1 #include <../src/ksp/pc/impls/bddc/bddc.h> 2 #include <../src/ksp/pc/impls/bddc/bddcprivate.h> 3 #include <../src/mat/impls/dense/seq/dense.h> 4 #include <petscblaslapack.h> 5 6 PETSC_STATIC_INLINE PetscErrorCode PCBDDCAdjGetNextLayer_Private(PetscInt*,PetscInt,PetscBT,PetscInt*,PetscInt*,PetscInt*); 7 static PetscErrorCode PCBDDCComputeExplicitSchur(Mat,PetscBool,MatReuse,Mat*); 8 static PetscErrorCode PCBDDCReuseSolvers_Interior(PC,Vec,Vec); 9 static PetscErrorCode PCBDDCReuseSolvers_Correction(PC,Vec,Vec); 10 11 /* if v2 is not present, correction is done in-place */ 12 PetscErrorCode PCBDDCReuseSolversBenignAdapt(PCBDDCReuseSolvers ctx, Vec v, Vec v2, PetscBool sol, PetscBool full) 13 { 14 PetscScalar *array; 15 PetscScalar *array2; 16 PetscErrorCode ierr; 17 18 PetscFunctionBegin; 19 if (!ctx->benign_n) PetscFunctionReturn(0); 20 if (sol && full) { 21 PetscInt n_I,size_schur; 22 23 /* get sizes */ 24 ierr = MatGetSize(ctx->benign_csAIB,&size_schur,NULL);CHKERRQ(ierr); 25 ierr = VecGetSize(v,&n_I);CHKERRQ(ierr); 26 n_I = n_I - size_schur; 27 /* get schur sol from array */ 28 ierr = VecGetArray(v,&array);CHKERRQ(ierr); 29 ierr = VecPlaceArray(ctx->benign_dummy_schur_vec,array+n_I);CHKERRQ(ierr); 30 ierr = VecRestoreArray(v,&array);CHKERRQ(ierr); 31 /* apply interior sol correction */ 32 ierr = MatMultTranspose(ctx->benign_csAIB,ctx->benign_dummy_schur_vec,ctx->benign_corr_work);CHKERRQ(ierr); 33 ierr = VecResetArray(ctx->benign_dummy_schur_vec);CHKERRQ(ierr); 34 ierr = MatMultAdd(ctx->benign_AIIm1ones,ctx->benign_corr_work,v,v);CHKERRQ(ierr); 35 } 36 if (v2) { 37 PetscInt nl; 38 39 ierr = VecGetArrayRead(v,(const PetscScalar**)&array);CHKERRQ(ierr); 40 ierr = VecGetLocalSize(v2,&nl);CHKERRQ(ierr); 41 ierr = VecGetArray(v2,&array2);CHKERRQ(ierr); 42 ierr = PetscMemcpy(array2,array,nl*sizeof(PetscScalar));CHKERRQ(ierr); 43 } else { 44 ierr = VecGetArray(v,&array);CHKERRQ(ierr); 45 array2 = array; 46 } 47 if (!sol) { /* change rhs */ 48 PetscInt n; 49 for (n=0;n<ctx->benign_n;n++) { 50 PetscScalar sum = 0.; 51 const PetscInt *cols; 52 PetscInt nz,i; 53 54 ierr = ISGetLocalSize(ctx->benign_zerodiag_subs[n],&nz);CHKERRQ(ierr); 55 ierr = ISGetIndices(ctx->benign_zerodiag_subs[n],&cols);CHKERRQ(ierr); 56 for (i=0;i<nz-1;i++) sum += array[cols[i]]; 57 #if defined(PETSC_USE_COMPLEX) 58 sum = -(PetscRealPart(sum)/nz + PETSC_i*(PetscImaginaryPart(sum)/nz)); 59 #else 60 sum = -sum/nz; 61 #endif 62 for (i=0;i<nz-1;i++) array2[cols[i]] += sum; 63 ctx->benign_save_vals[n] = array2[cols[nz-1]]; 64 array2[cols[nz-1]] = sum; 65 ierr = ISRestoreIndices(ctx->benign_zerodiag_subs[n],&cols);CHKERRQ(ierr); 66 } 67 } else { 68 PetscInt n; 69 for (n=0;n<ctx->benign_n;n++) { 70 PetscScalar sum = 0.; 71 const PetscInt *cols; 72 PetscInt nz,i; 73 ierr = ISGetLocalSize(ctx->benign_zerodiag_subs[n],&nz);CHKERRQ(ierr); 74 ierr = ISGetIndices(ctx->benign_zerodiag_subs[n],&cols);CHKERRQ(ierr); 75 for (i=0;i<nz-1;i++) sum += array[cols[i]]; 76 #if defined(PETSC_USE_COMPLEX) 77 sum = -(PetscRealPart(sum)/nz + PETSC_i*(PetscImaginaryPart(sum)/nz)); 78 #else 79 sum = -sum/nz; 80 #endif 81 for (i=0;i<nz-1;i++) array2[cols[i]] += sum; 82 array2[cols[nz-1]] = ctx->benign_save_vals[n]; 83 ierr = ISRestoreIndices(ctx->benign_zerodiag_subs[n],&cols);CHKERRQ(ierr); 84 } 85 } 86 if (v2) { 87 ierr = VecRestoreArrayRead(v,(const PetscScalar**)&array);CHKERRQ(ierr); 88 ierr = VecRestoreArray(v2,&array2);CHKERRQ(ierr); 89 } else { 90 ierr = VecRestoreArray(v,&array);CHKERRQ(ierr); 91 } 92 if (!sol && full) { 93 Vec usedv; 94 PetscInt n_I,size_schur; 95 96 /* get sizes */ 97 ierr = MatGetSize(ctx->benign_csAIB,&size_schur,NULL);CHKERRQ(ierr); 98 ierr = VecGetSize(v,&n_I);CHKERRQ(ierr); 99 n_I = n_I - size_schur; 100 /* compute schur rhs correction */ 101 if (v2) { 102 usedv = v2; 103 } else { 104 usedv = v; 105 } 106 /* apply schur rhs correction */ 107 ierr = MatMultTranspose(ctx->benign_AIIm1ones,usedv,ctx->benign_corr_work);CHKERRQ(ierr); 108 ierr = VecGetArrayRead(usedv,(const PetscScalar**)&array);CHKERRQ(ierr); 109 ierr = VecPlaceArray(ctx->benign_dummy_schur_vec,array+n_I);CHKERRQ(ierr); 110 ierr = VecRestoreArrayRead(usedv,(const PetscScalar**)&array);CHKERRQ(ierr); 111 ierr = MatMultAdd(ctx->benign_csAIB,ctx->benign_corr_work,ctx->benign_dummy_schur_vec,ctx->benign_dummy_schur_vec);CHKERRQ(ierr); 112 ierr = VecResetArray(ctx->benign_dummy_schur_vec);CHKERRQ(ierr); 113 } 114 PetscFunctionReturn(0); 115 } 116 117 static PetscErrorCode PCBDDCReuseSolvers_Solve_Private(PC pc, Vec rhs, Vec sol, PetscBool transpose, PetscBool full) 118 { 119 PCBDDCReuseSolvers ctx; 120 PetscBool copy = PETSC_FALSE; 121 PetscErrorCode ierr; 122 123 PetscFunctionBegin; 124 ierr = PCShellGetContext(pc,(void **)&ctx);CHKERRQ(ierr); 125 if (full) { 126 #if defined(PETSC_HAVE_MUMPS) 127 ierr = MatMumpsSetIcntl(ctx->F,26,-1);CHKERRQ(ierr); 128 #endif 129 #if defined(PETSC_HAVE_MKL_PARDISO) 130 ierr = MatMkl_PardisoSetCntl(ctx->F,70,0);CHKERRQ(ierr); 131 #endif 132 copy = ctx->has_vertices; 133 } else { /* interior solver */ 134 #if defined(PETSC_HAVE_MUMPS) 135 ierr = MatMumpsSetIcntl(ctx->F,26,0);CHKERRQ(ierr); 136 #endif 137 #if defined(PETSC_HAVE_MKL_PARDISO) 138 ierr = MatMkl_PardisoSetCntl(ctx->F,70,1);CHKERRQ(ierr); 139 #endif 140 copy = PETSC_TRUE; 141 } 142 /* copy rhs into factored matrix workspace */ 143 if (copy) { 144 PetscInt n; 145 PetscScalar *array,*array_solver; 146 147 ierr = VecGetLocalSize(rhs,&n);CHKERRQ(ierr); 148 ierr = VecGetArrayRead(rhs,(const PetscScalar**)&array);CHKERRQ(ierr); 149 ierr = VecGetArray(ctx->rhs,&array_solver);CHKERRQ(ierr); 150 ierr = PetscMemcpy(array_solver,array,n*sizeof(PetscScalar));CHKERRQ(ierr); 151 ierr = VecRestoreArray(ctx->rhs,&array_solver);CHKERRQ(ierr); 152 ierr = VecRestoreArrayRead(rhs,(const PetscScalar**)&array);CHKERRQ(ierr); 153 154 ierr = PCBDDCReuseSolversBenignAdapt(ctx,ctx->rhs,NULL,PETSC_FALSE,full);CHKERRQ(ierr); 155 if (transpose) { 156 ierr = MatSolveTranspose(ctx->F,ctx->rhs,ctx->sol);CHKERRQ(ierr); 157 } else { 158 ierr = MatSolve(ctx->F,ctx->rhs,ctx->sol);CHKERRQ(ierr); 159 } 160 ierr = PCBDDCReuseSolversBenignAdapt(ctx,ctx->sol,NULL,PETSC_TRUE,full);CHKERRQ(ierr); 161 162 /* get back data to caller worskpace */ 163 ierr = VecGetArrayRead(ctx->sol,(const PetscScalar**)&array_solver);CHKERRQ(ierr); 164 ierr = VecGetArray(sol,&array);CHKERRQ(ierr); 165 ierr = PetscMemcpy(array,array_solver,n*sizeof(PetscScalar));CHKERRQ(ierr); 166 ierr = VecRestoreArray(sol,&array);CHKERRQ(ierr); 167 ierr = VecRestoreArrayRead(ctx->sol,(const PetscScalar**)&array_solver);CHKERRQ(ierr); 168 } else { 169 if (ctx->benign_n) { 170 ierr = PCBDDCReuseSolversBenignAdapt(ctx,rhs,ctx->rhs,PETSC_FALSE,full);CHKERRQ(ierr); 171 if (transpose) { 172 ierr = MatSolveTranspose(ctx->F,ctx->rhs,sol);CHKERRQ(ierr); 173 } else { 174 ierr = MatSolve(ctx->F,ctx->rhs,sol);CHKERRQ(ierr); 175 } 176 ierr = PCBDDCReuseSolversBenignAdapt(ctx,sol,NULL,PETSC_TRUE,full);CHKERRQ(ierr); 177 } else { 178 if (transpose) { 179 ierr = MatSolveTranspose(ctx->F,rhs,sol);CHKERRQ(ierr); 180 } else { 181 ierr = MatSolve(ctx->F,rhs,sol);CHKERRQ(ierr); 182 } 183 } 184 } 185 /* restore defaults */ 186 #if defined(PETSC_HAVE_MUMPS) 187 ierr = MatMumpsSetIcntl(ctx->F,26,-1);CHKERRQ(ierr); 188 #endif 189 #if defined(PETSC_HAVE_MKL_PARDISO) 190 ierr = MatMkl_PardisoSetCntl(ctx->F,70,0);CHKERRQ(ierr); 191 #endif 192 PetscFunctionReturn(0); 193 } 194 195 static PetscErrorCode PCBDDCReuseSolvers_Correction(PC pc, Vec rhs, Vec sol) 196 { 197 PetscErrorCode ierr; 198 199 PetscFunctionBegin; 200 ierr = PCBDDCReuseSolvers_Solve_Private(pc,rhs,sol,PETSC_FALSE,PETSC_TRUE);CHKERRQ(ierr); 201 PetscFunctionReturn(0); 202 } 203 204 static PetscErrorCode PCBDDCReuseSolvers_CorrectionTranspose(PC pc, Vec rhs, Vec sol) 205 { 206 PetscErrorCode ierr; 207 208 PetscFunctionBegin; 209 ierr = PCBDDCReuseSolvers_Solve_Private(pc,rhs,sol,PETSC_TRUE,PETSC_TRUE);CHKERRQ(ierr); 210 PetscFunctionReturn(0); 211 } 212 213 static PetscErrorCode PCBDDCReuseSolvers_Interior(PC pc, Vec rhs, Vec sol) 214 { 215 PetscErrorCode ierr; 216 217 PetscFunctionBegin; 218 ierr = PCBDDCReuseSolvers_Solve_Private(pc,rhs,sol,PETSC_FALSE,PETSC_FALSE);CHKERRQ(ierr); 219 PetscFunctionReturn(0); 220 } 221 222 static PetscErrorCode PCBDDCReuseSolvers_InteriorTranspose(PC pc, Vec rhs, Vec sol) 223 { 224 PetscErrorCode ierr; 225 226 PetscFunctionBegin; 227 ierr = PCBDDCReuseSolvers_Solve_Private(pc,rhs,sol,PETSC_TRUE,PETSC_FALSE);CHKERRQ(ierr); 228 PetscFunctionReturn(0); 229 } 230 231 static PetscErrorCode PCBDDCReuseSolvers_View(PC pc, PetscViewer viewer) 232 { 233 PCBDDCReuseSolvers ctx; 234 PetscBool iascii; 235 PetscErrorCode ierr; 236 237 PetscFunctionBegin; 238 ierr = PCShellGetContext(pc,(void **)&ctx);CHKERRQ(ierr); 239 ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr); 240 if (iascii) { 241 ierr = PetscViewerPushFormat(viewer,PETSC_VIEWER_ASCII_INFO);CHKERRQ(ierr); 242 } 243 ierr = MatView(ctx->F,viewer);CHKERRQ(ierr); 244 if (iascii) { 245 ierr = PetscViewerPopFormat(viewer);CHKERRQ(ierr); 246 } 247 PetscFunctionReturn(0); 248 } 249 250 static PetscErrorCode PCBDDCReuseSolversReset(PCBDDCReuseSolvers reuse) 251 { 252 PetscInt i; 253 PetscErrorCode ierr; 254 255 PetscFunctionBegin; 256 ierr = MatDestroy(&reuse->F);CHKERRQ(ierr); 257 ierr = VecDestroy(&reuse->sol);CHKERRQ(ierr); 258 ierr = VecDestroy(&reuse->rhs);CHKERRQ(ierr); 259 ierr = PCDestroy(&reuse->interior_solver);CHKERRQ(ierr); 260 ierr = PCDestroy(&reuse->correction_solver);CHKERRQ(ierr); 261 ierr = ISDestroy(&reuse->is_R);CHKERRQ(ierr); 262 ierr = ISDestroy(&reuse->is_B);CHKERRQ(ierr); 263 ierr = VecScatterDestroy(&reuse->correction_scatter_B);CHKERRQ(ierr); 264 ierr = VecDestroy(&reuse->sol_B);CHKERRQ(ierr); 265 ierr = VecDestroy(&reuse->rhs_B);CHKERRQ(ierr); 266 for (i=0;i<reuse->benign_n;i++) { 267 ierr = ISDestroy(&reuse->benign_zerodiag_subs[i]);CHKERRQ(ierr); 268 } 269 ierr = PetscFree(reuse->benign_zerodiag_subs);CHKERRQ(ierr); 270 ierr = PetscFree(reuse->benign_save_vals);CHKERRQ(ierr); 271 ierr = MatDestroy(&reuse->benign_csAIB);CHKERRQ(ierr); 272 ierr = MatDestroy(&reuse->benign_AIIm1ones);CHKERRQ(ierr); 273 ierr = VecDestroy(&reuse->benign_corr_work);CHKERRQ(ierr); 274 ierr = VecDestroy(&reuse->benign_dummy_schur_vec);CHKERRQ(ierr); 275 PetscFunctionReturn(0); 276 } 277 278 static PetscErrorCode PCBDDCComputeExplicitSchur(Mat M, PetscBool issym, MatReuse reuse, Mat *S) 279 { 280 Mat B, C, D, Bd, Cd, AinvBd; 281 KSP ksp; 282 PC pc; 283 PetscBool isLU, isILU, isCHOL, Bdense, Cdense; 284 PetscReal fill = 2.0; 285 PetscInt n_I; 286 PetscMPIInt size; 287 PetscErrorCode ierr; 288 289 PetscFunctionBegin; 290 ierr = MPI_Comm_size(PetscObjectComm((PetscObject)M),&size);CHKERRQ(ierr); 291 if (size != 1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Not for parallel matrices"); 292 if (reuse == MAT_REUSE_MATRIX) { 293 PetscBool Sdense; 294 295 ierr = PetscObjectTypeCompare((PetscObject)*S, MATSEQDENSE, &Sdense);CHKERRQ(ierr); 296 if (!Sdense) SETERRQ(PetscObjectComm((PetscObject)M),PETSC_ERR_SUP,"S should dense"); 297 } 298 ierr = MatSchurComplementGetSubMatrices(M, NULL, NULL, &B, &C, &D);CHKERRQ(ierr); 299 ierr = MatSchurComplementGetKSP(M, &ksp);CHKERRQ(ierr); 300 ierr = KSPGetPC(ksp, &pc);CHKERRQ(ierr); 301 ierr = PetscObjectTypeCompare((PetscObject) pc, PCLU, &isLU);CHKERRQ(ierr); 302 ierr = PetscObjectTypeCompare((PetscObject) pc, PCILU, &isILU);CHKERRQ(ierr); 303 ierr = PetscObjectTypeCompare((PetscObject) pc, PCCHOLESKY, &isCHOL);CHKERRQ(ierr); 304 ierr = PetscObjectTypeCompare((PetscObject) B, MATSEQDENSE, &Bdense);CHKERRQ(ierr); 305 ierr = PetscObjectTypeCompare((PetscObject) C, MATSEQDENSE, &Cdense);CHKERRQ(ierr); 306 ierr = MatGetSize(B,&n_I,NULL);CHKERRQ(ierr); 307 if (n_I) { 308 if (!Bdense) { 309 ierr = MatConvert(B, MATSEQDENSE, MAT_INITIAL_MATRIX, &Bd);CHKERRQ(ierr); 310 } else { 311 Bd = B; 312 } 313 314 if (isLU || isILU || isCHOL) { 315 Mat fact; 316 ierr = KSPSetUp(ksp);CHKERRQ(ierr); 317 ierr = PCFactorGetMatrix(pc, &fact);CHKERRQ(ierr); 318 ierr = MatDuplicate(Bd, MAT_DO_NOT_COPY_VALUES, &AinvBd);CHKERRQ(ierr); 319 ierr = MatMatSolve(fact, Bd, AinvBd);CHKERRQ(ierr); 320 } else { 321 PetscBool ex = PETSC_TRUE; 322 323 if (ex) { 324 Mat Ainvd; 325 326 ierr = PCComputeExplicitOperator(pc, &Ainvd);CHKERRQ(ierr); 327 ierr = MatMatMult(Ainvd, Bd, MAT_INITIAL_MATRIX, fill, &AinvBd);CHKERRQ(ierr); 328 ierr = MatDestroy(&Ainvd);CHKERRQ(ierr); 329 } else { 330 Vec sol,rhs; 331 PetscScalar *arrayrhs,*arraysol; 332 PetscInt i,nrhs,n; 333 334 ierr = MatDuplicate(Bd, MAT_DO_NOT_COPY_VALUES, &AinvBd);CHKERRQ(ierr); 335 ierr = MatGetSize(Bd,&n,&nrhs);CHKERRQ(ierr); 336 ierr = MatDenseGetArray(Bd,&arrayrhs);CHKERRQ(ierr); 337 ierr = MatDenseGetArray(AinvBd,&arraysol);CHKERRQ(ierr); 338 ierr = KSPGetSolution(ksp,&sol);CHKERRQ(ierr); 339 ierr = KSPGetRhs(ksp,&rhs);CHKERRQ(ierr); 340 for (i=0;i<nrhs;i++) { 341 ierr = VecPlaceArray(rhs,arrayrhs+i*n);CHKERRQ(ierr); 342 ierr = VecPlaceArray(sol,arraysol+i*n);CHKERRQ(ierr); 343 ierr = KSPSolve(ksp,rhs,sol);CHKERRQ(ierr); 344 ierr = VecResetArray(rhs);CHKERRQ(ierr); 345 ierr = VecResetArray(sol);CHKERRQ(ierr); 346 } 347 ierr = MatDenseRestoreArray(Bd,&arrayrhs);CHKERRQ(ierr); 348 ierr = MatDenseRestoreArray(AinvBd,&arrayrhs);CHKERRQ(ierr); 349 } 350 } 351 if (!Bdense & !issym) { 352 ierr = MatDestroy(&Bd);CHKERRQ(ierr); 353 } 354 355 if (!issym) { 356 if (!Cdense) { 357 ierr = MatConvert(C, MATSEQDENSE, MAT_INITIAL_MATRIX, &Cd);CHKERRQ(ierr); 358 } else { 359 Cd = C; 360 } 361 ierr = MatMatMult(Cd, AinvBd, reuse, fill, S);CHKERRQ(ierr); 362 if (!Cdense) { 363 ierr = MatDestroy(&Cd);CHKERRQ(ierr); 364 } 365 } else { 366 ierr = MatTransposeMatMult(Bd, AinvBd, reuse, fill, S);CHKERRQ(ierr); 367 if (!Bdense) { 368 ierr = MatDestroy(&Bd);CHKERRQ(ierr); 369 } 370 } 371 ierr = MatDestroy(&AinvBd);CHKERRQ(ierr); 372 } 373 374 if (D) { 375 Mat Dd; 376 PetscBool Ddense; 377 378 ierr = PetscObjectTypeCompare((PetscObject)D,MATSEQDENSE,&Ddense);CHKERRQ(ierr); 379 if (!Ddense) { 380 ierr = MatConvert(D, MATSEQDENSE, MAT_INITIAL_MATRIX, &Dd);CHKERRQ(ierr); 381 } else { 382 Dd = D; 383 } 384 if (n_I) { 385 ierr = MatAYPX(*S,-1.0,Dd,SAME_NONZERO_PATTERN);CHKERRQ(ierr); 386 } else { 387 if (reuse == MAT_INITIAL_MATRIX) { 388 ierr = MatDuplicate(Dd,MAT_COPY_VALUES,S);CHKERRQ(ierr); 389 } else { 390 ierr = MatCopy(Dd,*S,SAME_NONZERO_PATTERN);CHKERRQ(ierr); 391 } 392 } 393 if (!Ddense) { 394 ierr = MatDestroy(&Dd);CHKERRQ(ierr); 395 } 396 } else { 397 ierr = MatScale(*S,-1.0);CHKERRQ(ierr); 398 } 399 PetscFunctionReturn(0); 400 } 401 402 PetscErrorCode PCBDDCSubSchursSetUp(PCBDDCSubSchurs sub_schurs, Mat Ain, Mat Sin, PetscBool exact_schur, PetscInt xadj[], PetscInt adjncy[], PetscInt nlayers, Vec scaling, PetscBool compute_Stilda, PetscBool reuse_solvers, PetscBool benign_trick, PetscInt benign_n, PetscInt benign_p0_lidx[], IS benign_zerodiag_subs[], Mat change, IS change_primal) 403 { 404 Mat F,A_II,A_IB,A_BI,A_BB,AE_II; 405 Mat S_all; 406 Mat global_schur_subsets,work_mat,*submats; 407 ISLocalToGlobalMapping l2gmap_subsets; 408 IS is_I,is_I_layer; 409 IS all_subsets,all_subsets_mult,all_subsets_n; 410 PetscInt *nnz,*all_local_idx_N; 411 PetscInt *auxnum1,*auxnum2; 412 PetscInt i,subset_size,max_subset_size; 413 PetscInt n_B,extra,local_size,global_size; 414 PetscBLASInt B_N,B_ierr,B_lwork,*pivots; 415 PetscScalar *Bwork; 416 MPI_Comm comm_n; 417 PetscBool deluxe = PETSC_TRUE; 418 PetscBool use_potr = PETSC_FALSE, use_sytr = PETSC_FALSE; 419 PetscViewer matl_dbg_viewer = NULL; 420 PetscErrorCode ierr; 421 422 PetscFunctionBegin; 423 ierr = MatDestroy(&sub_schurs->A);CHKERRQ(ierr); 424 ierr = MatDestroy(&sub_schurs->S);CHKERRQ(ierr); 425 /* convert matrix if needed */ 426 if (Ain) { 427 PetscBool isseqaij; 428 ierr = PetscObjectTypeCompare((PetscObject)Ain,MATSEQAIJ,&isseqaij);CHKERRQ(ierr); 429 if (isseqaij) { 430 ierr = PetscObjectReference((PetscObject)Ain);CHKERRQ(ierr); 431 sub_schurs->A = Ain; 432 } else { 433 ierr = MatConvert(Ain,MATSEQAIJ,MAT_INITIAL_MATRIX,&sub_schurs->A);CHKERRQ(ierr); 434 } 435 } 436 437 ierr = PetscObjectReference((PetscObject)Sin);CHKERRQ(ierr); 438 sub_schurs->S = Sin; 439 if (sub_schurs->schur_explicit) { 440 sub_schurs->schur_explicit = (PetscBool)(!!sub_schurs->A); 441 } 442 443 /* preliminary checks */ 444 if (!sub_schurs->schur_explicit && compute_Stilda) SETERRQ(PetscObjectComm((PetscObject)sub_schurs->l2gmap),PETSC_ERR_SUP,"Adaptive selection of constraints requires MUMPS and/or MKL_PARDISO"); 445 446 if (benign_trick) sub_schurs->is_posdef = PETSC_FALSE; 447 448 /* debug (MATLAB) */ 449 if (sub_schurs->debug) { 450 PetscMPIInt size,rank; 451 PetscInt nr,*print_schurs_ranks,print_schurs; 452 PetscBool flg; 453 454 ierr = MPI_Comm_size(PetscObjectComm((PetscObject)sub_schurs->l2gmap),&size);CHKERRQ(ierr); 455 ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)sub_schurs->l2gmap),&rank);CHKERRQ(ierr); 456 nr = size; 457 ierr = PetscMalloc1(nr,&print_schurs_ranks);CHKERRQ(ierr); 458 ierr = PetscOptionsBegin(PetscObjectComm((PetscObject)sub_schurs->l2gmap),sub_schurs->prefix,"BDDC sub_schurs options","PC");CHKERRQ(ierr); 459 ierr = PetscOptionsIntArray("-sub_schurs_debug_ranks","Ranks to debug (all if the option is not used)",NULL,print_schurs_ranks,&nr,&flg);CHKERRQ(ierr); 460 if (!flg) print_schurs = PETSC_TRUE; 461 else { 462 for (i=0;i<nr;i++) if (print_schurs_ranks[i] == (PetscInt)rank) { print_schurs = PETSC_TRUE; break; } 463 } 464 ierr = PetscOptionsEnd();CHKERRQ(ierr); 465 ierr = PetscFree(print_schurs_ranks);CHKERRQ(ierr); 466 if (print_schurs) { 467 char filename[256]; 468 469 ierr = PetscSNPrintf(filename,sizeof(filename),"sub_schurs_Schur_r%d.m",PetscGlobalRank);CHKERRQ(ierr); 470 ierr = PetscViewerASCIIOpen(PETSC_COMM_SELF,filename,&matl_dbg_viewer);CHKERRQ(ierr); 471 ierr = PetscViewerPushFormat(matl_dbg_viewer,PETSC_VIEWER_ASCII_MATLAB);CHKERRQ(ierr); 472 } 473 } 474 475 476 /* restrict work on active processes */ 477 if (sub_schurs->restrict_comm) { 478 PetscSubcomm subcomm; 479 PetscMPIInt color,rank; 480 481 color = 0; 482 if (!sub_schurs->n_subs) color = 1; /* this can happen if we are in a multilevel case or if the subdomain is disconnected */ 483 ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)sub_schurs->l2gmap),&rank);CHKERRQ(ierr); 484 ierr = PetscSubcommCreate(PetscObjectComm((PetscObject)sub_schurs->l2gmap),&subcomm);CHKERRQ(ierr); 485 ierr = PetscSubcommSetNumber(subcomm,2);CHKERRQ(ierr); 486 ierr = PetscSubcommSetTypeGeneral(subcomm,color,rank);CHKERRQ(ierr); 487 ierr = PetscCommDuplicate(PetscSubcommChild(subcomm),&comm_n,NULL);CHKERRQ(ierr); 488 ierr = PetscSubcommDestroy(&subcomm);CHKERRQ(ierr); 489 if (!sub_schurs->n_subs) { 490 ierr = PetscCommDestroy(&comm_n);CHKERRQ(ierr); 491 PetscFunctionReturn(0); 492 } 493 } else { 494 ierr = PetscCommDuplicate(PetscObjectComm((PetscObject)sub_schurs->l2gmap),&comm_n,NULL);CHKERRQ(ierr); 495 } 496 497 /* get Schur complement matrices */ 498 if (!sub_schurs->schur_explicit) { 499 Mat tA_IB,tA_BI,tA_BB; 500 PetscBool isseqsbaij; 501 ierr = MatSchurComplementGetSubMatrices(sub_schurs->S,&A_II,NULL,&tA_IB,&tA_BI,&tA_BB);CHKERRQ(ierr); 502 ierr = PetscObjectTypeCompare((PetscObject)tA_BB,MATSEQSBAIJ,&isseqsbaij);CHKERRQ(ierr); 503 if (isseqsbaij) { 504 ierr = MatConvert(tA_BB,MATSEQAIJ,MAT_INITIAL_MATRIX,&A_BB);CHKERRQ(ierr); 505 ierr = MatConvert(tA_IB,MATSEQAIJ,MAT_INITIAL_MATRIX,&A_IB);CHKERRQ(ierr); 506 ierr = MatConvert(tA_BI,MATSEQAIJ,MAT_INITIAL_MATRIX,&A_BI);CHKERRQ(ierr); 507 } else { 508 ierr = PetscObjectReference((PetscObject)tA_BB);CHKERRQ(ierr); 509 A_BB = tA_BB; 510 ierr = PetscObjectReference((PetscObject)tA_IB);CHKERRQ(ierr); 511 A_IB = tA_IB; 512 ierr = PetscObjectReference((PetscObject)tA_BI);CHKERRQ(ierr); 513 A_BI = tA_BI; 514 } 515 } else { 516 A_II = NULL; 517 A_IB = NULL; 518 A_BI = NULL; 519 A_BB = NULL; 520 } 521 S_all = NULL; 522 523 /* determine interior problems */ 524 ierr = ISGetLocalSize(sub_schurs->is_I,&i);CHKERRQ(ierr); 525 if (nlayers >= 0 && i) { /* Interior problems can be different from the original one */ 526 PetscBT touched; 527 const PetscInt* idx_B; 528 PetscInt n_I,n_B,n_local_dofs,n_prev_added,j,layer,*local_numbering; 529 530 if (!xadj) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Cannot request layering without adjacency"); 531 /* get sizes */ 532 ierr = ISGetLocalSize(sub_schurs->is_I,&n_I);CHKERRQ(ierr); 533 ierr = ISGetLocalSize(sub_schurs->is_B,&n_B);CHKERRQ(ierr); 534 535 ierr = PetscMalloc1(n_I+n_B,&local_numbering);CHKERRQ(ierr); 536 ierr = PetscBTCreate(n_I+n_B,&touched);CHKERRQ(ierr); 537 ierr = PetscBTMemzero(n_I+n_B,touched);CHKERRQ(ierr); 538 539 /* all boundary dofs must be skipped when adding layers */ 540 ierr = ISGetIndices(sub_schurs->is_B,&idx_B);CHKERRQ(ierr); 541 for (j=0;j<n_B;j++) { 542 ierr = PetscBTSet(touched,idx_B[j]);CHKERRQ(ierr); 543 } 544 ierr = PetscMemcpy(local_numbering,idx_B,n_B*sizeof(PetscInt));CHKERRQ(ierr); 545 ierr = ISRestoreIndices(sub_schurs->is_B,&idx_B);CHKERRQ(ierr); 546 547 /* add prescribed number of layers of dofs */ 548 n_local_dofs = n_B; 549 n_prev_added = n_B; 550 for (layer=0;layer<nlayers;layer++) { 551 PetscInt n_added; 552 if (n_local_dofs == n_I+n_B) break; 553 if (n_local_dofs > n_I+n_B) SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Error querying layer %D. Out of bound access (%D > %D)",layer,n_local_dofs,n_I+n_B); 554 ierr = PCBDDCAdjGetNextLayer_Private(local_numbering+n_local_dofs,n_prev_added,touched,xadj,adjncy,&n_added);CHKERRQ(ierr); 555 n_prev_added = n_added; 556 n_local_dofs += n_added; 557 if (!n_added) break; 558 } 559 ierr = PetscBTDestroy(&touched);CHKERRQ(ierr); 560 561 /* IS for I layer dofs in original numbering */ 562 ierr = ISCreateGeneral(PetscObjectComm((PetscObject)sub_schurs->is_I),n_local_dofs-n_B,local_numbering+n_B,PETSC_COPY_VALUES,&is_I_layer);CHKERRQ(ierr); 563 ierr = PetscFree(local_numbering);CHKERRQ(ierr); 564 ierr = ISSort(is_I_layer);CHKERRQ(ierr); 565 /* IS for I layer dofs in I numbering */ 566 if (!sub_schurs->schur_explicit) { 567 ISLocalToGlobalMapping ItoNmap; 568 ierr = ISLocalToGlobalMappingCreateIS(sub_schurs->is_I,&ItoNmap);CHKERRQ(ierr); 569 ierr = ISGlobalToLocalMappingApplyIS(ItoNmap,IS_GTOLM_DROP,is_I_layer,&is_I);CHKERRQ(ierr); 570 ierr = ISLocalToGlobalMappingDestroy(&ItoNmap);CHKERRQ(ierr); 571 572 /* II block */ 573 ierr = MatCreateSubMatrix(A_II,is_I,is_I,MAT_INITIAL_MATRIX,&AE_II);CHKERRQ(ierr); 574 } 575 } else { 576 PetscInt n_I; 577 578 /* IS for I dofs in original numbering */ 579 ierr = PetscObjectReference((PetscObject)sub_schurs->is_I);CHKERRQ(ierr); 580 is_I_layer = sub_schurs->is_I; 581 582 /* IS for I dofs in I numbering (strided 1) */ 583 if (!sub_schurs->schur_explicit) { 584 ierr = ISGetSize(sub_schurs->is_I,&n_I);CHKERRQ(ierr); 585 ierr = ISCreateStride(PetscObjectComm((PetscObject)sub_schurs->is_I),n_I,0,1,&is_I);CHKERRQ(ierr); 586 587 /* II block is the