1 2 #include <petscdmda.h> /*I "petscdmda.h" I*/ 3 #include <petsc/private/pcmgimpl.h> /*I "petscksp.h" I*/ 4 #include <petscctable.h> 5 6 typedef struct { 7 PCExoticType type; 8 Mat P; /* the constructed interpolation matrix */ 9 PetscBool directSolve; /* use direct LU factorization to construct interpolation */ 10 KSP ksp; 11 } PC_Exotic; 12 13 const char *const PCExoticTypes[] = {"face","wirebasket","PCExoticType","PC_Exotic",NULL}; 14 15 16 /* 17 DMDAGetWireBasketInterpolation - Gets the interpolation for a wirebasket based coarse space 18 19 */ 20 PetscErrorCode DMDAGetWireBasketInterpolation(PC pc,DM da,PC_Exotic *exotic,Mat Aglobal,MatReuse reuse,Mat *P) 21 { 22 PetscErrorCode ierr; 23 PetscInt dim,i,j,k,m,n,p,dof,Nint,Nface,Nwire,Nsurf,*Iint,*Isurf,cint = 0,csurf = 0,istart,jstart,kstart,*II,N,c = 0; 24 PetscInt mwidth,nwidth,pwidth,cnt,mp,np,pp,Ntotal,gl[26],*globals,Ng,*IIint,*IIsurf,Nt; 25 Mat Xint, Xsurf,Xint_tmp; 26 IS isint,issurf,is,row,col; 27 ISLocalToGlobalMapping ltg; 28 MPI_Comm comm; 29 Mat A,Aii,Ais,Asi,*Aholder,iAii; 30 MatFactorInfo info; 31 PetscScalar *xsurf,*xint; 32 const PetscScalar *rxint; 33 #if defined(PETSC_USE_DEBUG_foo) 34 PetscScalar tmp; 35 #endif 36 PetscTable ht; 37 38 PetscFunctionBegin; 39 ierr = DMDAGetInfo(da,&dim,NULL,NULL,NULL,&mp,&np,&pp,&dof,NULL,NULL,NULL,NULL,NULL);CHKERRQ(ierr); 40 if (dof != 1) SETERRQ(PetscObjectComm((PetscObject)da),PETSC_ERR_SUP,"Only for single field problems"); 41 if (dim != 3) SETERRQ(PetscObjectComm((PetscObject)da),PETSC_ERR_SUP,"Only coded for 3d problems"); 42 ierr = DMDAGetCorners(da,NULL,NULL,NULL,&m,&n,&p);CHKERRQ(ierr); 43 ierr = DMDAGetGhostCorners(da,&istart,&jstart,&kstart,&mwidth,&nwidth,&pwidth);CHKERRQ(ierr); 44 istart = istart ? -1 : 0; 45 jstart = jstart ? -1 : 0; 46 kstart = kstart ? -1 : 0; 47 48 /* 49 the columns of P are the interpolation of each coarse grid point (one for each vertex and edge) 50 to all the local degrees of freedom (this includes the vertices, edges and faces). 51 52 Xint are the subset of the interpolation into the interior 53 54 Xface are the interpolation onto faces but not into the interior 55 56 Xsurf are the interpolation onto the vertices and edges (the surfbasket) 57 Xint 58 Symbolically one could write P = (Xface) after interchanging the rows to match the natural ordering on the domain 59 Xsurf 60 */ 61 N = (m - istart)*(n - jstart)*(p - kstart); 62 Nint = (m-2-istart)*(n-2-jstart)*(p-2-kstart); 63 Nface = 2*((m-2-istart)*(n-2-jstart) + (m-2-istart)*(p-2-kstart) + (n-2-jstart)*(p-2-kstart)); 64 Nwire = 4*((m-2-istart) + (n-2-jstart) + (p-2-kstart)) + 8; 65 Nsurf = Nface + Nwire; 66 ierr = MatCreateSeqDense(MPI_COMM_SELF,Nint,26,NULL,&Xint);CHKERRQ(ierr); 67 ierr = MatCreateSeqDense(MPI_COMM_SELF,Nsurf,26,NULL,&Xsurf);CHKERRQ(ierr); 68 ierr = MatDenseGetArray(Xsurf,&xsurf);CHKERRQ(ierr); 69 70 /* 71 Require that all 12 edges and 6 faces have at least one grid point. Otherwise some of the columns of 72 Xsurf will be all zero (thus making the coarse matrix singular). 73 */ 74 if (m-istart < 3) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Number of grid points per process in X direction must be at least 3"); 75 if (n-jstart < 3) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Number of grid points per process in Y direction must be at least 3"); 76 if (p-kstart < 3) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Number of grid points per process in Z direction must be at least 3"); 77 78 cnt = 0; 79 80 xsurf[cnt++] = 1; 81 for (i=1; i<m-istart-1; i++) xsurf[cnt++ + Nsurf] = 1; 82 xsurf[cnt++ + 2*Nsurf] = 1; 83 84 for (j=1; j<n-1-jstart; j++) { 85 xsurf[cnt++ + 3*Nsurf] = 1; 86 for (i=1; i<m-istart-1; i++) xsurf[cnt++ + 4*Nsurf] = 1; 87 xsurf[cnt++ + 5*Nsurf] = 1; 88 } 89 90 xsurf[cnt++ + 6*Nsurf] = 1; 91 for (i=1; i<m-istart-1; i++) xsurf[cnt++ + 7*Nsurf] = 1; 92 xsurf[cnt++ + 8*Nsurf] = 1; 93 94 for (k=1; k<p-1-kstart; k++) { 95 xsurf[cnt++ + 9*Nsurf] = 1; 96 for (i=1; i<m-istart-1; i++) xsurf[cnt++ + 10*Nsurf] = 1; 97 xsurf[cnt++ + 11*Nsurf] = 1; 98 99 for (j=1; j<n-1-jstart; j++) { 100 xsurf[cnt++ + 12*Nsurf] = 1; 101 /* these are the interior nodes */ 102 xsurf[cnt++ + 13*Nsurf] = 1; 103 } 104 105 xsurf[cnt++ + 14*Nsurf] = 1; 106 for (i=1; i<m-istart-1; i++) xsurf[cnt++ + 15*Nsurf] = 1; 107 xsurf[cnt++ + 16*Nsurf] = 1; 108 } 109 110 xsurf[cnt++ + 17*Nsurf] = 1; 111 for (i=1; i<m-istart-1; i++) xsurf[cnt++ + 18*Nsurf] = 1; 112 xsurf[cnt++ + 19*Nsurf] = 1; 113 114 for (j=1;j<n-1-jstart;j++) { 115 xsurf[cnt++ + 20*Nsurf] = 1; 116 for (i=1; i<m-istart-1; i++) xsurf[cnt++ + 21*Nsurf] = 1; 117 xsurf[cnt++ + 22*Nsurf] = 1; 118 } 119 120 xsurf[cnt++ + 23*Nsurf] = 1; 121 for (i=1; i<m-istart-1; i++) xsurf[cnt++ + 24*Nsurf] = 1; 122 xsurf[cnt++ + 25*Nsurf] = 1; 123 124 125 /* interpolations only sum to 1 when using direct solver */ 126 #if defined(PETSC_USE_DEBUG_foo) 127 for (i=0; i<Nsurf; i++) { 128 tmp = 0.0; 129 for (j=0; j<26; j++) tmp += xsurf[i+j*Nsurf]; 130 if (PetscAbsScalar(tmp-1.0) > 1.e-10) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Wrong Xsurf interpolation at i %D value %g",i,(double)PetscAbsScalar(tmp)); 131 } 132 #endif 133 ierr = MatDenseRestoreArray(Xsurf,&xsurf);CHKERRQ(ierr); 134 /* ierr = MatView(Xsurf,PETSC_VIEWER_STDOUT_WORLD);CHKERRQ(ierr);*/ 135 136 137 /* 138 I are the indices for all the needed vertices (in global numbering) 139 Iint are the indices for the interior values, I surf for the surface values 140 (This is just for the part of the global matrix obtained with MatCreateSubMatrix(), it 141 is NOT the local DMDA ordering.) 142 IIint and IIsurf are the same as the Iint, Isurf except they are in the global numbering 143 */ 144 #define Endpoint(a,start,b) (a == 0 || a == (b-1-start)) 145 ierr = PetscMalloc3(N,&II,Nint,&Iint,Nsurf,&Isurf);CHKERRQ(ierr); 146 ierr = PetscMalloc2(Nint,&IIint,Nsurf,&IIsurf);CHKERRQ(ierr); 147 for (k=0; k<p-kstart; k++) { 148 for (j=0; j<n-jstart; j++) { 149 for (i=0; i<m-istart; i++) { 150 II[c++] = i + j*mwidth + k*mwidth*nwidth; 151 152 if (!Endpoint(i,istart,m) && !Endpoint(j,jstart,n) && !Endpoint(k,kstart,p)) { 153 IIint[cint] = i + j*mwidth + k*mwidth*nwidth; 154 Iint[cint++] = i + j*(m-istart) + k*(m-istart)*(n-jstart); 155 } else { 156 IIsurf[csurf] = i + j*mwidth + k*mwidth*nwidth; 157 Isurf[csurf++] = i + j*(m-istart) + k*(m-istart)*(n-jstart); 158 } 159 } 160 } 161 } 162 if (c != N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"c != N"); 163 if (cint != Nint) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"cint != Nint"); 164 if (csurf != Nsurf) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"csurf != Nsurf"); 165 ierr = DMGetLocalToGlobalMapping(da,<g);CHKERRQ(ierr); 166 ierr = ISLocalToGlobalMappingApply(ltg,N,II,II);CHKERRQ(ierr); 167 ierr = ISLocalToGlobalMappingApply(ltg,Nint,IIint,IIint);CHKERRQ(ierr); 168 ierr = ISLocalToGlobalMappingApply(ltg,Nsurf,IIsurf,IIsurf);CHKERRQ(ierr); 169 ierr = PetscObjectGetComm((PetscObject)da,&comm);CHKERRQ(ierr); 170 ierr = ISCreateGeneral(comm,N,II,PETSC_COPY_VALUES,&is);CHKERRQ(ierr); 171 ierr = ISCreateGeneral(PETSC_COMM_SELF,Nint,Iint,PETSC_COPY_VALUES,&isint);CHKERRQ(ierr); 172 ierr = ISCreateGeneral(PETSC_COMM_SELF,Nsurf,Isurf,PETSC_COPY_VALUES,&issurf);CHKERRQ(ierr); 173 ierr = PetscFree3(II,Iint,Isurf);CHKERRQ(ierr); 174 175 ierr = MatCreateSubMatrices(Aglobal,1,&is,&is,MAT_INITIAL_MATRIX,&Aholder);CHKERRQ(ierr); 176 A = *Aholder; 177 ierr = PetscFree(Aholder);CHKERRQ(ierr); 178 179 ierr = MatCreateSubMatrix(A,isint,isint,MAT_INITIAL_MATRIX,&Aii);CHKERRQ(ierr); 180 ierr = MatCreateSubMatrix(A,isint,issurf,MAT_INITIAL_MATRIX,&Ais);CHKERRQ(ierr); 181 ierr = MatCreateSubMatrix(A,issurf,isint,MAT_INITIAL_MATRIX,&Asi);CHKERRQ(ierr); 182 183 /* 184 Solve for the interpolation onto the interior Xint 185 */ 186 ierr = MatMatMult(Ais,Xsurf,MAT_INITIAL_MATRIX,PETSC_DETERMINE,&Xint_tmp);CHKERRQ(ierr); 187 ierr = MatScale(Xint_tmp,-1.0);CHKERRQ(ierr); 188 if (exotic->directSolve) { 189 ierr = MatGetFactor(Aii,MATSOLVERPETSC,MAT_FACTOR_LU,&iAii);CHKERRQ(ierr); 190 ierr = MatFactorInfoInitialize(&info);CHKERRQ(ierr); 191 ierr = MatGetOrdering(Aii,MATORDERINGND,&row,&col);CHKERRQ(ierr); 192 ierr = MatLUFactorSymbolic(iAii,Aii,row,col,&info);CHKERRQ(ierr); 193 ierr = ISDestroy(&row);CHKERRQ(ierr); 194 ierr = ISDestroy(&col);CHKERRQ(ierr); 195 ierr = MatLUFactorNumeric(iAii,Aii,&info);CHKERRQ(ierr); 196 ierr = MatMatSolve(iAii,Xint_tmp,Xint);CHKERRQ(ierr); 197 ierr = MatDestroy(&iAii);CHKERRQ(ierr); 198 } else { 199 Vec b,x; 200 PetscScalar *xint_tmp; 201 202 ierr = MatDenseGetArray(Xint,&xint);CHKERRQ(ierr); 203 ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,1,Nint,NULL,&x);CHKERRQ(ierr); 204 ierr = MatDenseGetArray(Xint_tmp,&xint_tmp);CHKERRQ(ierr); 205 ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,1,Nint,NULL,&b);CHKERRQ(ierr); 206 ierr = KSPSetOperators(exotic->ksp,Aii,Aii);CHKERRQ(ierr); 207 for (i=0; i<26; i++) { 208 ierr = VecPlaceArray(x,xint+i*Nint);CHKERRQ(ierr); 209 ierr = VecPlaceArray(b,xint_tmp+i*Nint);CHKERRQ(ierr); 210 ierr = KSPSolve(exotic->ksp,b,x);CHKERRQ(ierr); 211 ierr = KSPCheckSolve(exotic->ksp,pc,x);CHKERRQ(ierr); 212 ierr = VecResetArray(x);CHKERRQ(ierr); 213 ierr = VecResetArray(b);CHKERRQ(ierr); 214 } 215 ierr = MatDenseRestoreArray(Xint,&xint);CHKERRQ(ierr); 216 ierr = MatDenseRestoreArray(Xint_tmp,&xint_tmp);CHKERRQ(ierr); 217 ierr = VecDestroy(&x);CHKERRQ(ierr); 218 ierr = VecDestroy(&b);CHKERRQ(ierr); 219 } 220 ierr = MatDestroy(&Xint_tmp);CHKERRQ(ierr); 221 222 #if defined(PETSC_USE_DEBUG_foo) 223 ierr = MatDenseGetArrayRead(Xint,&rxint);CHKERRQ(ierr); 224 for (i=0; i<Nint; i++) { 225 tmp = 0.0; 226 for (j=0; j<26; j++) tmp += rxint[i+j*Nint]; 227 228 if (PetscAbsScalar(tmp-1.0) > 1.e-10) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Wrong Xint interpolation at i %D value %g",i,(double)PetscAbsScalar(tmp)); 229 } 230 ierr = MatDenseRestoreArrayRead(Xint,&rxint);CHKERRQ(ierr); 231 /* ierr =MatView(Xint,PETSC_VIEWER_STDOUT_WORLD);CHKERRQ(ierr); */ 232 #endif 233 234 235 /* total vertices total faces total edges */ 236 Ntotal = (mp + 1)*(np + 1)*(pp + 1) + mp*np*(pp+1) + mp*pp*(np+1) + np*pp*(mp+1) + mp*(np+1)*(pp+1) + np*(mp+1)*(pp+1) + pp*(mp+1)*(np+1); 237 238 /* 239 For each vertex, edge, face on process (in the same orderings as used above) determine its local number including ghost points 240 */ 241 cnt = 0; 242 243 gl[cnt++] = 0; { gl[cnt++] = 1;} gl[cnt++] = m-istart-1; 244 { gl[cnt++] = mwidth; { gl[cnt++] = mwidth+1;} gl[cnt++] = mwidth + m-istart-1;} 245 gl[cnt++] = mwidth*(n-jstart-1); { gl[cnt++] = mwidth*(n-jstart-1)+1;} gl[cnt++] = mwidth*(n-jstart-1) + m-istart-1; 246 { 247 gl[cnt++] = mwidth*nwidth; { gl[cnt++] = mwidth*nwidth+1;} gl[cnt++] = mwidth*nwidth+ m-istart-1; 248 { gl[cnt++] = mwidth*nwidth + mwidth; /* these are the interior nodes */ gl[cnt++] = mwidth*nwidth + mwidth+m-istart-1;} 249 gl[cnt++] = mwidth*nwidth+ mwidth*(n-jstart-1); { gl[cnt++] = mwidth*nwidth+mwidth*(n-jstart-1)+1;} gl[cnt++] = mwidth*nwidth+mwidth*(n-jstart-1) + m-istart-1; 250 } 251 gl[cnt++] = mwidth*nwidth*(p-kstart-1); { gl[cnt++] = mwidth*nwidth*(p-kstart-1)+1;} gl[cnt++] = mwidth*nwidth*(p-kstart-1) + m-istart-1; 252 { gl[cnt++] = mwidth*nwidth*(p-kstart-1) + mwidth; { gl[cnt++] = mwidth*nwidth*(p-kstart-1) + mwidth+1;} gl[cnt++] = mwidth*nwidth*(p-kstart-1)+mwidth+m-istart-1;} 253 gl[cnt++] = mwidth*nwidth*(p-kstart-1) + mwidth*(n-jstart-1); { gl[cnt++] = mwidth*nwidth*(p-kstart-1)+ mwidth*(n-jstart-1)+1;} gl[cnt++] = mwidth*nwidth*(p-kstart-1) + mwidth*(n-jstart-1) + m-istart-1; 254 255 /* PetscIntView(26,gl,PETSC_VIEWER_STDOUT_WORLD); */ 256 /* convert that to global numbering and get them on all processes */ 257 ierr = ISLocalToGlobalMappingApply(ltg,26,gl,gl);CHKERRQ(ierr); 258 /* PetscIntView(26,gl,PETSC_VIEWER_STDOUT_WORLD); */ 259 ierr = PetscMalloc1(26*mp*np*pp,&globals);CHKERRQ(ierr); 260 ierr = MPI_Allgather(gl,26,MPIU_INT,globals,26,MPIU_INT,PetscObjectComm((PetscObject)da));CHKERRQ(ierr); 261 262 /* Number the coarse grid points from 0 to Ntotal */ 263 ierr = MatGetSize(Aglobal,&Nt,NULL);CHKERRQ(ierr); 264 ierr = PetscTableCreate(Ntotal/3,Nt+1,&ht);CHKERRQ(ierr); 265 for (i=0; i<26*mp*np*pp; i++) { 266 ierr = PetscTableAddCount(ht,globals[i]+1);CHKERRQ(ierr); 267 } 268 ierr = PetscTableGetCount(ht,&cnt);CHKERRQ(ierr); 269 if (cnt != Ntotal) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Hash table size %D not equal to total number coarse grid points %D",cnt,Ntotal); 270 ierr = PetscFree(globals);CHKERRQ(ierr); 271 for (i=0; i<26; i++) { 272 ierr = PetscTableFind(ht,gl[i]+1,&gl[i]);CHKERRQ(ierr); 273 gl[i]--; 274 } 275 ierr = PetscTableDestroy(&ht);CHKERRQ(ierr); 276 /* PetscIntView(26,gl,PETSC_VIEWER_STDOUT_WORLD); */ 277 278 /* construct global interpolation matrix */ 279 ierr = MatGetLocalSize(Aglobal,&Ng,NULL);CHKERRQ(ierr); 280 if (reuse == MAT_INITIAL_MATRIX) { 281 ierr = MatCreateAIJ(PetscObjectComm((PetscObject)da),Ng,PETSC_DECIDE,PETSC_DECIDE,Ntotal,Nint+Nsurf,NULL,Nint+Nsurf,NULL,P);CHKERRQ(ierr); 282 } else { 283 ierr = MatZeroEntries(*P);CHKERRQ(ierr); 284 } 285 ierr = MatSetOption(*P,MAT_ROW_ORIENTED,PETSC_FALSE);CHKERRQ(ierr); 286 ierr = MatDenseGetArrayRead(Xint,&rxint);CHKERRQ(ierr); 287 ierr = MatSetValues(*P,Nint,IIint,26,gl,rxint,INSERT_VALUES);CHKERRQ(ierr); 288 ierr = MatDenseRestoreArrayRead(Xint,&rxint);CHKERRQ(ierr); 289 ierr = MatDenseGetArrayRead(Xsurf,&rxint);CHKERRQ(ierr); 290 ierr = MatSetValues(*P,Nsurf,IIsurf,26,gl,rxint,INSERT_VALUES);CHKERRQ(ierr); 291 ierr = MatDenseRestoreArrayRead(Xsurf,&rxint);CHKERRQ(ierr); 292 ierr = MatAssemblyBegin(*P,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 293 ierr = MatAssemblyEnd(*P,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 294 ierr = PetscFree2(IIint,IIsurf);CHKERRQ(ierr); 295 296 #if defined(PETSC_USE_DEBUG_foo) 297 { 298 Vec x,y; 299 PetscScalar *yy; 300 ierr = VecCreateMPI(PetscObjectComm((PetscObject)da),Ng,PETSC_DETERMINE,&y);CHKERRQ(ierr); 301 ierr = VecCreateMPI(PetscObjectComm((PetscObject)da),PETSC_DETERMINE,Ntotal,&x);CHKERRQ(ierr); 302 ierr = VecSet(x,1.0);CHKERRQ(ierr); 303 ierr = MatMult(*P,x,y);CHKERRQ(ierr); 304 ierr = VecGetArray(y,&yy);CHKERRQ(ierr); 305 for (i=0; i<Ng; i++) { 