuredGrid>\n");CHKERRQ(ierr); 145552f7358SJed Brown 146552f7358SJed Brown ierr = DMPlexGetDimension(dm, &dim);CHKERRQ(ierr); 147552f7358SJed Brown ierr = DMPlexGetVTKCellHeight(dm, &cellHeight);CHKERRQ(ierr); 148552f7358SJed Brown ierr = DMPlexGetHeightStratum(dm, cellHeight, &cStart, &cEnd);CHKERRQ(ierr); 149552f7358SJed Brown ierr = DMPlexGetDepthStratum(dm, 0, &vStart, &vEnd);CHKERRQ(ierr); 1500298fd71SBarry Smith ierr = DMPlexGetHybridBounds(dm, &cMax, NULL, NULL, NULL);CHKERRQ(ierr); 1518865f1eaSKarl Rupp if (cMax >= 0) cEnd = PetscMin(cEnd, cMax); 152552f7358SJed Brown ierr = DMPlexGetStratumSize(dm, "vtk", 1, &numLabelCells);CHKERRQ(ierr); 1538865f1eaSKarl Rupp 154552f7358SJed Brown hasLabel = numLabelCells > 0 ? PETSC_TRUE : PETSC_FALSE; 155552f7358SJed Brown piece.nvertices = vEnd - vStart; 156552f7358SJed Brown piece.ncells = 0; 157552f7358SJed Brown piece.nconn = 0; 158552f7358SJed Brown for (c = cStart; c < cEnd; ++c) { 1590298fd71SBarry Smith PetscInt *closure = NULL; 160552f7358SJed Brown PetscInt closureSize; 161552f7358SJed Brown 162552f7358SJed Brown if (hasLabel) { 163552f7358SJed Brown PetscInt value; 164552f7358SJed Brown 165552f7358SJed Brown ierr = DMPlexGetLabelValue(dm, "vtk", c, &value);CHKERRQ(ierr); 166552f7358SJed Brown if (value != 1) continue; 167552f7358SJed Brown } 168552f7358SJed Brown ierr = DMPlexGetTransitiveClosure(dm, c, PETSC_TRUE, &closureSize, &closure);CHKERRQ(ierr); 169552f7358SJed Brown for (v = 0; v < closureSize*2; v += 2) { 170552f7358SJed Brown if ((closure[v] >= vStart) && (closure[v] < vEnd)) piece.nconn++; 171552f7358SJed Brown } 172552f7358SJed Brown ierr = DMPlexRestoreTransitiveClosure(dm, c, PETSC_TRUE, &closureSize, &closure);CHKERRQ(ierr); 173552f7358SJed Brown piece.ncells++; 174552f7358SJed Brown } 175552f7358SJed Brown if (!rank) {ierr = PetscMalloc(size*sizeof(piece),&gpiece);CHKERRQ(ierr);} 176552f7358SJed Brown ierr = MPI_Gather((PetscInt*)&piece,sizeof(piece)/sizeof(PetscInt),MPIU_INT,(PetscInt*)gpiece,sizeof(piece)/sizeof(PetscInt),MPIU_INT,0,comm);CHKERRQ(ierr); 177552f7358SJed Brown 178552f7358SJed Brown /* 179552f7358SJed Brown * Write file header 180552f7358SJed Brown */ 181552f7358SJed Brown if (!rank) { 182552f7358SJed Brown PetscInt boffset = 0; 183552f7358SJed Brown 184552f7358SJed Brown for (r=0; r<size; r++) { 185552f7358SJed Brown ierr = PetscFPrintf(PETSC_COMM_SELF,fp," <Piece NumberOfPoints=\"%D\" NumberOfCells=\"%D\">\n",gpiece[r].nvertices,gpiece[r].ncells);CHKERRQ(ierr); 186552f7358SJed Brown /* Coordinate positions */ 187552f7358SJed Brown ierr = PetscFPrintf(PETSC_COMM_SELF,fp," <Points>\n");CHKERRQ(ierr); 188552f7358SJed Brown ierr = PetscFPrintf(PETSC_COMM_SELF,fp," <DataArray