1af0996ceSBarry Smith #include <petsc/private/dmimpl.h> /*I "petscdm.h" I*/ 22764a2aaSMatthew G. Knepley #include <petscds.h> 311689aebSJed Brown 45b8243e1SJed Brown // Greatest common divisor of two nonnegative integers 5d71ae5a4SJacob Faibussowitsch PetscInt PetscGCD(PetscInt a, PetscInt b) 6d71ae5a4SJacob Faibussowitsch { 75b8243e1SJed Brown while (b != 0) { 85b8243e1SJed Brown PetscInt tmp = b; 95b8243e1SJed Brown b = a % b; 105b8243e1SJed Brown a = tmp; 115b8243e1SJed Brown } 125b8243e1SJed Brown return a; 135b8243e1SJed Brown } 145b8243e1SJed Brown 15d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateGlobalVector_Section_Private(DM dm, Vec *vec) 16d71ae5a4SJacob Faibussowitsch { 1711689aebSJed Brown PetscSection gSection; 18cc30b04dSMatthew G Knepley PetscInt localSize, bs, blockSize = -1, pStart, pEnd, p; 195d1c0279SHong Zhang PetscInt in[2], out[2]; 2011689aebSJed Brown 2111689aebSJed Brown PetscFunctionBegin; 229566063dSJacob Faibussowitsch PetscCall(DMGetGlobalSection(dm, &gSection)); 239566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(gSection, &pStart, &pEnd)); 2411689aebSJed Brown for (p = pStart; p < pEnd; ++p) { 2511689aebSJed Brown PetscInt dof, cdof; 2611689aebSJed Brown 279566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(gSection, p, &dof)); 289566063dSJacob Faibussowitsch PetscCall(PetscSectionGetConstraintDof(gSection, p, &cdof)); 290680ce0aSHong Zhang 305b8243e1SJed Brown if (dof - cdof > 0) { 315b8243e1SJed Brown if (blockSize < 0) { 320680ce0aSHong Zhang /* set blockSize */ 330680ce0aSHong Zhang blockSize = dof - cdof; 345b8243e1SJed Brown } else { 355b8243e1SJed Brown blockSize = PetscGCD(dof - cdof, blockSize); 3611689aebSJed Brown } 3711689aebSJed Brown } 380680ce0aSHong Zhang } 395d1c0279SHong Zhang 400b697e01SMatthew G. Knepley // You cannot negate PETSC_MIN_INT 410b697e01SMatthew G. Knepley in[0] = blockSize < 0 ? -PETSC_MAX_INT : -blockSize; 425d1c0279SHong Zhang in[1] = blockSize; 431c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(in, out, 2, MPIU_INT, MPI_MAX, PetscObjectComm((PetscObject)dm))); 445d1c0279SHong Zhang /* -out[0] = min(blockSize), out[1] = max(blockSize) */ 455d1c0279SHong Zhang if (-out[0] == out[1]) { 465d1c0279SHong Zhang bs = out[1]; 475d1c0279SHong Zhang } else bs = 1; 485d1c0279SHong Zhang 495d1c0279SHong Zhang if (bs < 0) { /* Everyone was empty */ 505d1c0279SHong Zhang blockSize = 1; 515d1c0279SHong Zhang bs = 1; 525d1c0279SHong Zhang } 535d1c0279SHong Zhang 549566063dSJacob Faibussowitsch PetscCall(PetscSectionGetConstrainedStorageSize(gSection, &localSize)); 557a8be351SBarry Smith PetscCheck(localSize % blockSize == 0, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Mismatch between blocksize %" PetscInt_FMT " and local storage size %" PetscInt_FMT, blockSize, localSize); 569566063dSJacob Faibussowitsch PetscCall(VecCreate(PetscObjectComm((PetscObject)dm), vec)); 579566063dSJacob Faibussowitsch PetscCall(VecSetSizes(*vec, localSize, PETSC_DETERMINE)); 589566063dSJacob Faibussowitsch PetscCall(VecSetBlockSize(*vec, bs)); 599566063dSJacob Faibussowitsch PetscCall(VecSetType(*vec, dm->vectype)); 609566063dSJacob Faibussowitsch PetscCall(VecSetDM(*vec, dm)); 619566063dSJacob Faibussowitsch /* PetscCall(VecSetLocalToGlobalMapping(*vec, dm->ltogmap)); */ 623ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6311689aebSJed Brown } 6411689aebSJed Brown 65d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateLocalVector_Section_Private(DM dm, Vec *vec) 66d71ae5a4SJacob Faibussowitsch { 67fad22124SMatthew G Knepley PetscSection section; 6811689aebSJed Brown PetscInt localSize, blockSize = -1, pStart, pEnd, p; 6911689aebSJed Brown 7011689aebSJed Brown PetscFunctionBegin; 719566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, §ion)); 729566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(section, &pStart, &pEnd)); 7311689aebSJed Brown for (p = pStart; p < pEnd; ++p) { 7411689aebSJed Brown PetscInt dof; 7511689aebSJed Brown 769566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(section, p, &dof)); 7711689aebSJed Brown if ((blockSize < 0) && (dof > 0)) blockSize = dof; 785b8243e1SJed Brown if (dof > 0) blockSize = PetscGCD(dof, blockSize); 7911689aebSJed Brown } 809566063dSJacob Faibussowitsch PetscCall(PetscSectionGetStorageSize(section, &localSize)); 819566063dSJacob Faibussowitsch PetscCall(VecCreate(PETSC_COMM_SELF, vec)); 829566063dSJacob Faibussowitsch PetscCall(VecSetSizes(*vec, localSize, localSize)); 839566063dSJacob