1 #include <petsc/private/dmimpl.h> /*I "petscdm.h" I*/ 2 #include <petscds.h> 3 4 // Greatest common divisor of two nonnegative integers 5 PetscInt PetscGCD(PetscInt a, PetscInt b) 6 { 7 while (b != 0) { 8 PetscInt tmp = b; 9 b = a % b; 10 a = tmp; 11 } 12 return a; 13 } 14 15 PetscErrorCode DMCreateGlobalVector_Section_Private(DM dm, Vec *vec) 16 { 17 PetscSection gSection; 18 PetscInt localSize, bs, blockSize = -1, pStart, pEnd, p; 19 PetscInt in[2], out[2]; 20 21 PetscFunctionBegin; 22 PetscCall(DMGetGlobalSection(dm, &gSection)); 23 PetscCall(PetscSectionGetChart(gSection, &pStart, &pEnd)); 24 for (p = pStart; p < pEnd; ++p) { 25 PetscInt dof, cdof; 26 27 PetscCall(PetscSectionGetDof(gSection, p, &dof)); 28 PetscCall(PetscSectionGetConstraintDof(gSection, p, &cdof)); 29 30 if (dof - cdof > 0) { 31 if (blockSize < 0) { 32 /* set blockSize */ 33 blockSize = dof - cdof; 34 } else { 35 blockSize = PetscGCD(dof - cdof, blockSize); 36 } 37 } 38 } 39 40 // You cannot negate PETSC_INT_MIN 41 in[0] = blockSize < 0 ? -PETSC_INT_MAX : -blockSize; 42 in[1] = blockSize; 43 PetscCallMPI(MPIU_Allreduce(in, out, 2, MPIU_INT, MPI_MAX, PetscObjectComm((PetscObject)dm))); 44 /* -out[0] = min(blockSize), out[1] = max(blockSize) */ 45 if (-out[0] == out[1]) { 46 bs = out[1]; 47 } else bs = 1; 48 49 if (bs < 0) { /* Everyone was empty */ 50 blockSize = 1; 51 bs = 1; 52 } 53 54 PetscCall(PetscSectionGetConstrainedStorageSize(gSection, &localSize)); 55 PetscCheck(localSize % blockSize == 0, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Mismatch between blocksize %" PetscInt_FMT " and local storage size %" PetscInt_FMT, blockSize, localSize); 56 PetscCall(VecCreate(PetscObjectComm((PetscObject)dm), vec)); 57 PetscCall(VecSetSizes(*vec, localSize, PETSC_DETERMINE)); 58 PetscCall(VecSetBlockSize(*vec, bs)); 59 PetscCall(VecSetType(*vec, dm->vectype)); 60 PetscCall(VecSetDM(*vec, dm)); 61 /* PetscCall(VecSetLocalToGlobalMapping(*vec, dm->ltogmap)); */ 62 PetscFunctionReturn(PETSC_SUCCESS); 63 } 64 65 PetscErrorCode DMCreateLocalVector_Section_Private(DM dm, Vec *vec) 66 { 67 PetscSection section; 68 PetscInt localSize, blockSize = -1, pStart, pEnd, p; 69 70 PetscFunctionBegin; 71 PetscCall(DMGetLocalSection(dm, §ion)); 72 PetscCall(PetscSectionGetChart(section, &pStart, &pEnd)); 73 for (p = pStart; p < pEnd; ++p) { 74 PetscInt dof; 75 76 PetscCall(PetscSectionGetDof(section, p, &dof)); 77 if ((blockSize < 0) && (dof > 0)) blockSize = dof; 78 if (dof > 0) blockSize = PetscGCD(dof, blockSize); 79 } 80 PetscCall(PetscSectionGetStorageSize(section, &localSize)); 81 PetscCall(VecCreate(PETSC_COMM_SELF, vec)); 82 PetscCall(VecSetSizes(*vec, localSize, localSize)); 83 PetscCall(VecSetBlockSize(*vec, PetscAbs(blockSize))); 84 PetscCall(VecSetType(*vec, dm->vectype)); 85 PetscCall(VecSetDM(*vec, dm)); 86 PetscFunctionReturn(PETSC_SUCCESS); 87 } 88 89 static PetscErrorCode PetscSectionSelectFields_Private(PetscSection