type=\"%s\" Name=\"Position\" NumberOfComponents=\"3\" format=\"appended\" offset=\"%D\" />\n",precision,boffset);CHKERRQ(ierr); 189552f7358SJed Brown boffset += gpiece[r].nvertices*3*sizeof(PetscScalar) + sizeof(int); 190552f7358SJed Brown ierr = PetscFPrintf(PETSC_COMM_SELF,fp," </Points>\n");CHKERRQ(ierr); 191552f7358SJed Brown /* Cell connectivity */ 192552f7358SJed Brown ierr = PetscFPrintf(PETSC_COMM_SELF,fp," <Cells>\n");CHKERRQ(ierr); 193552f7358SJed Brown ierr = PetscFPrintf(PETSC_COMM_SELF,fp," <DataArray type=\"Int32\" Name=\"connectivity\" NumberOfComponents=\"1\" format=\"appended\" offset=\"%D\" />\n",boffset);CHKERRQ(ierr); 194552f7358SJed Brown boffset += gpiece[r].nconn*sizeof(PetscInt) + sizeof(int); 195552f7358SJed Brown ierr = PetscFPrintf(PETSC_COMM_SELF,fp," <DataArray type=\"Int32\" Name=\"offsets\" NumberOfComponents=\"1\" format=\"appended\" offset=\"%D\" />\n",boffset);CHKERRQ(ierr); 196552f7358SJed Brown boffset += gpiece[r].ncells*sizeof(PetscInt) + sizeof(int); 197552f7358SJed Brown ierr = PetscFPrintf(PETSC_COMM_SELF,fp," <DataArray type=\"UInt8\" Name=\"types\" NumberOfComponents=\"1\" format=\"appended\" offset=\"%D\" />\n",boffset);CHKERRQ(ierr); 198552f7358SJed Brown boffset += gpiece[r].ncells*sizeof(unsigned char) + sizeof(int); 199552f7358SJed Brown ierr = PetscFPrintf(PETSC_COMM_SELF,fp," </Cells>\n");CHKERRQ(ierr); 200552f7358SJed Brown 201552f7358SJed Brown /* 202552f7358SJed Brown * Cell Data headers 203552f7358SJed Brown */ 204552f7358SJed Brown ierr = PetscFPrintf(PETSC_COMM_SELF,fp," <CellData>\n");CHKERRQ(ierr); 205552f7358SJed Brown ierr = PetscFPrintf(PETSC_COMM_SELF,fp," <DataArray type=\"Int32\" Name=\"Rank\" NumberOfComponents=\"1\" format=\"appended\" offset=\"%D\" />\n",boffset);CHKERRQ(ierr); 206552f7358SJed Brown boffset += gpiece[r].ncells*sizeof(int) + sizeof(int); 207552f7358SJed Brown /* all the vectors */ 208552f7358SJed Brown for (link=vtk->link; link; link=link->next) { 209552f7358SJed Brown Vec X = (Vec)link->vec; 210552f7358SJed Brown PetscInt bs; 211552f7358SJed Brown const char *vecname = ""; 212552f7358SJed Brown if ((link->ft != PETSC_VTK_CELL_FIELD) && (link->ft != PETSC_VTK_CELL_VECTOR_FIELD)) continue; 213552f7358SJed Brown if (((PetscObject)X)->name || link != vtk->link) { /* If the object is already named, use it. If it is past the first link, name it to disambiguate. */ 214552f7358SJed Brown ierr = PetscObjectGetName((PetscObject)X,&vecname);CHKERRQ(ierr); 215552f7358SJed Brown } 216552f7358SJed Brown ierr = PetscSectionGetDof(dm->defaultSection,cStart,&bs);CHKERRQ(ierr); 217552f7358SJed Brown for (i=0; i<bs; i++) { 218552f7358SJed Brown char buf[256]; 2190298fd71SBarry Smith const char *fieldname = NULL; 220552f7358SJed