same */ 588 ierr = PetscObjectReference((PetscObject)A_II);CHKERRQ(ierr); 589 AE_II = A_II; 590 } 591 } 592 593 /* Get info on subset sizes and sum of all subsets sizes */ 594 max_subset_size = 0; 595 local_size = 0; 596 for (i=0;i<sub_schurs->n_subs;i++) { 597 ierr = ISGetLocalSize(sub_schurs->is_subs[i],&subset_size);CHKERRQ(ierr); 598 max_subset_size = PetscMax(subset_size,max_subset_size); 599 local_size += subset_size; 600 } 601 602 /* Work arrays for local indices */ 603 extra = 0; 604 ierr = ISGetLocalSize(sub_schurs->is_B,&n_B);CHKERRQ(ierr); 605 if (sub_schurs->schur_explicit && is_I_layer) { 606 ierr = ISGetLocalSize(is_I_layer,&extra);CHKERRQ(ierr); 607 } 608 ierr = PetscMalloc1(n_B+extra,&all_local_idx_N);CHKERRQ(ierr); 609 if (extra) { 610 const PetscInt *idxs; 611 ierr = ISGetIndices(is_I_layer,&idxs);CHKERRQ(ierr); 612 ierr = PetscMemcpy(all_local_idx_N,idxs,extra*sizeof(PetscInt));CHKERRQ(ierr); 613 ierr = ISRestoreIndices(is_I_layer,&idxs);CHKERRQ(ierr); 614 } 615 ierr = PetscMalloc1(local_size,&nnz);CHKERRQ(ierr); 616 ierr = PetscMalloc1(sub_schurs->n_subs,&auxnum1);CHKERRQ(ierr); 617 ierr = PetscMalloc1(sub_schurs->n_subs,&auxnum2);CHKERRQ(ierr); 618 619 /* Get local indices in local numbering */ 620 local_size = 0; 621 for (i=0;i<sub_schurs->n_subs;i++) { 622 PetscInt j; 623 const PetscInt *idxs; 624 625 ierr = ISGetLocalSize(sub_schurs->is_subs[i],&subset_size);CHKERRQ(ierr); 626 ierr = ISGetIndices(sub_schurs->is_subs[i],&idxs);CHKERRQ(ierr); 627 /* start (smallest in global ordering) and multiplicity */ 628 auxnum1[i] = idxs[0]; 629 auxnum2[i] = subset_size; 630 /* subset indices in local numbering */ 631 ierr = PetscMemcpy(all_local_idx_N+local_size+extra,idxs,subset_size*sizeof(PetscInt));CHKERRQ(ierr); 632 ierr = ISRestoreIndices(sub_schurs->is_subs[i],&idxs);CHKERRQ(ierr); 633 for (j=0;j<subset_size;j++) nnz[local_size+j] = subset_size; 634 local_size += subset_size; 635 } 636 637 /* allocate extra workspace needed only for GETRI or SYTRF */ 638 use_potr = use_sytr = PETSC_FALSE; 639 if (benign_trick || (sub_schurs->is_hermitian && sub_schurs->is_posdef)) { 640 use_potr = PETSC_TRUE; 641 } else if (sub_schurs->is_symmetric) { 642 use_sytr = PETSC_TRUE; 643 } 644 if (local_size && !use_potr) { 645 PetscScalar lwork,dummyscalar = 0.; 646 PetscBLASInt dummyint = 0; 647 648 B_lwork = -1; 649 ierr = PetscBLASIntCast(local_size,&B_N);CHKERRQ(ierr); 650 ierr = PetscFPTrapPush(PETSC_FP_TRAP_OFF);CHKERRQ(ierr); 651 if (use_sytr) { 652 PetscStackCallBLAS("LAPACKsytrf",LAPACKsytrf_("L",&B_N,&dummyscalar,&B_N,&dummyint,&lwork,&B_lwork,&B_ierr)); 653 if (B_ierr) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_LIB,"Error in query to SYTRF Lapack routine %d",(int)B_ierr); 654 } else { 655 PetscStackCallBLAS("LAPACKgetri",LAPACKgetri_(&B_N,&dummyscalar,&B_N,&dummyint,&lwork,&B_lwork,&B_ierr)); 656 if (B_ierr) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_LIB,"Error in query to GETRI Lapack routine %d",(int)B_ierr); 657 } 658 ierr = PetscFPTrapPop();CHKERRQ(ierr); 659 ierr = PetscBLASIntCast((PetscInt)PetscRealPart(lwork),&B_lwork);CHKERRQ(ierr); 660 ierr = PetscMalloc2(B_lwork,&Bwork,B_N,&pivots);CHKERRQ(ierr); 661 } else { 662 Bwork = NULL; 663 pivots = NULL; 664 } 665 666 /* prepare parallel matrices for summing up properly schurs on subsets */ 667 ierr = ISCreateGeneral(comm_n,sub_schurs->n_subs,auxnum1,PETSC_OWN_POINTER,&all_subsets_n);CHKERRQ(ierr); 668 ierr = ISLocalToGlobalMappingApplyIS(sub_schurs->l2gmap,all_subsets_n,&all_subsets);CHKERRQ(ierr); 669 ierr = ISDestroy(&all_subsets_n);CHKERRQ(ierr); 670 ierr = ISCreateGeneral(comm_n,sub_schurs->n_subs,auxnum2,PETSC_OWN_POINTER,&all_subsets_mult);CHKERRQ(ierr); 671 ierr = ISRenumber(all_subsets,all_subsets_mult,&global_size,&all_subsets_n);CHKERRQ(ierr); 672 ierr = ISDestroy(&all_subsets);CHKERRQ(ierr); 673 ierr = ISDestroy(&all_subsets_mult);CHKERRQ(ierr); 674 ierr = ISGetLocalSize(all_subsets_n,&i);CHKERRQ(ierr); 675 if (i != local_size) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Invalid size of new subset! %D != %D",i,local_size); 676 ierr = ISLocalToGlobalMappingCreateIS(all_subsets_n,&l2gmap_subsets);CHKERRQ(ierr); 677 ierr = MatCreateIS(comm_n,1,PETSC_DECIDE,PETSC_DECIDE,global_size,global_size,l2gmap_subsets,NULL,&work_mat);CHKERRQ(ierr); 678 ierr = ISLocalToGlobalMappingDestroy(&l2gmap_subsets);CHKERRQ(ierr); 679 ierr = MatCreate(PetscObjectComm((PetscObject)work_mat),&global_schur_subsets);CHKERRQ(ierr); 680 ierr = MatSetSizes(global_schur_subsets,PETSC_DECIDE,PETSC_DECIDE,global_size,global_size);CHKERRQ(ierr); 681 ierr = MatSetType(global_schur_subsets,MATMPIAIJ);CHKERRQ(ierr); 682 683 /* subset indices in local boundary numbering */ 684 if (!sub_schurs->is_Ej_all) { 685 PetscInt *all_local_idx_B; 686 687 ierr = PetscMalloc1(local_size,&all_local_idx_B);CHKERRQ(ierr); 688 ierr = ISGlobalToLocalMappingApply(sub_schurs->BtoNmap,IS_GTOLM_DROP,local_size,all_local_idx_N+extra,&subset_size,all_local_idx_B);CHKERRQ(ierr); 689 if (subset_size != local_size) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Error in sub_schurs serial (BtoNmap)! %D != %D",subset_size,local_size); 690 ierr = ISCreateGeneral(PETSC_COMM_SELF,local_size,all_local_idx_B,PETSC_OWN_POINTER,&sub_schurs->is_Ej_all);CHKERRQ(ierr); 691 } 692 693 if (change) { 694 ISLocalToGlobalMapping BtoS; 695 IS change_primal_B; 696 IS change_primal_all; 697 698 if (sub_schurs->change_primal_sub) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"This should not happen"); 699 if (sub_schurs->change) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"This should not happen"); 700 ierr = PetscMalloc1(sub_schurs->n_subs,&sub_schurs->change_primal_sub);CHKERRQ(ierr); 701 for (i=0;i<sub_schurs->n_subs;i++) { 702 ISLocalToGlobalMapping NtoS; 703 ierr = ISLocalToGlobalMappingCreateIS(sub_schurs->is_subs[i],&NtoS);CHKERRQ(ierr); 704 ierr = ISGlobalToLocalMappingApplyIS(NtoS,IS_GTOLM_DROP,change_primal,&sub_schurs->change_primal_sub[i]);CHKERRQ(ierr); 705 ierr = ISLocalToGlobalMappingDestroy(&NtoS);CHKERRQ(ierr); 706 } 707 ierr = ISGlobalToLocalMappingApplyIS(sub_schurs->BtoNmap,IS_GTOLM_DROP,change_primal,&change_primal_B);CHKERRQ(ierr); 708 ierr = ISLocalToGlobalMappingCreateIS(sub_schurs->is_Ej_all,&BtoS);CHKERRQ(ierr); 709 ierr = ISGlobalToLocalMappingApplyIS(BtoS,IS_GTOLM_DROP,change_primal_B,&change_primal_all);CHKERRQ(ierr); 710 ierr = ISLocalToGlobalMappingDestroy(&BtoS);CHKERRQ(ierr); 711 ierr = ISDestroy(&change_primal_B);CHKERRQ(ierr); 712 ierr = PetscMalloc1(sub_schurs->n_subs,&sub_schurs->change);CHKERRQ(ierr); 713 for (i=0;i<sub_schurs->n_subs;i++) { 714 Mat change_sub; 715 716 ierr = ISGetLocalSize(sub_schurs->is_subs[i],&subset_size);CHKERRQ(ierr); 717 ierr = KSPCreate(PETSC_COMM_SELF,&sub_schurs->change[i]);CHKERRQ(ierr); 718 ierr = KSPSetType(sub_schurs->change[i],KSPPREONLY);CHKERRQ(ierr); 719 if (!sub_schurs->change_with_qr) { 720 ierr = MatCreateSubMatrix(change,sub_schurs->is_subs[i],sub_schurs->is_subs[i],MAT_INITIAL_MATRIX,&change_sub);CHKERRQ(ierr); 721 } else { 722 Mat change_subt; 723 ierr = MatCreateSubMatrix(change,sub_schurs->is_subs[i],sub_schurs->is_subs[i],MAT_INITIAL_MATRIX,&change_subt);CHKERRQ(ierr); 724 ierr = MatConvert(change_subt,MATSEQDENSE,MAT_INITIAL_MATRIX,&change_sub);CHKERRQ(ierr); 725 ierr = MatDestroy(&change_subt);CHKERRQ(ierr); 726 } 727 ierr = KSPSetOperators(sub_schurs->change[i],change_sub,change_sub);CHKERRQ(ierr); 728 ierr = MatDestroy(&change_sub);CHKERRQ(ierr); 729 ierr = KSPSetOptionsPrefix(sub_schurs->change[i],sub_schurs->prefix);CHKERRQ(ierr); 730 ierr = KSPAppendOptionsPrefix(sub_schurs->change[i],"sub_schurs_change_");CHKERRQ(ierr); 731 } 732 ierr = ISDestroy(&change_primal_all);CHKERRQ(ierr); 733 } 734 735 /* Local matrix of all local Schur on subsets (transposed) */ 736 if (!sub_schurs->S_Ej_all) { 737 ierr = MatCreate(PETSC_COMM_SELF,&sub_schurs->S_Ej_all);CHKERRQ(ierr); 738 ierr = MatSetSizes(sub_schurs->S_Ej_all,PETSC_DECIDE,PETSC_DECIDE,local_size,local_size);CHKERRQ(ierr); 739 ierr = MatSetType(sub_schurs->S_Ej_all,MATAIJ);CHKERRQ(ierr); 740 ierr = MatSeqAIJSetPreallocation(sub_schurs->S_Ej_all,0,nnz);CHKERRQ(ierr); 741 } 742 743 /* Compute Schur complements explicitly */ 744 F = NULL; 745 if (!sub_schurs->schur_explicit) { 746 /* this code branch is used when MatFactor with Schur complement support is not present or when explicitly requested; 747 it is not efficient, unless the economic version of the scaling is used */ 748 Mat S_Ej_expl; 749 PetscScalar *work; 750 PetscInt j,*dummy_idx; 751 PetscBool Sdense; 752 753 ierr = PetscMalloc2(max_subset_size,&dummy_idx,max_subset_size*max_subset_size,&work);CHKERRQ(ierr); 754 local_size = 0; 755 for (i=0;i<sub_schurs->n_subs;i++) { 756 IS is_subset_B; 757 Mat AE_EE,AE_IE,AE_EI,S_Ej; 758 759 /* subsets in original and boundary numbering */ 760 ierr = ISGlobalToLocalMappingApplyIS(sub_schurs->BtoNmap,IS_GTOLM_DROP,sub_schurs->is_subs[i],&is_subset_B);CHKERRQ(ierr); 761 /* EE block */ 762 ierr = MatCreateSubMatrix(A_BB,is_subset_B,is_subset_B,MAT_INITIAL_MATRIX,&AE_EE);CHKERRQ(ierr); 763 /* IE block */ 764 ierr = MatCreateSubMatrix(A_IB,is_I,is_subset_B,MAT_INITIAL_MATRIX,&AE_IE);CHKERRQ(ierr); 765 /* EI block */ 766 if (sub_schurs->is_symmetric) { 767 ierr = MatCreateTranspose(AE_IE,&AE_EI);CHKERRQ(ierr); 768 } else if (sub_schurs->is_hermitian) { 769 ierr = MatCreateHermitianTranspose(AE_IE,&AE_EI);CHKERRQ(ierr); 770 } else { 771 ierr = MatCreateSubMatrix(A_BI,is_subset_B,is_I,MAT_INITIAL_MATRIX,&AE_EI);CHKERRQ(ierr); 772 } 773 ierr = ISDestroy(&is_subset_B);CHKERRQ(ierr); 774 ierr = MatCreateSchurComplement(AE_II,AE_II,AE_IE,AE_EI,AE_EE,&S_Ej);CHKERRQ(ierr); 775 ierr = MatDestroy(&AE_EE);CHKERRQ(ierr); 776 ierr = MatDestroy(&AE_IE);CHKERRQ(ierr); 777 ierr = MatDestroy(&AE_EI);CHKERRQ(ierr); 778 if (AE_II == A_II) { /* we can reuse the same ksp */ 779 KSP ksp; 780 ierr = MatSchurComplementGetKSP(sub_schurs->S,&ksp);CHKERRQ(ierr); 781 ierr = MatSchurComplementSetKSP(S_Ej,ksp);CHKERRQ(ierr); 782 } else { /* build new ksp object which inherits ksp and pc types from the original one */ 783 KSP origksp,schurksp; 784 PC origpc,schurpc; 785 KSPType ksp_type; 786 PetscInt n_internal; 787 PetscBool ispcnone; 788 789 ierr = MatSchurComplementGetKSP(sub_schurs->S,&origksp);CHKERRQ(ierr); 790 ierr = MatSchurComplementGetKSP(S_Ej,&schurksp);CHKERRQ(ierr); 791 ierr = KSPGetType(origksp,&ksp_type);CHKERRQ(ierr); 792 ierr = KSPSetType(schurksp,ksp_type);CHKERRQ(ierr); 793 ierr = KSPGetPC(schurksp,&schurpc);CHKERRQ(ierr); 794 ierr = KSPGetPC(origksp,&origpc);CHKERRQ(ierr); 795 ierr = PetscObjectTypeCompare((PetscObject)origpc,PCNONE,&ispcnone);CHKERRQ(ierr); 796 if (!ispcnone) { 797 PCType pc_type; 798 ierr = PCGetType(origpc,&pc_type);CHKERRQ(ierr); 799 ierr = PCSetType(schurpc,pc_type);CHKERRQ(ierr); 800 } else { 801 ierr = PCSetType(schurpc,PCLU);CHKERRQ(ierr); 802 } 803 ierr = ISGetSize(is_I,&n_internal);CHKERRQ(ierr); 804 if (n_internal) { /* UMFPACK gives error with 0 sized problems */ 805 MatSolverType solver = NULL; 806 ierr = PCFactorGetMatSolverType(origpc,(MatSolverType*)&solver);CHKERRQ(ierr); 807 if (solver) { 808 ierr = PCFactorSetMatSolverType(schurpc,solver);CHKERRQ(ierr); 809 } 810 } 811 ierr = KSPSetUp(schurksp);CHKERRQ(ierr); 812 } 813 ierr = ISGetLocalSize(sub_schurs->is_subs[i],&subset_size);CHKERRQ(ierr); 814 ierr = MatCreateSeqDense(PETSC_COMM_SELF,subset_size,subset_size,work,&S_Ej_expl);CHKERRQ(ierr); 815 ierr = PCBDDCComputeExplicitSchur(S_Ej,sub_schurs->is_symmetric,MAT_REUSE_MATRIX,&S_Ej_expl);CHKERRQ(ierr); 816 ierr = PetscObjectTypeCompare((PetscObject)S_Ej_expl,MATSEQDENSE,&Sdense);CHKERRQ(ierr); 817 if (Sdense) { 818 for (j=0;j<subset_size;j++) { 819 dummy_idx[j]=local_size+j; 820 } 821 ierr = MatSetValues(sub_schurs->S_Ej_all,subset_size,dummy_idx,subset_size,dummy_idx,work,INSERT_VALUES);CHKERRQ(ierr); 822 } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Not yet implemented for sparse matrices"); 823 ierr = MatDestroy(&S_Ej);CHKERRQ(ierr); 824 ierr = MatDestroy(&S_Ej_expl);CHKERRQ(ierr); 825 local_size += subset_size; 826 } 827 ierr = PetscFree2(dummy_idx,work);CHKERRQ(ierr); 828 /* free */ 829 ierr = ISDestroy(&is_I);CHKERRQ(ierr); 830 ierr = MatDestroy(&AE_II);CHKERRQ(ierr); 831 ierr = PetscFree(all_local_idx_N);CHKERRQ(ierr); 832 } else { 833 Mat A,cs_AIB_mat = NULL,benign_AIIm1_ones_mat = NULL; 834 Vec Dall = NULL; 835 IS is_A_all,*is_p_r = NULL; 836 PetscScalar *work,*S_data,*schur_factor,infty = PETSC_MAX_REAL; 837 PetscInt n,n_I,*dummy_idx,size_schur,size_active_schur,cum,cum2; 838 PetscBool economic,solver_S,S_lower_triangular = PETSC_FALSE; 839 PetscBool schur_has_vertices,factor_workaround; 840 PetscBool use_cholesky; 841 842 /* get sizes */ 843 n_I = 0; 844 if (is_I_layer) { 845 ierr = ISGetLocalSize(is_I_layer,&n_I);CHKERRQ(ierr); 846 } 847 economic = PETSC_FALSE; 848 ierr = ISGetLocalSize(sub_schurs->is_I,&cum);CHKERRQ(ierr); 849 if (cum != n_I) economic = PETSC_TRUE; 850 ierr = MatGetLocalSize(sub_schurs->A,&n,NULL);CHKERRQ(ierr); 851 size_active_schur = local_size; 852 853 /* import scaling vector (wrong formulation if we have 3D edges) */ 854 if (scaling && compute_Stilda) { 855 const PetscScalar *array; 856 PetscScalar *array2; 857 const PetscInt *idxs; 858 PetscInt i; 859 860 ierr = ISGetIndices(sub_schurs->is_Ej_all,&idxs);CHKERRQ(ierr); 861 ierr = VecCreateSeq(PETSC_COMM_SELF,size_active_schur,&Dall);CHKERRQ(ierr); 862 ierr = VecGetArrayRead(scaling,&array);CHKERRQ(ierr); 863 ierr = VecGetArray(Dall,&array2);CHKERRQ(ierr); 864 for (i=0;i<size_active_schur;i++) array2[i] = array[idxs[i]]; 865 ierr = VecRestoreArray(Dall,&array2);CHKERRQ(ierr); 866 ierr = VecRestoreArrayRead(scaling,&array);CHKERRQ(ierr); 867 ierr = ISRestoreIndices(sub_schurs->is_Ej_all,&idxs);CHKERRQ(ierr); 868 deluxe = PETSC_FALSE; 869 } 870 871 /* size active schurs does not count any dirichlet or vertex dof on the interface */ 872 factor_workaround = PETSC_FALSE; 873 schur_has_vertices = PETSC_FALSE; 874 cum = n_I+size_active_schur; 875 if (sub_schurs->is_dir) { 876 const PetscInt* idxs; 877 PetscInt n_dir; 878 879 ierr = ISGetLocalSize(sub_schurs->is_dir,&n_dir);CHKERRQ(ierr); 880 ierr = ISGetIndices(sub_schurs->is_dir,&idxs);CHKERRQ(ierr); 881 ierr = PetscMemcpy(all_local_idx_N+cum,idxs,n_dir*sizeof(PetscInt));CHKERRQ(ierr); 882 ierr = ISRestoreIndices(sub_schurs->is_dir,&idxs);CHKERRQ(ierr); 883 cum += n_dir; 884 factor_workaround = PETSC_TRUE; 885 } 886 /* include the primal vertices in the Schur complement */ 887 if (exact_schur && sub_schurs->is_vertices && (compute_Stilda || benign_n)) { 888 PetscInt n_v; 889 890 ierr = ISGetLocalSize(sub_schurs->is_vertices,&n_v);CHKERRQ(ierr); 891 if (n_v) { 892 const PetscInt* idxs; 893 894 ierr = ISGetIndices(sub_schurs->is_vertices,&idxs);CHKERRQ(ierr); 895 ierr = PetscMemcpy(all_local_idx_N+cum,idxs,n_v*sizeof(PetscInt));CHKERRQ(ierr); 896 ierr = ISRestoreIndices(sub_schurs->is_vertices,&idxs);CHKERRQ(ierr); 897 cum += n_v; 898 factor_workaround = PETSC_TRUE; 899 schur_has_vertices = PETSC_TRUE; 900 } 901 } 902 size_schur = cum - n_I; 903 ierr = ISCreateGeneral(PETSC_COMM_SELF,cum,all_local_idx_N,PETSC_OWN_POINTER,&is_A_all);CHKERRQ(ierr); 904 if (cum == n) { 905 ierr = ISSetPermutation(is_A_all);CHKERRQ(ierr); 906 ierr = MatPermute(sub_schurs->A,is_A_all,is_A_all,&A);CHKERRQ(ierr); 907 } else { 908 ierr = MatCreateSubMatrix(sub_schurs->A,is_A_all,is_A_all,MAT_INITIAL_MATRIX,&A);CHKERRQ(ierr); 909 } 910 ierr = MatSetOptionsPrefix(A,sub_schurs->prefix);CHKERRQ(ierr); 911 ierr = MatAppendOptionsPrefix(A,"sub_schurs_");CHKERRQ(ierr); 912 913 /* if we actually change the basis for the pressures, LDL^T factors will use a lot of memory 914 n^2 instead of n^1.5 or something. This is a workaround */ 915 if (benign_n) { 916 Vec v; 917 ISLocalToGlobalMapping N_to_reor; 918 IS is_p0,is_p0_p; 919 PetscScalar *cs_AIB,*AIIm1_data; 920 PetscInt sizeA; 921 922 ierr = ISLocalToGlobalMappingCreateIS(is_A_all,&N_to_reor);CHKERRQ(ierr); 923 ierr = ISCreateGeneral(PETSC_COMM_SELF,benign_n,benign_p0_lidx,PETSC_COPY_VALUES,&is_p0);CHKERRQ(ierr); 924 ierr = ISGlobalToLocalMappingApplyIS(N_to_reor,IS_GTOLM_DROP,is_p0,&is_p0_p);CHKERRQ(ierr); 925 ierr = ISDestroy(&is_p0);CHKERRQ(ierr); 926 ierr = MatCreateVecs(A,&v,NULL);CHKERRQ(ierr); 927 ierr = VecGetSize(v,&sizeA);CHKERRQ(ierr); 928 ierr = MatCreateSeqDense(PETSC_COMM_SELF,sizeA,benign_n,NULL,&benign_AIIm1_ones_mat);CHKERRQ(ierr); 929 ierr = MatCreateSeqDense(PETSC_COMM_SELF,size_schur,benign_n,NULL,&cs_AIB_mat);CHKERRQ(ierr); 930 ierr = MatDenseGetArray(cs_AIB_mat,&cs_AIB);CHKERRQ(ierr); 931 ierr = MatDenseGetArray(benign_AIIm1_ones_mat,&AIIm1_data);CHKERRQ(ierr); 932 ierr = PetscMalloc1(benign_n,&is_p_r);CHKERRQ(ierr); 933 /* compute colsum of A_IB restricted to pressures */ 934 for (i=0;i<benign_n;i++) { 935 Vec benign_AIIm1_ones; 936 PetscScalar *array; 937 const PetscInt *idxs; 938 PetscInt j,nz; 939 940 ierr = ISGlobalToLocalMappingApplyIS(N_to_reor,IS_GTOLM_DROP,benign_zerodiag_subs[i],&is_p_r[i]);CHKERRQ(ierr); 941 ierr = ISGetLocalSize(is_p_r[i],&nz);CHKERRQ(ierr); 942 ierr = ISGetIndices(is_p_r[i],&idxs);CHKERRQ(ierr); 943 for (j=0;j<nz;j++) AIIm1_data[idxs[j]+sizeA*i] = 1.; 944 ierr = ISRestoreIndices(is_p_r[i],&idxs);CHKERRQ(ierr); 945 ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,1,sizeA,AIIm1_data+sizeA*i,&benign_AIIm1_ones);CHKERRQ(ierr); 946 ierr = MatMult(A,benign_AIIm1_ones,v);CHKERRQ(ierr); 947 ierr = VecDestroy(&benign_AIIm1_ones);CHKERRQ(ierr); 948 ierr = VecGetArray(v,&array);CHKERRQ(ierr); 949 for (j=0;j<size_schur;j++) { 950 #if defined(PETSC_USE_COMPLEX) 951 cs_AIB[i*size_schur + j] = (PetscRealPart(array[j+n_I])/nz + PETSC_i*(PetscImaginaryPart(array[j+n_I])/nz)); 952 #else 953 cs_AIB[i*size_schur + j] = array[j+n_I]/nz; 954 #endif 955 } 956 ierr = VecRestoreArray(v,&array);CHKERRQ(ierr); 957 } 958 ierr = MatDenseRestoreArray(cs_AIB_mat,&cs_AIB);CHKERRQ(ierr); 959 ierr = MatDenseRestoreArray(benign_AIIm1_ones_mat,&AIIm1_data);CHKERRQ(ierr); 960 ierr = VecDestroy(&v);CHKERRQ(ierr); 961 ierr = MatSetOption(A,MAT_KEEP_NONZERO_PATTERN,PETSC_FALSE);CHKERRQ(ierr); 962 ierr = MatSetOption(A,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_FALSE);CHKERRQ(ierr); 963 ierr = MatSetOption(A,MAT_NEW_NONZERO_ALLOCATION_ERR,PETSC_FALSE);CHKERRQ(ierr); 964 ierr = MatZeroRowsColumnsIS(A,is_p0_p,1.0,NULL,NULL);CHKERRQ(ierr); 965 ierr = ISDestroy(&is_p0_p);CHKERRQ(ierr); 966 ierr = ISLocalToGlobalMappingDestroy(&N_to_reor);CHKERRQ(ierr); 967 } 968 ierr = MatSetOption(A,MAT_SYMMETRIC,sub_schurs->is_symmetric);CHKERRQ(ierr); 969 ierr = MatSetOption(A,MAT_HERMITIAN,sub_schurs->is_hermitian);CHKERRQ(ierr); 970 ierr = MatSetOption(A,MAT_SPD,sub_schurs->is_posdef);CHKERRQ(ierr); 971 972 /* for complexes, symmetric and hermitian at the same time implies null imaginary part */ 973 use_cholesky = (PetscBool)((use_potr || use_sytr) && sub_schurs->is_hermitian && sub_schurs->is_symmetric); 974 975 /* when using the benign subspace trick, the local Schur complements are SPD */ 976 if (benign_trick) sub_schurs->is_posdef = PETSC_TRUE; 977 978 if (n_I) { 979 IS is_schur; 980 981 if (use_cholesky) { 982 ierr = MatGetFactor(A,sub_schurs->mat_solver_type,MAT_FACTOR_CHOLESKY,&F);CHKERRQ(ierr); 983 } else { 984 ierr = MatGetFactor(A,sub_schurs->mat_solver_type,MAT_FACTOR_LU,&F);CHKERRQ(ierr); 985 } 986 ierr = MatSetErrorIfFailure(A,PETSC_TRUE);CHKERRQ(ierr); 987 988 /* subsets ordered last */ 989 ierr = ISCreateStride(PETSC_COMM_SELF,size_schur,n_I,1,&is_schur);CHKERRQ(ierr); 990 ierr = MatFactorSetSchurIS(F,is_schur);CHKERRQ(ierr); 991 ierr = ISDestroy(&is_schur);CHKERRQ(ierr); 992 993 /* factorization step */ 994 if (use_cholesky) { 995 ierr = MatCholeskyFactorSymbolic(F,A,NULL,NULL);CHKERRQ(ierr); 996 #if defined(PETSC_HAVE_MUMPS) /* be sure that icntl 19 is not set by command line */ 997 ierr = MatMumpsSetIcntl(F,19,2);CHKERRQ(ierr); 998 #endif 999 ierr = MatCholeskyFactorNumeric(F,A,NULL);CHKERRQ(ierr); 1000 S_lower_triangular = PETSC_TRUE; 1001 } else { 1002 ierr = MatLUFactorSymbolic(F,A,NULL,NULL,NULL);CHKERRQ(ierr); 1003 #if defined(PETSC_HAVE_MUMPS) /* be sure that icntl 19 is not set by command line */ 1004 ierr = MatMumpsSetIcntl(F,19,3);CHKERRQ(ierr); 1005 #endif 1006 ierr = MatLUFactorNumeric(F,A,NULL);CHKERRQ(ierr); 1007 } 1008 ierr = MatViewFromOptions(F,(PetscObject)A,"-mat_factor_view");CHKERRQ(ierr); 1009 1010 if (matl_dbg_viewer) { 1011 Mat S; 1012 IS is; 1013 1014 ierr = PetscObjectSetName((PetscObject)A,"A");CHKERRQ(ierr); 1015 ierr = MatView(A,matl_dbg_viewer);CHKERRQ(ierr); 1016 ierr = MatFactorCreateSchurComplement(F,&S,NULL);CHKERRQ(ierr); 1017 ierr = PetscObjectSetName((PetscObject)S,"S");CHKERRQ(ierr); 1018 ierr = MatView(S,matl_dbg_viewer);CHKERRQ(ierr); 1019 ierr = MatDestroy(&S);CHKERRQ(ierr); 1020 ierr = ISCreateStride(PETSC_COMM_SELF,n_I,0,1,&is);CHKERRQ(ierr); 1021 ierr = PetscObjectSetName((PetscObject)is,"I");CHKERRQ(ierr); 1022 ierr = ISView(is,matl_dbg_viewer);CHKERRQ(ierr); 1023 ierr = ISDestroy(&is);CHKERRQ(ierr); 1024 ierr = ISCreateStride(PETSC_COMM_SELF,size_schur,n_I,1,&is);CHKERRQ(ierr); 1025 ierr = PetscObjectSetName((PetscObject)is,"B");CHKERRQ(ierr); 1026 ierr = ISView(is,matl_dbg_viewer);CHKERRQ(ierr); 1027 ierr = ISDestroy(&is);CHKERRQ(ierr); 1028 ierr = PetscObjectSetName((PetscObject)is_A_all,"IA");CHKERRQ(ierr); 1029 ierr = ISView(is_A_all,matl_dbg_viewer);CHKERRQ(ierr); 1030 } 1031 1032 /* get explicit Schur Complement computed during numeric factorization */ 1033 ierr = MatFactorGetSchurComplement(F,&S_all,NULL);CHKERRQ(ierr); 1034 ierr = MatSetOption(S_all,MAT_SPD,sub_schurs->is_posdef);CHKERRQ(ierr); 1035 ierr = MatSetOption(S_all,MAT_HERMITIAN,sub_schurs->is_hermitian);CHKERRQ(ierr); 1036 1037 /* we can reuse the solvers if we are not using the economic version */ 1038 reuse_solvers = (PetscBool)(reuse_solvers && !economic); 1039 factor_workaround = (PetscBool)(reuse_solvers && factor_workaround); 1040 if (!sub_schurs->is_posdef && factor_workaround && compute_Stilda && size_active_schur) 1041 reuse_solvers = factor_workaround = PETSC_FALSE; 1042 1043 solver_S = PETSC_TRUE; 1044 1045 /* update the Schur complement with the change of basis on the pressures */ 1046 if (benign_n) { 1047 PetscScalar *S_data,*cs_AIB,*AIIm1_data; 1048 Mat S2 = NULL,S3 = NULL; /* dbg */ 1049 PetscScalar *S2_data,*S3_data; /* dbg */ 1050 Vec v; 1051 PetscInt sizeA; 1052 1053 ierr = MatDenseGetArray(S_all,&S_data);CHKERRQ(ierr); 1054 ierr = MatCreateVecs(A,&v,NULL);CHKERRQ(ierr); 1055 ierr = VecGetSize(v,&sizeA);CHKERRQ(ierr); 1056 #if defined(PETSC_HAVE_MUMPS) 1057 ierr = MatMumpsSetIcntl(F,26,0);CHKERRQ(ierr); 1058 #endif 1059 #if defined(PETSC_HAVE_MKL_PARDISO) 1060 ierr = MatMkl_PardisoSetCntl(F,70,1);CHKERRQ(ierr); 1061 #endif 1062 ierr = MatDenseGetArray(cs_AIB_mat,&cs_AIB);CHKERRQ(ierr); 1063 ierr = MatDenseGetArray(benign_AIIm1_ones_mat,&AIIm1_data);CHKERRQ(ierr); 