xref: /petsc/src/dm/interface/dm.c (revision f6feae9b43250ce03bc7de7cceea6f31403e1baa)
1 #include <petscvec.h>
2 #include <petsc/private/dmimpl.h>      /*I      "petscdm.h"          I*/
3 #include <petsc/private/dmlabelimpl.h> /*I      "petscdmlabel.h"     I*/
4 #include <petsc/private/petscdsimpl.h> /*I      "petscds.h"     I*/
5 #include <petscdmplex.h>
6 #include <petscdmceed.h>
7 #include <petscdmfield.h>
8 #include <petscsf.h>
9 #include <petscds.h>
10 
11 #ifdef PETSC_HAVE_LIBCEED
12   #include <petscfeceed.h>
13 #endif
14 
15 #if !defined(PETSC_HAVE_WINDOWS_COMPILERS)
16   #include <petsc/private/valgrind/memcheck.h>
17 #endif
18 
19 PetscClassId DM_CLASSID;
20 PetscClassId DMLABEL_CLASSID;
21 PetscLogEvent DM_Convert, DM_GlobalToLocal, DM_LocalToGlobal, DM_LocalToLocal, DM_LocatePoints, DM_Coarsen, DM_Refine, DM_CreateInterpolation, DM_CreateRestriction, DM_CreateInjection, DM_CreateMatrix, DM_CreateMassMatrix, DM_Load, DM_AdaptInterpolator, DM_ProjectFunction;
22 
23 const char *const DMBoundaryTypes[]          = {"NONE", "GHOSTED", "MIRROR", "PERIODIC", "TWIST", "DMBoundaryType", "DM_BOUNDARY_", NULL};
24 const char *const DMBoundaryConditionTypes[] = {"INVALID", "ESSENTIAL", "NATURAL", "INVALID", "INVALID", "ESSENTIAL_FIELD", "NATURAL_FIELD", "INVALID", "INVALID", "ESSENTIAL_BD_FIELD", "NATURAL_RIEMANN", "DMBoundaryConditionType", "DM_BC_", NULL};
25 const char *const DMBlockingTypes[]          = {"TOPOLOGICAL_POINT", "FIELD_NODE", "DMBlockingType", "DM_BLOCKING_", NULL};
26 const char *const DMPolytopeTypes[] =
27   {"vertex",  "segment",      "tensor_segment", "triangle", "quadrilateral",  "tensor_quad",  "tetrahedron", "hexahedron", "triangular_prism", "tensor_triangular_prism", "tensor_quadrilateral_prism", "pyramid", "FV_ghost_cell", "interior_ghost_cell",
28    "unknown", "unknown_cell", "unknown_face",   "invalid",  "DMPolytopeType", "DM_POLYTOPE_", NULL};
29 const char *const DMCopyLabelsModes[] = {"replace", "keep", "fail", "DMCopyLabelsMode", "DM_COPY_LABELS_", NULL};
30 
31 /*@
32   DMCreate - Creates an empty `DM` object. `DM`s are the abstract objects in PETSc that mediate between meshes and discretizations and the
33   algebraic solvers, time integrators, and optimization algorithms.
34 
35   Collective
36 
37   Input Parameter:
38 . comm - The communicator for the `DM` object
39 
40   Output Parameter:
41 . dm - The `DM` object
42 
43   Level: beginner
44 
45   Notes:
46   See `DMType` for a brief summary of available `DM`.
47 
48   The type must then be set with `DMSetType()`. If you never call `DMSetType()` it will generate an
49   error when you try to use the dm.
50 
51 .seealso: [](ch_dmbase), `DM`, `DMSetType()`, `DMType`, `DMDACreate()`, `DMDA`, `DMSLICED`, `DMCOMPOSITE`, `DMPLEX`, `DMMOAB`, `DMNETWORK`
52 @*/
53 PetscErrorCode DMCreate(MPI_Comm comm, DM *dm)
54 {
55   DM      v;
56   PetscDS ds;
57 
58   PetscFunctionBegin;
59   PetscAssertPointer(dm, 2);
60   *dm = NULL;
61   PetscCall(DMInitializePackage());
62 
63   PetscCall(PetscHeaderCreate(v, DM_CLASSID, "DM", "Distribution Manager", "DM", comm, DMDestroy, DMView));
64 
65   ((PetscObject)v)->non_cyclic_references = &DMCountNonCyclicReferences;
66 
67   v->setupcalled          = PETSC_FALSE;
68   v->setfromoptionscalled = PETSC_FALSE;
69   v->ltogmap              = NULL;
70   v->bind_below           = 0;
71   v->bs                   = 1;
72   v->coloringtype         = IS_COLORING_GLOBAL;
73   PetscCall(PetscSFCreate(comm, &v->sf));
74   PetscCall(PetscSFCreate(comm, &v->sectionSF));
75   v->labels                    = NULL;
76   v->adjacency[0]              = PETSC_FALSE;
77   v->adjacency[1]              = PETSC_TRUE;
78   v->depthLabel                = NULL;
79   v->celltypeLabel             = NULL;
80   v->localSection              = NULL;
81   v->globalSection             = NULL;
82   v->defaultConstraint.section = NULL;
83   v->defaultConstraint.mat     = NULL;
84   v->defaultConstraint.bias    = NULL;
85   v->coordinates[0].dim        = PETSC_DEFAULT;
86   v->coordinates[1].dim        = PETSC_DEFAULT;
87   v->sparseLocalize            = PETSC_TRUE;
88   v->dim                       = PETSC_DETERMINE;
89   {
90     PetscInt i;
91     for (i = 0; i < 10; ++i) {
92       v->nullspaceConstructors[i]     = NULL;
93       v->nearnullspaceConstructors[i] = NULL;
94     }
95   }
96   PetscCall(PetscDSCreate(PETSC_COMM_SELF, &ds));
97   PetscCall(DMSetRegionDS(v, NULL, NULL, ds, NULL));
98   PetscCall(PetscDSDestroy(&ds));
99   PetscCall(PetscHMapAuxCreate(&v->auxData));
100   v->dmBC              = NULL;
101   v->coarseMesh        = NULL;
102   v->outputSequenceNum = -1;
103   v->outputSequenceVal = 0.0;
104   PetscCall(DMSetVecType(v, VECSTANDARD));
105   PetscCall(DMSetMatType(v, MATAIJ));
106 
107   *dm = v;
108   PetscFunctionReturn(PETSC_SUCCESS);
109 }
110 
111 /*@
112   DMClone - Creates a `DM` object with the same topology as the original.
113 
114   Collective
115 
116   Input Parameter:
117 . dm - The original `DM` object
118 
119   Output Parameter:
120 . newdm - The new `DM` object
121 
122   Level: beginner
123 
124   Notes:
125   For some `DM` implementations this is a shallow clone, the result of which may share (reference counted) information with its parent. For example,
126   `DMClone()` applied to a `DMPLEX` object will result in a new `DMPLEX` that shares the topology with the original `DMPLEX`. It does not
127   share the `PetscSection` of the original `DM`.
128 
129   The clone is considered set up if the original has been set up.
130 
131   Use `DMConvert()` for a general way to create new `DM` from a given `DM`
132 
133 .seealso: [](ch_dmbase), `DM`, `DMDestroy()`, `DMCreate()`, `DMSetType()`, `DMSetLocalSection()`, `DMSetGlobalSection()`, `DMPLEX`, `DMConvert()`
134 @*/
135 PetscErrorCode DMClone(DM dm, DM *newdm)
136 {
137   PetscSF              sf;
138   Vec                  coords;
139   void                *ctx;
140   MatOrderingType      otype;
141   DMReorderDefaultFlag flg;
142   PetscInt             dim, cdim, i;
143 
144   PetscFunctionBegin;
145   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
146   PetscAssertPointer(newdm, 2);
147   PetscCall(DMCreate(PetscObjectComm((PetscObject)dm), newdm));
148   PetscCall(DMCopyLabels(dm, *newdm, PETSC_COPY_VALUES, PETSC_TRUE, DM_COPY_LABELS_FAIL));
149   (*newdm)->leveldown     = dm->leveldown;
150   (*newdm)->levelup       = dm->levelup;
151   (*newdm)->prealloc_only = dm->prealloc_only;
152   (*newdm)->prealloc_skip = dm->prealloc_skip;
153   PetscCall(PetscFree((*newdm)->vectype));
154   PetscCall(PetscStrallocpy(dm->vectype, (char **)&(*newdm)->vectype));
155   PetscCall(PetscFree((*newdm)->mattype));
156   PetscCall(PetscStrallocpy(dm->mattype, (char **)&(*newdm)->mattype));
157   PetscCall(DMGetDimension(dm, &dim));
158   PetscCall(DMSetDimension(*newdm, dim));
159   PetscTryTypeMethod(dm, clone, newdm);
160   (*newdm)->setupcalled = dm->setupcalled;
161   PetscCall(DMGetPointSF(dm, &sf));
162   PetscCall(DMSetPointSF(*newdm, sf));
163   PetscCall(DMGetApplicationContext(dm, &ctx));
164   PetscCall(DMSetApplicationContext(*newdm, ctx));
165   PetscCall(DMReorderSectionGetDefault(dm, &flg));
166   PetscCall(DMReorderSectionSetDefault(*newdm, flg));
167   PetscCall(DMReorderSectionGetType(dm, &otype));
168   PetscCall(DMReorderSectionSetType(*newdm, otype));
169   for (i = 0; i < 2; ++i) {
170     if (dm->coordinates[i].dm) {
171       DM           ncdm;
172       PetscSection cs;
173       PetscInt     pEnd = -1, pEndMax = -1;
174 
175       PetscCall(DMGetLocalSection(dm->coordinates[i].dm, &cs));
176       if (cs) PetscCall(PetscSectionGetChart(cs, NULL, &pEnd));
177       PetscCall(MPIU_Allreduce(&pEnd, &pEndMax, 1, MPIU_INT, MPI_MAX, PetscObjectComm((PetscObject)dm)));
178       if (pEndMax >= 0) {
179         PetscCall(DMClone(dm->coordinates[i].dm, &ncdm));
180         PetscCall(DMCopyDisc(dm->coordinates[i].dm, ncdm));
181         PetscCall(DMSetLocalSection(ncdm, cs));
182         if (i) PetscCall(DMSetCellCoordinateDM(*newdm, ncdm));
183         else PetscCall(DMSetCoordinateDM(*newdm, ncdm));
184         PetscCall(DMDestroy(&ncdm));
185       }
186     }
187   }
188   PetscCall(DMGetCoordinateDim(dm, &cdim));
189   PetscCall(DMSetCoordinateDim(*newdm, cdim));
190   PetscCall(DMGetCoordinatesLocal(dm, &coords));
191   if (coords) {
192     PetscCall(DMSetCoordinatesLocal(*newdm, coords));
193   } else {
194     PetscCall(DMGetCoordinates(dm, &coords));
195     if (coords) PetscCall(DMSetCoordinates(*newdm, coords));
196   }
197   PetscCall(DMGetCellCoordinatesLocal(dm, &coords));
198   if (coords) {
199     PetscCall(DMSetCellCoordinatesLocal(*newdm, coords));
200   } else {
201     PetscCall(DMGetCellCoordinates(dm, &coords));
202     if (coords) PetscCall(DMSetCellCoordinates(*newdm, coords));
203   }
204   {
205     const PetscReal *maxCell, *Lstart, *L;
206 
207     PetscCall(DMGetPeriodicity(dm, &maxCell, &Lstart, &L));
208     PetscCall(DMSetPeriodicity(*newdm, maxCell, Lstart, L));
209   }
210   {
211     PetscBool useCone, useClosure;
212 
213     PetscCall(DMGetAdjacency(dm, PETSC_DEFAULT, &useCone, &useClosure));
214     PetscCall(DMSetAdjacency(*newdm, PETSC_DEFAULT, useCone, useClosure));
215   }
216   PetscFunctionReturn(PETSC_SUCCESS);
217 }
218 
219 /*@C
220   DMSetVecType - Sets the type of vector created with `DMCreateLocalVector()` and `DMCreateGlobalVector()`
221 
222   Logically Collective
223 
224   Input Parameters:
225 + dm    - initial distributed array
226 - ctype - the vector type, for example `VECSTANDARD`, `VECCUDA`, or `VECVIENNACL`
227 
228   Options Database Key:
229 . -dm_vec_type ctype - the type of vector to create
230 
231   Level: intermediate
232 
233 .seealso: [](ch_dmbase), `DM`, `DMCreate()`, `DMDestroy()`, `DMDAInterpolationType`, `VecType`, `DMGetVecType()`, `DMSetMatType()`, `DMGetMatType()`,
234           `VECSTANDARD`, `VECCUDA`, `VECVIENNACL`, `DMCreateLocalVector()`, `DMCreateGlobalVector()`
235 @*/
236 PetscErrorCode DMSetVecType(DM dm, VecType ctype)
237 {
238   char *tmp;
239 
240   PetscFunctionBegin;
241   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
242   PetscAssertPointer(ctype, 2);
243   tmp = (char *)dm->vectype;
244   PetscCall(PetscStrallocpy(ctype, (char **)&dm->vectype));
245   PetscCall(PetscFree(tmp));
246   PetscFunctionReturn(PETSC_SUCCESS);
247 }
248 
249 /*@C
250   DMGetVecType - Gets the type of vector created with `DMCreateLocalVector()` and `DMCreateGlobalVector()`
251 
252   Logically Collective
253 
254   Input Parameter:
255 . da - initial distributed array
256 
257   Output Parameter:
258 . ctype - the vector type
259 
260   Level: intermediate
261 
262 .seealso: [](ch_dmbase), `DM`, `DMCreate()`, `DMDestroy()`, `DMDAInterpolationType`, `VecType`, `DMSetMatType()`, `DMGetMatType()`, `DMSetVecType()`
263 @*/
264 PetscErrorCode DMGetVecType(DM da, VecType *ctype)
265 {
266   PetscFunctionBegin;
267   PetscValidHeaderSpecific(da, DM_CLASSID, 1);
268   *ctype = da->vectype;
269   PetscFunctionReturn(PETSC_SUCCESS);
270 }
271 
272 /*@
273   VecGetDM - Gets the `DM` defining the data layout of the vector
274 
275   Not Collective
276 
277   Input Parameter:
278 . v - The `Vec`
279 
280   Output Parameter:
281 . dm - The `DM`
282 
283   Level: intermediate
284 
285   Note:
286   A `Vec` may not have a `DM` associated with it.
287 
288 .seealso: [](ch_dmbase), `DM`, `VecSetDM()`, `DMGetLocalVector()`, `DMGetGlobalVector()`, `DMSetVecType()`
289 @*/
290 PetscErrorCode VecGetDM(Vec v, DM *dm)
291 {
292   PetscFunctionBegin;
293   PetscValidHeaderSpecific(v, VEC_CLASSID, 1);
294   PetscAssertPointer(dm, 2);
295   PetscCall(PetscObjectQuery((PetscObject)v, "__PETSc_dm", (PetscObject *)dm));
296   PetscFunctionReturn(PETSC_SUCCESS);
297 }
298 
299 /*@
300   VecSetDM - Sets the `DM` defining the data layout of the vector.
301 
302   Not Collective
303 
304   Input Parameters:
305 + v  - The `Vec`
306 - dm - The `DM`
307 
308   Level: developer
309 
310   Note:
311   This is rarely used, generally one uses `DMGetLocalVector()` or  `DMGetGlobalVector()` to create a vector associated with a given `DM`
312 
313   This is NOT the same as `DMCreateGlobalVector()` since it does not change the view methods or perform other customization, but merely sets the `DM` member.
314 
315 .seealso: [](ch_dmbase), `DM`, `VecGetDM()`, `DMGetLocalVector()`, `DMGetGlobalVector()`, `DMSetVecType()`
316 @*/
317 PetscErrorCode VecSetDM(Vec v, DM dm)
318 {
319   PetscFunctionBegin;
320   PetscValidHeaderSpecific(v, VEC_CLASSID, 1);
321   if (dm) PetscValidHeaderSpecific(dm, DM_CLASSID, 2);
322   PetscCall(PetscObjectCompose((PetscObject)v, "__PETSc_dm", (PetscObject)dm));
323   PetscFunctionReturn(PETSC_SUCCESS);
324 }
325 
326 /*@C
327   DMSetISColoringType - Sets the type of coloring, `IS_COLORING_GLOBAL` or `IS_COLORING_LOCAL` that is created by the `DM`
328 
329   Logically Collective
330 
331   Input Parameters:
332 + dm    - the `DM` context
333 - ctype - the matrix type
334 
335   Options Database Key:
336 . -dm_is_coloring_type - global or local
337 
338   Level: intermediate
339 
340 .seealso: [](ch_dmbase), `DM`, `DMDACreate1d()`, `DMDACreate2d()`, `DMDACreate3d()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMSetMatrixPreallocateOnly()`, `MatType`, `DMGetMatType()`,
341           `DMGetISColoringType()`, `ISColoringType`, `IS_COLORING_GLOBAL`, `IS_COLORING_LOCAL`
342 @*/
343 PetscErrorCode DMSetISColoringType(DM dm, ISColoringType ctype)
344 {
345   PetscFunctionBegin;
346   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
347   dm->coloringtype = ctype;
348   PetscFunctionReturn(PETSC_SUCCESS);
349 }
350 
351 /*@C
352   DMGetISColoringType - Gets the type of coloring, `IS_COLORING_GLOBAL` or `IS_COLORING_LOCAL` that is created by the `DM`
353 
354   Logically Collective
355 
356   Input Parameter:
357 . dm - the `DM` context
358 
359   Output Parameter:
360 . ctype - the matrix type
361 
362   Options Database Key:
363 . -dm_is_coloring_type - global or local
364 
365   Level: intermediate
366 
367 .seealso: [](ch_dmbase), `DM`, `DMDACreate1d()`, `DMDACreate2d()`, `DMDACreate3d()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMSetMatrixPreallocateOnly()`, `MatType`, `DMGetMatType()`,
368           `ISColoringType`, `IS_COLORING_GLOBAL`, `IS_COLORING_LOCAL`
369 @*/
370 PetscErrorCode DMGetISColoringType(DM dm, ISColoringType *ctype)
371 {
372   PetscFunctionBegin;
373   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
374   *ctype = dm->coloringtype;
375   PetscFunctionReturn(PETSC_SUCCESS);
376 }
377 
378 /*@C
379   DMSetMatType - Sets the type of matrix created with `DMCreateMatrix()`
380 
381   Logically Collective
382 
383   Input Parameters:
384 + dm    - the `DM` context
385 - ctype - the matrix type, for example `MATMPIAIJ`
386 
387   Options Database Key:
388 . -dm_mat_type ctype - the type of the matrix to create, for example mpiaij
389 
390   Level: intermediate
391 
392 .seealso: [](ch_dmbase), `DM`, `MatType`, `DMDACreate1d()`, `DMDACreate2d()`, `DMDACreate3d()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMSetMatrixPreallocateOnly()`, `DMGetMatType()`, `DMCreateGlobalVector()`, `DMCreateLocalVector()`
393 @*/
394 PetscErrorCode DMSetMatType(DM dm, MatType ctype)
395 {
396   char *tmp;
397 
398   PetscFunctionBegin;
399   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
400   PetscAssertPointer(ctype, 2);
401   tmp = (char *)dm->mattype;
402   PetscCall(PetscStrallocpy(ctype, (char **)&dm->mattype));
403   PetscCall(PetscFree(tmp));
404   PetscFunctionReturn(PETSC_SUCCESS);
405 }
406 
407 /*@C
408   DMGetMatType - Gets the type of matrix that would be created with `DMCreateMatrix()`
409 
410   Logically Collective
411 
412   Input Parameter:
413 . dm - the `DM` context
414 
415   Output Parameter:
416 . ctype - the matrix type
417 
418   Level: intermediate
419 
420 .seealso: [](ch_dmbase), `DM`, `DMDACreate1d()`, `DMDACreate2d()`, `DMDACreate3d()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMSetMatrixPreallocateOnly()`, `MatType`, `DMSetMatType()`
421 @*/
422 PetscErrorCode DMGetMatType(DM dm, MatType *ctype)
423 {
424   PetscFunctionBegin;
425   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
426   *ctype = dm->mattype;
427   PetscFunctionReturn(PETSC_SUCCESS);
428 }
429 
430 /*@
431   MatGetDM - Gets the `DM` defining the data layout of the matrix
432 
433   Not Collective
434 
435   Input Parameter:
436 . A - The `Mat`
437 
438   Output Parameter:
439 . dm - The `DM`
440 
441   Level: intermediate
442 
443   Note:
444   A matrix may not have a `DM` associated with it
445 
446   Developer Notes:
447   Since the `Mat` class doesn't know about the `DM` class the `DM` object is associated with the `Mat` through a `PetscObjectCompose()` operation
448 
449 .seealso: [](ch_dmbase), `DM`, `MatSetDM()`, `DMCreateMatrix()`, `DMSetMatType()`
450 @*/
451 PetscErrorCode MatGetDM(Mat A, DM *dm)
452 {
453   PetscFunctionBegin;
454   PetscValidHeaderSpecific(A, MAT_CLASSID, 1);
455   PetscAssertPointer(dm, 2);
456   PetscCall(PetscObjectQuery((PetscObject)A, "__PETSc_dm", (PetscObject *)dm));
457   PetscFunctionReturn(PETSC_SUCCESS);
458 }
459 
460 /*@
461   MatSetDM - Sets the `DM` defining the data layout of the matrix
462 
463   Not Collective
464 
465   Input Parameters:
466 + A  - The `Mat`
467 - dm - The `DM`
468 
469   Level: developer
470 
471   Note:
472   This is rarely used in practice, rather `DMCreateMatrix()` is used to create a matrix associated with a particular `DM`
473 
474   Developer Notes:
475   Since the `Mat` class doesn't know about the `DM` class the `DM` object is associated with
476   the `Mat` through a `PetscObjectCompose()` operation
477 
478 .seealso: [](ch_dmbase), `DM`, `MatGetDM()`, `DMCreateMatrix()`, `DMSetMatType()`
479 @*/
480 PetscErrorCode MatSetDM(Mat A, DM dm)
481 {
482   PetscFunctionBegin;
483   PetscValidHeaderSpecific(A, MAT_CLASSID, 1);
484   if (dm) PetscValidHeaderSpecific(dm, DM_CLASSID, 2);
485   PetscCall(PetscObjectCompose((PetscObject)A, "__PETSc_dm", (PetscObject)dm));
486   PetscFunctionReturn(PETSC_SUCCESS);
487 }
488 
489 /*@C
490   DMSetOptionsPrefix - Sets the prefix prepended to all option names when searching through the options database
491 
492   Logically Collective
493 
494   Input Parameters:
495 + dm     - the `DM` context
496 - prefix - the prefix to prepend
497 
498   Level: advanced
499 
500   Note:
501   A hyphen (-) must NOT be given at the beginning of the prefix name.
502   The first character of all runtime options is AUTOMATICALLY the hyphen.
503 
504 .seealso: [](ch_dmbase), `DM`, `PetscObjectSetOptionsPrefix()`, `DMSetFromOptions()`
505 @*/
506 PetscErrorCode DMSetOptionsPrefix(DM dm, const char prefix[])
507 {
508   PetscFunctionBegin;
509   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
510   PetscCall(PetscObjectSetOptionsPrefix((PetscObject)dm, prefix));
511   if (dm->sf) PetscCall(PetscObjectSetOptionsPrefix((PetscObject)dm->sf, prefix));
512   if (dm->sectionSF) PetscCall(PetscObjectSetOptionsPrefix((PetscObject)dm->sectionSF, prefix));
513   PetscFunctionReturn(PETSC_SUCCESS);
514 }
515 
516 /*@C
517   DMAppendOptionsPrefix - Appends an additional string to an already existing prefix used for searching for
518   `DM` options in the options database.
519 
520   Logically Collective
521 
522   Input Parameters:
523 + dm     - the `DM` context
524 - prefix - the string to append to the current prefix
525 
526   Level: advanced
527 
528   Note:
529   If the `DM` does not currently have an options prefix then this value is used alone as the prefix as if `DMSetOptionsPrefix()` had been called.
530   A hyphen (-) must NOT be given at the beginning of the prefix name.
531   The first character of all runtime options is AUTOMATICALLY the hyphen.
532 
533 .seealso: [](ch_dmbase), `DM`, `DMSetOptionsPrefix()`, `DMGetOptionsPrefix()`, `PetscObjectAppendOptionsPrefix()`, `DMSetFromOptions()`
534 @*/
535 PetscErrorCode DMAppendOptionsPrefix(DM dm, const char prefix[])
536 {
537   PetscFunctionBegin;
538   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
539   PetscCall(PetscObjectAppendOptionsPrefix((PetscObject)dm, prefix));
540   PetscFunctionReturn(PETSC_SUCCESS);
541 }
542 
543 /*@C
544   DMGetOptionsPrefix - Gets the prefix used for searching for all
545   DM options in the options database.
546 
547   Not Collective
548 
549   Input Parameter:
550 . dm - the `DM` context
551 
552   Output Parameter:
553 . prefix - pointer to the prefix string used is returned
554 
555   Level: advanced
556 
557   Fortran Notes:
558   Pass in a string 'prefix' of
559   sufficient length to hold the prefix.
560 
561 .seealso: [](ch_dmbase), `DM`, `DMSetOptionsPrefix()`, `DMAppendOptionsPrefix()`, `DMSetFromOptions()`
562 @*/
563 PetscErrorCode DMGetOptionsPrefix(DM dm, const char *prefix[])
564 {
565   PetscFunctionBegin;
566   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
567   PetscCall(PetscObjectGetOptionsPrefix((PetscObject)dm, prefix));
568   PetscFunctionReturn(PETSC_SUCCESS);
569 }
570 
571 static PetscErrorCode DMCountNonCyclicReferences_Internal(DM dm, PetscBool recurseCoarse, PetscBool recurseFine, PetscInt *ncrefct)
572 {
573   PetscInt refct = ((PetscObject)dm)->refct;
574 
575   PetscFunctionBegin;
576   *ncrefct = 0;
577   if (dm->coarseMesh && dm->coarseMesh->fineMesh == dm) {
578     refct--;
579     if (recurseCoarse) {
580       PetscInt coarseCount;
581 
582       PetscCall(DMCountNonCyclicReferences_Internal(dm->coarseMesh, PETSC_TRUE, PETSC_FALSE, &coarseCount));
583       refct += coarseCount;
584     }
585   }
586   if (dm->fineMesh && dm->fineMesh->coarseMesh == dm) {
587     refct--;
588     if (recurseFine) {
589       PetscInt fineCount;
590 
591       PetscCall(DMCountNonCyclicReferences_Internal(dm->fineMesh, PETSC_FALSE, PETSC_TRUE, &fineCount));
592       refct += fineCount;
593     }
594   }
595   *ncrefct = refct;
596   PetscFunctionReturn(PETSC_SUCCESS);
597 }
598 
599 /* Generic wrapper for DMCountNonCyclicReferences_Internal() */
600 PetscErrorCode DMCountNonCyclicReferences(PetscObject dm, PetscInt *ncrefct)
601 {
602   PetscFunctionBegin;
603   PetscCall(DMCountNonCyclicReferences_Internal((DM)dm, PETSC_TRUE, PETSC_TRUE, ncrefct));
604   PetscFunctionReturn(PETSC_SUCCESS);
605 }
606 
607 PetscErrorCode DMDestroyLabelLinkList_Internal(DM dm)
608 {
609   DMLabelLink next = dm->labels;
610 
611   PetscFunctionBegin;
612   /* destroy the labels */
613   while (next) {
614     DMLabelLink tmp = next->next;
615 
616     if (next->label == dm->depthLabel) dm->depthLabel = NULL;
617     if (next->label == dm->celltypeLabel) dm->celltypeLabel = NULL;
618     PetscCall(DMLabelDestroy(&next->label));
619     PetscCall(PetscFree(next));
620     next = tmp;
621   }
622   dm->labels = NULL;
623   PetscFunctionReturn(PETSC_SUCCESS);
624 }
625 
626 static PetscErrorCode DMDestroyCoordinates_Private(DMCoordinates *c)
627 {
628   PetscFunctionBegin;
629   c->dim = PETSC_DEFAULT;
630   PetscCall(DMDestroy(&c->dm));
631   PetscCall(VecDestroy(&c->x));
632   PetscCall(VecDestroy(&c->xl));
633   PetscCall(DMFieldDestroy(&c->field));
634   PetscFunctionReturn(PETSC_SUCCESS);
635 }
636 
637 /*@C
638   DMDestroy - Destroys a `DM`.
639 
640   Collective
641 
642   Input Parameter:
643 . dm - the `DM` object to destroy
644 
645   Level: developer
646 
647 .seealso: [](ch_dmbase), `DM`, `DMCreate()`, `DMType`, `DMSetType()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`
648 @*/
649 PetscErrorCode DMDestroy(DM *dm)
650 {
651   PetscInt cnt;
652 
653   PetscFunctionBegin;
654   if (!*dm) PetscFunctionReturn(PETSC_SUCCESS);
655   PetscValidHeaderSpecific((*dm), DM_CLASSID, 1);
656 
657   /* count all non-cyclic references in the doubly-linked list of coarse<->fine meshes */
658   PetscCall(DMCountNonCyclicReferences_Internal(*dm, PETSC_TRUE, PETSC_TRUE, &cnt));
659   --((PetscObject)(*dm))->refct;
660   if (--cnt > 0) {
661     *dm = NULL;
662     PetscFunctionReturn(PETSC_SUCCESS);
663   }
664   if (((PetscObject)(*dm))->refct < 0) PetscFunctionReturn(PETSC_SUCCESS);
665   ((PetscObject)(*dm))->refct = 0;
666 
667   PetscCall(DMClearGlobalVectors(*dm));
668   PetscCall(DMClearLocalVectors(*dm));
669   PetscCall(DMClearNamedGlobalVectors(*dm));
670   PetscCall(DMClearNamedLocalVectors(*dm));
671 
672   /* Destroy the list of hooks */
673   {
674     DMCoarsenHookLink link, next;
675     for (link = (*dm)->coarsenhook; link; link = next) {
676       next = link->next;
677       PetscCall(PetscFree(link));
678     }
679     (*dm)->coarsenhook = NULL;
680   }
681   {
682     DMRefineHookLink link, next;
683     for (link = (*dm)->refinehook; link; link = next) {
684       next = link->next;
685       PetscCall(PetscFree(link));
686     }
687     (*dm)->refinehook = NULL;
688   }
689   {
690     DMSubDomainHookLink link, next;
691     for (link = (*dm)->subdomainhook; link; link = next) {
692       next = link->next;
693       PetscCall(PetscFree(link));
694     }
695     (*dm)->subdomainhook = NULL;
696   }
697   {
698     DMGlobalToLocalHookLink link, next;
699     for (link = (*dm)->gtolhook; link; link = next) {
700       next = link->next;
701       PetscCall(PetscFree(link));
702     }
703     (*dm)->gtolhook = NULL;
704   }
705   {
706     DMLocalToGlobalHookLink link, next;
707     for (link = (*dm)->ltoghook; link; link = next) {
708       next = link->next;
709       PetscCall(PetscFree(link));
710     }
711     (*dm)->ltoghook = NULL;
712   }
713   /* Destroy the work arrays */
714   {
715     DMWorkLink link, next;
716     PetscCheck(!(*dm)->workout, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Work array still checked out %p %p", (void *)(*dm)->workout, (void *)(*dm)->workout->mem);
717     for (link = (*dm)->workin; link; link = next) {
718       next = link->next;
719       PetscCall(PetscFree(link->mem));
720       PetscCall(PetscFree(link));
721     }
722     (*dm)->workin = NULL;
723   }
724   /* destroy the labels */
725   PetscCall(DMDestroyLabelLinkList_Internal(*dm));
726   /* destroy the fields */
727   PetscCall(DMClearFields(*dm));
728   /* destroy the boundaries */
729   {
730     DMBoundary next = (*dm)->boundary;
731     while (next) {
732       DMBoundary b = next;
733 
734       next = b->next;
735       PetscCall(PetscFree(b));
736     }
737   }
738 
739   PetscCall(PetscObjectDestroy(&(*dm)->dmksp));
740   PetscCall(PetscObjectDestroy(&(*dm)->dmsnes));
741   PetscCall(PetscObjectDestroy(&(*dm)->dmts));
742 
743   if ((*dm)->ctx && (*dm)->ctxdestroy) PetscCall((*(*dm)->ctxdestroy)(&(*dm)->ctx));
744   PetscCall(MatFDColoringDestroy(&(*dm)->fd));
745   PetscCall(ISLocalToGlobalMappingDestroy(&(*dm)->ltogmap));
746   PetscCall(PetscFree((*dm)->vectype));
747   PetscCall(PetscFree((*dm)->mattype));
748 
749   PetscCall(PetscSectionDestroy(&(*dm)->localSection));
750   PetscCall(PetscSectionDestroy(&(*dm)->globalSection));
751   PetscCall(PetscFree((*dm)->reorderSectionType));
752   PetscCall(PetscLayoutDestroy(&(*dm)->map));
753   PetscCall(PetscSectionDestroy(&(*dm)->defaultConstraint.section));
754   PetscCall(MatDestroy(&(*dm)->defaultConstraint.mat));
755   PetscCall(PetscSFDestroy(&(*dm)->sf));
756   PetscCall(PetscSFDestroy(&(*dm)->sectionSF));
757   if ((*dm)->sfNatural) PetscCall(PetscSFDestroy(&(*dm)->sfNatural));
758   PetscCall(PetscObjectDereference((PetscObject)(*dm)->sfMigration));
759   PetscCall(DMClearAuxiliaryVec(*dm));
760   PetscCall(PetscHMapAuxDestroy(&(*dm)->auxData));
761   if ((*dm)->coarseMesh && (*dm)->coarseMesh->fineMesh == *dm) PetscCall(DMSetFineDM((*dm)->coarseMesh, NULL));
762 
763   PetscCall(DMDestroy(&(*dm)->coarseMesh));
764   if ((*dm)->fineMesh && (*dm)->fineMesh->coarseMesh == *dm) PetscCall(DMSetCoarseDM((*dm)->fineMesh, NULL));
765   PetscCall(DMDestroy(&(*dm)->fineMesh));
766   PetscCall(PetscFree((*dm)->Lstart));
767   PetscCall(PetscFree((*dm)->L));
768   PetscCall(PetscFree((*dm)->maxCell));
769   PetscCall(DMDestroyCoordinates_Private(&(*dm)->coordinates[0]));
770   PetscCall(DMDestroyCoordinates_Private(&(*dm)->coordinates[1]));
771   if ((*dm)->transformDestroy) PetscCall((*(*dm)->transformDestroy)(*dm, (*dm)->transformCtx));
772   PetscCall(DMDestroy(&(*dm)->transformDM));
773   PetscCall(VecDestroy(&(*dm)->transform));
774   PetscCall(VecScatterDestroy(&(*dm)->periodic.affine_to_local));
775   PetscCall(VecDestroy(&(*dm)->periodic.affine));
776 
777   PetscCall(DMClearDS(*dm));
778   PetscCall(DMDestroy(&(*dm)->dmBC));
779   /* if memory was published with SAWs then destroy it */
780   PetscCall(PetscObjectSAWsViewOff((PetscObject)*dm));
781 
782   PetscTryTypeMethod(*dm, destroy);
783   PetscCall(DMMonitorCancel(*dm));
784   PetscCall(DMCeedDestroy(&(*dm)->dmceed));
785 #ifdef PETSC_HAVE_LIBCEED
786   PetscCallCEED(CeedElemRestrictionDestroy(&(*dm)->ceedERestrict));
787   PetscCallCEED(CeedDestroy(&(*dm)->ceed));
788 #endif
789   /* We do not destroy (*dm)->data here so that we can reference count backend objects */
790   PetscCall(PetscHeaderDestroy(dm));
791   PetscFunctionReturn(PETSC_SUCCESS);
792 }
793 
794 /*@
795   DMSetUp - sets up the data structures inside a `DM` object
796 
797   Collective
798 
799   Input Parameter:
800 . dm - the `DM` object to setup
801 
802   Level: intermediate
803 
804   Note:
805   This is usually called after various parameter setting operations and `DMSetFromOptions()` are called on the `DM`
806 
807 .seealso: [](ch_dmbase), `DM`, `DMCreate()`, `DMSetType()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`
808 @*/
809 PetscErrorCode DMSetUp(DM dm)
810 {
811   PetscFunctionBegin;
812   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
813   if (dm->setupcalled) PetscFunctionReturn(PETSC_SUCCESS);
814   PetscTryTypeMethod(dm, setup);
815   dm->setupcalled = PETSC_TRUE;
816   PetscFunctionReturn(PETSC_SUCCESS);
817 }
818 
819 /*@
820   DMSetFromOptions - sets parameters in a `DM` from the options database
821 
822   Collective
823 
824   Input Parameter:
825 . dm - the `DM` object to set options for
826 
827   Options Database Keys:
828 + -dm_preallocate_only                               - Only preallocate the matrix for `DMCreateMatrix()` and `DMCreateMassMatrix()`, but do not fill it with zeros
829 . -dm_vec_type <type>                                - type of vector to create inside `DM`
830 . -dm_mat_type <type>                                - type of matrix to create inside `DM`
831 . -dm_is_coloring_type                               - <global or local>
832 . -dm_bind_below <n>                                 - bind (force execution on CPU) for `Vec` and `Mat` objects with local size (number of vector entries or matrix rows) below n; currently only supported for `DMDA`
833 . -dm_plex_filename <str>                            - File containing a mesh
834 . -dm_plex_boundary_filename <str>                   - File containing a mesh boundary
835 . -dm_plex_name <str>                                - Name of the mesh in the file
836 . -dm_plex_shape <shape>                             - The domain shape, such as `BOX`, `SPHERE`, etc.
837 . -dm_plex_cell <ct>                                 - Cell shape
838 . -dm_plex_reference_cell_domain <bool>              - Use a reference cell domain
839 . -dm_plex_dim <dim>                                 - Set the topological dimension
840 . -dm_plex_simplex <bool>                            - `PETSC_TRUE` for simplex elements, `PETSC_FALSE` for tensor elements
841 . -dm_plex_interpolate <bool>                        - `PETSC_TRUE` turns on topological interpolation (creating edges and faces)
842 . -dm_plex_scale <sc>                                - Scale factor for mesh coordinates
843 . -dm_coord_remap <bool>                             - Map coordinates using a function
844 . -dm_coord_map <mapname>                            - Select a builtin coordinate map
845 . -dm_coord_map_params <p0,p1,p2,...>                - Set coordinate mapping parameters
846 . -dm_plex_box_faces <m,n,p>                         - Number of faces along each dimension
847 . -dm_plex_box_lower <x,y,z>                         - Specify lower-left-bottom coordinates for the box
848 . -dm_plex_box_upper <x,y,z>                         - Specify upper-right-top coordinates for the box
849 . -dm_plex_box_bd <bx,by,bz>                         - Specify the `DMBoundaryType` for each direction
850 . -dm_plex_sphere_radius <r>                         - The sphere radius
851 . -dm_plex_ball_radius <r>                           - Radius of the ball
852 . -dm_plex_cylinder_bd <bz>                          - Boundary type in the z direction
853 . -dm_plex_cylinder_num_wedges <n>                   - Number of wedges around the cylinder
854 . -dm_plex_reorder <order>                           - Reorder the mesh using the specified algorithm
855 . -dm_refine_pre <n>                                 - The number of refinements before distribution
856 . -dm_refine_uniform_pre <bool>                      - Flag for uniform refinement before distribution
857 . -dm_refine_volume_limit_pre <v>                    - The maximum cell volume after refinement before distribution
858 . -dm_refine <n>                                     - The number of refinements after distribution
859 . -dm_extrude <l>                                    - Activate extrusion and specify the number of layers to extrude
860 . -dm_plex_transform_extrude_thickness <t>           - The total thickness of extruded layers
861 . -dm_plex_transform_extrude_use_tensor <bool>       - Use tensor cells when extruding
862 . -dm_plex_transform_extrude_symmetric <bool>        - Extrude layers symmetrically about the surface
863 . -dm_plex_transform_extrude_normal <n0,...,nd>      - Specify the extrusion direction
864 . -dm_plex_transform_extrude_thicknesses <t0,...,tl> - Specify thickness of each layer
865 . -dm_plex_create_fv_ghost_cells                     - Flag to create finite volume ghost cells on the boundary
866 . -dm_plex_fv_ghost_cells_label <name>               - Label name for ghost cells boundary
867 . -dm_distribute <bool>                              - Flag to redistribute a mesh among processes
868 . -dm_distribute_overlap <n>                         - The size of the overlap halo
869 . -dm_plex_adj_cone <bool>                           - Set adjacency direction
870 . -dm_plex_adj_closure <bool>                        - Set adjacency size
871 . -dm_plex_use_ceed <bool>                           - Use LibCEED as the FEM backend
872 . -dm_plex_check_symmetry                            - Check that the adjacency information in the mesh is symmetric - `DMPlexCheckSymmetry()`
873 . -dm_plex_check_skeleton                            - Check that each cell has the correct number of vertices (only for homogeneous simplex or tensor meshes) - `DMPlexCheckSkeleton()`
874 . -dm_plex_check_faces                               - Check that the faces of each cell give a vertex order this is consistent with what we expect from the cell type - `DMPlexCheckFaces()`
875 . -dm_plex_check_geometry                            - Check that cells have positive volume - `DMPlexCheckGeometry()`
876 . -dm_plex_check_pointsf                             - Check some necessary conditions for `PointSF` - `DMPlexCheckPointSF()`
877 . -dm_plex_check_interface_cones                     - Check points on inter-partition interfaces have conforming order of cone points - `DMPlexCheckInterfaceCones()`
878 - -dm_plex_check_all                                 - Perform all the checks above
879 
880   Level: intermediate
881 
882 .seealso: [](ch_dmbase), `DM`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`,
883          `DMPlexCheckSymmetry()`, `DMPlexCheckSkeleton()`, `DMPlexCheckFaces()`, `DMPlexCheckGeometry()`, `DMPlexCheckPointSF()`, `DMPlexCheckInterfaceCones()`,
884          `DMSetOptionsPrefix()`, `DMType`, `DMPLEX`, `DMDA`
885 @*/
886 PetscErrorCode DMSetFromOptions(DM dm)
887 {
888   char      typeName[256];
889   PetscBool flg;
890 
891   PetscFunctionBegin;
892   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
893   dm->setfromoptionscalled = PETSC_TRUE;
894   if (dm->sf) PetscCall(PetscSFSetFromOptions(dm->sf));
895   if (dm->sectionSF) PetscCall(PetscSFSetFromOptions(dm->sectionSF));
896   if (dm->coordinates[0].dm) PetscCall(DMSetFromOptions(dm->coordinates[0].dm));
897   PetscObjectOptionsBegin((PetscObject)dm);
898   PetscCall(PetscOptionsBool("-dm_preallocate_only", "only preallocate matrix, but do not set column indices", "DMSetMatrixPreallocateOnly", dm->prealloc_only, &dm->prealloc_only, NULL));
899   PetscCall(PetscOptionsFList("-dm_vec_type", "Vector type used for created vectors", "DMSetVecType", VecList, dm->vectype, typeName, 256, &flg));
900   if (flg) PetscCall(DMSetVecType(dm, typeName));
901   PetscCall(PetscOptionsFList("-dm_mat_type", "Matrix type used for created matrices", "DMSetMatType", MatList, dm->mattype ? dm->mattype : typeName, typeName, sizeof(typeName), &flg));
902   if (flg) PetscCall(DMSetMatType(dm, typeName));
903   PetscCall(PetscOptionsEnum("-dm_blocking_type", "Topological point or field node blocking", "DMSetBlockingType", DMBlockingTypes, (PetscEnum)dm->blocking_type, (PetscEnum *)&dm->blocking_type, NULL));
904   PetscCall(PetscOptionsEnum("-dm_is_coloring_type", "Global or local coloring of Jacobian", "DMSetISColoringType", ISColoringTypes, (PetscEnum)dm->coloringtype, (PetscEnum *)&dm->coloringtype, NULL));
905   PetscCall(PetscOptionsInt("-dm_bind_below", "Set the size threshold (in entries) below which the Vec is bound to the CPU", "VecBindToCPU", dm->bind_below, &dm->bind_below, &flg));
906   PetscCall(PetscOptionsBool("-dm_ignore_perm_output", "Ignore the local section permutation on output", "DMGetOutputDM", dm->ignorePermOutput, &dm->ignorePermOutput, NULL));
907   PetscTryTypeMethod(dm, setfromoptions, PetscOptionsObject);
908   /* process any options handlers added with PetscObjectAddOptionsHandler() */
909   PetscCall(PetscObjectProcessOptionsHandlers((PetscObject)dm, PetscOptionsObject));
910   PetscOptionsEnd();
911   PetscFunctionReturn(PETSC_SUCCESS);
912 }
913 
914 /*@C
915   DMViewFromOptions - View a `DM` in a particular way based on a request in the options database
916 
917   Collective
918 
919   Input Parameters:
920 + dm   - the `DM` object
921 . obj  - optional object that provides the prefix for the options database (if `NULL` then the prefix in obj is used)
922 - name - option string that is used to activate viewing
923 
924   Level: intermediate
925 
926   Note:
927   See `PetscObjectViewFromOptions()` for a list of values that can be provided in the options database to determine how the `DM` is viewed
928 
929 .seealso: [](ch_dmbase), `DM`, `DMView()`, `PetscObjectViewFromOptions()`, `DMCreate()`
930 @*/
931 PetscErrorCode DMViewFromOptions(DM dm, PetscObject obj, const char name[])
932 {
933   PetscFunctionBegin;
934   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
935   PetscCall(PetscObjectViewFromOptions((PetscObject)dm, obj, name));
936   PetscFunctionReturn(PETSC_SUCCESS);
937 }
938 
939 /*@C
940   DMView - Views a `DM`. Depending on the `PetscViewer` and its `PetscViewerFormat` it may print some ASCII information about the `DM` to the screen or a file or
941   save the `DM` in a binary file to be loaded later or create a visualization of the `DM`
942 
943   Collective
944 
945   Input Parameters:
946 + dm - the `DM` object to view
947 - v  - the viewer
948 
949   Level: beginner
950 
951   Notes:
952   Using `PETSCVIEWERHDF5` type with `PETSC_VIEWER_HDF5_PETSC` as the `PetscViewerFormat` one can save multiple `DMPLEX`
953   meshes in a single HDF5 file. This in turn requires one to name the `DMPLEX` object with `PetscObjectSetName()`
954   before saving it with `DMView()` and before loading it with `DMLoad()` for identification of the mesh object.
955 
956 .seealso: [](ch_dmbase), `DM`, `PetscViewer`, `PetscViewerFormat`, `PetscViewerSetFormat()`, `DMDestroy()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMLoad()`, `PetscObjectSetName()`
957 @*/
958 PetscErrorCode DMView(DM dm, PetscViewer v)
959 {
960   PetscBool         isbinary;
961   PetscMPIInt       size;
962   PetscViewerFormat format;
963 
964   PetscFunctionBegin;
965   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
966   if (!v) PetscCall(PetscViewerASCIIGetStdout(PetscObjectComm((PetscObject)dm), &v));
967   PetscValidHeaderSpecific(v, PETSC_VIEWER_CLASSID, 2);
968   /* Ideally, we would like to have this test on.
969      However, it currently breaks socket viz via GLVis.
970      During DMView(parallel_mesh,glvis_viewer), each
971      process opens a sequential ASCII socket to visualize
972      the local mesh, and PetscObjectView(dm,local_socket)
973      is internally called inside VecView_GLVis, incurring
974      in an error here */
975   /* PetscCheckSameComm(dm,1,v,2); */
976   PetscCall(PetscViewerCheckWritable(v));
977 
978   PetscCall(PetscViewerGetFormat(v, &format));
979   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)dm), &size));
980   if (size == 1 && format == PETSC_VIEWER_LOAD_BALANCE) PetscFunctionReturn(PETSC_SUCCESS);
981   PetscCall(PetscObjectPrintClassNamePrefixType((PetscObject)dm, v));
982   PetscCall(PetscObjectTypeCompare((PetscObject)v, PETSCVIEWERBINARY, &isbinary));
983   if (isbinary) {
984     PetscInt classid = DM_FILE_CLASSID;
985     char     type[256];
986 
987     PetscCall(PetscViewerBinaryWrite(v, &classid, 1, PETSC_INT));
988     PetscCall(PetscStrncpy(type, ((PetscObject)dm)->type_name, sizeof(type)));
989     PetscCall(PetscViewerBinaryWrite(v, type, 256, PETSC_CHAR));
990   }
991   PetscTryTypeMethod(dm, view, v);
992   PetscFunctionReturn(PETSC_SUCCESS);
993 }
994 
995 /*@
996   DMCreateGlobalVector - Creates a global vector from a `DM` object. A global vector is a parallel vector that has no duplicate values shared between MPI ranks,
997   that is it has no ghost locations.
998 
999   Collective
1000 
1001   Input Parameter:
1002 . dm - the `DM` object
1003 
1004   Output Parameter:
1005 . vec - the global vector
1006 
1007   Level: beginner
1008 
1009 .seealso: [](ch_dmbase), `DM`, `Vec`, `DMCreateLocalVector()`, `DMGetGlobalVector()`, `DMDestroy()`, `DMView()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`,
1010          `DMGlobalToLocalBegin()`, `DMGlobalToLocalEnd()`
1011 @*/
1012 PetscErrorCode DMCreateGlobalVector(DM dm, Vec *vec)
1013 {
1014   PetscFunctionBegin;
1015   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
1016   PetscAssertPointer(vec, 2);
1017   PetscUseTypeMethod(dm, createglobalvector, vec);
1018   if (PetscDefined(USE_DEBUG)) {
1019     DM vdm;
1020 
1021     PetscCall(VecGetDM(*vec, &vdm));
1022     PetscCheck(vdm, PETSC_COMM_SELF, PETSC_ERR_PLIB, "DM type '%s' did not attach the DM to the vector", ((PetscObject)dm)->type_name);
1023   }
1024   PetscFunctionReturn(PETSC_SUCCESS);
1025 }
1026 
1027 /*@
1028   DMCreateLocalVector - Creates a local vector from a `DM` object.
1029 
1030   Not Collective
1031 
1032   Input Parameter:
1033 . dm - the `DM` object
1034 
1035   Output Parameter:
1036 . vec - the local vector
1037 
1038   Level: beginner
1039 
1040   Note:
1041   A local vector usually has ghost locations that contain values that are owned by different MPI ranks. A global vector has no ghost locations.
1042 
1043 .seealso: [](ch_dmbase), `DM`, `Vec`, `DMCreateGlobalVector()`, `DMGetLocalVector()`, `DMDestroy()`, `DMView()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`
1044          `DMGlobalToLocalBegin()`, `DMGlobalToLocalEnd()`
1045 @*/
1046 PetscErrorCode DMCreateLocalVector(DM dm, Vec *vec)
1047 {
1048   PetscFunctionBegin;
1049   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
1050   PetscAssertPointer(vec, 2);
1051   PetscUseTypeMethod(dm, createlocalvector, vec);
1052   if (PetscDefined(USE_DEBUG)) {
1053     DM vdm;
1054 
1055     PetscCall(VecGetDM(*vec, &vdm));
1056     PetscCheck(vdm, PETSC_COMM_SELF, PETSC_ERR_LIB, "DM type '%s' did not attach the DM to the vector", ((PetscObject)dm)->type_name);
1057   }
1058   PetscFunctionReturn(PETSC_SUCCESS);
1059 }
1060 
1061 /*@
1062   DMGetLocalToGlobalMapping - Accesses the local-to-global mapping in a `DM`.
1063 
1064   Collective
1065 
1066   Input Parameter:
1067 . dm - the `DM` that provides the mapping
1068 
1069   Output Parameter:
1070 . ltog - the mapping
1071 
1072   Level: advanced
1073 
1074   Notes:
1075   The global to local mapping allows one to set values into the global vector or matrix using `VecSetValuesLocal()` and `MatSetValuesLocal()`
1076 
1077   Vectors obtained with  `DMCreateGlobalVector()` and matrices obtained with `DMCreateMatrix()` already contain the global mapping so you do
1078   need to use this function with those objects.
1079 
1080   This mapping can then be used by `VecSetLocalToGlobalMapping()` or `MatSetLocalToGlobalMapping()`.
1081 
1082 .seealso: [](ch_dmbase), `DM`, `DMCreateLocalVector()`, `DMCreateGlobalVector()`, `VecSetLocalToGlobalMapping()`, `MatSetLocalToGlobalMapping()`,
1083           `DMCreateMatrix()`
1084 @*/
1085 PetscErrorCode DMGetLocalToGlobalMapping(DM dm, ISLocalToGlobalMapping *ltog)
1086 {
1087   PetscInt bs = -1, bsLocal[2], bsMinMax[2];
1088 
1089   PetscFunctionBegin;
1090   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
1091   PetscAssertPointer(ltog, 2);
1092   if (!dm->ltogmap) {
1093     PetscSection section, sectionGlobal;
1094 
1095     PetscCall(DMGetLocalSection(dm, &section));
1096     if (section) {
1097       const PetscInt *cdofs;
1098       PetscInt       *ltog;
1099       PetscInt        pStart, pEnd, n, p, k, l;
1100 
1101       PetscCall(DMGetGlobalSection(dm, &sectionGlobal));
1102       PetscCall(PetscSectionGetChart(section, &pStart, &pEnd));
1103       PetscCall(PetscSectionGetStorageSize(section, &n));
1104       PetscCall(PetscMalloc1(n, &ltog)); /* We want the local+overlap size */
1105       for (p = pStart, l = 0; p < pEnd; ++p) {
1106         PetscInt bdof, cdof, dof, off, c, cind;
1107 
1108         /* Should probably use constrained dofs */
1109         PetscCall(PetscSectionGetDof(section, p, &dof));
1110         PetscCall(PetscSectionGetConstraintDof(section, p, &cdof));
1111         PetscCall(PetscSectionGetConstraintIndices(section, p, &cdofs));
1112         PetscCall(PetscSectionGetOffset(sectionGlobal, p, &off));
1113         /* If you have dofs, and constraints, and they are unequal, we set the blocksize to 1 */
1114         bdof = cdof && (dof - cdof) ? 1 : dof;
1115         if (dof) bs = bs < 0 ? bdof : PetscGCD(bs, bdof);
1116 
1117         for (c = 0, cind = 0; c < dof; ++c, ++l) {
1118           if (cind < cdof && c == cdofs[cind]) {
1119             ltog[l] = off < 0 ? off - c : -(off + c + 1);
1120             cind++;
1121           } else {
1122             ltog[l] = (off < 0 ? -(off + 1) : off) + c - cind;
1123           }
1124         }
1125       }
1126       /* Must have same blocksize on all procs (some might have no points) */
1127       bsLocal[0] = bs < 0 ? PETSC_MAX_INT : bs;
1128       bsLocal[1] = bs;
1129       PetscCall(PetscGlobalMinMaxInt(PetscObjectComm((PetscObject)dm), bsLocal, bsMinMax));
1130       if (bsMinMax[0] != bsMinMax[1]) {
1131         bs = 1;
1132       } else {
1133         bs = bsMinMax[0];
1134       }
1135       bs = bs < 0 ? 1 : bs;
1136       /* Must reduce indices by blocksize */
1137       if (bs > 1) {
1138         for (l = 0, k = 0; l < n; l += bs, ++k) {
1139           // Integer division of negative values truncates toward zero(!), not toward negative infinity
1140           ltog[k] = ltog[l] >= 0 ? ltog[l] / bs : -(-(ltog[l] + 1) / bs + 1);
1141         }
1142         n /= bs;
1143       }
1144       PetscCall(ISLocalToGlobalMappingCreate(PetscObjectComm((PetscObject)dm), bs, n, ltog, PETSC_OWN_POINTER, &dm->ltogmap));
1145     } else PetscUseTypeMethod(dm, getlocaltoglobalmapping);
1146   }
1147   *ltog = dm->ltogmap;
1148   PetscFunctionReturn(PETSC_SUCCESS);
1149 }
1150 
1151 /*@
1152   DMGetBlockSize - Gets the inherent block size associated with a `DM`
1153 
1154   Not Collective
1155 
1156   Input Parameter:
1157 . dm - the `DM` with block structure
1158 
1159   Output Parameter:
1160 . bs - the block size, 1 implies no exploitable block structure
1161 
1162   Level: intermediate
1163 
1164   Note:
1165   This might be the number of degrees of freedom at each grid point for a structured grid.
1166 
1167   Complex `DM` that represent multiphysics or staggered grids or mixed-methods do not generally have a single inherent block size, but
1168   rather different locations in the vectors may have a different block size.
