xref: /petsc/src/ksp/pc/impls/is/pcis.c (revision dcca6d9d80ebd869fe6029bd05a3aa9faafef49e)
1 
2 #include "../src/ksp/pc/impls/is/pcis.h" /*I "petscpc.h" I*/
3 
4 #undef __FUNCT__
5 #define __FUNCT__ "PCISSetUseStiffnessScaling_IS"
6 static PetscErrorCode PCISSetUseStiffnessScaling_IS(PC pc, PetscBool use)
7 {
8   PC_IS *pcis = (PC_IS*)pc->data;
9 
10   PetscFunctionBegin;
11   pcis->use_stiffness_scaling = use;
12   PetscFunctionReturn(0);
13 }
14 
15 #undef __FUNCT__
16 #define __FUNCT__ "PCISSetUseStiffnessScaling"
17 /*@
18  PCISSetUseStiffnessScaling - Tells PCIS to construct partition of unity using
19                               local matrices' diagonal.
20 
21    Not collective
22 
23    Input Parameters:
24 +  pc - the preconditioning context
25 -  use - whether or not pcis use matrix diagonal to build partition of unity.
26 
27    Level: intermediate
28 
29    Notes:
30 
31 .seealso: PCBDDC
32 @*/
33 PetscErrorCode PCISSetUseStiffnessScaling(PC pc, PetscBool use)
34 {
35   PetscErrorCode ierr;
36 
37   PetscFunctionBegin;
38   PetscValidHeaderSpecific(pc,PC_CLASSID,1);
39   ierr = PetscTryMethod(pc,"PCISSetUseStiffnessScaling_C",(PC,PetscBool),(pc,use));CHKERRQ(ierr);
40   PetscFunctionReturn(0);
41 }
42 
43 #undef __FUNCT__
44 #define __FUNCT__ "PCISSetSubdomainDiagonalScaling_IS"
45 static PetscErrorCode PCISSetSubdomainDiagonalScaling_IS(PC pc, Vec scaling_factors)
46 {
47   PetscErrorCode ierr;
48   PC_IS          *pcis = (PC_IS*)pc->data;
49 
50   PetscFunctionBegin;
51   ierr    = VecDestroy(&pcis->D);CHKERRQ(ierr);
52   ierr    = PetscObjectReference((PetscObject)scaling_factors);CHKERRQ(ierr);
53   pcis->D = scaling_factors;
54   PetscFunctionReturn(0);
55 }
56 
57 #undef __FUNCT__
58 #define __FUNCT__ "PCISSetSubdomainDiagonalScaling"
59 /*@
60  PCISSetSubdomainDiagonalScaling - Set diagonal scaling for PCIS.
61 
62    Not collective
63 
64    Input Parameters:
65 +  pc - the preconditioning context
66 -  scaling_factors - scaling factors for the subdomain
67 
68    Level: intermediate
69 
70    Notes:
71    Intended to use with jumping coefficients cases.
72 
73 .seealso: PCBDDC
74 @*/
75 PetscErrorCode PCISSetSubdomainDiagonalScaling(PC pc, Vec scaling_factors)
76 {
77   PetscErrorCode ierr;
78 
79   PetscFunctionBegin;
80   PetscValidHeaderSpecific(pc,PC_CLASSID,1);
81   ierr = PetscTryMethod(pc,"PCISSetSubdomainDiagonalScaling_C",(PC,Vec),(pc,scaling_factors));CHKERRQ(ierr);
82   PetscFunctionReturn(0);
83 }
84 
85 #undef __FUNCT__
86 #define __FUNCT__ "PCISSetSubdomainScalingFactor_IS"
87 static PetscErrorCode PCISSetSubdomainScalingFactor_IS(PC pc, PetscScalar scal)
88 {
89   PC_IS *pcis = (PC_IS*)pc->data;
90 
91   PetscFunctionBegin;
92   pcis->scaling_factor = scal;
93   PetscFunctionReturn(0);
94 }
95 
96 #undef __FUNCT__
97 #define __FUNCT__ "PCISSetSubdomainScalingFactor"
