xref: /petsc/src/dm/interface/dm.c (revision 4ad8454beace47809662cdae21ee081016eaa39a)
1 #include <petscvec.h>
2 #include <petsc/private/dmimpl.h>      /*I      "petscdm.h"          I*/
3 #include <petsc/private/dmlabelimpl.h> /*I      "petscdmlabel.h"     I*/
4 #include <petsc/private/petscdsimpl.h> /*I      "petscds.h"     I*/
5 #include <petscdmplex.h>
6 #include <petscdmceed.h>
7 #include <petscdmfield.h>
8 #include <petscsf.h>
9 #include <petscds.h>
10 
11 #ifdef PETSC_HAVE_LIBCEED
12   #include <petscfeceed.h>
13 #endif
14 
15 #if !defined(PETSC_HAVE_WINDOWS_COMPILERS)
16   #include <petsc/private/valgrind/memcheck.h>
17 #endif
18 
19 PetscClassId DM_CLASSID;
20 PetscClassId DMLABEL_CLASSID;
21 PetscLogEvent DM_Convert, DM_GlobalToLocal, DM_LocalToGlobal, DM_LocalToLocal, DM_LocatePoints, DM_Coarsen, DM_Refine, DM_CreateInterpolation, DM_CreateRestriction, DM_CreateInjection, DM_CreateMatrix, DM_CreateMassMatrix, DM_Load, DM_AdaptInterpolator, DM_ProjectFunction;
22 
23 const char *const DMBoundaryTypes[]          = {"NONE", "GHOSTED", "MIRROR", "PERIODIC", "TWIST", "DMBoundaryType", "DM_BOUNDARY_", NULL};
24 const char *const DMBoundaryConditionTypes[] = {"INVALID", "ESSENTIAL", "NATURAL", "INVALID", "INVALID", "ESSENTIAL_FIELD", "NATURAL_FIELD", "INVALID", "INVALID", "ESSENTIAL_BD_FIELD", "NATURAL_RIEMANN", "DMBoundaryConditionType", "DM_BC_", NULL};
25 const char *const DMBlockingTypes[]          = {"TOPOLOGICAL_POINT", "FIELD_NODE", "DMBlockingType", "DM_BLOCKING_", NULL};
26 const char *const DMPolytopeTypes[] =
27   {"vertex",  "segment",      "tensor_segment", "triangle", "quadrilateral",  "tensor_quad",  "tetrahedron", "hexahedron", "triangular_prism", "tensor_triangular_prism", "tensor_quadrilateral_prism", "pyramid", "FV_ghost_cell", "interior_ghost_cell",
28    "unknown", "unknown_cell", "unknown_face",   "invalid",  "DMPolytopeType", "DM_POLYTOPE_", NULL};
29 const char *const DMCopyLabelsModes[] = {"replace", "keep", "fail", "DMCopyLabelsMode", "DM_COPY_LABELS_", NULL};
30 
31 /*@
32   DMCreate - Creates an empty `DM` object. `DM`s are the abstract objects in PETSc that mediate between meshes and discretizations and the
33   algebraic solvers, time integrators, and optimization algorithms.
34 
35   Collective
36 
37   Input Parameter:
38 . comm - The communicator for the `DM` object
39 
40   Output Parameter:
41 . dm - The `DM` object
42 
43   Level: beginner
44 
45   Notes:
46   See `DMType` for a brief summary of available `DM`.
47 
48   The type must then be set with `DMSetType()`. If you never call `DMSetType()` it will generate an
49   error when you try to use the dm.
50 
51 .seealso: [](ch_dmbase), `DM`, `DMSetType()`, `DMType`, `DMDACreate()`, `DMDA`, `DMSLICED`, `DMCOMPOSITE`, `DMPLEX`, `DMMOAB`, `DMNETWORK`
52 @*/
53 PetscErrorCode DMCreate(MPI_Comm comm, DM *dm)
54 {
55   DM      v;
56   PetscDS ds;
57 
58   PetscFunctionBegin;
59   PetscAssertPointer(dm, 2);
60   *dm = NULL;
61   PetscCall(DMInitializePackage());
62 
63   PetscCall(PetscHeaderCreate(v, DM_CLASSID, "DM", "Distribution Manager", "DM", comm, DMDestroy, DMView));
64 
65   ((PetscObject)v)->non_cyclic_references = &DMCountNonCyclicReferences;
66 
67   v->setupcalled          = PETSC_FALSE;
68   v->setfromoptionscalled = PETSC_FALSE;
69   v->ltogmap              = NULL;
70   v->bind_below           = 0;
71   v->bs                   = 1;
72   v->coloringtype         = IS_COLORING_GLOBAL;
73   PetscCall(PetscSFCreate(comm, &v->sf));
74   PetscCall(PetscSFCreate(comm, &v->sectionSF));
75   v->labels                    = NULL;
76   v->adjacency[0]              = PETSC_FALSE;
77   v->adjacency[1]              = PETSC_TRUE;
78   v->depthLabel                = NULL;
79   v->celltypeLabel             = NULL;
80   v->localSection              = NULL;
81   v->globalSection             = NULL;
82   v->defaultConstraint.section = NULL;
83   v->defaultConstraint.mat     = NULL;
84   v->defaultConstraint.bias    = NULL;
85   v->coordinates[0].dim        = PETSC_DEFAULT;
86   v->coordinates[1].dim        = PETSC_DEFAULT;
87   v->sparseLocalize            = PETSC_TRUE;
88   v->dim                       = PETSC_DETERMINE;
89   {
90     PetscInt i;
91     for (i = 0; i < 10; ++i) {
92       v->nullspaceConstructors[i]     = NULL;
93       v->nearnullspaceConstructors[i] = NULL;
94     }
95   }
96   PetscCall(PetscDSCreate(PETSC_COMM_SELF, &ds));
97   PetscCall(DMSetRegionDS(v, NULL, NULL, ds, NULL));
98   PetscCall(PetscDSDestroy(&ds));
99   PetscCall(PetscHMapAuxCreate(&v->auxData));
100   v->dmBC              = NULL;
101   v->coarseMesh        = NULL;
102   v->outputSequenceNum = -1;
103   v->outputSequenceVal = 0.0;
104   PetscCall(DMSetVecType(v, VECSTANDARD));
105   PetscCall(DMSetMatType(v, MATAIJ));
106 
107   *dm = v;
108   PetscFunctionReturn(PETSC_SUCCESS);
109 }
110 
111 /*@
112   DMClone - Creates a `DM` object with the same topology as the original.
113 
114   Collective
115 
116   Input Parameter:
117 . dm - The original `DM` object
118 
119   Output Parameter:
120 . newdm - The new `DM` object
121 
122   Level: beginner
123 
124   Notes:
125   For some `DM` implementations this is a shallow clone, the result of which may share (reference counted) information with its parent. For example,
126   `DMClone()` applied to a `DMPLEX` object will result in a new `DMPLEX` that shares the topology with the original `DMPLEX`. It does not
127   share the `PetscSection` of the original `DM`.
128 
129   The clone is considered set up if the original has been set up.
130 
131   Use `DMConvert()` for a general way to create new `DM` from a given `DM`
132 
133 .seealso: [](ch_dmbase), `DM`, `DMDestroy()`, `DMCreate()`, `DMSetType()`, `DMSetLocalSection()`, `DMSetGlobalSection()`, `DMPLEX`, `DMConvert()`
134 @*/
135 PetscErrorCode DMClone(DM dm, DM *newdm)
136 {
137   PetscSF              sf;
138   Vec                  coords;
139   void                *ctx;
140   MatOrderingType      otype;
141   DMReorderDefaultFlag flg;
142   PetscInt             dim, cdim, i;
143 
144   PetscFunctionBegin;
145   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
146   PetscAssertPointer(newdm, 2);
147   PetscCall(DMCreate(PetscObjectComm((PetscObject)dm), newdm));
148   PetscCall(DMCopyLabels(dm, *newdm, PETSC_COPY_VALUES, PETSC_TRUE, DM_COPY_LABELS_FAIL));
149   (*newdm)->leveldown     = dm->leveldown;
150   (*newdm)->levelup       = dm->levelup;
151   (*newdm)->prealloc_only = dm->prealloc_only;
152   (*newdm)->prealloc_skip = dm->prealloc_skip;
153   PetscCall(PetscFree((*newdm)->vectype));
154   PetscCall(PetscStrallocpy(dm->vectype, (char **)&(*newdm)->vectype));
155   PetscCall(PetscFree((*newdm)->mattype));
156   PetscCall(PetscStrallocpy(dm->mattype, (char **)&(*newdm)->mattype));
157   PetscCall(DMGetDimension(dm, &dim));
158   PetscCall(DMSetDimension(*newdm, dim));
159   PetscTryTypeMethod(dm, clone, newdm);
160   (*newdm)->setupcalled = dm->setupcalled;
161   PetscCall(DMGetPointSF(dm, &sf));
162   PetscCall(DMSetPointSF(*newdm, sf));
163   PetscCall(DMGetApplicationContext(dm, &ctx));
164   PetscCall(DMSetApplicationContext(*newdm, ctx));
165   PetscCall(DMReorderSectionGetDefault(dm, &flg));
166   PetscCall(DMReorderSectionSetDefault(*newdm, flg));
167   PetscCall(DMReorderSectionGetType(dm, &otype));
168   PetscCall(DMReorderSectionSetType(*newdm, otype));
169   for (i = 0; i < 2; ++i) {
170     if (dm->coordinates[i].dm) {
171       DM           ncdm;
172       PetscSection cs;
173       PetscInt     pEnd = -1, pEndMax = -1;
174 
175       PetscCall(DMGetLocalSection(dm->coordinates[i].dm, &cs));
176       if (cs) PetscCall(PetscSectionGetChart(cs, NULL, &pEnd));
177       PetscCall(MPIU_Allreduce(&pEnd, &pEndMax, 1, MPIU_INT, MPI_MAX, PetscObjectComm((PetscObject)dm)));
178       if (pEndMax >= 0) {
179         PetscCall(DMClone(dm->coordinates[i].dm, &ncdm));
180         PetscCall(DMCopyDisc(dm->coordinates[i].dm, ncdm));
181         PetscCall(DMSetLocalSection(ncdm, cs));
182         if (i) PetscCall(DMSetCellCoordinateDM(*newdm, ncdm));
183         else PetscCall(DMSetCoordinateDM(*newdm, ncdm));
184         PetscCall(DMDestroy(&ncdm));
185       }
186     }
187   }
188   PetscCall(DMGetCoordinateDim(dm, &cdim));
189   PetscCall(DMSetCoordinateDim(*newdm, cdim));
190   PetscCall(DMGetCoordinatesLocal(dm, &coords));
191   if (coords) {
192     PetscCall(DMSetCoordinatesLocal(*newdm, coords));
193   } else {
194     PetscCall(DMGetCoordinates(dm, &coords));
195     if (coords) PetscCall(DMSetCoordinates(*newdm, coords));
196   }
197   PetscCall(DMGetCellCoordinatesLocal(dm, &coords));
198   if (coords) {
199     PetscCall(DMSetCellCoordinatesLocal(*newdm, coords));
200   } else {
201     PetscCall(DMGetCellCoordinates(dm, &coords));
202     if (coords) PetscCall(DMSetCellCoordinates(*newdm, coords));
203   }
204   {
205     const PetscReal *maxCell, *Lstart, *L;
206 
207     PetscCall(DMGetPeriodicity(dm, &maxCell, &Lstart, &L));
208     PetscCall(DMSetPeriodicity(*newdm, maxCell, Lstart, L));
209   }
210   {
211     PetscBool useCone, useClosure;
212 
213     PetscCall(DMGetAdjacency(dm, PETSC_DEFAULT, &useCone, &useClosure));
214     PetscCall(DMSetAdjacency(*newdm, PETSC_DEFAULT, useCone, useClosure));
215   }
216   PetscFunctionReturn(PETSC_SUCCESS);
217 }
218 
219 /*@C
220   DMSetVecType - Sets the type of vector created with `DMCreateLocalVector()` and `DMCreateGlobalVector()`
221 
222   Logically Collective
223 
224   Input Parameters:
225 + dm    - initial distributed array
226 - ctype - the vector type, for example `VECSTANDARD`, `VECCUDA`, or `VECVIENNACL`
227 
228   Options Database Key:
229 . -dm_vec_type ctype - the type of vector to create
230 
231   Level: intermediate
232 
233 .seealso: [](ch_dmbase), `DM`, `DMCreate()`, `DMDestroy()`, `DMDAInterpolationType`, `VecType`, `DMGetVecType()`, `DMSetMatType()`, `DMGetMatType()`,
234           `VECSTANDARD`, `VECCUDA`, `VECVIENNACL`, `DMCreateLocalVector()`, `DMCreateGlobalVector()`
235 @*/
236 PetscErrorCode DMSetVecType(DM dm, VecType ctype)
237 {
238   char *tmp;
239 
240   PetscFunctionBegin;
241   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
242   PetscAssertPointer(ctype, 2);
243   tmp = (char *)dm->vectype;
244   PetscCall(PetscStrallocpy(ctype, (char **)&dm->vectype));
245   PetscCall(PetscFree(tmp));
246   PetscFunctionReturn(PETSC_SUCCESS);
247 }
248 
249 /*@C
250   DMGetVecType - Gets the type of vector created with `DMCreateLocalVector()` and `DMCreateGlobalVector()`
251 
252   Logically Collective
253 
254   Input Parameter:
255 . da - initial distributed array
256 
257   Output Parameter:
258 . ctype - the vector type
259 
260   Level: intermediate
261 
262 .seealso: [](ch_dmbase), `DM`, `DMCreate()`, `DMDestroy()`, `DMDAInterpolationType`, `VecType`, `DMSetMatType()`, `DMGetMatType()`, `DMSetVecType()`
263 @*/
264 PetscErrorCode DMGetVecType(DM da, VecType *ctype)
265 {
266   PetscFunctionBegin;
267   PetscValidHeaderSpecific(da, DM_CLASSID, 1);
268   *ctype = da->vectype;
269   PetscFunctionReturn(PETSC_SUCCESS);
270 }
271 
272 /*@
273   VecGetDM - Gets the `DM` defining the data layout of the vector
274 
275   Not Collective
276 
277   Input Parameter:
278 . v - The `Vec`
279 
280   Output Parameter:
281 . dm - The `DM`
282 
283   Level: intermediate
284 
285   Note:
286   A `Vec` may not have a `DM` associated with it.
287 
288 .seealso: [](ch_dmbase), `DM`, `VecSetDM()`, `DMGetLocalVector()`, `DMGetGlobalVector()`, `DMSetVecType()`
289 @*/
290 PetscErrorCode VecGetDM(Vec v, DM *dm)
291 {
292   PetscFunctionBegin;
293   PetscValidHeaderSpecific(v, VEC_CLASSID, 1);
294   PetscAssertPointer(dm, 2);
295   PetscCall(PetscObjectQuery((PetscObject)v, "__PETSc_dm", (PetscObject *)dm));
296   PetscFunctionReturn(PETSC_SUCCESS);
297 }
298 
299 /*@
300   VecSetDM - Sets the `DM` defining the data layout of the vector.
301 
302   Not Collective
303 
304   Input Parameters:
305 + v  - The `Vec`
306 - dm - The `DM`
307 
308   Level: developer
309 
310   Note:
311   This is rarely used, generally one uses `DMGetLocalVector()` or  `DMGetGlobalVector()` to create a vector associated with a given `DM`
312 
313   This is NOT the same as `DMCreateGlobalVector()` since it does not change the view methods or perform other customization, but merely sets the `DM` member.
314 
315 .seealso: [](ch_dmbase), `DM`, `VecGetDM()`, `DMGetLocalVector()`, `DMGetGlobalVector()`, `DMSetVecType()`
316 @*/
317 PetscErrorCode VecSetDM(Vec v, DM dm)
318 {
319   PetscFunctionBegin;
320   PetscValidHeaderSpecific(v, VEC_CLASSID, 1);
321   if (dm) PetscValidHeaderSpecific(dm, DM_CLASSID, 2);
322   PetscCall(PetscObjectCompose((PetscObject)v, "__PETSc_dm", (PetscObject)dm));
323   PetscFunctionReturn(PETSC_SUCCESS);
324 }
325 
326 /*@C
327   DMSetISColoringType - Sets the type of coloring, `IS_COLORING_GLOBAL` or `IS_COLORING_LOCAL` that is created by the `DM`
328 
329   Logically Collective
330 
331   Input Parameters:
332 + dm    - the `DM` context
333 - ctype - the matrix type
334 
335   Options Database Key:
336 . -dm_is_coloring_type - global or local
337 
338   Level: intermediate
339 
340 .seealso: [](ch_dmbase), `DM`, `DMDACreate1d()`, `DMDACreate2d()`, `DMDACreate3d()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMSetMatrixPreallocateOnly()`, `MatType`, `DMGetMatType()`,
341           `DMGetISColoringType()`, `ISColoringType`, `IS_COLORING_GLOBAL`, `IS_COLORING_LOCAL`
342 @*/
343 PetscErrorCode DMSetISColoringType(DM dm, ISColoringType ctype)
344 {
345   PetscFunctionBegin;
346   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
347   dm->coloringtype = ctype;
348   PetscFunctionReturn(PETSC_SUCCESS);
349 }
350 
351 /*@C
352   DMGetISColoringType - Gets the type of coloring, `IS_COLORING_GLOBAL` or `IS_COLORING_LOCAL` that is created by the `DM`
353 
354   Logically Collective
355 
356   Input Parameter:
357 . dm - the `DM` context
358 
359   Output Parameter:
360 . ctype - the matrix type
361 
362   Options Database Key:
363 . -dm_is_coloring_type - global or local
364 
365   Level: intermediate
366 
367 .seealso: [](ch_dmbase), `DM`, `DMDACreate1d()`, `DMDACreate2d()`, `DMDACreate3d()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMSetMatrixPreallocateOnly()`, `MatType`, `DMGetMatType()`,
368           `ISColoringType`, `IS_COLORING_GLOBAL`, `IS_COLORING_LOCAL`
369 @*/
370 PetscErrorCode DMGetISColoringType(DM dm, ISColoringType *ctype)
371 {
372   PetscFunctionBegin;
373   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
374   *ctype = dm->coloringtype;
375   PetscFunctionReturn(PETSC_SUCCESS);
376 }
377 
378 /*@C
379   DMSetMatType - Sets the type of matrix created with `DMCreateMatrix()`
380 
381   Logically Collective
382 
383   Input Parameters:
384 + dm    - the `DM` context
385 - ctype - the matrix type, for example `MATMPIAIJ`
386 
387   Options Database Key:
388 . -dm_mat_type ctype - the type of the matrix to create, for example mpiaij
389 
390   Level: intermediate
391 
392 .seealso: [](ch_dmbase), `DM`, `MatType`, `DMDACreate1d()`, `DMDACreate2d()`, `DMDACreate3d()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMSetMatrixPreallocateOnly()`, `DMGetMatType()`, `DMCreateGlobalVector()`, `DMCreateLocalVector()`
393 @*/
394 PetscErrorCode DMSetMatType(DM dm, MatType ctype)
395 {
396   char *tmp;
397 
398   PetscFunctionBegin;
399   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
400   PetscAssertPointer(ctype, 2);
401   tmp = (char *)dm->mattype;
402   PetscCall(PetscStrallocpy(ctype, (char **)&dm->mattype));
403   PetscCall(PetscFree(tmp));
404   PetscFunctionReturn(PETSC_SUCCESS);
405 }
406 
407 /*@C
408   DMGetMatType - Gets the type of matrix that would be created with `DMCreateMatrix()`
409 
410   Logically Collective
411 
412   Input Parameter:
413 . dm - the `DM` context
414 
415   Output Parameter:
416 . ctype - the matrix type
417 
418   Level: intermediate
419 
420 .seealso: [](ch_dmbase), `DM`, `DMDACreate1d()`, `DMDACreate2d()`, `DMDACreate3d()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMSetMatrixPreallocateOnly()`, `MatType`, `DMSetMatType()`
421 @*/
422 PetscErrorCode DMGetMatType(DM dm, MatType *ctype)
423 {
424   PetscFunctionBegin;
425   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
426   *ctype = dm->mattype;
427   PetscFunctionReturn(PETSC_SUCCESS);
428 }
429 
430 /*@
431   MatGetDM - Gets the `DM` defining the data layout of the matrix
432 
433   Not Collective
434 
435   Input Parameter:
436 . A - The `Mat`
437 
438   Output Parameter:
439 . dm - The `DM`
440 
441   Level: intermediate
442 
443   Note:
444   A matrix may not have a `DM` associated with it
445 
446   Developer Notes:
447   Since the `Mat` class doesn't know about the `DM` class the `DM` object is associated with the `Mat` through a `PetscObjectCompose()` operation
448 
449 .seealso: [](ch_dmbase), `DM`, `MatSetDM()`, `DMCreateMatrix()`, `DMSetMatType()`
450 @*/
451 PetscErrorCode MatGetDM(Mat A, DM *dm)
452 {
453   PetscFunctionBegin;
454   PetscValidHeaderSpecific(A, MAT_CLASSID, 1);
455   PetscAssertPointer(dm, 2);
456   PetscCall(PetscObjectQuery((PetscObject)A, "__PETSc_dm", (PetscObject *)dm));
457   PetscFunctionReturn(PETSC_SUCCESS);
458 }
459 
460 /*@
461   MatSetDM - Sets the `DM` defining the data layout of the matrix
462 
463   Not Collective
464 
465   Input Parameters:
466 + A  - The `Mat`
467 - dm - The `DM`
468 
469   Level: developer
470 
471   Note:
472   This is rarely used in practice, rather `DMCreateMatrix()` is used to create a matrix associated with a particular `DM`
473 
474   Developer Notes:
475   Since the `Mat` class doesn't know about the `DM` class the `DM` object is associated with
476   the `Mat` through a `PetscObjectCompose()` operation
477 
478 .seealso: [](ch_dmbase), `DM`, `MatGetDM()`, `DMCreateMatrix()`, `DMSetMatType()`
479 @*/
480 PetscErrorCode MatSetDM(Mat A, DM dm)
481 {
482   PetscFunctionBegin;
483   PetscValidHeaderSpecific(A, MAT_CLASSID, 1);
484   if (dm) PetscValidHeaderSpecific(dm, DM_CLASSID, 2);
485   PetscCall(PetscObjectCompose((PetscObject)A, "__PETSc_dm", (PetscObject)dm));
486   PetscFunctionReturn(PETSC_SUCCESS);
487 }
488 
489 /*@C
490   DMSetOptionsPrefix - Sets the prefix prepended to all option names when searching through the options database
491 
492   Logically Collective
493 
494   Input Parameters:
495 + dm     - the `DM` context
496 - prefix - the prefix to prepend
497 
498   Level: advanced
499 
500   Note:
501   A hyphen (-) must NOT be given at the beginning of the prefix name.
502   The first character of all runtime options is AUTOMATICALLY the hyphen.
503 
504 .seealso: [](ch_dmbase), `DM`, `PetscObjectSetOptionsPrefix()`, `DMSetFromOptions()`
505 @*/
506 PetscErrorCode DMSetOptionsPrefix(DM dm, const char prefix[])
507 {
508   PetscFunctionBegin;
509   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
510   PetscCall(PetscObjectSetOptionsPrefix((PetscObject)dm, prefix));
511   if (dm->sf) PetscCall(PetscObjectSetOptionsPrefix((PetscObject)dm->sf, prefix));
512   if (dm->sectionSF) PetscCall(PetscObjectSetOptionsPrefix((PetscObject)dm->sectionSF, prefix));
513   PetscFunctionReturn(PETSC_SUCCESS);
514 }
515 
516 /*@C
517   DMAppendOptionsPrefix - Appends an additional string to an already existing prefix used for searching for
518   `DM` options in the options database.
519 
520   Logically Collective
521 
522   Input Parameters:
523 + dm     - the `DM` context
524 - prefix - the string to append to the current prefix
525 
526   Level: advanced
527 
528   Note:
529   If the `DM` does not currently have an options prefix then this value is used alone as the prefix as if `DMSetOptionsPrefix()` had been called.
530   A hyphen (-) must NOT be given at the beginning of the prefix name.
531   The first character of all runtime options is AUTOMATICALLY the hyphen.
532 
533 .seealso: [](ch_dmbase), `DM`, `DMSetOptionsPrefix()`, `DMGetOptionsPrefix()`, `PetscObjectAppendOptionsPrefix()`, `DMSetFromOptions()`
534 @*/
535 PetscErrorCode DMAppendOptionsPrefix(DM dm, const char prefix[])
536 {
537   PetscFunctionBegin;
538   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
539   PetscCall(PetscObjectAppendOptionsPrefix((PetscObject)dm, prefix));
540   PetscFunctionReturn(PETSC_SUCCESS);
541 }
542 
543 /*@C
544   DMGetOptionsPrefix - Gets the prefix used for searching for all
545   DM options in the options database.
546 
547   Not Collective
548 
549   Input Parameter:
550 . dm - the `DM` context
551 
552   Output Parameter:
553 . prefix - pointer to the prefix string used is returned
554 
555   Level: advanced
556 
557   Fortran Notes:
558   Pass in a string 'prefix' of
559   sufficient length to hold the prefix.
560 
561 .seealso: [](ch_dmbase), `DM`, `DMSetOptionsPrefix()`, `DMAppendOptionsPrefix()`, `DMSetFromOptions()`
562 @*/
563 PetscErrorCode DMGetOptionsPrefix(DM dm, const char *prefix[])
564 {
565   PetscFunctionBegin;
566   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
567   PetscCall(PetscObjectGetOptionsPrefix((PetscObject)dm, prefix));
568   PetscFunctionReturn(PETSC_SUCCESS);
569 }
570 
571 static PetscErrorCode DMCountNonCyclicReferences_Internal(DM dm, PetscBool recurseCoarse, PetscBool recurseFine, PetscInt *ncrefct)
572 {
573   PetscInt refct = ((PetscObject)dm)->refct;
574 
575   PetscFunctionBegin;
576   *ncrefct = 0;
577   if (dm->coarseMesh && dm->coarseMesh->fineMesh == dm) {
578     refct--;
579     if (recurseCoarse) {
580       PetscInt coarseCount;
581 
582       PetscCall(DMCountNonCyclicReferences_Internal(dm->coarseMesh, PETSC_TRUE, PETSC_FALSE, &coarseCount));
583       refct += coarseCount;
584     }
585   }
586   if (dm->fineMesh && dm->fineMesh->coarseMesh == dm) {
587     refct--;
588     if (recurseFine) {
589       PetscInt fineCount;
590 
591       PetscCall(DMCountNonCyclicReferences_Internal(dm->fineMesh, PETSC_FALSE, PETSC_TRUE, &fineCount));
592       refct += fineCount;
593     }
594   }
595   *ncrefct = refct;
596   PetscFunctionReturn(PETSC_SUCCESS);
597 }
598 
599 /* Generic wrapper for DMCountNonCyclicReferences_Internal() */
600 PetscErrorCode DMCountNonCyclicReferences(PetscObject dm, PetscInt *ncrefct)
601 {
602   PetscFunctionBegin;
603   PetscCall(DMCountNonCyclicReferences_Internal((DM)dm, PETSC_TRUE, PETSC_TRUE, ncrefct));
604   PetscFunctionReturn(PETSC_SUCCESS);
605 }
606 
607 PetscErrorCode DMDestroyLabelLinkList_Internal(DM dm)
608 {
609   DMLabelLink next = dm->labels;
610 
611   PetscFunctionBegin;
612   /* destroy the labels */
613   while (next) {
614     DMLabelLink tmp = next->next;
615 
616     if (next->label == dm->depthLabel) dm->depthLabel = NULL;
617     if (next->label == dm->celltypeLabel) dm->celltypeLabel = NULL;
618     PetscCall(DMLabelDestroy(&next->label));
619     PetscCall(PetscFree(next));
620     next = tmp;
621   }
622   dm->labels = NULL;
623   PetscFunctionReturn(PETSC_SUCCESS);
624 }
625 
626 static PetscErrorCode DMDestroyCoordinates_Private(DMCoordinates *c)
627 {
628   PetscFunctionBegin;
629   c->dim = PETSC_DEFAULT;
630   PetscCall(DMDestroy(&c->dm));
631   PetscCall(VecDestroy(&c->x));
632   PetscCall(VecDestroy(&c->xl));
633   PetscCall(DMFieldDestroy(&c->field));
634   PetscFunctionReturn(PETSC_SUCCESS);
635 }
636 
637 /*@C
638   DMDestroy - Destroys a `DM`.
639 
640   Collective
641 
642   Input Parameter:
643 . dm - the `DM` object to destroy
644 
645   Level: developer
646 
647 .seealso: [](ch_dmbase), `DM`, `DMCreate()`, `DMType`, `DMSetType()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`
648 @*/
649 PetscErrorCode DMDestroy(DM *dm)
650 {
651   PetscInt cnt;
652 
653   PetscFunctionBegin;
654   if (!*dm) PetscFunctionReturn(PETSC_SUCCESS);
655   PetscValidHeaderSpecific(*dm, DM_CLASSID, 1);
656 
657   /* count all non-cyclic references in the doubly-linked list of coarse<->fine meshes */
658   PetscCall(DMCountNonCyclicReferences_Internal(*dm, PETSC_TRUE, PETSC_TRUE, &cnt));
659   --((PetscObject)*dm)->refct;
660   if (--cnt > 0) {
661     *dm = NULL;
662     PetscFunctionReturn(PETSC_SUCCESS);
663   }
664   if (((PetscObject)*dm)->refct < 0) PetscFunctionReturn(PETSC_SUCCESS);
665   ((PetscObject)*dm)->refct = 0;
666 
667   PetscCall(DMClearGlobalVectors(*dm));
668   PetscCall(DMClearLocalVectors(*dm));
669   PetscCall(DMClearNamedGlobalVectors(*dm));
670   PetscCall(DMClearNamedLocalVectors(*dm));
671 
672   /* Destroy the list of hooks */
673   {
674     DMCoarsenHookLink link, next;
675     for (link = (*dm)->coarsenhook; link; link = next) {
676       next = link->next;
677       PetscCall(PetscFree(link));
678     }
679     (*dm)->coarsenhook = NULL;
680   }
681   {
682     DMRefineHookLink link, next;
683     for (link = (*dm)->refinehook; link; link = next) {
684       next = link->next;
685       PetscCall(PetscFree(link));
686     }
687     (*dm)->refinehook = NULL;
688   }
689   {
690     DMSubDomainHookLink link, next;
691     for (link = (*dm)->subdomainhook; link; link = next) {
692       next = link->next;
693       PetscCall(PetscFree(link));
694     }
695     (*dm)->subdomainhook = NULL;
696   }
697   {
698     DMGlobalToLocalHookLink link, next;
699     for (link = (*dm)->gtolhook; link; link = next) {
700       next = link->next;
701       PetscCall(PetscFree(link));
702     }
703     (*dm)->gtolhook = NULL;
704   }
705   {
706     DMLocalToGlobalHookLink link, next;
707     for (link = (*dm)->ltoghook; link; link = next) {
708       next = link->next;
709       PetscCall(PetscFree(link));
710     }
711     (*dm)->ltoghook = NULL;
712   }
713   /* Destroy the work arrays */
714   {
715     DMWorkLink link, next;
716     PetscCheck(!(*dm)->workout, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Work array still checked out %p %p", (void *)(*dm)->workout, (void *)(*dm)->workout->mem);
717     for (link = (*dm)->workin; link; link = next) {
718       next = link->next;
719       PetscCall(PetscFree(link->mem));
720       PetscCall(PetscFree(link));
721     }
722     (*dm)->workin = NULL;
723   }
724   /* destroy the labels */
725   PetscCall(DMDestroyLabelLinkList_Internal(*dm));
726   /* destroy the fields */
727   PetscCall(DMClearFields(*dm));
728   /* destroy the boundaries */
729   {
730     DMBoundary next = (*dm)->boundary;
731     while (next) {
732       DMBoundary b = next;
733 
734       next = b->next;
735       PetscCall(PetscFree(b));
736     }
737   }
738 
739   PetscCall(PetscObjectDestroy(&(*dm)->dmksp));
740   PetscCall(PetscObjectDestroy(&(*dm)->dmsnes));
741   PetscCall(PetscObjectDestroy(&(*dm)->dmts));
742 
743   if ((*dm)->ctx && (*dm)->ctxdestroy) PetscCall((*(*dm)->ctxdestroy)(&(*dm)->ctx));
744   PetscCall(MatFDColoringDestroy(&(*dm)->fd));
745   PetscCall(ISLocalToGlobalMappingDestroy(&(*dm)->ltogmap));
746   PetscCall(PetscFree((*dm)->vectype));
747   PetscCall(PetscFree((*dm)->mattype));
748 
749   PetscCall(PetscSectionDestroy(&(*dm)->localSection));
750   PetscCall(PetscSectionDestroy(&(*dm)->globalSection));
751   PetscCall(PetscFree((*dm)->reorderSectionType));
752   PetscCall(PetscLayoutDestroy(&(*dm)->map));
753   PetscCall(PetscSectionDestroy(&(*dm)->defaultConstraint.section));
754   PetscCall(MatDestroy(&(*dm)->defaultConstraint.mat));
755   PetscCall(PetscSFDestroy(&(*dm)->sf));
756   PetscCall(PetscSFDestroy(&(*dm)->sectionSF));
757   if ((*dm)->sfNatural) PetscCall(PetscSFDestroy(&(*dm)->sfNatural));
758   PetscCall(PetscObjectDereference((PetscObject)(*dm)->sfMigration));
759   PetscCall(DMClearAuxiliaryVec(*dm));
760   PetscCall(PetscHMapAuxDestroy(&(*dm)->auxData));
761   if ((*dm)->coarseMesh && (*dm)->coarseMesh->fineMesh == *dm) PetscCall(DMSetFineDM((*dm)->coarseMesh, NULL));
762 
763   PetscCall(DMDestroy(&(*dm)->coarseMesh));
764   if ((*dm)->fineMesh && (*dm)->fineMesh->coarseMesh == *dm) PetscCall(DMSetCoarseDM((*dm)->fineMesh, NULL));
765   PetscCall(DMDestroy(&(*dm)->fineMesh));
766   PetscCall(PetscFree((*dm)->Lstart));
767   PetscCall(PetscFree((*dm)->L));
768   PetscCall(PetscFree((*dm)->maxCell));
769   PetscCall(DMDestroyCoordinates_Private(&(*dm)->coordinates[0]));
770   PetscCall(DMDestroyCoordinates_Private(&(*dm)->coordinates[1]));
771   if ((*dm)->transformDestroy) PetscCall((*(*dm)->transformDestroy)(*dm, (*dm)->transformCtx));
772   PetscCall(DMDestroy(&(*dm)->transformDM));
773   PetscCall(VecDestroy(&(*dm)->transform));
774   PetscCall(VecScatterDestroy(&(*dm)->periodic.affine_to_local));
775   PetscCall(VecDestroy(&(*dm)->periodic.affine));
776 
777   PetscCall(DMClearDS(*dm));
778   PetscCall(DMDestroy(&(*dm)->dmBC));
779   /* if memory was published with SAWs then destroy it */
780   PetscCall(PetscObjectSAWsViewOff((PetscObject)*dm));
781 
782   PetscTryTypeMethod(*dm, destroy);
783   PetscCall(DMMonitorCancel(*dm));
784   PetscCall(DMCeedDestroy(&(*dm)->dmceed));
785 #ifdef PETSC_HAVE_LIBCEED
786   PetscCallCEED(CeedElemRestrictionDestroy(&(*dm)->ceedERestrict));
787   PetscCallCEED(CeedDestroy(&(*dm)->ceed));
788 #endif
789   /* We do not destroy (*dm)->data here so that we can reference count backend objects */
790   PetscCall(PetscHeaderDestroy(dm));
791   PetscFunctionReturn(PETSC_SUCCESS);
792 }
793 
794 /*@
795   DMSetUp - sets up the data structures inside a `DM` object
796 
797   Collective
798 
799   Input Parameter:
800 . dm - the `DM` object to setup
801 
802   Level: intermediate
803 
804   Note:
805   This is usually called after various parameter setting operations and `DMSetFromOptions()` are called on the `DM`
806 
807 .seealso: [](ch_dmbase), `DM`, `DMCreate()`, `DMSetType()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`
808 @*/
809 PetscErrorCode DMSetUp(DM dm)
810 {
811   PetscFunctionBegin;
812   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
813   if (dm->setupcalled) PetscFunctionReturn(PETSC_SUCCESS);
814   PetscTryTypeMethod(dm, setup);
815   dm->setupcalled = PETSC_TRUE;
816   PetscFunctionReturn(PETSC_SUCCESS);
817 }
818 
819 /*@
820   DMSetFromOptions - sets parameters in a `DM` from the options database
821 
822   Collective
823 
824   Input Parameter:
825 . dm - the `DM` object to set options for
826 
827   Options Database Keys:
828 + -dm_preallocate_only                               - Only preallocate the matrix for `DMCreateMatrix()` and `DMCreateMassMatrix()`, but do not fill it with zeros
829 . -dm_vec_type <type>                                - type of vector to create inside `DM`
830 . -dm_mat_type <type>                                - type of matrix to create inside `DM`
831 . -dm_is_coloring_type                               - <global or local>
832 . -dm_bind_below <n>                                 - bind (force execution on CPU) for `Vec` and `Mat` objects with local size (number of vector entries or matrix rows) below n; currently only supported for `DMDA`
833 . -dm_plex_filename <str>                            - File containing a mesh
834 . -dm_plex_boundary_filename <str>                   - File containing a mesh boundary
835 . -dm_plex_name <str>                                - Name of the mesh in the file
836 . -dm_plex_shape <shape>                             - The domain shape, such as `BOX`, `SPHERE`, etc.
837 . -dm_plex_cell <ct>                                 - Cell shape
838 . -dm_plex_reference_cell_domain <bool>              - Use a reference cell domain
839 . -dm_plex_dim <dim>                                 - Set the topological dimension
840 . -dm_plex_simplex <bool>                            - `PETSC_TRUE` for simplex elements, `PETSC_FALSE` for tensor elements
841 . -dm_plex_interpolate <bool>                        - `PETSC_TRUE` turns on topological interpolation (creating edges and faces)
842 . -dm_plex_scale <sc>                                - Scale factor for mesh coordinates
843 . -dm_coord_remap <bool>                             - Map coordinates using a function
844 . -dm_coord_map <mapname>                            - Select a builtin coordinate map
845 . -dm_coord_map_params <p0,p1,p2,...>                - Set coordinate mapping parameters
846 . -dm_plex_box_faces <m,n,p>                         - Number of faces along each dimension
847 . -dm_plex_box_lower <x,y,z>                         - Specify lower-left-bottom coordinates for the box
848 . -dm_plex_box_upper <x,y,z>                         - Specify upper-right-top coordinates for the box
849 . -dm_plex_box_bd <bx,by,bz>                         - Specify the `DMBoundaryType` for each direction
850 . -dm_plex_sphere_radius <r>                         - The sphere radius
851 . -dm_plex_ball_radius <r>                           - Radius of the ball
852 . -dm_plex_cylinder_bd <bz>                          - Boundary type in the z direction
853 . -dm_plex_cylinder_num_wedges <n>                   - Number of wedges around the cylinder
854 . -dm_plex_reorder <order>                           - Reorder the mesh using the specified algorithm
855 . -dm_refine_pre <n>                                 - The number of refinements before distribution
856 . -dm_refine_uniform_pre <bool>                      - Flag for uniform refinement before distribution
857 . -dm_refine_volume_limit_pre <v>                    - The maximum cell volume after refinement before distribution
858 . -dm_refine <n>                                     - The number of refinements after distribution
859 . -dm_extrude <l>                                    - Activate extrusion and specify the number of layers to extrude
860 . -dm_plex_transform_extrude_thickness <t>           - The total thickness of extruded layers
861 . -dm_plex_transform_extrude_use_tensor <bool>       - Use tensor cells when extruding
862 . -dm_plex_transform_extrude_symmetric <bool>        - Extrude layers symmetrically about the surface
863 . -dm_plex_transform_extrude_normal <n0,...,nd>      - Specify the extrusion direction
864 . -dm_plex_transform_extrude_thicknesses <t0,...,tl> - Specify thickness of each layer
865 . -dm_plex_create_fv_ghost_cells                     - Flag to create finite volume ghost cells on the boundary
866 . -dm_plex_fv_ghost_cells_label <name>               - Label name for ghost cells boundary
867 . -dm_distribute <bool>                              - Flag to redistribute a mesh among processes
868 . -dm_distribute_overlap <n>                         - The size of the overlap halo
869 . -dm_plex_adj_cone <bool>                           - Set adjacency direction
870 . -dm_plex_adj_closure <bool>                        - Set adjacency size
871 . -dm_plex_use_ceed <bool>                           - Use LibCEED as the FEM backend
872 . -dm_plex_check_symmetry                            - Check that the adjacency information in the mesh is symmetric - `DMPlexCheckSymmetry()`
873 . -dm_plex_check_skeleton                            - Check that each cell has the correct number of vertices (only for homogeneous simplex or tensor meshes) - `DMPlexCheckSkeleton()`
874 . -dm_plex_check_faces                               - Check that the faces of each cell give a vertex order this is consistent with what we expect from the cell type - `DMPlexCheckFaces()`
875 . -dm_plex_check_geometry                            - Check that cells have positive volume - `DMPlexCheckGeometry()`
876 . -dm_plex_check_pointsf                             - Check some necessary conditions for `PointSF` - `DMPlexCheckPointSF()`
877 . -dm_plex_check_interface_cones                     - Check points on inter-partition interfaces have conforming order of cone points - `DMPlexCheckInterfaceCones()`
878 - -dm_plex_check_all                                 - Perform all the checks above
879 
880   Level: intermediate
881 
882 .seealso: [](ch_dmbase), `DM`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`,
883          `DMPlexCheckSymmetry()`, `DMPlexCheckSkeleton()`, `DMPlexCheckFaces()`, `DMPlexCheckGeometry()`, `DMPlexCheckPointSF()`, `DMPlexCheckInterfaceCones()`,
884          `DMSetOptionsPrefix()`, `DMType`, `DMPLEX`, `DMDA`
885 @*/
886 PetscErrorCode DMSetFromOptions(DM dm)
887 {
888   char      typeName[256];
889   PetscBool flg;
890 
891   PetscFunctionBegin;
892   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
893   dm->setfromoptionscalled = PETSC_TRUE;
894   if (dm->sf) PetscCall(PetscSFSetFromOptions(dm->sf));
895   if (dm->sectionSF) PetscCall(PetscSFSetFromOptions(dm->sectionSF));
896   if (dm->coordinates[0].dm) PetscCall(DMSetFromOptions(dm->coordinates[0].dm));
897   PetscObjectOptionsBegin((PetscObject)dm);
898   PetscCall(PetscOptionsBool("-dm_preallocate_only", "only preallocate matrix, but do not set column indices", "DMSetMatrixPreallocateOnly", dm->prealloc_only, &dm->prealloc_only, NULL));
899   PetscCall(PetscOptionsFList("-dm_vec_type", "Vector type used for created vectors", "DMSetVecType", VecList, dm->vectype, typeName, 256, &flg));
900   if (flg) PetscCall(DMSetVecType(dm, typeName));
901   PetscCall(PetscOptionsFList("-dm_mat_type", "Matrix type used for created matrices", "DMSetMatType", MatList, dm->mattype ? dm->mattype : typeName, typeName, sizeof(typeName), &flg));
902   if (flg) PetscCall(DMSetMatType(dm, typeName));
903   PetscCall(PetscOptionsEnum("-dm_blocking_type", "Topological point or field node blocking", "DMSetBlockingType", DMBlockingTypes, (PetscEnum)dm->blocking_type, (PetscEnum *)&dm->blocking_type, NULL));
904   PetscCall(PetscOptionsEnum("-dm_is_coloring_type", "Global or local coloring of Jacobian", "DMSetISColoringType", ISColoringTypes, (PetscEnum)dm->coloringtype, (PetscEnum *)&dm->coloringtype, NULL));
905   PetscCall(PetscOptionsInt("-dm_bind_below", "Set the size threshold (in entries) below which the Vec is bound to the CPU", "VecBindToCPU", dm->bind_below, &dm->bind_below, &flg));
906   PetscCall(PetscOptionsBool("-dm_ignore_perm_output", "Ignore the local section permutation on output", "DMGetOutputDM", dm->ignorePermOutput, &dm->ignorePermOutput, NULL));
907   PetscTryTypeMethod(dm, setfromoptions, PetscOptionsObject);
908   /* process any options handlers added with PetscObjectAddOptionsHandler() */
909   PetscCall(PetscObjectProcessOptionsHandlers((PetscObject)dm, PetscOptionsObject));
910   PetscOptionsEnd();
911   PetscFunctionReturn(PETSC_SUCCESS);
912 }
913 
914 /*@C
915   DMViewFromOptions - View a `DM` in a particular way based on a request in the options database
916 
917   Collective
918 
919   Input Parameters:
920 + dm   - the `DM` object
921 . obj  - optional object that provides the prefix for the options database (if `NULL` then the prefix in obj is used)
922 - name - option string that is used to activate viewing
923 
924   Level: intermediate
925 
926   Note:
927   See `PetscObjectViewFromOptions()` for a list of values that can be provided in the options database to determine how the `DM` is viewed
928 
929 .seealso: [](ch_dmbase), `DM`, `DMView()`, `PetscObjectViewFromOptions()`, `DMCreate()`
930 @*/
931 PetscErrorCode DMViewFromOptions(DM dm, PetscObject obj, const char name[])
932 {
933   PetscFunctionBegin;
934   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
935   PetscCall(PetscObjectViewFromOptions((PetscObject)dm, obj, name));
936   PetscFunctionReturn(PETSC_SUCCESS);
937 }
938 
939 /*@C
940   DMView - Views a `DM`. Depending on the `PetscViewer` and its `PetscViewerFormat` it may print some ASCII information about the `DM` to the screen or a file or
941   save the `DM` in a binary file to be loaded later or create a visualization of the `DM`
942 
943   Collective
944 
945   Input Parameters:
946 + dm - the `DM` object to view
947 - v  - the viewer
948 
949   Level: beginner
950 
951   Notes:
952   Using `PETSCVIEWERHDF5` type with `PETSC_VIEWER_HDF5_PETSC` as the `PetscViewerFormat` one can save multiple `DMPLEX`
953   meshes in a single HDF5 file. This in turn requires one to name the `DMPLEX` object with `PetscObjectSetName()`
954   before saving it with `DMView()` and before loading it with `DMLoad()` for identification of the mesh object.
955 
956 .seealso: [](ch_dmbase), `DM`, `PetscViewer`, `PetscViewerFormat`, `PetscViewerSetFormat()`, `DMDestroy()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMLoad()`, `PetscObjectSetName()`
957 @*/
958 PetscErrorCode DMView(DM dm, PetscViewer v)
959 {
960   PetscBool         isbinary;
961   PetscMPIInt       size;
962   PetscViewerFormat format;
963 
964   PetscFunctionBegin;
965   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
966   if (!v) PetscCall(PetscViewerASCIIGetStdout(PetscObjectComm((PetscObject)dm), &v));
967   PetscValidHeaderSpecific(v, PETSC_VIEWER_CLASSID, 2);
968   /* Ideally, we would like to have this test on.
969      However, it currently breaks socket viz via GLVis.
970      During DMView(parallel_mesh,glvis_viewer), each
971      process opens a sequential ASCII socket to visualize
972      the local mesh, and PetscObjectView(dm,local_socket)
973      is internally called inside VecView_GLVis, incurring
974      in an error here */
975   /* PetscCheckSameComm(dm,1,v,2); */
976   PetscCall(PetscViewerCheckWritable(v));
977 
978   PetscCall(PetscViewerGetFormat(v, &format));
979   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)dm), &size));
980   if (size == 1 && format == PETSC_VIEWER_LOAD_BALANCE) PetscFunctionReturn(PETSC_SUCCESS);
981   PetscCall(PetscObjectPrintClassNamePrefixType((PetscObject)dm, v));
982   PetscCall(PetscObjectTypeCompare((PetscObject)v, PETSCVIEWERBINARY, &isbinary));
983   if (isbinary) {
984     PetscInt classid = DM_FILE_CLASSID;
985     char     type[256];
986 
987     PetscCall(PetscViewerBinaryWrite(v, &classid, 1, PETSC_INT));
988     PetscCall(PetscStrncpy(type, ((PetscObject)dm)->type_name, sizeof(type)));
989     PetscCall(PetscViewerBinaryWrite(v, type, 256, PETSC_CHAR));
990   }
991   PetscTryTypeMethod(dm, view, v);
992   PetscFunctionReturn(PETSC_SUCCESS);
993 }
994 
995 /*@
996   DMCreateGlobalVector - Creates a global vector from a `DM` object. A global vector is a parallel vector that has no duplicate values shared between MPI ranks,
997   that is it has no ghost locations.
998 
999   Collective
1000 
1001   Input Parameter:
1002 . dm - the `DM` object
1003 
1004   Output Parameter:
1005 . vec - the global vector
1006 
1007   Level: beginner
1008 
1009 .seealso: [](ch_dmbase), `DM`, `Vec`, `DMCreateLocalVector()`, `DMGetGlobalVector()`, `DMDestroy()`, `DMView()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`,
1010          `DMGlobalToLocalBegin()`, `DMGlobalToLocalEnd()`
1011 @*/
1012 PetscErrorCode DMCreateGlobalVector(DM dm, Vec *vec)
1013 {
1014   PetscFunctionBegin;
1015   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
1016   PetscAssertPointer(vec, 2);
1017   PetscUseTypeMethod(dm, createglobalvector, vec);
1018   if (PetscDefined(USE_DEBUG)) {
1019     DM vdm;
1020 
1021     PetscCall(VecGetDM(*vec, &vdm));
1022     PetscCheck(vdm, PETSC_COMM_SELF, PETSC_ERR_PLIB, "DM type '%s' did not attach the DM to the vector", ((PetscObject)dm)->type_name);
1023   }
1024   PetscFunctionReturn(PETSC_SUCCESS);
1025 }
1026 
1027 /*@
1028   DMCreateLocalVector - Creates a local vector from a `DM` object.
1029 
1030   Not Collective
1031 
1032   Input Parameter:
1033 . dm - the `DM` object
1034 
1035   Output Parameter:
1036 . vec - the local vector
1037 
1038   Level: beginner
1039 
1040   Note:
1041   A local vector usually has ghost locations that contain values that are owned by different MPI ranks. A global vector has no ghost locations.
1042 
1043 .seealso: [](ch_dmbase), `DM`, `Vec`, `DMCreateGlobalVector()`, `DMGetLocalVector()`, `DMDestroy()`, `DMView()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`
1044          `DMGlobalToLocalBegin()`, `DMGlobalToLocalEnd()`
1045 @*/
1046 PetscErrorCode DMCreateLocalVector(DM dm, Vec *vec)
1047 {
1048   PetscFunctionBegin;
1049   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
1050   PetscAssertPointer(vec, 2);
1051   PetscUseTypeMethod(dm, createlocalvector, vec);
1052   if (PetscDefined(USE_DEBUG)) {
1053     DM vdm;
1054 
1055     PetscCall(VecGetDM(*vec, &vdm));
1056     PetscCheck(vdm, PETSC_COMM_SELF, PETSC_ERR_LIB, "DM type '%s' did not attach the DM to the vector", ((PetscObject)dm)->type_name);
1057   }
1058   PetscFunctionReturn(PETSC_SUCCESS);
1059 }
1060 
1061 /*@
1062   DMGetLocalToGlobalMapping - Accesses the local-to-global mapping in a `DM`.
1063 
1064   Collective
1065 
1066   Input Parameter:
1067 . dm - the `DM` that provides the mapping
1068 
1069   Output Parameter:
1070 . ltog - the mapping
1071 
1072   Level: advanced
1073 
1074   Notes:
1075   The global to local mapping allows one to set values into the global vector or matrix using `VecSetValuesLocal()` and `MatSetValuesLocal()`
1076 
1077   Vectors obtained with  `DMCreateGlobalVector()` and matrices obtained with `DMCreateMatrix()` already contain the global mapping so you do
1078   need to use this function with those objects.
1079 
1080   This mapping can then be used by `VecSetLocalToGlobalMapping()` or `MatSetLocalToGlobalMapping()`.
1081 
1082 .seealso: [](ch_dmbase), `DM`, `DMCreateLocalVector()`, `DMCreateGlobalVector()`, `VecSetLocalToGlobalMapping()`, `MatSetLocalToGlobalMapping()`,
1083           `DMCreateMatrix()`
1084 @*/
1085 PetscErrorCode DMGetLocalToGlobalMapping(DM dm, ISLocalToGlobalMapping *ltog)
1086 {
1087   PetscInt bs = -1, bsLocal[2], bsMinMax[2];
1088 
1089   PetscFunctionBegin;
1090   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
1091   PetscAssertPointer(ltog, 2);
1092   if (!dm->ltogmap) {
1093     PetscSection section, sectionGlobal;
1094 
1095     PetscCall(DMGetLocalSection(dm, &section));
1096     if (section) {
1097       const PetscInt *cdofs;
1098       PetscInt       *ltog;
1099       PetscInt        pStart, pEnd, n, p, k, l;
1100 
1101       PetscCall(DMGetGlobalSection(dm, &sectionGlobal));
1102       PetscCall(PetscSectionGetChart(section, &pStart, &pEnd));
1103       PetscCall(PetscSectionGetStorageSize(section, &n));
1104       PetscCall(PetscMalloc1(n, &ltog)); /* We want the local+overlap size */
1105       for (p = pStart, l = 0; p < pEnd; ++p) {
1106         PetscInt bdof, cdof, dof, off, c, cind;
1107 
1108         /* Should probably use constrained dofs */
1109         PetscCall(PetscSectionGetDof(section, p, &dof));
1110         PetscCall(PetscSectionGetConstraintDof(section, p, &cdof));
1111         PetscCall(PetscSectionGetConstraintIndices(section, p, &cdofs));
1112         PetscCall(PetscSectionGetOffset(sectionGlobal, p, &off));
1113         /* If you have dofs, and constraints, and they are unequal, we set the blocksize to 1 */
1114         bdof = cdof && (dof - cdof) ? 1 : dof;
1115         if (dof) bs = bs < 0 ? bdof : PetscGCD(bs, bdof);
1116 
1117         for (c = 0, cind = 0; c < dof; ++c, ++l) {
1118           if (cind < cdof && c == cdofs[cind]) {
1119             ltog[l] = off < 0 ? off - c : -(off + c + 1);
1120             cind++;
1121           } else {
1122             ltog[l] = (off < 0 ? -(off + 1) : off) + c - cind;
1123           }
1124         }
1125       }
1126       /* Must have same blocksize on all procs (some might have no points) */
1127       bsLocal[0] = bs < 0 ? PETSC_MAX_INT : bs;
1128       bsLocal[1] = bs;
1129       PetscCall(PetscGlobalMinMaxInt(PetscObjectComm((PetscObject)dm), bsLocal, bsMinMax));
1130       if (bsMinMax[0] != bsMinMax[1]) {
1131         bs = 1;
1132       } else {
1133         bs = bsMinMax[0];
1134       }
1135       bs = bs < 0 ? 1 : bs;
1136       /* Must reduce indices by blocksize */
1137       if (bs > 1) {
1138         for (l = 0, k = 0; l < n; l += bs, ++k) {
1139           // Integer division of negative values truncates toward zero(!), not toward negative infinity
1140           ltog[k] = ltog[l] >= 0 ? ltog[l] / bs : -(-(ltog[l] + 1) / bs + 1);
1141         }
1142         n /= bs;
1143       }
1144       PetscCall(ISLocalToGlobalMappingCreate(PetscObjectComm((PetscObject)dm), bs, n, ltog, PETSC_OWN_POINTER, &dm->ltogmap));
1145     } else PetscUseTypeMethod(dm, getlocaltoglobalmapping);
1146   }
1147   *ltog = dm->ltogmap;
1148   PetscFunctionReturn(PETSC_SUCCESS);
1149 }
1150 
1151 /*@
1152   DMGetBlockSize - Gets the inherent block size associated with a `DM`
1153 
1154   Not Collective
1155 
1156   Input Parameter:
1157 . dm - the `DM` with block structure
1158 
1159   Output Parameter:
1160 . bs - the block size, 1 implies no exploitable block structure
1161 
1162   Level: intermediate
1163 
1164   Note:
1165   This might be the number of degrees of freedom at each grid point for a structured grid.
1166 
1167   Complex `DM` that represent multiphysics or staggered grids or mixed-methods do not generally have a single inherent block size, but
1168   rather different locations in the vectors may have a different block size.