306 if (PetscAbsScalar(yy[i]-1.0) > 1.e-10) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Wrong p interpolation at i %D value %g",i,(double)PetscAbsScalar(yy[i])); 307 } 308 ierr = VecRestoreArray(y,&yy);CHKERRQ(ierr); 309 ierr = VecDestroy(x);CHKERRQ(ierr); 310 ierr = VecDestroy(y);CHKERRQ(ierr); 311 } 312 #endif 313 314 ierr = MatDestroy(&Aii);CHKERRQ(ierr); 315 ierr = MatDestroy(&Ais);CHKERRQ(ierr); 316 ierr = MatDestroy(&Asi);CHKERRQ(ierr); 317 ierr = MatDestroy(&A);CHKERRQ(ierr); 318 ierr = ISDestroy(&is);CHKERRQ(ierr); 319 ierr = ISDestroy(&isint);CHKERRQ(ierr); 320 ierr = ISDestroy(&issurf);CHKERRQ(ierr); 321 ierr = MatDestroy(&Xint);CHKERRQ(ierr); 322 ierr = MatDestroy(&Xsurf);CHKERRQ(ierr); 323 PetscFunctionReturn(0); 324 } 325 326 /* 327 DMDAGetFaceInterpolation - Gets the interpolation for a face based coarse space 328 329 */ 330 PetscErrorCode DMDAGetFaceInterpolation(PC pc,DM da,PC_Exotic *exotic,Mat Aglobal,MatReuse reuse,Mat *P) 331 { 332 PetscErrorCode ierr; 333 PetscInt dim,i,j,k,m,n,p,dof,Nint,Nface,Nwire,Nsurf,*Iint,*Isurf,cint = 0,csurf = 0,istart,jstart,kstart,*II,N,c = 0; 334 PetscInt mwidth,nwidth,pwidth,cnt,mp,np,pp,Ntotal,gl[6],*globals,Ng,*IIint,*IIsurf,Nt; 335 Mat Xint, Xsurf,Xint_tmp; 336 IS isint,issurf,is,row,col; 337 ISLocalToGlobalMapping ltg; 338 MPI_Comm comm; 339 Mat A,Aii,Ais,Asi,*Aholder,iAii; 340 MatFactorInfo info; 341 PetscScalar *xsurf,*xint; 342 const PetscScalar *rxint; 343 #if defined(PETSC_USE_DEBUG_foo) 344 PetscScalar tmp; 345 #endif 346 PetscTable ht; 347 348 PetscFunctionBegin; 349 ierr = DMDAGetInfo(da,&dim,NULL,NULL,NULL,&mp,&np,&pp,&dof,NULL,NULL,NULL,NULL,NULL);CHKERRQ(ierr); 350 if (dof != 1) SETERRQ(PetscObjectComm((PetscObject)da),PETSC_ERR_SUP,"Only for single field problems"); 351 if (dim != 3) SETERRQ(PetscObjectComm((PetscObject)da),PETSC_ERR_SUP,"Only coded for 3d problems"); 352 ierr = DMDAGetCorners(da,NULL,NULL,NULL,&m,&n,&p);CHKERRQ(ierr); 353 ierr = DMDAGetGhostCorners(da,&istart,&jstart,&kstart,&mwidth,&nwidth,&pwidth);CHKERRQ(ierr); 354 istart = istart ? -1 : 0; 355 jstart = jstart ? -1 : 0; 356 kstart = kstart ? -1 : 0; 357 358 /* 359 the columns of P are the interpolation of each coarse grid point (one for each vertex and edge) 360 to all the local degrees of freedom (this includes the vertices, edges and faces). 361 362 Xint are the subset of the interpolation into the interior 363 364 Xface are the interpolation onto faces but not into the interior 365 366 Xsurf are the interpolation onto the vertices and edges (the surfbasket) 367 Xint 368 Symbolically one could write P = (Xface) after interchanging the rows to match the natural ordering on the domain 369 Xsurf 370 */ 371 N = (m - istart)*(n - jstart)*(p - kstart); 372 Nint = (m-2-istart)*(n-2-jstart)*(p-2-kstart); 373 Nface = 2*((m-2-istart)*(n-2-jstart) + (m-2-istart)*(p-2-kstart) + (n-2-jstart)*(p-2-kstart)); 374 Nwire = 4*((m-2-istart) + (n-2-jstart) + (p-2-kstart)) + 8; 375 Nsurf = Nface + Nwire; 376 ierr = MatCreateSeqDense(MPI_COMM_SELF,Nint,6,NULL,&Xint);CHKERRQ(ierr); 377 ierr = MatCreateSeqDense(MPI_COMM_SELF,Nsurf,6,NULL,&Xsurf);CHKERRQ(ierr); 378 ierr = MatDenseGetArray(Xsurf,&xsurf);CHKERRQ(ierr); 379 380 /* 381 Require that all 12 edges and 6 faces have at least one grid point. Otherwise some of the columns of 382 Xsurf will be all zero (thus making the coarse matrix singular). 383 */ 384 if (m-istart < 3) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Number of grid points per process in X direction must be at least 3"); 385 if (n-jstart < 3) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Number of grid points per process in Y direction must be at least 3"); 386 if (p-kstart < 3) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Number of grid points per process in Z direction must be at least 3"); 387 388 cnt = 0; 389 for (j=1; j<n-1-jstart; j++) { 390 for (i=1; i<m-istart-1; i++) xsurf[cnt++ + 0*Nsurf] = 1; 391 } 392 393 for (k=1; k<p-1-kstart; k++) { 394 for (i=1; i<m-istart-1; i++) xsurf[cnt++ + 1*Nsurf] = 1; 395 for (j=1; j<n-1-jstart; j++) { 396 xsurf[cnt++ + 2*Nsurf] = 1; 397 /* these are the interior nodes */ 398 xsurf[cnt++ + 3*Nsurf] = 1; 399 } 400 for (i=1; i<m-istart-1; i++) xsurf[cnt++ + 4*Nsurf] = 1; 401 } 402 for (j=1;j<n-1-jstart;j++) { 403 for (i=1; i<m-istart-1; i++) xsurf[cnt++ + 5*Nsurf] = 1; 404 } 405 406 #if defined(PETSC_USE_DEBUG_foo) 407 for (i=0; i<Nsurf; i++) { 408 tmp = 0.0; 409 for (j=0; j<6; j++) tmp += xsurf[i+j*Nsurf]; 410 411 if (PetscAbsScalar(tmp-1.0) > 1.e-10) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Wrong Xsurf interpolation at i %D value %g",i,(double)PetscAbsScalar(tmp)); 412 } 413 #endif 414 ierr = MatDenseRestoreArray(Xsurf,&xsurf);CHKERRQ(ierr); 415 /* ierr = MatView(Xsurf,PETSC_VIEWER_STDOUT_WORLD);CHKERRQ(ierr);*/ 416 417 418 /* 419 I are the indices for all the needed vertices (in global numbering) 420 Iint are the indices for the interior values, I surf for the surface values 421 (This is just for the part of the global matrix obtained with MatCreateSubMatrix(), it 422 is NOT the local DMDA ordering.) 