1 /* TODOLIST 2 3 Solvers 4 - Add support for cholesky for coarse solver (similar to local solvers) 5 - Propagate ksp prefixes for solvers to mat objects? 6 7 User interface 8 - ** DM attached to pc? 9 10 Debugging output 11 - * Better management of verbosity levels of debugging output 12 13 Extra 14 - *** Is it possible to work with PCBDDCGraph on boundary indices only (less memory consumed)? 15 - BDDC with MG framework? 16 17 MATIS related operations contained in BDDC code 18 - Provide general case for subassembling 19 20 */ 21 22 #include <../src/ksp/pc/impls/bddc/bddc.h> /*I "petscpc.h" I*/ /* includes for fortran wrappers */ 23 #include <../src/ksp/pc/impls/bddc/bddcprivate.h> 24 #include <petscblaslapack.h> 25 26 static PetscBool cited = PETSC_FALSE; 27 static const char citation[] = 28 "@article{ZampiniPCBDDC,\n" 29 "author = {Stefano Zampini},\n" 30 "title = {{PCBDDC}: A Class of Robust Dual-Primal Methods in {PETS}c},\n" 31 "journal = {SIAM Journal on Scientific Computing},\n" 32 "volume = {38},\n" 33 "number = {5},\n" 34 "pages = {S282-S306},\n" 35 "year = {2016},\n" 36 "doi = {10.1137/15M1025785},\n" 37 "URL = {http://dx.doi.org/10.1137/15M1025785},\n" 38 "eprint = {http://dx.doi.org/10.1137/15M1025785}\n" 39 "}\n"; 40 41 /* temporarily declare it */ 42 PetscErrorCode PCApply_BDDC(PC,Vec,Vec); 43 44 PetscErrorCode PCSetFromOptions_BDDC(PetscOptionItems *PetscOptionsObject,PC pc) 45 { 46 PC_BDDC *pcbddc = (PC_BDDC*)pc->data; 47 PetscInt nt; 48 PetscErrorCode ierr; 49 50 PetscFunctionBegin; 51 ierr = PetscOptionsHead(PetscOptionsObject,"BDDC options");CHKERRQ(ierr); 52 /* Verbose debugging */ 53 ierr = PetscOptionsInt("-pc_bddc_check_level","Verbose output for PCBDDC (intended for debug)","none",pcbddc->dbg_flag,&pcbddc->dbg_flag,NULL);CHKERRQ(ierr); 54 /* Approximate solvers */ 55 ierr = PetscOptionsBool("-pc_bddc_dirichlet_approximate","Inform PCBDDC that we are using approximate Dirichlet solvers","none",pcbddc->NullSpace_corr[0],&pcbddc->NullSpace_corr[0],NULL);CHKERRQ(ierr); 56 ierr = PetscOptionsBool("-pc_bddc_dirichlet_approximate_scale","Inform PCBDDC that we need to scale the Dirichlet solve","none",pcbddc->NullSpace_corr[1],&pcbddc->NullSpace_corr[1],NULL);CHKERRQ(ierr); 57 ierr = PetscOptionsBool("-pc_bddc_neumann_approximate","Inform PCBDDC that we are using approximate Neumann solvers","none",pcbddc->NullSpace_corr[2],&pcbddc->NullSpace_corr[2],NULL);CHKERRQ(ierr); 58 ierr = PetscOptionsBool("-pc_bddc_neumann_approximate_scale","Inform PCBDDC that we need to scale the Neumann solve","none",pcbddc->NullSpace_corr[3],&pcbddc->NullSpace_corr[3],NULL);CHKERRQ(ierr); 59 /* Primal space customization */ 60 ierr = PetscOptionsBool("-pc_bddc_use_local_mat_graph","Use or not adjacency graph of local mat for interface analysis","none",pcbddc->use_local_adj,&pcbddc->use_local_adj,NULL);CHKERRQ(ierr); 61 ierr = PetscOptionsInt("-pc_bddc_graph_maxcount","Maximum number of shared subdomains for a connected component","none",pcbddc->graphmaxcount,&pcbddc->graphmaxcount,NULL);CHKERRQ(ierr); 62 ierr = PetscOptionsBool("-pc_bddc_corner_selection","Activates face-based corner selection","none",pcbddc->corner_selection,&pcbddc->corner_selection,NULL);CHKERRQ(ierr); 63 ierr = PetscOptionsBool("-pc_bddc_use_vertices","Use or not corner dofs in coarse space","none",pcbddc->use_vertices,&pcbddc->use_vertices,NULL);CHKERRQ(ierr); 64 ierr = PetscOptionsBool("-pc_bddc_use_edges","Use or not edge constraints in coarse space","none",pcbddc->use_edges,&pcbddc->use_edges,NULL);CHKERRQ(ierr); 65 ierr = PetscOptionsBool("-pc_bddc_use_faces","Use or not face constraints in coarse space","none",pcbddc->use_faces,&pcbddc->use_faces,NULL);CHKERRQ(ierr); 66 ierr = PetscOptionsInt("-pc_bddc_vertex_size","Connected components smaller or equal to vertex size will be considered as primal vertices","none",pcbddc->vertex_size,&pcbddc->vertex_size,NULL);CHKERRQ(ierr); 67 ierr = PetscOptionsBool("-pc_bddc_use_true_nnsp","Use near null space attached to the matrix without modifications","none",pcbddc->use_nnsp_true,&pcbddc->use_nnsp_true,NULL);CHKERRQ(ierr); 68 ierr = PetscOptionsBool("-pc_bddc_use_qr_single","Use QR factorization for single constraints on cc (QR is always used when multiple constraints are present)","none",pcbddc->use_qr_single,&pcbddc->use_qr_single,NULL);CHKERRQ(ierr); 69 /* Change of basis */ 70 ierr = PetscOptionsBool("-pc_bddc_use_change_of_basis","Use or not internal change of basis on local edge nodes","none",pcbddc->use_change_of_basis,&pcbddc->use_change_of_basis,NULL);CHKERRQ(ierr); 71 ierr = PetscOptionsBool("-pc_bddc_use_change_on_faces","Use or not internal change of basis on local face nodes","none",pcbddc->use_change_on_faces,&pcbddc->use_change_on_faces,NULL);CHKERRQ(ierr); 72 if (!pcbddc->use_change_of_basis) { 73 pcbddc->use_change_on_faces = PETSC_FALSE; 74 } 75 /* Switch between M_2 (default) and M_3 preconditioners (as defined by C. Dohrmann in the ref. article) */ 76 ierr = PetscOptionsBool("-pc_bddc_switch_static","Switch on static condensation ops around the interface preconditioner","none",pcbddc->switch_static,&pcbddc->switch_static,NULL);CHKERRQ(ierr); 77 ierr = PetscOptionsInt("-pc_bddc_coarse_eqs_per_proc","Number of equations per process for coarse problem redistribution (significant only at the coarsest level)","none",pcbddc->coarse_eqs_per_proc,&pcbddc->coarse_eqs_per_proc,NULL);CHKERRQ(ierr); 78 ierr = PetscOptionsInt("-pc_bddc_coarsening_ratio","Set coarsening ratio used in multilevel coarsening","none",pcbddc->coarsening_ratio,&pcbddc->coarsening_ratio,NULL);CHKERRQ(ierr); 79 ierr = PetscOptionsInt("-pc_bddc_levels","Set maximum number of levels for multilevel","none",pcbddc->max_levels,&pcbddc->max_levels,NULL);CHKERRQ(ierr); 80 ierr = PetscOptionsBool("-pc_bddc_use_coarse_estimates","Use estimated eigenvalues for coarse problem","none",pcbddc->use_coarse_estimates,&pcbddc->use_coarse_estimates,NULL);CHKERRQ(ierr); 81 ierr = PetscOptionsBool("-pc_bddc_use_deluxe_scaling","Use deluxe scaling for BDDC","none",pcbddc->use_deluxe_scaling,&pcbddc->use_deluxe_scaling,NULL);CHKERRQ(ierr); 82 ierr = PetscOptionsBool("-pc_bddc_schur_rebuild","Whether or not the interface graph for Schur principal minors has to be rebuilt (i.e. define the interface without any adjacency)","none",pcbddc->sub_schurs_rebuild,&pcbddc->sub_schurs_rebuild,NULL);CHKERRQ(ierr); 83 ierr = PetscOptionsInt("-pc_bddc_schur_layers","Number of dofs' layers for the computation of principal minors (i.e. -1 uses all dofs)","none",pcbddc->sub_schurs_layers,&pcbddc->sub_schurs_layers,NULL);CHKERRQ(ierr); 84 ierr = PetscOptionsBool("-pc_bddc_schur_use_useradj","Whether or not the CSR graph specified by the user should be used for computing successive layers (default is to use adj of local mat)","none",pcbddc->sub_schurs_use_useradj,&pcbddc->sub_schurs_use_useradj,NULL);CHKERRQ(ierr); 85 ierr = PetscOptionsBool("-pc_bddc_schur_exact","Whether or not to use the exact Schur complement instead of the reduced one (which excludes size 1 cc)","none",pcbddc->sub_schurs_exact_schur,&pcbddc->sub_schurs_exact_schur,NULL);CHKERRQ(ierr); 86 ierr = PetscOptionsBool("-pc_bddc_deluxe_zerorows","Zero rows and columns of deluxe operators associated with primal dofs","none",pcbddc->deluxe_zerorows,&pcbddc->deluxe_zerorows,NULL);CHKERRQ(ierr); 87 ierr = PetscOptionsBool("-pc_bddc_deluxe_singlemat","Collapse deluxe operators","none",pcbddc->deluxe_singlemat,&pcbddc->deluxe_singlemat,NULL);CHKERRQ(ierr); 88 ierr = PetscOptionsBool("-pc_bddc_adaptive_userdefined","Use user-defined constraints (should be attached via MatSetNearNullSpace to pmat) in addition to those adaptively generated","none",pcbddc->adaptive_userdefined,&pcbddc->adaptive_userdefined,NULL);CHKERRQ(ierr); 89 nt = 2; 90 ierr = PetscOptionsRealArray("-pc_bddc_adaptive_threshold","Thresholds to be used for adaptive selection of constraints","none",pcbddc->adaptive_threshold,&nt,NULL);CHKERRQ(ierr); 91 if (nt == 1) pcbddc->adaptive_threshold[1] = pcbddc->adaptive_threshold[0]; 92 ierr = PetscOptionsInt("-pc_bddc_adaptive_nmin","Minimum number of constraints per connected components","none",pcbddc->adaptive_nmin,&pcbddc->adaptive_nmin,NULL);CHKERRQ(ierr); 93 ierr = PetscOptionsInt("-pc_bddc_adaptive_nmax","Maximum number of constraints per connected components","none",pcbddc->adaptive_nmax,&pcbddc->adaptive_nmax,NULL);CHKERRQ(ierr); 94 ierr = PetscOptionsBool("-pc_bddc_symmetric","Symmetric computation of primal basis functions","none",pcbddc->symmetric_primal,&pcbddc->symmetric_primal,NULL);CHKERRQ(ierr); 95 ierr = PetscOptionsInt("-pc_bddc_coarse_adj","Number of processors where to map the coarse adjacency list","none",pcbddc->coarse_adj_red,&pcbddc->coarse_adj_red,NULL);CHKERRQ(ierr); 96 ierr = PetscOptionsBool("-pc_bddc_benign_trick","Apply the benign subspace trick to saddle point problems with discontinuous pressures","none",pcbddc->benign_saddle_point,&pcbddc->benign_saddle_point,NULL);CHKERRQ(ierr); 97 ierr = PetscOptionsBool("-pc_bddc_benign_change","Compute the pressure change of basis explicitly","none",pcbddc->benign_change_explicit,&pcbddc->benign_change_explicit,NULL);CHKERRQ(ierr); 98 ierr = PetscOptionsBool("-pc_bddc_benign_compute_correction","Compute the benign correction during PreSolve","none",pcbddc->benign_compute_correction,&pcbddc->benign_compute_correction,NULL);CHKERRQ(ierr); 99 ierr = PetscOptionsBool("-pc_bddc_nonetflux","Automatic computation of no-net-flux quadrature weights","none",pcbddc->compute_nonetflux,&pcbddc->compute_nonetflux,NULL);CHKERRQ(ierr); 100 ierr = PetscOptionsBool("-pc_bddc_detect_disconnected","Detects disconnected subdomains","none",pcbddc->detect_disconnected,&pcbddc->detect_disconnected,NULL);CHKERRQ(ierr); 101 ierr = PetscOptionsBool("-pc_bddc_eliminate_dirichlet","Whether or not we want to eliminate dirichlet dofs during presolve","none",pcbddc->eliminate_dirdofs,&pcbddc->eliminate_dirdofs,NULL);CHKERRQ(ierr); 102 ierr = PetscOptionsTail();CHKERRQ(ierr); 103 PetscFunctionReturn(0); 104 } 105 106 static PetscErrorCode PCView_BDDC(PC pc,PetscViewer viewer) 107 { 108 PC_BDDC *pcbddc = (PC_BDDC*)pc->data; 109 PC_IS *pcis = (PC_IS*)pc->data; 110 PetscErrorCode ierr; 111 PetscBool isascii; 112 PetscSubcomm subcomm; 113 PetscViewer subviewer; 114 115 PetscFunctionBegin; 116 ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&isascii);CHKERRQ(ierr); 117 /* ASCII viewer */ 118 if (isascii) { 119 PetscMPIInt color,rank,size; 120 PetscInt64 loc[7],gsum[6],gmax[6],gmin[6],totbenign; 121 PetscScalar interface_size; 122 PetscReal ratio1=0.,ratio2=0.; 123 Vec counter; 124 125 if (!pc->setupcalled) { 126 ierr = PetscViewerASCIIPrintf(viewer," Partial information available: preconditioner has not been setup yet\n");CHKERRQ(ierr); 127 } 128 ierr = PetscViewerASCIIPrintf(viewer," Use verbose output: %D\n",pcbddc->dbg_flag);CHKERRQ(ierr); 129 ierr = PetscViewerASCIIPrintf(viewer," Use user-defined CSR: %d\n",!!pcbddc->mat_graph->nvtxs_csr);CHKERRQ(ierr); 130 ierr = PetscViewerASCIIPrintf(viewer," Use local mat graph: %d\n",pcbddc->use_local_adj && !pcbddc->mat_graph->nvtxs_csr);CHKERRQ(ierr); 131 if (pcbddc->mat_graph->twodim) { 132 ierr = PetscViewerASCIIPrintf(viewer," Connectivity graph topological dimension: 2\n");CHKERRQ(ierr); 133 } else { 134 ierr = PetscViewerASCIIPrintf(viewer," Connectivity graph topological dimension: 3\n");CHKERRQ(ierr); 135 } 136 if (pcbddc->graphmaxcount != PETSC_MAX_INT) { 137 ierr = PetscViewerASCIIPrintf(viewer," Graph max count: %D\n",pcbddc->graphmaxcount);CHKERRQ(ierr); 138 } 139 ierr = PetscViewerASCIIPrintf(viewer," Use vertices: %d (vertex size %D)\n",pcbddc->use_vertices,pcbddc->vertex_size);CHKERRQ(ierr); 140 ierr = PetscViewerASCIIPrintf(viewer," Use edges: %d\n",pcbddc->use_edges);CHKERRQ(ierr); 141 ierr = PetscViewerASCIIPrintf(viewer," Use faces: %d\n",pcbddc->use_faces);CHKERRQ(ierr); 142 ierr = PetscViewerASCIIPrintf(viewer," Use true near null space: %d\n",pcbddc->use_nnsp_true);CHKERRQ(ierr); 143 ierr = PetscViewerASCIIPrintf(viewer," Use QR for single constraints on cc: %d\n",pcbddc->use_qr_single);CHKERRQ(ierr); 144 ierr = PetscViewerASCIIPrintf(viewer," Use change of basis on local edge nodes: %d\n",pcbddc->use_change_of_basis);CHKERRQ(ierr); 145 ierr = PetscViewerASCIIPrintf(viewer," Use change of basis on local face nodes: %d\n",pcbddc->use_change_on_faces);CHKERRQ(ierr); 146 ierr = PetscViewerASCIIPrintf(viewer," User defined change of basis matrix: %d\n",!!pcbddc->user_ChangeOfBasisMatrix);CHKERRQ(ierr); 147 ierr = PetscViewerASCIIPrintf(viewer," Has change of basis matrix: %d\n",!!pcbddc->ChangeOfBasisMatrix);CHKERRQ(ierr); 148 ierr = PetscViewerASCIIPrintf(viewer," Eliminate dirichlet boundary dofs: %d\n",pcbddc->eliminate_dirdofs);CHKERRQ(ierr); 149 ierr = PetscViewerASCIIPrintf(viewer," Switch on static condensation ops around the interface preconditioner: %d\n",pcbddc->switch_static);CHKERRQ(ierr); 150 ierr = PetscViewerASCIIPrintf(viewer," Use exact dirichlet trick: %d\n",pcbddc->use_exact_dirichlet_trick);CHKERRQ(ierr); 151 ierr = PetscViewerASCIIPrintf(viewer," Multilevel max levels: %D\n",pcbddc->max_levels);CHKERRQ(ierr); 152 ierr = PetscViewerASCIIPrintf(viewer," Multilevel coarsening ratio: %D\n",pcbddc->coarsening_ratio);CHKERRQ(ierr); 153 ierr = PetscViewerASCIIPrintf(viewer," Use estimated eigs for coarse problem: %d\n",pcbddc->use_coarse_estimates);CHKERRQ(ierr); 154 ierr = PetscViewerASCIIPrintf(viewer," Use deluxe scaling: %d\n",pcbddc->use_deluxe_scaling);CHKERRQ(ierr); 155 ierr = PetscViewerASCIIPrintf(viewer," Use deluxe zerorows: %d\n",pcbddc->deluxe_zerorows);CHKERRQ(ierr); 156 ierr = PetscViewerASCIIPrintf(viewer," Use deluxe singlemat: %d\n",pcbddc->deluxe_singlemat);CHKERRQ(ierr); 157 ierr = PetscViewerASCIIPrintf(viewer," Rebuild interface graph for Schur principal minors: %d\n",pcbddc->sub_schurs_rebuild);CHKERRQ(ierr); 158 ierr = PetscViewerASCIIPrintf(viewer," Number of dofs' layers for the computation of principal minors: %D\n",pcbddc->sub_schurs_layers);CHKERRQ(ierr); 159 ierr = PetscViewerASCIIPrintf(viewer," Use user CSR graph to compute successive layers: %d\n",pcbddc->sub_schurs_use_useradj);CHKERRQ(ierr); 160 if (pcbddc->adaptive_threshold[1] != pcbddc->adaptive_threshold[0]) { 161 ierr = PetscViewerASCIIPrintf(viewer," Adaptive constraint selection thresholds (active %d, userdefined %d): %g,%g\n",pcbddc->adaptive_selection,pcbddc->adaptive_userdefined,pcbddc->adaptive_threshold[0],pcbddc->adaptive_threshold[1]);CHKERRQ(ierr); 162 } else { 163 ierr = PetscViewerASCIIPrintf(viewer," Adaptive constraint selection threshold (active %d, userdefined %d): %g\n",pcbddc->adaptive_selection,pcbddc->adaptive_userdefined,pcbddc->adaptive_threshold[0]);CHKERRQ(ierr); 164 } 165 ierr = PetscViewerASCIIPrintf(viewer," Min constraints / connected component: %D\n",pcbddc->adaptive_nmin);CHKERRQ(ierr); 166 ierr = PetscViewerASCIIPrintf(viewer," Max constraints / connected component: %D\n",pcbddc->adaptive_nmax);CHKERRQ(ierr); 167 ierr = PetscViewerASCIIPrintf(viewer," Invert exact Schur complement for adaptive selection: %d\n",pcbddc->sub_schurs_exact_schur);CHKERRQ(ierr); 168 ierr = PetscViewerASCIIPrintf(viewer," Symmetric computation of primal basis functions: %d\n",pcbddc->symmetric_primal);CHKERRQ(ierr); 169 ierr = PetscViewerASCIIPrintf(viewer," Num. Procs. to map coarse adjacency list: %D\n",pcbddc->coarse_adj_red);CHKERRQ(ierr); 170 ierr = PetscViewerASCIIPrintf(viewer," Coarse eqs per proc (significant at the coarsest level): %D\n",pcbddc->coarse_eqs_per_proc);CHKERRQ(ierr); 171 ierr = PetscViewerASCIIPrintf(viewer," Detect disconnected: %d\n",pcbddc->detect_disconnected);CHKERRQ(ierr); 172 ierr = PetscViewerASCIIPrintf(viewer," Benign subspace trick: %d (change explicit %d)\n",pcbddc->benign_saddle_point,pcbddc->benign_change_explicit);CHKERRQ(ierr); 173 ierr = PetscViewerASCIIPrintf(viewer," Benign subspace trick is active: %d\n",pcbddc->benign_have_null);CHKERRQ(ierr); 174 ierr = PetscViewerASCIIPrintf(viewer," Algebraic computation of no-net-flux %d\n",pcbddc->compute_nonetflux);CHKERRQ(ierr); 175 if (!pc->setupcalled) PetscFunctionReturn(0); 176 177 /* compute interface size */ 178 ierr = VecSet(pcis->vec1_B,1.0);CHKERRQ(ierr); 179 ierr = MatCreateVecs(pc->pmat,&counter,0);CHKERRQ(ierr); 180 ierr = VecSet(counter,0.0);CHKERRQ(ierr); 181 ierr = VecScatterBegin(pcis->global_to_B,pcis->vec1_B,counter,INSERT_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 182 ierr = VecScatterEnd(pcis->global_to_B,pcis->vec1_B,counter,INSERT_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 183 ierr = VecSum(counter,&interface_size);CHKERRQ(ierr); 184 ierr = VecDestroy(&counter);CHKERRQ(ierr); 185 186 /* compute some statistics on the domain decomposition */ 187 gsum[0] = 1; 188 gsum[1] = gsum[2] = gsum[3] = gsum[4] = gsum[5] = 0; 189 loc[0] = !!pcis->n; 190 loc[1] = pcis->n - pcis->n_B; 191 loc[2] = pcis->n_B; 192 loc[3] = pcbddc->local_primal_size; 193 loc[4] = pcis->n; 194 loc[5] = pcbddc->n_local_subs > 0 ? pcbddc->n_local_subs : (pcis->n ? 