1169 
1170 .seealso: [](ch_dmbase), `DM`, `ISCreateBlock()`, `VecSetBlockSize()`, `MatSetBlockSize()`, `DMGetLocalToGlobalMapping()`
1171 @*/
1172 PetscErrorCode DMGetBlockSize(DM dm, PetscInt *bs)
1173 {
1174   PetscFunctionBegin;
1175   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
1176   PetscAssertPointer(bs, 2);
1177   PetscCheck(dm->bs >= 1, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "DM does not have enough information to provide a block size yet");
1178   *bs = dm->bs;
1179   PetscFunctionReturn(PETSC_SUCCESS);
1180 }
1181 
1182 /*@C
1183   DMCreateInterpolation - Gets the interpolation matrix between two `DM` objects. The resulting matrix map degrees of freedom in the vector obtained by
1184   `DMCreateGlobalVector()` on the coarse `DM` to similar vectors on the fine grid `DM`.
1185 
1186   Collective
1187 
1188   Input Parameters:
1189 + dmc - the `DM` object
1190 - dmf - the second, finer `DM` object
1191 
1192   Output Parameters:
1193 + mat - the interpolation
1194 - vec - the scaling (optional), see `DMCreateInterpolationScale()`
1195 
1196   Level: developer
1197 
1198   Notes:
1199   For `DMDA` objects this only works for "uniform refinement", that is the refined mesh was obtained `DMRefine()` or the coarse mesh was obtained by
1200   DMCoarsen(). The coordinates set into the `DMDA` are completely ignored in computing the interpolation.
1201 
1202   For `DMDA` objects you can use this interpolation (more precisely the interpolation from the `DMGetCoordinateDM()`) to interpolate the mesh coordinate
1203   vectors EXCEPT in the periodic case where it does not make sense since the coordinate vectors are not periodic.
1204 
1205 .seealso: [](ch_dmbase), `DM`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMRefine()`, `DMCoarsen()`, `DMCreateRestriction()`, `DMCreateInterpolationScale()`
1206 @*/
1207 PetscErrorCode DMCreateInterpolation(DM dmc, DM dmf, Mat *mat, Vec *vec)
1208 {
1209   PetscFunctionBegin;
1210   PetscValidHeaderSpecific(dmc, DM_CLASSID, 1);
1211   PetscValidHeaderSpecific(dmf, DM_CLASSID, 2);
1212   PetscAssertPointer(mat, 3);
1213   PetscCall(PetscLogEventBegin(DM_CreateInterpolation, dmc, dmf, 0, 0));
1214   PetscUseTypeMethod(dmc, createinterpolation, dmf, mat, vec);
1215   PetscCall(PetscLogEventEnd(DM_CreateInterpolation, dmc, dmf, 0, 0));
1216   PetscFunctionReturn(PETSC_SUCCESS);
1217 }
1218 
1219 /*@
1220   DMCreateInterpolationScale - Forms L = 1/(R*1) where 1 is the vector of all ones, and R is
1221   the transpose of the interpolation between the `DM`.
1222 
1223   Input Parameters:
1224 + dac - `DM` that defines a coarse mesh
1225 . daf - `DM` that defines a fine mesh
1226 - mat - the restriction (or interpolation operator) from fine to coarse
1227 
1228   Output Parameter:
1229 . scale - the scaled vector
1230 
1231   Level: advanced
1232 
1233   Notes:
1234   xcoarse = diag(L)*R*xfine preserves scale and is thus suitable for state (versus residual)
1235   restriction. In other words xcoarse is the coarse representation of xfine.
1236 
1237   Developer Notes:
1238   If the fine-scale `DMDA` has the -dm_bind_below option set to true, then `DMCreateInterpolationScale()` calls `MatSetBindingPropagates()`
1239   on the restriction/interpolation operator to set the bindingpropagates flag to true.
1240 
1241 .seealso: [](ch_dmbase), `DM`, `MatRestrict()`, `MatInterpolate()`, `DMCreateInterpolation()`, `DMCreateRestriction()`, `DMCreateGlobalVector()`
1242 @*/
1243 PetscErrorCode DMCreateInterpolationScale(DM dac, DM daf, Mat mat, Vec *scale)
1244 {
1245   Vec         fine;
1246   PetscScalar one = 1.0;
1247 #if defined(PETSC_HAVE_CUDA)
1248   PetscBool bindingpropagates, isbound;
1249 #endif
1250 
1251   PetscFunctionBegin;
1252   PetscCall(DMCreateGlobalVector(daf, &fine));
1253   PetscCall(DMCreateGlobalVector(dac, scale));
1254   PetscCall(VecSet(fine, one));
1255 #if defined(PETSC_HAVE_CUDA)
1256   /* If the 'fine' Vec is bound to the CPU, it makes sense to bind 'mat' as well.
1257    * Note that we only do this for the CUDA case, right now, but if we add support for MatMultTranspose() via ViennaCL,
1258    * we'll need to do it for that case, too.*/
1259   PetscCall(VecGetBindingPropagates(fine, &bindingpropagates));
1260   if (bindingpropagates) {
1261     PetscCall(MatSetBindingPropagates(mat, PETSC_TRUE));
1262     PetscCall(VecBoundToCPU(fine, &isbound));
1263     PetscCall(MatBindToCPU(mat, isbound));
1264   }
1265 #endif
1266   PetscCall(MatRestrict(mat, fine, *scale));
1267   PetscCall(VecDestroy(&fine));
1268   PetscCall(VecReciprocal(*scale));
1269   PetscFunctionReturn(PETSC_SUCCESS);
1270 }
1271 
1272 /*@
1273   DMCreateRestriction - Gets restriction matrix between two `DM` objects. The resulting matrix map degrees of freedom in the vector obtained by
1274   `DMCreateGlobalVector()` on the fine `DM` to similar vectors on the coarse grid `DM`.
1275 
1276   Collective
1277 
1278   Input Parameters:
1279 + dmc - the `DM` object
1280 - dmf - the second, finer `DM` object
1281 
1282   Output Parameter:
1283 . mat - the restriction
1284 
1285   Level: developer
1286 
1287   Note:
1288   This only works for `DMSTAG`. For many situations either the transpose of the operator obtained with `DMCreateInterpolation()` or that
1289   matrix multiplied by the vector obtained with `DMCreateInterpolationScale()` provides the desired object.
1290 
1291 .seealso: [](ch_dmbase), `DM`, `DMRestrict()`, `DMInterpolate()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMRefine()`, `DMCoarsen()`, `DMCreateInterpolation()`
1292 @*/
1293 PetscErrorCode DMCreateRestriction(DM dmc, DM dmf, Mat *mat)
1294 {
1295   PetscFunctionBegin;
1296   PetscValidHeaderSpecific(dmc, DM_CLASSID, 1);
1297   PetscValidHeaderSpecific(dmf, DM_CLASSID, 2);
1298   PetscAssertPointer(mat, 3);
1299   PetscCall(PetscLogEventBegin(DM_CreateRestriction, dmc, dmf, 0, 0));
1300   PetscUseTypeMethod(dmc, createrestriction, dmf, mat);
1301   PetscCall(PetscLogEventEnd(DM_CreateRestriction, dmc, dmf, 0, 0));
1302   PetscFunctionReturn(PETSC_SUCCESS);
1303 }
1304 
1305 /*@
1306   DMCreateInjection - Gets injection matrix between two `DM` objects.
1307 
1308   Collective
1309 
1310   Input Parameters:
1311 + dac - the `DM` object
1312 - daf - the second, finer `DM` object
1313 
1314   Output Parameter:
1315 . mat - the injection
1316 
1317   Level: developer
1318 
1319   Notes:
1320   This is an operator that applied to a vector obtained with `DMCreateGlobalVector()` on the
1321   fine grid maps the values to a vector on the vector on the coarse `DM` by simply selecting
1322   the values on the coarse grid points. This compares to the operator obtained by
1323   `DMCreateRestriction()` or the transpose of the operator obtained by
1324   `DMCreateInterpolation()` that uses a "local weighted average" of the values around the
1325   coarse grid point as the coarse grid value.
1326 
1327   For `DMDA` objects this only works for "uniform refinement", that is the refined mesh was obtained `DMRefine()` or the coarse mesh was obtained by
1328   `DMCoarsen()`. The coordinates set into the `DMDA` are completely ignored in computing the injection.
1329 
1330 .seealso: [](ch_dmbase), `DM`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMCreateInterpolation()`,
1331           `DMCreateRestriction()`, `MatRestrict()`, `MatInterpolate()`
1332 @*/
1333 PetscErrorCode DMCreateInjection(DM dac, DM daf, Mat *mat)
1334 {
1335   PetscFunctionBegin;
1336   PetscValidHeaderSpecific(dac, DM_CLASSID, 1);
1337   PetscValidHeaderSpecific(daf, DM_CLASSID, 2);
1338   PetscAssertPointer(mat, 3);
1339   PetscCall(PetscLogEventBegin(DM_CreateInjection, dac, daf, 0, 0));
1340   PetscUseTypeMethod(dac, createinjection, daf, mat);
1341   PetscCall(PetscLogEventEnd(DM_CreateInjection, dac, daf, 0, 0));
1342   PetscFunctionReturn(PETSC_SUCCESS);
1343 }
1344 
1345 /*@
1346   DMCreateMassMatrix - Gets the mass matrix between two `DM` objects, M_ij = \int \phi_i \psi_j where the \phi are Galerkin basis functions for a
1347   a Galerkin finite element model on the `DM`
1348 
1349   Collective
1350 
1351   Input Parameters:
1352 + dmc - the target `DM` object
1353 - dmf - the source `DM` object
1354 
1355   Output Parameter:
1356 . mat - the mass matrix
1357 
1358   Level: developer
1359 
1360   Notes:
1361   For `DMPLEX` the finite element model for the `DM` must have been already provided.
1362 
1363   if `dmc` is `dmf` then x^t M x is an approximation to the L2 norm of the vector x which is obtained by `DMCreateGlobalVector()`
1364 
1365 .seealso: [](ch_dmbase), `DM`, `DMCreateMassMatrixLumped()`, `DMCreateMatrix()`, `DMRefine()`, `DMCoarsen()`, `DMCreateRestriction()`, `DMCreateInterpolation()`, `DMCreateInjection()`
1366 @*/
1367 PetscErrorCode DMCreateMassMatrix(DM dmc, DM dmf, Mat *mat)
1368 {
1369   PetscFunctionBegin;
1370   PetscValidHeaderSpecific(dmc, DM_CLASSID, 1);
1371   PetscValidHeaderSpecific(dmf, DM_CLASSID, 2);
1372   PetscAssertPointer(mat, 3);
1373   PetscCall(PetscLogEventBegin(DM_CreateMassMatrix, 0, 0, 0, 0));
1374   PetscUseTypeMethod(dmc, createmassmatrix, dmf, mat);
1375   PetscCall(PetscLogEventEnd(DM_CreateMassMatrix, 0, 0, 0, 0));
1376   PetscFunctionReturn(PETSC_SUCCESS);
1377 }
1378 
1379 /*@
1380   DMCreateMassMatrixLumped - Gets the lumped mass matrix for a given `DM`
1381 
1382   Collective
1383 
1384   Input Parameter:
1385 . dm - the `DM` object
1386 
1387   Output Parameter:
1388 . lm - the lumped mass matrix, which is a diagonal matrix, represented as a vector
1389 
1390   Level: developer
1391 
1392   Note:
1393   See `DMCreateMassMatrix()` for how to create the non-lumped version of the mass matrix.
1394 
1395 .seealso: [](ch_dmbase), `DM`, `DMCreateMassMatrix()`, `DMCreateMatrix()`, `DMRefine()`, `DMCoarsen()`, `DMCreateRestriction()`, `DMCreateInterpolation()`, `DMCreateInjection()`
1396 @*/
1397 PetscErrorCode DMCreateMassMatrixLumped(DM dm, Vec *lm)
1398 {
1399   PetscFunctionBegin;
1400   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
1401   PetscAssertPointer(lm, 2);
1402   PetscUseTypeMethod(dm, createmassmatrixlumped, lm);
1403   PetscFunctionReturn(PETSC_SUCCESS);
1404 }
1405 
1406 /*@
1407   DMCreateColoring - Gets coloring of a graph associated with the `DM`. Often the graph represents the operator matrix associated with the discretization
1408   of a PDE on the `DM`.
1409 
1410   Collective
1411 
1412   Input Parameters:
1413 + dm    - the `DM` object
1414 - ctype - `IS_COLORING_LOCAL` or `IS_COLORING_GLOBAL`
1415 
1416   Output Parameter:
1417 . coloring - the coloring
1418 
1419   Level: developer
1420 
1421   Notes:
1422   Coloring of matrices can also be computed directly from the sparse matrix nonzero structure via the `MatColoring` object or from the mesh from which the
1423   matrix comes from (what this function provides). In general using the mesh produces a more optimal coloring (fewer colors).
1424 
1425   This produces a coloring with the distance of 2, see `MatSetColoringDistance()` which can be used for efficiently computing Jacobians with `MatFDColoringCreate()`
1426   For `DMDA` in three dimensions with periodic boundary conditions the number of grid points in each dimension must be divisible by 2*stencil_width + 1,
1427   otherwise an error will be generated.
1428 
1429 .seealso: [](ch_dmbase), `DM`, `ISColoring`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMSetMatType()`, `MatColoring`, `MatFDColoringCreate()`
1430 @*/
1431 PetscErrorCode DMCreateColoring(DM dm, ISColoringType ctype, ISColoring *coloring)
1432 {
1433   PetscFunctionBegin;
1434   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
1435   PetscAssertPointer(coloring, 3);
1436   PetscUseTypeMethod(dm, getcoloring, ctype, coloring);
1437   PetscFunctionReturn(PETSC_SUCCESS);
1438 }
1439 
1440 /*@
1441   DMCreateMatrix - Gets an empty matrix for a `DM` that is most commonly used to store the Jacobian of a discrete PDE operator.
1442 
1443   Collective
1444 
1445   Input Parameter:
1446 . dm - the `DM` object
1447 
1448   Output Parameter:
1449 . mat - the empty Jacobian
1450 
1451   Options Database Key:
1452 . -dm_preallocate_only - Only preallocate the matrix for `DMCreateMatrix()` and `DMCreateMassMatrix()`, but do not fill it with zeros
1453 
1454   Level: beginner
1455 
1456   Notes:
1457   This properly preallocates the number of nonzeros in the sparse matrix so you
1458   do not need to do it yourself.
1459 
1460   By default it also sets the nonzero structure and puts in the zero entries. To prevent setting
1461   the nonzero pattern call `DMSetMatrixPreallocateOnly()`
1462 
1463   For `DMDA`, when you call `MatView()` on this matrix it is displayed using the global natural ordering, NOT in the ordering used
1464   internally by PETSc.
1465 
1466   For `DMDA`, in general it is easiest to use `MatSetValuesStencil()` or `MatSetValuesLocal()` to put values into the matrix because
1467   `MatSetValues()` requires the indices for the global numbering for the `DMDA` which is complic`ated to compute
1468 
1469 .seealso: [](ch_dmbase), `DM`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMSetMatType()`, `DMCreateMassMatrix()`
1470 @*/
1471 PetscErrorCode DMCreateMatrix(DM dm, Mat *mat)
1472 {
1473   PetscFunctionBegin;
1474   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
1475   PetscAssertPointer(mat, 2);
1476   PetscCall(MatInitializePackage());
1477   PetscCall(PetscLogEventBegin(DM_CreateMatrix, 0, 0, 0, 0));
1478   PetscUseTypeMethod(dm, creatematrix, mat);
1479   if (PetscDefined(USE_DEBUG)) {
1480     DM mdm;
1481 
1482     PetscCall(MatGetDM(*mat, &mdm));
1483     PetscCheck(mdm, PETSC_COMM_SELF, PETSC_ERR_PLIB, "DM type '%s' did not attach the DM to the matrix", ((PetscObject)dm)->type_name);
1484   }
1485   /* Handle nullspace and near nullspace */
1486   if (dm->Nf) {
1487     MatNullSpace nullSpace;
1488     PetscInt     Nf, f;
1489 
1490     PetscCall(DMGetNumFields(dm, &Nf));
1491     for (f = 0; f < Nf; ++f) {
1492       if (dm->nullspaceConstructors[f]) {
1493         PetscCall((*dm->nullspaceConstructors[f])(dm, f, f, &nullSpace));
1494         PetscCall(MatSetNullSpace(*mat, nullSpace));
1495         PetscCall(MatNullSpaceDestroy(&nullSpace));
1496         break;
1497       }
1498     }
1499     for (f = 0; f < Nf; ++f) {
1500       if (dm->nearnullspaceConstructors[f]) {
1501         PetscCall((*dm->nearnullspaceConstructors[f])(dm, f, f, &nullSpace));
1502         PetscCall(MatSetNearNullSpace(*mat, nullSpace));
1503         PetscCall(MatNullSpaceDestroy(&nullSpace));
1504       }
1505     }
1506   }
1507   PetscCall(PetscLogEventEnd(DM_CreateMatrix, 0, 0, 0, 0));
1508   PetscFunctionReturn(PETSC_SUCCESS);
1509 }
1510 
1511 /*@
1512   DMSetMatrixPreallocateSkip - When `DMCreateMatrix()` is called the matrix sizes and
1513   `ISLocalToGlobalMapping` will be properly set, but the data structures to store values in the
1514   matrices will not be preallocated.
1515 
1516   Logically Collective
1517 
1518   Input Parameters:
1519 + dm   - the `DM`
1520 - skip - `PETSC_TRUE` to skip preallocation
1521 
1522   Level: developer
1523 
1524   Notes:
1525   This is most useful to reduce initialization costs when `MatSetPreallocationCOO()` and
1526   `MatSetValuesCOO()` will be used.
1527 
1528 .seealso: [](ch_dmbase), `DM`, `DMCreateMatrix()`, `DMSetMatrixStructureOnly()`, `DMSetMatrixPreallocateOnly()`
1529 @*/
1530 PetscErrorCode DMSetMatrixPreallocateSkip(DM dm, PetscBool skip)
1531 {
1532   PetscFunctionBegin;
1533   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
1534   dm->prealloc_skip = skip;
1535   PetscFunctionReturn(PETSC_SUCCESS);
1536 }
1537 
1538 /*@
1539   DMSetMatrixPreallocateOnly - When `DMCreateMatrix()` is called the matrix will be properly
1540   preallocated but the nonzero structure and zero values will not be set.
1541 
1542   Logically Collective
1543 
1544   Input Parameters:
1545 + dm   - the `DM`
1546 - only - `PETSC_TRUE` if only want preallocation
1547 
1548   Options Database Key:
1549 . -dm_preallocate_only - Only preallocate the matrix for `DMCreateMatrix()`, `DMCreateMassMatrix()`, but do not fill it with zeros
1550 
1551   Level: developer
1552 
1553 .seealso: [](ch_dmbase), `DM`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMSetMatrixStructureOnly()`, `DMSetMatrixPreallocateSkip()`
1554 @*/
1555 PetscErrorCode DMSetMatrixPreallocateOnly(DM dm, PetscBool only)
1556 {
1557   PetscFunctionBegin;
1558   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
1559   dm->prealloc_only = only;
1560   PetscFunctionReturn(PETSC_SUCCESS);
1561 }
1562 
1563 /*@
1564   DMSetMatrixStructureOnly - When `DMCreateMatrix()` is called, the matrix structure will be created
1565   but the array for numerical values will not be allocated.
1566 
1567   Logically Collective
1568 
1569   Input Parameters:
1570 + dm   - the `DM`
1571 - only - `PETSC_TRUE` if you only want matrix structure
1572 
1573   Level: developer
1574 
1575 .seealso: [](ch_dmbase), `DM`, `DMCreateMatrix()`, `DMSetMatrixPreallocateOnly()`, `DMSetMatrixPreallocateSkip()`
1576 @*/
1577 PetscErrorCode DMSetMatrixStructureOnly(DM dm, PetscBool only)
1578 {
1579   PetscFunctionBegin;
1580   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
1581   dm->structure_only = only;
1582   PetscFunctionReturn(PETSC_SUCCESS);
1583 }
1584 
1585 /*@
1586   DMSetBlockingType - set the blocking granularity to be used for variable block size `DMCreateMatrix()` is called
1587 
1588   Logically Collective
1589 
1590   Input Parameters:
1591 + dm    - the `DM`
1592 - btype - block by topological point or field node
1593 
1594   Options Database Key:
1595 . -dm_blocking_type [topological_point, field_node] - use topological point blocking or field node blocking
1596 
1597   Level: advanced
1598 
1599 .seealso: [](ch_dmbase), `DM`, `DMCreateMatrix()`, `MatSetVariableBlockSizes()`
1600 @*/
1601 PetscErrorCode DMSetBlockingType(DM dm, DMBlockingType btype)
1602 {
1603   PetscFunctionBegin;
1604   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
1605   dm->blocking_type = btype;
1606   PetscFunctionReturn(PETSC_SUCCESS);
1607 }
1608 
1609 /*@
1610   DMGetBlockingType - get the blocking granularity to be used for variable block size `DMCreateMatrix()` is called
1611 
1612   Not Collective
1613 
1614   Input Parameter:
1615 . dm - the `DM`
1616 
1617   Output Parameter:
1618 . btype - block by topological point or field node
1619 
1620   Level: advanced
1621 
1622 .seealso: [](ch_dmbase), `DM`, `DMCreateMatrix()`, `MatSetVariableBlockSizes()`
1623 @*/
1624 PetscErrorCode DMGetBlockingType(DM dm, DMBlockingType *btype)
1625 {
1626   PetscFunctionBegin;
1627   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
1628   PetscAssertPointer(btype, 2);
1629   *btype = dm->blocking_type;
1630   PetscFunctionReturn(PETSC_SUCCESS);
1631 }
1632 
1633 /*@C
1634   DMGetWorkArray - Gets a work array guaranteed to be at least the input size, restore with `DMRestoreWorkArray()`
1635 
1636   Not Collective
1637 
1638   Input Parameters:
1639 + dm    - the `DM` object
1640 . count - The minimum size
1641 - dtype - MPI data type, often `MPIU_REAL`, `MPIU_SCALAR`, or `MPIU_INT`)
1642 
1643   Output Parameter:
1644 . mem - the work array
1645 
1646   Level: developer
1647 
1648   Note:
1649   A `DM` may stash the array between instantiations so using this routine may be more efficient than calling `PetscMalloc()`
1650 
1651   The array may contain nonzero values
1652 
1653 .seealso: [](ch_dmbase), `DM`, `DMDestroy()`, `DMCreate()`, `DMRestoreWorkArray()`, `PetscMalloc()`
1654 @*/
1655 PetscErrorCode DMGetWorkArray(DM dm, PetscInt count, MPI_Datatype dtype, void *mem)
1656 {
1657   DMWorkLink  link;
1658   PetscMPIInt dsize;
1659 
1660   PetscFunctionBegin;
1661   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
1662   PetscAssertPointer(mem, 4);
1663   if (!count) {
1664     *(void **)mem = NULL;
1665     PetscFunctionReturn(PETSC_SUCCESS);
1666   }
1667   if (dm->workin) {
1668     link       = dm->workin;
1669     dm->workin = dm->workin->next;
1670   } else {
1671     PetscCall(PetscNew(&link));
1672   }
1673   /* Avoid MPI_Type_size for most used datatypes
1674      Get size directly */
1675   if (dtype == MPIU_INT) dsize = sizeof(PetscInt);
1676   else if (dtype == MPIU_REAL) dsize = sizeof(PetscReal);
1677 #if defined(PETSC_USE_64BIT_INDICES)
1678   else if (dtype == MPI_INT) dsize = sizeof(int);
1679 #endif
1680 #if defined(PETSC_USE_COMPLEX)
1681   else if (dtype == MPIU_SCALAR) dsize = sizeof(PetscScalar);
1682 #endif
1683   else PetscCallMPI(MPI_Type_size(dtype, &dsize));
1684 
1685   if (((size_t)dsize * count) > link->bytes) {
1686     PetscCall(PetscFree(link->mem));
1687     PetscCall(PetscMalloc(dsize * count, &link->mem));
1688     link->bytes = dsize * count;
1689   }
1690   link->next  = dm->workout;
1691   dm->workout = link;
1692 #if defined(__MEMCHECK_H) && (defined(PLAT_amd64_linux) || defined(PLAT_x86_linux) || defined(PLAT_amd64_darwin))
1693   VALGRIND_MAKE_MEM_NOACCESS((char *)link->mem + (size_t)dsize * count, link->bytes - (size_t)dsize * count);
1694   VALGRIND_MAKE_MEM_UNDEFINED(link->mem, (size_t)dsize * count);
1695 #endif
1696   *(void **)mem = link->mem;
1697   PetscFunctionReturn(PETSC_SUCCESS);
1698 }
1699 
1700 /*@C
1701   DMRestoreWorkArray - Restores a work array obtained with `DMCreateWorkArray()`
1702 
1703   Not Collective
1704 
1705   Input Parameters:
1706 + dm    - the `DM` object
1707 . count - The minimum size
1708 - dtype - MPI data type, often `MPIU_REAL`, `MPIU_SCALAR`, `MPIU_INT`
1709 
1710   Output Parameter:
1711 . mem - the work array
1712 
1713   Level: developer
1714 
1715   Developer Notes:
1716   count and dtype are ignored, they are only needed for `DMGetWorkArray()`
1717 
1718 .seealso: [](ch_dmbase), `DM`, `DMDestroy()`, `DMCreate()`, `DMGetWorkArray()`
1719 @*/
1720 PetscErrorCode DMRestoreWorkArray(DM dm, PetscInt count, MPI_Datatype dtype, void *mem)
1721 {
1722   DMWorkLink *p, link;
1723 
1724   PetscFunctionBegin;
1725   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
1726   PetscAssertPointer(mem, 4);
1727   (void)count;
1728   (void)dtype;
1729   if (!*(void **)mem) PetscFunctionReturn(PETSC_SUCCESS);
1730   for (p = &dm->workout; (link = *p); p = &link->next) {
1731     if (link->mem == *(void **)mem) {
1732       *p            = link->next;
1733       link->next    = dm->workin;
1734       dm->workin    = link;
1735       *(void **)mem = NULL;
1736       PetscFunctionReturn(PETSC_SUCCESS);
1737     }
1738   }
1739   SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Array was not checked out");
1740 }
1741 
1742 /*@C
1743   DMSetNullSpaceConstructor - Provide a callback function which constructs the nullspace for a given field, defined with `DMAddField()`, when function spaces
1744   are joined or split, such as in `DMCreateSubDM()`
1745 
1746   Logically Collective; No Fortran Support
1747 
1748   Input Parameters:
1749 + dm     - The `DM`
1750 . field  - The field number for the nullspace
1751 - nullsp - A callback to create the nullspace
1752 
1753   Calling sequence of `nullsp`:
1754 + dm        - The present `DM`
1755 . origField - The field number given above, in the original `DM`
1756 . field     - The field number in dm
1757 - nullSpace - The nullspace for the given field
1758 
1759   Level: intermediate
1760 
1761 .seealso: [](ch_dmbase), `DM`, `DMAddField()`, `DMGetNullSpaceConstructor()`, `DMSetNearNullSpaceConstructor()`, `DMGetNearNullSpaceConstructor()`, `DMCreateSubDM()`, `DMCreateSuperDM()`
1762 @*/
1763 PetscErrorCode DMSetNullSpaceConstructor(DM dm, PetscInt field, PetscErrorCode (*nullsp)(DM dm, PetscInt origField, PetscInt field, MatNullSpace *nullSpace))
1764 {
1765   PetscFunctionBegin;
1766   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
1767   PetscCheck(field < 10, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Cannot handle %" PetscInt_FMT " >= 10 fields", field);
1768   dm->nullspaceConstructors[field] = nullsp;
1769   PetscFunctionReturn(PETSC_SUCCESS);
1770 }
1771 
1772 /*@C
1773   DMGetNullSpaceConstructor - Return the callback function which constructs the nullspace for a given field, defined with `DMAddField()`
1774 
1775   Not Collective; No Fortran Support
1776 
1777   Input Parameters:
1778 + dm    - The `DM`
1779 - field - The field number for the nullspace
1780 
1781   Output Parameter:
1782 . nullsp - A callback to create the nullspace
1783 
1784   Calling sequence of `nullsp`:
1785 + dm        - The present DM
1786 . origField - The field number given above, in the original DM
1787 . field     - The field number in dm
1788 - nullSpace - The nullspace for the given field
1789 
1790   Level: intermediate
1791 
1792 .seealso: [](ch_dmbase), `DM`, `DMAddField()`, `DMGetField()`, `DMSetNullSpaceConstructor()`, `DMSetNearNullSpaceConstructor()`, `DMGetNearNullSpaceConstructor()`, `DMCreateSubDM()`, `DMCreateSuperDM()`
1793 @*/
1794 PetscErrorCode DMGetNullSpaceConstructor(DM dm, PetscInt field, PetscErrorCode (**nullsp)(DM dm, PetscInt origField, PetscInt field, MatNullSpace *nullSpace))
1795 {
1796   PetscFunctionBegin;
1797   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
1798   PetscAssertPointer(nullsp, 3);
1799   PetscCheck(field < 10, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Cannot handle %" PetscInt_FMT " >= 10 fields", field);
1800   *nullsp = dm->nullspaceConstructors[field];
1801   PetscFunctionReturn(PETSC_SUCCESS);
1802 }
1803 
1804 /*@C
1805   DMSetNearNullSpaceConstructor - Provide a callback function which constructs the near-nullspace for a given field, defined with `DMAddField()`
1806 
1807   Logically Collective; No Fortran Support
1808 
1809   Input Parameters:
1810 + dm     - The `DM`
1811 . field  - The field number for the nullspace
1812 - nullsp - A callback to create the near-nullspace
1813 
1814   Calling sequence of `nullsp`:
1815 + dm        - The present `DM`
1816 . origField - The field number given above, in the original `DM`
1817 . field     - The field number in dm
1818 - nullSpace - The nullspace for the given field
1819 
1820   Level: intermediate
1821 
1822 .seealso: [](ch_dmbase), `DM`, `DMAddField()`, `DMGetNearNullSpaceConstructor()`, `DMSetNullSpaceConstructor()`, `DMGetNullSpaceConstructor()`, `DMCreateSubDM()`, `DMCreateSuperDM()`,
1823           `MatNullSpace`
1824 @*/
1825 PetscErrorCode DMSetNearNullSpaceConstructor(DM dm, PetscInt field, PetscErrorCode (*nullsp)(DM dm, PetscInt origField, PetscInt field, MatNullSpace *nullSpace))
1826 {
1827   PetscFunctionBegin;
1828   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
1829   PetscCheck(field < 10, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Cannot handle %" PetscInt_FMT " >= 10 fields", field);
1830   dm->nearnullspaceConstructors[field] = nullsp;
1831   PetscFunctionReturn(PETSC_SUCCESS);
1832 }
1833 
1834 /*@C
1835   DMGetNearNullSpaceConstructor - Return the callback function which constructs the near-nullspace for a given field, defined with `DMAddField()`
1836 
1837   Not Collective; No Fortran Support
1838 
1839   Input Parameters:
1840 + dm    - The `DM`
1841 - field - The field number for the nullspace
1842 
1843   Output Parameter:
1844 . nullsp - A callback to create the near-nullspace
1845 
1846   Calling sequence of `nullsp`:
1847 + dm        - The present `DM`
1848 . origField - The field number given above, in the original `DM`
1849 . field     - The field number in dm
1850 - nullSpace - The nullspace for the given field
1851 
1852   Level: intermediate
1853 
1854 .seealso: [](ch_dmbase), `DM`, `DMAddField()`, `DMGetField()`, `DMSetNearNullSpaceConstructor()`, `DMSetNullSpaceConstructor()`, `DMGetNullSpaceConstructor()`, `DMCreateSubDM()`,
1855           `MatNullSpace`, `DMCreateSuperDM()`
1856 @*/
1857 PetscErrorCode DMGetNearNullSpaceConstructor(DM dm, PetscInt field, PetscErrorCode (**nullsp)(DM dm, PetscInt origField, PetscInt field, MatNullSpace *nullSpace))
1858 {
1859   PetscFunctionBegin;
1860   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
1861   PetscAssertPointer(nullsp, 3);
1862   PetscCheck(field < 10, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Cannot handle %" PetscInt_FMT " >= 10 fields", field);
1863   *nullsp = dm->nearnullspaceConstructors[field];
1864   PetscFunctionReturn(PETSC_SUCCESS);
1865 }
1866 
1867 /*@C
1868   DMCreateFieldIS - Creates a set of `IS` objects with the global indices of dofs for each field defined with `DMAddField()`
1869 
1870   Not Collective; No Fortran Support
1871 
1872   Input Parameter:
1873 . dm - the `DM` object
1874 
1875   Output Parameters:
1876 + numFields  - The number of fields (or `NULL` if not requested)
1877 . fieldNames - The number of each field (or `NULL` if not requested)
1878 - fields     - The global indices for each field (or `NULL` if not requested)
1879 
1880   Level: intermediate
1881 
1882   Note:
1883   The user is responsible for freeing all requested arrays. In particular, every entry of names should be freed with
1884   `PetscFree()`, every entry of fields should be destroyed with `ISDestroy()`, and both arrays should be freed with
1885   `PetscFree()`.
1886 
1887   Developer Notes:
1888   It is not clear why both this function and `DMCreateFieldDecomposition()` exist. Having two seems redundant and confusing. This function should
1889   likely be removed.
1890 
1891 .seealso: [](ch_dmbase), `DM`, `DMAddField()`, `DMGetField()`, `DMDestroy()`, `DMView()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`,
1892           `DMCreateFieldDecomposition()`
1893 @*/
1894 PetscErrorCode DMCreateFieldIS(DM dm, PetscInt *numFields, char ***fieldNames, IS **fields)
1895 {
1896   PetscSection section, sectionGlobal;
1897 
1898   PetscFunctionBegin;
1899   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
1900   if (numFields) {
1901     PetscAssertPointer(numFields, 2);
1902     *numFields = 0;
1903   }
1904   if (fieldNames) {
1905     PetscAssertPointer(fieldNames, 3);
1906     *fieldNames = NULL;
1907   }
1908   if (fields) {
1909     PetscAssertPointer(fields, 4);
1910     *fields = NULL;
1911   }
1912   PetscCall(DMGetLocalSection(dm, &section));
1913   if (section) {
1914     PetscInt *fieldSizes, *fieldNc, **fieldIndices;
1915     PetscInt  nF, f, pStart, pEnd, p;
1916 
1917     PetscCall(DMGetGlobalSection(dm, &sectionGlobal));
1918     PetscCall(PetscSectionGetNumFields(section, &nF));
1919     PetscCall(PetscMalloc3(nF, &fieldSizes, nF, &fieldNc, nF, &fieldIndices));
1920     PetscCall(PetscSectionGetChart(sectionGlobal, &pStart, &pEnd));
1921     for (f = 0; f < nF; ++f) {
1922       fieldSizes[f] = 0;
1923       PetscCall(PetscSectionGetFieldComponents(section, f, &fieldNc[f]));
1924     }
1925     for (p = pStart; p < pEnd; ++p) {
1926       PetscInt gdof;
1927 
1928       PetscCall(PetscSectionGetDof(sectionGlobal, p, &gdof));
1929       if (gdof > 0) {
1930         for (f = 0; f < nF; ++f) {
1931           PetscInt fdof, fcdof, fpdof;
1932 
1933           PetscCall(PetscSectionGetFieldDof(section, p, f, &fdof));
1934           PetscCall(PetscSectionGetFieldConstraintDof(section, p, f, &fcdof));
1935           fpdof = fdof - fcdof;
1936           if (fpdof && fpdof != fieldNc[f]) {
1937             /* Layout does not admit a pointwise block size */
1938             fieldNc[f] = 1;
1939           }
1940           fieldSizes[f] += fpdof;
1941         }
1942       }
1943     }
1944     for (f = 0; f < nF; ++f) {
1945       PetscCall(PetscMalloc1(fieldSizes[f], &fieldIndices[f]));
1946       fieldSizes[f] = 0;
1947     }
1948     for (p = pStart; p < pEnd; ++p) {
1949       PetscInt gdof, goff;
1950 
1951       PetscCall(PetscSectionGetDof(sectionGlobal, p, &gdof));
1952       if (gdof > 0) {
1953         PetscCall(PetscSectionGetOffset(sectionGlobal, p, &goff));
1954         for (f = 0; f < nF; ++f) {
1955           PetscInt fdof, fcdof, fc;
1956 
1957           PetscCall(PetscSectionGetFieldDof(section, p, f, &fdof));
1958           PetscCall(PetscSectionGetFieldConstraintDof(section, p, f, &fcdof));
1959           for (fc = 0; fc < fdof - fcdof; ++fc, ++fieldSizes[f]) fieldIndices[f][fieldSizes[f]] = goff++;
1960         }
1961       }
1962     }
1963     if (numFields) *numFields = nF;
1964     if (fieldNames) {
1965       PetscCall(PetscMalloc1(nF, fieldNames));
1966       for (f = 0; f < nF; ++f) {
1967         const char *fieldName;
1968 
1969         PetscCall(PetscSectionGetFieldName(section, f, &fieldName));
1970         PetscCall(PetscStrallocpy(fieldName, (char **)&(*fieldNames)[f]));
1971       }
1972     }
1973     if (fields) {
1974       PetscCall(PetscMalloc1(nF, fields));
1975       for (f = 0; f < nF; ++f) {
1976         PetscInt bs, in[2], out[2];
1977 
1978         PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)dm), fieldSizes[f], fieldIndices[f], PETSC_OWN_POINTER, &(*fields)[f]));
1979         in[0] = -fieldNc[f];
1980         in[1] = fieldNc[f];
1981         PetscCall(MPIU_Allreduce(in, out, 2, MPIU_INT, MPI_MAX, PetscObjectComm((PetscObject)dm)));
1982         bs = (-out[0] == out[1]) ? out[1] : 1;
1983         PetscCall(ISSetBlockSize((*fields)[f], bs));
1984       }
1985     }
1986     PetscCall(PetscFree3(fieldSizes, fieldNc, fieldIndices));
1987   } else PetscTryTypeMethod(dm, createfieldis, numFields, fieldNames, fields);
1988   PetscFunctionReturn(PETSC_SUCCESS);
1989 }
1990 
1991 /*@C
1992   DMCreateFieldDecomposition - Returns a list of `IS` objects defining a decomposition of a problem into subproblems
1993   corresponding to different fields.
1994 
1995   Not Collective; No Fortran Support
1996 
1997   Input Parameter:
1998 . dm - the `DM` object
1999 
2000   Output Parameters:
2001 + len      - The number of fields (or `NULL` if not requested)
2002 . namelist - The name for each field (or `NULL` if not requested)
2003 . islist   - The global indices for each field (or `NULL` if not requested)
2004 - dmlist   - The `DM`s for each field subproblem (or `NULL`, if not requested; if `NULL` is returned, no `DM`s are defined)
2005 
2006   Level: intermediate
2007 
2008   Notes:
2009   Each `IS` contains the global indices of the dofs of the corresponding field, defined by
2010   `DMAddField()`. The optional list of `DM`s define the `DM` for each subproblem.
2011 
2012   The same as `DMCreateFieldIS()` but also returns a `DM` for each field.
2013 
2014   The user is responsible for freeing all requested arrays. In particular, every entry of names should be freed with
2015   `PetscFree()`, every entry of is should be destroyed with `ISDestroy()`, every entry of dm should be destroyed with `DMDestroy()`,
2016   and all of the arrays should be freed with `PetscFree()`.
2017 
2018   Developer Notes:
2019   It is not clear why this function and `DMCreateFieldIS()` exist. Having two seems redundant and confusing.
2020 
2021 .seealso: [](ch_dmbase), `DM`, `DMAddField()`, `DMCreateFieldIS()`, `DMCreateSubDM()`, `DMCreateDomainDecomposition()`, `DMDestroy()`, `DMView()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`
2022 @*/
2023 PetscErrorCode DMCreateFieldDecomposition(DM dm, PetscInt *len, char ***namelist, IS **islist, DM **dmlist)
2024 {
2025   PetscFunctionBegin;
2026   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
2027   if (len) {
2028     PetscAssertPointer(len, 2);
2029     *len = 0;
2030   }
2031   if (namelist) {
2032     PetscAssertPointer(namelist, 3);
2033     *namelist = NULL;
2034   }
2035   if (islist) {
2036     PetscAssertPointer(islist, 4);
2037     *islist = NULL;
2038   }
2039   if (dmlist) {
2040     PetscAssertPointer(dmlist, 5);
2041     *dmlist = NULL;
2042   }
2043   /*
2044    Is it a good idea to apply the following check across all impls?
2045    Perhaps some impls can have a well-defined decomposition before DMSetUp?
2046    This, however, follows the general principle that accessors are not well-behaved until the object is set up.
2047    */
2048   PetscCheck(dm->setupcalled, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONGSTATE, "Decomposition defined only after DMSetUp");
2049   if (!dm->ops->createfielddecomposition) {
2050     PetscSection section;
2051     PetscInt     numFields, f;
2052 
2053     PetscCall(DMGetLocalSection(dm, &section));
2054     if (section) PetscCall(PetscSectionGetNumFields(section, &numFields));
2055     if (section && numFields && dm->ops->createsubdm) {
2056       if (len) *len = numFields;
2057       if (namelist) PetscCall(PetscMalloc1(numFields, namelist));
2058       if (islist) PetscCall(PetscMalloc1(numFields, islist));
2059       if (dmlist) PetscCall(PetscMalloc1(numFields, dmlist));
2060       for (f = 0; f < numFields; ++f) {
2061         const char *fieldName;
2062 
2063         PetscCall(DMCreateSubDM(dm, 1, &f, islist ? &(*islist)[f] : NULL, dmlist ? &(*dmlist)[f] : NULL));
2064         if (namelist) {
2065           PetscCall(PetscSectionGetFieldName(section, f, &fieldName));
2066           PetscCall(PetscStrallocpy(fieldName, (char **)&(*namelist)[f]));
2067         }
2068       }
2069     } else {
2070       PetscCall(DMCreateFieldIS(dm, len, namelist, islist));
2071       /* By default there are no DMs associated with subproblems. */
2072       if (dmlist) *dmlist = NULL;
2073     }
2074   } else PetscUseTypeMethod(dm, createfielddecomposition, len, namelist, islist, dmlist);
2075   PetscFunctionReturn(PETSC_SUCCESS);
2076 }
2077 
2078 /*@C
2079   DMCreateSubDM - Returns an `IS` and `DM` encapsulating a subproblem defined by the fields passed in.
2080   The fields are defined by `DMCreateFieldIS()`.
2081 
2082   Not collective
2083 
2084   Input Parameters:
2085 + dm        - The `DM` object
2086 . numFields - The number of fields to select
2087 - fields    - The field numbers of the selected fields
2088 
2089   Output Parameters:
2090 + is    - The global indices for all the degrees of freedom in the new sub `DM`
2091 - subdm - The `DM` for the subproblem
2092 
2093   Level: intermediate
2094 
2095   Note:
2096   You need to call `DMPlexSetMigrationSF()` on the original `DM` if you want the Global-To-Natural map to be automatically constructed
2097 
2098 .seealso: [](ch_dmbase), `DM`, `DMCreateFieldIS()`, `DMCreateFieldDecomposition()`, `DMAddField()`, `DMCreateSuperDM()`, `IS`, `DMPlexSetMigrationSF()`, `DMDestroy()`, `DMView()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`
2099 @*/
2100 PetscErrorCode DMCreateSubDM(DM dm, PetscInt numFields, const PetscInt fields[], IS *is, DM *subdm)
2101 {
2102   PetscFunctionBegin;
2103   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
2104   PetscAssertPointer(fields, 3);
2105   if (is) PetscAssertPointer(is, 4);
2106   if (subdm) PetscAssertPointer(subdm, 5);
2107   PetscUseTypeMethod(dm, createsubdm, numFields, fields, is, subdm);
2108   PetscFunctionReturn(PETSC_SUCCESS);
2109 }
2110 
2111 /*@C
2112   DMCreateSuperDM - Returns an arrays of `IS` and `DM` encapsulating a superproblem defined by multiple `DM`s passed in.
2113 
2114   Not collective
2115 
2116   Input Parameters:
2117 + dms - The `DM` objects
2118 - n   - The number of `DM`s
2119 
2120   Output Parameters:
2121 + is      - The global indices for each of subproblem within the super `DM`, or NULL
2122 - superdm - The `DM` for the superproblem
2123 
2124   Level: intermediate
2125 
2126   Note:
2127   You need to call `DMPlexSetMigrationSF()` on the original `DM` if you want the Global-To-Natural map to be automatically constructed
2128 
2129 .seealso: [](ch_dmbase), `DM`, `DMCreateSubDM()`, `DMPlexSetMigrationSF()`, `DMDestroy()`, `DMView()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMCreateFieldIS()`
2130 @*/
2131 PetscErrorCode DMCreateSuperDM(DM dms[], PetscInt n, IS **is, DM *superdm)
2132 {
2133   PetscInt i;
2134 
2135   PetscFunctionBegin;
2136   PetscAssertPointer(dms, 1);
2137   for (i = 0; i < n; ++i) PetscValidHeaderSpecific(dms[i], DM_CLASSID, 1);
2138   if (is) PetscAssertPointer(is, 3);
2139   PetscAssertPointer(superdm, 4);
2140   PetscCheck(n >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Number of DMs must be nonnegative: %" PetscInt_FMT, n);
2141   if (n) {
2142     DM dm = dms[0];
2143     PetscCheck(dm->ops->createsuperdm, PetscObjectComm((PetscObject)dm), PETSC_ERR_SUP, "No method createsuperdm for DM of type %s", ((PetscObject)dm)->type_name);
2144     PetscCall((*dm->ops->createsuperdm)(dms, n, is, superdm));
2145   }
2146   PetscFunctionReturn(PETSC_SUCCESS);
2147 }
2148 
2149 /*@C
2150   DMCreateDomainDecomposition - Returns lists of `IS` objects defining a decomposition of a
2151   problem into subproblems corresponding to restrictions to pairs of nested subdomains.
2152 
2153   Not Collective
2154 
2155   Input Parameter:
2156 . dm - the `DM` object
2157 
2158   Output Parameters:
2159 + n           - The number of subproblems in the domain decomposition (or `NULL` if not requested)
2160 . namelist    - The name for each subdomain (or `NULL` if not requested)
2161 . innerislist - The global indices for each inner subdomain (or NULL, if not requested)
2162 . outerislist - The global indices for each outer subdomain (or NULL, if not requested)
2163 - dmlist      - The `DM`s for each subdomain subproblem (or NULL, if not requested; if `NULL` is returned, no `DM`s are defined)
2164 
2165   Level: intermediate
2166 
2167   Note:
2168   Each `IS` contains the global indices of the dofs of the corresponding subdomains with in the
2169   dofs of the original `DM`. The inner subdomains conceptually define a nonoverlapping
2170   covering, while outer subdomains can overlap.
2171 
2172   The optional list of `DM`s define a `DM` for each subproblem.
2173 
2174   The user is responsible for freeing all requested arrays. In particular, every entry of names should be freed with
2175   `PetscFree()`, every entry of is should be destroyed with `ISDestroy()`, every entry of dm should be destroyed with `DMDestroy()`,
2176   and all of the arrays should be freed with `PetscFree()`.
2177 
2178   Developer Notes:
2179   The `dmlist` is for the inner subdomains or the outer subdomains or all subdomains?
2180 
2181 .seealso: [](ch_dmbase), `DM`, `DMCreateFieldDecomposition()`, `DMDestroy()`, `DMCreateDomainDecompositionScatters()`, `DMView()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`
2182 @*/
2183 PetscErrorCode DMCreateDomainDecomposition(DM dm, PetscInt *n, char ***namelist, IS **innerislist, IS **outerislist, DM **dmlist)
2184 {
2185   DMSubDomainHookLink link;
2186   PetscInt            i, l;
2187 
2188   PetscFunctionBegin;
2189   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
2190   if (n) {
2191     PetscAssertPointer(n, 2);
2192     *n = 0;
2193   }
2194   if (namelist) {
2195     PetscAssertPointer(namelist, 3);
2196     *namelist = NULL;
2197   }
2198   if (innerislist) {
2199     PetscAssertPointer(innerislist, 4);
2200     *innerislist = NULL;
2201   }
2202   if (outerislist) {
2203     PetscAssertPointer(outerislist, 5);
2204     *outerislist = NULL;
2205   }
2206   if (dmlist) {
2207     PetscAssertPointer(dmlist, 6);
2208     *dmlist = NULL;
2209   }
2210   /*
2211    Is it a good idea to apply the following check across all impls?
2212    Perhaps some impls can have a well-defined decomposition before DMSetUp?
2213    This, however, follows the general principle that accessors are not well-behaved until the object is set up.
2214    */
2215   PetscCheck(dm->setupcalled, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONGSTATE, "Decomposition defined only after DMSetUp");
2216   if (dm->ops->createdomaindecomposition) {
2217     PetscUseTypeMethod(dm, createdomaindecomposition, &l, namelist, innerislist, outerislist, dmlist);
2218     /* copy subdomain hooks and context over to the subdomain DMs */
2219     if (dmlist && *dmlist) {
2220       for (i = 0; i < l; i++) {
2221         for (link = dm->subdomainhook; link; link = link->next) {
2222           if (link->ddhook) PetscCall((*link->ddhook)(dm, (*dmlist)[i], link->ctx));
2223         }
2224         if (dm->ctx) (*dmlist)[i]->ctx = dm->ctx;
2225       }
2226     }
2227     if (n) *n = l;
2228   }
2229   PetscFunctionReturn(PETSC_SUCCESS);
2230 }
2231 
2232 /*@C
2233   DMCreateDomainDecompositionScatters - Returns scatters to the subdomain vectors from the global vector
2234 
2235   Not Collective
2236 
2237   Input Parameters:
2238 + dm     - the `DM` object
2239 . n      - the number of subdomain scatters
2240 - subdms - the local subdomains
2241 
2242   Output Parameters:
2243 + iscat - scatter from global vector to nonoverlapping global vector entries on subdomain
2244 . oscat - scatter from global vector to overlapping global vector entries on subdomain
2245 - gscat - scatter from global vector to local vector on subdomain (fills in ghosts)
2246 
2247   Level: developer
2248 
2249   Note:
2250   This is an alternative to the iis and ois arguments in `DMCreateDomainDecomposition()` that allow for the solution
2251   of general nonlinear problems with overlapping subdomain methods.  While merely having index sets that enable subsets
2252   of the residual equations to be created is fine for linear problems, nonlinear problems require local assembly of
2253   solution and residual data.
2254 
2255   Developer Notes:
2256   Can the subdms input be anything or are they exactly the `DM` obtained from
2257   `DMCreateDomainDecomposition()`?
2258 
2259 .seealso: [](ch_dmbase), `DM`, `DMCreateDomainDecomposition()`, `DMDestroy()`, `DMView()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMCreateFieldIS()`
2260 @*/
2261 PetscErrorCode DMCreateDomainDecompositionScatters(DM dm, PetscInt n, DM *subdms, VecScatter **iscat, VecScatter **oscat, VecScatter **gscat)
2262 {
2263   PetscFunctionBegin;
2264   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
2265   PetscAssertPointer(subdms, 3);
2266   PetscUseTypeMethod(dm, createddscatters, n, subdms, iscat, oscat, gscat);
2267   PetscFunctionReturn(PETSC_SUCCESS);
2268 }
2269 
2270 /*@
2271   DMRefine - Refines a `DM` object using a standard nonadaptive refinement of the underlying mesh
2272 
2273   Collective
2274 
2275   Input Parameters:
2276 + dm   - the `DM` object
2277 - comm - the communicator to contain the new `DM` object (or `MPI_COMM_NULL`)
2278 
2279   Output Parameter:
2280 . dmf - the refined `DM`, or `NULL`
2281 
2282   Options Database Key:
2283 . -dm_plex_cell_refiner <strategy> - chooses the refinement strategy, e.g. regular, tohex
2284 
2285   Level: developer
2286 
2287   Note:
2288   If no refinement was done, the return value is `NULL`
2289 
2290 .seealso: [](ch_dmbase), `DM`, `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`
2291 @*/
2292 PetscErrorCode DMRefine(DM dm, MPI_Comm comm, DM *dmf)
2293 {
2294   DMRefineHookLink link;
2295 
2296   PetscFunctionBegin;
2297   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
2298   PetscCall(PetscLogEventBegin(DM_Refine, dm, 0, 0, 0));
2299   PetscUseTypeMethod(dm, refine, comm, dmf);
2300   if (*dmf) {
2301     (*dmf)->ops->creatematrix = dm->ops->creatematrix;
2302 
2303     PetscCall(PetscObjectCopyFortranFunctionPointers((PetscObject)dm, (PetscObject)*dmf));
2304 
2305     (*dmf)->ctx       = dm->ctx;
2306     (*dmf)->leveldown = dm->leveldown;
2307     (*dmf)->levelup   = dm->levelup + 1;
2308 
2309     PetscCall(DMSetMatType(*dmf, dm->mattype));
2310     for (link = dm->refinehook; link; link = link->next) {
2311       if (link->refinehook) PetscCall((*link->refinehook)(dm, *dmf, link->ctx));
2312     }
2313   }
2314   PetscCall(PetscLogEventEnd(DM_Refine, dm, 0, 0, 0));
2315   PetscFunctionReturn(PETSC_SUCCESS);
2316 }
2317 
2318 /*@C
2319   DMRefineHookAdd - adds a callback to be run when interpolating a nonlinear problem to a finer grid
2320 
2321   Logically Collective; No Fortran Support
2322 
2323   Input Parameters:
2324 + coarse     - `DM` on which to run a hook when interpolating to a finer level
2325 . refinehook - function to run when setting up the finer level
2326 . interphook - function to run to update data on finer levels (once per `SNESSolve()`)
2327 - ctx        - [optional] user-defined context for provide data for the hooks (may be `NULL`)
2328 
2329   Calling sequence of `refinehook`:
2330 + coarse - coarse level `DM`
2331 . fine   - fine level `DM` to interpolate problem to
2332 - ctx    - optional user-defined function context
2333 
2334   Calling sequence of `interphook`:
2335 + coarse - coarse level `DM`
2336 . interp - matrix interpolating a coarse-level solution to the finer grid
2337 . fine   - fine level `DM` to update
2338 - ctx    - optional user-defined function context
2339 
2340   Level: advanced
2341 
2342   Notes:
2343   This function is only needed if auxiliary data that is attached to the `DM`s via, for example, `PetscObjectCompose()`, needs to be
2344   passed to fine grids while grid sequencing.