Brown /* ierr = DMDAGetFieldName(da,i,&fieldname);CHKERRQ(ierr); */ 221552f7358SJed Brown if (!fieldname) { 222552f7358SJed Brown ierr = PetscSNPrintf(buf,sizeof(buf),"Unnamed%D",i);CHKERRQ(ierr); 223552f7358SJed Brown fieldname = buf; 224552f7358SJed Brown } 225552f7358SJed Brown ierr = PetscFPrintf(comm,fp," <DataArray type=\"%s\" Name=\"%s%s\" NumberOfComponents=\"1\" format=\"appended\" offset=\"%D\" />\n",precision,vecname,fieldname,boffset);CHKERRQ(ierr); 226552f7358SJed Brown boffset += gpiece[r].ncells*sizeof(PetscScalar) + sizeof(int); 227552f7358SJed Brown } 228552f7358SJed Brown } 229552f7358SJed Brown ierr = PetscFPrintf(PETSC_COMM_SELF,fp," </CellData>\n");CHKERRQ(ierr); 230552f7358SJed Brown 231552f7358SJed Brown /* 232552f7358SJed Brown * Point Data headers 233552f7358SJed Brown */ 234552f7358SJed Brown ierr = PetscFPrintf(PETSC_COMM_SELF,fp," <PointData>\n");CHKERRQ(ierr); 235552f7358SJed Brown for (link=vtk->link; link; link=link->next) { 236552f7358SJed Brown Vec X = (Vec)link->vec; 237552f7358SJed Brown PetscInt bs; 238552f7358SJed Brown const char *vecname = ""; 239552f7358SJed Brown if ((link->ft != PETSC_VTK_POINT_FIELD) && (link->ft != PETSC_VTK_POINT_VECTOR_FIELD)) continue; 240552f7358SJed Brown if (((PetscObject)X)->name || link != vtk->link) { /* If the object is already named, use it. If it is past the first link, name it to disambiguate. */ 241552f7358SJed Brown ierr = PetscObjectGetName((PetscObject)X,&vecname);CHKERRQ(ierr); 242552f7358SJed Brown } 243552f7358SJed Brown ierr = PetscSectionGetDof(dm->defaultSection,vStart,&bs);CHKERRQ(ierr); 244552f7358SJed Brown for (i=0; i<bs; i++) { 245552f7358SJed Brown char fieldname[256]; 246552f7358SJed Brown ierr = PetscSNPrintf(fieldname,sizeof(fieldname),"Point%D",i);CHKERRQ(ierr); 247552f7358SJed Brown ierr = PetscFPrintf(comm,fp," <DataArray type=\"%s\" Name=\"%s%s\" NumberOfComponents=\"1\" format=\"appended\" offset=\"%D\" />\n",precision,vecname,fieldname,boffset);CHKERRQ(ierr); 248552f7358SJed Brown boffset += gpiece[r].nvertices*sizeof(PetscScalar) + sizeof(int); 249552f7358SJed Brown } 250552f7358SJed Brown } 251552f7358SJed Brown ierr = PetscFPrintf(PETSC_COMM_SELF,fp," </PointData>\n");CHKERRQ(ierr); 252552f7358SJed Brown 253552f7358SJed Brown ierr = PetscFPrintf(PETSC_COMM_SELF,fp," </Piece>\n");CHKERRQ(ierr); 254552f7358SJed Brown } 255552f7358SJed Brown } 256552f7358SJed Brown 257552f7358SJed Brown ierr = PetscFPrintf(comm,fp," </UnstructuredGrid>\n");CHKERRQ(ierr); 258552f7358SJed Brown ierr = PetscFPrintf(comm,fp," <AppendedData encoding=\"raw\">\n");CHKERRQ(ierr); 259552f7358SJed Brown ierr = PetscFPrintf(comm,fp,"_");CHKERRQ(ierr); 260552f7358SJed Brown 261552f7358SJed Brown if (!rank) { 