s, PetscSection gs, PetscInt numFields, const PetscInt fields[], const PetscInt numComps[], const PetscInt comps[], IS *is) 90 { 91 IS permutation; 92 const PetscInt *perm = NULL; 93 PetscInt *subIndices; 94 PetscInt mbs, bs = 0, bsLocal[2], bsMinMax[2]; 95 PetscInt pStart, pEnd, Nc, subSize = 0, subOff = 0; 96 97 PetscFunctionBegin; 98 PetscCall(PetscSectionGetChart(gs, &pStart, &pEnd)); 99 PetscCall(PetscSectionGetPermutation(s, &permutation)); 100 if (permutation) PetscCall(ISGetIndices(permutation, &perm)); 101 if (numComps) { 102 for (PetscInt f = 0, off = 0; f < numFields; ++f) { 103 PetscInt Nc; 104 105 if (numComps[f] < 0) continue; 106 PetscCall(PetscSectionGetFieldComponents(s, f, &Nc)); 107 PetscCheck(numComps[f] <= Nc, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Field %" PetscInt_FMT ": Number of selected components %" PetscInt_FMT " > %" PetscInt_FMT " number of field components", f, numComps[f], Nc); 108 for (PetscInt c = 0; c < numComps[f]; ++c, ++off) PetscCheck(comps[off] < Nc, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Field %" PetscInt_FMT ": component %" PetscInt_FMT " not in [0, %" PetscInt_FMT ")", f, comps[off], Nc); 109 bs += numComps[f]; 110 } 111 } else { 112 for (PetscInt f = 0; f < numFields; ++f) { 113 PetscInt Nc; 114 115 PetscCall(PetscSectionGetFieldComponents(s, fields[f], &Nc)); 116 bs += Nc; 117 } 118 } 119 mbs = -1; /* multiple of block size not set */ 120 for (PetscInt p = pStart; p < pEnd; ++p) { 121 const PetscInt point = perm ? perm[p - pStart] : p; 122 PetscInt gdof, pSubSize = 0; 123 124 PetscCall(PetscSectionGetDof(gs, point, &gdof)); 125 if (gdof > 0) { 126 PetscInt off = 0; 127 128 for (PetscInt f = 0; f < numFields; ++f) { 129 PetscInt fdof, fcdof, sfdof, sfcdof = 0; 130 131 PetscCall(PetscSectionGetFieldComponents(s, f, &Nc)); 132 PetscCall(PetscSectionGetFieldDof(s, point, fields[f], &fdof)); 133 PetscCall(PetscSectionGetFieldConstraintDof(s, point, fields[f], &fcdof)); 134 if (numComps && numComps[f] >= 0) { 135 const PetscInt *ind; 136 137 // Assume sets of dofs on points are of size Nc 138 PetscCheck(!(fdof % Nc), PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of components %" PetscInt_FMT " should evenly divide the dofs %" PetscInt_FMT " on point %" PetscInt_FMT, Nc, fdof, point); 139 sfdof = (fdof / Nc) * numComps[f]; 140 PetscCall(PetscSectionGetFieldConstraintIndices(s, point, fields[f], &ind)); 141 for (PetscInt i = 0; i < (fdof / Nc); ++i) { 142 for (PetscInt c = 0, fcc = 0; c < Nc; ++c) { 143 if (c == comps[off + fcc]) { 144 ++fcc; 145 ++sfcdof; 146 } 147 } 148 } 149 pSubSize += sfdof - sfcdof; 150 off += numComps[f]; 151 } else { 152 pSubSize += fdof - fcdof; 153 } 154 } 155 subSize += pSubSize; 156 if (pSubSize && pSubSize % bs) { 157 // Layout does not admit a pointwise block size -> set mbs to 0 158 mbs = 0; 159 } else if (pSubSize) { 160 if (mbs == -1) mbs = pSubSize / bs; 161 else mbs = PetscMin(mbs, pSubSize / bs); 162 } 163 } 164 } 165 166 // Must have same blocksize on all procs (some might have no points) 167 bsLocal[0] = mbs < 0 ? PETSC_INT_MAX : mbs; 168 bsLocal[1] = mbs; 169 PetscCall(PetscGlobalMinMaxInt(PetscObjectComm((PetscObject)gs), bsLocal, bsMinMax)); 170 if (bsMinMax[0] != bsMinMax[1]) { /* different multiple of block size -> set bs to 1 */ 171 bs = 1; 172 } else { /* same multiple */ 173 mbs = bsMinMax[0]; 174 bs *= mbs; 175 } 176 PetscCall(PetscMalloc1(subSize, &subIndices)); 177 for (PetscInt p = pStart; p < pEnd; ++p) { 178 const PetscInt point = perm ? perm[p - pStart] : p; 179 PetscInt gdof, goff; 180 181 PetscCall(PetscSectionGetDof(gs, point, &gdof)); 182 if (gdof > 0) { 183 PetscInt off = 0; 184 185 PetscCall(PetscSectionGetOffset(gs, point, &goff)); 186 for (PetscInt f = 0; f < numFields; ++f) { 187 PetscInt fdof, fcdof, poff = 0; 188 189 /* Can get rid of this loop by storing field information in the global section */ 190 for (PetscInt f2 = 0; f2 < fields[f]; ++f2) { 191 PetscCall(PetscSectionGetFieldDof(s, point, f2, &fdof)); 192 PetscCall(PetscSectionGetFieldConstraintDof(s, point, f2, &fcdof)); 193 poff += fdof - fcdof; 194 } 195 PetscCall(PetscSectionGetFieldDof(s, point, fields[f], &fdof)); 196 PetscCall(PetscSectionGetFieldConstraintDof(s, point, fields[f], &fcdof)); 197 198 if (numComps && numComps[f] >= 0) { 199 const PetscInt *ind; 200 201 // Assume sets of dofs on points are of size Nc 202 PetscCall(PetscSectionGetFieldConstraintIndices(s, point, fields[f], &ind)); 203 for (PetscInt i = 0, fcoff = 0, pfoff = 0; i < (fdof / Nc); ++i) { 204 for (PetscInt c = 0, fcc = 0; c < Nc; ++c) { 205 const PetscInt k = i * Nc + c; 206 207 if (ind[fcoff] == k) { 208 ++fcoff; 209 continue; 210 } 211 if (c == comps[off + fcc]) { 212 ++fcc; 213 subIndices[subOff++] = goff + poff + pfoff; 214 } 215 ++pfoff; 216 } 217 } 218 off += numComps[f]; 219 } else { 220 for (PetscInt fc = 0; fc < fdof - fcdof; ++fc, ++subOff) subIndices[subOff] = goff + poff + fc; 221 } 222 } 223 } 224 } 225 if (permutation) PetscCall(ISRestoreIndices(permutation, &perm)); 226 PetscCheck(subSize == subOff, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "The offset array size %" PetscInt_FMT " != %" PetscInt_FMT " the number of indices", subSize, subOff); 227 PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)gs), subSize, subIndices, PETSC_OWN_POINTER, is)); 228 if (bs > 1) { 229 // We need to check that the block size does not come from non-contiguous fields 230 PetscInt set = 1, rset = 1; 231 for (PetscInt i = 0; i < subSize; i += bs) { 232 for (PetscInt j = 0; j < bs; ++j) { 233 if (subIndices[i + j] != subIndices[i] + j) { 234 set = 0; 235 break; 236 } 237 } 238 } 239 PetscCallMPI(MPIU_Allreduce(&set, &rset, 1, MPIU_INT, MPI_PROD, PetscObjectComm((PetscObject)gs))); 240 if (rset) PetscCall(ISSetBlockSize(*is, bs)); 241 } 242 