98 /*@
99  PCISSetSubdomainScalingFactor - Set scaling factor for PCIS.
100 
101    Not collective
102 
103    Input Parameters:
104 +  pc - the preconditioning context
105 -  scal - scaling factor for the subdomain
106 
107    Level: intermediate
108 
109    Notes:
110    Intended to use with jumping coefficients cases.
111 
112 .seealso: PCBDDC
113 @*/
114 PetscErrorCode PCISSetSubdomainScalingFactor(PC pc, PetscScalar scal)
115 {
116   PetscErrorCode ierr;
117 
118   PetscFunctionBegin;
119   PetscValidHeaderSpecific(pc,PC_CLASSID,1);
120   ierr = PetscTryMethod(pc,"PCISSetSubdomainScalingFactor_C",(PC,PetscScalar),(pc,scal));CHKERRQ(ierr);
121   PetscFunctionReturn(0);
122 }
123 
124 
125 /* -------------------------------------------------------------------------- */
126 /*
127    PCISSetUp -
128 */
129 #undef __FUNCT__
130 #define __FUNCT__ "PCISSetUp"
131 PetscErrorCode  PCISSetUp(PC pc)
132 {
133   PC_IS          *pcis  = (PC_IS*)(pc->data);
134   Mat_IS         *matis;
135   PetscErrorCode ierr;
136   PetscBool      flg,issbaij;
137   Vec            counter;
138 
139   PetscFunctionBegin;
140   ierr = PetscObjectTypeCompare((PetscObject)pc->pmat,MATIS,&flg);CHKERRQ(ierr);
141   if (!flg) SETERRQ(PetscObjectComm((PetscObject)pc),PETSC_ERR_ARG_WRONG,"Preconditioner type of Neumann Neumman requires matrix of type MATIS");
142   matis = (Mat_IS*)pc->pmat->data;
143 
144   pcis->pure_neumann = matis->pure_neumann;
145 
146   /* get info on mapping */
147   ierr = ISLocalToGlobalMappingGetSize(matis->mapping,&pcis->n);CHKERRQ(ierr);
148   ierr = ISLocalToGlobalMappingGetInfo(matis->mapping,&(pcis->n_neigh),&(pcis->neigh),&(pcis->n_shared),&(pcis->shared));CHKERRQ(ierr);
149   pcis->ISLocalToGlobalMappingGetInfoWasCalled = PETSC_TRUE;
150 
151   /* Creating local and global index sets for interior and inteface nodes. */
152   {
153     PetscInt    n_I;
154     PetscInt    *idx_I_local,*idx_B_local,*idx_I_global,*idx_B_global;
155     PetscInt    *array;
156     PetscInt    i,j;
157 
158     /* Identifying interior and interface nodes, in local numbering */
159     ierr = PetscMalloc(pcis->n*sizeof(PetscInt),&array);CHKERRQ(ierr);
160     ierr = PetscMemzero(array,pcis->n*sizeof(PetscInt));CHKERRQ(ierr);
161     for (i=0;i<pcis->n_neigh;i++)
162       for (j=0;j<pcis->n_shared[i];j++)
163           array[pcis->shared[i][j]] += 1;
164 
165     ierr = PetscMalloc(pcis->n*sizeof(PetscInt),&idx_I_local);CHKERRQ(ierr);
166     ierr = PetscMalloc(pcis->n*sizeof(PetscInt),&idx_B_local);CHKERRQ(ierr);
167     for (i=0, pcis->n_B=0, n_I=0; i<pcis->n; i++) {
168       if (!array[i]) {
169         idx_I_local[n_I] = i;
170         n_I++;
171       } else {
172         idx_B_local[pcis->n_B] = i;
173         pcis->n_B++;
174       }
175     }
176     /* Getting the global numbering */
177     idx_B_global = idx_I_local + n_I; /* Just avoiding allocating extra memory, since we have vacant space */
178     idx_I_global = idx_B_local + pcis->n_B;
179     ierr         = ISLocalToGlobalMappingApply(matis->mapping,pcis->n_B,idx_B_local,idx_B_global);CHKERRQ(ierr);
180     ierr         = ISLocalToGlobalMappingApply(matis->mapping,n_I,      idx_I_local,idx_I_global);CHKERRQ(ierr);
181 
182     /* Creating the index sets. */
183     ierr = ISCreateGeneral(PETSC_COMM_SELF,pcis->n_B,idx_B_local,PETSC_COPY_VALUES, &pcis->is_B_local);CHKERRQ(ierr);