1 : 0); 195 loc[6] = pcbddc->benign_n; 196 ierr = MPI_Reduce(loc,gsum,6,MPIU_INT64,MPI_SUM,0,PetscObjectComm((PetscObject)pc));CHKERRQ(ierr); 197 if (!loc[0]) loc[1] = loc[2] = loc[3] = loc[4] = loc[5] = -1; 198 ierr = MPI_Reduce(loc,gmax,6,MPIU_INT64,MPI_MAX,0,PetscObjectComm((PetscObject)pc));CHKERRQ(ierr); 199 if (!loc[0]) loc[1] = loc[2] = loc[3] = loc[4] = loc[5] = PETSC_MAX_INT; 200 ierr = MPI_Reduce(loc,gmin,6,MPIU_INT64,MPI_MIN,0,PetscObjectComm((PetscObject)pc));CHKERRQ(ierr); 201 ierr = MPI_Reduce(&loc[6],&totbenign,1,MPIU_INT64,MPI_SUM,0,PetscObjectComm((PetscObject)pc));CHKERRQ(ierr); 202 if (pcbddc->coarse_size) { 203 ratio1 = pc->pmat->rmap->N/(1.*pcbddc->coarse_size); 204 ratio2 = PetscRealPart(interface_size)/pcbddc->coarse_size; 205 } 206 ierr = PetscViewerASCIIPrintf(viewer," ********************************** STATISTICS AT LEVEL %d **********************************\n",pcbddc->current_level);CHKERRQ(ierr); 207 ierr = PetscViewerASCIIPrintf(viewer," Global dofs sizes: all %D interface %D coarse %D\n",pc->pmat->rmap->N,(PetscInt)PetscRealPart(interface_size),pcbddc->coarse_size);CHKERRQ(ierr); 208 ierr = PetscViewerASCIIPrintf(viewer," Coarsening ratios: all/coarse %D interface/coarse %D\n",(PetscInt)ratio1,(PetscInt)ratio2);CHKERRQ(ierr); 209 ierr = PetscViewerASCIIPrintf(viewer," Active processes : %D\n",(PetscInt)gsum[0]);CHKERRQ(ierr); 210 ierr = PetscViewerASCIIPrintf(viewer," Total subdomains : %D\n",(PetscInt)gsum[5]);CHKERRQ(ierr); 211 if (pcbddc->benign_have_null) { 212 ierr = PetscViewerASCIIPrintf(viewer," Benign subs : %D\n",(PetscInt)totbenign);CHKERRQ(ierr); 213 } 214 ierr = PetscViewerASCIIPrintf(viewer," Dofs type :\tMIN\tMAX\tMEAN\n");CHKERRQ(ierr); 215 ierr = PetscViewerASCIIPrintf(viewer," Interior dofs :\t%D\t%D\t%D\n",(PetscInt)gmin[1],(PetscInt)gmax[1],(PetscInt)(gsum[1]/gsum[0]));CHKERRQ(ierr); 216 ierr = PetscViewerASCIIPrintf(viewer," Interface dofs :\t%D\t%D\t%D\n",(PetscInt)gmin[2],(PetscInt)gmax[2],(PetscInt)(gsum[2]/gsum[0]));CHKERRQ(ierr); 217 ierr = PetscViewerASCIIPrintf(viewer," Primal dofs :\t%D\t%D\t%D\n",(PetscInt)gmin[3],(PetscInt)gmax[3],(PetscInt)(gsum[3]/gsum[0]));CHKERRQ(ierr); 218 ierr = PetscViewerASCIIPrintf(viewer," Local dofs :\t%D\t%D\t%D\n",(PetscInt)gmin[4],(PetscInt)gmax[4],(PetscInt)(gsum[4]/gsum[0]));CHKERRQ(ierr); 219 ierr = PetscViewerASCIIPrintf(viewer," Local subs :\t%D\t%D\n" ,(PetscInt)gmin[5],(PetscInt)gmax[5]);CHKERRQ(ierr); 220 ierr = PetscViewerASCIIPrintf(viewer," ********************************** COARSE PROBLEM DETAILS *********************************\n");CHKERRQ(ierr); 221 ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 222 223 /* the coarse problem can be handled by a different communicator */ 224 if (pcbddc->coarse_ksp) color = 1; 225 else color = 0; 226 ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)pc),&rank);CHKERRQ(ierr); 227 ierr = MPI_Comm_size(PetscObjectComm((PetscObject)pc),&size);CHKERRQ(ierr); 228 ierr = PetscSubcommCreate(PetscObjectComm((PetscObject)pc),&subcomm);CHKERRQ(ierr); 229 ierr = PetscSubcommSetNumber(subcomm,PetscMin(size,2));CHKERRQ(ierr); 230 ierr = PetscSubcommSetTypeGeneral(subcomm,color,rank);CHKERRQ(ierr); 231 ierr = PetscViewerGetSubViewer(viewer,PetscSubcommChild(subcomm),&subviewer);CHKERRQ(ierr); 232 if (color == 1) { 233 ierr = KSPView(pcbddc->coarse_ksp,subviewer);CHKERRQ(ierr); 234 ierr = PetscViewerFlush(subviewer);CHKERRQ(ierr); 235 } 236 ierr = PetscViewerRestoreSubViewer(viewer,PetscSubcommChild(subcomm),&subviewer);CHKERRQ(ierr); 237 ierr = PetscSubcommDestroy(&subcomm);CHKERRQ(ierr); 238 ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 239 } 240 PetscFunctionReturn(0); 241 } 242 243 static PetscErrorCode PCBDDCSetDiscreteGradient_BDDC(PC pc, Mat G, PetscInt order, PetscInt field, PetscBool global, PetscBool conforming) 244 { 245 PC_BDDC *pcbddc = (PC_BDDC*)pc->data; 246 PetscErrorCode ierr; 247 248 PetscFunctionBegin; 249 ierr = PetscObjectReference((PetscObject)G);CHKERRQ(ierr); 250 ierr = MatDestroy(&pcbddc->discretegradient);CHKERRQ(ierr); 251 pcbddc->discretegradient = G; 252 pcbddc->nedorder = order > 0 ? order : -order; 253 pcbddc->nedfield = field; 254 pcbddc->nedglobal = global; 255 pcbddc->conforming = conforming; 256 PetscFunctionReturn(0); 257 } 258 259 /*@ 260 PCBDDCSetDiscreteGradient - Sets the discrete gradient 261 262 Collective on PC 263 264 Input Parameters: 265 + pc - the preconditioning context 266 . G - the discrete gradient matrix (should be in AIJ format) 267 . order - the order of the Nedelec space (1 for the lowest order) 268 . field - the field id of the Nedelec dofs (not used if the fields have not been specified) 269 . global - the type of global ordering for the rows of G 270 - conforming - whether the mesh is conforming or not 271 272 Level: advanced 273 274 Notes: 275 The discrete gradient matrix G is used to analyze the subdomain edges, and it should not contain any zero entry. 276 For variable order spaces, the order should be set to zero. 277 If global is true, the rows of G should be given in global ordering for the whole dofs; 278 if false, the ordering should be global for the Nedelec field. 279 In the latter case, it should hold gid[i] < gid[j] iff geid[i] < geid[j], with gid the global orderding for all the dofs 280 and geid the one for the Nedelec field. 281 282 .seealso: PCBDDC,PCBDDCSetDofsSplitting(),PCBDDCSetDofsSplittingLocal() 283 @*/ 284 PetscErrorCode PCBDDCSetDiscreteGradient(PC pc, Mat G, PetscInt order, PetscInt field, PetscBool global, PetscBool conforming) 285 { 286 PetscErrorCode ierr; 287 288 PetscFunctionBegin; 289 PetscValidHeaderSpecific(pc,PC_CLASSID,1); 290 PetscValidHeaderSpecific(G,MAT_CLASSID,2); 291 PetscValidLogicalCollectiveInt(pc,order,3); 292 PetscValidLogicalCollectiveInt(pc,field,4); 293 PetscValidLogicalCollectiveBool(pc,global,5); 294 PetscValidLogicalCollectiveBool(pc,conforming,6); 295 PetscCheckSameComm(pc,1,G,2); 296 ierr = PetscTryMethod(pc,"PCBDDCSetDiscreteGradient_C",(PC,Mat,PetscInt,PetscInt,PetscBool,PetscBool),(pc,G,order,field,global,conforming));CHKERRQ(ierr); 297 PetscFunctionReturn(0); 298 } 299 300 static PetscErrorCode PCBDDCSetDivergenceMat_BDDC(PC pc, Mat divudotp, PetscBool trans, IS vl2l) 301 { 302 PC_BDDC *pcbddc = (PC_BDDC*)pc->data; 303 PetscErrorCode ierr; 304 305 PetscFunctionBegin; 306 ierr = PetscObjectReference((PetscObject)divudotp);CHKERRQ(ierr); 307 ierr = MatDestroy(&pcbddc->divudotp);CHKERRQ(ierr); 308 pcbddc->divudotp = divudotp; 309 pcbddc->divudotp_trans = trans; 310 pcbddc->compute_nonetflux = PETSC_TRUE; 311 if (vl2l) { 312 ierr = PetscObjectReference((PetscObject)vl2l);CHKERRQ(ierr); 313 ierr = ISDestroy(&pcbddc->divudotp_vl2l);CHKERRQ(ierr); 314 pcbddc->divudotp_vl2l = vl2l; 315 } 316 PetscFunctionReturn(0); 317 } 318 319 /*@ 320 PCBDDCSetDivergenceMat - Sets the linear operator representing \int_\Omega \div {\bf u} \cdot p dx 321 322 Collective on PC 323 324 Input Parameters: 325 + pc - the preconditioning context 326 . divudotp - the matrix (must be of type MATIS) 327 . trans - if trans if false (resp. true), then pressures are in the test (trial) space and velocities are in the trial (test) space. 328 - vl2l - optional index set describing the local (wrt the local matrix in divudotp) to local (wrt the local matrix in the preconditioning matrix) map for the velocities 329 330 Level: advanced 331 332 Notes: 333 This auxiliary matrix is used to compute quadrature weights representing the net-flux across subdomain boundaries 334 If vl2l is NULL, the local ordering for velocities in divudotp should match that of the preconditioning matrix 335 336 .seealso: PCBDDC 337 @*/ 338 PetscErrorCode PCBDDCSetDivergenceMat(PC pc, Mat divudotp, PetscBool trans, IS vl2l) 339 { 340 PetscBool ismatis; 341 PetscErrorCode ierr; 342 343 PetscFunctionBegin; 344 PetscValidHeaderSpecific(pc,PC_CLASSID,1); 345 PetscValidHeaderSpecific(divudotp,MAT_CLASSID,2); 346 PetscCheckSameComm(pc,1,divudotp,2); 347 PetscValidLogicalCollectiveBool(pc,trans,3); 348 if (vl2l) PetscValidHeaderSpecific(divudotp,IS_CLASSID,4); 349 ierr = PetscObjectTypeCompare((PetscObject)divudotp,MATIS,&ismatis);CHKERRQ(ierr); 350 if (!ismatis) SETERRQ(PetscObjectComm((PetscObject)pc),PETSC_ERR_ARG_WRONG,"Divergence matrix needs to be of type MATIS"); 351 ierr = PetscTryMethod(pc,"PCBDDCSetDivergenceMat_C",(PC,Mat,PetscBool,IS),(pc,divudotp,trans,vl2l));CHKERRQ(ierr); 352 PetscFunctionReturn(0); 353 } 354 355 static PetscErrorCode PCBDDCSetChangeOfBasisMat_BDDC(PC pc, Mat change, PetscBool interior) 356 { 357 PC_BDDC *pcbddc = (PC_BDDC*)pc->data; 358 PetscErrorCode ierr; 359 360 PetscFunctionBegin; 361 ierr = PetscObjectReference((PetscObject)change);CHKERRQ(ierr); 362 ierr = MatDestroy(&pcbddc->user_ChangeOfBasisMatrix);CHKERRQ(ierr); 363 pcbddc->user_ChangeOfBasisMatrix = change; 364 pcbddc->change_interior = interior; 365 PetscFunctionReturn(0); 366 } 367 /*@ 368 PCBDDCSetChangeOfBasisMat - Set user defined change of basis for dofs 369 370 Collective on PC 371 372 Input Parameters: 373 + pc - the preconditioning context 374 . change - the change of basis matrix 375 - interior - whether or not the change of basis modifies interior dofs 376 377 Level: intermediate 378 379 Notes: 380 381 .seealso: PCBDDC 382 @*/ 383 PetscErrorCode PCBDDCSetChangeOfBasisMat(PC pc, Mat change, PetscBool interior) 384 { 385 PetscErrorCode ierr; 386 387 PetscFunctionBegin; 388 PetscValidHeaderSpecific(pc,PC_CLASSID,1); 389 PetscValidHeaderSpecific(change,MAT_CLASSID,2); 390 PetscCheckSameComm(pc,1,change,2); 391 if (pc->mat) { 392 PetscInt rows_c,cols_c,rows,cols; 393 ierr = MatGetSize(pc->mat,&rows,&cols);CHKERRQ(ierr); 394 ierr = MatGetSize(change,&rows_c,&cols_c);CHKERRQ(ierr); 395 if (rows_c != rows) SETERRQ2(PetscObjectComm((PetscObject)pc),PETSC_ERR_SUP,"Invalid number of rows for change of basis matrix! %D != %D",rows_c,rows); 396 if (cols_c != cols) SETERRQ2(PetscObjectComm((PetscObject)pc),PETSC_ERR_SUP,"Invalid number of columns for change of basis matrix! %D != %D",cols_c,cols); 397 ierr = MatGetLocalSize(pc->mat,&rows,&cols);CHKERRQ(ierr); 398 ierr = MatGetLocalSize(change,&rows_c,&cols_c);CHKERRQ(ierr); 399 if (rows_c != rows) SETERRQ2(PetscObjectComm((PetscObject)pc),PETSC_ERR_SUP,"Invalid number of local rows for change of basis matrix! %D != %D",rows_c,rows); 400 if (cols_c != cols) SETERRQ2(PetscObjectComm((PetscObject)pc),PETSC_ERR_SUP,"Invalid number of local columns for change of basis matrix! %D != %D",cols_c,cols); 401 } 402 ierr = PetscTryMethod(pc,"PCBDDCSetChangeOfBasisMat_C",(PC,Mat,PetscBool),(pc,change,interior));CHKERRQ(ierr); 403 PetscFunctionReturn(0); 404 } 405 406 static PetscErrorCode PCBDDCSetPrimalVerticesIS_BDDC(PC pc, IS PrimalVertices) 407 { 408 PC_BDDC *pcbddc = (PC_BDDC*)pc->data; 409 PetscBool isequal = PETSC_FALSE; 410 PetscErrorCode ierr; 411 412 PetscFunctionBegin; 413 ierr = PetscObjectReference((PetscObject)PrimalVertices);CHKERRQ(ierr); 414 if (pcbddc->user_primal_vertices) { 415 ierr = ISEqual(PrimalVertices,pcbddc->user_primal_vertices,&isequal);CHKERRQ(ierr); 416 } 417 ierr = ISDestroy(&pcbddc->user_primal_vertices);CHKERRQ(ierr); 418 ierr = ISDestroy(&pcbddc->user_primal_vertices_local);CHKERRQ(ierr); 419 pcbddc->user_primal_vertices = PrimalVertices; 420 if (!isequal) pcbddc->recompute_topography = PETSC_TRUE; 421 PetscFunctionReturn(0); 422 } 423 424 /*@ 425 PCBDDCSetPrimalVerticesIS - Set additional user defined primal vertices in PCBDDC 426 427 Collective 428 429 Input Parameters: 430 + pc - the preconditioning context 431 - PrimalVertices - index set of primal vertices in global numbering (can be empty) 432 433 Level: intermediate 434 435 Notes: 436 Any process can list any global node 437 438 .seealso: PCBDDC 439 @*/ 440 PetscErrorCode PCBDDCSetPrimalVerticesIS(PC pc, IS PrimalVertices) 441 { 442 PetscErrorCode ierr; 443 444 PetscFunctionBegin; 445 PetscValidHeaderSpecific(pc,PC_CLASSID,1); 446 PetscValidHeaderSpecific(PrimalVertices,IS_CLASSID,2); 447 PetscCheckSameComm(pc,1,PrimalVertices,2); 448 ierr = PetscTryMethod(pc,"PCBDDCSetPrimalVerticesIS_C",(PC,IS),(pc,PrimalVertices));CHKERRQ(ierr); 449 PetscFunctionReturn(0); 450 } 451 452 static PetscErrorCode PCBDDCSetPrimalVerticesLocalIS_BDDC(PC pc, IS PrimalVertices) 453 { 454 PC_BDDC *pcbddc = (PC_BDDC*)pc->data; 455 PetscBool isequal = PETSC_FALSE; 456 PetscErrorCode ierr; 457 458 PetscFunctionBegin; 459 ierr = PetscObjectReference((PetscObject)PrimalVertices);CHKERRQ(ierr); 460 if (pcbddc->user_primal_vertices_local) { 461 ierr = ISEqual(PrimalVertices,pcbddc->user_primal_vertices_local,&isequal);CHKERRQ(ierr); 462 } 463 ierr = ISDestroy(&pcbddc->user_primal_vertices);CHKERRQ(ierr); 464 ierr = ISDestroy(&pcbddc->user_primal_vertices_local);CHKERRQ(ierr); 465 pcbddc->user_primal_vertices_local = PrimalVertices; 466 if (!isequal) pcbddc->recompute_topography = PETSC_TRUE; 467 PetscFunctionReturn(0); 468 } 469 /*@ 470 PCBDDCSetPrimalVerticesLocalIS - Set additional user defined primal vertices in PCBDDC 471 472 Collective 473 474 Input Parameters: 475 + pc - the preconditioning context 476 - PrimalVertices - index set of primal vertices in local numbering (can be empty) 477 478 Level: intermediate 479 480 Notes: 481 482 .seealso: PCBDDC 483 @*/ 484 PetscErrorCode PCBDDCSetPrimalVerticesLocalIS(PC pc, IS PrimalVertices) 485 { 486 PetscErrorCode ierr; 487 488 PetscFunctionBegin; 489 PetscValidHeaderSpecific(pc,PC_CLASSID,1); 490 PetscValidHeaderSpecific(PrimalVertices,IS_CLASSID,2); 491 PetscCheckSameComm(pc,1,PrimalVertices,2); 492 ierr = PetscTryMethod(pc,"PCBDDCSetPrimalVerticesLocalIS_C",(PC,IS),(pc,PrimalVertices));CHKERRQ(ierr); 493 PetscFunctionReturn(0); 494 } 495 496 static PetscErrorCode PCBDDCSetCoarseningRatio_BDDC(PC pc,PetscInt k) 497 { 498 PC_BDDC *pcbddc = (PC_BDDC*)pc->data; 499 500 PetscFunctionBegin; 501 pcbddc->coarsening_ratio = k; 502 PetscFunctionReturn(0); 503 } 504 505 /*@ 506 PCBDDCSetCoarseningRatio - Set coarsening ratio used in multilevel 507 508 Logically collective on PC 509 510 Input Parameters: 511 + pc - the preconditioning context 512 - k - coarsening ratio (H/h at the coarser level) 513 514 Options Database Keys: 515 . -pc_bddc_coarsening_ratio 516 517 Level: intermediate 518 519 Notes: 520 Approximatively k subdomains at the finer level will be aggregated into a single subdomain at the coarser level 521 522 .seealso: PCBDDC, PCBDDCSetLevels() 523 @*/ 524 PetscErrorCode PCBDDCSetCoarseningRatio(PC pc,PetscInt k) 525 { 526 PetscErrorCode ierr; 527 528 PetscFunctionBegin; 529 PetscValidHeaderSpecific(pc,PC_CLASSID,1); 530 PetscValidLogicalCollectiveInt(pc,k,2); 531 ierr = PetscTryMethod(pc,"PCBDDCSetCoarseningRatio_C",(PC,PetscInt),(pc,k));CHKERRQ(ierr); 532 PetscFunctionReturn(0); 533 } 534 535 /* The following functions (PCBDDCSetUseExactDirichlet PCBDDCSetLevel) are not public */ 536 static PetscErrorCode PCBDDCSetUseExactDirichlet_BDDC(PC pc,PetscBool flg) 537 { 538 PC_BDDC *pcbddc = (PC_BDDC*)pc->data; 539 540 PetscFunctionBegin; 541 pcbddc->use_exact_dirichlet_trick = flg; 542 PetscFunctionReturn(0); 543 } 544 545 PetscErrorCode PCBDDCSetUseExactDirichlet(PC pc,PetscBool flg) 546 { 547 PetscErrorCode ierr; 548 549 PetscFunctionBegin; 550 PetscValidHeaderSpecific(pc,PC_CLASSID,1); 551 PetscValidLogicalCollectiveBool(pc,flg,2); 552 ierr = PetscTryMethod(pc,"PCBDDCSetUseExactDirichlet_C",(PC,PetscBool),(pc,flg));CHKERRQ(ierr); 553 PetscFunctionReturn(0); 554 } 555 556 static