423 IIint and IIsurf are the same as the Iint, Isurf except they are in the global numbering 424 */ 425 #define Endpoint(a,start,b) (a == 0 || a == (b-1-start)) 426 ierr = PetscMalloc3(N,&II,Nint,&Iint,Nsurf,&Isurf);CHKERRQ(ierr); 427 ierr = PetscMalloc2(Nint,&IIint,Nsurf,&IIsurf);CHKERRQ(ierr); 428 for (k=0; k<p-kstart; k++) { 429 for (j=0; j<n-jstart; j++) { 430 for (i=0; i<m-istart; i++) { 431 II[c++] = i + j*mwidth + k*mwidth*nwidth; 432 433 if (!Endpoint(i,istart,m) && !Endpoint(j,jstart,n) && !Endpoint(k,kstart,p)) { 434 IIint[cint] = i + j*mwidth + k*mwidth*nwidth; 435 Iint[cint++] = i + j*(m-istart) + k*(m-istart)*(n-jstart); 436 } else { 437 IIsurf[csurf] = i + j*mwidth + k*mwidth*nwidth; 438 Isurf[csurf++] = i + j*(m-istart) + k*(m-istart)*(n-jstart); 439 } 440 } 441 } 442 } 443 if (c != N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"c != N"); 444 if (cint != Nint) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"cint != Nint"); 445 if (csurf != Nsurf) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"csurf != Nsurf"); 446 ierr = DMGetLocalToGlobalMapping(da,<g);CHKERRQ(ierr); 447 ierr = ISLocalToGlobalMappingApply(ltg,N,II,II);CHKERRQ(ierr); 448 ierr = ISLocalToGlobalMappingApply(ltg,Nint,IIint,IIint);CHKERRQ(ierr); 449 ierr = ISLocalToGlobalMappingApply(ltg,Nsurf,IIsurf,IIsurf);CHKERRQ(ierr); 450 ierr = PetscObjectGetComm((PetscObject)da,&comm);CHKERRQ(ierr); 451 ierr = ISCreateGeneral(comm,N,II,PETSC_COPY_VALUES,&is);CHKERRQ(ierr); 452 ierr = ISCreateGeneral(PETSC_COMM_SELF,Nint,Iint,PETSC_COPY_VALUES,&isint);CHKERRQ(ierr); 453 ierr = ISCreateGeneral(PETSC_COMM_SELF,Nsurf,Isurf,PETSC_COPY_VALUES,&issurf);CHKERRQ(ierr); 454 ierr = PetscFree3(II,Iint,Isurf);CHKERRQ(ierr); 455 456 ierr = ISSort(is);CHKERRQ(ierr); 457 ierr = MatCreateSubMatrices(Aglobal,1,&is,&is,MAT_INITIAL_MATRIX,&Aholder);CHKERRQ(ierr); 458 A = *Aholder; 459 ierr = PetscFree(Aholder);CHKERRQ(ierr); 460 461 ierr = MatCreateSubMatrix(A,isint,isint,MAT_INITIAL_MATRIX,&Aii);CHKERRQ(ierr); 462 ierr = MatCreateSubMatrix(A,isint,issurf,MAT_INITIAL_MATRIX,&Ais);CHKERRQ(ierr); 463 ierr = MatCreateSubMatrix(A,issurf,isint,MAT_INITIAL_MATRIX,&Asi);CHKERRQ(ierr); 464 465 /* 466 Solve for the interpolation onto the interior Xint 467 */ 468 ierr = MatMatMult(Ais,Xsurf,MAT_INITIAL_MATRIX,PETSC_DETERMINE,&Xint_tmp);CHKERRQ(ierr); 469 ierr = MatScale(Xint_tmp,-1.0);CHKERRQ(ierr); 470 471 if (exotic->directSolve) { 472 ierr = MatGetFactor(Aii,MATSOLVERPETSC,MAT_FACTOR_LU,&iAii);CHKERRQ(ierr); 473 ierr = MatFactorInfoInitialize(&info);CHKERRQ(ierr); 474 ierr = MatGetOrdering(Aii,MATORDERINGND,&row,&col);CHKERRQ(ierr); 475 ierr = MatLUFactorSymbolic(iAii,Aii,row,col,&info);CHKERRQ(ierr); 476 ierr = ISDestroy(&row);CHKERRQ(ierr); 477 ierr = ISDestroy(&col);CHKERRQ(ierr); 478 ierr = MatLUFactorNumeric(iAii,Aii,&info);CHKERRQ(ierr); 479 ierr = MatMatSolve(iAii,Xint_tmp,Xint);CHKERRQ(ierr); 480 ierr = MatDestroy(&iAii);CHKERRQ(ierr); 481 } else { 482 Vec b,x; 483 PetscScalar *xint_tmp; 484 485 ierr = MatDenseGetArray(Xint,&xint);CHKERRQ(ierr); 486 ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,1,Nint,NULL,&x);CHKERRQ(ierr); 487 ierr = MatDenseGetArray(Xint_tmp,&xint_tmp);CHKERRQ(ierr); 488 ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,1,Nint,NULL,&b);CHKERRQ(ierr); 489 ierr = KSPSetOperators(exotic->ksp,Aii,Aii);CHKERRQ(ierr); 490 for (i=0; i<6; i++) { 491 ierr = VecPlaceArray(x,xint+i*Nint);CHKERRQ(ierr); 492 ierr = VecPlaceArray(b,xint_tmp+i*Nint);CHKERRQ(ierr); 493 ierr = KSPSolve(exotic->ksp,b,x);CHKERRQ(ierr); 494 ierr = KSPCheckSolve(exotic->ksp,pc,x);CHKERRQ(ierr); 495 ierr = VecResetArray(x);CHKERRQ(ierr); 496 ierr = VecResetArray(b);CHKERRQ(ierr); 497 } 498 ierr = MatDenseRestoreArray(Xint,&xint);CHKERRQ(ierr); 499 ierr = MatDenseRestoreArray(Xint_tmp,&xint_tmp);CHKERRQ(ierr); 500 ierr = VecDestroy(&x);CHKERRQ(ierr); 501 ierr = VecDestroy(&b);CHKERRQ(ierr); 502 } 503 ierr = MatDestroy(&Xint_tmp);CHKERRQ(ierr); 504 505 #if defined(PETSC_USE_DEBUG_foo) 506 ierr = MatDenseGetArrayRead(Xint,&rxint);CHKERRQ(ierr); 507 for (i=0; i<Nint; i++) { 508 tmp = 0.0; 509 for (j=0; j<6; j++) tmp += rxint[i+j*Nint]; 510 511 if (PetscAbsScalar(tmp-1.0) > 1.e-10) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Wrong Xint interpolation at i %D value %g",i,(double)PetscAbsScalar(tmp)); 512 } 513 ierr = MatDenseRestoreArrayRead(Xint,&rxint);CHKERRQ(ierr); 