262552f7358SJed Brown PetscInt maxsize = 0; 263552f7358SJed Brown for (r=0; r<size; r++) { 264552f7358SJed Brown maxsize = PetscMax(maxsize, (PetscInt) (gpiece[r].nvertices*3*sizeof(PetscScalar))); 265552f7358SJed Brown maxsize = PetscMax(maxsize, (PetscInt) (gpiece[r].ncells*sizeof(PetscScalar))); 266552f7358SJed Brown maxsize = PetscMax(maxsize, (PetscInt) (gpiece[r].nconn*sizeof(PetscVTKInt))); 267552f7358SJed Brown } 268552f7358SJed Brown ierr = PetscMalloc(maxsize,&buffer);CHKERRQ(ierr); 269552f7358SJed Brown } 270552f7358SJed Brown for (r=0; r<size; r++) { 271552f7358SJed Brown if (r == rank) { 272552f7358SJed Brown PetscInt nsend; 273552f7358SJed Brown { /* Position */ 274552f7358SJed Brown const PetscScalar *x; 2750298fd71SBarry Smith PetscScalar *y = NULL; 276552f7358SJed Brown Vec coords; 277552f7358SJed Brown nsend = piece.nvertices*3; 278552f7358SJed Brown ierr = DMGetCoordinatesLocal(dm,&coords);CHKERRQ(ierr); 279552f7358SJed Brown ierr = VecGetArrayRead(coords,&x);CHKERRQ(ierr); 280552f7358SJed Brown if (dim != 3) { 281552f7358SJed Brown ierr = PetscMalloc(piece.nvertices*3*sizeof(PetscScalar),&y);CHKERRQ(ierr); 282552f7358SJed Brown for (i=0; i<piece.nvertices; i++) { 283552f7358SJed Brown y[i*3+0] = x[i*dim+0]; 284552f7358SJed Brown y[i*3+1] = (dim > 1) ? x[i*dim+1] : 0; 285552f7358SJed Brown y[i*3+2] = 0; 286552f7358SJed Brown } 287552f7358SJed Brown } 288552f7358SJed Brown ierr = TransferWrite(viewer,fp,r,0,y ? y : x,buffer,nsend,PETSC_SCALAR,tag);CHKERRQ(ierr); 289552f7358SJed Brown ierr = PetscFree(y);CHKERRQ(ierr); 290552f7358SJed Brown ierr = VecRestoreArrayRead(coords,&x);CHKERRQ(ierr); 291552f7358SJed Brown } 292552f7358SJed Brown { /* Connectivity, offsets, types */ 2930298fd71SBarry Smith PetscVTKInt *connectivity = NULL,*offsets; 294552f7358SJed Brown PetscVTKType *types; 295552f7358SJed Brown ierr = DMPlexGetVTKConnectivity(dm,&piece,&connectivity,&offsets,&types);CHKERRQ(ierr); 296552f7358SJed Brown ierr = TransferWrite(viewer,fp,r,0,connectivity,buffer,piece.nconn,PETSC_INT32,tag);CHKERRQ(ierr); 297552f7358SJed Brown ierr = TransferWrite(viewer,fp,r,0,offsets,buffer,piece.ncells,PETSC_INT32,tag);CHKERRQ(ierr); 298552f7358SJed Brown ierr = TransferWrite(viewer,fp,r,0,types,buffer,piece.ncells,PETSC_UINT8,tag);CHKERRQ(ierr); 299552f7358SJed Brown ierr = PetscFree3(connectivity,offsets,types);CHKERRQ(ierr); 300552f7358SJed Brown } 301552f7358SJed Brown { /* Owners (cell data) */ 302552f7358SJed Brown PetscVTKInt *owners; 303552f7358SJed Brown ierr = PetscMalloc(piece.ncells*sizeof(PetscVTKInt),&owners);CHKERRQ(ierr); 304552f7358SJed Brown for (i=0; i<piece.ncells; i++) owners[i] = rank; 305552f7358SJed Brown ierr = TransferWrite(viewer,fp,r,0,owners,buffer,piece.ncells,PETSC_INT32,tag);CHKERRQ(ierr); 306552f7358SJed Brown ierr = PetscFree(owners);CHKERRQ(ierr); 307552f7358SJed Brown } 308552f7358SJed Brown /* Cell data */ 309552f7358SJed Brown for (link=vtk->link; link; link=link->next) { 310552f7358SJed Brown Vec X = (Vec)link->vec; 311552f7358SJed Brown const PetscScalar *x; 312552f7358SJed Brown PetscScalar *y; 313552f7358SJed Brown PetscInt bs; 314552f7358SJed Brown if ((link->ft != PETSC_VTK_CELL_FIELD) && (link->ft != PETSC_VTK_CELL_VECTOR_FIELD)) continue; 315552f7358SJed Brown ierr = PetscSectionGetDof(dm->defaultSection,cStart,&bs);CHKERRQ(ierr); 316552f7358SJed Brown ierr = VecGetArrayRead(X,&x);CHKERRQ(ierr); 317552f7358SJed Brown ierr = PetscMalloc(piece.ncells*sizeof(PetscScalar),&y);CHKERRQ(ierr); 318552f7358SJed Brown for (i=0; i<bs; i++) { 319552f7358SJed Brown PetscInt cnt; 320552f7358SJed Brown for (c=cStart,cnt=0; c<cEnd; c++) { 321552f7358SJed Brown const PetscScalar *xpoint; 322552f7358SJed Brown if (hasLabel) { /* Ignore some cells */ 323552f7358SJed Brown PetscInt value; 324552f7358SJed Brown ierr = DMPlexGetLabelValue(dm, "vtk", c, &value);CHKERRQ(ierr); 325552f7358SJed Brown if (value != 1) continue; 326552f7358SJed Brown } 327552f7358SJed Brown ierr = DMPlexPointLocalRead(dm,c,x,&xpoint);CHKERRQ(ierr); 328552f7358SJed Brown y[cnt++] = xpoint[i]; 329552f7358SJed Brown } 330552f7358SJed Brown if (cnt != piece.ncells) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Count does not match"); 331552f7358SJed Brown ierr = TransferWrite(viewer,fp,r,0,y,buffer,piece.ncells,PETSC_SCALAR,tag);CHKERRQ(ierr); 332552f7358SJed Brown } 333552f7358SJed Brown ierr = PetscFree(y);CHKERRQ(ierr); 334552f7358SJed Brown ierr = VecRestoreArrayRead(X,&x);CHKERRQ(ierr); 335552f7358SJed Brown } 336552f7358SJed Brown 337552f7358SJed Brown for (link=vtk->link; link; link=link->next) { 338552f7358SJed Brown Vec X = (Vec)link->vec; 339552f7358SJed Brown const PetscScalar *x; 340552f7358SJed Brown PetscScalar *y; 341552f7358SJed Brown PetscInt bs; 342552f7358SJed Brown if ((link->ft != PETSC_VTK_POINT_FIELD) && (link->ft != PETSC_VTK_POINT_VECTOR_FIELD)) continue; 343552f7358SJed Brown ierr = PetscSectionGetDof(dm->defaultSection,vStart,&bs);CHKERRQ(ierr); 344552f7358SJed Brown ierr = VecGetArrayRead(X,&x);CHKERRQ(ierr); 345552f7358SJed Brown ierr = PetscMalloc(piece.nvertices*sizeof(PetscScalar),&y);CHKERRQ(ierr); 346552f7358SJed Brown for (i=0; i<bs; i++) { 347552f7358SJed Brown PetscInt cnt; 348552f7358SJed Brown for (v=vStart,cnt=0; v<vEnd; v++) { 349552f7358SJed Brown const PetscScalar *xpoint; 350552f7358SJed Brown ierr = DMPlexPointLocalRead(dm,c,x,&xpoint);CHKERRQ(ierr); 351552f7358SJed Brown y[cnt++] = xpoint[i]; 