2345 
2346   The actual interpolation is done when `DMInterpolate()` is called.
2347 
2348   If this function is called multiple times, the hooks will be run in the order they are added.
2349 
2350 .seealso: [](ch_dmbase), `DM`, `DMCoarsenHookAdd()`, `DMInterpolate()`, `SNESFASGetInterpolation()`, `SNESFASGetInjection()`, `PetscObjectCompose()`, `PetscContainerCreate()`
2351 @*/
2352 PetscErrorCode DMRefineHookAdd(DM coarse, PetscErrorCode (*refinehook)(DM coarse, DM fine, void *ctx), PetscErrorCode (*interphook)(DM coarse, Mat interp, DM fine, void *ctx), void *ctx)
2353 {
2354   DMRefineHookLink link, *p;
2355 
2356   PetscFunctionBegin;
2357   PetscValidHeaderSpecific(coarse, DM_CLASSID, 1);
2358   for (p = &coarse->refinehook; *p; p = &(*p)->next) { /* Scan to the end of the current list of hooks */
2359     if ((*p)->refinehook == refinehook && (*p)->interphook == interphook && (*p)->ctx == ctx) PetscFunctionReturn(PETSC_SUCCESS);
2360   }
2361   PetscCall(PetscNew(&link));
2362   link->refinehook = refinehook;
2363   link->interphook = interphook;
2364   link->ctx        = ctx;
2365   link->next       = NULL;
2366   *p               = link;
2367   PetscFunctionReturn(PETSC_SUCCESS);
2368 }
2369 
2370 /*@C
2371   DMRefineHookRemove - remove a callback from the list of hooks, that have been set with `DMRefineHookAdd()`, to be run when interpolating
2372   a nonlinear problem to a finer grid
2373 
2374   Logically Collective; No Fortran Support
2375 
2376   Input Parameters:
2377 + coarse     - the `DM` on which to run a hook when restricting to a coarser level
2378 . refinehook - function to run when setting up a finer level
2379 . interphook - function to run to update data on finer levels
2380 - ctx        - [optional] user-defined context for provide data for the hooks (may be `NULL`)
2381 
2382   Level: advanced
2383 
2384   Note:
2385   This function does nothing if the hook is not in the list.
2386 
2387 .seealso: [](ch_dmbase), `DM`, `DMRefineHookAdd()`, `DMCoarsenHookRemove()`, `DMInterpolate()`, `SNESFASGetInterpolation()`, `SNESFASGetInjection()`, `PetscObjectCompose()`, `PetscContainerCreate()`
2388 @*/
2389 PetscErrorCode DMRefineHookRemove(DM coarse, PetscErrorCode (*refinehook)(DM, DM, void *), PetscErrorCode (*interphook)(DM, Mat, DM, void *), void *ctx)
2390 {
2391   DMRefineHookLink link, *p;
2392 
2393   PetscFunctionBegin;
2394   PetscValidHeaderSpecific(coarse, DM_CLASSID, 1);
2395   for (p = &coarse->refinehook; *p; p = &(*p)->next) { /* Search the list of current hooks */
2396     if ((*p)->refinehook == refinehook && (*p)->interphook == interphook && (*p)->ctx == ctx) {
2397       link = *p;
2398       *p   = link->next;
2399       PetscCall(PetscFree(link));
2400       break;
2401     }
2402   }
2403   PetscFunctionReturn(PETSC_SUCCESS);
2404 }
2405 
2406 /*@
2407   DMInterpolate - interpolates user-defined problem data attached to a `DM` to a finer `DM` by running hooks registered by `DMRefineHookAdd()`
2408 
2409   Collective if any hooks are
2410 
2411   Input Parameters:
2412 + coarse - coarser `DM` to use as a base
2413 . interp - interpolation matrix, apply using `MatInterpolate()`
2414 - fine   - finer `DM` to update
2415 
2416   Level: developer
2417 
2418   Developer Notes:
2419   This routine is called `DMInterpolate()` while the hook is called `DMRefineHookAdd()`. It would be better to have an
2420   an API with consistent terminology.
2421 
2422 .seealso: [](ch_dmbase), `DM`, `DMRefineHookAdd()`, `MatInterpolate()`
2423 @*/
2424 PetscErrorCode DMInterpolate(DM coarse, Mat interp, DM fine)
2425 {
2426   DMRefineHookLink link;
2427 
2428   PetscFunctionBegin;
2429   for (link = fine->refinehook; link; link = link->next) {
2430     if (link->interphook) PetscCall((*link->interphook)(coarse, interp, fine, link->ctx));
2431   }
2432   PetscFunctionReturn(PETSC_SUCCESS);
2433 }
2434 
2435 /*@
2436   DMInterpolateSolution - Interpolates a solution from a coarse mesh to a fine mesh.
2437 
2438   Collective
2439 
2440   Input Parameters:
2441 + coarse    - coarse `DM`
2442 . fine      - fine `DM`
2443 . interp    - (optional) the matrix computed by `DMCreateInterpolation()`.  Implementations may not need this, but if it
2444             is available it can avoid some recomputation.  If it is provided, `MatInterpolate()` will be used if
2445             the coarse `DM` does not have a specialized implementation.
2446 - coarseSol - solution on the coarse mesh
2447 
2448   Output Parameter:
2449 . fineSol - the interpolation of coarseSol to the fine mesh
2450 
2451   Level: developer
2452 
2453   Note:
2454   This function exists because the interpolation of a solution vector between meshes is not always a linear
2455   map.  For example, if a boundary value problem has an inhomogeneous Dirichlet boundary condition that is compressed
2456   out of the solution vector.  Or if interpolation is inherently a nonlinear operation, such as a method using
2457   slope-limiting reconstruction.
2458 
2459   Developer Notes:
2460   This doesn't just interpolate "solutions" so its API name is questionable.
2461 
2462 .seealso: [](ch_dmbase), `DM`, `DMInterpolate()`, `DMCreateInterpolation()`
2463 @*/
2464 PetscErrorCode DMInterpolateSolution(DM coarse, DM fine, Mat interp, Vec coarseSol, Vec fineSol)
2465 {
2466   PetscErrorCode (*interpsol)(DM, DM, Mat, Vec, Vec) = NULL;
2467 
2468   PetscFunctionBegin;
2469   PetscValidHeaderSpecific(coarse, DM_CLASSID, 1);
2470   if (interp) PetscValidHeaderSpecific(interp, MAT_CLASSID, 3);
2471   PetscValidHeaderSpecific(coarseSol, VEC_CLASSID, 4);
2472   PetscValidHeaderSpecific(fineSol, VEC_CLASSID, 5);
2473 
2474   PetscCall(PetscObjectQueryFunction((PetscObject)coarse, "DMInterpolateSolution_C", &interpsol));
2475   if (interpsol) {
2476     PetscCall((*interpsol)(coarse, fine, interp, coarseSol, fineSol));
2477   } else if (interp) {
2478     PetscCall(MatInterpolate(interp, coarseSol, fineSol));
2479   } else SETERRQ(PetscObjectComm((PetscObject)coarse), PETSC_ERR_SUP, "DM %s does not implement DMInterpolateSolution()", ((PetscObject)coarse)->type_name);
2480   PetscFunctionReturn(PETSC_SUCCESS);
2481 }
2482 
2483 /*@
2484   DMGetRefineLevel - Gets the number of refinements that have generated this `DM` from some initial `DM`.
2485 
2486   Not Collective
2487 
2488   Input Parameter:
2489 . dm - the `DM` object
2490 
2491   Output Parameter:
2492 . level - number of refinements
2493 
2494   Level: developer
2495 
2496   Note:
2497   This can be used, by example, to set the number of coarser levels associated with this `DM` for a multigrid solver.
2498 
2499 .seealso: [](ch_dmbase), `DM`, `DMRefine()`, `DMCoarsen()`, `DMGetCoarsenLevel()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`
2500 @*/
2501 PetscErrorCode DMGetRefineLevel(DM dm, PetscInt *level)
2502 {
2503   PetscFunctionBegin;
2504   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
2505   *level = dm->levelup;
2506   PetscFunctionReturn(PETSC_SUCCESS);
2507 }
2508 
2509 /*@
2510   DMSetRefineLevel - Sets the number of refinements that have generated this `DM`.
2511 
2512   Not Collective
2513 
2514   Input Parameters:
2515 + dm    - the `DM` object
2516 - level - number of refinements
2517 
2518   Level: advanced
2519 
2520   Notes:
2521   This value is used by `PCMG` to determine how many multigrid levels to use
2522 
2523   The values are usually set automatically by the process that is causing the refinements of an initial `DM` by calling this routine.
2524 
2525 .seealso: [](ch_dmbase), `DM`, `DMGetRefineLevel()`, `DMCoarsen()`, `DMGetCoarsenLevel()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`
2526 @*/
2527 PetscErrorCode DMSetRefineLevel(DM dm, PetscInt level)
2528 {
2529   PetscFunctionBegin;
2530   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
2531   dm->levelup = level;
2532   PetscFunctionReturn(PETSC_SUCCESS);
2533 }
2534 
2535 /*@
2536   DMExtrude - Extrude a `DM` object from a surface
2537 
2538   Collective
2539 
2540   Input Parameters:
2541 + dm     - the `DM` object
2542 - layers - the number of extruded cell layers
2543 
2544   Output Parameter:
2545 . dme - the extruded `DM`, or `NULL`
2546 
2547   Level: developer
2548 
2549   Note:
2550   If no extrusion was done, the return value is `NULL`
2551 
2552 .seealso: [](ch_dmbase), `DM`, `DMRefine()`, `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`
2553 @*/
2554 PetscErrorCode DMExtrude(DM dm, PetscInt layers, DM *dme)
2555 {
2556   PetscFunctionBegin;
2557   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
2558   PetscUseTypeMethod(dm, extrude, layers, dme);
2559   if (*dme) {
2560     (*dme)->ops->creatematrix = dm->ops->creatematrix;
2561     PetscCall(PetscObjectCopyFortranFunctionPointers((PetscObject)dm, (PetscObject)*dme));
2562     (*dme)->ctx = dm->ctx;
2563     PetscCall(DMSetMatType(*dme, dm->mattype));
2564   }
2565   PetscFunctionReturn(PETSC_SUCCESS);
2566 }
2567 
2568 PetscErrorCode DMGetBasisTransformDM_Internal(DM dm, DM *tdm)
2569 {
2570   PetscFunctionBegin;
2571   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
2572   PetscAssertPointer(tdm, 2);
2573   *tdm = dm->transformDM;
2574   PetscFunctionReturn(PETSC_SUCCESS);
2575 }
2576 
2577 PetscErrorCode DMGetBasisTransformVec_Internal(DM dm, Vec *tv)
2578 {
2579   PetscFunctionBegin;
2580   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
2581   PetscAssertPointer(tv, 2);
2582   *tv = dm->transform;
2583   PetscFunctionReturn(PETSC_SUCCESS);
2584 }
2585 
2586 /*@
2587   DMHasBasisTransform - Whether the `DM` employs a basis transformation from functions in global vectors to functions in local vectors
2588 
2589   Input Parameter:
2590 . dm - The `DM`
2591 
2592   Output Parameter:
2593 . flg - `PETSC_TRUE` if a basis transformation should be done
2594 
2595   Level: developer
2596 
2597 .seealso: [](ch_dmbase), `DM`, `DMPlexGlobalToLocalBasis()`, `DMPlexLocalToGlobalBasis()`, `DMPlexCreateBasisRotation()`
2598 @*/
2599 PetscErrorCode DMHasBasisTransform(DM dm, PetscBool *flg)
2600 {
2601   Vec tv;
2602 
2603   PetscFunctionBegin;
2604   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
2605   PetscAssertPointer(flg, 2);
2606   PetscCall(DMGetBasisTransformVec_Internal(dm, &tv));
2607   *flg = tv ? PETSC_TRUE : PETSC_FALSE;
2608   PetscFunctionReturn(PETSC_SUCCESS);
2609 }
2610 
2611 PetscErrorCode DMConstructBasisTransform_Internal(DM dm)
2612 {
2613   PetscSection s, ts;
2614   PetscScalar *ta;
2615   PetscInt     cdim, pStart, pEnd, p, Nf, f, Nc, dof;
2616 
2617   PetscFunctionBegin;
2618   PetscCall(DMGetCoordinateDim(dm, &cdim));
2619   PetscCall(DMGetLocalSection(dm, &s));
2620   PetscCall(PetscSectionGetChart(s, &pStart, &pEnd));
2621   PetscCall(PetscSectionGetNumFields(s, &Nf));
2622   PetscCall(DMClone(dm, &dm->transformDM));
2623   PetscCall(DMGetLocalSection(dm->transformDM, &ts));
2624   PetscCall(PetscSectionSetNumFields(ts, Nf));
2625   PetscCall(PetscSectionSetChart(ts, pStart, pEnd));
2626   for (f = 0; f < Nf; ++f) {
2627     PetscCall(PetscSectionGetFieldComponents(s, f, &Nc));
2628     /* We could start to label fields by their transformation properties */
2629     if (Nc != cdim) continue;
2630     for (p = pStart; p < pEnd; ++p) {
2631       PetscCall(PetscSectionGetFieldDof(s, p, f, &dof));
2632       if (!dof) continue;
2633       PetscCall(PetscSectionSetFieldDof(ts, p, f, PetscSqr(cdim)));
2634       PetscCall(PetscSectionAddDof(ts, p, PetscSqr(cdim)));
2635     }
2636   }
2637   PetscCall(PetscSectionSetUp(ts));
2638   PetscCall(DMCreateLocalVector(dm->transformDM, &dm->transform));
2639   PetscCall(VecGetArray(dm->transform, &ta));
2640   for (p = pStart; p < pEnd; ++p) {
2641     for (f = 0; f < Nf; ++f) {
2642       PetscCall(PetscSectionGetFieldDof(ts, p, f, &dof));
2643       if (dof) {
2644         PetscReal          x[3] = {0.0, 0.0, 0.0};
2645         PetscScalar       *tva;
2646         const PetscScalar *A;
2647 
2648         /* TODO Get quadrature point for this dual basis vector for coordinate */
2649         PetscCall((*dm->transformGetMatrix)(dm, x, PETSC_TRUE, &A, dm->transformCtx));
2650         PetscCall(DMPlexPointLocalFieldRef(dm->transformDM, p, f, ta, (void *)&tva));
2651         PetscCall(PetscArraycpy(tva, A, PetscSqr(cdim)));
2652       }
2653     }
2654   }
2655   PetscCall(VecRestoreArray(dm->transform, &ta));
2656   PetscFunctionReturn(PETSC_SUCCESS);
2657 }
2658 
2659 PetscErrorCode DMCopyTransform(DM dm, DM newdm)
2660 {
2661   PetscFunctionBegin;
2662   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
2663   PetscValidHeaderSpecific(newdm, DM_CLASSID, 2);
2664   newdm->transformCtx       = dm->transformCtx;
2665   newdm->transformSetUp     = dm->transformSetUp;
2666   newdm->transformDestroy   = NULL;
2667   newdm->transformGetMatrix = dm->transformGetMatrix;
2668   if (newdm->transformSetUp) PetscCall(DMConstructBasisTransform_Internal(newdm));
2669   PetscFunctionReturn(PETSC_SUCCESS);
2670 }
2671 
2672 /*@C
2673   DMGlobalToLocalHookAdd - adds a callback to be run when `DMGlobalToLocal()` is called
2674 
2675   Logically Collective
2676 
2677   Input Parameters:
2678 + dm        - the `DM`
2679 . beginhook - function to run at the beginning of `DMGlobalToLocalBegin()`
2680 . endhook   - function to run after `DMGlobalToLocalEnd()` has completed
2681 - ctx       - [optional] user-defined context for provide data for the hooks (may be `NULL`)
2682 
2683   Calling sequence of `beginhook`:
2684 + dm   - global `DM`
2685 . g    - global vector
2686 . mode - mode
2687 . l    - local vector
2688 - ctx  - optional user-defined function context
2689 
2690   Calling sequence of `endhook`:
2691 + dm   - global `DM`
2692 . g    - global vector
2693 . mode - mode
2694 . l    - local vector
2695 - ctx  - optional user-defined function context
2696 
2697   Level: advanced
2698 
2699   Note:
2700   The hook may be used to provide, for example, values that represent boundary conditions in the local vectors that do not exist on the global vector.
2701 
2702 .seealso: [](ch_dmbase), `DM`, `DMGlobalToLocal()`, `DMRefineHookAdd()`, `SNESFASGetInterpolation()`, `SNESFASGetInjection()`, `PetscObjectCompose()`, `PetscContainerCreate()`
2703 @*/
2704 PetscErrorCode DMGlobalToLocalHookAdd(DM dm, PetscErrorCode (*beginhook)(DM dm, Vec g, InsertMode mode, Vec l, void *ctx), PetscErrorCode (*endhook)(DM dm, Vec g, InsertMode mode, Vec l, void *ctx), void *ctx)
2705 {
2706   DMGlobalToLocalHookLink link, *p;
2707 
2708   PetscFunctionBegin;
2709   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
2710   for (p = &dm->gtolhook; *p; p = &(*p)->next) { } /* Scan to the end of the current list of hooks */
2711   PetscCall(PetscNew(&link));
2712   link->beginhook = beginhook;
2713   link->endhook   = endhook;
2714   link->ctx       = ctx;
2715   link->next      = NULL;
2716   *p              = link;
2717   PetscFunctionReturn(PETSC_SUCCESS);
2718 }
2719 
2720 static PetscErrorCode DMGlobalToLocalHook_Constraints(DM dm, Vec g, InsertMode mode, Vec l, void *ctx)
2721 {
2722   Mat          cMat;
2723   Vec          cVec, cBias;
2724   PetscSection section, cSec;
2725   PetscInt     pStart, pEnd, p, dof;
2726 
2727   PetscFunctionBegin;
2728   (void)g;
2729   (void)ctx;
2730   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
2731   PetscCall(DMGetDefaultConstraints(dm, &cSec, &cMat, &cBias));
2732   if (cMat && (mode == INSERT_VALUES || mode == INSERT_ALL_VALUES || mode == INSERT_BC_VALUES)) {
2733     PetscInt nRows;
2734 
2735     PetscCall(MatGetSize(cMat, &nRows, NULL));
2736     if (nRows <= 0) PetscFunctionReturn(PETSC_SUCCESS);
2737     PetscCall(DMGetLocalSection(dm, &section));
2738     PetscCall(MatCreateVecs(cMat, NULL, &cVec));
2739     PetscCall(MatMult(cMat, l, cVec));
2740     if (cBias) PetscCall(VecAXPY(cVec, 1., cBias));
2741     PetscCall(PetscSectionGetChart(cSec, &pStart, &pEnd));
2742     for (p = pStart; p < pEnd; p++) {
2743       PetscCall(PetscSectionGetDof(cSec, p, &dof));
2744       if (dof) {
2745         PetscScalar *vals;
2746         PetscCall(VecGetValuesSection(cVec, cSec, p, &vals));
2747         PetscCall(VecSetValuesSection(l, section, p, vals, INSERT_ALL_VALUES));
2748       }
2749     }
2750     PetscCall(VecDestroy(&cVec));
2751   }
2752   PetscFunctionReturn(PETSC_SUCCESS);
2753 }
2754 
2755 /*@
2756   DMGlobalToLocal - update local vectors from global vector
2757 
2758   Neighbor-wise Collective
2759 
2760   Input Parameters:
2761 + dm   - the `DM` object
2762 . g    - the global vector
2763 . mode - `INSERT_VALUES` or `ADD_VALUES`
2764 - l    - the local vector
2765 
2766   Level: beginner
2767 
2768   Notes:
2769   The communication involved in this update can be overlapped with computation by instead using
2770   `DMGlobalToLocalBegin()` and `DMGlobalToLocalEnd()`.
2771 
2772   `DMGlobalToLocalHookAdd()` may be used to provide additional operations that are performed during the update process.
2773 
2774 .seealso: [](ch_dmbase), `DM`, `DMGlobalToLocalHookAdd()`, `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`,
2775           `DMGlobalToLocalEnd()`, `DMLocalToGlobalBegin()`, `DMLocalToGlobal()`, `DMLocalToGlobalEnd()`,
2776           `DMGlobalToLocalBegin()` `DMGlobalToLocalEnd()`
2777 @*/
2778 PetscErrorCode DMGlobalToLocal(DM dm, Vec g, InsertMode mode, Vec l)
2779 {
2780   PetscFunctionBegin;
2781   PetscCall(DMGlobalToLocalBegin(dm, g, mode, l));
2782   PetscCall(DMGlobalToLocalEnd(dm, g, mode, l));
2783   PetscFunctionReturn(PETSC_SUCCESS);
2784 }
2785 
2786 /*@
2787   DMGlobalToLocalBegin - Begins updating local vectors from global vector
2788 
2789   Neighbor-wise Collective
2790 
2791   Input Parameters:
2792 + dm   - the `DM` object
2793 . g    - the global vector
2794 . mode - `INSERT_VALUES` or `ADD_VALUES`
2795 - l    - the local vector
2796 
2797   Level: intermediate
2798 
2799   Notes:
2800   The operation is completed with `DMGlobalToLocalEnd()`
2801 
2802   One can perform local computations between the `DMGlobalToLocalBegin()` and  `DMGlobalToLocalEnd()` to overlap communication and computation
2803 
2804   `DMGlobalToLocal()` is a short form of  `DMGlobalToLocalBegin()` and  `DMGlobalToLocalEnd()`
2805 
2806   `DMGlobalToLocalHookAdd()` may be used to provide additional operations that are performed during the update process.
2807 
2808 .seealso: [](ch_dmbase), `DM`, `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMGlobalToLocal()`, `DMGlobalToLocalEnd()`, `DMLocalToGlobalBegin()`, `DMLocalToGlobal()`, `DMLocalToGlobalEnd()`
2809 @*/
2810 PetscErrorCode DMGlobalToLocalBegin(DM dm, Vec g, InsertMode mode, Vec l)
2811 {
2812   PetscSF                 sf;
2813   DMGlobalToLocalHookLink link;
2814 
2815   PetscFunctionBegin;
2816   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
2817   for (link = dm->gtolhook; link; link = link->next) {
2818     if (link->beginhook) PetscCall((*link->beginhook)(dm, g, mode, l, link->ctx));
2819   }
2820   PetscCall(DMGetSectionSF(dm, &sf));
2821   if (sf) {
2822     const PetscScalar *gArray;
2823     PetscScalar       *lArray;
2824     PetscMemType       lmtype, gmtype;
2825 
2826     PetscCheck(mode != ADD_VALUES, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Invalid insertion mode %d", (int)mode);
2827     PetscCall(VecGetArrayAndMemType(l, &lArray, &lmtype));
2828     PetscCall(VecGetArrayReadAndMemType(g, &gArray, &gmtype));
2829     PetscCall(PetscSFBcastWithMemTypeBegin(sf, MPIU_SCALAR, gmtype, gArray, lmtype, lArray, MPI_REPLACE));
2830     PetscCall(VecRestoreArrayAndMemType(l, &lArray));
2831     PetscCall(VecRestoreArrayReadAndMemType(g, &gArray));
2832   } else {
2833     PetscUseTypeMethod(dm, globaltolocalbegin, g, mode == INSERT_ALL_VALUES ? INSERT_VALUES : (mode == ADD_ALL_VALUES ? ADD_VALUES : mode), l);
2834   }
2835   PetscFunctionReturn(PETSC_SUCCESS);
2836 }
2837 
2838 /*@
2839   DMGlobalToLocalEnd - Ends updating local vectors from global vector
2840 
2841   Neighbor-wise Collective
2842 
2843   Input Parameters:
2844 + dm   - the `DM` object
2845 . g    - the global vector
2846 . mode - `INSERT_VALUES` or `ADD_VALUES`
2847 - l    - the local vector
2848 
2849   Level: intermediate
2850 
2851   Note:
2852   See `DMGlobalToLocalBegin()` for details.
2853 
2854 .seealso: [](ch_dmbase), `DM`, `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMGlobalToLocal()`, `DMLocalToGlobalBegin()`, `DMLocalToGlobal()`, `DMLocalToGlobalEnd()`
2855 @*/
2856 PetscErrorCode DMGlobalToLocalEnd(DM dm, Vec g, InsertMode mode, Vec l)
2857 {
2858   PetscSF                 sf;
2859   const PetscScalar      *gArray;
2860   PetscScalar            *lArray;
2861   PetscBool               transform;
2862   DMGlobalToLocalHookLink link;
2863   PetscMemType            lmtype, gmtype;
2864 
2865   PetscFunctionBegin;
2866   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
2867   PetscCall(DMGetSectionSF(dm, &sf));
2868   PetscCall(DMHasBasisTransform(dm, &transform));
2869   if (sf) {
2870     PetscCheck(mode != ADD_VALUES, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Invalid insertion mode %d", (int)mode);
2871 
2872     PetscCall(VecGetArrayAndMemType(l, &lArray, &lmtype));
2873     PetscCall(VecGetArrayReadAndMemType(g, &gArray, &gmtype));
2874     PetscCall(PetscSFBcastEnd(sf, MPIU_SCALAR, gArray, lArray, MPI_REPLACE));
2875     PetscCall(VecRestoreArrayAndMemType(l, &lArray));
2876     PetscCall(VecRestoreArrayReadAndMemType(g, &gArray));
2877     if (transform) PetscCall(DMPlexGlobalToLocalBasis(dm, l));
2878   } else {
2879     PetscUseTypeMethod(dm, globaltolocalend, g, mode == INSERT_ALL_VALUES ? INSERT_VALUES : (mode == ADD_ALL_VALUES ? ADD_VALUES : mode), l);
2880   }
2881   PetscCall(DMGlobalToLocalHook_Constraints(dm, g, mode, l, NULL));
2882   for (link = dm->gtolhook; link; link = link->next) {
2883     if (link->endhook) PetscCall((*link->endhook)(dm, g, mode, l, link->ctx));
2884   }
2885   PetscFunctionReturn(PETSC_SUCCESS);
2886 }
2887 
2888 /*@C
2889   DMLocalToGlobalHookAdd - adds a callback to be run when a local to global is called
2890 
2891   Logically Collective
2892 
2893   Input Parameters:
2894 + dm        - the `DM`
2895 . beginhook - function to run at the beginning of `DMLocalToGlobalBegin()`
2896 . endhook   - function to run after `DMLocalToGlobalEnd()` has completed
2897 - ctx       - [optional] user-defined context for provide data for the hooks (may be `NULL`)
2898 
2899   Calling sequence of `beginhook`:
2900 + global - global `DM`
2901 . l      - local vector
2902 . mode   - mode
2903 . g      - global vector
2904 - ctx    - optional user-defined function context
2905 
2906   Calling sequence of `endhook`:
2907 + global - global `DM`
2908 . l      - local vector
2909 . mode   - mode
2910 . g      - global vector
2911 - ctx    - optional user-defined function context
2912 
2913   Level: advanced
2914 
2915 .seealso: [](ch_dmbase), `DM`, `DMLocalToGlobal()`, `DMRefineHookAdd()`, `DMGlobalToLocalHookAdd()`, `SNESFASGetInterpolation()`, `SNESFASGetInjection()`, `PetscObjectCompose()`, `PetscContainerCreate()`
2916 @*/
2917 PetscErrorCode DMLocalToGlobalHookAdd(DM dm, PetscErrorCode (*beginhook)(DM global, Vec l, InsertMode mode, Vec g, void *ctx), PetscErrorCode (*endhook)(DM global, Vec l, InsertMode mode, Vec g, void *ctx), void *ctx)
2918 {
2919   DMLocalToGlobalHookLink link, *p;
2920 
2921   PetscFunctionBegin;
2922   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
2923   for (p = &dm->ltoghook; *p; p = &(*p)->next) { } /* Scan to the end of the current list of hooks */
2924   PetscCall(PetscNew(&link));
2925   link->beginhook = beginhook;
2926   link->endhook   = endhook;
2927   link->ctx       = ctx;
2928   link->next      = NULL;
2929   *p              = link;
2930   PetscFunctionReturn(PETSC_SUCCESS);
2931 }
2932 
2933 static PetscErrorCode DMLocalToGlobalHook_Constraints(DM dm, Vec l, InsertMode mode, Vec g, void *ctx)
2934 {
2935   Mat          cMat;
2936   Vec          cVec;
2937   PetscSection section, cSec;
2938   PetscInt     pStart, pEnd, p, dof;
2939 
2940   PetscFunctionBegin;
2941   (void)g;
2942   (void)ctx;
2943   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
2944   PetscCall(DMGetDefaultConstraints(dm, &cSec, &cMat, NULL));
2945   if (cMat && (mode == ADD_VALUES || mode == ADD_ALL_VALUES || mode == ADD_BC_VALUES)) {
2946     PetscInt nRows;
2947 
2948     PetscCall(MatGetSize(cMat, &nRows, NULL));
2949     if (nRows <= 0) PetscFunctionReturn(PETSC_SUCCESS);
2950     PetscCall(DMGetLocalSection(dm, &section));
2951     PetscCall(MatCreateVecs(cMat, NULL, &cVec));
2952     PetscCall(PetscSectionGetChart(cSec, &pStart, &pEnd));
2953     for (p = pStart; p < pEnd; p++) {
2954       PetscCall(PetscSectionGetDof(cSec, p, &dof));
2955       if (dof) {
2956         PetscInt     d;
2957         PetscScalar *vals;
2958         PetscCall(VecGetValuesSection(l, section, p, &vals));
2959         PetscCall(VecSetValuesSection(cVec, cSec, p, vals, mode));
2960         /* for this to be the true transpose, we have to zero the values that
2961          * we just extracted */
2962         for (d = 0; d < dof; d++) vals[d] = 0.;
2963       }
2964     }
2965     PetscCall(MatMultTransposeAdd(cMat, cVec, l, l));
2966     PetscCall(VecDestroy(&cVec));
2967   }
2968   PetscFunctionReturn(PETSC_SUCCESS);
2969 }
2970 /*@
2971   DMLocalToGlobal - updates global vectors from local vectors
2972 
2973   Neighbor-wise Collective
2974 
2975   Input Parameters:
2976 + dm   - the `DM` object
2977 . l    - the local vector
2978 . mode - if `INSERT_VALUES` then no parallel communication is used, if `ADD_VALUES` then all ghost points from the same base point accumulate into that base point.
2979 - g    - the global vector
2980 
2981   Level: beginner
2982 
2983   Notes:
2984   The communication involved in this update can be overlapped with computation by using
2985   `DMLocalToGlobalBegin()` and `DMLocalToGlobalEnd()`.
2986 
2987   In the `ADD_VALUES` case you normally would zero the receiving vector before beginning this operation.
2988 
2989   `INSERT_VALUES` is not supported for `DMDA`; in that case simply compute the values directly into a global vector instead of a local one.
2990 
2991   Use `DMLocalToGlobalHookAdd()` to add additional operations that are performed on the data during the update process
2992 
2993 .seealso: [](ch_dmbase), `DM`, `DMLocalToGlobalBegin()`, `DMLocalToGlobalEnd()`, `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMGlobalToLocal()`, `DMGlobalToLocalEnd()`, `DMGlobalToLocalBegin()`, `DMLocalToGlobalHookAdd()`, `DMGlobaToLocallHookAdd()`
2994 @*/
2995 PetscErrorCode DMLocalToGlobal(DM dm, Vec l, InsertMode mode, Vec g)
2996 {
2997   PetscFunctionBegin;
2998   PetscCall(DMLocalToGlobalBegin(dm, l, mode, g));
2999   PetscCall(DMLocalToGlobalEnd(dm, l, mode, g));
3000   PetscFunctionReturn(PETSC_SUCCESS);
3001 }
3002 
3003 /*@
3004   DMLocalToGlobalBegin - begins updating global vectors from local vectors
3005 
3006   Neighbor-wise Collective
3007 
3008   Input Parameters:
3009 + dm   - the `DM` object
3010 . l    - the local vector
3011 . mode - if `INSERT_VALUES` then no parallel communication is used, if `ADD_VALUES` then all ghost points from the same base point accumulate into that base point.
3012 - g    - the global vector
3013 
3014   Level: intermediate
3015 
3016   Notes:
3017   In the `ADD_VALUES` case you normally would zero the receiving vector before beginning this operation.
3018 
3019   `INSERT_VALUES is` not supported for `DMDA`, in that case simply compute the values directly into a global vector instead of a local one.
3020 
3021   Use `DMLocalToGlobalEnd()` to complete the communication process.
3022 
3023   `DMLocalToGlobal()` is a short form of  `DMLocalToGlobalBegin()` and  `DMLocalToGlobalEnd()`
3024 
3025   `DMLocalToGlobalHookAdd()` may be used to provide additional operations that are performed during the update process.
3026 
3027 .seealso: [](ch_dmbase), `DM`, `DMLocalToGlobal()`, `DMLocalToGlobalEnd()`, `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMGlobalToLocal()`, `DMGlobalToLocalEnd()`, `DMGlobalToLocalBegin()`
3028 @*/
3029 PetscErrorCode DMLocalToGlobalBegin(DM dm, Vec l, InsertMode mode, Vec g)
3030 {
3031   PetscSF                 sf;
3032   PetscSection            s, gs;
3033   DMLocalToGlobalHookLink link;
3034   Vec                     tmpl;
3035   const PetscScalar      *lArray;
3036   PetscScalar            *gArray;
3037   PetscBool               isInsert, transform, l_inplace = PETSC_FALSE, g_inplace = PETSC_FALSE;
3038   PetscMemType            lmtype = PETSC_MEMTYPE_HOST, gmtype = PETSC_MEMTYPE_HOST;
3039 
3040   PetscFunctionBegin;
3041   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
3042   for (link = dm->ltoghook; link; link = link->next) {
3043     if (link->beginhook) PetscCall((*link->beginhook)(dm, l, mode, g, link->ctx));
3044   }
3045   PetscCall(DMLocalToGlobalHook_Constraints(dm, l, mode, g, NULL));
3046   PetscCall(DMGetSectionSF(dm, &sf));
3047   PetscCall(DMGetLocalSection(dm, &s));
3048   switch (mode) {
3049   case INSERT_VALUES:
3050   case INSERT_ALL_VALUES:
3051   case INSERT_BC_VALUES:
3052     isInsert = PETSC_TRUE;
3053     break;
3054   case ADD_VALUES:
3055   case ADD_ALL_VALUES:
3056   case ADD_BC_VALUES:
3057     isInsert = PETSC_FALSE;
3058     break;
3059   default:
3060     SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Invalid insertion mode %d", mode);
3061   }
3062   if ((sf && !isInsert) || (s && isInsert)) {
3063     PetscCall(DMHasBasisTransform(dm, &transform));
3064     if (transform) {
3065       PetscCall(DMGetNamedLocalVector(dm, "__petsc_dm_transform_local_copy", &tmpl));
3066       PetscCall(VecCopy(l, tmpl));
3067       PetscCall(DMPlexLocalToGlobalBasis(dm, tmpl));
3068       PetscCall(VecGetArrayRead(tmpl, &lArray));
3069     } else if (isInsert) {
3070       PetscCall(VecGetArrayRead(l, &lArray));
3071     } else {
3072       PetscCall(VecGetArrayReadAndMemType(l, &lArray, &lmtype));
3073       l_inplace = PETSC_TRUE;
3074     }
3075     if (s && isInsert) {
3076       PetscCall(VecGetArray(g, &gArray));
3077     } else {
3078       PetscCall(VecGetArrayAndMemType(g, &gArray, &gmtype));
3079       g_inplace = PETSC_TRUE;
3080     }
3081     if (sf && !isInsert) {
3082       PetscCall(PetscSFReduceWithMemTypeBegin(sf, MPIU_SCALAR, lmtype, lArray, gmtype, gArray, MPIU_SUM));
3083     } else if (s && isInsert) {
3084       PetscInt gStart, pStart, pEnd, p;
3085 
3086       PetscCall(DMGetGlobalSection(dm, &gs));
3087       PetscCall(PetscSectionGetChart(s, &pStart, &pEnd));
3088       PetscCall(VecGetOwnershipRange(g, &gStart, NULL));
3089       for (p = pStart; p < pEnd; ++p) {
3090         PetscInt dof, gdof, cdof, gcdof, off, goff, d, e;
3091 
3092         PetscCall(PetscSectionGetDof(s, p, &dof));
3093         PetscCall(PetscSectionGetDof(gs, p, &gdof));
3094         PetscCall(PetscSectionGetConstraintDof(s, p, &cdof));
3095         PetscCall(PetscSectionGetConstraintDof(gs, p, &gcdof));
3096         PetscCall(PetscSectionGetOffset(s, p, &off));
3097         PetscCall(PetscSectionGetOffset(gs, p, &goff));
3098         /* Ignore off-process data and points with no global data */
3099         if (!gdof || goff < 0) continue;
3100         PetscCheck(dof == gdof, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Inconsistent sizes, p: %" PetscInt_FMT " dof: %" PetscInt_FMT " gdof: %" PetscInt_FMT " cdof: %" PetscInt_FMT " gcdof: %" PetscInt_FMT, p, dof, gdof, cdof, gcdof);
3101         /* If no constraints are enforced in the global vector */
3102         if (!gcdof) {
3103           for (d = 0; d < dof; ++d) gArray[goff - gStart + d] = lArray[off + d];
3104           /* If constraints are enforced in the global vector */
3105         } else if (cdof == gcdof) {
3106           const PetscInt *cdofs;
3107           PetscInt        cind = 0;
3108 
3109           PetscCall(PetscSectionGetConstraintIndices(s, p, &cdofs));
3110           for (d = 0, e = 0; d < dof; ++d) {
3111             if ((cind < cdof) && (d == cdofs[cind])) {
3112               ++cind;
3113               continue;
3114             }
3115             gArray[goff - gStart + e++] = lArray[off + d];
3116           }
3117         } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Inconsistent sizes, p: %" PetscInt_FMT " dof: %" PetscInt_FMT " gdof: %" PetscInt_FMT " cdof: %" PetscInt_FMT " gcdof: %" PetscInt_FMT, p, dof, gdof, cdof, gcdof);
3118       }
3119     }
3120     if (g_inplace) {
3121       PetscCall(VecRestoreArrayAndMemType(g, &gArray));
3122     } else {
3123       PetscCall(VecRestoreArray(g, &gArray));
3124     }
3125     if (transform) {
3126       PetscCall(VecRestoreArrayRead(tmpl, &lArray));
3127       PetscCall(DMRestoreNamedLocalVector(dm, "__petsc_dm_transform_local_copy", &tmpl));
3128     } else if (l_inplace) {
3129       PetscCall(VecRestoreArrayReadAndMemType(l, &lArray));
3130     } else {
3131       PetscCall(VecRestoreArrayRead(l, &lArray));
3132     }
3133   } else {
3134     PetscUseTypeMethod(dm, localtoglobalbegin, l, mode == INSERT_ALL_VALUES ? INSERT_VALUES : (mode == ADD_ALL_VALUES ? ADD_VALUES : mode), g);
3135   }
3136   PetscFunctionReturn(PETSC_SUCCESS);
3137 }
3138 
3139 /*@
3140   DMLocalToGlobalEnd - updates global vectors from local vectors
3141 
3142   Neighbor-wise Collective
3143 
3144   Input Parameters:
3145 + dm   - the `DM` object
3146 . l    - the local vector
3147 . mode - `INSERT_VALUES` or `ADD_VALUES`
3148 - g    - the global vector
3149 
3150   Level: intermediate
3151 
3152   Note:
3153   See `DMLocalToGlobalBegin()` for full details
3154 
3155 .seealso: [](ch_dmbase), `DM`, `DMLocalToGlobalBegin()`, `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMGlobalToLocalEnd()`
3156 @*/
3157 PetscErrorCode DMLocalToGlobalEnd(DM dm, Vec l, InsertMode mode, Vec g)
3158 {
3159   PetscSF                 sf;
3160   PetscSection            s;
3161   DMLocalToGlobalHookLink link;
3162   PetscBool               isInsert, transform;
3163 
3164   PetscFunctionBegin;
3165   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
3166   PetscCall(DMGetSectionSF(dm, &sf));
3167   PetscCall(DMGetLocalSection(dm, &s));
3168   switch (mode) {
3169   case INSERT_VALUES:
3170   case INSERT_ALL_VALUES:
3171     isInsert = PETSC_TRUE;
3172     break;
3173   case ADD_VALUES:
3174   case ADD_ALL_VALUES:
3175     isInsert = PETSC_FALSE;
3176     break;
3177   default:
3178     SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Invalid insertion mode %d", mode);
3179   }
3180   if (sf && !isInsert) {
3181     const PetscScalar *lArray;
3182     PetscScalar       *gArray;
3183     Vec                tmpl;
3184 
3185     PetscCall(DMHasBasisTransform(dm, &transform));
3186     if (transform) {
3187       PetscCall(DMGetNamedLocalVector(dm, "__petsc_dm_transform_local_copy", &tmpl));
3188       PetscCall(VecGetArrayRead(tmpl, &lArray));
3189     } else {
3190       PetscCall(VecGetArrayReadAndMemType(l, &lArray, NULL));
3191     }
3192     PetscCall(VecGetArrayAndMemType(g, &gArray, NULL));
3193     PetscCall(PetscSFReduceEnd(sf, MPIU_SCALAR, lArray, gArray, MPIU_SUM));
3194     if (transform) {
3195       PetscCall(VecRestoreArrayRead(tmpl, &lArray));
3196       PetscCall(DMRestoreNamedLocalVector(dm, "__petsc_dm_transform_local_copy", &tmpl));
3197     } else {
3198       PetscCall(VecRestoreArrayReadAndMemType(l, &lArray));
3199     }
3200     PetscCall(VecRestoreArrayAndMemType(g, &gArray));
3201   } else if (s && isInsert) {
3202   } else {
3203     PetscUseTypeMethod(dm, localtoglobalend, l, mode == INSERT_ALL_VALUES ? INSERT_VALUES : (mode == ADD_ALL_VALUES ? ADD_VALUES : mode), g);
3204   }
3205   for (link = dm->ltoghook; link; link = link->next) {
3206     if (link->endhook) PetscCall((*link->endhook)(dm, g, mode, l, link->ctx));
3207   }
3208   PetscFunctionReturn(PETSC_SUCCESS);
3209 }
3210 
3211 /*@
3212   DMLocalToLocalBegin - Begins the process of mapping values from a local vector (that include
3213   ghost points that contain irrelevant values) to another local vector where the ghost points
3214   in the second are set correctly from values on other MPI ranks.
3215 
3216   Neighbor-wise Collective
3217 
3218   Input Parameters:
3219 + dm   - the `DM` object
3220 . g    - the original local vector
3221 - mode - one of `INSERT_VALUES` or `ADD_VALUES`
3222 
3223   Output Parameter:
3224 . l - the local vector with correct ghost values
3225 
3226   Level: intermediate
3227 
3228   Notes:
3229   Must be followed by `DMLocalToLocalEnd()`.
3230 
3231 .seealso: [](ch_dmbase), `DM`, `DMLocalToLocalEnd()`, `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateLocalVector()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMGlobalToLocalEnd()`, `DMLocalToGlobalBegin()`
3232 @*/
3233 PetscErrorCode DMLocalToLocalBegin(DM dm, Vec g, InsertMode mode, Vec l)
3234 {
3235   PetscFunctionBegin;
3236   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
3237   PetscValidHeaderSpecific(g, VEC_CLASSID, 2);
3238   PetscValidHeaderSpecific(l, VEC_CLASSID, 4);
3239   PetscUseTypeMethod(dm, localtolocalbegin, g, mode == INSERT_ALL_VALUES ? INSERT_VALUES : (mode == ADD_ALL_VALUES ? ADD_VALUES : mode), l);
3240   PetscFunctionReturn(PETSC_SUCCESS);
3241 }
3242 
3243 /*@
3244   DMLocalToLocalEnd - Maps from a local vector to another local vector where the ghost
3245   points in the second are set correctly. Must be preceded by `DMLocalToLocalBegin()`.
3246 
3247   Neighbor-wise Collective
3248 
3249   Input Parameters:
3250 + dm   - the `DM` object
3251 . g    - the original local vector
3252 - mode - one of `INSERT_VALUES` or `ADD_VALUES`
3253 
3254   Output Parameter:
3255 . l - the local vector with correct ghost values
3256 
3257   Level: intermediate
3258 
3259 .seealso: [](ch_dmbase), `DM`, `DMLocalToLocalBegin()`, `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateLocalVector()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMGlobalToLocalEnd()`, `DMLocalToGlobalBegin()`
3260 @*/
3261 PetscErrorCode DMLocalToLocalEnd(DM dm, Vec g, InsertMode mode, Vec l)
3262 {
3263   PetscFunctionBegin;
3264   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
3265   PetscValidHeaderSpecific(g, VEC_CLASSID, 2);
3266   PetscValidHeaderSpecific(l, VEC_CLASSID, 4);
3267   PetscUseTypeMethod(dm, localtolocalend, g, mode == INSERT_ALL_VALUES ? INSERT_VALUES : (mode == ADD_ALL_VALUES ? ADD_VALUES : mode), l);
3268   PetscFunctionReturn(PETSC_SUCCESS);
3269 }
3270 
3271 /*@
3272   DMCoarsen - Coarsens a `DM` object using a standard, non-adaptive coarsening of the underlying mesh
3273 
3274   Collective
3275 
3276   Input Parameters:
3277 + dm   - the `DM` object
3278 - comm - the communicator to contain the new `DM` object (or `MPI_COMM_NULL`)
3279 
3280   Output Parameter:
3281 . dmc - the coarsened `DM`
3282 
3283   Level: developer
3284 
3285 .seealso: [](ch_dmbase), `DM`, `DMRefine()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`
3286 @*/
3287 PetscErrorCode DMCoarsen(DM dm, MPI_Comm comm, DM *dmc)
3288 {
3289   DMCoarsenHookLink link;
3290 
3291   PetscFunctionBegin;
3292   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
3293   PetscCall(PetscLogEventBegin(DM_Coarsen, dm, 0, 0, 0));
3294   PetscUseTypeMethod(dm, coarsen, comm, dmc);
3295   if (*dmc) {
3296     (*dmc)->bind_below = dm->bind_below; /* Propagate this from parent DM; otherwise -dm_bind_below will be useless for multigrid cases. */
3297     PetscCall(DMSetCoarseDM(dm, *dmc));
3298     (*dmc)->ops->creatematrix = dm->ops->creatematrix;
3299     PetscCall(PetscObjectCopyFortranFunctionPointers((PetscObject)dm, (PetscObject)*dmc));
3300     (*dmc)->ctx       = dm->ctx;
3301     (*dmc)->levelup   = dm->levelup;
3302     (*dmc)->leveldown = dm->leveldown + 1;
3303     PetscCall(DMSetMatType(*dmc, dm->mattype));
3304     for (link = dm->coarsenhook; link; link = link->next) {
3305       if (link->coarsenhook) PetscCall((*link->coarsenhook)(dm, *dmc, link->ctx));
3306     }
3307   }
3308   PetscCall(PetscLogEventEnd(DM_Coarsen, dm, 0, 0, 0));
3309   PetscCheck(*dmc, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "NULL coarse mesh produced");
3310   PetscFunctionReturn(PETSC_SUCCESS);
3311 }
3312 
3313 /*@C
3314   DMCoarsenHookAdd - adds a callback to be run when restricting a nonlinear problem to the coarse grid
3315 
3316   Logically Collective; No Fortran Support
3317 
3318   Input Parameters:
3319 + fine         - `DM` on which to run a hook when restricting to a coarser level
3320 . coarsenhook  - function to run when setting up a coarser level
3321 . restricthook - function to run to update data on coarser levels (called once per `SNESSolve()`)
3322 - ctx          - [optional] user-defined context for provide data for the hooks (may be `NULL`)
3323 
3324   Calling sequence of `coarsenhook`:
3325 + fine   - fine level `DM`
3326 . coarse - coarse level `DM` to restrict problem to
3327 - ctx    - optional user-defined function context
3328 
3329   Calling sequence of `restricthook`:
3330 + fine      - fine level `DM`
3331 . mrestrict - matrix restricting a fine-level solution to the coarse grid, usually the transpose of the interpolation
3332 . rscale    - scaling vector for restriction
3333 . inject    - matrix restricting by injection
3334 . coarse    - coarse level DM to update
3335 - ctx       - optional user-defined function context
3336 
3337   Level: advanced
3338 
3339   Notes:
3340   This function is only needed if auxiliary data, attached to the `DM` with `PetscObjectCompose()`, needs to be set up or passed from the fine `DM` to the coarse `DM`.
3341 
3342   If this function is called multiple times, the hooks will be run in the order they are added.
3343 
3344   In order to compose with nonlinear preconditioning without duplicating storage, the hook should be implemented to
3345   extract the finest level information from its context (instead of from the `SNES`).
3346 
3347   The hooks are automatically called by `DMRestrict()`
3348 
3349 .seealso: [](ch_dmbase), `DM`, `DMCoarsenHookRemove()`, `DMRefineHookAdd()`, `SNESFASGetInterpolation()`, `SNESFASGetInjection()`, `PetscObjectCompose()`, `PetscContainerCreate()`
3350 @*/
3351 PetscErrorCode DMCoarsenHookAdd(DM fine, PetscErrorCode (*coarsenhook)(DM fine, DM coarse, void *ctx), PetscErrorCode (*restricthook)(DM fine, Mat mrestrict, Vec rscale, Mat inject, DM coarse, void *ctx), void *ctx)
3352 {
3353   DMCoarsenHookLink link, *p;
3354 
3355   PetscFunctionBegin;
3356   PetscValidHeaderSpecific(fine, DM_CLASSID, 1);
3357   for (p = &fine->coarsenhook; *p; p = &(*p)->next) { /* Scan to the end of the current list of hooks */
3358     if ((*p)->coarsenhook == coarsenhook && (*p)->restricthook == restricthook && (*p)->ctx == ctx) PetscFunctionReturn(PETSC_SUCCESS);
3359   }
3360   PetscCall(PetscNew(&link));
3361   link->coarsenhook  = coarsenhook;
3362   link->restricthook = restricthook;
3363   link->ctx          = ctx;
3364   link->next         = NULL;
3365   *p                 = link;
3366   PetscFunctionReturn(PETSC_SUCCESS);
3367 }
3368 
3369 /*@C
3370   DMCoarsenHookRemove - remove a callback set with `DMCoarsenHookAdd()`
3371 
3372   Logically Collective; No Fortran Support
3373 
3374   Input Parameters:
3375 + fine         - `DM` on which to run a hook when restricting to a coarser level
3376 . coarsenhook  - function to run when setting up a coarser level
3377 . restricthook - function to run to update data on coarser levels
3378 - ctx          - [optional] user-defined context for provide data for the hooks (may be `NULL`)
3379 
3380   Level: advanced
3381 
3382   Note:
3383   This function does nothing if the hook is not in the list.
3384 
3385 .seealso: [](ch_dmbase), `DM`, `DMCoarsenHookAdd()`, `DMRefineHookAdd()`, `SNESFASGetInterpolation()`, `SNESFASGetInjection()`, `PetscObjectCompose()`, `PetscContainerCreate()`
3386 @*/
3387 PetscErrorCode DMCoarsenHookRemove(DM fine, PetscErrorCode (*coarsenhook)(DM, DM, void *), PetscErrorCode (*restricthook)(DM, Mat, Vec, Mat, DM, void *), void *ctx)
3388 {
3389   DMCoarsenHookLink link, *p;
3390 
3391   PetscFunctionBegin;
3392   PetscValidHeaderSpecific(fine, DM_CLASSID, 1);
3393   for (p = &fine->coarsenhook; *p; p = &(*p)->next) { /* Search the list of current hooks */
3394     if ((*p)->coarsenhook == coarsenhook && (*p)->restricthook == restricthook && (*p)->ctx == ctx) {
3395       link = *p;
3396       *p   = link->next;
3397       PetscCall(PetscFree(link));
3398       break;
3399     }
3400   }
3401   PetscFunctionReturn(PETSC_SUCCESS);
3402 }
3403 
3404 /*@
3405   DMRestrict - restricts user-defined problem data to a coarser `DM` by running hooks registered by `DMCoarsenHookAdd()`
3406 
3407   Collective if any hooks are
3408 
3409   Input Parameters:
3410 + fine    - finer `DM` from which the data is obtained
3411 . restrct - restriction matrix, apply using `MatRestrict()`, usually the transpose of the interpolation
3412 . rscale  - scaling vector for restriction
3413 . inject  - injection matrix, also use `MatRestrict()`
3414 - coarse  - coarser `DM` to update
3415 
3416   Level: developer
3417 
3418   Developer Notes:
3419   Though this routine is called `DMRestrict()` the hooks are added with `DMCoarsenHookAdd()`, a consistent terminology would be better
3420 
3421 .seealso: [](ch_dmbase), `DM`, `DMCoarsenHookAdd()`, `MatRestrict()`, `DMInterpolate()`, `DMRefineHookAdd()`
3422 @*/
3423 PetscErrorCode DMRestrict(DM fine, Mat restrct, Vec rscale, Mat inject, DM coarse)
3424 {
3425   DMCoarsenHookLink link;
3426 
3427   PetscFunctionBegin;
3428   for (link = fine->coarsenhook; link; link = link->next) {
3429     if (link->restricthook) PetscCall((*link->restricthook)(fine, restrct, rscale, inject, coarse, link->ctx));
3430   }
3431   PetscFunctionReturn(PETSC_SUCCESS);
3432 }
3433 
3434 /*@C
3435   DMSubDomainHookAdd - adds a callback to be run when restricting a problem to the coarse grid
3436 
3437   Logically Collective; No Fortran Support
3438 
3439   Input Parameters:
3440 + global       - global `DM`
3441 . ddhook       - function to run to pass data to the decomposition `DM` upon its creation
3442 . restricthook - function to run to update data on block solve (at the beginning of the block solve)
3443 - ctx          - [optional] user-defined context for provide data for the hooks (may be `NULL`)
3444 
3445   Calling sequence of `ddhook`:
3446 + global - global `DM`
3447 . block  - block `DM`
3448 - ctx    - optional user-defined function context
3449 
3450   Calling sequence of `restricthook`:
3451 + global - global `DM`
3452 . out    - scatter to the outer (with ghost and overlap points) block vector
3453 . in     - scatter to block vector values only owned locally
3454 . block  - block `DM`
3455 - ctx    - optional user-defined function context
3456 
3457   Level: advanced
3458 
3459   Notes:
3460   This function is only needed if auxiliary data needs to be set up on subdomain `DM`s.
3461 
3462   If this function is called multiple times, the hooks will be run in the order they are added.
3463 
3464   In order to compose with nonlinear preconditioning without duplicating storage, the hook should be implemented to
3465   extract the global information from its context (instead of from the `SNES`).