1169 
1170 .seealso: [](ch_dmbase), `DM`, `ISCreateBlock()`, `VecSetBlockSize()`, `MatSetBlockSize()`, `DMGetLocalToGlobalMapping()`
1171 @*/
1172 PetscErrorCode DMGetBlockSize(DM dm, PetscInt *bs)
1173 {
1174   PetscFunctionBegin;
1175   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
1176   PetscAssertPointer(bs, 2);
1177   PetscCheck(dm->bs >= 1, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "DM does not have enough information to provide a block size yet");
1178   *bs = dm->bs;
1179   PetscFunctionReturn(PETSC_SUCCESS);
1180 }
1181 
1182 /*@C
1183   DMCreateInterpolation - Gets the interpolation matrix between two `DM` objects. The resulting matrix map degrees of freedom in the vector obtained by
1184   `DMCreateGlobalVector()` on the coarse `DM` to similar vectors on the fine grid `DM`.
1185 
1186   Collective
1187 
1188   Input Parameters:
1189 + dmc - the `DM` object
1190 - dmf - the second, finer `DM` object
1191 
1192   Output Parameters:
1193 + mat - the interpolation
1194 - vec - the scaling (optional), see `DMCreateInterpolationScale()`
1195 
1196   Level: developer
1197 
1198   Notes:
1199   For `DMDA` objects this only works for "uniform refinement", that is the refined mesh was obtained `DMRefine()` or the coarse mesh was obtained by
1200   DMCoarsen(). The coordinates set into the `DMDA` are completely ignored in computing the interpolation.
1201 
1202   For `DMDA` objects you can use this interpolation (more precisely the interpolation from the `DMGetCoordinateDM()`) to interpolate the mesh coordinate
1203   vectors EXCEPT in the periodic case where it does not make sense since the coordinate vectors are not periodic.
1204 
1205 .seealso: [](ch_dmbase), `DM`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMRefine()`, `DMCoarsen()`, `DMCreateRestriction()`, `DMCreateInterpolationScale()`
1206 @*/
1207 PetscErrorCode DMCreateInterpolation(DM dmc, DM dmf, Mat *mat, Vec *vec)
1208 {
1209   PetscFunctionBegin;
1210   PetscValidHeaderSpecific(dmc, DM_CLASSID, 1);
1211   PetscValidHeaderSpecific(dmf, DM_CLASSID, 2);
1212   PetscAssertPointer(mat, 3);
1213   PetscCall(PetscLogEventBegin(DM_CreateInterpolation, dmc, dmf, 0, 0));
1214   PetscUseTypeMethod(dmc, createinterpolation, dmf, mat, vec);
1215   PetscCall(PetscLogEventEnd(DM_CreateInterpolation, dmc, dmf, 0, 0));
1216   PetscFunctionReturn(PETSC_SUCCESS);
1217 }
1218 
1219 /*@
1220   DMCreateInterpolationScale - Forms L = 1/(R*1) where 1 is the vector of all ones, and R is
1221   the transpose of the interpolation between the `DM`.
1222 
1223   Input Parameters:
1224 + dac - `DM` that defines a coarse mesh
1225 . daf - `DM` that defines a fine mesh
1226 - mat - the restriction (or interpolation operator) from fine to coarse
1227 
1228   Output Parameter:
1229 . scale - the scaled vector
1230 
1231   Level: advanced
1232 
1233   Notes:
1234   xcoarse = diag(L)*R*xfine preserves scale and is thus suitable for state (versus residual)
1235   restriction. In other words xcoarse is the coarse representation of xfine.
1236 
1237   Developer Notes:
1238   If the fine-scale `DMDA` has the -dm_bind_below option set to true, then `DMCreateInterpolationScale()` calls `MatSetBindingPropagates()`
1239   on the restriction/interpolation operator to set the bindingpropagates flag to true.
1240 
1241 .seealso: [](ch_dmbase), `DM`, `MatRestrict()`, `MatInterpolate()`, `DMCreateInterpolation()`, `DMCreateRestriction()`, `DMCreateGlobalVector()`
1242 @*/
1243 PetscErrorCode DMCreateInterpolationScale(DM dac, DM daf, Mat mat, Vec *scale)
1244 {
1245   Vec         fine;
1246   PetscScalar one = 1.0;
1247 #if defined(PETSC_HAVE_CUDA)
1248   PetscBool bindingpropagates, isbound;
1249 #endif
1250 
1251   PetscFunctionBegin;
1252   PetscCall(DMCreateGlobalVector(daf, &fine));
1253   PetscCall(DMCreateGlobalVector(dac, scale));
1254   PetscCall(VecSet(fine, one));
1255 #if defined(PETSC_HAVE_CUDA)
1256   /* If the 'fine' Vec is bound to the CPU, it makes sense to bind 'mat' as well.
1257    * Note that we only do this for the CUDA case, right now, but if we add support for MatMultTranspose() via ViennaCL,
1258    * we'll need to do it for that case, too.*/
1259   PetscCall(VecGetBindingPropagates(fine, &bindingpropagates));
1260   if (bindingpropagates) {
1261     PetscCall(MatSetBindingPropagates(mat, PETSC_TRUE));
1262     PetscCall(VecBoundToCPU(fine, &isbound));
1263     PetscCall(MatBindToCPU(mat, isbound));
1264   }
1265 #endif
1266   PetscCall(MatRestrict(mat, fine, *scale));
1267   PetscCall(VecDestroy(&fine));
1268   PetscCall(VecReciprocal(*scale));
1269   PetscFunctionReturn(PETSC_SUCCESS);
1270 }
1271 
1272 /*@
1273   DMCreateRestriction - Gets restriction matrix between two `DM` objects. The resulting matrix map degrees of freedom in the vector obtained by
1274   `DMCreateGlobalVector()` on the fine `DM` to similar vectors on the coarse grid `DM`.
1275 
1276   Collective
1277 
1278   Input Parameters:
1279 + dmc - the `DM` object
1280 - dmf - the second, finer `DM` object
1281 
1282   Output Parameter:
1283 . mat - the restriction
1284 
1285   Level: developer
1286 
1287   Note:
1288   This only works for `DMSTAG`. For many situations either the transpose of the operator obtained with `DMCreateInterpolation()` or that
1289   matrix multiplied by the vector obtained with `DMCreateInterpolationScale()` provides the desired object.
1290 
1291 .seealso: [](ch_dmbase), `DM`, `DMRestrict()`, `DMInterpolate()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMRefine()`, `DMCoarsen()`, `DMCreateInterpolation()`
1292 @*/
1293 PetscErrorCode DMCreateRestriction(DM dmc, DM dmf, Mat *mat)
1294 {
1295   PetscFunctionBegin;
1296   PetscValidHeaderSpecific(dmc, DM_CLASSID, 1);
1297   PetscValidHeaderSpecific(dmf, DM_CLASSID, 2);
1298   PetscAssertPointer(mat, 3);
1299   PetscCall(PetscLogEventBegin(DM_CreateRestriction, dmc, dmf, 0, 0));
1300   PetscUseTypeMethod(dmc, createrestriction, dmf, mat);
1301   PetscCall(PetscLogEventEnd(DM_CreateRestriction, dmc, dmf, 0, 0));
1302   PetscFunctionReturn(PETSC_SUCCESS);
1303 }
1304 
1305 /*@
1306   DMCreateInjection - Gets injection matrix between two `DM` objects.
1307 
1308   Collective
1309 
1310   Input Parameters:
1311 + dac - the `DM` object
1312 - daf - the second, finer `DM` object
1313 
1314   Output Parameter:
1315 . mat - the injection
1316 
1317   Level: developer
1318 
1319   Notes:
1320   This is an operator that applied to a vector obtained with `DMCreateGlobalVector()` on the
1321   fine grid maps the values to a vector on the vector on the coarse `DM` by simply selecting
1322   the values on the coarse grid points. This compares to the operator obtained by
1323   `DMCreateRestriction()` or the transpose of the operator obtained by
1324   `DMCreateInterpolation()` that uses a "local weighted average" of the values around the
1325   coarse grid point as the coarse grid value.
1326 
1327   For `DMDA` objects this only works for "uniform refinement", that is the refined mesh was obtained `DMRefine()` or the coarse mesh was obtained by
1328   `DMCoarsen()`. The coordinates set into the `DMDA` are completely ignored in computing the injection.
1329 
1330 .seealso: [](ch_dmbase), `DM`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMCreateInterpolation()`,
1331           `DMCreateRestriction()`, `MatRestrict()`, `MatInterpolate()`
1332 @*/
1333 PetscErrorCode DMCreateInjection(DM dac, DM daf, Mat *mat)
1334 {
1335   PetscFunctionBegin;
1336   PetscValidHeaderSpecific(dac, DM_CLASSID, 1);
1337   PetscValidHeaderSpecific(daf, DM_CLASSID, 2);
1338   PetscAssertPointer(mat, 3);
1339   PetscCall(PetscLogEventBegin(DM_CreateInjection, dac, daf, 0, 0));
1340   PetscUseTypeMethod(dac, createinjection, daf, mat);
1341   PetscCall(PetscLogEventEnd(DM_CreateInjection, dac, daf, 0, 0));
1342   PetscFunctionReturn(PETSC_SUCCESS);
1343 }
1344 
1345 /*@
1346   DMCreateMassMatrix - Gets the mass matrix between two `DM` objects, M_ij = \int \phi_i \psi_j where the \phi are Galerkin basis functions for a
1347   a Galerkin finite element model on the `DM`
1348 
1349   Collective
1350 
1351   Input Parameters:
1352 + dmc - the target `DM` object
1353 - dmf - the source `DM` object
1354 
1355   Output Parameter:
1356 . mat - the mass matrix
1357 
1358   Level: developer
1359 
1360   Notes:
1361   For `DMPLEX` the finite element model for the `DM` must have been already provided.
1362 
1363   if `dmc` is `dmf` then x^t M x is an approximation to the L2 norm of the vector x which is obtained by `DMCreateGlobalVector()`
1364 
1365 .seealso: [](ch_dmbase), `DM`, `DMCreateMassMatrixLumped()`, `DMCreateMatrix()`, `DMRefine()`, `DMCoarsen()`, `DMCreateRestriction()`, `DMCreateInterpolation()`, `DMCreateInjection()`
1366 @*/
1367 PetscErrorCode DMCreateMassMatrix(DM dmc, DM dmf, Mat *mat)
1368 {
1369   PetscFunctionBegin;
1370   PetscValidHeaderSpecific(dmc, DM_CLASSID, 1);
1371   PetscValidHeaderSpecific(dmf, DM_CLASSID, 2);
1372   PetscAssertPointer(mat, 3);
1373   PetscCall(PetscLogEventBegin(DM_CreateMassMatrix, 0, 0, 0, 0));
1374   PetscUseTypeMethod(dmc, createmassmatrix, dmf, mat);
1375   PetscCall(PetscLogEventEnd(DM_CreateMassMatrix, 0, 0, 0, 0));
1376   PetscFunctionReturn(PETSC_SUCCESS);
1377 }
1378 
1379 /*@
1380   DMCreateMassMatrixLumped - Gets the lumped mass matrix for a given `DM`
1381 
1382   Collective
1383 
1384   Input Parameter:
1385 . dm - the `DM` object
1386 
1387   Output Parameter:
1388 . lm - the lumped mass matrix, which is a diagonal matrix, represented as a vector
1389 
1390   Level: developer
1391 
1392   Note:
1393   See `DMCreateMassMatrix()` for how to create the non-lumped version of the mass matrix.
1394 
1395 .seealso: [](ch_dmbase), `DM`, `DMCreateMassMatrix()`, `DMCreateMatrix()`, `DMRefine()`, `DMCoarsen()`, `DMCreateRestriction()`, `DMCreateInterpolation()`, `DMCreateInjection()`
1396 @*/
1397 PetscErrorCode DMCreateMassMatrixLumped(DM dm, Vec *lm)
1398 {
1399   PetscFunctionBegin;
1400   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
1401   PetscAssertPointer(lm, 2);
1402   PetscUseTypeMethod(dm, createmassmatrixlumped, lm);
1403   PetscFunctionReturn(PETSC_SUCCESS);
1404 }
1405 
1406 /*@
1407   DMCreateColoring - Gets coloring of a graph associated with the `DM`. Often the graph represents the operator matrix associated with the discretization
1408   of a PDE on the `DM`.
1409 
1410   Collective
1411 
1412   Input Parameters:
1413 + dm    - the `DM` object
1414 - ctype - `IS_COLORING_LOCAL` or `IS_COLORING_GLOBAL`
1415 
1416   Output Parameter:
1417 . coloring - the coloring
1418 
1419   Level: developer
1420 
1421   Notes:
1422   Coloring of matrices can also be computed directly from the sparse matrix nonzero structure via the `MatColoring` object or from the mesh from which the
1423   matrix comes from (what this function provides). In general using the mesh produces a more optimal coloring (fewer colors).
1424 
1425   This produces a coloring with the distance of 2, see `MatSetColoringDistance()` which can be used for efficiently computing Jacobians with `MatFDColoringCreate()`
1426   For `DMDA` in three dimensions with periodic boundary conditions the number of grid points in each dimension must be divisible by 2*stencil_width + 1,
1427   otherwise an error will be generated.
1428 
1429 .seealso: [](ch_dmbase), `DM`, `ISColoring`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMSetMatType()`, `MatColoring`, `MatFDColoringCreate()`
1430 @*/
1431 PetscErrorCode DMCreateColoring(DM dm, ISColoringType ctype, ISColoring *coloring)
1432 {
1433   PetscFunctionBegin;
1434   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
1435   PetscAssertPointer(coloring, 3);
1436   PetscUseTypeMethod(dm, getcoloring, ctype, coloring);
1437   PetscFunctionReturn(PETSC_SUCCESS);
1438 }
1439 
1440 /*@
1441   DMCreateMatrix - Gets an empty matrix for a `DM` that is most commonly used to store the Jacobian of a discrete PDE operator.
1442 
1443   Collective
1444 
1445   Input Parameter:
1446 . dm - the `DM` object
1447 
1448   Output Parameter:
1449 . mat - the empty Jacobian
1450 
1451   Options Database Key:
1452 . -dm_preallocate_only - Only preallocate the matrix for `DMCreateMatrix()` and `DMCreateMassMatrix()`, but do not fill it with zeros
1453 
1454   Level: beginner
1455 
1456   Notes:
1457   This properly preallocates the number of nonzeros in the sparse matrix so you
1458   do not need to do it yourself.
1459 
1460   By default it also sets the nonzero structure and puts in the zero entries. To prevent setting
1461   the nonzero pattern call `DMSetMatrixPreallocateOnly()`
1462 
1463   For `DMDA`, when you call `MatView()` on this matrix it is displayed using the global natural ordering, NOT in the ordering used
1464   internally by PETSc.
1465 
1466   For `DMDA`, in general it is easiest to use `MatSetValuesStencil()` or `MatSetValuesLocal()` to put values into the matrix because
1467   `MatSetValues()` requires the indices for the global numbering for the `DMDA` which is complic`ated to compute
1468 
1469 .seealso: [](ch_dmbase), `DM`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMSetMatType()`, `DMCreateMassMatrix()`
1470 @*/
1471 PetscErrorCode DMCreateMatrix(DM dm, Mat *mat)
1472 {
1473   PetscFunctionBegin;
1474   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
1475   PetscAssertPointer(mat, 2);
1476   PetscCall(MatInitializePackage());
1477   PetscCall(PetscLogEventBegin(DM_CreateMatrix, 0, 0, 0, 0));
1478   PetscUseTypeMethod(dm, creatematrix, mat);
1479   if (PetscDefined(USE_DEBUG)) {
1480     DM mdm;
1481 
1482     PetscCall(MatGetDM(*mat, &mdm));
1483     PetscCheck(mdm, PETSC_COMM_SELF, PETSC_ERR_PLIB, "DM type '%s' did not attach the DM to the matrix", ((PetscObject)dm)->type_name);
1484   }
1485   /* Handle nullspace and near nullspace */
1486   if (dm->Nf) {
1487     MatNullSpace nullSpace;
1488     PetscInt     Nf, f;
1489 
1490     PetscCall(DMGetNumFields(dm, &Nf));
1491     for (f = 0; f < Nf; ++f) {
1492       if (dm->nullspaceConstructors[f]) {
1493         PetscCall((*dm->nullspaceConstructors[f])(dm, f, f, &nullSpace));
1494         PetscCall(MatSetNullSpace(*mat, nullSpace));
1495         PetscCall(MatNullSpaceDestroy(&nullSpace));
1496         break;
1497       }
1498     }
1499     for (f = 0; f < Nf; ++f) {
1500       if (dm->nearnullspaceConstructors[f]) {
1501         PetscCall((*dm->nearnullspaceConstructors[f])(dm, f, f, &nullSpace));
1502         PetscCall(MatSetNearNullSpace(*mat, nullSpace));
1503         PetscCall(MatNullSpaceDestroy(&nullSpace));
1504       }
1505     }
1506   }
1507   PetscCall(PetscLogEventEnd(DM_CreateMatrix, 0, 0, 0, 0));
1508   PetscFunctionReturn(PETSC_SUCCESS);
1509 }
1510 
1511 /*@
1512   DMSetMatrixPreallocateSkip - When `DMCreateMatrix()` is called the matrix sizes and
1513   `ISLocalToGlobalMapping` will be properly set, but the data structures to store values in the
1514   matrices will not be preallocated.
1515 
1516   Logically Collective
1517 
1518   Input Parameters:
1519 + dm   - the `DM`
1520 - skip - `PETSC_TRUE` to skip preallocation
1521 
1522   Level: developer
1523 
1524   Notes:
1525   This is most useful to reduce initialization costs when `MatSetPreallocationCOO()` and
1526   `MatSetValuesCOO()` will be used.
1527 
1528 .seealso: [](ch_dmbase), `DM`, `DMCreateMatrix()`, `DMSetMatrixStructureOnly()`, `DMSetMatrixPreallocateOnly()`
1529 @*/
1530 PetscErrorCode DMSetMatrixPreallocateSkip(DM dm, PetscBool skip)
1531 {
1532   PetscFunctionBegin;
1533   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
1534   dm->prealloc_skip = skip;
1535   PetscFunctionReturn(PETSC_SUCCESS);
1536 }
1537 
1538 /*@
1539   DMSetMatrixPreallocateOnly - When `DMCreateMatrix()` is called the matrix will be properly
1540   preallocated but the nonzero structure and zero values will not be set.
1541 
1542   Logically Collective
1543 
1544   Input Parameters:
1545 + dm   - the `DM`
1546 - only - `PETSC_TRUE` if only want preallocation
1547 
1548   Options Database Key:
1549 . -dm_preallocate_only - Only preallocate the matrix for `DMCreateMatrix()`, `DMCreateMassMatrix()`, but do not fill it with zeros
1550 
1551   Level: developer
1552 
1553 .seealso: [](ch_dmbase), `DM`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMSetMatrixStructureOnly()`, `DMSetMatrixPreallocateSkip()`
1554 @*/
1555 PetscErrorCode DMSetMatrixPreallocateOnly(DM dm, PetscBool only)
1556 {
1557   PetscFunctionBegin;
1558   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
1559   dm->prealloc_only = only;
1560   PetscFunctionReturn(PETSC_SUCCESS);
1561 }
1562 
1563 /*@
1564   DMSetMatrixStructureOnly - When `DMCreateMatrix()` is called, the matrix structure will be created
1565   but the array for numerical values will not be allocated.
1566 
1567   Logically Collective
1568 
1569   Input Parameters:
1570 + dm   - the `DM`
1571 - only - `PETSC_TRUE` if you only want matrix structure
1572 
1573   Level: developer
1574 
1575 .seealso: [](ch_dmbase), `DM`, `DMCreateMatrix()`, `DMSetMatrixPreallocateOnly()`, `DMSetMatrixPreallocateSkip()`
1576 @*/
1577 PetscErrorCode DMSetMatrixStructureOnly(DM dm, PetscBool only)
1578 {
1579   PetscFunctionBegin;
1580   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
1581   dm->structure_only = only;
1582   PetscFunctionReturn(PETSC_SUCCESS);
1583 }
1584 
1585 /*@
1586   DMSetBlockingType - set the blocking granularity to be used for variable block size `DMCreateMatrix()` is called
1587 
1588   Logically Collective
1589 
1590   Input Parameters:
1591 + dm    - the `DM`
1592 - btype - block by topological point or field node
1593 
1594   Options Database Key:
1595 . -dm_blocking_type [topological_point, field_node] - use topological point blocking or field node blocking
1596 
1597   Level: advanced
1598 
1599 .seealso: [](ch_dmbase), `DM`, `DMCreateMatrix()`, `MatSetVariableBlockSizes()`
1600 @*/
1601 PetscErrorCode DMSetBlockingType(DM dm, DMBlockingType btype)
1602 {
1603   PetscFunctionBegin;
1604   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
1605   dm->blocking_type = btype;
1606   PetscFunctionReturn(PETSC_SUCCESS);
1607 }
1608 
1609 /*@
1610   DMGetBlockingType - get the blocking granularity to be used for variable block size `DMCreateMatrix()` is called
1611 
1612   Not Collective
1613 
1614   Input Parameter:
1615 . dm - the `DM`
1616 
1617   Output Parameter:
1618 . btype - block by topological point or field node
1619 
1620   Level: advanced
1621 
1622 .seealso: [](ch_dmbase), `DM`, `DMCreateMatrix()`, `MatSetVariableBlockSizes()`
1623 @*/
1624 PetscErrorCode DMGetBlockingType(DM dm, DMBlockingType *btype)
1625 {
1626   PetscFunctionBegin;
1627   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
1628   PetscAssertPointer(btype, 2);
1629   *btype = dm->blocking_type;
1630   PetscFunctionReturn(PETSC_SUCCESS);
1631 }
1632 
1633 /*@C
1634   DMGetWorkArray - Gets a work array guaranteed to be at least the input size, restore with `DMRestoreWorkArray()`
1635 
1636   Not Collective
1637 
1638   Input Parameters:
1639 + dm    - the `DM` object
1640 . count - The minimum size
1641 - dtype - MPI data type, often `MPIU_REAL`, `MPIU_SCALAR`, or `MPIU_INT`)
1642 
1643   Output Parameter:
1644 . mem - the work array
1645 
1646   Level: developer
1647 
1648   Note:
1649   A `DM` may stash the array between instantiations so using this routine may be more efficient than calling `PetscMalloc()`
1650 
1651   The array may contain nonzero values
1652 
1653 .seealso: [](ch_dmbase), `DM`, `DMDestroy()`, `DMCreate()`, `DMRestoreWorkArray()`, `PetscMalloc()`
1654 @*/
1655 PetscErrorCode DMGetWorkArray(DM dm, PetscInt count, MPI_Datatype dtype, void *mem)
1656 {
1657   DMWorkLink  link;
1658   PetscMPIInt dsize;
1659 
1660   PetscFunctionBegin;
1661   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
1662   PetscAssertPointer(mem, 4);
1663   if (!count) {
1664     *(void **)mem = NULL;
1665     PetscFunctionReturn(PETSC_SUCCESS);
1666   }
1667   if (dm->workin) {
1668     link       = dm->workin;
1669     dm->workin = dm->workin->next;
1670   } else {
1671     PetscCall(PetscNew(&link));
1672   }
1673   /* Avoid MPI_Type_size for most used datatypes
1674      Get size directly */
1675   if (dtype == MPIU_INT) dsize = sizeof(PetscInt);
1676   else if (dtype == MPIU_REAL) dsize = sizeof(PetscReal);
1677 #if defined(PETSC_USE_64BIT_INDICES)
1678   else if (dtype == MPI_INT) dsize = sizeof(int);
1679 #endif
1680 #if defined(PETSC_USE_COMPLEX)
1681   else if (dtype == MPIU_SCALAR) dsize = sizeof(PetscScalar);
1682 #endif
1683   else PetscCallMPI(MPI_Type_size(dtype, &dsize));
1684 
1685   if (((size_t)dsize * count) > link->bytes) {
1686     PetscCall(PetscFree(link->mem));
1687     PetscCall(PetscMalloc(dsize * count, &link->mem));
1688     link->bytes = dsize * count;
1689   }
1690   link->next  = dm->workout;
1691   dm->workout = link;
1692 #if defined(__MEMCHECK_H) && (defined(PLAT_amd64_linux) || defined(PLAT_x86_linux) || defined(PLAT_amd64_darwin))
1693   VALGRIND_MAKE_MEM_NOACCESS((char *)link->mem + (size_t)dsize * count, link->bytes - (size_t)dsize * count);
1694   VALGRIND_MAKE_MEM_UNDEFINED(link->mem, (size_t)dsize * count);
1695 #endif
1696   *(void **)mem = link->mem;
1697   PetscFunctionReturn(PETSC_SUCCESS);
1698 }
1699 
1700 /*@C
1701   DMRestoreWorkArray - Restores a work array obtained with `DMCreateWorkArray()`
1702 
1703   Not Collective
1704 
1705   Input Parameters:
1706 + dm    - the `DM` object
1707 . count - The minimum size
1708 - dtype - MPI data type, often `MPIU_REAL`, `MPIU_SCALAR`, `MPIU_INT`
1709 
1710   Output Parameter:
1711 . mem - the work array
1712 
1713   Level: developer
1714 
1715   Developer Notes:
1716   count and dtype are ignored, they are only needed for `DMGetWorkArray()`
1717 
1718 .seealso: [](ch_dmbase), `DM`, `DMDestroy()`, `DMCreate()`, `DMGetWorkArray()`
1719 @*/
1720 PetscErrorCode DMRestoreWorkArray(DM dm, PetscInt count, MPI_Datatype dtype, void *mem)
1721 {
1722   DMWorkLink *p, link;
1723 
1724   PetscFunctionBegin;
1725   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
1726   PetscAssertPointer(mem, 4);
1727   (void)count;
1728   (void)dtype;
1729   if (!*(void **)mem) PetscFunctionReturn(PETSC_SUCCESS);
1730   for (p = &dm->workout; (link = *p); p = &link->next) {
1731     if (link->mem == *(void **)mem) {
1732       *p            = link->next;
1733       link->next    = dm->workin;
1734       dm->workin    = link;
1735       *(void **)mem = NULL;
1736       PetscFunctionReturn(PETSC_SUCCESS);
1737     }
1738   }
1739   SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Array was not checked out");
1740 }
1741 
1742 /*@C
1743   DMSetNullSpaceConstructor - Provide a callback function which constructs the nullspace for a given field, defined with `DMAddField()`, when function spaces
1744   are joined or split, such as in `DMCreateSubDM()`
1745 
1746   Logically Collective; No Fortran Support
1747 
1748   Input Parameters:
1749 + dm     - The `DM`
1750 . field  - The field number for the nullspace
1751 - nullsp - A callback to create the nullspace
1752 
1753   Calling sequence of `nullsp`:
1754 + dm        - The present `DM`
1755 . origField - The field number given above, in the original `DM`
1756 . field     - The field number in dm
1757 - nullSpace - The nullspace for the given field
1758 
1759   Level: intermediate
1760 
1761 .seealso: [](ch_dmbase), `DM`, `DMAddField()`, `DMGetNullSpaceConstructor()`, `DMSetNearNullSpaceConstructor()`, `DMGetNearNullSpaceConstructor()`, `DMCreateSubDM()`, `DMCreateSuperDM()`
1762 @*/
1763 PetscErrorCode DMSetNullSpaceConstructor(DM dm, PetscInt field, PetscErrorCode (*nullsp)(DM dm, PetscInt origField, PetscInt field, MatNullSpace *nullSpace))
1764 {
1765   PetscFunctionBegin;
1766   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
1767   PetscCheck(field < 10, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Cannot handle %" PetscInt_FMT " >= 10 fields", field);
1768   dm->nullspaceConstructors[field] = nullsp;
1769   PetscFunctionReturn(PETSC_SUCCESS);
1770 }
1771 
1772 /*@C
1773   DMGetNullSpaceConstructor - Return the callback function which constructs the nullspace for a given field, defined with `DMAddField()`
1774 
1775   Not Collective; No Fortran Support
1776 
1777   Input Parameters:
1778 + dm    - The `DM`
1779 - field - The field number for the nullspace
1780 
1781   Output Parameter:
1782 . nullsp - A callback to create the nullspace
1783 
1784   Calling sequence of `nullsp`:
1785 + dm        - The present DM
1786 . origField - The field number given above, in the original DM
1787 . field     - The field number in dm
1788 - nullSpace - The nullspace for the given field
1789 
1790   Level: intermediate
1791 
1792 .seealso: [](ch_dmbase), `DM`, `DMAddField()`, `DMGetField()`, `DMSetNullSpaceConstructor()`, `DMSetNearNullSpaceConstructor()`, `DMGetNearNullSpaceConstructor()`, `DMCreateSubDM()`, `DMCreateSuperDM()`
1793 @*/
1794 PetscErrorCode DMGetNullSpaceConstructor(DM dm, PetscInt field, PetscErrorCode (**nullsp)(DM dm, PetscInt origField, PetscInt field, MatNullSpace *nullSpace))
1795 {
1796   PetscFunctionBegin;
1797   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
1798   PetscAssertPointer(nullsp, 3);
1799   PetscCheck(field < 10, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Cannot handle %" PetscInt_FMT " >= 10 fields", field);
1800   *nullsp = dm->nullspaceConstructors[field];
1801   PetscFunctionReturn(PETSC_SUCCESS);
1802 }
1803 
1804 /*@C
1805   DMSetNearNullSpaceConstructor - Provide a callback function which constructs the near-nullspace for a given field, defined with `DMAddField()`
1806 
1807   Logically Collective; No Fortran Support
1808 
1809   Input Parameters:
1810 + dm     - The `DM`
1811 . field  - The field number for the nullspace
1812 - nullsp - A callback to create the near-nullspace
1813 
1814   Calling sequence of `nullsp`:
1815 + dm        - The present `DM`
1816 . origField - The field number given above, in the original `DM`
1817 . field     - The field number in dm
1818 - nullSpace - The nullspace for the given field
1819 
1820   Level: intermediate
1821 
1822 .seealso: [](ch_dmbase), `DM`, `DMAddField()`, `DMGetNearNullSpaceConstructor()`, `DMSetNullSpaceConstructor()`, `DMGetNullSpaceConstructor()`, `DMCreateSubDM()`, `DMCreateSuperDM()`,
1823           `MatNullSpace`
1824 @*/
1825 PetscErrorCode DMSetNearNullSpaceConstructor(DM dm, PetscInt field, PetscErrorCode (*nullsp)(DM dm, PetscInt origField, PetscInt field, MatNullSpace *nullSpace))
1826 {
1827   PetscFunctionBegin;
1828   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
1829   PetscCheck(field < 10, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Cannot handle %" PetscInt_FMT " >= 10 fields", field);
1830   dm->nearnullspaceConstructors[field] = nullsp;
1831   PetscFunctionReturn(PETSC_SUCCESS);
1832 }
1833 
1834 /*@C
1835   DMGetNearNullSpaceConstructor - Return the callback function which constructs the near-nullspace for a given field, defined with `DMAddField()`
1836 
1837   Not Collective; No Fortran Support
1838 
1839   Input Parameters:
1840 + dm    - The `DM`
1841 - field - The field number for the nullspace
1842 
1843   Output Parameter:
1844 . nullsp - A callback to create the near-nullspace
1845 
1846   Calling sequence of `nullsp`:
1847 + dm        - The present `DM`
1848 . origField - The field number given above, in the original `DM`
1849 . field     - The field number in dm
1850 - nullSpace - The nullspace for the given field
1851 
1852   Level: intermediate
1853 
1854 .seealso: [](ch_dmbase), `DM`, `DMAddField()`, `DMGetField()`, `DMSetNearNullSpaceConstructor()`, `DMSetNullSpaceConstructor()`, `DMGetNullSpaceConstructor()`, `DMCreateSubDM()`,
1855           `MatNullSpace`, `DMCreateSuperDM()`
1856 @*/
1857 PetscErrorCode DMGetNearNullSpaceConstructor(DM dm, PetscInt field, PetscErrorCode (**nullsp)(DM dm, PetscInt origField, PetscInt field, MatNullSpace *nullSpace))
1858 {
1859   PetscFunctionBegin;
1860   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
1861   PetscAssertPointer(nullsp, 3);
1862   PetscCheck(field < 10, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Cannot handle %" PetscInt_FMT " >= 10 fields", field);
1863   *nullsp = dm->nearnullspaceConstructors[field];
1864   PetscFunctionReturn(PETSC_SUCCESS);
1865 }
1866 
1867 /*@C
1868   DMCreateFieldIS - Creates a set of `IS` objects with the global indices of dofs for each field defined with `DMAddField()`
1869 
1870   Not Collective; No Fortran Support
1871 
1872   Input Parameter:
1873 . dm - the `DM` object
1874 
1875   Output Parameters:
1876 + numFields  - The number of fields (or `NULL` if not requested)
1877 . fieldNames - The number of each field (or `NULL` if not requested)
1878 - fields     - The global indices for each field (or `NULL` if not requested)
1879 
1880   Level: intermediate
1881 
1882   Note:
1883   The user is responsible for freeing all requested arrays. In particular, every entry of names should be freed with
1884   `PetscFree()`, every entry of fields should be destroyed with `ISDestroy()`, and both arrays should be freed with
1885   `PetscFree()`.
1886 
1887   Developer Notes:
1888   It is not clear why both this function and `DMCreateFieldDecomposition()` exist. Having two seems redundant and confusing. This function should
1889   likely be removed.
1890 
1891 .seealso: [](ch_dmbase), `DM`, `DMAddField()`, `DMGetField()`, `DMDestroy()`, `DMView()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`,
1892           `DMCreateFieldDecomposition()`
1893 @*/
1894 PetscErrorCode DMCreateFieldIS(DM dm, PetscInt *numFields, char ***fieldNames, IS **fields)
1895 {
1896   PetscSection section, sectionGlobal;
1897 
1898   PetscFunctionBegin;
1899   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
1900   if (numFields) {
1901     PetscAssertPointer(numFields, 2);
1902     *numFields = 0;
1903   }
1904   if (fieldNames) {
1905     PetscAssertPointer(fieldNames, 3);
1906     *fieldNames = NULL;
1907   }
1908   if (fields) {
1909     PetscAssertPointer(fields, 4);
1910     *fields = NULL;
1911   }
1912   PetscCall(DMGetLocalSection(dm, &section));
1913   if (section) {
1914     PetscInt *fieldSizes, *fieldNc, **fieldIndices;
1915     PetscInt  nF, f, pStart, pEnd, p;
1916 
1917     PetscCall(DMGetGlobalSection(dm, &sectionGlobal));
1918     PetscCall(PetscSectionGetNumFields(section, &nF));
1919     PetscCall(PetscMalloc3(nF, &fieldSizes, nF, &fieldNc, nF, &fieldIndices));
1920     PetscCall(PetscSectionGetChart(sectionGlobal, &pStart, &pEnd));
1921     for (f = 0; f < nF; ++f) {
1922       fieldSizes[f] = 0;
1923       PetscCall(PetscSectionGetFieldComponents(section, f, &fieldNc[f]));
1924     }
1925     for (p = pStart; p < pEnd; ++p) {
1926       PetscInt gdof;
1927 
1928       PetscCall(PetscSectionGetDof(sectionGlobal, p, &gdof));
1929       if (gdof > 0) {
1930         for (f = 0; f < nF; ++f) {
1931           PetscInt fdof, fcdof, fpdof;
1932 
1933           PetscCall(PetscSectionGetFieldDof(section, p, f, &fdof));
1934           PetscCall(PetscSectionGetFieldConstraintDof(section, p, f, &fcdof));
1935           fpdof = fdof - fcdof;
1936           if (fpdof && fpdof != fieldNc[f]) {
1937             /* Layout does not admit a pointwise block size */
1938             fieldNc[f] = 1;
1939           }
1940           fieldSizes[f] += fpdof;
1941         }
1942       }
1943     }
1944     for (f = 0; f < nF; ++f) {
1945       PetscCall(PetscMalloc1(fieldSizes[f], &fieldIndices[f]));
1946       fieldSizes[f] = 0;
1947     }
1948     for (p = pStart; p < pEnd; ++p) {
1949       PetscInt gdof, goff;
1950 
1951       PetscCall(PetscSectionGetDof(sectionGlobal, p, &gdof));
1952       if (gdof > 0) {
1953         PetscCall(PetscSectionGetOffset(sectionGlobal, p, &goff));
1954         for (f = 0; f < nF; ++f) {
1955           PetscInt fdof, fcdof, fc;
1956 
1957           PetscCall(PetscSectionGetFieldDof(section, p, f, &fdof));
1958           PetscCall(PetscSectionGetFieldConstraintDof(section, p, f, &fcdof));
1959           for (fc = 0; fc < fdof - fcdof; ++fc, ++fieldSizes[f]) fieldIndices[f][fieldSizes[f]] = goff++;
1960         }
1961       }
1962     }
1963     if (numFields) *numFields = nF;
1964     if (fieldNames) {
1965       PetscCall(PetscMalloc1(nF, fieldNames));
1966       for (f = 0; f < nF; ++f) {
1967         const char *fieldName;
1968 
1969         PetscCall(PetscSectionGetFieldName(section, f, &fieldName));
1970         PetscCall(PetscStrallocpy(fieldName, (char **)&(*fieldNames)[f]));
1971       }
1972     }
1973     if (fields) {
1974       PetscCall(PetscMalloc1(nF, fields));
1975       for (f = 0; f < nF; ++f) {
1976         PetscInt bs, in[2], out[2];
1977 
1978         PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)dm), fieldSizes[f], fieldIndices[f], PETSC_OWN_POINTER, &(*fields)[f]));
1979         in[0] = -fieldNc[f];
1980         in[1] = fieldNc[f];
1981         PetscCall(MPIU_Allreduce(in, out, 2, MPIU_INT, MPI_MAX, PetscObjectComm((PetscObject)dm)));
1982         bs = (-out[0] == out[1]) ? out[1] : 1;
1983         PetscCall(ISSetBlockSize((*fields)[f], bs));
1984       }
1985     }
1986     PetscCall(PetscFree3(fieldSizes, fieldNc, fieldIndices));
1987   } else PetscTryTypeMethod(dm, createfieldis, numFields, fieldNames, fields);
1988   PetscFunctionReturn(PETSC_SUCCESS);
1989 }
1990 
1991 /*@C
1992   DMCreateFieldDecomposition - Returns a list of `IS` objects defining a decomposition of a problem into subproblems
1993   corresponding to different fields.
1994 
1995   Not Collective; No Fortran Support
1996 
1997   Input Parameter:
1998 . dm - the `DM` object
1999 
2000   Output Parameters:
2001 + len      - The number of fields (or `NULL` if not requested)
2002 . namelist - The name for each field (or `NULL` if not requested)
2003 . islist   - The global indices for each field (or `NULL` if not requested)
2004 - dmlist   - The `DM`s for each field subproblem (or `NULL`, if not requested; if `NULL` is returned, no `DM`s are defined)
2005 
2006   Level: intermediate
2007 
2008   Notes:
2009   Each `IS` contains the global indices of the dofs of the corresponding field, defined by
2010   `DMAddField()`. The optional list of `DM`s define the `DM` for each subproblem.
2011 
2012   The same as `DMCreateFieldIS()` but also returns a `DM` for each field.
2013 
2014   The user is responsible for freeing all requested arrays. In particular, every entry of names should be freed with
2015   `PetscFree()`, every entry of is should be destroyed with `ISDestroy()`, every entry of dm should be destroyed with `DMDestroy()`,
2016   and all of the arrays should be freed with `PetscFree()`.
2017 
2018   Developer Notes:
2019   It is not clear why this function and `DMCreateFieldIS()` exist. Having two seems redundant and confusing.
2020 
2021 .seealso: [](ch_dmbase), `DM`, `DMAddField()`, `DMCreateFieldIS()`, `DMCreateSubDM()`, `DMCreateDomainDecomposition()`, `DMDestroy()`, `DMView()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`
2022 @*/
2023 PetscErrorCode DMCreateFieldDecomposition(DM dm, PetscInt *len, char ***namelist, IS **islist, DM **dmlist)
2024 {
2025   PetscFunctionBegin;
2026   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
2027   if (len) {
2028     PetscAssertPointer(len, 2);
2029     *len = 0;
2030   }
2031   if (namelist) {
2032     PetscAssertPointer(namelist, 3);
2033     *namelist = NULL;
2034   }
2035   if (islist) {
2036     PetscAssertPointer(islist, 4);
2037     *islist = NULL;
2038   }
2039   if (dmlist) {
2040     PetscAssertPointer(dmlist, 5);
2041     *dmlist = NULL;
2042   }
2043   /*
2044    Is it a good idea to apply the following check across all impls?
2045    Perhaps some impls can have a well-defined decomposition before DMSetUp?
2046    This, however, follows the general principle that accessors are not well-behaved until the object is set up.
2047    */
2048   PetscCheck(dm->setupcalled, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONGSTATE, "Decomposition defined only after DMSetUp");
2049   if (!dm->ops->createfielddecomposition) {
2050     PetscSection section;
2051     PetscInt     numFields, f;
2052 
2053     PetscCall(DMGetLocalSection(dm, &section));
2054     if (section) PetscCall(PetscSectionGetNumFields(section, &numFields));
2055     if (section && numFields && dm->ops->createsubdm) {
2056       if (len) *len = numFields;
2057       if (namelist) PetscCall(PetscMalloc1(numFields, namelist));
2058       if (islist) PetscCall(PetscMalloc1(numFields, islist));
2059       if (dmlist) PetscCall(PetscMalloc1(numFields, dmlist));
2060       for (f = 0; f < numFields; ++f) {
2061         const char *fieldName;
2062 
2063         PetscCall(DMCreateSubDM(dm, 1, &f, islist ? &(*islist)[f] : NULL, dmlist ? &(*dmlist)[f] : NULL));
2064         if (namelist) {
2065           PetscCall(PetscSectionGetFieldName(section, f, &fieldName));
2066           PetscCall(PetscStrallocpy(fieldName, (char **)&(*namelist)[f]));
2067         }
2068       }
2069     } else {
2070       PetscCall(DMCreateFieldIS(dm, len, namelist, islist));
2071       /* By default there are no DMs associated with subproblems. */
2072       if (dmlist) *dmlist = NULL;
2073     }
2074   } else PetscUseTypeMethod(dm, createfielddecomposition, len, namelist, islist, dmlist);
2075   PetscFunctionReturn(PETSC_SUCCESS);
2076 }
2077 
2078 /*@C
2079   DMCreateSubDM - Returns an `IS` and `DM` encapsulating a subproblem defined by the fields passed in.
2080   The fields are defined by `DMCreateFieldIS()`.
2081 
2082   Not collective
2083 
2084   Input Parameters:
2085 + dm        - The `DM` object
2086 . numFields - The number of fields to select
2087 - fields    - The field numbers of the selected fields
2088 
2089   Output Parameters:
2090 + is    - The global indices for all the degrees of freedom in the new sub `DM`
2091 - subdm - The `DM` for the subproblem
2092 
2093   Level: intermediate
2094 
2095   Note:
2096   You need to call `DMPlexSetMigrationSF()` on the original `DM` if you want the Global-To-Natural map to be automatically constructed
2097 
2098 .seealso: [](ch_dmbase), `DM`, `DMCreateFieldIS()`, `DMCreateFieldDecomposition()`, `DMAddField()`, `DMCreateSuperDM()`, `IS`, `DMPlexSetMigrationSF()`, `DMDestroy()`, `DMView()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`
2099 @*/
2100 PetscErrorCode DMCreateSubDM(DM dm, PetscInt numFields, const PetscInt fields[], IS *is, DM *subdm)
2101 {
2102   PetscFunctionBegin;
2103   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
2104   PetscAssertPointer(fields, 3);
2105   if (is) PetscAssertPointer(is, 4);
2106   if (subdm) PetscAssertPointer(subdm, 5);
2107   PetscUseTypeMethod(dm, createsubdm, numFields, fields, is, subdm);
2108   PetscFunctionReturn(PETSC_SUCCESS);
2109 }
2110 
2111 /*@C
2112   DMCreateSuperDM - Returns an arrays of `IS` and `DM` encapsulating a superproblem defined by multiple `DM`s passed in.
2113 
2114   Not collective
2115 
2116   Input Parameters:
2117 + dms - The `DM` objects
2118 - n   - The number of `DM`s
2119 
2120   Output Parameters:
2121 + is      - The global indices for each of subproblem within the super `DM`, or NULL
2122 - superdm - The `DM` for the superproblem
2123 
2124   Level: intermediate
2125 
2126   Note:
2127   You need to call `DMPlexSetMigrationSF()` on the original `DM` if you want the Global-To-Natural map to be automatically constructed
2128 
2129 .seealso: [](ch_dmbase), `DM`, `DMCreateSubDM()`, `DMPlexSetMigrationSF()`, `DMDestroy()`, `DMView()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMCreateFieldIS()`
2130 @*/
2131 PetscErrorCode DMCreateSuperDM(DM dms[], PetscInt n, IS **is, DM *superdm)
2132 {
2133   PetscInt i;
2134 
2135   PetscFunctionBegin;
2136   PetscAssertPointer(dms, 1);
2137   for (i = 0; i < n; ++i) PetscValidHeaderSpecific(dms[i], DM_CLASSID, 1);
2138   if (is) PetscAssertPointer(is, 3);
2139   PetscAssertPointer(superdm, 4);
2140   PetscCheck(n >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Number of DMs must be nonnegative: %" PetscInt_FMT, n);
2141   if (n) {
2142     DM dm = dms[0];
2143     PetscCheck(dm->ops->createsuperdm, PetscObjectComm((PetscObject)dm), PETSC_ERR_SUP, "No method createsuperdm for DM of type %s\n", ((PetscObject)dm)->type_name);
2144     PetscCall((*dm->ops->createsuperdm)(dms, n, is, superdm));
2145   }
2146   PetscFunctionReturn(PETSC_SUCCESS);
2147 }
2148 
2149 /*@C
2150   DMCreateDomainDecomposition - Returns lists of `IS` objects defining a decomposition of a
2151   problem into subproblems corresponding to restrictions to pairs of nested subdomains.
2152 
2153   Not Collective
2154 
2155   Input Parameter:
2156 . dm - the `DM` object
2157 
2158   Output Parameters:
2159 + n           - The number of subproblems in the domain decomposition (or `NULL` if not requested)
2160 . namelist    - The name for each subdomain (or `NULL` if not requested)
2161 . innerislist - The global indices for each inner subdomain (or NULL, if not requested)
2162 . outerislist - The global indices for each outer subdomain (or NULL, if not requested)
2163 - dmlist      - The `DM`s for each subdomain subproblem (or NULL, if not requested; if `NULL` is returned, no `DM`s are defined)
2164 
2165   Level: intermediate
2166 
2167   Note:
2168   Each `IS` contains the global indices of the dofs of the corresponding subdomains with in the
2169   dofs of the original `DM`. The inner subdomains conceptually define a nonoverlapping
2170   covering, while outer subdomains can overlap.
2171 
2172   The optional list of `DM`s define a `DM` for each subproblem.
2173 
2174   The user is responsible for freeing all requested arrays. In particular, every entry of names should be freed with
2175   `PetscFree()`, every entry of is should be destroyed with `ISDestroy()`, every entry of dm should be destroyed with `DMDestroy()`,
2176   and all of the arrays should be freed with `PetscFree()`.
2177 
2178   Developer Notes:
2179   The `dmlist` is for the inner subdomains or the outer subdomains or all subdomains?
2180 
2181 .seealso: [](ch_dmbase), `DM`, `DMCreateFieldDecomposition()`, `DMDestroy()`, `DMCreateDomainDecompositionScatters()`, `DMView()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`
2182 @*/
2183 PetscErrorCode DMCreateDomainDecomposition(DM dm, PetscInt *n, char ***namelist, IS **innerislist, IS **outerislist, DM **dmlist)
2184 {
2185   DMSubDomainHookLink link;
2186   PetscInt            i, l;
2187 
2188   PetscFunctionBegin;
2189   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
2190   if (n) {
2191     PetscAssertPointer(n, 2);
2192     *n = 0;
2193   }
2194   if (namelist) {
2195     PetscAssertPointer(namelist, 3);
2196     *namelist = NULL;
2197   }
2198   if (innerislist) {
2199     PetscAssertPointer(innerislist, 4);
2200     *innerislist = NULL;
2201   }
2202   if (outerislist) {
2203     PetscAssertPointer(outerislist, 5);
2204     *outerislist = NULL;
2205   }
2206   if (dmlist) {
2207     PetscAssertPointer(dmlist, 6);
2208     *dmlist = NULL;
2209   }
2210   /*
2211    Is it a good idea to apply the following check across all impls?
2212    Perhaps some impls can have a well-defined decomposition before DMSetUp?
2213    This, however, follows the general principle that accessors are not well-behaved until the object is set up.
2214    */
2215   PetscCheck(dm->setupcalled, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONGSTATE, "Decomposition defined only after DMSetUp");
2216   if (dm->ops->createdomaindecomposition) {
2217     PetscUseTypeMethod(dm, createdomaindecomposition, &l, namelist, innerislist, outerislist, dmlist);
2218     /* copy subdomain hooks and context over to the subdomain DMs */
2219     if (dmlist && *dmlist) {
2220       for (i = 0; i < l; i++) {
2221         for (link = dm->subdomainhook; link; link = link->next) {
2222           if (link->ddhook) PetscCall((*link->ddhook)(dm, (*dmlist)[i], link->ctx));
2223         }
2224         if (dm->ctx) (*dmlist)[i]->ctx = dm->ctx;
2225       }
2226     }
2227     if (n) *n = l;
2228   }
2229   PetscFunctionReturn(PETSC_SUCCESS);
2230 }
2231 
2232 /*@C
2233   DMCreateDomainDecompositionScatters - Returns scatters to the subdomain vectors from the global vector
2234 
2235   Not Collective
2236 
2237   Input Parameters:
2238 + dm     - the `DM` object
2239 . n      - the number of subdomain scatters
2240 - subdms - the local subdomains
2241 
2242   Output Parameters:
2243 + iscat - scatter from global vector to nonoverlapping global vector entries on subdomain
2244 . oscat - scatter from global vector to overlapping global vector entries on subdomain
2245 - gscat - scatter from global vector to local vector on subdomain (fills in ghosts)
2246 
2247   Level: developer
2248 
2249   Note:
2250   This is an alternative to the iis and ois arguments in `DMCreateDomainDecomposition()` that allow for the solution
2251   of general nonlinear problems with overlapping subdomain methods.  While merely having index sets that enable subsets
2252   of the residual equations to be created is fine for linear problems, nonlinear problems require local assembly of
2253   solution and residual data.
2254 
2255   Developer Notes:
2256   Can the subdms input be anything or are they exactly the `DM` obtained from
2257   `DMCreateDomainDecomposition()`?
2258 
2259 .seealso: [](ch_dmbase), `DM`, `DMCreateDomainDecomposition()`, `DMDestroy()`, `DMView()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMCreateFieldIS()`
2260 @*/
2261 PetscErrorCode DMCreateDomainDecompositionScatters(DM dm, PetscInt n, DM *subdms, VecScatter **iscat, VecScatter **oscat, VecScatter **gscat)
2262 {
2263   PetscFunctionBegin;
2264   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
2265   PetscAssertPointer(subdms, 3);
2266   PetscUseTypeMethod(dm, createddscatters, n, subdms, iscat, oscat, gscat);
2267   PetscFunctionReturn(PETSC_SUCCESS);
2268 }
2269 
2270 /*@
2271   DMRefine - Refines a `DM` object using a standard nonadaptive refinement of the underlying mesh
2272 
2273   Collective
2274 
2275   Input Parameters:
2276 + dm   - the `DM` object
2277 - comm - the communicator to contain the new `DM` object (or `MPI_COMM_NULL`)
2278 
2279   Output Parameter:
2280 . dmf - the refined `DM`, or `NULL`
2281 
2282   Options Database Key:
2283 . -dm_plex_cell_refiner <strategy> - chooses the refinement strategy, e.g. regular, tohex
2284 
2285   Level: developer
2286 
2287   Note:
2288   If no refinement was done, the return value is `NULL`
2289 
2290 .seealso: [](ch_dmbase), `DM`, `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`
2291 @*/
2292 PetscErrorCode DMRefine(DM dm, MPI_Comm comm, DM *dmf)
2293 {
2294   DMRefineHookLink link;
2295 
2296   PetscFunctionBegin;
2297   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
2298   PetscCall(PetscLogEventBegin(DM_Refine, dm, 0, 0, 0));
2299   PetscUseTypeMethod(dm, refine, comm, dmf);
2300   if (*dmf) {
2301     (*dmf)->ops->creatematrix = dm->ops->creatematrix;
2302 
2303     PetscCall(PetscObjectCopyFortranFunctionPointers((PetscObject)dm, (PetscObject)*dmf));
2304 
2305     (*dmf)->ctx       = dm->ctx;
2306     (*dmf)->leveldown = dm->leveldown;
2307     (*dmf)->levelup   = dm->levelup + 1;
2308 
2309     PetscCall(DMSetMatType(*dmf, dm->mattype));
2310     for (link = dm->refinehook; link; link = link->next) {
2311       if (link->refinehook) PetscCall((*link->refinehook)(dm, *dmf, link->ctx));
2312     }
2313   }
2314   PetscCall(PetscLogEventEnd(DM_Refine, dm, 0, 0, 0));
2315   PetscFunctionReturn(PETSC_SUCCESS);
2316 }
2317 
2318 /*@C
2319   DMRefineHookAdd - adds a callback to be run when interpolating a nonlinear problem to a finer grid
2320 
2321   Logically Collective; No Fortran Support
2322 
2323   Input Parameters:
2324 + coarse     - `DM` on which to run a hook when interpolating to a finer level
2325 . refinehook - function to run when setting up the finer level
2326 . interphook - function to run to update data on finer levels (once per `SNESSolve()`)
2327 - ctx        - [optional] user-defined context for provide data for the hooks (may be `NULL`)
2328 
2329   Calling sequence of `refinehook`:
2330 + coarse - coarse level `DM`
2331 . fine   - fine level `DM` to interpolate problem to
2332 - ctx    - optional user-defined function context
2333 
2334   Calling sequence of `interphook`:
2335 + coarse - coarse level `DM`
2336 . interp - matrix interpolating a coarse-level solution to the finer grid
2337 . fine   - fine level `DM` to update
2338 - ctx    - optional user-defined function context
2339 
2340   Level: advanced
2341 
2342   Notes:
2343   This function is only needed if auxiliary data that is attached to the `DM`s via, for example, `PetscObjectCompose()`, needs to be
2344   passed to fine grids while grid sequencing.