352552f7358SJed Brown } 353552f7358SJed Brown if (cnt != piece.nvertices) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Count does not match"); 354552f7358SJed Brown ierr = TransferWrite(viewer,fp,r,0,y,buffer,piece.nvertices,PETSC_SCALAR,tag);CHKERRQ(ierr); 355552f7358SJed Brown } 356552f7358SJed Brown ierr = PetscFree(y);CHKERRQ(ierr); 357552f7358SJed Brown ierr = VecRestoreArrayRead(X,&x);CHKERRQ(ierr); 358552f7358SJed Brown } 359552f7358SJed Brown } else if (!rank) { 3600298fd71SBarry Smith ierr = TransferWrite(viewer,fp,r,0,NULL,buffer,gpiece[r].nvertices*3,PETSC_SCALAR,tag);CHKERRQ(ierr); /* positions */ 3610298fd71SBarry Smith ierr = TransferWrite(viewer,fp,r,0,NULL,buffer,gpiece[r].nconn,PETSC_INT32,tag);CHKERRQ(ierr); /* connectivity */ 3620298fd71SBarry Smith ierr = TransferWrite(viewer,fp,r,0,NULL,buffer,gpiece[r].ncells,PETSC_INT32,tag);CHKERRQ(ierr); /* offsets */ 3630298fd71SBarry Smith ierr = TransferWrite(viewer,fp,r,0,NULL,buffer,gpiece[r].ncells,PETSC_UINT8,tag);CHKERRQ(ierr); /* types */ 3640298fd71SBarry Smith ierr = TransferWrite(viewer,fp,r,0,NULL,buffer,gpiece[r].ncells,PETSC_INT32,tag);CHKERRQ(ierr); /* owner rank (cells) */ 365552f7358SJed Brown /* all cell data */ 366552f7358SJed Brown for (link=vtk->link; link; link=link->next) { 367552f7358SJed Brown PetscInt bs; 368552f7358SJed Brown if ((link->ft != PETSC_VTK_CELL_FIELD) && (link->ft != PETSC_VTK_CELL_VECTOR_FIELD)) continue; 369552f7358SJed Brown ierr = PetscSectionGetDof(dm->defaultSection,vStart,&bs);CHKERRQ(ierr); 370552f7358SJed Brown for (i=0; i<bs; i++) { 3710298fd71SBarry Smith ierr = TransferWrite(viewer,fp,r,0,NULL,buffer,gpiece[r].ncells,PETSC_SCALAR,tag);CHKERRQ(ierr); 372552f7358SJed Brown } 373552f7358SJed Brown } 374552f7358SJed Brown /* all point data */ 375552f7358SJed Brown for (link=vtk->link; link; link=link->next) { 376552f7358SJed Brown PetscInt bs; 377552f7358SJed Brown if ((link->ft != PETSC_VTK_POINT_FIELD) && (link->ft != PETSC_VTK_POINT_VECTOR_FIELD)) continue; 378552f7358SJed Brown ierr = PetscSectionGetDof(dm->defaultSection,vStart,&bs);CHKERRQ(ierr); 379552f7358SJed Brown for (i=0; i<bs; i++) { 3800298fd71SBarry Smith ierr = TransferWrite(viewer,fp,r,0,NULL,buffer,gpiece[r].nvertices,PETSC_SCALAR,tag);CHKERRQ(ierr); 381552f7358SJed Brown } 382552f7358SJed Brown } 383552f7358SJed Brown } 384552f7358SJed Brown } 385552f7358SJed Brown ierr = PetscFree(gpiece);CHKERRQ(ierr); 386552f7358SJed Brown ierr = PetscFree(buffer);CHKERRQ(ierr); 387552f7358SJed Brown ierr = PetscFPrintf(comm,fp,"\n </AppendedData>\n");CHKERRQ(ierr); 388552f7358SJed Brown ierr = PetscFPrintf(comm,fp,"</VTKFile>\n");CHKERRQ(ierr); 389552f7358SJed Brown PetscFunctionReturn(0); 390552f7358SJed Brown } 391