3466 
3467 .seealso: [](ch_dmbase), `DM`, `DMSubDomainHookRemove()`, `DMRefineHookAdd()`, `SNESFASGetInterpolation()`, `SNESFASGetInjection()`, `PetscObjectCompose()`, `PetscContainerCreate()`
3468 @*/
3469 PetscErrorCode DMSubDomainHookAdd(DM global, PetscErrorCode (*ddhook)(DM global, DM block, void *ctx), PetscErrorCode (*restricthook)(DM global, VecScatter out, VecScatter in, DM block, void *ctx), void *ctx)
3470 {
3471   DMSubDomainHookLink link, *p;
3472 
3473   PetscFunctionBegin;
3474   PetscValidHeaderSpecific(global, DM_CLASSID, 1);
3475   for (p = &global->subdomainhook; *p; p = &(*p)->next) { /* Scan to the end of the current list of hooks */
3476     if ((*p)->ddhook == ddhook && (*p)->restricthook == restricthook && (*p)->ctx == ctx) PetscFunctionReturn(PETSC_SUCCESS);
3477   }
3478   PetscCall(PetscNew(&link));
3479   link->restricthook = restricthook;
3480   link->ddhook       = ddhook;
3481   link->ctx          = ctx;
3482   link->next         = NULL;
3483   *p                 = link;
3484   PetscFunctionReturn(PETSC_SUCCESS);
3485 }
3486 
3487 /*@C
3488   DMSubDomainHookRemove - remove a callback from the list to be run when restricting a problem to the coarse grid
3489 
3490   Logically Collective; No Fortran Support
3491 
3492   Input Parameters:
3493 + global       - global `DM`
3494 . ddhook       - function to run to pass data to the decomposition `DM` upon its creation
3495 . restricthook - function to run to update data on block solve (at the beginning of the block solve)
3496 - ctx          - [optional] user-defined context for provide data for the hooks (may be `NULL`)
3497 
3498   Level: advanced
3499 
3500 .seealso: [](ch_dmbase), `DM`, `DMSubDomainHookAdd()`, `SNESFASGetInterpolation()`, `SNESFASGetInjection()`, `PetscObjectCompose()`, `PetscContainerCreate()`
3501 @*/
3502 PetscErrorCode DMSubDomainHookRemove(DM global, PetscErrorCode (*ddhook)(DM, DM, void *), PetscErrorCode (*restricthook)(DM, VecScatter, VecScatter, DM, void *), void *ctx)
3503 {
3504   DMSubDomainHookLink link, *p;
3505 
3506   PetscFunctionBegin;
3507   PetscValidHeaderSpecific(global, DM_CLASSID, 1);
3508   for (p = &global->subdomainhook; *p; p = &(*p)->next) { /* Search the list of current hooks */
3509     if ((*p)->ddhook == ddhook && (*p)->restricthook == restricthook && (*p)->ctx == ctx) {
3510       link = *p;
3511       *p   = link->next;
3512       PetscCall(PetscFree(link));
3513       break;
3514     }
3515   }
3516   PetscFunctionReturn(PETSC_SUCCESS);
3517 }
3518 
3519 /*@
3520   DMSubDomainRestrict - restricts user-defined problem data to a block `DM` by running hooks registered by `DMSubDomainHookAdd()`
3521 
3522   Collective if any hooks are
3523 
3524   Input Parameters:
3525 + global   - The global `DM` to use as a base
3526 . oscatter - The scatter from domain global vector filling subdomain global vector with overlap
3527 . gscatter - The scatter from domain global vector filling subdomain local vector with ghosts
3528 - subdm    - The subdomain `DM` to update
3529 
3530   Level: developer
3531 
3532 .seealso: [](ch_dmbase), `DM`, `DMCoarsenHookAdd()`, `MatRestrict()`
3533 @*/
3534 PetscErrorCode DMSubDomainRestrict(DM global, VecScatter oscatter, VecScatter gscatter, DM subdm)
3535 {
3536   DMSubDomainHookLink link;
3537 
3538   PetscFunctionBegin;
3539   for (link = global->subdomainhook; link; link = link->next) {
3540     if (link->restricthook) PetscCall((*link->restricthook)(global, oscatter, gscatter, subdm, link->ctx));
3541   }
3542   PetscFunctionReturn(PETSC_SUCCESS);
3543 }
3544 
3545 /*@
3546   DMGetCoarsenLevel - Gets the number of coarsenings that have generated this `DM`.
3547 
3548   Not Collective
3549 
3550   Input Parameter:
3551 . dm - the `DM` object
3552 
3553   Output Parameter:
3554 . level - number of coarsenings
3555 
3556   Level: developer
3557 
3558 .seealso: [](ch_dmbase), `DM`, `DMCoarsen()`, `DMSetCoarsenLevel()`, `DMGetRefineLevel()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`
3559 @*/
3560 PetscErrorCode DMGetCoarsenLevel(DM dm, PetscInt *level)
3561 {
3562   PetscFunctionBegin;
3563   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
3564   PetscAssertPointer(level, 2);
3565   *level = dm->leveldown;
3566   PetscFunctionReturn(PETSC_SUCCESS);
3567 }
3568 
3569 /*@
3570   DMSetCoarsenLevel - Sets the number of coarsenings that have generated this `DM`.
3571 
3572   Collective
3573 
3574   Input Parameters:
3575 + dm    - the `DM` object
3576 - level - number of coarsenings
3577 
3578   Level: developer
3579 
3580   Note:
3581   This is rarely used directly, the information is automatically set when a `DM` is created with `DMCoarsen()`
3582 
3583 .seealso: [](ch_dmbase), `DM`, `DMCoarsen()`, `DMGetCoarsenLevel()`, `DMGetRefineLevel()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`
3584 @*/
3585 PetscErrorCode DMSetCoarsenLevel(DM dm, PetscInt level)
3586 {
3587   PetscFunctionBegin;
3588   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
3589   dm->leveldown = level;
3590   PetscFunctionReturn(PETSC_SUCCESS);
3591 }
3592 
3593 /*@C
3594   DMRefineHierarchy - Refines a `DM` object, all levels at once
3595 
3596   Collective
3597 
3598   Input Parameters:
3599 + dm      - the `DM` object
3600 - nlevels - the number of levels of refinement
3601 
3602   Output Parameter:
3603 . dmf - the refined `DM` hierarchy
3604 
3605   Level: developer
3606 
3607 .seealso: [](ch_dmbase), `DM`, `DMCoarsen()`, `DMCoarsenHierarchy()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`
3608 @*/
3609 PetscErrorCode DMRefineHierarchy(DM dm, PetscInt nlevels, DM dmf[])
3610 {
3611   PetscFunctionBegin;
3612   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
3613   PetscCheck(nlevels >= 0, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "nlevels cannot be negative");
3614   if (nlevels == 0) PetscFunctionReturn(PETSC_SUCCESS);
3615   PetscAssertPointer(dmf, 3);
3616   if (dm->ops->refine && !dm->ops->refinehierarchy) {
3617     PetscInt i;
3618 
3619     PetscCall(DMRefine(dm, PetscObjectComm((PetscObject)dm), &dmf[0]));
3620     for (i = 1; i < nlevels; i++) PetscCall(DMRefine(dmf[i - 1], PetscObjectComm((PetscObject)dm), &dmf[i]));
3621   } else PetscUseTypeMethod(dm, refinehierarchy, nlevels, dmf);
3622   PetscFunctionReturn(PETSC_SUCCESS);
3623 }
3624 
3625 /*@C
3626   DMCoarsenHierarchy - Coarsens a `DM` object, all levels at once
3627 
3628   Collective
3629 
3630   Input Parameters:
3631 + dm      - the `DM` object
3632 - nlevels - the number of levels of coarsening
3633 
3634   Output Parameter:
3635 . dmc - the coarsened `DM` hierarchy
3636 
3637   Level: developer
3638 
3639 .seealso: [](ch_dmbase), `DM`, `DMCoarsen()`, `DMRefineHierarchy()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`
3640 @*/
3641 PetscErrorCode DMCoarsenHierarchy(DM dm, PetscInt nlevels, DM dmc[])
3642 {
3643   PetscFunctionBegin;
3644   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
3645   PetscCheck(nlevels >= 0, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "nlevels cannot be negative");
3646   if (nlevels == 0) PetscFunctionReturn(PETSC_SUCCESS);
3647   PetscAssertPointer(dmc, 3);
3648   if (dm->ops->coarsen && !dm->ops->coarsenhierarchy) {
3649     PetscInt i;
3650 
3651     PetscCall(DMCoarsen(dm, PetscObjectComm((PetscObject)dm), &dmc[0]));
3652     for (i = 1; i < nlevels; i++) PetscCall(DMCoarsen(dmc[i - 1], PetscObjectComm((PetscObject)dm), &dmc[i]));
3653   } else PetscUseTypeMethod(dm, coarsenhierarchy, nlevels, dmc);
3654   PetscFunctionReturn(PETSC_SUCCESS);
3655 }
3656 
3657 /*@C
3658   DMSetApplicationContextDestroy - Sets a user function that will be called to destroy the application context when the `DM` is destroyed
3659 
3660   Logically Collective if the function is collective
3661 
3662   Input Parameters:
3663 + dm      - the `DM` object
3664 - destroy - the destroy function
3665 
3666   Level: intermediate
3667 
3668 .seealso: [](ch_dmbase), `DM`, `DMSetApplicationContext()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMGetApplicationContext()`
3669 @*/
3670 PetscErrorCode DMSetApplicationContextDestroy(DM dm, PetscErrorCode (*destroy)(void **))
3671 {
3672   PetscFunctionBegin;
3673   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
3674   dm->ctxdestroy = destroy;
3675   PetscFunctionReturn(PETSC_SUCCESS);
3676 }
3677 
3678 /*@
3679   DMSetApplicationContext - Set a user context into a `DM` object
3680 
3681   Not Collective
3682 
3683   Input Parameters:
3684 + dm  - the `DM` object
3685 - ctx - the user context
3686 
3687   Level: intermediate
3688 
3689   Note:
3690   A user context is a way to pass problem specific information that is accessible whenever the `DM` is available
3691 
3692 .seealso: [](ch_dmbase), `DM`, `DMGetApplicationContext()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`
3693 @*/
3694 PetscErrorCode DMSetApplicationContext(DM dm, void *ctx)
3695 {
3696   PetscFunctionBegin;
3697   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
3698   dm->ctx = ctx;
3699   PetscFunctionReturn(PETSC_SUCCESS);
3700 }
3701 
3702 /*@
3703   DMGetApplicationContext - Gets a user context from a `DM` object
3704 
3705   Not Collective
3706 
3707   Input Parameter:
3708 . dm - the `DM` object
3709 
3710   Output Parameter:
3711 . ctx - the user context
3712 
3713   Level: intermediate
3714 
3715   Note:
3716   A user context is a way to pass problem specific information that is accessible whenever the `DM` is available
3717 
3718 .seealso: [](ch_dmbase), `DM`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`
3719 @*/
3720 PetscErrorCode DMGetApplicationContext(DM dm, void *ctx)
3721 {
3722   PetscFunctionBegin;
3723   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
3724   *(void **)ctx = dm->ctx;
3725   PetscFunctionReturn(PETSC_SUCCESS);
3726 }
3727 
3728 /*@C
3729   DMSetVariableBounds - sets a function to compute the lower and upper bound vectors for `SNESVI`.
3730 
3731   Logically Collective
3732 
3733   Input Parameters:
3734 + dm - the DM object
3735 - f  - the function that computes variable bounds used by SNESVI (use `NULL` to cancel a previous function that was set)
3736 
3737   Level: intermediate
3738 
3739 .seealso: [](ch_dmbase), `DM`, `DMComputeVariableBounds()`, `DMHasVariableBounds()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMGetApplicationContext()`,
3740          `DMSetJacobian()`
3741 @*/
3742 PetscErrorCode DMSetVariableBounds(DM dm, PetscErrorCode (*f)(DM, Vec, Vec))
3743 {
3744   PetscFunctionBegin;
3745   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
3746   dm->ops->computevariablebounds = f;
3747   PetscFunctionReturn(PETSC_SUCCESS);
3748 }
3749 
3750 /*@
3751   DMHasVariableBounds - does the `DM` object have a variable bounds function?
3752 
3753   Not Collective
3754 
3755   Input Parameter:
3756 . dm - the `DM` object to destroy
3757 
3758   Output Parameter:
3759 . flg - `PETSC_TRUE` if the variable bounds function exists
3760 
3761   Level: developer
3762 
3763 .seealso: [](ch_dmbase), `DM`, `DMComputeVariableBounds()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMGetApplicationContext()`
3764 @*/
3765 PetscErrorCode DMHasVariableBounds(DM dm, PetscBool *flg)
3766 {
3767   PetscFunctionBegin;
3768   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
3769   PetscAssertPointer(flg, 2);
3770   *flg = (dm->ops->computevariablebounds) ? PETSC_TRUE : PETSC_FALSE;
3771   PetscFunctionReturn(PETSC_SUCCESS);
3772 }
3773 
3774 /*@C
3775   DMComputeVariableBounds - compute variable bounds used by `SNESVI`.
3776 
3777   Logically Collective
3778 
3779   Input Parameter:
3780 . dm - the `DM` object
3781 
3782   Output Parameters:
3783 + xl - lower bound
3784 - xu - upper bound
3785 
3786   Level: advanced
3787 
3788   Note:
3789   This is generally not called by users. It calls the function provided by the user with DMSetVariableBounds()
3790 
3791 .seealso: [](ch_dmbase), `DM`, `DMHasVariableBounds()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMGetApplicationContext()`
3792 @*/
3793 PetscErrorCode DMComputeVariableBounds(DM dm, Vec xl, Vec xu)
3794 {
3795   PetscFunctionBegin;
3796   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
3797   PetscValidHeaderSpecific(xl, VEC_CLASSID, 2);
3798   PetscValidHeaderSpecific(xu, VEC_CLASSID, 3);
3799   PetscUseTypeMethod(dm, computevariablebounds, xl, xu);
3800   PetscFunctionReturn(PETSC_SUCCESS);
3801 }
3802 
3803 /*@
3804   DMHasColoring - does the `DM` object have a method of providing a coloring?
3805 
3806   Not Collective
3807 
3808   Input Parameter:
3809 . dm - the DM object
3810 
3811   Output Parameter:
3812 . flg - `PETSC_TRUE` if the `DM` has facilities for `DMCreateColoring()`.
3813 
3814   Level: developer
3815 
3816 .seealso: [](ch_dmbase), `DM`, `DMCreateColoring()`
3817 @*/
3818 PetscErrorCode DMHasColoring(DM dm, PetscBool *flg)
3819 {
3820   PetscFunctionBegin;
3821   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
3822   PetscAssertPointer(flg, 2);
3823   *flg = (dm->ops->getcoloring) ? PETSC_TRUE : PETSC_FALSE;
3824   PetscFunctionReturn(PETSC_SUCCESS);
3825 }
3826 
3827 /*@
3828   DMHasCreateRestriction - does the `DM` object have a method of providing a restriction?
3829 
3830   Not Collective
3831 
3832   Input Parameter:
3833 . dm - the `DM` object
3834 
3835   Output Parameter:
3836 . flg - `PETSC_TRUE` if the `DM` has facilities for `DMCreateRestriction()`.
3837 
3838   Level: developer
3839 
3840 .seealso: [](ch_dmbase), `DM`, `DMCreateRestriction()`, `DMHasCreateInterpolation()`, `DMHasCreateInjection()`
3841 @*/
3842 PetscErrorCode DMHasCreateRestriction(DM dm, PetscBool *flg)
3843 {
3844   PetscFunctionBegin;
3845   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
3846   PetscAssertPointer(flg, 2);
3847   *flg = (dm->ops->createrestriction) ? PETSC_TRUE : PETSC_FALSE;
3848   PetscFunctionReturn(PETSC_SUCCESS);
3849 }
3850 
3851 /*@
3852   DMHasCreateInjection - does the `DM` object have a method of providing an injection?
3853 
3854   Not Collective
3855 
3856   Input Parameter:
3857 . dm - the `DM` object
3858 
3859   Output Parameter:
3860 . flg - `PETSC_TRUE` if the `DM` has facilities for `DMCreateInjection()`.
3861 
3862   Level: developer
3863 
3864 .seealso: [](ch_dmbase), `DM`, `DMCreateInjection()`, `DMHasCreateRestriction()`, `DMHasCreateInterpolation()`
3865 @*/
3866 PetscErrorCode DMHasCreateInjection(DM dm, PetscBool *flg)
3867 {
3868   PetscFunctionBegin;
3869   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
3870   PetscAssertPointer(flg, 2);
3871   if (dm->ops->hascreateinjection) PetscUseTypeMethod(dm, hascreateinjection, flg);
3872   else *flg = (dm->ops->createinjection) ? PETSC_TRUE : PETSC_FALSE;
3873   PetscFunctionReturn(PETSC_SUCCESS);
3874 }
3875 
3876 PetscFunctionList DMList              = NULL;
3877 PetscBool         DMRegisterAllCalled = PETSC_FALSE;
3878 
3879 /*@C
3880   DMSetType - Builds a `DM`, for a particular `DM` implementation.
3881 
3882   Collective
3883 
3884   Input Parameters:
3885 + dm     - The `DM` object
3886 - method - The name of the `DMType`, for example `DMDA`, `DMPLEX`
3887 
3888   Options Database Key:
3889 . -dm_type <type> - Sets the `DM` type; use -help for a list of available types
3890 
3891   Level: intermediate
3892 
3893   Note:
3894   Of the `DM` is constructed by directly calling a function to construct a particular `DM`, for example, `DMDACreate2d()` or `DMPlexCreateBoxMesh()`
3895 
3896 .seealso: [](ch_dmbase), `DM`, `DMType`, `DMDA`, `DMPLEX`, `DMGetType()`, `DMCreate()`, `DMDACreate2d()`
3897 @*/
3898 PetscErrorCode DMSetType(DM dm, DMType method)
3899 {
3900   PetscErrorCode (*r)(DM);
3901   PetscBool match;
3902 
3903   PetscFunctionBegin;
3904   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
3905   PetscCall(PetscObjectTypeCompare((PetscObject)dm, method, &match));
3906   if (match) PetscFunctionReturn(PETSC_SUCCESS);
3907 
3908   PetscCall(DMRegisterAll());
3909   PetscCall(PetscFunctionListFind(DMList, method, &r));
3910   PetscCheck(r, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_UNKNOWN_TYPE, "Unknown DM type: %s", method);
3911 
3912   PetscTryTypeMethod(dm, destroy);
3913   PetscCall(PetscMemzero(dm->ops, sizeof(*dm->ops)));
3914   PetscCall(PetscObjectChangeTypeName((PetscObject)dm, method));
3915   PetscCall((*r)(dm));
3916   PetscFunctionReturn(PETSC_SUCCESS);
3917 }
3918 
3919 /*@C
3920   DMGetType - Gets the `DM` type name (as a string) from the `DM`.
3921 
3922   Not Collective
3923 
3924   Input Parameter:
3925 . dm - The `DM`
3926 
3927   Output Parameter:
3928 . type - The `DMType` name
3929 
3930   Level: intermediate
3931 
3932 .seealso: [](ch_dmbase), `DM`, `DMType`, `DMDA`, `DMPLEX`, `DMSetType()`, `DMCreate()`
3933 @*/
3934 PetscErrorCode DMGetType(DM dm, DMType *type)
3935 {
3936   PetscFunctionBegin;
3937   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
3938   PetscAssertPointer(type, 2);
3939   PetscCall(DMRegisterAll());
3940   *type = ((PetscObject)dm)->type_name;
3941   PetscFunctionReturn(PETSC_SUCCESS);
3942 }
3943 
3944 /*@C
3945   DMConvert - Converts a `DM` to another `DM`, either of the same or different type.
3946 
3947   Collective
3948 
3949   Input Parameters:
3950 + dm      - the `DM`
3951 - newtype - new `DM` type (use "same" for the same type)
3952 
3953   Output Parameter:
3954 . M - pointer to new `DM`
3955 
3956   Level: intermediate
3957 
3958   Notes:
3959   Cannot be used to convert a sequential `DM` to a parallel or a parallel to sequential,
3960   the MPI communicator of the generated `DM` is always the same as the communicator
3961   of the input `DM`.
3962 
3963 .seealso: [](ch_dmbase), `DM`, `DMSetType()`, `DMCreate()`, `DMClone()`
3964 @*/
3965 PetscErrorCode DMConvert(DM dm, DMType newtype, DM *M)
3966 {
3967   DM        B;
3968   char      convname[256];
3969   PetscBool sametype /*, issame */;
3970 
3971   PetscFunctionBegin;
3972   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
3973   PetscValidType(dm, 1);
3974   PetscAssertPointer(M, 3);
3975   PetscCall(PetscObjectTypeCompare((PetscObject)dm, newtype, &sametype));
3976   /* PetscCall(PetscStrcmp(newtype, "same", &issame)); */
3977   if (sametype) {
3978     *M = dm;
3979     PetscCall(PetscObjectReference((PetscObject)dm));
3980     PetscFunctionReturn(PETSC_SUCCESS);
3981   } else {
3982     PetscErrorCode (*conv)(DM, DMType, DM *) = NULL;
3983 
3984     /*
3985        Order of precedence:
3986        1) See if a specialized converter is known to the current DM.
3987        2) See if a specialized converter is known to the desired DM class.
3988        3) See if a good general converter is registered for the desired class
3989        4) See if a good general converter is known for the current matrix.
3990        5) Use a really basic converter.
3991     */
3992 
3993     /* 1) See if a specialized converter is known to the current DM and the desired class */
3994     PetscCall(PetscStrncpy(convname, "DMConvert_", sizeof(convname)));
3995     PetscCall(PetscStrlcat(convname, ((PetscObject)dm)->type_name, sizeof(convname)));
3996     PetscCall(PetscStrlcat(convname, "_", sizeof(convname)));
3997     PetscCall(PetscStrlcat(convname, newtype, sizeof(convname)));
3998     PetscCall(PetscStrlcat(convname, "_C", sizeof(convname)));
3999     PetscCall(PetscObjectQueryFunction((PetscObject)dm, convname, &conv));
4000     if (conv) goto foundconv;
4001 
4002     /* 2)  See if a specialized converter is known to the desired DM class. */
4003     PetscCall(DMCreate(PetscObjectComm((PetscObject)dm), &B));
4004     PetscCall(DMSetType(B, newtype));
4005     PetscCall(PetscStrncpy(convname, "DMConvert_", sizeof(convname)));
4006     PetscCall(PetscStrlcat(convname, ((PetscObject)dm)->type_name, sizeof(convname)));
4007     PetscCall(PetscStrlcat(convname, "_", sizeof(convname)));
4008     PetscCall(PetscStrlcat(convname, newtype, sizeof(convname)));
4009     PetscCall(PetscStrlcat(convname, "_C", sizeof(convname)));
4010     PetscCall(PetscObjectQueryFunction((PetscObject)B, convname, &conv));
4011     if (conv) {
4012       PetscCall(DMDestroy(&B));
4013       goto foundconv;
4014     }
4015 
4016 #if 0
4017     /* 3) See if a good general converter is registered for the desired class */
4018     conv = B->ops->convertfrom;
4019     PetscCall(DMDestroy(&B));
4020     if (conv) goto foundconv;
4021 
4022     /* 4) See if a good general converter is known for the current matrix */
4023     if (dm->ops->convert) {
4024       conv = dm->ops->convert;
4025     }
4026     if (conv) goto foundconv;
4027 #endif
4028 
4029     /* 5) Use a really basic converter. */
4030     SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_SUP, "No conversion possible between DM types %s and %s", ((PetscObject)dm)->type_name, newtype);
4031 
4032   foundconv:
4033     PetscCall(PetscLogEventBegin(DM_Convert, dm, 0, 0, 0));
4034     PetscCall((*conv)(dm, newtype, M));
4035     /* Things that are independent of DM type: We should consult DMClone() here */
4036     {
4037       const PetscReal *maxCell, *Lstart, *L;
4038 
4039       PetscCall(DMGetPeriodicity(dm, &maxCell, &Lstart, &L));
4040       PetscCall(DMSetPeriodicity(*M, maxCell, Lstart, L));
4041       (*M)->prealloc_only = dm->prealloc_only;
4042       PetscCall(PetscFree((*M)->vectype));
4043       PetscCall(PetscStrallocpy(dm->vectype, (char **)&(*M)->vectype));
4044       PetscCall(PetscFree((*M)->mattype));
4045       PetscCall(PetscStrallocpy(dm->mattype, (char **)&(*M)->mattype));
4046     }
4047     PetscCall(PetscLogEventEnd(DM_Convert, dm, 0, 0, 0));
4048   }
4049   PetscCall(PetscObjectStateIncrease((PetscObject)*M));
4050   PetscFunctionReturn(PETSC_SUCCESS);
4051 }
4052 
4053 /*--------------------------------------------------------------------------------------------------------------------*/
4054 
4055 /*@C
4056   DMRegister -  Adds a new `DM` type implementation
4057 
4058   Not Collective
4059 
4060   Input Parameters:
4061 + sname    - The name of a new user-defined creation routine
4062 - function - The creation routine itself
4063 
4064   Level: advanced
4065 
4066   Notes:
4067   `DMRegister()` may be called multiple times to add several user-defined `DM`s
4068 
4069   Example Usage:
4070 .vb
4071     DMRegister("my_da", MyDMCreate);
4072 .ve
4073 
4074   Then, your `DM` type can be chosen with the procedural interface via
4075 .vb
4076     DMCreate(MPI_Comm, DM *);
4077     DMSetType(DM,"my_da");
4078 .ve
4079   or at runtime via the option
4080 .vb
4081     -da_type my_da
4082 .ve
4083 
4084 .seealso: [](ch_dmbase), `DM`, `DMType`, `DMSetType()`, `DMRegisterAll()`, `DMRegisterDestroy()`
4085 @*/
4086 PetscErrorCode DMRegister(const char sname[], PetscErrorCode (*function)(DM))
4087 {
4088   PetscFunctionBegin;
4089   PetscCall(DMInitializePackage());
4090   PetscCall(PetscFunctionListAdd(&DMList, sname, function));
4091   PetscFunctionReturn(PETSC_SUCCESS);
4092 }
4093 
4094 /*@C
4095   DMLoad - Loads a DM that has been stored in binary  with `DMView()`.
4096 
4097   Collective
4098 
4099   Input Parameters:
4100 + newdm  - the newly loaded `DM`, this needs to have been created with `DMCreate()` or
4101            some related function before a call to `DMLoad()`.
4102 - viewer - binary file viewer, obtained from `PetscViewerBinaryOpen()` or
4103            `PETSCVIEWERHDF5` file viewer, obtained from `PetscViewerHDF5Open()`
4104 
4105   Level: intermediate
4106 
4107   Notes:
4108   The type is determined by the data in the file, any type set into the DM before this call is ignored.
4109 
4110   Using `PETSCVIEWERHDF5` type with `PETSC_VIEWER_HDF5_PETSC` format, one can save multiple `DMPLEX`
4111   meshes in a single HDF5 file. This in turn requires one to name the `DMPLEX` object with `PetscObjectSetName()`
4112   before saving it with `DMView()` and before loading it with `DMLoad()` for identification of the mesh object.
4113 
4114 .seealso: [](ch_dmbase), `DM`, `PetscViewerBinaryOpen()`, `DMView()`, `MatLoad()`, `VecLoad()`
4115 @*/
4116 PetscErrorCode DMLoad(DM newdm, PetscViewer viewer)
4117 {
4118   PetscBool isbinary, ishdf5;
4119 
4120   PetscFunctionBegin;
4121   PetscValidHeaderSpecific(newdm, DM_CLASSID, 1);
4122   PetscValidHeaderSpecific(viewer, PETSC_VIEWER_CLASSID, 2);
4123   PetscCall(PetscViewerCheckReadable(viewer));
4124   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary));
4125   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERHDF5, &ishdf5));
4126   PetscCall(PetscLogEventBegin(DM_Load, viewer, 0, 0, 0));
4127   if (isbinary) {
4128     PetscInt classid;
4129     char     type[256];
4130 
4131     PetscCall(PetscViewerBinaryRead(viewer, &classid, 1, NULL, PETSC_INT));
4132     PetscCheck(classid == DM_FILE_CLASSID, PetscObjectComm((PetscObject)newdm), PETSC_ERR_ARG_WRONG, "Not DM next in file, classid found %d", (int)classid);
4133     PetscCall(PetscViewerBinaryRead(viewer, type, 256, NULL, PETSC_CHAR));
4134     PetscCall(DMSetType(newdm, type));
4135     PetscTryTypeMethod(newdm, load, viewer);
4136   } else if (ishdf5) {
4137     PetscTryTypeMethod(newdm, load, viewer);
4138   } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Invalid viewer; open viewer with PetscViewerBinaryOpen() or PetscViewerHDF5Open()");
4139   PetscCall(PetscLogEventEnd(DM_Load, viewer, 0, 0, 0));
4140   PetscFunctionReturn(PETSC_SUCCESS);
4141 }
4142 
4143 /******************************** FEM Support **********************************/
4144 
4145 PetscErrorCode DMPrintCellIndices(PetscInt c, const char name[], PetscInt len, const PetscInt x[])
4146 {
4147   PetscInt f;
4148 
4149   PetscFunctionBegin;
4150   PetscCall(PetscPrintf(PETSC_COMM_SELF, "Cell %" PetscInt_FMT " Element %s\n", c, name));
4151   for (f = 0; f < len; ++f) PetscCall(PetscPrintf(PETSC_COMM_SELF, "  | %" PetscInt_FMT " |\n", x[f]));
4152   PetscFunctionReturn(PETSC_SUCCESS);
4153 }
4154 
4155 PetscErrorCode DMPrintCellVector(PetscInt c, const char name[], PetscInt len, const PetscScalar x[])
4156 {
4157   PetscInt f;
4158 
4159   PetscFunctionBegin;
4160   PetscCall(PetscPrintf(PETSC_COMM_SELF, "Cell %" PetscInt_FMT " Element %s\n", c, name));
4161   for (f = 0; f < len; ++f) PetscCall(PetscPrintf(PETSC_COMM_SELF, "  | %g |\n", (double)PetscRealPart(x[f])));
4162   PetscFunctionReturn(PETSC_SUCCESS);
4163 }
4164 
4165 PetscErrorCode DMPrintCellVectorReal(PetscInt c, const char name[], PetscInt len, const PetscReal x[])
4166 {
4167   PetscInt f;
4168 
4169   PetscFunctionBegin;
4170   PetscCall(PetscPrintf(PETSC_COMM_SELF, "Cell %" PetscInt_FMT " Element %s\n", c, name));
4171   for (f = 0; f < len; ++f) PetscCall(PetscPrintf(PETSC_COMM_SELF, "  | %g |\n", (double)x[f]));
4172   PetscFunctionReturn(PETSC_SUCCESS);
4173 }
4174 
4175 PetscErrorCode DMPrintCellMatrix(PetscInt c, const char name[], PetscInt rows, PetscInt cols, const PetscScalar A[])
4176 {
4177   PetscInt f, g;
4178 
4179   PetscFunctionBegin;
4180   PetscCall(PetscPrintf(PETSC_COMM_SELF, "Cell %" PetscInt_FMT " Element %s\n", c, name));
4181   for (f = 0; f < rows; ++f) {
4182     PetscCall(PetscPrintf(PETSC_COMM_SELF, "  |"));
4183     for (g = 0; g < cols; ++g) PetscCall(PetscPrintf(PETSC_COMM_SELF, " % 9.5g", (double)PetscRealPart(A[f * cols + g])));
4184     PetscCall(PetscPrintf(PETSC_COMM_SELF, " |\n"));
4185   }
4186   PetscFunctionReturn(PETSC_SUCCESS);
4187 }
4188 
4189 PetscErrorCode DMPrintLocalVec(DM dm, const char name[], PetscReal tol, Vec X)
4190 {
4191   PetscInt           localSize, bs;
4192   PetscMPIInt        size;
4193   Vec                x, xglob;
4194   const PetscScalar *xarray;
4195 
4196   PetscFunctionBegin;
4197   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)dm), &size));
4198   PetscCall(VecDuplicate(X, &x));
4199   PetscCall(VecCopy(X, x));
4200   PetscCall(VecFilter(x, tol));
4201   PetscCall(PetscPrintf(PetscObjectComm((PetscObject)dm), "%s:\n", name));
4202   if (size > 1) {
4203     PetscCall(VecGetLocalSize(x, &localSize));
4204     PetscCall(VecGetArrayRead(x, &xarray));
4205     PetscCall(VecGetBlockSize(x, &bs));
4206     PetscCall(VecCreateMPIWithArray(PetscObjectComm((PetscObject)dm), bs, localSize, PETSC_DETERMINE, xarray, &xglob));
4207   } else {
4208     xglob = x;
4209   }
4210   PetscCall(VecView(xglob, PETSC_VIEWER_STDOUT_(PetscObjectComm((PetscObject)dm))));
4211   if (size > 1) {
4212     PetscCall(VecDestroy(&xglob));
4213     PetscCall(VecRestoreArrayRead(x, &xarray));
4214   }
4215   PetscCall(VecDestroy(&x));
4216   PetscFunctionReturn(PETSC_SUCCESS);
4217 }
4218 
4219 /*@
4220   DMGetSection - Get the `PetscSection` encoding the local data layout for the `DM`.   This is equivalent to `DMGetLocalSection()`. Deprecated in v3.12
4221 
4222   Input Parameter:
4223 . dm - The `DM`
4224 
4225   Output Parameter:
4226 . section - The `PetscSection`
4227 
4228   Options Database Key:
4229 . -dm_petscsection_view - View the `PetscSection` created by the `DM`
4230 
4231   Level: advanced
4232 
4233   Notes:
4234   Use `DMGetLocalSection()` in new code.
4235 
4236   This gets a borrowed reference, so the user should not destroy this `PetscSection`.
4237 
4238 .seealso: [](ch_dmbase), `DM`, `DMGetLocalSection()`, `DMSetLocalSection()`, `DMGetGlobalSection()`
4239 @*/
4240 PetscErrorCode DMGetSection(DM dm, PetscSection *section)
4241 {
4242   PetscFunctionBegin;
4243   PetscCall(DMGetLocalSection(dm, section));
4244   PetscFunctionReturn(PETSC_SUCCESS);
4245 }
4246 
4247 /*@
4248   DMGetLocalSection - Get the `PetscSection` encoding the local data layout for the `DM`.
4249 
4250   Input Parameter:
4251 . dm - The `DM`
4252 
4253   Output Parameter:
4254 . section - The `PetscSection`
4255 
4256   Options Database Key:
4257 . -dm_petscsection_view - View the section created by the `DM`
4258 
4259   Level: intermediate
4260 
4261   Note:
4262   This gets a borrowed reference, so the user should not destroy this `PetscSection`.
4263 
4264 .seealso: [](ch_dmbase), `DM`, `DMSetLocalSection()`, `DMGetGlobalSection()`
4265 @*/
4266 PetscErrorCode DMGetLocalSection(DM dm, PetscSection *section)
4267 {
4268   PetscFunctionBegin;
4269   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
4270   PetscAssertPointer(section, 2);
4271   if (!dm->localSection && dm->ops->createlocalsection) {
4272     PetscInt d;
4273 
4274     if (dm->setfromoptionscalled) {
4275       PetscObject       obj = (PetscObject)dm;
4276       PetscViewer       viewer;
4277       PetscViewerFormat format;
4278       PetscBool         flg;
4279 
4280       PetscCall(PetscOptionsGetViewer(PetscObjectComm(obj), obj->options, obj->prefix, "-dm_petscds_view", &viewer, &format, &flg));
4281       if (flg) PetscCall(PetscViewerPushFormat(viewer, format));
4282       for (d = 0; d < dm->Nds; ++d) {
4283         PetscCall(PetscDSSetFromOptions(dm->probs[d].ds));
4284         if (flg) PetscCall(PetscDSView(dm->probs[d].ds, viewer));
4285       }
4286       if (flg) {
4287         PetscCall(PetscViewerFlush(viewer));
4288         PetscCall(PetscViewerPopFormat(viewer));
4289         PetscCall(PetscOptionsRestoreViewer(&viewer));
4290       }
4291     }
4292     PetscUseTypeMethod(dm, createlocalsection);
4293     if (dm->localSection) PetscCall(PetscObjectViewFromOptions((PetscObject)dm->localSection, NULL, "-dm_petscsection_view"));
4294   }
4295   *section = dm->localSection;
4296   PetscFunctionReturn(PETSC_SUCCESS);
4297 }
4298 
4299 /*@
4300   DMSetSection - Set the `PetscSection` encoding the local data layout for the `DM`.  This is equivalent to `DMSetLocalSection()`. Deprecated in v3.12
4301 
4302   Input Parameters:
4303 + dm      - The `DM`
4304 - section - The `PetscSection`
4305 
4306   Level: advanced
4307 
4308   Notes:
4309   Use `DMSetLocalSection()` in new code.
4310 
4311   Any existing `PetscSection` will be destroyed
4312 
4313 .seealso: [](ch_dmbase), `DM`, `DMSetLocalSection()`, `DMGetLocalSection()`, `DMSetGlobalSection()`
4314 @*/
4315 PetscErrorCode DMSetSection(DM dm, PetscSection section)
4316 {
4317   PetscFunctionBegin;
4318   PetscCall(DMSetLocalSection(dm, section));
4319   PetscFunctionReturn(PETSC_SUCCESS);
4320 }
4321 
4322 /*@
4323   DMSetLocalSection - Set the `PetscSection` encoding the local data layout for the `DM`.
4324 
4325   Input Parameters:
4326 + dm      - The `DM`
4327 - section - The `PetscSection`
4328 
4329   Level: intermediate
4330 
4331   Note:
4332   Any existing Section will be destroyed
4333 
4334 .seealso: [](ch_dmbase), `DM`, `PetscSection`, `DMGetLocalSection()`, `DMSetGlobalSection()`
4335 @*/
4336 PetscErrorCode DMSetLocalSection(DM dm, PetscSection section)
4337 {
4338   PetscInt numFields = 0;
4339   PetscInt f;
4340 
4341   PetscFunctionBegin;
4342   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
4343   if (section) PetscValidHeaderSpecific(section, PETSC_SECTION_CLASSID, 2);
4344   PetscCall(PetscObjectReference((PetscObject)section));
4345   PetscCall(PetscSectionDestroy(&dm->localSection));
4346   dm->localSection = section;
4347   if (section) PetscCall(PetscSectionGetNumFields(dm->localSection, &numFields));
4348   if (numFields) {
4349     PetscCall(DMSetNumFields(dm, numFields));
4350     for (f = 0; f < numFields; ++f) {
4351       PetscObject disc;
4352       const char *name;
4353 
4354       PetscCall(PetscSectionGetFieldName(dm->localSection, f, &name));
4355       PetscCall(DMGetField(dm, f, NULL, &disc));
4356       PetscCall(PetscObjectSetName(disc, name));
4357     }
4358   }
4359   /* The global section and the SectionSF will be rebuilt
4360      in the next call to DMGetGlobalSection() and DMGetSectionSF(). */
4361   PetscCall(PetscSectionDestroy(&dm->globalSection));
4362   PetscCall(PetscSFDestroy(&dm->sectionSF));
4363 
4364   /* Clear scratch vectors */
4365   PetscCall(DMClearGlobalVectors(dm));
4366   PetscCall(DMClearLocalVectors(dm));
4367   PetscCall(DMClearNamedGlobalVectors(dm));
4368   PetscCall(DMClearNamedLocalVectors(dm));
4369   PetscFunctionReturn(PETSC_SUCCESS);
4370 }
4371 
4372 /*@C
4373   DMCreateSectionPermutation - Create a permutation of the `PetscSection` chart and optionally a blokc structure.
4374 
4375   Input Parameter:
4376 . dm - The `DM`
4377 
4378   Output Parameter:
4379 + perm        - A permutation of the mesh points in the chart
4380 - blockStarts - A high bit is set for the point that begins every block, or NULL for default blocking
4381 
4382   Level: developer
4383 
4384 .seealso: [](ch_dmbase), `DM`, `PetscSection`, `DMGetLocalSection()`, `DMGetGlobalSection()`
4385 @*/
4386 PetscErrorCode DMCreateSectionPermutation(DM dm, IS *perm, PetscBT *blockStarts)
4387 {
4388   PetscFunctionBegin;
4389   *perm        = NULL;
4390   *blockStarts = NULL;
4391   PetscTryTypeMethod(dm, createsectionpermutation, perm, blockStarts);
4392   PetscFunctionReturn(PETSC_SUCCESS);
4393 }
4394 
4395 /*@
4396   DMGetDefaultConstraints - Get the `PetscSection` and `Mat` that specify the local constraint interpolation. See `DMSetDefaultConstraints()` for a description of the purpose of constraint interpolation.
4397 
4398   not Collective
4399 
4400   Input Parameter:
4401 . dm - The `DM`
4402 
4403   Output Parameters:
4404 + section - The `PetscSection` describing the range of the constraint matrix: relates rows of the constraint matrix to dofs of the default section.  Returns `NULL` if there are no local constraints.
4405 . mat     - The `Mat` that interpolates local constraints: its width should be the layout size of the default section.  Returns `NULL` if there are no local constraints.
4406 - bias    - Vector containing bias to be added to constrained dofs
4407 
4408   Level: advanced
4409 
4410   Note:
4411   This gets borrowed references, so the user should not destroy the `PetscSection`, `Mat`, or `Vec`.
4412 
4413 .seealso: [](ch_dmbase), `DM`, `DMSetDefaultConstraints()`
4414 @*/
4415 PetscErrorCode DMGetDefaultConstraints(DM dm, PetscSection *section, Mat *mat, Vec *bias)
4416 {
4417   PetscFunctionBegin;
4418   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
4419   if (!dm->defaultConstraint.section && !dm->defaultConstraint.mat && dm->ops->createdefaultconstraints) PetscUseTypeMethod(dm, createdefaultconstraints);
4420   if (section) *section = dm->defaultConstraint.section;
4421   if (mat) *mat = dm->defaultConstraint.mat;
4422   if (bias) *bias = dm->defaultConstraint.bias;
4423   PetscFunctionReturn(PETSC_SUCCESS);
4424 }
4425 
4426 /*@
4427   DMSetDefaultConstraints - Set the `PetscSection` and `Mat` that specify the local constraint interpolation.
4428 
4429   Collective
4430 
4431   Input Parameters:
4432 + dm      - The `DM`
4433 . section - The `PetscSection` describing the range of the constraint matrix: relates rows of the constraint matrix to dofs of the default section.  Must have a local communicator (`PETSC_COMM_SELF` or derivative).
4434 . mat     - The `Mat` that interpolates local constraints: its width should be the layout size of the default section:  `NULL` indicates no constraints.  Must have a local communicator (`PETSC_COMM_SELF` or derivative).
4435 - bias    - A bias vector to be added to constrained values in the local vector.  `NULL` indicates no bias.  Must have a local communicator (`PETSC_COMM_SELF` or derivative).
4436 
4437   Level: advanced
4438 
4439   Notes:
4440   If a constraint matrix is specified, then it is applied during `DMGlobalToLocalEnd()` when mode is `INSERT_VALUES`, `INSERT_BC_VALUES`, or `INSERT_ALL_VALUES`.  Without a constraint matrix, the local vector l returned by `DMGlobalToLocalEnd()` contains values that have been scattered from a global vector without modification; with a constraint matrix A, l is modified by computing c = A * l + bias, l[s[i]] = c[i], where the scatter s is defined by the `PetscSection` returned by `DMGetDefaultConstraints()`.
4441 
4442   If a constraint matrix is specified, then its adjoint is applied during `DMLocalToGlobalBegin()` when mode is `ADD_VALUES`, `ADD_BC_VALUES`, or `ADD_ALL_VALUES`.  Without a constraint matrix, the local vector l is accumulated into a global vector without modification; with a constraint matrix A, l is first modified by computing c[i] = l[s[i]], l[s[i]] = 0, l = l + A'*c, which is the adjoint of the operation described above.  Any bias, if specified, is ignored when accumulating.
4443 
4444   This increments the references of the `PetscSection`, `Mat`, and `Vec`, so they user can destroy them.
4445 
4446 .seealso: [](ch_dmbase), `DM`, `DMGetDefaultConstraints()`
4447 @*/
4448 PetscErrorCode DMSetDefaultConstraints(DM dm, PetscSection section, Mat mat, Vec bias)
4449 {
4450   PetscMPIInt result;
4451 
4452   PetscFunctionBegin;
4453   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
4454   if (section) {
4455     PetscValidHeaderSpecific(section, PETSC_SECTION_CLASSID, 2);
4456     PetscCallMPI(MPI_Comm_compare(PETSC_COMM_SELF, PetscObjectComm((PetscObject)section), &result));
4457     PetscCheck(result == MPI_CONGRUENT || result == MPI_IDENT, PETSC_COMM_SELF, PETSC_ERR_ARG_NOTSAMECOMM, "constraint section must have local communicator");
4458   }
4459   if (mat) {
4460     PetscValidHeaderSpecific(mat, MAT_CLASSID, 3);
4461     PetscCallMPI(MPI_Comm_compare(PETSC_COMM_SELF, PetscObjectComm((PetscObject)mat), &result));
4462     PetscCheck(result == MPI_CONGRUENT || result == MPI_IDENT, PETSC_COMM_SELF, PETSC_ERR_ARG_NOTSAMECOMM, "constraint matrix must have local communicator");
4463   }
4464   if (bias) {
4465     PetscValidHeaderSpecific(bias, VEC_CLASSID, 4);
4466     PetscCallMPI(MPI_Comm_compare(PETSC_COMM_SELF, PetscObjectComm((PetscObject)bias), &result));
4467     PetscCheck(result == MPI_CONGRUENT || result == MPI_IDENT, PETSC_COMM_SELF, PETSC_ERR_ARG_NOTSAMECOMM, "constraint bias must have local communicator");
4468   }
4469   PetscCall(PetscObjectReference((PetscObject)section));
4470   PetscCall(PetscSectionDestroy(&dm->defaultConstraint.section));
4471   dm->defaultConstraint.section = section;
4472   PetscCall(PetscObjectReference((PetscObject)mat));
4473   PetscCall(MatDestroy(&dm->defaultConstraint.mat));
4474   dm->defaultConstraint.mat = mat;
4475   PetscCall(PetscObjectReference((PetscObject)bias));
4476   PetscCall(VecDestroy(&dm->defaultConstraint.bias));
4477   dm->defaultConstraint.bias = bias;
4478   PetscFunctionReturn(PETSC_SUCCESS);
4479 }
4480 
4481 #if defined(PETSC_USE_DEBUG)
4482 /*
4483   DMDefaultSectionCheckConsistency - Check the consistentcy of the global and local sections. Generates and error if they are not consistent.
4484 
4485   Input Parameters:
4486 + dm - The `DM`
4487 . localSection - `PetscSection` describing the local data layout
4488 - globalSection - `PetscSection` describing the global data layout
4489 
4490   Level: intermediate
4491 
4492 .seealso: [](ch_dmbase), `DM`, `DMGetSectionSF()`, `DMSetSectionSF()`
4493 */
4494 static PetscErrorCode DMDefaultSectionCheckConsistency_Internal(DM dm, PetscSection localSection, PetscSection globalSection)
4495 {
4496   MPI_Comm        comm;
4497   PetscLayout     layout;
4498   const PetscInt *ranges;
4499   PetscInt        pStart, pEnd, p, nroots;
4500   PetscMPIInt     size, rank;
4501   PetscBool       valid = PETSC_TRUE, gvalid;
4502 
4503   PetscFunctionBegin;
4504   PetscCall(PetscObjectGetComm((PetscObject)dm, &comm));
4505   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
4506   PetscCallMPI(MPI_Comm_size(comm, &size));
4507   PetscCallMPI(MPI_Comm_rank(comm, &rank));
4508   PetscCall(PetscSectionGetChart(globalSection, &pStart, &pEnd));
4509   PetscCall(PetscSectionGetConstrainedStorageSize(globalSection, &nroots));
4510   PetscCall(PetscLayoutCreate(comm, &layout));
4511   PetscCall(PetscLayoutSetBlockSize(layout, 1));
4512   PetscCall(PetscLayoutSetLocalSize(layout, nroots));
4513   PetscCall(PetscLayoutSetUp(layout));
4514   PetscCall(PetscLayoutGetRanges(layout, &ranges));
4515   for (p = pStart; p < pEnd; ++p) {
4516     PetscInt dof, cdof, off, gdof, gcdof, goff, gsize, d;
4517 
4518     PetscCall(PetscSectionGetDof(localSection, p, &dof));
4519     PetscCall(PetscSectionGetOffset(localSection, p, &off));
4520     PetscCall(PetscSectionGetConstraintDof(localSection, p, &cdof));
4521     PetscCall(PetscSectionGetDof(globalSection, p, &gdof));
4522     PetscCall(PetscSectionGetConstraintDof(globalSection, p, &gcdof));
4523     PetscCall(PetscSectionGetOffset(globalSection, p, &goff));
4524     if (!gdof) continue; /* Censored point */
4525     if ((gdof < 0 ? -(gdof + 1) : gdof) != dof) {
4526       PetscCall(PetscSynchronizedPrintf(comm, "[%d]Global dof %" PetscInt_FMT " for point %" PetscInt_FMT " not equal to local dof %" PetscInt_FMT "\n", rank, gdof, p, dof));
4527       valid = PETSC_FALSE;
4528     }
4529     if (gcdof && (gcdof != cdof)) {
4530       PetscCall(PetscSynchronizedPrintf(comm, "[%d]Global constraints %" PetscInt_FMT " for point %" PetscInt_FMT " not equal to local constraints %" PetscInt_FMT "\n", rank, gcdof, p, cdof));
4531       valid = PETSC_FALSE;
4532     }
4533     if (gdof < 0) {
4534       gsize = gdof < 0 ? -(gdof + 1) - gcdof : gdof - gcdof;
4535       for (d = 0; d < gsize; ++d) {
4536         PetscInt offset = -(goff + 1) + d, r;
4537 
4538         PetscCall(PetscFindInt(offset, size + 1, ranges, &r));
4539         if (r < 0) r = -(r + 2);
4540         if ((r < 0) || (r >= size)) {
4541           PetscCall(PetscSynchronizedPrintf(comm, "[%d]Point %" PetscInt_FMT " mapped to invalid process %" PetscInt_FMT " (%" PetscInt_FMT ", %" PetscInt_FMT ")\n", rank, p, r, gdof, goff));
4542           valid = PETSC_FALSE;
4543           break;
4544         }
4545       }
4546     }
4547   }
4548   PetscCall(PetscLayoutDestroy(&layout));
4549   PetscCall(PetscSynchronizedFlush(comm, NULL));
4550   PetscCall(MPIU_Allreduce(&valid, &gvalid, 1, MPIU_BOOL, MPI_LAND, comm));
4551   if (!gvalid) {
4552     PetscCall(DMView(dm, NULL));
4553     SETERRQ(comm, PETSC_ERR_ARG_WRONG, "Inconsistent local and global sections");
4554   }
4555   PetscFunctionReturn(PETSC_SUCCESS);
4556 }
4557 #endif
4558 
4559 static PetscErrorCode DMGetIsoperiodicPointSF_Internal(DM dm, PetscSF *sf)
4560 {
4561   PetscErrorCode (*f)(DM, PetscSF *);
4562 
4563   PetscFunctionBegin;
4564   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
4565   PetscAssertPointer(sf, 2);
4566   PetscCall(PetscObjectQueryFunction((PetscObject)dm, "DMGetIsoperiodicPointSF_C", &f));
4567   if (f) PetscCall(f(dm, sf));
4568   else *sf = dm->sf;
4569   PetscFunctionReturn(PETSC_SUCCESS);
4570 }
4571 
4572 /*@
4573   DMGetGlobalSection - Get the `PetscSection` encoding the global data layout for the `DM`.
4574 
4575   Collective
4576 
4577   Input Parameter:
4578 . dm - The `DM`
4579 
4580   Output Parameter:
4581 . section - The `PetscSection`
4582 
4583   Level: intermediate
4584 
4585   Note:
4586   This gets a borrowed reference, so the user should not destroy this `PetscSection`.
4587 
4588 .seealso: [](ch_dmbase), `DM`, `DMSetLocalSection()`, `DMGetLocalSection()`
4589 @*/
4590 PetscErrorCode DMGetGlobalSection(DM dm, PetscSection *section)
4591 {
4592   PetscFunctionBegin;
4593   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
4594   PetscAssertPointer(section, 2);
4595   if (!dm->globalSection) {
4596     PetscSection s;
4597     PetscSF      sf;
4598 
4599     PetscCall(DMGetLocalSection(dm, &s));
4600     PetscCheck(s, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONGSTATE, "DM must have a default PetscSection in order to create a global PetscSection");
4601     PetscCheck(dm->sf, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONGSTATE, "DM must have a point PetscSF in order to create a global PetscSection");
4602     PetscCall(DMGetIsoperiodicPointSF_Internal(dm, &sf));
4603     PetscCall(PetscSectionCreateGlobalSection(s, sf, PETSC_TRUE, PETSC_FALSE, PETSC_FALSE, &dm->globalSection));
4604     PetscCall(PetscLayoutDestroy(&dm->map));
4605     PetscCall(PetscSectionGetValueLayout(PetscObjectComm((PetscObject)dm), dm->globalSection, &dm->map));
4606     PetscCall(PetscSectionViewFromOptions(dm->globalSection, NULL, "-global_section_view"));
4607   }
4608   *section = dm->globalSection;
4609   PetscFunctionReturn(PETSC_SUCCESS);
4610 }
4611 
4612 /*@
4613   DMSetGlobalSection - Set the `PetscSection` encoding the global data layout for the `DM`.
4614 
4615   Input Parameters:
4616 + dm      - The `DM`
4617 - section - The PetscSection, or `NULL`
4618 
4619   Level: intermediate
4620 
4621   Note:
4622   Any existing `PetscSection` will be destroyed
4623 
4624 .seealso: [](ch_dmbase), `DM`, `DMGetGlobalSection()`, `DMSetLocalSection()`
4625 @*/
4626 PetscErrorCode DMSetGlobalSection(DM dm, PetscSection section)
4627 {
4628   PetscFunctionBegin;
4629   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
4630   if (section) PetscValidHeaderSpecific(section, PETSC_SECTION_CLASSID, 2);
4631   PetscCall(PetscObjectReference((PetscObject)section));
4632   PetscCall(PetscSectionDestroy(&dm->globalSection));
4633   dm->globalSection = section;
4634 #if defined(PETSC_USE_DEBUG)
4635   if (section) PetscCall(DMDefaultSectionCheckConsistency_Internal(dm, dm->localSection, section));
4636 #endif
4637   /* Clear global scratch vectors and sectionSF */
4638   PetscCall(PetscSFDestroy(&dm->sectionSF));
4639   PetscCall(DMClearGlobalVectors(dm));
4640   PetscCall(DMClearNamedGlobalVectors(dm));
4641   PetscFunctionReturn(PETSC_SUCCESS);
4642 }
4643 
4644 /*@
4645   DMGetSectionSF - Get the `PetscSF` encoding the parallel dof overlap for the `DM`. If it has not been set,
4646   it is created from the default `PetscSection` layouts in the `DM`.