2345 
2346   The actual interpolation is done when `DMInterpolate()` is called.
2347 
2348   If this function is called multiple times, the hooks will be run in the order they are added.
2349 
2350 .seealso: [](ch_dmbase), `DM`, `DMCoarsenHookAdd()`, `DMInterpolate()`, `SNESFASGetInterpolation()`, `SNESFASGetInjection()`, `PetscObjectCompose()`, `PetscContainerCreate()`
2351 @*/
2352 PetscErrorCode DMRefineHookAdd(DM coarse, PetscErrorCode (*refinehook)(DM coarse, DM fine, void *ctx), PetscErrorCode (*interphook)(DM coarse, Mat interp, DM fine, void *ctx), void *ctx)
2353 {
2354   DMRefineHookLink link, *p;
2355 
2356   PetscFunctionBegin;
2357   PetscValidHeaderSpecific(coarse, DM_CLASSID, 1);
2358   for (p = &coarse->refinehook; *p; p = &(*p)->next) { /* Scan to the end of the current list of hooks */
2359     if ((*p)->refinehook == refinehook && (*p)->interphook == interphook && (*p)->ctx == ctx) PetscFunctionReturn(PETSC_SUCCESS);
2360   }
2361   PetscCall(PetscNew(&link));
2362   link->refinehook = refinehook;
2363   link->interphook = interphook;
2364   link->ctx        = ctx;
2365   link->next       = NULL;
2366   *p               = link;
2367   PetscFunctionReturn(PETSC_SUCCESS);
2368 }
2369 
2370 /*@C
2371   DMRefineHookRemove - remove a callback from the list of hooks, that have been set with `DMRefineHookAdd()`, to be run when interpolating
2372   a nonlinear problem to a finer grid
2373 
2374   Logically Collective; No Fortran Support
2375 
2376   Input Parameters:
2377 + coarse     - the `DM` on which to run a hook when restricting to a coarser level
2378 . refinehook - function to run when setting up a finer level
2379 . interphook - function to run to update data on finer levels
2380 - ctx        - [optional] user-defined context for provide data for the hooks (may be `NULL`)
2381 
2382   Level: advanced
2383 
2384   Note:
2385   This function does nothing if the hook is not in the list.
2386 
2387 .seealso: [](ch_dmbase), `DM`, `DMRefineHookAdd()`, `DMCoarsenHookRemove()`, `DMInterpolate()`, `SNESFASGetInterpolation()`, `SNESFASGetInjection()`, `PetscObjectCompose()`, `PetscContainerCreate()`
2388 @*/
2389 PetscErrorCode DMRefineHookRemove(DM coarse, PetscErrorCode (*refinehook)(DM, DM, void *), PetscErrorCode (*interphook)(DM, Mat, DM, void *), void *ctx)
2390 {
2391   DMRefineHookLink link, *p;
2392 
2393   PetscFunctionBegin;
2394   PetscValidHeaderSpecific(coarse, DM_CLASSID, 1);
2395   for (p = &coarse->refinehook; *p; p = &(*p)->next) { /* Search the list of current hooks */
2396     if ((*p)->refinehook == refinehook && (*p)->interphook == interphook && (*p)->ctx == ctx) {
2397       link = *p;
2398       *p   = link->next;
2399       PetscCall(PetscFree(link));
2400       break;
2401     }
2402   }
2403   PetscFunctionReturn(PETSC_SUCCESS);
2404 }
2405 
2406 /*@
2407   DMInterpolate - interpolates user-defined problem data attached to a `DM` to a finer `DM` by running hooks registered by `DMRefineHookAdd()`
2408 
2409   Collective if any hooks are
2410 
2411   Input Parameters:
2412 + coarse - coarser `DM` to use as a base
2413 . interp - interpolation matrix, apply using `MatInterpolate()`
2414 - fine   - finer `DM` to update
2415 
2416   Level: developer
2417 
2418   Developer Notes:
2419   This routine is called `DMInterpolate()` while the hook is called `DMRefineHookAdd()`. It would be better to have an
2420   an API with consistent terminology.
2421 
2422 .seealso: [](ch_dmbase), `DM`, `DMRefineHookAdd()`, `MatInterpolate()`
2423 @*/
2424 PetscErrorCode DMInterpolate(DM coarse, Mat interp, DM fine)
2425 {
2426   DMRefineHookLink link;
2427 
2428   PetscFunctionBegin;
2429   for (link = fine->refinehook; link; link = link->next) {
2430     if (link->interphook) PetscCall((*link->interphook)(coarse, interp, fine, link->ctx));
2431   }
2432   PetscFunctionReturn(PETSC_SUCCESS);
2433 }
2434 
2435 /*@
2436   DMInterpolateSolution - Interpolates a solution from a coarse mesh to a fine mesh.
2437 
2438   Collective
2439 
2440   Input Parameters:
2441 + coarse    - coarse `DM`
2442 . fine      - fine `DM`
2443 . interp    - (optional) the matrix computed by `DMCreateInterpolation()`.  Implementations may not need this, but if it
2444             is available it can avoid some recomputation.  If it is provided, `MatInterpolate()` will be used if
2445             the coarse `DM` does not have a specialized implementation.
2446 - coarseSol - solution on the coarse mesh
2447 
2448   Output Parameter:
2449 . fineSol - the interpolation of coarseSol to the fine mesh
2450 
2451   Level: developer
2452 
2453   Note:
2454   This function exists because the interpolation of a solution vector between meshes is not always a linear
2455   map.  For example, if a boundary value problem has an inhomogeneous Dirichlet boundary condition that is compressed
2456   out of the solution vector.  Or if interpolation is inherently a nonlinear operation, such as a method using
2457   slope-limiting reconstruction.
2458 
2459   Developer Notes:
2460   This doesn't just interpolate "solutions" so its API name is questionable.
2461 
2462 .seealso: [](ch_dmbase), `DM`, `DMInterpolate()`, `DMCreateInterpolation()`
2463 @*/
2464 PetscErrorCode DMInterpolateSolution(DM coarse, DM fine, Mat interp, Vec coarseSol, Vec fineSol)
2465 {
2466   PetscErrorCode (*interpsol)(DM, DM, Mat, Vec, Vec) = NULL;
2467 
2468   PetscFunctionBegin;
2469   PetscValidHeaderSpecific(coarse, DM_CLASSID, 1);
2470   if (interp) PetscValidHeaderSpecific(interp, MAT_CLASSID, 3);
2471   PetscValidHeaderSpecific(coarseSol, VEC_CLASSID, 4);
2472   PetscValidHeaderSpecific(fineSol, VEC_CLASSID, 5);
2473 
2474   PetscCall(PetscObjectQueryFunction((PetscObject)coarse, "DMInterpolateSolution_C", &interpsol));
2475   if (interpsol) {
2476     PetscCall((*interpsol)(coarse, fine, interp, coarseSol, fineSol));
2477   } else if (interp) {
2478     PetscCall(MatInterpolate(interp, coarseSol, fineSol));
2479   } else SETERRQ(PetscObjectComm((PetscObject)coarse), PETSC_ERR_SUP, "DM %s does not implement DMInterpolateSolution()", ((PetscObject)coarse)->type_name);
2480   PetscFunctionReturn(PETSC_SUCCESS);
2481 }
2482 
2483 /*@
2484   DMGetRefineLevel - Gets the number of refinements that have generated this `DM` from some initial `DM`.
2485 
2486   Not Collective
2487 
2488   Input Parameter:
2489 . dm - the `DM` object
2490 
2491   Output Parameter:
2492 . level - number of refinements
2493 
2494   Level: developer
2495 
2496   Note:
2497   This can be used, by example, to set the number of coarser levels associated with this `DM` for a multigrid solver.
2498 
2499 .seealso: [](ch_dmbase), `DM`, `DMRefine()`, `DMCoarsen()`, `DMGetCoarsenLevel()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`
2500 @*/
2501 PetscErrorCode DMGetRefineLevel(DM dm, PetscInt *level)
2502 {
2503   PetscFunctionBegin;
2504   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
2505   *level = dm->levelup;
2506   PetscFunctionReturn(PETSC_SUCCESS);
2507 }
2508 
2509 /*@
2510   DMSetRefineLevel - Sets the number of refinements that have generated this `DM`.
2511 
2512   Not Collective
2513 
2514   Input Parameters:
2515 + dm    - the `DM` object
2516 - level - number of refinements
2517 
2518   Level: advanced
2519 
2520   Notes:
2521   This value is used by `PCMG` to determine how many multigrid levels to use
2522 
2523   The values are usually set automatically by the process that is causing the refinements of an initial `DM` by calling this routine.
2524 
2525 .seealso: [](ch_dmbase), `DM`, `DMGetRefineLevel()`, `DMCoarsen()`, `DMGetCoarsenLevel()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`
2526 @*/
2527 PetscErrorCode DMSetRefineLevel(DM dm, PetscInt level)
2528 {
2529   PetscFunctionBegin;
2530   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
2531   dm->levelup = level;
2532   PetscFunctionReturn(PETSC_SUCCESS);
2533 }
2534 
2535 /*@
2536   DMExtrude - Extrude a `DM` object from a surface
2537 
2538   Collective
2539 
2540   Input Parameters:
2541 + dm     - the `DM` object
2542 - layers - the number of extruded cell layers
2543 
2544   Output Parameter:
2545 . dme - the extruded `DM`, or `NULL`
2546 
2547   Level: developer
2548 
2549   Note:
2550   If no extrusion was done, the return value is `NULL`
2551 
2552 .seealso: [](ch_dmbase), `DM`, `DMRefine()`, `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`
2553 @*/
2554 PetscErrorCode DMExtrude(DM dm, PetscInt layers, DM *dme)
2555 {
2556   PetscFunctionBegin;
2557   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
2558   PetscUseTypeMethod(dm, extrude, layers, dme);
2559   if (*dme) {
2560     (*dme)->ops->creatematrix = dm->ops->creatematrix;
2561     PetscCall(PetscObjectCopyFortranFunctionPointers((PetscObject)dm, (PetscObject)*dme));
2562     (*dme)->ctx = dm->ctx;
2563     PetscCall(DMSetMatType(*dme, dm->mattype));
2564   }
2565   PetscFunctionReturn(PETSC_SUCCESS);
2566 }
2567 
2568 PetscErrorCode DMGetBasisTransformDM_Internal(DM dm, DM *tdm)
2569 {
2570   PetscFunctionBegin;
2571   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
2572   PetscAssertPointer(tdm, 2);
2573   *tdm = dm->transformDM;
2574   PetscFunctionReturn(PETSC_SUCCESS);
2575 }
2576 
2577 PetscErrorCode DMGetBasisTransformVec_Internal(DM dm, Vec *tv)
2578 {
2579   PetscFunctionBegin;
2580   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
2581   PetscAssertPointer(tv, 2);
2582   *tv = dm->transform;
2583   PetscFunctionReturn(PETSC_SUCCESS);
2584 }
2585 
2586 /*@
2587   DMHasBasisTransform - Whether the `DM` employs a basis transformation from functions in global vectors to functions in local vectors
2588 
2589   Input Parameter:
2590 . dm - The `DM`
2591 
2592   Output Parameter:
2593 . flg - `PETSC_TRUE` if a basis transformation should be done
2594 
2595   Level: developer
2596 
2597 .seealso: [](ch_dmbase), `DM`, `DMPlexGlobalToLocalBasis()`, `DMPlexLocalToGlobalBasis()`, `DMPlexCreateBasisRotation()`
2598 @*/
2599 PetscErrorCode DMHasBasisTransform(DM dm, PetscBool *flg)
2600 {
2601   Vec tv;
2602 
2603   PetscFunctionBegin;
2604   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
2605   PetscAssertPointer(flg, 2);
2606   PetscCall(DMGetBasisTransformVec_Internal(dm, &tv));
2607   *flg = tv ? PETSC_TRUE : PETSC_FALSE;
2608   PetscFunctionReturn(PETSC_SUCCESS);
2609 }
2610 
2611 PetscErrorCode DMConstructBasisTransform_Internal(DM dm)
2612 {
2613   PetscSection s, ts;
2614   PetscScalar *ta;
2615   PetscInt     cdim, pStart, pEnd, p, Nf, f, Nc, dof;
2616 
2617   PetscFunctionBegin;
2618   PetscCall(DMGetCoordinateDim(dm, &cdim));
2619   PetscCall(DMGetLocalSection(dm, &s));
2620   PetscCall(PetscSectionGetChart(s, &pStart, &pEnd));
2621   PetscCall(PetscSectionGetNumFields(s, &Nf));
2622   PetscCall(DMClone(dm, &dm->transformDM));
2623   PetscCall(DMGetLocalSection(dm->transformDM, &ts));
2624   PetscCall(PetscSectionSetNumFields(ts, Nf));
2625   PetscCall(PetscSectionSetChart(ts, pStart, pEnd));
2626   for (f = 0; f < Nf; ++f) {
2627     PetscCall(PetscSectionGetFieldComponents(s, f, &Nc));
2628     /* We could start to label fields by their transformation properties */
2629     if (Nc != cdim) continue;
2630     for (p = pStart; p < pEnd; ++p) {
2631       PetscCall(PetscSectionGetFieldDof(s, p, f, &dof));
2632       if (!dof) continue;
2633       PetscCall(PetscSectionSetFieldDof(ts, p, f, PetscSqr(cdim)));
2634       PetscCall(PetscSectionAddDof(ts, p, PetscSqr(cdim)));
2635     }
2636   }
2637   PetscCall(PetscSectionSetUp(ts));
2638   PetscCall(DMCreateLocalVector(dm->transformDM, &dm->transform));
2639   PetscCall(VecGetArray(dm->transform, &ta));
2640   for (p = pStart; p < pEnd; ++p) {
2641     for (f = 0; f < Nf; ++f) {
2642       PetscCall(PetscSectionGetFieldDof(ts, p, f, &dof));
2643       if (dof) {
2644         PetscReal          x[3] = {0.0, 0.0, 0.0};
2645         PetscScalar       *tva;
2646         const PetscScalar *A;
2647 
2648         /* TODO Get quadrature point for this dual basis vector for coordinate */
2649         PetscCall((*dm->transformGetMatrix)(dm, x, PETSC_TRUE, &A, dm->transformCtx));
2650         PetscCall(DMPlexPointLocalFieldRef(dm->transformDM, p, f, ta, (void *)&tva));
2651         PetscCall(PetscArraycpy(tva, A, PetscSqr(cdim)));
2652       }
2653     }
2654   }
2655   PetscCall(VecRestoreArray(dm->transform, &ta));
2656   PetscFunctionReturn(PETSC_SUCCESS);
2657 }
2658 
2659 PetscErrorCode DMCopyTransform(DM dm, DM newdm)
2660 {
2661   PetscFunctionBegin;
2662   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
2663   PetscValidHeaderSpecific(newdm, DM_CLASSID, 2);
2664   newdm->transformCtx       = dm->transformCtx;
2665   newdm->transformSetUp     = dm->transformSetUp;
2666   newdm->transformDestroy   = NULL;
2667   newdm->transformGetMatrix = dm->transformGetMatrix;
2668   if (newdm->transformSetUp) PetscCall(DMConstructBasisTransform_Internal(newdm));
2669   PetscFunctionReturn(PETSC_SUCCESS);
2670 }
2671 
2672 /*@C
2673   DMGlobalToLocalHookAdd - adds a callback to be run when `DMGlobalToLocal()` is called
2674 
2675   Logically Collective
2676 
2677   Input Parameters:
2678 + dm        - the `DM`
2679 . beginhook - function to run at the beginning of `DMGlobalToLocalBegin()`
2680 . endhook   - function to run after `DMGlobalToLocalEnd()` has completed
2681 - ctx       - [optional] user-defined context for provide data for the hooks (may be `NULL`)
2682 
2683   Calling sequence of `beginhook`:
2684 + dm   - global `DM`
2685 . g    - global vector
2686 . mode - mode
2687 . l    - local vector
2688 - ctx  - optional user-defined function context
2689 
2690   Calling sequence of `endhook`:
2691 + dm   - global `DM`
2692 . g    - global vector
2693 . mode - mode
2694 . l    - local vector
2695 - ctx  - optional user-defined function context
2696 
2697   Level: advanced
2698 
2699   Note:
2700   The hook may be used to provide, for example, values that represent boundary conditions in the local vectors that do not exist on the global vector.
2701 
2702 .seealso: [](ch_dmbase), `DM`, `DMGlobalToLocal()`, `DMRefineHookAdd()`, `SNESFASGetInterpolation()`, `SNESFASGetInjection()`, `PetscObjectCompose()`, `PetscContainerCreate()`
2703 @*/
2704 PetscErrorCode DMGlobalToLocalHookAdd(DM dm, PetscErrorCode (*beginhook)(DM dm, Vec g, InsertMode mode, Vec l, void *ctx), PetscErrorCode (*endhook)(DM dm, Vec g, InsertMode mode, Vec l, void *ctx), void *ctx)
2705 {
2706   DMGlobalToLocalHookLink link, *p;
2707 
2708   PetscFunctionBegin;
2709   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
2710   for (p = &dm->gtolhook; *p; p = &(*p)->next) { } /* Scan to the end of the current list of hooks */
2711   PetscCall(PetscNew(&link));
2712   link->beginhook = beginhook;
2713   link->endhook   = endhook;
2714   link->ctx       = ctx;
2715   link->next      = NULL;
2716   *p              = link;
2717   PetscFunctionReturn(PETSC_SUCCESS);
2718 }
2719 
2720 static PetscErrorCode DMGlobalToLocalHook_Constraints(DM dm, Vec g, InsertMode mode, Vec l, void *ctx)
2721 {
2722   Mat          cMat;
2723   Vec          cVec, cBias;
2724   PetscSection section, cSec;
2725   PetscInt     pStart, pEnd, p, dof;
2726 
2727   PetscFunctionBegin;
2728   (void)g;
2729   (void)ctx;
2730   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
2731   PetscCall(DMGetDefaultConstraints(dm, &cSec, &cMat, &cBias));
2732   if (cMat && (mode == INSERT_VALUES || mode == INSERT_ALL_VALUES || mode == INSERT_BC_VALUES)) {
2733     PetscInt nRows;
2734 
2735     PetscCall(MatGetSize(cMat, &nRows, NULL));
2736     if (nRows <= 0) PetscFunctionReturn(PETSC_SUCCESS);
2737     PetscCall(DMGetLocalSection(dm, &section));
2738     PetscCall(MatCreateVecs(cMat, NULL, &cVec));
2739     PetscCall(MatMult(cMat, l, cVec));
2740     if (cBias) PetscCall(VecAXPY(cVec, 1., cBias));
2741     PetscCall(PetscSectionGetChart(cSec, &pStart, &pEnd));
2742     for (p = pStart; p < pEnd; p++) {
2743       PetscCall(PetscSectionGetDof(cSec, p, &dof));
2744       if (dof) {
2745         PetscScalar *vals;
2746         PetscCall(VecGetValuesSection(cVec, cSec, p, &vals));
2747         PetscCall(VecSetValuesSection(l, section, p, vals, INSERT_ALL_VALUES));
2748       }
2749     }
2750     PetscCall(VecDestroy(&cVec));
2751   }
2752   PetscFunctionReturn(PETSC_SUCCESS);
2753 }
2754 
2755 /*@
2756   DMGlobalToLocal - update local vectors from global vector
2757 
2758   Neighbor-wise Collective
2759 
2760   Input Parameters:
2761 + dm   - the `DM` object
2762 . g    - the global vector
2763 . mode - `INSERT_VALUES` or `ADD_VALUES`
2764 - l    - the local vector
2765 
2766   Level: beginner
2767 
2768   Notes:
2769   The communication involved in this update can be overlapped with computation by instead using
2770   `DMGlobalToLocalBegin()` and `DMGlobalToLocalEnd()`.
2771 
2772   `DMGlobalToLocalHookAdd()` may be used to provide additional operations that are performed during the update process.
2773 
2774 .seealso: [](ch_dmbase), `DM`, `DMGlobalToLocalHookAdd()`, `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`,
2775           `DMGlobalToLocalEnd()`, `DMLocalToGlobalBegin()`, `DMLocalToGlobal()`, `DMLocalToGlobalEnd()`,
2776           `DMGlobalToLocalBegin()` `DMGlobalToLocalEnd()`
2777 @*/
2778 PetscErrorCode DMGlobalToLocal(DM dm, Vec g, InsertMode mode, Vec l)
2779 {
2780   PetscFunctionBegin;
2781   PetscCall(DMGlobalToLocalBegin(dm, g, mode, l));
2782   PetscCall(DMGlobalToLocalEnd(dm, g, mode, l));
2783   PetscFunctionReturn(PETSC_SUCCESS);
2784 }
2785 
2786 /*@
2787   DMGlobalToLocalBegin - Begins updating local vectors from global vector
2788 
2789   Neighbor-wise Collective
2790 
2791   Input Parameters:
2792 + dm   - the `DM` object
2793 . g    - the global vector
2794 . mode - `INSERT_VALUES` or `ADD_VALUES`
2795 - l    - the local vector
2796 
2797   Level: intermediate
2798 
2799   Notes:
2800   The operation is completed with `DMGlobalToLocalEnd()`
2801 
2802   One can perform local computations between the `DMGlobalToLocalBegin()` and  `DMGlobalToLocalEnd()` to overlap communication and computation
2803 
2804   `DMGlobalToLocal()` is a short form of  `DMGlobalToLocalBegin()` and  `DMGlobalToLocalEnd()`
2805 
2806   `DMGlobalToLocalHookAdd()` may be used to provide additional operations that are performed during the update process.
2807 
2808 .seealso: [](ch_dmbase), `DM`, `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMGlobalToLocal()`, `DMGlobalToLocalEnd()`, `DMLocalToGlobalBegin()`, `DMLocalToGlobal()`, `DMLocalToGlobalEnd()`
2809 @*/
2810 PetscErrorCode DMGlobalToLocalBegin(DM dm, Vec g, InsertMode mode, Vec l)
2811 {
2812   PetscSF                 sf;
2813   DMGlobalToLocalHookLink link;
2814 
2815   PetscFunctionBegin;
2816   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
2817   for (link = dm->gtolhook; link; link = link->next) {
2818     if (link->beginhook) PetscCall((*link->beginhook)(dm, g, mode, l, link->ctx));
2819   }
2820   PetscCall(DMGetSectionSF(dm, &sf));
2821   if (sf) {
2822     const PetscScalar *gArray;
2823     PetscScalar       *lArray;
2824     PetscMemType       lmtype, gmtype;
2825 
2826     PetscCheck(mode != ADD_VALUES, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Invalid insertion mode %d", (int)mode);
2827     PetscCall(VecGetArrayAndMemType(l, &lArray, &lmtype));
2828     PetscCall(VecGetArrayReadAndMemType(g, &gArray, &gmtype));
2829     PetscCall(PetscSFBcastWithMemTypeBegin(sf, MPIU_SCALAR, gmtype, gArray, lmtype, lArray, MPI_REPLACE));
2830     PetscCall(VecRestoreArrayAndMemType(l, &lArray));
2831     PetscCall(VecRestoreArrayReadAndMemType(g, &gArray));
2832   } else {
2833     PetscUseTypeMethod(dm, globaltolocalbegin, g, mode == INSERT_ALL_VALUES ? INSERT_VALUES : (mode == ADD_ALL_VALUES ? ADD_VALUES : mode), l);
2834   }
2835   PetscFunctionReturn(PETSC_SUCCESS);
2836 }
2837 
2838 /*@
2839   DMGlobalToLocalEnd - Ends updating local vectors from global vector
2840 
2841   Neighbor-wise Collective
2842 
2843   Input Parameters:
2844 + dm   - the `DM` object
2845 . g    - the global vector
2846 . mode - `INSERT_VALUES` or `ADD_VALUES`
2847 - l    - the local vector
2848 
2849   Level: intermediate
2850 
2851   Note:
2852   See `DMGlobalToLocalBegin()` for details.
2853 
2854 .seealso: [](ch_dmbase), `DM`, `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMGlobalToLocal()`, `DMLocalToGlobalBegin()`, `DMLocalToGlobal()`, `DMLocalToGlobalEnd()`
2855 @*/
2856 PetscErrorCode DMGlobalToLocalEnd(DM dm, Vec g, InsertMode mode, Vec l)
2857 {
2858   PetscSF                 sf;
2859   const PetscScalar      *gArray;
2860   PetscScalar            *lArray;
2861   PetscBool               transform;
2862   DMGlobalToLocalHookLink link;
2863   PetscMemType            lmtype, gmtype;
2864 
2865   PetscFunctionBegin;
2866   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
2867   PetscCall(DMGetSectionSF(dm, &sf));
2868   PetscCall(DMHasBasisTransform(dm, &transform));
2869   if (sf) {
2870     PetscCheck(mode != ADD_VALUES, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Invalid insertion mode %d", (int)mode);
2871 
2872     PetscCall(VecGetArrayAndMemType(l, &lArray, &lmtype));
2873     PetscCall(VecGetArrayReadAndMemType(g, &gArray, &gmtype));
2874     PetscCall(PetscSFBcastEnd(sf, MPIU_SCALAR, gArray, lArray, MPI_REPLACE));
2875     PetscCall(VecRestoreArrayAndMemType(l, &lArray));
2876     PetscCall(VecRestoreArrayReadAndMemType(g, &gArray));
2877     if (transform) PetscCall(DMPlexGlobalToLocalBasis(dm, l));
2878   } else {
2879     PetscUseTypeMethod(dm, globaltolocalend, g, mode == INSERT_ALL_VALUES ? INSERT_VALUES : (mode == ADD_ALL_VALUES ? ADD_VALUES : mode), l);
2880   }
2881   PetscCall(DMGlobalToLocalHook_Constraints(dm, g, mode, l, NULL));
2882   for (link = dm->gtolhook; link; link = link->next) {
2883     if (link->endhook) PetscCall((*link->endhook)(dm, g, mode, l, link->ctx));
2884   }
2885   PetscFunctionReturn(PETSC_SUCCESS);
2886 }
2887 
2888 /*@C
2889   DMLocalToGlobalHookAdd - adds a callback to be run when a local to global is called
2890 
2891   Logically Collective
2892 
2893   Input Parameters:
2894 + dm        - the `DM`
2895 . beginhook - function to run at the beginning of `DMLocalToGlobalBegin()`
2896 . endhook   - function to run after `DMLocalToGlobalEnd()` has completed
2897 - ctx       - [optional] user-defined context for provide data for the hooks (may be `NULL`)
2898 
2899   Calling sequence of `beginhook`:
2900 + global - global `DM`
2901 . l      - local vector
2902 . mode   - mode
2903 . g      - global vector
2904 - ctx    - optional user-defined function context
2905 
2906   Calling sequence of `endhook`:
2907 + global - global `DM`
2908 . l      - local vector
2909 . mode   - mode
2910 . g      - global vector
2911 - ctx    - optional user-defined function context
2912 
2913   Level: advanced
2914 
2915 .seealso: [](ch_dmbase), `DM`, `DMLocalToGlobal()`, `DMRefineHookAdd()`, `DMGlobalToLocalHookAdd()`, `SNESFASGetInterpolation()`, `SNESFASGetInjection()`, `PetscObjectCompose()`, `PetscContainerCreate()`
2916 @*/
2917 PetscErrorCode DMLocalToGlobalHookAdd(DM dm, PetscErrorCode (*beginhook)(DM global, Vec l, InsertMode mode, Vec g, void *ctx), PetscErrorCode (*endhook)(DM global, Vec l, InsertMode mode, Vec g, void *ctx), void *ctx)
2918 {
2919   DMLocalToGlobalHookLink link, *p;
2920 
2921   PetscFunctionBegin;
2922   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
2923   for (p = &dm->ltoghook; *p; p = &(*p)->next) { } /* Scan to the end of the current list of hooks */
2924   PetscCall(PetscNew(&link));
2925   link->beginhook = beginhook;
2926   link->endhook   = endhook;
2927   link->ctx       = ctx;
2928   link->next      = NULL;
2929   *p              = link;
2930   PetscFunctionReturn(PETSC_SUCCESS);
2931 }
2932 
2933 static PetscErrorCode DMLocalToGlobalHook_Constraints(DM dm, Vec l, InsertMode mode, Vec g, void *ctx)
2934 {
2935   Mat          cMat;
2936   Vec          cVec;
2937   PetscSection section, cSec;
2938   PetscInt     pStart, pEnd, p, dof;
2939 
2940   PetscFunctionBegin;
2941   (void)g;
2942   (void)ctx;
2943   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
2944   PetscCall(DMGetDefaultConstraints(dm, &cSec, &cMat, NULL));
2945   if (cMat && (mode == ADD_VALUES || mode == ADD_ALL_VALUES || mode == ADD_BC_VALUES)) {
2946     PetscInt nRows;
2947 
2948     PetscCall(MatGetSize(cMat, &nRows, NULL));
2949     if (nRows <= 0) PetscFunctionReturn(PETSC_SUCCESS);
2950     PetscCall(DMGetLocalSection(dm, &section));
2951     PetscCall(MatCreateVecs(cMat, NULL, &cVec));
2952     PetscCall(PetscSectionGetChart(cSec, &pStart, &pEnd));
2953     for (p = pStart; p < pEnd; p++) {
2954       PetscCall(PetscSectionGetDof(cSec, p, &dof));
2955       if (dof) {
2956         PetscInt     d;
2957         PetscScalar *vals;
2958         PetscCall(VecGetValuesSection(l, section, p, &vals));
2959         PetscCall(VecSetValuesSection(cVec, cSec, p, vals, mode));
2960         /* for this to be the true transpose, we have to zero the values that
2961          * we just extracted */
2962         for (d = 0; d < dof; d++) vals[d] = 0.;
2963       }
2964     }
2965     PetscCall(MatMultTransposeAdd(cMat, cVec, l, l));
2966     PetscCall(VecDestroy(&cVec));
2967   }
2968   PetscFunctionReturn(PETSC_SUCCESS);
2969 }
2970 /*@
2971   DMLocalToGlobal - updates global vectors from local vectors
2972 
2973   Neighbor-wise Collective
2974 
2975   Input Parameters:
2976 + dm   - the `DM` object
2977 . l    - the local vector
2978 . mode - if `INSERT_VALUES` then no parallel communication is used, if `ADD_VALUES` then all ghost points from the same base point accumulate into that base point.
2979 - g    - the global vector
2980 
2981   Level: beginner
2982 
2983   Notes:
2984   The communication involved in this update can be overlapped with computation by using
2985   `DMLocalToGlobalBegin()` and `DMLocalToGlobalEnd()`.
2986 
2987   In the `ADD_VALUES` case you normally would zero the receiving vector before beginning this operation.
2988 
2989   `INSERT_VALUES` is not supported for `DMDA`; in that case simply compute the values directly into a global vector instead of a local one.
2990 
2991   Use `DMLocalToGlobalHookAdd()` to add additional operations that are performed on the data during the update process
2992 
2993 .seealso: [](ch_dmbase), `DM`, `DMLocalToGlobalBegin()`, `DMLocalToGlobalEnd()`, `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMGlobalToLocal()`, `DMGlobalToLocalEnd()`, `DMGlobalToLocalBegin()`, `DMLocalToGlobalHookAdd()`, `DMGlobaToLocallHookAdd()`
2994 @*/
2995 PetscErrorCode DMLocalToGlobal(DM dm, Vec l, InsertMode mode, Vec g)
2996 {
2997   PetscFunctionBegin;
2998   PetscCall(DMLocalToGlobalBegin(dm, l, mode, g));
2999   PetscCall(DMLocalToGlobalEnd(dm, l, mode, g));
3000   PetscFunctionReturn(PETSC_SUCCESS);
3001 }
3002 
3003 /*@
3004   DMLocalToGlobalBegin - begins updating global vectors from local vectors
3005 
3006   Neighbor-wise Collective
3007 
3008   Input Parameters:
3009 + dm   - the `DM` object
3010 . l    - the local vector
3011 . mode - if `INSERT_VALUES` then no parallel communication is used, if `ADD_VALUES` then all ghost points from the same base point accumulate into that base point.
3012 - g    - the global vector
3013 
3014   Level: intermediate
3015 
3016   Notes:
3017   In the `ADD_VALUES` case you normally would zero the receiving vector before beginning this operation.
3018 
3019   `INSERT_VALUES is` not supported for `DMDA`, in that case simply compute the values directly into a global vector instead of a local one.
3020 
3021   Use `DMLocalToGlobalEnd()` to complete the communication process.
3022 
3023   `DMLocalToGlobal()` is a short form of  `DMLocalToGlobalBegin()` and  `DMLocalToGlobalEnd()`
3024 
3025   `DMLocalToGlobalHookAdd()` may be used to provide additional operations that are performed during the update process.
3026 
3027 .seealso: [](ch_dmbase), `DM`, `DMLocalToGlobal()`, `DMLocalToGlobalEnd()`, `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMGlobalToLocal()`, `DMGlobalToLocalEnd()`, `DMGlobalToLocalBegin()`
3028 @*/
3029 PetscErrorCode DMLocalToGlobalBegin(DM dm, Vec l, InsertMode mode, Vec g)
3030 {
3031   PetscSF                 sf;
3032   PetscSection            s, gs;
3033   DMLocalToGlobalHookLink link;
3034   Vec                     tmpl;
3035   const PetscScalar      *lArray;
3036   PetscScalar            *gArray;
3037   PetscBool               isInsert, transform, l_inplace = PETSC_FALSE, g_inplace = PETSC_FALSE;
3038   PetscMemType            lmtype = PETSC_MEMTYPE_HOST, gmtype = PETSC_MEMTYPE_HOST;
3039 
3040   PetscFunctionBegin;
3041   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
3042   for (link = dm->ltoghook; link; link = link->next) {
3043     if (link->beginhook) PetscCall((*link->beginhook)(dm, l, mode, g, link->ctx));
3044   }
3045   PetscCall(DMLocalToGlobalHook_Constraints(dm, l, mode, g, NULL));
3046   PetscCall(DMGetSectionSF(dm, &sf));
3047   PetscCall(DMGetLocalSection(dm, &s));
3048   switch (mode) {
3049   case INSERT_VALUES:
3050   case INSERT_ALL_VALUES:
3051   case INSERT_BC_VALUES:
3052     isInsert = PETSC_TRUE;
3053     break;
3054   case ADD_VALUES:
3055   case ADD_ALL_VALUES:
3056   case ADD_BC_VALUES:
3057     isInsert = PETSC_FALSE;
3058     break;
3059   default:
3060     SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Invalid insertion mode %d", mode);
3061   }
3062   if ((sf && !isInsert) || (s && isInsert)) {
3063     PetscCall(DMHasBasisTransform(dm, &transform));
3064     if (transform) {
3065       PetscCall(DMGetNamedLocalVector(dm, "__petsc_dm_transform_local_copy", &tmpl));
3066       PetscCall(VecCopy(l, tmpl));
3067       PetscCall(DMPlexLocalToGlobalBasis(dm, tmpl));
3068       PetscCall(VecGetArrayRead(tmpl, &lArray));
3069     } else if (isInsert) {
3070       PetscCall(VecGetArrayRead(l, &lArray));
3071     } else {
3072       PetscCall(VecGetArrayReadAndMemType(l, &lArray, &lmtype));
3073       l_inplace = PETSC_TRUE;
3074     }
3075     if (s && isInsert) {
3076       PetscCall(VecGetArray(g, &gArray));
3077     } else {
3078       PetscCall(VecGetArrayAndMemType(g, &gArray, &gmtype));
3079       g_inplace = PETSC_TRUE;
3080     }
3081     if (sf && !isInsert) {
3082       PetscCall(PetscSFReduceWithMemTypeBegin(sf, MPIU_SCALAR, lmtype, lArray, gmtype, gArray, MPIU_SUM));
3083     } else if (s && isInsert) {
3084       PetscInt gStart, pStart, pEnd, p;
3085 
3086       PetscCall(DMGetGlobalSection(dm, &gs));
3087       PetscCall(PetscSectionGetChart(s, &pStart, &pEnd));
3088       PetscCall(VecGetOwnershipRange(g, &gStart, NULL));
3089       for (p = pStart; p < pEnd; ++p) {
3090         PetscInt dof, gdof, cdof, gcdof, off, goff, d, e;
3091 
3092         PetscCall(PetscSectionGetDof(s, p, &dof));
3093         PetscCall(PetscSectionGetDof(gs, p, &gdof));
3094         PetscCall(PetscSectionGetConstraintDof(s, p, &cdof));
3095         PetscCall(PetscSectionGetConstraintDof(gs, p, &gcdof));
3096         PetscCall(PetscSectionGetOffset(s, p, &off));
3097         PetscCall(PetscSectionGetOffset(gs, p, &goff));
3098         /* Ignore off-process data and points with no global data */
3099         if (!gdof || goff < 0) continue;
3100         PetscCheck(dof == gdof, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Inconsistent sizes, p: %" PetscInt_FMT " dof: %" PetscInt_FMT " gdof: %" PetscInt_FMT " cdof: %" PetscInt_FMT " gcdof: %" PetscInt_FMT, p, dof, gdof, cdof, gcdof);
3101         /* If no constraints are enforced in the global vector */
3102         if (!gcdof) {
3103           for (d = 0; d < dof; ++d) gArray[goff - gStart + d] = lArray[off + d];
3104           /* If constraints are enforced in the global vector */
3105         } else if (cdof == gcdof) {
3106           const PetscInt *cdofs;
3107           PetscInt        cind = 0;
3108 
3109           PetscCall(PetscSectionGetConstraintIndices(s, p, &cdofs));
3110           for (d = 0, e = 0; d < dof; ++d) {
3111             if ((cind < cdof) && (d == cdofs[cind])) {
3112               ++cind;
3113               continue;
3114             }
3115             gArray[goff - gStart + e++] = lArray[off + d];
3116           }
3117         } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Inconsistent sizes, p: %" PetscInt_FMT " dof: %" PetscInt_FMT " gdof: %" PetscInt_FMT " cdof: %" PetscInt_FMT " gcdof: %" PetscInt_FMT, p, dof, gdof, cdof, gcdof);
3118       }
3119     }
3120     if (g_inplace) {
3121       PetscCall(VecRestoreArrayAndMemType(g, &gArray));
3122     } else {
3123       PetscCall(VecRestoreArray(g, &gArray));
3124     }
3125     if (transform) {
3126       PetscCall(VecRestoreArrayRead(tmpl, &lArray));
3127       PetscCall(DMRestoreNamedLocalVector(dm, "__petsc_dm_transform_local_copy", &tmpl));
3128     } else if (l_inplace) {
3129       PetscCall(VecRestoreArrayReadAndMemType(l, &lArray));
3130     } else {
3131       PetscCall(VecRestoreArrayRead(l, &lArray));
3132     }
3133   } else {
3134     PetscUseTypeMethod(dm, localtoglobalbegin, l, mode == INSERT_ALL_VALUES ? INSERT_VALUES : (mode == ADD_ALL_VALUES ? ADD_VALUES : mode), g);
3135   }
3136   PetscFunctionReturn(PETSC_SUCCESS);
3137 }
3138 
3139 /*@
3140   DMLocalToGlobalEnd - updates global vectors from local vectors
3141 
3142   Neighbor-wise Collective
3143 
3144   Input Parameters:
3145 + dm   - the `DM` object
3146 . l    - the local vector
3147 . mode - `INSERT_VALUES` or `ADD_VALUES`
3148 - g    - the global vector
3149 
3150   Level: intermediate
3151 
3152   Note:
3153   See `DMLocalToGlobalBegin()` for full details
3154 
3155 .seealso: [](ch_dmbase), `DM`, `DMLocalToGlobalBegin()`, `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMGlobalToLocalEnd()`
3156 @*/
3157 PetscErrorCode DMLocalToGlobalEnd(DM dm, Vec l, InsertMode mode, Vec g)
3158 {
3159   PetscSF                 sf;
3160   PetscSection            s;
3161   DMLocalToGlobalHookLink link;
3162   PetscBool               isInsert, transform;
3163 
3164   PetscFunctionBegin;
3165   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
3166   PetscCall(DMGetSectionSF(dm, &sf));
3167   PetscCall(DMGetLocalSection(dm, &s));
3168   switch (mode) {
3169   case INSERT_VALUES:
3170   case INSERT_ALL_VALUES:
3171     isInsert = PETSC_TRUE;
3172     break;
3173   case ADD_VALUES:
3174   case ADD_ALL_VALUES:
3175     isInsert = PETSC_FALSE;
3176     break;
3177   default:
3178     SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Invalid insertion mode %d", mode);
3179   }
3180   if (sf && !isInsert) {
3181     const PetscScalar *lArray;
3182     PetscScalar       *gArray;
3183     Vec                tmpl;
3184 
3185     PetscCall(DMHasBasisTransform(dm, &transform));
3186     if (transform) {
3187       PetscCall(DMGetNamedLocalVector(dm, "__petsc_dm_transform_local_copy", &tmpl));
3188       PetscCall(VecGetArrayRead(tmpl, &lArray));
3189     } else {
3190       PetscCall(VecGetArrayReadAndMemType(l, &lArray, NULL));
3191     }
3192     PetscCall(VecGetArrayAndMemType(g, &gArray, NULL));
3193     PetscCall(PetscSFReduceEnd(sf, MPIU_SCALAR, lArray, gArray, MPIU_SUM));
3194     if (transform) {
3195       PetscCall(VecRestoreArrayRead(tmpl, &lArray));
3196       PetscCall(DMRestoreNamedLocalVector(dm, "__petsc_dm_transform_local_copy", &tmpl));
3197     } else {
3198       PetscCall(VecRestoreArrayReadAndMemType(l, &lArray));
3199     }
3200     PetscCall(VecRestoreArrayAndMemType(g, &gArray));
3201   } else if (s && isInsert) {
3202   } else {
3203     PetscUseTypeMethod(dm, localtoglobalend, l, mode == INSERT_ALL_VALUES ? INSERT_VALUES : (mode == ADD_ALL_VALUES ? ADD_VALUES : mode), g);
3204   }
3205   for (link = dm->ltoghook; link; link = link->next) {
3206     if (link->endhook) PetscCall((*link->endhook)(dm, g, mode, l, link->ctx));
3207   }
3208   PetscFunctionReturn(PETSC_SUCCESS);
3209 }
3210 
3211 /*@
3212   DMLocalToLocalBegin - Begins the process of mapping values from a local vector (that include
3213   ghost points that contain irrelevant values) to another local vector where the ghost points
3214   in the second are set correctly from values on other MPI ranks.
3215 
3216   Neighbor-wise Collective
3217 
3218   Input Parameters:
3219 + dm   - the `DM` object
3220 . g    - the original local vector
3221 - mode - one of `INSERT_VALUES` or `ADD_VALUES`
3222 
3223   Output Parameter:
3224 . l - the local vector with correct ghost values
3225 
3226   Level: intermediate
3227 
3228   Notes:
3229   Must be followed by `DMLocalToLocalEnd()`.
3230 
3231 .seealso: [](ch_dmbase), `DM`, `DMLocalToLocalEnd()`, `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateLocalVector()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMGlobalToLocalEnd()`, `DMLocalToGlobalBegin()`
3232 @*/
3233 PetscErrorCode DMLocalToLocalBegin(DM dm, Vec g, InsertMode mode, Vec l)
3234 {
3235   PetscFunctionBegin;
3236   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
3237   PetscValidHeaderSpecific(g, VEC_CLASSID, 2);
3238   PetscValidHeaderSpecific(l, VEC_CLASSID, 4);
3239   PetscUseTypeMethod(dm, localtolocalbegin, g, mode == INSERT_ALL_VALUES ? INSERT_VALUES : (mode == ADD_ALL_VALUES ? ADD_VALUES : mode), l);
3240   PetscFunctionReturn(PETSC_SUCCESS);
3241 }
3242 
3243 /*@
3244   DMLocalToLocalEnd - Maps from a local vector to another local vector where the ghost
3245   points in the second are set correctly. Must be preceded by `DMLocalToLocalBegin()`.
3246 
3247   Neighbor-wise Collective
3248 
3249   Input Parameters:
3250 + dm   - the `DM` object
3251 . g    - the original local vector
3252 - mode - one of `INSERT_VALUES` or `ADD_VALUES`
3253 
3254   Output Parameter:
3255 . l - the local vector with correct ghost values
3256 
3257   Level: intermediate
3258 
3259 .seealso: [](ch_dmbase), `DM`, `DMLocalToLocalBegin()`, `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateLocalVector()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMGlobalToLocalEnd()`, `DMLocalToGlobalBegin()`
3260 @*/
3261 PetscErrorCode DMLocalToLocalEnd(DM dm, Vec g, InsertMode mode, Vec l)
3262 {
3263   PetscFunctionBegin;
3264   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
3265   PetscValidHeaderSpecific(g, VEC_CLASSID, 2);
3266   PetscValidHeaderSpecific(l, VEC_CLASSID, 4);
3267   PetscUseTypeMethod(dm, localtolocalend, g, mode == INSERT_ALL_VALUES ? INSERT_VALUES : (mode == ADD_ALL_VALUES ? ADD_VALUES : mode), l);
3268   PetscFunctionReturn(PETSC_SUCCESS);
3269 }
3270 
3271 /*@
3272   DMCoarsen - Coarsens a `DM` object using a standard, non-adaptive coarsening of the underlying mesh
3273 
3274   Collective
3275 
3276   Input Parameters:
3277 + dm   - the `DM` object
3278 - comm - the communicator to contain the new `DM` object (or `MPI_COMM_NULL`)
3279 
3280   Output Parameter:
3281 . dmc - the coarsened `DM`
3282 
3283   Level: developer
3284 
3285 .seealso: [](ch_dmbase), `DM`, `DMRefine()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`
3286 @*/
3287 PetscErrorCode DMCoarsen(DM dm, MPI_Comm comm, DM *dmc)
3288 {
3289   DMCoarsenHookLink link;
3290 
3291   PetscFunctionBegin;
3292   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
3293   PetscCall(PetscLogEventBegin(DM_Coarsen, dm, 0, 0, 0));
3294   PetscUseTypeMethod(dm, coarsen, comm, dmc);
3295   if (*dmc) {
3296     (*dmc)->bind_below = dm->bind_below; /* Propagate this from parent DM; otherwise -dm_bind_below will be useless for multigrid cases. */
3297     PetscCall(DMSetCoarseDM(dm, *dmc));
3298     (*dmc)->ops->creatematrix = dm->ops->creatematrix;
3299     PetscCall(PetscObjectCopyFortranFunctionPointers((PetscObject)dm, (PetscObject)*dmc));
3300     (*dmc)->ctx       = dm->ctx;
3301     (*dmc)->levelup   = dm->levelup;
3302     (*dmc)->leveldown = dm->leveldown + 1;
3303     PetscCall(DMSetMatType(*dmc, dm->mattype));
3304     for (link = dm->coarsenhook; link; link = link->next) {
3305       if (link->coarsenhook) PetscCall((*link->coarsenhook)(dm, *dmc, link->ctx));
3306     }
3307   }
3308   PetscCall(PetscLogEventEnd(DM_Coarsen, dm, 0, 0, 0));
3309   PetscCheck(*dmc, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "NULL coarse mesh produced");
3310   PetscFunctionReturn(PETSC_SUCCESS);
3311 }
3312 
3313 /*@C
3314   DMCoarsenHookAdd - adds a callback to be run when restricting a nonlinear problem to the coarse grid
3315 
3316   Logically Collective; No Fortran Support
3317 
3318   Input Parameters:
3319 + fine         - `DM` on which to run a hook when restricting to a coarser level
3320 . coarsenhook  - function to run when setting up a coarser level
3321 . restricthook - function to run to update data on coarser levels (called once per `SNESSolve()`)
3322 - ctx          - [optional] user-defined context for provide data for the hooks (may be `NULL`)
3323 
3324   Calling sequence of `coarsenhook`:
3325 + fine   - fine level `DM`
3326 . coarse - coarse level `DM` to restrict problem to
3327 - ctx    - optional user-defined function context
3328 
3329   Calling sequence of `restricthook`:
3330 + fine      - fine level `DM`
3331 . mrestrict - matrix restricting a fine-level solution to the coarse grid, usually the transpose of the interpolation
3332 . rscale    - scaling vector for restriction
3333 . inject    - matrix restricting by injection
3334 . coarse    - coarse level DM to update
3335 - ctx       - optional user-defined function context
3336 
3337   Level: advanced
3338 
3339   Notes:
3340   This function is only needed if auxiliary data, attached to the `DM` with `PetscObjectCompose()`, needs to be set up or passed from the fine `DM` to the coarse `DM`.
3341 
3342   If this function is called multiple times, the hooks will be run in the order they are added.
3343 
3344   In order to compose with nonlinear preconditioning without duplicating storage, the hook should be implemented to
3345   extract the finest level information from its context (instead of from the `SNES`).
3346 
3347   The hooks are automatically called by `DMRestrict()`
3348 
3349 .seealso: [](ch_dmbase), `DM`, `DMCoarsenHookRemove()`, `DMRefineHookAdd()`, `SNESFASGetInterpolation()`, `SNESFASGetInjection()`, `PetscObjectCompose()`, `PetscContainerCreate()`
3350 @*/
3351 PetscErrorCode DMCoarsenHookAdd(DM fine, PetscErrorCode (*coarsenhook)(DM fine, DM coarse, void *ctx), PetscErrorCode (*restricthook)(DM fine, Mat mrestrict, Vec rscale, Mat inject, DM coarse, void *ctx), void *ctx)
3352 {
3353   DMCoarsenHookLink link, *p;
3354 
3355   PetscFunctionBegin;
3356   PetscValidHeaderSpecific(fine, DM_CLASSID, 1);
3357   for (p = &fine->coarsenhook; *p; p = &(*p)->next) { /* Scan to the end of the current list of hooks */
3358     if ((*p)->coarsenhook == coarsenhook && (*p)->restricthook == restricthook && (*p)->ctx == ctx) PetscFunctionReturn(PETSC_SUCCESS);
3359   }
3360   PetscCall(PetscNew(&link));
3361   link->coarsenhook  = coarsenhook;
3362   link->restricthook = restricthook;
3363   link->ctx          = ctx;
3364   link->next         = NULL;
3365   *p                 = link;
3366   PetscFunctionReturn(PETSC_SUCCESS);
3367 }
3368 
3369 /*@C
3370   DMCoarsenHookRemove - remove a callback set with `DMCoarsenHookAdd()`
3371 
3372   Logically Collective; No Fortran Support
3373 
3374   Input Parameters:
3375 + fine         - `DM` on which to run a hook when restricting to a coarser level
3376 . coarsenhook  - function to run when setting up a coarser level
3377 . restricthook - function to run to update data on coarser levels
3378 - ctx          - [optional] user-defined context for provide data for the hooks (may be `NULL`)
3379 
3380   Level: advanced
3381 
3382   Note:
3383   This function does nothing if the hook is not in the list.
3384 
3385 .seealso: [](ch_dmbase), `DM`, `DMCoarsenHookAdd()`, `DMRefineHookAdd()`, `SNESFASGetInterpolation()`, `SNESFASGetInjection()`, `PetscObjectCompose()`, `PetscContainerCreate()`
3386 @*/
3387 PetscErrorCode DMCoarsenHookRemove(DM fine, PetscErrorCode (*coarsenhook)(DM, DM, void *), PetscErrorCode (*restricthook)(DM, Mat, Vec, Mat, DM, void *), void *ctx)
3388 {
3389   DMCoarsenHookLink link, *p;
3390 
3391   PetscFunctionBegin;
3392   PetscValidHeaderSpecific(fine, DM_CLASSID, 1);
3393   for (p = &fine->coarsenhook; *p; p = &(*p)->next) { /* Search the list of current hooks */
3394     if ((*p)->coarsenhook == coarsenhook && (*p)->restricthook == restricthook && (*p)->ctx == ctx) {
3395       link = *p;
3396       *p   = link->next;
3397       PetscCall(PetscFree(link));
3398       break;
3399     }
3400   }
3401   PetscFunctionReturn(PETSC_SUCCESS);
3402 }
3403 
3404 /*@
3405   DMRestrict - restricts user-defined problem data to a coarser `DM` by running hooks registered by `DMCoarsenHookAdd()`
3406 
3407   Collective if any hooks are
3408 
3409   Input Parameters:
3410 + fine    - finer `DM` from which the data is obtained
3411 . restrct - restriction matrix, apply using `MatRestrict()`, usually the transpose of the interpolation
3412 . rscale  - scaling vector for restriction
3413 . inject  - injection matrix, also use `MatRestrict()`
3414 - coarse  - coarser `DM` to update
3415 
3416   Level: developer
3417 
3418   Developer Notes:
3419   Though this routine is called `DMRestrict()` the hooks are added with `DMCoarsenHookAdd()`, a consistent terminology would be better
3420 
3421 .seealso: [](ch_dmbase), `DM`, `DMCoarsenHookAdd()`, `MatRestrict()`, `DMInterpolate()`, `DMRefineHookAdd()`
3422 @*/
3423 PetscErrorCode DMRestrict(DM fine, Mat restrct, Vec rscale, Mat inject, DM coarse)
3424 {
3425   DMCoarsenHookLink link;
3426 
3427   PetscFunctionBegin;
3428   for (link = fine->coarsenhook; link; link = link->next) {
3429     if (link->restricthook) PetscCall((*link->restricthook)(fine, restrct, rscale, inject, coarse, link->ctx));
3430   }
3431   PetscFunctionReturn(PETSC_SUCCESS);
3432 }
3433 
3434 /*@C
3435   DMSubDomainHookAdd - adds a callback to be run when restricting a problem to the coarse grid
3436 
3437   Logically Collective; No Fortran Support
3438 
3439   Input Parameters:
3440 + global       - global `DM`
3441 . ddhook       - function to run to pass data to the decomposition `DM` upon its creation
3442 . restricthook - function to run to update data on block solve (at the beginning of the block solve)
3443 - ctx          - [optional] user-defined context for provide data for the hooks (may be `NULL`)
3444 
3445   Calling sequence of `ddhook`:
3446 + global - global `DM`
3447 . block  - block `DM`
3448 - ctx    - optional user-defined function context
3449 
3450   Calling sequence of `restricthook`:
3451 + global - global `DM`
3452 . out    - scatter to the outer (with ghost and overlap points) block vector
3453 . in     - scatter to block vector values only owned locally
3454 . block  - block `DM`
3455 - ctx    - optional user-defined function context
3456 
3457   Level: advanced
3458 
3459   Notes:
3460   This function is only needed if auxiliary data needs to be set up on subdomain `DM`s.
3461 
3462   If this function is called multiple times, the hooks will be run in the order they are added.
3463 
3464   In order to compose with nonlinear preconditioning without duplicating storage, the hook should be implemented to
3465   extract the global information from its context (instead of from the `SNES`).