PetscErrorCode PCBDDCSetLevel_BDDC(PC pc,PetscInt level) 557 { 558 PC_BDDC *pcbddc = (PC_BDDC*)pc->data; 559 560 PetscFunctionBegin; 561 pcbddc->current_level = level; 562 PetscFunctionReturn(0); 563 } 564 565 PetscErrorCode PCBDDCSetLevel(PC pc,PetscInt level) 566 { 567 PetscErrorCode ierr; 568 569 PetscFunctionBegin; 570 PetscValidHeaderSpecific(pc,PC_CLASSID,1); 571 PetscValidLogicalCollectiveInt(pc,level,2); 572 ierr = PetscTryMethod(pc,"PCBDDCSetLevel_C",(PC,PetscInt),(pc,level));CHKERRQ(ierr); 573 PetscFunctionReturn(0); 574 } 575 576 static PetscErrorCode PCBDDCSetLevels_BDDC(PC pc,PetscInt levels) 577 { 578 PC_BDDC *pcbddc = (PC_BDDC*)pc->data; 579 580 PetscFunctionBegin; 581 pcbddc->max_levels = levels; 582 PetscFunctionReturn(0); 583 } 584 585 /*@ 586 PCBDDCSetLevels - Sets the maximum number of levels for multilevel 587 588 Logically collective on PC 589 590 Input Parameters: 591 + pc - the preconditioning context 592 - levels - the maximum number of levels (max 9) 593 594 Options Database Keys: 595 . -pc_bddc_levels 596 597 Level: intermediate 598 599 Notes: 600 Default value is 0, i.e. traditional one-level BDDC 601 602 .seealso: PCBDDC, PCBDDCSetCoarseningRatio() 603 @*/ 604 PetscErrorCode PCBDDCSetLevels(PC pc,PetscInt levels) 605 { 606 PetscErrorCode ierr; 607 608 PetscFunctionBegin; 609 PetscValidHeaderSpecific(pc,PC_CLASSID,1); 610 PetscValidLogicalCollectiveInt(pc,levels,2); 611 if (levels > 99) SETERRQ(PetscObjectComm((PetscObject)pc),PETSC_ERR_SUP,"Maximum number of levels for bddc is 99\n"); 612 ierr = PetscTryMethod(pc,"PCBDDCSetLevels_C",(PC,PetscInt),(pc,levels));CHKERRQ(ierr); 613 PetscFunctionReturn(0); 614 } 615 616 static PetscErrorCode PCBDDCSetDirichletBoundaries_BDDC(PC pc,IS DirichletBoundaries) 617 { 618 PC_BDDC *pcbddc = (PC_BDDC*)pc->data; 619 PetscBool isequal = PETSC_FALSE; 620 PetscErrorCode ierr; 621 622 PetscFunctionBegin; 623 ierr = PetscObjectReference((PetscObject)DirichletBoundaries);CHKERRQ(ierr); 624 if (pcbddc->DirichletBoundaries) { 625 ierr = ISEqual(DirichletBoundaries,pcbddc->DirichletBoundaries,&isequal);CHKERRQ(ierr); 626 } 627 /* last user setting takes precendence -> destroy any other customization */ 628 ierr = ISDestroy(&pcbddc->DirichletBoundariesLocal);CHKERRQ(ierr); 629 ierr = ISDestroy(&pcbddc->DirichletBoundaries);CHKERRQ(ierr); 630 pcbddc->DirichletBoundaries = DirichletBoundaries; 631 if (!isequal) pcbddc->recompute_topography = PETSC_TRUE; 632 PetscFunctionReturn(0); 633 } 634 635 /*@ 636 PCBDDCSetDirichletBoundaries - Set IS defining Dirichlet boundaries for the global problem. 637 638 Collective 639 640 Input Parameters: 641 + pc - the preconditioning context 642 - DirichletBoundaries - parallel IS defining the Dirichlet boundaries 643 644 Level: intermediate 645 646 Notes: 647 Provide the information if you used MatZeroRows/Columns routines. Any process can list any global node 648 649 .seealso: PCBDDC, PCBDDCSetDirichletBoundariesLocal(), MatZeroRows(), MatZeroRowsColumns() 650 @*/ 651 PetscErrorCode PCBDDCSetDirichletBoundaries(PC pc,IS DirichletBoundaries) 652 { 653 PetscErrorCode ierr; 654 655 PetscFunctionBegin; 656 PetscValidHeaderSpecific(pc,PC_CLASSID,1); 657 PetscValidHeaderSpecific(DirichletBoundaries,IS_CLASSID,2); 658 PetscCheckSameComm(pc,1,DirichletBoundaries,2); 659 ierr = PetscTryMethod(pc,"PCBDDCSetDirichletBoundaries_C",(PC,IS),(pc,DirichletBoundaries));CHKERRQ(ierr); 660 PetscFunctionReturn(0); 661 } 662 663 static PetscErrorCode PCBDDCSetDirichletBoundariesLocal_BDDC(PC pc,IS DirichletBoundaries) 664 { 665 PC_BDDC *pcbddc = (PC_BDDC*)pc->data; 666 PetscBool isequal = PETSC_FALSE; 667 PetscErrorCode ierr; 668 669 PetscFunctionBegin; 670 ierr = PetscObjectReference((PetscObject)DirichletBoundaries);CHKERRQ(ierr); 671 if (pcbddc->DirichletBoundariesLocal) { 672 ierr = ISEqual(DirichletBoundaries,pcbddc->DirichletBoundariesLocal,&isequal);CHKERRQ(ierr); 673 } 674 /* last user setting takes precendence -> destroy any other customization */ 675 ierr = ISDestroy(&pcbddc->DirichletBoundariesLocal);CHKERRQ(ierr); 676 ierr = ISDestroy(&pcbddc->DirichletBoundaries);CHKERRQ(ierr); 677 pcbddc->DirichletBoundariesLocal = DirichletBoundaries; 678 if (!isequal) pcbddc->recompute_topography = PETSC_TRUE; 679 PetscFunctionReturn(0); 680 } 681 682 /*@ 683 PCBDDCSetDirichletBoundariesLocal - Set IS defining Dirichlet boundaries for the global problem in local ordering. 684 685 Collective 686 687 Input Parameters: 688 + pc - the preconditioning context 689 - DirichletBoundaries - parallel IS defining the Dirichlet boundaries (in local ordering) 690 691 Level: intermediate 692 693 Notes: 694 695 .seealso: PCBDDC, PCBDDCSetDirichletBoundaries(), MatZeroRows(), MatZeroRowsColumns() 696 @*/ 697 PetscErrorCode PCBDDCSetDirichletBoundariesLocal(PC pc,IS DirichletBoundaries) 698 { 699 PetscErrorCode ierr; 700 701 PetscFunctionBegin; 702 PetscValidHeaderSpecific(pc,PC_CLASSID,1); 703 PetscValidHeaderSpecific(DirichletBoundaries,IS_CLASSID,2); 704 PetscCheckSameComm(pc,1,DirichletBoundaries,2); 705 ierr = PetscTryMethod(pc,"PCBDDCSetDirichletBoundariesLocal_C",(PC,IS),(pc,DirichletBoundaries));CHKERRQ(ierr); 706 PetscFunctionReturn(0); 707 } 708 709 static PetscErrorCode PCBDDCSetNeumannBoundaries_BDDC(PC pc,IS NeumannBoundaries) 710 { 711 PC_BDDC *pcbddc = (PC_BDDC*)pc->data; 712 PetscBool isequal = PETSC_FALSE; 713 PetscErrorCode ierr; 714 715 PetscFunctionBegin; 716 ierr = PetscObjectReference((PetscObject)NeumannBoundaries);CHKERRQ(ierr); 717 if (pcbddc->NeumannBoundaries) { 718 ierr = ISEqual(NeumannBoundaries,pcbddc->NeumannBoundaries,&isequal);CHKERRQ(ierr); 719 } 720 /* last user setting takes precendence -> destroy any other customization */ 721 ierr = ISDestroy(&pcbddc->NeumannBoundariesLocal);CHKERRQ(ierr); 722 ierr = ISDestroy(&pcbddc->NeumannBoundaries);CHKERRQ(ierr); 723 pcbddc->NeumannBoundaries = NeumannBoundaries; 724 if (!isequal) pcbddc->recompute_topography = PETSC_TRUE; 725 PetscFunctionReturn(0); 726 } 727 728 /*@ 729 PCBDDCSetNeumannBoundaries - Set IS defining Neumann boundaries for the global problem. 730 731 Collective 732 733 Input Parameters: 734 + pc - the preconditioning context 735 - NeumannBoundaries - parallel IS defining the Neumann boundaries 736 737 Level: intermediate 738 739 Notes: 740 Any process can list any global node 741 742 .seealso: PCBDDC, PCBDDCSetNeumannBoundariesLocal() 743 @*/ 744 PetscErrorCode PCBDDCSetNeumannBoundaries(PC pc,IS NeumannBoundaries) 745 { 746 PetscErrorCode ierr; 747 748 PetscFunctionBegin; 749 PetscValidHeaderSpecific(pc,PC_CLASSID,1); 750 PetscValidHeaderSpecific(NeumannBoundaries,IS_CLASSID,2); 751 PetscCheckSameComm(pc,1,NeumannBoundaries,2); 752 ierr = PetscTryMethod(pc,"PCBDDCSetNeumannBoundaries_C",(PC,IS),(pc,NeumannBoundaries));CHKERRQ(ierr); 753 PetscFunctionReturn(0); 754 } 755 756 static PetscErrorCode PCBDDCSetNeumannBoundariesLocal_BDDC(PC pc,IS NeumannBoundaries) 757 { 758 PC_BDDC *pcbddc = (PC_BDDC*)pc->data; 759 PetscBool isequal = PETSC_FALSE; 760 PetscErrorCode ierr; 761 762 PetscFunctionBegin; 763 ierr = PetscObjectReference((PetscObject)NeumannBoundaries);CHKERRQ(ierr); 764 if (pcbddc->NeumannBoundariesLocal) { 765 ierr = ISEqual(NeumannBoundaries,pcbddc->NeumannBoundariesLocal,&isequal);CHKERRQ(ierr); 766 } 767 /* last user setting takes precendence -> destroy any other customization */ 768 ierr = ISDestroy(&pcbddc->NeumannBoundariesLocal);CHKERRQ(ierr); 769 ierr = ISDestroy(&pcbddc->NeumannBoundaries);CHKERRQ(ierr); 770 pcbddc->NeumannBoundariesLocal = NeumannBoundaries; 771 if (!isequal) pcbddc->recompute_topography = PETSC_TRUE; 772 PetscFunctionReturn(0); 773 } 774 775 /*@ 776 PCBDDCSetNeumannBoundariesLocal - Set IS defining Neumann boundaries for the global problem in local ordering. 777 778 Collective 779 780 Input Parameters: 781 + pc - the preconditioning context 782 - NeumannBoundaries - parallel IS defining the subdomain part of Neumann boundaries (in local ordering) 783 784 Level: intermediate 785 786 Notes: 787 788 .seealso: PCBDDC, PCBDDCSetNeumannBoundaries() 789 @*/ 790 PetscErrorCode PCBDDCSetNeumannBoundariesLocal(PC pc,IS NeumannBoundaries) 791 { 792 PetscErrorCode ierr; 793 794 PetscFunctionBegin; 795 PetscValidHeaderSpecific(pc,PC_CLASSID,1); 796 PetscValidHeaderSpecific(NeumannBoundaries,IS_CLASSID,2); 797 PetscCheckSameComm(pc,1,NeumannBoundaries,2); 798 ierr = PetscTryMethod(pc,"PCBDDCSetNeumannBoundariesLocal_C",(PC,IS),(pc,NeumannBoundaries));CHKERRQ(ierr); 799 PetscFunctionReturn(0); 800 } 801 802 static PetscErrorCode PCBDDCGetDirichletBoundaries_BDDC(PC pc,IS *DirichletBoundaries) 803 { 804 PC_BDDC *pcbddc = (PC_BDDC*)pc->data; 805 806 PetscFunctionBegin; 807 *DirichletBoundaries = pcbddc->DirichletBoundaries; 808 PetscFunctionReturn(0); 809 } 810 811 /*@ 812 PCBDDCGetDirichletBoundaries - Get parallel IS for Dirichlet boundaries 813 814 Collective 815 816 Input Parameters: 817 . pc - the preconditioning context 818 819 Output Parameters: 820 . DirichletBoundaries - index set defining the Dirichlet boundaries 821 822 Level: intermediate 823 824 Notes: 825 The IS returned (if any) is the same passed in earlier by the user with PCBDDCSetDirichletBoundaries 826 827 .seealso: PCBDDC 828 @*/ 829 PetscErrorCode PCBDDCGetDirichletBoundaries(PC pc,IS *DirichletBoundaries) 830 { 831 PetscErrorCode ierr; 832 833 PetscFunctionBegin; 834 PetscValidHeaderSpecific(pc,PC_CLASSID,1); 835 ierr = PetscUseMethod(pc,"PCBDDCGetDirichletBoundaries_C",(PC,IS*),(pc,DirichletBoundaries));CHKERRQ(ierr); 836 PetscFunctionReturn(0); 837 } 838 839 static PetscErrorCode PCBDDCGetDirichletBoundariesLocal_BDDC(PC pc,IS *DirichletBoundaries) 840 { 841 PC_BDDC *pcbddc = (PC_BDDC*)pc->data; 842 843 PetscFunctionBegin; 844 *DirichletBoundaries = pcbddc->DirichletBoundariesLocal; 845 PetscFunctionReturn(0); 846 } 847 848 /*@ 849 PCBDDCGetDirichletBoundariesLocal - Get parallel IS for Dirichlet boundaries (in local ordering) 850 851 Collective 852 853 Input Parameters: 854 . pc - the preconditioning context 855 856 Output Parameters: 857 . DirichletBoundaries - index set defining the subdomain part of Dirichlet boundaries 858 859 Level: intermediate 860 861 Notes: 862 The IS returned could be the same passed in earlier by the user (if provided with PCBDDCSetDirichletBoundariesLocal) or a global-to-local map of the global IS (if provided with PCBDDCSetDirichletBoundaries). 863 In the latter case, the IS will be available after PCSetUp. 864 865 .seealso: PCBDDC 866 @*/ 867 PetscErrorCode PCBDDCGetDirichletBoundariesLocal(PC pc,IS *DirichletBoundaries) 868 { 869 PetscErrorCode ierr; 870 871 PetscFunctionBegin; 872 PetscValidHeaderSpecific(pc,PC_CLASSID,1); 873 ierr = PetscUseMethod(pc,"PCBDDCGetDirichletBoundariesLocal_C",(PC,IS*),(pc,DirichletBoundaries));CHKERRQ(ierr); 874 PetscFunctionReturn(0); 875 } 876 877 static PetscErrorCode PCBDDCGetNeumannBoundaries_BDDC(PC pc,IS *NeumannBoundaries) 878 { 879 PC_BDDC *pcbddc = (PC_BDDC*)pc->data; 880 881 PetscFunctionBegin; 882 *NeumannBoundaries = pcbddc->NeumannBoundaries; 883 PetscFunctionReturn(0); 884 } 885 886 /*@ 887 PCBDDCGetNeumannBoundaries - Get parallel IS for Neumann boundaries 888 889 Collective 890 891 Input Parameters: 892 . pc - the preconditioning context 893 894 Output Parameters: 895 . NeumannBoundaries - index set defining the Neumann boundaries 896 897 Level: intermediate 898 899 Notes: 900 The IS returned (if any) is the same passed in earlier by the user with PCBDDCSetNeumannBoundaries 901 902 .seealso: PCBDDC 903 @*/ 904 PetscErrorCode PCBDDCGetNeumannBoundaries(PC pc,IS *NeumannBoundaries) 905 { 906 PetscErrorCode ierr; 907 908 PetscFunctionBegin; 909 PetscValidHeaderSpecific(pc,PC_CLASSID,1); 910 ierr = PetscUseMethod(pc,"PCBDDCGetNeumannBoundaries_C",(PC,IS*),(pc,NeumannBoundaries));CHKERRQ(ierr); 911 PetscFunctionReturn(0); 912 } 913 914 static PetscErrorCode PCBDDCGetNeumannBoundariesLocal_BDDC(PC pc,IS *NeumannBoundaries) 915 { 916 PC_BDDC *pcbddc = (PC_BDDC*)pc->data; 917 918 PetscFunctionBegin; 919 *NeumannBoundaries = pcbddc->NeumannBoundariesLocal; 920 PetscFunctionReturn(0); 921 } 922 923 /*@ 924 PCBDDCGetNeumannBoundariesLocal - Get parallel IS for Neumann boundaries (in local ordering) 925 926 Collective 927 928 Input Parameters: 929 . pc - the preconditioning context 930 931 Output Parameters: 932 . NeumannBoundaries - index set defining the subdomain part of Neumann boundaries 933 934 Level: intermediate 935 936 Notes: 937 The IS returned could be the same passed in earlier by the user (if provided with PCBDDCSetNeumannBoundariesLocal) or a global-to-local map of the global IS (if provided with PCBDDCSetNeumannBoundaries). 938 In the latter case, the IS will be available after PCSetUp. 939 940 .seealso: PCBDDC 941 @*/ 942 PetscErrorCode PCBDDCGetNeumannBoundariesLocal(PC pc,IS *NeumannBoundaries) 943 { 944 PetscErrorCode ierr; 945 946 PetscFunctionBegin; 947 PetscValidHeaderSpecific(pc,PC_CLASSID,1); 948 ierr = PetscUseMethod(pc,"PCBDDCGetNeumannBoundariesLocal_C",(PC,IS*),(pc,NeumannBoundaries));CHKERRQ(ierr); 949 PetscFunctionReturn(0); 950 } 951 952 static PetscErrorCode PCBDDCSetLocalAdjacencyGraph_BDDC(PC pc, PetscInt nvtxs,const PetscInt xadj[],const PetscInt adjncy[], PetscCopyMode copymode) 953 { 954 PC_BDDC *pcbddc = (PC_BDDC*)pc->data; 955 PCBDDCGraph mat_graph = pcbddc->mat_graph; 956 PetscBool same_data = PETSC_FALSE; 957 PetscErrorCode ierr; 958 959 PetscFunctionBegin; 960 if (!nvtxs) { 961 if (copymode == PETSC_OWN_POINTER) { 962 ierr = PetscFree(xadj);CHKERRQ(ierr); 963 ierr = PetscFree(adjncy);CHKERRQ(ierr); 964 } 965 ierr = PCBDDCGraphResetCSR(mat_graph);CHKERRQ(ierr); 966 PetscFunctionReturn(0); 967 } 968 if (mat_graph->nvtxs == nvtxs && mat_graph->freecsr) { /* we own the data */ 969 if (mat_graph->xadj == xadj && mat_graph->adjncy == adjncy) same_data = PETSC_TRUE; 970 if (!same_data && mat_graph->xadj[nvtxs] == xadj[nvtxs]) { 971 ierr = PetscMemcmp(xadj,mat_graph->xadj,(nvtxs+1)*sizeof(PetscInt),&same_data);CHKERRQ(ierr); 972 if (same_data) { 973 ierr = PetscMemcmp(adjncy,mat_graph->adjncy,xadj[nvtxs]*sizeof(PetscInt),&same_data);CHKERRQ(ierr); 974 } 975 } 976 } 977 if (!same_data) { 978 /* free old CSR */ 979 ierr = PCBDDCGraphResetCSR(mat_graph);CHKERRQ(ierr); 980 /* get CSR into graph structure */ 981 if (copymode == PETSC_COPY_VALUES) { 982 ierr = PetscMalloc1(nvtxs+1,&mat_graph->xadj);CHKERRQ(ierr); 983 ierr = PetscMalloc1(xadj[nvtxs],&mat_graph->adjncy);CHKERRQ(ierr); 984 ierr = PetscMemcpy(mat_graph->xadj,xadj,(nvtxs+1)*sizeof(PetscInt));CHKERRQ(ierr); 985 ierr = PetscMemcpy(mat_graph->adjncy,adjncy,xadj[nvtxs]*sizeof(PetscInt));CHKERRQ(ierr); 986 mat_graph->freecsr = PETSC_TRUE; 987 } else if (copymode == PETSC_OWN_POINTER) { 988 mat_graph->xadj = (PetscInt*)xadj; 989 mat_graph->adjncy = (PetscInt*)adjncy; 990 mat_graph->freecsr = PETSC_TRUE; 991 } else if (copymode == PETSC_USE_POINTER) { 992 mat_graph->xadj = (PetscInt*)xadj; 993 mat_graph->adjncy = (PetscInt*)adjncy; 994 mat_graph->freecsr = PETSC_FALSE; 995 } else SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"Unsupported copy mode %D",copymode); 996 mat_graph->nvtxs_csr = nvtxs; 997 pcbddc->recompute_topography = PETSC_TRUE; 998 } 999 PetscFunctionReturn(0); 1000 } 1001 1002 /*@ 1003 PCBDDCSetLocalAdjacencyGraph - Set adjacency structure (CSR graph) of the local degrees of freedom. 1004 1005 Not collective 1006 1007 Input Parameters: 1008 + pc - the preconditioning context. 1009 . nvtxs - number of local vertices of the graph (i.e., the number of local dofs). 1010 . xadj, adjncy - the connectivity of the dofs in CSR format. 1011 - copymode - supported modes are PETSC_COPY_VALUES, PETSC_USE_POINTER or PETSC_OWN_POINTER. 1012 1013 Level: intermediate 1014 1015 Notes: 1016 A dof is considered connected with all local dofs if xadj[dof+1]-xadj[dof] == 1 and adjncy[xadj[dof]] is negative. 