4647 
4648   Input Parameter:
4649 . dm - The `DM`
4650 
4651   Output Parameter:
4652 . sf - The `PetscSF`
4653 
4654   Level: intermediate
4655 
4656   Note:
4657   This gets a borrowed reference, so the user should not destroy this `PetscSF`.
4658 
4659 .seealso: [](ch_dmbase), `DM`, `DMSetSectionSF()`, `DMCreateSectionSF()`
4660 @*/
4661 PetscErrorCode DMGetSectionSF(DM dm, PetscSF *sf)
4662 {
4663   PetscInt nroots;
4664 
4665   PetscFunctionBegin;
4666   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
4667   PetscAssertPointer(sf, 2);
4668   if (!dm->sectionSF) PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)dm), &dm->sectionSF));
4669   PetscCall(PetscSFGetGraph(dm->sectionSF, &nroots, NULL, NULL, NULL));
4670   if (nroots < 0) {
4671     PetscSection section, gSection;
4672 
4673     PetscCall(DMGetLocalSection(dm, &section));
4674     if (section) {
4675       PetscCall(DMGetGlobalSection(dm, &gSection));
4676       PetscCall(DMCreateSectionSF(dm, section, gSection));
4677     } else {
4678       *sf = NULL;
4679       PetscFunctionReturn(PETSC_SUCCESS);
4680     }
4681   }
4682   *sf = dm->sectionSF;
4683   PetscFunctionReturn(PETSC_SUCCESS);
4684 }
4685 
4686 /*@
4687   DMSetSectionSF - Set the `PetscSF` encoding the parallel dof overlap for the `DM`
4688 
4689   Input Parameters:
4690 + dm - The `DM`
4691 - sf - The `PetscSF`
4692 
4693   Level: intermediate
4694 
4695   Note:
4696   Any previous `PetscSF` is destroyed
4697 
4698 .seealso: [](ch_dmbase), `DM`, `DMGetSectionSF()`, `DMCreateSectionSF()`
4699 @*/
4700 PetscErrorCode DMSetSectionSF(DM dm, PetscSF sf)
4701 {
4702   PetscFunctionBegin;
4703   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
4704   if (sf) PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 2);
4705   PetscCall(PetscObjectReference((PetscObject)sf));
4706   PetscCall(PetscSFDestroy(&dm->sectionSF));
4707   dm->sectionSF = sf;
4708   PetscFunctionReturn(PETSC_SUCCESS);
4709 }
4710 
4711 /*@C
4712   DMCreateSectionSF - Create the `PetscSF` encoding the parallel dof overlap for the `DM` based upon the `PetscSection`s
4713   describing the data layout.
4714 
4715   Input Parameters:
4716 + dm            - The `DM`
4717 . localSection  - `PetscSection` describing the local data layout
4718 - globalSection - `PetscSection` describing the global data layout
4719 
4720   Level: developer
4721 
4722   Note:
4723   One usually uses `DMGetSectionSF()` to obtain the `PetscSF`
4724 
4725   Developer Notes:
4726   Since this routine has for arguments the two sections from the `DM` and puts the resulting `PetscSF`
4727   directly into the `DM`, perhaps this function should not take the local and global sections as
4728   input and should just obtain them from the `DM`?
4729 
4730 .seealso: [](ch_dmbase), `DM`, `DMGetSectionSF()`, `DMSetSectionSF()`, `DMGetLocalSection()`, `DMGetGlobalSection()`
4731 @*/
4732 PetscErrorCode DMCreateSectionSF(DM dm, PetscSection localSection, PetscSection globalSection)
4733 {
4734   PetscFunctionBegin;
4735   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
4736   PetscCall(PetscSFSetGraphSection(dm->sectionSF, localSection, globalSection));
4737   PetscFunctionReturn(PETSC_SUCCESS);
4738 }
4739 
4740 /*@
4741   DMGetPointSF - Get the `PetscSF` encoding the parallel section point overlap for the `DM`.
4742 
4743   Not collective but the resulting `PetscSF` is collective
4744 
4745   Input Parameter:
4746 . dm - The `DM`
4747 
4748   Output Parameter:
4749 . sf - The `PetscSF`
4750 
4751   Level: intermediate
4752 
4753   Note:
4754   This gets a borrowed reference, so the user should not destroy this `PetscSF`.
4755 
4756 .seealso: [](ch_dmbase), `DM`, `DMSetPointSF()`, `DMGetSectionSF()`, `DMSetSectionSF()`, `DMCreateSectionSF()`
4757 @*/
4758 PetscErrorCode DMGetPointSF(DM dm, PetscSF *sf)
4759 {
4760   PetscFunctionBegin;
4761   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
4762   PetscAssertPointer(sf, 2);
4763   *sf = dm->sf;
4764   PetscFunctionReturn(PETSC_SUCCESS);
4765 }
4766 
4767 /*@
4768   DMSetPointSF - Set the `PetscSF` encoding the parallel section point overlap for the `DM`.
4769 
4770   Collective
4771 
4772   Input Parameters:
4773 + dm - The `DM`
4774 - sf - The `PetscSF`
4775 
4776   Level: intermediate
4777 
4778 .seealso: [](ch_dmbase), `DM`, `DMGetPointSF()`, `DMGetSectionSF()`, `DMSetSectionSF()`, `DMCreateSectionSF()`
4779 @*/
4780 PetscErrorCode DMSetPointSF(DM dm, PetscSF sf)
4781 {
4782   PetscFunctionBegin;
4783   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
4784   if (sf) PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 2);
4785   PetscCall(PetscObjectReference((PetscObject)sf));
4786   PetscCall(PetscSFDestroy(&dm->sf));
4787   dm->sf = sf;
4788   PetscFunctionReturn(PETSC_SUCCESS);
4789 }
4790 
4791 /*@
4792   DMGetNaturalSF - Get the `PetscSF` encoding the map back to the original mesh ordering
4793 
4794   Input Parameter:
4795 . dm - The `DM`
4796 
4797   Output Parameter:
4798 . sf - The `PetscSF`
4799 
4800   Level: intermediate
4801 
4802   Note:
4803   This gets a borrowed reference, so the user should not destroy this `PetscSF`.
4804 
4805 .seealso: [](ch_dmbase), `DM`, `DMSetNaturalSF()`, `DMSetUseNatural()`, `DMGetUseNatural()`, `DMPlexCreateGlobalToNaturalSF()`, `DMPlexDistribute()`
4806 @*/
4807 PetscErrorCode DMGetNaturalSF(DM dm, PetscSF *sf)
4808 {
4809   PetscFunctionBegin;
4810   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
4811   PetscAssertPointer(sf, 2);
4812   *sf = dm->sfNatural;
4813   PetscFunctionReturn(PETSC_SUCCESS);
4814 }
4815 
4816 /*@
4817   DMSetNaturalSF - Set the PetscSF encoding the map back to the original mesh ordering
4818 
4819   Input Parameters:
4820 + dm - The DM
4821 - sf - The PetscSF
4822 
4823   Level: intermediate
4824 
4825 .seealso: [](ch_dmbase), `DM`, `DMGetNaturalSF()`, `DMSetUseNatural()`, `DMGetUseNatural()`, `DMPlexCreateGlobalToNaturalSF()`, `DMPlexDistribute()`
4826 @*/
4827 PetscErrorCode DMSetNaturalSF(DM dm, PetscSF sf)
4828 {
4829   PetscFunctionBegin;
4830   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
4831   if (sf) PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 2);
4832   PetscCall(PetscObjectReference((PetscObject)sf));
4833   PetscCall(PetscSFDestroy(&dm->sfNatural));
4834   dm->sfNatural = sf;
4835   PetscFunctionReturn(PETSC_SUCCESS);
4836 }
4837 
4838 static PetscErrorCode DMSetDefaultAdjacency_Private(DM dm, PetscInt f, PetscObject disc)
4839 {
4840   PetscClassId id;
4841 
4842   PetscFunctionBegin;
4843   PetscCall(PetscObjectGetClassId(disc, &id));
4844   if (id == PETSCFE_CLASSID) {
4845     PetscCall(DMSetAdjacency(dm, f, PETSC_FALSE, PETSC_TRUE));
4846   } else if (id == PETSCFV_CLASSID) {
4847     PetscCall(DMSetAdjacency(dm, f, PETSC_TRUE, PETSC_FALSE));
4848   } else {
4849     PetscCall(DMSetAdjacency(dm, f, PETSC_FALSE, PETSC_TRUE));
4850   }
4851   PetscFunctionReturn(PETSC_SUCCESS);
4852 }
4853 
4854 static PetscErrorCode DMFieldEnlarge_Static(DM dm, PetscInt NfNew)
4855 {
4856   RegionField *tmpr;
4857   PetscInt     Nf = dm->Nf, f;
4858 
4859   PetscFunctionBegin;
4860   if (Nf >= NfNew) PetscFunctionReturn(PETSC_SUCCESS);
4861   PetscCall(PetscMalloc1(NfNew, &tmpr));
4862   for (f = 0; f < Nf; ++f) tmpr[f] = dm->fields[f];
4863   for (f = Nf; f < NfNew; ++f) {
4864     tmpr[f].disc        = NULL;
4865     tmpr[f].label       = NULL;
4866     tmpr[f].avoidTensor = PETSC_FALSE;
4867   }
4868   PetscCall(PetscFree(dm->fields));
4869   dm->Nf     = NfNew;
4870   dm->fields = tmpr;
4871   PetscFunctionReturn(PETSC_SUCCESS);
4872 }
4873 
4874 /*@
4875   DMClearFields - Remove all fields from the `DM`
4876 
4877   Logically Collective
4878 
4879   Input Parameter:
4880 . dm - The `DM`
4881 
4882   Level: intermediate
4883 
4884 .seealso: [](ch_dmbase), `DM`, `DMGetNumFields()`, `DMSetNumFields()`, `DMSetField()`
4885 @*/
4886 PetscErrorCode DMClearFields(DM dm)
4887 {
4888   PetscInt f;
4889 
4890   PetscFunctionBegin;
4891   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
4892   for (f = 0; f < dm->Nf; ++f) {
4893     PetscCall(PetscObjectDestroy(&dm->fields[f].disc));
4894     PetscCall(DMLabelDestroy(&dm->fields[f].label));
4895   }
4896   PetscCall(PetscFree(dm->fields));
4897   dm->fields = NULL;
4898   dm->Nf     = 0;
4899   PetscFunctionReturn(PETSC_SUCCESS);
4900 }
4901 
4902 /*@
4903   DMGetNumFields - Get the number of fields in the `DM`
4904 
4905   Not Collective
4906 
4907   Input Parameter:
4908 . dm - The `DM`
4909 
4910   Output Parameter:
4911 . numFields - The number of fields
4912 
4913   Level: intermediate
4914 
4915 .seealso: [](ch_dmbase), `DM`, `DMSetNumFields()`, `DMSetField()`
4916 @*/
4917 PetscErrorCode DMGetNumFields(DM dm, PetscInt *numFields)
4918 {
4919   PetscFunctionBegin;
4920   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
4921   PetscAssertPointer(numFields, 2);
4922   *numFields = dm->Nf;
4923   PetscFunctionReturn(PETSC_SUCCESS);
4924 }
4925 
4926 /*@
4927   DMSetNumFields - Set the number of fields in the `DM`
4928 
4929   Logically Collective
4930 
4931   Input Parameters:
4932 + dm        - The `DM`
4933 - numFields - The number of fields
4934 
4935   Level: intermediate
4936 
4937 .seealso: [](ch_dmbase), `DM`, `DMGetNumFields()`, `DMSetField()`
4938 @*/
4939 PetscErrorCode DMSetNumFields(DM dm, PetscInt numFields)
4940 {
4941   PetscInt Nf, f;
4942 
4943   PetscFunctionBegin;
4944   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
4945   PetscCall(DMGetNumFields(dm, &Nf));
4946   for (f = Nf; f < numFields; ++f) {
4947     PetscContainer obj;
4948 
4949     PetscCall(PetscContainerCreate(PetscObjectComm((PetscObject)dm), &obj));
4950     PetscCall(DMAddField(dm, NULL, (PetscObject)obj));
4951     PetscCall(PetscContainerDestroy(&obj));
4952   }
4953   PetscFunctionReturn(PETSC_SUCCESS);
4954 }
4955 
4956 /*@
4957   DMGetField - Return the `DMLabel` and discretization object for a given `DM` field
4958 
4959   Not Collective
4960 
4961   Input Parameters:
4962 + dm - The `DM`
4963 - f  - The field number
4964 
4965   Output Parameters:
4966 + label - The label indicating the support of the field, or `NULL` for the entire mesh (pass in `NULL` if not needed)
4967 - disc  - The discretization object (pass in `NULL` if not needed)
4968 
4969   Level: intermediate
4970 
4971 .seealso: [](ch_dmbase), `DM`, `DMAddField()`, `DMSetField()`
4972 @*/
4973 PetscErrorCode DMGetField(DM dm, PetscInt f, DMLabel *label, PetscObject *disc)
4974 {
4975   PetscFunctionBegin;
4976   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
4977   PetscAssertPointer(disc, 4);
4978   PetscCheck((f >= 0) && (f < dm->Nf), PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Field number %" PetscInt_FMT " must be in [0, %" PetscInt_FMT ")", f, dm->Nf);
4979   if (label) *label = dm->fields[f].label;
4980   if (disc) *disc = dm->fields[f].disc;
4981   PetscFunctionReturn(PETSC_SUCCESS);
4982 }
4983 
4984 /* Does not clear the DS */
4985 PetscErrorCode DMSetField_Internal(DM dm, PetscInt f, DMLabel label, PetscObject disc)
4986 {
4987   PetscFunctionBegin;
4988   PetscCall(DMFieldEnlarge_Static(dm, f + 1));
4989   PetscCall(DMLabelDestroy(&dm->fields[f].label));
4990   PetscCall(PetscObjectDestroy(&dm->fields[f].disc));
4991   dm->fields[f].label = label;
4992   dm->fields[f].disc  = disc;
4993   PetscCall(PetscObjectReference((PetscObject)label));
4994   PetscCall(PetscObjectReference((PetscObject)disc));
4995   PetscFunctionReturn(PETSC_SUCCESS);
4996 }
4997 
4998 /*@C
4999   DMSetField - Set the discretization object for a given `DM` field. Usually one would call `DMAddField()` which automatically handles
5000   the field numbering.
5001 
5002   Logically Collective
5003 
5004   Input Parameters:
5005 + dm    - The `DM`
5006 . f     - The field number
5007 . label - The label indicating the support of the field, or `NULL` for the entire mesh
5008 - disc  - The discretization object
5009 
5010   Level: intermediate
5011 
5012 .seealso: [](ch_dmbase), `DM`, `DMAddField()`, `DMGetField()`
5013 @*/
5014 PetscErrorCode DMSetField(DM dm, PetscInt f, DMLabel label, PetscObject disc)
5015 {
5016   PetscFunctionBegin;
5017   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
5018   if (label) PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 3);
5019   PetscValidHeader(disc, 4);
5020   PetscCheck(f >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Field number %" PetscInt_FMT " must be non-negative", f);
5021   PetscCall(DMSetField_Internal(dm, f, label, disc));
5022   PetscCall(DMSetDefaultAdjacency_Private(dm, f, disc));
5023   PetscCall(DMClearDS(dm));
5024   PetscFunctionReturn(PETSC_SUCCESS);
5025 }
5026 
5027 /*@C
5028   DMAddField - Add a field to a `DM` object. A field is a function space defined by of a set of discretization points (geometric entities)
5029   and a discretization object that defines the function space associated with those points.
5030 
5031   Logically Collective
5032 
5033   Input Parameters:
5034 + dm    - The `DM`
5035 . label - The label indicating the support of the field, or `NULL` for the entire mesh
5036 - disc  - The discretization object
5037 
5038   Level: intermediate
5039 
5040   Notes:
5041   The label already exists or will be added to the `DM` with `DMSetLabel()`.
5042 
5043   For example, a piecewise continuous pressure field can be defined by coefficients at the cell centers of a mesh and piecewise constant functions
5044   within each cell. Thus a specific function in the space is defined by the combination of a `Vec` containing the coefficients, a `DM` defining the
5045   geometry entities, a `DMLabel` indicating a subset of those geometric entities, and a discretization object, such as a `PetscFE`.
5046 
5047 .seealso: [](ch_dmbase), `DM`, `DMSetLabel()`, `DMSetField()`, `DMGetField()`, `PetscFE`
5048 @*/
5049 PetscErrorCode DMAddField(DM dm, DMLabel label, PetscObject disc)
5050 {
5051   PetscInt Nf = dm->Nf;
5052 
5053   PetscFunctionBegin;
5054   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
5055   if (label) PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 2);
5056   PetscValidHeader(disc, 3);
5057   PetscCall(DMFieldEnlarge_Static(dm, Nf + 1));
5058   dm->fields[Nf].label = label;
5059   dm->fields[Nf].disc  = disc;
5060   PetscCall(PetscObjectReference((PetscObject)label));
5061   PetscCall(PetscObjectReference((PetscObject)disc));
5062   PetscCall(DMSetDefaultAdjacency_Private(dm, Nf, disc));
5063   PetscCall(DMClearDS(dm));
5064   PetscFunctionReturn(PETSC_SUCCESS);
5065 }
5066 
5067 /*@
5068   DMSetFieldAvoidTensor - Set flag to avoid defining the field on tensor cells
5069 
5070   Logically Collective
5071 
5072   Input Parameters:
5073 + dm          - The `DM`
5074 . f           - The field index
5075 - avoidTensor - `PETSC_TRUE` to skip defining the field on tensor cells
5076 
5077   Level: intermediate
5078 
5079 .seealso: [](ch_dmbase), `DM`, `DMGetFieldAvoidTensor()`, `DMSetField()`, `DMGetField()`
5080 @*/
5081 PetscErrorCode DMSetFieldAvoidTensor(DM dm, PetscInt f, PetscBool avoidTensor)
5082 {
5083   PetscFunctionBegin;
5084   PetscCheck((f >= 0) && (f < dm->Nf), PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Field %" PetscInt_FMT " is not in [0, %" PetscInt_FMT ")", f, dm->Nf);
5085   dm->fields[f].avoidTensor = avoidTensor;
5086   PetscFunctionReturn(PETSC_SUCCESS);
5087 }
5088 
5089 /*@
5090   DMGetFieldAvoidTensor - Get flag to avoid defining the field on tensor cells
5091 
5092   Not Collective
5093 
5094   Input Parameters:
5095 + dm - The `DM`
5096 - f  - The field index
5097 
5098   Output Parameter:
5099 . avoidTensor - The flag to avoid defining the field on tensor cells
5100 
5101   Level: intermediate
5102 
5103 .seealso: [](ch_dmbase), `DM`, `DMAddField()`, `DMSetField()`, `DMGetField()`, `DMSetFieldAvoidTensor()`
5104 @*/
5105 PetscErrorCode DMGetFieldAvoidTensor(DM dm, PetscInt f, PetscBool *avoidTensor)
5106 {
5107   PetscFunctionBegin;
5108   PetscCheck((f >= 0) && (f < dm->Nf), PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Field %" PetscInt_FMT " is not in [0, %" PetscInt_FMT ")", f, dm->Nf);
5109   *avoidTensor = dm->fields[f].avoidTensor;
5110   PetscFunctionReturn(PETSC_SUCCESS);
5111 }
5112 
5113 /*@
5114   DMCopyFields - Copy the discretizations for the `DM` into another `DM`
5115 
5116   Collective
5117 
5118   Input Parameter:
5119 . dm - The `DM`
5120 
5121   Output Parameter:
5122 . newdm - The `DM`
5123 
5124   Level: advanced
5125 
5126 .seealso: [](ch_dmbase), `DM`, `DMGetField()`, `DMSetField()`, `DMAddField()`, `DMCopyDS()`, `DMGetDS()`, `DMGetCellDS()`
5127 @*/
5128 PetscErrorCode DMCopyFields(DM dm, DM newdm)
5129 {
5130   PetscInt Nf, f;
5131 
5132   PetscFunctionBegin;
5133   if (dm == newdm) PetscFunctionReturn(PETSC_SUCCESS);
5134   PetscCall(DMGetNumFields(dm, &Nf));
5135   PetscCall(DMClearFields(newdm));
5136   for (f = 0; f < Nf; ++f) {
5137     DMLabel     label;
5138     PetscObject field;
5139     PetscBool   useCone, useClosure;
5140 
5141     PetscCall(DMGetField(dm, f, &label, &field));
5142     PetscCall(DMSetField(newdm, f, label, field));
5143     PetscCall(DMGetAdjacency(dm, f, &useCone, &useClosure));
5144     PetscCall(DMSetAdjacency(newdm, f, useCone, useClosure));
5145   }
5146   PetscFunctionReturn(PETSC_SUCCESS);
5147 }
5148 
5149 /*@
5150   DMGetAdjacency - Returns the flags for determining variable influence
5151 
5152   Not Collective
5153 
5154   Input Parameters:
5155 + dm - The `DM` object
5156 - f  - The field number, or `PETSC_DEFAULT` for the default adjacency
5157 
5158   Output Parameters:
5159 + useCone    - Flag for variable influence starting with the cone operation
5160 - useClosure - Flag for variable influence using transitive closure
5161 
5162   Level: developer
5163 
5164   Notes:
5165 .vb
5166      FEM:   Two points p and q are adjacent if q \in closure(star(p)),   useCone = PETSC_FALSE, useClosure = PETSC_TRUE
5167      FVM:   Two points p and q are adjacent if q \in support(p+cone(p)), useCone = PETSC_TRUE,  useClosure = PETSC_FALSE
5168      FVM++: Two points p and q are adjacent if q \in star(closure(p)),   useCone = PETSC_TRUE,  useClosure = PETSC_TRUE
5169 .ve
5170   Further explanation can be found in the User's Manual Section on the Influence of Variables on One Another.
5171 
5172 .seealso: [](ch_dmbase), `DM`, `DMSetAdjacency()`, `DMGetField()`, `DMSetField()`
5173 @*/
5174 PetscErrorCode DMGetAdjacency(DM dm, PetscInt f, PetscBool *useCone, PetscBool *useClosure)
5175 {
5176   PetscFunctionBegin;
5177   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
5178   if (useCone) PetscAssertPointer(useCone, 3);
5179   if (useClosure) PetscAssertPointer(useClosure, 4);
5180   if (f < 0) {
5181     if (useCone) *useCone = dm->adjacency[0];
5182     if (useClosure) *useClosure = dm->adjacency[1];
5183   } else {
5184     PetscInt Nf;
5185 
5186     PetscCall(DMGetNumFields(dm, &Nf));
5187     PetscCheck(f < Nf, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Field number %" PetscInt_FMT " must be in [0, %" PetscInt_FMT ")", f, Nf);
5188     if (useCone) *useCone = dm->fields[f].adjacency[0];
5189     if (useClosure) *useClosure = dm->fields[f].adjacency[1];
5190   }
5191   PetscFunctionReturn(PETSC_SUCCESS);
5192 }
5193 
5194 /*@
5195   DMSetAdjacency - Set the flags for determining variable influence
5196 
5197   Not Collective
5198 
5199   Input Parameters:
5200 + dm         - The `DM` object
5201 . f          - The field number
5202 . useCone    - Flag for variable influence starting with the cone operation
5203 - useClosure - Flag for variable influence using transitive closure
5204 
5205   Level: developer
5206 
5207   Notes:
5208 .vb
5209      FEM:   Two points p and q are adjacent if q \in closure(star(p)),   useCone = PETSC_FALSE, useClosure = PETSC_TRUE
5210      FVM:   Two points p and q are adjacent if q \in support(p+cone(p)), useCone = PETSC_TRUE,  useClosure = PETSC_FALSE
5211      FVM++: Two points p and q are adjacent if q \in star(closure(p)),   useCone = PETSC_TRUE,  useClosure = PETSC_TRUE
5212 .ve
5213   Further explanation can be found in the User's Manual Section on the Influence of Variables on One Another.
5214 
5215 .seealso: [](ch_dmbase), `DM`, `DMGetAdjacency()`, `DMGetField()`, `DMSetField()`
5216 @*/
5217 PetscErrorCode DMSetAdjacency(DM dm, PetscInt f, PetscBool useCone, PetscBool useClosure)
5218 {
5219   PetscFunctionBegin;
5220   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
5221   if (f < 0) {
5222     dm->adjacency[0] = useCone;
5223     dm->adjacency[1] = useClosure;
5224   } else {
5225     PetscInt Nf;
5226 
5227     PetscCall(DMGetNumFields(dm, &Nf));
5228     PetscCheck(f < Nf, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Field number %" PetscInt_FMT " must be in [0, %" PetscInt_FMT ")", f, Nf);
5229     dm->fields[f].adjacency[0] = useCone;
5230     dm->fields[f].adjacency[1] = useClosure;
5231   }
5232   PetscFunctionReturn(PETSC_SUCCESS);
5233 }
5234 
5235 /*@
5236   DMGetBasicAdjacency - Returns the flags for determining variable influence, using either the default or field 0 if it is defined
5237 
5238   Not collective
5239 
5240   Input Parameter:
5241 . dm - The `DM` object
5242 
5243   Output Parameters:
5244 + useCone    - Flag for variable influence starting with the cone operation
5245 - useClosure - Flag for variable influence using transitive closure
5246 
5247   Level: developer
5248 
5249   Notes:
5250 .vb
5251      FEM:   Two points p and q are adjacent if q \in closure(star(p)),   useCone = PETSC_FALSE, useClosure = PETSC_TRUE
5252      FVM:   Two points p and q are adjacent if q \in support(p+cone(p)), useCone = PETSC_TRUE,  useClosure = PETSC_FALSE
5253      FVM++: Two points p and q are adjacent if q \in star(closure(p)),   useCone = PETSC_TRUE,  useClosure = PETSC_TRUE
5254 .ve
5255 
5256 .seealso: [](ch_dmbase), `DM`, `DMSetBasicAdjacency()`, `DMGetField()`, `DMSetField()`
5257 @*/
5258 PetscErrorCode DMGetBasicAdjacency(DM dm, PetscBool *useCone, PetscBool *useClosure)
5259 {
5260   PetscInt Nf;
5261 
5262   PetscFunctionBegin;
5263   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
5264   if (useCone) PetscAssertPointer(useCone, 2);
5265   if (useClosure) PetscAssertPointer(useClosure, 3);
5266   PetscCall(DMGetNumFields(dm, &Nf));
5267   if (!Nf) {
5268     PetscCall(DMGetAdjacency(dm, PETSC_DEFAULT, useCone, useClosure));
5269   } else {
5270     PetscCall(DMGetAdjacency(dm, 0, useCone, useClosure));
5271   }
5272   PetscFunctionReturn(PETSC_SUCCESS);
5273 }
5274 
5275 /*@
5276   DMSetBasicAdjacency - Set the flags for determining variable influence, using either the default or field 0 if it is defined
5277 
5278   Not Collective
5279 
5280   Input Parameters:
5281 + dm         - The `DM` object
5282 . useCone    - Flag for variable influence starting with the cone operation
5283 - useClosure - Flag for variable influence using transitive closure
5284 
5285   Level: developer
5286 
5287   Notes:
5288 .vb
5289      FEM:   Two points p and q are adjacent if q \in closure(star(p)),   useCone = PETSC_FALSE, useClosure = PETSC_TRUE
5290      FVM:   Two points p and q are adjacent if q \in support(p+cone(p)), useCone = PETSC_TRUE,  useClosure = PETSC_FALSE
5291      FVM++: Two points p and q are adjacent if q \in star(closure(p)),   useCone = PETSC_TRUE,  useClosure = PETSC_TRUE
5292 .ve
5293 
5294 .seealso: [](ch_dmbase), `DM`, `DMGetBasicAdjacency()`, `DMGetField()`, `DMSetField()`
5295 @*/
5296 PetscErrorCode DMSetBasicAdjacency(DM dm, PetscBool useCone, PetscBool useClosure)
5297 {
5298   PetscInt Nf;
5299 
5300   PetscFunctionBegin;
5301   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
5302   PetscCall(DMGetNumFields(dm, &Nf));
5303   if (!Nf) {
5304     PetscCall(DMSetAdjacency(dm, PETSC_DEFAULT, useCone, useClosure));
5305   } else {
5306     PetscCall(DMSetAdjacency(dm, 0, useCone, useClosure));
5307   }
5308   PetscFunctionReturn(PETSC_SUCCESS);
5309 }
5310 
5311 PetscErrorCode DMCompleteBCLabels_Internal(DM dm)
5312 {
5313   DM           plex;
5314   DMLabel     *labels, *glabels;
5315   const char **names;
5316   char        *sendNames, *recvNames;
5317   PetscInt     Nds, s, maxLabels = 0, maxLen = 0, gmaxLen, Nl = 0, gNl, l, gl, m;
5318   size_t       len;
5319   MPI_Comm     comm;
5320   PetscMPIInt  rank, size, p, *counts, *displs;
5321 
5322   PetscFunctionBegin;
5323   PetscCall(PetscObjectGetComm((PetscObject)dm, &comm));
5324   PetscCallMPI(MPI_Comm_size(comm, &size));
5325   PetscCallMPI(MPI_Comm_rank(comm, &rank));
5326   PetscCall(DMGetNumDS(dm, &Nds));
5327   for (s = 0; s < Nds; ++s) {
5328     PetscDS  dsBC;
5329     PetscInt numBd;
5330 
5331     PetscCall(DMGetRegionNumDS(dm, s, NULL, NULL, &dsBC, NULL));
5332     PetscCall(PetscDSGetNumBoundary(dsBC, &numBd));
5333     maxLabels += numBd;
5334   }
5335   PetscCall(PetscCalloc1(maxLabels, &labels));
5336   /* Get list of labels to be completed */
5337   for (s = 0; s < Nds; ++s) {
5338     PetscDS  dsBC;
5339     PetscInt numBd, bd;
5340 
5341     PetscCall(DMGetRegionNumDS(dm, s, NULL, NULL, &dsBC, NULL));
5342     PetscCall(PetscDSGetNumBoundary(dsBC, &numBd));
5343     for (bd = 0; bd < numBd; ++bd) {
5344       DMLabel      label;
5345       PetscInt     field;
5346       PetscObject  obj;
5347       PetscClassId id;
5348 
5349       PetscCall(PetscDSGetBoundary(dsBC, bd, NULL, NULL, NULL, &label, NULL, NULL, &field, NULL, NULL, NULL, NULL, NULL));
5350       PetscCall(DMGetField(dm, field, NULL, &obj));
5351       PetscCall(PetscObjectGetClassId(obj, &id));
5352       if (!(id == PETSCFE_CLASSID) || !label) continue;
5353       for (l = 0; l < Nl; ++l)
5354         if (labels[l] == label) break;
5355       if (l == Nl) labels[Nl++] = label;
5356     }
5357   }
5358   /* Get label names */
5359   PetscCall(PetscMalloc1(Nl, &names));
5360   for (l = 0; l < Nl; ++l) PetscCall(PetscObjectGetName((PetscObject)labels[l], &names[l]));
5361   for (l = 0; l < Nl; ++l) {
5362     PetscCall(PetscStrlen(names[l], &len));
5363     maxLen = PetscMax(maxLen, (PetscInt)len + 2);
5364   }
5365   PetscCall(PetscFree(labels));
5366   PetscCall(MPIU_Allreduce(&maxLen, &gmaxLen, 1, MPIU_INT, MPI_MAX, comm));
5367   PetscCall(PetscCalloc1(Nl * gmaxLen, &sendNames));
5368   for (l = 0; l < Nl; ++l) PetscCall(PetscStrncpy(&sendNames[gmaxLen * l], names[l], gmaxLen));
5369   PetscCall(PetscFree(names));
5370   /* Put all names on all processes */
5371   PetscCall(PetscCalloc2(size, &counts, size + 1, &displs));
5372   PetscCallMPI(MPI_Allgather(&Nl, 1, MPI_INT, counts, 1, MPI_INT, comm));
5373   for (p = 0; p < size; ++p) displs[p + 1] = displs[p] + counts[p];
5374   gNl = displs[size];
5375   for (p = 0; p < size; ++p) {
5376     counts[p] *= gmaxLen;
5377     displs[p] *= gmaxLen;
5378   }
5379   PetscCall(PetscCalloc2(gNl * gmaxLen, &recvNames, gNl, &glabels));
5380   PetscCallMPI(MPI_Allgatherv(sendNames, counts[rank], MPI_CHAR, recvNames, counts, displs, MPI_CHAR, comm));
5381   PetscCall(PetscFree2(counts, displs));
5382   PetscCall(PetscFree(sendNames));
5383   for (l = 0, gl = 0; l < gNl; ++l) {
5384     PetscCall(DMGetLabel(dm, &recvNames[l * gmaxLen], &glabels[gl]));
5385     PetscCheck(glabels[gl], PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Label %s missing on rank %d", &recvNames[l * gmaxLen], rank);
5386     for (m = 0; m < gl; ++m)
5387       if (glabels[m] == glabels[gl]) continue;
5388     PetscCall(DMConvert(dm, DMPLEX, &plex));
5389     PetscCall(DMPlexLabelComplete(plex, glabels[gl]));
5390     PetscCall(DMDestroy(&plex));
5391     ++gl;
5392   }
5393   PetscCall(PetscFree2(recvNames, glabels));
5394   PetscFunctionReturn(PETSC_SUCCESS);
5395 }
5396 
5397 static PetscErrorCode DMDSEnlarge_Static(DM dm, PetscInt NdsNew)
5398 {
5399   DMSpace *tmpd;
5400   PetscInt Nds = dm->Nds, s;
5401 
5402   PetscFunctionBegin;
5403   if (Nds >= NdsNew) PetscFunctionReturn(PETSC_SUCCESS);
5404   PetscCall(PetscMalloc1(NdsNew, &tmpd));
5405   for (s = 0; s < Nds; ++s) tmpd[s] = dm->probs[s];
5406   for (s = Nds; s < NdsNew; ++s) {
5407     tmpd[s].ds     = NULL;
5408     tmpd[s].label  = NULL;
5409     tmpd[s].fields = NULL;
5410   }
5411   PetscCall(PetscFree(dm->probs));
5412   dm->Nds   = NdsNew;
5413   dm->probs = tmpd;
5414   PetscFunctionReturn(PETSC_SUCCESS);
5415 }
5416 
5417 /*@
5418   DMGetNumDS - Get the number of discrete systems in the `DM`
5419 
5420   Not Collective
5421 
5422   Input Parameter:
5423 . dm - The `DM`
5424 
5425   Output Parameter:
5426 . Nds - The number of `PetscDS` objects
5427 
5428   Level: intermediate
5429 
5430 .seealso: [](ch_dmbase), `DM`, `DMGetDS()`, `DMGetCellDS()`
5431 @*/
5432 PetscErrorCode DMGetNumDS(DM dm, PetscInt *Nds)
5433 {
5434   PetscFunctionBegin;
5435   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
5436   PetscAssertPointer(Nds, 2);
5437   *Nds = dm->Nds;
5438   PetscFunctionReturn(PETSC_SUCCESS);
5439 }
5440 
5441 /*@
5442   DMClearDS - Remove all discrete systems from the `DM`
5443 
5444   Logically Collective
5445 
5446   Input Parameter:
5447 . dm - The `DM`
5448 
5449   Level: intermediate
5450 
5451 .seealso: [](ch_dmbase), `DM`, `DMGetNumDS()`, `DMGetDS()`, `DMSetField()`
5452 @*/
5453 PetscErrorCode DMClearDS(DM dm)
5454 {
5455   PetscInt s;
5456 
5457   PetscFunctionBegin;
5458   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
5459   for (s = 0; s < dm->Nds; ++s) {
5460     PetscCall(PetscDSDestroy(&dm->probs[s].ds));
5461     PetscCall(PetscDSDestroy(&dm->probs[s].dsIn));
5462     PetscCall(DMLabelDestroy(&dm->probs[s].label));
5463     PetscCall(ISDestroy(&dm->probs[s].fields));
5464   }
5465   PetscCall(PetscFree(dm->probs));
5466   dm->probs = NULL;
5467   dm->Nds   = 0;
5468   PetscFunctionReturn(PETSC_SUCCESS);
5469 }
5470 
5471 /*@
5472   DMGetDS - Get the default `PetscDS`
5473 
5474   Not Collective
5475 
5476   Input Parameter:
5477 . dm - The `DM`
5478 
5479   Output Parameter:
5480 . ds - The default `PetscDS`
5481 
5482   Level: intermediate
5483 
5484 .seealso: [](ch_dmbase), `DM`, `DMGetCellDS()`, `DMGetRegionDS()`
5485 @*/
5486 PetscErrorCode DMGetDS(DM dm, PetscDS *ds)
5487 {
5488   PetscFunctionBeginHot;
5489   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
5490   PetscAssertPointer(ds, 2);
5491   PetscCheck(dm->Nds > 0, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONGSTATE, "Need to call DMCreateDS() before calling DMGetDS()");
5492   *ds = dm->probs[0].ds;
5493   PetscFunctionReturn(PETSC_SUCCESS);
5494 }
5495 
5496 /*@
5497   DMGetCellDS - Get the `PetscDS` defined on a given cell
5498 
5499   Not Collective
5500 
5501   Input Parameters:
5502 + dm    - The `DM`
5503 - point - Cell for the `PetscDS`
5504 
5505   Output Parameters:
5506 + ds   - The `PetscDS` defined on the given cell
5507 - dsIn - The `PetscDS` for input on the given cell, or NULL if the same ds
5508 
5509   Level: developer
5510 
5511 .seealso: [](ch_dmbase), `DM`, `DMGetDS()`, `DMSetRegionDS()`
5512 @*/
5513 PetscErrorCode DMGetCellDS(DM dm, PetscInt point, PetscDS *ds, PetscDS *dsIn)
5514 {
5515   PetscDS  dsDef = NULL;
5516   PetscInt s;
5517 
5518   PetscFunctionBeginHot;
5519   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
5520   if (ds) PetscAssertPointer(ds, 3);
5521   if (dsIn) PetscAssertPointer(dsIn, 4);
5522   PetscCheck(point >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Mesh point cannot be negative: %" PetscInt_FMT, point);
5523   if (ds) *ds = NULL;
5524   if (dsIn) *dsIn = NULL;
5525   for (s = 0; s < dm->Nds; ++s) {
5526     PetscInt val;
5527 
5528     if (!dm->probs[s].label) {
5529       dsDef = dm->probs[s].ds;
5530     } else {
5531       PetscCall(DMLabelGetValue(dm->probs[s].label, point, &val));
5532       if (val >= 0) {
5533         if (ds) *ds = dm->probs[s].ds;
5534         if (dsIn) *dsIn = dm->probs[s].dsIn;
5535         break;
5536       }
5537     }
5538   }
5539   if (ds && !*ds) *ds = dsDef;
5540   PetscFunctionReturn(PETSC_SUCCESS);
5541 }
5542 
5543 /*@
5544   DMGetRegionDS - Get the `PetscDS` for a given mesh region, defined by a `DMLabel`
5545 
5546   Not Collective
5547 
5548   Input Parameters:
5549 + dm    - The `DM`
5550 - label - The `DMLabel` defining the mesh region, or `NULL` for the entire mesh
5551 
5552   Output Parameters:
5553 + fields - The `IS` containing the `DM` field numbers for the fields in this `PetscDS`, or `NULL`
5554 . ds     - The `PetscDS` defined on the given region, or `NULL`
5555 - dsIn   - The `PetscDS` for input in the given region, or `NULL`
5556 
5557   Level: advanced
5558 
5559   Note:
5560   If a non-`NULL` label is given, but there is no `PetscDS` on that specific label,
5561   the `PetscDS` for the full domain (if present) is returned. Returns with
5562   fields = `NULL` and ds = `NULL` if there is no `PetscDS` for the full domain.
5563 
5564 .seealso: [](ch_dmbase), `DM`, `DMGetRegionNumDS()`, `DMSetRegionDS()`, `DMGetDS()`, `DMGetCellDS()`
5565 @*/
5566 PetscErrorCode DMGetRegionDS(DM dm, DMLabel label, IS *fields, PetscDS *ds, PetscDS *dsIn)
5567 {
5568   PetscInt Nds = dm->Nds, s;
5569 
5570   PetscFunctionBegin;
5571   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
5572   if (label) PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 2);
5573   if (fields) {
5574     PetscAssertPointer(fields, 3);
5575     *fields = NULL;
5576   }
5577   if (ds) {
5578     PetscAssertPointer(ds, 4);
5579     *ds = NULL;
5580   }
5581   if (dsIn) {
5582     PetscAssertPointer(dsIn, 5);
5583     *dsIn = NULL;
5584   }
5585   for (s = 0; s < Nds; ++s) {
5586     if (dm->probs[s].label == label || !dm->probs[s].label) {
5587       if (fields) *fields = dm->probs[s].fields;
5588       if (ds) *ds = dm->probs[s].ds;
5589       if (dsIn) *dsIn = dm->probs[s].dsIn;
5590       if (dm->probs[s].label) PetscFunctionReturn(PETSC_SUCCESS);
5591     }
5592   }
5593   PetscFunctionReturn(PETSC_SUCCESS);
5594 }
5595 
5596 /*@
5597   DMSetRegionDS - Set the `PetscDS` for a given mesh region, defined by a `DMLabel`
5598 
5599   Collective
5600 
5601   Input Parameters:
5602 + dm     - The `DM`
5603 . label  - The `DMLabel` defining the mesh region, or `NULL` for the entire mesh
5604 . fields - The `IS` containing the `DM` field numbers for the fields in this `PetscDS`, or `NULL` for all fields
5605 . ds     - The `PetscDS` defined on the given region
5606 - dsIn   - The `PetscDS` for input on the given cell, or `NULL` if it is the same `PetscDS`
5607 
5608   Level: advanced
5609 
5610   Note:
5611   If the label has a `PetscDS` defined, it will be replaced. Otherwise, it will be added to the `DM`. If the `PetscDS` is replaced,
5612   the fields argument is ignored.
5613 
5614 .seealso: [](ch_dmbase), `DM`, `DMGetRegionDS()`, `DMSetRegionNumDS()`, `DMGetDS()`, `DMGetCellDS()`
5615 @*/
5616 PetscErrorCode DMSetRegionDS(DM dm, DMLabel label, IS fields, PetscDS ds, PetscDS dsIn)
5617 {
5618   PetscInt Nds = dm->Nds, s;
5619 
5620   PetscFunctionBegin;
5621   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
5622   if (label) PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 2);
5623   if (fields) PetscValidHeaderSpecific(fields, IS_CLASSID, 3);
5624   PetscValidHeaderSpecific(ds, PETSCDS_CLASSID, 4);
5625   if (dsIn) PetscValidHeaderSpecific(dsIn, PETSCDS_CLASSID, 5);
5626   for (s = 0; s < Nds; ++s) {
5627     if (dm->probs[s].label == label) {
5628       PetscCall(PetscDSDestroy(&dm->probs[s].ds));
5629       PetscCall(PetscDSDestroy(&dm->probs[s].dsIn));
5630       dm->probs[s].ds   = ds;
5631       dm->probs[s].dsIn = dsIn;
5632       PetscFunctionReturn(PETSC_SUCCESS);
5633     }
5634   }
5635   PetscCall(DMDSEnlarge_Static(dm, Nds + 1));
5636   PetscCall(PetscObjectReference((PetscObject)label));
5637   PetscCall(PetscObjectReference((PetscObject)fields));
5638   PetscCall(PetscObjectReference((PetscObject)ds));
5639   PetscCall(PetscObjectReference((PetscObject)dsIn));
5640   if (!label) {
5641     /* Put the NULL label at the front, so it is returned as the default */
5642     for (s = Nds - 1; s >= 0; --s) dm->probs[s + 1] = dm->probs[s];
5643     Nds = 0;
5644   }
5645   dm->probs[Nds].label  = label;
5646   dm->probs[Nds].fields = fields;
5647   dm->probs[Nds].ds     = ds;
5648   dm->probs[Nds].dsIn   = dsIn;
5649   PetscFunctionReturn(PETSC_SUCCESS);
5650 }
5651 
5652 /*@
5653   DMGetRegionNumDS - Get the `PetscDS` for a given mesh region, defined by the region number
5654 
5655   Not Collective
5656 
5657   Input Parameters:
5658 + dm  - The `DM`
5659 - num - The region number, in [0, Nds)
5660 
5661   Output Parameters:
5662 + label  - The region label, or `NULL`
5663 . fields - The `IS` containing the `DM` field numbers for the fields in this `PetscDS`, or `NULL`
5664 . ds     - The `PetscDS` defined on the given region, or `NULL`
5665 - dsIn   - The `PetscDS` for input in the given region, or `NULL`
5666 
5667   Level: advanced
5668 
5669 .seealso: [](ch_dmbase), `DM`, `DMGetRegionDS()`, `DMSetRegionDS()`, `DMGetDS()`, `DMGetCellDS()`
5670 @*/
5671 PetscErrorCode DMGetRegionNumDS(DM dm, PetscInt num, DMLabel *label, IS *fields, PetscDS *ds, PetscDS *dsIn)
5672 {
5673   PetscInt Nds;
5674 
5675   PetscFunctionBegin;
5676   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
5677   PetscCall(DMGetNumDS(dm, &Nds));
5678   PetscCheck((num >= 0) && (num < Nds), PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Region number %" PetscInt_FMT " is not in [0, %" PetscInt_FMT ")", num, Nds);
5679   if (label) {
5680     PetscAssertPointer(label, 3);
5681     *label = dm->probs[num].label;
5682   }
5683   if (fields) {
5684     PetscAssertPointer(fields, 4);
5685     *fields = dm->probs[num].fields;
5686   }
5687   if (ds) {
5688     PetscAssertPointer(ds, 5);
5689     *ds = dm->probs[num].ds;
5690   }
5691   if (dsIn) {
5692     PetscAssertPointer(dsIn, 6);
5693     *dsIn = dm->probs[num].dsIn;
5694   }
5695   PetscFunctionReturn(PETSC_SUCCESS);
5696 }
5697 
5698 /*@
5699   DMSetRegionNumDS - Set the `PetscDS` for a given mesh region, defined by the region number
5700 
5701   Not Collective
5702 
5703   Input Parameters:
5704 + dm     - The `DM`
5705 . num    - The region number, in [0, Nds)
5706 . label  - The region label, or `NULL`
5707 . fields - The `IS` containing the `DM` field numbers for the fields in this `PetscDS`, or `NULL` to prevent setting
5708 . ds     - The `PetscDS` defined on the given region, or `NULL` to prevent setting
5709 - dsIn   - The `PetscDS` for input on the given cell, or `NULL` if it is the same `PetscDS`
5710 
5711   Level: advanced
5712 
5713 .seealso: [](ch_dmbase), `DM`, `DMGetRegionDS()`, `DMSetRegionDS()`, `DMGetDS()`, `DMGetCellDS()`
5714 @*/
5715 PetscErrorCode DMSetRegionNumDS(DM dm, PetscInt num, DMLabel label, IS fields, PetscDS ds, PetscDS dsIn)
5716 {
5717   PetscInt Nds;
5718 
5719   PetscFunctionBegin;
5720   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
5721   if (label) PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 3);
5722   PetscCall(DMGetNumDS(dm, &Nds));
5723   PetscCheck((num >= 0) && (num < Nds), PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Region number %" PetscInt_FMT " is not in [0, %" PetscInt_FMT ")", num, Nds);
5724   PetscCall(PetscObjectReference((PetscObject)label));
5725   PetscCall(DMLabelDestroy(&dm->probs[num].label));
5726   dm->probs[num].label = label;
5727   if (fields) {
5728     PetscValidHeaderSpecific(fields, IS_CLASSID, 4);
5729     PetscCall(PetscObjectReference((PetscObject)fields));
5730     PetscCall(ISDestroy(&dm->probs[num].fields));
5731     dm->probs[num].fields = fields;
5732   }
5733   if (ds) {
5734     PetscValidHeaderSpecific(ds, PETSCDS_CLASSID, 5);
5735     PetscCall(PetscObjectReference((PetscObject)ds));
5736     PetscCall(PetscDSDestroy(&dm->probs[num].ds));
5737     dm->probs[num].ds = ds;
5738   }
5739   if (dsIn) {
5740     PetscValidHeaderSpecific(dsIn, PETSCDS_CLASSID, 6);
5741     PetscCall(PetscObjectReference((PetscObject)dsIn));
5742     PetscCall(PetscDSDestroy(&dm->probs[num].dsIn));
5743     dm->probs[num].dsIn = dsIn;
5744   }
5745   PetscFunctionReturn(PETSC_SUCCESS);
5746 }
5747 
5748 /*@
5749   DMFindRegionNum - Find the region number for a given `PetscDS`, or -1 if it is not found.
5750 
5751   Not Collective
5752 
5753   Input Parameters:
5754 + dm - The `DM`
5755 - ds - The `PetscDS` defined on the given region
5756 
5757   Output Parameter:
5758 . num - The region number, in [0, Nds), or -1 if not found
5759 
5760   Level: advanced
5761 
5762 .seealso: [](ch_dmbase), `DM`, `DMGetRegionNumDS()`, `DMGetRegionDS()`, `DMSetRegionDS()`, `DMGetDS()`, `DMGetCellDS()`
5763 @*/
5764 PetscErrorCode DMFindRegionNum(DM dm, PetscDS ds, PetscInt *num)
5765 {
5766   PetscInt Nds, n;
5767 
5768   PetscFunctionBegin;
5769   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
5770   PetscValidHeaderSpecific(ds, PETSCDS_CLASSID, 2);
5771   PetscAssertPointer(num, 3);
5772   PetscCall(DMGetNumDS(dm, &Nds));
5773   for (n = 0; n < Nds; ++n)
5774     if (ds == dm->probs[n].ds) break;
5775   if (n >= Nds) *num = -1;
5776   else *num = n;
5777   PetscFunctionReturn(PETSC_SUCCESS);
5778 }
5779 
5780 /*@C
5781   DMCreateFEDefault - Create a `PetscFE` based on the celltype for the mesh
5782 
5783   Not Collective
5784 
5785   Input Parameters:
5786 + dm     - The `DM`
5787 . Nc     - The number of components for the field
5788 . prefix - The options prefix for the output `PetscFE`, or `NULL`
5789 - qorder - The quadrature order or `PETSC_DETERMINE` to use `PetscSpace` polynomial degree