3466 
3467 .seealso: [](ch_dmbase), `DM`, `DMSubDomainHookRemove()`, `DMRefineHookAdd()`, `SNESFASGetInterpolation()`, `SNESFASGetInjection()`, `PetscObjectCompose()`, `PetscContainerCreate()`
3468 @*/
3469 PetscErrorCode DMSubDomainHookAdd(DM global, PetscErrorCode (*ddhook)(DM global, DM block, void *ctx), PetscErrorCode (*restricthook)(DM global, VecScatter out, VecScatter in, DM block, void *ctx), void *ctx)
3470 {
3471   DMSubDomainHookLink link, *p;
3472 
3473   PetscFunctionBegin;
3474   PetscValidHeaderSpecific(global, DM_CLASSID, 1);
3475   for (p = &global->subdomainhook; *p; p = &(*p)->next) { /* Scan to the end of the current list of hooks */
3476     if ((*p)->ddhook == ddhook && (*p)->restricthook == restricthook && (*p)->ctx == ctx) PetscFunctionReturn(PETSC_SUCCESS);
3477   }
3478   PetscCall(PetscNew(&link));
3479   link->restricthook = restricthook;
3480   link->ddhook       = ddhook;
3481   link->ctx          = ctx;
3482   link->next         = NULL;
3483   *p                 = link;
3484   PetscFunctionReturn(PETSC_SUCCESS);
3485 }
3486 
3487 /*@C
3488   DMSubDomainHookRemove - remove a callback from the list to be run when restricting a problem to the coarse grid
3489 
3490   Logically Collective; No Fortran Support
3491 
3492   Input Parameters:
3493 + global       - global `DM`
3494 . ddhook       - function to run to pass data to the decomposition `DM` upon its creation
3495 . restricthook - function to run to update data on block solve (at the beginning of the block solve)
3496 - ctx          - [optional] user-defined context for provide data for the hooks (may be `NULL`)
3497 
3498   Level: advanced
3499 
3500 .seealso: [](ch_dmbase), `DM`, `DMSubDomainHookAdd()`, `SNESFASGetInterpolation()`, `SNESFASGetInjection()`, `PetscObjectCompose()`, `PetscContainerCreate()`
3501 @*/
3502 PetscErrorCode DMSubDomainHookRemove(DM global, PetscErrorCode (*ddhook)(DM, DM, void *), PetscErrorCode (*restricthook)(DM, VecScatter, VecScatter, DM, void *), void *ctx)
3503 {
3504   DMSubDomainHookLink link, *p;
3505 
3506   PetscFunctionBegin;
3507   PetscValidHeaderSpecific(global, DM_CLASSID, 1);
3508   for (p = &global->subdomainhook; *p; p = &(*p)->next) { /* Search the list of current hooks */
3509     if ((*p)->ddhook == ddhook && (*p)->restricthook == restricthook && (*p)->ctx == ctx) {
3510       link = *p;
3511       *p   = link->next;
3512       PetscCall(PetscFree(link));
3513       break;
3514     }
3515   }
3516   PetscFunctionReturn(PETSC_SUCCESS);
3517 }
3518 
3519 /*@
3520   DMSubDomainRestrict - restricts user-defined problem data to a block `DM` by running hooks registered by `DMSubDomainHookAdd()`
3521 
3522   Collective if any hooks are
3523 
3524   Input Parameters:
3525 + global   - The global `DM` to use as a base
3526 . oscatter - The scatter from domain global vector filling subdomain global vector with overlap
3527 . gscatter - The scatter from domain global vector filling subdomain local vector with ghosts
3528 - subdm    - The subdomain `DM` to update
3529 
3530   Level: developer
3531 
3532 .seealso: [](ch_dmbase), `DM`, `DMCoarsenHookAdd()`, `MatRestrict()`
3533 @*/
3534 PetscErrorCode DMSubDomainRestrict(DM global, VecScatter oscatter, VecScatter gscatter, DM subdm)
3535 {
3536   DMSubDomainHookLink link;
3537 
3538   PetscFunctionBegin;
3539   for (link = global->subdomainhook; link; link = link->next) {
3540     if (link->restricthook) PetscCall((*link->restricthook)(global, oscatter, gscatter, subdm, link->ctx));
3541   }
3542   PetscFunctionReturn(PETSC_SUCCESS);
3543 }
3544 
3545 /*@
3546   DMGetCoarsenLevel - Gets the number of coarsenings that have generated this `DM`.
3547 
3548   Not Collective
3549 
3550   Input Parameter:
3551 . dm - the `DM` object
3552 
3553   Output Parameter:
3554 . level - number of coarsenings
3555 
3556   Level: developer
3557 
3558 .seealso: [](ch_dmbase), `DM`, `DMCoarsen()`, `DMSetCoarsenLevel()`, `DMGetRefineLevel()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`
3559 @*/
3560 PetscErrorCode DMGetCoarsenLevel(DM dm, PetscInt *level)
3561 {
3562   PetscFunctionBegin;
3563   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
3564   PetscAssertPointer(level, 2);
3565   *level = dm->leveldown;
3566   PetscFunctionReturn(PETSC_SUCCESS);
3567 }
3568 
3569 /*@
3570   DMSetCoarsenLevel - Sets the number of coarsenings that have generated this `DM`.
3571 
3572   Collective
3573 
3574   Input Parameters:
3575 + dm    - the `DM` object
3576 - level - number of coarsenings
3577 
3578   Level: developer
3579 
3580   Note:
3581   This is rarely used directly, the information is automatically set when a `DM` is created with `DMCoarsen()`
3582 
3583 .seealso: [](ch_dmbase), `DM`, `DMCoarsen()`, `DMGetCoarsenLevel()`, `DMGetRefineLevel()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`
3584 @*/
3585 PetscErrorCode DMSetCoarsenLevel(DM dm, PetscInt level)
3586 {
3587   PetscFunctionBegin;
3588   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
3589   dm->leveldown = level;
3590   PetscFunctionReturn(PETSC_SUCCESS);
3591 }
3592 
3593 /*@C
3594   DMRefineHierarchy - Refines a `DM` object, all levels at once
3595 
3596   Collective
3597 
3598   Input Parameters:
3599 + dm      - the `DM` object
3600 - nlevels - the number of levels of refinement
3601 
3602   Output Parameter:
3603 . dmf - the refined `DM` hierarchy
3604 
3605   Level: developer
3606 
3607 .seealso: [](ch_dmbase), `DM`, `DMCoarsen()`, `DMCoarsenHierarchy()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`
3608 @*/
3609 PetscErrorCode DMRefineHierarchy(DM dm, PetscInt nlevels, DM dmf[])
3610 {
3611   PetscFunctionBegin;
3612   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
3613   PetscCheck(nlevels >= 0, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "nlevels cannot be negative");
3614   if (nlevels == 0) PetscFunctionReturn(PETSC_SUCCESS);
3615   PetscAssertPointer(dmf, 3);
3616   if (dm->ops->refine && !dm->ops->refinehierarchy) {
3617     PetscInt i;
3618 
3619     PetscCall(DMRefine(dm, PetscObjectComm((PetscObject)dm), &dmf[0]));
3620     for (i = 1; i < nlevels; i++) PetscCall(DMRefine(dmf[i - 1], PetscObjectComm((PetscObject)dm), &dmf[i]));
3621   } else PetscUseTypeMethod(dm, refinehierarchy, nlevels, dmf);
3622   PetscFunctionReturn(PETSC_SUCCESS);
3623 }
3624 
3625 /*@C
3626   DMCoarsenHierarchy - Coarsens a `DM` object, all levels at once
3627 
3628   Collective
3629 
3630   Input Parameters:
3631 + dm      - the `DM` object
3632 - nlevels - the number of levels of coarsening
3633 
3634   Output Parameter:
3635 . dmc - the coarsened `DM` hierarchy
3636 
3637   Level: developer
3638 
3639 .seealso: [](ch_dmbase), `DM`, `DMCoarsen()`, `DMRefineHierarchy()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`
3640 @*/
3641 PetscErrorCode DMCoarsenHierarchy(DM dm, PetscInt nlevels, DM dmc[])
3642 {
3643   PetscFunctionBegin;
3644   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
3645   PetscCheck(nlevels >= 0, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "nlevels cannot be negative");
3646   if (nlevels == 0) PetscFunctionReturn(PETSC_SUCCESS);
3647   PetscAssertPointer(dmc, 3);
3648   if (dm->ops->coarsen && !dm->ops->coarsenhierarchy) {
3649     PetscInt i;
3650 
3651     PetscCall(DMCoarsen(dm, PetscObjectComm((PetscObject)dm), &dmc[0]));
3652     for (i = 1; i < nlevels; i++) PetscCall(DMCoarsen(dmc[i - 1], PetscObjectComm((PetscObject)dm), &dmc[i]));
3653   } else PetscUseTypeMethod(dm, coarsenhierarchy, nlevels, dmc);
3654   PetscFunctionReturn(PETSC_SUCCESS);
3655 }
3656 
3657 /*@C
3658   DMSetApplicationContextDestroy - Sets a user function that will be called to destroy the application context when the `DM` is destroyed
3659 
3660   Logically Collective if the function is collective
3661 
3662   Input Parameters:
3663 + dm      - the `DM` object
3664 - destroy - the destroy function
3665 
3666   Level: intermediate
3667 
3668 .seealso: [](ch_dmbase), `DM`, `DMSetApplicationContext()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMGetApplicationContext()`
3669 @*/
3670 PetscErrorCode DMSetApplicationContextDestroy(DM dm, PetscErrorCode (*destroy)(void **))
3671 {
3672   PetscFunctionBegin;
3673   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
3674   dm->ctxdestroy = destroy;
3675   PetscFunctionReturn(PETSC_SUCCESS);
3676 }
3677 
3678 /*@
3679   DMSetApplicationContext - Set a user context into a `DM` object
3680 
3681   Not Collective
3682 
3683   Input Parameters:
3684 + dm  - the `DM` object
3685 - ctx - the user context
3686 
3687   Level: intermediate
3688 
3689   Note:
3690   A user context is a way to pass problem specific information that is accessible whenever the `DM` is available
3691 
3692 .seealso: [](ch_dmbase), `DM`, `DMGetApplicationContext()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`
3693 @*/
3694 PetscErrorCode DMSetApplicationContext(DM dm, void *ctx)
3695 {
3696   PetscFunctionBegin;
3697   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
3698   dm->ctx = ctx;
3699   PetscFunctionReturn(PETSC_SUCCESS);
3700 }
3701 
3702 /*@
3703   DMGetApplicationContext - Gets a user context from a `DM` object
3704 
3705   Not Collective
3706 
3707   Input Parameter:
3708 . dm - the `DM` object
3709 
3710   Output Parameter:
3711 . ctx - the user context
3712 
3713   Level: intermediate
3714 
3715   Note:
3716   A user context is a way to pass problem specific information that is accessible whenever the `DM` is available
3717 
3718 .seealso: [](ch_dmbase), `DM`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`
3719 @*/
3720 PetscErrorCode DMGetApplicationContext(DM dm, void *ctx)
3721 {
3722   PetscFunctionBegin;
3723   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
3724   *(void **)ctx = dm->ctx;
3725   PetscFunctionReturn(PETSC_SUCCESS);
3726 }
3727 
3728 /*@C
3729   DMSetVariableBounds - sets a function to compute the lower and upper bound vectors for `SNESVI`.
3730 
3731   Logically Collective
3732 
3733   Input Parameters:
3734 + dm - the DM object
3735 - f  - the function that computes variable bounds used by SNESVI (use `NULL` to cancel a previous function that was set)
3736 
3737   Level: intermediate
3738 
3739 .seealso: [](ch_dmbase), `DM`, `DMComputeVariableBounds()`, `DMHasVariableBounds()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMGetApplicationContext()`,
3740          `DMSetJacobian()`
3741 @*/
3742 PetscErrorCode DMSetVariableBounds(DM dm, PetscErrorCode (*f)(DM, Vec, Vec))
3743 {
3744   PetscFunctionBegin;
3745   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
3746   dm->ops->computevariablebounds = f;
3747   PetscFunctionReturn(PETSC_SUCCESS);
3748 }
3749 
3750 /*@
3751   DMHasVariableBounds - does the `DM` object have a variable bounds function?
3752 
3753   Not Collective
3754 
3755   Input Parameter:
3756 . dm - the `DM` object to destroy
3757 
3758   Output Parameter:
3759 . flg - `PETSC_TRUE` if the variable bounds function exists
3760 
3761   Level: developer
3762 
3763 .seealso: [](ch_dmbase), `DM`, `DMComputeVariableBounds()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMGetApplicationContext()`
3764 @*/
3765 PetscErrorCode DMHasVariableBounds(DM dm, PetscBool *flg)
3766 {
3767   PetscFunctionBegin;
3768   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
3769   PetscAssertPointer(flg, 2);
3770   *flg = (dm->ops->computevariablebounds) ? PETSC_TRUE : PETSC_FALSE;
3771   PetscFunctionReturn(PETSC_SUCCESS);
3772 }
3773 
3774 /*@C
3775   DMComputeVariableBounds - compute variable bounds used by `SNESVI`.
3776 
3777   Logically Collective
3778 
3779   Input Parameter:
3780 . dm - the `DM` object
3781 
3782   Output Parameters:
3783 + xl - lower bound
3784 - xu - upper bound
3785 
3786   Level: advanced
3787 
3788   Note:
3789   This is generally not called by users. It calls the function provided by the user with DMSetVariableBounds()
3790 
3791 .seealso: [](ch_dmbase), `DM`, `DMHasVariableBounds()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMGetApplicationContext()`
3792 @*/
3793 PetscErrorCode DMComputeVariableBounds(DM dm, Vec xl, Vec xu)
3794 {
3795   PetscFunctionBegin;
3796   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
3797   PetscValidHeaderSpecific(xl, VEC_CLASSID, 2);
3798   PetscValidHeaderSpecific(xu, VEC_CLASSID, 3);
3799   PetscUseTypeMethod(dm, computevariablebounds, xl, xu);
3800   PetscFunctionReturn(PETSC_SUCCESS);
3801 }
3802 
3803 /*@
3804   DMHasColoring - does the `DM` object have a method of providing a coloring?
3805 
3806   Not Collective
3807 
3808   Input Parameter:
3809 . dm - the DM object
3810 
3811   Output Parameter:
3812 . flg - `PETSC_TRUE` if the `DM` has facilities for `DMCreateColoring()`.
3813 
3814   Level: developer
3815 
3816 .seealso: [](ch_dmbase), `DM`, `DMCreateColoring()`
3817 @*/
3818 PetscErrorCode DMHasColoring(DM dm, PetscBool *flg)
3819 {
3820   PetscFunctionBegin;
3821   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
3822   PetscAssertPointer(flg, 2);
3823   *flg = (dm->ops->getcoloring) ? PETSC_TRUE : PETSC_FALSE;
3824   PetscFunctionReturn(PETSC_SUCCESS);
3825 }
3826 
3827 /*@
3828   DMHasCreateRestriction - does the `DM` object have a method of providing a restriction?
3829 
3830   Not Collective
3831 
3832   Input Parameter:
3833 . dm - the `DM` object
3834 
3835   Output Parameter:
3836 . flg - `PETSC_TRUE` if the `DM` has facilities for `DMCreateRestriction()`.
3837 
3838   Level: developer
3839 
3840 .seealso: [](ch_dmbase), `DM`, `DMCreateRestriction()`, `DMHasCreateInterpolation()`, `DMHasCreateInjection()`
3841 @*/
3842 PetscErrorCode DMHasCreateRestriction(DM dm, PetscBool *flg)
3843 {
3844   PetscFunctionBegin;
3845   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
3846   PetscAssertPointer(flg, 2);
3847   *flg = (dm->ops->createrestriction) ? PETSC_TRUE : PETSC_FALSE;
3848   PetscFunctionReturn(PETSC_SUCCESS);
3849 }
3850 
3851 /*@
3852   DMHasCreateInjection - does the `DM` object have a method of providing an injection?
3853 
3854   Not Collective
3855 
3856   Input Parameter:
3857 . dm - the `DM` object
3858 
3859   Output Parameter:
3860 . flg - `PETSC_TRUE` if the `DM` has facilities for `DMCreateInjection()`.
3861 
3862   Level: developer
3863 
3864 .seealso: [](ch_dmbase), `DM`, `DMCreateInjection()`, `DMHasCreateRestriction()`, `DMHasCreateInterpolation()`
3865 @*/
3866 PetscErrorCode DMHasCreateInjection(DM dm, PetscBool *flg)
3867 {
3868   PetscFunctionBegin;
3869   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
3870   PetscAssertPointer(flg, 2);
3871   if (dm->ops->hascreateinjection) PetscUseTypeMethod(dm, hascreateinjection, flg);
3872   else *flg = (dm->ops->createinjection) ? PETSC_TRUE : PETSC_FALSE;
3873   PetscFunctionReturn(PETSC_SUCCESS);
3874 }
3875 
3876 PetscFunctionList DMList              = NULL;
3877 PetscBool         DMRegisterAllCalled = PETSC_FALSE;
3878 
3879 /*@C
3880   DMSetType - Builds a `DM`, for a particular `DM` implementation.
3881 
3882   Collective
3883 
3884   Input Parameters:
3885 + dm     - The `DM` object
3886 - method - The name of the `DMType`, for example `DMDA`, `DMPLEX`
3887 
3888   Options Database Key:
3889 . -dm_type <type> - Sets the `DM` type; use -help for a list of available types
3890 
3891   Level: intermediate
3892 
3893   Note:
3894   Of the `DM` is constructed by directly calling a function to construct a particular `DM`, for example, `DMDACreate2d()` or `DMPlexCreateBoxMesh()`
3895 
3896 .seealso: [](ch_dmbase), `DM`, `DMType`, `DMDA`, `DMPLEX`, `DMGetType()`, `DMCreate()`, `DMDACreate2d()`
3897 @*/
3898 PetscErrorCode DMSetType(DM dm, DMType method)
3899 {
3900   PetscErrorCode (*r)(DM);
3901   PetscBool match;
3902 
3903   PetscFunctionBegin;
3904   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
3905   PetscCall(PetscObjectTypeCompare((PetscObject)dm, method, &match));
3906   if (match) PetscFunctionReturn(PETSC_SUCCESS);
3907 
3908   PetscCall(DMRegisterAll());
3909   PetscCall(PetscFunctionListFind(DMList, method, &r));
3910   PetscCheck(r, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_UNKNOWN_TYPE, "Unknown DM type: %s", method);
3911 
3912   PetscTryTypeMethod(dm, destroy);
3913   PetscCall(PetscMemzero(dm->ops, sizeof(*dm->ops)));
3914   PetscCall(PetscObjectChangeTypeName((PetscObject)dm, method));
3915   PetscCall((*r)(dm));
3916   PetscFunctionReturn(PETSC_SUCCESS);
3917 }
3918 
3919 /*@C
3920   DMGetType - Gets the `DM` type name (as a string) from the `DM`.
3921 
3922   Not Collective
3923 
3924   Input Parameter:
3925 . dm - The `DM`
3926 
3927   Output Parameter:
3928 . type - The `DMType` name
3929 
3930   Level: intermediate
3931 
3932 .seealso: [](ch_dmbase), `DM`, `DMType`, `DMDA`, `DMPLEX`, `DMSetType()`, `DMCreate()`
3933 @*/
3934 PetscErrorCode DMGetType(DM dm, DMType *type)
3935 {
3936   PetscFunctionBegin;
3937   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
3938   PetscAssertPointer(type, 2);
3939   PetscCall(DMRegisterAll());
3940   *type = ((PetscObject)dm)->type_name;
3941   PetscFunctionReturn(PETSC_SUCCESS);
3942 }
3943 
3944 /*@C
3945   DMConvert - Converts a `DM` to another `DM`, either of the same or different type.
3946 
3947   Collective
3948 
3949   Input Parameters:
3950 + dm      - the `DM`
3951 - newtype - new `DM` type (use "same" for the same type)
3952 
3953   Output Parameter:
3954 . M - pointer to new `DM`
3955 
3956   Level: intermediate
3957 
3958   Notes:
3959   Cannot be used to convert a sequential `DM` to a parallel or a parallel to sequential,
3960   the MPI communicator of the generated `DM` is always the same as the communicator
3961   of the input `DM`.
3962 
3963 .seealso: [](ch_dmbase), `DM`, `DMSetType()`, `DMCreate()`, `DMClone()`
3964 @*/
3965 PetscErrorCode DMConvert(DM dm, DMType newtype, DM *M)
3966 {
3967   DM        B;
3968   char      convname[256];
3969   PetscBool sametype /*, issame */;
3970 
3971   PetscFunctionBegin;
3972   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
3973   PetscValidType(dm, 1);
3974   PetscAssertPointer(M, 3);
3975   PetscCall(PetscObjectTypeCompare((PetscObject)dm, newtype, &sametype));
3976   /* PetscCall(PetscStrcmp(newtype, "same", &issame)); */
3977   if (sametype) {
3978     *M = dm;
3979     PetscCall(PetscObjectReference((PetscObject)dm));
3980     PetscFunctionReturn(PETSC_SUCCESS);
3981   } else {
3982     PetscErrorCode (*conv)(DM, DMType, DM *) = NULL;
3983 
3984     /*
3985        Order of precedence:
3986        1) See if a specialized converter is known to the current DM.
3987        2) See if a specialized converter is known to the desired DM class.
3988        3) See if a good general converter is registered for the desired class
3989        4) See if a good general converter is known for the current matrix.
3990        5) Use a really basic converter.
3991     */
3992 
3993     /* 1) See if a specialized converter is known to the current DM and the desired class */
3994     PetscCall(PetscStrncpy(convname, "DMConvert_", sizeof(convname)));
3995     PetscCall(PetscStrlcat(convname, ((PetscObject)dm)->type_name, sizeof(convname)));
3996     PetscCall(PetscStrlcat(convname, "_", sizeof(convname)));
3997     PetscCall(PetscStrlcat(convname, newtype, sizeof(convname)));
3998     PetscCall(PetscStrlcat(convname, "_C", sizeof(convname)));
3999     PetscCall(PetscObjectQueryFunction((PetscObject)dm, convname, &conv));
4000     if (conv) goto foundconv;
4001 
4002     /* 2)  See if a specialized converter is known to the desired DM class. */
4003     PetscCall(DMCreate(PetscObjectComm((PetscObject)dm), &B));
4004     PetscCall(DMSetType(B, newtype));
4005     PetscCall(PetscStrncpy(convname, "DMConvert_", sizeof(convname)));
4006     PetscCall(PetscStrlcat(convname, ((PetscObject)dm)->type_name, sizeof(convname)));
4007     PetscCall(PetscStrlcat(convname, "_", sizeof(convname)));
4008     PetscCall(PetscStrlcat(convname, newtype, sizeof(convname)));
4009     PetscCall(PetscStrlcat(convname, "_C", sizeof(convname)));
4010     PetscCall(PetscObjectQueryFunction((PetscObject)B, convname, &conv));
4011     if (conv) {
4012       PetscCall(DMDestroy(&B));
4013       goto foundconv;
4014     }
4015 
4016 #if 0
4017     /* 3) See if a good general converter is registered for the desired class */
4018     conv = B->ops->convertfrom;
4019     PetscCall(DMDestroy(&B));
4020     if (conv) goto foundconv;
4021 
4022     /* 4) See if a good general converter is known for the current matrix */
4023     if (dm->ops->convert) {
4024       conv = dm->ops->convert;
4025     }
4026     if (conv) goto foundconv;
4027 #endif
4028 
4029     /* 5) Use a really basic converter. */
4030     SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_SUP, "No conversion possible between DM types %s and %s", ((PetscObject)dm)->type_name, newtype);
4031 
4032   foundconv:
4033     PetscCall(PetscLogEventBegin(DM_Convert, dm, 0, 0, 0));
4034     PetscCall((*conv)(dm, newtype, M));
4035     /* Things that are independent of DM type: We should consult DMClone() here */
4036     {
4037       const PetscReal *maxCell, *Lstart, *L;
4038 
4039       PetscCall(DMGetPeriodicity(dm, &maxCell, &Lstart, &L));
4040       PetscCall(DMSetPeriodicity(*M, maxCell, Lstart, L));
4041       (*M)->prealloc_only = dm->prealloc_only;
4042       PetscCall(PetscFree((*M)->vectype));
4043       PetscCall(PetscStrallocpy(dm->vectype, (char **)&(*M)->vectype));
4044       PetscCall(PetscFree((*M)->mattype));
4045       PetscCall(PetscStrallocpy(dm->mattype, (char **)&(*M)->mattype));
4046     }
4047     PetscCall(PetscLogEventEnd(DM_Convert, dm, 0, 0, 0));
4048   }
4049   PetscCall(PetscObjectStateIncrease((PetscObject)*M));
4050   PetscFunctionReturn(PETSC_SUCCESS);
4051 }
4052 
4053 /*--------------------------------------------------------------------------------------------------------------------*/
4054 
4055 /*@C
4056   DMRegister -  Adds a new `DM` type implementation
4057 
4058   Not Collective
4059 
4060   Input Parameters:
4061 + sname    - The name of a new user-defined creation routine
4062 - function - The creation routine itself
4063 
4064   Level: advanced
4065 
4066   Notes:
4067   `DMRegister()` may be called multiple times to add several user-defined `DM`s
4068 
4069   Example Usage:
4070 .vb
4071     DMRegister("my_da", MyDMCreate);
4072 .ve
4073 
4074   Then, your `DM` type can be chosen with the procedural interface via
4075 .vb
4076     DMCreate(MPI_Comm, DM *);
4077     DMSetType(DM,"my_da");
4078 .ve
4079   or at runtime via the option
4080 .vb
4081     -da_type my_da
4082 .ve
4083 
4084 .seealso: [](ch_dmbase), `DM`, `DMType`, `DMSetType()`, `DMRegisterAll()`, `DMRegisterDestroy()`
4085 @*/
4086 PetscErrorCode DMRegister(const char sname[], PetscErrorCode (*function)(DM))
4087 {
4088   PetscFunctionBegin;
4089   PetscCall(DMInitializePackage());
4090   PetscCall(PetscFunctionListAdd(&DMList, sname, function));
4091   PetscFunctionReturn(PETSC_SUCCESS);
4092 }
4093 
4094 /*@C
4095   DMLoad - Loads a DM that has been stored in binary  with `DMView()`.
4096 
4097   Collective
4098 
4099   Input Parameters:
4100 + newdm  - the newly loaded `DM`, this needs to have been created with `DMCreate()` or
4101            some related function before a call to `DMLoad()`.
4102 - viewer - binary file viewer, obtained from `PetscViewerBinaryOpen()` or
4103            `PETSCVIEWERHDF5` file viewer, obtained from `PetscViewerHDF5Open()`
4104 
4105   Level: intermediate
4106 
4107   Notes:
4108   The type is determined by the data in the file, any type set into the DM before this call is ignored.
4109 
4110   Using `PETSCVIEWERHDF5` type with `PETSC_VIEWER_HDF5_PETSC` format, one can save multiple `DMPLEX`
4111   meshes in a single HDF5 file. This in turn requires one to name the `DMPLEX` object with `PetscObjectSetName()`
4112   before saving it with `DMView()` and before loading it with `DMLoad()` for identification of the mesh object.
4113 
4114 .seealso: [](ch_dmbase), `DM`, `PetscViewerBinaryOpen()`, `DMView()`, `MatLoad()`, `VecLoad()`
4115 @*/
4116 PetscErrorCode DMLoad(DM newdm, PetscViewer viewer)
4117 {
4118   PetscBool isbinary, ishdf5;
4119 
4120   PetscFunctionBegin;
4121   PetscValidHeaderSpecific(newdm, DM_CLASSID, 1);
4122   PetscValidHeaderSpecific(viewer, PETSC_VIEWER_CLASSID, 2);
4123   PetscCall(PetscViewerCheckReadable(viewer));
4124   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary));
4125   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERHDF5, &ishdf5));
4126   PetscCall(PetscLogEventBegin(DM_Load, viewer, 0, 0, 0));
4127   if (isbinary) {
4128     PetscInt classid;
4129     char     type[256];
4130 
4131     PetscCall(PetscViewerBinaryRead(viewer, &classid, 1, NULL, PETSC_INT));
4132     PetscCheck(classid == DM_FILE_CLASSID, PetscObjectComm((PetscObject)newdm), PETSC_ERR_ARG_WRONG, "Not DM next in file, classid found %d", (int)classid);
4133     PetscCall(PetscViewerBinaryRead(viewer, type, 256, NULL, PETSC_CHAR));
4134     PetscCall(DMSetType(newdm, type));
4135     PetscTryTypeMethod(newdm, load, viewer);
4136   } else if (ishdf5) {
4137     PetscTryTypeMethod(newdm, load, viewer);
4138   } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Invalid viewer; open viewer with PetscViewerBinaryOpen() or PetscViewerHDF5Open()");
4139   PetscCall(PetscLogEventEnd(DM_Load, viewer, 0, 0, 0));
4140   PetscFunctionReturn(PETSC_SUCCESS);
4141 }
4142 
4143 /******************************** FEM Support **********************************/
4144 
4145 PetscErrorCode DMPrintCellIndices(PetscInt c, const char name[], PetscInt len, const PetscInt x[])
4146 {
4147   PetscInt f;
4148 
4149   PetscFunctionBegin;
4150   PetscCall(PetscPrintf(PETSC_COMM_SELF, "Cell %" PetscInt_FMT " Element %s\n", c, name));
4151   for (f = 0; f < len; ++f) PetscCall(PetscPrintf(PETSC_COMM_SELF, "  | %" PetscInt_FMT " |\n", x[f]));
4152   PetscFunctionReturn(PETSC_SUCCESS);
4153 }
4154 
4155 PetscErrorCode DMPrintCellVector(PetscInt c, const char name[], PetscInt len, const PetscScalar x[])
4156 {
4157   PetscInt f;
4158 
4159   PetscFunctionBegin;
4160   PetscCall(PetscPrintf(PETSC_COMM_SELF, "Cell %" PetscInt_FMT " Element %s\n", c, name));
4161   for (f = 0; f < len; ++f) PetscCall(PetscPrintf(PETSC_COMM_SELF, "  | %g |\n", (double)PetscRealPart(x[f])));
4162   PetscFunctionReturn(PETSC_SUCCESS);
4163 }
4164 
4165 PetscErrorCode DMPrintCellVectorReal(PetscInt c, const char name[], PetscInt len, const PetscReal x[])
4166 {
4167   PetscInt f;
4168 
4169   PetscFunctionBegin;
4170   PetscCall(PetscPrintf(PETSC_COMM_SELF, "Cell %" PetscInt_FMT " Element %s\n", c, name));
4171   for (f = 0; f < len; ++f) PetscCall(PetscPrintf(PETSC_COMM_SELF, "  | %g |\n", (double)x[f]));
4172   PetscFunctionReturn(PETSC_SUCCESS);
4173 }
4174 
4175 PetscErrorCode DMPrintCellMatrix(PetscInt c, const char name[], PetscInt rows, PetscInt cols, const PetscScalar A[])
4176 {
4177   PetscInt f, g;
4178 
4179   PetscFunctionBegin;
4180   PetscCall(PetscPrintf(PETSC_COMM_SELF, "Cell %" PetscInt_FMT " Element %s\n", c, name));
4181   for (f = 0; f < rows; ++f) {
4182     PetscCall(PetscPrintf(PETSC_COMM_SELF, "  |"));
4183     for (g = 0; g < cols; ++g) PetscCall(PetscPrintf(PETSC_COMM_SELF, " % 9.5g", (double)PetscRealPart(A[f * cols + g])));
4184     PetscCall(PetscPrintf(PETSC_COMM_SELF, " |\n"));
4185   }
4186   PetscFunctionReturn(PETSC_SUCCESS);
4187 }
4188 
4189 PetscErrorCode DMPrintLocalVec(DM dm, const char name[], PetscReal tol, Vec X)
4190 {
4191   PetscInt           localSize, bs;
4192   PetscMPIInt        size;
4193   Vec                x, xglob;
4194   const PetscScalar *xarray;
4195 
4196   PetscFunctionBegin;
4197   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)dm), &size));
4198   PetscCall(VecDuplicate(X, &x));
4199   PetscCall(VecCopy(X, x));
4200   PetscCall(VecFilter(x, tol));
4201   PetscCall(PetscPrintf(PetscObjectComm((PetscObject)dm), "%s:\n", name));
4202   if (size > 1) {
4203     PetscCall(VecGetLocalSize(x, &localSize));
4204     PetscCall(VecGetArrayRead(x, &xarray));
4205     PetscCall(VecGetBlockSize(x, &bs));
4206     PetscCall(VecCreateMPIWithArray(PetscObjectComm((PetscObject)dm), bs, localSize, PETSC_DETERMINE, xarray, &xglob));
4207   } else {
4208     xglob = x;
4209   }
4210   PetscCall(VecView(xglob, PETSC_VIEWER_STDOUT_(PetscObjectComm((PetscObject)dm))));
4211   if (size > 1) {
4212     PetscCall(VecDestroy(&xglob));
4213     PetscCall(VecRestoreArrayRead(x, &xarray));
4214   }
4215   PetscCall(VecDestroy(&x));
4216   PetscFunctionReturn(PETSC_SUCCESS);
4217 }
4218 
4219 /*@
4220   DMGetSection - Get the `PetscSection` encoding the local data layout for the `DM`.   This is equivalent to `DMGetLocalSection()`. Deprecated in v3.12
4221 
4222   Input Parameter:
4223 . dm - The `DM`
4224 
4225   Output Parameter:
4226 . section - The `PetscSection`
4227 
4228   Options Database Key:
4229 . -dm_petscsection_view - View the `PetscSection` created by the `DM`
4230 
4231   Level: advanced
4232 
4233   Notes:
4234   Use `DMGetLocalSection()` in new code.
4235 
4236   This gets a borrowed reference, so the user should not destroy this `PetscSection`.
4237 
4238 .seealso: [](ch_dmbase), `DM`, `DMGetLocalSection()`, `DMSetLocalSection()`, `DMGetGlobalSection()`
4239 @*/
4240 PetscErrorCode DMGetSection(DM dm, PetscSection *section)
4241 {
4242   PetscFunctionBegin;
4243   PetscCall(DMGetLocalSection(dm, section));
4244   PetscFunctionReturn(PETSC_SUCCESS);
4245 }
4246 
4247 /*@
4248   DMGetLocalSection - Get the `PetscSection` encoding the local data layout for the `DM`.
4249 
4250   Input Parameter:
4251 . dm - The `DM`
4252 
4253   Output Parameter:
4254 . section - The `PetscSection`
4255 
4256   Options Database Key:
4257 . -dm_petscsection_view - View the section created by the `DM`
4258 
4259   Level: intermediate
4260 
4261   Note:
4262   This gets a borrowed reference, so the user should not destroy this `PetscSection`.
4263 
4264 .seealso: [](ch_dmbase), `DM`, `DMSetLocalSection()`, `DMGetGlobalSection()`
4265 @*/
4266 PetscErrorCode DMGetLocalSection(DM dm, PetscSection *section)
4267 {
4268   PetscFunctionBegin;
4269   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
4270   PetscAssertPointer(section, 2);
4271   if (!dm->localSection && dm->ops->createlocalsection) {
4272     PetscInt d;
4273 
4274     if (dm->setfromoptionscalled) {
4275       PetscObject       obj = (PetscObject)dm;
4276       PetscViewer       viewer;
4277       PetscViewerFormat format;
4278       PetscBool         flg;
4279 
4280       PetscCall(PetscOptionsGetViewer(PetscObjectComm(obj), obj->options, obj->prefix, "-dm_petscds_view", &viewer, &format, &flg));
4281       if (flg) PetscCall(PetscViewerPushFormat(viewer, format));
4282       for (d = 0; d < dm->Nds; ++d) {
4283         PetscCall(PetscDSSetFromOptions(dm->probs[d].ds));
4284         if (flg) PetscCall(PetscDSView(dm->probs[d].ds, viewer));
4285       }
4286       if (flg) {
4287         PetscCall(PetscViewerFlush(viewer));
4288         PetscCall(PetscViewerPopFormat(viewer));
4289         PetscCall(PetscOptionsRestoreViewer(&viewer));
4290       }
4291     }
4292     PetscUseTypeMethod(dm, createlocalsection);
4293     if (dm->localSection) PetscCall(PetscObjectViewFromOptions((PetscObject)dm->localSection, NULL, "-dm_petscsection_view"));
4294   }
4295   *section = dm->localSection;
4296   PetscFunctionReturn(PETSC_SUCCESS);
4297 }
4298 
4299 /*@
4300   DMSetSection - Set the `PetscSection` encoding the local data layout for the `DM`.  This is equivalent to `DMSetLocalSection()`. Deprecated in v3.12
4301 
4302   Input Parameters:
4303 + dm      - The `DM`
4304 - section - The `PetscSection`
4305 
4306   Level: advanced
4307 
4308   Notes:
4309   Use `DMSetLocalSection()` in new code.
4310 
4311   Any existing `PetscSection` will be destroyed
4312 
4313 .seealso: [](ch_dmbase), `DM`, `DMSetLocalSection()`, `DMGetLocalSection()`, `DMSetGlobalSection()`
4314 @*/
4315 PetscErrorCode DMSetSection(DM dm, PetscSection section)
4316 {
4317   PetscFunctionBegin;
4318   PetscCall(DMSetLocalSection(dm, section));
4319   PetscFunctionReturn(PETSC_SUCCESS);
4320 }
4321 
4322 /*@
4323   DMSetLocalSection - Set the `PetscSection` encoding the local data layout for the `DM`.
4324 
4325   Input Parameters:
4326 + dm      - The `DM`
4327 - section - The `PetscSection`
4328 
4329   Level: intermediate
4330 
4331   Note:
4332   Any existing Section will be destroyed
4333 
4334 .seealso: [](ch_dmbase), `DM`, `PetscSection`, `DMGetLocalSection()`, `DMSetGlobalSection()`
4335 @*/
4336 PetscErrorCode DMSetLocalSection(DM dm, PetscSection section)
4337 {
4338   PetscInt numFields = 0;
4339   PetscInt f;
4340 
4341   PetscFunctionBegin;
4342   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
4343   if (section) PetscValidHeaderSpecific(section, PETSC_SECTION_CLASSID, 2);
4344   PetscCall(PetscObjectReference((PetscObject)section));
4345   PetscCall(PetscSectionDestroy(&dm->localSection));
4346   dm->localSection = section;
4347   if (section) PetscCall(PetscSectionGetNumFields(dm->localSection, &numFields));
4348   if (numFields) {
4349     PetscCall(DMSetNumFields(dm, numFields));
4350     for (f = 0; f < numFields; ++f) {
4351       PetscObject disc;
4352       const char *name;
4353 
4354       PetscCall(PetscSectionGetFieldName(dm->localSection, f, &name));
4355       PetscCall(DMGetField(dm, f, NULL, &disc));
4356       PetscCall(PetscObjectSetName(disc, name));
4357     }
4358   }
4359   /* The global section and the SectionSF will be rebuilt
4360      in the next call to DMGetGlobalSection() and DMGetSectionSF(). */
4361   PetscCall(PetscSectionDestroy(&dm->globalSection));
4362   PetscCall(PetscSFDestroy(&dm->sectionSF));
4363 
4364   /* Clear scratch vectors */
4365   PetscCall(DMClearGlobalVectors(dm));
4366   PetscCall(DMClearLocalVectors(dm));
4367   PetscCall(DMClearNamedGlobalVectors(dm));
4368   PetscCall(DMClearNamedLocalVectors(dm));
4369   PetscFunctionReturn(PETSC_SUCCESS);
4370 }
4371 
4372 /*@C
4373   DMCreateSectionPermutation - Create a permutation of the `PetscSection` chart and optionally a blokc structure.
4374 
4375   Input Parameter:
4376 . dm - The `DM`
4377 
4378   Output Parameter:
4379 + perm        - A permutation of the mesh points in the chart
4380 - blockStarts - A high bit is set for the point that begins every block, or NULL for default blocking
4381 
4382   Level: developer
4383 
4384 .seealso: [](ch_dmbase), `DM`, `PetscSection`, `DMGetLocalSection()`, `DMGetGlobalSection()`
4385 @*/
4386 PetscErrorCode DMCreateSectionPermutation(DM dm, IS *perm, PetscBT *blockStarts)
4387 {
4388   PetscFunctionBegin;
4389   *perm        = NULL;
4390   *blockStarts = NULL;
4391   PetscTryTypeMethod(dm, createsectionpermutation, perm, blockStarts);
4392   PetscFunctionReturn(PETSC_SUCCESS);
4393 }
4394 
4395 /*@
4396   DMGetDefaultConstraints - Get the `PetscSection` and `Mat` that specify the local constraint interpolation. See `DMSetDefaultConstraints()` for a description of the purpose of constraint interpolation.
4397 
4398   not Collective
4399 
4400   Input Parameter:
4401 . dm - The `DM`
4402 
4403   Output Parameters:
4404 + section - The `PetscSection` describing the range of the constraint matrix: relates rows of the constraint matrix to dofs of the default section.  Returns `NULL` if there are no local constraints.
4405 . mat     - The `Mat` that interpolates local constraints: its width should be the layout size of the default section.  Returns `NULL` if there are no local constraints.
4406 - bias    - Vector containing bias to be added to constrained dofs
4407 
4408   Level: advanced
4409 
4410   Note:
4411   This gets borrowed references, so the user should not destroy the `PetscSection`, `Mat`, or `Vec`.
4412 
4413 .seealso: [](ch_dmbase), `DM`, `DMSetDefaultConstraints()`
4414 @*/
4415 PetscErrorCode DMGetDefaultConstraints(DM dm, PetscSection *section, Mat *mat, Vec *bias)
4416 {
4417   PetscFunctionBegin;
4418   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
4419   if (!dm->defaultConstraint.section && !dm->defaultConstraint.mat && dm->ops->createdefaultconstraints) PetscUseTypeMethod(dm, createdefaultconstraints);
4420   if (section) *section = dm->defaultConstraint.section;
4421   if (mat) *mat = dm->defaultConstraint.mat;
4422   if (bias) *bias = dm->defaultConstraint.bias;
4423   PetscFunctionReturn(PETSC_SUCCESS);
4424 }
4425 
4426 /*@
4427   DMSetDefaultConstraints - Set the `PetscSection` and `Mat` that specify the local constraint interpolation.
4428 
4429   Collective
4430 
4431   Input Parameters:
4432 + dm      - The `DM`
4433 . section - The `PetscSection` describing the range of the constraint matrix: relates rows of the constraint matrix to dofs of the default section.  Must have a local communicator (`PETSC_COMM_SELF` or derivative).
4434 . mat     - The `Mat` that interpolates local constraints: its width should be the layout size of the default section:  `NULL` indicates no constraints.  Must have a local communicator (`PETSC_COMM_SELF` or derivative).
4435 - bias    - A bias vector to be added to constrained values in the local vector.  `NULL` indicates no bias.  Must have a local communicator (`PETSC_COMM_SELF` or derivative).
4436 
4437   Level: advanced
4438 
4439   Notes:
4440   If a constraint matrix is specified, then it is applied during `DMGlobalToLocalEnd()` when mode is `INSERT_VALUES`, `INSERT_BC_VALUES`, or `INSERT_ALL_VALUES`.  Without a constraint matrix, the local vector l returned by `DMGlobalToLocalEnd()` contains values that have been scattered from a global vector without modification; with a constraint matrix A, l is modified by computing c = A * l + bias, l[s[i]] = c[i], where the scatter s is defined by the `PetscSection` returned by `DMGetDefaultConstraints()`.
4441 
4442   If a constraint matrix is specified, then its adjoint is applied during `DMLocalToGlobalBegin()` when mode is `ADD_VALUES`, `ADD_BC_VALUES`, or `ADD_ALL_VALUES`.  Without a constraint matrix, the local vector l is accumulated into a global vector without modification; with a constraint matrix A, l is first modified by computing c[i] = l[s[i]], l[s[i]] = 0, l = l + A'*c, which is the adjoint of the operation described above.  Any bias, if specified, is ignored when accumulating.
4443 
4444   This increments the references of the `PetscSection`, `Mat`, and `Vec`, so they user can destroy them.
4445 
4446 .seealso: [](ch_dmbase), `DM`, `DMGetDefaultConstraints()`
4447 @*/
4448 PetscErrorCode DMSetDefaultConstraints(DM dm, PetscSection section, Mat mat, Vec bias)
4449 {
4450   PetscMPIInt result;
4451 
4452   PetscFunctionBegin;
4453   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
4454   if (section) {
4455     PetscValidHeaderSpecific(section, PETSC_SECTION_CLASSID, 2);
4456     PetscCallMPI(MPI_Comm_compare(PETSC_COMM_SELF, PetscObjectComm((PetscObject)section), &result));
4457     PetscCheck(result == MPI_CONGRUENT || result == MPI_IDENT, PETSC_COMM_SELF, PETSC_ERR_ARG_NOTSAMECOMM, "constraint section must have local communicator");
4458   }
4459   if (mat) {
4460     PetscValidHeaderSpecific(mat, MAT_CLASSID, 3);
4461     PetscCallMPI(MPI_Comm_compare(PETSC_COMM_SELF, PetscObjectComm((PetscObject)mat), &result));
4462     PetscCheck(result == MPI_CONGRUENT || result == MPI_IDENT, PETSC_COMM_SELF, PETSC_ERR_ARG_NOTSAMECOMM, "constraint matrix must have local communicator");
4463   }
4464   if (bias) {
4465     PetscValidHeaderSpecific(bias, VEC_CLASSID, 4);
4466     PetscCallMPI(MPI_Comm_compare(PETSC_COMM_SELF, PetscObjectComm((PetscObject)bias), &result));
4467     PetscCheck(result == MPI_CONGRUENT || result == MPI_IDENT, PETSC_COMM_SELF, PETSC_ERR_ARG_NOTSAMECOMM, "constraint bias must have local communicator");
4468   }
4469   PetscCall(PetscObjectReference((PetscObject)section));
4470   PetscCall(PetscSectionDestroy(&dm->defaultConstraint.section));
4471   dm->defaultConstraint.section = section;
4472   PetscCall(PetscObjectReference((PetscObject)mat));
4473   PetscCall(MatDestroy(&dm->defaultConstraint.mat));
4474   dm->defaultConstraint.mat = mat;
4475   PetscCall(PetscObjectReference((PetscObject)bias));
4476   PetscCall(VecDestroy(&dm->defaultConstraint.bias));
4477   dm->defaultConstraint.bias = bias;
4478   PetscFunctionReturn(PETSC_SUCCESS);
4479 }
4480 
4481 #if defined(PETSC_USE_DEBUG)
4482 /*
4483   DMDefaultSectionCheckConsistency - Check the consistentcy of the global and local sections. Generates and error if they are not consistent.
4484 
4485   Input Parameters:
4486 + dm - The `DM`
4487 . localSection - `PetscSection` describing the local data layout
4488 - globalSection - `PetscSection` describing the global data layout
4489 
4490   Level: intermediate
4491 
4492 .seealso: [](ch_dmbase), `DM`, `DMGetSectionSF()`, `DMSetSectionSF()`
4493 */
4494 static PetscErrorCode DMDefaultSectionCheckConsistency_Internal(DM dm, PetscSection localSection, PetscSection globalSection)
4495 {
4496   MPI_Comm        comm;
4497   PetscLayout     layout;
4498   const PetscInt *ranges;
4499   PetscInt        pStart, pEnd, p, nroots;
4500   PetscMPIInt     size, rank;
4501   PetscBool       valid = PETSC_TRUE, gvalid;
4502 
4503   PetscFunctionBegin;
4504   PetscCall(PetscObjectGetComm((PetscObject)dm, &comm));
4505   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
4506   PetscCallMPI(MPI_Comm_size(comm, &size));
4507   PetscCallMPI(MPI_Comm_rank(comm, &rank));
4508   PetscCall(PetscSectionGetChart(globalSection, &pStart, &pEnd));
4509   PetscCall(PetscSectionGetConstrainedStorageSize(globalSection, &nroots));
4510   PetscCall(PetscLayoutCreate(comm, &layout));
4511   PetscCall(PetscLayoutSetBlockSize(layout, 1));
4512   PetscCall(PetscLayoutSetLocalSize(layout, nroots));
4513   PetscCall(PetscLayoutSetUp(layout));
4514   PetscCall(PetscLayoutGetRanges(layout, &ranges));
4515   for (p = pStart; p < pEnd; ++p) {
4516     PetscInt dof, cdof, off, gdof, gcdof, goff, gsize, d;
4517 
4518     PetscCall(PetscSectionGetDof(localSection, p, &dof));
4519     PetscCall(PetscSectionGetOffset(localSection, p, &off));
4520     PetscCall(PetscSectionGetConstraintDof(localSection, p, &cdof));
4521     PetscCall(PetscSectionGetDof(globalSection, p, &gdof));
4522     PetscCall(PetscSectionGetConstraintDof(globalSection, p, &gcdof));
4523     PetscCall(PetscSectionGetOffset(globalSection, p, &goff));
4524     if (!gdof) continue; /* Censored point */
4525     if ((gdof < 0 ? -(gdof + 1) : gdof) != dof) {
4526       PetscCall(PetscSynchronizedPrintf(comm, "[%d]Global dof %" PetscInt_FMT " for point %" PetscInt_FMT " not equal to local dof %" PetscInt_FMT "\n", rank, gdof, p, dof));
4527       valid = PETSC_FALSE;
4528     }
4529     if (gcdof && (gcdof != cdof)) {
4530       PetscCall(PetscSynchronizedPrintf(comm, "[%d]Global constraints %" PetscInt_FMT " for point %" PetscInt_FMT " not equal to local constraints %" PetscInt_FMT "\n", rank, gcdof, p, cdof));
4531       valid = PETSC_FALSE;
4532     }
4533     if (gdof < 0) {
4534       gsize = gdof < 0 ? -(gdof + 1) - gcdof : gdof - gcdof;
4535       for (d = 0; d < gsize; ++d) {
4536         PetscInt offset = -(goff + 1) + d, r;
4537 
4538         PetscCall(PetscFindInt(offset, size + 1, ranges, &r));
4539         if (r < 0) r = -(r + 2);
4540         if ((r < 0) || (r >= size)) {
4541           PetscCall(PetscSynchronizedPrintf(comm, "[%d]Point %" PetscInt_FMT " mapped to invalid process %" PetscInt_FMT " (%" PetscInt_FMT ", %" PetscInt_FMT ")\n", rank, p, r, gdof, goff));
4542           valid = PETSC_FALSE;
4543           break;
4544         }
4545       }
4546     }
4547   }
4548   PetscCall(PetscLayoutDestroy(&layout));
4549   PetscCall(PetscSynchronizedFlush(comm, NULL));
4550   PetscCall(MPIU_Allreduce(&valid, &gvalid, 1, MPIU_BOOL, MPI_LAND, comm));
4551   if (!gvalid) {
4552     PetscCall(DMView(dm, NULL));
4553     SETERRQ(comm, PETSC_ERR_ARG_WRONG, "Inconsistent local and global sections");
4554   }
4555   PetscFunctionReturn(PETSC_SUCCESS);
4556 }
4557 #endif
4558 
4559 static PetscErrorCode DMGetIsoperiodicPointSF_Internal(DM dm, PetscSF *sf)
4560 {
4561   PetscErrorCode (*f)(DM, PetscSF *);
4562   PetscFunctionBegin;
4563   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
4564   PetscAssertPointer(sf, 2);
4565   PetscCall(PetscObjectQueryFunction((PetscObject)dm, "DMGetIsoperiodicPointSF_C", &f));
4566   if (f) PetscCall(f(dm, sf));
4567   else *sf = dm->sf;
4568   PetscFunctionReturn(PETSC_SUCCESS);
4569 }
4570 
4571 /*@
4572   DMGetGlobalSection - Get the `PetscSection` encoding the global data layout for the `DM`.
4573 
4574   Collective
4575 
4576   Input Parameter:
4577 . dm - The `DM`
4578 
4579   Output Parameter:
4580 . section - The `PetscSection`
4581 
4582   Level: intermediate
4583 
4584   Note:
4585   This gets a borrowed reference, so the user should not destroy this `PetscSection`.
4586 
4587 .seealso: [](ch_dmbase), `DM`, `DMSetLocalSection()`, `DMGetLocalSection()`
4588 @*/
4589 PetscErrorCode DMGetGlobalSection(DM dm, PetscSection *section)
4590 {
4591   PetscFunctionBegin;
4592   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
4593   PetscAssertPointer(section, 2);
4594   if (!dm->globalSection) {
4595     PetscSection s;
4596     PetscSF      sf;
4597 
4598     PetscCall(DMGetLocalSection(dm, &s));
4599     PetscCheck(s, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONGSTATE, "DM must have a default PetscSection in order to create a global PetscSection");
4600     PetscCheck(dm->sf, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONGSTATE, "DM must have a point PetscSF in order to create a global PetscSection");
4601     PetscCall(DMGetIsoperiodicPointSF_Internal(dm, &sf));
4602     PetscCall(PetscSectionCreateGlobalSection(s, sf, PETSC_TRUE, PETSC_FALSE, PETSC_FALSE, &dm->globalSection));
4603     PetscCall(PetscLayoutDestroy(&dm->map));
4604     PetscCall(PetscSectionGetValueLayout(PetscObjectComm((PetscObject)dm), dm->globalSection, &dm->map));
4605     PetscCall(PetscSectionViewFromOptions(dm->globalSection, NULL, "-global_section_view"));
4606   }
4607   *section = dm->globalSection;
4608   PetscFunctionReturn(PETSC_SUCCESS);
4609 }
4610 
4611 /*@
4612   DMSetGlobalSection - Set the `PetscSection` encoding the global data layout for the `DM`.
4613 
4614   Input Parameters:
4615 + dm      - The `DM`
4616 - section - The PetscSection, or `NULL`
4617 
4618   Level: intermediate
4619 
4620   Note:
4621   Any existing `PetscSection` will be destroyed
4622 
4623 .seealso: [](ch_dmbase), `DM`, `DMGetGlobalSection()`, `DMSetLocalSection()`
4624 @*/
4625 PetscErrorCode DMSetGlobalSection(DM dm, PetscSection section)
4626 {
4627   PetscFunctionBegin;
4628   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
4629   if (section) PetscValidHeaderSpecific(section, PETSC_SECTION_CLASSID, 2);
4630   PetscCall(PetscObjectReference((PetscObject)section));
4631   PetscCall(PetscSectionDestroy(&dm->globalSection));
4632   dm->globalSection = section;
4633 #if defined(PETSC_USE_DEBUG)
4634   if (section) PetscCall(DMDefaultSectionCheckConsistency_Internal(dm, dm->localSection, section));
4635 #endif
4636   /* Clear global scratch vectors and sectionSF */
4637   PetscCall(PetscSFDestroy(&dm->sectionSF));
4638   PetscCall(DMClearGlobalVectors(dm));
4639   PetscCall(DMClearNamedGlobalVectors(dm));
4640   PetscFunctionReturn(PETSC_SUCCESS);
4641 }
4642 
4643 /*@
4644   DMGetSectionSF - Get the `PetscSF` encoding the parallel dof overlap for the `DM`. If it has not been set,
4645   it is created from the default `PetscSection` layouts in the `DM`.