Faibussowitsch PetscCall(VecSetBlockSize(*vec, blockSize)); 849566063dSJacob Faibussowitsch PetscCall(VecSetType(*vec, dm->vectype)); 859566063dSJacob Faibussowitsch PetscCall(VecSetDM(*vec, dm)); 863ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 8711689aebSJed Brown } 884d9407bcSMatthew G. Knepley 89dd072f5fSMatthew G. Knepley static PetscErrorCode PetscSectionSelectFields_Private(PetscSection s, PetscSection gs, PetscInt numFields, const PetscInt fields[], const PetscInt numComps[], const PetscInt comps[], IS *is) 90d71ae5a4SJacob Faibussowitsch { 914d9407bcSMatthew G. Knepley PetscInt *subIndices; 92dd072f5fSMatthew G. Knepley PetscInt bs = 0, bsLocal[2], bsMinMax[2]; 93dd072f5fSMatthew G. Knepley PetscInt pStart, pEnd, Nc, subSize = 0, subOff = 0; 944d9407bcSMatthew G. Knepley 954d9407bcSMatthew G. Knepley PetscFunctionBegin; 969e47a1b0SMatthew G. Knepley PetscCall(PetscSectionGetChart(gs, &pStart, &pEnd)); 97dd072f5fSMatthew G. Knepley if (numComps) { 98dd072f5fSMatthew G. Knepley for (PetscInt f = 0, off = 0; f < numFields; ++f) { 993a544194SStefano Zampini PetscInt Nc; 1003a544194SStefano Zampini 101dd072f5fSMatthew G. Knepley if (numComps[f] < 0) continue; 102dd072f5fSMatthew G. Knepley PetscCall(PetscSectionGetFieldComponents(s, f, &Nc)); 103dd072f5fSMatthew G. Knepley PetscCheck(numComps[f] <= Nc, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Field %" PetscInt_FMT ": Number of selected components %" PetscInt_FMT " > %" PetscInt_FMT " number of field components", f, numComps[f], Nc); 104dd072f5fSMatthew G. Knepley for (PetscInt c = 0; c < numComps[f]; ++c, ++off) PetscCheck(comps[off] < Nc, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Field %" PetscInt_FMT ": component %" PetscInt_FMT " not in [0, %" PetscInt_FMT ")", f, comps[off], Nc); 105dd072f5fSMatthew G. Knepley bs += numComps[f]; 1069e47a1b0SMatthew G. Knepley } 107dd072f5fSMatthew G. Knepley } else { 1089e47a1b0SMatthew G. Knepley for (PetscInt f = 0; f < numFields; ++f) { 1099e47a1b0SMatthew G. Knepley PetscInt Nc; 1109e47a1b0SMatthew G. Knepley 1119e47a1b0SMatthew G. Knepley PetscCall(PetscSectionGetFieldComponents(s, fields[f], &Nc)); 1123a544194SStefano Zampini bs += Nc; 1133a544194SStefano Zampini } 114dd072f5fSMatthew G. Knepley } 1159e47a1b0SMatthew G. Knepley for (PetscInt p = pStart; p < pEnd; ++p) { 116b9eca265Ssarens PetscInt gdof, pSubSize = 0; 1174d9407bcSMatthew G. Knepley 1189e47a1b0SMatthew G. Knepley PetscCall(PetscSectionGetDof(gs, p, &gdof)); 1194d9407bcSMatthew G. Knepley if (gdof > 0) { 120dd072f5fSMatthew G. Knepley PetscInt off = 0; 1214d9407bcSMatthew G. Knepley 122dd072f5fSMatthew G. Knepley for (PetscInt f = 0; f < numFields; ++f) { 123dd072f5fSMatthew G. Knepley PetscInt fdof, fcdof, sfdof, sfcdof = 0; 124dd072f5fSMatthew G. Knepley 125dd072f5fSMatthew G. Knepley PetscCall(PetscSectionGetFieldComponents(s, f, &Nc)); 1269e47a1b0SMatthew G. Knepley PetscCall(PetscSectionGetFieldDof(s, p, fields[f], &fdof)); 1279e47a1b0SMatthew G. Knepley PetscCall(PetscSectionGetFieldConstraintDof(s, p, fields[f], &fcdof)); 128dd072f5fSMatthew G. Knepley if (numComps && numComps[f] >= 0) { 129dd072f5fSMatthew G. Knepley const PetscInt *ind; 130dd072f5fSMatthew G. Knepley 131dd072f5fSMatthew G. Knepley // Assume sets of dofs on points are of size Nc 132dd072f5fSMatthew G. Knepley PetscCheck(!(fdof % Nc), PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of components %" PetscInt_FMT " should evenly divide the dofs %" PetscInt_FMT " on point %" PetscInt_FMT, Nc, fdof, p); 133dd072f5fSMatthew G. Knepley sfdof = (fdof / Nc) * numComps[f]; 134dd072f5fSMatthew G. Knepley PetscCall(PetscSectionGetFieldConstraintIndices(s, p, fields[f], &ind)); 135dd072f5fSMatthew G. Knepley for (PetscInt i = 0; i < (fdof / Nc); ++i) { 136dd072f5fSMatthew G. Knepley for (PetscInt c = 0, fcc = 0; c < Nc; ++c) { 137dd072f5fSMatthew G. Knepley if (c == comps[off + fcc]) { 138dd072f5fSMatthew G. Knepley ++fcc; 139dd072f5fSMatthew G. Knepley ++sfcdof; 140dd072f5fSMatthew G. Knepley } 141dd072f5fSMatthew G. Knepley } 142dd072f5fSMatthew G. Knepley } 143dd072f5fSMatthew G. Knepley pSubSize += sfdof - sfcdof; 144dd072f5fSMatthew G. Knepley off += numComps[f]; 145dd072f5fSMatthew G. Knepley } else { 146b9eca265Ssarens pSubSize += fdof - fcdof; 147b9eca265Ssarens } 148dd072f5fSMatthew G. Knepley } 149b9eca265Ssarens subSize += pSubSize; 1503a544194SStefano Zampini if (pSubSize && bs != pSubSize) { 1519e47a1b0SMatthew G. Knepley // Layout does not admit a