1 #include <petsc/private/dmimpl.h> /*I "petscdm.h" I*/ 2 #include <petscds.h> 3 4 // Greatest common divisor of two nonnegative integers 5 PetscInt PetscGCD(PetscInt a, PetscInt b) 6 { 7 while (b != 0) { 8 PetscInt tmp = b; 9 b = a % b; 10 a = tmp; 11 } 12 return a; 13 } 14 15 PetscErrorCode DMCreateGlobalVector_Section_Private(DM dm, Vec *vec) 16 { 17 PetscSection gSection; 18 PetscInt localSize, bs, blockSize = -1, pStart, pEnd, p; 19 PetscInt in[2], out[2]; 20 21 PetscFunctionBegin; 22 PetscCall(DMGetGlobalSection(dm, &gSection)); 23 PetscCall(PetscSectionGetChart(gSection, &pStart, &pEnd)); 24 for (p = pStart; p < pEnd; ++p) { 25 PetscInt dof, cdof; 26 27 PetscCall(PetscSectionGetDof(gSection, p, &dof)); 28 PetscCall(PetscSectionGetConstraintDof(gSection, p, &cdof)); 29 30 if (dof - cdof > 0) { 31 if (blockSize < 0) { 32 /* set blockSize */ 33 blockSize = dof - cdof; 34 } else { 35 blockSize = PetscGCD(dof - cdof, blockSize); 36 } 37 } 38 } 39 40 // You cannot negate PETSC_MIN_INT 41 in[0] = blockSize < 0 ? -PETSC_MAX_INT : -blockSize; 42 in[1] = blockSize; 43 PetscCall(MPIU_Allreduce(in, out, 2, MPIU_INT, MPI_MAX, PetscObjectComm((PetscObject)dm))); 44 /* -out[0] = min(blockSize), out[1] = max(blockSize) */ 45 if (-out[0] == out[1]) { 46 bs = out[1]; 47 } else bs = 1; 48 49 if (bs < 0) { /* Everyone was empty */ 50 blockSize = 1; 51 bs = 1; 52 } 53 54 PetscCall(PetscSectionGetConstrainedStorageSize(gSection, &localSize)); 55 PetscCheck(localSize % blockSize == 0, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Mismatch between blocksize %" PetscInt_FMT " and local storage size %" PetscInt_FMT, blockSize, localSize); 56 PetscCall(VecCreate(PetscObjectComm((PetscObject)dm), vec)); 57 PetscCall(VecSetSizes(*vec, localSize, PETSC_DETERMINE)); 58 PetscCall(VecSetBlockSize(*vec, bs)); 59 PetscCall(VecSetType(*vec, dm->vectype)); 60 PetscCall(VecSetDM(*vec, dm)); 61 /* PetscCall(VecSetLocalToGlobalMapping(*vec, dm->ltogmap)); */ 62 PetscFunctionReturn(PETSC_SUCCESS); 63 } 64 65 PetscErrorCode DMCreateLocalVector_Section_Private(DM dm, Vec *vec) 66 { 67 PetscSection section; 68 PetscInt localSize, blockSize = -1, pStart, pEnd, p; 69 70 PetscFunctionBegin; 71 PetscCall(DMGetLocalSection(dm, §ion)); 72 PetscCall(PetscSectionGetChart(section, &pStart, &pEnd)); 73 for (p = pStart; p < pEnd; ++p) { 74 PetscInt dof; 75 76 PetscCall(PetscSectionGetDof(section, p, &dof)); 77 if ((blockSize < 0) && (dof > 0)) blockSize = dof; 78 if (dof > 0) blockSize = PetscGCD(dof, blockSize); 79 } 80 PetscCall(PetscSectionGetStorageSize(section, &localSize)); 81 PetscCall(VecCreate(PETSC_COMM_SELF, vec)); 82 PetscCall(VecSetSizes(*vec, localSize, localSize)); 83 PetscCall(VecSetBlockSize(*vec, blockSize)); 84 PetscCall(VecSetType(*vec, dm->vectype)); 85 PetscCall(VecSetDM(*vec, dm)); 86 PetscFunctionReturn(PETSC_SUCCESS); 87 } 88 89 static PetscErrorCode PetscSectionSelectFields_Private(PetscSection s, PetscSection gs, PetscInt numFields, const PetscInt fields[], const PetscInt numComps[], const PetscInt comps[], IS *is) 90 { 91 PetscInt *subIndices; 92 PetscInt bs = 0, bsLocal[2], bsMinMax[2]; 