4646 
4647   Input Parameter:
4648 . dm - The `DM`
4649 
4650   Output Parameter:
4651 . sf - The `PetscSF`
4652 
4653   Level: intermediate
4654 
4655   Note:
4656   This gets a borrowed reference, so the user should not destroy this `PetscSF`.
4657 
4658 .seealso: [](ch_dmbase), `DM`, `DMSetSectionSF()`, `DMCreateSectionSF()`
4659 @*/
4660 PetscErrorCode DMGetSectionSF(DM dm, PetscSF *sf)
4661 {
4662   PetscInt nroots;
4663 
4664   PetscFunctionBegin;
4665   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
4666   PetscAssertPointer(sf, 2);
4667   if (!dm->sectionSF) PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)dm), &dm->sectionSF));
4668   PetscCall(PetscSFGetGraph(dm->sectionSF, &nroots, NULL, NULL, NULL));
4669   if (nroots < 0) {
4670     PetscSection section, gSection;
4671 
4672     PetscCall(DMGetLocalSection(dm, &section));
4673     if (section) {
4674       PetscCall(DMGetGlobalSection(dm, &gSection));
4675       PetscCall(DMCreateSectionSF(dm, section, gSection));
4676     } else {
4677       *sf = NULL;
4678       PetscFunctionReturn(PETSC_SUCCESS);
4679     }
4680   }
4681   *sf = dm->sectionSF;
4682   PetscFunctionReturn(PETSC_SUCCESS);
4683 }
4684 
4685 /*@
4686   DMSetSectionSF - Set the `PetscSF` encoding the parallel dof overlap for the `DM`
4687 
4688   Input Parameters:
4689 + dm - The `DM`
4690 - sf - The `PetscSF`
4691 
4692   Level: intermediate
4693 
4694   Note:
4695   Any previous `PetscSF` is destroyed
4696 
4697 .seealso: [](ch_dmbase), `DM`, `DMGetSectionSF()`, `DMCreateSectionSF()`
4698 @*/
4699 PetscErrorCode DMSetSectionSF(DM dm, PetscSF sf)
4700 {
4701   PetscFunctionBegin;
4702   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
4703   if (sf) PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 2);
4704   PetscCall(PetscObjectReference((PetscObject)sf));
4705   PetscCall(PetscSFDestroy(&dm->sectionSF));
4706   dm->sectionSF = sf;
4707   PetscFunctionReturn(PETSC_SUCCESS);
4708 }
4709 
4710 /*@C
4711   DMCreateSectionSF - Create the `PetscSF` encoding the parallel dof overlap for the `DM` based upon the `PetscSection`s
4712   describing the data layout.
4713 
4714   Input Parameters:
4715 + dm            - The `DM`
4716 . localSection  - `PetscSection` describing the local data layout
4717 - globalSection - `PetscSection` describing the global data layout
4718 
4719   Level: developer
4720 
4721   Note:
4722   One usually uses `DMGetSectionSF()` to obtain the `PetscSF`
4723 
4724   Developer Notes:
4725   Since this routine has for arguments the two sections from the `DM` and puts the resulting `PetscSF`
4726   directly into the `DM`, perhaps this function should not take the local and global sections as
4727   input and should just obtain them from the `DM`?
4728 
4729 .seealso: [](ch_dmbase), `DM`, `DMGetSectionSF()`, `DMSetSectionSF()`, `DMGetLocalSection()`, `DMGetGlobalSection()`
4730 @*/
4731 PetscErrorCode DMCreateSectionSF(DM dm, PetscSection localSection, PetscSection globalSection)
4732 {
4733   PetscFunctionBegin;
4734   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
4735   PetscCall(PetscSFSetGraphSection(dm->sectionSF, localSection, globalSection));
4736   PetscFunctionReturn(PETSC_SUCCESS);
4737 }
4738 
4739 /*@
4740   DMGetPointSF - Get the `PetscSF` encoding the parallel section point overlap for the `DM`.
4741 
4742   Not collective but the resulting `PetscSF` is collective
4743 
4744   Input Parameter:
4745 . dm - The `DM`
4746 
4747   Output Parameter:
4748 . sf - The `PetscSF`
4749 
4750   Level: intermediate
4751 
4752   Note:
4753   This gets a borrowed reference, so the user should not destroy this `PetscSF`.
4754 
4755 .seealso: [](ch_dmbase), `DM`, `DMSetPointSF()`, `DMGetSectionSF()`, `DMSetSectionSF()`, `DMCreateSectionSF()`
4756 @*/
4757 PetscErrorCode DMGetPointSF(DM dm, PetscSF *sf)
4758 {
4759   PetscFunctionBegin;
4760   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
4761   PetscAssertPointer(sf, 2);
4762   *sf = dm->sf;
4763   PetscFunctionReturn(PETSC_SUCCESS);
4764 }
4765 
4766 /*@
4767   DMSetPointSF - Set the `PetscSF` encoding the parallel section point overlap for the `DM`.
4768 
4769   Collective
4770 
4771   Input Parameters:
4772 + dm - The `DM`
4773 - sf - The `PetscSF`
4774 
4775   Level: intermediate
4776 
4777 .seealso: [](ch_dmbase), `DM`, `DMGetPointSF()`, `DMGetSectionSF()`, `DMSetSectionSF()`, `DMCreateSectionSF()`
4778 @*/
4779 PetscErrorCode DMSetPointSF(DM dm, PetscSF sf)
4780 {
4781   PetscFunctionBegin;
4782   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
4783   if (sf) PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 2);
4784   PetscCall(PetscObjectReference((PetscObject)sf));
4785   PetscCall(PetscSFDestroy(&dm->sf));
4786   dm->sf = sf;
4787   PetscFunctionReturn(PETSC_SUCCESS);
4788 }
4789 
4790 /*@
4791   DMGetNaturalSF - Get the `PetscSF` encoding the map back to the original mesh ordering
4792 
4793   Input Parameter:
4794 . dm - The `DM`
4795 
4796   Output Parameter:
4797 . sf - The `PetscSF`
4798 
4799   Level: intermediate
4800 
4801   Note:
4802   This gets a borrowed reference, so the user should not destroy this `PetscSF`.
4803 
4804 .seealso: [](ch_dmbase), `DM`, `DMSetNaturalSF()`, `DMSetUseNatural()`, `DMGetUseNatural()`, `DMPlexCreateGlobalToNaturalSF()`, `DMPlexDistribute()`
4805 @*/
4806 PetscErrorCode DMGetNaturalSF(DM dm, PetscSF *sf)
4807 {
4808   PetscFunctionBegin;
4809   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
4810   PetscAssertPointer(sf, 2);
4811   *sf = dm->sfNatural;
4812   PetscFunctionReturn(PETSC_SUCCESS);
4813 }
4814 
4815 /*@
4816   DMSetNaturalSF - Set the PetscSF encoding the map back to the original mesh ordering
4817 
4818   Input Parameters:
4819 + dm - The DM
4820 - sf - The PetscSF
4821 
4822   Level: intermediate
4823 
4824 .seealso: [](ch_dmbase), `DM`, `DMGetNaturalSF()`, `DMSetUseNatural()`, `DMGetUseNatural()`, `DMPlexCreateGlobalToNaturalSF()`, `DMPlexDistribute()`
4825 @*/
4826 PetscErrorCode DMSetNaturalSF(DM dm, PetscSF sf)
4827 {
4828   PetscFunctionBegin;
4829   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
4830   if (sf) PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 2);
4831   PetscCall(PetscObjectReference((PetscObject)sf));
4832   PetscCall(PetscSFDestroy(&dm->sfNatural));
4833   dm->sfNatural = sf;
4834   PetscFunctionReturn(PETSC_SUCCESS);
4835 }
4836 
4837 static PetscErrorCode DMSetDefaultAdjacency_Private(DM dm, PetscInt f, PetscObject disc)
4838 {
4839   PetscClassId id;
4840 
4841   PetscFunctionBegin;
4842   PetscCall(PetscObjectGetClassId(disc, &id));
4843   if (id == PETSCFE_CLASSID) {
4844     PetscCall(DMSetAdjacency(dm, f, PETSC_FALSE, PETSC_TRUE));
4845   } else if (id == PETSCFV_CLASSID) {
4846     PetscCall(DMSetAdjacency(dm, f, PETSC_TRUE, PETSC_FALSE));
4847   } else {
4848     PetscCall(DMSetAdjacency(dm, f, PETSC_FALSE, PETSC_TRUE));
4849   }
4850   PetscFunctionReturn(PETSC_SUCCESS);
4851 }
4852 
4853 static PetscErrorCode DMFieldEnlarge_Static(DM dm, PetscInt NfNew)
4854 {
4855   RegionField *tmpr;
4856   PetscInt     Nf = dm->Nf, f;
4857 
4858   PetscFunctionBegin;
4859   if (Nf >= NfNew) PetscFunctionReturn(PETSC_SUCCESS);
4860   PetscCall(PetscMalloc1(NfNew, &tmpr));
4861   for (f = 0; f < Nf; ++f) tmpr[f] = dm->fields[f];
4862   for (f = Nf; f < NfNew; ++f) {
4863     tmpr[f].disc        = NULL;
4864     tmpr[f].label       = NULL;
4865     tmpr[f].avoidTensor = PETSC_FALSE;
4866   }
4867   PetscCall(PetscFree(dm->fields));
4868   dm->Nf     = NfNew;
4869   dm->fields = tmpr;
4870   PetscFunctionReturn(PETSC_SUCCESS);
4871 }
4872 
4873 /*@
4874   DMClearFields - Remove all fields from the `DM`
4875 
4876   Logically Collective
4877 
4878   Input Parameter:
4879 . dm - The `DM`
4880 
4881   Level: intermediate
4882 
4883 .seealso: [](ch_dmbase), `DM`, `DMGetNumFields()`, `DMSetNumFields()`, `DMSetField()`
4884 @*/
4885 PetscErrorCode DMClearFields(DM dm)
4886 {
4887   PetscInt f;
4888 
4889   PetscFunctionBegin;
4890   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
4891   for (f = 0; f < dm->Nf; ++f) {
4892     PetscCall(PetscObjectDestroy(&dm->fields[f].disc));
4893     PetscCall(DMLabelDestroy(&dm->fields[f].label));
4894   }
4895   PetscCall(PetscFree(dm->fields));
4896   dm->fields = NULL;
4897   dm->Nf     = 0;
4898   PetscFunctionReturn(PETSC_SUCCESS);
4899 }
4900 
4901 /*@
4902   DMGetNumFields - Get the number of fields in the `DM`
4903 
4904   Not Collective
4905 
4906   Input Parameter:
4907 . dm - The `DM`
4908 
4909   Output Parameter:
4910 . numFields - The number of fields
4911 
4912   Level: intermediate
4913 
4914 .seealso: [](ch_dmbase), `DM`, `DMSetNumFields()`, `DMSetField()`
4915 @*/
4916 PetscErrorCode DMGetNumFields(DM dm, PetscInt *numFields)
4917 {
4918   PetscFunctionBegin;
4919   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
4920   PetscAssertPointer(numFields, 2);
4921   *numFields = dm->Nf;
4922   PetscFunctionReturn(PETSC_SUCCESS);
4923 }
4924 
4925 /*@
4926   DMSetNumFields - Set the number of fields in the `DM`
4927 
4928   Logically Collective
4929 
4930   Input Parameters:
4931 + dm        - The `DM`
4932 - numFields - The number of fields
4933 
4934   Level: intermediate
4935 
4936 .seealso: [](ch_dmbase), `DM`, `DMGetNumFields()`, `DMSetField()`
4937 @*/
4938 PetscErrorCode DMSetNumFields(DM dm, PetscInt numFields)
4939 {
4940   PetscInt Nf, f;
4941 
4942   PetscFunctionBegin;
4943   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
4944   PetscCall(DMGetNumFields(dm, &Nf));
4945   for (f = Nf; f < numFields; ++f) {
4946     PetscContainer obj;
4947 
4948     PetscCall(PetscContainerCreate(PetscObjectComm((PetscObject)dm), &obj));
4949     PetscCall(DMAddField(dm, NULL, (PetscObject)obj));
4950     PetscCall(PetscContainerDestroy(&obj));
4951   }
4952   PetscFunctionReturn(PETSC_SUCCESS);
4953 }
4954 
4955 /*@
4956   DMGetField - Return the `DMLabel` and discretization object for a given `DM` field
4957 
4958   Not Collective
4959 
4960   Input Parameters:
4961 + dm - The `DM`
4962 - f  - The field number
4963 
4964   Output Parameters:
4965 + label - The label indicating the support of the field, or `NULL` for the entire mesh (pass in `NULL` if not needed)
4966 - disc  - The discretization object (pass in `NULL` if not needed)
4967 
4968   Level: intermediate
4969 
4970 .seealso: [](ch_dmbase), `DM`, `DMAddField()`, `DMSetField()`
4971 @*/
4972 PetscErrorCode DMGetField(DM dm, PetscInt f, DMLabel *label, PetscObject *disc)
4973 {
4974   PetscFunctionBegin;
4975   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
4976   PetscAssertPointer(disc, 4);
4977   PetscCheck((f >= 0) && (f < dm->Nf), PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Field number %" PetscInt_FMT " must be in [0, %" PetscInt_FMT ")", f, dm->Nf);
4978   if (label) *label = dm->fields[f].label;
4979   if (disc) *disc = dm->fields[f].disc;
4980   PetscFunctionReturn(PETSC_SUCCESS);
4981 }
4982 
4983 /* Does not clear the DS */
4984 PetscErrorCode DMSetField_Internal(DM dm, PetscInt f, DMLabel label, PetscObject disc)
4985 {
4986   PetscFunctionBegin;
4987   PetscCall(DMFieldEnlarge_Static(dm, f + 1));
4988   PetscCall(DMLabelDestroy(&dm->fields[f].label));
4989   PetscCall(PetscObjectDestroy(&dm->fields[f].disc));
4990   dm->fields[f].label = label;
4991   dm->fields[f].disc  = disc;
4992   PetscCall(PetscObjectReference((PetscObject)label));
4993   PetscCall(PetscObjectReference((PetscObject)disc));
4994   PetscFunctionReturn(PETSC_SUCCESS);
4995 }
4996 
4997 /*@C
4998   DMSetField - Set the discretization object for a given `DM` field. Usually one would call `DMAddField()` which automatically handles
4999   the field numbering.
5000 
5001   Logically Collective
5002 
5003   Input Parameters:
5004 + dm    - The `DM`
5005 . f     - The field number
5006 . label - The label indicating the support of the field, or `NULL` for the entire mesh
5007 - disc  - The discretization object
5008 
5009   Level: intermediate
5010 
5011 .seealso: [](ch_dmbase), `DM`, `DMAddField()`, `DMGetField()`
5012 @*/
5013 PetscErrorCode DMSetField(DM dm, PetscInt f, DMLabel label, PetscObject disc)
5014 {
5015   PetscFunctionBegin;
5016   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
5017   if (label) PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 3);
5018   PetscValidHeader(disc, 4);
5019   PetscCheck(f >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Field number %" PetscInt_FMT " must be non-negative", f);
5020   PetscCall(DMSetField_Internal(dm, f, label, disc));
5021   PetscCall(DMSetDefaultAdjacency_Private(dm, f, disc));
5022   PetscCall(DMClearDS(dm));
5023   PetscFunctionReturn(PETSC_SUCCESS);
5024 }
5025 
5026 /*@C
5027   DMAddField - Add a field to a `DM` object. A field is a function space defined by of a set of discretization points (geometric entities)
5028   and a discretization object that defines the function space associated with those points.
5029 
5030   Logically Collective
5031 
5032   Input Parameters:
5033 + dm    - The `DM`
5034 . label - The label indicating the support of the field, or `NULL` for the entire mesh
5035 - disc  - The discretization object
5036 
5037   Level: intermediate
5038 
5039   Notes:
5040   The label already exists or will be added to the `DM` with `DMSetLabel()`.
5041 
5042   For example, a piecewise continuous pressure field can be defined by coefficients at the cell centers of a mesh and piecewise constant functions
5043   within each cell. Thus a specific function in the space is defined by the combination of a `Vec` containing the coefficients, a `DM` defining the
5044   geometry entities, a `DMLabel` indicating a subset of those geometric entities, and a discretization object, such as a `PetscFE`.
5045 
5046 .seealso: [](ch_dmbase), `DM`, `DMSetLabel()`, `DMSetField()`, `DMGetField()`, `PetscFE`
5047 @*/
5048 PetscErrorCode DMAddField(DM dm, DMLabel label, PetscObject disc)
5049 {
5050   PetscInt Nf = dm->Nf;
5051 
5052   PetscFunctionBegin;
5053   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
5054   if (label) PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 2);
5055   PetscValidHeader(disc, 3);
5056   PetscCall(DMFieldEnlarge_Static(dm, Nf + 1));
5057   dm->fields[Nf].label = label;
5058   dm->fields[Nf].disc  = disc;
5059   PetscCall(PetscObjectReference((PetscObject)label));
5060   PetscCall(PetscObjectReference((PetscObject)disc));
5061   PetscCall(DMSetDefaultAdjacency_Private(dm, Nf, disc));
5062   PetscCall(DMClearDS(dm));
5063   PetscFunctionReturn(PETSC_SUCCESS);
5064 }
5065 
5066 /*@
5067   DMSetFieldAvoidTensor - Set flag to avoid defining the field on tensor cells
5068 
5069   Logically Collective
5070 
5071   Input Parameters:
5072 + dm          - The `DM`
5073 . f           - The field index
5074 - avoidTensor - `PETSC_TRUE` to skip defining the field on tensor cells
5075 
5076   Level: intermediate
5077 
5078 .seealso: [](ch_dmbase), `DM`, `DMGetFieldAvoidTensor()`, `DMSetField()`, `DMGetField()`
5079 @*/
5080 PetscErrorCode DMSetFieldAvoidTensor(DM dm, PetscInt f, PetscBool avoidTensor)
5081 {
5082   PetscFunctionBegin;
5083   PetscCheck((f >= 0) && (f < dm->Nf), PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Field %" PetscInt_FMT " is not in [0, %" PetscInt_FMT ")", f, dm->Nf);
5084   dm->fields[f].avoidTensor = avoidTensor;
5085   PetscFunctionReturn(PETSC_SUCCESS);
5086 }
5087 
5088 /*@
5089   DMGetFieldAvoidTensor - Get flag to avoid defining the field on tensor cells
5090 
5091   Not Collective
5092 
5093   Input Parameters:
5094 + dm - The `DM`
5095 - f  - The field index
5096 
5097   Output Parameter:
5098 . avoidTensor - The flag to avoid defining the field on tensor cells
5099 
5100   Level: intermediate
5101 
5102 .seealso: [](ch_dmbase), `DM`, `DMAddField()`, `DMSetField()`, `DMGetField()`, `DMSetFieldAvoidTensor()`
5103 @*/
5104 PetscErrorCode DMGetFieldAvoidTensor(DM dm, PetscInt f, PetscBool *avoidTensor)
5105 {
5106   PetscFunctionBegin;
5107   PetscCheck((f >= 0) && (f < dm->Nf), PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Field %" PetscInt_FMT " is not in [0, %" PetscInt_FMT ")", f, dm->Nf);
5108   *avoidTensor = dm->fields[f].avoidTensor;
5109   PetscFunctionReturn(PETSC_SUCCESS);
5110 }
5111 
5112 /*@
5113   DMCopyFields - Copy the discretizations for the `DM` into another `DM`
5114 
5115   Collective
5116 
5117   Input Parameter:
5118 . dm - The `DM`
5119 
5120   Output Parameter:
5121 . newdm - The `DM`
5122 
5123   Level: advanced
5124 
5125 .seealso: [](ch_dmbase), `DM`, `DMGetField()`, `DMSetField()`, `DMAddField()`, `DMCopyDS()`, `DMGetDS()`, `DMGetCellDS()`
5126 @*/
5127 PetscErrorCode DMCopyFields(DM dm, DM newdm)
5128 {
5129   PetscInt Nf, f;
5130 
5131   PetscFunctionBegin;
5132   if (dm == newdm) PetscFunctionReturn(PETSC_SUCCESS);
5133   PetscCall(DMGetNumFields(dm, &Nf));
5134   PetscCall(DMClearFields(newdm));
5135   for (f = 0; f < Nf; ++f) {
5136     DMLabel     label;
5137     PetscObject field;
5138     PetscBool   useCone, useClosure;
5139 
5140     PetscCall(DMGetField(dm, f, &label, &field));
5141     PetscCall(DMSetField(newdm, f, label, field));
5142     PetscCall(DMGetAdjacency(dm, f, &useCone, &useClosure));
5143     PetscCall(DMSetAdjacency(newdm, f, useCone, useClosure));
5144   }
5145   PetscFunctionReturn(PETSC_SUCCESS);
5146 }
5147 
5148 /*@
5149   DMGetAdjacency - Returns the flags for determining variable influence
5150 
5151   Not Collective
5152 
5153   Input Parameters:
5154 + dm - The `DM` object
5155 - f  - The field number, or `PETSC_DEFAULT` for the default adjacency
5156 
5157   Output Parameters:
5158 + useCone    - Flag for variable influence starting with the cone operation
5159 - useClosure - Flag for variable influence using transitive closure
5160 
5161   Level: developer
5162 
5163   Notes:
5164 .vb
5165      FEM:   Two points p and q are adjacent if q \in closure(star(p)),   useCone = PETSC_FALSE, useClosure = PETSC_TRUE
5166      FVM:   Two points p and q are adjacent if q \in support(p+cone(p)), useCone = PETSC_TRUE,  useClosure = PETSC_FALSE
5167      FVM++: Two points p and q are adjacent if q \in star(closure(p)),   useCone = PETSC_TRUE,  useClosure = PETSC_TRUE
5168 .ve
5169   Further explanation can be found in the User's Manual Section on the Influence of Variables on One Another.
5170 
5171 .seealso: [](ch_dmbase), `DM`, `DMSetAdjacency()`, `DMGetField()`, `DMSetField()`
5172 @*/
5173 PetscErrorCode DMGetAdjacency(DM dm, PetscInt f, PetscBool *useCone, PetscBool *useClosure)
5174 {
5175   PetscFunctionBegin;
5176   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
5177   if (useCone) PetscAssertPointer(useCone, 3);
5178   if (useClosure) PetscAssertPointer(useClosure, 4);
5179   if (f < 0) {
5180     if (useCone) *useCone = dm->adjacency[0];
5181     if (useClosure) *useClosure = dm->adjacency[1];
5182   } else {
5183     PetscInt Nf;
5184 
5185     PetscCall(DMGetNumFields(dm, &Nf));
5186     PetscCheck(f < Nf, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Field number %" PetscInt_FMT " must be in [0, %" PetscInt_FMT ")", f, Nf);
5187     if (useCone) *useCone = dm->fields[f].adjacency[0];
5188     if (useClosure) *useClosure = dm->fields[f].adjacency[1];
5189   }
5190   PetscFunctionReturn(PETSC_SUCCESS);
5191 }
5192 
5193 /*@
5194   DMSetAdjacency - Set the flags for determining variable influence
5195 
5196   Not Collective
5197 
5198   Input Parameters:
5199 + dm         - The `DM` object
5200 . f          - The field number
5201 . useCone    - Flag for variable influence starting with the cone operation
5202 - useClosure - Flag for variable influence using transitive closure
5203 
5204   Level: developer
5205 
5206   Notes:
5207 .vb
5208      FEM:   Two points p and q are adjacent if q \in closure(star(p)),   useCone = PETSC_FALSE, useClosure = PETSC_TRUE
5209      FVM:   Two points p and q are adjacent if q \in support(p+cone(p)), useCone = PETSC_TRUE,  useClosure = PETSC_FALSE
5210      FVM++: Two points p and q are adjacent if q \in star(closure(p)),   useCone = PETSC_TRUE,  useClosure = PETSC_TRUE
5211 .ve
5212   Further explanation can be found in the User's Manual Section on the Influence of Variables on One Another.
5213 
5214 .seealso: [](ch_dmbase), `DM`, `DMGetAdjacency()`, `DMGetField()`, `DMSetField()`
5215 @*/
5216 PetscErrorCode DMSetAdjacency(DM dm, PetscInt f, PetscBool useCone, PetscBool useClosure)
5217 {
5218   PetscFunctionBegin;
5219   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
5220   if (f < 0) {
5221     dm->adjacency[0] = useCone;
5222     dm->adjacency[1] = useClosure;
5223   } else {
5224     PetscInt Nf;
5225 
5226     PetscCall(DMGetNumFields(dm, &Nf));
5227     PetscCheck(f < Nf, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Field number %" PetscInt_FMT " must be in [0, %" PetscInt_FMT ")", f, Nf);
5228     dm->fields[f].adjacency[0] = useCone;
5229     dm->fields[f].adjacency[1] = useClosure;
5230   }
5231   PetscFunctionReturn(PETSC_SUCCESS);
5232 }
5233 
5234 /*@
5235   DMGetBasicAdjacency - Returns the flags for determining variable influence, using either the default or field 0 if it is defined
5236 
5237   Not collective
5238 
5239   Input Parameter:
5240 . dm - The `DM` object
5241 
5242   Output Parameters:
5243 + useCone    - Flag for variable influence starting with the cone operation
5244 - useClosure - Flag for variable influence using transitive closure
5245 
5246   Level: developer
5247 
5248   Notes:
5249 .vb
5250      FEM:   Two points p and q are adjacent if q \in closure(star(p)),   useCone = PETSC_FALSE, useClosure = PETSC_TRUE
5251      FVM:   Two points p and q are adjacent if q \in support(p+cone(p)), useCone = PETSC_TRUE,  useClosure = PETSC_FALSE
5252      FVM++: Two points p and q are adjacent if q \in star(closure(p)),   useCone = PETSC_TRUE,  useClosure = PETSC_TRUE
5253 .ve
5254 
5255 .seealso: [](ch_dmbase), `DM`, `DMSetBasicAdjacency()`, `DMGetField()`, `DMSetField()`
5256 @*/
5257 PetscErrorCode DMGetBasicAdjacency(DM dm, PetscBool *useCone, PetscBool *useClosure)
5258 {
5259   PetscInt Nf;
5260 
5261   PetscFunctionBegin;
5262   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
5263   if (useCone) PetscAssertPointer(useCone, 2);
5264   if (useClosure) PetscAssertPointer(useClosure, 3);
5265   PetscCall(DMGetNumFields(dm, &Nf));
5266   if (!Nf) {
5267     PetscCall(DMGetAdjacency(dm, PETSC_DEFAULT, useCone, useClosure));
5268   } else {
5269     PetscCall(DMGetAdjacency(dm, 0, useCone, useClosure));
5270   }
5271   PetscFunctionReturn(PETSC_SUCCESS);
5272 }
5273 
5274 /*@
5275   DMSetBasicAdjacency - Set the flags for determining variable influence, using either the default or field 0 if it is defined
5276 
5277   Not Collective
5278 
5279   Input Parameters:
5280 + dm         - The `DM` object
5281 . useCone    - Flag for variable influence starting with the cone operation
5282 - useClosure - Flag for variable influence using transitive closure
5283 
5284   Level: developer
5285 
5286   Notes:
5287 .vb
5288      FEM:   Two points p and q are adjacent if q \in closure(star(p)),   useCone = PETSC_FALSE, useClosure = PETSC_TRUE
5289      FVM:   Two points p and q are adjacent if q \in support(p+cone(p)), useCone = PETSC_TRUE,  useClosure = PETSC_FALSE
5290      FVM++: Two points p and q are adjacent if q \in star(closure(p)),   useCone = PETSC_TRUE,  useClosure = PETSC_TRUE
5291 .ve
5292 
5293 .seealso: [](ch_dmbase), `DM`, `DMGetBasicAdjacency()`, `DMGetField()`, `DMSetField()`
5294 @*/
5295 PetscErrorCode DMSetBasicAdjacency(DM dm, PetscBool useCone, PetscBool useClosure)
5296 {
5297   PetscInt Nf;
5298 
5299   PetscFunctionBegin;
5300   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
5301   PetscCall(DMGetNumFields(dm, &Nf));
5302   if (!Nf) {
5303     PetscCall(DMSetAdjacency(dm, PETSC_DEFAULT, useCone, useClosure));
5304   } else {
5305     PetscCall(DMSetAdjacency(dm, 0, useCone, useClosure));
5306   }
5307   PetscFunctionReturn(PETSC_SUCCESS);
5308 }
5309 
5310 PetscErrorCode DMCompleteBCLabels_Internal(DM dm)
5311 {
5312   DM           plex;
5313   DMLabel     *labels, *glabels;
5314   const char **names;
5315   char        *sendNames, *recvNames;
5316   PetscInt     Nds, s, maxLabels = 0, maxLen = 0, gmaxLen, Nl = 0, gNl, l, gl, m;
5317   size_t       len;
5318   MPI_Comm     comm;
5319   PetscMPIInt  rank, size, p, *counts, *displs;
5320 
5321   PetscFunctionBegin;
5322   PetscCall(PetscObjectGetComm((PetscObject)dm, &comm));
5323   PetscCallMPI(MPI_Comm_size(comm, &size));
5324   PetscCallMPI(MPI_Comm_rank(comm, &rank));
5325   PetscCall(DMGetNumDS(dm, &Nds));
5326   for (s = 0; s < Nds; ++s) {
5327     PetscDS  dsBC;
5328     PetscInt numBd;
5329 
5330     PetscCall(DMGetRegionNumDS(dm, s, NULL, NULL, &dsBC, NULL));
5331     PetscCall(PetscDSGetNumBoundary(dsBC, &numBd));
5332     maxLabels += numBd;
5333   }
5334   PetscCall(PetscCalloc1(maxLabels, &labels));
5335   /* Get list of labels to be completed */
5336   for (s = 0; s < Nds; ++s) {
5337     PetscDS  dsBC;
5338     PetscInt numBd, bd;
5339 
5340     PetscCall(DMGetRegionNumDS(dm, s, NULL, NULL, &dsBC, NULL));
5341     PetscCall(PetscDSGetNumBoundary(dsBC, &numBd));
5342     for (bd = 0; bd < numBd; ++bd) {
5343       DMLabel      label;
5344       PetscInt     field;
5345       PetscObject  obj;
5346       PetscClassId id;
5347 
5348       PetscCall(PetscDSGetBoundary(dsBC, bd, NULL, NULL, NULL, &label, NULL, NULL, &field, NULL, NULL, NULL, NULL, NULL));
5349       PetscCall(DMGetField(dm, field, NULL, &obj));
5350       PetscCall(PetscObjectGetClassId(obj, &id));
5351       if (!(id == PETSCFE_CLASSID) || !label) continue;
5352       for (l = 0; l < Nl; ++l)
5353         if (labels[l] == label) break;
5354       if (l == Nl) labels[Nl++] = label;
5355     }
5356   }
5357   /* Get label names */
5358   PetscCall(PetscMalloc1(Nl, &names));
5359   for (l = 0; l < Nl; ++l) PetscCall(PetscObjectGetName((PetscObject)labels[l], &names[l]));
5360   for (l = 0; l < Nl; ++l) {
5361     PetscCall(PetscStrlen(names[l], &len));
5362     maxLen = PetscMax(maxLen, (PetscInt)len + 2);
5363   }
5364   PetscCall(PetscFree(labels));
5365   PetscCall(MPIU_Allreduce(&maxLen, &gmaxLen, 1, MPIU_INT, MPI_MAX, comm));
5366   PetscCall(PetscCalloc1(Nl * gmaxLen, &sendNames));
5367   for (l = 0; l < Nl; ++l) PetscCall(PetscStrncpy(&sendNames[gmaxLen * l], names[l], gmaxLen));
5368   PetscCall(PetscFree(names));
5369   /* Put all names on all processes */
5370   PetscCall(PetscCalloc2(size, &counts, size + 1, &displs));
5371   PetscCallMPI(MPI_Allgather(&Nl, 1, MPI_INT, counts, 1, MPI_INT, comm));
5372   for (p = 0; p < size; ++p) displs[p + 1] = displs[p] + counts[p];
5373   gNl = displs[size];
5374   for (p = 0; p < size; ++p) {
5375     counts[p] *= gmaxLen;
5376     displs[p] *= gmaxLen;
5377   }
5378   PetscCall(PetscCalloc2(gNl * gmaxLen, &recvNames, gNl, &glabels));
5379   PetscCallMPI(MPI_Allgatherv(sendNames, counts[rank], MPI_CHAR, recvNames, counts, displs, MPI_CHAR, comm));
5380   PetscCall(PetscFree2(counts, displs));
5381   PetscCall(PetscFree(sendNames));
5382   for (l = 0, gl = 0; l < gNl; ++l) {
5383     PetscCall(DMGetLabel(dm, &recvNames[l * gmaxLen], &glabels[gl]));
5384     PetscCheck(glabels[gl], PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Label %s missing on rank %d", &recvNames[l * gmaxLen], rank);
5385     for (m = 0; m < gl; ++m)
5386       if (glabels[m] == glabels[gl]) continue;
5387     PetscCall(DMConvert(dm, DMPLEX, &plex));
5388     PetscCall(DMPlexLabelComplete(plex, glabels[gl]));
5389     PetscCall(DMDestroy(&plex));
5390     ++gl;
5391   }
5392   PetscCall(PetscFree2(recvNames, glabels));
5393   PetscFunctionReturn(PETSC_SUCCESS);
5394 }
5395 
5396 static PetscErrorCode DMDSEnlarge_Static(DM dm, PetscInt NdsNew)
5397 {
5398   DMSpace *tmpd;
5399   PetscInt Nds = dm->Nds, s;
5400 
5401   PetscFunctionBegin;
5402   if (Nds >= NdsNew) PetscFunctionReturn(PETSC_SUCCESS);
5403   PetscCall(PetscMalloc1(NdsNew, &tmpd));
5404   for (s = 0; s < Nds; ++s) tmpd[s] = dm->probs[s];
5405   for (s = Nds; s < NdsNew; ++s) {
5406     tmpd[s].ds     = NULL;
5407     tmpd[s].label  = NULL;
5408     tmpd[s].fields = NULL;
5409   }
5410   PetscCall(PetscFree(dm->probs));
5411   dm->Nds   = NdsNew;
5412   dm->probs = tmpd;
5413   PetscFunctionReturn(PETSC_SUCCESS);
5414 }
5415 
5416 /*@
5417   DMGetNumDS - Get the number of discrete systems in the `DM`
5418 
5419   Not Collective
5420 
5421   Input Parameter:
5422 . dm - The `DM`
5423 
5424   Output Parameter:
5425 . Nds - The number of `PetscDS` objects
5426 
5427   Level: intermediate
5428 
5429 .seealso: [](ch_dmbase), `DM`, `DMGetDS()`, `DMGetCellDS()`
5430 @*/
5431 PetscErrorCode DMGetNumDS(DM dm, PetscInt *Nds)
5432 {
5433   PetscFunctionBegin;
5434   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
5435   PetscAssertPointer(Nds, 2);
5436   *Nds = dm->Nds;
5437   PetscFunctionReturn(PETSC_SUCCESS);
5438 }
5439 
5440 /*@
5441   DMClearDS - Remove all discrete systems from the `DM`
5442 
5443   Logically Collective
5444 
5445   Input Parameter:
5446 . dm - The `DM`
5447 
5448   Level: intermediate
5449 
5450 .seealso: [](ch_dmbase), `DM`, `DMGetNumDS()`, `DMGetDS()`, `DMSetField()`
5451 @*/
5452 PetscErrorCode DMClearDS(DM dm)
5453 {
5454   PetscInt s;
5455 
5456   PetscFunctionBegin;
5457   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
5458   for (s = 0; s < dm->Nds; ++s) {
5459     PetscCall(PetscDSDestroy(&dm->probs[s].ds));
5460     PetscCall(PetscDSDestroy(&dm->probs[s].dsIn));
5461     PetscCall(DMLabelDestroy(&dm->probs[s].label));
5462     PetscCall(ISDestroy(&dm->probs[s].fields));
5463   }
5464   PetscCall(PetscFree(dm->probs));
5465   dm->probs = NULL;
5466   dm->Nds   = 0;
5467   PetscFunctionReturn(PETSC_SUCCESS);
5468 }
5469 
5470 /*@
5471   DMGetDS - Get the default `PetscDS`
5472 
5473   Not Collective
5474 
5475   Input Parameter:
5476 . dm - The `DM`
5477 
5478   Output Parameter:
5479 . ds - The default `PetscDS`
5480 
5481   Level: intermediate
5482 
5483 .seealso: [](ch_dmbase), `DM`, `DMGetCellDS()`, `DMGetRegionDS()`
5484 @*/
5485 PetscErrorCode DMGetDS(DM dm, PetscDS *ds)
5486 {
5487   PetscFunctionBeginHot;
5488   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
5489   PetscAssertPointer(ds, 2);
5490   PetscCheck(dm->Nds > 0, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONGSTATE, "Need to call DMCreateDS() before calling DMGetDS()");
5491   *ds = dm->probs[0].ds;
5492   PetscFunctionReturn(PETSC_SUCCESS);
5493 }
5494 
5495 /*@
5496   DMGetCellDS - Get the `PetscDS` defined on a given cell
5497 
5498   Not Collective
5499 
5500   Input Parameters:
5501 + dm    - The `DM`
5502 - point - Cell for the `PetscDS`
5503 
5504   Output Parameters:
5505 + ds   - The `PetscDS` defined on the given cell
5506 - dsIn - The `PetscDS` for input on the given cell, or NULL if the same ds
5507 
5508   Level: developer
5509 
5510 .seealso: [](ch_dmbase), `DM`, `DMGetDS()`, `DMSetRegionDS()`
5511 @*/
5512 PetscErrorCode DMGetCellDS(DM dm, PetscInt point, PetscDS *ds, PetscDS *dsIn)
5513 {
5514   PetscDS  dsDef = NULL;
5515   PetscInt s;
5516 
5517   PetscFunctionBeginHot;
5518   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
5519   if (ds) PetscAssertPointer(ds, 3);
5520   if (dsIn) PetscAssertPointer(dsIn, 4);
5521   PetscCheck(point >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Mesh point cannot be negative: %" PetscInt_FMT, point);
5522   if (ds) *ds = NULL;
5523   if (dsIn) *dsIn = NULL;
5524   for (s = 0; s < dm->Nds; ++s) {
5525     PetscInt val;
5526 
5527     if (!dm->probs[s].label) {
5528       dsDef = dm->probs[s].ds;
5529     } else {
5530       PetscCall(DMLabelGetValue(dm->probs[s].label, point, &val));
5531       if (val >= 0) {
5532         if (ds) *ds = dm->probs[s].ds;
5533         if (dsIn) *dsIn = dm->probs[s].dsIn;
5534         break;
5535       }
5536     }
5537   }
5538   if (ds && !*ds) *ds = dsDef;
5539   PetscFunctionReturn(PETSC_SUCCESS);
5540 }
5541 
5542 /*@
5543   DMGetRegionDS - Get the `PetscDS` for a given mesh region, defined by a `DMLabel`
5544 
5545   Not Collective
5546 
5547   Input Parameters:
5548 + dm    - The `DM`
5549 - label - The `DMLabel` defining the mesh region, or `NULL` for the entire mesh
5550 
5551   Output Parameters:
5552 + fields - The `IS` containing the `DM` field numbers for the fields in this `PetscDS`, or `NULL`
5553 . ds     - The `PetscDS` defined on the given region, or `NULL`
5554 - dsIn   - The `PetscDS` for input in the given region, or `NULL`
5555 
5556   Level: advanced
5557 
5558   Note:
5559   If a non-`NULL` label is given, but there is no `PetscDS` on that specific label,
5560   the `PetscDS` for the full domain (if present) is returned. Returns with
5561   fields = `NULL` and ds = `NULL` if there is no `PetscDS` for the full domain.
5562 
5563 .seealso: [](ch_dmbase), `DM`, `DMGetRegionNumDS()`, `DMSetRegionDS()`, `DMGetDS()`, `DMGetCellDS()`
5564 @*/
5565 PetscErrorCode DMGetRegionDS(DM dm, DMLabel label, IS *fields, PetscDS *ds, PetscDS *dsIn)
5566 {
5567   PetscInt Nds = dm->Nds, s;
5568 
5569   PetscFunctionBegin;
5570   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
5571   if (label) PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 2);
5572   if (fields) {
5573     PetscAssertPointer(fields, 3);
5574     *fields = NULL;
5575   }
5576   if (ds) {
5577     PetscAssertPointer(ds, 4);
5578     *ds = NULL;
5579   }
5580   if (dsIn) {
5581     PetscAssertPointer(dsIn, 5);
5582     *dsIn = NULL;
5583   }
5584   for (s = 0; s < Nds; ++s) {
5585     if (dm->probs[s].label == label || !dm->probs[s].label) {
5586       if (fields) *fields = dm->probs[s].fields;
5587       if (ds) *ds = dm->probs[s].ds;
5588       if (dsIn) *dsIn = dm->probs[s].dsIn;
5589       if (dm->probs[s].label) PetscFunctionReturn(PETSC_SUCCESS);
5590     }
5591   }
5592   PetscFunctionReturn(PETSC_SUCCESS);
5593 }
5594 
5595 /*@
5596   DMSetRegionDS - Set the `PetscDS` for a given mesh region, defined by a `DMLabel`
5597 
5598   Collective
5599 
5600   Input Parameters:
5601 + dm     - The `DM`
5602 . label  - The `DMLabel` defining the mesh region, or `NULL` for the entire mesh
5603 . fields - The `IS` containing the `DM` field numbers for the fields in this `PetscDS`, or `NULL` for all fields
5604 . ds     - The `PetscDS` defined on the given region
5605 - dsIn   - The `PetscDS` for input on the given cell, or `NULL` if it is the same `PetscDS`
5606 
5607   Level: advanced
5608 
5609   Note:
5610   If the label has a `PetscDS` defined, it will be replaced. Otherwise, it will be added to the `DM`. If the `PetscDS` is replaced,
5611   the fields argument is ignored.
5612 
5613 .seealso: [](ch_dmbase), `DM`, `DMGetRegionDS()`, `DMSetRegionNumDS()`, `DMGetDS()`, `DMGetCellDS()`
5614 @*/
5615 PetscErrorCode DMSetRegionDS(DM dm, DMLabel label, IS fields, PetscDS ds, PetscDS dsIn)
5616 {
5617   PetscInt Nds = dm->Nds, s;
5618 
5619   PetscFunctionBegin;
5620   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
5621   if (label) PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 2);
5622   if (fields) PetscValidHeaderSpecific(fields, IS_CLASSID, 3);
5623   PetscValidHeaderSpecific(ds, PETSCDS_CLASSID, 4);
5624   if (dsIn) PetscValidHeaderSpecific(dsIn, PETSCDS_CLASSID, 5);
5625   for (s = 0; s < Nds; ++s) {
5626     if (dm->probs[s].label == label) {
5627       PetscCall(PetscDSDestroy(&dm->probs[s].ds));
5628       PetscCall(PetscDSDestroy(&dm->probs[s].dsIn));
5629       dm->probs[s].ds   = ds;
5630       dm->probs[s].dsIn = dsIn;
5631       PetscFunctionReturn(PETSC_SUCCESS);
5632     }
5633   }
5634   PetscCall(DMDSEnlarge_Static(dm, Nds + 1));
5635   PetscCall(PetscObjectReference((PetscObject)label));
5636   PetscCall(PetscObjectReference((PetscObject)fields));
5637   PetscCall(PetscObjectReference((PetscObject)ds));
5638   PetscCall(PetscObjectReference((PetscObject)dsIn));
5639   if (!label) {
5640     /* Put the NULL label at the front, so it is returned as the default */
5641     for (s = Nds - 1; s >= 0; --s) dm->probs[s + 1] = dm->probs[s];
5642     Nds = 0;
5643   }
5644   dm->probs[Nds].label  = label;
5645   dm->probs[Nds].fields = fields;
5646   dm->probs[Nds].ds     = ds;
5647   dm->probs[Nds].dsIn   = dsIn;
5648   PetscFunctionReturn(PETSC_SUCCESS);
5649 }
5650 
5651 /*@
5652   DMGetRegionNumDS - Get the `PetscDS` for a given mesh region, defined by the region number
5653 
5654   Not Collective
5655 
5656   Input Parameters:
5657 + dm  - The `DM`
5658 - num - The region number, in [0, Nds)
5659 
5660   Output Parameters:
5661 + label  - The region label, or `NULL`
5662 . fields - The `IS` containing the `DM` field numbers for the fields in this `PetscDS`, or `NULL`
5663 . ds     - The `PetscDS` defined on the given region, or `NULL`
5664 - dsIn   - The `PetscDS` for input in the given region, or `NULL`
5665 
5666   Level: advanced
5667 
5668 .seealso: [](ch_dmbase), `DM`, `DMGetRegionDS()`, `DMSetRegionDS()`, `DMGetDS()`, `DMGetCellDS()`
5669 @*/
5670 PetscErrorCode DMGetRegionNumDS(DM dm, PetscInt num, DMLabel *label, IS *fields, PetscDS *ds, PetscDS *dsIn)
5671 {
5672   PetscInt Nds;
5673 
5674   PetscFunctionBegin;
5675   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
5676   PetscCall(DMGetNumDS(dm, &Nds));
5677   PetscCheck((num >= 0) && (num < Nds), PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Region number %" PetscInt_FMT " is not in [0, %" PetscInt_FMT ")", num, Nds);
5678   if (label) {
5679     PetscAssertPointer(label, 3);
5680     *label = dm->probs[num].label;
5681   }
5682   if (fields) {
5683     PetscAssertPointer(fields, 4);
5684     *fields = dm->probs[num].fields;
5685   }
5686   if (ds) {
5687     PetscAssertPointer(ds, 5);
5688     *ds = dm->probs[num].ds;
5689   }
5690   if (dsIn) {
5691     PetscAssertPointer(dsIn, 6);
5692     *dsIn = dm->probs[num].dsIn;
5693   }
5694   PetscFunctionReturn(PETSC_SUCCESS);
5695 }
5696 
5697 /*@
5698   DMSetRegionNumDS - Set the `PetscDS` for a given mesh region, defined by the region number
5699 
5700   Not Collective
5701 
5702   Input Parameters:
5703 + dm     - The `DM`
5704 . num    - The region number, in [0, Nds)
5705 . label  - The region label, or `NULL`
5706 . fields - The `IS` containing the `DM` field numbers for the fields in this `PetscDS`, or `NULL` to prevent setting
5707 . ds     - The `PetscDS` defined on the given region, or `NULL` to prevent setting
5708 - dsIn   - The `PetscDS` for input on the given cell, or `NULL` if it is the same `PetscDS`
5709 
5710   Level: advanced
5711 
5712 .seealso: [](ch_dmbase), `DM`, `DMGetRegionDS()`, `DMSetRegionDS()`, `DMGetDS()`, `DMGetCellDS()`
5713 @*/
5714 PetscErrorCode DMSetRegionNumDS(DM dm, PetscInt num, DMLabel label, IS fields, PetscDS ds, PetscDS dsIn)
5715 {
5716   PetscInt Nds;
5717 
5718   PetscFunctionBegin;
5719   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
5720   if (label) PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 3);
5721   PetscCall(DMGetNumDS(dm, &Nds));
5722   PetscCheck((num >= 0) && (num < Nds), PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Region number %" PetscInt_FMT " is not in [0, %" PetscInt_FMT ")", num, Nds);
5723   PetscCall(PetscObjectReference((PetscObject)label));
5724   PetscCall(DMLabelDestroy(&dm->probs[num].label));
5725   dm->probs[num].label = label;
5726   if (fields) {
5727     PetscValidHeaderSpecific(fields, IS_CLASSID, 4);
5728     PetscCall(PetscObjectReference((PetscObject)fields));
5729     PetscCall(ISDestroy(&dm->probs[num].fields));
5730     dm->probs[num].fields = fields;
5731   }
5732   if (ds) {
5733     PetscValidHeaderSpecific(ds, PETSCDS_CLASSID, 5);
5734     PetscCall(PetscObjectReference((PetscObject)ds));
5735     PetscCall(PetscDSDestroy(&dm->probs[num].ds));
5736     dm->probs[num].ds = ds;
5737   }
5738   if (dsIn) {
5739     PetscValidHeaderSpecific(dsIn, PETSCDS_CLASSID, 6);
5740     PetscCall(PetscObjectReference((PetscObject)dsIn));
5741     PetscCall(PetscDSDestroy(&dm->probs[num].dsIn));
5742     dm->probs[num].dsIn = dsIn;
5743   }
5744   PetscFunctionReturn(PETSC_SUCCESS);
5745 }
5746 
5747 /*@
5748   DMFindRegionNum - Find the region number for a given `PetscDS`, or -1 if it is not found.
5749 
5750   Not Collective
5751 
5752   Input Parameters:
5753 + dm - The `DM`
5754 - ds - The `PetscDS` defined on the given region
5755 
5756   Output Parameter:
5757 . num - The region number, in [0, Nds), or -1 if not found
5758 
5759   Level: advanced
5760 
5761 .seealso: [](ch_dmbase), `DM`, `DMGetRegionNumDS()`, `DMGetRegionDS()`, `DMSetRegionDS()`, `DMGetDS()`, `DMGetCellDS()`
5762 @*/
5763 PetscErrorCode DMFindRegionNum(DM dm, PetscDS ds, PetscInt *num)
5764 {
5765   PetscInt Nds, n;
5766 
5767   PetscFunctionBegin;
5768   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
5769   PetscValidHeaderSpecific(ds, PETSCDS_CLASSID, 2);
5770   PetscAssertPointer(num, 3);
5771   PetscCall(DMGetNumDS(dm, &Nds));
5772   for (n = 0; n < Nds; ++n)
5773     if (ds == dm->probs[n].ds) break;
5774   if (n >= Nds) *num = -1;
5775   else *num = n;
5776   PetscFunctionReturn(PETSC_SUCCESS);
5777 }
5778 
5779 /*@C
5780   DMCreateFEDefault - Create a `PetscFE` based on the celltype for the mesh
5781 
5782   Not Collective
5783 
5784   Input Parameters:
5785 + dm     - The `DM`
5786 . Nc     - The number of components for the field
5787 . prefix - The options prefix for the output `PetscFE`, or `NULL`
5788 - qorder - The quadrature order or `PETSC_DETERMINE` to use `PetscSpace` polynomial degree