184     ierr = ISCreateGeneral(PETSC_COMM_SELF,pcis->n_B,idx_B_global,PETSC_COPY_VALUES,&pcis->is_B_global);CHKERRQ(ierr);
185     ierr = ISCreateGeneral(PETSC_COMM_SELF,n_I,idx_I_local,PETSC_COPY_VALUES, &pcis->is_I_local);CHKERRQ(ierr);
186     ierr = ISCreateGeneral(PETSC_COMM_SELF,n_I,idx_I_global,PETSC_COPY_VALUES,&pcis->is_I_global);CHKERRQ(ierr);
187 
188     /* Freeing memory and restoring arrays */
189     ierr = PetscFree(idx_B_local);CHKERRQ(ierr);
190     ierr = PetscFree(idx_I_local);CHKERRQ(ierr);
191     ierr = PetscFree(array);CHKERRQ(ierr);
192   }
193 
194   /*
195     Extracting the blocks A_II, A_BI, A_IB and A_BB from A. If the numbering
196     is such that interior nodes come first than the interface ones, we have
197 
198     [           |      ]
199     [    A_II   | A_IB ]
200     A = [           |      ]
201     [-----------+------]
202     [    A_BI   | A_BB ]
203   */
204 
205   ierr = MatGetSubMatrix(matis->A,pcis->is_I_local,pcis->is_I_local,MAT_INITIAL_MATRIX,&pcis->A_II);CHKERRQ(ierr);
206   ierr = MatGetSubMatrix(matis->A,pcis->is_B_local,pcis->is_B_local,MAT_INITIAL_MATRIX,&pcis->A_BB);CHKERRQ(ierr);
207   ierr = PetscObjectTypeCompare((PetscObject)matis->A,MATSEQSBAIJ,&issbaij);CHKERRQ(ierr);
208   if (!issbaij) {
209     ierr = MatGetSubMatrix(matis->A,pcis->is_I_local,pcis->is_B_local,MAT_INITIAL_MATRIX,&pcis->A_IB);CHKERRQ(ierr);
210     ierr = MatGetSubMatrix(matis->A,pcis->is_B_local,pcis->is_I_local,MAT_INITIAL_MATRIX,&pcis->A_BI);CHKERRQ(ierr);
211   } else {
212     Mat newmat;
213     ierr = MatConvert(matis->A,MATSEQBAIJ,MAT_INITIAL_MATRIX,&newmat);CHKERRQ(ierr);
214     ierr = MatGetSubMatrix(newmat,pcis->is_I_local,pcis->is_B_local,MAT_INITIAL_MATRIX,&pcis->A_IB);CHKERRQ(ierr);
215     ierr = MatGetSubMatrix(newmat,pcis->is_B_local,pcis->is_I_local,MAT_INITIAL_MATRIX,&pcis->A_BI);CHKERRQ(ierr);
216     ierr = MatDestroy(&newmat);CHKERRQ(ierr);
217   }
218   /*
219     Creating work vectors and arrays
220   */
221   ierr = VecDuplicate(matis->x,&pcis->vec1_N);CHKERRQ(ierr);
222   ierr = VecDuplicate(pcis->vec1_N,&pcis->vec2_N);CHKERRQ(ierr);
223   ierr = VecCreateSeq(PETSC_COMM_SELF,pcis->n-pcis->n_B,&pcis->vec1_D);CHKERRQ(ierr);
224   ierr = VecDuplicate(pcis->vec1_D,&pcis->vec2_D);CHKERRQ(ierr);
225   ierr = VecDuplicate(pcis->vec1_D,&pcis->vec3_D);CHKERRQ(ierr);
226   ierr = VecCreateSeq(PETSC_COMM_SELF,pcis->n_B,&pcis->vec1_B);CHKERRQ(ierr);
227   ierr = VecDuplicate(pcis->vec1_B,&pcis->vec2_B);CHKERRQ(ierr);
228   ierr = VecDuplicate(pcis->vec1_B,&pcis->vec3_B);CHKERRQ(ierr);
229   ierr = MatGetVecs(pc->pmat,&pcis->vec1_global,0);CHKERRQ(ierr);
230   ierr = PetscMalloc((pcis->n)*sizeof(PetscScalar),&pcis->work_N);CHKERRQ(ierr);
231 
232   /* Creating the scatter contexts */
233   ierr = VecScatterCreate(pcis->vec1_global,pcis->is_I_global,pcis->vec1_D,(IS)0,&pcis->global_to_D);CHKERRQ(ierr);
234   ierr = VecScatterCreate(pcis->vec1_N,pcis->is_B_local,pcis->vec1_B,(IS)0,&pcis->N_to_B);CHKERRQ(ierr);
235   ierr = VecScatterCreate(pcis->vec1_global,pcis->is_B_global,pcis->vec1_B,(IS)0,&pcis->global_to_B);CHKERRQ(ierr);
236 
237   /* Creating scaling "matrix" D */
238   ierr = PetscOptionsGetBool(((PetscObject)pc)->prefix,"-pc_is_use_stiffness_scaling",&pcis->use_stiffness_scaling,NULL);CHKERRQ(ierr);
239   if (!pcis->D) {