pointwise block size 152b9eca265Ssarens bs = 1; 1534d9407bcSMatthew G. Knepley } 1544d9407bcSMatthew G. Knepley } 1554d9407bcSMatthew G. Knepley } 1569e47a1b0SMatthew G. Knepley // Must have same blocksize on all procs (some might have no points) 1579371c9d4SSatish Balay bsLocal[0] = bs < 0 ? PETSC_MAX_INT : bs; 1589371c9d4SSatish Balay bsLocal[1] = bs; 1599e47a1b0SMatthew G. Knepley PetscCall(PetscGlobalMinMaxInt(PetscObjectComm((PetscObject)gs), bsLocal, bsMinMax)); 1609371c9d4SSatish Balay if (bsMinMax[0] != bsMinMax[1]) { 1619371c9d4SSatish Balay bs = 1; 1629371c9d4SSatish Balay } else { 1639371c9d4SSatish Balay bs = bsMinMax[0]; 1649371c9d4SSatish Balay } 1659566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(subSize, &subIndices)); 1669e47a1b0SMatthew G. Knepley for (PetscInt p = pStart; p < pEnd; ++p) { 1674d9407bcSMatthew G. Knepley PetscInt gdof, goff; 1684d9407bcSMatthew G. Knepley 1699e47a1b0SMatthew G. Knepley PetscCall(PetscSectionGetDof(gs, p, &gdof)); 1704d9407bcSMatthew G. Knepley if (gdof > 0) { 171dd072f5fSMatthew G. Knepley PetscInt off = 0; 172dd072f5fSMatthew G. Knepley 1739e47a1b0SMatthew G. Knepley PetscCall(PetscSectionGetOffset(gs, p, &goff)); 1749e47a1b0SMatthew G. Knepley for (PetscInt f = 0; f < numFields; ++f) { 1759e47a1b0SMatthew G. Knepley PetscInt fdof, fcdof, poff = 0; 1764d9407bcSMatthew G. Knepley 1774d9407bcSMatthew G. Knepley /* Can get rid of this loop by storing field information in the global section */ 1789e47a1b0SMatthew G. Knepley for (PetscInt f2 = 0; f2 < fields[f]; ++f2) { 1799e47a1b0SMatthew G. Knepley PetscCall(PetscSectionGetFieldDof(s, p, f2, &fdof)); 1809e47a1b0SMatthew G. Knepley PetscCall(PetscSectionGetFieldConstraintDof(s, p, f2, &fcdof)); 1814d9407bcSMatthew G. Knepley poff += fdof - fcdof; 1824d9407bcSMatthew G. Knepley } 1839e47a1b0SMatthew G. Knepley PetscCall(PetscSectionGetFieldDof(s, p, fields[f], &fdof)); 1849e47a1b0SMatthew G. Knepley PetscCall(PetscSectionGetFieldConstraintDof(s, p, fields[f], &fcdof)); 185dd072f5fSMatthew G. Knepley 186dd072f5fSMatthew G. Knepley if (numComps && numComps[f] >= 0) { 187dd072f5fSMatthew G. Knepley const PetscInt *ind; 188dd072f5fSMatthew G. Knepley 189dd072f5fSMatthew G. Knepley // Assume sets of dofs on points are of size Nc 190dd072f5fSMatthew G. Knepley PetscCall(PetscSectionGetFieldConstraintIndices(s, p, fields[f], &ind)); 191dd072f5fSMatthew G. Knepley for (PetscInt i = 0, fcoff = 0, pfoff = 0; i < (fdof / Nc); ++i) { 192dd072f5fSMatthew G. Knepley for (PetscInt c = 0, fcc = 0; c < Nc; ++c) { 193dd072f5fSMatthew G. Knepley const PetscInt k = i * Nc + c; 194dd072f5fSMatthew G. Knepley 195dd072f5fSMatthew G. Knepley if (ind[fcoff] == k) { 196dd072f5fSMatthew G. Knepley ++fcoff; 197dd072f5fSMatthew G. Knepley continue; 198dd072f5fSMatthew G. Knepley } 199dd072f5fSMatthew G. Knepley if (c == comps[off + fcc]) { 200dd072f5fSMatthew G. Knepley ++fcc; 201dd072f5fSMatthew G. Knepley subIndices[subOff++] = goff + poff + pfoff; 202dd072f5fSMatthew G. Knepley } 203dd072f5fSMatthew G. Knepley ++pfoff; 204dd072f5fSMatthew G. Knepley } 205dd072f5fSMatthew G. Knepley } 206dd072f5fSMatthew G. Knepley off += numComps[f]; 207dd072f5fSMatthew G. Knepley } else { 2089e47a1b0SMatthew G. Knepley for (PetscInt fc = 0; fc < fdof - fcdof; ++fc, ++subOff) subIndices[subOff] = goff + poff + fc; 2094d9407bcSMatthew G. Knepley } 2104d9407bcSMatthew G. Knepley } 2114d9407bcSMatthew G. Knepley } 212dd072f5fSMatthew G. Knepley } 2139e47a1b0SMatthew G. Knepley PetscCheck(subSize == subOff, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "The offset array size %" PetscInt_FMT " != %" PetscInt_FMT " the number of indices", subSize, subOff); 2149e47a1b0SMatthew G. Knepley PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)gs), subSize, subIndices, PETSC_OWN_POINTER, is)); 215627349f5SMatthew G. Knepley if (bs > 1) { 2169e47a1b0SMatthew G. Knepley // We need to check that the block size does not come from non-contiguous fields 2179e47a1b0SMatthew G. Knepley PetscInt set = 1, rset = 1; 2189e47a1b0SMatthew G. Knepley for (PetscInt i = 0; i < subSize; i += bs) { 2199e47a1b0SMatthew G. Knepley for (PetscInt j = 0; j < bs; ++j) { 2209371c9d4SSatish Balay if (subIndices[i + j] != subIndices[i] + j) { 2219371c9d4SSatish Balay set = 0; 2229371c9d4SSatish Balay break; 2239371c9d4SSatish Balay } 224627349f5SMatthew G. Knepley } 225627349f5SMatthew G. Knepley } 2269e47a1b0SMatthew G. Knepley PetscCall(MPIU_Allreduce(&set, &rset, 