5789 
5790   Output Parameter:
5791 . fem - The `PetscFE`
5792 
5793   Level: intermediate
5794 
5795   Note:
5796   This is a convenience method that just calls `PetscFECreateByCell()` underneath.
5797 
5798 .seealso: [](ch_dmbase), `DM`, `PetscFECreateByCell()`, `DMAddField()`, `DMCreateDS()`, `DMGetCellDS()`, `DMGetRegionDS()`
5799 @*/
5800 PetscErrorCode DMCreateFEDefault(DM dm, PetscInt Nc, const char prefix[], PetscInt qorder, PetscFE *fem)
5801 {
5802   DMPolytopeType ct;
5803   PetscInt       dim, cStart;
5804 
5805   PetscFunctionBegin;
5806   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
5807   PetscValidLogicalCollectiveInt(dm, Nc, 2);
5808   if (prefix) PetscAssertPointer(prefix, 3);
5809   PetscValidLogicalCollectiveInt(dm, qorder, 4);
5810   PetscAssertPointer(fem, 5);
5811   PetscCall(DMGetDimension(dm, &dim));
5812   PetscCall(DMPlexGetHeightStratum(dm, 0, &cStart, NULL));
5813   PetscCall(DMPlexGetCellType(dm, cStart, &ct));
5814   PetscCall(PetscFECreateByCell(PETSC_COMM_SELF, dim, Nc, ct, prefix, qorder, fem));
5815   PetscFunctionReturn(PETSC_SUCCESS);
5816 }
5817 
5818 /*@
5819   DMCreateDS - Create the discrete systems for the `DM` based upon the fields added to the `DM`
5820 
5821   Collective
5822 
5823   Input Parameter:
5824 . dm - The `DM`
5825 
5826   Options Database Key:
5827 . -dm_petscds_view - View all the `PetscDS` objects in this `DM`
5828 
5829   Level: intermediate
5830 
5831 .seealso: [](ch_dmbase), `DM`, `DMSetField`, `DMAddField()`, `DMGetDS()`, `DMGetCellDS()`, `DMGetRegionDS()`, `DMSetRegionDS()`
5832 @*/
5833 PetscErrorCode DMCreateDS(DM dm)
5834 {
5835   MPI_Comm  comm;
5836   PetscDS   dsDef;
5837   DMLabel  *labelSet;
5838   PetscInt  dE, Nf = dm->Nf, f, s, Nl, l, Ndef, k;
5839   PetscBool doSetup = PETSC_TRUE, flg;
5840 
5841   PetscFunctionBegin;
5842   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
5843   if (!dm->fields) PetscFunctionReturn(PETSC_SUCCESS);
5844   PetscCall(PetscObjectGetComm((PetscObject)dm, &comm));
5845   PetscCall(DMGetCoordinateDim(dm, &dE));
5846   /* Determine how many regions we have */
5847   PetscCall(PetscMalloc1(Nf, &labelSet));
5848   Nl   = 0;
5849   Ndef = 0;
5850   for (f = 0; f < Nf; ++f) {
5851     DMLabel  label = dm->fields[f].label;
5852     PetscInt l;
5853 
5854 #ifdef PETSC_HAVE_LIBCEED
5855     /* Move CEED context to discretizations */
5856     {
5857       PetscClassId id;
5858 
5859       PetscCall(PetscObjectGetClassId(dm->fields[f].disc, &id));
5860       if (id == PETSCFE_CLASSID) {
5861         Ceed ceed;
5862 
5863         PetscCall(DMGetCeed(dm, &ceed));
5864         PetscCall(PetscFESetCeed((PetscFE)dm->fields[f].disc, ceed));
5865       }
5866     }
5867 #endif
5868     if (!label) {
5869       ++Ndef;
5870       continue;
5871     }
5872     for (l = 0; l < Nl; ++l)
5873       if (label == labelSet[l]) break;
5874     if (l < Nl) continue;
5875     labelSet[Nl++] = label;
5876   }
5877   /* Create default DS if there are no labels to intersect with */
5878   PetscCall(DMGetRegionDS(dm, NULL, NULL, &dsDef, NULL));
5879   if (!dsDef && Ndef && !Nl) {
5880     IS        fields;
5881     PetscInt *fld, nf;
5882 
5883     for (f = 0, nf = 0; f < Nf; ++f)
5884       if (!dm->fields[f].label) ++nf;
5885     PetscCheck(nf, comm, PETSC_ERR_PLIB, "All fields have labels, but we are trying to create a default DS");
5886     PetscCall(PetscMalloc1(nf, &fld));
5887     for (f = 0, nf = 0; f < Nf; ++f)
5888       if (!dm->fields[f].label) fld[nf++] = f;
5889     PetscCall(ISCreate(PETSC_COMM_SELF, &fields));
5890     PetscCall(PetscObjectSetOptionsPrefix((PetscObject)fields, "dm_fields_"));
5891     PetscCall(ISSetType(fields, ISGENERAL));
5892     PetscCall(ISGeneralSetIndices(fields, nf, fld, PETSC_OWN_POINTER));
5893 
5894     PetscCall(PetscDSCreate(PETSC_COMM_SELF, &dsDef));
5895     PetscCall(DMSetRegionDS(dm, NULL, fields, dsDef, NULL));
5896     PetscCall(PetscDSDestroy(&dsDef));
5897     PetscCall(ISDestroy(&fields));
5898   }
5899   PetscCall(DMGetRegionDS(dm, NULL, NULL, &dsDef, NULL));
5900   if (dsDef) PetscCall(PetscDSSetCoordinateDimension(dsDef, dE));
5901   /* Intersect labels with default fields */
5902   if (Ndef && Nl) {
5903     DM              plex;
5904     DMLabel         cellLabel;
5905     IS              fieldIS, allcellIS, defcellIS = NULL;
5906     PetscInt       *fields;
5907     const PetscInt *cells;
5908     PetscInt        depth, nf = 0, n, c;
5909 
5910     PetscCall(DMConvert(dm, DMPLEX, &plex));
5911     PetscCall(DMPlexGetDepth(plex, &depth));
5912     PetscCall(DMGetStratumIS(plex, "dim", depth, &allcellIS));
5913     if (!allcellIS) PetscCall(DMGetStratumIS(plex, "depth", depth, &allcellIS));
5914     /* TODO This looks like it only works for one label */
5915     for (l = 0; l < Nl; ++l) {
5916       DMLabel label = labelSet[l];
5917       IS      pointIS;
5918 
5919       PetscCall(ISDestroy(&defcellIS));
5920       PetscCall(DMLabelGetStratumIS(label, 1, &pointIS));
5921       PetscCall(ISDifference(allcellIS, pointIS, &defcellIS));
5922       PetscCall(ISDestroy(&pointIS));
5923     }
5924     PetscCall(ISDestroy(&allcellIS));
5925 
5926     PetscCall(DMLabelCreate(PETSC_COMM_SELF, "defaultCells", &cellLabel));
5927     PetscCall(ISGetLocalSize(defcellIS, &n));
5928     PetscCall(ISGetIndices(defcellIS, &cells));
5929     for (c = 0; c < n; ++c) PetscCall(DMLabelSetValue(cellLabel, cells[c], 1));
5930     PetscCall(ISRestoreIndices(defcellIS, &cells));
5931     PetscCall(ISDestroy(&defcellIS));
5932     PetscCall(DMPlexLabelComplete(plex, cellLabel));
5933 
5934     PetscCall(PetscMalloc1(Ndef, &fields));
5935     for (f = 0; f < Nf; ++f)
5936       if (!dm->fields[f].label) fields[nf++] = f;
5937     PetscCall(ISCreate(PETSC_COMM_SELF, &fieldIS));
5938     PetscCall(PetscObjectSetOptionsPrefix((PetscObject)fieldIS, "dm_fields_"));
5939     PetscCall(ISSetType(fieldIS, ISGENERAL));
5940     PetscCall(ISGeneralSetIndices(fieldIS, nf, fields, PETSC_OWN_POINTER));
5941 
5942     PetscCall(PetscDSCreate(PETSC_COMM_SELF, &dsDef));
5943     PetscCall(DMSetRegionDS(dm, cellLabel, fieldIS, dsDef, NULL));
5944     PetscCall(PetscDSSetCoordinateDimension(dsDef, dE));
5945     PetscCall(DMLabelDestroy(&cellLabel));
5946     PetscCall(PetscDSDestroy(&dsDef));
5947     PetscCall(ISDestroy(&fieldIS));
5948     PetscCall(DMDestroy(&plex));
5949   }
5950   /* Create label DSes
5951      - WE ONLY SUPPORT IDENTICAL OR DISJOINT LABELS
5952   */
5953   /* TODO Should check that labels are disjoint */
5954   for (l = 0; l < Nl; ++l) {
5955     DMLabel   label = labelSet[l];
5956     PetscDS   ds, dsIn = NULL;
5957     IS        fields;
5958     PetscInt *fld, nf;
5959 
5960     PetscCall(PetscDSCreate(PETSC_COMM_SELF, &ds));
5961     for (f = 0, nf = 0; f < Nf; ++f)
5962       if (label == dm->fields[f].label || !dm->fields[f].label) ++nf;
5963     PetscCall(PetscMalloc1(nf, &fld));
5964     for (f = 0, nf = 0; f < Nf; ++f)
5965       if (label == dm->fields[f].label || !dm->fields[f].label) fld[nf++] = f;
5966     PetscCall(ISCreate(PETSC_COMM_SELF, &fields));
5967     PetscCall(PetscObjectSetOptionsPrefix((PetscObject)fields, "dm_fields_"));
5968     PetscCall(ISSetType(fields, ISGENERAL));
5969     PetscCall(ISGeneralSetIndices(fields, nf, fld, PETSC_OWN_POINTER));
5970     PetscCall(PetscDSSetCoordinateDimension(ds, dE));
5971     {
5972       DMPolytopeType ct;
5973       PetscInt       lStart, lEnd;
5974       PetscBool      isCohesiveLocal = PETSC_FALSE, isCohesive;
5975 
5976       PetscCall(DMLabelGetBounds(label, &lStart, &lEnd));
5977       if (lStart >= 0) {
5978         PetscCall(DMPlexGetCellType(dm, lStart, &ct));
5979         switch (ct) {
5980         case DM_POLYTOPE_POINT_PRISM_TENSOR:
5981         case DM_POLYTOPE_SEG_PRISM_TENSOR:
5982         case DM_POLYTOPE_TRI_PRISM_TENSOR:
5983         case DM_POLYTOPE_QUAD_PRISM_TENSOR:
5984           isCohesiveLocal = PETSC_TRUE;
5985           break;
5986         default:
5987           break;
5988         }
5989       }
5990       PetscCall(MPIU_Allreduce(&isCohesiveLocal, &isCohesive, 1, MPIU_BOOL, MPI_LOR, comm));
5991       if (isCohesive) {
5992         PetscCall(PetscDSCreate(PETSC_COMM_SELF, &dsIn));
5993         PetscCall(PetscDSSetCoordinateDimension(dsIn, dE));
5994       }
5995       for (f = 0, nf = 0; f < Nf; ++f) {
5996         if (label == dm->fields[f].label || !dm->fields[f].label) {
5997           if (label == dm->fields[f].label) {
5998             PetscCall(PetscDSSetDiscretization(ds, nf, NULL));
5999             PetscCall(PetscDSSetCohesive(ds, nf, isCohesive));
6000             if (dsIn) {
6001               PetscCall(PetscDSSetDiscretization(dsIn, nf, NULL));
6002               PetscCall(PetscDSSetCohesive(dsIn, nf, isCohesive));
6003             }
6004           }
6005           ++nf;
6006         }
6007       }
6008     }
6009     PetscCall(DMSetRegionDS(dm, label, fields, ds, dsIn));
6010     PetscCall(ISDestroy(&fields));
6011     PetscCall(PetscDSDestroy(&ds));
6012     PetscCall(PetscDSDestroy(&dsIn));
6013   }
6014   PetscCall(PetscFree(labelSet));
6015   /* Set fields in DSes */
6016   for (s = 0; s < dm->Nds; ++s) {
6017     PetscDS         ds     = dm->probs[s].ds;
6018     PetscDS         dsIn   = dm->probs[s].dsIn;
6019     IS              fields = dm->probs[s].fields;
6020     const PetscInt *fld;
6021     PetscInt        nf, dsnf;
6022     PetscBool       isCohesive;
6023 
6024     PetscCall(PetscDSGetNumFields(ds, &dsnf));
6025     PetscCall(PetscDSIsCohesive(ds, &isCohesive));
6026     PetscCall(ISGetLocalSize(fields, &nf));
6027     PetscCall(ISGetIndices(fields, &fld));
6028     for (f = 0; f < nf; ++f) {
6029       PetscObject  disc = dm->fields[fld[f]].disc;
6030       PetscBool    isCohesiveField;
6031       PetscClassId id;
6032 
6033       /* Handle DS with no fields */
6034       if (dsnf) PetscCall(PetscDSGetCohesive(ds, f, &isCohesiveField));
6035       /* If this is a cohesive cell, then regular fields need the lower dimensional discretization */
6036       if (isCohesive) {
6037         if (!isCohesiveField) {
6038           PetscObject bdDisc;
6039 
6040           PetscCall(PetscFEGetHeightSubspace((PetscFE)disc, 1, (PetscFE *)&bdDisc));
6041           PetscCall(PetscDSSetDiscretization(ds, f, bdDisc));
6042           PetscCall(PetscDSSetDiscretization(dsIn, f, disc));
6043         } else {
6044           PetscCall(PetscDSSetDiscretization(ds, f, disc));
6045           PetscCall(PetscDSSetDiscretization(dsIn, f, disc));
6046         }
6047       } else {
6048         PetscCall(PetscDSSetDiscretization(ds, f, disc));
6049       }
6050       /* We allow people to have placeholder fields and construct the Section by hand */
6051       PetscCall(PetscObjectGetClassId(disc, &id));
6052       if ((id != PETSCFE_CLASSID) && (id != PETSCFV_CLASSID)) doSetup = PETSC_FALSE;
6053     }
6054     PetscCall(ISRestoreIndices(fields, &fld));
6055   }
6056   /* Allow k-jet tabulation */
6057   PetscCall(PetscOptionsGetInt(NULL, ((PetscObject)dm)->prefix, "-dm_ds_jet_degree", &k, &flg));
6058   if (flg) {
6059     for (s = 0; s < dm->Nds; ++s) {
6060       PetscDS  ds   = dm->probs[s].ds;
6061       PetscDS  dsIn = dm->probs[s].dsIn;
6062       PetscInt Nf, f;
6063 
6064       PetscCall(PetscDSGetNumFields(ds, &Nf));
6065       for (f = 0; f < Nf; ++f) {
6066         PetscCall(PetscDSSetJetDegree(ds, f, k));
6067         if (dsIn) PetscCall(PetscDSSetJetDegree(dsIn, f, k));
6068       }
6069     }
6070   }
6071   /* Setup DSes */
6072   if (doSetup) {
6073     for (s = 0; s < dm->Nds; ++s) {
6074       if (dm->setfromoptionscalled) {
6075         PetscCall(PetscDSSetFromOptions(dm->probs[s].ds));
6076         if (dm->probs[s].dsIn) PetscCall(PetscDSSetFromOptions(dm->probs[s].dsIn));
6077       }
6078       PetscCall(PetscDSSetUp(dm->probs[s].ds));
6079       if (dm->probs[s].dsIn) PetscCall(PetscDSSetUp(dm->probs[s].dsIn));
6080     }
6081   }
6082   PetscFunctionReturn(PETSC_SUCCESS);
6083 }
6084 
6085 /*@
6086   DMUseTensorOrder - Use a tensor product closure ordering for the default section
6087 
6088   Input Parameters:
6089 + dm     - The DM
6090 - tensor - Flag for tensor order
6091 
6092   Level: developer
6093 
6094 .seealso: `DMPlexSetClosurePermutationTensor()`, `PetscSectionResetClosurePermutation()`
6095 @*/
6096 PetscErrorCode DMUseTensorOrder(DM dm, PetscBool tensor)
6097 {
6098   PetscInt  Nf;
6099   PetscBool reorder = PETSC_TRUE, isPlex;
6100 
6101   PetscFunctionBegin;
6102   PetscCall(PetscObjectTypeCompare((PetscObject)dm, DMPLEX, &isPlex));
6103   PetscCall(DMGetNumFields(dm, &Nf));
6104   for (PetscInt f = 0; f < Nf; ++f) {
6105     PetscObject  obj;
6106     PetscClassId id;
6107 
6108     PetscCall(DMGetField(dm, f, NULL, &obj));
6109     PetscCall(PetscObjectGetClassId(obj, &id));
6110     if (id == PETSCFE_CLASSID) {
6111       PetscSpace sp;
6112       PetscBool  tensor;
6113 
6114       PetscCall(PetscFEGetBasisSpace((PetscFE)obj, &sp));
6115       PetscCall(PetscSpacePolynomialGetTensor(sp, &tensor));
6116       reorder = reorder && tensor ? PETSC_TRUE : PETSC_FALSE;
6117     } else reorder = PETSC_FALSE;
6118   }
6119   if (tensor) {
6120     if (reorder && isPlex) PetscCall(DMPlexSetClosurePermutationTensor(dm, PETSC_DETERMINE, NULL));
6121   } else {
6122     PetscSection s;
6123 
6124     PetscCall(DMGetLocalSection(dm, &s));
6125     if (s) PetscCall(PetscSectionResetClosurePermutation(s));
6126   }
6127   PetscFunctionReturn(PETSC_SUCCESS);
6128 }
6129 
6130 /*@
6131   DMComputeExactSolution - Compute the exact solution for a given `DM`, using the `PetscDS` information.
6132 
6133   Collective
6134 
6135   Input Parameters:
6136 + dm   - The `DM`
6137 - time - The time
6138 
6139   Output Parameters:
6140 + u   - The vector will be filled with exact solution values, or `NULL`
6141 - u_t - The vector will be filled with the time derivative of exact solution values, or `NULL`
6142 
6143   Level: developer
6144 
6145   Note:
6146   The user must call `PetscDSSetExactSolution()` before using this routine
6147 
6148 .seealso: [](ch_dmbase), `DM`, `PetscDSSetExactSolution()`
6149 @*/
6150 PetscErrorCode DMComputeExactSolution(DM dm, PetscReal time, Vec u, Vec u_t)
6151 {
6152   PetscErrorCode (**exacts)(PetscInt, PetscReal, const PetscReal x[], PetscInt, PetscScalar *u, void *ctx);
6153   void   **ectxs;
6154   Vec      locu, locu_t;
6155   PetscInt Nf, Nds, s;
6156 
6157   PetscFunctionBegin;
6158   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
6159   if (u) {
6160     PetscValidHeaderSpecific(u, VEC_CLASSID, 3);
6161     PetscCall(DMGetLocalVector(dm, &locu));
6162     PetscCall(VecSet(locu, 0.));
6163   }
6164   if (u_t) {
6165     PetscValidHeaderSpecific(u_t, VEC_CLASSID, 4);
6166     PetscCall(DMGetLocalVector(dm, &locu_t));
6167     PetscCall(VecSet(locu_t, 0.));
6168   }
6169   PetscCall(DMGetNumFields(dm, &Nf));
6170   PetscCall(PetscMalloc2(Nf, &exacts, Nf, &ectxs));
6171   PetscCall(DMGetNumDS(dm, &Nds));
6172   for (s = 0; s < Nds; ++s) {
6173     PetscDS         ds;
6174     DMLabel         label;
6175     IS              fieldIS;
6176     const PetscInt *fields, id = 1;
6177     PetscInt        dsNf, f;
6178 
6179     PetscCall(DMGetRegionNumDS(dm, s, &label, &fieldIS, &ds, NULL));
6180     PetscCall(PetscDSGetNumFields(ds, &dsNf));
6181     PetscCall(ISGetIndices(fieldIS, &fields));
6182     PetscCall(PetscArrayzero(exacts, Nf));
6183     PetscCall(PetscArrayzero(ectxs, Nf));
6184     if (u) {
6185       for (f = 0; f < dsNf; ++f) PetscCall(PetscDSGetExactSolution(ds, fields[f], &exacts[fields[f]], &ectxs[fields[f]]));
6186       if (label) PetscCall(DMProjectFunctionLabelLocal(dm, time, label, 1, &id, 0, NULL, exacts, ectxs, INSERT_ALL_VALUES, locu));
6187       else PetscCall(DMProjectFunctionLocal(dm, time, exacts, ectxs, INSERT_ALL_VALUES, locu));
6188     }
6189     if (u_t) {
6190       PetscCall(PetscArrayzero(exacts, Nf));
6191       PetscCall(PetscArrayzero(ectxs, Nf));
6192       for (f = 0; f < dsNf; ++f) PetscCall(PetscDSGetExactSolutionTimeDerivative(ds, fields[f], &exacts[fields[f]], &ectxs[fields[f]]));
6193       if (label) PetscCall(DMProjectFunctionLabelLocal(dm, time, label, 1, &id, 0, NULL, exacts, ectxs, INSERT_ALL_VALUES, locu_t));
6194       else PetscCall(DMProjectFunctionLocal(dm, time, exacts, ectxs, INSERT_ALL_VALUES, locu_t));
6195     }
6196     PetscCall(ISRestoreIndices(fieldIS, &fields));
6197   }
6198   if (u) {
6199     PetscCall(PetscObjectSetName((PetscObject)u, "Exact Solution"));
6200     PetscCall(PetscObjectSetOptionsPrefix((PetscObject)u, "exact_"));
6201   }
6202   if (u_t) {
6203     PetscCall(PetscObjectSetName((PetscObject)u, "Exact Solution Time Derivative"));
6204     PetscCall(PetscObjectSetOptionsPrefix((PetscObject)u_t, "exact_t_"));
6205   }
6206   PetscCall(PetscFree2(exacts, ectxs));
6207   if (u) {
6208     PetscCall(DMLocalToGlobalBegin(dm, locu, INSERT_ALL_VALUES, u));
6209     PetscCall(DMLocalToGlobalEnd(dm, locu, INSERT_ALL_VALUES, u));
6210     PetscCall(DMRestoreLocalVector(dm, &locu));
6211   }
6212   if (u_t) {
6213     PetscCall(DMLocalToGlobalBegin(dm, locu_t, INSERT_ALL_VALUES, u_t));
6214     PetscCall(DMLocalToGlobalEnd(dm, locu_t, INSERT_ALL_VALUES, u_t));
6215     PetscCall(DMRestoreLocalVector(dm, &locu_t));
6216   }
6217   PetscFunctionReturn(PETSC_SUCCESS);
6218 }
6219 
6220 static PetscErrorCode DMTransferDS_Internal(DM dm, DMLabel label, IS fields, PetscDS ds, PetscDS dsIn)
6221 {
6222   PetscDS dsNew, dsInNew = NULL;
6223 
6224   PetscFunctionBegin;
6225   PetscCall(PetscDSCreate(PetscObjectComm((PetscObject)ds), &dsNew));
6226   PetscCall(PetscDSCopy(ds, dm, dsNew));
6227   if (dsIn) {
6228     PetscCall(PetscDSCreate(PetscObjectComm((PetscObject)dsIn), &dsInNew));
6229     PetscCall(PetscDSCopy(dsIn, dm, dsInNew));
6230   }
6231   PetscCall(DMSetRegionDS(dm, label, fields, dsNew, dsInNew));
6232   PetscCall(PetscDSDestroy(&dsNew));
6233   PetscCall(PetscDSDestroy(&dsInNew));
6234   PetscFunctionReturn(PETSC_SUCCESS);
6235 }
6236 
6237 /*@
6238   DMCopyDS - Copy the discrete systems for the `DM` into another `DM`
6239 
6240   Collective
6241 
6242   Input Parameter:
6243 . dm - The `DM`
6244 
6245   Output Parameter:
6246 . newdm - The `DM`
6247 
6248   Level: advanced
6249 
6250 .seealso: [](ch_dmbase), `DM`, `DMCopyFields()`, `DMAddField()`, `DMGetDS()`, `DMGetCellDS()`, `DMGetRegionDS()`, `DMSetRegionDS()`
6251 @*/
6252 PetscErrorCode DMCopyDS(DM dm, DM newdm)
6253 {
6254   PetscInt Nds, s;
6255 
6256   PetscFunctionBegin;
6257   if (dm == newdm) PetscFunctionReturn(PETSC_SUCCESS);
6258   PetscCall(DMGetNumDS(dm, &Nds));
6259   PetscCall(DMClearDS(newdm));
6260   for (s = 0; s < Nds; ++s) {
6261     DMLabel  label;
6262     IS       fields;
6263     PetscDS  ds, dsIn, newds;
6264     PetscInt Nbd, bd;
6265 
6266     PetscCall(DMGetRegionNumDS(dm, s, &label, &fields, &ds, &dsIn));
6267     /* TODO: We need to change all keys from labels in the old DM to labels in the new DM */
6268     PetscCall(DMTransferDS_Internal(newdm, label, fields, ds, dsIn));
6269     /* Complete new labels in the new DS */
6270     PetscCall(DMGetRegionDS(newdm, label, NULL, &newds, NULL));
6271     PetscCall(PetscDSGetNumBoundary(newds, &Nbd));
6272     for (bd = 0; bd < Nbd; ++bd) {
6273       PetscWeakForm wf;
6274       DMLabel       label;
6275       PetscInt      field;
6276 
6277       PetscCall(PetscDSGetBoundary(newds, bd, &wf, NULL, NULL, &label, NULL, NULL, &field, NULL, NULL, NULL, NULL, NULL));
6278       PetscCall(PetscWeakFormReplaceLabel(wf, label));
6279     }
6280   }
6281   PetscCall(DMCompleteBCLabels_Internal(newdm));
6282   PetscFunctionReturn(PETSC_SUCCESS);
6283 }
6284 
6285 /*@
6286   DMCopyDisc - Copy the fields and discrete systems for the `DM` into another `DM`
6287 
6288   Collective
6289 
6290   Input Parameter:
6291 . dm - The `DM`
6292 
6293   Output Parameter:
6294 . newdm - The `DM`
6295 
6296   Level: advanced
6297 
6298   Developer Notes:
6299   Really ugly name, nothing in PETSc is called a `Disc` plus it is an ugly abbreviation
6300 
6301 .seealso: [](ch_dmbase), `DM`, `DMCopyFields()`, `DMCopyDS()`
6302 @*/
6303 PetscErrorCode DMCopyDisc(DM dm, DM newdm)
6304 {
6305   PetscFunctionBegin;
6306   PetscCall(DMCopyFields(dm, newdm));
6307   PetscCall(DMCopyDS(dm, newdm));
6308   PetscFunctionReturn(PETSC_SUCCESS);
6309 }
6310 
6311 /*@
6312   DMGetDimension - Return the topological dimension of the `DM`
6313 
6314   Not Collective
6315 
6316   Input Parameter:
6317 . dm - The `DM`
6318 
6319   Output Parameter:
6320 . dim - The topological dimension
6321 
6322   Level: beginner
6323 
6324 .seealso: [](ch_dmbase), `DM`, `DMSetDimension()`, `DMCreate()`
6325 @*/
6326 PetscErrorCode DMGetDimension(DM dm, PetscInt *dim)
6327 {
6328   PetscFunctionBegin;
6329   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
6330   PetscAssertPointer(dim, 2);
6331   *dim = dm->dim;
6332   PetscFunctionReturn(PETSC_SUCCESS);
6333 }
6334 
6335 /*@
6336   DMSetDimension - Set the topological dimension of the `DM`
6337 
6338   Collective
6339 
6340   Input Parameters:
6341 + dm  - The `DM`
6342 - dim - The topological dimension
6343 
6344   Level: beginner
6345 
6346 .seealso: [](ch_dmbase), `DM`, `DMGetDimension()`, `DMCreate()`
6347 @*/
6348 PetscErrorCode DMSetDimension(DM dm, PetscInt dim)
6349 {
6350   PetscDS  ds;
6351   PetscInt Nds, n;
6352 
6353   PetscFunctionBegin;
6354   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
6355   PetscValidLogicalCollectiveInt(dm, dim, 2);
6356   dm->dim = dim;
6357   if (dm->dim >= 0) {
6358     PetscCall(DMGetNumDS(dm, &Nds));
6359     for (n = 0; n < Nds; ++n) {
6360       PetscCall(DMGetRegionNumDS(dm, n, NULL, NULL, &ds, NULL));
6361       if (ds->dimEmbed < 0) PetscCall(PetscDSSetCoordinateDimension(ds, dim));
6362     }
6363   }
6364   PetscFunctionReturn(PETSC_SUCCESS);
6365 }
6366 
6367 /*@
6368   DMGetDimPoints - Get the half-open interval for all points of a given dimension
6369 
6370   Collective
6371 
6372   Input Parameters:
6373 + dm  - the `DM`
6374 - dim - the dimension
6375 
6376   Output Parameters:
6377 + pStart - The first point of the given dimension
6378 - pEnd   - The first point following points of the given dimension
6379 
6380   Level: intermediate
6381 
6382   Note:
6383   The points are vertices in the Hasse diagram encoding the topology. This is explained in
6384   https://arxiv.org/abs/0908.4427. If no points exist of this dimension in the storage scheme,
6385   then the interval is empty.
6386 
6387 .seealso: [](ch_dmbase), `DM`, `DMPLEX`, `DMPlexGetDepthStratum()`, `DMPlexGetHeightStratum()`
6388 @*/
6389 PetscErrorCode DMGetDimPoints(DM dm, PetscInt dim, PetscInt *pStart, PetscInt *pEnd)
6390 {
6391   PetscInt d;
6392 
6393   PetscFunctionBegin;
6394   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
6395   PetscCall(DMGetDimension(dm, &d));
6396   PetscCheck((dim >= 0) && (dim <= d), PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Invalid dimension %" PetscInt_FMT, dim);
6397   PetscUseTypeMethod(dm, getdimpoints, dim, pStart, pEnd);
6398   PetscFunctionReturn(PETSC_SUCCESS);
6399 }
6400 
6401 /*@
6402   DMGetOutputDM - Retrieve the `DM` associated with the layout for output
6403 
6404   Collective
6405 
6406   Input Parameter:
6407 . dm - The original `DM`
6408 
6409   Output Parameter:
6410 . odm - The `DM` which provides the layout for output
6411 
6412   Level: intermediate
6413 
6414   Note:
6415   In some situations the vector obtained with `DMCreateGlobalVector()` excludes points for degrees of freedom that are associated with fixed (Dirichelet) boundary
6416   conditions since the algebraic solver does not solve for those variables. The output `DM` includes these excluded points and its global vector contains the
6417   locations for those dof so that they can be output to a file or other viewer along with the unconstrained dof.
6418 
6419 .seealso: [](ch_dmbase), `DM`, `VecView()`, `DMGetGlobalSection()`, `DMCreateGlobalVector()`, `PetscSectionHasConstraints()`, `DMSetGlobalSection()`
6420 @*/
6421 PetscErrorCode DMGetOutputDM(DM dm, DM *odm)
6422 {
6423   PetscSection section;
6424   IS           perm;
6425   PetscBool    hasConstraints, newDM, gnewDM;
6426 
6427   PetscFunctionBegin;
6428   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
6429   PetscAssertPointer(odm, 2);
6430   PetscCall(DMGetLocalSection(dm, &section));
6431   PetscCall(PetscSectionHasConstraints(section, &hasConstraints));
6432   PetscCall(PetscSectionGetPermutation(section, &perm));
6433   newDM = hasConstraints || perm ? PETSC_TRUE : PETSC_FALSE;
6434   PetscCall(MPIU_Allreduce(&newDM, &gnewDM, 1, MPIU_BOOL, MPI_LOR, PetscObjectComm((PetscObject)dm)));
6435   if (!gnewDM) {
6436     *odm = dm;
6437     PetscFunctionReturn(PETSC_SUCCESS);
6438   }
6439   if (!dm->dmBC) {
6440     PetscSection newSection, gsection;
6441     PetscSF      sf;
6442     PetscBool    usePerm = dm->ignorePermOutput ? PETSC_FALSE : PETSC_TRUE;
6443 
6444     PetscCall(DMClone(dm, &dm->dmBC));
6445     PetscCall(DMCopyDisc(dm, dm->dmBC));
6446     PetscCall(PetscSectionClone(section, &newSection));
6447     PetscCall(DMSetLocalSection(dm->dmBC, newSection));
6448     PetscCall(PetscSectionDestroy(&newSection));
6449     PetscCall(DMGetPointSF(dm->dmBC, &sf));
6450     PetscCall(PetscSectionCreateGlobalSection(section, sf, usePerm, PETSC_TRUE, PETSC_FALSE, &gsection));
6451     PetscCall(DMSetGlobalSection(dm->dmBC, gsection));
6452     PetscCall(PetscSectionDestroy(&gsection));
6453   }
6454   *odm = dm->dmBC;
6455   PetscFunctionReturn(PETSC_SUCCESS);
6456 }
6457 
6458 /*@
6459   DMGetOutputSequenceNumber - Retrieve the sequence number/value for output
6460 
6461   Input Parameter:
6462 . dm - The original `DM`
6463 
6464   Output Parameters:
6465 + num - The output sequence number
6466 - val - The output sequence value
6467 
6468   Level: intermediate
6469 
6470   Note:
6471   This is intended for output that should appear in sequence, for instance
6472   a set of timesteps in an `PETSCVIEWERHDF5` file, or a set of realizations of a stochastic system.
6473 
6474   Developer Notes:
6475   The `DM` serves as a convenient place to store the current iteration value. The iteration is not
6476   not directly related to the `DM`.
6477 
6478 .seealso: [](ch_dmbase), `DM`, `VecView()`
6479 @*/
6480 PetscErrorCode DMGetOutputSequenceNumber(DM dm, PetscInt *num, PetscReal *val)
6481 {
6482   PetscFunctionBegin;
6483   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
6484   if (num) {
6485     PetscAssertPointer(num, 2);
6486     *num = dm->outputSequenceNum;
6487   }
6488   if (val) {
6489     PetscAssertPointer(val, 3);
6490     *val = dm->outputSequenceVal;
6491   }
6492   PetscFunctionReturn(PETSC_SUCCESS);
6493 }
6494 
6495 /*@
6496   DMSetOutputSequenceNumber - Set the sequence number/value for output
6497 
6498   Input Parameters:
6499 + dm  - The original `DM`
6500 . num - The output sequence number
6501 - val - The output sequence value
6502 
6503   Level: intermediate
6504 
6505   Note:
6506   This is intended for output that should appear in sequence, for instance
6507   a set of timesteps in an `PETSCVIEWERHDF5` file, or a set of realizations of a stochastic system.
6508 
6509 .seealso: [](ch_dmbase), `DM`, `VecView()`
6510 @*/
6511 PetscErrorCode DMSetOutputSequenceNumber(DM dm, PetscInt num, PetscReal val)
6512 {
6513   PetscFunctionBegin;
6514   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
6515   dm->outputSequenceNum = num;
6516   dm->outputSequenceVal = val;
6517   PetscFunctionReturn(PETSC_SUCCESS);
6518 }
6519 
6520 /*@C
6521   DMOutputSequenceLoad - Retrieve the sequence value from a `PetscViewer`
6522 
6523   Input Parameters:
6524 + dm     - The original `DM`
6525 . viewer - The viewer to get it from
6526 . name   - The sequence name
6527 - num    - The output sequence number
6528 
6529   Output Parameter:
6530 . val - The output sequence value
6531 
6532   Level: intermediate
6533 
6534   Note:
6535   This is intended for output that should appear in sequence, for instance
6536   a set of timesteps in an `PETSCVIEWERHDF5` file, or a set of realizations of a stochastic system.
6537 
6538   Developer Notes:
6539   It is unclear at the user API level why a `DM` is needed as input
6540 
6541 .seealso: [](ch_dmbase), `DM`, `DMGetOutputSequenceNumber()`, `DMSetOutputSequenceNumber()`, `VecView()`
6542 @*/
6543 PetscErrorCode DMOutputSequenceLoad(DM dm, PetscViewer viewer, const char *name, PetscInt num, PetscReal *val)
6544 {
6545   PetscBool ishdf5;
6546 
6547   PetscFunctionBegin;
6548   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
6549   PetscValidHeaderSpecific(viewer, PETSC_VIEWER_CLASSID, 2);
6550   PetscAssertPointer(val, 5);
6551   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERHDF5, &ishdf5));
6552   if (ishdf5) {
6553 #if defined(PETSC_HAVE_HDF5)
6554     PetscScalar value;
6555 
6556     PetscCall(DMSequenceLoad_HDF5_Internal(dm, name, num, &value, viewer));
6557     *val = PetscRealPart(value);
6558 #endif
6559   } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Invalid viewer; open viewer with PetscViewerHDF5Open()");
6560   PetscFunctionReturn(PETSC_SUCCESS);
6561 }
6562 
6563 /*@
6564   DMGetUseNatural - Get the flag for creating a mapping to the natural order when a `DM` is (re)distributed in parallel
6565 
6566   Not Collective
6567 
6568   Input Parameter:
6569 . dm - The `DM`
6570 
6571   Output Parameter:
6572 . useNatural - `PETSC_TRUE` to build the mapping to a natural order during distribution
6573 
6574   Level: beginner
6575 
6576 .seealso: [](ch_dmbase), `DM`, `DMSetUseNatural()`, `DMCreate()`
6577 @*/
6578 PetscErrorCode DMGetUseNatural(DM dm, PetscBool *useNatural)
6579 {
6580   PetscFunctionBegin;
6581   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
6582   PetscAssertPointer(useNatural, 2);
6583   *useNatural = dm->useNatural;
6584   PetscFunctionReturn(PETSC_SUCCESS);
6585 }
6586 
6587 /*@
6588   DMSetUseNatural - Set the flag for creating a mapping to the natural order when a `DM` is (re)distributed in parallel
6589 
6590   Collective
6591 
6592   Input Parameters:
6593 + dm         - The `DM`
6594 - useNatural - `PETSC_TRUE` to build the mapping to a natural order during distribution
6595 
6596   Note:
6597   This also causes the map to be build after `DMCreateSubDM()` and `DMCreateSuperDM()`
6598 
6599   Level: beginner
6600 
6601 .seealso: [](ch_dmbase), `DM`, `DMGetUseNatural()`, `DMCreate()`, `DMPlexDistribute()`, `DMCreateSubDM()`, `DMCreateSuperDM()`
6602 @*/
6603 PetscErrorCode DMSetUseNatural(DM dm, PetscBool useNatural)
6604 {
6605   PetscFunctionBegin;
6606   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
6607   PetscValidLogicalCollectiveBool(dm, useNatural, 2);
6608   dm->useNatural = useNatural;
6609   PetscFunctionReturn(PETSC_SUCCESS);
6610 }
6611 
6612 /*@C
6613   DMCreateLabel - Create a label of the given name if it does not already exist in the `DM`
6614 
6615   Not Collective
6616 
6617   Input Parameters:
6618 + dm   - The `DM` object
6619 - name - The label name
6620 
6621   Level: intermediate
6622 
6623 .seealso: [](ch_dmbase), `DM`, `DMLabelCreate()`, `DMHasLabel()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMGetStratumIS()`
6624 @*/
6625 PetscErrorCode DMCreateLabel(DM dm, const char name[])
6626 {
6627   PetscBool flg;
6628   DMLabel   label;
6629 
6630   PetscFunctionBegin;
6631   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
6632   PetscAssertPointer(name, 2);
6633   PetscCall(DMHasLabel(dm, name, &flg));
6634   if (!flg) {
6635     PetscCall(DMLabelCreate(PETSC_COMM_SELF, name, &label));
6636     PetscCall(DMAddLabel(dm, label));
6637     PetscCall(DMLabelDestroy(&label));
6638   }
6639   PetscFunctionReturn(PETSC_SUCCESS);
6640 }
6641 
6642 /*@C
6643   DMCreateLabelAtIndex - Create a label of the given name at the given index. If it already exists in the `DM`, move it to this index.
6644 
6645   Not Collective
6646 
6647   Input Parameters:
6648 + dm   - The `DM` object
6649 . l    - The index for the label
6650 - name - The label name
6651 
6652   Level: intermediate
6653 
6654 .seealso: [](ch_dmbase), `DM`, `DMCreateLabel()`, `DMLabelCreate()`, `DMHasLabel()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMGetStratumIS()`
6655 @*/
6656 PetscErrorCode DMCreateLabelAtIndex(DM dm, PetscInt l, const char name[])
6657 {
6658   DMLabelLink orig, prev = NULL;
6659   DMLabel     label;
6660   PetscInt    Nl, m;
6661   PetscBool   flg, match;
6662   const char *lname;
6663 
6664   PetscFunctionBegin;
6665   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
6666   PetscAssertPointer(name, 3);
6667   PetscCall(DMHasLabel(dm, name, &flg));
6668   if (!flg) {
6669     PetscCall(DMLabelCreate(PETSC_COMM_SELF, name, &label));
6670     PetscCall(DMAddLabel(dm, label));
6671     PetscCall(DMLabelDestroy(&label));
6672   }
6673   PetscCall(DMGetNumLabels(dm, &Nl));
6674   PetscCheck(l < Nl, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Label index %" PetscInt_FMT " must be in [0, %" PetscInt_FMT ")", l, Nl);
6675   for (m = 0, orig = dm->labels; m < Nl; ++m, prev = orig, orig = orig->next) {
6676     PetscCall(PetscObjectGetName((PetscObject)orig->label, &lname));
6677     PetscCall(PetscStrcmp(name, lname, &match));
6678     if (match) break;
6679   }
6680   if (m == l) PetscFunctionReturn(PETSC_SUCCESS);
6681   if (!m) dm->labels = orig->next;
6682   else prev->next = orig->next;
6683   if (!l) {
6684     orig->next = dm->labels;
6685     dm->labels = orig;
6686   } else {
6687     for (m = 0, prev = dm->labels; m < l - 1; ++m, prev = prev->next)
6688       ;
6689     orig->next = prev->next;
6690     prev->next = orig;
6691   }
6692   PetscFunctionReturn(PETSC_SUCCESS);
6693 }
6694 
6695 /*@C
6696   DMGetLabelValue - Get the value in a `DMLabel` for the given point, with -1 as the default
6697 
6698   Not Collective
6699 
6700   Input Parameters:
6701 + dm    - The `DM` object
6702 . name  - The label name
6703 - point - The mesh point
6704 
6705   Output Parameter:
6706 . value - The label value for this point, or -1 if the point is not in the label
6707 
6708   Level: beginner
6709 
6710 .seealso: [](ch_dmbase), `DM`, `DMLabelGetValue()`, `DMSetLabelValue()`, `DMGetStratumIS()`
6711 @*/
6712 PetscErrorCode DMGetLabelValue(DM dm, const char name[], PetscInt point, PetscInt *value)
6713 {
6714   DMLabel label;
6715 
6716   PetscFunctionBegin;
6717   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
6718   PetscAssertPointer(name, 2);
6719   PetscCall(DMGetLabel(dm, name, &label));
6720   PetscCheck(label, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "No label named %s was found", name);
6721   PetscCall(DMLabelGetValue(label, point, value));
6722   PetscFunctionReturn(PETSC_SUCCESS);
6723 }
6724 
6725 /*@C
6726   DMSetLabelValue - Add a point to a `DMLabel` with given value
6727 
6728   Not Collective
6729 
6730   Input Parameters:
6731 + dm    - The `DM` object
6732 . name  - The label name
6733 . point - The mesh point
6734 - value - The label value for this point
6735 
6736   Output Parameter:
6737 
6738   Level: beginner
6739 
6740 .seealso: [](ch_dmbase), `DM`, `DMLabelSetValue()`, `DMGetStratumIS()`, `DMClearLabelValue()`
6741 @*/
6742 PetscErrorCode DMSetLabelValue(DM dm, const char name[], PetscInt point, PetscInt value)
6743 {
6744   DMLabel label;
6745 
6746   PetscFunctionBegin;
6747   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
6748   PetscAssertPointer(name, 2);
6749   PetscCall(DMGetLabel(dm, name, &label));
6750   if (!label) {
6751     PetscCall(DMCreateLabel(dm, name));
6752     PetscCall(DMGetLabel(dm, name, &label));
6753   }
6754   PetscCall(DMLabelSetValue(label, point, value));
6755   PetscFunctionReturn(PETSC_SUCCESS);
6756 }
6757 
6758 /*@C
6759   DMClearLabelValue - Remove a point from a `DMLabel` with given value
6760 
6761   Not Collective
6762 
6763   Input Parameters:
6764 + dm    - The `DM` object
6765 . name  - The label name
6766 . point - The mesh point
6767 - value - The label value for this point
6768 
6769   Level: beginner
6770 
6771 .seealso: [](ch_dmbase), `DM`, `DMLabelClearValue()`, `DMSetLabelValue()`, `DMGetStratumIS()`
6772 @*/
6773 PetscErrorCode DMClearLabelValue(DM dm, const char name[], PetscInt point, PetscInt value)
6774 {
6775   DMLabel label;
6776 
6777   PetscFunctionBegin;
6778   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
6779   PetscAssertPointer(name, 2);
6780   PetscCall(DMGetLabel(dm, name, &label));
6781   if (!label) PetscFunctionReturn(PETSC_SUCCESS);
6782   PetscCall(DMLabelClearValue(label, point, value));
6783   PetscFunctionReturn(PETSC_SUCCESS);
6784 }
6785 
6786 /*@C
6787   DMGetLabelSize - Get the value of `DMLabelGetNumValues()` of a `DMLabel` in the `DM`
6788 
6789   Not Collective
6790 
6791   Input Parameters:
6792 + dm   - The `DM` object
6793 - name - The label name
6794 
6795   Output Parameter:
6796 . size - The number of different integer ids, or 0 if the label does not exist
6797 
6798   Level: beginner
6799 
6800   Developer Notes:
6801   This should be renamed to something like `DMGetLabelNumValues()` or removed.
6802 
6803 .seealso: [](ch_dmbase), `DM`, `DMLabelGetNumValues()`, `DMSetLabelValue()`, `DMGetLabel()`
6804 @*/
6805 PetscErrorCode DMGetLabelSize(DM dm, const char name[], PetscInt *size)
6806 {
6807   DMLabel label;
6808 
6809   PetscFunctionBegin;
6810   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
6811   PetscAssertPointer(name, 2);
6812   PetscAssertPointer(size, 3);
6813   PetscCall(DMGetLabel(dm, name, &label));
6814   *size = 0;
6815   if (!label) PetscFunctionReturn(PETSC_SUCCESS);
6816   PetscCall(DMLabelGetNumValues(label, size));
6817   PetscFunctionReturn(PETSC_SUCCESS);
6818 }
6819 
6820 /*@C
6821   DMGetLabelIdIS - Get the `DMLabelGetValueIS()` from a `DMLabel` in the `DM`
6822 
6823   Not Collective
6824 
6825   Input Parameters:
6826 + dm   - The `DM` object
6827 - name - The label name
6828 
6829   Output Parameter:
6830 . ids - The integer ids, or `NULL` if the label does not exist
6831 
6832   Level: beginner
6833 
6834 .seealso: [](ch_dmbase), `DM`, `DMLabelGetValueIS()`, `DMGetLabelSize()`
6835 @*/
6836 PetscErrorCode DMGetLabelIdIS(DM dm, const char name[], IS *ids)
6837 {
6838   DMLabel label;
6839 
6840   PetscFunctionBegin;
6841   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
6842   PetscAssertPointer(name, 2);
6843   PetscAssertPointer(ids, 3);
6844   PetscCall(DMGetLabel(dm, name, &label));
6845   *ids = NULL;
6846   if (label) {
6847     PetscCall(DMLabelGetValueIS(label, ids));
6848   } else {
6849     /* returning an empty IS */
6850     PetscCall(ISCreateGeneral(PETSC_COMM_SELF, 0, NULL, PETSC_USE_POINTER, ids));
6851   }
6852   PetscFunctionReturn(PETSC_SUCCESS);
6853 }
6854 
6855 /*@C
6856   DMGetStratumSize - Get the number of points in a label stratum
6857 
6858   Not Collective
6859 
6860   Input Parameters:
6861 + dm    - The `DM` object
6862 . name  - The label name
6863 - value - The stratum value
6864 
6865   Output Parameter:
6866 . size - The number of points, also called the stratum size
6867 
6868   Level: beginner
6869 
6870 .seealso: [](ch_dmbase), `DM`, `DMLabelGetStratumSize()`, `DMGetLabelSize()`, `DMGetLabelIds()`
6871 @*/
6872 PetscErrorCode DMGetStratumSize(DM dm, const char name[], PetscInt value, PetscInt *size)
6873 {
6874   DMLabel label;
6875 
6876   PetscFunctionBegin;
6877   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
6878   PetscAssertPointer(name, 2);
6879   PetscAssertPointer(size, 4);
6880   PetscCall(DMGetLabel(dm, name, &label));
6881   *size = 0;
6882   if (!label) PetscFunctionReturn(PETSC_SUCCESS);
6883   PetscCall(DMLabelGetStratumSize(label, value, size));
6884   PetscFunctionReturn(PETSC_SUCCESS);
6885 }
6886 
6887 /*@C
6888   DMGetStratumIS - Get the points in a label stratum
6889 
6890   Not Collective
6891 
6892   Input Parameters:
6893 + dm    - The `DM` object
6894 . name  - The label name
6895 - value - The stratum value
6896 
6897   Output Parameter:
6898 . points - The stratum points, or `NULL` if the label does not exist or does not have that value
6899 
6900   Level: beginner
6901 
6902 .seealso: [](ch_dmbase), `DM`, `DMLabelGetStratumIS()`, `DMGetStratumSize()`
6903 @*/
6904 PetscErrorCode DMGetStratumIS(DM dm, const char name[], PetscInt value, IS *points)
6905 {
6906   DMLabel label;
6907 
6908   PetscFunctionBegin;
6909   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
6910   PetscAssertPointer(name, 2);
6911   PetscAssertPointer(points, 4);
6912   PetscCall(DMGetLabel(dm, name, &label));
6913   *points = NULL;
6914   if (!label) PetscFunctionReturn(PETSC_SUCCESS);
6915   PetscCall(DMLabelGetStratumIS(label, value, points));
6916   PetscFunctionReturn(PETSC_SUCCESS);
6917 }
6918 
6919 /*@C
6920   DMSetStratumIS - Set the points in a label stratum
6921 
6922   Not Collective
6923 
6924   Input Parameters:
6925 + dm     - The `DM` object
6926 . name   - The label name
6927 . value  - The stratum value
6928 - points - The stratum points
6929 
6930   Level: beginner
6931 
6932 .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMClearLabelStratum()`, `DMLabelClearStratum()`, `DMLabelSetStratumIS()`, `DMGetStratumSize()`
6933 @*/
6934 PetscErrorCode DMSetStratumIS(DM dm, const char name[], PetscInt value, IS points)
6935 {
6936   DMLabel label;
6937 
6938   PetscFunctionBegin;
6939   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
6940   PetscAssertPointer(name, 2);
6941   PetscValidHeaderSpecific(points, IS_CLASSID, 4);
6942   PetscCall(DMGetLabel(dm, name, &label));
6943   if (!label) PetscFunctionReturn(PETSC_SUCCESS);
6944   PetscCall(DMLabelSetStratumIS(label, value, points));
6945   PetscFunctionReturn(PETSC_SUCCESS);
6946 }
6947 
6948 /*@C
6949   DMClearLabelStratum - Remove all points from a stratum from a `DMLabel`
6950 
6951   Not Collective
6952 
6953   Input Parameters:
6954 + dm    - The `DM` object
6955 . name  - The label name
6956 - value - The label value for this point
6957 
6958   Output Parameter:
6959 
6960   Level: beginner
6961 
6962 .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMLabelClearStratum()`, `DMSetLabelValue()`, `DMGetStratumIS()`, `DMClearLabelValue()`
6963 @*/
6964 PetscErrorCode DMClearLabelStratum(DM dm, const char name[], PetscInt value)
6965 {
6966   DMLabel label;
6967 
6968   PetscFunctionBegin;
6969   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
6970   PetscAssertPointer(name, 2);
6971   PetscCall(DMGetLabel(dm, name, &label));
6972   if (!label) PetscFunctionReturn(PETSC_SUCCESS);
6973   PetscCall(DMLabelClearStratum(label, value));
6974   PetscFunctionReturn(PETSC_SUCCESS);
6975 }
6976 
6977 /*@
6978   DMGetNumLabels - Return the number of labels defined by on the `DM`
6979 
6980   Not Collective
6981 
6982   Input Parameter:
6983 . dm - The `DM` object
6984 
6985   Output Parameter:
6986 . numLabels - the number of Labels
6987 
6988   Level: intermediate
6989 
6990 .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMGetLabelByNum()`, `DMGetLabelName()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMGetStratumIS()`
6991 @*/
6992 PetscErrorCode DMGetNumLabels(DM dm, PetscInt *numLabels)
6993 {
6994   DMLabelLink next = dm->labels;
6995   PetscInt    n    = 0;
6996 
6997   PetscFunctionBegin;
6998   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
6999   PetscAssertPointer(numLabels, 2);
7000   while (next) {
7001     ++n;
7002     next = next->next;
7003   }
7004   *numLabels = n;
7005   PetscFunctionReturn(PETSC_SUCCESS);
7006 }
7007 
7008 /*@C
7009   DMGetLabelName - Return the name of nth label
7010 
7011   Not Collective
7012 
7013   Input Parameters:
7014 + dm - The `DM` object
7015 - n  - the label number
7016 
7017   Output Parameter:
7018 . name - the label name
7019 
7020   Level: intermediate
7021 
7022   Developer Notes:
7023   Some of the functions that appropriate on labels using their number have the suffix ByNum, others do not.
7024 
7025 .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMGetLabelByNum()`, `DMGetLabel()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMGetStratumIS()`
7026 @*/
7027 PetscErrorCode DMGetLabelName(DM dm, PetscInt n, const char **name)
7028 {
7029   DMLabelLink next = dm->labels;
7030   PetscInt    l    = 0;
7031 
7032   PetscFunctionBegin;
7033   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
7034   PetscAssertPointer(name, 3);
7035   while (next) {
7036     if (l == n) {
7037       PetscCall(PetscObjectGetName((PetscObject)next->label, name));
7038       PetscFunctionReturn(PETSC_SUCCESS);
7039     }
7040     ++l;
7041     next = next->next;
7042   }
7043   SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Label %" PetscInt_FMT " does not exist in this DM", n);
7044 }
7045 
7046 /*@C
7047   DMHasLabel - Determine whether the `DM` has a label of a given name
7048 
7049   Not Collective
7050 
7051   Input Parameters:
7052 + dm   - The `DM` object
7053 - name - The label name
7054 
7055   Output Parameter:
7056 . hasLabel - `PETSC_TRUE` if the label is present
7057 
7058   Level: intermediate
7059 
7060 .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMGetLabel()`, `DMGetLabelByNum()`, `DMCreateLabel()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMGetStratumIS()`
7061 @*/
7062 PetscErrorCode DMHasLabel(DM dm, const char name[], PetscBool *hasLabel)
7063 {
7064   DMLabelLink next = dm->labels;
7065   const char *lname;
7066 
7067   PetscFunctionBegin;
7068   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
7069   PetscAssertPointer(name, 2);
7070   PetscAssertPointer(hasLabel, 3);
7071   *hasLabel = PETSC_FALSE;
7072   while (next) {
7073     PetscCall(PetscObjectGetName((PetscObject)next->label, &lname));
7074     PetscCall(PetscStrcmp(name, lname, hasLabel));
7075     if (*hasLabel) break;
7076     next = next->next;
7077   }
7078   PetscFunctionReturn(PETSC_SUCCESS);
7079 }
7080 
7081 // PetscClangLinter pragma ignore: -fdoc-section-header-unknown
7082 /*@C
7083   DMGetLabel - Return the label of a given name, or `NULL`, from a `DM`
7084 
7085   Not Collective
7086 
7087   Input Parameters:
7088 + dm   - The `DM` object
7089 - name - The label name
7090 
7091   Output Parameter:
7092 . label - The `DMLabel`, or `NULL` if the label is absent
7093 
7094   Default labels in a `DMPLEX`:
7095 + "depth"       - Holds the depth (co-dimension) of each mesh point
7096 . "celltype"    - Holds the topological type of each cell
7097 . "ghost"       - If the DM is distributed with overlap, this marks the cells and faces in the overlap
7098 . "Cell Sets"   - Mirrors the cell sets defined by GMsh and ExodusII
7099 . "Face Sets"   - Mirrors the face sets defined by GMsh and ExodusII
7100 - "Vertex Sets" - Mirrors the vertex sets defined by GMsh
7101 
7102   Level: intermediate
7103 
7104 .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMHasLabel()`, `DMGetLabelByNum()`, `DMAddLabel()`, `DMCreateLabel()`, `DMPlexGetDepthLabel()`, `DMPlexGetCellType()`
7105 @*/
7106 PetscErrorCode DMGetLabel(DM dm, const char name[], DMLabel *label)
7107 {
7108   DMLabelLink next = dm->labels;
7109   PetscBool   hasLabel;
7110   const char *lname;
7111 
7112   PetscFunctionBegin;
7113   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
7114   PetscAssertPointer(name, 2);
7115   PetscAssertPointer(label, 3);
7116   *label = NULL;
7117   while (next) {
7118     PetscCall(PetscObjectGetName((PetscObject)next->label, &lname));
7119     PetscCall(PetscStrcmp(name, lname, &hasLabel));
7120     if (hasLabel) {
7121       *label = next->label;
7122       break;
7123     }
7124     next = next->next;
7125   }
7126   PetscFunctionReturn(PETSC_SUCCESS);
7127 }
7128 
7129 /*@C
7130   DMGetLabelByNum - Return the nth label on a `DM`
7131 
7132   Not Collective
7133 
7134   Input Parameters:
7135 + dm - The `DM` object
7136 - n  - the label number
7137 
7138   Output Parameter:
7139 . label - the label
7140 
7141   Level: intermediate
7142 
7143 .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMAddLabel()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMGetStratumIS()`
7144 @*/
7145 PetscErrorCode DMGetLabelByNum(DM dm, PetscInt n, DMLabel *label)
7146 {
7147   DMLabelLink next = dm->labels;
7148   PetscInt    l    = 0;
7149 
7150   PetscFunctionBegin;
7151   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
7152   PetscAssertPointer(label, 3);
7153   while (next) {
7154     if (l == n) {
7155       *label = next->label;
7156       PetscFunctionReturn(PETSC_SUCCESS);
7157     }
7158     ++l;
7159     next = next->next;
7160   }
7161   SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Label %" PetscInt_FMT " does not exist in this DM", n);
7162 }
7163 
7164 /*@C
7165   DMAddLabel - Add the label to this `DM`
7166 
7167   Not Collective
7168 
7169   Input Parameters:
7170 + dm    - The `DM` object
7171 - label - The `DMLabel`
7172 
7173   Level: developer
7174 
7175 .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMCreateLabel()`, `DMHasLabel()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMGetStratumIS()`
7176 @*/
7177 PetscErrorCode DMAddLabel(DM dm, DMLabel label)
7178 {
7179   DMLabelLink l, *p, tmpLabel;
7180   PetscBool   hasLabel;
7181   const char *lname;
7182   PetscBool   flg;
7183 
7184   PetscFunctionBegin;
7185   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
7186   PetscCall(PetscObjectGetName((PetscObject)label, &lname));
7187   PetscCall(DMHasLabel(dm, lname, &hasLabel));
7188   PetscCheck(!hasLabel, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Label %s already exists in this DM", lname);
7189   PetscCall(PetscCalloc1(1, &tmpLabel));
7190   tmpLabel->label  = label;
7191   tmpLabel->output = PETSC_TRUE;
7192   for (p = &dm->labels; (l = *p); p = &l->next) { }
7193   *p = tmpLabel;
7194   PetscCall(PetscObjectReference((PetscObject)label));
7195   PetscCall(PetscStrcmp(lname, "depth", &flg));
7196   if (flg) dm->depthLabel = label;
7197   PetscCall(PetscStrcmp(lname, "celltype", &flg));
7198   if (flg) dm->celltypeLabel = label;
7199   PetscFunctionReturn(PETSC_SUCCESS);
7200 }
7201 
7202 // PetscClangLinter pragma ignore: -fdoc-section-header-unknown
7203 /*@C
7204   DMSetLabel - Replaces the label of a given name, or ignores it if the name is not present
7205 
7206   Not Collective
7207 
7208   Input Parameters:
7209 + dm    - The `DM` object
7210 - label - The `DMLabel`, having the same name, to substitute
7211 
7212   Default labels in a `DMPLEX`:
7213 + "depth"       - Holds the depth (co-dimension) of each mesh point
7214 . "celltype"    - Holds the topological type of each cell
7215 . "ghost"       - If the DM is distributed with overlap, this marks the cells and faces in the overlap
7216 . "Cell Sets"   - Mirrors the cell sets defined by GMsh and ExodusII
7217 . "Face Sets"   - Mirrors the face sets defined by GMsh and ExodusII
7218 - "Vertex Sets" - Mirrors the vertex sets defined by GMsh
7219 
7220   Level: intermediate
7221 
7222 .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMCreateLabel()`, `DMHasLabel()`, `DMPlexGetDepthLabel()`, `DMPlexGetCellType()`
7223 @*/
7224 PetscErrorCode DMSetLabel(DM dm, DMLabel label)
7225 {
7226   DMLabelLink next = dm->labels;
7227   PetscBool   hasLabel, flg;
7228   const char *name, *lname;
7229 
7230   PetscFunctionBegin;
7231   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
7232   PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 2);
7233   PetscCall(PetscObjectGetName((PetscObject)label, &name));
7234   while (next) {
7235     PetscCall(PetscObjectGetName((PetscObject)next->label, &lname));
7236     PetscCall(PetscStrcmp(name, lname, &hasLabel));
7237     if (hasLabel) {
7238       PetscCall(PetscObjectReference((PetscObject)label));
7239       PetscCall(PetscStrcmp(lname, "depth", &flg));
7240       if (flg) dm->depthLabel = label;
7241       PetscCall(PetscStrcmp(lname, "celltype", &flg));
7242       if (flg) dm->celltypeLabel = label;
7243       PetscCall(DMLabelDestroy(&next->label));
7244       next->label = label;
7245       break;
7246     }
7247     next = next->next;
7248   }
7249   PetscFunctionReturn(PETSC_SUCCESS);
7250 }
7251 
7252 /*@C
7253   DMRemoveLabel - Remove the label given by name from this `DM`
7254 
7255   Not Collective
7256 
7257   Input Parameters:
7258 + dm   - The `DM` object
7259 - name - The label name
7260 
7261   Output Parameter:
7262 . label - The `DMLabel`, or `NULL` if the label is absent. Pass in `NULL` to call `DMLabelDestroy()` on the label, otherwise the
7263           caller is responsible for calling `DMLabelDestroy()`.