240     ierr = VecDuplicate(pcis->vec1_B,&pcis->D);CHKERRQ(ierr);
241     if (!pcis->use_stiffness_scaling) {
242       ierr = VecSet(pcis->D,pcis->scaling_factor);CHKERRQ(ierr);
243     } else {
244       ierr = MatGetDiagonal(matis->A,pcis->vec1_N);CHKERRQ(ierr);
245       ierr = VecScatterBegin(pcis->N_to_B,pcis->vec1_N,pcis->D,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
246       ierr = VecScatterEnd  (pcis->N_to_B,pcis->vec1_N,pcis->D,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
247     }
248   }
249   ierr = VecCopy(pcis->D,pcis->vec1_B);CHKERRQ(ierr);
250   ierr = MatGetVecs(pc->pmat,&counter,0);CHKERRQ(ierr); /* temporary auxiliar vector */
251   ierr = VecSet(counter,0.0);CHKERRQ(ierr);
252   ierr = VecScatterBegin(pcis->global_to_B,pcis->vec1_B,counter,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
253   ierr = VecScatterEnd  (pcis->global_to_B,pcis->vec1_B,counter,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
254   ierr = VecScatterBegin(pcis->global_to_B,counter,pcis->vec1_B,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
255   ierr = VecScatterEnd  (pcis->global_to_B,counter,pcis->vec1_B,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
256   ierr = VecPointwiseDivide(pcis->D,pcis->D,pcis->vec1_B);CHKERRQ(ierr);
257   ierr = VecDestroy(&counter);CHKERRQ(ierr);
258 
259   /* See historical note 01, at the bottom of this file. */
260 
261   /*
262     Creating the KSP contexts for the local Dirichlet and Neumann problems.
263   */
264   if (pcis->computesolvers) {
265     PC pc_ctx;
266     /* Dirichlet */
267     ierr = KSPCreate(PETSC_COMM_SELF,&pcis->ksp_D);CHKERRQ(ierr);
268     ierr = PetscObjectIncrementTabLevel((PetscObject)pcis->ksp_D,(PetscObject)pc,1);CHKERRQ(ierr);
269     ierr = KSPSetOperators(pcis->ksp_D,pcis->A_II,pcis->A_II,SAME_PRECONDITIONER);CHKERRQ(ierr);
270     ierr = KSPSetOptionsPrefix(pcis->ksp_D,"is_localD_");CHKERRQ(ierr);
271     ierr = KSPGetPC(pcis->ksp_D,&pc_ctx);CHKERRQ(ierr);
272     ierr = PCSetType(pc_ctx,PCLU);CHKERRQ(ierr);
273     ierr = KSPSetType(pcis->ksp_D,KSPPREONLY);CHKERRQ(ierr);
274     ierr = KSPSetFromOptions(pcis->ksp_D);CHKERRQ(ierr);
275     /* the vectors in the following line are dummy arguments, just telling the KSP the vector size. Values are not used */
276     ierr = KSPSetUp(pcis->ksp_D);CHKERRQ(ierr);
277     /* Neumann */
278     ierr = KSPCreate(PETSC_COMM_SELF,&pcis->ksp_N);CHKERRQ(ierr);
279     ierr = PetscObjectIncrementTabLevel((PetscObject)pcis->ksp_N,(PetscObject)pc,1);CHKERRQ(ierr);
280     ierr = KSPSetOperators(pcis->ksp_N,matis->A,matis->A,SAME_PRECONDITIONER);CHKERRQ(ierr);
281     ierr = KSPSetOptionsPrefix(pcis->ksp_N,"is_localN_");CHKERRQ(ierr);
282     ierr = KSPGetPC(pcis->ksp_N,&pc_ctx);CHKERRQ(ierr);
283     ierr = PCSetType(pc_ctx,PCLU);CHKERRQ(ierr);
284     ierr = KSPSetType(pcis->ksp_N,KSPPREONLY);CHKERRQ(ierr);
285     ierr = KSPSetFromOptions(pcis->ksp_N);CHKERRQ(ierr);
286     {
287       PetscBool damp_fixed                    = PETSC_FALSE,
288                 remove_nullspace_fixed        = PETSC_FALSE,
289                 set_damping_factor_floating   = PETSC_FALSE,
290                 not_damp_floating             = PETSC_FALSE,
291                 not_remove_nullspace_floating = PETSC_FALSE;
292       PetscReal fixed_factor,