514 /* ierr =MatView(Xint,PETSC_VIEWER_STDOUT_WORLD);CHKERRQ(ierr); */ 515 #endif 516 517 518 /* total faces */ 519 Ntotal = mp*np*(pp+1) + mp*pp*(np+1) + np*pp*(mp+1); 520 521 /* 522 For each vertex, edge, face on process (in the same orderings as used above) determine its local number including ghost points 523 */ 524 cnt = 0; 525 { gl[cnt++] = mwidth+1;} 526 { 527 { gl[cnt++] = mwidth*nwidth+1;} 528 { gl[cnt++] = mwidth*nwidth + mwidth; /* these are the interior nodes */ gl[cnt++] = mwidth*nwidth + mwidth+m-istart-1;} 529 { gl[cnt++] = mwidth*nwidth+mwidth*(n-jstart-1)+1;} 530 } 531 { gl[cnt++] = mwidth*nwidth*(p-kstart-1) + mwidth+1;} 532 533 /* PetscIntView(6,gl,PETSC_VIEWER_STDOUT_WORLD); */ 534 /* convert that to global numbering and get them on all processes */ 535 ierr = ISLocalToGlobalMappingApply(ltg,6,gl,gl);CHKERRQ(ierr); 536 /* PetscIntView(6,gl,PETSC_VIEWER_STDOUT_WORLD); */ 537 ierr = PetscMalloc1(6*mp*np*pp,&globals);CHKERRQ(ierr); 538 ierr = MPI_Allgather(gl,6,MPIU_INT,globals,6,MPIU_INT,PetscObjectComm((PetscObject)da));CHKERRQ(ierr); 539 540 /* Number the coarse grid points from 0 to Ntotal */ 541 ierr = MatGetSize(Aglobal,&Nt,NULL);CHKERRQ(ierr); 542 ierr = PetscTableCreate(Ntotal/3,Nt+1,&ht);CHKERRQ(ierr); 543 for (i=0; i<6*mp*np*pp; i++) { 544 ierr = PetscTableAddCount(ht,globals[i]+1);CHKERRQ(ierr); 545 } 546 ierr = PetscTableGetCount(ht,&cnt);CHKERRQ(ierr); 547 if (cnt != Ntotal) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Hash table size %D not equal to total number coarse grid points %D",cnt,Ntotal); 548 ierr = PetscFree(globals);CHKERRQ(ierr); 549 for (i=0; i<6; i++) { 550 ierr = PetscTableFind(ht,gl[i]+1,&gl[i]);CHKERRQ(ierr); 551 gl[i]--; 552 } 553 ierr = PetscTableDestroy(&ht);CHKERRQ(ierr); 554 /* PetscIntView(6,gl,PETSC_VIEWER_STDOUT_WORLD); */ 555 556 /* construct global interpolation matrix */ 557 ierr = MatGetLocalSize(Aglobal,&Ng,NULL);CHKERRQ(ierr); 558 if (reuse == MAT_INITIAL_MATRIX) { 559 ierr = MatCreateAIJ(PetscObjectComm((PetscObject)da),Ng,PETSC_DECIDE,PETSC_DECIDE,Ntotal,Nint+Nsurf,NULL,Nint,NULL,P);CHKERRQ(ierr); 560 } else { 561 ierr = MatZeroEntries(*P);CHKERRQ(ierr); 562 } 563 ierr = MatSetOption(*P,MAT_ROW_ORIENTED,PETSC_FALSE);CHKERRQ(ierr); 564 ierr = MatDenseGetArrayRead(Xint,&rxint);CHKERRQ(ierr); 565 ierr = MatSetValues(*P,Nint,IIint,6,gl,rxint,INSERT_VALUES);CHKERRQ(ierr); 566 ierr = MatDenseRestoreArrayRead(Xint,&rxint);CHKERRQ(ierr); 567 ierr = MatDenseGetArrayRead(Xsurf,&rxint);CHKERRQ(ierr); 568 ierr = MatSetValues(*P,Nsurf,IIsurf,6,gl,rxint,INSERT_VALUES);CHKERRQ(ierr); 569 ierr = MatDenseRestoreArrayRead(Xsurf,&rxint);CHKERRQ(ierr); 570 ierr = MatAssemblyBegin(*P,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 571 ierr = MatAssemblyEnd(*P,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 572 ierr = PetscFree2(IIint,IIsurf);CHKERRQ(ierr); 573 574 575 #if defined(PETSC_USE_DEBUG_foo) 576 { 577 Vec x,y; 578 PetscScalar *yy; 579 ierr = VecCreateMPI(PetscObjectComm((PetscObject)da),Ng,PETSC_DETERMINE,&y);CHKERRQ(ierr); 580 ierr = VecCreateMPI(PetscObjectComm((PetscObject)da),PETSC_DETERMINE,Ntotal,&x);CHKERRQ(ierr); 581 ierr = VecSet(x,1.0);CHKERRQ(ierr); 582 ierr = MatMult(*P,x,y);CHKERRQ(ierr); 583 ierr = VecGetArray(y,&yy);CHKERRQ(ierr); 584 for (i=0; i<Ng; i++) { 585 if (PetscAbsScalar(yy[i]-1.0) > 1.e-10) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Wrong p interpolation at i %D value %g",i,(double)PetscAbsScalar(yy[i])); 586 } 587 ierr = VecRestoreArray(y,&yy);CHKERRQ(ierr); 588 ierr = VecDestroy(x);CHKERRQ(ierr); 589 ierr = VecDestroy(y);CHKERRQ(ierr); 590 } 591 #endif 592 593 ierr = MatDestroy(&Aii);CHKERRQ(ierr); 594 ierr = MatDestroy(&Ais);CHKERRQ(ierr); 595 ierr = MatDestroy(&Asi);CHKERRQ(ierr); 596 ierr = MatDestroy(&A);CHKERRQ(ierr); 597 ierr = ISDestroy(&is);CHKERRQ(ierr); 598 ierr = ISDestroy(&isint);CHKERRQ(ierr); 599 ierr = ISDestroy(&issurf);CHKERRQ(ierr); 600 ierr = MatDestroy(&Xint);CHKERRQ(ierr); 601 ierr = MatDestroy(&Xsurf);CHKERRQ(ierr); 602 PetscFunctionReturn(0); 603 } 604 605 606 /*@ 607 PCExoticSetType - Sets the type of coarse grid interpolation to use 608 609 Logically Collective on PC 610 611 Input Parameters: 612 + pc - the preconditioner context 613 - type - either PC_EXOTIC_FACE or PC_EXOTIC_WIREBASKET (defaults to face) 614 615 Notes: 616 The face based interpolation has 1 degree of freedom per face and ignores the 617 edge and vertex values completely in the coarse problem. For any seven point 618 stencil the interpolation of a constant on all faces into the interior is that constant. 619 620 The wirebasket interpolation has 1 degree of freedom per vertex, per edge and 621 per face. A constant on the subdomain boundary is interpolated as that constant 622 in the interior of the domain. 