1017 1018 .seealso: PCBDDC,PetscCopyMode 1019 @*/ 1020 PetscErrorCode PCBDDCSetLocalAdjacencyGraph(PC pc,PetscInt nvtxs,const PetscInt xadj[],const PetscInt adjncy[], PetscCopyMode copymode) 1021 { 1022 void (*f)(void) = 0; 1023 PetscErrorCode ierr; 1024 1025 PetscFunctionBegin; 1026 PetscValidHeaderSpecific(pc,PC_CLASSID,1); 1027 if (nvtxs) { 1028 PetscValidIntPointer(xadj,3); 1029 if (xadj[nvtxs]) PetscValidIntPointer(adjncy,4); 1030 } 1031 ierr = PetscTryMethod(pc,"PCBDDCSetLocalAdjacencyGraph_C",(PC,PetscInt,const PetscInt[],const PetscInt[],PetscCopyMode),(pc,nvtxs,xadj,adjncy,copymode));CHKERRQ(ierr); 1032 /* free arrays if PCBDDC is not the PC type */ 1033 ierr = PetscObjectQueryFunction((PetscObject)pc,"PCBDDCSetLocalAdjacencyGraph_C",&f);CHKERRQ(ierr); 1034 if (!f && copymode == PETSC_OWN_POINTER) { 1035 ierr = PetscFree(xadj);CHKERRQ(ierr); 1036 ierr = PetscFree(adjncy);CHKERRQ(ierr); 1037 } 1038 PetscFunctionReturn(0); 1039 } 1040 1041 static PetscErrorCode PCBDDCSetDofsSplittingLocal_BDDC(PC pc,PetscInt n_is, IS ISForDofs[]) 1042 { 1043 PC_BDDC *pcbddc = (PC_BDDC*)pc->data; 1044 PetscInt i; 1045 PetscBool isequal = PETSC_FALSE; 1046 PetscErrorCode ierr; 1047 1048 PetscFunctionBegin; 1049 if (pcbddc->n_ISForDofsLocal == n_is) { 1050 for (i=0;i<n_is;i++) { 1051 PetscBool isequalt; 1052 ierr = ISEqual(ISForDofs[i],pcbddc->ISForDofsLocal[i],&isequalt);CHKERRQ(ierr); 1053 if (!isequalt) break; 1054 } 1055 if (i == n_is) isequal = PETSC_TRUE; 1056 } 1057 for (i=0;i<n_is;i++) { 1058 ierr = PetscObjectReference((PetscObject)ISForDofs[i]);CHKERRQ(ierr); 1059 } 1060 /* Destroy ISes if they were already set */ 1061 for (i=0;i<pcbddc->n_ISForDofsLocal;i++) { 1062 ierr = ISDestroy(&pcbddc->ISForDofsLocal[i]);CHKERRQ(ierr); 1063 } 1064 ierr = PetscFree(pcbddc->ISForDofsLocal);CHKERRQ(ierr); 1065 /* last user setting takes precendence -> destroy any other customization */ 1066 for (i=0;i<pcbddc->n_ISForDofs;i++) { 1067 ierr = ISDestroy(&pcbddc->ISForDofs[i]);CHKERRQ(ierr); 1068 } 1069 ierr = PetscFree(pcbddc->ISForDofs);CHKERRQ(ierr); 1070 pcbddc->n_ISForDofs = 0; 1071 /* allocate space then set */ 1072 if (n_is) { 1073 ierr = PetscMalloc1(n_is,&pcbddc->ISForDofsLocal);CHKERRQ(ierr); 1074 } 1075 for (i=0;i<n_is;i++) { 1076 pcbddc->ISForDofsLocal[i] = ISForDofs[i]; 1077 } 1078 pcbddc->n_ISForDofsLocal = n_is; 1079 if (n_is) pcbddc->user_provided_isfordofs = PETSC_TRUE; 1080 if (!isequal) pcbddc->recompute_topography = PETSC_TRUE; 1081 PetscFunctionReturn(0); 1082 } 1083 1084 /*@ 1085 PCBDDCSetDofsSplittingLocal - Set index sets defining fields of the local subdomain matrix 1086 1087 Collective 1088 1089 Input Parameters: 1090 + pc - the preconditioning context 1091 . n_is - number of index sets defining the fields 1092 - ISForDofs - array of IS describing the fields in local ordering 1093 1094 Level: intermediate 1095 1096 Notes: 1097 n_is should be the same among processes. Not all nodes need to be listed: unlisted nodes will belong to the complement field. 1098 1099 .seealso: PCBDDC 1100 @*/ 1101 PetscErrorCode PCBDDCSetDofsSplittingLocal(PC pc,PetscInt n_is, IS ISForDofs[]) 1102 { 1103 PetscInt i; 1104 PetscErrorCode ierr; 1105 1106 PetscFunctionBegin; 1107 PetscValidHeaderSpecific(pc,PC_CLASSID,1); 1108 PetscValidLogicalCollectiveInt(pc,n_is,2); 1109 for (i=0;i<n_is;i++) { 1110 PetscCheckSameComm(pc,1,ISForDofs[i],3); 1111 PetscValidHeaderSpecific(ISForDofs[i],IS_CLASSID,3); 1112 } 1113 ierr = PetscTryMethod(pc,"PCBDDCSetDofsSplittingLocal_C",(PC,PetscInt,IS[]),(pc,n_is,ISForDofs));CHKERRQ(ierr); 1114 PetscFunctionReturn(0); 1115 } 1116 1117 static PetscErrorCode PCBDDCSetDofsSplitting_BDDC(PC pc,PetscInt n_is, IS ISForDofs[]) 1118 { 1119 PC_BDDC *pcbddc = (PC_BDDC*)pc->data; 1120 PetscInt i; 1121 PetscBool isequal = PETSC_FALSE; 1122 PetscErrorCode ierr; 1123 1124 PetscFunctionBegin; 1125 if (pcbddc->n_ISForDofs == n_is) { 1126 for (i=0;i<n_is;i++) { 1127 PetscBool isequalt; 1128 ierr = ISEqual(ISForDofs[i],pcbddc->ISForDofs[i],&isequalt);CHKERRQ(ierr); 1129 if (!isequalt) break; 1130 } 1131 if (i == n_is) isequal = PETSC_TRUE; 1132 } 1133 for (i=0;i<n_is;i++) { 1134 ierr = PetscObjectReference((PetscObject)ISForDofs[i]);CHKERRQ(ierr); 1135 } 1136 /* Destroy ISes if they were already set */ 1137 for (i=0;i<pcbddc->n_ISForDofs;i++) { 1138 ierr = ISDestroy(&pcbddc->ISForDofs[i]);CHKERRQ(ierr); 1139 } 1140 ierr = PetscFree(pcbddc->ISForDofs);CHKERRQ(ierr); 1141 /* last user setting takes precendence -> destroy any other customization */ 1142 for (i=0;i<pcbddc->n_ISForDofsLocal;i++) { 1143 ierr = ISDestroy(&pcbddc->ISForDofsLocal[i]);CHKERRQ(ierr); 1144 } 1145 ierr = PetscFree(pcbddc->ISForDofsLocal);CHKERRQ(ierr); 1146 pcbddc->n_ISForDofsLocal = 0; 1147 /* allocate space then set */ 1148 if (n_is) { 1149 ierr = PetscMalloc1(n_is,&pcbddc->ISForDofs);CHKERRQ(ierr); 1150 } 1151 for (i=0;i<n_is;i++) { 1152 pcbddc->ISForDofs[i] = ISForDofs[i]; 1153 } 1154 pcbddc->n_ISForDofs = n_is; 1155 if (n_is) pcbddc->user_provided_isfordofs = PETSC_TRUE; 1156 if (!isequal) pcbddc->recompute_topography = PETSC_TRUE; 1157 PetscFunctionReturn(0); 1158 } 1159 1160 /*@ 1161 PCBDDCSetDofsSplitting - Set index sets defining fields of the global matrix 1162 1163 Collective 1164 1165 Input Parameters: 1166 + pc - the preconditioning context 1167 . n_is - number of index sets defining the fields 1168 - ISForDofs - array of IS describing the fields in global ordering 1169 1170 Level: intermediate 1171 1172 Notes: 1173 Any process can list any global node. Not all nodes need to be listed: unlisted nodes will belong to the complement field. 1174 1175 .seealso: PCBDDC 1176 @*/ 1177 PetscErrorCode PCBDDCSetDofsSplitting(PC pc,PetscInt n_is, IS ISForDofs[]) 1178 { 1179 PetscInt i; 1180 PetscErrorCode ierr; 1181 1182 PetscFunctionBegin; 1183 PetscValidHeaderSpecific(pc,PC_CLASSID,1); 1184 PetscValidLogicalCollectiveInt(pc,n_is,2); 1185 for (i=0;i<n_is;i++) { 1186 PetscValidHeaderSpecific(ISForDofs[i],IS_CLASSID,3); 1187 PetscCheckSameComm(pc,1,ISForDofs[i],3); 1188 } 1189 ierr = PetscTryMethod(pc,"PCBDDCSetDofsSplitting_C",(PC,PetscInt,IS[]),(pc,n_is,ISForDofs));CHKERRQ(ierr); 1190 PetscFunctionReturn(0); 1191 } 1192 1193 /* 1194 PCPreSolve_BDDC - Changes the right hand side and (if necessary) the initial 1195 guess if a transformation of basis approach has been selected. 1196 1197 Input Parameter: 1198 + pc - the preconditioner contex 1199 1200 Application Interface Routine: PCPreSolve() 1201 1202 Notes: 1203 The interface routine PCPreSolve() is not usually called directly by 1204 the user, but instead is called by KSPSolve(). 1205 */ 1206 static PetscErrorCode PCPreSolve_BDDC(PC pc, KSP ksp, Vec rhs, Vec x) 1207 { 1208 PetscErrorCode ierr; 1209 PC_BDDC *pcbddc = (PC_BDDC*)pc->data; 1210 PC_IS *pcis = (PC_IS*)(pc->data); 1211 Vec used_vec; 1212 PetscBool save_rhs = PETSC_TRUE, benign_correction_computed; 1213 1214 PetscFunctionBegin; 1215 /* if we are working with CG, one dirichlet solve can be avoided during Krylov iterations */ 1216 if (ksp) { 1217 PetscBool iscg, isgroppcg, ispipecg, ispipecgrr; 1218 ierr = PetscObjectTypeCompare((PetscObject)ksp,KSPCG,&iscg);CHKERRQ(ierr); 1219 ierr = PetscObjectTypeCompare((PetscObject)ksp,KSPGROPPCG,&isgroppcg);CHKERRQ(ierr); 1220 ierr = PetscObjectTypeCompare((PetscObject)ksp,KSPPIPECG,&ispipecg);CHKERRQ(ierr); 1221 ierr = PetscObjectTypeCompare((PetscObject)ksp,KSPPIPECGRR,&ispipecgrr);CHKERRQ(ierr); 1222 if (pcbddc->benign_apply_coarse_only || pcbddc->switch_static || (!iscg && !isgroppcg && !ispipecg && !ispipecgrr)) { 1223 ierr = PCBDDCSetUseExactDirichlet(pc,PETSC_FALSE);CHKERRQ(ierr); 1224 } 1225 } 1226 if (pcbddc->benign_apply_coarse_only || pcbddc->switch_static) { 1227 ierr = PCBDDCSetUseExactDirichlet(pc,PETSC_FALSE);CHKERRQ(ierr); 1228 } 1229 1230 /* Creates parallel work vectors used in presolve */ 1231 if (!pcbddc->original_rhs) { 1232 ierr = VecDuplicate(pcis->vec1_global,&pcbddc->original_rhs);CHKERRQ(ierr); 1233 } 1234 if (!pcbddc->temp_solution) { 1235 ierr = VecDuplicate(pcis->vec1_global,&pcbddc->temp_solution);CHKERRQ(ierr); 1236 } 1237 1238 pcbddc->temp_solution_used = PETSC_FALSE; 1239 if (x) { 1240 ierr = PetscObjectReference((PetscObject)x);CHKERRQ(ierr); 1241 used_vec = x; 1242 } else { /* it can only happen when calling PCBDDCMatFETIDPGetRHS */ 1243 ierr = PetscObjectReference((PetscObject)pcbddc->temp_solution);CHKERRQ(ierr); 1244 used_vec = pcbddc->temp_solution; 1245 ierr = VecSet(used_vec,0.0);CHKERRQ(ierr); 1246 pcbddc->temp_solution_used = PETSC_TRUE; 1247 ierr = VecCopy(rhs,pcbddc->original_rhs);CHKERRQ(ierr); 1248 save_rhs = PETSC_FALSE; 1249 pcbddc->eliminate_dirdofs = PETSC_TRUE; 1250 } 1251 1252 /* hack into ksp data structure since PCPreSolve comes earlier than setting to zero the guess in src/ksp/ksp/interface/itfunc.c */ 1253 if (ksp) { 1254 /* store the flag for the initial guess since it will be restored back during PCPostSolve_BDDC */ 1255 ierr = KSPGetInitialGuessNonzero(ksp,&pcbddc->ksp_guess_nonzero);CHKERRQ(ierr); 1256 if (!pcbddc->ksp_guess_nonzero) { 1257 ierr = VecSet(used_vec,0.0);CHKERRQ(ierr); 1258 } 1259 } 1260 1261 pcbddc->rhs_change = PETSC_FALSE; 1262 /* Take into account zeroed rows -> change rhs and store solution removed */ 1263 if (rhs && pcbddc->eliminate_dirdofs) { 1264 IS dirIS = NULL; 1265 1266 /* DirichletBoundariesLocal may not be consistent among neighbours; gets a dirichlet dofs IS from graph (may be cached) */ 1267 ierr = PCBDDCGraphGetDirichletDofs(pcbddc->mat_graph,&dirIS);CHKERRQ(ierr); 1268 if (dirIS) { 1269 Mat_IS *matis = (Mat_IS*)pc->pmat->data; 1270 PetscInt dirsize,i,*is_indices; 1271 PetscScalar *array_x; 1272 const PetscScalar *array_diagonal; 1273 1274 ierr = MatGetDiagonal(pc->pmat,pcis->vec1_global);CHKERRQ(ierr); 1275 ierr = VecPointwiseDivide(pcis->vec1_global,rhs,pcis->vec1_global);CHKERRQ(ierr); 1276 ierr = VecScatterBegin(matis->rctx,pcis->vec1_global,pcis->vec2_N,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1277 ierr = VecScatterEnd(matis->rctx,pcis->vec1_global,pcis->vec2_N,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1278 ierr = VecScatterBegin(matis->rctx,used_vec,pcis->vec1_N,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1279 ierr = VecScatterEnd(matis->rctx,used_vec,pcis->vec1_N,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1280 ierr = ISGetLocalSize(dirIS,&dirsize);CHKERRQ(ierr); 1281 ierr = VecGetArray(pcis->vec1_N,&array_x);CHKERRQ(ierr); 1282 ierr = VecGetArrayRead(pcis->vec2_N,&array_diagonal);CHKERRQ(ierr); 1283 ierr = ISGetIndices(dirIS,(const PetscInt**)&is_indices);CHKERRQ(ierr); 1284 for (i=0; i<dirsize; i++) array_x[is_indices[i]] = array_diagonal[is_indices[i]]; 1285 ierr = ISRestoreIndices(dirIS,(const PetscInt**)&is_indices);CHKERRQ(ierr); 1286 ierr = VecRestoreArrayRead(pcis->vec2_N,&array_diagonal);CHKERRQ(ierr); 1287 ierr = VecRestoreArray(pcis->vec1_N,&array_x);CHKERRQ(ierr); 1288 ierr = VecScatterBegin(matis->rctx,pcis->vec1_N,used_vec,INSERT_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 1289 ierr = VecScatterEnd(matis->rctx,pcis->vec1_N,used_vec,INSERT_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 1290 pcbddc->rhs_change = PETSC_TRUE; 1291 ierr = ISDestroy(&dirIS);CHKERRQ(ierr); 1292 } 1293 } 1294 1295 /* remove the computed solution or the initial guess from the rhs */ 1296 if (pcbddc->rhs_change || (ksp && pcbddc->ksp_guess_nonzero) ) { 1297 /* save the original rhs */ 1298 if (save_rhs) { 1299 ierr = VecSwap(rhs,pcbddc->original_rhs);CHKERRQ(ierr); 1300 save_rhs = PETSC_FALSE; 1301 } 1302 pcbddc->rhs_change = PETSC_TRUE; 1303 ierr = VecScale(used_vec,-1.0);CHKERRQ(ierr); 1304 ierr = MatMultAdd(pc->mat,used_vec,pcbddc->original_rhs,rhs);CHKERRQ(ierr); 1305 ierr = VecScale(used_vec,-1.0);CHKERRQ(ierr); 1306 ierr = VecCopy(used_vec,pcbddc->temp_solution);CHKERRQ(ierr); 1307 pcbddc->temp_solution_used = PETSC_TRUE; 1308 if (ksp) { 1309 ierr = KSPSetInitialGuessNonzero(ksp,PETSC_FALSE);CHKERRQ(ierr); 1310 } 1311 } 1312 ierr = VecDestroy(&used_vec);CHKERRQ(ierr); 1313 1314 /* compute initial vector in benign space if needed 1315 and remove non-benign solution from the rhs */ 1316 benign_correction_computed = PETSC_FALSE; 1317 if (rhs && pcbddc->benign_compute_correction && pcbddc->benign_have_null) { 1318 /* compute u^*_h using ideas similar to those in Xuemin Tu's PhD thesis (see Section 4.8.1) 1319 Recursively apply BDDC in the multilevel case */ 1320 if (!pcbddc->benign_vec) { 1321 ierr = VecDuplicate(rhs,&pcbddc->benign_vec);CHKERRQ(ierr); 1322 } 1323 pcbddc->benign_apply_coarse_only = PETSC_TRUE; 1324 if (!pcbddc->benign_skip_correction) { 1325 ierr = PCApply_BDDC(pc,rhs,pcbddc->benign_vec);CHKERRQ(ierr); 1326 benign_correction_computed = PETSC_TRUE; 1327 if (pcbddc->temp_solution_used) { 1328 ierr = VecAXPY(pcbddc->temp_solution,1.0,pcbddc->benign_vec);CHKERRQ(ierr); 1329 } 1330 ierr = VecScale(pcbddc->benign_vec,-1.0);CHKERRQ(ierr); 1331 /* store the original rhs if not done earlier */ 1332 if (save_rhs) { 1333 ierr = VecSwap(rhs,pcbddc->original_rhs);CHKERRQ(ierr); 1334 } 1335 if (pcbddc->rhs_change) { 1336 ierr = MatMultAdd(pc->mat,pcbddc->benign_vec,rhs,rhs);CHKERRQ(ierr); 1337 } else { 1338 ierr = MatMultAdd(pc->mat,pcbddc->benign_vec,pcbddc->original_rhs,rhs);CHKERRQ(ierr); 1339 } 1340 pcbddc->rhs_change = PETSC_TRUE; 1341 } 1342 pcbddc->benign_apply_coarse_only = PETSC_FALSE; 1343 } 1344 1345 /* dbg output */ 1346 if (pcbddc->dbg_flag && benign_correction_computed) { 1347 Vec v; 1348 ierr = VecDuplicate(pcis->vec1_global,&v);CHKERRQ(ierr); 1349 ierr = MatMultTranspose(pcbddc->ChangeOfBasisMatrix,rhs,v);CHKERRQ(ierr); 1350 ierr = PCBDDCBenignGetOrSetP0(pc,v,PETSC_TRUE);CHKERRQ(ierr); 1351 ierr = PetscViewerASCIIPrintf(pcbddc->dbg_viewer,"LEVEL %D: is the correction benign?\n",pcbddc->current_level);CHKERRQ(ierr); 1352 ierr = PetscScalarView(pcbddc->benign_n,pcbddc->benign_p0,PETSC_VIEWER_STDOUT_(PetscObjectComm((PetscObject)pc)));CHKERRQ(ierr); 1353 ierr = VecDestroy(&v);CHKERRQ(ierr); 1354 } 1355 1356 /* set initial guess if using PCG */ 1357 pcbddc->exact_dirichlet_trick_app = PETSC_FALSE; 1358 if (x && pcbddc->use_exact_dirichlet_trick) { 1359 ierr = VecSet(x,0.0);CHKERRQ(ierr); 1360 if (pcbddc->ChangeOfBasisMatrix && pcbddc->change_interior) { 1361 if (benign_correction_computed) { /* we have already saved the changed rhs */ 1362 ierr = VecLockPop(pcis->vec1_global);CHKERRQ(ierr); 1363 } else { 1364 ierr = MatMultTranspose(pcbddc->ChangeOfBasisMatrix,rhs,pcis->vec1_global);CHKERRQ(ierr); 1365 } 1366 ierr = VecScatterBegin(pcis->global_to_D,pcis->vec1_global,pcis->vec1_D,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1367 ierr = VecScatterEnd(pcis->global_to_D,pcis->vec1_global,pcis->vec1_D,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1368 } else { 1369 ierr = VecScatterBegin(pcis->global_to_D,rhs,pcis->vec1_D,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1370 ierr = VecScatterEnd(pcis->global_to_D,rhs,pcis->vec1_D,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1371 } 1372 ierr = KSPSolve(pcbddc->ksp_D,pcis->vec1_D,pcis->vec2_D);CHKERRQ(ierr); 1373 if (pcbddc->ChangeOfBasisMatrix && pcbddc->change_interior) { 1374 ierr = VecSet(pcis->vec1_global,0.);CHKERRQ(ierr); 1375 ierr = VecScatterBegin(pcis->global_to_D,pcis->vec2_D,pcis->vec1_global,INSERT_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 1376 ierr = VecScatterEnd(pcis->global_to_D,pcis->vec2_D,pcis->vec1_global,INSERT_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 1377 ierr = MatMult(pcbddc->ChangeOfBasisMatrix,pcis->vec1_global,x);CHKERRQ(ierr); 1378 } else { 1379 ierr = VecScatterBegin(pcis->global_to_D,pcis->vec2_D,x,INSERT_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 1380 ierr = VecScatterEnd(pcis->global_to_D,pcis->vec2_D,x,INSERT_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 1381 } 1382 if (ksp) { 1383 ierr = KSPSetInitialGuessNonzero(ksp,PETSC_TRUE);CHKERRQ(ierr); 1384 } 1385 pcbddc->exact_dirichlet_trick_app = PETSC_TRUE; 1386 } else if (pcbddc->ChangeOfBasisMatrix && pcbddc->change_interior && benign_correction_computed && pcbddc->use_exact_dirichlet_trick) { 1387 ierr = VecLockPop(pcis->vec1_global);CHKERRQ(ierr); 1388 } 1389 PetscFunctionReturn(0); 1390 } 1391 1392 /* 1393 PCPostSolve_BDDC - Changes the computed solution if a transformation of basis 1394 approach has been selected. Also, restores rhs to its original state. 1395 1396 Input Parameter: 1397 + pc - the preconditioner contex 1398 1399 Application Interface Routine: PCPostSolve() 1400 1401 Notes: 1402 The interface routine PCPostSolve() is not usually called directly by 1403 the user, but instead is called by KSPSolve(). 