1, MPIU_INT, MPI_PROD, PetscObjectComm((PetscObject)gs))); 22788206212SAlexis Marboeuf if (rset) PetscCall(ISSetBlockSize(*is, bs)); 228627349f5SMatthew G. Knepley } 2299e47a1b0SMatthew G. Knepley PetscFunctionReturn(PETSC_SUCCESS); 2304d9407bcSMatthew G. Knepley } 2319e47a1b0SMatthew G. Knepley 232dd072f5fSMatthew G. Knepley static PetscErrorCode DMSelectFields_Private(DM dm, PetscSection section, PetscInt numFields, const PetscInt fields[], const PetscInt numComps[], const PetscInt comps[], IS *is, DM *subdm) 2339e47a1b0SMatthew G. Knepley { 2344d9407bcSMatthew G. Knepley PetscSection subsection; 2354d9407bcSMatthew G. Knepley PetscBool haveNull = PETSC_FALSE; 2369e47a1b0SMatthew G. Knepley PetscInt nf = 0, of = 0; 2374d9407bcSMatthew G. Knepley 2389e47a1b0SMatthew G. Knepley PetscFunctionBegin; 239dd072f5fSMatthew G. Knepley if (numComps) { 240dd072f5fSMatthew G. Knepley const PetscInt field = fields[0]; 241dd072f5fSMatthew G. Knepley 242dd072f5fSMatthew G. Knepley PetscCheck(numFields == 1, PETSC_COMM_SELF, PETSC_ERR_SUP, "We only support a single field for component selection right now"); 243dd072f5fSMatthew G. Knepley PetscCall(PetscSectionCreateComponentSubsection(section, numComps[field], comps, &subsection)); 2449566063dSJacob Faibussowitsch PetscCall(DMSetLocalSection(*subdm, subsection)); 2459566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&subsection)); 246dd072f5fSMatthew G. Knepley (*subdm)->nullspaceConstructors[field] = dm->nullspaceConstructors[field]; 247e5e52638SMatthew G. Knepley if (dm->probs) { 2489e47a1b0SMatthew G. Knepley PetscFV fv, fvNew; 249dd072f5fSMatthew G. Knepley PetscInt fnum[1] = {field}; 2500f21e855SMatthew G. Knepley 2519e47a1b0SMatthew G. Knepley PetscCall(DMSetNumFields(*subdm, 1)); 252dd072f5fSMatthew G. Knepley PetscCall(DMGetField(dm, field, NULL, (PetscObject *)&fv)); 2539e47a1b0SMatthew G. Knepley PetscCall(PetscFVClone(fv, &fvNew)); 254dd072f5fSMatthew G. Knepley PetscCall(PetscFVSetNumComponents(fvNew, numComps[0])); 2559e47a1b0SMatthew G. Knepley PetscCall(DMSetField(*subdm, 0, NULL, (PetscObject)fvNew)); 2569e47a1b0SMatthew G. Knepley PetscCall(PetscFVDestroy(&fvNew)); 2579566063dSJacob Faibussowitsch PetscCall(DMCreateDS(*subdm)); 258dd072f5fSMatthew G. Knepley if (numComps[0] == 1 && is) { 2590f21e855SMatthew G. Knepley PetscObject disc, space, pmat; 2604d9407bcSMatthew G. Knepley 261dd072f5fSMatthew G. Knepley PetscCall(DMGetField(*subdm, field, NULL, &disc)); 2629566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery(disc, "nullspace", &space)); 2639566063dSJacob Faibussowitsch if (space) PetscCall(PetscObjectCompose((PetscObject)*is, "nullspace", space)); 2649566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery(disc, "nearnullspace", &space)); 2659566063dSJacob Faibussowitsch if (space) PetscCall(PetscObjectCompose((PetscObject)*is, "nearnullspace", space)); 2669566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery(disc, "pmat", &pmat)); 2679566063dSJacob Faibussowitsch if (pmat) PetscCall(PetscObjectCompose((PetscObject)*is, "pmat", pmat)); 2684d9407bcSMatthew G. Knepley } 269dd072f5fSMatthew G. Knepley PetscCall(PetscDSCopyConstants(dm->probs[field].ds, (*subdm)->probs[0].ds)); 270dd072f5fSMatthew G. Knepley PetscCall(PetscDSCopyBoundary(dm->probs[field].ds, 1, fnum, (*subdm)->probs[0].ds)); 271dd072f5fSMatthew G. Knepley PetscCall(PetscDSSelectEquations(dm->probs[field].ds, 1, fnum, (*subdm)->probs[0].ds)); 2729e47a1b0SMatthew G. Knepley } 2739e47a1b0SMatthew G. Knepley if ((*subdm)->nullspaceConstructors[0] && is) { 2749e47a1b0SMatthew G. Knepley MatNullSpace nullSpace; 2759e47a1b0SMatthew G. Knepley 2769e47a1b0SMatthew G. Knepley PetscCall((*(*subdm)->nullspaceConstructors[0])(*subdm, 0, 0, &nullSpace)); 2779e47a1b0SMatthew G. Knepley PetscCall(PetscObjectCompose((PetscObject)*is, "nullspace", (PetscObject)nullSpace)); 2789e47a1b0SMatthew G. Knepley PetscCall(MatNullSpaceDestroy(&nullSpace)); 2799e47a1b0SMatthew G. Knepley } 2809e47a1b0SMatthew G. Knepley if (dm->coarseMesh) PetscCall(DMCreateSubDM(dm->coarseMesh, numFields, fields, NULL, &(*subdm)->coarseMesh)); 2819e47a1b0SMatthew G. Knepley PetscFunctionReturn(PETSC_SUCCESS); 2829e47a1b0SMatthew G. Knepley } 2839e47a1b0SMatthew G. Knepley PetscCall(PetscSectionCreateSubsection(section, numFields, fields, &subsection)); 2849e47a1b0SMatthew G. Knepley PetscCall(DMSetLocalSection(*subdm, subsection)); 2859e47a1b0SMatthew G. Knepley PetscCall(PetscSectionDestroy(&subsection)); 2869e47a1b0SMatthew G. Knepley for (PetscInt f = 0; f < numFields; ++f) { 2879e47a1b0SMatthew G. Knepley (*subdm)->nullspaceConstructors[f] = dm->nullspaceConstructors[fields[f]]; 2889e47a1b0SMatthew G. Knepley if ((*subdm)->nullspaceConstructors[f]) { 2899e47a1b0SMatthew G. Knepley haveNull = PETSC_TRUE; 2909e47a1b0SMatthew G. Knepley nf = f; 2919e47a1b0SMatthew G. Knepley of = fields[f]; 2929e47a1b0SMatthew G. Knepley } 2939e47a1b0SMatthew G. Knepley } 2949e47a1b0SMatthew G. Knepley if (dm->probs) { 2959e47a1b0SMatthew G. Knepley PetscCall(DMSetNumFields(*subdm, numFields)); 2969e47a1b0SMatthew G. Knepley for (PetscInt f = 0; f < numFields; ++f) { 2979e47a1b0SMatthew G. Knepley PetscObject disc; 2989e47a1b0SMatthew G. Knepley 2999e47a1b0SMatthew G. Knepley PetscCall(DMGetField(dm, fields[f], NULL, &disc)); 3009e47a1b0SMatthew G. Knepley PetscCall(DMSetField(*subdm, f, NULL, disc)); 3019e47a1b0SMatthew G. Knepley } 3029e47a1b0SMatthew G. Knepley // TODO: if only FV, then cut down the components 3039e47a1b0SMatthew G. Knepley PetscCall(DMCreateDS(*subdm)); 3049e47a1b0SMatthew G. Knepley if (numFields == 1 && is) { 3059e47a1b0SMatthew G. Knepley PetscObject disc, space, pmat; 3069e47a1b0SMatthew G. Knepley 3079e47a1b0SMatthew G. Knepley PetscCall(DMGetField(*subdm, 0, NULL, &disc)); 3089e47a1b0SMatthew G. Knepley PetscCall(PetscObjectQuery(disc, "nullspace", &space)); 3099e47a1b0SMatthew G. Knepley if (space) PetscCall(PetscObjectCompose((PetscObject)*is, "nullspace", space)); 3109e47a1b0SMatthew G. Knepley PetscCall(PetscObjectQuery(disc, "nearnullspace", &space)); 3119e47a1b0SMatthew G. Knepley if (space) PetscCall(PetscObjectCompose((PetscObject)*is, "nearnullspace", space)); 3129e47a1b0SMatthew G. Knepley PetscCall(PetscObjectQuery(disc, "pmat", &pmat)); 3139e47a1b0SMatthew G. Knepley if (pmat) PetscCall(PetscObjectCompose((PetscObject)*is, "pmat", pmat)); 3149e47a1b0SMatthew G. Knepley } 3159e47a1b0SMatthew G. Knepley // Check if DSes record their DM fields 316e21d936aSMatthew G. Knepley if (dm->probs[0].fields) { 3179310035eSMatthew G. Knepley PetscInt d, e; 3189310035eSMatthew G. Knepley 3199310035eSMatthew G. Knepley for (d = 0, e = 0; d < dm->Nds && e < (*subdm)->Nds; ++d) { 3209310035eSMatthew G. Knepley const PetscInt Nf = dm->probs[d].ds->Nf; 3219310035eSMatthew G. Knepley const PetscInt *fld; 3229310035eSMatthew G. Knepley PetscInt f, g; 3239310035eSMatthew G. Knepley 3249566063dSJacob Faibussowitsch PetscCall(ISGetIndices(dm->probs[d].fields, &fld)); 3259310035eSMatthew G. Knepley for (f = 0; f < Nf; ++f) { 3269371c9d4SSatish Balay for (g = 0; g < numFields; ++g) 3279371c9d4SSatish Balay if (fld[f] == fields[g]) break; 3289310035eSMatthew G. Knepley if (g < numFields) break; 3299310035eSMatthew G. Knepley } 3309566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(dm->probs[d].fields, &fld)); 3319310035eSMatthew G. Knepley if (f == Nf) continue; 3329566063dSJacob Faibussowitsch PetscCall(PetscDSCopyConstants(dm->probs[d].ds, (*subdm)->probs[e].ds)); 3339566063dSJacob Faibussowitsch PetscCall(PetscDSCopyBoundary(dm->probs[d].ds, numFields, fields, (*subdm)->probs[e].ds)); 3349e47a1b0SMatthew G. Knepley // Translate DM fields to DS fields 3359310035eSMatthew G. Knepley { 336e21d936aSMatthew G. Knepley IS infields, dsfields; 33774a61aaaSMatthew G. Knepley const PetscInt *fld, *ofld; 33874a61aaaSMatthew G. Knepley PetscInt *fidx; 3399e47a1b0SMatthew G. Knepley PetscInt onf, nf; 340e21d936aSMatthew G. Knepley 3419566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, numFields, fields, PETSC_USE_POINTER, &infields)); 3429566063dSJacob Faibussowitsch PetscCall(ISIntersect(infields, dm->probs[d].fields, &dsfields)); 3439566063dSJacob Faibussowitsch PetscCall(ISDestroy(&infields)); 3449566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(dsfields, &nf)); 3457a8be351SBarry Smith PetscCheck(nf, PETSC_COMM_SELF, PETSC_ERR_PLIB, "DS cannot be supported on 0 fields"); 3469566063dSJacob Faibussowitsch PetscCall(ISGetIndices(dsfields, &fld)); 3479566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(dm->probs[d].fields, &onf)); 3489566063dSJacob Faibussowitsch PetscCall(ISGetIndices(dm->probs[d].fields, &ofld)); 3499566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nf, &fidx)); 3509e47a1b0SMatthew G. Knepley for (PetscInt f = 0, g = 0; f < onf && g < nf; ++f) { 35174a61aaaSMatthew G. Knepley if (ofld[f] == fld[g]) fidx[g++] = f; 35274a61aaaSMatthew G. Knepley } 3539566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(dm->probs[d].fields, &ofld)); 