623 624 The coarse grid matrix is obtained via the Galerkin computation A_c = R A R^T, hence 625 if A is nonsingular A_c is also nonsingular. 626 627 Both interpolations are suitable for only scalar problems. 628 629 Level: intermediate 630 631 632 .seealso: PCEXOTIC, PCExoticType() 633 @*/ 634 PetscErrorCode PCExoticSetType(PC pc,PCExoticType type) 635 { 636 PetscErrorCode ierr; 637 638 PetscFunctionBegin; 639 PetscValidHeaderSpecific(pc,PC_CLASSID,1); 640 PetscValidLogicalCollectiveEnum(pc,type,2); 641 ierr = PetscTryMethod(pc,"PCExoticSetType_C",(PC,PCExoticType),(pc,type));CHKERRQ(ierr); 642 PetscFunctionReturn(0); 643 } 644 645 static PetscErrorCode PCExoticSetType_Exotic(PC pc,PCExoticType type) 646 { 647 PC_MG *mg = (PC_MG*)pc->data; 648 PC_Exotic *ctx = (PC_Exotic*) mg->innerctx; 649 650 PetscFunctionBegin; 651 ctx->type = type; 652 PetscFunctionReturn(0); 653 } 654 655 PetscErrorCode PCSetUp_Exotic(PC pc) 656 { 657 PetscErrorCode ierr; 658 Mat A; 659 PC_MG *mg = (PC_MG*)pc->data; 660 PC_Exotic *ex = (PC_Exotic*) mg->innerctx; 661 MatReuse reuse = (ex->P) ? MAT_REUSE_MATRIX : MAT_INITIAL_MATRIX; 662 663 PetscFunctionBegin; 664 if (!pc->dm) SETERRQ(PetscObjectComm((PetscObject)pc),PETSC_ERR_ARG_WRONGSTATE,"Need to call PCSetDM() before using this PC"); 665 ierr = PCGetOperators(pc,NULL,&A);CHKERRQ(ierr); 666 if (ex->type == PC_EXOTIC_FACE) { 667 ierr = DMDAGetFaceInterpolation(pc,pc->dm,ex,A,reuse,&ex->P);CHKERRQ(ierr); 668 } else if (ex->type == PC_EXOTIC_WIREBASKET) { 669 ierr = DMDAGetWireBasketInterpolation(pc,pc->dm,ex,A,reuse,&ex->P);CHKERRQ(ierr); 670 } else SETERRQ1(PetscObjectComm((PetscObject)pc),PETSC_ERR_PLIB,"Unknown exotic coarse space %d",ex->type); 671 ierr = PCMGSetInterpolation(pc,1,ex->P);CHKERRQ(ierr); 672 /* if PC has attached DM we must remove it or the PCMG will use it to compute incorrect sized vectors and interpolations */ 673 ierr = PCSetDM(pc,NULL);CHKERRQ(ierr); 674 ierr = PCSetUp_MG(pc);CHKERRQ(ierr); 675 PetscFunctionReturn(0); 676 } 677 678 PetscErrorCode PCDestroy_Exotic(PC pc) 679 { 680 PetscErrorCode ierr; 681 PC_MG *mg = (PC_MG*)pc->data; 682 PC_Exotic *ctx = (PC_Exotic*) mg->innerctx; 683 684 PetscFunctionBegin; 685 ierr = MatDestroy(&ctx->P);CHKERRQ(ierr); 686 ierr = KSPDestroy(&ctx->ksp);CHKERRQ(ierr); 687 ierr = PetscFree(ctx);CHKERRQ(ierr); 688 ierr = PCDestroy_MG(pc);CHKERRQ(ierr); 689 PetscFunctionReturn(0); 690 } 691 692 PetscErrorCode PCView_Exotic(PC pc,PetscViewer viewer) 693 { 694 PC_MG *mg = (PC_MG*)pc->data; 695 PetscErrorCode ierr; 696 PetscBool iascii; 697 PC_Exotic *ctx = (PC_Exotic*) mg->innerctx; 698 699 PetscFunctionBegin; 700 ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr); 701 if (iascii) { 702 ierr = PetscViewerASCIIPrintf(viewer," Exotic type = %s\n",PCExoticTypes[ctx->type]);CHKERRQ(ierr); 703 if (ctx->directSolve) { 704 ierr = PetscViewerASCIIPrintf(viewer," Using direct solver to construct interpolation\n");CHKERRQ(ierr); 705 } else { 706 PetscViewer sviewer; 707 PetscMPIInt rank; 708 709 ierr = PetscViewerASCIIPrintf(viewer," Using iterative solver to construct interpolation\n");CHKERRQ(ierr); 710 ierr = PetscViewerASCIIPushTab(viewer);CHKERRQ(ierr); 711 ierr = PetscViewerASCIIPushTab(viewer);CHKERRQ(ierr); /* should not need to push this twice? */ 712 ierr = PetscViewerGetSubViewer(viewer,PETSC_COMM_SELF,&sviewer);CHKERRQ(ierr); 713 ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)pc),&rank);CHKERRQ(ierr); 714 if (!rank) { 715 ierr = KSPView(ctx->ksp,sviewer);CHKERRQ(ierr); 716 } 717 ierr = PetscViewerRestoreSubViewer(viewer,PETSC_COMM_SELF,&sviewer);CHKERRQ(ierr); 718 ierr = PetscViewerASCIIPopTab(viewer);CHKERRQ(ierr); 719 ierr = PetscViewerASCIIPopTab(viewer);CHKERRQ(ierr); 720 } 721 } 722 ierr = PCView_MG(pc,viewer);CHKERRQ(ierr); 723 PetscFunctionReturn(0); 724 } 725 726 PetscErrorCode PCSetFromOptions_Exotic(PetscOptionItems *PetscOptionsObject,PC pc) 727 { 728 PetscErrorCode ierr; 729 PetscBool flg; 730 PC_MG *mg = (PC_MG*)pc->data; 731 PCExoticType mgctype; 732 PC_Exotic *ctx = (PC_Exotic*) mg->innerctx; 733 734 PetscFunctionBegin; 735 ierr = PetscOptionsHead(PetscOptionsObject,"Exotic coarse space options");CHKERRQ(ierr); 736 ierr = PetscOptionsEnum("-pc_exotic_type","face or wirebasket","PCExoticSetType",PCExoticTypes,(PetscEnum)ctx->type,(PetscEnum*)&mgctype,&flg);CHKERRQ(ierr); 737 if (flg) { 738 ierr = PCExoticSetType(pc,mgctype);CHKERRQ(ierr); 739 } 740 ierr = PetscOptionsBool("-pc_exotic_direct_solver","use direct solver to construct interpolation","None",ctx->directSolve,&ctx->directSolve,NULL);CHKERRQ(ierr); 741 if (!ctx->directSolve) { 742 if (!ctx->ksp) { 743 const char *prefix; 744 ierr = KSPCreate(PETSC_COMM_SELF,&ctx->ksp);CHKERRQ(ierr); 745 ierr = KSPSetErrorIfNotConverged(ctx->ksp,pc->erroriffailure);CHKERRQ(ierr); 746 ierr = PetscObjectIncrementTabLevel((PetscObject)ctx->ksp,(PetscObject)pc,1);CHKERRQ(ierr); 747 ierr = PetscLogObjectParent((PetscObject)pc,(PetscObject)ctx->ksp);CHKERRQ(ierr); 748 ierr = PCGetOptionsPrefix(pc,&prefix);CHKERRQ(ierr); 749 ierr = KSPSetOptionsPrefix(ctx->ksp,prefix);CHKERRQ(ierr); 750 ierr = KSPAppendOptionsPrefix(ctx->ksp,"exotic_");CHKERRQ(ierr); 751 } 752 ierr = KSPSetFromOptions(ctx->ksp);CHKERRQ(ierr); 753 } 754 ierr = PetscOptionsTail();CHKERRQ(ierr); 755 PetscFunctionReturn(0); 756 } 757 758 759 /*MC 760 PCEXOTIC - Two level overlapping Schwarz preconditioner with exotic (non-standard) coarse grid spaces 761 762 This uses the PCMG infrastructure restricted to two levels and the face and wirebasket based coarse 763 grid spaces. 764 765 Notes: 766 By default this uses GMRES on the fine grid smoother so this should be used with KSPFGMRES or the smoother changed to not use GMRES 767 768 References: 769 + 1. - These coarse grid spaces originate in the work of Bramble, Pasciak and Schatz, "The Construction 770 of Preconditioners for Elliptic Problems by Substructing IV", Mathematics of Computation, volume 53, 1989. 771 . 2. - They were generalized slightly in "Domain Decomposition Method for Linear Elasticity", Ph. D. thesis, Barry Smith, 772 New York University, 1990. 773 . 3. - They were then explored in great detail in Dryja, Smith, Widlund, "Schwarz Analysis 774 of Iterative Substructuring Methods for Elliptic Problems in Three Dimensions, SIAM Journal on Numerical 775 Analysis, volume 31. 1994. These were developed in the context of iterative substructuring preconditioners. 776 . 4. - They were then ingeniously applied as coarse grid spaces for overlapping Schwarz methods by Dohrmann and Widlund. 777 They refer to them as GDSW (generalized Dryja, Smith, Widlund preconditioners). See, for example, 778 Clark R. Dohrmann, Axel Klawonn, and Olof B. Widlund. Extending theory for domain decomposition algorithms to irregular subdomains. In Ulrich Langer, Marco 779 Discacciati, David Keyes, Olof Widlund, and Walter Zulehner, editors, Proceedings 780 of the 17th International Conference on Domain Decomposition Methods in 781 Science and Engineering, held in Strobl, Austria, 2006, number 60 in 782 Springer Verlag, Lecture Notes in Computational Science and Engineering, 2007. 783 . 5. - Clark R. Dohrmann, Axel Klawonn, and Olof B. Widlund. A family of energy minimizing coarse spaces for overlapping Schwarz preconditioners. In Ulrich Langer, 784 Marco Discacciati, David Keyes, Olof Widlund, and Walter Zulehner, editors, Proceedings 785 of the 17th International Conference on Domain Decomposition Methods 786 in Science and Engineering, held in Strobl, Austria, 2006, number 60 in 787 Springer Verlag, Lecture Notes in Computational Science and Engineering, 2007 788 . 6. - Clark R. Dohrmann, Axel Klawonn, and Olof B. Widlund. Domain decomposition 789 for less regular subdomains: Overlapping Schwarz in two dimensions. SIAM J. 790 Numer. Anal., 46(4), 2008. 791 - 7. - Clark R. Dohrmann and Olof B. Widlund. An overlapping Schwarz 792 algorithm for almost incompressible elasticity. Technical Report 793 TR2008 912, Department of Computer Science, Courant Institute 794 of Mathematical Sciences, New York University, May 2008. URL: 795 796 Options Database: The usual PCMG options are supported, such as -mg_levels_pc_type <type> -mg_coarse_pc_type <type> 797 -pc_mg_type <type> 798 799 Level: advanced 800 801 .seealso: PCMG, PCSetDM(), PCExoticType, PCExoticSetType() 802 M*/ 803 804 PETSC_EXTERN PetscErrorCode PCCreate_Exotic(PC pc) 805 { 806 PetscErrorCode ierr; 807 PC_Exotic *ex; 808 PC_MG *mg; 809 810 PetscFunctionBegin; 811 /* if type was previously mg; must manually destroy it because call to PCSetType(pc,PCMG) will not destroy it */ 812 if (pc->ops->destroy) { 813 ierr = (*pc->ops->destroy)(pc);CHKERRQ(ierr); 814 pc->data = NULL; 815 } 816 ierr = PetscFree(((PetscObject)pc)->type_name);CHKERRQ(ierr); 817 ((PetscObject)pc)->type_name = NULL; 818 819 ierr = PCSetType(pc,PCMG);CHKERRQ(ierr); 820 ierr = PCMGSetLevels(pc,2,NULL);CHKERRQ(ierr); 821 ierr = PCMGSetGalerkin(pc,PC_MG_GALERKIN_PMAT);CHKERRQ(ierr); 822 ierr = PetscNew(&ex);CHKERRQ(ierr); \ 823 ex->type = PC_EXOTIC_FACE; 824 mg = (PC_MG*) pc->data; 825 mg->innerctx = ex; 826 827 828 pc->ops->setfromoptions = PCSetFromOptions_Exotic; 829 pc->ops->view = PCView_Exotic; 830 pc->ops->destroy = PCDestroy_Exotic; 831 pc->ops->setup = PCSetUp_Exotic; 832 833 ierr = PetscObjectComposeFunction((PetscObject)pc,"PCExoticSetType_C",PCExoticSetType_Exotic);CHKERRQ(ierr); 834 PetscFunctionReturn(0); 835 } 836