5790 
5791   Output Parameter:
5792 . fem - The `PetscFE`
5793 
5794   Level: intermediate
5795 
5796   Note:
5797   This is a convenience method that just calls `PetscFECreateByCell()` underneath.
5798 
5799 .seealso: [](ch_dmbase), `DM`, `PetscFECreateByCell()`, `DMAddField()`, `DMCreateDS()`, `DMGetCellDS()`, `DMGetRegionDS()`
5800 @*/
5801 PetscErrorCode DMCreateFEDefault(DM dm, PetscInt Nc, const char prefix[], PetscInt qorder, PetscFE *fem)
5802 {
5803   DMPolytopeType ct;
5804   PetscInt       dim, cStart;
5805 
5806   PetscFunctionBegin;
5807   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
5808   PetscValidLogicalCollectiveInt(dm, Nc, 2);
5809   if (prefix) PetscAssertPointer(prefix, 3);
5810   PetscValidLogicalCollectiveInt(dm, qorder, 4);
5811   PetscAssertPointer(fem, 5);
5812   PetscCall(DMGetDimension(dm, &dim));
5813   PetscCall(DMPlexGetHeightStratum(dm, 0, &cStart, NULL));
5814   PetscCall(DMPlexGetCellType(dm, cStart, &ct));
5815   PetscCall(PetscFECreateByCell(PETSC_COMM_SELF, dim, Nc, ct, prefix, qorder, fem));
5816   PetscFunctionReturn(PETSC_SUCCESS);
5817 }
5818 
5819 /*@
5820   DMCreateDS - Create the discrete systems for the `DM` based upon the fields added to the `DM`
5821 
5822   Collective
5823 
5824   Input Parameter:
5825 . dm - The `DM`
5826 
5827   Options Database Key:
5828 . -dm_petscds_view - View all the `PetscDS` objects in this `DM`
5829 
5830   Level: intermediate
5831 
5832 .seealso: [](ch_dmbase), `DM`, `DMSetField`, `DMAddField()`, `DMGetDS()`, `DMGetCellDS()`, `DMGetRegionDS()`, `DMSetRegionDS()`
5833 @*/
5834 PetscErrorCode DMCreateDS(DM dm)
5835 {
5836   MPI_Comm  comm;
5837   PetscDS   dsDef;
5838   DMLabel  *labelSet;
5839   PetscInt  dE, Nf = dm->Nf, f, s, Nl, l, Ndef, k;
5840   PetscBool doSetup = PETSC_TRUE, flg;
5841 
5842   PetscFunctionBegin;
5843   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
5844   if (!dm->fields) PetscFunctionReturn(PETSC_SUCCESS);
5845   PetscCall(PetscObjectGetComm((PetscObject)dm, &comm));
5846   PetscCall(DMGetCoordinateDim(dm, &dE));
5847   /* Determine how many regions we have */
5848   PetscCall(PetscMalloc1(Nf, &labelSet));
5849   Nl   = 0;
5850   Ndef = 0;
5851   for (f = 0; f < Nf; ++f) {
5852     DMLabel  label = dm->fields[f].label;
5853     PetscInt l;
5854 
5855 #ifdef PETSC_HAVE_LIBCEED
5856     /* Move CEED context to discretizations */
5857     {
5858       PetscClassId id;
5859 
5860       PetscCall(PetscObjectGetClassId(dm->fields[f].disc, &id));
5861       if (id == PETSCFE_CLASSID) {
5862         Ceed ceed;
5863 
5864         PetscCall(DMGetCeed(dm, &ceed));
5865         PetscCall(PetscFESetCeed((PetscFE)dm->fields[f].disc, ceed));
5866       }
5867     }
5868 #endif
5869     if (!label) {
5870       ++Ndef;
5871       continue;
5872     }
5873     for (l = 0; l < Nl; ++l)
5874       if (label == labelSet[l]) break;
5875     if (l < Nl) continue;
5876     labelSet[Nl++] = label;
5877   }
5878   /* Create default DS if there are no labels to intersect with */
5879   PetscCall(DMGetRegionDS(dm, NULL, NULL, &dsDef, NULL));
5880   if (!dsDef && Ndef && !Nl) {
5881     IS        fields;
5882     PetscInt *fld, nf;
5883 
5884     for (f = 0, nf = 0; f < Nf; ++f)
5885       if (!dm->fields[f].label) ++nf;
5886     PetscCheck(nf, comm, PETSC_ERR_PLIB, "All fields have labels, but we are trying to create a default DS");
5887     PetscCall(PetscMalloc1(nf, &fld));
5888     for (f = 0, nf = 0; f < Nf; ++f)
5889       if (!dm->fields[f].label) fld[nf++] = f;
5890     PetscCall(ISCreate(PETSC_COMM_SELF, &fields));
5891     PetscCall(PetscObjectSetOptionsPrefix((PetscObject)fields, "dm_fields_"));
5892     PetscCall(ISSetType(fields, ISGENERAL));
5893     PetscCall(ISGeneralSetIndices(fields, nf, fld, PETSC_OWN_POINTER));
5894 
5895     PetscCall(PetscDSCreate(PETSC_COMM_SELF, &dsDef));
5896     PetscCall(DMSetRegionDS(dm, NULL, fields, dsDef, NULL));
5897     PetscCall(PetscDSDestroy(&dsDef));
5898     PetscCall(ISDestroy(&fields));
5899   }
5900   PetscCall(DMGetRegionDS(dm, NULL, NULL, &dsDef, NULL));
5901   if (dsDef) PetscCall(PetscDSSetCoordinateDimension(dsDef, dE));
5902   /* Intersect labels with default fields */
5903   if (Ndef && Nl) {
5904     DM              plex;
5905     DMLabel         cellLabel;
5906     IS              fieldIS, allcellIS, defcellIS = NULL;
5907     PetscInt       *fields;
5908     const PetscInt *cells;
5909     PetscInt        depth, nf = 0, n, c;
5910 
5911     PetscCall(DMConvert(dm, DMPLEX, &plex));
5912     PetscCall(DMPlexGetDepth(plex, &depth));
5913     PetscCall(DMGetStratumIS(plex, "dim", depth, &allcellIS));
5914     if (!allcellIS) PetscCall(DMGetStratumIS(plex, "depth", depth, &allcellIS));
5915     /* TODO This looks like it only works for one label */
5916     for (l = 0; l < Nl; ++l) {
5917       DMLabel label = labelSet[l];
5918       IS      pointIS;
5919 
5920       PetscCall(ISDestroy(&defcellIS));
5921       PetscCall(DMLabelGetStratumIS(label, 1, &pointIS));
5922       PetscCall(ISDifference(allcellIS, pointIS, &defcellIS));
5923       PetscCall(ISDestroy(&pointIS));
5924     }
5925     PetscCall(ISDestroy(&allcellIS));
5926 
5927     PetscCall(DMLabelCreate(PETSC_COMM_SELF, "defaultCells", &cellLabel));
5928     PetscCall(ISGetLocalSize(defcellIS, &n));
5929     PetscCall(ISGetIndices(defcellIS, &cells));
5930     for (c = 0; c < n; ++c) PetscCall(DMLabelSetValue(cellLabel, cells[c], 1));
5931     PetscCall(ISRestoreIndices(defcellIS, &cells));
5932     PetscCall(ISDestroy(&defcellIS));
5933     PetscCall(DMPlexLabelComplete(plex, cellLabel));
5934 
5935     PetscCall(PetscMalloc1(Ndef, &fields));
5936     for (f = 0; f < Nf; ++f)
5937       if (!dm->fields[f].label) fields[nf++] = f;
5938     PetscCall(ISCreate(PETSC_COMM_SELF, &fieldIS));
5939     PetscCall(PetscObjectSetOptionsPrefix((PetscObject)fieldIS, "dm_fields_"));
5940     PetscCall(ISSetType(fieldIS, ISGENERAL));
5941     PetscCall(ISGeneralSetIndices(fieldIS, nf, fields, PETSC_OWN_POINTER));
5942 
5943     PetscCall(PetscDSCreate(PETSC_COMM_SELF, &dsDef));
5944     PetscCall(DMSetRegionDS(dm, cellLabel, fieldIS, dsDef, NULL));
5945     PetscCall(PetscDSSetCoordinateDimension(dsDef, dE));
5946     PetscCall(DMLabelDestroy(&cellLabel));
5947     PetscCall(PetscDSDestroy(&dsDef));
5948     PetscCall(ISDestroy(&fieldIS));
5949     PetscCall(DMDestroy(&plex));
5950   }
5951   /* Create label DSes
5952      - WE ONLY SUPPORT IDENTICAL OR DISJOINT LABELS
5953   */
5954   /* TODO Should check that labels are disjoint */
5955   for (l = 0; l < Nl; ++l) {
5956     DMLabel   label = labelSet[l];
5957     PetscDS   ds, dsIn = NULL;
5958     IS        fields;
5959     PetscInt *fld, nf;
5960 
5961     PetscCall(PetscDSCreate(PETSC_COMM_SELF, &ds));
5962     for (f = 0, nf = 0; f < Nf; ++f)
5963       if (label == dm->fields[f].label || !dm->fields[f].label) ++nf;
5964     PetscCall(PetscMalloc1(nf, &fld));
5965     for (f = 0, nf = 0; f < Nf; ++f)
5966       if (label == dm->fields[f].label || !dm->fields[f].label) fld[nf++] = f;
5967     PetscCall(ISCreate(PETSC_COMM_SELF, &fields));
5968     PetscCall(PetscObjectSetOptionsPrefix((PetscObject)fields, "dm_fields_"));
5969     PetscCall(ISSetType(fields, ISGENERAL));
5970     PetscCall(ISGeneralSetIndices(fields, nf, fld, PETSC_OWN_POINTER));
5971     PetscCall(PetscDSSetCoordinateDimension(ds, dE));
5972     {
5973       DMPolytopeType ct;
5974       PetscInt       lStart, lEnd;
5975       PetscBool      isCohesiveLocal = PETSC_FALSE, isCohesive;
5976 
5977       PetscCall(DMLabelGetBounds(label, &lStart, &lEnd));
5978       if (lStart >= 0) {
5979         PetscCall(DMPlexGetCellType(dm, lStart, &ct));
5980         switch (ct) {
5981         case DM_POLYTOPE_POINT_PRISM_TENSOR:
5982         case DM_POLYTOPE_SEG_PRISM_TENSOR:
5983         case DM_POLYTOPE_TRI_PRISM_TENSOR:
5984         case DM_POLYTOPE_QUAD_PRISM_TENSOR:
5985           isCohesiveLocal = PETSC_TRUE;
5986           break;
5987         default:
5988           break;
5989         }
5990       }
5991       PetscCall(MPIU_Allreduce(&isCohesiveLocal, &isCohesive, 1, MPIU_BOOL, MPI_LOR, comm));
5992       if (isCohesive) {
5993         PetscCall(PetscDSCreate(PETSC_COMM_SELF, &dsIn));
5994         PetscCall(PetscDSSetCoordinateDimension(dsIn, dE));
5995       }
5996       for (f = 0, nf = 0; f < Nf; ++f) {
5997         if (label == dm->fields[f].label || !dm->fields[f].label) {
5998           if (label == dm->fields[f].label) {
5999             PetscCall(PetscDSSetDiscretization(ds, nf, NULL));
6000             PetscCall(PetscDSSetCohesive(ds, nf, isCohesive));
6001             if (dsIn) {
6002               PetscCall(PetscDSSetDiscretization(dsIn, nf, NULL));
6003               PetscCall(PetscDSSetCohesive(dsIn, nf, isCohesive));
6004             }
6005           }
6006           ++nf;
6007         }
6008       }
6009     }
6010     PetscCall(DMSetRegionDS(dm, label, fields, ds, dsIn));
6011     PetscCall(ISDestroy(&fields));
6012     PetscCall(PetscDSDestroy(&ds));
6013     PetscCall(PetscDSDestroy(&dsIn));
6014   }
6015   PetscCall(PetscFree(labelSet));
6016   /* Set fields in DSes */
6017   for (s = 0; s < dm->Nds; ++s) {
6018     PetscDS         ds     = dm->probs[s].ds;
6019     PetscDS         dsIn   = dm->probs[s].dsIn;
6020     IS              fields = dm->probs[s].fields;
6021     const PetscInt *fld;
6022     PetscInt        nf, dsnf;
6023     PetscBool       isCohesive;
6024 
6025     PetscCall(PetscDSGetNumFields(ds, &dsnf));
6026     PetscCall(PetscDSIsCohesive(ds, &isCohesive));
6027     PetscCall(ISGetLocalSize(fields, &nf));
6028     PetscCall(ISGetIndices(fields, &fld));
6029     for (f = 0; f < nf; ++f) {
6030       PetscObject  disc = dm->fields[fld[f]].disc;
6031       PetscBool    isCohesiveField;
6032       PetscClassId id;
6033 
6034       /* Handle DS with no fields */
6035       if (dsnf) PetscCall(PetscDSGetCohesive(ds, f, &isCohesiveField));
6036       /* If this is a cohesive cell, then regular fields need the lower dimensional discretization */
6037       if (isCohesive) {
6038         if (!isCohesiveField) {
6039           PetscObject bdDisc;
6040 
6041           PetscCall(PetscFEGetHeightSubspace((PetscFE)disc, 1, (PetscFE *)&bdDisc));
6042           PetscCall(PetscDSSetDiscretization(ds, f, bdDisc));
6043           PetscCall(PetscDSSetDiscretization(dsIn, f, disc));
6044         } else {
6045           PetscCall(PetscDSSetDiscretization(ds, f, disc));
6046           PetscCall(PetscDSSetDiscretization(dsIn, f, disc));
6047         }
6048       } else {
6049         PetscCall(PetscDSSetDiscretization(ds, f, disc));
6050       }
6051       /* We allow people to have placeholder fields and construct the Section by hand */
6052       PetscCall(PetscObjectGetClassId(disc, &id));
6053       if ((id != PETSCFE_CLASSID) && (id != PETSCFV_CLASSID)) doSetup = PETSC_FALSE;
6054     }
6055     PetscCall(ISRestoreIndices(fields, &fld));
6056   }
6057   /* Allow k-jet tabulation */
6058   PetscCall(PetscOptionsGetInt(NULL, ((PetscObject)dm)->prefix, "-dm_ds_jet_degree", &k, &flg));
6059   if (flg) {
6060     for (s = 0; s < dm->Nds; ++s) {
6061       PetscDS  ds   = dm->probs[s].ds;
6062       PetscDS  dsIn = dm->probs[s].dsIn;
6063       PetscInt Nf, f;
6064 
6065       PetscCall(PetscDSGetNumFields(ds, &Nf));
6066       for (f = 0; f < Nf; ++f) {
6067         PetscCall(PetscDSSetJetDegree(ds, f, k));
6068         if (dsIn) PetscCall(PetscDSSetJetDegree(dsIn, f, k));
6069       }
6070     }
6071   }
6072   /* Setup DSes */
6073   if (doSetup) {
6074     for (s = 0; s < dm->Nds; ++s) {
6075       if (dm->setfromoptionscalled) {
6076         PetscCall(PetscDSSetFromOptions(dm->probs[s].ds));
6077         if (dm->probs[s].dsIn) PetscCall(PetscDSSetFromOptions(dm->probs[s].dsIn));
6078       }
6079       PetscCall(PetscDSSetUp(dm->probs[s].ds));
6080       if (dm->probs[s].dsIn) PetscCall(PetscDSSetUp(dm->probs[s].dsIn));
6081     }
6082   }
6083   PetscFunctionReturn(PETSC_SUCCESS);
6084 }
6085 
6086 /*@
6087   DMUseTensorOrder - Use a tensor product closure ordering for the default section
6088 
6089   Input Parameters:
6090 + dm     - The DM
6091 - tensor - Flag for tensor order
6092 
6093   Level: developer
6094 
6095 .seealso: `DMPlexSetClosurePermutationTensor()`, `PetscSectionResetClosurePermutation()`
6096 @*/
6097 PetscErrorCode DMUseTensorOrder(DM dm, PetscBool tensor)
6098 {
6099   PetscInt  Nf;
6100   PetscBool reorder = PETSC_TRUE, isPlex;
6101 
6102   PetscFunctionBegin;
6103   PetscCall(PetscObjectTypeCompare((PetscObject)dm, DMPLEX, &isPlex));
6104   PetscCall(DMGetNumFields(dm, &Nf));
6105   for (PetscInt f = 0; f < Nf; ++f) {
6106     PetscObject  obj;
6107     PetscClassId id;
6108 
6109     PetscCall(DMGetField(dm, f, NULL, &obj));
6110     PetscCall(PetscObjectGetClassId(obj, &id));
6111     if (id == PETSCFE_CLASSID) {
6112       PetscSpace sp;
6113       PetscBool  tensor;
6114 
6115       PetscCall(PetscFEGetBasisSpace((PetscFE)obj, &sp));
6116       PetscCall(PetscSpacePolynomialGetTensor(sp, &tensor));
6117       reorder = reorder && tensor ? PETSC_TRUE : PETSC_FALSE;
6118     } else reorder = PETSC_FALSE;
6119   }
6120   if (tensor) {
6121     if (reorder && isPlex) PetscCall(DMPlexSetClosurePermutationTensor(dm, PETSC_DETERMINE, NULL));
6122   } else {
6123     PetscSection s;
6124 
6125     PetscCall(DMGetLocalSection(dm, &s));
6126     if (s) PetscCall(PetscSectionResetClosurePermutation(s));
6127   }
6128   PetscFunctionReturn(PETSC_SUCCESS);
6129 }
6130 
6131 /*@
6132   DMComputeExactSolution - Compute the exact solution for a given `DM`, using the `PetscDS` information.
6133 
6134   Collective
6135 
6136   Input Parameters:
6137 + dm   - The `DM`
6138 - time - The time
6139 
6140   Output Parameters:
6141 + u   - The vector will be filled with exact solution values, or `NULL`
6142 - u_t - The vector will be filled with the time derivative of exact solution values, or `NULL`
6143 
6144   Level: developer
6145 
6146   Note:
6147   The user must call `PetscDSSetExactSolution()` before using this routine
6148 
6149 .seealso: [](ch_dmbase), `DM`, `PetscDSSetExactSolution()`
6150 @*/
6151 PetscErrorCode DMComputeExactSolution(DM dm, PetscReal time, Vec u, Vec u_t)
6152 {
6153   PetscErrorCode (**exacts)(PetscInt, PetscReal, const PetscReal x[], PetscInt, PetscScalar *u, void *ctx);
6154   void   **ectxs;
6155   Vec      locu, locu_t;
6156   PetscInt Nf, Nds, s;
6157 
6158   PetscFunctionBegin;
6159   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
6160   if (u) {
6161     PetscValidHeaderSpecific(u, VEC_CLASSID, 3);
6162     PetscCall(DMGetLocalVector(dm, &locu));
6163     PetscCall(VecSet(locu, 0.));
6164   }
6165   if (u_t) {
6166     PetscValidHeaderSpecific(u_t, VEC_CLASSID, 4);
6167     PetscCall(DMGetLocalVector(dm, &locu_t));
6168     PetscCall(VecSet(locu_t, 0.));
6169   }
6170   PetscCall(DMGetNumFields(dm, &Nf));
6171   PetscCall(PetscMalloc2(Nf, &exacts, Nf, &ectxs));
6172   PetscCall(DMGetNumDS(dm, &Nds));
6173   for (s = 0; s < Nds; ++s) {
6174     PetscDS         ds;
6175     DMLabel         label;
6176     IS              fieldIS;
6177     const PetscInt *fields, id = 1;
6178     PetscInt        dsNf, f;
6179 
6180     PetscCall(DMGetRegionNumDS(dm, s, &label, &fieldIS, &ds, NULL));
6181     PetscCall(PetscDSGetNumFields(ds, &dsNf));
6182     PetscCall(ISGetIndices(fieldIS, &fields));
6183     PetscCall(PetscArrayzero(exacts, Nf));
6184     PetscCall(PetscArrayzero(ectxs, Nf));
6185     if (u) {
6186       for (f = 0; f < dsNf; ++f) PetscCall(PetscDSGetExactSolution(ds, fields[f], &exacts[fields[f]], &ectxs[fields[f]]));
6187       if (label) PetscCall(DMProjectFunctionLabelLocal(dm, time, label, 1, &id, 0, NULL, exacts, ectxs, INSERT_ALL_VALUES, locu));
6188       else PetscCall(DMProjectFunctionLocal(dm, time, exacts, ectxs, INSERT_ALL_VALUES, locu));
6189     }
6190     if (u_t) {
6191       PetscCall(PetscArrayzero(exacts, Nf));
6192       PetscCall(PetscArrayzero(ectxs, Nf));
6193       for (f = 0; f < dsNf; ++f) PetscCall(PetscDSGetExactSolutionTimeDerivative(ds, fields[f], &exacts[fields[f]], &ectxs[fields[f]]));
6194       if (label) PetscCall(DMProjectFunctionLabelLocal(dm, time, label, 1, &id, 0, NULL, exacts, ectxs, INSERT_ALL_VALUES, locu_t));
6195       else PetscCall(DMProjectFunctionLocal(dm, time, exacts, ectxs, INSERT_ALL_VALUES, locu_t));
6196     }
6197     PetscCall(ISRestoreIndices(fieldIS, &fields));
6198   }
6199   if (u) {
6200     PetscCall(PetscObjectSetName((PetscObject)u, "Exact Solution"));
6201     PetscCall(PetscObjectSetOptionsPrefix((PetscObject)u, "exact_"));
6202   }
6203   if (u_t) {
6204     PetscCall(PetscObjectSetName((PetscObject)u, "Exact Solution Time Derivative"));
6205     PetscCall(PetscObjectSetOptionsPrefix((PetscObject)u_t, "exact_t_"));
6206   }
6207   PetscCall(PetscFree2(exacts, ectxs));
6208   if (u) {
6209     PetscCall(DMLocalToGlobalBegin(dm, locu, INSERT_ALL_VALUES, u));
6210     PetscCall(DMLocalToGlobalEnd(dm, locu, INSERT_ALL_VALUES, u));
6211     PetscCall(DMRestoreLocalVector(dm, &locu));
6212   }
6213   if (u_t) {
6214     PetscCall(DMLocalToGlobalBegin(dm, locu_t, INSERT_ALL_VALUES, u_t));
6215     PetscCall(DMLocalToGlobalEnd(dm, locu_t, INSERT_ALL_VALUES, u_t));
6216     PetscCall(DMRestoreLocalVector(dm, &locu_t));
6217   }
6218   PetscFunctionReturn(PETSC_SUCCESS);
6219 }
6220 
6221 static PetscErrorCode DMTransferDS_Internal(DM dm, DMLabel label, IS fields, PetscDS ds, PetscDS dsIn)
6222 {
6223   PetscDS dsNew, dsInNew = NULL;
6224 
6225   PetscFunctionBegin;
6226   PetscCall(PetscDSCreate(PetscObjectComm((PetscObject)ds), &dsNew));
6227   PetscCall(PetscDSCopy(ds, dm, dsNew));
6228   if (dsIn) {
6229     PetscCall(PetscDSCreate(PetscObjectComm((PetscObject)dsIn), &dsInNew));
6230     PetscCall(PetscDSCopy(dsIn, dm, dsInNew));
6231   }
6232   PetscCall(DMSetRegionDS(dm, label, fields, dsNew, dsInNew));
6233   PetscCall(PetscDSDestroy(&dsNew));
6234   PetscCall(PetscDSDestroy(&dsInNew));
6235   PetscFunctionReturn(PETSC_SUCCESS);
6236 }
6237 
6238 /*@
6239   DMCopyDS - Copy the discrete systems for the `DM` into another `DM`
6240 
6241   Collective
6242 
6243   Input Parameter:
6244 . dm - The `DM`
6245 
6246   Output Parameter:
6247 . newdm - The `DM`
6248 
6249   Level: advanced
6250 
6251 .seealso: [](ch_dmbase), `DM`, `DMCopyFields()`, `DMAddField()`, `DMGetDS()`, `DMGetCellDS()`, `DMGetRegionDS()`, `DMSetRegionDS()`
6252 @*/
6253 PetscErrorCode DMCopyDS(DM dm, DM newdm)
6254 {
6255   PetscInt Nds, s;
6256 
6257   PetscFunctionBegin;
6258   if (dm == newdm) PetscFunctionReturn(PETSC_SUCCESS);
6259   PetscCall(DMGetNumDS(dm, &Nds));
6260   PetscCall(DMClearDS(newdm));
6261   for (s = 0; s < Nds; ++s) {
6262     DMLabel  label;
6263     IS       fields;
6264     PetscDS  ds, dsIn, newds;
6265     PetscInt Nbd, bd;
6266 
6267     PetscCall(DMGetRegionNumDS(dm, s, &label, &fields, &ds, &dsIn));
6268     /* TODO: We need to change all keys from labels in the old DM to labels in the new DM */
6269     PetscCall(DMTransferDS_Internal(newdm, label, fields, ds, dsIn));
6270     /* Complete new labels in the new DS */
6271     PetscCall(DMGetRegionDS(newdm, label, NULL, &newds, NULL));
6272     PetscCall(PetscDSGetNumBoundary(newds, &Nbd));
6273     for (bd = 0; bd < Nbd; ++bd) {
6274       PetscWeakForm wf;
6275       DMLabel       label;
6276       PetscInt      field;
6277 
6278       PetscCall(PetscDSGetBoundary(newds, bd, &wf, NULL, NULL, &label, NULL, NULL, &field, NULL, NULL, NULL, NULL, NULL));
6279       PetscCall(PetscWeakFormReplaceLabel(wf, label));
6280     }
6281   }
6282   PetscCall(DMCompleteBCLabels_Internal(newdm));
6283   PetscFunctionReturn(PETSC_SUCCESS);
6284 }
6285 
6286 /*@
6287   DMCopyDisc - Copy the fields and discrete systems for the `DM` into another `DM`
6288 
6289   Collective
6290 
6291   Input Parameter:
6292 . dm - The `DM`
6293 
6294   Output Parameter:
6295 . newdm - The `DM`
6296 
6297   Level: advanced
6298 
6299   Developer Notes:
6300   Really ugly name, nothing in PETSc is called a `Disc` plus it is an ugly abbreviation
6301 
6302 .seealso: [](ch_dmbase), `DM`, `DMCopyFields()`, `DMCopyDS()`
6303 @*/
6304 PetscErrorCode DMCopyDisc(DM dm, DM newdm)
6305 {
6306   PetscFunctionBegin;
6307   PetscCall(DMCopyFields(dm, newdm));
6308   PetscCall(DMCopyDS(dm, newdm));
6309   PetscFunctionReturn(PETSC_SUCCESS);
6310 }
6311 
6312 /*@
6313   DMGetDimension - Return the topological dimension of the `DM`
6314 
6315   Not Collective
6316 
6317   Input Parameter:
6318 . dm - The `DM`
6319 
6320   Output Parameter:
6321 . dim - The topological dimension
6322 
6323   Level: beginner
6324 
6325 .seealso: [](ch_dmbase), `DM`, `DMSetDimension()`, `DMCreate()`
6326 @*/
6327 PetscErrorCode DMGetDimension(DM dm, PetscInt *dim)
6328 {
6329   PetscFunctionBegin;
6330   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
6331   PetscAssertPointer(dim, 2);
6332   *dim = dm->dim;
6333   PetscFunctionReturn(PETSC_SUCCESS);
6334 }
6335 
6336 /*@
6337   DMSetDimension - Set the topological dimension of the `DM`
6338 
6339   Collective
6340 
6341   Input Parameters:
6342 + dm  - The `DM`
6343 - dim - The topological dimension
6344 
6345   Level: beginner
6346 
6347 .seealso: [](ch_dmbase), `DM`, `DMGetDimension()`, `DMCreate()`
6348 @*/
6349 PetscErrorCode DMSetDimension(DM dm, PetscInt dim)
6350 {
6351   PetscDS  ds;
6352   PetscInt Nds, n;
6353 
6354   PetscFunctionBegin;
6355   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
6356   PetscValidLogicalCollectiveInt(dm, dim, 2);
6357   dm->dim = dim;
6358   if (dm->dim >= 0) {
6359     PetscCall(DMGetNumDS(dm, &Nds));
6360     for (n = 0; n < Nds; ++n) {
6361       PetscCall(DMGetRegionNumDS(dm, n, NULL, NULL, &ds, NULL));
6362       if (ds->dimEmbed < 0) PetscCall(PetscDSSetCoordinateDimension(ds, dim));
6363     }
6364   }
6365   PetscFunctionReturn(PETSC_SUCCESS);
6366 }
6367 
6368 /*@
6369   DMGetDimPoints - Get the half-open interval for all points of a given dimension
6370 
6371   Collective
6372 
6373   Input Parameters:
6374 + dm  - the `DM`
6375 - dim - the dimension
6376 
6377   Output Parameters:
6378 + pStart - The first point of the given dimension
6379 - pEnd   - The first point following points of the given dimension
6380 
6381   Level: intermediate
6382 
6383   Note:
6384   The points are vertices in the Hasse diagram encoding the topology. This is explained in
6385   https://arxiv.org/abs/0908.4427. If no points exist of this dimension in the storage scheme,
6386   then the interval is empty.
6387 
6388 .seealso: [](ch_dmbase), `DM`, `DMPLEX`, `DMPlexGetDepthStratum()`, `DMPlexGetHeightStratum()`
6389 @*/
6390 PetscErrorCode DMGetDimPoints(DM dm, PetscInt dim, PetscInt *pStart, PetscInt *pEnd)
6391 {
6392   PetscInt d;
6393 
6394   PetscFunctionBegin;
6395   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
6396   PetscCall(DMGetDimension(dm, &d));
6397   PetscCheck((dim >= 0) && (dim <= d), PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Invalid dimension %" PetscInt_FMT, dim);
6398   PetscUseTypeMethod(dm, getdimpoints, dim, pStart, pEnd);
6399   PetscFunctionReturn(PETSC_SUCCESS);
6400 }
6401 
6402 /*@
6403   DMGetOutputDM - Retrieve the `DM` associated with the layout for output
6404 
6405   Collective
6406 
6407   Input Parameter:
6408 . dm - The original `DM`
6409 
6410   Output Parameter:
6411 . odm - The `DM` which provides the layout for output
6412 
6413   Level: intermediate
6414 
6415   Note:
6416   In some situations the vector obtained with `DMCreateGlobalVector()` excludes points for degrees of freedom that are associated with fixed (Dirichelet) boundary
6417   conditions since the algebraic solver does not solve for those variables. The output `DM` includes these excluded points and its global vector contains the
6418   locations for those dof so that they can be output to a file or other viewer along with the unconstrained dof.
6419 
6420 .seealso: [](ch_dmbase), `DM`, `VecView()`, `DMGetGlobalSection()`, `DMCreateGlobalVector()`, `PetscSectionHasConstraints()`, `DMSetGlobalSection()`
6421 @*/
6422 PetscErrorCode DMGetOutputDM(DM dm, DM *odm)
6423 {
6424   PetscSection section;
6425   IS           perm;
6426   PetscBool    hasConstraints, newDM, gnewDM;
6427 
6428   PetscFunctionBegin;
6429   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
6430   PetscAssertPointer(odm, 2);
6431   PetscCall(DMGetLocalSection(dm, &section));
6432   PetscCall(PetscSectionHasConstraints(section, &hasConstraints));
6433   PetscCall(PetscSectionGetPermutation(section, &perm));
6434   newDM = hasConstraints || perm ? PETSC_TRUE : PETSC_FALSE;
6435   PetscCall(MPIU_Allreduce(&newDM, &gnewDM, 1, MPIU_BOOL, MPI_LOR, PetscObjectComm((PetscObject)dm)));
6436   if (!gnewDM) {
6437     *odm = dm;
6438     PetscFunctionReturn(PETSC_SUCCESS);
6439   }
6440   if (!dm->dmBC) {
6441     PetscSection newSection, gsection;
6442     PetscSF      sf;
6443     PetscBool    usePerm = dm->ignorePermOutput ? PETSC_FALSE : PETSC_TRUE;
6444 
6445     PetscCall(DMClone(dm, &dm->dmBC));
6446     PetscCall(DMCopyDisc(dm, dm->dmBC));
6447     PetscCall(PetscSectionClone(section, &newSection));
6448     PetscCall(DMSetLocalSection(dm->dmBC, newSection));
6449     PetscCall(PetscSectionDestroy(&newSection));
6450     PetscCall(DMGetPointSF(dm->dmBC, &sf));
6451     PetscCall(PetscSectionCreateGlobalSection(section, sf, usePerm, PETSC_TRUE, PETSC_FALSE, &gsection));
6452     PetscCall(DMSetGlobalSection(dm->dmBC, gsection));
6453     PetscCall(PetscSectionDestroy(&gsection));
6454   }
6455   *odm = dm->dmBC;
6456   PetscFunctionReturn(PETSC_SUCCESS);
6457 }
6458 
6459 /*@
6460   DMGetOutputSequenceNumber - Retrieve the sequence number/value for output
6461 
6462   Input Parameter:
6463 . dm - The original `DM`
6464 
6465   Output Parameters:
6466 + num - The output sequence number
6467 - val - The output sequence value
6468 
6469   Level: intermediate
6470 
6471   Note:
6472   This is intended for output that should appear in sequence, for instance
6473   a set of timesteps in an `PETSCVIEWERHDF5` file, or a set of realizations of a stochastic system.
6474 
6475   Developer Notes:
6476   The `DM` serves as a convenient place to store the current iteration value. The iteration is not
6477   not directly related to the `DM`.
6478 
6479 .seealso: [](ch_dmbase), `DM`, `VecView()`
6480 @*/
6481 PetscErrorCode DMGetOutputSequenceNumber(DM dm, PetscInt *num, PetscReal *val)
6482 {
6483   PetscFunctionBegin;
6484   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
6485   if (num) {
6486     PetscAssertPointer(num, 2);
6487     *num = dm->outputSequenceNum;
6488   }
6489   if (val) {
6490     PetscAssertPointer(val, 3);
6491     *val = dm->outputSequenceVal;
6492   }
6493   PetscFunctionReturn(PETSC_SUCCESS);
6494 }
6495 
6496 /*@
6497   DMSetOutputSequenceNumber - Set the sequence number/value for output
6498 
6499   Input Parameters:
6500 + dm  - The original `DM`
6501 . num - The output sequence number
6502 - val - The output sequence value
6503 
6504   Level: intermediate
6505 
6506   Note:
6507   This is intended for output that should appear in sequence, for instance
6508   a set of timesteps in an `PETSCVIEWERHDF5` file, or a set of realizations of a stochastic system.
6509 
6510 .seealso: [](ch_dmbase), `DM`, `VecView()`
6511 @*/
6512 PetscErrorCode DMSetOutputSequenceNumber(DM dm, PetscInt num, PetscReal val)
6513 {
6514   PetscFunctionBegin;
6515   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
6516   dm->outputSequenceNum = num;
6517   dm->outputSequenceVal = val;
6518   PetscFunctionReturn(PETSC_SUCCESS);
6519 }
6520 
6521 /*@C
6522   DMOutputSequenceLoad - Retrieve the sequence value from a `PetscViewer`
6523 
6524   Input Parameters:
6525 + dm     - The original `DM`
6526 . viewer - The viewer to get it from
6527 . name   - The sequence name
6528 - num    - The output sequence number
6529 
6530   Output Parameter:
6531 . val - The output sequence value
6532 
6533   Level: intermediate
6534 
6535   Note:
6536   This is intended for output that should appear in sequence, for instance
6537   a set of timesteps in an `PETSCVIEWERHDF5` file, or a set of realizations of a stochastic system.
6538 
6539   Developer Notes:
6540   It is unclear at the user API level why a `DM` is needed as input
6541 
6542 .seealso: [](ch_dmbase), `DM`, `DMGetOutputSequenceNumber()`, `DMSetOutputSequenceNumber()`, `VecView()`
6543 @*/
6544 PetscErrorCode DMOutputSequenceLoad(DM dm, PetscViewer viewer, const char *name, PetscInt num, PetscReal *val)
6545 {
6546   PetscBool ishdf5;
6547 
6548   PetscFunctionBegin;
6549   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
6550   PetscValidHeaderSpecific(viewer, PETSC_VIEWER_CLASSID, 2);
6551   PetscAssertPointer(val, 5);
6552   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERHDF5, &ishdf5));
6553   if (ishdf5) {
6554 #if defined(PETSC_HAVE_HDF5)
6555     PetscScalar value;
6556 
6557     PetscCall(DMSequenceLoad_HDF5_Internal(dm, name, num, &value, viewer));
6558     *val = PetscRealPart(value);
6559 #endif
6560   } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Invalid viewer; open viewer with PetscViewerHDF5Open()");
6561   PetscFunctionReturn(PETSC_SUCCESS);
6562 }
6563 
6564 /*@
6565   DMGetUseNatural - Get the flag for creating a mapping to the natural order when a `DM` is (re)distributed in parallel
6566 
6567   Not Collective
6568 
6569   Input Parameter:
6570 . dm - The `DM`
6571 
6572   Output Parameter:
6573 . useNatural - `PETSC_TRUE` to build the mapping to a natural order during distribution
6574 
6575   Level: beginner
6576 
6577 .seealso: [](ch_dmbase), `DM`, `DMSetUseNatural()`, `DMCreate()`
6578 @*/
6579 PetscErrorCode DMGetUseNatural(DM dm, PetscBool *useNatural)
6580 {
6581   PetscFunctionBegin;
6582   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
6583   PetscAssertPointer(useNatural, 2);
6584   *useNatural = dm->useNatural;
6585   PetscFunctionReturn(PETSC_SUCCESS);
6586 }
6587 
6588 /*@
6589   DMSetUseNatural - Set the flag for creating a mapping to the natural order when a `DM` is (re)distributed in parallel
6590 
6591   Collective
6592 
6593   Input Parameters:
6594 + dm         - The `DM`
6595 - useNatural - `PETSC_TRUE` to build the mapping to a natural order during distribution
6596 
6597   Note:
6598   This also causes the map to be build after `DMCreateSubDM()` and `DMCreateSuperDM()`
6599 
6600   Level: beginner
6601 
6602 .seealso: [](ch_dmbase), `DM`, `DMGetUseNatural()`, `DMCreate()`, `DMPlexDistribute()`, `DMCreateSubDM()`, `DMCreateSuperDM()`
6603 @*/
6604 PetscErrorCode DMSetUseNatural(DM dm, PetscBool useNatural)
6605 {
6606   PetscFunctionBegin;
6607   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
6608   PetscValidLogicalCollectiveBool(dm, useNatural, 2);
6609   dm->useNatural = useNatural;
6610   PetscFunctionReturn(PETSC_SUCCESS);
6611 }
6612 
6613 /*@C
6614   DMCreateLabel - Create a label of the given name if it does not already exist in the `DM`
6615 
6616   Not Collective
6617 
6618   Input Parameters:
6619 + dm   - The `DM` object
6620 - name - The label name
6621 
6622   Level: intermediate
6623 
6624 .seealso: [](ch_dmbase), `DM`, `DMLabelCreate()`, `DMHasLabel()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMGetStratumIS()`
6625 @*/
6626 PetscErrorCode DMCreateLabel(DM dm, const char name[])
6627 {
6628   PetscBool flg;
6629   DMLabel   label;
6630 
6631   PetscFunctionBegin;
6632   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
6633   PetscAssertPointer(name, 2);
6634   PetscCall(DMHasLabel(dm, name, &flg));
6635   if (!flg) {
6636     PetscCall(DMLabelCreate(PETSC_COMM_SELF, name, &label));
6637     PetscCall(DMAddLabel(dm, label));
6638     PetscCall(DMLabelDestroy(&label));
6639   }
6640   PetscFunctionReturn(PETSC_SUCCESS);
6641 }
6642 
6643 /*@C
6644   DMCreateLabelAtIndex - Create a label of the given name at the given index. If it already exists in the `DM`, move it to this index.
6645 
6646   Not Collective
6647 
6648   Input Parameters:
6649 + dm   - The `DM` object
6650 . l    - The index for the label
6651 - name - The label name
6652 
6653   Level: intermediate
6654 
6655 .seealso: [](ch_dmbase), `DM`, `DMCreateLabel()`, `DMLabelCreate()`, `DMHasLabel()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMGetStratumIS()`
6656 @*/
6657 PetscErrorCode DMCreateLabelAtIndex(DM dm, PetscInt l, const char name[])
6658 {
6659   DMLabelLink orig, prev = NULL;
6660   DMLabel     label;
6661   PetscInt    Nl, m;
6662   PetscBool   flg, match;
6663   const char *lname;
6664 
6665   PetscFunctionBegin;
6666   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
6667   PetscAssertPointer(name, 3);
6668   PetscCall(DMHasLabel(dm, name, &flg));
6669   if (!flg) {
6670     PetscCall(DMLabelCreate(PETSC_COMM_SELF, name, &label));
6671     PetscCall(DMAddLabel(dm, label));
6672     PetscCall(DMLabelDestroy(&label));
6673   }
6674   PetscCall(DMGetNumLabels(dm, &Nl));
6675   PetscCheck(l < Nl, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Label index %" PetscInt_FMT " must be in [0, %" PetscInt_FMT ")", l, Nl);
6676   for (m = 0, orig = dm->labels; m < Nl; ++m, prev = orig, orig = orig->next) {
6677     PetscCall(PetscObjectGetName((PetscObject)orig->label, &lname));
6678     PetscCall(PetscStrcmp(name, lname, &match));
6679     if (match) break;
6680   }
6681   if (m == l) PetscFunctionReturn(PETSC_SUCCESS);
6682   if (!m) dm->labels = orig->next;
6683   else prev->next = orig->next;
6684   if (!l) {
6685     orig->next = dm->labels;
6686     dm->labels = orig;
6687   } else {
6688     for (m = 0, prev = dm->labels; m < l - 1; ++m, prev = prev->next)
6689       ;
6690     orig->next = prev->next;
6691     prev->next = orig;
6692   }
6693   PetscFunctionReturn(PETSC_SUCCESS);
6694 }
6695 
6696 /*@C
6697   DMGetLabelValue - Get the value in a `DMLabel` for the given point, with -1 as the default
6698 
6699   Not Collective
6700 
6701   Input Parameters:
6702 + dm    - The `DM` object
6703 . name  - The label name
6704 - point - The mesh point
6705 
6706   Output Parameter:
6707 . value - The label value for this point, or -1 if the point is not in the label
6708 
6709   Level: beginner
6710 
6711 .seealso: [](ch_dmbase), `DM`, `DMLabelGetValue()`, `DMSetLabelValue()`, `DMGetStratumIS()`
6712 @*/
6713 PetscErrorCode DMGetLabelValue(DM dm, const char name[], PetscInt point, PetscInt *value)
6714 {
6715   DMLabel label;
6716 
6717   PetscFunctionBegin;
6718   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
6719   PetscAssertPointer(name, 2);
6720   PetscCall(DMGetLabel(dm, name, &label));
6721   PetscCheck(label, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "No label named %s was found", name);
6722   PetscCall(DMLabelGetValue(label, point, value));
6723   PetscFunctionReturn(PETSC_SUCCESS);
6724 }
6725 
6726 /*@C
6727   DMSetLabelValue - Add a point to a `DMLabel` with given value
6728 
6729   Not Collective
6730 
6731   Input Parameters:
6732 + dm    - The `DM` object
6733 . name  - The label name
6734 . point - The mesh point
6735 - value - The label value for this point
6736 
6737   Output Parameter:
6738 
6739   Level: beginner
6740 
6741 .seealso: [](ch_dmbase), `DM`, `DMLabelSetValue()`, `DMGetStratumIS()`, `DMClearLabelValue()`
6742 @*/
6743 PetscErrorCode DMSetLabelValue(DM dm, const char name[], PetscInt point, PetscInt value)
6744 {
6745   DMLabel label;
6746 
6747   PetscFunctionBegin;
6748   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
6749   PetscAssertPointer(name, 2);
6750   PetscCall(DMGetLabel(dm, name, &label));
6751   if (!label) {
6752     PetscCall(DMCreateLabel(dm, name));
6753     PetscCall(DMGetLabel(dm, name, &label));
6754   }
6755   PetscCall(DMLabelSetValue(label, point, value));
6756   PetscFunctionReturn(PETSC_SUCCESS);
6757 }
6758 
6759 /*@C
6760   DMClearLabelValue - Remove a point from a `DMLabel` with given value
6761 
6762   Not Collective
6763 
6764   Input Parameters:
6765 + dm    - The `DM` object
6766 . name  - The label name
6767 . point - The mesh point
6768 - value - The label value for this point
6769 
6770   Level: beginner
6771 
6772 .seealso: [](ch_dmbase), `DM`, `DMLabelClearValue()`, `DMSetLabelValue()`, `DMGetStratumIS()`
6773 @*/
6774 PetscErrorCode DMClearLabelValue(DM dm, const char name[], PetscInt point, PetscInt value)
6775 {
6776   DMLabel label;
6777 
6778   PetscFunctionBegin;
6779   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
6780   PetscAssertPointer(name, 2);
6781   PetscCall(DMGetLabel(dm, name, &label));
6782   if (!label) PetscFunctionReturn(PETSC_SUCCESS);
6783   PetscCall(DMLabelClearValue(label, point, value));
6784   PetscFunctionReturn(PETSC_SUCCESS);
6785 }
6786 
6787 /*@C
6788   DMGetLabelSize - Get the value of `DMLabelGetNumValues()` of a `DMLabel` in the `DM`
6789 
6790   Not Collective
6791 
6792   Input Parameters:
6793 + dm   - The `DM` object
6794 - name - The label name
6795 
6796   Output Parameter:
6797 . size - The number of different integer ids, or 0 if the label does not exist
6798 
6799   Level: beginner
6800 
6801   Developer Notes:
6802   This should be renamed to something like `DMGetLabelNumValues()` or removed.
6803 
6804 .seealso: [](ch_dmbase), `DM`, `DMLabelGetNumValues()`, `DMSetLabelValue()`, `DMGetLabel()`
6805 @*/
6806 PetscErrorCode DMGetLabelSize(DM dm, const char name[], PetscInt *size)
6807 {
6808   DMLabel label;
6809 
6810   PetscFunctionBegin;
6811   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
6812   PetscAssertPointer(name, 2);
6813   PetscAssertPointer(size, 3);
6814   PetscCall(DMGetLabel(dm, name, &label));
6815   *size = 0;
6816   if (!label) PetscFunctionReturn(PETSC_SUCCESS);
6817   PetscCall(DMLabelGetNumValues(label, size));
6818   PetscFunctionReturn(PETSC_SUCCESS);
6819 }
6820 
6821 /*@C
6822   DMGetLabelIdIS - Get the `DMLabelGetValueIS()` from a `DMLabel` in the `DM`
6823 
6824   Not Collective
6825 
6826   Input Parameters:
6827 + dm   - The `DM` object
6828 - name - The label name
6829 
6830   Output Parameter:
6831 . ids - The integer ids, or `NULL` if the label does not exist
6832 
6833   Level: beginner
6834 
6835 .seealso: [](ch_dmbase), `DM`, `DMLabelGetValueIS()`, `DMGetLabelSize()`
6836 @*/
6837 PetscErrorCode DMGetLabelIdIS(DM dm, const char name[], IS *ids)
6838 {
6839   DMLabel label;
6840 
6841   PetscFunctionBegin;
6842   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
6843   PetscAssertPointer(name, 2);
6844   PetscAssertPointer(ids, 3);
6845   PetscCall(DMGetLabel(dm, name, &label));
6846   *ids = NULL;
6847   if (label) {
6848     PetscCall(DMLabelGetValueIS(label, ids));
6849   } else {
6850     /* returning an empty IS */
6851     PetscCall(ISCreateGeneral(PETSC_COMM_SELF, 0, NULL, PETSC_USE_POINTER, ids));
6852   }
6853   PetscFunctionReturn(PETSC_SUCCESS);
6854 }
6855 
6856 /*@C
6857   DMGetStratumSize - Get the number of points in a label stratum
6858 
6859   Not Collective
6860 
6861   Input Parameters:
6862 + dm    - The `DM` object
6863 . name  - The label name
6864 - value - The stratum value
6865 
6866   Output Parameter:
6867 . size - The number of points, also called the stratum size
6868 
6869   Level: beginner
6870 
6871 .seealso: [](ch_dmbase), `DM`, `DMLabelGetStratumSize()`, `DMGetLabelSize()`, `DMGetLabelIds()`
6872 @*/
6873 PetscErrorCode DMGetStratumSize(DM dm, const char name[], PetscInt value, PetscInt *size)
6874 {
6875   DMLabel label;
6876 
6877   PetscFunctionBegin;
6878   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
6879   PetscAssertPointer(name, 2);
6880   PetscAssertPointer(size, 4);
6881   PetscCall(DMGetLabel(dm, name, &label));
6882   *size = 0;
6883   if (!label) PetscFunctionReturn(PETSC_SUCCESS);
6884   PetscCall(DMLabelGetStratumSize(label, value, size));
6885   PetscFunctionReturn(PETSC_SUCCESS);
6886 }
6887 
6888 /*@C
6889   DMGetStratumIS - Get the points in a label stratum
6890 
6891   Not Collective
6892 
6893   Input Parameters:
6894 + dm    - The `DM` object
6895 . name  - The label name
6896 - value - The stratum value
6897 
6898   Output Parameter:
6899 . points - The stratum points, or `NULL` if the label does not exist or does not have that value
6900 
6901   Level: beginner
6902 
6903 .seealso: [](ch_dmbase), `DM`, `DMLabelGetStratumIS()`, `DMGetStratumSize()`
6904 @*/
6905 PetscErrorCode DMGetStratumIS(DM dm, const char name[], PetscInt value, IS *points)
6906 {
6907   DMLabel label;
6908 
6909   PetscFunctionBegin;
6910   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
6911   PetscAssertPointer(name, 2);
6912   PetscAssertPointer(points, 4);
6913   PetscCall(DMGetLabel(dm, name, &label));
6914   *points = NULL;
6915   if (!label) PetscFunctionReturn(PETSC_SUCCESS);
6916   PetscCall(DMLabelGetStratumIS(label, value, points));
6917   PetscFunctionReturn(PETSC_SUCCESS);
6918 }
6919 
6920 /*@C
6921   DMSetStratumIS - Set the points in a label stratum
6922 
6923   Not Collective
6924 
6925   Input Parameters:
6926 + dm     - The `DM` object
6927 . name   - The label name
6928 . value  - The stratum value
6929 - points - The stratum points
6930 
6931   Level: beginner
6932 
6933 .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMClearLabelStratum()`, `DMLabelClearStratum()`, `DMLabelSetStratumIS()`, `DMGetStratumSize()`
6934 @*/
6935 PetscErrorCode DMSetStratumIS(DM dm, const char name[], PetscInt value, IS points)
6936 {
6937   DMLabel label;
6938 
6939   PetscFunctionBegin;
6940   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
6941   PetscAssertPointer(name, 2);
6942   PetscValidHeaderSpecific(points, IS_CLASSID, 4);
6943   PetscCall(DMGetLabel(dm, name, &label));
6944   if (!label) PetscFunctionReturn(PETSC_SUCCESS);
6945   PetscCall(DMLabelSetStratumIS(label, value, points));
6946   PetscFunctionReturn(PETSC_SUCCESS);
6947 }
6948 
6949 /*@C
6950   DMClearLabelStratum - Remove all points from a stratum from a `DMLabel`
6951 
6952   Not Collective
6953 
6954   Input Parameters:
6955 + dm    - The `DM` object
6956 . name  - The label name
6957 - value - The label value for this point
6958 
6959   Output Parameter:
6960 
6961   Level: beginner
6962 
6963 .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMLabelClearStratum()`, `DMSetLabelValue()`, `DMGetStratumIS()`, `DMClearLabelValue()`
6964 @*/
6965 PetscErrorCode DMClearLabelStratum(DM dm, const char name[], PetscInt value)
6966 {
6967   DMLabel label;
6968 
6969   PetscFunctionBegin;
6970   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
6971   PetscAssertPointer(name, 2);
6972   PetscCall(DMGetLabel(dm, name, &label));
6973   if (!label) PetscFunctionReturn(PETSC_SUCCESS);
6974   PetscCall(DMLabelClearStratum(label, value));
6975   PetscFunctionReturn(PETSC_SUCCESS);
6976 }
6977 
6978 /*@
6979   DMGetNumLabels - Return the number of labels defined by on the `DM`
6980 
6981   Not Collective
6982 
6983   Input Parameter:
6984 . dm - The `DM` object
6985 
6986   Output Parameter:
6987 . numLabels - the number of Labels
6988 
6989   Level: intermediate
6990 
6991 .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMGetLabelByNum()`, `DMGetLabelName()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMGetStratumIS()`
6992 @*/
6993 PetscErrorCode DMGetNumLabels(DM dm, PetscInt *numLabels)
6994 {
6995   DMLabelLink next = dm->labels;
6996   PetscInt    n    = 0;
6997 
6998   PetscFunctionBegin;
6999   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
7000   PetscAssertPointer(numLabels, 2);
7001   while (next) {
7002     ++n;
7003     next = next->next;
7004   }
7005   *numLabels = n;
7006   PetscFunctionReturn(PETSC_SUCCESS);
7007 }
7008 
7009 /*@C
7010   DMGetLabelName - Return the name of nth label
7011 
7012   Not Collective
7013 
7014   Input Parameters:
7015 + dm - The `DM` object
7016 - n  - the label number
7017 
7018   Output Parameter:
7019 . name - the label name
7020 
7021   Level: intermediate
7022 
7023   Developer Notes:
7024   Some of the functions that appropriate on labels using their number have the suffix ByNum, others do not.
7025 
7026 .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMGetLabelByNum()`, `DMGetLabel()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMGetStratumIS()`
7027 @*/
7028 PetscErrorCode DMGetLabelName(DM dm, PetscInt n, const char **name)
7029 {
7030   DMLabelLink next = dm->labels;
7031   PetscInt    l    = 0;
7032 
7033   PetscFunctionBegin;
7034   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
7035   PetscAssertPointer(name, 3);
7036   while (next) {
7037     if (l == n) {
7038       PetscCall(PetscObjectGetName((PetscObject)next->label, name));
7039       PetscFunctionReturn(PETSC_SUCCESS);
7040     }
7041     ++l;
7042     next = next->next;
7043   }
7044   SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Label %" PetscInt_FMT " does not exist in this DM", n);
7045 }
7046 
7047 /*@C
7048   DMHasLabel - Determine whether the `DM` has a label of a given name
7049 
7050   Not Collective
7051 
7052   Input Parameters:
7053 + dm   - The `DM` object
7054 - name - The label name
7055 
7056   Output Parameter:
7057 . hasLabel - `PETSC_TRUE` if the label is present
7058 
7059   Level: intermediate
7060 
7061 .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMGetLabel()`, `DMGetLabelByNum()`, `DMCreateLabel()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMGetStratumIS()`
7062 @*/
7063 PetscErrorCode DMHasLabel(DM dm, const char name[], PetscBool *hasLabel)
7064 {
7065   DMLabelLink next = dm->labels;
7066   const char *lname;
7067 
7068   PetscFunctionBegin;
7069   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
7070   PetscAssertPointer(name, 2);
7071   PetscAssertPointer(hasLabel, 3);
7072   *hasLabel = PETSC_FALSE;
7073   while (next) {
7074     PetscCall(PetscObjectGetName((PetscObject)next->label, &lname));
7075     PetscCall(PetscStrcmp(name, lname, hasLabel));
7076     if (*hasLabel) break;
7077     next = next->next;
7078   }
7079   PetscFunctionReturn(PETSC_SUCCESS);
7080 }
7081 
7082 // PetscClangLinter pragma ignore: -fdoc-section-header-unknown
7083 /*@C
7084   DMGetLabel - Return the label of a given name, or `NULL`, from a `DM`
7085 
7086   Not Collective
7087 
7088   Input Parameters:
7089 + dm   - The `DM` object
7090 - name - The label name
7091 
7092   Output Parameter:
7093 . label - The `DMLabel`, or `NULL` if the label is absent
7094 
7095   Default labels in a `DMPLEX`:
7096 + "depth"       - Holds the depth (co-dimension) of each mesh point
7097 . "celltype"    - Holds the topological type of each cell
7098 . "ghost"       - If the DM is distributed with overlap, this marks the cells and faces in the overlap
7099 . "Cell Sets"   - Mirrors the cell sets defined by GMsh and ExodusII
7100 . "Face Sets"   - Mirrors the face sets defined by GMsh and ExodusII
7101 - "Vertex Sets" - Mirrors the vertex sets defined by GMsh
7102 
7103   Level: intermediate
7104 
7105 .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMHasLabel()`, `DMGetLabelByNum()`, `DMAddLabel()`, `DMCreateLabel()`, `DMPlexGetDepthLabel()`, `DMPlexGetCellType()`
7106 @*/
7107 PetscErrorCode DMGetLabel(DM dm, const char name[], DMLabel *label)
7108 {
7109   DMLabelLink next = dm->labels;
7110   PetscBool   hasLabel;
7111   const char *lname;
7112 
7113   PetscFunctionBegin;
7114   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
7115   PetscAssertPointer(name, 2);
7116   PetscAssertPointer(label, 3);
7117   *label = NULL;
7118   while (next) {
7119     PetscCall(PetscObjectGetName((PetscObject)next->label, &lname));
7120     PetscCall(PetscStrcmp(name, lname, &hasLabel));
7121     if (hasLabel) {
7122       *label = next->label;
7123       break;
7124     }
7125     next = next->next;
7126   }
7127   PetscFunctionReturn(PETSC_SUCCESS);
7128 }
7129 
7130 /*@C
7131   DMGetLabelByNum - Return the nth label on a `DM`
7132 
7133   Not Collective
7134 
7135   Input Parameters:
7136 + dm - The `DM` object
7137 - n  - the label number
7138 
7139   Output Parameter:
7140 . label - the label
7141 
7142   Level: intermediate
7143 
7144 .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMAddLabel()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMGetStratumIS()`
7145 @*/
7146 PetscErrorCode DMGetLabelByNum(DM dm, PetscInt n, DMLabel *label)
7147 {
7148   DMLabelLink next = dm->labels;
7149   PetscInt    l    = 0;
7150 
7151   PetscFunctionBegin;
7152   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
7153   PetscAssertPointer(label, 3);
7154   while (next) {
7155     if (l == n) {
7156       *label = next->label;
7157       PetscFunctionReturn(PETSC_SUCCESS);
7158     }
7159     ++l;
7160     next = next->next;
7161   }
7162   SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Label %" PetscInt_FMT " does not exist in this DM", n);
7163 }
7164 
7165 /*@C
7166   DMAddLabel - Add the label to this `DM`
7167 
7168   Not Collective
7169 
7170   Input Parameters:
7171 + dm    - The `DM` object
7172 - label - The `DMLabel`
7173 
7174   Level: developer
7175 
7176 .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMCreateLabel()`, `DMHasLabel()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMGetStratumIS()`
7177 @*/
7178 PetscErrorCode DMAddLabel(DM dm, DMLabel label)
7179 {
7180   DMLabelLink l, *p, tmpLabel;
7181   PetscBool   hasLabel;
7182   const char *lname;
7183   PetscBool   flg;
7184 
7185   PetscFunctionBegin;
7186   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
7187   PetscCall(PetscObjectGetName((PetscObject)label, &lname));
7188   PetscCall(DMHasLabel(dm, lname, &hasLabel));
7189   PetscCheck(!hasLabel, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Label %s already exists in this DM", lname);
7190   PetscCall(PetscCalloc1(1, &tmpLabel));
7191   tmpLabel->label  = label;
7192   tmpLabel->output = PETSC_TRUE;
7193   for (p = &dm->labels; (l = *p); p = &l->next) { }
7194   *p = tmpLabel;
7195   PetscCall(PetscObjectReference((PetscObject)label));
7196   PetscCall(PetscStrcmp(lname, "depth", &flg));
7197   if (flg) dm->depthLabel = label;
7198   PetscCall(PetscStrcmp(lname, "celltype", &flg));
7199   if (flg) dm->celltypeLabel = label;
7200   PetscFunctionReturn(PETSC_SUCCESS);
7201 }
7202 
7203 // PetscClangLinter pragma ignore: -fdoc-section-header-unknown
7204 /*@C
7205   DMSetLabel - Replaces the label of a given name, or ignores it if the name is not present
7206 
7207   Not Collective
7208 
7209   Input Parameters:
7210 + dm    - The `DM` object
7211 - label - The `DMLabel`, having the same name, to substitute
7212 
7213   Default labels in a `DMPLEX`:
7214 + "depth"       - Holds the depth (co-dimension) of each mesh point
7215 . "celltype"    - Holds the topological type of each cell
7216 . "ghost"       - If the DM is distributed with overlap, this marks the cells and faces in the overlap
7217 . "Cell Sets"   - Mirrors the cell sets defined by GMsh and ExodusII
7218 . "Face Sets"   - Mirrors the face sets defined by GMsh and ExodusII
7219 - "Vertex Sets" - Mirrors the vertex sets defined by GMsh
7220 
7221   Level: intermediate
7222 
7223 .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMCreateLabel()`, `DMHasLabel()`, `DMPlexGetDepthLabel()`, `DMPlexGetCellType()`
7224 @*/
7225 PetscErrorCode DMSetLabel(DM dm, DMLabel label)
7226 {
7227   DMLabelLink next = dm->labels;
7228   PetscBool   hasLabel, flg;
7229   const char *name, *lname;
7230 
7231   PetscFunctionBegin;
7232   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
7233   PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 2);
7234   PetscCall(PetscObjectGetName((PetscObject)label, &name));
7235   while (next) {
7236     PetscCall(PetscObjectGetName((PetscObject)next->label, &lname));
7237     PetscCall(PetscStrcmp(name, lname, &hasLabel));
7238     if (hasLabel) {
7239       PetscCall(PetscObjectReference((PetscObject)label));
7240       PetscCall(PetscStrcmp(lname, "depth", &flg));
7241       if (flg) dm->depthLabel = label;
7242       PetscCall(PetscStrcmp(lname, "celltype", &flg));
7243       if (flg) dm->celltypeLabel = label;
7244       PetscCall(DMLabelDestroy(&next->label));
7245       next->label = label;
7246       break;
7247     }
7248     next = next->next;
7249   }
7250   PetscFunctionReturn(PETSC_SUCCESS);
7251 }
7252 
7253 /*@C
7254   DMRemoveLabel - Remove the label given by name from this `DM`
7255 
7256   Not Collective
7257 
7258   Input Parameters:
7259 + dm   - The `DM` object
7260 - name - The label name
7261 
7262   Output Parameter:
7263 . label - The `DMLabel`, or `NULL` if the label is absent. Pass in `NULL` to call `DMLabelDestroy()` on the label, otherwise the
7264           caller is responsible for calling `DMLabelDestroy()`.