293                 floating_factor;
294 
295       ierr = PetscOptionsGetReal(((PetscObject)pc_ctx)->prefix,"-pc_is_damp_fixed",&fixed_factor,&damp_fixed);CHKERRQ(ierr);
296       if (!damp_fixed) fixed_factor = 0.0;
297       ierr = PetscOptionsGetBool(((PetscObject)pc_ctx)->prefix,"-pc_is_damp_fixed",&damp_fixed,NULL);CHKERRQ(ierr);
298 
299       ierr = PetscOptionsGetBool(((PetscObject)pc_ctx)->prefix,"-pc_is_remove_nullspace_fixed",&remove_nullspace_fixed,NULL);CHKERRQ(ierr);
300 
301       ierr = PetscOptionsGetReal(((PetscObject)pc_ctx)->prefix,"-pc_is_set_damping_factor_floating",
302                               &floating_factor,&set_damping_factor_floating);CHKERRQ(ierr);
303       if (!set_damping_factor_floating) floating_factor = 0.0;
304       ierr = PetscOptionsGetBool(((PetscObject)pc_ctx)->prefix,"-pc_is_set_damping_factor_floating",&set_damping_factor_floating,NULL);CHKERRQ(ierr);
305       if (!set_damping_factor_floating) floating_factor = 1.e-12;
306 
307       ierr = PetscOptionsGetBool(((PetscObject)pc_ctx)->prefix,"-pc_is_not_damp_floating",&not_damp_floating,NULL);CHKERRQ(ierr);
308 
309       ierr = PetscOptionsGetBool(((PetscObject)pc_ctx)->prefix,"-pc_is_not_remove_nullspace_floating",&not_remove_nullspace_floating,NULL);CHKERRQ(ierr);
310 
311       if (pcis->pure_neumann) {  /* floating subdomain */
312         if (!(not_damp_floating)) {
313           ierr = PCFactorSetShiftType(pc_ctx,MAT_SHIFT_NONZERO);CHKERRQ(ierr);
314           ierr = PCFactorSetShiftAmount(pc_ctx,floating_factor);CHKERRQ(ierr);
315         }
316         if (!(not_remove_nullspace_floating)) {
317           MatNullSpace nullsp;
318           ierr = MatNullSpaceCreate(PETSC_COMM_SELF,PETSC_TRUE,0,NULL,&nullsp);CHKERRQ(ierr);
319           ierr = KSPSetNullSpace(pcis->ksp_N,nullsp);CHKERRQ(ierr);
320           ierr = MatNullSpaceDestroy(&nullsp);CHKERRQ(ierr);
321         }
322       } else {  /* fixed subdomain */
323         if (damp_fixed) {
324           ierr = PCFactorSetShiftType(pc_ctx,MAT_SHIFT_NONZERO);CHKERRQ(ierr);
325           ierr = PCFactorSetShiftAmount(pc_ctx,floating_factor);CHKERRQ(ierr);
326         }
327         if (remove_nullspace_fixed) {
328           MatNullSpace nullsp;
329           ierr = MatNullSpaceCreate(PETSC_COMM_SELF,PETSC_TRUE,0,NULL,&nullsp);CHKERRQ(ierr);
330           ierr = KSPSetNullSpace(pcis->ksp_N,nullsp);CHKERRQ(ierr);
331           ierr = MatNullSpaceDestroy(&nullsp);CHKERRQ(ierr);
332         }
333       }
334     }
335     /* the vectors in the following line are dummy arguments, just telling the KSP the vector size. Values are not used */
336     ierr = KSPSetUp(pcis->ksp_N);CHKERRQ(ierr);
337   }
338 
339   PetscFunctionReturn(0);
340 }
341 
342 /* -------------------------------------------------------------------------- */
343 /*
344    PCISDestroy -
345 */
346 #undef __FUNCT__
347 #define __FUNCT__ "PCISDestroy"
348 PetscErrorCode  PCISDestroy(PC pc)
349 {
350   PC_IS          *pcis = (PC_IS*)(pc->data);
351   PetscErrorCode ierr;
352 
353   PetscFunctionBegin;
354   ierr = ISDestroy(&pcis->is_B_local);CHKERRQ(ierr);
355   ierr = ISDestroy(&pcis->is_I_local);CHKERRQ(ierr);
356   ierr = ISDestroy(&pcis->is_B_global);CHKERRQ(ierr);
357   ierr = ISDestroy(&pcis->is_I_global);CHKERRQ(ierr);
358   ierr = MatDestroy(&pcis->A_II);CHKERRQ(ierr);