93 PetscInt pStart, pEnd, Nc, subSize = 0, subOff = 0; 94 95 PetscFunctionBegin; 96 PetscCall(PetscSectionGetChart(gs, &pStart, &pEnd)); 97 if (numComps) { 98 for (PetscInt f = 0, off = 0; f < numFields; ++f) { 99 PetscInt Nc; 100 101 if (numComps[f] < 0) continue; 102 PetscCall(PetscSectionGetFieldComponents(s, f, &Nc)); 103 PetscCheck(numComps[f] <= Nc, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Field %" PetscInt_FMT ": Number of selected components %" PetscInt_FMT " > %" PetscInt_FMT " number of field components", f, numComps[f], Nc); 104 for (PetscInt c = 0; c < numComps[f]; ++c, ++off) PetscCheck(comps[off] < Nc, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Field %" PetscInt_FMT ": component %" PetscInt_FMT " not in [0, %" PetscInt_FMT ")", f, comps[off], Nc); 105 bs += numComps[f]; 106 } 107 } else { 108 for (PetscInt f = 0; f < numFields; ++f) { 109 PetscInt Nc; 110 111 PetscCall(PetscSectionGetFieldComponents(s, fields[f], &Nc)); 112 bs += Nc; 113 } 114 } 115 for (PetscInt p = pStart; p < pEnd; ++p) { 116 PetscInt gdof, pSubSize = 0; 117 118 PetscCall(PetscSectionGetDof(gs, p, &gdof)); 119 if (gdof > 0) { 120 PetscInt off = 0; 121 122 for (PetscInt f = 0; f < numFields; ++f) { 123 PetscInt fdof, fcdof, sfdof, sfcdof = 0; 124 125 PetscCall(PetscSectionGetFieldComponents(s, f, &Nc)); 126 PetscCall(PetscSectionGetFieldDof(s, p, fields[f], &fdof)); 127 PetscCall(PetscSectionGetFieldConstraintDof(s, p, fields[f], &fcdof)); 128 if (numComps && numComps[f] >= 0) { 129 const PetscInt *ind; 130 131 // Assume sets of dofs on points are of size Nc 132 PetscCheck(!(fdof % Nc), PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of components %" PetscInt_FMT " should evenly divide the dofs %" PetscInt_FMT " on point %" PetscInt_FMT, Nc, fdof, p); 133 sfdof = (fdof / Nc) * numComps[f]; 134 PetscCall(PetscSectionGetFieldConstraintIndices(s, p, fields[f], &ind)); 135 for (PetscInt i = 0; i < (fdof / Nc); ++i) { 136 for (PetscInt c = 0, fcc = 0; c < Nc; ++c) { 137 if (c == comps[off + fcc]) { 138 ++fcc; 139 ++sfcdof; 140 } 141 } 142 } 143 pSubSize += sfdof - sfcdof; 144 off += numComps[f]; 145 } else { 146 pSubSize += fdof - fcdof; 147 } 148 } 149 subSize += pSubSize; 150 if (pSubSize && bs != pSubSize) { 151 // Layout does not admit a pointwise block size 152 bs = 1; 153 } 154 } 155 } 156 // Must have same blocksize on all procs (some might have no points) 157 bsLocal[0] = bs < 0 ? PETSC_MAX_INT : bs; 158 bsLocal[1] = bs; 159 PetscCall(PetscGlobalMinMaxInt(PetscObjectComm((PetscObject)gs), bsLocal, bsMinMax)); 160 if (bsMinMax[0] != bsMinMax[1]) { 161 bs = 1; 162 } else { 163 bs = bsMinMax[0]; 164 } 165 PetscCall(PetscMalloc1(subSize, &subIndices)); 166 for (PetscInt p = pStart; p < pEnd; ++p) { 167 PetscInt gdof, goff; 168 169 PetscCall(PetscSectionGetDof(gs, p, &gdof)); 170 if (gdof > 0) { 171 PetscInt off = 0; 172 173 PetscCall(PetscSectionGetOffset(gs, p, &goff)); 174 for (PetscInt f = 0; f < numFields; ++f) { 175 PetscInt fdof, fcdof, poff = 0; 176 177 /* Can get rid of this loop by storing field information in the global section */ 178 for (PetscInt f2 = 