1404 */ 1405 static PetscErrorCode PCPostSolve_BDDC(PC pc, KSP ksp, Vec rhs, Vec x) 1406 { 1407 PetscErrorCode ierr; 1408 PC_BDDC *pcbddc = (PC_BDDC*)pc->data; 1409 1410 PetscFunctionBegin; 1411 /* add solution removed in presolve */ 1412 if (x && pcbddc->rhs_change) { 1413 if (pcbddc->temp_solution_used) { 1414 ierr = VecAXPY(x,1.0,pcbddc->temp_solution);CHKERRQ(ierr); 1415 } else if (pcbddc->benign_compute_correction && pcbddc->benign_vec) { 1416 ierr = VecAXPY(x,-1.0,pcbddc->benign_vec);CHKERRQ(ierr); 1417 } 1418 /* restore to original state (not for FETI-DP) */ 1419 if (ksp) pcbddc->temp_solution_used = PETSC_FALSE; 1420 } 1421 1422 /* restore rhs to its original state (not needed for FETI-DP) */ 1423 if (rhs && pcbddc->rhs_change) { 1424 ierr = VecSwap(rhs,pcbddc->original_rhs);CHKERRQ(ierr); 1425 pcbddc->rhs_change = PETSC_FALSE; 1426 } 1427 /* restore ksp guess state */ 1428 if (ksp) { 1429 ierr = KSPSetInitialGuessNonzero(ksp,pcbddc->ksp_guess_nonzero);CHKERRQ(ierr); 1430 /* reset flag for exact dirichlet trick */ 1431 pcbddc->exact_dirichlet_trick_app = PETSC_FALSE; 1432 } 1433 PetscFunctionReturn(0); 1434 } 1435 1436 /* 1437 PCSetUp_BDDC - Prepares for the use of the BDDC preconditioner 1438 by setting data structures and options. 1439 1440 Input Parameter: 1441 + pc - the preconditioner context 1442 1443 Application Interface Routine: PCSetUp() 1444 1445 Notes: 1446 The interface routine PCSetUp() is not usually called directly by 1447 the user, but instead is called by PCApply() if necessary. 1448 */ 1449 PetscErrorCode PCSetUp_BDDC(PC pc) 1450 { 1451 PC_BDDC* pcbddc = (PC_BDDC*)pc->data; 1452 PCBDDCSubSchurs sub_schurs; 1453 Mat_IS* matis; 1454 MatNullSpace nearnullspace; 1455 Mat lA; 1456 IS lP,zerodiag = NULL; 1457 PetscInt nrows,ncols; 1458 PetscBool computesubschurs; 1459 PetscBool computeconstraintsmatrix; 1460 PetscBool new_nearnullspace_provided,ismatis; 1461 PetscErrorCode ierr; 1462 1463 PetscFunctionBegin; 1464 ierr = PetscObjectTypeCompare((PetscObject)pc->pmat,MATIS,&ismatis);CHKERRQ(ierr); 1465 if (!ismatis) SETERRQ(PetscObjectComm((PetscObject)pc),PETSC_ERR_ARG_WRONG,"PCBDDC preconditioner requires matrix of type MATIS"); 1466 ierr = MatGetSize(pc->pmat,&nrows,&ncols);CHKERRQ(ierr); 1467 if (nrows != ncols) SETERRQ(PetscObjectComm((PetscObject)pc),PETSC_ERR_SUP,"PCBDDC preconditioner requires a square preconditioning matrix"); 1468 matis = (Mat_IS*)pc->pmat->data; 1469 /* the following lines of code should be replaced by a better logic between PCIS, PCNN, PCBDDC and other future nonoverlapping preconditioners */ 1470 /* For BDDC we need to define a local "Neumann" problem different to that defined in PCISSetup 1471 Also, BDDC builds its own KSP for the Dirichlet problem */ 1472 if (!pc->setupcalled || pc->flag == DIFFERENT_NONZERO_PATTERN) pcbddc->recompute_topography = PETSC_TRUE; 1473 if (pcbddc->recompute_topography) { 1474 pcbddc->graphanalyzed = PETSC_FALSE; 1475 computeconstraintsmatrix = PETSC_TRUE; 1476 } else { 1477 computeconstraintsmatrix = PETSC_FALSE; 1478 } 1479 1480 /* check parameters' compatibility */ 1481 if (!pcbddc->use_deluxe_scaling) pcbddc->deluxe_zerorows = PETSC_FALSE; 1482 pcbddc->adaptive_selection = (PetscBool)(pcbddc->adaptive_threshold[0] != 0.0 || pcbddc->adaptive_threshold[1] != 0.0); 1483 pcbddc->adaptive_userdefined = (PetscBool)(pcbddc->adaptive_selection && pcbddc->adaptive_userdefined); 1484 if (pcbddc->adaptive_selection) pcbddc->use_faces = PETSC_TRUE; 1485 1486 computesubschurs = (PetscBool)(pcbddc->adaptive_selection || pcbddc->use_deluxe_scaling); 1487 if (pcbddc->switch_static) { 1488 PetscBool ismatis; 1489 ierr = PetscObjectTypeCompare((PetscObject)pc->mat,MATIS,&ismatis);CHKERRQ(ierr); 1490 if (!ismatis) SETERRQ(PetscObjectComm((PetscObject)pc),PETSC_ERR_SUP,"When the static switch is one, the iteration matrix should be of type MATIS"); 1491 } 1492 1493 /* activate all connected components if the netflux has been requested */ 1494 if (pcbddc->compute_nonetflux) { 1495 pcbddc->use_vertices = PETSC_TRUE; 1496 pcbddc->use_edges = PETSC_TRUE; 1497 pcbddc->use_faces = PETSC_TRUE; 1498 } 1499 1500 /* Get stdout for dbg */ 1501 if (pcbddc->dbg_flag) { 1502 if (!pcbddc->dbg_viewer) { 1503 pcbddc->dbg_viewer = PETSC_VIEWER_STDOUT_(PetscObjectComm((PetscObject)pc)); 1504 ierr = PetscViewerASCIIPushSynchronized(pcbddc->dbg_viewer);CHKERRQ(ierr); 1505 } 1506 ierr = PetscViewerASCIIAddTab(pcbddc->dbg_viewer,2*pcbddc->current_level);CHKERRQ(ierr); 1507 } 1508 1509 /* process topology information */ 1510 if (pcbddc->recompute_topography) { 1511 ierr = PCBDDCComputeLocalTopologyInfo(pc);CHKERRQ(ierr); 1512 if (pcbddc->discretegradient) { 1513 ierr = PCBDDCNedelecSupport(pc);CHKERRQ(ierr); 1514 } 1515 } 1516 1517 /* change basis if requested by the user */ 1518 if (pcbddc->user_ChangeOfBasisMatrix) { 1519 /* use_change_of_basis flag is used to automatically compute a change of basis from constraints */ 1520 pcbddc->use_change_of_basis = PETSC_FALSE; 1521 ierr = PCBDDCComputeLocalMatrix(pc,pcbddc->user_ChangeOfBasisMatrix);CHKERRQ(ierr); 1522 } else { 1523 ierr = MatDestroy(&pcbddc->local_mat);CHKERRQ(ierr); 1524 ierr = PetscObjectReference((PetscObject)matis->A);CHKERRQ(ierr); 1525 pcbddc->local_mat = matis->A; 1526 } 1527 1528 /* 1529 Compute change of basis on local pressures (aka zerodiag dofs) with the benign trick 1530 This should come earlier then PCISSetUp for extracting the correct subdomain matrices 1531 */ 1532 ierr = PCBDDCBenignShellMat(pc,PETSC_TRUE);CHKERRQ(ierr); 1533 if (pcbddc->benign_saddle_point) { 1534 PC_IS* pcis = (PC_IS*)pc->data; 1535 1536 if (pcbddc->user_ChangeOfBasisMatrix || pcbddc->use_change_of_basis || !computesubschurs) pcbddc->benign_change_explicit = PETSC_TRUE; 1537 /* detect local saddle point and change the basis in pcbddc->local_mat (TODO: reuse case) */ 1538 ierr = PCBDDCBenignDetectSaddlePoint(pc,&zerodiag);CHKERRQ(ierr); 1539 /* pop B0 mat from local mat */ 1540 ierr = PCBDDCBenignPopOrPushB0(pc,PETSC_TRUE);CHKERRQ(ierr); 1541 /* give pcis a hint to not reuse submatrices during PCISCreate */ 1542 if (pc->flag == SAME_NONZERO_PATTERN && pcis->reusesubmatrices == PETSC_TRUE) { 1543 if (pcbddc->benign_n && (pcbddc->benign_change_explicit || pcbddc->dbg_flag)) { 1544 pcis->reusesubmatrices = PETSC_FALSE; 1545 } else { 1546 pcis->reusesubmatrices = PETSC_TRUE; 1547 } 1548 } else { 1549 pcis->reusesubmatrices = PETSC_FALSE; 1550 } 1551 } 1552 1553 /* propagate relevant information */ 1554 if (matis->A->symmetric_set) { 1555 ierr = MatSetOption(pcbddc->local_mat,MAT_SYMMETRIC,matis->A->symmetric);CHKERRQ(ierr); 1556 } 1557 if (matis->A->spd_set) { 1558 ierr = MatSetOption(pcbddc->local_mat,MAT_SPD,matis->A->spd);CHKERRQ(ierr); 1559 } 1560 1561 /* Set up all the "iterative substructuring" common block without computing solvers */ 1562 { 1563 Mat temp_mat; 1564 1565 temp_mat = matis->A; 1566 matis->A = pcbddc->local_mat; 1567 ierr = PCISSetUp(pc,PETSC_FALSE);CHKERRQ(ierr); 1568 pcbddc->local_mat = matis->A; 1569 matis->A = temp_mat; 1570 } 1571 1572 /* Analyze interface */ 1573 if (!pcbddc->graphanalyzed) { 1574 ierr = PCBDDCAnalyzeInterface(pc);CHKERRQ(ierr); 1575 computeconstraintsmatrix = PETSC_TRUE; 1576 if (pcbddc->adaptive_selection && !pcbddc->use_deluxe_scaling && !pcbddc->mat_graph->twodim) { 1577 SETERRQ(PetscObjectComm((PetscObject)pc),PETSC_ERR_SUP,"Cannot compute the adaptive primal space for a problem with 3D edges without deluxe scaling"); 1578 } 1579 if (pcbddc->compute_nonetflux) { 1580 MatNullSpace nnfnnsp; 1581 1582 if (!pcbddc->divudotp) SETERRQ(PetscObjectComm((PetscObject)pc),PETSC_ERR_SUP,"Missing divudotp operator"); 1583 ierr = PCBDDCComputeNoNetFlux(pc->pmat,pcbddc->divudotp,pcbddc->divudotp_trans,pcbddc->divudotp_vl2l,pcbddc->mat_graph,&nnfnnsp);CHKERRQ(ierr); 1584 /* TODO what if a nearnullspace is already attached? */ 1585 if (nnfnnsp) { 1586 ierr = MatSetNearNullSpace(pc->pmat,nnfnnsp);CHKERRQ(ierr); 1587 ierr = MatNullSpaceDestroy(&nnfnnsp);CHKERRQ(ierr); 1588 } 1589 } 1590 } 1591 1592 /* check existence of a divergence free extension, i.e. 1593 b(v_I,p_0) = 0 for all v_I (raise error if not). 1594 Also, check that PCBDDCBenignGetOrSetP0 works */ 1595 if (pcbddc->benign_saddle_point && pcbddc->dbg_flag > 1) { 1596 ierr = PCBDDCBenignCheck(pc,zerodiag);CHKERRQ(ierr); 1597 } 1598 ierr = ISDestroy(&zerodiag);CHKERRQ(ierr); 1599 1600 /* Setup local dirichlet solver ksp_D and sub_schurs solvers */ 1601 if (computesubschurs && pcbddc->recompute_topography) { 1602 ierr = PCBDDCInitSubSchurs(pc);CHKERRQ(ierr); 1603 } 1604 /* SetUp Scaling operator (scaling matrices could be needed in SubSchursSetUp)*/ 1605 if (!pcbddc->use_deluxe_scaling) { 1606 ierr = PCBDDCScalingSetUp(pc);CHKERRQ(ierr); 1607 } 1608 1609 /* finish setup solvers and do adaptive selection of constraints */ 1610 sub_schurs = pcbddc->sub_schurs; 1611 if (sub_schurs && sub_schurs->schur_explicit) { 1612 if (computesubschurs) { 1613 ierr = PCBDDCSetUpSubSchurs(pc);CHKERRQ(ierr); 1614 } 1615 ierr = PCBDDCSetUpLocalSolvers(pc,PETSC_TRUE,PETSC_FALSE);CHKERRQ(ierr); 1616 } else { 1617 ierr = PCBDDCSetUpLocalSolvers(pc,PETSC_TRUE,PETSC_FALSE);CHKERRQ(ierr); 1618 if (computesubschurs) { 1619 ierr = PCBDDCSetUpSubSchurs(pc);CHKERRQ(ierr); 1620 } 1621 } 1622 if (pcbddc->adaptive_selection) { 1623 ierr = PCBDDCAdaptiveSelection(pc);CHKERRQ(ierr); 1624 computeconstraintsmatrix = PETSC_TRUE; 1625 } 1626 1627 /* infer if NullSpace object attached to Mat via MatSetNearNullSpace has changed */ 1628 new_nearnullspace_provided = PETSC_FALSE; 1629 ierr = MatGetNearNullSpace(pc->pmat,&nearnullspace);CHKERRQ(ierr); 1630 if (pcbddc->onearnullspace) { /* already used nearnullspace */ 1631 if (!nearnullspace) { /* near null space attached to mat has been destroyed */ 1632 new_nearnullspace_provided = PETSC_TRUE; 1633 } else { 1634 /* determine if the two nullspaces are different (should be lightweight) */ 1635 if (nearnullspace != pcbddc->onearnullspace) { 1636 new_nearnullspace_provided = PETSC_TRUE; 1637 } else { /* maybe the user has changed the content of the nearnullspace so check vectors ObjectStateId */ 1638 PetscInt i; 1639 const Vec *nearnullvecs; 1640 PetscObjectState state; 1641 PetscInt nnsp_size; 1642 ierr = MatNullSpaceGetVecs(nearnullspace,NULL,&nnsp_size,&nearnullvecs);CHKERRQ(ierr); 1643 for (i=0;i<nnsp_size;i++) { 1644 ierr = PetscObjectStateGet((PetscObject)nearnullvecs[i],&state);CHKERRQ(ierr); 1645 if (pcbddc->onearnullvecs_state[i] != state) { 1646 new_nearnullspace_provided = PETSC_TRUE; 1647 break; 1648 } 1649 } 1650 } 1651 } 1652 } else { 1653 if (!nearnullspace) { /* both nearnullspaces are null */ 1654 new_nearnullspace_provided = PETSC_FALSE; 1655 } else { /* nearnullspace attached later */ 1656 new_nearnullspace_provided = PETSC_TRUE; 1657 } 1658 } 1659 1660 /* Setup constraints and related work vectors */ 1661 /* reset primal space flags */ 1662 pcbddc->new_primal_space = PETSC_FALSE; 1663 pcbddc->new_primal_space_local = PETSC_FALSE; 1664 if (computeconstraintsmatrix || new_nearnullspace_provided) { 1665 /* It also sets the primal space flags */ 1666 ierr = PCBDDCConstraintsSetUp(pc);CHKERRQ(ierr); 1667 } 1668 /* Allocate needed local vectors (which depends on quantities defined during ConstraintsSetUp) */ 1669 ierr = PCBDDCSetUpLocalWorkVectors(pc);CHKERRQ(ierr); 1670 1671 if (pcbddc->use_change_of_basis) { 1672 PC_IS *pcis = (PC_IS*)(pc->data); 1673 1674 ierr = PCBDDCComputeLocalMatrix(pc,pcbddc->ChangeOfBasisMatrix);CHKERRQ(ierr); 1675 if (pcbddc->benign_change) { 1676 ierr = MatDestroy(&pcbddc->benign_B0);CHKERRQ(ierr); 1677 /* pop B0 from pcbddc->local_mat */ 1678 ierr = PCBDDCBenignPopOrPushB0(pc,PETSC_TRUE);CHKERRQ(ierr); 1679 } 1680 /* get submatrices */ 1681 ierr = MatDestroy(&pcis->A_IB);CHKERRQ(ierr); 1682 ierr = MatDestroy(&pcis->A_BI);CHKERRQ(ierr); 1683 ierr = MatDestroy(&pcis->A_BB);CHKERRQ(ierr); 1684 ierr = MatCreateSubMatrix(pcbddc->local_mat,pcis->is_B_local,pcis->is_B_local,MAT_INITIAL_MATRIX,&pcis->A_BB);CHKERRQ(ierr); 1685 ierr = MatCreateSubMatrix(pcbddc->local_mat,pcis->is_I_local,pcis->is_B_local,MAT_INITIAL_MATRIX,&pcis->A_IB);CHKERRQ(ierr); 1686 ierr = MatCreateSubMatrix(pcbddc->local_mat,pcis->is_B_local,pcis->is_I_local,MAT_INITIAL_MATRIX,&pcis->A_BI);CHKERRQ(ierr); 1687 /* set flag in pcis to not reuse submatrices during PCISCreate */ 1688 pcis->reusesubmatrices = PETSC_FALSE; 1689 } else if (!pcbddc->user_ChangeOfBasisMatrix && !pcbddc->benign_change) { 1690 ierr = MatDestroy(&pcbddc->local_mat);CHKERRQ(ierr); 1691 ierr = PetscObjectReference((PetscObject)matis->A);CHKERRQ(ierr); 1692 pcbddc->local_mat = matis->A; 1693 } 1694 1695 /* interface pressure block row for B_C */ 1696 ierr = PetscObjectQuery((PetscObject)pc,"__KSPFETIDP_lP" ,(PetscObject*)&lP);CHKERRQ(ierr); 1697 ierr = PetscObjectQuery((PetscObject)pc,"__KSPFETIDP_lA" ,(PetscObject*)&lA);CHKERRQ(ierr); 1698 if (lA && lP) { 1699 PC_IS* pcis = (PC_IS*)pc->data; 1700 Mat B_BI,B_BB,Bt_BI,Bt_BB; 1701 PetscBool issym; 1702 ierr = MatIsSymmetric(lA,PETSC_SMALL,&issym);CHKERRQ(ierr); 1703 if (issym) { 1704 ierr = MatCreateSubMatrix(lA,lP,pcis->is_I_local,MAT_INITIAL_MATRIX,&B_BI);CHKERRQ(ierr); 1705 ierr = MatCreateSubMatrix(lA,lP,pcis->is_B_local,MAT_INITIAL_MATRIX,&B_BB);CHKERRQ(ierr); 1706 ierr = MatCreateTranspose(B_BI,&Bt_BI);CHKERRQ(ierr); 1707 ierr = MatCreateTranspose(B_BB,&Bt_BB);CHKERRQ(ierr); 1708 } else { 1709 ierr = MatCreateSubMatrix(lA,lP,pcis->is_I_local,MAT_INITIAL_MATRIX,&B_BI);CHKERRQ(ierr); 1710 ierr = MatCreateSubMatrix(lA,lP,pcis->is_B_local,MAT_INITIAL_MATRIX,&B_BB);CHKERRQ(ierr); 1711 ierr = MatCreateSubMatrix(lA,pcis->is_I_local,lP,MAT_INITIAL_MATRIX,&Bt_BI);CHKERRQ(ierr); 1712 ierr = MatCreateSubMatrix(lA,pcis->is_B_local,lP,MAT_INITIAL_MATRIX,&Bt_BB);CHKERRQ(ierr); 1713 } 1714 ierr = PetscObjectCompose((PetscObject)pc,"__KSPFETIDP_B_BI",(PetscObject)B_BI);CHKERRQ(ierr); 1715 ierr = PetscObjectCompose((PetscObject)pc,"__KSPFETIDP_B_BB",(PetscObject)B_BB);CHKERRQ(ierr); 1716 ierr = PetscObjectCompose((PetscObject)pc,"__KSPFETIDP_Bt_BI",(PetscObject)Bt_BI);CHKERRQ(ierr); 1717 ierr = PetscObjectCompose((PetscObject)pc,"__KSPFETIDP_Bt_BB",(PetscObject)Bt_BB);CHKERRQ(ierr); 1718 ierr = MatDestroy(&B_BI);CHKERRQ(ierr); 1719 ierr = MatDestroy(&B_BB);CHKERRQ(ierr); 1720 ierr = MatDestroy(&Bt_BI);CHKERRQ(ierr); 1721 ierr = MatDestroy(&Bt_BB);CHKERRQ(ierr); 1722 } 1723 1724 /* SetUp coarse and local Neumann solvers */ 1725 ierr = PCBDDCSetUpSolvers(pc);CHKERRQ(ierr); 1726 /* SetUp Scaling operator */ 1727 if (pcbddc->use_deluxe_scaling) { 1728 ierr = PCBDDCScalingSetUp(pc);CHKERRQ(ierr); 1729 } 1730 1731 /* mark topography as done */ 1732 pcbddc->recompute_topography = PETSC_FALSE; 1733 1734 /* wrap pcis->A_IB and pcis->A_BI if we did not change explicitly the variables on the pressures */ 1735 ierr = PCBDDCBenignShellMat(pc,PETSC_FALSE);CHKERRQ(ierr); 1736 1737 if (pcbddc->dbg_flag) { 1738 ierr = PetscViewerASCIISubtractTab(pcbddc->dbg_viewer,2*pcbddc->current_level);CHKERRQ(ierr); 1739 } 1740 PetscFunctionReturn(0); 1741 } 1742 1743 /* 1744 PCApply_BDDC - Applies the BDDC operator to a vector. 