359   ierr = MatDestroy(&pcis->A_IB);CHKERRQ(ierr);
360   ierr = MatDestroy(&pcis->A_BI);CHKERRQ(ierr);
361   ierr = MatDestroy(&pcis->A_BB);CHKERRQ(ierr);
362   ierr = VecDestroy(&pcis->D);CHKERRQ(ierr);
363   ierr = KSPDestroy(&pcis->ksp_N);CHKERRQ(ierr);
364   ierr = KSPDestroy(&pcis->ksp_D);CHKERRQ(ierr);
365   ierr = VecDestroy(&pcis->vec1_N);CHKERRQ(ierr);
366   ierr = VecDestroy(&pcis->vec2_N);CHKERRQ(ierr);
367   ierr = VecDestroy(&pcis->vec1_D);CHKERRQ(ierr);
368   ierr = VecDestroy(&pcis->vec2_D);CHKERRQ(ierr);
369   ierr = VecDestroy(&pcis->vec3_D);CHKERRQ(ierr);
370   ierr = VecDestroy(&pcis->vec1_B);CHKERRQ(ierr);
371   ierr = VecDestroy(&pcis->vec2_B);CHKERRQ(ierr);
372   ierr = VecDestroy(&pcis->vec3_B);CHKERRQ(ierr);
373   ierr = VecDestroy(&pcis->vec1_global);CHKERRQ(ierr);
374   ierr = VecScatterDestroy(&pcis->global_to_D);CHKERRQ(ierr);
375   ierr = VecScatterDestroy(&pcis->N_to_B);CHKERRQ(ierr);
376   ierr = VecScatterDestroy(&pcis->global_to_B);CHKERRQ(ierr);
377   ierr = PetscFree(pcis->work_N);CHKERRQ(ierr);
378   if (pcis->ISLocalToGlobalMappingGetInfoWasCalled) {
379     ierr = ISLocalToGlobalMappingRestoreInfo((ISLocalToGlobalMapping)0,&(pcis->n_neigh),&(pcis->neigh),&(pcis->n_shared),&(pcis->shared));CHKERRQ(ierr);
380   }
381   ierr = PetscObjectComposeFunction((PetscObject)pc,"PCISSetUseStiffnessScaling_C",NULL);CHKERRQ(ierr);
382   ierr = PetscObjectComposeFunction((PetscObject)pc,"PCISSetSubdomainScalingFactor_C",NULL);CHKERRQ(ierr);
383   ierr = PetscObjectComposeFunction((PetscObject)pc,"PCISSetSubdomainDiagonalScaling_C",NULL);CHKERRQ(ierr);
384   PetscFunctionReturn(0);
385 }
386 
387 /* -------------------------------------------------------------------------- */
388 /*
389    PCISCreate -
390 */
391 #undef __FUNCT__
392 #define __FUNCT__ "PCISCreate"
393 PetscErrorCode  PCISCreate(PC pc)
394 {
395   PC_IS          *pcis = (PC_IS*)(pc->data);
396   PetscErrorCode ierr;
397 
398   PetscFunctionBegin;
399   pcis->is_B_local  = 0;
400   pcis->is_I_local  = 0;
401   pcis->is_B_global = 0;
402   pcis->is_I_global = 0;
403   pcis->A_II        = 0;
404   pcis->A_IB        = 0;
405   pcis->A_BI        = 0;
406   pcis->A_BB        = 0;
407   pcis->D           = 0;
408   pcis->ksp_N       = 0;
409   pcis->ksp_D       = 0;
410   pcis->vec1_N      = 0;
411   pcis->vec2_N      = 0;
412   pcis->vec1_D      = 0;
413   pcis->vec2_D      = 0;
414   pcis->vec3_D      = 0;
415   pcis->vec1_B      = 0;
416   pcis->vec2_B      = 0;
417   pcis->vec3_B      = 0;
418   pcis->vec1_global = 0;
419   pcis->work_N      = 0;
420   pcis->global_to_D = 0;
421   pcis->N_to_B      = 0;
422   pcis->global_to_B = 0;
423   pcis->computesolvers = PETSC_TRUE;
424 
425   pcis->ISLocalToGlobalMappingGetInfoWasCalled = PETSC_FALSE;
426 
427   pcis->scaling_factor = 1.0;
428   /* composing functions */
429   ierr = PetscObjectComposeFunction((PetscObject)pc,"PCISSetUseStiffnessScaling_C",PCISSetUseStiffnessScaling_IS);CHKERRQ(ierr);
430   ierr = PetscObjectComposeFunction((PetscObject)pc,"PCISSetSubdomainScalingFactor_C",PCISSetSubdomainScalingFactor_IS);CHKERRQ(ierr);
431   ierr = PetscObjectComposeFunction((PetscObject)pc,"PCISSetSubdomainDiagonalScaling_C",PCISSetSubdomainDiagonalScaling_IS);CHKERRQ(ierr);
432   PetscFunctionReturn(0);
433 }
434 
435 /* -------------------------------------------------------------------------- */