7264 
7265   Level: developer
7266 
7267 .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMCreateLabel()`, `DMHasLabel()`, `DMGetLabel()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMLabelDestroy()`, `DMRemoveLabelBySelf()`
7268 @*/
7269 PetscErrorCode DMRemoveLabel(DM dm, const char name[], DMLabel *label)
7270 {
7271   DMLabelLink link, *pnext;
7272   PetscBool   hasLabel;
7273   const char *lname;
7274 
7275   PetscFunctionBegin;
7276   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
7277   PetscAssertPointer(name, 2);
7278   if (label) {
7279     PetscAssertPointer(label, 3);
7280     *label = NULL;
7281   }
7282   for (pnext = &dm->labels; (link = *pnext); pnext = &link->next) {
7283     PetscCall(PetscObjectGetName((PetscObject)link->label, &lname));
7284     PetscCall(PetscStrcmp(name, lname, &hasLabel));
7285     if (hasLabel) {
7286       *pnext = link->next; /* Remove from list */
7287       PetscCall(PetscStrcmp(name, "depth", &hasLabel));
7288       if (hasLabel) dm->depthLabel = NULL;
7289       PetscCall(PetscStrcmp(name, "celltype", &hasLabel));
7290       if (hasLabel) dm->celltypeLabel = NULL;
7291       if (label) *label = link->label;
7292       else PetscCall(DMLabelDestroy(&link->label));
7293       PetscCall(PetscFree(link));
7294       break;
7295     }
7296   }
7297   PetscFunctionReturn(PETSC_SUCCESS);
7298 }
7299 
7300 /*@
7301   DMRemoveLabelBySelf - Remove the label from this `DM`
7302 
7303   Not Collective
7304 
7305   Input Parameters:
7306 + dm           - The `DM` object
7307 . label        - The `DMLabel` to be removed from the `DM`
7308 - failNotFound - Should it fail if the label is not found in the `DM`?
7309 
7310   Level: developer
7311 
7312   Note:
7313   Only exactly the same instance is removed if found, name match is ignored.
7314   If the `DM` has an exclusive reference to the label, the label gets destroyed and
7315   *label nullified.
7316 
7317 .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMCreateLabel()`, `DMHasLabel()`, `DMGetLabel()` `DMGetLabelValue()`, `DMSetLabelValue()`, `DMLabelDestroy()`, `DMRemoveLabel()`
7318 @*/
7319 PetscErrorCode DMRemoveLabelBySelf(DM dm, DMLabel *label, PetscBool failNotFound)
7320 {
7321   DMLabelLink link, *pnext;
7322   PetscBool   hasLabel = PETSC_FALSE;
7323 
7324   PetscFunctionBegin;
7325   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
7326   PetscAssertPointer(label, 2);
7327   if (!*label && !failNotFound) PetscFunctionReturn(PETSC_SUCCESS);
7328   PetscValidHeaderSpecific(*label, DMLABEL_CLASSID, 2);
7329   PetscValidLogicalCollectiveBool(dm, failNotFound, 3);
7330   for (pnext = &dm->labels; (link = *pnext); pnext = &link->next) {
7331     if (*label == link->label) {
7332       hasLabel = PETSC_TRUE;
7333       *pnext   = link->next; /* Remove from list */
7334       if (*label == dm->depthLabel) dm->depthLabel = NULL;
7335       if (*label == dm->celltypeLabel) dm->celltypeLabel = NULL;
7336       if (((PetscObject)link->label)->refct < 2) *label = NULL; /* nullify if exclusive reference */
7337       PetscCall(DMLabelDestroy(&link->label));
7338       PetscCall(PetscFree(link));
7339       break;
7340     }
7341   }
7342   PetscCheck(hasLabel || !failNotFound, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Given label not found in DM");
7343   PetscFunctionReturn(PETSC_SUCCESS);
7344 }
7345 
7346 /*@C
7347   DMGetLabelOutput - Get the output flag for a given label
7348 
7349   Not Collective
7350 
7351   Input Parameters:
7352 + dm   - The `DM` object
7353 - name - The label name
7354 
7355   Output Parameter:
7356 . output - The flag for output
7357 
7358   Level: developer
7359 
7360 .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMSetLabelOutput()`, `DMCreateLabel()`, `DMHasLabel()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMGetStratumIS()`
7361 @*/
7362 PetscErrorCode DMGetLabelOutput(DM dm, const char name[], PetscBool *output)
7363 {
7364   DMLabelLink next = dm->labels;
7365   const char *lname;
7366 
7367   PetscFunctionBegin;
7368   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
7369   PetscAssertPointer(name, 2);
7370   PetscAssertPointer(output, 3);
7371   while (next) {
7372     PetscBool flg;
7373 
7374     PetscCall(PetscObjectGetName((PetscObject)next->label, &lname));
7375     PetscCall(PetscStrcmp(name, lname, &flg));
7376     if (flg) {
7377       *output = next->output;
7378       PetscFunctionReturn(PETSC_SUCCESS);
7379     }
7380     next = next->next;
7381   }
7382   SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "No label named %s was present in this dm", name);
7383 }
7384 
7385 /*@C
7386   DMSetLabelOutput - Set if a given label should be saved to a `PetscViewer` in calls to `DMView()`
7387 
7388   Not Collective
7389 
7390   Input Parameters:
7391 + dm     - The `DM` object
7392 . name   - The label name
7393 - output - `PETSC_TRUE` to save the label to the viewer
7394 
7395   Level: developer
7396 
7397 .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMGetOutputFlag()`, `DMGetLabelOutput()`, `DMCreateLabel()`, `DMHasLabel()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMGetStratumIS()`
7398 @*/
7399 PetscErrorCode DMSetLabelOutput(DM dm, const char name[], PetscBool output)
7400 {
7401   DMLabelLink next = dm->labels;
7402   const char *lname;
7403 
7404   PetscFunctionBegin;
7405   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
7406   PetscAssertPointer(name, 2);
7407   while (next) {
7408     PetscBool flg;
7409 
7410     PetscCall(PetscObjectGetName((PetscObject)next->label, &lname));
7411     PetscCall(PetscStrcmp(name, lname, &flg));
7412     if (flg) {
7413       next->output = output;
7414       PetscFunctionReturn(PETSC_SUCCESS);
7415     }
7416     next = next->next;
7417   }
7418   SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "No label named %s was present in this dm", name);
7419 }
7420 
7421 /*@
7422   DMCopyLabels - Copy labels from one `DM` mesh to another `DM` with a superset of the points
7423 
7424   Collective
7425 
7426   Input Parameters:
7427 + dmA   - The `DM` object with initial labels
7428 . dmB   - The `DM` object to which labels are copied
7429 . mode  - Copy labels by pointers (`PETSC_OWN_POINTER`) or duplicate them (`PETSC_COPY_VALUES`)
7430 . all   - Copy all labels including "depth", "dim", and "celltype" (`PETSC_TRUE`) which are otherwise ignored (`PETSC_FALSE`)
7431 - emode - How to behave when a `DMLabel` in the source and destination `DM`s with the same name is encountered (see `DMCopyLabelsMode`)
7432 
7433   Level: intermediate
7434 
7435   Note:
7436   This is typically used when interpolating or otherwise adding to a mesh, or testing.
7437 
7438 .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMAddLabel()`, `DMCopyLabelsMode`
7439 @*/
7440 PetscErrorCode DMCopyLabels(DM dmA, DM dmB, PetscCopyMode mode, PetscBool all, DMCopyLabelsMode emode)
7441 {
7442   DMLabel     label, labelNew, labelOld;
7443   const char *name;
7444   PetscBool   flg;
7445   DMLabelLink link;
7446 
7447   PetscFunctionBegin;
7448   PetscValidHeaderSpecific(dmA, DM_CLASSID, 1);
7449   PetscValidHeaderSpecific(dmB, DM_CLASSID, 2);
7450   PetscValidLogicalCollectiveEnum(dmA, mode, 3);
7451   PetscValidLogicalCollectiveBool(dmA, all, 4);
7452   PetscCheck(mode != PETSC_USE_POINTER, PetscObjectComm((PetscObject)dmA), PETSC_ERR_SUP, "PETSC_USE_POINTER not supported for objects");
7453   if (dmA == dmB) PetscFunctionReturn(PETSC_SUCCESS);
7454   for (link = dmA->labels; link; link = link->next) {
7455     label = link->label;
7456     PetscCall(PetscObjectGetName((PetscObject)label, &name));
7457     if (!all) {
7458       PetscCall(PetscStrcmp(name, "depth", &flg));
7459       if (flg) continue;
7460       PetscCall(PetscStrcmp(name, "dim", &flg));
7461       if (flg) continue;
7462       PetscCall(PetscStrcmp(name, "celltype", &flg));
7463       if (flg) continue;
7464     }
7465     PetscCall(DMGetLabel(dmB, name, &labelOld));
7466     if (labelOld) {
7467       switch (emode) {
7468       case DM_COPY_LABELS_KEEP:
7469         continue;
7470       case DM_COPY_LABELS_REPLACE:
7471         PetscCall(DMRemoveLabelBySelf(dmB, &labelOld, PETSC_TRUE));
7472         break;
7473       case DM_COPY_LABELS_FAIL:
7474         SETERRQ(PetscObjectComm((PetscObject)dmA), PETSC_ERR_ARG_OUTOFRANGE, "Label %s already exists in destination DM", name);
7475       default:
7476         SETERRQ(PetscObjectComm((PetscObject)dmA), PETSC_ERR_ARG_OUTOFRANGE, "Unhandled DMCopyLabelsMode %d", (int)emode);
7477       }
7478     }
7479     if (mode == PETSC_COPY_VALUES) {
7480       PetscCall(DMLabelDuplicate(label, &labelNew));
7481     } else {
7482       labelNew = label;
7483     }
7484     PetscCall(DMAddLabel(dmB, labelNew));
7485     if (mode == PETSC_COPY_VALUES) PetscCall(DMLabelDestroy(&labelNew));
7486   }
7487   PetscFunctionReturn(PETSC_SUCCESS);
7488 }
7489 
7490 /*@C
7491   DMCompareLabels - Compare labels between two `DM` objects
7492 
7493   Collective; No Fortran Support
7494 
7495   Input Parameters:
7496 + dm0 - First `DM` object
7497 - dm1 - Second `DM` object
7498 
7499   Output Parameters:
7500 + equal   - (Optional) Flag whether labels of dm0 and dm1 are the same
7501 - message - (Optional) Message describing the difference, or `NULL` if there is no difference
7502 
7503   Level: intermediate
7504 
7505   Notes:
7506   The output flag equal will be the same on all processes.
7507 
7508   If equal is passed as `NULL` and difference is found, an error is thrown on all processes.
7509 
7510   Make sure to pass equal is `NULL` on all processes or none of them.
7511 
7512   The output message is set independently on each rank.
7513 
7514   message must be freed with `PetscFree()`
7515 
7516   If message is passed as `NULL` and a difference is found, the difference description is printed to stderr in synchronized manner.
7517 
7518   Make sure to pass message as `NULL` on all processes or no processes.
7519 
7520   Labels are matched by name. If the number of labels and their names are equal,
7521   `DMLabelCompare()` is used to compare each pair of labels with the same name.
7522 
7523 .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMAddLabel()`, `DMCopyLabelsMode`, `DMLabelCompare()`
7524 @*/
7525 PetscErrorCode DMCompareLabels(DM dm0, DM dm1, PetscBool *equal, char **message)
7526 {
7527   PetscInt    n, i;
7528   char        msg[PETSC_MAX_PATH_LEN] = "";
7529   PetscBool   eq;
7530   MPI_Comm    comm;
7531   PetscMPIInt rank;
7532 
7533   PetscFunctionBegin;
7534   PetscValidHeaderSpecific(dm0, DM_CLASSID, 1);
7535   PetscValidHeaderSpecific(dm1, DM_CLASSID, 2);
7536   PetscCheckSameComm(dm0, 1, dm1, 2);
7537   if (equal) PetscAssertPointer(equal, 3);
7538   if (message) PetscAssertPointer(message, 4);
7539   PetscCall(PetscObjectGetComm((PetscObject)dm0, &comm));
7540   PetscCallMPI(MPI_Comm_rank(comm, &rank));
7541   {
7542     PetscInt n1;
7543 
7544     PetscCall(DMGetNumLabels(dm0, &n));
7545     PetscCall(DMGetNumLabels(dm1, &n1));
7546     eq = (PetscBool)(n == n1);
7547     if (!eq) PetscCall(PetscSNPrintf(msg, sizeof(msg), "Number of labels in dm0 = %" PetscInt_FMT " != %" PetscInt_FMT " = Number of labels in dm1", n, n1));
7548     PetscCall(MPIU_Allreduce(MPI_IN_PLACE, &eq, 1, MPIU_BOOL, MPI_LAND, comm));
7549     if (!eq) goto finish;
7550   }
7551   for (i = 0; i < n; i++) {
7552     DMLabel     l0, l1;
7553     const char *name;
7554     char       *msgInner;
7555 
7556     /* Ignore label order */
7557     PetscCall(DMGetLabelByNum(dm0, i, &l0));
7558     PetscCall(PetscObjectGetName((PetscObject)l0, &name));
7559     PetscCall(DMGetLabel(dm1, name, &l1));
7560     if (!l1) {
7561       PetscCall(PetscSNPrintf(msg, sizeof(msg), "Label \"%s\" (#%" PetscInt_FMT " in dm0) not found in dm1", name, i));
7562       eq = PETSC_FALSE;
7563       break;
7564     }
7565     PetscCall(DMLabelCompare(comm, l0, l1, &eq, &msgInner));
7566     PetscCall(PetscStrncpy(msg, msgInner, sizeof(msg)));
7567     PetscCall(PetscFree(msgInner));
7568     if (!eq) break;
7569   }
7570   PetscCall(MPIU_Allreduce(MPI_IN_PLACE, &eq, 1, MPIU_BOOL, MPI_LAND, comm));
7571 finish:
7572   /* If message output arg not set, print to stderr */
7573   if (message) {
7574     *message = NULL;
7575     if (msg[0]) PetscCall(PetscStrallocpy(msg, message));
7576   } else {
7577     if (msg[0]) PetscCall(PetscSynchronizedFPrintf(comm, PETSC_STDERR, "[%d] %s\n", rank, msg));
7578     PetscCall(PetscSynchronizedFlush(comm, PETSC_STDERR));
7579   }
7580   /* If same output arg not ser and labels are not equal, throw error */
7581   if (equal) *equal = eq;
7582   else PetscCheck(eq, comm, PETSC_ERR_ARG_INCOMP, "DMLabels are not the same in dm0 and dm1");
7583   PetscFunctionReturn(PETSC_SUCCESS);
7584 }
7585 
7586 PetscErrorCode DMSetLabelValue_Fast(DM dm, DMLabel *label, const char name[], PetscInt point, PetscInt value)
7587 {
7588   PetscFunctionBegin;
7589   PetscAssertPointer(label, 2);
7590   if (!*label) {
7591     PetscCall(DMCreateLabel(dm, name));
7592     PetscCall(DMGetLabel(dm, name, label));
7593   }
7594   PetscCall(DMLabelSetValue(*label, point, value));
7595   PetscFunctionReturn(PETSC_SUCCESS);
7596 }
7597 
7598 /*
7599   Many mesh programs, such as Triangle and TetGen, allow only a single label for each mesh point. Therefore, we would
7600   like to encode all label IDs using a single, universal label. We can do this by assigning an integer to every
7601   (label, id) pair in the DM.
7602 
7603   However, a mesh point can have multiple labels, so we must separate all these values. We will assign a bit range to
7604   each label.
7605 */
7606 PetscErrorCode DMUniversalLabelCreate(DM dm, DMUniversalLabel *universal)
7607 {
7608   DMUniversalLabel ul;
7609   PetscBool       *active;
7610   PetscInt         pStart, pEnd, p, Nl, l, m;
7611 
7612   PetscFunctionBegin;
7613   PetscCall(PetscMalloc1(1, &ul));
7614   PetscCall(DMLabelCreate(PETSC_COMM_SELF, "universal", &ul->label));
7615   PetscCall(DMGetNumLabels(dm, &Nl));
7616   PetscCall(PetscCalloc1(Nl, &active));
7617   ul->Nl = 0;
7618   for (l = 0; l < Nl; ++l) {
7619     PetscBool   isdepth, iscelltype;
7620     const char *name;
7621 
7622     PetscCall(DMGetLabelName(dm, l, &name));
7623     PetscCall(PetscStrncmp(name, "depth", 6, &isdepth));
7624     PetscCall(PetscStrncmp(name, "celltype", 9, &iscelltype));
7625     active[l] = !(isdepth || iscelltype) ? PETSC_TRUE : PETSC_FALSE;
7626     if (active[l]) ++ul->Nl;
7627   }
7628   PetscCall(PetscCalloc5(ul->Nl, &ul->names, ul->Nl, &ul->indices, ul->Nl + 1, &ul->offsets, ul->Nl + 1, &ul->bits, ul->Nl, &ul->masks));
7629   ul->Nv = 0;
7630   for (l = 0, m = 0; l < Nl; ++l) {
7631     DMLabel     label;
7632     PetscInt    nv;
7633     const char *name;
7634 
7635     if (!active[l]) continue;
7636     PetscCall(DMGetLabelName(dm, l, &name));
7637     PetscCall(DMGetLabelByNum(dm, l, &label));
7638     PetscCall(DMLabelGetNumValues(label, &nv));
7639     PetscCall(PetscStrallocpy(name, &ul->names[m]));
7640     ul->indices[m] = l;
7641     ul->Nv += nv;
7642     ul->offsets[m + 1] = nv;
7643     ul->bits[m + 1]    = PetscCeilReal(PetscLog2Real(nv + 1));
7644     ++m;
7645   }
7646   for (l = 1; l <= ul->Nl; ++l) {
7647     ul->offsets[l] = ul->offsets[l - 1] + ul->offsets[l];
7648     ul->bits[l]    = ul->bits[l - 1] + ul->bits[l];
7649   }
7650   for (l = 0; l < ul->Nl; ++l) {
7651     PetscInt b;
7652 
7653     ul->masks[l] = 0;
7654     for (b = ul->bits[l]; b < ul->bits[l + 1]; ++b) ul->masks[l] |= 1 << b;
7655   }
7656   PetscCall(PetscMalloc1(ul->Nv, &ul->values));
7657   for (l = 0, m = 0; l < Nl; ++l) {
7658     DMLabel         label;
7659     IS              valueIS;
7660     const PetscInt *varr;
7661     PetscInt        nv, v;
7662 
7663     if (!active[l]) continue;
7664     PetscCall(DMGetLabelByNum(dm, l, &label));
7665     PetscCall(DMLabelGetNumValues(label, &nv));
7666     PetscCall(DMLabelGetValueIS(label, &valueIS));
7667     PetscCall(ISGetIndices(valueIS, &varr));
7668     for (v = 0; v < nv; ++v) ul->values[ul->offsets[m] + v] = varr[v];
7669     PetscCall(ISRestoreIndices(valueIS, &varr));
7670     PetscCall(ISDestroy(&valueIS));
7671     PetscCall(PetscSortInt(nv, &ul->values[ul->offsets[m]]));
7672     ++m;
7673   }
7674   PetscCall(DMPlexGetChart(dm, &pStart, &pEnd));
7675   for (p = pStart; p < pEnd; ++p) {
7676     PetscInt  uval   = 0;
7677     PetscBool marked = PETSC_FALSE;
7678 
7679     for (l = 0, m = 0; l < Nl; ++l) {
7680       DMLabel  label;
7681       PetscInt val, defval, loc, nv;
7682 
7683       if (!active[l]) continue;
7684       PetscCall(DMGetLabelByNum(dm, l, &label));
7685       PetscCall(DMLabelGetValue(label, p, &val));
7686       PetscCall(DMLabelGetDefaultValue(label, &defval));
7687       if (val == defval) {
7688         ++m;
7689         continue;
7690       }
7691       nv     = ul->offsets[m + 1] - ul->offsets[m];
7692       marked = PETSC_TRUE;
7693       PetscCall(PetscFindInt(val, nv, &ul->values[ul->offsets[m]], &loc));
7694       PetscCheck(loc >= 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Label value %" PetscInt_FMT " not found in compression array", val);
7695       uval += (loc + 1) << ul->bits[m];
7696       ++m;
7697     }
7698     if (marked) PetscCall(DMLabelSetValue(ul->label, p, uval));
7699   }
7700   PetscCall(PetscFree(active));
7701   *universal = ul;
7702   PetscFunctionReturn(PETSC_SUCCESS);
7703 }
7704 
7705 PetscErrorCode DMUniversalLabelDestroy(DMUniversalLabel *universal)
7706 {
7707   PetscInt l;
7708 
7709   PetscFunctionBegin;
7710   for (l = 0; l < (*universal)->Nl; ++l) PetscCall(PetscFree((*universal)->names[l]));
7711   PetscCall(DMLabelDestroy(&(*universal)->label));
7712   PetscCall(PetscFree5((*universal)->names, (*universal)->indices, (*universal)->offsets, (*universal)->bits, (*universal)->masks));
7713   PetscCall(PetscFree((*universal)->values));
7714   PetscCall(PetscFree(*universal));
7715   *universal = NULL;
7716   PetscFunctionReturn(PETSC_SUCCESS);
7717 }
7718 
7719 PetscErrorCode DMUniversalLabelGetLabel(DMUniversalLabel ul, DMLabel *ulabel)
7720 {
7721   PetscFunctionBegin;
7722   PetscAssertPointer(ulabel, 2);
7723   *ulabel = ul->label;
7724   PetscFunctionReturn(PETSC_SUCCESS);
7725 }
7726 
7727 PetscErrorCode DMUniversalLabelCreateLabels(DMUniversalLabel ul, PetscBool preserveOrder, DM dm)
7728 {
7729   PetscInt Nl = ul->Nl, l;
7730 
7731   PetscFunctionBegin;
7732   PetscValidHeaderSpecific(dm, DM_CLASSID, 3);
7733   for (l = 0; l < Nl; ++l) {
7734     if (preserveOrder) PetscCall(DMCreateLabelAtIndex(dm, ul->indices[l], ul->names[l]));
7735     else PetscCall(DMCreateLabel(dm, ul->names[l]));
7736   }
7737   if (preserveOrder) {
7738     for (l = 0; l < ul->Nl; ++l) {
7739       const char *name;
7740       PetscBool   match;
7741 
7742       PetscCall(DMGetLabelName(dm, ul->indices[l], &name));
7743       PetscCall(PetscStrcmp(name, ul->names[l], &match));
7744       PetscCheck(match, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Label %" PetscInt_FMT " name %s does not match new name %s", l, name, ul->names[l]);
7745     }
7746   }
7747   PetscFunctionReturn(PETSC_SUCCESS);
7748 }
7749 
7750 PetscErrorCode DMUniversalLabelSetLabelValue(DMUniversalLabel ul, DM dm, PetscBool useIndex, PetscInt p, PetscInt value)
7751 {
7752   PetscInt l;
7753 
7754   PetscFunctionBegin;
7755   for (l = 0; l < ul->Nl; ++l) {
7756     DMLabel  label;
7757     PetscInt lval = (value & ul->masks[l]) >> ul->bits[l];
7758 
7759     if (lval) {
7760       if (useIndex) PetscCall(DMGetLabelByNum(dm, ul->indices[l], &label));
7761       else PetscCall(DMGetLabel(dm, ul->names[l], &label));
7762       PetscCall(DMLabelSetValue(label, p, ul->values[ul->offsets[l] + lval - 1]));
7763     }
7764   }
7765   PetscFunctionReturn(PETSC_SUCCESS);
7766 }
7767 
7768 /*@
7769   DMGetCoarseDM - Get the coarse `DM`from which this `DM` was obtained by refinement
7770 
7771   Not Collective
7772 
7773   Input Parameter:
7774 . dm - The `DM` object
7775 
7776   Output Parameter:
7777 . cdm - The coarse `DM`
7778 
7779   Level: intermediate
7780 
7781 .seealso: [](ch_dmbase), `DM`, `DMSetCoarseDM()`, `DMCoarsen()`
7782 @*/
7783 PetscErrorCode DMGetCoarseDM(DM dm, DM *cdm)
7784 {
7785   PetscFunctionBegin;
7786   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
7787   PetscAssertPointer(cdm, 2);
7788   *cdm = dm->coarseMesh;
7789   PetscFunctionReturn(PETSC_SUCCESS);
7790 }
7791 
7792 /*@
7793   DMSetCoarseDM - Set the coarse `DM` from which this `DM` was obtained by refinement
7794 
7795   Input Parameters:
7796 + dm  - The `DM` object
7797 - cdm - The coarse `DM`
7798 
7799   Level: intermediate
7800 
7801   Note:
7802   Normally this is set automatically by `DMRefine()`
7803 
7804 .seealso: [](ch_dmbase), `DM`, `DMGetCoarseDM()`, `DMCoarsen()`, `DMSetRefine()`, `DMSetFineDM()`
7805 @*/
7806 PetscErrorCode DMSetCoarseDM(DM dm, DM cdm)
7807 {
7808   PetscFunctionBegin;
7809   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
7810   if (cdm) PetscValidHeaderSpecific(cdm, DM_CLASSID, 2);
7811   if (dm == cdm) cdm = NULL;
7812   PetscCall(PetscObjectReference((PetscObject)cdm));
7813   PetscCall(DMDestroy(&dm->coarseMesh));
7814   dm->coarseMesh = cdm;
7815   PetscFunctionReturn(PETSC_SUCCESS);
7816 }
7817 
7818 /*@
7819   DMGetFineDM - Get the fine mesh from which this `DM` was obtained by coarsening
7820 
7821   Input Parameter:
7822 . dm - The `DM` object
7823 
7824   Output Parameter:
7825 . fdm - The fine `DM`
7826 
7827   Level: intermediate
7828 
7829 .seealso: [](ch_dmbase), `DM`, `DMSetFineDM()`, `DMCoarsen()`, `DMRefine()`
7830 @*/
7831 PetscErrorCode DMGetFineDM(DM dm, DM *fdm)
7832 {
7833   PetscFunctionBegin;
7834   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
7835   PetscAssertPointer(fdm, 2);
7836   *fdm = dm->fineMesh;
7837   PetscFunctionReturn(PETSC_SUCCESS);
7838 }
7839 
7840 /*@
7841   DMSetFineDM - Set the fine mesh from which this was obtained by coarsening
7842 
7843   Input Parameters:
7844 + dm  - The `DM` object
7845 - fdm - The fine `DM`
7846 
7847   Level: developer
7848 
7849   Note:
7850   Normally this is set automatically by `DMCoarsen()`
7851 
7852 .seealso: [](ch_dmbase), `DM`, `DMGetFineDM()`, `DMCoarsen()`, `DMRefine()`
7853 @*/
7854 PetscErrorCode DMSetFineDM(DM dm, DM fdm)
7855 {
7856   PetscFunctionBegin;
7857   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
7858   if (fdm) PetscValidHeaderSpecific(fdm, DM_CLASSID, 2);
7859   if (dm == fdm) fdm = NULL;
7860   PetscCall(PetscObjectReference((PetscObject)fdm));
7861   PetscCall(DMDestroy(&dm->fineMesh));
7862   dm->fineMesh = fdm;
7863   PetscFunctionReturn(PETSC_SUCCESS);
7864 }
7865 
7866 /*@C
7867   DMAddBoundary - Add a boundary condition to a model represented by a `DM`
7868 
7869   Collective
7870 
7871   Input Parameters:
7872 + dm       - The `DM`, with a `PetscDS` that matches the problem being constrained
7873 . type     - The type of condition, e.g. `DM_BC_ESSENTIAL_ANALYTIC`, `DM_BC_ESSENTIAL_FIELD` (Dirichlet), or `DM_BC_NATURAL` (Neumann)
7874 . name     - The BC name
7875 . label    - The label defining constrained points
7876 . Nv       - The number of `DMLabel` values for constrained points
7877 . values   - An array of values for constrained points
7878 . field    - The field to constrain
7879 . Nc       - The number of constrained field components (0 will constrain all fields)
7880 . comps    - An array of constrained component numbers
7881 . bcFunc   - A pointwise function giving boundary values
7882 . bcFunc_t - A pointwise function giving the time deriative of the boundary values, or NULL
7883 - ctx      - An optional user context for bcFunc
7884 
7885   Output Parameter:
7886 . bd - (Optional) Boundary number
7887 
7888   Options Database Keys:
7889 + -bc_<boundary name> <num>      - Overrides the boundary ids
7890 - -bc_<boundary name>_comp <num> - Overrides the boundary components
7891 
7892   Level: intermediate
7893 
7894   Notes:
7895   Both bcFunc abd bcFunc_t will depend on the boundary condition type. If the type if `DM_BC_ESSENTIAL`, then the calling sequence is\:
7896 
7897 $ void bcFunc(PetscInt dim, PetscReal time, const PetscReal x[], PetscInt Nc, PetscScalar bcval[])
7898 
7899   If the type is `DM_BC_ESSENTIAL_FIELD` or other _FIELD value, then the calling sequence is\:
7900 
7901 .vb
7902   void bcFunc(PetscInt dim, PetscInt Nf, PetscInt NfAux,
7903               const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[],
7904               const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[],
7905               PetscReal time, const PetscReal x[], PetscScalar bcval[])
7906 .ve
7907 + dim - the spatial dimension
7908 . Nf - the number of fields
7909 . uOff - the offset into u[] and u_t[] for each field
7910 . uOff_x - the offset into u_x[] for each field
7911 . u - each field evaluated at the current point
7912 . u_t - the time derivative of each field evaluated at the current point
7913 . u_x - the gradient of each field evaluated at the current point
7914 . aOff - the offset into a[] and a_t[] for each auxiliary field
7915 . aOff_x - the offset into a_x[] for each auxiliary field
7916 . a - each auxiliary field evaluated at the current point
7917 . a_t - the time derivative of each auxiliary field evaluated at the current point
7918 . a_x - the gradient of auxiliary each field evaluated at the current point
7919 . t - current time
7920 . x - coordinates of the current point
7921 . numConstants - number of constant parameters
7922 . constants - constant parameters
7923 - bcval - output values at the current point
7924 
7925 .seealso: [](ch_dmbase), `DM`, `DSGetBoundary()`, `PetscDSAddBoundary()`
7926 @*/
7927 PetscErrorCode DMAddBoundary(DM dm, DMBoundaryConditionType type, const char name[], DMLabel label, PetscInt Nv, const PetscInt values[], PetscInt field, PetscInt Nc, const PetscInt comps[], void (*bcFunc)(void), void (*bcFunc_t)(void), void *ctx, PetscInt *bd)
7928 {
7929   PetscDS ds;
7930 
7931   PetscFunctionBegin;
7932   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
7933   PetscValidLogicalCollectiveEnum(dm, type, 2);
7934   PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 4);
7935   PetscValidLogicalCollectiveInt(dm, Nv, 5);
7936   PetscValidLogicalCollectiveInt(dm, field, 7);
7937   PetscValidLogicalCollectiveInt(dm, Nc, 8);
7938   PetscCheck(!dm->localSection, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONGSTATE, "Cannot add boundary to DM after creating local section");
7939   PetscCall(DMGetDS(dm, &ds));
7940   /* Complete label */
7941   if (label) {
7942     PetscObject  obj;
7943     PetscClassId id;
7944 
7945     PetscCall(DMGetField(dm, field, NULL, &obj));
7946     PetscCall(PetscObjectGetClassId(obj, &id));
7947     if (id == PETSCFE_CLASSID) {
7948       DM plex;
7949 
7950       PetscCall(DMConvert(dm, DMPLEX, &plex));
7951       if (plex) PetscCall(DMPlexLabelComplete(plex, label));
7952       PetscCall(DMDestroy(&plex));
7953     }
7954   }
7955   PetscCall(PetscDSAddBoundary(ds, type, name, label, Nv, values, field, Nc, comps, bcFunc, bcFunc_t, ctx, bd));
7956   PetscFunctionReturn(PETSC_SUCCESS);
7957 }
7958 
7959 /* TODO Remove this since now the structures are the same */
7960 static PetscErrorCode DMPopulateBoundary(DM dm)
7961 {
7962   PetscDS     ds;
7963   DMBoundary *lastnext;
7964   DSBoundary  dsbound;
7965 
7966   PetscFunctionBegin;
7967   PetscCall(DMGetDS(dm, &ds));
7968   dsbound = ds->boundary;
7969   if (dm->boundary) {
7970     DMBoundary next = dm->boundary;
7971 
7972     /* quick check to see if the PetscDS has changed */
7973     if (next->dsboundary == dsbound) PetscFunctionReturn(PETSC_SUCCESS);
7974     /* the PetscDS has changed: tear down and rebuild */
7975     while (next) {
7976       DMBoundary b = next;
7977 
7978       next = b->next;
7979       PetscCall(PetscFree(b));
7980     }
7981     dm->boundary = NULL;
7982   }
7983 
7984   lastnext = &(dm->boundary);
7985   while (dsbound) {
7986     DMBoundary dmbound;
7987 
7988     PetscCall(PetscNew(&dmbound));
7989     dmbound->dsboundary = dsbound;
7990     dmbound->label      = dsbound->label;
7991     /* push on the back instead of the front so that it is in the same order as in the PetscDS */
7992     *lastnext = dmbound;
7993     lastnext  = &(dmbound->next);
7994     dsbound   = dsbound->next;
7995   }
7996   PetscFunctionReturn(PETSC_SUCCESS);
7997 }
7998 
7999 /* TODO: missing manual page */
8000 PetscErrorCode DMIsBoundaryPoint(DM dm, PetscInt point, PetscBool *isBd)
8001 {
8002   DMBoundary b;
8003 
8004   PetscFunctionBegin;
8005   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
8006   PetscAssertPointer(isBd, 3);
8007   *isBd = PETSC_FALSE;
8008   PetscCall(DMPopulateBoundary(dm));
8009   b = dm->boundary;
8010   while (b && !(*isBd)) {
8011     DMLabel    label = b->label;
8012     DSBoundary dsb   = b->dsboundary;
8013     PetscInt   i;
8014 
8015     if (label) {
8016       for (i = 0; i < dsb->Nv && !(*isBd); ++i) PetscCall(DMLabelStratumHasPoint(label, dsb->values[i], point, isBd));
8017     }
8018     b = b->next;
8019   }
8020   PetscFunctionReturn(PETSC_SUCCESS);
8021 }
8022 
8023 /*@C
8024   DMProjectFunction - This projects the given function into the function space provided by a `DM`, putting the coefficients in a global vector.
8025 
8026   Collective
8027 
8028   Input Parameters:
8029 + dm    - The `DM`
8030 . time  - The time
8031 . funcs - The coordinate functions to evaluate, one per field
8032 . ctxs  - Optional array of contexts to pass to each coordinate function.  ctxs itself may be null.
8033 - mode  - The insertion mode for values
8034 
8035   Output Parameter:
8036 . X - vector
8037 
8038   Calling sequence of `funcs`:
8039 + dim  - The spatial dimension
8040 . time - The time at which to sample
8041 . x    - The coordinates
8042 . Nc   - The number of components
8043 . u    - The output field values
8044 - ctx  - optional user-defined function context
8045 
8046   Level: developer
8047 
8048   Developer Notes:
8049   This API is specific to only particular usage of `DM`
8050 
8051   The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation.
8052 
8053 .seealso: [](ch_dmbase), `DM`, `DMProjectFunctionLocal()`, `DMProjectFunctionLabel()`, `DMComputeL2Diff()`
8054 @*/
8055 PetscErrorCode DMProjectFunction(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt dim, PetscReal time, const PetscReal x[], PetscInt Nc, PetscScalar *u, void *ctx), void **ctxs, InsertMode mode, Vec X)
8056 {
8057   Vec localX;
8058 
8059   PetscFunctionBegin;
8060   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
8061   PetscCall(PetscLogEventBegin(DM_ProjectFunction, dm, X, 0, 0));
8062   PetscCall(DMGetLocalVector(dm, &localX));
8063   PetscCall(VecSet(localX, 0.));
8064   PetscCall(DMProjectFunctionLocal(dm, time, funcs, ctxs, mode, localX));
8065   PetscCall(DMLocalToGlobalBegin(dm, localX, mode, X));
8066   PetscCall(DMLocalToGlobalEnd(dm, localX, mode, X));
8067   PetscCall(DMRestoreLocalVector(dm, &localX));
8068   PetscCall(PetscLogEventEnd(DM_ProjectFunction, dm, X, 0, 0));
8069   PetscFunctionReturn(PETSC_SUCCESS);
8070 }
8071 
8072 /*@C
8073   DMProjectFunctionLocal - This projects the given function into the function space provided by a `DM`, putting the coefficients in a local vector.
8074 
8075   Not Collective
8076 
8077   Input Parameters:
8078 + dm    - The `DM`
8079 . time  - The time
8080 . funcs - The coordinate functions to evaluate, one per field
8081 . ctxs  - Optional array of contexts to pass to each coordinate function.  ctxs itself may be null.
8082 - mode  - The insertion mode for values
8083 
8084   Output Parameter:
8085 . localX - vector
8086 
8087   Calling sequence of `funcs`:
8088 + dim  - The spatial dimension
8089 . time - The current timestep
8090 . x    - The coordinates
8091 . Nc   - The number of components
8092 . u    - The output field values
8093 - ctx  - optional user-defined function context
8094 
8095   Level: developer
8096 
8097   Developer Notes:
8098   This API is specific to only particular usage of `DM`
8099 
8100   The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation.
8101 
8102 .seealso: [](ch_dmbase), `DM`, `DMProjectFunction()`, `DMProjectFunctionLabel()`, `DMComputeL2Diff()`
8103 @*/
8104 PetscErrorCode DMProjectFunctionLocal(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt dim, PetscReal time, const PetscReal x[], PetscInt Nc, PetscScalar *u, void *ctx), void **ctxs, InsertMode mode, Vec localX)
8105 {
8106   PetscFunctionBegin;
8107   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
8108   PetscValidHeaderSpecific(localX, VEC_CLASSID, 6);
8109   PetscUseTypeMethod(dm, projectfunctionlocal, time, funcs, ctxs, mode, localX);
8110   PetscFunctionReturn(PETSC_SUCCESS);
8111 }
8112 
8113 /*@C
8114   DMProjectFunctionLabel - This projects the given function into the function space provided by the `DM`, putting the coefficients in a global vector, setting values only for points in the given label.
8115 
8116   Collective
8117 
8118   Input Parameters:
8119 + dm     - The `DM`
8120 . time   - The time
8121 . numIds - The number of ids
8122 . ids    - The ids
8123 . Nc     - The number of components
8124 . comps  - The components
8125 . label  - The `DMLabel` selecting the portion of the mesh for projection
8126 . funcs  - The coordinate functions to evaluate, one per field
8127 . ctxs   - Optional array of contexts to pass to each coordinate function.  ctxs may be null.
8128 - mode   - The insertion mode for values
8129 
8130   Output Parameter:
8131 . X - vector
8132 
8133   Calling sequence of `funcs`:
8134 + dim  - The spatial dimension
8135 . time - The current timestep
8136 . x    - The coordinates
8137 . Nc   - The number of components
8138 . u    - The output field values
8139 - ctx  - optional user-defined function context
8140 
8141   Level: developer
8142 
8143   Developer Notes:
8144   This API is specific to only particular usage of `DM`
8145 
8146   The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation.
8147 
8148 .seealso: [](ch_dmbase), `DM`, `DMProjectFunction()`, `DMProjectFunctionLocal()`, `DMProjectFunctionLabelLocal()`, `DMComputeL2Diff()`
8149 @*/
8150 PetscErrorCode DMProjectFunctionLabel(DM dm, PetscReal time, DMLabel label, PetscInt numIds, const PetscInt ids[], PetscInt Nc, const PetscInt comps[], PetscErrorCode (**funcs)(PetscInt dim, PetscReal time, const PetscReal x[], PetscInt Nc, PetscScalar *u, void *ctx), void **ctxs, InsertMode mode, Vec X)
8151 {
8152   Vec localX;
8153 
8154   PetscFunctionBegin;
8155   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
8156   PetscCall(DMGetLocalVector(dm, &localX));
8157   PetscCall(VecSet(localX, 0.));
8158   PetscCall(DMProjectFunctionLabelLocal(dm, time, label, numIds, ids, Nc, comps, funcs, ctxs, mode, localX));
8159   PetscCall(DMLocalToGlobalBegin(dm, localX, mode, X));
8160   PetscCall(DMLocalToGlobalEnd(dm, localX, mode, X));
8161   PetscCall(DMRestoreLocalVector(dm, &localX));
8162   PetscFunctionReturn(PETSC_SUCCESS);
8163 }
8164 
8165 /*@C
8166   DMProjectFunctionLabelLocal - This projects the given function into the function space provided by the `DM`, putting the coefficients in a local vector, setting values only for points in the given label.
8167 
8168   Not Collective
8169 
8170   Input Parameters:
8171 + dm     - The `DM`
8172 . time   - The time
8173 . label  - The `DMLabel` selecting the portion of the mesh for projection
8174 . numIds - The number of ids
8175 . ids    - The ids
8176 . Nc     - The number of components
8177 . comps  - The components
8178 . funcs  - The coordinate functions to evaluate, one per field
8179 . ctxs   - Optional array of contexts to pass to each coordinate function.  ctxs itself may be null.
8180 - mode   - The insertion mode for values
8181 
8182   Output Parameter:
8183 . localX - vector
8184 
8185   Calling sequence of `funcs`:
8186 + dim  - The spatial dimension
8187 . time - The current time
8188 . x    - The coordinates
8189 . Nc   - The number of components
8190 . u    - The output field values
8191 - ctx  - optional user-defined function context
8192 
8193   Level: developer
8194 
8195   Developer Notes:
8196   This API is specific to only particular usage of `DM`
8197 
8198   The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation.
8199 
8200 .seealso: [](ch_dmbase), `DM`, `DMProjectFunction()`, `DMProjectFunctionLocal()`, `DMProjectFunctionLabel()`, `DMComputeL2Diff()`
8201 @*/
8202 PetscErrorCode DMProjectFunctionLabelLocal(DM dm, PetscReal time, DMLabel label, PetscInt numIds, const PetscInt ids[], PetscInt Nc, const PetscInt comps[], PetscErrorCode (**funcs)(PetscInt dim, PetscReal time, const PetscReal x[], PetscInt Nc, PetscScalar *u, void *ctx), void **ctxs, InsertMode mode, Vec localX)
8203 {
8204   PetscFunctionBegin;
8205   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
8206   PetscValidHeaderSpecific(localX, VEC_CLASSID, 11);
8207   PetscUseTypeMethod(dm, projectfunctionlabellocal, time, label, numIds, ids, Nc, comps, funcs, ctxs, mode, localX);
8208   PetscFunctionReturn(PETSC_SUCCESS);
8209 }
8210 
8211 /*@C
8212   DMProjectFieldLocal - This projects the given function of the input fields into the function space provided by the `DM`, putting the coefficients in a local vector.
8213 
8214   Not Collective
8215 
8216   Input Parameters:
8217 + dm     - The `DM`
8218 . time   - The time
8219 . localU - The input field vector; may be `NULL` if projection is defined purely by coordinates
8220 . funcs  - The functions to evaluate, one per field
8221 - mode   - The insertion mode for values
8222 
8223   Output Parameter:
8224 . localX - The output vector
8225 
8226   Calling sequence of `funcs`:
8227 + dim          - The spatial dimension
8228 . Nf           - The number of input fields
8229 . NfAux        - The number of input auxiliary fields
8230 . uOff         - The offset of each field in u[]
8231 . uOff_x       - The offset of each field in u_x[]
8232 . u            - The field values at this point in space
8233 . u_t          - The field time derivative at this point in space (or NULL)
8234 . u_x          - The field derivatives at this point in space
8235 . aOff         - The offset of each auxiliary field in u[]
8236 . aOff_x       - The offset of each auxiliary field in u_x[]
8237 . a            - The auxiliary field values at this point in space
8238 . a_t          - The auxiliary field time derivative at this point in space (or NULL)
8239 . a_x          - The auxiliary field derivatives at this point in space
8240 . t            - The current time
8241 . x            - The coordinates of this point
8242 . numConstants - The number of constants
8243 . constants    - The value of each constant
8244 - f            - The value of the function at this point in space
8245 
8246   Note:
8247   There are three different `DM`s that potentially interact in this function. The output `DM`, dm, specifies the layout of the values calculates by funcs.
8248   The input `DM`, attached to U, may be different. For example, you can input the solution over the full domain, but output over a piece of the boundary, or
8249   a subdomain. You can also output a different number of fields than the input, with different discretizations. Last the auxiliary `DM`, attached to the
8250   auxiliary field vector, which is attached to dm, can also be different. It can have a different topology, number of fields, and discretizations.
8251 
8252   Level: intermediate
8253 
8254   Developer Notes:
8255   This API is specific to only particular usage of `DM`
8256 
8257   The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation.
8258 
8259 .seealso: [](ch_dmbase), `DM`, `DMProjectField()`, `DMProjectFieldLabelLocal()`,
8260 `DMProjectFunction()`, `DMComputeL2Diff()`
8261 @*/
8262 PetscErrorCode DMProjectFieldLocal(DM dm, PetscReal time, Vec localU, void (**funcs)(PetscInt dim, PetscInt Nf, PetscInt NfAux, const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[], const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[], PetscReal t, const PetscReal x[], PetscInt numConstants, const PetscScalar constants[], PetscScalar f[]), InsertMode mode, Vec localX)
8263 {
8264   PetscFunctionBegin;
8265   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
8266   if (localU) PetscValidHeaderSpecific(localU, VEC_CLASSID, 3);
8267   PetscValidHeaderSpecific(localX, VEC_CLASSID, 6);
8268   PetscUseTypeMethod(dm, projectfieldlocal, time, localU, funcs, mode, localX);
8269   PetscFunctionReturn(PETSC_SUCCESS);
8270 }
8271 
8272 /*@C
8273   DMProjectFieldLabelLocal - This projects the given function of the input fields into the function space provided, putting the coefficients in a local vector, calculating only over the portion of the domain specified by the label.
8274 
8275   Not Collective
8276 
8277   Input Parameters:
8278 + dm     - The `DM`
8279 . time   - The time
8280 . label  - The `DMLabel` marking the portion of the domain to output
8281 . numIds - The number of label ids to use
8282 . ids    - The label ids to use for marking
8283 . Nc     - The number of components to set in the output, or `PETSC_DETERMINE` for all components
8284 . comps  - The components to set in the output, or `NULL` for all components
8285 . localU - The input field vector
8286 . funcs  - The functions to evaluate, one per field
8287 - mode   - The insertion mode for values
8288 
8289   Output Parameter:
8290 . localX - The output vector
8291 
8292   Calling sequence of `funcs`:
8293 + dim          - The spatial dimension
8294 . Nf           - The number of input fields
8295 . NfAux        - The number of input auxiliary fields
8296 . uOff         - The offset of each field in u[]
8297 . uOff_x       - The offset of each field in u_x[]
8298 . u            - The field values at this point in space
8299 . u_t          - The field time derivative at this point in space (or NULL)
8300 . u_x          - The field derivatives at this point in space
8301 . aOff         - The offset of each auxiliary field in u[]
8302 . aOff_x       - The offset of each auxiliary field in u_x[]
8303 . a            - The auxiliary field values at this point in space
8304 . a_t          - The auxiliary field time derivative at this point in space (or NULL)
8305 . a_x          - The auxiliary field derivatives at this point in space
8306 . t            - The current time
8307 . x            - The coordinates of this point
8308 . numConstants - The number of constants
8309 . constants    - The value of each constant
8310 - f            - The value of the function at this point in space
8311 
8312   Note:
8313   There are three different `DM`s that potentially interact in this function. The output `DM`, dm, specifies the layout of the values calculates by funcs.
8314   The input `DM`, attached to localU, may be different. For example, you can input the solution over the full domain, but output over a piece of the boundary, or
8315   a subdomain. You can also output a different number of fields than the input, with different discretizations. Last the auxiliary `DM`, attached to the
8316   auxiliary field vector, which is attached to dm, can also be different. It can have a different topology, number of fields, and discretizations.
8317 
8318   Level: intermediate
8319 
8320   Developer Notes:
8321   This API is specific to only particular usage of `DM`
8322 
8323   The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation.
8324 
8325 .seealso: [](ch_dmbase), `DM`, `DMProjectField()`, `DMProjectFieldLabel()`, `DMProjectFunction()`, `DMComputeL2Diff()`
8326 @*/
8327 PetscErrorCode DMProjectFieldLabelLocal(DM dm, PetscReal time, DMLabel label, PetscInt numIds, const PetscInt ids[], PetscInt Nc, const PetscInt comps[], Vec localU, void (**funcs)(PetscInt dim, PetscInt Nf, PetscInt NfAux, const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[], const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[], PetscReal t, const PetscReal x[], PetscInt numConstants, const PetscScalar constants[], PetscScalar f[]), InsertMode mode, Vec localX)
8328 {
8329   PetscFunctionBegin;
8330   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
8331   PetscValidHeaderSpecific(localU, VEC_CLASSID, 8);
8332   PetscValidHeaderSpecific(localX, VEC_CLASSID, 11);
8333   PetscUseTypeMethod(dm, projectfieldlabellocal, time, label, numIds, ids, Nc, comps, localU, funcs, mode, localX);
8334   PetscFunctionReturn(PETSC_SUCCESS);
8335 }
8336 
8337 /*@C
8338   DMProjectFieldLabel - This projects the given function of the input fields into the function space provided, putting the coefficients in a global vector, calculating only over the portion of the domain specified by the label.
8339 
8340   Not Collective
8341 
8342   Input Parameters:
8343 + dm     - The `DM`
8344 . time   - The time
8345 . label  - The `DMLabel` marking the portion of the domain to output
8346 . numIds - The number of label ids to use
8347 . ids    - The label ids to use for marking
8348 . Nc     - The number of components to set in the output, or `PETSC_DETERMINE` for all components
8349 . comps  - The components to set in the output, or `NULL` for all components
8350 . U      - The input field vector
8351 . funcs  - The functions to evaluate, one per field
8352 - mode   - The insertion mode for values
8353 
8354   Output Parameter:
8355 . X - The output vector
8356 
8357   Calling sequence of `funcs`:
8358 + dim          - The spatial dimension
8359 . Nf           - The number of input fields
8360 . NfAux        - The number of input auxiliary fields
8361 . uOff         - The offset of each field in u[]
8362 . uOff_x       - The offset of each field in u_x[]
8363 . u            - The field values at this point in space
8364 . u_t          - The field time derivative at this point in space (or NULL)
8365 . u_x          - The field derivatives at this point in space
8366 . aOff         - The offset of each auxiliary field in u[]
8367 . aOff_x       - The offset of each auxiliary field in u_x[]
8368 . a            - The auxiliary field values at this point in space
8369 . a_t          - The auxiliary field time derivative at this point in space (or NULL)
8370 . a_x          - The auxiliary field derivatives at this point in space
8371 . t            - The current time
8372 . x            - The coordinates of this point
8373 . numConstants - The number of constants
8374 . constants    - The value of each constant
8375 - f            - The value of the function at this point in space
8376 
8377   Note:
8378   There are three different `DM`s that potentially interact in this function. The output `DM`, dm, specifies the layout of the values calculates by funcs.
