1 #ifndef __MPIAIJ_H 2 #define __MPIAIJ_H 3 4 #include <../src/mat/impls/aij/seq/aij.h> 5 6 typedef struct { /* used by MatCreateMPIAIJSumSeqAIJ for reusing the merged matrix */ 7 PetscLayout rowmap; 8 PetscInt **buf_ri, **buf_rj; 9 PetscMPIInt *len_s, *len_r, *id_r; /* array of length of comm->size, store send/recv matrix values */ 10 PetscMPIInt nsend, nrecv; 11 PetscInt *bi, *bj; /* i and j array of the local portion of mpi C (matrix product) - rename to ci, cj! */ 12 PetscInt *owners_co, *coi, *coj; /* i and j array of (p->B)^T*A*P - used in the communication */ 13 } Mat_Merge_SeqsToMPI; 14 15 typedef struct { /* used by MatPtAPXXX_MPIAIJ_MPIAIJ() and MatMatMultXXX_MPIAIJ_MPIAIJ() */ 16 PetscInt *startsj_s, *startsj_r; /* used by MatGetBrowsOfAoCols_MPIAIJ */ 17 PetscScalar *bufa; /* used by MatGetBrowsOfAoCols_MPIAIJ */ 18 Mat P_loc, P_oth; /* partial B_seq -- intend to replace B_seq */ 19 PetscInt *api, *apj; /* symbolic i and j arrays of the local product A_loc*B_seq */ 20 PetscScalar *apv; 21 MatReuse reuse; /* flag to skip MatGetBrowsOfAoCols_MPIAIJ() and MatMPIAIJGetLocalMat() in 1st call of MatPtAPNumeric_MPIAIJ_MPIAIJ() */ 22 PetscScalar *apa; /* tmp array for store a row of A*P used in MatMatMult() */ 23 Mat A_loc; /* used by MatTransposeMatMult(), contains api and apj */ 24 ISLocalToGlobalMapping ltog; /* mapping from local column indices to global column indices for A_loc */ 25 Mat Pt; /* used by MatTransposeMatMult(), Pt = P^T */ 26 Mat Rd, Ro, AP_loc, C_loc, C_oth; 27 PetscInt algType; /* implementation algorithm */ 28 PetscSF sf; /* use it to communicate remote part of C */ 29 PetscInt *c_othi, *c_rmti; 30 31 Mat_Merge_SeqsToMPI *merge; 32 } Mat_APMPI; 33 34 typedef struct { 35 Mat A, B; /* local submatrices: A (diag part), 36 B (off-diag part) */ 37 PetscMPIInt size; /* size of communicator */ 38 PetscMPIInt rank; /* rank of proc in communicator */ 39 40 /* The following variables are used for matrix assembly */ 41 PetscBool donotstash; /* PETSC_TRUE if off processor entries dropped */ 42 MPI_Request *send_waits; /* array of send requests */ 43 MPI_Request *recv_waits; /* array of receive requests */ 44 PetscInt nsends, nrecvs; /* numbers of sends and receives */ 45 PetscScalar *svalues, *rvalues; /* sending and receiving data */ 46 PetscInt rmax; /* maximum message length */ 47 #if defined(PETSC_USE_CTABLE) 48 PetscHMapI colmap; 49 #else 50 PetscInt *colmap; /* local col number of off-diag col */ 51 #endif 52 PetscInt *garray; /* global index of all off-processor columns */ 53 54 /* The following variables are used for matrix-vector products */ 55 Vec lvec; /* local vector */ 56 Vec diag; 57 VecScatter Mvctx; /* scatter context for vector */ 