436 /*
437    PCISApplySchur -
438 
439    Input parameters:
440 .  pc - preconditioner context
441 .  v - vector to which the Schur complement is to be applied (it is NOT modified inside this function, UNLESS vec2_B is null)
442 
443    Output parameters:
444 .  vec1_B - result of Schur complement applied to chunk
445 .  vec2_B - garbage (used as work space), or null (and v is used as workspace)
446 .  vec1_D - garbage (used as work space)
447 .  vec2_D - garbage (used as work space)
448 
449 */
450 #undef __FUNCT__
451 #define __FUNCT__ "PCISApplySchur"
452 PetscErrorCode  PCISApplySchur(PC pc, Vec v, Vec vec1_B, Vec vec2_B, Vec vec1_D, Vec vec2_D)
453 {
454   PetscErrorCode ierr;
455   PC_IS          *pcis = (PC_IS*)(pc->data);
456 
457   PetscFunctionBegin;
458   if (!vec2_B) vec2_B = v;
459 
460   ierr = MatMult(pcis->A_BB,v,vec1_B);CHKERRQ(ierr);
461   ierr = MatMult(pcis->A_IB,v,vec1_D);CHKERRQ(ierr);
462   ierr = KSPSolve(pcis->ksp_D,vec1_D,vec2_D);CHKERRQ(ierr);
463   ierr = MatMult(pcis->A_BI,vec2_D,vec2_B);CHKERRQ(ierr);
464   ierr = VecAXPY(vec1_B,-1.0,vec2_B);CHKERRQ(ierr);
465   PetscFunctionReturn(0);
466 }
467 
468 /* -------------------------------------------------------------------------- */
469 /*
470    PCISScatterArrayNToVecB - Scatters interface node values from a big array (of all local nodes, interior or interface,
471    including ghosts) into an interface vector, when in SCATTER_FORWARD mode, or vice-versa, when in SCATTER_REVERSE
472    mode.
473 
474    Input parameters:
475 .  pc - preconditioner context
476 .  array_N - [when in SCATTER_FORWARD mode] Array to be scattered into the vector
477 .  v_B - [when in SCATTER_REVERSE mode] Vector to be scattered into the array
478 
479    Output parameter:
480 .  array_N - [when in SCATTER_REVERSE mode] Array to receive the scattered vector
481 .  v_B - [when in SCATTER_FORWARD mode] Vector to receive the scattered array
482 
483    Notes:
484    The entries in the array that do not correspond to interface nodes remain unaltered.
485 */
486 #undef __FUNCT__
487 #define __FUNCT__ "PCISScatterArrayNToVecB"
488 PetscErrorCode  PCISScatterArrayNToVecB(PetscScalar *array_N, Vec v_B, InsertMode imode, ScatterMode smode, PC pc)
489 {
490   PetscInt       i;
491   const PetscInt *idex;
492   PetscErrorCode ierr;
493   PetscScalar    *array_B;
494   PC_IS          *pcis = (PC_IS*)(pc->data);
495 
496   PetscFunctionBegin;
497   ierr = VecGetArray(v_B,&array_B);CHKERRQ(ierr);
498   ierr = ISGetIndices(pcis->is_B_local,&idex);CHKERRQ(ierr);
499 
500   if (smode == SCATTER_FORWARD) {
501     if (imode == INSERT_VALUES) {
502       for (i=0; i<pcis->n_B; i++) array_B[i] = array_N[idex[i]];
503     } else {  /* ADD_VALUES */
504       for (i=0; i<pcis->n_B; i++) array_B[i] += array_N[idex[i]];
505     }
506   } else {  /* SCATTER_REVERSE */
507     if (imode == INSERT_VALUES) {
508       for (i=0; i<pcis->n_B; i++) array_N[idex[i]] = array_B[i];
509     } else {  /* ADD_VALUES */
510       for (i=0; i<pcis->n_B; i++) array_N[idex[i]] += array_B[i];
511     }
512   }
513   ierr = ISRestoreIndices(pcis->is_B_local,&idex);CHKERRQ(ierr);
514   ierr = VecRestoreArray(v_B,&array_B);CHKERRQ(ierr);
515   PetscFunctionReturn(0);
516 }
517 
518 /* -------------------------------------------------------------------------- */