PetscFunctionReturn(PETSC_SUCCESS); 243 } 244 245 static PetscErrorCode DMSelectFields_Private(DM dm, PetscSection section, PetscInt numFields, const PetscInt fields[], const PetscInt numComps[], const PetscInt comps[], IS *is, DM *subdm) 246 { 247 PetscSection subsection; 248 PetscBool haveNull = PETSC_FALSE; 249 PetscInt nf = 0, of = 0; 250 251 PetscFunctionBegin; 252 // Create nullspace constructor slots 253 if (dm->nullspaceConstructors) { 254 PetscCall(PetscFree2((*subdm)->nullspaceConstructors, (*subdm)->nearnullspaceConstructors)); 255 PetscCall(PetscCalloc2(numFields, &(*subdm)->nullspaceConstructors, numFields, &(*subdm)->nearnullspaceConstructors)); 256 } 257 if (numComps) { 258 const PetscInt field = fields[0]; 259 260 PetscCheck(numFields == 1, PETSC_COMM_SELF, PETSC_ERR_SUP, "We only support a single field for component selection right now"); 261 PetscCall(PetscSectionCreateComponentSubsection(section, numComps[field], comps, &subsection)); 262 PetscCall(DMSetLocalSection(*subdm, subsection)); 263 PetscCall(PetscSectionDestroy(&subsection)); 264 if (dm->nullspaceConstructors) (*subdm)->nullspaceConstructors[field] = dm->nullspaceConstructors[field]; 265 if (dm->probs) { 266 PetscFV fv, fvNew; 267 PetscInt fnum[1] = {field}; 268 269 PetscCall(DMSetNumFields(*subdm, 1)); 270 PetscCall(DMGetField(dm, field, NULL, (PetscObject *)&fv)); 271 PetscCall(PetscFVClone(fv, &fvNew)); 272 PetscCall(PetscFVSetNumComponents(fvNew, numComps[0])); 273 PetscCall(DMSetField(*subdm, 0, NULL, (PetscObject)fvNew)); 274 PetscCall(PetscFVDestroy(&fvNew)); 275 PetscCall(DMCreateDS(*subdm)); 276 if (numComps[0] == 1 && is) { 277 PetscObject disc, space, pmat; 278 279 PetscCall(DMGetField(*subdm, field, NULL, &disc)); 280 PetscCall(PetscObjectQuery(disc, "nullspace", &space)); 281 if (space) PetscCall(PetscObjectCompose((PetscObject)*is, "nullspace", space)); 282 PetscCall(PetscObjectQuery(disc, "nearnullspace", &space)); 283 if (space) PetscCall(PetscObjectCompose((PetscObject)*is, "nearnullspace", space)); 284 PetscCall(PetscObjectQuery(disc, "pmat", &pmat)); 285 if (pmat) PetscCall(PetscObjectCompose((PetscObject)*is, "pmat", pmat)); 286 } 287 PetscCall(PetscDSCopyConstants(dm->probs[field].ds, (*subdm)->probs[0].ds)); 288 PetscCall(PetscDSCopyBoundary(dm->probs[field].ds, 1, fnum, (*subdm)->probs[0].ds)); 289 PetscCall(PetscDSSelectEquations(dm->probs[field].ds, 1, fnum, (*subdm)->probs[0].ds)); 290 } 291 if ((*subdm)->nullspaceConstructors && (*subdm)->nullspaceConstructors[0] && is) { 292 MatNullSpace nullSpace; 293 294 PetscCall((*(*subdm)->nullspaceConstructors[0])(*subdm, 0, 0, &nullSpace)); 295 PetscCall(PetscObjectCompose((PetscObject)*is, "nullspace", (PetscObject)nullSpace)); 296 PetscCall(MatNullSpaceDestroy(&nullSpace)); 297 } 298 if (dm->coarseMesh) PetscCall(DMCreateSubDM(dm->coarseMesh, numFields, fields, NULL, &(*subdm)->coarseMesh)); 299 PetscFunctionReturn(PETSC_SUCCESS); 