8379   The input `DM`, attached to U, may be different. For example, you can input the solution over the full domain, but output over a piece of the boundary, or
8380   a subdomain. You can also output a different number of fields than the input, with different discretizations. Last the auxiliary `DM`, attached to the
8381   auxiliary field vector, which is attached to dm, can also be different. It can have a different topology, number of fields, and discretizations.
8382 
8383   Level: intermediate
8384 
8385   Developer Notes:
8386   This API is specific to only particular usage of `DM`
8387 
8388   The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation.
8389 
8390 .seealso: [](ch_dmbase), `DM`, `DMProjectField()`, `DMProjectFieldLabelLocal()`, `DMProjectFunction()`, `DMComputeL2Diff()`
8391 @*/
8392 PetscErrorCode DMProjectFieldLabel(DM dm, PetscReal time, DMLabel label, PetscInt numIds, const PetscInt ids[], PetscInt Nc, const PetscInt comps[], Vec U, void (**funcs)(PetscInt dim, PetscInt Nf, PetscInt NfAux, const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[], const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[], PetscReal t, const PetscReal x[], PetscInt numConstants, const PetscScalar constants[], PetscScalar f[]), InsertMode mode, Vec X)
8393 {
8394   DM  dmIn;
8395   Vec localU, localX;
8396 
8397   PetscFunctionBegin;
8398   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
8399   PetscCall(VecGetDM(U, &dmIn));
8400   PetscCall(DMGetLocalVector(dmIn, &localU));
8401   PetscCall(DMGetLocalVector(dm, &localX));
8402   PetscCall(VecSet(localX, 0.));
8403   PetscCall(DMGlobalToLocalBegin(dmIn, U, mode, localU));
8404   PetscCall(DMGlobalToLocalEnd(dmIn, U, mode, localU));
8405   PetscCall(DMProjectFieldLabelLocal(dm, time, label, numIds, ids, Nc, comps, localU, funcs, mode, localX));
8406   PetscCall(DMLocalToGlobalBegin(dm, localX, mode, X));
8407   PetscCall(DMLocalToGlobalEnd(dm, localX, mode, X));
8408   PetscCall(DMRestoreLocalVector(dm, &localX));
8409   PetscCall(DMRestoreLocalVector(dmIn, &localU));
8410   PetscFunctionReturn(PETSC_SUCCESS);
8411 }
8412 
8413 /*@C
8414   DMProjectBdFieldLabelLocal - This projects the given function of the input fields into the function space provided, putting the coefficients in a local vector, calculating only over the portion of the domain boundary specified by the label.
8415 
8416   Not Collective
8417 
8418   Input Parameters:
8419 + dm     - The `DM`
8420 . time   - The time
8421 . label  - The `DMLabel` marking the portion of the domain boundary to output
8422 . numIds - The number of label ids to use
8423 . ids    - The label ids to use for marking
8424 . Nc     - The number of components to set in the output, or `PETSC_DETERMINE` for all components
8425 . comps  - The components to set in the output, or `NULL` for all components
8426 . localU - The input field vector
8427 . funcs  - The functions to evaluate, one per field
8428 - mode   - The insertion mode for values
8429 
8430   Output Parameter:
8431 . localX - The output vector
8432 
8433   Calling sequence of `funcs`:
8434 + dim          - The spatial dimension
8435 . Nf           - The number of input fields
8436 . NfAux        - The number of input auxiliary fields
8437 . uOff         - The offset of each field in u[]
8438 . uOff_x       - The offset of each field in u_x[]
8439 . u            - The field values at this point in space
8440 . u_t          - The field time derivative at this point in space (or NULL)
8441 . u_x          - The field derivatives at this point in space
8442 . aOff         - The offset of each auxiliary field in u[]
8443 . aOff_x       - The offset of each auxiliary field in u_x[]
8444 . a            - The auxiliary field values at this point in space
8445 . a_t          - The auxiliary field time derivative at this point in space (or NULL)
8446 . a_x          - The auxiliary field derivatives at this point in space
8447 . t            - The current time
8448 . x            - The coordinates of this point
8449 . n            - The face normal
8450 . numConstants - The number of constants
8451 . constants    - The value of each constant
8452 - f            - The value of the function at this point in space
8453 
8454   Note:
8455   There are three different `DM`s that potentially interact in this function. The output `DM`, dm, specifies the layout of the values calculates by funcs.
8456   The input `DM`, attached to U, may be different. For example, you can input the solution over the full domain, but output over a piece of the boundary, or
8457   a subdomain. You can also output a different number of fields than the input, with different discretizations. Last the auxiliary `DM`, attached to the
8458   auxiliary field vector, which is attached to dm, can also be different. It can have a different topology, number of fields, and discretizations.
8459 
8460   Level: intermediate
8461 
8462   Developer Notes:
8463   This API is specific to only particular usage of `DM`
8464 
8465   The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation.
8466 
8467 .seealso: [](ch_dmbase), `DM`, `DMProjectField()`, `DMProjectFieldLabelLocal()`, `DMProjectFunction()`, `DMComputeL2Diff()`
8468 @*/
8469 PetscErrorCode DMProjectBdFieldLabelLocal(DM dm, PetscReal time, DMLabel label, PetscInt numIds, const PetscInt ids[], PetscInt Nc, const PetscInt comps[], Vec localU, void (**funcs)(PetscInt dim, PetscInt Nf, PetscInt NfAux, const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[], const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[], PetscReal t, const PetscReal x[], const PetscReal n[], PetscInt numConstants, const PetscScalar constants[], PetscScalar f[]), InsertMode mode, Vec localX)
8470 {
8471   PetscFunctionBegin;
8472   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
8473   PetscValidHeaderSpecific(localU, VEC_CLASSID, 8);
8474   PetscValidHeaderSpecific(localX, VEC_CLASSID, 11);
8475   PetscUseTypeMethod(dm, projectbdfieldlabellocal, time, label, numIds, ids, Nc, comps, localU, funcs, mode, localX);
8476   PetscFunctionReturn(PETSC_SUCCESS);
8477 }
8478 
8479 /*@C
8480   DMComputeL2Diff - This function computes the L_2 difference between a function u and an FEM interpolant solution u_h.
8481 
8482   Collective
8483 
8484   Input Parameters:
8485 + dm    - The `DM`
8486 . time  - The time
8487 . funcs - The functions to evaluate for each field component
8488 . ctxs  - Optional array of contexts to pass to each function, or NULL.
8489 - X     - The coefficient vector u_h, a global vector
8490 
8491   Output Parameter:
8492 . diff - The diff ||u - u_h||_2
8493 
8494   Level: developer
8495 
8496   Developer Notes:
8497   This API is specific to only particular usage of `DM`
8498 
8499   The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation.
8500 
8501 .seealso: [](ch_dmbase), `DM`, `DMProjectFunction()`, `DMComputeL2FieldDiff()`, `DMComputeL2GradientDiff()`
8502 @*/
8503 PetscErrorCode DMComputeL2Diff(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal[], PetscInt, PetscScalar *, void *), void **ctxs, Vec X, PetscReal *diff)
8504 {
8505   PetscFunctionBegin;
8506   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
8507   PetscValidHeaderSpecific(X, VEC_CLASSID, 5);
8508   PetscUseTypeMethod(dm, computel2diff, time, funcs, ctxs, X, diff);
8509   PetscFunctionReturn(PETSC_SUCCESS);
8510 }
8511 
8512 /*@C
8513   DMComputeL2GradientDiff - This function computes the L_2 difference between the gradient of a function u and an FEM interpolant solution grad u_h.
8514 
8515   Collective
8516 
8517   Input Parameters:
8518 + dm    - The `DM`
8519 . time  - The time
8520 . funcs - The gradient functions to evaluate for each field component
8521 . ctxs  - Optional array of contexts to pass to each function, or NULL.
8522 . X     - The coefficient vector u_h, a global vector
8523 - n     - The vector to project along
8524 
8525   Output Parameter:
8526 . diff - The diff ||(grad u - grad u_h) . n||_2
8527 
8528   Level: developer
8529 
8530   Developer Notes:
8531   This API is specific to only particular usage of `DM`
8532 
8533   The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation.
8534 
8535 .seealso: [](ch_dmbase), `DM`, `DMProjectFunction()`, `DMComputeL2Diff()`, `DMComputeL2FieldDiff()`
8536 @*/
8537 PetscErrorCode DMComputeL2GradientDiff(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal[], const PetscReal[], PetscInt, PetscScalar *, void *), void **ctxs, Vec X, const PetscReal n[], PetscReal *diff)
8538 {
8539   PetscFunctionBegin;
8540   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
8541   PetscValidHeaderSpecific(X, VEC_CLASSID, 5);
8542   PetscUseTypeMethod(dm, computel2gradientdiff, time, funcs, ctxs, X, n, diff);
8543   PetscFunctionReturn(PETSC_SUCCESS);
8544 }
8545 
8546 /*@C
8547   DMComputeL2FieldDiff - This function computes the L_2 difference between a function u and an FEM interpolant solution u_h, separated into field components.
8548 
8549   Collective
8550 
8551   Input Parameters:
8552 + dm    - The `DM`
8553 . time  - The time
8554 . funcs - The functions to evaluate for each field component
8555 . ctxs  - Optional array of contexts to pass to each function, or NULL.
8556 - X     - The coefficient vector u_h, a global vector
8557 
8558   Output Parameter:
8559 . diff - The array of differences, ||u^f - u^f_h||_2
8560 
8561   Level: developer
8562 
8563   Developer Notes:
8564   This API is specific to only particular usage of `DM`
8565 
8566   The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation.
8567 
8568 .seealso: [](ch_dmbase), `DM`, `DMProjectFunction()`, `DMComputeL2GradientDiff()`
8569 @*/
8570 PetscErrorCode DMComputeL2FieldDiff(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal[], PetscInt, PetscScalar *, void *), void **ctxs, Vec X, PetscReal diff[])
8571 {
8572   PetscFunctionBegin;
8573   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
8574   PetscValidHeaderSpecific(X, VEC_CLASSID, 5);
8575   PetscUseTypeMethod(dm, computel2fielddiff, time, funcs, ctxs, X, diff);
8576   PetscFunctionReturn(PETSC_SUCCESS);
8577 }
8578 
8579 /*@C
8580   DMGetNeighbors - Gets an array containing the MPI ranks of all the processes neighbors
8581 
8582   Not Collective
8583 
8584   Input Parameter:
8585 . dm - The `DM`
8586 
8587   Output Parameters:
8588 + nranks - the number of neighbours
8589 - ranks  - the neighbors ranks
8590 
8591   Level: beginner
8592 
8593   Note:
8594   Do not free the array, it is freed when the `DM` is destroyed.
8595 
8596 .seealso: [](ch_dmbase), `DM`, `DMDAGetNeighbors()`, `PetscSFGetRootRanks()`
8597 @*/
8598 PetscErrorCode DMGetNeighbors(DM dm, PetscInt *nranks, const PetscMPIInt *ranks[])
8599 {
8600   PetscFunctionBegin;
8601   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
8602   PetscUseTypeMethod(dm, getneighbors, nranks, ranks);
8603   PetscFunctionReturn(PETSC_SUCCESS);
8604 }
8605 
8606 #include <petsc/private/matimpl.h> /* Needed because of coloring->ctype below */
8607 
8608 /*
8609     Converts the input vector to a ghosted vector and then calls the standard coloring code.
8610     This must be a different function because it requires DM which is not defined in the Mat library
8611 */
8612 static PetscErrorCode MatFDColoringApply_AIJDM(Mat J, MatFDColoring coloring, Vec x1, void *sctx)
8613 {
8614   PetscFunctionBegin;
8615   if (coloring->ctype == IS_COLORING_LOCAL) {
8616     Vec x1local;
8617     DM  dm;
8618     PetscCall(MatGetDM(J, &dm));
8619     PetscCheck(dm, PetscObjectComm((PetscObject)J), PETSC_ERR_ARG_INCOMP, "IS_COLORING_LOCAL requires a DM");
8620     PetscCall(DMGetLocalVector(dm, &x1local));
8621     PetscCall(DMGlobalToLocalBegin(dm, x1, INSERT_VALUES, x1local));
8622     PetscCall(DMGlobalToLocalEnd(dm, x1, INSERT_VALUES, x1local));
8623     x1 = x1local;
8624   }
8625   PetscCall(MatFDColoringApply_AIJ(J, coloring, x1, sctx));
8626   if (coloring->ctype == IS_COLORING_LOCAL) {
8627     DM dm;
8628     PetscCall(MatGetDM(J, &dm));
8629     PetscCall(DMRestoreLocalVector(dm, &x1));
8630   }
8631   PetscFunctionReturn(PETSC_SUCCESS);
8632 }
8633 
8634 /*@
8635   MatFDColoringUseDM - allows a `MatFDColoring` object to use the `DM` associated with the matrix to compute a `IS_COLORING_LOCAL` coloring
8636 
8637   Input Parameters:
8638 + coloring   - The matrix to get the `DM` from
8639 - fdcoloring - the `MatFDColoring` object
8640 
8641   Level: advanced
8642 
8643   Developer Notes:
8644   this routine exists because the PETSc `Mat` library does not know about the `DM` objects
8645 
8646 .seealso: [](ch_dmbase), `DM`, `MatFDColoring`, `MatFDColoringCreate()`, `ISColoringType`
8647 @*/
8648 PetscErrorCode MatFDColoringUseDM(Mat coloring, MatFDColoring fdcoloring)
8649 {
8650   PetscFunctionBegin;
8651   coloring->ops->fdcoloringapply = MatFDColoringApply_AIJDM;
8652   PetscFunctionReturn(PETSC_SUCCESS);
8653 }
8654 
8655 /*@
8656   DMGetCompatibility - determine if two `DM`s are compatible
8657 
8658   Collective
8659 
8660   Input Parameters:
8661 + dm1 - the first `DM`
8662 - dm2 - the second `DM`
8663 
8664   Output Parameters:
8665 + compatible - whether or not the two `DM`s are compatible
8666 - set        - whether or not the compatible value was actually determined and set
8667 
8668   Level: advanced
8669 
8670   Notes:
8671   Two `DM`s are deemed compatible if they represent the same parallel decomposition
8672   of the same topology. This implies that the section (field data) on one
8673   "makes sense" with respect to the topology and parallel decomposition of the other.
8674   Loosely speaking, compatible `DM`s represent the same domain and parallel
8675   decomposition, but hold different data.
8676 
8677   Typically, one would confirm compatibility if intending to simultaneously iterate
8678   over a pair of vectors obtained from different `DM`s.
8679 
8680   For example, two `DMDA` objects are compatible if they have the same local
8681   and global sizes and the same stencil width. They can have different numbers
8682   of degrees of freedom per node. Thus, one could use the node numbering from
8683   either `DM` in bounds for a loop over vectors derived from either `DM`.
8684 
8685   Consider the operation of summing data living on a 2-dof `DMDA` to data living
8686   on a 1-dof `DMDA`, which should be compatible, as in the following snippet.
8687 .vb
8688   ...
8689   PetscCall(DMGetCompatibility(da1,da2,&compatible,&set));
8690   if (set && compatible)  {
8691     PetscCall(DMDAVecGetArrayDOF(da1,vec1,&arr1));
8692     PetscCall(DMDAVecGetArrayDOF(da2,vec2,&arr2));
8693     PetscCall(DMDAGetCorners(da1,&x,&y,NULL,&m,&n,NULL));
8694     for (j=y; j<y+n; ++j) {
8695       for (i=x; i<x+m, ++i) {
8696         arr1[j][i][0] = arr2[j][i][0] + arr2[j][i][1];
8697       }
8698     }
8699     PetscCall(DMDAVecRestoreArrayDOF(da1,vec1,&arr1));
8700     PetscCall(DMDAVecRestoreArrayDOF(da2,vec2,&arr2));
8701   } else {
8702     SETERRQ(PetscObjectComm((PetscObject)da1,PETSC_ERR_ARG_INCOMP,"DMDA objects incompatible");
8703   }
8704   ...
8705 .ve
8706 
8707   Checking compatibility might be expensive for a given implementation of `DM`,
8708   or might be impossible to unambiguously confirm or deny. For this reason,
8709   this function may decline to determine compatibility, and hence users should
8710   always check the "set" output parameter.
8711 
8712   A `DM` is always compatible with itself.
8713 
8714   In the current implementation, `DM`s which live on "unequal" communicators
8715   (MPI_UNEQUAL in the terminology of MPI_Comm_compare()) are always deemed
8716   incompatible.
8717 
8718   This function is labeled "Collective," as information about all subdomains
8719   is required on each rank. However, in `DM` implementations which store all this
8720   information locally, this function may be merely "Logically Collective".
8721 
8722   Developer Notes:
8723   Compatibility is assumed to be a symmetric concept; `DM` A is compatible with `DM` B
8724   iff B is compatible with A. Thus, this function checks the implementations
8725   of both dm and dmc (if they are of different types), attempting to determine
8726   compatibility. It is left to `DM` implementers to ensure that symmetry is
8727   preserved. The simplest way to do this is, when implementing type-specific
8728   logic for this function, is to check for existing logic in the implementation
8729   of other `DM` types and let *set = PETSC_FALSE if found.
8730 
8731 .seealso: [](ch_dmbase), `DM`, `DMDACreateCompatibleDMDA()`, `DMStagCreateCompatibleDMStag()`
8732 @*/
8733 PetscErrorCode DMGetCompatibility(DM dm1, DM dm2, PetscBool *compatible, PetscBool *set)
8734 {
8735   PetscMPIInt compareResult;
8736   DMType      type, type2;
8737   PetscBool   sameType;
8738 
8739   PetscFunctionBegin;
8740   PetscValidHeaderSpecific(dm1, DM_CLASSID, 1);
8741   PetscValidHeaderSpecific(dm2, DM_CLASSID, 2);
8742 
8743   /* Declare a DM compatible with itself */
8744   if (dm1 == dm2) {
8745     *set        = PETSC_TRUE;
8746     *compatible = PETSC_TRUE;
8747     PetscFunctionReturn(PETSC_SUCCESS);
8748   }
8749 
8750   /* Declare a DM incompatible with a DM that lives on an "unequal"
8751      communicator. Note that this does not preclude compatibility with
8752      DMs living on "congruent" or "similar" communicators, but this must be
8753      determined by the implementation-specific logic */
8754   PetscCallMPI(MPI_Comm_compare(PetscObjectComm((PetscObject)dm1), PetscObjectComm((PetscObject)dm2), &compareResult));
8755   if (compareResult == MPI_UNEQUAL) {
8756     *set        = PETSC_TRUE;
8757     *compatible = PETSC_FALSE;
8758     PetscFunctionReturn(PETSC_SUCCESS);
8759   }
8760 
8761   /* Pass to the implementation-specific routine, if one exists. */
8762   if (dm1->ops->getcompatibility) {
8763     PetscUseTypeMethod(dm1, getcompatibility, dm2, compatible, set);
8764     if (*set) PetscFunctionReturn(PETSC_SUCCESS);
8765   }
8766 
8767   /* If dm1 and dm2 are of different types, then attempt to check compatibility
8768      with an implementation of this function from dm2 */
8769   PetscCall(DMGetType(dm1, &type));
8770   PetscCall(DMGetType(dm2, &type2));
8771   PetscCall(PetscStrcmp(type, type2, &sameType));
8772   if (!sameType && dm2->ops->getcompatibility) {
8773     PetscUseTypeMethod(dm2, getcompatibility, dm1, compatible, set); /* Note argument order */
8774   } else {
8775     *set = PETSC_FALSE;
8776   }
8777   PetscFunctionReturn(PETSC_SUCCESS);
8778 }
8779 
8780 /*@C
8781   DMMonitorSet - Sets an additional monitor function that is to be used after a solve to monitor discretization performance.
8782 
8783   Logically Collective
8784 
8785   Input Parameters:
8786 + dm             - the `DM`
8787 . f              - the monitor function
8788 . mctx           - [optional] user-defined context for private data for the monitor routine (use `NULL` if no context is desired)
8789 - monitordestroy - [optional] routine that frees monitor context (may be `NULL`)
8790 
8791   Options Database Key:
8792 . -dm_monitor_cancel - cancels all monitors that have been hardwired into a code by calls to `DMMonitorSet()`, but
8793                             does not cancel those set via the options database.
8794 
8795   Level: intermediate
8796 
8797   Note:
8798   Several different monitoring routines may be set by calling
8799   `DMMonitorSet()` multiple times or with `DMMonitorSetFromOptions()`; all will be called in the
8800   order in which they were set.
8801 
8802   Fortran Notes:
8803   Only a single monitor function can be set for each `DM` object
8804 
8805   Developer Notes:
8806   This API has a generic name but seems specific to a very particular aspect of the use of `DM`
8807 
8808 .seealso: [](ch_dmbase), `DM`, `DMMonitorCancel()`, `DMMonitorSetFromOptions()`, `DMMonitor()`
8809 @*/
8810 PetscErrorCode DMMonitorSet(DM dm, PetscErrorCode (*f)(DM, void *), void *mctx, PetscErrorCode (*monitordestroy)(void **))
8811 {
8812   PetscInt m;
8813 
8814   PetscFunctionBegin;
8815   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
8816   for (m = 0; m < dm->numbermonitors; ++m) {
8817     PetscBool identical;
8818 
8819     PetscCall(PetscMonitorCompare((PetscErrorCode(*)(void))f, mctx, monitordestroy, (PetscErrorCode(*)(void))dm->monitor[m], dm->monitorcontext[m], dm->monitordestroy[m], &identical));
8820     if (identical) PetscFunctionReturn(PETSC_SUCCESS);
8821   }
8822   PetscCheck(dm->numbermonitors < MAXDMMONITORS, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Too many monitors set");
8823   dm->monitor[dm->numbermonitors]          = f;
8824   dm->monitordestroy[dm->numbermonitors]   = monitordestroy;
8825   dm->monitorcontext[dm->numbermonitors++] = (void *)mctx;
8826   PetscFunctionReturn(PETSC_SUCCESS);
8827 }
8828 
8829 /*@
8830   DMMonitorCancel - Clears all the monitor functions for a `DM` object.
8831 
8832   Logically Collective
8833 
8834   Input Parameter:
8835 . dm - the DM
8836 
8837   Options Database Key:
8838 . -dm_monitor_cancel - cancels all monitors that have been hardwired
8839   into a code by calls to `DMonitorSet()`, but does not cancel those
8840   set via the options database
8841 
8842   Level: intermediate
8843 
8844   Note:
8845   There is no way to clear one specific monitor from a `DM` object.
8846 
8847 .seealso: [](ch_dmbase), `DM`, `DMMonitorSet()`, `DMMonitorSetFromOptions()`, `DMMonitor()`
8848 @*/
8849 PetscErrorCode DMMonitorCancel(DM dm)
8850 {
8851   PetscInt m;
8852 
8853   PetscFunctionBegin;
8854   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
8855   for (m = 0; m < dm->numbermonitors; ++m) {
8856     if (dm->monitordestroy[m]) PetscCall((*dm->monitordestroy[m])(&dm->monitorcontext[m]));
8857   }
8858   dm->numbermonitors = 0;
8859   PetscFunctionReturn(PETSC_SUCCESS);
8860 }
8861 
8862 /*@C
8863   DMMonitorSetFromOptions - Sets a monitor function and viewer appropriate for the type indicated by the user
8864 
8865   Collective
8866 
8867   Input Parameters:
8868 + dm           - `DM` object you wish to monitor
8869 . name         - the monitor type one is seeking
8870 . help         - message indicating what monitoring is done
8871 . manual       - manual page for the monitor
8872 . monitor      - the monitor function
8873 - monitorsetup - a function that is called once ONLY if the user selected this monitor that may set additional features of the `DM` or `PetscViewer` objects
8874 
8875   Output Parameter:
8876 . flg - Flag set if the monitor was created
8877 
8878   Level: developer
8879 
8880 .seealso: [](ch_dmbase), `DM`, `PetscOptionsGetViewer()`, `PetscOptionsGetReal()`, `PetscOptionsHasName()`, `PetscOptionsGetString()`,
8881           `PetscOptionsGetIntArray()`, `PetscOptionsGetRealArray()`, `PetscOptionsBool()`
8882           `PetscOptionsInt()`, `PetscOptionsString()`, `PetscOptionsReal()`,
8883           `PetscOptionsName()`, `PetscOptionsBegin()`, `PetscOptionsEnd()`, `PetscOptionsHeadBegin()`,
8884           `PetscOptionsStringArray()`, `PetscOptionsRealArray()`, `PetscOptionsScalar()`,
8885           `PetscOptionsBoolGroupBegin()`, `PetscOptionsBoolGroup()`, `PetscOptionsBoolGroupEnd()`,
8886           `PetscOptionsFList()`, `PetscOptionsEList()`, `DMMonitor()`, `DMMonitorSet()`
8887 @*/
8888 PetscErrorCode DMMonitorSetFromOptions(DM dm, const char name[], const char help[], const char manual[], PetscErrorCode (*monitor)(DM, void *), PetscErrorCode (*monitorsetup)(DM, PetscViewerAndFormat *), PetscBool *flg)
8889 {
8890   PetscViewer       viewer;
8891   PetscViewerFormat format;
8892 
8893   PetscFunctionBegin;
8894   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
8895   PetscCall(PetscOptionsGetViewer(PetscObjectComm((PetscObject)dm), ((PetscObject)dm)->options, ((PetscObject)dm)->prefix, name, &viewer, &format, flg));
8896   if (*flg) {
8897     PetscViewerAndFormat *vf;
8898 
8899     PetscCall(PetscViewerAndFormatCreate(viewer, format, &vf));
8900     PetscCall(PetscOptionsRestoreViewer(&viewer));
8901     if (monitorsetup) PetscCall((*monitorsetup)(dm, vf));
8902     PetscCall(DMMonitorSet(dm, (PetscErrorCode(*)(DM, void *))monitor, vf, (PetscErrorCode(*)(void **))PetscViewerAndFormatDestroy));
8903   }
8904   PetscFunctionReturn(PETSC_SUCCESS);
8905 }
8906 
8907 /*@
8908   DMMonitor - runs the user provided monitor routines, if they exist
8909 
8910   Collective
8911 
8912   Input Parameter:
8913 . dm - The `DM`
8914 
8915   Level: developer
8916 
8917   Developer Notes:
8918   Note should indicate when during the life of the `DM` the monitor is run. It appears to be
8919   related to the discretization process seems rather specialized since some `DM` have no
8920   concept of discretization.
8921 
8922 .seealso: [](ch_dmbase), `DM`, `DMMonitorSet()`, `DMMonitorSetFromOptions()`
8923 @*/
8924 PetscErrorCode DMMonitor(DM dm)
8925 {
8926   PetscInt m;
8927 
8928   PetscFunctionBegin;
8929   if (!dm) PetscFunctionReturn(PETSC_SUCCESS);
8930   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
8931   for (m = 0; m < dm->numbermonitors; ++m) PetscCall((*dm->monitor[m])(dm, dm->monitorcontext[m]));
8932   PetscFunctionReturn(PETSC_SUCCESS);
8933 }
8934 
8935 /*@
8936   DMComputeError - Computes the error assuming the user has provided the exact solution functions
8937 
8938   Collective
8939 
8940   Input Parameters:
8941 + dm  - The `DM`
8942 - sol - The solution vector
8943 
8944   Input/Output Parameter:
8945 . errors - An array of length Nf, the number of fields, or `NULL` for no output; on output
8946            contains the error in each field
8947 
8948   Output Parameter:
8949 . errorVec - A vector to hold the cellwise error (may be `NULL`)
8950 
8951   Level: developer
8952 
8953   Note:
8954   The exact solutions come from the `PetscDS` object, and the time comes from `DMGetOutputSequenceNumber()`.
8955 
8956 .seealso: [](ch_dmbase), `DM`, `DMMonitorSet()`, `DMGetRegionNumDS()`, `PetscDSGetExactSolution()`, `DMGetOutputSequenceNumber()`
8957 @*/
8958 PetscErrorCode DMComputeError(DM dm, Vec sol, PetscReal errors[], Vec *errorVec)
8959 {
8960   PetscErrorCode (**exactSol)(PetscInt, PetscReal, const PetscReal[], PetscInt, PetscScalar[], void *);
8961   void    **ctxs;
8962   PetscReal time;
8963   PetscInt  Nf, f, Nds, s;
8964 
8965   PetscFunctionBegin;
8966   PetscCall(DMGetNumFields(dm, &Nf));
8967   PetscCall(PetscCalloc2(Nf, &exactSol, Nf, &ctxs));
8968   PetscCall(DMGetNumDS(dm, &Nds));
8969   for (s = 0; s < Nds; ++s) {
8970     PetscDS         ds;
8971     DMLabel         label;
8972     IS              fieldIS;
8973     const PetscInt *fields;
8974     PetscInt        dsNf;
8975 
8976     PetscCall(DMGetRegionNumDS(dm, s, &label, &fieldIS, &ds, NULL));
8977     PetscCall(PetscDSGetNumFields(ds, &dsNf));
8978     if (fieldIS) PetscCall(ISGetIndices(fieldIS, &fields));
8979     for (f = 0; f < dsNf; ++f) {
8980       const PetscInt field = fields[f];
8981       PetscCall(PetscDSGetExactSolution(ds, field, &exactSol[field], &ctxs[field]));
8982     }
8983     if (fieldIS) PetscCall(ISRestoreIndices(fieldIS, &fields));
8984   }
8985   for (f = 0; f < Nf; ++f) PetscCheck(exactSol[f], PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "DS must contain exact solution functions in order to calculate error, missing for field %" PetscInt_FMT, f);
8986   PetscCall(DMGetOutputSequenceNumber(dm, NULL, &time));
8987   if (errors) PetscCall(DMComputeL2FieldDiff(dm, time, exactSol, ctxs, sol, errors));
8988   if (errorVec) {
8989     DM             edm;
8990     DMPolytopeType ct;
8991     PetscBool      simplex;
8992     PetscInt       dim, cStart, Nf;
8993 
8994     PetscCall(DMClone(dm, &edm));
8995     PetscCall(DMGetDimension(edm, &dim));
8996     PetscCall(DMPlexGetHeightStratum(dm, 0, &cStart, NULL));
8997     PetscCall(DMPlexGetCellType(dm, cStart, &ct));
8998     simplex = DMPolytopeTypeGetNumVertices(ct) == DMPolytopeTypeGetDim(ct) + 1 ? PETSC_TRUE : PETSC_FALSE;
8999     PetscCall(DMGetNumFields(dm, &Nf));
9000     for (f = 0; f < Nf; ++f) {
9001       PetscFE         fe, efe;
9002       PetscQuadrature q;
9003       const char     *name;
9004 
9005       PetscCall(DMGetField(dm, f, NULL, (PetscObject *)&fe));
9006       PetscCall(PetscFECreateLagrange(PETSC_COMM_SELF, dim, Nf, simplex, 0, PETSC_DETERMINE, &efe));
9007       PetscCall(PetscObjectGetName((PetscObject)fe, &name));
9008       PetscCall(PetscObjectSetName((PetscObject)efe, name));
9009       PetscCall(PetscFEGetQuadrature(fe, &q));
9010       PetscCall(PetscFESetQuadrature(efe, q));
9011       PetscCall(DMSetField(edm, f, NULL, (PetscObject)efe));
9012       PetscCall(PetscFEDestroy(&efe));
9013     }
9014     PetscCall(DMCreateDS(edm));
9015 
9016     PetscCall(DMCreateGlobalVector(edm, errorVec));
9017     PetscCall(PetscObjectSetName((PetscObject)*errorVec, "Error"));
9018     PetscCall(DMPlexComputeL2DiffVec(dm, time, exactSol, ctxs, sol, *errorVec));
9019     PetscCall(DMDestroy(&edm));
9020   }
9021   PetscCall(PetscFree2(exactSol, ctxs));
9022   PetscFunctionReturn(PETSC_SUCCESS);
9023 }
9024 
9025 /*@
9026   DMGetNumAuxiliaryVec - Get the number of auxiliary vectors associated with this `DM`
9027 
9028   Not Collective
9029 
9030   Input Parameter:
9031 . dm - The `DM`
9032 
9033   Output Parameter:
9034 . numAux - The number of auxiliary data vectors
9035 
9036   Level: advanced
9037 
9038 .seealso: [](ch_dmbase), `DM`, `DMClearAuxiliaryVec()`, `DMSetAuxiliaryVec()`, `DMGetAuxiliaryLabels()`, `DMGetAuxiliaryVec()`
9039 @*/
9040 PetscErrorCode DMGetNumAuxiliaryVec(DM dm, PetscInt *numAux)
9041 {
9042   PetscFunctionBegin;
9043   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
9044   PetscCall(PetscHMapAuxGetSize(dm->auxData, numAux));
9045   PetscFunctionReturn(PETSC_SUCCESS);
9046 }
9047 
9048 /*@
9049   DMGetAuxiliaryVec - Get the auxiliary vector for region specified by the given label and value, and equation part
9050 
9051   Not Collective
9052 
9053   Input Parameters:
9054 + dm    - The `DM`
9055 . label - The `DMLabel`
9056 . value - The label value indicating the region
9057 - part  - The equation part, or 0 if unused
9058 
9059   Output Parameter:
9060 . aux - The `Vec` holding auxiliary field data
9061 
9062   Level: advanced
9063 
9064   Note:
9065   If no auxiliary vector is found for this (label, value), (NULL, 0, 0) is checked as well.
9066 
9067 .seealso: [](ch_dmbase), `DM`, `DMClearAuxiliaryVec()`, `DMSetAuxiliaryVec()`, `DMGetNumAuxiliaryVec()`, `DMGetAuxiliaryLabels()`
9068 @*/
9069 PetscErrorCode DMGetAuxiliaryVec(DM dm, DMLabel label, PetscInt value, PetscInt part, Vec *aux)
9070 {
9071   PetscHashAuxKey key, wild = {NULL, 0, 0};
9072   PetscBool       has;
9073 
9074   PetscFunctionBegin;
9075   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
9076   if (label) PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 2);
9077   key.label = label;
9078   key.value = value;
9079   key.part  = part;
9080   PetscCall(PetscHMapAuxHas(dm->auxData, key, &has));
9081   if (has) PetscCall(PetscHMapAuxGet(dm->auxData, key, aux));
9082   else PetscCall(PetscHMapAuxGet(dm->auxData, wild, aux));
9083   PetscFunctionReturn(PETSC_SUCCESS);
9084 }
9085 
9086 /*@
9087   DMSetAuxiliaryVec - Set an auxiliary vector for region specified by the given label and value, and equation part
9088 
9089   Not Collective because auxiliary vectors are not parallel
9090 
9091   Input Parameters:
9092 + dm    - The `DM`
9093 . label - The `DMLabel`
9094 . value - The label value indicating the region
9095 . part  - The equation part, or 0 if unused
9096 - aux   - The `Vec` holding auxiliary field data
9097 
9098   Level: advanced
9099 
9100 .seealso: [](ch_dmbase), `DM`, `DMClearAuxiliaryVec()`, `DMGetAuxiliaryVec()`, `DMGetAuxiliaryLabels()`, `DMCopyAuxiliaryVec()`
9101 @*/
9102 PetscErrorCode DMSetAuxiliaryVec(DM dm, DMLabel label, PetscInt value, PetscInt part, Vec aux)
9103 {
9104   Vec             old;
9105   PetscHashAuxKey key;
9106 
9107   PetscFunctionBegin;
9108   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
9109   if (label) PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 2);
9110   key.label = label;
9111   key.value = value;
9112   key.part  = part;
9113   PetscCall(PetscHMapAuxGet(dm->auxData, key, &old));
9114   PetscCall(PetscObjectReference((PetscObject)aux));
9115   if (!aux) PetscCall(PetscHMapAuxDel(dm->auxData, key));
9116   else PetscCall(PetscHMapAuxSet(dm->auxData, key, aux));
9117   PetscCall(VecDestroy(&old));
9118   PetscFunctionReturn(PETSC_SUCCESS);
9119 }
9120 
9121 /*@C
9122   DMGetAuxiliaryLabels - Get the labels, values, and parts for all auxiliary vectors in this `DM`
9123 
9124   Not Collective
9125 
9126   Input Parameter:
9127 . dm - The `DM`
9128 
9129   Output Parameters:
9130 + labels - The `DMLabel`s for each `Vec`
9131 . values - The label values for each `Vec`
9132 - parts  - The equation parts for each `Vec`
9133 
9134   Level: advanced
9135 
9136   Note:
9137   The arrays passed in must be at least as large as `DMGetNumAuxiliaryVec()`.
9138 
9139 .seealso: [](ch_dmbase), `DM`, `DMClearAuxiliaryVec()`, `DMGetNumAuxiliaryVec()`, `DMGetAuxiliaryVec()`, `DMSetAuxiliaryVec()`, `DMCopyAuxiliaryVec()`
9140 @*/
9141 PetscErrorCode DMGetAuxiliaryLabels(DM dm, DMLabel labels[], PetscInt values[], PetscInt parts[])
9142 {
9143   PetscHashAuxKey *keys;
9144   PetscInt         n, i, off = 0;
9145 
9146   PetscFunctionBegin;
9147   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
9148   PetscAssertPointer(labels, 2);
9149   PetscAssertPointer(values, 3);
9150   PetscAssertPointer(parts, 4);
9151   PetscCall(DMGetNumAuxiliaryVec(dm, &n));
9152   PetscCall(PetscMalloc1(n, &keys));
9153   PetscCall(PetscHMapAuxGetKeys(dm->auxData, &off, keys));
9154   for (i = 0; i < n; ++i) {
9155     labels[i] = keys[i].label;
9156     values[i] = keys[i].value;
9157     parts[i]  = keys[i].part;
9158   }
9159   PetscCall(PetscFree(keys));
9160   PetscFunctionReturn(PETSC_SUCCESS);
9161 }
9162 
9163 /*@
9164   DMCopyAuxiliaryVec - Copy the auxiliary vector data on a `DM` to a new `DM`
9165 
9166   Not Collective
9167 
9168   Input Parameter:
9169 . dm - The `DM`
9170 
9171   Output Parameter:
9172 . dmNew - The new `DM`, now with the same auxiliary data
9173 
9174   Level: advanced
9175 
9176   Note:
9177   This is a shallow copy of the auxiliary vectors
9178 
9179 .seealso: [](ch_dmbase), `DM`, `DMClearAuxiliaryVec()`, `DMGetNumAuxiliaryVec()`, `DMGetAuxiliaryVec()`, `DMSetAuxiliaryVec()`
9180 @*/
9181 PetscErrorCode DMCopyAuxiliaryVec(DM dm, DM dmNew)
9182 {
9183   PetscFunctionBegin;
9184   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
9185   PetscValidHeaderSpecific(dmNew, DM_CLASSID, 2);
9186   if (dm == dmNew) PetscFunctionReturn(PETSC_SUCCESS);
9187   PetscCall(DMClearAuxiliaryVec(dmNew));
9188 
9189   PetscCall(PetscHMapAuxDestroy(&dmNew->auxData));
9190   PetscCall(PetscHMapAuxDuplicate(dm->auxData, &dmNew->auxData));
9191   {
9192     Vec     *auxData;
9193     PetscInt n, i, off = 0;
9194 
9195     PetscCall(PetscHMapAuxGetSize(dmNew->auxData, &n));
9196     PetscCall(PetscMalloc1(n, &auxData));
9197     PetscCall(PetscHMapAuxGetVals(dmNew->auxData, &off, auxData));
9198     for (i = 0; i < n; ++i) PetscCall(PetscObjectReference((PetscObject)auxData[i]));
9199     PetscCall(PetscFree(auxData));
9200   }
9201   PetscFunctionReturn(PETSC_SUCCESS);
9202 }
9203 
9204 /*@
9205   DMClearAuxiliaryVec - Destroys the auxiliary vector information and creates a new empty one
9206 
9207   Not Collective
9208 
9209   Input Parameter:
9210 . dm - The `DM`
9211 
9212   Level: advanced
9213 
9214 .seealso: [](ch_dmbase), `DM`, `DMCopyAuxiliaryVec()`, `DMGetNumAuxiliaryVec()`, `DMGetAuxiliaryVec()`, `DMSetAuxiliaryVec()`
9215 @*/
9216 PetscErrorCode DMClearAuxiliaryVec(DM dm)
9217 {
9218   Vec     *auxData;
9219   PetscInt n, i, off = 0;
9220 
9221   PetscFunctionBegin;
9222   PetscCall(PetscHMapAuxGetSize(dm->auxData, &n));
9223   PetscCall(PetscMalloc1(n, &auxData));
9224   PetscCall(PetscHMapAuxGetVals(dm->auxData, &off, auxData));
9225   for (i = 0; i < n; ++i) PetscCall(VecDestroy(&auxData[i]));
9226   PetscCall(PetscFree(auxData));
9227   PetscCall(PetscHMapAuxDestroy(&dm->auxData));
9228   PetscCall(PetscHMapAuxCreate(&dm->auxData));
9229   PetscFunctionReturn(PETSC_SUCCESS);
9230 }
9231 
9232 /*@C
9233   DMPolytopeMatchOrientation - Determine an orientation (transformation) that takes the source face arrangement to the target face arrangement
9234 
9235   Not Collective
9236 
9237   Input Parameters:
9238 + ct         - The `DMPolytopeType`
9239 . sourceCone - The source arrangement of faces
9240 - targetCone - The target arrangement of faces
9241 
9242   Output Parameters:
9243 + ornt  - The orientation (transformation) which will take the source arrangement to the target arrangement
9244 - found - Flag indicating that a suitable orientation was found
9245 
9246   Level: advanced
9247 
9248   Note:
9249   An arrangement is a face order combined with an orientation for each face
9250 
9251   Each orientation (transformation) is labeled with an integer from negative `DMPolytopeTypeGetNumArrangements(ct)`/2 to `DMPolytopeTypeGetNumArrangements(ct)`/2
9252   that labels each arrangement (face ordering plus orientation for each face).
9253 
9254   See `DMPolytopeMatchVertexOrientation()` to find a new vertex orientation that takes the source vertex arrangement to the target vertex arrangement
9255 
9256 .seealso: [](ch_dmbase), `DM`, `DMPolytopeGetOrientation()`, `DMPolytopeMatchVertexOrientation()`, `DMPolytopeGetVertexOrientation()`
9257 @*/
9258 PetscErrorCode DMPolytopeMatchOrientation(DMPolytopeType ct, const PetscInt sourceCone[], const PetscInt targetCone[], PetscInt *ornt, PetscBool *found)
9259 {
9260   const PetscInt cS = DMPolytopeTypeGetConeSize(ct);
9261   const PetscInt nO = DMPolytopeTypeGetNumArrangements(ct) / 2;
9262   PetscInt       o, c;
9263 
9264   PetscFunctionBegin;
9265   if (!nO) {
9266     *ornt  = 0;
9267     *found = PETSC_TRUE;
9268     PetscFunctionReturn(PETSC_SUCCESS);
9269   }
9270   for (o = -nO; o < nO; ++o) {
9271     const PetscInt *arr = DMPolytopeTypeGetArrangement(ct, o);
9272 
9273     for (c = 0; c < cS; ++c)
9274       if (sourceCone[arr[c * 2]] != targetCone[c]) break;
9275     if (c == cS) {
9276       *ornt = o;
9277       break;
9278     }
9279   }
9280   *found = o == nO ? PETSC_FALSE : PETSC_TRUE;
9281   PetscFunctionReturn(PETSC_SUCCESS);
9282 }
9283 
9284 /*@C
9285   DMPolytopeGetOrientation - Determine an orientation (transformation) that takes the source face arrangement to the target face arrangement
9286 
9287   Not Collective
9288 
9289   Input Parameters:
9290 + ct         - The `DMPolytopeType`
9291 . sourceCone - The source arrangement of faces
9292 - targetCone - The target arrangement of faces
9293 
9294   Output Parameter:
9295 . ornt - The orientation (transformation) which will take the source arrangement to the target arrangement
9296 
9297   Level: advanced
9298 
9299   Note:
9300   This function is the same as `DMPolytopeMatchOrientation()` except it will generate an error if no suitable orientation can be found.
9301 
9302   Developer Notes:
9303   It is unclear why this function needs to exist since one can simply call `DMPolytopeMatchOrientation()` and error if none is found
9304 
9305 .seealso: [](ch_dmbase), `DM`, `DMPolytopeType`, `DMPolytopeMatchOrientation()`, `DMPolytopeGetVertexOrientation()`, `DMPolytopeMatchVertexOrientation()`
9306 @*/
9307 PetscErrorCode DMPolytopeGetOrientation(DMPolytopeType ct, const PetscInt sourceCone[], const PetscInt targetCone[], PetscInt *ornt)
9308 {
9309   PetscBool found;
9310 
9311   PetscFunctionBegin;
9312   PetscCall(DMPolytopeMatchOrientation(ct, sourceCone, targetCone, ornt, &found));
9313   PetscCheck(found, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Could not find orientation for %s", DMPolytopeTypes[ct]);
9314   PetscFunctionReturn(PETSC_SUCCESS);
9315 }
9316 
9317 /*@C
9318   DMPolytopeMatchVertexOrientation - Determine an orientation (transformation) that takes the source vertex arrangement to the target vertex arrangement
9319 
9320   Not Collective
9321 
9322   Input Parameters:
9323 + ct         - The `DMPolytopeType`
9324 . sourceVert - The source arrangement of vertices
9325 - targetVert - The target arrangement of vertices
9326 
9327   Output Parameters:
9328 + ornt  - The orientation (transformation) which will take the source arrangement to the target arrangement
9329 - found - Flag indicating that a suitable orientation was found
9330 
9331   Level: advanced
9332 
9333   Note:
9334   An arrangement is a vertex order
9335 
9336   Each orientation (transformation) is labeled with an integer from negative `DMPolytopeTypeGetNumArrangements(ct)`/2 to `DMPolytopeTypeGetNumArrangements(ct)`/2
9337   that labels each arrangement (vertex ordering).
9338 
9339   See `DMPolytopeMatchOrientation()` to find a new face orientation that takes the source face arrangement to the target face arrangement
9340 
9341 .seealso: [](ch_dmbase), `DM`, `DMPolytopeType`, `DMPolytopeGetOrientation()`, `DMPolytopeMatchOrientation()`, `DMPolytopeTypeGetNumVertices()`, `DMPolytopeTypeGetVertexArrangement()`
9342 @*/
9343 PetscErrorCode DMPolytopeMatchVertexOrientation(DMPolytopeType ct, const PetscInt sourceVert[], const PetscInt targetVert[], PetscInt *ornt, PetscBool *found)
9344 {
9345   const PetscInt cS = DMPolytopeTypeGetNumVertices(ct);
9346   const PetscInt nO = DMPolytopeTypeGetNumArrangements(ct) / 2;
9347   PetscInt       o, c;
9348 
9349   PetscFunctionBegin;
9350   if (!nO) {
9351     *ornt  = 0;
9352     *found = PETSC_TRUE;
9353     PetscFunctionReturn(PETSC_SUCCESS);
9354   }
9355   for (o = -nO; o < nO; ++o) {
9356     const PetscInt *arr = DMPolytopeTypeGetVertexArrangement(ct, o);
9357 
9358     for (c = 0; c < cS; ++c)
9359       if (sourceVert[arr[c]] != targetVert[c]) break;
9360     if (c == cS) {
9361       *ornt = o;
9362       break;
9363     }
9364   }
9365   *found = o == nO ? PETSC_FALSE : PETSC_TRUE;
9366   PetscFunctionReturn(PETSC_SUCCESS);
9367 }
9368 
9369 /*@C
9370   DMPolytopeGetVertexOrientation - Determine an orientation (transformation) that takes the source vertex arrangement to the target vertex arrangement
9371 
9372   Not Collective
9373 
9374   Input Parameters:
9375 + ct         - The `DMPolytopeType`
9376 . sourceCone - The source arrangement of vertices
9377 - targetCone - The target arrangement of vertices
9378 
9379   Output Parameter:
9380 . ornt - The orientation (transformation) which will take the source arrangement to the target arrangement
9381 
9382   Level: advanced
9383 
9384   Note:
9385   This function is the same as `DMPolytopeMatchVertexOrientation()` except it errors if not orientation is possible.
9386 
9387   Developer Notes:
9388   It is unclear why this function needs to exist since one can simply call `DMPolytopeMatchVertexOrientation()` and error if none is found
9389 
9390 .seealso: [](ch_dmbase), `DM`, `DMPolytopeType`, `DMPolytopeMatchVertexOrientation()`, `DMPolytopeGetOrientation()`
9391 @*/
9392 PetscErrorCode DMPolytopeGetVertexOrientation(DMPolytopeType ct, const PetscInt sourceCone[], const PetscInt targetCone[], PetscInt *ornt)
9393 {
9394   PetscBool found;
9395 
9396   PetscFunctionBegin;
9397   PetscCall(DMPolytopeMatchVertexOrientation(ct, sourceCone, targetCone, ornt, &found));
9398   PetscCheck(found, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Could not find orientation for %s", DMPolytopeTypes[ct]);
9399   PetscFunctionReturn(PETSC_SUCCESS);
9400 }
9401 
9402 /*@C
9403   DMPolytopeInCellTest - Check whether a point lies inside the reference cell of given type
9404 
9405   Not Collective
9406 
9407   Input Parameters:
9408 + ct    - The `DMPolytopeType`
9409 - point - Coordinates of the point
9410 
9411   Output Parameter:
9412 . inside - Flag indicating whether the point is inside the reference cell of given type
9413 
9414   Level: advanced
9415 
9416 .seealso: [](ch_dmbase), `DM`, `DMPolytopeType`, `DMLocatePoints()`
9417 @*/
9418 PetscErrorCode DMPolytopeInCellTest(DMPolytopeType ct, const PetscReal point[], PetscBool *inside)
9419 {
9420   PetscReal sum = 0.0;
9421   PetscInt  d;
9422 
9423   PetscFunctionBegin;
9424   *inside = PETSC_TRUE;
9425   switch (ct) {
9426   case DM_POLYTOPE_TRIANGLE:
9427   case DM_POLYTOPE_TETRAHEDRON:
9428     for (d = 0; d < DMPolytopeTypeGetDim(ct); ++d) {
9429       if (point[d] < -1.0) {
9430         *inside = PETSC_FALSE;
9431         break;
9432       }
9433       sum += point[d];
9434     }
9435     if (sum > PETSC_SMALL) {
9436       *inside = PETSC_FALSE;
9437       break;
9438     }
9439     break;
9440   case DM_POLYTOPE_QUADRILATERAL:
9441   case DM_POLYTOPE_HEXAHEDRON:
9442     for (d = 0; d < DMPolytopeTypeGetDim(ct); ++d)
9443       if (PetscAbsReal(point[d]) > 1. + PETSC_SMALL) {
9444         *inside = PETSC_FALSE;
9445         break;
9446       }
9447     break;
9448   default:
9449     SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Unsupported polytope type %s", DMPolytopeTypes[ct]);
9450   }
9451   PetscFunctionReturn(PETSC_SUCCESS);
9452 }
9453 
9454 /*@
9455   DMReorderSectionSetDefault - Set flag indicating whether the local section should be reordered by default
9456 
9457   Logically collective
9458 
9459   Input Parameters:
9460 + dm      - The DM
9461 - reorder - Flag for reordering
9462 
9463   Level: intermediate
9464 
9465 .seealso: `DMReorderSectionGetDefault()`
9466 @*/
9467 PetscErrorCode DMReorderSectionSetDefault(DM dm, DMReorderDefaultFlag reorder)
9468 {
9469   PetscFunctionBegin;
9470   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
9471   PetscTryMethod(dm, "DMReorderSectionSetDefault_C", (DM, DMReorderDefaultFlag), (dm, reorder));
9472   PetscFunctionReturn(PETSC_SUCCESS);
9473 }
9474 
9475 /*@
9476   DMReorderSectionGetDefault - Get flag indicating whether the local section should be reordered by default
9477 
9478   Not collective
9479 
9480   Input Parameter:
9481 . dm - The DM
9482 
9483   Output Parameter:
9484 . reorder - Flag for reordering
9485 
9486   Level: intermediate
9487 
9488 .seealso: `DMReorderSetDefault()`
9489 @*/
9490 PetscErrorCode DMReorderSectionGetDefault(DM dm, DMReorderDefaultFlag *reorder)
9491 {
9492   PetscFunctionBegin;
9493   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
9494   PetscAssertPointer(reorder, 2);
9495   *reorder = DM_REORDER_DEFAULT_NOTSET;
9496   PetscTryMethod(dm, "DMReorderSectionGetDefault_C", (DM, DMReorderDefaultFlag *), (dm, reorder));
9497   PetscFunctionReturn(PETSC_SUCCESS);
9498 }
9499 
9500 /*@C
9501   DMReorderSectionSetType - Set the type of local section reordering
9502 
9503   Logically collective
9504 
9505   Input Parameters:
9506 + dm      - The DM
9507 - reorder - The reordering method
9508 
9509   Level: intermediate
9510 
9511 .seealso: `DMReorderSectionGetType()`, `DMReorderSectionSetDefault()`
9512 @*/
9513 PetscErrorCode DMReorderSectionSetType(DM dm, MatOrderingType reorder)
9514 {
9515   PetscFunctionBegin;
9516   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
9517   PetscTryMethod(dm, "DMReorderSectionSetType_C", (DM, MatOrderingType), (dm, reorder));
9518   PetscFunctionReturn(PETSC_SUCCESS);
9519 }
9520 
9521 /*@C
9522   DMReorderSectionGetType - Get the reordering type for the local section
9523 
9524   Not collective
9525 
9526   Input Parameter:
9527 . dm - The DM
9528 
9529   Output Parameter:
9530 . reorder - The reordering method
9531 
9532   Level: intermediate
9533 
9534 .seealso: `DMReorderSetDefault()`, `DMReorderSectionGetDefault()`
9535 @*/
9536 PetscErrorCode DMReorderSectionGetType(DM dm, MatOrderingType *reorder)
9537 {
9538   PetscFunctionBegin;
9539   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
9540   PetscAssertPointer(reorder, 2);
9541   *reorder = NULL;
9542   PetscTryMethod(dm, "DMReorderSectionGetType_C", (DM, MatOrderingType *), (dm, reorder));
9543   PetscFunctionReturn(PETSC_SUCCESS);
9544 }
9545