0; f2 < fields[f]; ++f2) { 179 PetscCall(PetscSectionGetFieldDof(s, p, f2, &fdof)); 180 PetscCall(PetscSectionGetFieldConstraintDof(s, p, f2, &fcdof)); 181 poff += fdof - fcdof; 182 } 183 PetscCall(PetscSectionGetFieldDof(s, p, fields[f], &fdof)); 184 PetscCall(PetscSectionGetFieldConstraintDof(s, p, fields[f], &fcdof)); 185 186 if (numComps && numComps[f] >= 0) { 187 const PetscInt *ind; 188 189 // Assume sets of dofs on points are of size Nc 190 PetscCall(PetscSectionGetFieldConstraintIndices(s, p, fields[f], &ind)); 191 for (PetscInt i = 0, fcoff = 0, pfoff = 0; i < (fdof / Nc); ++i) { 192 for (PetscInt c = 0, fcc = 0; c < Nc; ++c) { 193 const PetscInt k = i * Nc + c; 194 195 if (ind[fcoff] == k) { 196 ++fcoff; 197 continue; 198 } 199 if (c == comps[off + fcc]) { 200 ++fcc; 201 subIndices[subOff++] = goff + poff + pfoff; 202 } 203 ++pfoff; 204 } 205 } 206 off += numComps[f]; 207 } else { 208 for (PetscInt fc = 0; fc < fdof - fcdof; ++fc, ++subOff) subIndices[subOff] = goff + poff + fc; 209 } 210 } 211 } 212 } 213 PetscCheck(subSize == subOff, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "The offset array size %" PetscInt_FMT " != %" PetscInt_FMT " the number of indices", subSize, subOff); 214 PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)gs), subSize, subIndices, PETSC_OWN_POINTER, is)); 215 if (bs > 1) { 216 // We need to check that the block size does not come from non-contiguous fields 217 PetscInt set = 1, rset = 1; 218 for (PetscInt i = 0; i < subSize; i += bs) { 219 for (PetscInt j = 0; j < bs; ++j) { 220 if (subIndices[i + j] != subIndices[i] + j) { 221 set = 0; 222 break; 223 } 224 } 225 } 226 PetscCall(MPIU_Allreduce(&set, &rset, 1, MPIU_INT, MPI_PROD, PetscObjectComm((PetscObject)gs))); 227 if (rset) PetscCall(ISSetBlockSize(*is, bs)); 228 } 229 PetscFunctionReturn(PETSC_SUCCESS); 230 } 231 232 static PetscErrorCode DMSelectFields_Private(DM dm, PetscSection section, PetscInt numFields, const PetscInt fields[], const PetscInt numComps[], const PetscInt comps[], IS *is, DM *subdm) 233 { 234 PetscSection subsection; 235 PetscBool haveNull = PETSC_FALSE; 236 PetscInt nf = 0, of = 0; 237 238 PetscFunctionBegin; 239 if (numComps) { 240 const PetscInt field = fields[0]; 241 242 PetscCheck(numFields == 1, PETSC_COMM_SELF, PETSC_ERR_SUP, "We only support a single field for component selection right now"); 243 PetscCall(PetscSectionCreateComponentSubsection(section, numComps[field], comps, &subsection)); 244 PetscCall(DMSetLocalSection(*subdm, subsection)); 245 PetscCall(PetscSectionDestroy(&subsection)); 246 (*subdm)->nullspaceConstructors[field] = dm->nullspaceConstructors[field]; 247 if (dm->probs) { 248 PetscFV fv, fvNew; 249 PetscInt fnum[1] = {field}; 250 251 PetscCall(DMSetNumFields(*subdm, 1)); 252 PetscCall(DMGetField(dm, field, NULL, (PetscObject *)&fv)); 253 PetscCall(PetscFVClone(fv, &fvNew)); 254 PetscCall(PetscFVSetNumComponents(fvNew, numComps[0])); 255 PetscCall(DMSetField(*subdm, 0, NULL, (PetscObject)fvNew)); 256 PetscCall(PetscFVDestroy(&fvNew)); 257 PetscCall(DMCreateDS(*subdm)); 258 if (numComps[0] == 1 && is) { 259 PetscObject