300 } 301 PetscCall(PetscSectionCreateSubsection(section, numFields, fields, &subsection)); 302 PetscCall(DMSetLocalSection(*subdm, subsection)); 303 PetscCall(PetscSectionDestroy(&subsection)); 304 if (dm->probs) { 305 PetscCall(DMSetNumFields(*subdm, numFields)); 306 for (PetscInt f = 0; f < numFields; ++f) { 307 PetscObject disc; 308 309 PetscCall(DMGetField(dm, fields[f], NULL, &disc)); 310 PetscCall(DMSetField(*subdm, f, NULL, disc)); 311 } 312 // TODO: if only FV, then cut down the components 313 PetscCall(DMCreateDS(*subdm)); 314 if (numFields == 1 && is) { 315 PetscObject disc, space, pmat; 316 317 PetscCall(DMGetField(*subdm, 0, NULL, &disc)); 318 PetscCall(PetscObjectQuery(disc, "nullspace", &space)); 319 if (space) PetscCall(PetscObjectCompose((PetscObject)*is, "nullspace", space)); 320 PetscCall(PetscObjectQuery(disc, "nearnullspace", &space)); 321 if (space) PetscCall(PetscObjectCompose((PetscObject)*is, "nearnullspace", space)); 322 PetscCall(PetscObjectQuery(disc, "pmat", &pmat)); 323 if (pmat) PetscCall(PetscObjectCompose((PetscObject)*is, "pmat", pmat)); 324 } 325 // Check if DSes record their DM fields 326 if (dm->probs[0].fields) { 327 PetscInt d, e; 328 329 for (d = 0, e = 0; d < dm->Nds && e < (*subdm)->Nds; ++d) { 330 const PetscInt Nf = dm->probs[d].ds->Nf; 331 const PetscInt *fld; 332 PetscInt f, g; 333 334 PetscCall(ISGetIndices(dm->probs[d].fields, &fld)); 335 for (f = 0; f < Nf; ++f) { 336 for (g = 0; g < numFields; ++g) 337 if (fld[f] == fields[g]) break; 338 if (g < numFields) break; 339 } 340 PetscCall(ISRestoreIndices(dm->probs[d].fields, &fld)); 341 if (f == Nf) continue; 342 PetscCall(PetscDSCopyConstants(dm->probs[d].ds, (*subdm)->probs[e].ds)); 343 PetscCall(PetscDSCopyBoundary(dm->probs[d].ds, numFields, fields, (*subdm)->probs[e].ds)); 344 // Translate DM fields to DS fields 345 { 346 IS infields, dsfields; 347 const PetscInt *fld, *ofld; 348 PetscInt *fidx; 349 PetscInt onf, nf; 350 351 PetscCall(ISCreateGeneral(PETSC_COMM_SELF, numFields, fields, PETSC_USE_POINTER, &infields)); 352 PetscCall(ISIntersect(infields, dm->probs[d].fields, &dsfields)); 353 PetscCall(ISDestroy(&infields)); 354 PetscCall(ISGetLocalSize(dsfields, &nf)); 355 PetscCheck(nf, PETSC_COMM_SELF, PETSC_ERR_PLIB, "DS cannot be supported on 0 fields"); 356 PetscCall(ISGetIndices(dsfields, &fld)); 357 PetscCall(ISGetLocalSize(dm->probs[d].fields, &onf)); 358 PetscCall(ISGetIndices(dm->probs[d].fields, &ofld)); 359 PetscCall(PetscMalloc1(nf, &fidx)); 360 for (PetscInt f = 0, g = 0; f < onf && g < nf; ++f) { 361 if (ofld[f] == fld[g]) fidx[g++] = f; 362 } 363 PetscCall(ISRestoreIndices(dm->probs[d].fields, &ofld)); 364 PetscCall(ISRestoreIndices(dsfields, &fld)); 365 PetscCall(ISDestroy(&dsfields)); 366 PetscCall(PetscDSSelectDiscretizations(dm->probs[0].ds, nf, fidx, PETSC_DETERMINE, PETSC_DETERMINE, (*subdm)->probs[0].ds)); 367 