1745 1746 Input Parameters: 1747 + pc - the preconditioner context 1748 - r - input vector (global) 1749 1750 Output Parameter: 1751 . z - output vector (global) 1752 1753 Application Interface Routine: PCApply() 1754 */ 1755 PetscErrorCode PCApply_BDDC(PC pc,Vec r,Vec z) 1756 { 1757 PC_IS *pcis = (PC_IS*)(pc->data); 1758 PC_BDDC *pcbddc = (PC_BDDC*)(pc->data); 1759 PetscInt n_B = pcis->n_B, n_D = pcis->n - n_B; 1760 PetscErrorCode ierr; 1761 const PetscScalar one = 1.0; 1762 const PetscScalar m_one = -1.0; 1763 const PetscScalar zero = 0.0; 1764 1765 /* This code is similar to that provided in nn.c for PCNN 1766 NN interface preconditioner changed to BDDC 1767 Added support for M_3 preconditioner in the reference article (code is active if pcbddc->switch_static == PETSC_TRUE) */ 1768 1769 PetscFunctionBegin; 1770 ierr = PetscCitationsRegister(citation,&cited);CHKERRQ(ierr); 1771 if (pcbddc->ChangeOfBasisMatrix) { 1772 Vec swap; 1773 1774 ierr = MatMultTranspose(pcbddc->ChangeOfBasisMatrix,r,pcbddc->work_change);CHKERRQ(ierr); 1775 swap = pcbddc->work_change; 1776 pcbddc->work_change = r; 1777 r = swap; 1778 /* save rhs so that we don't need to apply the change of basis for the exact dirichlet trick in PreSolve */ 1779 if (pcbddc->benign_apply_coarse_only && pcbddc->use_exact_dirichlet_trick && pcbddc->change_interior) { 1780 ierr = VecCopy(r,pcis->vec1_global);CHKERRQ(ierr); 1781 ierr = VecLockPush(pcis->vec1_global);CHKERRQ(ierr); 1782 } 1783 } 1784 if (pcbddc->benign_have_null) { /* get p0 from r */ 1785 ierr = PCBDDCBenignGetOrSetP0(pc,r,PETSC_TRUE);CHKERRQ(ierr); 1786 } 1787 if (!pcbddc->exact_dirichlet_trick_app && !pcbddc->benign_apply_coarse_only) { 1788 ierr = VecCopy(r,z);CHKERRQ(ierr); 1789 /* First Dirichlet solve */ 1790 ierr = VecScatterBegin(pcis->global_to_D,r,pcis->vec1_D,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1791 ierr = VecScatterEnd(pcis->global_to_D,r,pcis->vec1_D,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1792 /* 1793 Assembling right hand side for BDDC operator 1794 - pcis->vec1_D for the Dirichlet part (if needed, i.e. pcbddc->switch_static == PETSC_TRUE) 1795 - pcis->vec1_B the interface part of the global vector z 1796 */ 1797 if (n_D) { 1798 ierr = KSPSolve(pcbddc->ksp_D,pcis->vec1_D,pcis->vec2_D);CHKERRQ(ierr); 1799 ierr = VecScale(pcis->vec2_D,m_one);CHKERRQ(ierr); 1800 if (pcbddc->switch_static) { 1801 Mat_IS *matis = (Mat_IS*)(pc->mat->data); 1802 1803 ierr = VecSet(pcis->vec1_N,0.);CHKERRQ(ierr); 1804 ierr = VecScatterBegin(pcis->N_to_D,pcis->vec2_D,pcis->vec1_N,INSERT_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 1805 ierr = VecScatterEnd(pcis->N_to_D,pcis->vec2_D,pcis->vec1_N,INSERT_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 1806 if (!pcbddc->switch_static_change) { 1807 ierr = MatMult(matis->A,pcis->vec1_N,pcis->vec2_N);CHKERRQ(ierr); 1808 } else { 1809 ierr = MatMult(pcbddc->switch_static_change,pcis->vec1_N,pcis->vec2_N);CHKERRQ(ierr); 1810 ierr = MatMult(matis->A,pcis->vec2_N,pcis->vec1_N);CHKERRQ(ierr); 1811 ierr = MatMultTranspose(pcbddc->switch_static_change,pcis->vec1_N,pcis->vec2_N);CHKERRQ(ierr); 1812 } 1813 ierr = VecScatterBegin(pcis->N_to_D,pcis->vec2_N,pcis->vec1_D,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1814 ierr = VecScatterEnd(pcis->N_to_D,pcis->vec2_N,pcis->vec1_D,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1815 ierr = VecScatterBegin(pcis->N_to_B,pcis->vec2_N,pcis->vec1_B,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1816 ierr = VecScatterEnd(pcis->N_to_B,pcis->vec2_N,pcis->vec1_B,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1817 } else { 1818 ierr = MatMult(pcis->A_BI,pcis->vec2_D,pcis->vec1_B);CHKERRQ(ierr); 1819 } 1820 } else { 1821 ierr = VecSet(pcis->vec1_B,zero);CHKERRQ(ierr); 1822 } 1823 ierr = VecScatterBegin(pcis->global_to_B,pcis->vec1_B,z,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 1824 ierr = VecScatterEnd(pcis->global_to_B,pcis->vec1_B,z,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 1825 ierr = PCBDDCScalingRestriction(pc,z,pcis->vec1_B);CHKERRQ(ierr); 1826 } else { 1827 if (!pcbddc->benign_apply_coarse_only) { 1828 ierr = PCBDDCScalingRestriction(pc,r,pcis->vec1_B);CHKERRQ(ierr); 1829 } 1830 } 1831 1832 /* Apply interface preconditioner 1833 input/output vecs: pcis->vec1_B and pcis->vec1_D */ 1834 ierr = PCBDDCApplyInterfacePreconditioner(pc,PETSC_FALSE);CHKERRQ(ierr); 1835 1836 /* Apply transpose of partition of unity operator */ 1837 ierr = PCBDDCScalingExtension(pc,pcis->vec1_B,z);CHKERRQ(ierr); 1838 1839 /* Second Dirichlet solve and assembling of output */ 1840 ierr = VecScatterBegin(pcis->global_to_B,z,pcis->vec1_B,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1841 ierr = VecScatterEnd(pcis->global_to_B,z,pcis->vec1_B,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1842 if (n_B) { 1843 if (pcbddc->switch_static) { 1844 Mat_IS *matis = (Mat_IS*)(pc->mat->data); 1845 1846 ierr = VecScatterBegin(pcis->N_to_D,pcis->vec1_D,pcis->vec1_N,INSERT_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 1847 ierr = VecScatterEnd(pcis->N_to_D,pcis->vec1_D,pcis->vec1_N,INSERT_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 1848 ierr = VecScatterBegin(pcis->N_to_B,pcis->vec1_B,pcis->vec1_N,INSERT_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 1849 ierr = VecScatterEnd(pcis->N_to_B,pcis->vec1_B,pcis->vec1_N,INSERT_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 1850 if (!pcbddc->switch_static_change) { 1851 ierr = MatMult(matis->A,pcis->vec1_N,pcis->vec2_N);CHKERRQ(ierr); 1852 } else { 1853 ierr = MatMult(pcbddc->switch_static_change,pcis->vec1_N,pcis->vec2_N);CHKERRQ(ierr); 1854 ierr = MatMult(matis->A,pcis->vec2_N,pcis->vec1_N);CHKERRQ(ierr); 1855 ierr = MatMultTranspose(pcbddc->switch_static_change,pcis->vec1_N,pcis->vec2_N);CHKERRQ(ierr); 1856 } 1857 ierr = VecScatterBegin(pcis->N_to_D,pcis->vec2_N,pcis->vec3_D,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1858 ierr = VecScatterEnd(pcis->N_to_D,pcis->vec2_N,pcis->vec3_D,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1859 } else { 1860 ierr = MatMult(pcis->A_IB,pcis->vec1_B,pcis->vec3_D);CHKERRQ(ierr); 1861 } 1862 } else if (pcbddc->switch_static) { /* n_B is zero */ 1863 Mat_IS *matis = (Mat_IS*)(pc->mat->data); 1864 1865 if (!pcbddc->switch_static_change) { 1866 ierr = MatMult(matis->A,pcis->vec1_D,pcis->vec3_D);CHKERRQ(ierr); 1867 } else { 1868 ierr = MatMult(pcbddc->switch_static_change,pcis->vec1_D,pcis->vec1_N);CHKERRQ(ierr); 1869 ierr = MatMult(matis->A,pcis->vec1_N,pcis->vec2_N);CHKERRQ(ierr); 1870 ierr = MatMultTranspose(pcbddc->switch_static_change,pcis->vec2_N,pcis->vec3_D);CHKERRQ(ierr); 1871 } 1872 } 1873 ierr = KSPSolve(pcbddc->ksp_D,pcis->vec3_D,pcis->vec4_D);CHKERRQ(ierr); 1874 1875 if (!pcbddc->exact_dirichlet_trick_app && !pcbddc->benign_apply_coarse_only) { 1876 if (pcbddc->switch_static) { 1877 ierr = VecAXPBYPCZ(pcis->vec2_D,m_one,one,m_one,pcis->vec4_D,pcis->vec1_D);CHKERRQ(ierr); 1878 } else { 1879 ierr = VecAXPBY(pcis->vec2_D,m_one,m_one,pcis->vec4_D);CHKERRQ(ierr); 1880 } 1881 ierr = VecScatterBegin(pcis->global_to_D,pcis->vec2_D,z,INSERT_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 1882 ierr = VecScatterEnd(pcis->global_to_D,pcis->vec2_D,z,INSERT_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 1883 } else { 1884 if (pcbddc->switch_static) { 1885 ierr = VecAXPBY(pcis->vec4_D,one,m_one,pcis->vec1_D);CHKERRQ(ierr); 1886 } else { 1887 ierr = VecScale(pcis->vec4_D,m_one);CHKERRQ(ierr); 1888 } 1889 ierr = VecScatterBegin(pcis->global_to_D,pcis->vec4_D,z,INSERT_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 1890 ierr = VecScatterEnd(pcis->global_to_D,pcis->vec4_D,z,INSERT_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 1891 } 1892 if (pcbddc->benign_have_null) { /* set p0 (computed in PCBDDCApplyInterface) */ 1893 if (pcbddc->benign_apply_coarse_only) { 1894 ierr = PetscMemzero(pcbddc->benign_p0,pcbddc->benign_n*sizeof(PetscScalar));CHKERRQ(ierr); 1895 } 1896 ierr = PCBDDCBenignGetOrSetP0(pc,z,PETSC_FALSE);CHKERRQ(ierr); 1897 } 1898 1899 if (pcbddc->ChangeOfBasisMatrix) { 1900 pcbddc->work_change = r; 1901 ierr = VecCopy(z,pcbddc->work_change);CHKERRQ(ierr); 1902 ierr = MatMult(pcbddc->ChangeOfBasisMatrix,pcbddc->work_change,z);CHKERRQ(ierr); 1903 } 1904 PetscFunctionReturn(0); 1905 } 1906 1907 /* 1908 PCApplyTranspose_BDDC - Applies the transpose of the BDDC operator to a vector. 1909 1910 Input Parameters: 1911 + pc - the preconditioner context 1912 - r - input vector (global) 1913 1914 Output Parameter: 1915 . z - output vector (global) 1916 1917 Application Interface Routine: PCApplyTranspose() 1918 */ 1919 PetscErrorCode PCApplyTranspose_BDDC(PC pc,Vec r,Vec z) 1920 { 1921 PC_IS *pcis = (PC_IS*)(pc->data); 1922 PC_BDDC *pcbddc = (PC_BDDC*)(pc->data); 1923 PetscInt n_B = pcis->n_B, n_D = pcis->n - n_B; 1924 PetscErrorCode ierr; 1925 const PetscScalar one = 1.0; 1926 const PetscScalar m_one = -1.0; 1927 const PetscScalar zero = 0.0; 1928 1929 PetscFunctionBegin; 1930 ierr = PetscCitationsRegister(citation,&cited);CHKERRQ(ierr); 1931 if (pcbddc->ChangeOfBasisMatrix) { 1932 Vec swap; 1933 1934 ierr = MatMultTranspose(pcbddc->ChangeOfBasisMatrix,r,pcbddc->work_change);CHKERRQ(ierr); 1935 swap = pcbddc->work_change; 1936 pcbddc->work_change = r; 1937 r = swap; 1938 /* save rhs so that we don't need to apply the change of basis for the exact dirichlet trick in PreSolve */ 1939 if (pcbddc->benign_apply_coarse_only && pcbddc->exact_dirichlet_trick_app && pcbddc->change_interior) { 1940 ierr = VecCopy(r,pcis->vec1_global);CHKERRQ(ierr); 1941 ierr = VecLockPush(pcis->vec1_global);CHKERRQ(ierr); 1942 } 1943 } 1944 if (pcbddc->benign_have_null) { /* get p0 from r */ 1945 ierr = PCBDDCBenignGetOrSetP0(pc,r,PETSC_TRUE);CHKERRQ(ierr); 1946 } 1947 if (!pcbddc->exact_dirichlet_trick_app && !pcbddc->benign_apply_coarse_only) { 1948 ierr = VecCopy(r,z);CHKERRQ(ierr); 1949 /* First Dirichlet solve */ 1950 ierr = VecScatterBegin(pcis->global_to_D,r,pcis->vec1_D,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1951 ierr = VecScatterEnd(pcis->global_to_D,r,pcis->vec1_D,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1952 /* 1953 Assembling right hand side for BDDC operator 1954 - pcis->vec1_D for the Dirichlet part (if needed, i.e. pcbddc->switch_static == PETSC_TRUE) 1955 - pcis->vec1_B the interface part of the global vector z 1956 */ 1957 if (n_D) { 1958 ierr = KSPSolveTranspose(pcbddc->ksp_D,pcis->vec1_D,pcis->vec2_D);CHKERRQ(ierr); 1959 ierr = VecScale(pcis->vec2_D,m_one);CHKERRQ(ierr); 1960 if (pcbddc->switch_static) { 1961 Mat_IS *matis = (Mat_IS*)(pc->mat->data); 1962 1963 ierr = VecSet(pcis->vec1_N,0.);CHKERRQ(ierr); 1964 ierr = VecScatterBegin(pcis->N_to_D,pcis->vec2_D,pcis->vec1_N,INSERT_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 1965 ierr = VecScatterEnd(pcis->N_to_D,pcis->vec2_D,pcis->vec1_N,INSERT_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 1966 if (!pcbddc->switch_static_change) { 1967 ierr = MatMultTranspose(matis->A,pcis->vec1_N,pcis->vec2_N);CHKERRQ(ierr); 1968 } else { 1969 ierr = MatMult(pcbddc->switch_static_change,pcis->vec1_N,pcis->vec2_N);CHKERRQ(ierr); 1970 ierr = MatMultTranspose(matis->A,pcis->vec2_N,pcis->vec1_N);CHKERRQ(ierr); 1971 ierr = MatMultTranspose(pcbddc->switch_static_change,pcis->vec1_N,pcis->vec2_N);CHKERRQ(ierr); 1972 } 1973 ierr = VecScatterBegin(pcis->N_to_D,pcis->vec2_N,pcis->vec1_D,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1974 ierr = VecScatterEnd(pcis->N_to_D,pcis->vec2_N,pcis->vec1_D,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1975 ierr = VecScatterBegin(pcis->N_to_B,pcis->vec2_N,pcis->vec1_B,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1976 ierr = VecScatterEnd(pcis->N_to_B,pcis->vec2_N,pcis->vec1_B,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1977 } else { 1978 ierr = MatMultTranspose(pcis->A_IB,pcis->vec2_D,pcis->vec1_B);CHKERRQ(ierr); 1979 } 1980 } else { 1981 ierr = VecSet(pcis->vec1_B,zero);CHKERRQ(ierr); 1982 } 1983 ierr = VecScatterBegin(pcis->global_to_B,pcis->vec1_B,z,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 1984 ierr = VecScatterEnd(pcis->global_to_B,pcis->vec1_B,z,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 1985 ierr = PCBDDCScalingRestriction(pc,z,pcis->vec1_B);CHKERRQ(ierr); 1986 } else { 1987 ierr = PCBDDCScalingRestriction(pc,r,pcis->vec1_B);CHKERRQ(ierr); 1988 } 1989 1990 /* Apply interface preconditioner 1991 input/output vecs: pcis->vec1_B and pcis->vec1_D */ 1992 ierr = PCBDDCApplyInterfacePreconditioner(pc,PETSC_TRUE);CHKERRQ(ierr); 1993 1994 /* Apply transpose of partition of unity operator */ 1995 ierr = PCBDDCScalingExtension(pc,pcis->vec1_B,z);CHKERRQ(ierr); 1996 1997 /* Second Dirichlet solve and assembling of output */ 1998 ierr = VecScatterBegin(pcis->global_to_B,z,pcis->vec1_B,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1999 ierr = VecScatterEnd(pcis->global_to_B,z,pcis->vec1_B,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2000 if (n_B) { 2001 if (pcbddc->switch_static) { 2002 Mat_IS *matis = (Mat_IS*)(pc->mat->data); 2003 2004 ierr = VecScatterBegin(pcis->N_to_D,pcis->vec1_D,pcis->vec1_N,INSERT_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 2005 ierr = VecScatterEnd(pcis->N_to_D,pcis->vec1_D,pcis->vec1_N,INSERT_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 2006 ierr = VecScatterBegin(pcis->N_to_B,pcis->vec1_B,pcis->vec1_N,INSERT_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 2007 ierr = VecScatterEnd(pcis->N_to_B,pcis->vec1_B,pcis->vec1_N,INSERT_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 2008 if (!pcbddc->switch_static_change) { 2009 ierr = MatMultTranspose(matis->A,pcis->vec1_N,pcis->vec2_N);CHKERRQ(ierr); 2010 } else { 2011 ierr = MatMult(pcbddc->switch_static_change,pcis->vec1_N,pcis->vec2_N);CHKERRQ(ierr); 2012 ierr = MatMultTranspose(matis->A,pcis->vec2_N,pcis->vec1_N);CHKERRQ(ierr); 2013 ierr = MatMultTranspose(pcbddc->switch_static_change,pcis->vec1_N,pcis->vec2_N);CHKERRQ(ierr); 2014 } 2015 ierr = VecScatterBegin(pcis->N_to_D,pcis->vec2_N,pcis->vec3_D,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2016 ierr = VecScatterEnd(pcis->N_to_D,pcis->vec2_N,pcis->vec3_D,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2017 } else { 2018 ierr = MatMultTranspose(pcis->A_BI,pcis->vec1_B,pcis->vec3_D);CHKERRQ(ierr); 2019 } 2020 } else if (pcbddc->switch_static) { /* n_B is zero */ 2021 Mat_IS *matis = (Mat_IS*)(pc->mat->data); 2022 2023 if (!pcbddc->switch_static_change) { 2024 ierr = MatMultTranspose(matis->A,pcis->vec1_D,pcis->vec3_D);CHKERRQ(ierr); 2025 } else { 2026 ierr = MatMult(pcbddc->switch_static_change,pcis->vec1_D,pcis->vec1_N);CHKERRQ(ierr); 2027 ierr = MatMultTranspose(matis->A,pcis->vec1_N,pcis->vec2_N);CHKERRQ(ierr); 2028 ierr = MatMultTranspose(pcbddc->switch_static_change,pcis->vec2_N,pcis->vec3_D);CHKERRQ(ierr); 2029 } 2030 } 2031 ierr = KSPSolveTranspose(pcbddc->ksp_D,pcis->vec3_D,pcis->vec4_D);CHKERRQ(ierr); 2032 if (!pcbddc->exact_dirichlet_trick_app && !pcbddc->benign_apply_coarse_only) { 2033 if (pcbddc->switch_static) { 2034 ierr = VecAXPBYPCZ(pcis->vec2_D,m_one,one,m_one,pcis->vec4_D,pcis->vec1_D);CHKERRQ(ierr); 2035 } else { 2036 ierr = VecAXPBY(pcis->vec2_D,m_one,m_one,pcis->vec4_D);CHKERRQ(ierr); 2037 } 2038 ierr = VecScatterBegin(pcis->global_to_D,pcis->vec2_D,z,INSERT_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 2039 ierr = VecScatterEnd(pcis->global_to_D,pcis->vec2_D,z,INSERT_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 2040 } else { 2041 if (pcbddc->switch_static) { 2042 ierr = VecAXPBY(pcis->vec4_D,one,m_one,pcis->vec1_D);CHKERRQ(ierr); 2043 } else { 2044 ierr = VecScale(pcis->vec4_D,m_one);CHKERRQ(ierr); 2045 } 2046 ierr = VecScatterBegin(pcis->global_to_D,pcis->vec4_D,z,INSERT_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 2047 ierr = VecScatterEnd(pcis->global_to_D,pcis->vec4_D,z,INSERT_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 2048 } 2049 if (pcbddc->benign_have_null) { /* set p0 (computed in PCBDDCApplyInterface) */ 2050 ierr = PCBDDCBenignGetOrSetP0(pc,z,PETSC_FALSE);CHKERRQ(ierr); 2051 } 2052 if (pcbddc->ChangeOfBasisMatrix) { 2053 pcbddc->work_change = r; 2054 ierr = VecCopy(z,pcbddc->work_change);CHKERRQ(ierr); 2055 ierr = MatMult(pcbddc->ChangeOfBasisMatrix,pcbddc->work_change,z);CHKERRQ(ierr); 2056 } 2057 PetscFunctionReturn(0); 2058 } 2059 2060 PetscErrorCode PCReset_BDDC(PC pc) 2061 { 2062 PC_BDDC *pcbddc = (PC_BDDC*)pc->data; 2063 PC_IS *pcis = (PC_IS*)pc->data; 2064 KSP kspD,kspR,kspC; 2065 PetscErrorCode ierr; 2066 2067 PetscFunctionBegin; 2068 /* free BDDC custom data */ 2069 ierr = PCBDDCResetCustomization(pc);CHKERRQ(ierr); 2070 /* destroy objects related to topography */ 2071 ierr = PCBDDCResetTopography(pc);CHKERRQ(ierr); 2072 /* destroy objects for scaling operator */ 2073 ierr = PCBDDCScalingDestroy(pc);CHKERRQ(ierr); 2074 /* free solvers stuff */ 2075 ierr = PCBDDCResetSolvers(pc);CHKERRQ(ierr); 2076 /* free global vectors needed in presolve */ 2077 ierr = VecDestroy(&pcbddc->temp_solution);CHKERRQ(ierr); 2078 ierr = VecDestroy(&pcbddc->original_rhs);CHKERRQ(ierr); 2079 /* free data created by PCIS */ 2080 ierr = PCISDestroy(pc);CHKERRQ(ierr); 2081 2082 /* restore defaults */ 2083 kspD = pcbddc->ksp_D; 2084 kspR = pcbddc->ksp_R; 2085 kspC = pcbddc->coarse_ksp; 2086 ierr = PetscMemzero(pc->data,sizeof(*pcbddc));CHKERRQ(ierr); 2087 pcis->n_neigh = -1; 2088 pcis->scaling_factor = 1.0; 2089 pcis->reusesubmatrices = PETSC_TRUE; 2090 pcbddc->use_local_adj = PETSC_TRUE; 2091 pcbddc->use_vertices = PETSC_TRUE; 2092 pcbddc->use_edges = PETSC_TRUE; 2093 pcbddc->symmetric_primal = PETSC_TRUE; 2094 pcbddc->vertex_size = 1; 2095 pcbddc->recompute_topography = PETSC_TRUE; 2096 pcbddc->coarse_size = -1; 2097 pcbddc->use_exact_dirichlet_trick = PETSC_TRUE; 2098 pcbddc->coarsening_ratio = 8; 2099 pcbddc->coarse_eqs_per_proc = 1; 2100 pcbddc->benign_compute_correction = PETSC_TRUE; 2101 pcbddc->nedfield = -1; 2102 pcbddc->nedglobal = PETSC_TRUE; 2103 pcbddc->graphmaxcount = PETSC_MAX_INT; 2104 pcbddc->sub_schurs_layers = -1; 2105 pcbddc->ksp_D = kspD; 2106 pcbddc->ksp_R = kspR; 2107 pcbddc->coarse_ksp = kspC; 2108 PetscFunctionReturn(0); 2109 } 2110 2111 PetscErrorCode PCDestroy_BDDC(PC pc) 2112 { 2113 PC_BDDC *pcbddc = (PC_BDDC*)pc->data; 2114 PetscErrorCode ierr; 2115 2116 PetscFunctionBegin; 2117 ierr = PCReset_BDDC(pc);CHKERRQ(ierr); 2118 ierr = KSPDestroy(&pcbddc->ksp_D);CHKERRQ(ierr); 2119 ierr = KSPDestroy(&pcbddc->ksp_R);CHKERRQ(ierr); 2120 ierr = KSPDestroy(&pcbddc->coarse_ksp);CHKERRQ(ierr); 2121 ierr = PetscObjectComposeFunction((PetscObject)pc,"PCBDDCSetDiscreteGradient_C",NULL);CHKERRQ(ierr); 2122 ierr = PetscObjectComposeFunction((PetscObject)pc,"PCBDDCSetDivergenceMat_C",NULL);CHKERRQ(ierr); 2123 ierr = PetscObjectComposeFunction((PetscObject)pc,"PCBDDCSetChangeOfBasisMat_C",NULL);CHKERRQ(ierr); 2124 ierr = PetscObjectComposeFunction((PetscObject)pc,"PCBDDCSetPrimalVerticesLocalIS_C",NULL);CHKERRQ(ierr); 2125 ierr = PetscObjectComposeFunction((PetscObject)pc,"PCBDDCSetPrimalVerticesIS_C",NULL);CHKERRQ(ierr); 2126 ierr = PetscObjectComposeFunction((PetscObject)pc,"PCBDDCSetCoarseningRatio_C",NULL);CHKERRQ(ierr); 2127 ierr = PetscObjectComposeFunction((PetscObject)pc,"PCBDDCSetLevel_C",NULL);CHKERRQ(ierr); 2128 ierr = PetscObjectComposeFunction((PetscObject)pc,"PCBDDCSetUseExactDirichlet_C",NULL);CHKERRQ(ierr); 2129 ierr = PetscObjectComposeFunction((PetscObject)pc,"PCBDDCSetLevels_C",NULL);CHKERRQ(ierr); 2130 ierr = PetscObjectComposeFunction((PetscObject)pc,"PCBDDCSetDirichletBoundaries_C",NULL);CHKERRQ(ierr); 2131 ierr = PetscObjectComposeFunction((PetscObject)pc,"PCBDDCSetDirichletBoundariesLocal_C",NULL);CHKERRQ(ierr); 2132 ierr = PetscObjectComposeFunction((PetscObject)pc,"PCBDDCSetNeumannBoundaries_C",NULL);CHKERRQ(ierr); 2133 ierr = PetscObjectComposeFunction((PetscObject)pc,"PCBDDCSetNeumannBoundariesLocal_C",NULL);CHKERRQ(ierr); 2134 ierr = PetscObjectComposeFunction((PetscObject)pc,"PCBDDCGetDirichletBoundaries_C",NULL);CHKERRQ(ierr); 2135 ierr = PetscObjectComposeFunction((PetscObject)pc,"PCBDDCGetDirichletBoundariesLocal_C",NULL);CHKERRQ(ierr); 2136 ierr = PetscObjectComposeFunction((PetscObject)pc,"PCBDDCGetNeumannBoundaries_C",NULL);CHKERRQ(ierr); 2137 ierr = PetscObjectComposeFunction((PetscObject)pc,"PCBDDCGetNeumannBoundariesLocal_C",NULL);CHKERRQ(ierr); 2138 ierr = PetscObjectComposeFunction((PetscObject)pc,"PCBDDCSetDofsSplitting_C",NULL);CHKERRQ(ierr); 2139 ierr = PetscObjectComposeFunction((PetscObject)pc,"PCBDDCSetDofsSplittingLocal_C",NULL);CHKERRQ(ierr); 2140 ierr = PetscObjectComposeFunction((PetscObject)pc,"PCBDDCSetLocalAdjacencyGraph_C",NULL);CHKERRQ(ierr); 2141 ierr = PetscObjectComposeFunction((PetscObject)pc,"PCBDDCCreateFETIDPOperators_C",NULL);CHKERRQ(ierr); 2142 ierr = PetscObjectComposeFunction((PetscObject)pc,"PCBDDCMatFETIDPGetRHS_C",NULL);CHKERRQ(ierr); 2143 ierr = PetscObjectComposeFunction((PetscObject)pc,"PCBDDCMatFETIDPGetSolution_C",NULL);CHKERRQ(ierr); 2144 ierr = PetscObjectComposeFunction((PetscObject)pc,"PCPreSolveChangeRHS_C",NULL);CHKERRQ(ierr); 2145 ierr = PetscObjectComposeFunction((PetscObject)pc,"PCSetCoordinates_C",NULL);CHKERRQ(ierr); 2146 ierr = PetscFree(pc->data);CHKERRQ(ierr); 2147 PetscFunctionReturn(0); 2148 } 2149 2150 static PetscErrorCode PCSetCoordinates_BDDC(PC pc, PetscInt dim, PetscInt nloc, PetscReal *coords) 2151 { 2152 PC_BDDC *pcbddc = (PC_BDDC*)pc->data; 2153 PCBDDCGraph mat_graph = pcbddc->mat_graph; 2154 PetscErrorCode ierr; 2155 2156 PetscFunctionBegin; 2157 ierr = PetscFree(mat_graph->coords);CHKERRQ(ierr); 2158 ierr = PetscMalloc1(nloc*dim,&mat_graph->coords);CHKERRQ(ierr); 2159 ierr = PetscMemcpy(mat_graph->coords,coords,nloc*dim*sizeof(PetscReal));CHKERRQ(ierr); 2160 mat_graph->cnloc = nloc; 2161 mat_graph->cdim = dim; 2162 mat_graph->cloc = PETSC_FALSE; 2163 PetscFunctionReturn(0); 2164 } 2165 2166 static PetscErrorCode PCPreSolveChangeRHS_BDDC(PC pc, PetscBool* change) 2167 { 2168 PetscFunctionBegin; 2169 *change = PETSC_TRUE; 2170 PetscFunctionReturn(0); 2171 } 2172 2173 static PetscErrorCode PCBDDCMatFETIDPGetRHS_BDDC(Mat fetidp_mat, Vec standard_rhs, Vec fetidp_flux_rhs) 2174 { 2175 FETIDPMat_ctx mat_ctx; 2176 Vec work; 2177 PC_IS* pcis; 2178 PC_BDDC* pcbddc; 2179 PetscErrorCode ierr; 2180 2181 PetscFunctionBegin; 2182 ierr = MatShellGetContext(fetidp_mat,&mat_ctx);CHKERRQ(ierr); 2183 pcis = (PC_IS*)mat_ctx->pc->data; 2184 pcbddc = (PC_BDDC*)mat_ctx->pc->data; 2185 2186 ierr = VecSet(fetidp_flux_rhs,0.0);CHKERRQ(ierr); 2187 /* copy rhs since we may change it during PCPreSolve_BDDC */ 2188 if (!pcbddc->original_rhs) { 2189 ierr = VecDuplicate(pcis->vec1_global,&pcbddc->original_rhs);CHKERRQ(ierr); 2190 } 2191 if (mat_ctx->rhs_flip) { 2192 ierr = VecPointwiseMult(pcbddc->original_rhs,standard_rhs,mat_ctx->rhs_flip);CHKERRQ(ierr); 2193 } else { 2194 ierr = VecCopy(standard_rhs,pcbddc->original_rhs);CHKERRQ(ierr); 2195 } 2196 if (mat_ctx->g2g_p) { 2197 /* interface pressure rhs */ 2198 ierr = VecScatterBegin(mat_ctx->g2g_p,fetidp_flux_rhs,pcbddc->original_rhs,INSERT_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 2199 ierr = VecScatterEnd(mat_ctx->g2g_p,fetidp_flux_rhs,pcbddc->original_rhs,INSERT_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 2200 ierr = VecScatterBegin(mat_ctx->g2g_p,standard_rhs,fetidp_flux_rhs,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2201 ierr = VecScatterEnd(mat_ctx->g2g_p,standard_rhs,fetidp_flux_rhs,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2202 if (!mat_ctx->rhs_flip) { 2203 ierr = VecScale(fetidp_flux_rhs,-1.);CHKERRQ(ierr); 2204 } 2205 } 2206 /* 2207 change of basis for physical rhs if needed 2208 It also changes the rhs in case of dirichlet boundaries 2209 */ 2210 ierr = PCPreSolve_BDDC(mat_ctx->pc,NULL,pcbddc->original_rhs,NULL);CHKERRQ(ierr); 2211 if (pcbddc->ChangeOfBasisMatrix) { 2212 ierr = MatMultTranspose(pcbddc->ChangeOfBasisMatrix,pcbddc->original_rhs,pcbddc->work_change);CHKERRQ(ierr); 2213 work = pcbddc->work_change; 2214 } else { 2215 work = pcbddc->original_rhs; 2216 } 2217 /* store vectors for computation of fetidp final solution */ 2218 ierr = VecScatterBegin(pcis->global_to_D,work,mat_ctx->temp_solution_D,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2219 ierr = VecScatterEnd(pcis->global_to_D,work,mat_ctx->temp_solution_D,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2220 /* scale rhs since it should be unassembled */ 2221 /* TODO use counter scaling? (also below) */ 2222 ierr = VecScatterBegin(pcis->global_to_B,work,mat_ctx->temp_solution_B,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2223 ierr = VecScatterEnd(pcis->global_to_B,work,mat_ctx->temp_solution_B,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2224 /* Apply partition of unity */ 2225 ierr = VecPointwiseMult(mat_ctx->temp_solution_B,pcis->D,mat_ctx->temp_solution_B);CHKERRQ(ierr); 2226 /* ierr = PCBDDCScalingRestriction(mat_ctx->pc,work,mat_ctx->temp_solution_B);CHKERRQ(ierr); */ 2227 if (!pcbddc->switch_static) { 2228 /* compute partially subassembled Schur complement right-hand side */ 2229 ierr = KSPSolve(pcbddc->ksp_D,mat_ctx->temp_solution_D,pcis->vec1_D);CHKERRQ(ierr); 2230 ierr = MatMult(pcis->A_BI,pcis->vec1_D,pcis->vec1_B);CHKERRQ(ierr); 2231 ierr = VecAXPY(mat_ctx->temp_solution_B,-1.0,pcis->vec1_B);CHKERRQ(ierr); 2232 ierr = VecSet(work,0.0);CHKERRQ(ierr); 2233 ierr = VecScatterBegin(pcis->global_to_B,mat_ctx->temp_solution_B,work,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 2234 ierr = VecScatterEnd(pcis->global_to_B,mat_ctx->temp_solution_B,work,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 2235 /* ierr = PCBDDCScalingRestriction(mat_ctx->pc,work,mat_ctx->temp_solution_B);CHKERRQ(ierr); */ 2236 ierr = VecScatterBegin(pcis->global_to_B,work,mat_ctx->temp_solution_B,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2237 ierr = VecScatterEnd(pcis->global_to_B,work,mat_ctx->temp_solution_B,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2238 ierr = VecPointwiseMult(mat_ctx->temp_solution_B,pcis->D,mat_ctx->temp_solution_B);CHKERRQ(ierr); 2239 } 2240 /* BDDC rhs */ 2241 ierr = VecCopy(mat_ctx->temp_solution_B,pcis->vec1_B);CHKERRQ(ierr); 2242 if (pcbddc->switch_static) { 2243 ierr = VecCopy(mat_ctx->temp_solution_D,pcis->vec1_D);CHKERRQ(ierr); 2244 } 2245 /* apply BDDC */ 2246 ierr = PetscMemzero(pcbddc->benign_p0,pcbddc->benign_n*sizeof(PetscScalar));CHKERRQ(ierr); 2247 ierr = PCBDDCApplyInterfacePreconditioner(mat_ctx->pc,PETSC_FALSE);CHKERRQ(ierr); 2248 ierr = PetscMemzero(pcbddc->benign_p0,pcbddc->benign_n*sizeof(PetscScalar));CHKERRQ(ierr); 2249 2250 /* Application of B_delta and assembling of rhs for fetidp fluxes */ 2251 ierr = MatMult(mat_ctx->B_delta,pcis->vec1_B,mat_ctx->lambda_local);CHKERRQ(ierr); 2252 ierr = VecScatterBegin(mat_ctx->l2g_lambda,mat_ctx->lambda_local,fetidp_flux_rhs,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2253 ierr = VecScatterEnd(mat_ctx->l2g_lambda,mat_ctx->lambda_local,fetidp_flux_rhs,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2254 /* Add contribution to interface pressures */ 2255 if (mat_ctx->l2g_p) { 2256 ierr = MatMult(mat_ctx->B_BB,pcis->vec1_B,mat_ctx->vP);CHKERRQ(ierr); 2257 if (pcbddc->switch_static) { 2258 ierr = MatMultAdd(mat_ctx->B_BI,pcis->vec1_D,mat_ctx->vP,mat_ctx->vP);CHKERRQ(ierr); 2259 } 2260 ierr = VecScatterBegin(mat_ctx->l2g_p,mat_ctx->vP,fetidp_flux_rhs,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2261 ierr = VecScatterEnd(mat_ctx->l2g_p,mat_ctx->vP,fetidp_flux_rhs,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2262 } 2263 PetscFunctionReturn(0); 2264 } 2265 2266 /*@ 2267 PCBDDCMatFETIDPGetRHS - Compute the right-hand side for FETI-DP linear system using the physical right-hand side 2268 2269 Collective 2270 2271 Input Parameters: 2272 + fetidp_mat - the FETI-DP matrix object obtained by a call to PCBDDCCreateFETIDPOperators 2273 - standard_rhs - the right-hand side of the original linear system 2274 2275 Output Parameters: 2276 . fetidp_flux_rhs - the right-hand side for the FETI-DP linear system 2277 2278 Level: developer 2279 2280 Notes: 2281 2282 .seealso: PCBDDC, PCBDDCCreateFETIDPOperators, PCBDDCMatFETIDPGetSolution 2283 @*/ 2284 PetscErrorCode PCBDDCMatFETIDPGetRHS(Mat fetidp_mat, Vec standard_rhs, Vec fetidp_flux_rhs) 2285 { 2286 FETIDPMat_ctx mat_ctx; 2287 PetscErrorCode ierr; 2288 2289 PetscFunctionBegin; 2290 PetscValidHeaderSpecific(fetidp_mat,MAT_CLASSID,1); 2291 PetscValidHeaderSpecific(standard_rhs,VEC_CLASSID,2); 2292 PetscValidHeaderSpecific(fetidp_flux_rhs,VEC_CLASSID,3); 2293 ierr = MatShellGetContext(fetidp_mat,&mat_ctx);CHKERRQ(ierr); 2294 ierr = PetscUseMethod(mat_ctx->pc,"PCBDDCMatFETIDPGetRHS_C",(Mat,Vec,Vec),(fetidp_mat,standard_rhs,fetidp_flux_rhs));CHKERRQ(ierr); 2295 PetscFunctionReturn(0); 2296 } 2297 2298 static PetscErrorCode PCBDDCMatFETIDPGetSolution_BDDC(Mat fetidp_mat, Vec fetidp_flux_sol, Vec standard_sol) 2299 { 2300 FETIDPMat_ctx mat_ctx; 2301 PC_IS* pcis; 2302 PC_BDDC* pcbddc; 2303 PetscErrorCode ierr; 2304 Vec work; 2305 2306 PetscFunctionBegin; 2307 ierr = MatShellGetContext(fetidp_mat,&mat_ctx);CHKERRQ(ierr); 2308 pcis = (PC_IS*)mat_ctx->pc->data; 2309 pcbddc = (PC_BDDC*)mat_ctx->pc->data; 2310 2311 /* apply B_delta^T */ 2312 ierr = VecSet(pcis->vec1_B,0.);CHKERRQ(ierr); 2313 ierr = VecScatterBegin(mat_ctx->l2g_lambda,fetidp_flux_sol,mat_ctx->lambda_local,INSERT_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 2314 ierr = VecScatterEnd(mat_ctx->l2g_lambda,fetidp_flux_sol,mat_ctx->lambda_local,INSERT_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 2315 ierr = MatMultTranspose(mat_ctx->B_delta,mat_ctx->lambda_local,pcis->vec1_B);CHKERRQ(ierr); 2316 if (mat_ctx->l2g_p) { 2317 ierr = VecScatterBegin(mat_ctx->l2g_p,fetidp_flux_sol,mat_ctx->vP,INSERT_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 2318 ierr = VecScatterEnd(mat_ctx->l2g_p,fetidp_flux_sol,mat_ctx->vP,INSERT_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 2319 ierr = MatMultAdd(mat_ctx->Bt_BB,mat_ctx->vP,pcis->vec1_B,pcis->vec1_B);CHKERRQ(ierr); 2320 } 2321 2322 /* compute rhs for BDDC application */ 2323 ierr = VecAYPX(pcis->vec1_B,-1.0,mat_ctx->temp_solution_B);CHKERRQ(ierr); 2324 if (pcbddc->switch_static) { 2325 ierr = VecCopy(mat_ctx->temp_solution_D,pcis->vec1_D);CHKERRQ(ierr); 2326 if (mat_ctx->l2g_p) { 2327 ierr = VecScale(mat_ctx->vP,-1.);CHKERRQ(ierr); 2328 ierr = MatMultAdd(mat_ctx->Bt_BI,mat_ctx->vP,pcis->vec1_D,pcis->vec1_D);CHKERRQ(ierr); 2329 } 2330 } 2331 2332 /* apply BDDC */ 2333 ierr = PetscMemzero(pcbddc->benign_p0,pcbddc->benign_n*sizeof(PetscScalar));CHKERRQ(ierr); 2334 ierr = PCBDDCApplyInterfacePreconditioner(mat_ctx->pc,PETSC_FALSE);CHKERRQ(ierr); 2335 2336 /* put values into global vector */ 2337 if (pcbddc->ChangeOfBasisMatrix) work = pcbddc->work_change; 2338 else work = standard_sol; 2339 ierr = VecScatterBegin(pcis->global_to_B,pcis->vec1_B,work,INSERT_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 2340 ierr = VecScatterEnd(pcis->global_to_B,pcis->vec1_B,work,INSERT_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 2341 if (!pcbddc->switch_static) { 2342 /* compute values into the interior if solved for the partially subassembled Schur complement */ 2343 ierr = MatMult(pcis->A_IB,pcis->vec1_B,pcis->vec1_D);CHKERRQ(ierr); 2344 ierr = VecAYPX(pcis->vec1_D,-1.0,mat_ctx->temp_solution_D);CHKERRQ(ierr); 2345 ierr = KSPSolve(pcbddc->ksp_D,pcis->vec1_D,pcis->vec1_D);CHKERRQ(ierr); 2346 } 2347 2348 ierr = VecScatterBegin(pcis->global_to_D,pcis->vec1_D,work,INSERT_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 2349 ierr = VecScatterEnd(pcis->global_to_D,pcis->vec1_D,work,INSERT_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 2350 /* add p0 solution to final solution */ 2351 ierr = PCBDDCBenignGetOrSetP0(mat_ctx->pc,work,PETSC_FALSE);CHKERRQ(ierr); 2352 if (pcbddc->ChangeOfBasisMatrix) { 2353 ierr = MatMult(pcbddc->ChangeOfBasisMatrix,work,standard_sol);CHKERRQ(ierr); 2354 } 2355 ierr = PCPostSolve_BDDC(mat_ctx->pc,NULL,NULL,standard_sol);CHKERRQ(ierr); 2356 if (mat_ctx->g2g_p) { 2357 ierr = VecScatterBegin(mat_ctx->g2g_p,fetidp_flux_sol,standard_sol,INSERT_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 2358 ierr = VecScatterEnd(mat_ctx->g2g_p,fetidp_flux_sol,standard_sol,INSERT_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 2359 } 2360 PetscFunctionReturn(0); 2361 } 2362 2363 /*@ 2364 PCBDDCMatFETIDPGetSolution - Compute the physical solution using the solution of the FETI-DP linear system 2365 2366 Collective 2367 2368 Input Parameters: 2369 + fetidp_mat - the FETI-DP matrix obtained by a call to PCBDDCCreateFETIDPOperators 2370 - fetidp_flux_sol - the solution of the FETI-DP linear system 2371 2372 Output Parameters: 2373 . standard_sol - the solution defined on the physical domain 2374 2375 Level: developer 2376 2377 Notes: 2378 2379 .seealso: PCBDDC, PCBDDCCreateFETIDPOperators, PCBDDCMatFETIDPGetRHS 2380 @*/ 2381 PetscErrorCode PCBDDCMatFETIDPGetSolution(Mat fetidp_mat, Vec fetidp_flux_sol, Vec standard_sol) 2382 { 2383 FETIDPMat_ctx mat_ctx; 2384 PetscErrorCode ierr; 2385 2386 PetscFunctionBegin; 2387 PetscValidHeaderSpecific(fetidp_mat,MAT_CLASSID,1); 2388 PetscValidHeaderSpecific(fetidp_flux_sol,VEC_CLASSID,2); 2389 PetscValidHeaderSpecific(standard_sol,VEC_CLASSID,3); 2390 ierr = MatShellGetContext(fetidp_mat,&mat_ctx);CHKERRQ(ierr); 2391 ierr = PetscUseMethod(mat_ctx->pc,"PCBDDCMatFETIDPGetSolution_C",(Mat,Vec,Vec),(fetidp_mat,fetidp_flux_sol,standard_sol));CHKERRQ(ierr); 2392 PetscFunctionReturn(0); 2393 } 2394 2395 static PetscErrorCode PCBDDCCreateFETIDPOperators_BDDC(PC