58 PetscBool roworiented; /* if true, row-oriented input, default true */ 59 60 /* The following variables are for MatGetRow() */ 61 PetscInt *rowindices; /* column indices for row */ 62 PetscScalar *rowvalues; /* nonzero values in row */ 63 PetscBool getrowactive; /* indicates MatGetRow(), not restored */ 64 65 PetscInt *ld; /* number of entries per row left of diagonal block */ 66 67 /* Used by device classes */ 68 void *spptr; 69 70 struct _MatOps cops; 71 } Mat_MPIAIJ; 72 73 typedef struct { 74 PetscCount n; /* Number of COOs passed to MatSetPreallocationCOO)() */ 75 PetscSF sf; /* SF to send/recv remote values in MatSetValuesCOO() */ 76 PetscCount Annz, Bnnz; /* Number of entries in diagonal A and off-diagonal B */ 77 PetscCount Annz2, Bnnz2; /* Number of unique remote entries belonging to A and B */ 78 PetscCount Atot1, Atot2, Btot1, Btot2; /* Total local (tot1) and remote (tot2) entries (which might contain repeats) belonging to A and B */ 79 PetscCount *Ajmap1, *Aperm1; /* Lengths: [Annz+1], [Atot1]. Local entries to diag */ 80 PetscCount *Bjmap1, *Bperm1; /* Lengths: [Bnnz+1], [Btot1]. Local entries to offdiag */ 81 PetscCount *Aimap2, *Ajmap2, *Aperm2; /* Lengths: [Annz2], [Annz2+1], [Atot2]. Remote entries to diag */ 82 PetscCount *Bimap2, *Bjmap2, *Bperm2; /* Lengths: [Bnnz2], [Bnnz2+1], [Btot2]. Remote entries to offdiag */ 83 PetscCount *Cperm1; /* [sendlen] Permutation to fill MPI send buffer. 'C' for communication */ 84 PetscScalar *sendbuf, *recvbuf; /* Buffers for remote values in MatSetValuesCOO() */ 85 PetscInt sendlen, recvlen; /* Lengths (in unit of PetscScalar) of send/recvbuf */ 86 } MatCOOStruct_MPIAIJ; 87 88 PETSC_EXTERN PetscErrorCode MatCreate_MPIAIJ(Mat); 89 90 PETSC_INTERN PetscErrorCode MatAssemblyEnd_MPIAIJ(Mat, MatAssemblyType); 91 92 PETSC_INTERN PetscErrorCode MatSetUpMultiply_MPIAIJ(Mat); 93 PETSC_INTERN PetscErrorCode MatDisAssemble_MPIAIJ(Mat); 94 PETSC_INTERN PetscErrorCode MatDuplicate_MPIAIJ(Mat, MatDuplicateOption, Mat *); 95 PETSC_INTERN PetscErrorCode MatIncreaseOverlap_MPIAIJ(Mat, PetscInt, IS[], PetscInt); 96 PETSC_INTERN PetscErrorCode MatIncreaseOverlap_MPIAIJ_Scalable(Mat, PetscInt, IS[], PetscInt); 97 PETSC_INTERN PetscErrorCode MatFDColoringCreate_MPIXAIJ(Mat, ISColoring, MatFDColoring); 98 PETSC_INTERN PetscErrorCode MatFDColoringSetUp_MPIXAIJ(Mat, ISColoring, MatFDColoring); 99 PETSC_INTERN PetscErrorCode MatCreateSubMatrices_MPIAIJ(Mat, PetscInt, const IS[], const IS[], MatReuse, Mat *[]); 100 PETSC_INTERN PetscErrorCode MatCreateSubMatricesMPI_MPIAIJ(Mat, PetscInt, const IS[], const IS[], MatReuse, Mat *[]); 101 PETSC_INTERN PetscErrorCode MatCreateSubMatrix_MPIAIJ_All(Mat, MatCreateSubMatrixOption, MatReuse, Mat *[]); 102 PETSC_INTERN PetscErrorCode MatView_MPIAIJ(Mat, PetscViewer); 103 104 PETSC_INTERN PetscErrorCode MatCreateSubMatrix_MPIAIJ(Mat, IS, IS, MatReuse, Mat *); 105 PETSC_INTERN PetscErrorCode MatCreateSubMatrix_MPIAIJ_nonscalable(Mat, IS, IS, PetscInt, MatReuse, Mat *); 106 PETSC_INTERN PetscErrorCode MatCreateSubMatrix_MPIAIJ_SameRowDist(Mat, IS, IS, IS, MatReuse, Mat *); 107 PETSC_INTERN PetscErrorCode MatCreateSubMatrix_MPIAIJ_SameRowColDist(Mat, IS, IS, MatReuse, Mat *); 108 PETSC_INTERN PetscErrorCode MatGetMultiProcBlock_MPIAIJ(Mat, MPI_Comm, MatReuse, Mat *); 109 110 PETSC_INTERN PetscErrorCode MatLoad_MPIAIJ(Mat, PetscViewer); 111 PETSC_INTERN PetscErrorCode MatLoad_MPIAIJ_Binary(Mat, PetscViewer); 112 PETSC_INTERN PetscErrorCode MatCreateColmap_MPIAIJ_Private(Mat); 113 114 PETSC_INTERN PetscErrorCode MatProductSetFromOptions_MPIAIJ(Mat); 115 PETSC_INTERN PetscErrorCode MatProductSetFromOptions_MPIAIJBACKEND(Mat); 116 PETSC_INTERN PetscErrorCode MatProductSymbolic_MPIAIJBACKEND(Mat); 117 PETSC_INTERN PetscErrorCode MatProductSymbolic_AB_MPIAIJ_MPIAIJ(Mat); 118 119 PETSC_INTERN PetscErrorCode MatProductSymbolic_PtAP_MPIAIJ_MPIAIJ(Mat); 120 121 PETSC_INTERN PetscErrorCode MatProductSymbolic_RARt_MPIAIJ_MPIAIJ(Mat); 122 PETSC_INTERN PetscErrorCode MatProductNumeric_RARt_MPIAIJ_MPIAIJ(Mat); 123 124 PETSC_INTERN PetscErrorCode MatMatMultSymbolic_MPIAIJ_MPIAIJ_nonscalable(Mat, Mat, PetscReal, Mat); 125 PETSC_INTERN PetscErrorCode MatMatMultSymbolic_MPIAIJ_MPIAIJ_seqMPI(Mat, Mat, PetscReal, Mat); 126 PETSC_INTERN PetscErrorCode MatMatMultSymbolic_MPIAIJ_MPIAIJ(Mat, Mat, PetscReal, Mat); 127 PETSC_INTERN PetscErrorCode MatMatMultNumeric_MPIAIJ_MPIAIJ(Mat, Mat, Mat); 128 PETSC_INTERN PetscErrorCode MatMatMultNumeric_MPIAIJ_MPIAIJ_nonscalable(Mat, Mat, Mat); 129 130 PETSC_INTERN PetscErrorCode MatMatMatMultSymbolic_MPIAIJ_MPIAIJ_MPIAIJ(Mat, Mat, Mat, PetscReal, Mat); 131 PETSC_INTERN PetscErrorCode MatMatMatMultNumeric_MPIAIJ_MPIAIJ_MPIAIJ(Mat, Mat, Mat, Mat); 132 133 PETSC_INTERN PetscErrorCode MatPtAPSymbolic_MPIAIJ_MPIAIJ(Mat, Mat, PetscReal, Mat); 134 PETSC_INTERN PetscErrorCode MatPtAPNumeric_MPIAIJ_MPIAIJ(Mat, Mat, Mat); 135 136 PETSC_INTERN PetscErrorCode MatPtAPSymbolic_MPIAIJ_MPIAIJ_scalable(Mat, Mat, PetscReal, Mat); 137 PETSC_INTERN PetscErrorCode MatPtAPSymbolic_MPIAIJ_MPIAIJ_allatonce(Mat, Mat, PetscReal, Mat); 138 PETSC_INTERN PetscErrorCode MatPtAPSymbolic_MPIAIJ_MPIAIJ_allatonce_merged(Mat, Mat, PetscReal, Mat); 139 PETSC_INTERN PetscErrorCode MatPtAPNumeric_MPIAIJ_MPIAIJ_scalable(Mat, Mat, Mat); 140 PETSC_INTERN PetscErrorCode MatPtAPNumeric_MPIAIJ_MPIAIJ_allatonce(Mat, Mat, Mat); 141 PETSC_INTERN PetscErrorCode