disc, space, pmat; 260 261 PetscCall(DMGetField(*subdm, field, NULL, &disc)); 262 PetscCall(PetscObjectQuery(disc, "nullspace", &space)); 263 if (space) PetscCall(PetscObjectCompose((PetscObject)*is, "nullspace", space)); 264 PetscCall(PetscObjectQuery(disc, "nearnullspace", &space)); 265 if (space) PetscCall(PetscObjectCompose((PetscObject)*is, "nearnullspace", space)); 266 PetscCall(PetscObjectQuery(disc, "pmat", &pmat)); 267 if (pmat) PetscCall(PetscObjectCompose((PetscObject)*is, "pmat", pmat)); 268 } 269 PetscCall(PetscDSCopyConstants(dm->probs[field].ds, (*subdm)->probs[0].ds)); 270 PetscCall(PetscDSCopyBoundary(dm->probs[field].ds, 1, fnum, (*subdm)->probs[0].ds)); 271 PetscCall(PetscDSSelectEquations(dm->probs[field].ds, 1, fnum, (*subdm)->probs[0].ds)); 272 } 273 if ((*subdm)->nullspaceConstructors[0] && is) { 274 MatNullSpace nullSpace; 275 276 PetscCall((*(*subdm)->nullspaceConstructors[0])(*subdm, 0, 0, &nullSpace)); 277 PetscCall(PetscObjectCompose((PetscObject)*is, "nullspace", (PetscObject)nullSpace)); 278 PetscCall(MatNullSpaceDestroy(&nullSpace)); 279 } 280 if (dm->coarseMesh) PetscCall(DMCreateSubDM(dm->coarseMesh, numFields, fields, NULL, &(*subdm)->coarseMesh)); 281 PetscFunctionReturn(PETSC_SUCCESS); 282 } 283 PetscCall(PetscSectionCreateSubsection(section, numFields, fields, &subsection)); 284 PetscCall(DMSetLocalSection(*subdm, subsection)); 285 PetscCall(PetscSectionDestroy(&subsection)); 286 for (PetscInt f = 0; f < numFields; ++f) { 287 (*subdm)->nullspaceConstructors[f] = dm->nullspaceConstructors[fields[f]]; 288 if ((*subdm)->nullspaceConstructors[f]) { 289 haveNull = PETSC_TRUE; 290 nf = f; 291 of = fields[f]; 292 } 293 } 294 if (dm->probs) { 295 PetscCall(DMSetNumFields(*subdm, numFields)); 296 for (PetscInt f = 0; f < numFields; ++f) { 297 PetscObject disc; 298 299 PetscCall(DMGetField(dm, fields[f], NULL, &disc)); 300 PetscCall(DMSetField(*subdm, f, NULL, disc)); 301 } 302 // TODO: if only FV, then cut down the components 303 PetscCall(DMCreateDS(*subdm)); 304 if (numFields == 1 && is) { 305 PetscObject disc, space, pmat; 306 307 PetscCall(DMGetField(*subdm, 0, NULL, &disc)); 308 PetscCall(PetscObjectQuery(disc, "nullspace", &space)); 309 if (space) PetscCall(PetscObjectCompose((PetscObject)*is, "nullspace", space)); 310 PetscCall(PetscObjectQuery(disc, "nearnullspace", &space)); 311 if (space) PetscCall(PetscObjectCompose((PetscObject)*is, "nearnullspace", space)); 312 PetscCall(PetscObjectQuery(disc, "pmat", &pmat)); 313 if (pmat) PetscCall(PetscObjectCompose((PetscObject)*is, "pmat", pmat)); 314 } 315 // Check if DSes record their DM fields 316 if (dm->probs[0].fields) { 317 PetscInt d, e; 318 319 for (d = 0, e = 0; d < dm->Nds && e < (*subdm)->Nds; ++d) { 320 const PetscInt Nf = dm->probs[d].ds->Nf; 321 const PetscInt *fld; 322 PetscInt f, g; 323 324 PetscCall(ISGetIndices(dm->probs[d].fields, &fld)); 325 for (f = 0; f < Nf; ++f) { 326 for (g = 0; g < numFields; ++g) 327 if (fld[f] == fields[g]) break; 328 if (g < numFields) break; 329 } 330 PetscCall(ISRestoreIndices(dm->probs[d].fields, &fld)); 331 if (f == Nf) continue; 332 