PetscCall(PetscDSSelectEquations(dm->probs[0].ds, nf, fidx, (*subdm)->probs[0].ds)); 368 PetscCall(PetscFree(fidx)); 369 } 370 ++e; 371 } 372 } else { 373 PetscCall(PetscDSCopyConstants(dm->probs[0].ds, (*subdm)->probs[0].ds)); 374 PetscCall(PetscDSCopyBoundary(dm->probs[0].ds, PETSC_DETERMINE, NULL, (*subdm)->probs[0].ds)); 375 PetscCall(PetscDSSelectDiscretizations(dm->probs[0].ds, numFields, fields, PETSC_DETERMINE, PETSC_DETERMINE, (*subdm)->probs[0].ds)); 376 PetscCall(PetscDSSelectEquations(dm->probs[0].ds, numFields, fields, (*subdm)->probs[0].ds)); 377 } 378 } 379 for (PetscInt f = 0; f < numFields; ++f) { 380 if (dm->nullspaceConstructors) { 381 (*subdm)->nullspaceConstructors[f] = dm->nullspaceConstructors[fields[f]]; 382 if ((*subdm)->nullspaceConstructors[f]) { 383 haveNull = PETSC_TRUE; 384 nf = f; 385 of = fields[f]; 386 } 387 } 388 } 389 if (haveNull && is) { 390 MatNullSpace nullSpace; 391 392 PetscCall((*(*subdm)->nullspaceConstructors[nf])(*subdm, of, nf, &nullSpace)); 393 PetscCall(PetscObjectCompose((PetscObject)*is, "nullspace", (PetscObject)nullSpace)); 394 PetscCall(MatNullSpaceDestroy(&nullSpace)); 395 } 396 if (dm->coarseMesh) PetscCall(DMCreateSubDM(dm->coarseMesh, numFields, fields, NULL, &(*subdm)->coarseMesh)); 397 PetscFunctionReturn(PETSC_SUCCESS); 398 } 399 400 /*@ 401 DMCreateSectionSubDM - Returns an `IS` and `subDM` containing a `PetscSection` that encapsulates a subproblem defined by a subset of the fields in a `PetscSection` in the `DM`. 402 403 Not Collective 404 405 Input Parameters: 406 + dm - The `DM` object 407 . numFields - The number of fields to incorporate into `subdm` 408 . fields - The field numbers of the selected fields 409 . numComps - The number of components from each field to incorporate into `subdm`, or PETSC_DECIDE for all components 410 - comps - The component numbers of the selected fields (omitted for PTESC_DECIDE fields) 411 412 Output Parameters: 413 + is - The global indices for the subproblem or `NULL` 414 - subdm - The `DM` for the subproblem, which must already have be cloned from `dm` or `NULL` 415 416 Level: intermediate 417 418 Notes: 419 If `is` and `subdm` are both `NULL` this does nothing 420 421 .seealso: `DMCreateSubDM()`, `DMGetLocalSection()`, `DMPlexSetMigrationSF()`, `DMView()` 422 @*/ 423 PetscErrorCode DMCreateSectionSubDM(DM dm, PetscInt numFields, const PetscInt fields[], const PetscInt numComps[], const PetscInt comps[], IS *is, DM *subdm) 424 { 425 PetscSection section, sectionGlobal; 426 PetscInt Nf; 427 428 PetscFunctionBegin; 429 if (!numFields) PetscFunctionReturn(PETSC_SUCCESS); 430 PetscCall(DMGetLocalSection(dm, §ion)); 431 PetscCall(DMGetGlobalSection(dm, §ionGlobal)); 432 PetscCheck(section, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Must set default section for DM before splitting fields"); 433 PetscCheck(sectionGlobal, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Must set default global section for DM