3549566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(dsfields, &fld)); 3559566063dSJacob Faibussowitsch PetscCall(ISDestroy(&dsfields)); 356*bb4b53efSMatthew G. Knepley PetscCall(PetscDSSelectDiscretizations(dm->probs[0].ds, nf, fidx, PETSC_DETERMINE, PETSC_DETERMINE, (*subdm)->probs[0].ds)); 3579566063dSJacob Faibussowitsch PetscCall(PetscDSSelectEquations(dm->probs[0].ds, nf, fidx, (*subdm)->probs[0].ds)); 3589566063dSJacob Faibussowitsch PetscCall(PetscFree(fidx)); 3599310035eSMatthew G. Knepley } 3609310035eSMatthew G. Knepley ++e; 3619310035eSMatthew G. Knepley } 362e21d936aSMatthew G. Knepley } else { 3639566063dSJacob Faibussowitsch PetscCall(PetscDSCopyConstants(dm->probs[0].ds, (*subdm)->probs[0].ds)); 3649566063dSJacob Faibussowitsch PetscCall(PetscDSCopyBoundary(dm->probs[0].ds, PETSC_DETERMINE, NULL, (*subdm)->probs[0].ds)); 365*bb4b53efSMatthew G. Knepley PetscCall(PetscDSSelectDiscretizations(dm->probs[0].ds, numFields, fields, PETSC_DETERMINE, PETSC_DETERMINE, (*subdm)->probs[0].ds)); 3669566063dSJacob Faibussowitsch PetscCall(PetscDSSelectEquations(dm->probs[0].ds, numFields, fields, (*subdm)->probs[0].ds)); 367d5af271aSMatthew G. Knepley } 368e21d936aSMatthew G. Knepley } 3698cda7954SMatthew G. Knepley if (haveNull && is) { 3708cda7954SMatthew G. Knepley MatNullSpace nullSpace; 3718cda7954SMatthew G. Knepley 3729566063dSJacob Faibussowitsch PetscCall((*(*subdm)->nullspaceConstructors[nf])(*subdm, of, nf, &nullSpace)); 3739566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)*is, "nullspace", (PetscObject)nullSpace)); 3749566063dSJacob Faibussowitsch PetscCall(MatNullSpaceDestroy(&nullSpace)); 3758cda7954SMatthew G. Knepley } 37648a46eb9SPierre Jolivet if (dm->coarseMesh) PetscCall(DMCreateSubDM(dm->coarseMesh, numFields, fields, NULL, &(*subdm)->coarseMesh)); 3779e47a1b0SMatthew G. Knepley PetscFunctionReturn(PETSC_SUCCESS); 3784d9407bcSMatthew G. Knepley } 3799e47a1b0SMatthew G. Knepley 3805d83a8b1SBarry Smith /*@ 3819e47a1b0SMatthew G. Knepley DMCreateSectionSubDM - Returns an `IS` and `subDM` containing a `PetscSection` that encapsulates a subproblem defined by a subset of the fields in a `PetscSection` in the `DM`. 3829e47a1b0SMatthew G. Knepley 3839e47a1b0SMatthew G. Knepley Not Collective 3849e47a1b0SMatthew G. Knepley 3859e47a1b0SMatthew G. Knepley Input Parameters: 3869e47a1b0SMatthew G. Knepley + dm - The `DM` object 3879e47a1b0SMatthew G. Knepley . numFields - The number of fields to incorporate into `subdm` 388dd072f5fSMatthew G. Knepley . fields - The field numbers of the selected fields 389dd072f5fSMatthew G. Knepley . numComps - The number of components from each field to incorporate into `subdm`, or PETSC_DECIDE for all components 390dd072f5fSMatthew G. Knepley - comps - The component numbers of the selected fields (omitted for PTESC_DECIDE fields) 3919e47a1b0SMatthew G. Knepley 3929e47a1b0SMatthew G. Knepley Output Parameters: 3939e47a1b0SMatthew G. Knepley + is - The global indices for the subproblem or `NULL` 3949e47a1b0SMatthew G. Knepley - subdm - The `DM` for the subproblem, which must already have be cloned from `dm` or `NULL` 3959e47a1b0SMatthew G. Knepley 3969e47a1b0SMatthew G. Knepley Level: intermediate 3979e47a1b0SMatthew G. Knepley 3989e47a1b0SMatthew G. Knepley Notes: 3999e47a1b0SMatthew G. Knepley If `is` and `subdm` are both `NULL` this does nothing 4009e47a1b0SMatthew G. Knepley 4019e47a1b0SMatthew G. Knepley .seealso: `DMCreateSubDM()`, `DMGetLocalSection()`, `DMPlexSetMigrationSF()`, `DMView()` 4029e47a1b0SMatthew G. Knepley @*/ 403dd072f5fSMatthew G. Knepley PetscErrorCode DMCreateSectionSubDM(DM dm, PetscInt numFields, const PetscInt fields[], const PetscInt numComps[], const PetscInt comps[], IS *is, DM *subdm) 4049e47a1b0SMatthew G. Knepley { 4059e47a1b0SMatthew G. Knepley PetscSection section, sectionGlobal; 4069e47a1b0SMatthew G. Knepley PetscInt Nf; 4079e47a1b0SMatthew G. Knepley 4089e47a1b0SMatthew G. Knepley PetscFunctionBegin; 4099e47a1b0SMatthew G. Knepley if (!numFields) PetscFunctionReturn(PETSC_SUCCESS); 4109e47a1b0SMatthew G. Knepley PetscCall(DMGetLocalSection(dm, §ion)); 4119e47a1b0SMatthew G. Knepley PetscCall(DMGetGlobalSection(dm, §ionGlobal)); 4129e47a1b0SMatthew G. Knepley PetscCheck(section, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Must set default section for DM before splitting fields"); 4139e47a1b0SMatthew G. Knepley PetscCheck(sectionGlobal, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Must set default