PetscCall(PetscDSCopyConstants(dm->probs[d].ds, (*subdm)->probs[e].ds)); 333 PetscCall(PetscDSCopyBoundary(dm->probs[d].ds, numFields, fields, (*subdm)->probs[e].ds)); 334 // Translate DM fields to DS fields 335 { 336 IS infields, dsfields; 337 const PetscInt *fld, *ofld; 338 PetscInt *fidx; 339 PetscInt onf, nf; 340 341 PetscCall(ISCreateGeneral(PETSC_COMM_SELF, numFields, fields, PETSC_USE_POINTER, &infields)); 342 PetscCall(ISIntersect(infields, dm->probs[d].fields, &dsfields)); 343 PetscCall(ISDestroy(&infields)); 344 PetscCall(ISGetLocalSize(dsfields, &nf)); 345 PetscCheck(nf, PETSC_COMM_SELF, PETSC_ERR_PLIB, "DS cannot be supported on 0 fields"); 346 PetscCall(ISGetIndices(dsfields, &fld)); 347 PetscCall(ISGetLocalSize(dm->probs[d].fields, &onf)); 348 PetscCall(ISGetIndices(dm->probs[d].fields, &ofld)); 349 PetscCall(PetscMalloc1(nf, &fidx)); 350 for (PetscInt f = 0, g = 0; f < onf && g < nf; ++f) { 351 if (ofld[f] == fld[g]) fidx[g++] = f; 352 } 353 PetscCall(ISRestoreIndices(dm->probs[d].fields, &ofld)); 354 PetscCall(ISRestoreIndices(dsfields, &fld)); 355 PetscCall(ISDestroy(&dsfields)); 356 PetscCall(PetscDSSelectDiscretizations(dm->probs[0].ds, nf, fidx, (*subdm)->probs[0].ds)); 357 PetscCall(PetscDSSelectEquations(dm->probs[0].ds, nf, fidx, (*subdm)->probs[0].ds)); 358 PetscCall(PetscFree(fidx)); 359 } 360 ++e; 361 } 362 } else { 363 PetscCall(PetscDSCopyConstants(dm->probs[0].ds, (*subdm)->probs[0].ds)); 364 PetscCall(PetscDSCopyBoundary(dm->probs[0].ds, PETSC_DETERMINE, NULL, (*subdm)->probs[0].ds)); 365 PetscCall(PetscDSSelectDiscretizations(dm->probs[0].ds, numFields, fields, (*subdm)->probs[0].ds)); 366 PetscCall(PetscDSSelectEquations(dm->probs[0].ds, numFields, fields, (*subdm)->probs[0].ds)); 367 } 368 } 369 if (haveNull && is) { 370 MatNullSpace nullSpace; 371 372 PetscCall((*(*subdm)->nullspaceConstructors[nf])(*subdm, of, nf, &nullSpace)); 373 PetscCall(PetscObjectCompose((PetscObject)*is, "nullspace", (PetscObject)nullSpace)); 374 PetscCall(MatNullSpaceDestroy(&nullSpace)); 375 } 376 if (dm->coarseMesh) PetscCall(DMCreateSubDM(dm->coarseMesh, numFields, fields, NULL, &(*subdm)->coarseMesh)); 377 PetscFunctionReturn(PETSC_SUCCESS); 378 } 379 380 /*@C 381 DMCreateSectionSubDM - Returns an `IS` and `subDM` containing a `PetscSection` that encapsulates a subproblem defined by a subset of the fields in a `PetscSection` in the `DM`. 382 383 Not Collective 384 385 Input Parameters: 386 + dm - The `DM` object 387 . numFields - The number of fields to incorporate into `subdm` 388 . fields - The field numbers of the selected fields 389 . numComps - The number of components from each field to incorporate into `subdm`, or PETSC_DECIDE for all components 390 - comps - The component numbers of the selected fields (omitted for PTESC_DECIDE fields) 391 392 Output Parameters: 393 + is - The global indices for the subproblem or `NULL` 394 - subdm - The `DM` for the subproblem, which must already have be cloned from `dm` or `NULL` 395 396 Level: intermediate 397 398 Notes: 399 If `is` and `subdm` are both `NULL` this does nothing 400 401 .seealso: `DMCreateSubDM()`, `DMGetLocalSection()`, `DMPlexSetMigrationSF()`, `DMView()` 402 @*/ 403 PetscErrorCode DMCreateSectionSubDM(DM dm, PetscInt numFields, const PetscInt fields[], const PetscInt numComps[], const PetscInt comps[], IS *is, DM *subdm) 404 { 405 PetscSection section, sectionGlobal; 406 PetscInt Nf; 407 408 PetscFunctionBegin; 409 if (!numFields) PetscFunctionReturn(PETSC_SUCCESS); 410 PetscCall(DMGetLocalSection(dm, §ion)); 411 PetscCall(DMGetGlobalSection(dm, §ionGlobal)); 412 PetscCheck(section, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Must set default section for DM before splitting fields"); 413 PetscCheck(sectionGlobal, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Must set default global section for DM before splitting fields"); 414 PetscCall(PetscSectionGetNumFields(section, &Nf)); 415 PetscCheck(numFields <= Nf, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Number of requested fields %" PetscInt_FMT " greater than number of DM fields %" PetscInt_FMT, numFields, Nf); 416 417 if (is) PetscCall(PetscSectionSelectFields_Private(section, sectionGlobal, numFields, fields, numComps, comps, is)); 418 if (subdm) PetscCall(DMSelectFields_Private(dm, section, numFields, fields, numComps, comps, is, subdm)); 419 PetscFunctionReturn(PETSC_SUCCESS); 420 } 421 422 /*@C 423 DMCreateSectionSuperDM - Returns an arrays of `IS` and a `DM` containing a `PetscSection` that encapsulates a superproblem defined by the array of `DM` and their `PetscSection` 424 425 Not Collective 426 427 Input Parameters: 428 + dms - The `DM` objects, the must all have the same topology; for example obtained with `DMClone()` 429 - len - The number of `DM` in `dms` 430 431 Output Parameters: 432 + is - The global indices for the subproblem, or `NULL` 433 - superdm - The `DM` for the superproblem, which must already have be cloned and contain the same topology as the `dms` 434 435 Level: intermediate 436 437 .seealso: `DMCreateSuperDM()`, `DMGetLocalSection()`, `DMPlexSetMigrationSF()`, `DMView()` 438 @*/ 439 PetscErrorCode DMCreateSectionSuperDM(DM dms[], PetscInt len, IS **is, DM *superdm) 440 { 441 MPI_Comm comm; 442 PetscSection supersection, *sections, *sectionGlobals; 443 PetscInt *Nfs, Nf = 0, f, supf, oldf = -1, nullf = -1, i; 444 PetscBool haveNull = PETSC_FALSE; 445 446 PetscFunctionBegin; 447 PetscCall(PetscObjectGetComm((PetscObject)dms[0], &comm)); 448 /* Pull out local and global sections */ 449 PetscCall(PetscMalloc3(len, &Nfs, len, §ions, len, §ionGlobals)); 450 for (i = 0; i < len; ++i) { 451 PetscCall(DMGetLocalSection(dms[i], §ions[i])); 452 PetscCall(DMGetGlobalSection(dms[i], §ionGlobals[i])); 453 PetscCheck(sections[i], comm, PETSC_ERR_ARG_WRONG, "Must set default section for DM before splitting fields"); 454 PetscCheck(sectionGlobals[i], comm, PETSC_ERR_ARG_WRONG, "Must set default global section for DM before splitting fields"); 455 PetscCall(PetscSectionGetNumFields(sections[i], &Nfs[i])); 456 Nf += Nfs[i]; 457 } 458 /* Create the supersection */ 459 PetscCall(PetscSectionCreateSupersection(sections, len, &supersection)); 460 PetscCall(DMSetLocalSection(*superdm, supersection)); 461 /* Create ISes */ 462 if (is) { 463 PetscSection supersectionGlobal; 464 PetscInt bs = -1, startf = 0; 465 466 PetscCall(PetscMalloc1(len, is)); 467 PetscCall(DMGetGlobalSection(*superdm, &supersectionGlobal)); 468 for (i = 0; i < len; startf += Nfs[i], ++i) { 469 PetscInt *subIndices; 470 PetscInt subSize, subOff, pStart, pEnd, p, start, end, dummy; 471 472 PetscCall(PetscSectionGetChart(sectionGlobals[i], &pStart, &pEnd)); 473 PetscCall(PetscSectionGetConstrainedStorageSize(sectionGlobals[i], &subSize)); 474 PetscCall(PetscMalloc1(subSize, &subIndices)); 475 for (p = pStart, subOff = 0; p < pEnd; ++p) { 476 PetscInt gdof, gcdof, gtdof, d; 477 478 PetscCall(PetscSectionGetDof(sectionGlobals[i], p, &gdof)); 479 PetscCall(PetscSectionGetConstraintDof(sections[i], p, &gcdof)); 480 gtdof = gdof - gcdof; 481 if (gdof > 0 && gtdof) { 482 if (bs < 0) { 483 bs = gtdof; 484 } else if (bs != gtdof) { 485 bs = 1; 486 } 487 PetscCall(DMGetGlobalFieldOffset_Private(*superdm, p, startf, &start, &dummy)); 488 PetscCall(DMGetGlobalFieldOffset_Private(*superdm, p, startf + Nfs[i] - 1, &dummy, &end)); 489 PetscCheck(end - start == gtdof, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Invalid number of global dofs %" PetscInt_FMT " != %" PetscInt_FMT " for dm %" PetscInt_FMT " on point %" PetscInt_FMT, end - start, gtdof, i, p); 490 for (d = start; d < end; ++d, ++subOff) subIndices[subOff] = d; 491 } 492 } 493 PetscCall(ISCreateGeneral(comm, subSize, subIndices, PETSC_OWN_POINTER, &(*is)[i])); 494 /* Must have same blocksize on all procs (some might have no points) */ 495 { 496 PetscInt bs = -1, bsLocal[2], bsMinMax[2]; 497 498 bsLocal[0] = bs < 0 ? PETSC_MAX_INT : bs; 499 bsLocal[1] = bs; 500 PetscCall(PetscGlobalMinMaxInt(comm, bsLocal, bsMinMax)); 501 if (bsMinMax[0] != bsMinMax[1]) { 502 bs = 1; 503 } else { 504 bs = bsMinMax[0]; 505 } 506 PetscCall(ISSetBlockSize((*is)[i], bs)); 507 } 508 } 509 } 510 /* Preserve discretizations */ 511 if (len && dms[0]->probs) { 512 PetscCall(DMSetNumFields(*superdm, Nf)); 513 for (i = 0, supf = 0; i < len; ++i) { 514 for (f = 0; f < Nfs[i]; ++f, ++supf) { 515 PetscObject disc; 516 517 PetscCall(DMGetField(dms[i], f, NULL, &disc)); 518 PetscCall(DMSetField(*superdm, supf, NULL, disc)); 519 } 520 } 521 PetscCall(DMCreateDS(*superdm)); 522 } 523 /* Preserve nullspaces */ 524 for (i = 0, supf = 0; i < len; ++i) { 525 for (f = 0; f < Nfs[i]; ++f, ++supf) { 526 (*superdm)->nullspaceConstructors[supf] = dms[i]->nullspaceConstructors[f]; 527 if ((*superdm)->nullspaceConstructors[supf]) { 528 haveNull = PETSC_TRUE; 529 nullf = supf; 530 oldf = f; 531 } 532 } 533 } 534 /* Attach nullspace to IS */ 535 if (haveNull && is) { 536 MatNullSpace nullSpace; 537 538 PetscCall((*(*superdm)->nullspaceConstructors[nullf])(*superdm, oldf, nullf, &nullSpace)); 539 PetscCall(PetscObjectCompose((PetscObject)(*is)[nullf], "nullspace", (PetscObject)nullSpace)); 540 PetscCall(MatNullSpaceDestroy(&nullSpace)); 541 } 542 PetscCall(PetscSectionDestroy(&supersection)); 543 PetscCall(PetscFree3(Nfs, sections, sectionGlobals)); 544 PetscFunctionReturn(PETSC_SUCCESS); 545 } 546