519 /*
520    PCISApplyInvSchur - Solves the Neumann problem related to applying the inverse of the Schur complement.
521    More precisely, solves the problem:
522                                         [ A_II  A_IB ] [ . ]   [ 0 ]
523                                         [            ] [   ] = [   ]
524                                         [ A_BI  A_BB ] [ x ]   [ b ]
525 
526    Input parameters:
527 .  pc - preconditioner context
528 .  b - vector of local interface nodes (including ghosts)
529 
530    Output parameters:
531 .  x - vector of local interface nodes (including ghosts); returns the application of the inverse of the Schur
532        complement to b
533 .  vec1_N - vector of local nodes (interior and interface, including ghosts); returns garbage (used as work space)
534 .  vec2_N - vector of local nodes (interior and interface, including ghosts); returns garbage (used as work space)
535 
536 */
537 #undef __FUNCT__
538 #define __FUNCT__ "PCISApplyInvSchur"
539 PetscErrorCode  PCISApplyInvSchur(PC pc, Vec b, Vec x, Vec vec1_N, Vec vec2_N)
540 {
541   PetscErrorCode ierr;
542   PC_IS          *pcis = (PC_IS*)(pc->data);
543 
544   PetscFunctionBegin;
545   /*
546     Neumann solvers.
547     Applying the inverse of the local Schur complement, i.e, solving a Neumann
548     Problem with zero at the interior nodes of the RHS and extracting the interface
549     part of the solution. inverse Schur complement is applied to b and the result
550     is stored in x.
551   */
552   /* Setting the RHS vec1_N */
553   ierr = VecSet(vec1_N,0.0);CHKERRQ(ierr);
554   ierr = VecScatterBegin(pcis->N_to_B,b,vec1_N,INSERT_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
555   ierr = VecScatterEnd  (pcis->N_to_B,b,vec1_N,INSERT_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
556   /* Checking for consistency of the RHS */
557   {
558     PetscBool flg = PETSC_FALSE;
559     ierr = PetscOptionsGetBool(NULL,"-pc_is_check_consistency",&flg,NULL);CHKERRQ(ierr);
560     if (flg) {
561       PetscScalar average;
562       PetscViewer viewer;
563       ierr = PetscViewerASCIIGetStdout(PetscObjectComm((PetscObject)pc),&viewer);CHKERRQ(ierr);
564 
565       ierr    = VecSum(vec1_N,&average);CHKERRQ(ierr);
566       average = average / ((PetscReal)pcis->n);
567       ierr    = PetscViewerASCIISynchronizedAllow(viewer,PETSC_TRUE);CHKERRQ(ierr);
568       if (pcis->pure_neumann) {
569         ierr = PetscViewerASCIISynchronizedPrintf(viewer,"Subdomain %04d is floating. Average = % 1.14e\n",PetscGlobalRank,PetscAbsScalar(average));CHKERRQ(ierr);
570       } else {
571         ierr = PetscViewerASCIISynchronizedPrintf(viewer,"Subdomain %04d is fixed.    Average = % 1.14e\n",PetscGlobalRank,PetscAbsScalar(average));CHKERRQ(ierr);
572       }
573       ierr = PetscViewerFlush(viewer);CHKERRQ(ierr);
574       ierr = PetscViewerASCIISynchronizedAllow(viewer,PETSC_FALSE);CHKERRQ(ierr);
575     }
576   }
577   /* Solving the system for vec2_N */
578   ierr = KSPSolve(pcis->ksp_N,vec1_N,vec2_N);CHKERRQ(ierr);
579   /* Extracting the local interface vector out of the solution */
580   ierr = VecScatterBegin(pcis->N_to_B,vec2_N,x,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
581   ierr = VecScatterEnd  (pcis->N_to_B,vec2_N,x,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
582   PetscFunctionReturn(0);
583 }
584 
585 
586 
587 
588 
589 
590 
591 
592 
593