7265 
7266   Level: developer
7267 
7268 .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMCreateLabel()`, `DMHasLabel()`, `DMGetLabel()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMLabelDestroy()`, `DMRemoveLabelBySelf()`
7269 @*/
7270 PetscErrorCode DMRemoveLabel(DM dm, const char name[], DMLabel *label)
7271 {
7272   DMLabelLink link, *pnext;
7273   PetscBool   hasLabel;
7274   const char *lname;
7275 
7276   PetscFunctionBegin;
7277   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
7278   PetscAssertPointer(name, 2);
7279   if (label) {
7280     PetscAssertPointer(label, 3);
7281     *label = NULL;
7282   }
7283   for (pnext = &dm->labels; (link = *pnext); pnext = &link->next) {
7284     PetscCall(PetscObjectGetName((PetscObject)link->label, &lname));
7285     PetscCall(PetscStrcmp(name, lname, &hasLabel));
7286     if (hasLabel) {
7287       *pnext = link->next; /* Remove from list */
7288       PetscCall(PetscStrcmp(name, "depth", &hasLabel));
7289       if (hasLabel) dm->depthLabel = NULL;
7290       PetscCall(PetscStrcmp(name, "celltype", &hasLabel));
7291       if (hasLabel) dm->celltypeLabel = NULL;
7292       if (label) *label = link->label;
7293       else PetscCall(DMLabelDestroy(&link->label));
7294       PetscCall(PetscFree(link));
7295       break;
7296     }
7297   }
7298   PetscFunctionReturn(PETSC_SUCCESS);
7299 }
7300 
7301 /*@
7302   DMRemoveLabelBySelf - Remove the label from this `DM`
7303 
7304   Not Collective
7305 
7306   Input Parameters:
7307 + dm           - The `DM` object
7308 . label        - The `DMLabel` to be removed from the `DM`
7309 - failNotFound - Should it fail if the label is not found in the `DM`?
7310 
7311   Level: developer
7312 
7313   Note:
7314   Only exactly the same instance is removed if found, name match is ignored.
7315   If the `DM` has an exclusive reference to the label, the label gets destroyed and
7316   *label nullified.
7317 
7318 .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMCreateLabel()`, `DMHasLabel()`, `DMGetLabel()` `DMGetLabelValue()`, `DMSetLabelValue()`, `DMLabelDestroy()`, `DMRemoveLabel()`
7319 @*/
7320 PetscErrorCode DMRemoveLabelBySelf(DM dm, DMLabel *label, PetscBool failNotFound)
7321 {
7322   DMLabelLink link, *pnext;
7323   PetscBool   hasLabel = PETSC_FALSE;
7324 
7325   PetscFunctionBegin;
7326   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
7327   PetscAssertPointer(label, 2);
7328   if (!*label && !failNotFound) PetscFunctionReturn(PETSC_SUCCESS);
7329   PetscValidHeaderSpecific(*label, DMLABEL_CLASSID, 2);
7330   PetscValidLogicalCollectiveBool(dm, failNotFound, 3);
7331   for (pnext = &dm->labels; (link = *pnext); pnext = &link->next) {
7332     if (*label == link->label) {
7333       hasLabel = PETSC_TRUE;
7334       *pnext   = link->next; /* Remove from list */
7335       if (*label == dm->depthLabel) dm->depthLabel = NULL;
7336       if (*label == dm->celltypeLabel) dm->celltypeLabel = NULL;
7337       if (((PetscObject)link->label)->refct < 2) *label = NULL; /* nullify if exclusive reference */
7338       PetscCall(DMLabelDestroy(&link->label));
7339       PetscCall(PetscFree(link));
7340       break;
7341     }
7342   }
7343   PetscCheck(hasLabel || !failNotFound, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Given label not found in DM");
7344   PetscFunctionReturn(PETSC_SUCCESS);
7345 }
7346 
7347 /*@C
7348   DMGetLabelOutput - Get the output flag for a given label
7349 
7350   Not Collective
7351 
7352   Input Parameters:
7353 + dm   - The `DM` object
7354 - name - The label name
7355 
7356   Output Parameter:
7357 . output - The flag for output
7358 
7359   Level: developer
7360 
7361 .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMSetLabelOutput()`, `DMCreateLabel()`, `DMHasLabel()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMGetStratumIS()`
7362 @*/
7363 PetscErrorCode DMGetLabelOutput(DM dm, const char name[], PetscBool *output)
7364 {
7365   DMLabelLink next = dm->labels;
7366   const char *lname;
7367 
7368   PetscFunctionBegin;
7369   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
7370   PetscAssertPointer(name, 2);
7371   PetscAssertPointer(output, 3);
7372   while (next) {
7373     PetscBool flg;
7374 
7375     PetscCall(PetscObjectGetName((PetscObject)next->label, &lname));
7376     PetscCall(PetscStrcmp(name, lname, &flg));
7377     if (flg) {
7378       *output = next->output;
7379       PetscFunctionReturn(PETSC_SUCCESS);
7380     }
7381     next = next->next;
7382   }
7383   SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "No label named %s was present in this dm", name);
7384 }
7385 
7386 /*@C
7387   DMSetLabelOutput - Set if a given label should be saved to a `PetscViewer` in calls to `DMView()`
7388 
7389   Not Collective
7390 
7391   Input Parameters:
7392 + dm     - The `DM` object
7393 . name   - The label name
7394 - output - `PETSC_TRUE` to save the label to the viewer
7395 
7396   Level: developer
7397 
7398 .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMGetOutputFlag()`, `DMGetLabelOutput()`, `DMCreateLabel()`, `DMHasLabel()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMGetStratumIS()`
7399 @*/
7400 PetscErrorCode DMSetLabelOutput(DM dm, const char name[], PetscBool output)
7401 {
7402   DMLabelLink next = dm->labels;
7403   const char *lname;
7404 
7405   PetscFunctionBegin;
7406   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
7407   PetscAssertPointer(name, 2);
7408   while (next) {
7409     PetscBool flg;
7410 
7411     PetscCall(PetscObjectGetName((PetscObject)next->label, &lname));
7412     PetscCall(PetscStrcmp(name, lname, &flg));
7413     if (flg) {
7414       next->output = output;
7415       PetscFunctionReturn(PETSC_SUCCESS);
7416     }
7417     next = next->next;
7418   }
7419   SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "No label named %s was present in this dm", name);
7420 }
7421 
7422 /*@
7423   DMCopyLabels - Copy labels from one `DM` mesh to another `DM` with a superset of the points
7424 
7425   Collective
7426 
7427   Input Parameters:
7428 + dmA   - The `DM` object with initial labels
7429 . dmB   - The `DM` object to which labels are copied
7430 . mode  - Copy labels by pointers (`PETSC_OWN_POINTER`) or duplicate them (`PETSC_COPY_VALUES`)
7431 . all   - Copy all labels including "depth", "dim", and "celltype" (`PETSC_TRUE`) which are otherwise ignored (`PETSC_FALSE`)
7432 - emode - How to behave when a `DMLabel` in the source and destination `DM`s with the same name is encountered (see `DMCopyLabelsMode`)
7433 
7434   Level: intermediate
7435 
7436   Note:
7437   This is typically used when interpolating or otherwise adding to a mesh, or testing.
7438 
7439 .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMAddLabel()`, `DMCopyLabelsMode`
7440 @*/
7441 PetscErrorCode DMCopyLabels(DM dmA, DM dmB, PetscCopyMode mode, PetscBool all, DMCopyLabelsMode emode)
7442 {
7443   DMLabel     label, labelNew, labelOld;
7444   const char *name;
7445   PetscBool   flg;
7446   DMLabelLink link;
7447 
7448   PetscFunctionBegin;
7449   PetscValidHeaderSpecific(dmA, DM_CLASSID, 1);
7450   PetscValidHeaderSpecific(dmB, DM_CLASSID, 2);
7451   PetscValidLogicalCollectiveEnum(dmA, mode, 3);
7452   PetscValidLogicalCollectiveBool(dmA, all, 4);
7453   PetscCheck(mode != PETSC_USE_POINTER, PetscObjectComm((PetscObject)dmA), PETSC_ERR_SUP, "PETSC_USE_POINTER not supported for objects");
7454   if (dmA == dmB) PetscFunctionReturn(PETSC_SUCCESS);
7455   for (link = dmA->labels; link; link = link->next) {
7456     label = link->label;
7457     PetscCall(PetscObjectGetName((PetscObject)label, &name));
7458     if (!all) {
7459       PetscCall(PetscStrcmp(name, "depth", &flg));
7460       if (flg) continue;
7461       PetscCall(PetscStrcmp(name, "dim", &flg));
7462       if (flg) continue;
7463       PetscCall(PetscStrcmp(name, "celltype", &flg));
7464       if (flg) continue;
7465     }
7466     PetscCall(DMGetLabel(dmB, name, &labelOld));
7467     if (labelOld) {
7468       switch (emode) {
7469       case DM_COPY_LABELS_KEEP:
7470         continue;
7471       case DM_COPY_LABELS_REPLACE:
7472         PetscCall(DMRemoveLabelBySelf(dmB, &labelOld, PETSC_TRUE));
7473         break;
7474       case DM_COPY_LABELS_FAIL:
7475         SETERRQ(PetscObjectComm((PetscObject)dmA), PETSC_ERR_ARG_OUTOFRANGE, "Label %s already exists in destination DM", name);
7476       default:
7477         SETERRQ(PetscObjectComm((PetscObject)dmA), PETSC_ERR_ARG_OUTOFRANGE, "Unhandled DMCopyLabelsMode %d", (int)emode);
7478       }
7479     }
7480     if (mode == PETSC_COPY_VALUES) {
7481       PetscCall(DMLabelDuplicate(label, &labelNew));
7482     } else {
7483       labelNew = label;
7484     }
7485     PetscCall(DMAddLabel(dmB, labelNew));
7486     if (mode == PETSC_COPY_VALUES) PetscCall(DMLabelDestroy(&labelNew));
7487   }
7488   PetscFunctionReturn(PETSC_SUCCESS);
7489 }
7490 
7491 /*@C
7492   DMCompareLabels - Compare labels between two `DM` objects
7493 
7494   Collective; No Fortran Support
7495 
7496   Input Parameters:
7497 + dm0 - First `DM` object
7498 - dm1 - Second `DM` object
7499 
7500   Output Parameters:
7501 + equal   - (Optional) Flag whether labels of dm0 and dm1 are the same
7502 - message - (Optional) Message describing the difference, or `NULL` if there is no difference
7503 
7504   Level: intermediate
7505 
7506   Notes:
7507   The output flag equal will be the same on all processes.
7508 
7509   If equal is passed as `NULL` and difference is found, an error is thrown on all processes.
7510 
7511   Make sure to pass equal is `NULL` on all processes or none of them.
7512 
7513   The output message is set independently on each rank.
7514 
7515   message must be freed with `PetscFree()`
7516 
7517   If message is passed as `NULL` and a difference is found, the difference description is printed to stderr in synchronized manner.
7518 
7519   Make sure to pass message as `NULL` on all processes or no processes.
7520 
7521   Labels are matched by name. If the number of labels and their names are equal,
7522   `DMLabelCompare()` is used to compare each pair of labels with the same name.
7523 
7524 .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMAddLabel()`, `DMCopyLabelsMode`, `DMLabelCompare()`
7525 @*/
7526 PetscErrorCode DMCompareLabels(DM dm0, DM dm1, PetscBool *equal, char **message)
7527 {
7528   PetscInt    n, i;
7529   char        msg[PETSC_MAX_PATH_LEN] = "";
7530   PetscBool   eq;
7531   MPI_Comm    comm;
7532   PetscMPIInt rank;
7533 
7534   PetscFunctionBegin;
7535   PetscValidHeaderSpecific(dm0, DM_CLASSID, 1);
7536   PetscValidHeaderSpecific(dm1, DM_CLASSID, 2);
7537   PetscCheckSameComm(dm0, 1, dm1, 2);
7538   if (equal) PetscAssertPointer(equal, 3);
7539   if (message) PetscAssertPointer(message, 4);
7540   PetscCall(PetscObjectGetComm((PetscObject)dm0, &comm));
7541   PetscCallMPI(MPI_Comm_rank(comm, &rank));
7542   {
7543     PetscInt n1;
7544 
7545     PetscCall(DMGetNumLabels(dm0, &n));
7546     PetscCall(DMGetNumLabels(dm1, &n1));
7547     eq = (PetscBool)(n == n1);
7548     if (!eq) PetscCall(PetscSNPrintf(msg, sizeof(msg), "Number of labels in dm0 = %" PetscInt_FMT " != %" PetscInt_FMT " = Number of labels in dm1", n, n1));
7549     PetscCall(MPIU_Allreduce(MPI_IN_PLACE, &eq, 1, MPIU_BOOL, MPI_LAND, comm));
7550     if (!eq) goto finish;
7551   }
7552   for (i = 0; i < n; i++) {
7553     DMLabel     l0, l1;
7554     const char *name;
7555     char       *msgInner;
7556 
7557     /* Ignore label order */
7558     PetscCall(DMGetLabelByNum(dm0, i, &l0));
7559     PetscCall(PetscObjectGetName((PetscObject)l0, &name));
7560     PetscCall(DMGetLabel(dm1, name, &l1));
7561     if (!l1) {
7562       PetscCall(PetscSNPrintf(msg, sizeof(msg), "Label \"%s\" (#%" PetscInt_FMT " in dm0) not found in dm1", name, i));
7563       eq = PETSC_FALSE;
7564       break;
7565     }
7566     PetscCall(DMLabelCompare(comm, l0, l1, &eq, &msgInner));
7567     PetscCall(PetscStrncpy(msg, msgInner, sizeof(msg)));
7568     PetscCall(PetscFree(msgInner));
7569     if (!eq) break;
7570   }
7571   PetscCall(MPIU_Allreduce(MPI_IN_PLACE, &eq, 1, MPIU_BOOL, MPI_LAND, comm));
7572 finish:
7573   /* If message output arg not set, print to stderr */
7574   if (message) {
7575     *message = NULL;
7576     if (msg[0]) PetscCall(PetscStrallocpy(msg, message));
7577   } else {
7578     if (msg[0]) PetscCall(PetscSynchronizedFPrintf(comm, PETSC_STDERR, "[%d] %s\n", rank, msg));
7579     PetscCall(PetscSynchronizedFlush(comm, PETSC_STDERR));
7580   }
7581   /* If same output arg not ser and labels are not equal, throw error */
7582   if (equal) *equal = eq;
7583   else PetscCheck(eq, comm, PETSC_ERR_ARG_INCOMP, "DMLabels are not the same in dm0 and dm1");
7584   PetscFunctionReturn(PETSC_SUCCESS);
7585 }
7586 
7587 PetscErrorCode DMSetLabelValue_Fast(DM dm, DMLabel *label, const char name[], PetscInt point, PetscInt value)
7588 {
7589   PetscFunctionBegin;
7590   PetscAssertPointer(label, 2);
7591   if (!*label) {
7592     PetscCall(DMCreateLabel(dm, name));
7593     PetscCall(DMGetLabel(dm, name, label));
7594   }
7595   PetscCall(DMLabelSetValue(*label, point, value));
7596   PetscFunctionReturn(PETSC_SUCCESS);
7597 }
7598 
7599 /*
7600   Many mesh programs, such as Triangle and TetGen, allow only a single label for each mesh point. Therefore, we would
7601   like to encode all label IDs using a single, universal label. We can do this by assigning an integer to every
7602   (label, id) pair in the DM.
7603 
7604   However, a mesh point can have multiple labels, so we must separate all these values. We will assign a bit range to
7605   each label.
7606 */
7607 PetscErrorCode DMUniversalLabelCreate(DM dm, DMUniversalLabel *universal)
7608 {
7609   DMUniversalLabel ul;
7610   PetscBool       *active;
7611   PetscInt         pStart, pEnd, p, Nl, l, m;
7612 
7613   PetscFunctionBegin;
7614   PetscCall(PetscMalloc1(1, &ul));
7615   PetscCall(DMLabelCreate(PETSC_COMM_SELF, "universal", &ul->label));
7616   PetscCall(DMGetNumLabels(dm, &Nl));
7617   PetscCall(PetscCalloc1(Nl, &active));
7618   ul->Nl = 0;
7619   for (l = 0; l < Nl; ++l) {
7620     PetscBool   isdepth, iscelltype;
7621     const char *name;
7622 
7623     PetscCall(DMGetLabelName(dm, l, &name));
7624     PetscCall(PetscStrncmp(name, "depth", 6, &isdepth));
7625     PetscCall(PetscStrncmp(name, "celltype", 9, &iscelltype));
7626     active[l] = !(isdepth || iscelltype) ? PETSC_TRUE : PETSC_FALSE;
7627     if (active[l]) ++ul->Nl;
7628   }
7629   PetscCall(PetscCalloc5(ul->Nl, &ul->names, ul->Nl, &ul->indices, ul->Nl + 1, &ul->offsets, ul->Nl + 1, &ul->bits, ul->Nl, &ul->masks));
7630   ul->Nv = 0;
7631   for (l = 0, m = 0; l < Nl; ++l) {
7632     DMLabel     label;
7633     PetscInt    nv;
7634     const char *name;
7635 
7636     if (!active[l]) continue;
7637     PetscCall(DMGetLabelName(dm, l, &name));
7638     PetscCall(DMGetLabelByNum(dm, l, &label));
7639     PetscCall(DMLabelGetNumValues(label, &nv));
7640     PetscCall(PetscStrallocpy(name, &ul->names[m]));
7641     ul->indices[m] = l;
7642     ul->Nv += nv;
7643     ul->offsets[m + 1] = nv;
7644     ul->bits[m + 1]    = PetscCeilReal(PetscLog2Real(nv + 1));
7645     ++m;
7646   }
7647   for (l = 1; l <= ul->Nl; ++l) {
7648     ul->offsets[l] = ul->offsets[l - 1] + ul->offsets[l];
7649     ul->bits[l]    = ul->bits[l - 1] + ul->bits[l];
7650   }
7651   for (l = 0; l < ul->Nl; ++l) {
7652     PetscInt b;
7653 
7654     ul->masks[l] = 0;
7655     for (b = ul->bits[l]; b < ul->bits[l + 1]; ++b) ul->masks[l] |= 1 << b;
7656   }
7657   PetscCall(PetscMalloc1(ul->Nv, &ul->values));
7658   for (l = 0, m = 0; l < Nl; ++l) {
7659     DMLabel         label;
7660     IS              valueIS;
7661     const PetscInt *varr;
7662     PetscInt        nv, v;
7663 
7664     if (!active[l]) continue;
7665     PetscCall(DMGetLabelByNum(dm, l, &label));
7666     PetscCall(DMLabelGetNumValues(label, &nv));
7667     PetscCall(DMLabelGetValueIS(label, &valueIS));
7668     PetscCall(ISGetIndices(valueIS, &varr));
7669     for (v = 0; v < nv; ++v) ul->values[ul->offsets[m] + v] = varr[v];
7670     PetscCall(ISRestoreIndices(valueIS, &varr));
7671     PetscCall(ISDestroy(&valueIS));
7672     PetscCall(PetscSortInt(nv, &ul->values[ul->offsets[m]]));
7673     ++m;
7674   }
7675   PetscCall(DMPlexGetChart(dm, &pStart, &pEnd));
7676   for (p = pStart; p < pEnd; ++p) {
7677     PetscInt  uval   = 0;
7678     PetscBool marked = PETSC_FALSE;
7679 
7680     for (l = 0, m = 0; l < Nl; ++l) {
7681       DMLabel  label;
7682       PetscInt val, defval, loc, nv;
7683 
7684       if (!active[l]) continue;
7685       PetscCall(DMGetLabelByNum(dm, l, &label));
7686       PetscCall(DMLabelGetValue(label, p, &val));
7687       PetscCall(DMLabelGetDefaultValue(label, &defval));
7688       if (val == defval) {
7689         ++m;
7690         continue;
7691       }
7692       nv     = ul->offsets[m + 1] - ul->offsets[m];
7693       marked = PETSC_TRUE;
7694       PetscCall(PetscFindInt(val, nv, &ul->values[ul->offsets[m]], &loc));
7695       PetscCheck(loc >= 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Label value %" PetscInt_FMT " not found in compression array", val);
7696       uval += (loc + 1) << ul->bits[m];
7697       ++m;
7698     }
7699     if (marked) PetscCall(DMLabelSetValue(ul->label, p, uval));
7700   }
7701   PetscCall(PetscFree(active));
7702   *universal = ul;
7703   PetscFunctionReturn(PETSC_SUCCESS);
7704 }
7705 
7706 PetscErrorCode DMUniversalLabelDestroy(DMUniversalLabel *universal)
7707 {
7708   PetscInt l;
7709 
7710   PetscFunctionBegin;
7711   for (l = 0; l < (*universal)->Nl; ++l) PetscCall(PetscFree((*universal)->names[l]));
7712   PetscCall(DMLabelDestroy(&(*universal)->label));
7713   PetscCall(PetscFree5((*universal)->names, (*universal)->indices, (*universal)->offsets, (*universal)->bits, (*universal)->masks));
7714   PetscCall(PetscFree((*universal)->values));
7715   PetscCall(PetscFree(*universal));
7716   *universal = NULL;
7717   PetscFunctionReturn(PETSC_SUCCESS);
7718 }
7719 
7720 PetscErrorCode DMUniversalLabelGetLabel(DMUniversalLabel ul, DMLabel *ulabel)
7721 {
7722   PetscFunctionBegin;
7723   PetscAssertPointer(ulabel, 2);
7724   *ulabel = ul->label;
7725   PetscFunctionReturn(PETSC_SUCCESS);
7726 }
7727 
7728 PetscErrorCode DMUniversalLabelCreateLabels(DMUniversalLabel ul, PetscBool preserveOrder, DM dm)
7729 {
7730   PetscInt Nl = ul->Nl, l;
7731 
7732   PetscFunctionBegin;
7733   PetscValidHeaderSpecific(dm, DM_CLASSID, 3);
7734   for (l = 0; l < Nl; ++l) {
7735     if (preserveOrder) PetscCall(DMCreateLabelAtIndex(dm, ul->indices[l], ul->names[l]));
7736     else PetscCall(DMCreateLabel(dm, ul->names[l]));
7737   }
7738   if (preserveOrder) {
7739     for (l = 0; l < ul->Nl; ++l) {
7740       const char *name;
7741       PetscBool   match;
7742 
7743       PetscCall(DMGetLabelName(dm, ul->indices[l], &name));
7744       PetscCall(PetscStrcmp(name, ul->names[l], &match));
7745       PetscCheck(match, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Label %" PetscInt_FMT " name %s does not match new name %s", l, name, ul->names[l]);
7746     }
7747   }
7748   PetscFunctionReturn(PETSC_SUCCESS);
7749 }
7750 
7751 PetscErrorCode DMUniversalLabelSetLabelValue(DMUniversalLabel ul, DM dm, PetscBool useIndex, PetscInt p, PetscInt value)
7752 {
7753   PetscInt l;
7754 
7755   PetscFunctionBegin;
7756   for (l = 0; l < ul->Nl; ++l) {
7757     DMLabel  label;
7758     PetscInt lval = (value & ul->masks[l]) >> ul->bits[l];
7759 
7760     if (lval) {
7761       if (useIndex) PetscCall(DMGetLabelByNum(dm, ul->indices[l], &label));
7762       else PetscCall(DMGetLabel(dm, ul->names[l], &label));
7763       PetscCall(DMLabelSetValue(label, p, ul->values[ul->offsets[l] + lval - 1]));
7764     }
7765   }
7766   PetscFunctionReturn(PETSC_SUCCESS);
7767 }
7768 
7769 /*@
7770   DMGetCoarseDM - Get the coarse `DM`from which this `DM` was obtained by refinement
7771 
7772   Not Collective
7773 
7774   Input Parameter:
7775 . dm - The `DM` object
7776 
7777   Output Parameter:
7778 . cdm - The coarse `DM`
7779 
7780   Level: intermediate
7781 
7782 .seealso: [](ch_dmbase), `DM`, `DMSetCoarseDM()`, `DMCoarsen()`
7783 @*/
7784 PetscErrorCode DMGetCoarseDM(DM dm, DM *cdm)
7785 {
7786   PetscFunctionBegin;
7787   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
7788   PetscAssertPointer(cdm, 2);
7789   *cdm = dm->coarseMesh;
7790   PetscFunctionReturn(PETSC_SUCCESS);
7791 }
7792 
7793 /*@
7794   DMSetCoarseDM - Set the coarse `DM` from which this `DM` was obtained by refinement
7795 
7796   Input Parameters:
7797 + dm  - The `DM` object
7798 - cdm - The coarse `DM`
7799 
7800   Level: intermediate
7801 
7802   Note:
7803   Normally this is set automatically by `DMRefine()`
7804 
7805 .seealso: [](ch_dmbase), `DM`, `DMGetCoarseDM()`, `DMCoarsen()`, `DMSetRefine()`, `DMSetFineDM()`
7806 @*/
7807 PetscErrorCode DMSetCoarseDM(DM dm, DM cdm)
7808 {
7809   PetscFunctionBegin;
7810   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
7811   if (cdm) PetscValidHeaderSpecific(cdm, DM_CLASSID, 2);
7812   if (dm == cdm) cdm = NULL;
7813   PetscCall(PetscObjectReference((PetscObject)cdm));
7814   PetscCall(DMDestroy(&dm->coarseMesh));
7815   dm->coarseMesh = cdm;
7816   PetscFunctionReturn(PETSC_SUCCESS);
7817 }
7818 
7819 /*@
7820   DMGetFineDM - Get the fine mesh from which this `DM` was obtained by coarsening
7821 
7822   Input Parameter:
7823 . dm - The `DM` object
7824 
7825   Output Parameter:
7826 . fdm - The fine `DM`
7827 
7828   Level: intermediate
7829 
7830 .seealso: [](ch_dmbase), `DM`, `DMSetFineDM()`, `DMCoarsen()`, `DMRefine()`
7831 @*/
7832 PetscErrorCode DMGetFineDM(DM dm, DM *fdm)
7833 {
7834   PetscFunctionBegin;
7835   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
7836   PetscAssertPointer(fdm, 2);
7837   *fdm = dm->fineMesh;
7838   PetscFunctionReturn(PETSC_SUCCESS);
7839 }
7840 
7841 /*@
7842   DMSetFineDM - Set the fine mesh from which this was obtained by coarsening
7843 
7844   Input Parameters:
7845 + dm  - The `DM` object
7846 - fdm - The fine `DM`
7847 
7848   Level: developer
7849 
7850   Note:
7851   Normally this is set automatically by `DMCoarsen()`
7852 
7853 .seealso: [](ch_dmbase), `DM`, `DMGetFineDM()`, `DMCoarsen()`, `DMRefine()`
7854 @*/
7855 PetscErrorCode DMSetFineDM(DM dm, DM fdm)
7856 {
7857   PetscFunctionBegin;
7858   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
7859   if (fdm) PetscValidHeaderSpecific(fdm, DM_CLASSID, 2);
7860   if (dm == fdm) fdm = NULL;
7861   PetscCall(PetscObjectReference((PetscObject)fdm));
7862   PetscCall(DMDestroy(&dm->fineMesh));
7863   dm->fineMesh = fdm;
7864   PetscFunctionReturn(PETSC_SUCCESS);
7865 }
7866 
7867 /*@C
7868   DMAddBoundary - Add a boundary condition to a model represented by a `DM`
7869 
7870   Collective
7871 
7872   Input Parameters:
7873 + dm       - The `DM`, with a `PetscDS` that matches the problem being constrained
7874 . type     - The type of condition, e.g. `DM_BC_ESSENTIAL_ANALYTIC`, `DM_BC_ESSENTIAL_FIELD` (Dirichlet), or `DM_BC_NATURAL` (Neumann)
7875 . name     - The BC name
7876 . label    - The label defining constrained points
7877 . Nv       - The number of `DMLabel` values for constrained points
7878 . values   - An array of values for constrained points
7879 . field    - The field to constrain
7880 . Nc       - The number of constrained field components (0 will constrain all fields)
7881 . comps    - An array of constrained component numbers
7882 . bcFunc   - A pointwise function giving boundary values
7883 . bcFunc_t - A pointwise function giving the time deriative of the boundary values, or NULL
7884 - ctx      - An optional user context for bcFunc
7885 
7886   Output Parameter:
7887 . bd - (Optional) Boundary number
7888 
7889   Options Database Keys:
7890 + -bc_<boundary name> <num>      - Overrides the boundary ids
7891 - -bc_<boundary name>_comp <num> - Overrides the boundary components
7892 
7893   Level: intermediate
7894 
7895   Notes:
7896   Both bcFunc abd bcFunc_t will depend on the boundary condition type. If the type if `DM_BC_ESSENTIAL`, then the calling sequence is\:
7897 
7898 $ void bcFunc(PetscInt dim, PetscReal time, const PetscReal x[], PetscInt Nc, PetscScalar bcval[])
7899 
7900   If the type is `DM_BC_ESSENTIAL_FIELD` or other _FIELD value, then the calling sequence is\:
7901 
7902 .vb
7903   void bcFunc(PetscInt dim, PetscInt Nf, PetscInt NfAux,
7904               const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[],
7905               const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[],
7906               PetscReal time, const PetscReal x[], PetscScalar bcval[])
7907 .ve
7908 + dim - the spatial dimension
7909 . Nf - the number of fields
7910 . uOff - the offset into u[] and u_t[] for each field
7911 . uOff_x - the offset into u_x[] for each field
7912 . u - each field evaluated at the current point
7913 . u_t - the time derivative of each field evaluated at the current point
7914 . u_x - the gradient of each field evaluated at the current point
7915 . aOff - the offset into a[] and a_t[] for each auxiliary field
7916 . aOff_x - the offset into a_x[] for each auxiliary field
7917 . a - each auxiliary field evaluated at the current point
7918 . a_t - the time derivative of each auxiliary field evaluated at the current point
7919 . a_x - the gradient of auxiliary each field evaluated at the current point
7920 . t - current time
7921 . x - coordinates of the current point
7922 . numConstants - number of constant parameters
7923 . constants - constant parameters
7924 - bcval - output values at the current point
7925 
7926 .seealso: [](ch_dmbase), `DM`, `DSGetBoundary()`, `PetscDSAddBoundary()`
7927 @*/
7928 PetscErrorCode DMAddBoundary(DM dm, DMBoundaryConditionType type, const char name[], DMLabel label, PetscInt Nv, const PetscInt values[], PetscInt field, PetscInt Nc, const PetscInt comps[], void (*bcFunc)(void), void (*bcFunc_t)(void), void *ctx, PetscInt *bd)
7929 {
7930   PetscDS ds;
7931 
7932   PetscFunctionBegin;
7933   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
7934   PetscValidLogicalCollectiveEnum(dm, type, 2);
7935   PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 4);
7936   PetscValidLogicalCollectiveInt(dm, Nv, 5);
7937   PetscValidLogicalCollectiveInt(dm, field, 7);
7938   PetscValidLogicalCollectiveInt(dm, Nc, 8);
7939   PetscCheck(!dm->localSection, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONGSTATE, "Cannot add boundary to DM after creating local section");
7940   PetscCall(DMGetDS(dm, &ds));
7941   /* Complete label */
7942   if (label) {
7943     PetscObject  obj;
7944     PetscClassId id;
7945 
7946     PetscCall(DMGetField(dm, field, NULL, &obj));
7947     PetscCall(PetscObjectGetClassId(obj, &id));
7948     if (id == PETSCFE_CLASSID) {
7949       DM plex;
7950 
7951       PetscCall(DMConvert(dm, DMPLEX, &plex));
7952       if (plex) PetscCall(DMPlexLabelComplete(plex, label));
7953       PetscCall(DMDestroy(&plex));
7954     }
7955   }
7956   PetscCall(PetscDSAddBoundary(ds, type, name, label, Nv, values, field, Nc, comps, bcFunc, bcFunc_t, ctx, bd));
7957   PetscFunctionReturn(PETSC_SUCCESS);
7958 }
7959 
7960 /* TODO Remove this since now the structures are the same */
7961 static PetscErrorCode DMPopulateBoundary(DM dm)
7962 {
7963   PetscDS     ds;
7964   DMBoundary *lastnext;
7965   DSBoundary  dsbound;
7966 
7967   PetscFunctionBegin;
7968   PetscCall(DMGetDS(dm, &ds));
7969   dsbound = ds->boundary;
7970   if (dm->boundary) {
7971     DMBoundary next = dm->boundary;
7972 
7973     /* quick check to see if the PetscDS has changed */
7974     if (next->dsboundary == dsbound) PetscFunctionReturn(PETSC_SUCCESS);
7975     /* the PetscDS has changed: tear down and rebuild */
7976     while (next) {
7977       DMBoundary b = next;
7978 
7979       next = b->next;
7980       PetscCall(PetscFree(b));
7981     }
7982     dm->boundary = NULL;
7983   }
7984 
7985   lastnext = &dm->boundary;
7986   while (dsbound) {
7987     DMBoundary dmbound;
7988 
7989     PetscCall(PetscNew(&dmbound));
7990     dmbound->dsboundary = dsbound;
7991     dmbound->label      = dsbound->label;
7992     /* push on the back instead of the front so that it is in the same order as in the PetscDS */
7993     *lastnext = dmbound;
7994     lastnext  = &dmbound->next;
7995     dsbound   = dsbound->next;
7996   }
7997   PetscFunctionReturn(PETSC_SUCCESS);
7998 }
7999 
8000 /* TODO: missing manual page */
8001 PetscErrorCode DMIsBoundaryPoint(DM dm, PetscInt point, PetscBool *isBd)
8002 {
8003   DMBoundary b;
8004 
8005   PetscFunctionBegin;
8006   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
8007   PetscAssertPointer(isBd, 3);
8008   *isBd = PETSC_FALSE;
8009   PetscCall(DMPopulateBoundary(dm));
8010   b = dm->boundary;
8011   while (b && !(*isBd)) {
8012     DMLabel    label = b->label;
8013     DSBoundary dsb   = b->dsboundary;
8014     PetscInt   i;
8015 
8016     if (label) {
8017       for (i = 0; i < dsb->Nv && !(*isBd); ++i) PetscCall(DMLabelStratumHasPoint(label, dsb->values[i], point, isBd));
8018     }
8019     b = b->next;
8020   }
8021   PetscFunctionReturn(PETSC_SUCCESS);
8022 }
8023 
8024 /*@C
8025   DMProjectFunction - This projects the given function into the function space provided by a `DM`, putting the coefficients in a global vector.
8026 
8027   Collective
8028 
8029   Input Parameters:
8030 + dm    - The `DM`
8031 . time  - The time
8032 . funcs - The coordinate functions to evaluate, one per field
8033 . ctxs  - Optional array of contexts to pass to each coordinate function.  ctxs itself may be null.
8034 - mode  - The insertion mode for values
8035 
8036   Output Parameter:
8037 . X - vector
8038 
8039   Calling sequence of `funcs`:
8040 + dim  - The spatial dimension
8041 . time - The time at which to sample
8042 . x    - The coordinates
8043 . Nc   - The number of components
8044 . u    - The output field values
8045 - ctx  - optional user-defined function context
8046 
8047   Level: developer
8048 
8049   Developer Notes:
8050   This API is specific to only particular usage of `DM`
8051 
8052   The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation.
8053 
8054 .seealso: [](ch_dmbase), `DM`, `DMProjectFunctionLocal()`, `DMProjectFunctionLabel()`, `DMComputeL2Diff()`
8055 @*/
8056 PetscErrorCode DMProjectFunction(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt dim, PetscReal time, const PetscReal x[], PetscInt Nc, PetscScalar *u, void *ctx), void **ctxs, InsertMode mode, Vec X)
8057 {
8058   Vec localX;
8059 
8060   PetscFunctionBegin;
8061   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
8062   PetscCall(PetscLogEventBegin(DM_ProjectFunction, dm, X, 0, 0));
8063   PetscCall(DMGetLocalVector(dm, &localX));
8064   PetscCall(VecSet(localX, 0.));
8065   PetscCall(DMProjectFunctionLocal(dm, time, funcs, ctxs, mode, localX));
8066   PetscCall(DMLocalToGlobalBegin(dm, localX, mode, X));
8067   PetscCall(DMLocalToGlobalEnd(dm, localX, mode, X));
8068   PetscCall(DMRestoreLocalVector(dm, &localX));
8069   PetscCall(PetscLogEventEnd(DM_ProjectFunction, dm, X, 0, 0));
8070   PetscFunctionReturn(PETSC_SUCCESS);
8071 }
8072 
8073 /*@C
8074   DMProjectFunctionLocal - This projects the given function into the function space provided by a `DM`, putting the coefficients in a local vector.
8075 
8076   Not Collective
8077 
8078   Input Parameters:
8079 + dm    - The `DM`
8080 . time  - The time
8081 . funcs - The coordinate functions to evaluate, one per field
8082 . ctxs  - Optional array of contexts to pass to each coordinate function.  ctxs itself may be null.
8083 - mode  - The insertion mode for values
8084 
8085   Output Parameter:
8086 . localX - vector
8087 
8088   Calling sequence of `funcs`:
8089 + dim  - The spatial dimension
8090 . time - The current timestep
8091 . x    - The coordinates
8092 . Nc   - The number of components
8093 . u    - The output field values
8094 - ctx  - optional user-defined function context
8095 
8096   Level: developer
8097 
8098   Developer Notes:
8099   This API is specific to only particular usage of `DM`
8100 
8101   The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation.
8102 
8103 .seealso: [](ch_dmbase), `DM`, `DMProjectFunction()`, `DMProjectFunctionLabel()`, `DMComputeL2Diff()`
8104 @*/
8105 PetscErrorCode DMProjectFunctionLocal(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt dim, PetscReal time, const PetscReal x[], PetscInt Nc, PetscScalar *u, void *ctx), void **ctxs, InsertMode mode, Vec localX)
8106 {
8107   PetscFunctionBegin;
8108   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
8109   PetscValidHeaderSpecific(localX, VEC_CLASSID, 6);
8110   PetscUseTypeMethod(dm, projectfunctionlocal, time, funcs, ctxs, mode, localX);
8111   PetscFunctionReturn(PETSC_SUCCESS);
8112 }
8113 
8114 /*@C
8115   DMProjectFunctionLabel - This projects the given function into the function space provided by the `DM`, putting the coefficients in a global vector, setting values only for points in the given label.
8116 
8117   Collective
8118 
8119   Input Parameters:
8120 + dm     - The `DM`
8121 . time   - The time
8122 . numIds - The number of ids
8123 . ids    - The ids
8124 . Nc     - The number of components
8125 . comps  - The components
8126 . label  - The `DMLabel` selecting the portion of the mesh for projection
8127 . funcs  - The coordinate functions to evaluate, one per field
8128 . ctxs   - Optional array of contexts to pass to each coordinate function.  ctxs may be null.
8129 - mode   - The insertion mode for values
8130 
8131   Output Parameter:
8132 . X - vector
8133 
8134   Calling sequence of `funcs`:
8135 + dim  - The spatial dimension
8136 . time - The current timestep
8137 . x    - The coordinates
8138 . Nc   - The number of components
8139 . u    - The output field values
8140 - ctx  - optional user-defined function context
8141 
8142   Level: developer
8143 
8144   Developer Notes:
8145   This API is specific to only particular usage of `DM`
8146 
8147   The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation.
8148 
8149 .seealso: [](ch_dmbase), `DM`, `DMProjectFunction()`, `DMProjectFunctionLocal()`, `DMProjectFunctionLabelLocal()`, `DMComputeL2Diff()`
8150 @*/
8151 PetscErrorCode DMProjectFunctionLabel(DM dm, PetscReal time, DMLabel label, PetscInt numIds, const PetscInt ids[], PetscInt Nc, const PetscInt comps[], PetscErrorCode (**funcs)(PetscInt dim, PetscReal time, const PetscReal x[], PetscInt Nc, PetscScalar *u, void *ctx), void **ctxs, InsertMode mode, Vec X)
8152 {
8153   Vec localX;
8154 
8155   PetscFunctionBegin;
8156   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
8157   PetscCall(DMGetLocalVector(dm, &localX));
8158   PetscCall(VecSet(localX, 0.));
8159   PetscCall(DMProjectFunctionLabelLocal(dm, time, label, numIds, ids, Nc, comps, funcs, ctxs, mode, localX));
8160   PetscCall(DMLocalToGlobalBegin(dm, localX, mode, X));
8161   PetscCall(DMLocalToGlobalEnd(dm, localX, mode, X));
8162   PetscCall(DMRestoreLocalVector(dm, &localX));
8163   PetscFunctionReturn(PETSC_SUCCESS);
8164 }
8165 
8166 /*@C
8167   DMProjectFunctionLabelLocal - This projects the given function into the function space provided by the `DM`, putting the coefficients in a local vector, setting values only for points in the given label.
8168 
8169   Not Collective
8170 
8171   Input Parameters:
8172 + dm     - The `DM`
8173 . time   - The time
8174 . label  - The `DMLabel` selecting the portion of the mesh for projection
8175 . numIds - The number of ids
8176 . ids    - The ids
8177 . Nc     - The number of components
8178 . comps  - The components
8179 . funcs  - The coordinate functions to evaluate, one per field
8180 . ctxs   - Optional array of contexts to pass to each coordinate function.  ctxs itself may be null.
8181 - mode   - The insertion mode for values
8182 
8183   Output Parameter:
8184 . localX - vector
8185 
8186   Calling sequence of `funcs`:
8187 + dim  - The spatial dimension
8188 . time - The current time
8189 . x    - The coordinates
8190 . Nc   - The number of components
8191 . u    - The output field values
8192 - ctx  - optional user-defined function context
8193 
8194   Level: developer
8195 
8196   Developer Notes:
8197   This API is specific to only particular usage of `DM`
8198 
8199   The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation.
8200 
8201 .seealso: [](ch_dmbase), `DM`, `DMProjectFunction()`, `DMProjectFunctionLocal()`, `DMProjectFunctionLabel()`, `DMComputeL2Diff()`
8202 @*/
8203 PetscErrorCode DMProjectFunctionLabelLocal(DM dm, PetscReal time, DMLabel label, PetscInt numIds, const PetscInt ids[], PetscInt Nc, const PetscInt comps[], PetscErrorCode (**funcs)(PetscInt dim, PetscReal time, const PetscReal x[], PetscInt Nc, PetscScalar *u, void *ctx), void **ctxs, InsertMode mode, Vec localX)
8204 {
8205   PetscFunctionBegin;
8206   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
8207   PetscValidHeaderSpecific(localX, VEC_CLASSID, 11);
8208   PetscUseTypeMethod(dm, projectfunctionlabellocal, time, label, numIds, ids, Nc, comps, funcs, ctxs, mode, localX);
8209   PetscFunctionReturn(PETSC_SUCCESS);
8210 }
8211 
8212 /*@C
8213   DMProjectFieldLocal - This projects the given function of the input fields into the function space provided by the `DM`, putting the coefficients in a local vector.
8214 
8215   Not Collective
8216 
8217   Input Parameters:
8218 + dm     - The `DM`
8219 . time   - The time
8220 . localU - The input field vector; may be `NULL` if projection is defined purely by coordinates
8221 . funcs  - The functions to evaluate, one per field
8222 - mode   - The insertion mode for values
8223 
8224   Output Parameter:
8225 . localX - The output vector
8226 
8227   Calling sequence of `funcs`:
8228 + dim          - The spatial dimension
8229 . Nf           - The number of input fields
8230 . NfAux        - The number of input auxiliary fields
8231 . uOff         - The offset of each field in u[]
8232 . uOff_x       - The offset of each field in u_x[]
8233 . u            - The field values at this point in space
8234 . u_t          - The field time derivative at this point in space (or NULL)
8235 . u_x          - The field derivatives at this point in space
8236 . aOff         - The offset of each auxiliary field in u[]
8237 . aOff_x       - The offset of each auxiliary field in u_x[]
8238 . a            - The auxiliary field values at this point in space
8239 . a_t          - The auxiliary field time derivative at this point in space (or NULL)
8240 . a_x          - The auxiliary field derivatives at this point in space
8241 . t            - The current time
8242 . x            - The coordinates of this point
8243 . numConstants - The number of constants
8244 . constants    - The value of each constant
8245 - f            - The value of the function at this point in space
8246 
8247   Note:
8248   There are three different `DM`s that potentially interact in this function. The output `DM`, dm, specifies the layout of the values calculates by funcs.
8249   The input `DM`, attached to U, may be different. For example, you can input the solution over the full domain, but output over a piece of the boundary, or
8250   a subdomain. You can also output a different number of fields than the input, with different discretizations. Last the auxiliary `DM`, attached to the
8251   auxiliary field vector, which is attached to dm, can also be different. It can have a different topology, number of fields, and discretizations.
8252 
8253   Level: intermediate
8254 
8255   Developer Notes:
8256   This API is specific to only particular usage of `DM`
8257 
8258   The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation.
8259 
8260 .seealso: [](ch_dmbase), `DM`, `DMProjectField()`, `DMProjectFieldLabelLocal()`,
8261 `DMProjectFunction()`, `DMComputeL2Diff()`
8262 @*/
8263 PetscErrorCode DMProjectFieldLocal(DM dm, PetscReal time, Vec localU, void (**funcs)(PetscInt dim, PetscInt Nf, PetscInt NfAux, const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[], const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[], PetscReal t, const PetscReal x[], PetscInt numConstants, const PetscScalar constants[], PetscScalar f[]), InsertMode mode, Vec localX)
8264 {
8265   PetscFunctionBegin;
8266   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
8267   if (localU) PetscValidHeaderSpecific(localU, VEC_CLASSID, 3);
8268   PetscValidHeaderSpecific(localX, VEC_CLASSID, 6);
8269   PetscUseTypeMethod(dm, projectfieldlocal, time, localU, funcs, mode, localX);
8270   PetscFunctionReturn(PETSC_SUCCESS);
8271 }
8272 
8273 /*@C
8274   DMProjectFieldLabelLocal - This projects the given function of the input fields into the function space provided, putting the coefficients in a local vector, calculating only over the portion of the domain specified by the label.
8275 
8276   Not Collective
8277 
8278   Input Parameters:
8279 + dm     - The `DM`
8280 . time   - The time
8281 . label  - The `DMLabel` marking the portion of the domain to output
8282 . numIds - The number of label ids to use
8283 . ids    - The label ids to use for marking
8284 . Nc     - The number of components to set in the output, or `PETSC_DETERMINE` for all components
8285 . comps  - The components to set in the output, or `NULL` for all components
8286 . localU - The input field vector
8287 . funcs  - The functions to evaluate, one per field
8288 - mode   - The insertion mode for values
8289 
8290   Output Parameter:
8291 . localX - The output vector
8292 
8293   Calling sequence of `funcs`:
8294 + dim          - The spatial dimension
8295 . Nf           - The number of input fields
8296 . NfAux        - The number of input auxiliary fields
8297 . uOff         - The offset of each field in u[]
8298 . uOff_x       - The offset of each field in u_x[]
8299 . u            - The field values at this point in space
8300 . u_t          - The field time derivative at this point in space (or NULL)
8301 . u_x          - The field derivatives at this point in space
8302 . aOff         - The offset of each auxiliary field in u[]
8303 . aOff_x       - The offset of each auxiliary field in u_x[]
8304 . a            - The auxiliary field values at this point in space
8305 . a_t          - The auxiliary field time derivative at this point in space (or NULL)
8306 . a_x          - The auxiliary field derivatives at this point in space
8307 . t            - The current time
8308 . x            - The coordinates of this point
8309 . numConstants - The number of constants
8310 . constants    - The value of each constant
8311 - f            - The value of the function at this point in space
8312 
8313   Note:
8314   There are three different `DM`s that potentially interact in this function. The output `DM`, dm, specifies the layout of the values calculates by funcs.
8315   The input `DM`, attached to localU, may be different. For example, you can input the solution over the full domain, but output over a piece of the boundary, or
8316   a subdomain. You can also output a different number of fields than the input, with different discretizations. Last the auxiliary `DM`, attached to the
8317   auxiliary field vector, which is attached to dm, can also be different. It can have a different topology, number of fields, and discretizations.
8318 
8319   Level: intermediate
8320 
8321   Developer Notes:
8322   This API is specific to only particular usage of `DM`
8323 
8324   The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation.
8325 
8326 .seealso: [](ch_dmbase), `DM`, `DMProjectField()`, `DMProjectFieldLabel()`, `DMProjectFunction()`, `DMComputeL2Diff()`
8327 @*/
8328 PetscErrorCode DMProjectFieldLabelLocal(DM dm, PetscReal time, DMLabel label, PetscInt numIds, const PetscInt ids[], PetscInt Nc, const PetscInt comps[], Vec localU, void (**funcs)(PetscInt dim, PetscInt Nf, PetscInt NfAux, const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[], const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[], PetscReal t, const PetscReal x[], PetscInt numConstants, const PetscScalar constants[], PetscScalar f[]), InsertMode mode, Vec localX)
8329 {
8330   PetscFunctionBegin;
8331   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
8332   PetscValidHeaderSpecific(localU, VEC_CLASSID, 8);
8333   PetscValidHeaderSpecific(localX, VEC_CLASSID, 11);
8334   PetscUseTypeMethod(dm, projectfieldlabellocal, time, label, numIds, ids, Nc, comps, localU, funcs, mode, localX);
8335   PetscFunctionReturn(PETSC_SUCCESS);
8336 }
8337 
8338 /*@C
8339   DMProjectFieldLabel - This projects the given function of the input fields into the function space provided, putting the coefficients in a global vector, calculating only over the portion of the domain specified by the label.
8340 
8341   Not Collective
8342 
8343   Input Parameters:
8344 + dm     - The `DM`
8345 . time   - The time
8346 . label  - The `DMLabel` marking the portion of the domain to output
8347 . numIds - The number of label ids to use
8348 . ids    - The label ids to use for marking
8349 . Nc     - The number of components to set in the output, or `PETSC_DETERMINE` for all components
8350 . comps  - The components to set in the output, or `NULL` for all components
8351 . U      - The input field vector
8352 . funcs  - The functions to evaluate, one per field
8353 - mode   - The insertion mode for values
8354 
8355   Output Parameter:
8356 . X - The output vector
8357 
8358   Calling sequence of `funcs`:
8359 + dim          - The spatial dimension
8360 . Nf           - The number of input fields
8361 . NfAux        - The number of input auxiliary fields
8362 . uOff         - The offset of each field in u[]
8363 . uOff_x       - The offset of each field in u_x[]
8364 . u            - The field values at this point in space
8365 . u_t          - The field time derivative at this point in space (or NULL)
8366 . u_x          - The field derivatives at this point in space
8367 . aOff         - The offset of each auxiliary field in u[]
8368 . aOff_x       - The offset of each auxiliary field in u_x[]
8369 . a            - The auxiliary field values at this point in space
8370 . a_t          - The auxiliary field time derivative at this point in space (or NULL)
8371 . a_x          - The auxiliary field derivatives at this point in space
8372 . t            - The current time
8373 . x            - The coordinates of this point
8374 . numConstants - The number of constants
8375 . constants    - The value of each constant
8376 - f            - The value of the function at this point in space
8377 
8378   Note:
8379   There are three different `DM`s that potentially interact in this function. The output `DM`, dm, specifies the layout of the values calculates by funcs.