before splitting fields"); 434 PetscCall(PetscSectionGetNumFields(section, &Nf)); 435 PetscCheck(numFields <= Nf, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Number of requested fields %" PetscInt_FMT " greater than number of DM fields %" PetscInt_FMT, numFields, Nf); 436 437 if (is) PetscCall(PetscSectionSelectFields_Private(section, sectionGlobal, numFields, fields, numComps, comps, is)); 438 if (subdm) PetscCall(DMSelectFields_Private(dm, section, numFields, fields, numComps, comps, is, subdm)); 439 PetscFunctionReturn(PETSC_SUCCESS); 440 } 441 442 /*@C 443 DMCreateSectionSuperDM - Returns an arrays of `IS` and a `DM` containing a `PetscSection` that encapsulates a superproblem defined by the array of `DM` and their `PetscSection` 444 445 Not Collective 446 447 Input Parameters: 448 + dms - The `DM` objects, the must all have the same topology; for example obtained with `DMClone()` 449 - len - The number of `DM` in `dms` 450 451 Output Parameters: 452 + is - The global indices for the subproblem, or `NULL` 453 - superdm - The `DM` for the superproblem, which must already have be cloned and contain the same topology as the `dms` 454 455 Level: intermediate 456 457 .seealso: `DMCreateSuperDM()`, `DMGetLocalSection()`, `DMPlexSetMigrationSF()`, `DMView()` 458 @*/ 459 PetscErrorCode DMCreateSectionSuperDM(DM dms[], PetscInt len, IS *is[], DM *superdm) 460 { 461 MPI_Comm comm; 462 PetscSection supersection, *sections, *sectionGlobals; 463 PetscInt *Nfs, Nf = 0, f, supf, oldf = -1, nullf = -1, i; 464 PetscBool haveNull = PETSC_FALSE; 465 466 PetscFunctionBegin; 467 PetscCall(PetscObjectGetComm((PetscObject)dms[0], &comm)); 468 /* Pull out local and global sections */ 469 PetscCall(PetscMalloc3(len, &Nfs, len, §ions, len, §ionGlobals)); 470 for (i = 0; i < len; ++i) { 471 PetscCall(DMGetLocalSection(dms[i], §ions[i])); 472 PetscCall(DMGetGlobalSection(dms[i], §ionGlobals[i])); 473 PetscCheck(sections[i], comm, PETSC_ERR_ARG_WRONG, "Must set default section for DM before splitting fields"); 474 PetscCheck(sectionGlobals[i], comm, PETSC_ERR_ARG_WRONG, "Must set default global section for DM before splitting fields"); 475 PetscCall(PetscSectionGetNumFields(sections[i], &Nfs[i])); 476 Nf += Nfs[i]; 477 } 478 /* Create the supersection */ 479 PetscCall(PetscSectionCreateSupersection(sections, len, &supersection)); 480 PetscCall(DMSetLocalSection(*superdm, supersection)); 481 /* Create ISes */ 482 if (is) { 483 PetscSection supersectionGlobal; 484 PetscInt bs = -1, startf = 0; 485 486 PetscCall(PetscMalloc1(len, is)); 487 PetscCall(DMGetGlobalSection(*superdm, &supersectionGlobal)); 488 for (i = 0; i < len; startf += Nfs[i], ++i) { 489 PetscInt *subIndices; 490 PetscInt subSize, subOff, pStart, pEnd, p, start, end, dummy; 491 492 PetscCall(PetscSectionGetChart(sectionGlobals[i], &pStart, &pEnd)); 493 PetscCall(PetscSectionGetConstrainedStorageSize(sectionGlobals[i], &subSize)); 