global section for DM before splitting fields"); 4149e47a1b0SMatthew G. Knepley PetscCall(PetscSectionGetNumFields(section, &Nf)); 4159e47a1b0SMatthew G. Knepley PetscCheck(numFields <= Nf, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Number of requested fields %" PetscInt_FMT " greater than number of DM fields %" PetscInt_FMT, numFields, Nf); 4169e47a1b0SMatthew G. Knepley 417dd072f5fSMatthew G. Knepley if (is) PetscCall(PetscSectionSelectFields_Private(section, sectionGlobal, numFields, fields, numComps, comps, is)); 418dd072f5fSMatthew G. Knepley if (subdm) PetscCall(DMSelectFields_Private(dm, section, numFields, fields, numComps, comps, is, subdm)); 4193ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4204d9407bcSMatthew G. Knepley } 4212adcc780SMatthew G. Knepley 422792b654fSMatthew G. Knepley /*@C 4230b3275a6SBarry Smith DMCreateSectionSuperDM - Returns an arrays of `IS` and a `DM` containing a `PetscSection` that encapsulates a superproblem defined by the array of `DM` and their `PetscSection` 424792b654fSMatthew G. Knepley 42520f4b53cSBarry Smith Not Collective 426792b654fSMatthew G. Knepley 427d8d19677SJose E. Roman Input Parameters: 4280b3275a6SBarry Smith + dms - The `DM` objects, the must all have the same topology; for example obtained with `DMClone()` 4290b3275a6SBarry Smith - len - The number of `DM` in `dms` 430792b654fSMatthew G. Knepley 431792b654fSMatthew G. Knepley Output Parameters: 43220f4b53cSBarry Smith + is - The global indices for the subproblem, or `NULL` 4330b3275a6SBarry Smith - superdm - The `DM` for the superproblem, which must already have be cloned and contain the same topology as the `dms` 434792b654fSMatthew G. Knepley 435792b654fSMatthew G. Knepley Level: intermediate 436792b654fSMatthew G. Knepley 437a4e35b19SJacob Faibussowitsch .seealso: `DMCreateSuperDM()`, `DMGetLocalSection()`, `DMPlexSetMigrationSF()`, `DMView()` 438792b654fSMatthew G. Knepley @*/ 4395d83a8b1SBarry Smith PetscErrorCode DMCreateSectionSuperDM(DM dms[], PetscInt len, IS *is[], DM *superdm) 440d71ae5a4SJacob Faibussowitsch { 4419796d432SMatthew G. Knepley MPI_Comm comm; 4429796d432SMatthew G. Knepley PetscSection supersection, *sections, *sectionGlobals; 4438cda7954SMatthew G. Knepley PetscInt *Nfs, Nf = 0, f, supf, oldf = -1, nullf = -1, i; 4449796d432SMatthew G. Knepley PetscBool haveNull = PETSC_FALSE; 4452adcc780SMatthew G. Knepley 4462adcc780SMatthew G. Knepley PetscFunctionBegin; 4479566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)dms[0], &comm)); 4489796d432SMatthew G. Knepley /* Pull out local and global sections */ 4499566063dSJacob Faibussowitsch PetscCall(PetscMalloc3(len, &Nfs, len, §ions, len, §ionGlobals)); 4502adcc780SMatthew G. Knepley for (i = 0; i < len; ++i) { 4519566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dms[i], §ions[i])); 4529566063dSJacob Faibussowitsch PetscCall(DMGetGlobalSection(dms[i], §ionGlobals[i])); 4537a8be351SBarry Smith PetscCheck(sections[i], comm, PETSC_ERR_ARG_WRONG, "Must set default section for DM before splitting fields"); 4547a8be351SBarry Smith PetscCheck(sectionGlobals[i], comm, PETSC_ERR_ARG_WRONG, "Must set default global section for DM before splitting fields"); 4559566063dSJacob Faibussowitsch PetscCall(PetscSectionGetNumFields(sections[i], &Nfs[i])); 4562adcc780SMatthew G. Knepley Nf += Nfs[i]; 4572adcc780SMatthew G. Knepley } 4589796d432SMatthew G. Knepley /* Create the supersection */ 4599566063dSJacob Faibussowitsch PetscCall(PetscSectionCreateSupersection(sections, len, &supersection)); 4609566063dSJacob Faibussowitsch PetscCall(DMSetLocalSection(*superdm, supersection)); 4619796d432SMatthew G. Knepley /* Create ISes */ 4622adcc780SMatthew G. Knepley if (is) { 4639796d432SMatthew G. Knepley PetscSection supersectionGlobal; 4649796d432SMatthew G. Knepley PetscInt bs = -1, startf = 0; 4652adcc780SMatthew G. Knepley 4669566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(len, is)); 4679566063dSJacob Faibussowitsch PetscCall(DMGetGlobalSection(*superdm, &supersectionGlobal)); 4689796d432SMatthew G. Knepley for (i = 0; i < len; startf += Nfs[i], ++i) { 4699796d432SMatthew G. Knepley PetscInt *subIndices; 470ec4c761aSMatthew G. Knepley PetscInt subSize, subOff, pStart, pEnd, p, start, end, dummy; 4712adcc780SMatthew G. Knepley 4729566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(sectionGlobals[i], &pStart, &pEnd)); 4739566063dSJacob Faibussowitsch PetscCall(PetscSectionGetConstrainedStorageSize(sectionGlobals[i], &subSize)); 