8380   The input `DM`, attached to U, may be different. For example, you can input the solution over the full domain, but output over a piece of the boundary, or
8381   a subdomain. You can also output a different number of fields than the input, with different discretizations. Last the auxiliary `DM`, attached to the
8382   auxiliary field vector, which is attached to dm, can also be different. It can have a different topology, number of fields, and discretizations.
8383 
8384   Level: intermediate
8385 
8386   Developer Notes:
8387   This API is specific to only particular usage of `DM`
8388 
8389   The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation.
8390 
8391 .seealso: [](ch_dmbase), `DM`, `DMProjectField()`, `DMProjectFieldLabelLocal()`, `DMProjectFunction()`, `DMComputeL2Diff()`
8392 @*/
8393 PetscErrorCode DMProjectFieldLabel(DM dm, PetscReal time, DMLabel label, PetscInt numIds, const PetscInt ids[], PetscInt Nc, const PetscInt comps[], Vec U, void (**funcs)(PetscInt dim, PetscInt Nf, PetscInt NfAux, const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[], const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[], PetscReal t, const PetscReal x[], PetscInt numConstants, const PetscScalar constants[], PetscScalar f[]), InsertMode mode, Vec X)
8394 {
8395   DM  dmIn;
8396   Vec localU, localX;
8397 
8398   PetscFunctionBegin;
8399   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
8400   PetscCall(VecGetDM(U, &dmIn));
8401   PetscCall(DMGetLocalVector(dmIn, &localU));
8402   PetscCall(DMGetLocalVector(dm, &localX));
8403   PetscCall(VecSet(localX, 0.));
8404   PetscCall(DMGlobalToLocalBegin(dmIn, U, mode, localU));
8405   PetscCall(DMGlobalToLocalEnd(dmIn, U, mode, localU));
8406   PetscCall(DMProjectFieldLabelLocal(dm, time, label, numIds, ids, Nc, comps, localU, funcs, mode, localX));
8407   PetscCall(DMLocalToGlobalBegin(dm, localX, mode, X));
8408   PetscCall(DMLocalToGlobalEnd(dm, localX, mode, X));
8409   PetscCall(DMRestoreLocalVector(dm, &localX));
8410   PetscCall(DMRestoreLocalVector(dmIn, &localU));
8411   PetscFunctionReturn(PETSC_SUCCESS);
8412 }
8413 
8414 /*@C
8415   DMProjectBdFieldLabelLocal - This projects the given function of the input fields into the function space provided, putting the coefficients in a local vector, calculating only over the portion of the domain boundary specified by the label.
8416 
8417   Not Collective
8418 
8419   Input Parameters:
8420 + dm     - The `DM`
8421 . time   - The time
8422 . label  - The `DMLabel` marking the portion of the domain boundary to output
8423 . numIds - The number of label ids to use
8424 . ids    - The label ids to use for marking
8425 . Nc     - The number of components to set in the output, or `PETSC_DETERMINE` for all components
8426 . comps  - The components to set in the output, or `NULL` for all components
8427 . localU - The input field vector
8428 . funcs  - The functions to evaluate, one per field
8429 - mode   - The insertion mode for values
8430 
8431   Output Parameter:
8432 . localX - The output vector
8433 
8434   Calling sequence of `funcs`:
8435 + dim          - The spatial dimension
8436 . Nf           - The number of input fields
8437 . NfAux        - The number of input auxiliary fields
8438 . uOff         - The offset of each field in u[]
8439 . uOff_x       - The offset of each field in u_x[]
8440 . u            - The field values at this point in space
8441 . u_t          - The field time derivative at this point in space (or NULL)
8442 . u_x          - The field derivatives at this point in space
8443 . aOff         - The offset of each auxiliary field in u[]
8444 . aOff_x       - The offset of each auxiliary field in u_x[]
8445 . a            - The auxiliary field values at this point in space
8446 . a_t          - The auxiliary field time derivative at this point in space (or NULL)
8447 . a_x          - The auxiliary field derivatives at this point in space
8448 . t            - The current time
8449 . x            - The coordinates of this point
8450 . n            - The face normal
8451 . numConstants - The number of constants
8452 . constants    - The value of each constant
8453 - f            - The value of the function at this point in space
8454 
8455   Note:
8456   There are three different `DM`s that potentially interact in this function. The output `DM`, dm, specifies the layout of the values calculates by funcs.
8457   The input `DM`, attached to U, may be different. For example, you can input the solution over the full domain, but output over a piece of the boundary, or
8458   a subdomain. You can also output a different number of fields than the input, with different discretizations. Last the auxiliary `DM`, attached to the
8459   auxiliary field vector, which is attached to dm, can also be different. It can have a different topology, number of fields, and discretizations.
8460 
8461   Level: intermediate
8462 
8463   Developer Notes:
8464   This API is specific to only particular usage of `DM`
8465 
8466   The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation.
8467 
8468 .seealso: [](ch_dmbase), `DM`, `DMProjectField()`, `DMProjectFieldLabelLocal()`, `DMProjectFunction()`, `DMComputeL2Diff()`
8469 @*/
8470 PetscErrorCode DMProjectBdFieldLabelLocal(DM dm, PetscReal time, DMLabel label, PetscInt numIds, const PetscInt ids[], PetscInt Nc, const PetscInt comps[], Vec localU, void (**funcs)(PetscInt dim, PetscInt Nf, PetscInt NfAux, const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[], const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[], PetscReal t, const PetscReal x[], const PetscReal n[], PetscInt numConstants, const PetscScalar constants[], PetscScalar f[]), InsertMode mode, Vec localX)
8471 {
8472   PetscFunctionBegin;
8473   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
8474   PetscValidHeaderSpecific(localU, VEC_CLASSID, 8);
8475   PetscValidHeaderSpecific(localX, VEC_CLASSID, 11);
8476   PetscUseTypeMethod(dm, projectbdfieldlabellocal, time, label, numIds, ids, Nc, comps, localU, funcs, mode, localX);
8477   PetscFunctionReturn(PETSC_SUCCESS);
8478 }
8479 
8480 /*@C
8481   DMComputeL2Diff - This function computes the L_2 difference between a function u and an FEM interpolant solution u_h.
8482 
8483   Collective
8484 
8485   Input Parameters:
8486 + dm    - The `DM`
8487 . time  - The time
8488 . funcs - The functions to evaluate for each field component
8489 . ctxs  - Optional array of contexts to pass to each function, or NULL.
8490 - X     - The coefficient vector u_h, a global vector
8491 
8492   Output Parameter:
8493 . diff - The diff ||u - u_h||_2
8494 
8495   Level: developer
8496 
8497   Developer Notes:
8498   This API is specific to only particular usage of `DM`
8499 
8500   The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation.
8501 
8502 .seealso: [](ch_dmbase), `DM`, `DMProjectFunction()`, `DMComputeL2FieldDiff()`, `DMComputeL2GradientDiff()`
8503 @*/
8504 PetscErrorCode DMComputeL2Diff(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal[], PetscInt, PetscScalar *, void *), void **ctxs, Vec X, PetscReal *diff)
8505 {
8506   PetscFunctionBegin;
8507   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
8508   PetscValidHeaderSpecific(X, VEC_CLASSID, 5);
8509   PetscUseTypeMethod(dm, computel2diff, time, funcs, ctxs, X, diff);
8510   PetscFunctionReturn(PETSC_SUCCESS);
8511 }
8512 
8513 /*@C
8514   DMComputeL2GradientDiff - This function computes the L_2 difference between the gradient of a function u and an FEM interpolant solution grad u_h.
8515 
8516   Collective
8517 
8518   Input Parameters:
8519 + dm    - The `DM`
8520 . time  - The time
8521 . funcs - The gradient functions to evaluate for each field component
8522 . ctxs  - Optional array of contexts to pass to each function, or NULL.
8523 . X     - The coefficient vector u_h, a global vector
8524 - n     - The vector to project along
8525 
8526   Output Parameter:
8527 . diff - The diff ||(grad u - grad u_h) . n||_2
8528 
8529   Level: developer
8530 
8531   Developer Notes:
8532   This API is specific to only particular usage of `DM`
8533 
8534   The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation.
8535 
8536 .seealso: [](ch_dmbase), `DM`, `DMProjectFunction()`, `DMComputeL2Diff()`, `DMComputeL2FieldDiff()`
8537 @*/
8538 PetscErrorCode DMComputeL2GradientDiff(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal[], const PetscReal[], PetscInt, PetscScalar *, void *), void **ctxs, Vec X, const PetscReal n[], PetscReal *diff)
8539 {
8540   PetscFunctionBegin;
8541   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
8542   PetscValidHeaderSpecific(X, VEC_CLASSID, 5);
8543   PetscUseTypeMethod(dm, computel2gradientdiff, time, funcs, ctxs, X, n, diff);
8544   PetscFunctionReturn(PETSC_SUCCESS);
8545 }
8546 
8547 /*@C
8548   DMComputeL2FieldDiff - This function computes the L_2 difference between a function u and an FEM interpolant solution u_h, separated into field components.
8549 
8550   Collective
8551 
8552   Input Parameters:
8553 + dm    - The `DM`
8554 . time  - The time
8555 . funcs - The functions to evaluate for each field component
8556 . ctxs  - Optional array of contexts to pass to each function, or NULL.
8557 - X     - The coefficient vector u_h, a global vector
8558 
8559   Output Parameter:
8560 . diff - The array of differences, ||u^f - u^f_h||_2
8561 
8562   Level: developer
8563 
8564   Developer Notes:
8565   This API is specific to only particular usage of `DM`
8566 
8567   The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation.
8568 
8569 .seealso: [](ch_dmbase), `DM`, `DMProjectFunction()`, `DMComputeL2GradientDiff()`
8570 @*/
8571 PetscErrorCode DMComputeL2FieldDiff(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal[], PetscInt, PetscScalar *, void *), void **ctxs, Vec X, PetscReal diff[])
8572 {
8573   PetscFunctionBegin;
8574   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
8575   PetscValidHeaderSpecific(X, VEC_CLASSID, 5);
8576   PetscUseTypeMethod(dm, computel2fielddiff, time, funcs, ctxs, X, diff);
8577   PetscFunctionReturn(PETSC_SUCCESS);
8578 }
8579 
8580 /*@C
8581   DMGetNeighbors - Gets an array containing the MPI ranks of all the processes neighbors
8582 
8583   Not Collective
8584 
8585   Input Parameter:
8586 . dm - The `DM`
8587 
8588   Output Parameters:
8589 + nranks - the number of neighbours
8590 - ranks  - the neighbors ranks
8591 
8592   Level: beginner
8593 
8594   Note:
8595   Do not free the array, it is freed when the `DM` is destroyed.
8596 
8597 .seealso: [](ch_dmbase), `DM`, `DMDAGetNeighbors()`, `PetscSFGetRootRanks()`
8598 @*/
8599 PetscErrorCode DMGetNeighbors(DM dm, PetscInt *nranks, const PetscMPIInt *ranks[])
8600 {
8601   PetscFunctionBegin;
8602   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
8603   PetscUseTypeMethod(dm, getneighbors, nranks, ranks);
8604   PetscFunctionReturn(PETSC_SUCCESS);
8605 }
8606 
8607 #include <petsc/private/matimpl.h> /* Needed because of coloring->ctype below */
8608 
8609 /*
8610     Converts the input vector to a ghosted vector and then calls the standard coloring code.
8611     This must be a different function because it requires DM which is not defined in the Mat library
8612 */
8613 static PetscErrorCode MatFDColoringApply_AIJDM(Mat J, MatFDColoring coloring, Vec x1, void *sctx)
8614 {
8615   PetscFunctionBegin;
8616   if (coloring->ctype == IS_COLORING_LOCAL) {
8617     Vec x1local;
8618     DM  dm;
8619     PetscCall(MatGetDM(J, &dm));
8620     PetscCheck(dm, PetscObjectComm((PetscObject)J), PETSC_ERR_ARG_INCOMP, "IS_COLORING_LOCAL requires a DM");
8621     PetscCall(DMGetLocalVector(dm, &x1local));
8622     PetscCall(DMGlobalToLocalBegin(dm, x1, INSERT_VALUES, x1local));
8623     PetscCall(DMGlobalToLocalEnd(dm, x1, INSERT_VALUES, x1local));
8624     x1 = x1local;
8625   }
8626   PetscCall(MatFDColoringApply_AIJ(J, coloring, x1, sctx));
8627   if (coloring->ctype == IS_COLORING_LOCAL) {
8628     DM dm;
8629     PetscCall(MatGetDM(J, &dm));
8630     PetscCall(DMRestoreLocalVector(dm, &x1));
8631   }
8632   PetscFunctionReturn(PETSC_SUCCESS);
8633 }
8634 
8635 /*@
8636   MatFDColoringUseDM - allows a `MatFDColoring` object to use the `DM` associated with the matrix to compute a `IS_COLORING_LOCAL` coloring
8637 
8638   Input Parameters:
8639 + coloring   - The matrix to get the `DM` from
8640 - fdcoloring - the `MatFDColoring` object
8641 
8642   Level: advanced
8643 
8644   Developer Notes:
8645   this routine exists because the PETSc `Mat` library does not know about the `DM` objects
8646 
8647 .seealso: [](ch_dmbase), `DM`, `MatFDColoring`, `MatFDColoringCreate()`, `ISColoringType`
8648 @*/
8649 PetscErrorCode MatFDColoringUseDM(Mat coloring, MatFDColoring fdcoloring)
8650 {
8651   PetscFunctionBegin;
8652   coloring->ops->fdcoloringapply = MatFDColoringApply_AIJDM;
8653   PetscFunctionReturn(PETSC_SUCCESS);
8654 }
8655 
8656 /*@
8657   DMGetCompatibility - determine if two `DM`s are compatible
8658 
8659   Collective
8660 
8661   Input Parameters:
8662 + dm1 - the first `DM`
8663 - dm2 - the second `DM`
8664 
8665   Output Parameters:
8666 + compatible - whether or not the two `DM`s are compatible
8667 - set        - whether or not the compatible value was actually determined and set
8668 
8669   Level: advanced
8670 
8671   Notes:
8672   Two `DM`s are deemed compatible if they represent the same parallel decomposition
8673   of the same topology. This implies that the section (field data) on one
8674   "makes sense" with respect to the topology and parallel decomposition of the other.
8675   Loosely speaking, compatible `DM`s represent the same domain and parallel
8676   decomposition, but hold different data.
8677 
8678   Typically, one would confirm compatibility if intending to simultaneously iterate
8679   over a pair of vectors obtained from different `DM`s.
8680 
8681   For example, two `DMDA` objects are compatible if they have the same local
8682   and global sizes and the same stencil width. They can have different numbers
8683   of degrees of freedom per node. Thus, one could use the node numbering from
8684   either `DM` in bounds for a loop over vectors derived from either `DM`.
8685 
8686   Consider the operation of summing data living on a 2-dof `DMDA` to data living
8687   on a 1-dof `DMDA`, which should be compatible, as in the following snippet.
8688 .vb
8689   ...
8690   PetscCall(DMGetCompatibility(da1,da2,&compatible,&set));
8691   if (set && compatible)  {
8692     PetscCall(DMDAVecGetArrayDOF(da1,vec1,&arr1));
8693     PetscCall(DMDAVecGetArrayDOF(da2,vec2,&arr2));
8694     PetscCall(DMDAGetCorners(da1,&x,&y,NULL,&m,&n,NULL));
8695     for (j=y; j<y+n; ++j) {
8696       for (i=x; i<x+m, ++i) {
8697         arr1[j][i][0] = arr2[j][i][0] + arr2[j][i][1];
8698       }
8699     }
8700     PetscCall(DMDAVecRestoreArrayDOF(da1,vec1,&arr1));
8701     PetscCall(DMDAVecRestoreArrayDOF(da2,vec2,&arr2));
8702   } else {
8703     SETERRQ(PetscObjectComm((PetscObject)da1,PETSC_ERR_ARG_INCOMP,"DMDA objects incompatible");
8704   }
8705   ...
8706 .ve
8707 
8708   Checking compatibility might be expensive for a given implementation of `DM`,
8709   or might be impossible to unambiguously confirm or deny. For this reason,
8710   this function may decline to determine compatibility, and hence users should
8711   always check the "set" output parameter.
8712 
8713   A `DM` is always compatible with itself.
8714 
8715   In the current implementation, `DM`s which live on "unequal" communicators
8716   (MPI_UNEQUAL in the terminology of MPI_Comm_compare()) are always deemed
8717   incompatible.
8718 
8719   This function is labeled "Collective," as information about all subdomains
8720   is required on each rank. However, in `DM` implementations which store all this
8721   information locally, this function may be merely "Logically Collective".
8722 
8723   Developer Notes:
8724   Compatibility is assumed to be a symmetric concept; `DM` A is compatible with `DM` B
8725   iff B is compatible with A. Thus, this function checks the implementations
8726   of both dm and dmc (if they are of different types), attempting to determine
8727   compatibility. It is left to `DM` implementers to ensure that symmetry is
8728   preserved. The simplest way to do this is, when implementing type-specific
8729   logic for this function, is to check for existing logic in the implementation
8730   of other `DM` types and let *set = PETSC_FALSE if found.
8731 
8732 .seealso: [](ch_dmbase), `DM`, `DMDACreateCompatibleDMDA()`, `DMStagCreateCompatibleDMStag()`
8733 @*/
8734 PetscErrorCode DMGetCompatibility(DM dm1, DM dm2, PetscBool *compatible, PetscBool *set)
8735 {
8736   PetscMPIInt compareResult;
8737   DMType      type, type2;
8738   PetscBool   sameType;
8739 
8740   PetscFunctionBegin;
8741   PetscValidHeaderSpecific(dm1, DM_CLASSID, 1);
8742   PetscValidHeaderSpecific(dm2, DM_CLASSID, 2);
8743 
8744   /* Declare a DM compatible with itself */
8745   if (dm1 == dm2) {
8746     *set        = PETSC_TRUE;
8747     *compatible = PETSC_TRUE;
8748     PetscFunctionReturn(PETSC_SUCCESS);
8749   }
8750 
8751   /* Declare a DM incompatible with a DM that lives on an "unequal"
8752      communicator. Note that this does not preclude compatibility with
8753      DMs living on "congruent" or "similar" communicators, but this must be
8754      determined by the implementation-specific logic */
8755   PetscCallMPI(MPI_Comm_compare(PetscObjectComm((PetscObject)dm1), PetscObjectComm((PetscObject)dm2), &compareResult));
8756   if (compareResult == MPI_UNEQUAL) {
8757     *set        = PETSC_TRUE;
8758     *compatible = PETSC_FALSE;
8759     PetscFunctionReturn(PETSC_SUCCESS);
8760   }
8761 
8762   /* Pass to the implementation-specific routine, if one exists. */
8763   if (dm1->ops->getcompatibility) {
8764     PetscUseTypeMethod(dm1, getcompatibility, dm2, compatible, set);
8765     if (*set) PetscFunctionReturn(PETSC_SUCCESS);
8766   }
8767 
8768   /* If dm1 and dm2 are of different types, then attempt to check compatibility
8769      with an implementation of this function from dm2 */
8770   PetscCall(DMGetType(dm1, &type));
8771   PetscCall(DMGetType(dm2, &type2));
8772   PetscCall(PetscStrcmp(type, type2, &sameType));
8773   if (!sameType && dm2->ops->getcompatibility) {
8774     PetscUseTypeMethod(dm2, getcompatibility, dm1, compatible, set); /* Note argument order */
8775   } else {
8776     *set = PETSC_FALSE;
8777   }
8778   PetscFunctionReturn(PETSC_SUCCESS);
8779 }
8780 
8781 /*@C
8782   DMMonitorSet - Sets an additional monitor function that is to be used after a solve to monitor discretization performance.
8783 
8784   Logically Collective
8785 
8786   Input Parameters:
8787 + dm             - the `DM`
8788 . f              - the monitor function
8789 . mctx           - [optional] user-defined context for private data for the monitor routine (use `NULL` if no context is desired)
8790 - monitordestroy - [optional] routine that frees monitor context (may be `NULL`)
8791 
8792   Options Database Key:
8793 . -dm_monitor_cancel - cancels all monitors that have been hardwired into a code by calls to `DMMonitorSet()`, but
8794                             does not cancel those set via the options database.
8795 
8796   Level: intermediate
8797 
8798   Note:
8799   Several different monitoring routines may be set by calling
8800   `DMMonitorSet()` multiple times or with `DMMonitorSetFromOptions()`; all will be called in the
8801   order in which they were set.
8802 
8803   Fortran Notes:
8804   Only a single monitor function can be set for each `DM` object
8805 
8806   Developer Notes:
8807   This API has a generic name but seems specific to a very particular aspect of the use of `DM`
8808 
8809 .seealso: [](ch_dmbase), `DM`, `DMMonitorCancel()`, `DMMonitorSetFromOptions()`, `DMMonitor()`
8810 @*/
8811 PetscErrorCode DMMonitorSet(DM dm, PetscErrorCode (*f)(DM, void *), void *mctx, PetscErrorCode (*monitordestroy)(void **))
8812 {
8813   PetscInt m;
8814 
8815   PetscFunctionBegin;
8816   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
8817   for (m = 0; m < dm->numbermonitors; ++m) {
8818     PetscBool identical;
8819 
8820     PetscCall(PetscMonitorCompare((PetscErrorCode(*)(void))f, mctx, monitordestroy, (PetscErrorCode(*)(void))dm->monitor[m], dm->monitorcontext[m], dm->monitordestroy[m], &identical));
8821     if (identical) PetscFunctionReturn(PETSC_SUCCESS);
8822   }
8823   PetscCheck(dm->numbermonitors < MAXDMMONITORS, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Too many monitors set");
8824   dm->monitor[dm->numbermonitors]          = f;
8825   dm->monitordestroy[dm->numbermonitors]   = monitordestroy;
8826   dm->monitorcontext[dm->numbermonitors++] = (void *)mctx;
8827   PetscFunctionReturn(PETSC_SUCCESS);
8828 }
8829 
8830 /*@
8831   DMMonitorCancel - Clears all the monitor functions for a `DM` object.
8832 
8833   Logically Collective
8834 
8835   Input Parameter:
8836 . dm - the DM
8837 
8838   Options Database Key:
8839 . -dm_monitor_cancel - cancels all monitors that have been hardwired
8840   into a code by calls to `DMonitorSet()`, but does not cancel those
8841   set via the options database
8842 
8843   Level: intermediate
8844 
8845   Note:
8846   There is no way to clear one specific monitor from a `DM` object.
8847 
8848 .seealso: [](ch_dmbase), `DM`, `DMMonitorSet()`, `DMMonitorSetFromOptions()`, `DMMonitor()`
8849 @*/
8850 PetscErrorCode DMMonitorCancel(DM dm)
8851 {
8852   PetscInt m;
8853 
8854   PetscFunctionBegin;
8855   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
8856   for (m = 0; m < dm->numbermonitors; ++m) {
8857     if (dm->monitordestroy[m]) PetscCall((*dm->monitordestroy[m])(&dm->monitorcontext[m]));
8858   }
8859   dm->numbermonitors = 0;
8860   PetscFunctionReturn(PETSC_SUCCESS);
8861 }
8862 
8863 /*@C
8864   DMMonitorSetFromOptions - Sets a monitor function and viewer appropriate for the type indicated by the user
8865 
8866   Collective
8867 
8868   Input Parameters:
8869 + dm           - `DM` object you wish to monitor
8870 . name         - the monitor type one is seeking
8871 . help         - message indicating what monitoring is done
8872 . manual       - manual page for the monitor
8873 . monitor      - the monitor function
8874 - monitorsetup - a function that is called once ONLY if the user selected this monitor that may set additional features of the `DM` or `PetscViewer` objects
8875 
8876   Output Parameter:
8877 . flg - Flag set if the monitor was created
8878 
8879   Level: developer
8880 
8881 .seealso: [](ch_dmbase), `DM`, `PetscOptionsGetViewer()`, `PetscOptionsGetReal()`, `PetscOptionsHasName()`, `PetscOptionsGetString()`,
8882           `PetscOptionsGetIntArray()`, `PetscOptionsGetRealArray()`, `PetscOptionsBool()`
8883           `PetscOptionsInt()`, `PetscOptionsString()`, `PetscOptionsReal()`,
8884           `PetscOptionsName()`, `PetscOptionsBegin()`, `PetscOptionsEnd()`, `PetscOptionsHeadBegin()`,
8885           `PetscOptionsStringArray()`, `PetscOptionsRealArray()`, `PetscOptionsScalar()`,
8886           `PetscOptionsBoolGroupBegin()`, `PetscOptionsBoolGroup()`, `PetscOptionsBoolGroupEnd()`,
8887           `PetscOptionsFList()`, `PetscOptionsEList()`, `DMMonitor()`, `DMMonitorSet()`
8888 @*/
8889 PetscErrorCode DMMonitorSetFromOptions(DM dm, const char name[], const char help[], const char manual[], PetscErrorCode (*monitor)(DM, void *), PetscErrorCode (*monitorsetup)(DM, PetscViewerAndFormat *), PetscBool *flg)
8890 {
8891   PetscViewer       viewer;
8892   PetscViewerFormat format;
8893 
8894   PetscFunctionBegin;
8895   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
8896   PetscCall(PetscOptionsGetViewer(PetscObjectComm((PetscObject)dm), ((PetscObject)dm)->options, ((PetscObject)dm)->prefix, name, &viewer, &format, flg));
8897   if (*flg) {
8898     PetscViewerAndFormat *vf;
8899 
8900     PetscCall(PetscViewerAndFormatCreate(viewer, format, &vf));
8901     PetscCall(PetscOptionsRestoreViewer(&viewer));
8902     if (monitorsetup) PetscCall((*monitorsetup)(dm, vf));
8903     PetscCall(DMMonitorSet(dm, (PetscErrorCode(*)(DM, void *))monitor, vf, (PetscErrorCode(*)(void **))PetscViewerAndFormatDestroy));
8904   }
8905   PetscFunctionReturn(PETSC_SUCCESS);
8906 }
8907 
8908 /*@
8909   DMMonitor - runs the user provided monitor routines, if they exist
8910 
8911   Collective
8912 
8913   Input Parameter:
8914 . dm - The `DM`
8915 
8916   Level: developer
8917 
8918   Developer Notes:
8919   Note should indicate when during the life of the `DM` the monitor is run. It appears to be
8920   related to the discretization process seems rather specialized since some `DM` have no
8921   concept of discretization.
8922 
8923 .seealso: [](ch_dmbase), `DM`, `DMMonitorSet()`, `DMMonitorSetFromOptions()`
8924 @*/
8925 PetscErrorCode DMMonitor(DM dm)
8926 {
8927   PetscInt m;
8928 
8929   PetscFunctionBegin;
8930   if (!dm) PetscFunctionReturn(PETSC_SUCCESS);
8931   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
8932   for (m = 0; m < dm->numbermonitors; ++m) PetscCall((*dm->monitor[m])(dm, dm->monitorcontext[m]));
8933   PetscFunctionReturn(PETSC_SUCCESS);
8934 }
8935 
8936 /*@
8937   DMComputeError - Computes the error assuming the user has provided the exact solution functions
8938 
8939   Collective
8940 
8941   Input Parameters:
8942 + dm  - The `DM`
8943 - sol - The solution vector
8944 
8945   Input/Output Parameter:
8946 . errors - An array of length Nf, the number of fields, or `NULL` for no output; on output
8947            contains the error in each field
8948 
8949   Output Parameter:
8950 . errorVec - A vector to hold the cellwise error (may be `NULL`)
8951 
8952   Level: developer
8953 
8954   Note:
8955   The exact solutions come from the `PetscDS` object, and the time comes from `DMGetOutputSequenceNumber()`.
8956 
8957 .seealso: [](ch_dmbase), `DM`, `DMMonitorSet()`, `DMGetRegionNumDS()`, `PetscDSGetExactSolution()`, `DMGetOutputSequenceNumber()`
8958 @*/
8959 PetscErrorCode DMComputeError(DM dm, Vec sol, PetscReal errors[], Vec *errorVec)
8960 {
8961   PetscErrorCode (**exactSol)(PetscInt, PetscReal, const PetscReal[], PetscInt, PetscScalar[], void *);
8962   void    **ctxs;
8963   PetscReal time;
8964   PetscInt  Nf, f, Nds, s;
8965 
8966   PetscFunctionBegin;
8967   PetscCall(DMGetNumFields(dm, &Nf));
8968   PetscCall(PetscCalloc2(Nf, &exactSol, Nf, &ctxs));
8969   PetscCall(DMGetNumDS(dm, &Nds));
8970   for (s = 0; s < Nds; ++s) {
8971     PetscDS         ds;
8972     DMLabel         label;
8973     IS              fieldIS;
8974     const PetscInt *fields;
8975     PetscInt        dsNf;
8976 
8977     PetscCall(DMGetRegionNumDS(dm, s, &label, &fieldIS, &ds, NULL));
8978     PetscCall(PetscDSGetNumFields(ds, &dsNf));
8979     if (fieldIS) PetscCall(ISGetIndices(fieldIS, &fields));
8980     for (f = 0; f < dsNf; ++f) {
8981       const PetscInt field = fields[f];
8982       PetscCall(PetscDSGetExactSolution(ds, field, &exactSol[field], &ctxs[field]));
8983     }
8984     if (fieldIS) PetscCall(ISRestoreIndices(fieldIS, &fields));
8985   }
8986   for (f = 0; f < Nf; ++f) PetscCheck(exactSol[f], PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "DS must contain exact solution functions in order to calculate error, missing for field %" PetscInt_FMT, f);
8987   PetscCall(DMGetOutputSequenceNumber(dm, NULL, &time));
8988   if (errors) PetscCall(DMComputeL2FieldDiff(dm, time, exactSol, ctxs, sol, errors));
8989   if (errorVec) {
8990     DM             edm;
8991     DMPolytopeType ct;
8992     PetscBool      simplex;
8993     PetscInt       dim, cStart, Nf;
8994 
8995     PetscCall(DMClone(dm, &edm));
8996     PetscCall(DMGetDimension(edm, &dim));
8997     PetscCall(DMPlexGetHeightStratum(dm, 0, &cStart, NULL));
8998     PetscCall(DMPlexGetCellType(dm, cStart, &ct));
8999     simplex = DMPolytopeTypeGetNumVertices(ct) == DMPolytopeTypeGetDim(ct) + 1 ? PETSC_TRUE : PETSC_FALSE;
9000     PetscCall(DMGetNumFields(dm, &Nf));
9001     for (f = 0; f < Nf; ++f) {
9002       PetscFE         fe, efe;
9003       PetscQuadrature q;
9004       const char     *name;
9005 
9006       PetscCall(DMGetField(dm, f, NULL, (PetscObject *)&fe));
9007       PetscCall(PetscFECreateLagrange(PETSC_COMM_SELF, dim, Nf, simplex, 0, PETSC_DETERMINE, &efe));
9008       PetscCall(PetscObjectGetName((PetscObject)fe, &name));
9009       PetscCall(PetscObjectSetName((PetscObject)efe, name));
9010       PetscCall(PetscFEGetQuadrature(fe, &q));
9011       PetscCall(PetscFESetQuadrature(efe, q));
9012       PetscCall(DMSetField(edm, f, NULL, (PetscObject)efe));
9013       PetscCall(PetscFEDestroy(&efe));
9014     }
9015     PetscCall(DMCreateDS(edm));
9016 
9017     PetscCall(DMCreateGlobalVector(edm, errorVec));
9018     PetscCall(PetscObjectSetName((PetscObject)*errorVec, "Error"));
9019     PetscCall(DMPlexComputeL2DiffVec(dm, time, exactSol, ctxs, sol, *errorVec));
9020     PetscCall(DMDestroy(&edm));
9021   }
9022   PetscCall(PetscFree2(exactSol, ctxs));
9023   PetscFunctionReturn(PETSC_SUCCESS);
9024 }
9025 
9026 /*@
9027   DMGetNumAuxiliaryVec - Get the number of auxiliary vectors associated with this `DM`
9028 
9029   Not Collective
9030 
9031   Input Parameter:
9032 . dm - The `DM`
9033 
9034   Output Parameter:
9035 . numAux - The number of auxiliary data vectors
9036 
9037   Level: advanced
9038 
9039 .seealso: [](ch_dmbase), `DM`, `DMClearAuxiliaryVec()`, `DMSetAuxiliaryVec()`, `DMGetAuxiliaryLabels()`, `DMGetAuxiliaryVec()`
9040 @*/
9041 PetscErrorCode DMGetNumAuxiliaryVec(DM dm, PetscInt *numAux)
9042 {
9043   PetscFunctionBegin;
9044   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
9045   PetscCall(PetscHMapAuxGetSize(dm->auxData, numAux));
9046   PetscFunctionReturn(PETSC_SUCCESS);
9047 }
9048 
9049 /*@
9050   DMGetAuxiliaryVec - Get the auxiliary vector for region specified by the given label and value, and equation part
9051 
9052   Not Collective
9053 
9054   Input Parameters:
9055 + dm    - The `DM`
9056 . label - The `DMLabel`
9057 . value - The label value indicating the region
9058 - part  - The equation part, or 0 if unused
9059 
9060   Output Parameter:
9061 . aux - The `Vec` holding auxiliary field data
9062 
9063   Level: advanced
9064 
9065   Note:
9066   If no auxiliary vector is found for this (label, value), (NULL, 0, 0) is checked as well.
9067 
9068 .seealso: [](ch_dmbase), `DM`, `DMClearAuxiliaryVec()`, `DMSetAuxiliaryVec()`, `DMGetNumAuxiliaryVec()`, `DMGetAuxiliaryLabels()`
9069 @*/
9070 PetscErrorCode DMGetAuxiliaryVec(DM dm, DMLabel label, PetscInt value, PetscInt part, Vec *aux)
9071 {
9072   PetscHashAuxKey key, wild = {NULL, 0, 0};
9073   PetscBool       has;
9074 
9075   PetscFunctionBegin;
9076   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
9077   if (label) PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 2);
9078   key.label = label;
9079   key.value = value;
9080   key.part  = part;
9081   PetscCall(PetscHMapAuxHas(dm->auxData, key, &has));
9082   if (has) PetscCall(PetscHMapAuxGet(dm->auxData, key, aux));
9083   else PetscCall(PetscHMapAuxGet(dm->auxData, wild, aux));
9084   PetscFunctionReturn(PETSC_SUCCESS);
9085 }
9086 
9087 /*@
9088   DMSetAuxiliaryVec - Set an auxiliary vector for region specified by the given label and value, and equation part
9089 
9090   Not Collective because auxiliary vectors are not parallel
9091 
9092   Input Parameters:
9093 + dm    - The `DM`
9094 . label - The `DMLabel`
9095 . value - The label value indicating the region
9096 . part  - The equation part, or 0 if unused
9097 - aux   - The `Vec` holding auxiliary field data
9098 
9099   Level: advanced
9100 
9101 .seealso: [](ch_dmbase), `DM`, `DMClearAuxiliaryVec()`, `DMGetAuxiliaryVec()`, `DMGetAuxiliaryLabels()`, `DMCopyAuxiliaryVec()`
9102 @*/
9103 PetscErrorCode DMSetAuxiliaryVec(DM dm, DMLabel label, PetscInt value, PetscInt part, Vec aux)
9104 {
9105   Vec             old;
9106   PetscHashAuxKey key;
9107 
9108   PetscFunctionBegin;
9109   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
9110   if (label) PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 2);
9111   key.label = label;
9112   key.value = value;
9113   key.part  = part;
9114   PetscCall(PetscHMapAuxGet(dm->auxData, key, &old));
9115   PetscCall(PetscObjectReference((PetscObject)aux));
9116   if (!aux) PetscCall(PetscHMapAuxDel(dm->auxData, key));
9117   else PetscCall(PetscHMapAuxSet(dm->auxData, key, aux));
9118   PetscCall(VecDestroy(&old));
9119   PetscFunctionReturn(PETSC_SUCCESS);
9120 }
9121 
9122 /*@C
9123   DMGetAuxiliaryLabels - Get the labels, values, and parts for all auxiliary vectors in this `DM`
9124 
9125   Not Collective
9126 
9127   Input Parameter:
9128 . dm - The `DM`
9129 
9130   Output Parameters:
9131 + labels - The `DMLabel`s for each `Vec`
9132 . values - The label values for each `Vec`
9133 - parts  - The equation parts for each `Vec`
9134 
9135   Level: advanced
9136 
9137   Note:
9138   The arrays passed in must be at least as large as `DMGetNumAuxiliaryVec()`.
9139 
9140 .seealso: [](ch_dmbase), `DM`, `DMClearAuxiliaryVec()`, `DMGetNumAuxiliaryVec()`, `DMGetAuxiliaryVec()`, `DMSetAuxiliaryVec()`, `DMCopyAuxiliaryVec()`
9141 @*/
9142 PetscErrorCode DMGetAuxiliaryLabels(DM dm, DMLabel labels[], PetscInt values[], PetscInt parts[])
9143 {
9144   PetscHashAuxKey *keys;
9145   PetscInt         n, i, off = 0;
9146 
9147   PetscFunctionBegin;
9148   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
9149   PetscAssertPointer(labels, 2);
9150   PetscAssertPointer(values, 3);
9151   PetscAssertPointer(parts, 4);
9152   PetscCall(DMGetNumAuxiliaryVec(dm, &n));
9153   PetscCall(PetscMalloc1(n, &keys));
9154   PetscCall(PetscHMapAuxGetKeys(dm->auxData, &off, keys));
9155   for (i = 0; i < n; ++i) {
9156     labels[i] = keys[i].label;
9157     values[i] = keys[i].value;
9158     parts[i]  = keys[i].part;
9159   }
9160   PetscCall(PetscFree(keys));
9161   PetscFunctionReturn(PETSC_SUCCESS);
9162 }
9163 
9164 /*@
9165   DMCopyAuxiliaryVec - Copy the auxiliary vector data on a `DM` to a new `DM`
9166 
9167   Not Collective
9168 
9169   Input Parameter:
9170 . dm - The `DM`
9171 
9172   Output Parameter:
9173 . dmNew - The new `DM`, now with the same auxiliary data
9174 
9175   Level: advanced
9176 
9177   Note:
9178   This is a shallow copy of the auxiliary vectors
9179 
9180 .seealso: [](ch_dmbase), `DM`, `DMClearAuxiliaryVec()`, `DMGetNumAuxiliaryVec()`, `DMGetAuxiliaryVec()`, `DMSetAuxiliaryVec()`
9181 @*/
9182 PetscErrorCode DMCopyAuxiliaryVec(DM dm, DM dmNew)
9183 {
9184   PetscFunctionBegin;
9185   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
9186   PetscValidHeaderSpecific(dmNew, DM_CLASSID, 2);
9187   if (dm == dmNew) PetscFunctionReturn(PETSC_SUCCESS);
9188   PetscCall(DMClearAuxiliaryVec(dmNew));
9189 
9190   PetscCall(PetscHMapAuxDestroy(&dmNew->auxData));
9191   PetscCall(PetscHMapAuxDuplicate(dm->auxData, &dmNew->auxData));
9192   {
9193     Vec     *auxData;
9194     PetscInt n, i, off = 0;
9195 
9196     PetscCall(PetscHMapAuxGetSize(dmNew->auxData, &n));
9197     PetscCall(PetscMalloc1(n, &auxData));
9198     PetscCall(PetscHMapAuxGetVals(dmNew->auxData, &off, auxData));
9199     for (i = 0; i < n; ++i) PetscCall(PetscObjectReference((PetscObject)auxData[i]));
9200     PetscCall(PetscFree(auxData));
9201   }
9202   PetscFunctionReturn(PETSC_SUCCESS);
9203 }
9204 
9205 /*@
9206   DMClearAuxiliaryVec - Destroys the auxiliary vector information and creates a new empty one
9207 
9208   Not Collective
9209 
9210   Input Parameter:
9211 . dm - The `DM`
9212 
9213   Level: advanced
9214 
9215 .seealso: [](ch_dmbase), `DM`, `DMCopyAuxiliaryVec()`, `DMGetNumAuxiliaryVec()`, `DMGetAuxiliaryVec()`, `DMSetAuxiliaryVec()`
9216 @*/
9217 PetscErrorCode DMClearAuxiliaryVec(DM dm)
9218 {
9219   Vec     *auxData;
9220   PetscInt n, i, off = 0;
9221 
9222   PetscFunctionBegin;
9223   PetscCall(PetscHMapAuxGetSize(dm->auxData, &n));
9224   PetscCall(PetscMalloc1(n, &auxData));
9225   PetscCall(PetscHMapAuxGetVals(dm->auxData, &off, auxData));
9226   for (i = 0; i < n; ++i) PetscCall(VecDestroy(&auxData[i]));
9227   PetscCall(PetscFree(auxData));
9228   PetscCall(PetscHMapAuxDestroy(&dm->auxData));
9229   PetscCall(PetscHMapAuxCreate(&dm->auxData));
9230   PetscFunctionReturn(PETSC_SUCCESS);
9231 }
9232 
9233 /*@C
9234   DMPolytopeMatchOrientation - Determine an orientation (transformation) that takes the source face arrangement to the target face arrangement
9235 
9236   Not Collective
9237 
9238   Input Parameters:
9239 + ct         - The `DMPolytopeType`
9240 . sourceCone - The source arrangement of faces
9241 - targetCone - The target arrangement of faces
9242 
9243   Output Parameters:
9244 + ornt  - The orientation (transformation) which will take the source arrangement to the target arrangement
9245 - found - Flag indicating that a suitable orientation was found
9246 
9247   Level: advanced
9248 
9249   Note:
9250   An arrangement is a face order combined with an orientation for each face
9251 
9252   Each orientation (transformation) is labeled with an integer from negative `DMPolytopeTypeGetNumArrangements(ct)`/2 to `DMPolytopeTypeGetNumArrangements(ct)`/2
9253   that labels each arrangement (face ordering plus orientation for each face).
9254 
9255   See `DMPolytopeMatchVertexOrientation()` to find a new vertex orientation that takes the source vertex arrangement to the target vertex arrangement
9256 
9257 .seealso: [](ch_dmbase), `DM`, `DMPolytopeGetOrientation()`, `DMPolytopeMatchVertexOrientation()`, `DMPolytopeGetVertexOrientation()`
9258 @*/
9259 PetscErrorCode DMPolytopeMatchOrientation(DMPolytopeType ct, const PetscInt sourceCone[], const PetscInt targetCone[], PetscInt *ornt, PetscBool *found)
9260 {
9261   const PetscInt cS = DMPolytopeTypeGetConeSize(ct);
9262   const PetscInt nO = DMPolytopeTypeGetNumArrangements(ct) / 2;
9263   PetscInt       o, c;
9264 
9265   PetscFunctionBegin;
9266   if (!nO) {
9267     *ornt  = 0;
9268     *found = PETSC_TRUE;
9269     PetscFunctionReturn(PETSC_SUCCESS);
9270   }
9271   for (o = -nO; o < nO; ++o) {
9272     const PetscInt *arr = DMPolytopeTypeGetArrangement(ct, o);
9273 
9274     for (c = 0; c < cS; ++c)
9275       if (sourceCone[arr[c * 2]] != targetCone[c]) break;
9276     if (c == cS) {
9277       *ornt = o;
9278       break;
9279     }
9280   }
9281   *found = o == nO ? PETSC_FALSE : PETSC_TRUE;
9282   PetscFunctionReturn(PETSC_SUCCESS);
9283 }
9284 
9285 /*@C
9286   DMPolytopeGetOrientation - Determine an orientation (transformation) that takes the source face arrangement to the target face arrangement
9287 
9288   Not Collective
9289 
9290   Input Parameters:
9291 + ct         - The `DMPolytopeType`
9292 . sourceCone - The source arrangement of faces
9293 - targetCone - The target arrangement of faces
9294 
9295   Output Parameter:
9296 . ornt - The orientation (transformation) which will take the source arrangement to the target arrangement
9297 
9298   Level: advanced
9299 
9300   Note:
9301   This function is the same as `DMPolytopeMatchOrientation()` except it will generate an error if no suitable orientation can be found.
9302 
9303   Developer Notes:
9304   It is unclear why this function needs to exist since one can simply call `DMPolytopeMatchOrientation()` and error if none is found
9305 
9306 .seealso: [](ch_dmbase), `DM`, `DMPolytopeType`, `DMPolytopeMatchOrientation()`, `DMPolytopeGetVertexOrientation()`, `DMPolytopeMatchVertexOrientation()`
9307 @*/
9308 PetscErrorCode DMPolytopeGetOrientation(DMPolytopeType ct, const PetscInt sourceCone[], const PetscInt targetCone[], PetscInt *ornt)
9309 {
9310   PetscBool found;
9311 
9312   PetscFunctionBegin;
9313   PetscCall(DMPolytopeMatchOrientation(ct, sourceCone, targetCone, ornt, &found));
9314   PetscCheck(found, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Could not find orientation for %s", DMPolytopeTypes[ct]);
9315   PetscFunctionReturn(PETSC_SUCCESS);
9316 }
9317 
9318 /*@C
9319   DMPolytopeMatchVertexOrientation - Determine an orientation (transformation) that takes the source vertex arrangement to the target vertex arrangement
9320 
9321   Not Collective
9322 
9323   Input Parameters:
9324 + ct         - The `DMPolytopeType`
9325 . sourceVert - The source arrangement of vertices
9326 - targetVert - The target arrangement of vertices
9327 
9328   Output Parameters:
9329 + ornt  - The orientation (transformation) which will take the source arrangement to the target arrangement
9330 - found - Flag indicating that a suitable orientation was found
9331 
9332   Level: advanced
9333 
9334   Note:
9335   An arrangement is a vertex order
9336 
9337   Each orientation (transformation) is labeled with an integer from negative `DMPolytopeTypeGetNumArrangements(ct)`/2 to `DMPolytopeTypeGetNumArrangements(ct)`/2
9338   that labels each arrangement (vertex ordering).
9339 
9340   See `DMPolytopeMatchOrientation()` to find a new face orientation that takes the source face arrangement to the target face arrangement
9341 
9342 .seealso: [](ch_dmbase), `DM`, `DMPolytopeType`, `DMPolytopeGetOrientation()`, `DMPolytopeMatchOrientation()`, `DMPolytopeTypeGetNumVertices()`, `DMPolytopeTypeGetVertexArrangement()`
9343 @*/
9344 PetscErrorCode DMPolytopeMatchVertexOrientation(DMPolytopeType ct, const PetscInt sourceVert[], const PetscInt targetVert[], PetscInt *ornt, PetscBool *found)
9345 {
9346   const PetscInt cS = DMPolytopeTypeGetNumVertices(ct);
9347   const PetscInt nO = DMPolytopeTypeGetNumArrangements(ct) / 2;
9348   PetscInt       o, c;
9349 
9350   PetscFunctionBegin;
9351   if (!nO) {
9352     *ornt  = 0;
9353     *found = PETSC_TRUE;
9354     PetscFunctionReturn(PETSC_SUCCESS);
9355   }
9356   for (o = -nO; o < nO; ++o) {
9357     const PetscInt *arr = DMPolytopeTypeGetVertexArrangement(ct, o);
9358 
9359     for (c = 0; c < cS; ++c)
9360       if (sourceVert[arr[c]] != targetVert[c]) break;
9361     if (c == cS) {
9362       *ornt = o;
9363       break;
9364     }
9365   }
9366   *found = o == nO ? PETSC_FALSE : PETSC_TRUE;
9367   PetscFunctionReturn(PETSC_SUCCESS);
9368 }
9369 
9370 /*@C
9371   DMPolytopeGetVertexOrientation - Determine an orientation (transformation) that takes the source vertex arrangement to the target vertex arrangement
9372 
9373   Not Collective
9374 
9375   Input Parameters:
9376 + ct         - The `DMPolytopeType`
9377 . sourceCone - The source arrangement of vertices
9378 - targetCone - The target arrangement of vertices
9379 
9380   Output Parameter:
9381 . ornt - The orientation (transformation) which will take the source arrangement to the target arrangement
9382 
9383   Level: advanced
9384 
9385   Note:
9386   This function is the same as `DMPolytopeMatchVertexOrientation()` except it errors if not orientation is possible.
9387 
9388   Developer Notes:
9389   It is unclear why this function needs to exist since one can simply call `DMPolytopeMatchVertexOrientation()` and error if none is found
9390 
9391 .seealso: [](ch_dmbase), `DM`, `DMPolytopeType`, `DMPolytopeMatchVertexOrientation()`, `DMPolytopeGetOrientation()`
9392 @*/
9393 PetscErrorCode DMPolytopeGetVertexOrientation(DMPolytopeType ct, const PetscInt sourceCone[], const PetscInt targetCone[], PetscInt *ornt)
9394 {
9395   PetscBool found;
9396 
9397   PetscFunctionBegin;
9398   PetscCall(DMPolytopeMatchVertexOrientation(ct, sourceCone, targetCone, ornt, &found));
9399   PetscCheck(found, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Could not find orientation for %s", DMPolytopeTypes[ct]);
9400   PetscFunctionReturn(PETSC_SUCCESS);
9401 }
9402 
9403 /*@C
9404   DMPolytopeInCellTest - Check whether a point lies inside the reference cell of given type
9405 
9406   Not Collective
9407 
9408   Input Parameters:
9409 + ct    - The `DMPolytopeType`
9410 - point - Coordinates of the point
9411 
9412   Output Parameter:
9413 . inside - Flag indicating whether the point is inside the reference cell of given type
9414 
9415   Level: advanced
9416 
9417 .seealso: [](ch_dmbase), `DM`, `DMPolytopeType`, `DMLocatePoints()`
9418 @*/
9419 PetscErrorCode DMPolytopeInCellTest(DMPolytopeType ct, const PetscReal point[], PetscBool *inside)
9420 {
9421   PetscReal sum = 0.0;
9422   PetscInt  d;
9423 
9424   PetscFunctionBegin;
9425   *inside = PETSC_TRUE;
9426   switch (ct) {
9427   case DM_POLYTOPE_TRIANGLE:
9428   case DM_POLYTOPE_TETRAHEDRON:
9429     for (d = 0; d < DMPolytopeTypeGetDim(ct); ++d) {
9430       if (point[d] < -1.0) {
9431         *inside = PETSC_FALSE;
9432         break;
9433       }
9434       sum += point[d];
9435     }
9436     if (sum > PETSC_SMALL) {
9437       *inside = PETSC_FALSE;
9438       break;
9439     }
9440     break;
9441   case DM_POLYTOPE_QUADRILATERAL:
9442   case DM_POLYTOPE_HEXAHEDRON:
9443     for (d = 0; d < DMPolytopeTypeGetDim(ct); ++d)
9444       if (PetscAbsReal(point[d]) > 1. + PETSC_SMALL) {
9445         *inside = PETSC_FALSE;
9446         break;
9447       }
9448     break;
9449   default:
9450     SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Unsupported polytope type %s", DMPolytopeTypes[ct]);
9451   }
9452   PetscFunctionReturn(PETSC_SUCCESS);
9453 }
9454 
9455 /*@
9456   DMReorderSectionSetDefault - Set flag indicating whether the local section should be reordered by default
9457 
9458   Logically collective
9459 
9460   Input Parameters:
9461 + dm      - The DM
9462 - reorder - Flag for reordering
9463 
9464   Level: intermediate
9465 
9466 .seealso: `DMReorderSectionGetDefault()`
9467 @*/
9468 PetscErrorCode DMReorderSectionSetDefault(DM dm, DMReorderDefaultFlag reorder)
9469 {
9470   PetscFunctionBegin;
9471   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
9472   PetscTryMethod(dm, "DMReorderSectionSetDefault_C", (DM, DMReorderDefaultFlag), (dm, reorder));
9473   PetscFunctionReturn(PETSC_SUCCESS);
9474 }
9475 
9476 /*@
9477   DMReorderSectionGetDefault - Get flag indicating whether the local section should be reordered by default
9478 
9479   Not collective
9480 
9481   Input Parameter:
9482 . dm - The DM
9483 
9484   Output Parameter:
9485 . reorder - Flag for reordering
9486 
9487   Level: intermediate
9488 
9489 .seealso: `DMReorderSetDefault()`
9490 @*/
9491 PetscErrorCode DMReorderSectionGetDefault(DM dm, DMReorderDefaultFlag *reorder)
9492 {
9493   PetscFunctionBegin;
9494   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
9495   PetscAssertPointer(reorder, 2);
9496   *reorder = DM_REORDER_DEFAULT_NOTSET;
9497   PetscTryMethod(dm, "DMReorderSectionGetDefault_C", (DM, DMReorderDefaultFlag *), (dm, reorder));
9498   PetscFunctionReturn(PETSC_SUCCESS);
9499 }
9500 
9501 /*@C
9502   DMReorderSectionSetType - Set the type of local section reordering
9503 
9504   Logically collective
9505 
9506   Input Parameters:
9507 + dm      - The DM
9508 - reorder - The reordering method
9509 
9510   Level: intermediate
9511 
9512 .seealso: `DMReorderSectionGetType()`, `DMReorderSectionSetDefault()`
9513 @*/
9514 PetscErrorCode DMReorderSectionSetType(DM dm, MatOrderingType reorder)
9515 {
9516   PetscFunctionBegin;
9517   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
9518   PetscTryMethod(dm, "DMReorderSectionSetType_C", (DM, MatOrderingType), (dm, reorder));
9519   PetscFunctionReturn(PETSC_SUCCESS);
9520 }
9521 
9522 /*@C
9523   DMReorderSectionGetType - Get the reordering type for the local section
9524 
9525   Not collective
9526 
9527   Input Parameter:
9528 . dm - The DM
9529 
9530   Output Parameter:
9531 . reorder - The reordering method
9532 
9533   Level: intermediate
9534 
9535 .seealso: `DMReorderSetDefault()`, `DMReorderSectionGetDefault()`
9536 @*/
9537 PetscErrorCode DMReorderSectionGetType(DM dm, MatOrderingType *reorder)
9538 {
9539   PetscFunctionBegin;
9540   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
9541   PetscAssertPointer(reorder, 2);
9542   *reorder = NULL;
9543   PetscTryMethod(dm, "DMReorderSectionGetType_C", (DM, MatOrderingType *), (dm, reorder));
9544   PetscFunctionReturn(PETSC_SUCCESS);
9545 }
9546