494 PetscCall(PetscMalloc1(subSize, &subIndices)); 495 for (p = pStart, subOff = 0; p < pEnd; ++p) { 496 PetscInt gdof, gcdof, gtdof, d; 497 498 PetscCall(PetscSectionGetDof(sectionGlobals[i], p, &gdof)); 499 PetscCall(PetscSectionGetConstraintDof(sections[i], p, &gcdof)); 500 gtdof = gdof - gcdof; 501 if (gdof > 0 && gtdof) { 502 if (bs < 0) { 503 bs = gtdof; 504 } else if (bs != gtdof) { 505 bs = 1; 506 } 507 PetscCall(DMGetGlobalFieldOffset_Private(*superdm, p, startf, &start, &dummy)); 508 PetscCall(DMGetGlobalFieldOffset_Private(*superdm, p, startf + Nfs[i] - 1, &dummy, &end)); 509 PetscCheck(end - start == gtdof, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Invalid number of global dofs %" PetscInt_FMT " != %" PetscInt_FMT " for dm %" PetscInt_FMT " on point %" PetscInt_FMT, end - start, gtdof, i, p); 510 for (d = start; d < end; ++d, ++subOff) subIndices[subOff] = d; 511 } 512 } 513 PetscCall(ISCreateGeneral(comm, subSize, subIndices, PETSC_OWN_POINTER, &(*is)[i])); 514 /* Must have same blocksize on all procs (some might have no points) */ 515 { 516 PetscInt bs = -1, bsLocal[2], bsMinMax[2]; 517 518 bsLocal[0] = bs < 0 ? PETSC_INT_MAX : bs; 519 bsLocal[1] = bs; 520 PetscCall(PetscGlobalMinMaxInt(comm, bsLocal, bsMinMax)); 521 if (bsMinMax[0] != bsMinMax[1]) { 522 bs = 1; 523 } else { 524 bs = bsMinMax[0]; 525 } 526 PetscCall(ISSetBlockSize((*is)[i], bs)); 527 } 528 } 529 } 530 /* Preserve discretizations */ 531 if (len && dms[0]->probs) { 532 PetscCall(DMSetNumFields(*superdm, Nf)); 533 for (i = 0, supf = 0; i < len; ++i) { 534 for (f = 0; f < Nfs[i]; ++f, ++supf) { 535 PetscObject disc; 536 537 PetscCall(DMGetField(dms[i], f, NULL, &disc)); 538 PetscCall(DMSetField(*superdm, supf, NULL, disc)); 539 } 540 } 541 PetscCall(DMCreateDS(*superdm)); 542 } 543 // Create nullspace constructor slots 544 PetscCall(PetscFree2((*superdm)->nullspaceConstructors, (*superdm)->nearnullspaceConstructors)); 545 PetscCall(PetscCalloc2(Nf, &(*superdm)->nullspaceConstructors, Nf, &(*superdm)->nearnullspaceConstructors)); 546 /* Preserve nullspaces */ 547 for (i = 0, supf = 0; i < len; ++i) { 548 for (f = 0; f < Nfs[i]; ++f, ++supf) { 549 if (dms[i]->nullspaceConstructors) { 550 (*superdm)->nullspaceConstructors[supf] = dms[i]->nullspaceConstructors[f]; 551 if ((*superdm)->nullspaceConstructors[supf]) { 552 haveNull = PETSC_TRUE; 553 nullf = supf; 554 oldf = f; 555 } 556 } 557 } 558 } 559 /* Attach nullspace to IS */ 560 if (haveNull && is) { 561 MatNullSpace nullSpace; 562 563 PetscCall((*(*superdm)->nullspaceConstructors[nullf])(*superdm, oldf, nullf, &nullSpace)); 564 PetscCall(PetscObjectCompose((PetscObject)(*is)[nullf], "nullspace", (PetscObject)nullSpace)); 565 PetscCall(MatNullSpaceDestroy(&nullSpace)); 566 } 567 PetscCall(PetscSectionDestroy(&supersection)); 568 PetscCall(PetscFree3(Nfs, sections, sectionGlobals)); 569 PetscFunctionReturn(PETSC_SUCCESS); 570 } 571