1064 if (matl_dbg_viewer) { 1065 ierr = MatDuplicate(S_all,MAT_DO_NOT_COPY_VALUES,&S2);CHKERRQ(ierr); 1066 ierr = MatDuplicate(S_all,MAT_DO_NOT_COPY_VALUES,&S3);CHKERRQ(ierr); 1067 ierr = MatDenseGetArray(S2,&S2_data);CHKERRQ(ierr); 1068 ierr = MatDenseGetArray(S3,&S3_data);CHKERRQ(ierr); 1069 } 1070 for (i=0;i<benign_n;i++) { 1071 Vec benign_AIIm1_ones; 1072 PetscScalar *array,sum = 0.,one = 1.,*sums; 1073 const PetscInt *idxs; 1074 PetscInt k,j,nz; 1075 PetscBLASInt B_k,B_n; 1076 1077 ierr = PetscCalloc1(benign_n,&sums);CHKERRQ(ierr); 1078 ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,1,sizeA,AIIm1_data+sizeA*i,&benign_AIIm1_ones);CHKERRQ(ierr); 1079 ierr = VecCopy(benign_AIIm1_ones,v);CHKERRQ(ierr); 1080 ierr = MatSolve(F,v,benign_AIIm1_ones);CHKERRQ(ierr); 1081 /* p0 dofs (eliminated) are excluded from the sums */ 1082 for (k=0;k<benign_n;k++) { 1083 ierr = ISGetLocalSize(is_p_r[k],&nz);CHKERRQ(ierr); 1084 ierr = ISGetIndices(is_p_r[k],&idxs);CHKERRQ(ierr); 1085 for (j=0;j<nz-1;j++) sums[k] -= AIIm1_data[idxs[j]+sizeA*i]; 1086 ierr = ISRestoreIndices(is_p_r[k],&idxs);CHKERRQ(ierr); 1087 } 1088 ierr = MatMult(A,benign_AIIm1_ones,v);CHKERRQ(ierr); 1089 ierr = VecGetArray(v,&array);CHKERRQ(ierr); 1090 if (matl_dbg_viewer) { 1091 Vec vv; 1092 char name[16]; 1093 1094 ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,1,size_schur,array+n_I,&vv);CHKERRQ(ierr); 1095 ierr = PetscSNPrintf(name,sizeof(name),"Pvs%D",i);CHKERRQ(ierr); 1096 ierr = PetscObjectSetName((PetscObject)vv,name);CHKERRQ(ierr); 1097 ierr = VecView(vv,matl_dbg_viewer);CHKERRQ(ierr); 1098 ierr = VecDestroy(&benign_AIIm1_ones);CHKERRQ(ierr); 1099 } 1100 /* perform sparse rank updates on symmetric Schur (TODO: move outside of the loop?) */ 1101 /* cs_AIB already scaled by 1./nz */ 1102 B_k = 1; 1103 for (k=0;k<benign_n;k++) { 1104 sum = sums[k]; 1105 ierr = PetscBLASIntCast(size_schur,&B_n);CHKERRQ(ierr); 1106 1107 if (PetscAbsScalar(sum) == 0.0) continue; 1108 if (k == i) { 1109 PetscStackCallBLAS("BLASsyrk",BLASsyrk_("L","N",&B_n,&B_k,&sum,cs_AIB+i*size_schur,&B_n,&one,S_data,&B_n)); 1110 if (matl_dbg_viewer) { 1111 PetscStackCallBLAS("BLASsyrk",BLASsyrk_("L","N",&B_n,&B_k,&sum,cs_AIB+i*size_schur,&B_n,&one,S3_data,&B_n)); 1112 } 1113 } else { /* XXX Is it correct to use symmetric rank-2 update with half of the sum? */ 1114 sum /= 2.0; 1115 PetscStackCallBLAS("BLASsyr2k",BLASsyr2k_("L","N",&B_n,&B_k,&sum,cs_AIB+k*size_schur,&B_n,cs_AIB+i*size_schur,&B_n,&one,S_data,&B_n)); 1116 if (matl_dbg_viewer) { 1117 PetscStackCallBLAS("BLASsyr2k",BLASsyr2k_("L","N",&B_n,&B_k,&sum,cs_AIB+k*size_schur,&B_n,cs_AIB+i*size_schur,&B_n,&one,S3_data,&B_n)); 1118 } 1119 } 1120 } 1121 sum = 1.; 1122 PetscStackCallBLAS("BLASsyr2k",BLASsyr2k_("L","N",&B_n,&B_k,&sum,array+n_I,&B_n,cs_AIB+i*size_schur,&B_n,&one,S_data,&B_n)); 1123 if (matl_dbg_viewer) { 1124 PetscStackCallBLAS("BLASsyr2k",BLASsyr2k_("L","N",&B_n,&B_k,&sum,array+n_I,&B_n,cs_AIB+i*size_schur,&B_n,&one,S2_data,&B_n)); 1125 } 1126 ierr = VecRestoreArray(v,&array);CHKERRQ(ierr); 1127 /* set p0 entry of AIIm1_ones to zero */ 1128 ierr = ISGetLocalSize(is_p_r[i],&nz);CHKERRQ(ierr); 1129 ierr = ISGetIndices(is_p_r[i],&idxs);CHKERRQ(ierr); 1130 for (j=0;j<benign_n;j++) AIIm1_data[idxs[nz-1]+sizeA*j] = 0.; 1131 ierr = ISRestoreIndices(is_p_r[i],&idxs);CHKERRQ(ierr); 1132 ierr = VecDestroy(&benign_AIIm1_ones);CHKERRQ(ierr); 1133 ierr = PetscFree(sums);CHKERRQ(ierr); 1134 } 1135 if (matl_dbg_viewer) { 1136 ierr = MatDenseRestoreArray(S2,&S2_data);CHKERRQ(ierr); 1137 ierr = MatDenseRestoreArray(S3,&S3_data);CHKERRQ(ierr); 1138 } 1139 if (!S_lower_triangular) { /* I need to expand the upper triangular data (column oriented) */ 1140 PetscInt k,j; 1141 for (k=0;k<size_schur;k++) { 1142 for (j=k;j<size_schur;j++) { 1143 S_data[j*size_schur+k] = PetscConj(S_data[k*size_schur+j]); 1144 } 1145 } 1146 } 1147 1148 /* restore defaults */ 1149 #if defined(PETSC_HAVE_MUMPS) 1150 ierr = MatMumpsSetIcntl(F,26,-1);CHKERRQ(ierr); 1151 #endif 1152 #if defined(PETSC_HAVE_MKL_PARDISO) 1153 ierr = MatMkl_PardisoSetCntl(F,70,0);CHKERRQ(ierr); 1154 #endif 1155 ierr = MatDenseRestoreArray(cs_AIB_mat,&cs_AIB);CHKERRQ(ierr); 1156 ierr = MatDenseRestoreArray(benign_AIIm1_ones_mat,&AIIm1_data);CHKERRQ(ierr); 1157 ierr = VecDestroy(&v);CHKERRQ(ierr); 1158 ierr = MatDenseRestoreArray(S_all,&S_data);CHKERRQ(ierr); 1159 if (matl_dbg_viewer) { 1160 Mat S; 1161 1162 ierr = MatFactorRestoreSchurComplement(F,&S_all,MAT_FACTOR_SCHUR_UNFACTORED);CHKERRQ(ierr); 1163 ierr = MatFactorCreateSchurComplement(F,&S,NULL);CHKERRQ(ierr); 1164 ierr = PetscObjectSetName((PetscObject)S,"Sb");CHKERRQ(ierr); 1165 ierr = MatView(S,matl_dbg_viewer);CHKERRQ(ierr); 1166 ierr = MatDestroy(&S);CHKERRQ(ierr); 1167 ierr = PetscObjectSetName((PetscObject)S2,"S2P");CHKERRQ(ierr); 1168 ierr = MatView(S2,matl_dbg_viewer);CHKERRQ(ierr); 1169 ierr = PetscObjectSetName((PetscObject)S3,"S3P");CHKERRQ(ierr); 1170 ierr = MatView(S3,matl_dbg_viewer);CHKERRQ(ierr); 1171 ierr = PetscObjectSetName((PetscObject)cs_AIB_mat,"cs");CHKERRQ(ierr); 1172 ierr = MatView(cs_AIB_mat,matl_dbg_viewer);CHKERRQ(ierr); 1173 ierr = MatFactorGetSchurComplement(F,&S_all,NULL);CHKERRQ(ierr); 1174 } 1175 ierr = MatDestroy(&S2);CHKERRQ(ierr); 1176 ierr = MatDestroy(&S3);CHKERRQ(ierr); 1177 } 1178 if (!reuse_solvers) { 1179 for (i=0;i<benign_n;i++) { 1180 ierr = ISDestroy(&is_p_r[i]);CHKERRQ(ierr); 1181 } 1182 ierr = PetscFree(is_p_r);CHKERRQ(ierr); 1183 ierr = MatDestroy(&cs_AIB_mat);CHKERRQ(ierr); 1184 ierr = MatDestroy(&benign_AIIm1_ones_mat);CHKERRQ(ierr); 1185 } 1186 } else { /* we can't use MatFactor when size_schur == size_of_the_problem */ 1187 ierr = MatConvert(A,MATSEQDENSE,MAT_INITIAL_MATRIX,&S_all);CHKERRQ(ierr); 1188 reuse_solvers = PETSC_FALSE; /* TODO: why we can't reuse the solvers here? */ 1189 factor_workaround = PETSC_FALSE; 1190 solver_S = PETSC_FALSE; 1191 } 1192 1193 if (reuse_solvers) { 1194 Mat A_II,Afake; 1195 Vec vec1_B; 1196 PCBDDCReuseSolvers msolv_ctx; 1197 PetscInt n_R; 1198 1199 if (sub_schurs->reuse_solver) { 1200 ierr = PCBDDCReuseSolversReset(sub_schurs->reuse_solver);CHKERRQ(ierr); 1201 } else { 1202 ierr = PetscNew(&sub_schurs->reuse_solver);CHKERRQ(ierr); 1203 } 1204 msolv_ctx = sub_schurs->reuse_solver; 1205 ierr = MatSchurComplementGetSubMatrices(sub_schurs->S,&A_II,NULL,NULL,NULL,NULL);CHKERRQ(ierr); 1206 ierr = PetscObjectReference((PetscObject)F);CHKERRQ(ierr); 1207 msolv_ctx->F = F; 1208 ierr = MatCreateVecs(F,&msolv_ctx->sol,NULL);CHKERRQ(ierr); 1209 /* currently PETSc has no support for MatSolve(F,x,x), so cheat and let rhs and sol share the same memory */ 1210 { 1211 PetscScalar *array; 1212 PetscInt n; 1213 1214 ierr = VecGetLocalSize(msolv_ctx->sol,&n);CHKERRQ(ierr); 1215 ierr = VecGetArray(msolv_ctx->sol,&array);CHKERRQ(ierr); 1216 ierr = VecCreateSeqWithArray(PetscObjectComm((PetscObject)msolv_ctx->sol),1,n,array,&msolv_ctx->rhs);CHKERRQ(ierr); 1217 ierr = VecRestoreArray(msolv_ctx->sol,&array);CHKERRQ(ierr); 1218 } 1219 msolv_ctx->has_vertices = schur_has_vertices; 1220 1221 /* interior solver */ 1222 ierr = PCCreate(PetscObjectComm((PetscObject)A_II),&msolv_ctx->interior_solver);CHKERRQ(ierr); 1223 ierr = PCSetOperators(msolv_ctx->interior_solver,A_II,A_II);CHKERRQ(ierr); 1224 ierr = PCSetType(msolv_ctx->interior_solver,PCSHELL);CHKERRQ(ierr); 1225 ierr = PCShellSetName(msolv_ctx->interior_solver,"Interior solver (w/o Schur factorization)");CHKERRQ(ierr); 1226 ierr = PCShellSetContext(msolv_ctx->interior_solver,msolv_ctx);CHKERRQ(ierr); 1227 ierr = PCShellSetView(msolv_ctx->interior_solver,PCBDDCReuseSolvers_View);CHKERRQ(ierr); 1228 ierr = PCShellSetApply(msolv_ctx->interior_solver,PCBDDCReuseSolvers_Interior);CHKERRQ(ierr); 1229 ierr = PCShellSetApplyTranspose(msolv_ctx->interior_solver,PCBDDCReuseSolvers_InteriorTranspose);CHKERRQ(ierr); 1230 1231 /* correction solver */ 1232 ierr = PCCreate(PetscObjectComm((PetscObject)A_II),&msolv_ctx->correction_solver);CHKERRQ(ierr); 1233 ierr = PCSetType(msolv_ctx->correction_solver,PCSHELL);CHKERRQ(ierr); 1234 ierr = PCShellSetName(msolv_ctx->correction_solver,"Correction solver (with Schur factorization)");CHKERRQ(ierr); 1235 ierr = PCShellSetContext(msolv_ctx->correction_solver,msolv_ctx);CHKERRQ(ierr); 1236 ierr = PCShellSetView(msolv_ctx->interior_solver,PCBDDCReuseSolvers_View);CHKERRQ(ierr); 1237 ierr = PCShellSetApply(msolv_ctx->correction_solver,PCBDDCReuseSolvers_Correction);CHKERRQ(ierr); 1238 ierr = PCShellSetApplyTranspose(msolv_ctx->correction_solver,PCBDDCReuseSolvers_CorrectionTranspose);CHKERRQ(ierr); 1239 1240 /* scatter and vecs for Schur complement solver */ 1241 ierr = MatCreateVecs(S_all,&msolv_ctx->sol_B,&msolv_ctx->rhs_B);CHKERRQ(ierr); 1242 ierr = MatCreateVecs(sub_schurs->S,&vec1_B,NULL);CHKERRQ(ierr); 1243 if (!schur_has_vertices) { 1244 ierr = ISGlobalToLocalMappingApplyIS(sub_schurs->BtoNmap,IS_GTOLM_DROP,is_A_all,&msolv_ctx->is_B);CHKERRQ(ierr); 1245 ierr = VecScatterCreate(vec1_B,msolv_ctx->is_B,msolv_ctx->sol_B,NULL,&msolv_ctx->correction_scatter_B);CHKERRQ(ierr); 1246 ierr = PetscObjectReference((PetscObject)is_A_all);CHKERRQ(ierr); 1247 msolv_ctx->is_R = is_A_all; 1248 } else { 1249 IS is_B_all; 1250 const PetscInt* idxs; 1251 PetscInt dual,n_v,n; 1252 1253 ierr = ISGetLocalSize(sub_schurs->is_vertices,&n_v);CHKERRQ(ierr); 1254 dual = size_schur - n_v; 1255 ierr = ISGetLocalSize(is_A_all,&n);CHKERRQ(ierr); 1256 ierr = ISGetIndices(is_A_all,&idxs);CHKERRQ(ierr); 1257 ierr = ISCreateGeneral(PetscObjectComm((PetscObject)is_A_all),dual,idxs+n_I,PETSC_COPY_VALUES,&is_B_all);CHKERRQ(ierr); 1258 ierr = ISGlobalToLocalMappingApplyIS(sub_schurs->BtoNmap,IS_GTOLM_DROP,is_B_all,&msolv_ctx->is_B);CHKERRQ(ierr); 1259 ierr = ISDestroy(&is_B_all);CHKERRQ(ierr); 1260 ierr = ISCreateStride(PetscObjectComm((PetscObject)is_A_all),dual,0,1,&is_B_all);CHKERRQ(ierr); 1261 ierr = VecScatterCreate(vec1_B,msolv_ctx->is_B,msolv_ctx->sol_B,is_B_all,&msolv_ctx->correction_scatter_B);CHKERRQ(ierr); 1262 ierr = ISDestroy(&is_B_all);CHKERRQ(ierr); 1263 ierr = ISCreateGeneral(PetscObjectComm((PetscObject)is_A_all),n-n_v,idxs,PETSC_COPY_VALUES,&msolv_ctx->is_R);CHKERRQ(ierr); 1264 ierr = ISRestoreIndices(is_A_all,&idxs);CHKERRQ(ierr); 1265 } 1266 ierr = ISGetLocalSize(msolv_ctx->is_R,&n_R);CHKERRQ(ierr); 1267 ierr = MatCreateSeqAIJ(PETSC_COMM_SELF,n_R,n_R,0,NULL,&Afake);CHKERRQ(ierr); 1268 ierr = MatAssemblyBegin(Afake,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 1269 ierr = MatAssemblyEnd(Afake,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 1270 ierr = PCSetOperators(msolv_ctx->correction_solver,Afake,Afake);CHKERRQ(ierr); 1271 ierr = MatDestroy(&Afake);CHKERRQ(ierr); 1272 ierr = VecDestroy(&vec1_B);CHKERRQ(ierr); 1273 1274 /* communicate benign info to solver context */ 1275 if (benign_n) { 1276 PetscScalar *array; 1277 1278 msolv_ctx->benign_n = benign_n; 1279 msolv_ctx->benign_zerodiag_subs = is_p_r; 1280 ierr = PetscMalloc1(benign_n,&msolv_ctx->benign_save_vals);CHKERRQ(ierr); 1281 msolv_ctx->benign_csAIB = cs_AIB_mat; 1282 ierr = MatCreateVecs(cs_AIB_mat,&msolv_ctx->benign_corr_work,NULL);CHKERRQ(ierr); 1283 ierr = VecGetArray(msolv_ctx->benign_corr_work,&array);CHKERRQ(ierr); 1284 ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,1,size_schur,array,&msolv_ctx->benign_dummy_schur_vec);CHKERRQ(ierr); 1285 ierr = VecRestoreArray(msolv_ctx->benign_corr_work,&array);CHKERRQ(ierr); 1286 msolv_ctx->benign_AIIm1ones = benign_AIIm1_ones_mat; 1287 } 1288 } else { 1289 if (sub_schurs->reuse_solver) { 1290 ierr = PCBDDCReuseSolversReset(sub_schurs->reuse_solver);CHKERRQ(ierr); 1291 } 1292 ierr = PetscFree(sub_schurs->reuse_solver);CHKERRQ(ierr); 1293 } 1294 ierr = MatDestroy(&A);CHKERRQ(ierr); 1295 ierr = ISDestroy(&is_A_all);CHKERRQ(ierr); 1296 1297 /* Work arrays */ 1298 ierr = PetscMalloc2(max_subset_size,&dummy_idx,max_subset_size*max_subset_size,&work);CHKERRQ(ierr); 1299 1300 /* matrices for deluxe scaling and adaptive selection */ 1301 if (compute_Stilda) { 1302 if (!sub_schurs->sum_S_Ej_tilda_all) { 1303 ierr = MatDuplicate(sub_schurs->S_Ej_all,MAT_SHARE_NONZERO_PATTERN,&sub_schurs->sum_S_Ej_tilda_all);CHKERRQ(ierr); 1304 } 1305 if (!sub_schurs->sum_S_Ej_inv_all && deluxe) { 1306 ierr = MatDuplicate(sub_schurs->S_Ej_all,MAT_SHARE_NONZERO_PATTERN,&sub_schurs->sum_S_Ej_inv_all);CHKERRQ(ierr); 1307 } 1308 } 1309 1310 /* S_Ej_all */ 1311 cum = cum2 = 0; 1312 ierr = MatDenseGetArray(S_all,&S_data);CHKERRQ(ierr); 1313 for (i=0;i<sub_schurs->n_subs;i++) { 1314 PetscInt j; 1315 1316 /* get S_E */ 1317 ierr = ISGetLocalSize(sub_schurs->is_subs[i],&subset_size);CHKERRQ(ierr); 1318 if (S_lower_triangular) { /* I need to expand the upper triangular data (column oriented) */ 1319 PetscInt k; 1320 for (k=0;k<subset_size;k++) { 1321 for (j=k;j<subset_size;j++) { 1322 work[k*subset_size+j] = S_data[cum2+k*size_schur+j]; 1323 work[j*subset_size+k] = PetscConj(S_data[cum2+k*size_schur+j]); 1324 } 1325 } 1326 } else { /* just copy to workspace */ 1327 PetscInt k; 1328 for (k=0;k<subset_size;k++) { 1329 for (j=0;j<subset_size;j++) { 1330 work[k*subset_size+j] = S_data[cum2+k*size_schur+j]; 1331 } 1332 } 1333 } 1334 /* insert S_E values */ 1335 for (j=0;j<subset_size;j++) dummy_idx[j] = cum+j; 1336 if (sub_schurs->change) { 1337 Mat change_sub,SEj,T; 1338 1339 /* change basis */ 1340 ierr = KSPGetOperators(sub_schurs->change[i],&change_sub,NULL);CHKERRQ(ierr); 1341 ierr = MatCreateSeqDense(PETSC_COMM_SELF,subset_size,subset_size,work,&SEj);CHKERRQ(ierr); 1342 if (!sub_schurs->change_with_qr) { /* currently there's no support for PtAP with P SeqAIJ */ 1343 Mat T2; 1344 ierr = MatTransposeMatMult(change_sub,SEj,MAT_INITIAL_MATRIX,1.0,&T2);CHKERRQ(ierr); 1345 ierr = MatMatMult(T2,change_sub,MAT_INITIAL_MATRIX,1.0,&T);CHKERRQ(ierr); 1346 ierr = MatConvert(T,MATSEQDENSE,MAT_INPLACE_MATRIX,&T);CHKERRQ(ierr); 1347 ierr = MatDestroy(&T2);CHKERRQ(ierr); 1348 } else { 1349 ierr = MatPtAP(SEj,change_sub,MAT_INITIAL_MATRIX,1.0,&T);CHKERRQ(ierr); 1350 } 1351 ierr = MatCopy(T,SEj,SAME_NONZERO_PATTERN);CHKERRQ(ierr); 1352 ierr = MatDestroy(&T);CHKERRQ(ierr); 1353 ierr = MatZeroRowsColumnsIS(SEj,sub_schurs->change_primal_sub[i],1.0,NULL,NULL);CHKERRQ(ierr); 1354 ierr = MatDestroy(&SEj);CHKERRQ(ierr); 1355 } 1356 if (deluxe) { 1357 ierr = MatSetValues(sub_schurs->S_Ej_all,subset_size,dummy_idx,subset_size,dummy_idx,work,INSERT_VALUES);CHKERRQ(ierr); 1358 /* if adaptivity is requested, invert S_E blocks */ 1359 if (compute_Stilda) { 1360 PetscInt k; 1361 1362 ierr = PetscBLASIntCast(subset_size,&B_N);CHKERRQ(ierr); 1363 ierr = PetscFPTrapPush(PETSC_FP_TRAP_OFF);CHKERRQ(ierr); 1364 if (use_potr) { 1365 PetscStackCallBLAS("LAPACKpotrf",LAPACKpotrf_("L",&B_N,work,&B_N,&B_ierr)); 1366 if (B_ierr) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_LIB,"Error in POTRF Lapack routine %d",(int)B_ierr); 1367 PetscStackCallBLAS("LAPACKpotri",LAPACKpotri_("L",&B_N,work,&B_N,&B_ierr)); 1368 if (B_ierr) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_LIB,"Error in POTRI Lapack routine %d",(int)B_ierr); 1369 for (k=0;k<subset_size;k++) { 1370 for (j=k;j<subset_size;j++) { 1371 work[j*subset_size+k] = work[k*subset_size+j]; 1372 } 1373 } 1374 } else if (use_sytr) { 1375 PetscStackCallBLAS("LAPACKsytrf",LAPACKsytrf_("L",&B_N,work,&B_N,pivots,Bwork,&B_lwork,&B_ierr)); 1376 if (B_ierr) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_LIB,"Error in SYTRF Lapack routine %d",(int)B_ierr); 1377 PetscStackCallBLAS("LAPACKsytri",LAPACKsytri_("L",&B_N,work,&B_N,pivots,Bwork,&B_ierr)); 1378 if (B_ierr) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_LIB,"Error in SYTRI Lapack routine %d",(int)B_ierr); 1379 for (k=0;k<subset_size;k++) { 1380 for (j=k;j<subset_size;j++) { 1381 work[j*subset_size+k] = work[k*subset_size+j]; 1382 } 1383 } 1384 } else { 1385 PetscStackCallBLAS("LAPACKgetrf",LAPACKgetrf_(&B_N,&B_N,work,&B_N,pivots,&B_ierr)); 1386 if (B_ierr) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_LIB,"Error in GETRF Lapack routine %d",(int)B_ierr); 1387 PetscStackCallBLAS("LAPACKgetri",LAPACKgetri_(&B_N,work,&B_N,pivots,Bwork,&B_lwork,&B_ierr)); 1388 if (B_ierr) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_LIB,"Error in GETRI Lapack routine %d",(int)B_ierr); 1389 } 1390 ierr = PetscLogFlops(1.0*subset_size*subset_size*subset_size);CHKERRQ(ierr); 1391 ierr = PetscFPTrapPop();CHKERRQ(ierr); 1392 ierr = MatSetValues(sub_schurs->sum_S_Ej_inv_all,subset_size,dummy_idx,subset_size,dummy_idx,work,INSERT_VALUES);CHKERRQ(ierr); 1393 } 1394 } else if (compute_Stilda) { /* not using deluxe */ 1395 Mat SEj; 1396 Vec D; 1397 PetscScalar *array; 1398 1399 ierr = MatCreateSeqDense(PETSC_COMM_SELF,subset_size,subset_size,work,&SEj);CHKERRQ(ierr); 1400 ierr = VecGetArray(Dall,&array);CHKERRQ(ierr); 1401 ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,1,subset_size,array+cum,&D);CHKERRQ(ierr); 1402 ierr = VecRestoreArray(Dall,&array);CHKERRQ(ierr); 1403 ierr = VecShift(D,-1.);CHKERRQ(ierr); 1404 ierr = MatDiagonalScale(SEj,D,D);CHKERRQ(ierr); 1405 ierr = MatDestroy(&SEj);CHKERRQ(ierr); 1406 ierr = VecDestroy(&D);CHKERRQ(ierr); 1407 ierr = MatSetValues(sub_schurs->S_Ej_all,subset_size,dummy_idx,subset_size,dummy_idx,work,INSERT_VALUES);CHKERRQ(ierr); 1408 } 1409 cum += subset_size; 1410 cum2 += subset_size*(size_schur + 1); 1411 } 1412 ierr = MatDenseRestoreArray(S_all,&S_data);CHKERRQ(ierr); 1413 1414 if (solver_S) { 1415 ierr = MatFactorRestoreSchurComplement(F,&S_all,MAT_FACTOR_SCHUR_UNFACTORED);CHKERRQ(ierr); 1416 } 1417 1418 schur_factor = NULL; 1419 if (compute_Stilda && size_active_schur) { 1420 1421 if (sub_schurs->n_subs == 1 && size_schur == size_active_schur && deluxe) { /* we already computed the inverse */ 1422 PetscInt j; 1423 for (j=0;j<size_schur;j++) dummy_idx[j] = j; 1424 ierr = MatSetValues(sub_schurs->sum_S_Ej_tilda_all,size_schur,dummy_idx,size_schur,dummy_idx,work,INSERT_VALUES);CHKERRQ(ierr); 1425 } else { 1426 Mat S_all_inv=NULL; 1427 if (solver_S) { 1428 /* for adaptive selection we need S^-1; for solver reusage we need S_\Delta\Delta^-1. 1429 The latter is not the principal subminor for S^-1. However, the factors can be reused since S_\Delta\Delta is the leading principal submatrix of S */ 1430 if (factor_workaround) {/* invert without calling MatFactorInvertSchurComplement, since we are hacking */ 1431 PetscScalar *data; 1432 PetscInt nd = 0; 1433 1434 if (!use_potr) { 1435 SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Factor update not yet implemented for non SPD matrices"); 1436 } 1437 ierr = MatFactorGetSchurComplement(F,&S_all_inv,NULL);CHKERRQ(ierr); 1438 ierr = MatDenseGetArray(S_all_inv,&data);CHKERRQ(ierr); 1439 if (sub_schurs->is_dir) { /* dirichlet dofs could have different scalings */ 1440 ierr = ISGetLocalSize(sub_schurs->is_dir,&nd);CHKERRQ(ierr); 1441 } 1442 1443 /* factor and invert activedofs and vertices (dirichlet dofs does not contribute) */ 1444 if (schur_has_vertices) { 1445 Mat M; 1446 PetscScalar *tdata; 1447 PetscInt nv = 0, news; 1448 1449 ierr = ISGetLocalSize(sub_schurs->is_vertices,&nv);CHKERRQ(ierr); 1450 news = size_active_schur + nv; 1451 ierr = PetscCalloc1(news*news,&tdata);CHKERRQ(ierr); 1452 for (i=0;i<size_active_schur;i++) { 1453 ierr = PetscMemcpy(tdata+i*(news+1),data+i*(size_schur+1),(size_active_schur-i)*sizeof(PetscScalar));CHKERRQ(ierr); 1454 ierr = PetscMemcpy(tdata+i*(news+1)+size_active_schur-i,data+i*size_schur+size_active_schur+nd,nv*sizeof(PetscScalar));CHKERRQ(ierr); 1455 } 1456 for (i=0;i<nv;i++) { 1457 PetscInt k = i+size_active_schur; 1458 ierr = PetscMemcpy(tdata+k*(news+1),data+(k+nd)*(size_schur+1),(nv-i)*sizeof(PetscScalar));CHKERRQ(ierr); 1459 } 1460 1461 ierr = MatCreateSeqDense(PETSC_COMM_SELF,news,news,tdata,&M);CHKERRQ(ierr); 1462 ierr = MatSetOption(M,MAT_SPD,PETSC_TRUE);CHKERRQ(ierr); 1463 ierr = MatCholeskyFactor(M,NULL,NULL);CHKERRQ(ierr); 1464 /* save the factors */ 1465 cum = 0; 1466 ierr = PetscMalloc1((size_active_schur*(size_active_schur +1))/2+nd,&schur_factor);CHKERRQ(ierr); 1467 for (i=0;i<size_active_schur;i++) { 1468 ierr = PetscMemcpy(schur_factor+cum,tdata+i*(news+1),(size_active_schur-i)*sizeof(PetscScalar));CHKERRQ(ierr); 1469 cum += size_active_schur - i; 1470 } 1471 for (i=0;i<nd;i++) schur_factor[cum+i] = PetscSqrtReal(PetscRealPart(data[(i+size_active_schur)*(size_schur+1)])); 1472 ierr = MatSeqDenseInvertFactors_Private(M);CHKERRQ(ierr); 1473 /* move back just the active dofs to the Schur complement */ 1474 for (i=0;i<size_active_schur;i++) { 1475 ierr = PetscMemcpy(data+i*size_schur,tdata+i*news,size_active_schur*sizeof(PetscScalar));CHKERRQ(ierr); 1476 } 1477 ierr = PetscFree(tdata);CHKERRQ(ierr); 1478 ierr = MatDestroy(&M);CHKERRQ(ierr); 1479 } else { /* we can factorize and invert just the activedofs */ 1480 Mat M; 1481 PetscScalar *aux; 1482 1483 ierr = PetscMalloc1(nd,&aux);CHKERRQ(ierr); 1484 for (i=0;i<nd;i++) aux[i] = 1.0/data[(i+size_active_schur)*(size_schur+1)]; 1485 ierr = MatCreateSeqDense(PETSC_COMM_SELF,size_active_schur,size_active_schur,data,&M);CHKERRQ(ierr); 1486 ierr = MatSeqDenseSetLDA(M,size_schur);CHKERRQ(ierr); 1487 ierr = MatSetOption(M,MAT_SPD,PETSC_TRUE);CHKERRQ(ierr); 1488 ierr = MatCholeskyFactor(M,NULL,NULL);CHKERRQ(ierr); 1489 ierr = MatSeqDenseInvertFactors_Private(M);CHKERRQ(ierr); 1490 ierr = MatDestroy(&M);CHKERRQ(ierr); 1491 ierr = MatCreateSeqDense(PETSC_COMM_SELF,size_schur,nd,data+size_active_schur*size_schur,&M);CHKERRQ(ierr); 1492 ierr = MatZeroEntries(M);CHKERRQ(ierr); 1493 ierr = MatDestroy(&M);CHKERRQ(ierr); 1494 ierr = MatCreateSeqDense(PETSC_COMM_SELF,nd,size_schur,data+size_active_schur,&M);CHKERRQ(ierr); 1495 ierr = MatSeqDenseSetLDA(M,size_schur);CHKERRQ(ierr); 1496 ierr = MatZeroEntries(M);CHKERRQ(ierr); 1497 ierr = MatDestroy(&M);CHKERRQ(ierr); 1498 for (i=0;i<nd;i++) data[(i+size_active_schur)*(size_schur+1)] = aux[i]; 1499 ierr = PetscFree(aux);CHKERRQ(ierr); 1500 } 1501 ierr = MatDenseRestoreArray(S_all_inv,&data);CHKERRQ(ierr); 1502 } else { /* use MatFactor calls to invert S */ 1503 ierr = MatFactorInvertSchurComplement(F);CHKERRQ(ierr); 1504 ierr = MatFactorGetSchurComplement(F,&S_all_inv,NULL);CHKERRQ(ierr); 1505 } 1506 } else { /* we need to invert explicitly since we are not using MatFactor for S */ 1507 ierr = PetscObjectReference((PetscObject)S_all);CHKERRQ(ierr); 1508 S_all_inv = S_all; 1509 ierr = MatDenseGetArray(S_all_inv,&S_data);CHKERRQ(ierr); 1510 ierr = PetscBLASIntCast(size_schur,&B_N);CHKERRQ(ierr); 1511 ierr = PetscFPTrapPush(PETSC_FP_TRAP_OFF);CHKERRQ(ierr); 1512 if (use_potr) { 1513 PetscStackCallBLAS("LAPACKpotrf",LAPACKpotrf_("L",&B_N,S_data,&B_N,&B_ierr)); 1514 if (B_ierr) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_LIB,"Error in POTRF Lapack routine %d",(int)B_ierr); 1515 PetscStackCallBLAS("LAPACKpotri",LAPACKpotri_("L",&B_N,S_data,&B_N,&B_ierr)); 1516 if (B_ierr) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_LIB,"Error in POTRI Lapack routine %d",(int)B_ierr); 