4749566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(subSize, &subIndices)); 4759796d432SMatthew G. Knepley for (p = pStart, subOff = 0; p < pEnd; ++p) { 4769796d432SMatthew G. Knepley PetscInt gdof, gcdof, gtdof, d; 4772adcc780SMatthew G. Knepley 4789566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(sectionGlobals[i], p, &gdof)); 4799566063dSJacob Faibussowitsch PetscCall(PetscSectionGetConstraintDof(sections[i], p, &gcdof)); 4802adcc780SMatthew G. Knepley gtdof = gdof - gcdof; 4812adcc780SMatthew G. Knepley if (gdof > 0 && gtdof) { 4829371c9d4SSatish Balay if (bs < 0) { 4839371c9d4SSatish Balay bs = gtdof; 4849371c9d4SSatish Balay } else if (bs != gtdof) { 4859371c9d4SSatish Balay bs = 1; 4869371c9d4SSatish Balay } 4879566063dSJacob Faibussowitsch PetscCall(DMGetGlobalFieldOffset_Private(*superdm, p, startf, &start, &dummy)); 4889566063dSJacob Faibussowitsch PetscCall(DMGetGlobalFieldOffset_Private(*superdm, p, startf + Nfs[i] - 1, &dummy, &end)); 48963a3b9bcSJacob Faibussowitsch PetscCheck(end - start == gtdof, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Invalid number of global dofs %" PetscInt_FMT " != %" PetscInt_FMT " for dm %" PetscInt_FMT " on point %" PetscInt_FMT, end - start, gtdof, i, p); 4909796d432SMatthew G. Knepley for (d = start; d < end; ++d, ++subOff) subIndices[subOff] = d; 4912adcc780SMatthew G. Knepley } 4922adcc780SMatthew G. Knepley } 4939566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(comm, subSize, subIndices, PETSC_OWN_POINTER, &(*is)[i])); 4942adcc780SMatthew G. Knepley /* Must have same blocksize on all procs (some might have no points) */ 4959796d432SMatthew G. Knepley { 4969796d432SMatthew G. Knepley PetscInt bs = -1, bsLocal[2], bsMinMax[2]; 4979796d432SMatthew G. Knepley 4989371c9d4SSatish Balay bsLocal[0] = bs < 0 ? PETSC_MAX_INT : bs; 4999371c9d4SSatish Balay bsLocal[1] = bs; 5009566063dSJacob Faibussowitsch PetscCall(PetscGlobalMinMaxInt(comm, bsLocal, bsMinMax)); 5019371c9d4SSatish Balay if (bsMinMax[0] != bsMinMax[1]) { 5029371c9d4SSatish Balay bs = 1; 5039371c9d4SSatish Balay } else { 5049371c9d4SSatish Balay bs = bsMinMax[0]; 5059371c9d4SSatish Balay } 5069566063dSJacob Faibussowitsch PetscCall(ISSetBlockSize((*is)[i], bs)); 5072adcc780SMatthew G. Knepley } 5082adcc780SMatthew G. Knepley } 5092adcc780SMatthew G. Knepley } 5109796d432SMatthew G. Knepley /* Preserve discretizations */ 511e5e52638SMatthew G. Knepley if (len && dms[0]->probs) { 5129566063dSJacob Faibussowitsch PetscCall(DMSetNumFields(*superdm, Nf)); 5139796d432SMatthew G. Knepley for (i = 0, supf = 0; i < len; ++i) { 5149796d432SMatthew G. Knepley for (f = 0; f < Nfs[i]; ++f, ++supf) { 5152adcc780SMatthew G. Knepley PetscObject disc; 5162adcc780SMatthew G. Knepley 5179566063dSJacob Faibussowitsch PetscCall(DMGetField(dms[i], f, NULL, &disc)); 5189566063dSJacob Faibussowitsch PetscCall(DMSetField(*superdm, supf, NULL, disc)); 5192adcc780SMatthew G. Knepley } 5202adcc780SMatthew G. Knepley } 5219566063dSJacob Faibussowitsch PetscCall(DMCreateDS(*superdm)); 5222adcc780SMatthew G. Knepley } 5239796d432SMatthew G. Knepley /* Preserve nullspaces */ 5249796d432SMatthew G. Knepley for (i = 0, supf = 0; i < len; ++i) { 5259796d432SMatthew G. Knepley for (f = 0; f < Nfs[i]; ++f, ++supf) { 5269796d432SMatthew G. Knepley (*superdm)->nullspaceConstructors[supf] = dms[i]->nullspaceConstructors[f]; 5279796d432SMatthew G. Knepley if ((*superdm)->nullspaceConstructors[supf]) { 5289796d432SMatthew G. Knepley haveNull = PETSC_TRUE; 5299796d432SMatthew G. Knepley nullf = supf; 5308cda7954SMatthew G. Knepley oldf = f; 5312adcc780SMatthew G. Knepley } 5329796d432SMatthew G. Knepley } 5339796d432SMatthew G. Knepley } 5349796d432SMatthew G. Knepley /* Attach nullspace to IS */ 5359796d432SMatthew G. Knepley if (haveNull && is) { 5369796d432SMatthew G. Knepley MatNullSpace nullSpace; 5379796d432SMatthew G. Knepley 5389566063dSJacob Faibussowitsch PetscCall((*(*superdm)->nullspaceConstructors[nullf])(*superdm, oldf, nullf, &nullSpace)); 5399566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)(*is)[nullf], "nullspace", (PetscObject)nullSpace)); 5409566063dSJacob Faibussowitsch PetscCall(MatNullSpaceDestroy(&nullSpace)); 5419796d432SMatthew G. Knepley } 5429566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&supersection)); 5439566063dSJacob Faibussowitsch PetscCall(PetscFree3(Nfs, sections, sectionGlobals)); 5443ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5452adcc780SMatthew G. Knepley } 546