pc, PetscBool fully_redundant, const char* prefix, Mat *fetidp_mat, PC *fetidp_pc) 2396 { 2397 2398 FETIDPMat_ctx fetidpmat_ctx; 2399 Mat newmat; 2400 FETIDPPC_ctx fetidppc_ctx; 2401 PC newpc; 2402 MPI_Comm comm; 2403 PetscErrorCode ierr; 2404 2405 PetscFunctionBegin; 2406 ierr = PetscObjectGetComm((PetscObject)pc,&comm);CHKERRQ(ierr); 2407 /* FETIDP linear matrix */ 2408 ierr = PCBDDCCreateFETIDPMatContext(pc,&fetidpmat_ctx);CHKERRQ(ierr); 2409 fetidpmat_ctx->fully_redundant = fully_redundant; 2410 ierr = PCBDDCSetupFETIDPMatContext(fetidpmat_ctx);CHKERRQ(ierr); 2411 ierr = MatCreateShell(comm,fetidpmat_ctx->n,fetidpmat_ctx->n,fetidpmat_ctx->N,fetidpmat_ctx->N,fetidpmat_ctx,&newmat);CHKERRQ(ierr); 2412 ierr = MatShellSetOperation(newmat,MATOP_MULT,(void (*)(void))FETIDPMatMult);CHKERRQ(ierr); 2413 ierr = MatShellSetOperation(newmat,MATOP_MULT_TRANSPOSE,(void (*)(void))FETIDPMatMultTranspose);CHKERRQ(ierr); 2414 ierr = MatShellSetOperation(newmat,MATOP_DESTROY,(void (*)(void))PCBDDCDestroyFETIDPMat);CHKERRQ(ierr); 2415 ierr = MatSetOptionsPrefix(newmat,prefix);CHKERRQ(ierr); 2416 ierr = MatAppendOptionsPrefix(newmat,"fetidp_");CHKERRQ(ierr); 2417 ierr = MatSetUp(newmat);CHKERRQ(ierr); 2418 /* FETIDP preconditioner */ 2419 ierr = PCBDDCCreateFETIDPPCContext(pc,&fetidppc_ctx);CHKERRQ(ierr); 2420 ierr = PCBDDCSetupFETIDPPCContext(newmat,fetidppc_ctx);CHKERRQ(ierr); 2421 ierr = PCCreate(comm,&newpc);CHKERRQ(ierr); 2422 ierr = PCSetOperators(newpc,newmat,newmat);CHKERRQ(ierr); 2423 ierr = PCSetOptionsPrefix(newpc,prefix);CHKERRQ(ierr); 2424 ierr = PCAppendOptionsPrefix(newpc,"fetidp_");CHKERRQ(ierr); 2425 if (!fetidpmat_ctx->l2g_lambda_only) { 2426 ierr = PCSetType(newpc,PCSHELL);CHKERRQ(ierr); 2427 ierr = PCShellSetContext(newpc,fetidppc_ctx);CHKERRQ(ierr); 2428 ierr = PCShellSetApply(newpc,FETIDPPCApply);CHKERRQ(ierr); 2429 ierr = PCShellSetApplyTranspose(newpc,FETIDPPCApplyTranspose);CHKERRQ(ierr); 2430 ierr = PCShellSetView(newpc,FETIDPPCView);CHKERRQ(ierr); 2431 ierr = PCShellSetDestroy(newpc,PCBDDCDestroyFETIDPPC);CHKERRQ(ierr); 2432 } else { 2433 KSP *ksps; 2434 PC lagpc; 2435 Mat M,AM,PM; 2436 PetscInt nn; 2437 2438 ierr = PetscObjectQuery((PetscObject)pc,"__KSPFETIDP_PPmat",(PetscObject*)&M);CHKERRQ(ierr); 2439 ierr = PCSetType(newpc,PCFIELDSPLIT);CHKERRQ(ierr); 2440 ierr = PCFieldSplitSetIS(newpc,"lag",fetidpmat_ctx->lagrange);CHKERRQ(ierr); 2441 ierr = PCFieldSplitSetIS(newpc,"p",fetidpmat_ctx->pressure);CHKERRQ(ierr); 2442 ierr = PCFieldSplitSetType(newpc,PC_COMPOSITE_SCHUR);CHKERRQ(ierr); 2443 ierr = PCFieldSplitSetSchurFactType(newpc,PC_FIELDSPLIT_SCHUR_FACT_DIAG);CHKERRQ(ierr); 2444 ierr = PCFieldSplitSetSchurPre(newpc,PC_FIELDSPLIT_SCHUR_PRE_USER,M);CHKERRQ(ierr); 2445 ierr = PCFieldSplitSetSchurScale(newpc,1.0);CHKERRQ(ierr); 2446 ierr = PCSetFromOptions(newpc);CHKERRQ(ierr); 2447 ierr = PCSetUp(newpc);CHKERRQ(ierr); 2448 2449 /* set the solver for the (0,0) block */ 2450 ierr = PCFieldSplitGetSubKSP(newpc,&nn,&ksps);CHKERRQ(ierr); 2451 ierr = PCCreate(comm,&lagpc);CHKERRQ(ierr); 2452 ierr = PCSetType(lagpc,PCSHELL);CHKERRQ(ierr); 2453 ierr = KSPGetOperators(ksps[0],&AM,&PM);CHKERRQ(ierr); 2454 ierr = PCSetOperators(lagpc,AM,PM);CHKERRQ(ierr); 2455 ierr = PCShellSetContext(lagpc,fetidppc_ctx);CHKERRQ(ierr); 2456 ierr = PCShellSetApply(lagpc,FETIDPPCApply);CHKERRQ(ierr); 2457 ierr = PCShellSetApplyTranspose(lagpc,FETIDPPCApplyTranspose);CHKERRQ(ierr); 2458 ierr = PCShellSetView(lagpc,FETIDPPCView);CHKERRQ(ierr); 2459 ierr = PCShellSetDestroy(lagpc,PCBDDCDestroyFETIDPPC);CHKERRQ(ierr); 2460 ierr = KSPSetPC(ksps[0],lagpc);CHKERRQ(ierr); 2461 ierr = PCDestroy(&lagpc);CHKERRQ(ierr); 2462 ierr = PetscFree(ksps);CHKERRQ(ierr); 2463 } 2464 /* return pointers for objects created */ 2465 *fetidp_mat = newmat; 2466 *fetidp_pc = newpc; 2467 PetscFunctionReturn(0); 2468 } 2469 2470 /*@C 2471 PCBDDCCreateFETIDPOperators - Create FETI-DP operators 2472 2473 Collective 2474 2475 Input Parameters: 2476 + pc - the BDDC preconditioning context (setup should have been called before) 2477 . fully_redundant - true for a fully redundant set of Lagrange multipliers 2478 - prefix - optional options database prefix for the objects to be created (can be NULL) 2479 2480 Output Parameters: 2481 + fetidp_mat - shell FETI-DP matrix object 2482 - fetidp_pc - shell Dirichlet preconditioner for FETI-DP matrix 2483 2484 Level: developer 2485 2486 Notes: 2487 Currently the only operations provided for FETI-DP matrix are MatMult and MatMultTranspose 2488 2489 .seealso: PCBDDC, PCBDDCMatFETIDPGetRHS, PCBDDCMatFETIDPGetSolution 2490 @*/ 2491 PetscErrorCode PCBDDCCreateFETIDPOperators(PC pc, PetscBool fully_redundant, const char *prefix, Mat *fetidp_mat, PC *fetidp_pc) 2492 { 2493 PetscErrorCode ierr; 2494 2495 PetscFunctionBegin; 2496 PetscValidHeaderSpecific(pc,PC_CLASSID,1); 2497 if (pc->setupcalled) { 2498 ierr = PetscUseMethod(pc,"PCBDDCCreateFETIDPOperators_C",(PC,PetscBool,const char*,Mat*,PC*),(pc,fully_redundant,prefix,fetidp_mat,fetidp_pc));CHKERRQ(ierr); 2499 } else SETERRQ(PetscObjectComm((PetscObject)pc),PETSC_ERR_SUP,"You must call PCSetup_BDDC() first \n"); 2500 PetscFunctionReturn(0); 2501 } 2502 /* -------------------------------------------------------------------------- */ 2503 /*MC 2504 PCBDDC - Balancing Domain Decomposition by Constraints. 2505 2506 An implementation of the BDDC preconditioner based on 2507 2508 .vb 2509 [1] C. R. Dohrmann. "An approximate BDDC preconditioner", Numerical Linear Algebra with Applications Volume 14, Issue 2, pages 149-168, March 2007 2510 [2] A. Klawonn and O. B. Widlund. "Dual-Primal FETI Methods for Linear Elasticity", http://cs.nyu.edu/csweb/Research/TechReports/TR2004-855/TR2004-855.pdf 2511 [3] J. Mandel, B. Sousedik, C. R. Dohrmann. "Multispace and Multilevel BDDC", http://arxiv.org/abs/0712.3977 2512 [4] C. Pechstein and C. R. Dohrmann. "Modern domain decomposition methods BDDC, deluxe scaling, and an algebraic approach", Seminar talk, Linz, December 2013, http://people.ricam.oeaw.ac.at/c.pechstein/pechstein-bddc2013.pdf 2513 .ve 2514 2515 The matrix to be preconditioned (Pmat) must be of type MATIS. 2516 2517 Currently works with MATIS matrices with local matrices of type MATSEQAIJ, MATSEQBAIJ or MATSEQSBAIJ, either with real or complex numbers. 2518 2519 It also works with unsymmetric and indefinite problems. 2520 2521 Unlike 'conventional' interface preconditioners, PCBDDC iterates over all degrees of freedom, not just those on the interface. This allows the use of approximate solvers on the subdomains. 2522 2523 Approximate local solvers are automatically adapted (see [1]) if the user has attached a nullspace object to the subdomain matrices, and informed BDDC of using approximate solvers (via the command line). 2524 2525 Boundary nodes are split in vertices, edges and faces classes using information from the local to global mapping of dofs and the local connectivity graph of nodes. The latter can be customized by using PCBDDCSetLocalAdjacencyGraph() 2526 Additional information on dofs can be provided by using PCBDDCSetDofsSplitting(), PCBDDCSetDirichletBoundaries(), PCBDDCSetNeumannBoundaries(), and PCBDDCSetPrimalVerticesIS() and their local counterparts. 2527 2528 Constraints can be customized by attaching a MatNullSpace object to the MATIS matrix via MatSetNearNullSpace(). Non-singular modes are retained via SVD. 2529 2530 Change of basis is performed similarly to [2] when requested. When more than one constraint is present on a single connected component (i.e. an edge or a face), a robust method based on local QR factorizations is used. 2531 User defined change of basis can be passed to PCBDDC by using PCBDDCSetChangeOfBasisMat() 2532 2533 The PETSc implementation also supports multilevel BDDC [3]. Coarse grids are partitioned using a MatPartitioning object. 2534 2535 Adaptive selection of primal constraints [4] is supported for SPD systems with high-contrast in the coefficients if MUMPS or MKL_PARDISO are present. Future versions of the code will also consider using PASTIX. 2536 2537 An experimental interface to the FETI-DP method is available. FETI-DP operators could be created using PCBDDCCreateFETIDPOperators(). A stand-alone class for the FETI-DP method will be provided in the next releases. 2538 Deluxe scaling is not supported yet for FETI-DP. 2539 2540 Options Database Keys (some of them, run with -h for a complete list): 2541 2542 . -pc_bddc_use_vertices <true> - use or not vertices in primal space 2543 . -pc_bddc_use_edges <true> - use or not edges in primal space 2544 . -pc_bddc_use_faces <false> - use or not faces in primal space 2545 . -pc_bddc_symmetric <true> - symmetric computation of primal basis functions. Specify false for unsymmetric problems 2546 . -pc_bddc_use_change_of_basis <false> - use change of basis approach (on edges only) 2547 . -pc_bddc_use_change_on_faces <false> - use change of basis approach on faces if change of basis has been requested 2548 . -pc_bddc_switch_static <false> - switches from M_2 (default) to M_3 operator (see reference article [1]) 2549 . -pc_bddc_levels <0> - maximum number of levels for multilevel 2550 . -pc_bddc_coarsening_ratio <8> - number of subdomains which will be aggregated together at the coarser level (e.g. H/h ratio at the coarser level, significative only in the multilevel case) 2551 . -pc_bddc_coarse_redistribute <0> - size of a subset of processors where the coarse problem will be remapped (the value is ignored if not at the coarsest level) 2552 . -pc_bddc_use_deluxe_scaling <false> - use deluxe scaling 2553 . -pc_bddc_schur_layers <-1> - select the economic version of deluxe scaling by specifying the number of layers (-1 corresponds to the original deluxe scaling) 2554 . -pc_bddc_adaptive_threshold <0.0> - when a value different than zero is specified, adaptive selection of constraints is performed on edges and faces (requires deluxe scaling and MUMPS or MKL_PARDISO installed) 2555 - -pc_bddc_check_level <0> - set verbosity level of debugging output 2556 2557 Options for Dirichlet, Neumann or coarse solver can be set with 2558 .vb 2559 -pc_bddc_dirichlet_ 2560 -pc_bddc_neumann_ 2561 -pc_bddc_coarse_ 2562 .ve 2563 e.g -pc_bddc_dirichlet_ksp_type richardson -pc_bddc_dirichlet_pc_type gamg. PCBDDC uses by default KPSPREONLY and PCLU. 2564 2565 When using a multilevel approach, solvers' options at the N-th level (N > 1) can be specified as 2566 .vb 2567 -pc_bddc_dirichlet_lN_ 2568 -pc_bddc_neumann_lN_ 2569 -pc_bddc_coarse_lN_ 2570 .ve 2571 Note that level number ranges from the finest (0) to the coarsest (N). 2572 In order to specify options for the BDDC operators at the coarser levels (and not for the solvers), prepend -pc_bddc_coarse_ or -pc_bddc_coarse_l to the option, e.g. 2573 .vb 2574 -pc_bddc_coarse_pc_bddc_adaptive_threshold 5 -pc_bddc_coarse_l1_pc_bddc_redistribute 3 2575 .ve 2576 will use a threshold of 5 for constraints' selection at the first coarse level and will redistribute the coarse problem of the first coarse level on 3 processors 2577 2578 Level: intermediate 2579 2580 Developer Notes: 2581 2582 Contributed by Stefano Zampini 2583 2584 .seealso: PCCreate(), PCSetType(), PCType (for list of available types), PC, MATIS 2585 M*/ 2586 2587 PETSC_EXTERN PetscErrorCode PCCreate_BDDC(PC pc) 2588 { 2589 PetscErrorCode ierr; 2590 PC_BDDC *pcbddc; 2591 2592 PetscFunctionBegin; 2593 ierr = PetscNewLog(pc,&pcbddc);CHKERRQ(ierr); 2594 pc->data = (void*)pcbddc; 2595 2596 /* create PCIS data structure */ 2597 ierr = PCISCreate(pc);CHKERRQ(ierr); 2598 2599 /* create local graph structure */ 2600 ierr = PCBDDCGraphCreate(&pcbddc->mat_graph);CHKERRQ(ierr); 2601 2602 /* BDDC nonzero defaults */ 2603 pcbddc->use_local_adj = PETSC_TRUE; 2604 pcbddc->use_vertices = PETSC_TRUE; 2605 pcbddc->use_edges = PETSC_TRUE; 2606 pcbddc->symmetric_primal = PETSC_TRUE; 2607 pcbddc->vertex_size = 1; 2608 pcbddc->recompute_topography = PETSC_TRUE; 2609 pcbddc->coarse_size = -1; 2610 pcbddc->use_exact_dirichlet_trick = PETSC_TRUE; 2611 pcbddc->coarsening_ratio = 8; 2612 pcbddc->coarse_eqs_per_proc = 1; 2613 pcbddc->benign_compute_correction = PETSC_TRUE; 2614 pcbddc->nedfield = -1; 2615 pcbddc->nedglobal = PETSC_TRUE; 2616 pcbddc->graphmaxcount = PETSC_MAX_INT; 2617 pcbddc->sub_schurs_layers = -1; 2618 pcbddc->adaptive_threshold[0] = 0.0; 2619 pcbddc->adaptive_threshold[1] = 0.0; 2620 2621 /* function pointers */ 2622 pc->ops->apply = PCApply_BDDC; 2623 pc->ops->applytranspose = PCApplyTranspose_BDDC; 2624 pc->ops->setup = PCSetUp_BDDC; 2625 pc->ops->destroy = PCDestroy_BDDC; 2626 pc->ops->setfromoptions = PCSetFromOptions_BDDC; 2627 pc->ops->view = PCView_BDDC; 2628 pc->ops->applyrichardson = 0; 2629 pc->ops->applysymmetricleft = 0; 2630 pc->ops->applysymmetricright = 0; 2631 pc->ops->presolve = PCPreSolve_BDDC; 2632 pc->ops->postsolve = PCPostSolve_BDDC; 2633 pc->ops->reset = PCReset_BDDC; 2634 2635 /* composing function */ 2636 ierr = PetscObjectComposeFunction((PetscObject)pc,"PCBDDCSetDiscreteGradient_C",PCBDDCSetDiscreteGradient_BDDC);CHKERRQ(ierr); 2637 ierr = PetscObjectComposeFunction((PetscObject)pc,"PCBDDCSetDivergenceMat_C",PCBDDCSetDivergenceMat_BDDC);CHKERRQ(ierr); 2638 ierr = PetscObjectComposeFunction((PetscObject)pc,"PCBDDCSetChangeOfBasisMat_C",PCBDDCSetChangeOfBasisMat_BDDC);CHKERRQ(ierr); 2639 ierr = PetscObjectComposeFunction((PetscObject)pc,"PCBDDCSetPrimalVerticesLocalIS_C",PCBDDCSetPrimalVerticesLocalIS_BDDC);CHKERRQ(ierr); 2640 ierr = PetscObjectComposeFunction((PetscObject)pc,"PCBDDCSetPrimalVerticesIS_C",PCBDDCSetPrimalVerticesIS_BDDC);CHKERRQ(ierr); 2641 ierr = PetscObjectComposeFunction((PetscObject)pc,"PCBDDCSetCoarseningRatio_C",PCBDDCSetCoarseningRatio_BDDC);CHKERRQ(ierr); 2642 ierr = PetscObjectComposeFunction((PetscObject)pc,"PCBDDCSetLevel_C",PCBDDCSetLevel_BDDC);CHKERRQ(ierr); 2643 ierr = PetscObjectComposeFunction((PetscObject)pc,"PCBDDCSetUseExactDirichlet_C",PCBDDCSetUseExactDirichlet_BDDC);CHKERRQ(ierr); 2644 ierr = PetscObjectComposeFunction((PetscObject)pc,"PCBDDCSetLevels_C",PCBDDCSetLevels_BDDC);CHKERRQ(ierr); 2645 ierr = PetscObjectComposeFunction((PetscObject)pc,"PCBDDCSetDirichletBoundaries_C",PCBDDCSetDirichletBoundaries_BDDC);CHKERRQ(ierr); 2646 ierr = PetscObjectComposeFunction((PetscObject)pc,"PCBDDCSetDirichletBoundariesLocal_C",PCBDDCSetDirichletBoundariesLocal_BDDC);CHKERRQ(ierr); 2647 ierr = PetscObjectComposeFunction((PetscObject)pc,"PCBDDCSetNeumannBoundaries_C",PCBDDCSetNeumannBoundaries_BDDC);CHKERRQ(ierr); 2648 ierr = PetscObjectComposeFunction((PetscObject)pc,"PCBDDCSetNeumannBoundariesLocal_C",PCBDDCSetNeumannBoundariesLocal_BDDC);CHKERRQ(ierr); 2649 ierr = PetscObjectComposeFunction((PetscObject)pc,"PCBDDCGetDirichletBoundaries_C",PCBDDCGetDirichletBoundaries_BDDC);CHKERRQ(ierr); 2650 ierr = PetscObjectComposeFunction((PetscObject)pc,"PCBDDCGetDirichletBoundariesLocal_C",PCBDDCGetDirichletBoundariesLocal_BDDC);CHKERRQ(ierr); 2651 ierr = PetscObjectComposeFunction((PetscObject)pc,"PCBDDCGetNeumannBoundaries_C",PCBDDCGetNeumannBoundaries_BDDC);CHKERRQ(ierr); 2652 ierr = PetscObjectComposeFunction((PetscObject)pc,"PCBDDCGetNeumannBoundariesLocal_C",PCBDDCGetNeumannBoundariesLocal_BDDC);CHKERRQ(ierr); 2653 ierr = PetscObjectComposeFunction((PetscObject)pc,"PCBDDCSetDofsSplitting_C",PCBDDCSetDofsSplitting_BDDC);CHKERRQ(ierr); 2654 ierr = PetscObjectComposeFunction((PetscObject)pc,"PCBDDCSetDofsSplittingLocal_C",PCBDDCSetDofsSplittingLocal_BDDC);CHKERRQ(ierr); 2655 ierr = PetscObjectComposeFunction((PetscObject)pc,"PCBDDCSetLocalAdjacencyGraph_C",PCBDDCSetLocalAdjacencyGraph_BDDC);CHKERRQ(ierr); 2656 ierr = PetscObjectComposeFunction((PetscObject)pc,"PCBDDCCreateFETIDPOperators_C",PCBDDCCreateFETIDPOperators_BDDC);CHKERRQ(ierr); 2657 ierr = PetscObjectComposeFunction((PetscObject)pc,"PCBDDCMatFETIDPGetRHS_C",PCBDDCMatFETIDPGetRHS_BDDC);CHKERRQ(ierr); 2658 ierr = PetscObjectComposeFunction((PetscObject)pc,"PCBDDCMatFETIDPGetSolution_C",PCBDDCMatFETIDPGetSolution_BDDC);CHKERRQ(ierr); 2659 ierr = PetscObjectComposeFunction((PetscObject)pc,"PCPreSolveChangeRHS_C",PCPreSolveChangeRHS_BDDC);CHKERRQ(ierr); 2660 ierr = PetscObjectComposeFunction((PetscObject)pc,"PCSetCoordinates_C",PCSetCoordinates_BDDC);CHKERRQ(ierr); 2661 PetscFunctionReturn(0); 2662 } 2663