1517 } else if (use_sytr) { 1518 PetscStackCallBLAS("LAPACKsytrf",LAPACKsytrf_("L",&B_N,S_data,&B_N,pivots,Bwork,&B_lwork,&B_ierr)); 1519 if (B_ierr) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_LIB,"Error in SYTRF Lapack routine %d",(int)B_ierr); 1520 PetscStackCallBLAS("LAPACKsytri",LAPACKsytri_("L",&B_N,S_data,&B_N,pivots,Bwork,&B_ierr)); 1521 if (B_ierr) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_LIB,"Error in SYTRI Lapack routine %d",(int)B_ierr); 1522 } else { 1523 PetscStackCallBLAS("LAPACKgetrf",LAPACKgetrf_(&B_N,&B_N,S_data,&B_N,pivots,&B_ierr)); 1524 if (B_ierr) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_LIB,"Error in GETRF Lapack routine %d",(int)B_ierr); 1525 PetscStackCallBLAS("LAPACKgetri",LAPACKgetri_(&B_N,S_data,&B_N,pivots,Bwork,&B_lwork,&B_ierr)); 1526 if (B_ierr) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_LIB,"Error in GETRI Lapack routine %d",(int)B_ierr); 1527 } 1528 ierr = PetscLogFlops(1.0*size_schur*size_schur*size_schur);CHKERRQ(ierr); 1529 ierr = PetscFPTrapPop();CHKERRQ(ierr); 1530 ierr = MatDenseRestoreArray(S_all_inv,&S_data);CHKERRQ(ierr); 1531 } 1532 /* S_Ej_tilda_all */ 1533 cum = cum2 = 0; 1534 ierr = MatDenseGetArray(S_all_inv,&S_data);CHKERRQ(ierr); 1535 for (i=0;i<sub_schurs->n_subs;i++) { 1536 PetscInt j; 1537 1538 ierr = ISGetLocalSize(sub_schurs->is_subs[i],&subset_size);CHKERRQ(ierr); 1539 /* get (St^-1)_E */ 1540 /* Unless we are changing the variables, I don't need to expand to upper triangular since St^-1 1541 will be properly accessed later during adaptive selection */ 1542 if (S_lower_triangular) { 1543 PetscInt k; 1544 if (sub_schurs->change) { 1545 for (k=0;k<subset_size;k++) { 1546 for (j=k;j<subset_size;j++) { 1547 work[k*subset_size+j] = S_data[cum2+k*size_schur+j]; 1548 work[j*subset_size+k] = work[k*subset_size+j]; 1549 } 1550 } 1551 } else { 1552 for (k=0;k<subset_size;k++) { 1553 for (j=k;j<subset_size;j++) { 1554 work[k*subset_size+j] = S_data[cum2+k*size_schur+j]; 1555 } 1556 } 1557 } 1558 } else { 1559 PetscInt k; 1560 for (k=0;k<subset_size;k++) { 1561 for (j=0;j<subset_size;j++) { 1562 work[k*subset_size+j] = S_data[cum2+k*size_schur+j]; 1563 } 1564 } 1565 } 1566 if (sub_schurs->change) { 1567 Mat change_sub,SEj,T; 1568 1569 /* change basis */ 1570 ierr = KSPGetOperators(sub_schurs->change[i],&change_sub,NULL);CHKERRQ(ierr); 1571 ierr = MatCreateSeqDense(PETSC_COMM_SELF,subset_size,subset_size,work,&SEj);CHKERRQ(ierr); 1572 if (!sub_schurs->change_with_qr) { /* currently there's no support for PtAP with P SeqAIJ */ 1573 Mat T2; 1574 ierr = MatTransposeMatMult(change_sub,SEj,MAT_INITIAL_MATRIX,1.0,&T2);CHKERRQ(ierr); 1575 ierr = MatMatMult(T2,change_sub,MAT_INITIAL_MATRIX,1.0,&T);CHKERRQ(ierr); 1576 ierr = MatDestroy(&T2);CHKERRQ(ierr); 1577 ierr = MatConvert(T,MATSEQDENSE,MAT_INPLACE_MATRIX,&T);CHKERRQ(ierr); 1578 } else { 1579 ierr = MatPtAP(SEj,change_sub,MAT_INITIAL_MATRIX,1.0,&T);CHKERRQ(ierr); 1580 } 1581 ierr = MatCopy(T,SEj,SAME_NONZERO_PATTERN);CHKERRQ(ierr); 1582 ierr = MatDestroy(&T);CHKERRQ(ierr); 1583 /* set diagonal entry to a very large value to pick the basis we are eliminating as the first eigenvectors with adaptive selection */ 1584 ierr = MatZeroRowsColumnsIS(SEj,sub_schurs->change_primal_sub[i],1./PETSC_SMALL,NULL,NULL);CHKERRQ(ierr); 1585 ierr = MatDestroy(&SEj);CHKERRQ(ierr); 1586 } 1587 for (j=0;j<subset_size;j++) dummy_idx[j] = cum+j; 1588 ierr = MatSetValues(sub_schurs->sum_S_Ej_tilda_all,subset_size,dummy_idx,subset_size,dummy_idx,work,INSERT_VALUES);CHKERRQ(ierr); 1589 cum += subset_size; 1590 cum2 += subset_size*(size_schur + 1); 1591 } 1592 ierr = MatDenseRestoreArray(S_all_inv,&S_data);CHKERRQ(ierr); 1593 if (solver_S) { 1594 if (schur_has_vertices) { 1595 ierr = MatFactorRestoreSchurComplement(F,&S_all_inv,MAT_FACTOR_SCHUR_FACTORED);CHKERRQ(ierr); 1596 } else { 1597 ierr = MatFactorRestoreSchurComplement(F,&S_all_inv,MAT_FACTOR_SCHUR_INVERTED);CHKERRQ(ierr); 1598 } 1599 } 1600 ierr = MatDestroy(&S_all_inv);CHKERRQ(ierr); 1601 } 1602 1603 /* move back factors if needed */ 1604 if (schur_has_vertices) { 1605 Mat S_tmp; 1606 PetscInt nd = 0; 1607 1608 if (!solver_S) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"This should not happen"); 1609 ierr = MatFactorGetSchurComplement(F,&S_tmp,NULL);CHKERRQ(ierr); 1610 if (use_potr) { 1611 PetscScalar *data; 1612 1613 ierr = MatDenseGetArray(S_tmp,&data);CHKERRQ(ierr); 1614 ierr = PetscMemzero(data,size_schur*size_schur*sizeof(PetscScalar));CHKERRQ(ierr); 1615 1616 if (S_lower_triangular) { 1617 cum = 0; 1618 for (i=0;i<size_active_schur;i++) { 1619 ierr = PetscMemcpy(data+i*(size_schur+1),schur_factor+cum,(size_active_schur-i)*sizeof(PetscScalar));CHKERRQ(ierr); 1620 cum += size_active_schur-i; 1621 } 1622 } else { 1623 ierr = PetscMemcpy(data,schur_factor,size_schur*size_schur*sizeof(PetscScalar));CHKERRQ(ierr); 1624 } 1625 if (sub_schurs->is_dir) { 1626 ierr = ISGetLocalSize(sub_schurs->is_dir,&nd);CHKERRQ(ierr); 1627 for (i=0;i<nd;i++) { 1628 data[(i+size_active_schur)*(size_schur+1)] = schur_factor[cum+i]; 1629 } 1630 } 1631 /* workaround: since I cannot modify the matrices used inside the solvers for the forward and backward substitutions, 1632 set the diagonal entry of the Schur factor to a very large value */ 1633 for (i=size_active_schur+nd;i<size_schur;i++) { 1634 data[i*(size_schur+1)] = infty; 1635 } 1636 ierr = MatDenseRestoreArray(S_tmp,&data);CHKERRQ(ierr); 1637 } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Factor update not yet implemented for non SPD matrices"); 1638 ierr = MatFactorRestoreSchurComplement(F,&S_tmp,MAT_FACTOR_SCHUR_FACTORED);CHKERRQ(ierr); 1639 } 1640 } else if (factor_workaround) { /* we need to eliminate any unneeded coupling */ 1641 PetscScalar *data; 1642 PetscInt nd = 0; 1643 1644 if (sub_schurs->is_dir) { /* dirichlet dofs could have different scalings */ 1645 ierr = ISGetLocalSize(sub_schurs->is_dir,&nd);CHKERRQ(ierr); 1646 } 1647 ierr = MatFactorGetSchurComplement(F,&S_all,NULL);CHKERRQ(ierr); 1648 ierr = MatDenseGetArray(S_all,&data);CHKERRQ(ierr); 1649 for (i=0;i<size_active_schur;i++) { 1650 ierr = PetscMemzero(data+i*size_schur+size_active_schur,(size_schur-size_active_schur)*sizeof(PetscScalar));CHKERRQ(ierr); 1651 } 1652 for (i=size_active_schur+nd;i<size_schur;i++) { 1653 ierr = PetscMemzero(data+i*size_schur+size_active_schur,(size_schur-size_active_schur)*sizeof(PetscScalar));CHKERRQ(ierr); 1654 data[i*(size_schur+1)] = infty; 1655 } 1656 ierr = MatDenseRestoreArray(S_all,&data);CHKERRQ(ierr); 1657 ierr = MatFactorRestoreSchurComplement(F,&S_all,MAT_FACTOR_SCHUR_UNFACTORED);CHKERRQ(ierr); 1658 } 1659 ierr = PetscFree2(dummy_idx,work);CHKERRQ(ierr); 1660 ierr = PetscFree(schur_factor);CHKERRQ(ierr); 1661 ierr = VecDestroy(&Dall);CHKERRQ(ierr); 1662 } 1663 ierr = PetscFree(nnz);CHKERRQ(ierr); 1664 ierr = MatDestroy(&F);CHKERRQ(ierr); 1665 ierr = ISDestroy(&is_I_layer);CHKERRQ(ierr); 1666 ierr = MatDestroy(&S_all);CHKERRQ(ierr); 1667 ierr = MatDestroy(&A_BB);CHKERRQ(ierr); 1668 ierr = MatDestroy(&A_IB);CHKERRQ(ierr); 1669 ierr = MatDestroy(&A_BI);CHKERRQ(ierr); 1670 1671 /* speed up matrix assembly */ 1672 ierr = PetscMalloc1(sub_schurs->n_subs,&nnz);CHKERRQ(ierr); 1673 for (i=0;i<sub_schurs->n_subs;i++) { 1674 ierr = ISGetLocalSize(sub_schurs->is_subs[i],&nnz[i]);CHKERRQ(ierr); 1675 } 1676 ierr = ISCreateGeneral(PETSC_COMM_SELF,sub_schurs->n_subs,nnz,PETSC_OWN_POINTER,&is_I_layer);CHKERRQ(ierr); 1677 ierr = MatSetVariableBlockSizes(sub_schurs->S_Ej_all,sub_schurs->n_subs,nnz);CHKERRQ(ierr); 1678 ierr = MatAssemblyBegin(sub_schurs->S_Ej_all,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 1679 ierr = MatAssemblyEnd(sub_schurs->S_Ej_all,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 1680 if (compute_Stilda) { 1681 ierr = MatSetVariableBlockSizes(sub_schurs->sum_S_Ej_tilda_all,sub_schurs->n_subs,nnz);CHKERRQ(ierr); 1682 ierr = MatAssemblyBegin(sub_schurs->sum_S_Ej_tilda_all,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 1683 ierr = MatAssemblyEnd(sub_schurs->sum_S_Ej_tilda_all,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 1684 if (deluxe) { 1685 ierr = MatSetVariableBlockSizes(sub_schurs->sum_S_Ej_inv_all,sub_schurs->n_subs,nnz);CHKERRQ(ierr); 1686 ierr = MatAssemblyBegin(sub_schurs->sum_S_Ej_inv_all,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 1687 ierr = MatAssemblyEnd(sub_schurs->sum_S_Ej_inv_all,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 1688 } 1689 } 1690 ierr = ISDestroy(&is_I_layer);CHKERRQ(ierr); 1691 1692 /* Global matrix of all assembled Schur on subsets */ 1693 ierr = MatISSetLocalMat(work_mat,sub_schurs->S_Ej_all);CHKERRQ(ierr); 1694 ierr = MatAssemblyBegin(work_mat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 1695 ierr = MatAssemblyEnd(work_mat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 1696 ierr = MatISSetMPIXAIJPreallocation_Private(work_mat,global_schur_subsets,PETSC_TRUE);CHKERRQ(ierr); 1697 ierr = MatConvert(work_mat,MATAIJ,MAT_REUSE_MATRIX,&global_schur_subsets);CHKERRQ(ierr); 1698 1699 /* Get local part of (\sum_j S_Ej) */ 1700 ierr = MatCreateSubMatrices(global_schur_subsets,1,&all_subsets_n,&all_subsets_n,MAT_INITIAL_MATRIX,&submats);CHKERRQ(ierr); 1701 if (!sub_schurs->sum_S_Ej_all) { 1702 ierr = MatDuplicate(submats[0],MAT_COPY_VALUES,&sub_schurs->sum_S_Ej_all);CHKERRQ(ierr); 1703 } else { 1704 ierr = MatCopy(submats[0],sub_schurs->sum_S_Ej_all,SAME_NONZERO_PATTERN);CHKERRQ(ierr); 1705 } 1706 1707 /* Get local part of (\sum_j S^-1_Ej) (\sum_j St^-1_Ej) */ 1708 if (compute_Stilda) { 1709 ierr = MatISSetLocalMat(work_mat,sub_schurs->sum_S_Ej_tilda_all);CHKERRQ(ierr); 1710 ierr = MatConvert(work_mat,MATAIJ,MAT_REUSE_MATRIX,&global_schur_subsets);CHKERRQ(ierr); 1711 ierr = MatCreateSubMatrices(global_schur_subsets,1,&all_subsets_n,&all_subsets_n,MAT_REUSE_MATRIX,&submats);CHKERRQ(ierr); 1712 ierr = MatCopy(submats[0],sub_schurs->sum_S_Ej_tilda_all,SAME_NONZERO_PATTERN);CHKERRQ(ierr); 1713 if (deluxe) { 1714 ierr = MatISSetLocalMat(work_mat,sub_schurs->sum_S_Ej_inv_all);CHKERRQ(ierr); 1715 ierr = MatConvert(work_mat,MATAIJ,MAT_REUSE_MATRIX,&global_schur_subsets);CHKERRQ(ierr); 1716 ierr = MatCreateSubMatrices(global_schur_subsets,1,&all_subsets_n,&all_subsets_n,MAT_REUSE_MATRIX,&submats);CHKERRQ(ierr); 1717 ierr = MatCopy(submats[0],sub_schurs->sum_S_Ej_inv_all,SAME_NONZERO_PATTERN);CHKERRQ(ierr); 1718 } else { 1719 PetscScalar *array; 1720 PetscInt cum; 1721 1722 ierr = MatSeqAIJGetArray(sub_schurs->sum_S_Ej_tilda_all,&array);CHKERRQ(ierr); 1723 cum = 0; 1724 for (i=0;i<sub_schurs->n_subs;i++) { 1725 ierr = ISGetLocalSize(sub_schurs->is_subs[i],&subset_size);CHKERRQ(ierr); 1726 ierr = PetscBLASIntCast(subset_size,&B_N);CHKERRQ(ierr); 1727 ierr = PetscFPTrapPush(PETSC_FP_TRAP_OFF);CHKERRQ(ierr); 1728 if (use_potr) { 1729 PetscStackCallBLAS("LAPACKpotrf",LAPACKpotrf_("L",&B_N,array+cum,&B_N,&B_ierr)); 1730 if (B_ierr) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_LIB,"Error in POTRF Lapack routine %d",(int)B_ierr); 1731 PetscStackCallBLAS("LAPACKpotri",LAPACKpotri_("L",&B_N,array+cum,&B_N,&B_ierr)); 1732 if (B_ierr) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_LIB,"Error in POTRI Lapack routine %d",(int)B_ierr); 1733 } else if (use_sytr) { 1734 PetscStackCallBLAS("LAPACKsytrf",LAPACKsytrf_("L",&B_N,array+cum,&B_N,pivots,Bwork,&B_lwork,&B_ierr)); 1735 if (B_ierr) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_LIB,"Error in SYTRF Lapack routine %d",(int)B_ierr); 1736 PetscStackCallBLAS("LAPACKsytri",LAPACKsytri_("L",&B_N,array+cum,&B_N,pivots,Bwork,&B_ierr)); 1737 if (B_ierr) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_LIB,"Error in SYTRI Lapack routine %d",(int)B_ierr); 1738 } else { 1739 PetscStackCallBLAS("LAPACKgetrf",LAPACKgetrf_(&B_N,&B_N,array+cum,&B_N,pivots,&B_ierr)); 1740 if (B_ierr) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_LIB,"Error in GETRF Lapack routine %d",(int)B_ierr); 1741 PetscStackCallBLAS("LAPACKgetri",LAPACKgetri_(&B_N,array+cum,&B_N,pivots,Bwork,&B_lwork,&B_ierr)); 1742 if (B_ierr) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_LIB,"Error in GETRI Lapack routine %d",(int)B_ierr); 1743 } 1744 ierr = PetscLogFlops(1.0*subset_size*subset_size*subset_size);CHKERRQ(ierr); 1745 ierr = PetscFPTrapPop();CHKERRQ(ierr); 1746 cum += subset_size*subset_size; 1747 } 1748 ierr = MatSeqAIJRestoreArray(sub_schurs->sum_S_Ej_tilda_all,&array);CHKERRQ(ierr); 1749 ierr = PetscObjectReference((PetscObject)sub_schurs->sum_S_Ej_all);CHKERRQ(ierr); 1750 ierr = MatDestroy(&sub_schurs->sum_S_Ej_inv_all);CHKERRQ(ierr); 1751 sub_schurs->sum_S_Ej_inv_all = sub_schurs->sum_S_Ej_all; 1752 } 1753 } 1754 ierr = MatDestroySubMatrices(1,&submats);CHKERRQ(ierr); 1755 if (matl_dbg_viewer) { 1756 PetscInt cum; 1757 1758 if (sub_schurs->S_Ej_all) { 1759 ierr = PetscObjectSetName((PetscObject)sub_schurs->S_Ej_all,"SE");CHKERRQ(ierr); 1760 ierr = MatView(sub_schurs->S_Ej_all,matl_dbg_viewer);CHKERRQ(ierr); 1761 } 1762 if (sub_schurs->sum_S_Ej_all) { 1763 ierr = PetscObjectSetName((PetscObject)sub_schurs->sum_S_Ej_all,"SSE");CHKERRQ(ierr); 1764 ierr = MatView(sub_schurs->sum_S_Ej_all,matl_dbg_viewer);CHKERRQ(ierr); 1765 } 1766 if (sub_schurs->sum_S_Ej_inv_all) { 1767 ierr = PetscObjectSetName((PetscObject)sub_schurs->sum_S_Ej_inv_all,"SSEm");CHKERRQ(ierr); 1768 ierr = MatView(sub_schurs->sum_S_Ej_inv_all,matl_dbg_viewer);CHKERRQ(ierr); 1769 } 1770 if (sub_schurs->sum_S_Ej_tilda_all) { 1771 ierr = PetscObjectSetName((PetscObject)sub_schurs->sum_S_Ej_tilda_all,"SSEt");CHKERRQ(ierr); 1772 ierr = MatView(sub_schurs->sum_S_Ej_tilda_all,matl_dbg_viewer);CHKERRQ(ierr); 1773 } 1774 for (i=0,cum=0;i<sub_schurs->n_subs;i++) { 1775 IS is; 1776 char name[16]; 1777 1778 ierr = PetscSNPrintf(name,sizeof(name),"IE%D",i);CHKERRQ(ierr); 1779 ierr = ISGetLocalSize(sub_schurs->is_subs[i],&subset_size);CHKERRQ(ierr); 1780 ierr = ISCreateStride(PETSC_COMM_SELF,subset_size,cum,1,&is);CHKERRQ(ierr); 1781 ierr = PetscObjectSetName((PetscObject)is,name);CHKERRQ(ierr); 1782 ierr = ISView(is,matl_dbg_viewer);CHKERRQ(ierr); 1783 ierr = ISDestroy(&is);CHKERRQ(ierr); 1784 cum += subset_size; 1785 } 1786 } 1787 1788 /* free workspace */ 1789 ierr = PetscViewerDestroy(&matl_dbg_viewer);CHKERRQ(ierr); 1790 ierr = PetscFree(submats);CHKERRQ(ierr); 1791 ierr = PetscFree2(Bwork,pivots);CHKERRQ(ierr); 1792 ierr = MatDestroy(&global_schur_subsets);CHKERRQ(ierr); 1793 ierr = MatDestroy(&work_mat);CHKERRQ(ierr); 1794 ierr = ISDestroy(&all_subsets_n);CHKERRQ(ierr); 1795 ierr = PetscCommDestroy(&comm_n);CHKERRQ(ierr); 1796 PetscFunctionReturn(0); 1797 } 1798 1799 PetscErrorCode PCBDDCSubSchursInit(PCBDDCSubSchurs sub_schurs, const char* prefix, IS is_I, IS is_B, PCBDDCGraph graph, ISLocalToGlobalMapping BtoNmap, PetscBool copycc) 1800 { 1801 IS *faces,*edges,*all_cc,vertices; 1802 PetscInt i,n_faces,n_edges,n_all_cc; 1803 PetscBool is_sorted,ispetsc; 1804 PetscErrorCode ierr; 1805 1806 PetscFunctionBegin; 1807 ierr = ISSorted(is_I,&is_sorted);CHKERRQ(ierr); 1808 if (!is_sorted) SETERRQ(PetscObjectComm((PetscObject)is_I),PETSC_ERR_PLIB,"IS for I dofs should be shorted"); 1809 ierr = ISSorted(is_B,&is_sorted);CHKERRQ(ierr); 1810 if (!is_sorted) SETERRQ(PetscObjectComm((PetscObject)is_B),PETSC_ERR_PLIB,"IS for B dofs should be shorted"); 1811 1812 /* reset any previous data */ 1813 ierr = PCBDDCSubSchursReset(sub_schurs);CHKERRQ(ierr); 1814 1815 /* get index sets for faces and edges (already sorted by global ordering) */ 1816 ierr = PCBDDCGraphGetCandidatesIS(graph,&n_faces,&faces,&n_edges,&edges,&vertices);CHKERRQ(ierr); 1817 n_all_cc = n_faces+n_edges; 1818 ierr = PetscBTCreate(n_all_cc,&sub_schurs->is_edge);CHKERRQ(ierr); 1819 ierr = PetscMalloc1(n_all_cc,&all_cc);CHKERRQ(ierr); 1820 for (i=0;i<n_faces;i++) { 1821 if (copycc) { 1822 ierr = ISDuplicate(faces[i],&all_cc[i]);CHKERRQ(ierr); 1823 } else { 1824 ierr = PetscObjectReference((PetscObject)faces[i]);CHKERRQ(ierr); 1825 all_cc[i] = faces[i]; 1826 } 1827 } 1828 for (i=0;i<n_edges;i++) { 1829 if (copycc) { 1830 ierr = ISDuplicate(edges[i],&all_cc[n_faces+i]);CHKERRQ(ierr); 1831 } else { 1832 ierr = PetscObjectReference((PetscObject)edges[i]);CHKERRQ(ierr); 1833 all_cc[n_faces+i] = edges[i]; 1834 } 1835 ierr = PetscBTSet(sub_schurs->is_edge,n_faces+i);CHKERRQ(ierr); 1836 } 1837 ierr = PetscObjectReference((PetscObject)vertices);CHKERRQ(ierr); 1838 sub_schurs->is_vertices = vertices; 1839 ierr = PCBDDCGraphRestoreCandidatesIS(graph,&n_faces,&faces,&n_edges,&edges,&vertices);CHKERRQ(ierr); 1840 sub_schurs->is_dir = NULL; 1841 ierr = PCBDDCGraphGetDirichletDofsB(graph,&sub_schurs->is_dir);CHKERRQ(ierr); 1842 1843 /* Determine if MatFactor can be used */ 1844 ierr = PetscStrallocpy(prefix,&sub_schurs->prefix);CHKERRQ(ierr); 1845 #if defined(PETSC_HAVE_MUMPS) 1846 ierr = PetscStrncpy(sub_schurs->mat_solver_type,MATSOLVERMUMPS,64);CHKERRQ(ierr); 1847 #elif defined(PETSC_HAVE_MKL_PARDISO) 1848 ierr = PetscStrncpy(sub_schurs->mat_solver_type,MATSOLVERMKL_PARDISO,64);CHKERRQ(ierr); 1849 #else 1850 ierr = PetscStrncpy(sub_schurs->mat_solver_type,MATSOLVERPETSC,64);CHKERRQ(ierr); 1851 #endif 1852 #if defined(PETSC_USE_COMPLEX) 1853 sub_schurs->is_hermitian = PETSC_FALSE; /* Hermitian Cholesky is not supported by PETSc and external packages */ 1854 #else 1855 sub_schurs->is_hermitian = PETSC_TRUE; 1856 #endif 1857 sub_schurs->is_posdef = PETSC_TRUE; 1858 sub_schurs->is_symmetric = PETSC_TRUE; 1859 sub_schurs->debug = PETSC_FALSE; 1860 sub_schurs->restrict_comm = PETSC_FALSE; 1861 ierr = PetscOptionsBegin(PetscObjectComm((PetscObject)graph->l2gmap),sub_schurs->prefix,"BDDC sub_schurs options","PC");CHKERRQ(ierr); 1862 ierr = PetscOptionsString("-sub_schurs_mat_solver_type","Specific direct solver to use",NULL,sub_schurs->mat_solver_type,sub_schurs->mat_solver_type,64,NULL);CHKERRQ(ierr); 1863 ierr = PetscOptionsBool("-sub_schurs_symmetric","Symmetric problem",NULL,sub_schurs->is_symmetric,&sub_schurs->is_symmetric,NULL);CHKERRQ(ierr); 1864 ierr = PetscOptionsBool("-sub_schurs_hermitian","Hermitian problem",NULL,sub_schurs->is_hermitian,&sub_schurs->is_hermitian,NULL);CHKERRQ(ierr); 1865 ierr = PetscOptionsBool("-sub_schurs_posdef","Positive definite problem",NULL,sub_schurs->is_posdef,&sub_schurs->is_posdef,NULL);CHKERRQ(ierr); 1866 ierr = PetscOptionsBool("-sub_schurs_restrictcomm","Restrict communicator on active processes only",NULL,sub_schurs->restrict_comm,&sub_schurs->restrict_comm,NULL);CHKERRQ(ierr); 1867 ierr = PetscOptionsBool("-sub_schurs_debug","Debug output",NULL,sub_schurs->debug,&sub_schurs->debug,NULL);CHKERRQ(ierr); 1868 ierr = PetscOptionsEnd();CHKERRQ(ierr); 1869 ierr = PetscStrcmp(sub_schurs->mat_solver_type,MATSOLVERPETSC,&ispetsc);CHKERRQ(ierr); 1870 sub_schurs->schur_explicit = (PetscBool)!ispetsc; 1871 1872 /* for reals, symmetric and hermitian are synonims */ 1873 #if !defined(PETSC_USE_COMPLEX) 1874 sub_schurs->is_symmetric = (PetscBool)(sub_schurs->is_symmetric && sub_schurs->is_hermitian); 1875 sub_schurs->is_hermitian = sub_schurs->is_symmetric; 1876 #endif 1877 1878 ierr = PetscObjectReference((PetscObject)is_I);CHKERRQ(ierr); 1879 sub_schurs->is_I = is_I; 1880 ierr = PetscObjectReference((PetscObject)is_B);CHKERRQ(ierr); 1881 sub_schurs->is_B = is_B; 1882 ierr = PetscObjectReference((PetscObject)graph->l2gmap);CHKERRQ(ierr); 1883 sub_schurs->l2gmap = graph->l2gmap; 1884 ierr = PetscObjectReference((PetscObject)BtoNmap);CHKERRQ(ierr); 1885 sub_schurs->BtoNmap = BtoNmap; 1886 sub_schurs->n_subs = n_all_cc; 1887 sub_schurs->is_subs = all_cc; 1888 sub_schurs->S_Ej_all = NULL; 1889 sub_schurs->sum_S_Ej_all = NULL; 1890 sub_schurs->sum_S_Ej_inv_all = NULL; 1891 sub_schurs->sum_S_Ej_tilda_all = NULL; 1892 sub_schurs->is_Ej_all = NULL; 1893 PetscFunctionReturn(0); 1894 } 1895 1896 PetscErrorCode PCBDDCSubSchursCreate(PCBDDCSubSchurs *sub_schurs) 1897 { 1898 PCBDDCSubSchurs schurs_ctx; 1899 PetscErrorCode ierr; 1900 1901 PetscFunctionBegin; 1902 ierr = PetscNew(&schurs_ctx);CHKERRQ(ierr); 1903 schurs_ctx->n_subs = 0; 1904 *sub_schurs = schurs_ctx; 1905 PetscFunctionReturn(0); 1906 } 1907 1908 PetscErrorCode PCBDDCSubSchursReset(PCBDDCSubSchurs sub_schurs) 1909 { 1910 PetscInt i; 1911 PetscErrorCode ierr; 1912 1913 PetscFunctionBegin; 1914 if (!sub_schurs) PetscFunctionReturn(0); 1915 ierr = PetscFree(sub_schurs->prefix);CHKERRQ(ierr); 1916 ierr = MatDestroy(&sub_schurs->A);CHKERRQ(ierr); 1917 ierr = MatDestroy(&sub_schurs->S);CHKERRQ(ierr); 1918 ierr = ISDestroy(&sub_schurs->is_I);CHKERRQ(ierr); 1919 ierr = ISDestroy(&sub_schurs->is_B);CHKERRQ(ierr); 1920 ierr = ISLocalToGlobalMappingDestroy(&sub_schurs->l2gmap);CHKERRQ(ierr); 1921 ierr = ISLocalToGlobalMappingDestroy(&sub_schurs->BtoNmap);CHKERRQ(ierr); 1922 ierr = MatDestroy(&sub_schurs->S_Ej_all);CHKERRQ(ierr); 1923 ierr = MatDestroy(&sub_schurs->sum_S_Ej_all);CHKERRQ(ierr); 1924 ierr = MatDestroy(&sub_schurs->sum_S_Ej_inv_all);CHKERRQ(ierr); 1925 ierr = MatDestroy(&sub_schurs->sum_S_Ej_tilda_all);CHKERRQ(ierr); 1926 ierr = ISDestroy(&sub_schurs->is_Ej_all);CHKERRQ(ierr); 1927 ierr = ISDestroy(&sub_schurs->is_vertices);CHKERRQ(ierr); 1928 ierr = ISDestroy(&sub_schurs->is_dir);CHKERRQ(ierr); 1929 ierr = PetscBTDestroy(&sub_schurs->is_edge);CHKERRQ(ierr); 1930 for (i=0;i<sub_schurs->n_subs;i++) { 1931 ierr = ISDestroy(&sub_schurs->is_subs[i]);CHKERRQ(ierr); 1932 } 1933 if (sub_schurs->n_subs) { 1934 ierr = PetscFree(sub_schurs->is_subs);CHKERRQ(ierr); 1935 } 1936 if (sub_schurs->reuse_solver) { 1937 ierr = PCBDDCReuseSolversReset(sub_schurs->reuse_solver);CHKERRQ(ierr); 1938 } 1939 ierr = PetscFree(sub_schurs->reuse_solver);CHKERRQ(ierr); 1940 if (sub_schurs->change) { 1941 for (i=0;i<sub_schurs->n_subs;i++) { 1942 ierr = KSPDestroy(&sub_schurs->change[i]);CHKERRQ(ierr); 1943 ierr = ISDestroy(&sub_schurs->change_primal_sub[i]);CHKERRQ(ierr); 1944 } 1945 } 1946 ierr = PetscFree(sub_schurs->change);CHKERRQ(ierr); 1947 ierr = PetscFree(sub_schurs->change_primal_sub);CHKERRQ(ierr); 1948 sub_schurs->n_subs = 0; 1949 PetscFunctionReturn(0); 1950 } 1951 1952 PetscErrorCode PCBDDCSubSchursDestroy(PCBDDCSubSchurs* sub_schurs) 1953 { 1954 PetscErrorCode ierr; 1955 1956 PetscFunctionBegin; 1957 ierr = PCBDDCSubSchursReset(*sub_schurs);CHKERRQ(ierr); 1958 ierr = PetscFree(*sub_schurs);CHKERRQ(ierr); 1959 PetscFunctionReturn(0); 1960 } 1961 1962 PETSC_STATIC_INLINE PetscErrorCode PCBDDCAdjGetNextLayer_Private(PetscInt* queue_tip,PetscInt n_prev,PetscBT touched,PetscInt* xadj,PetscInt* adjncy,PetscInt* n_added) 1963 { 1964 PetscInt i,j,n; 1965 PetscErrorCode ierr; 1966 1967 PetscFunctionBegin; 1968 n = 0; 1969 for (i=-n_prev;i<0;i++) { 1970 PetscInt start_dof = queue_tip[i]; 1971 for (j=xadj[start_dof];j<xadj[start_dof+1];j++) { 1972 PetscInt dof = adjncy[j]; 1973 if (!PetscBTLookup(touched,dof)) { 1974 ierr = PetscBTSet(touched,dof);CHKERRQ(ierr); 1975 queue_tip[n] = dof; 1976 n++; 1977 } 1978 } 1979 } 1980 *n_added = n; 1981 PetscFunctionReturn(0); 1982 } 1983