MatPtAPNumeric_MPIAIJ_MPIAIJ_allatonce_merged(Mat, Mat, Mat); 142 143 #if defined(PETSC_HAVE_HYPRE) 144 PETSC_INTERN PetscErrorCode MatPtAPSymbolic_AIJ_AIJ_wHYPRE(Mat, Mat, PetscReal, Mat); 145 #endif 146 PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIDense(Mat, MatType, MatReuse, Mat *); 147 #if defined(PETSC_HAVE_SCALAPACK) 148 PETSC_INTERN PetscErrorCode MatConvert_AIJ_ScaLAPACK(Mat, MatType, MatReuse, Mat *); 149 #endif 150 151 PETSC_INTERN PetscErrorCode MatDestroy_MPIAIJ(Mat); 152 PETSC_INTERN PetscErrorCode MatDestroy_MPIAIJ_PtAP(void *); 153 PETSC_INTERN PetscErrorCode MatDestroy_MPIAIJ_MatMatMult(void *); 154 155 PETSC_INTERN PetscErrorCode MatGetBrowsOfAoCols_MPIAIJ(Mat, Mat, MatReuse, PetscInt **, PetscInt **, MatScalar **, Mat *); 156 PETSC_INTERN PetscErrorCode MatSetValues_MPIAIJ(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], const PetscScalar[], InsertMode); 157 PETSC_INTERN PetscErrorCode MatSetValues_MPIAIJ_CopyFromCSRFormat(Mat, const PetscInt[], const PetscInt[], const PetscScalar[]); 158 PETSC_INTERN PetscErrorCode MatSetValues_MPIAIJ_CopyFromCSRFormat_Symbolic(Mat, const PetscInt[], const PetscInt[]); 159 PETSC_INTERN PetscErrorCode MatSetOption_MPIAIJ(Mat, MatOption, PetscBool); 160 161 PETSC_INTERN PetscErrorCode MatTransposeMatMultSymbolic_MPIAIJ_MPIAIJ_nonscalable(Mat, Mat, PetscReal, Mat); 162 PETSC_INTERN PetscErrorCode MatTransposeMatMultSymbolic_MPIAIJ_MPIAIJ(Mat, Mat, PetscReal, Mat); 163 PETSC_INTERN PetscErrorCode MatTransposeMatMultNumeric_MPIAIJ_MPIAIJ(Mat, Mat, Mat); 164 PETSC_INTERN PetscErrorCode MatTransposeMatMultNumeric_MPIAIJ_MPIAIJ_nonscalable(Mat, Mat, Mat); 165 PETSC_INTERN PetscErrorCode MatTransposeMatMultNumeric_MPIAIJ_MPIAIJ_matmatmult(Mat, Mat, Mat); 166 PETSC_INTERN PetscErrorCode MatTransposeMatMultSymbolic_MPIAIJ_MPIDense(Mat, Mat, PetscReal, Mat); 167 PETSC_INTERN PetscErrorCode MatGetSeqNonzeroStructure_MPIAIJ(Mat, Mat *); 168 169 PETSC_INTERN PetscErrorCode MatSetFromOptions_MPIAIJ(Mat, PetscOptionItems *); 170 PETSC_INTERN PetscErrorCode MatMPIAIJSetPreallocation_MPIAIJ(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[]); 171 172 #if !defined(PETSC_USE_COMPLEX) && !defined(PETSC_USE_REAL_SINGLE) && !defined(PETSC_USE_REAL___FLOAT128) && !defined(PETSC_USE_REAL___FP16) 173 PETSC_INTERN PetscErrorCode MatLUFactorSymbolic_MPIAIJ_TFS(Mat, IS, IS, const MatFactorInfo *, Mat *); 174 #endif 175 PETSC_INTERN PetscErrorCode MatSolve_MPIAIJ(Mat, Vec, Vec); 176 PETSC_INTERN PetscErrorCode MatILUFactor_MPIAIJ(Mat, IS, IS, const MatFactorInfo *); 177 178 PETSC_INTERN PetscErrorCode MatAXPYGetPreallocation_MPIX_private(PetscInt, const PetscInt *, const PetscInt *, const PetscInt *, const PetscInt *, const PetscInt *, const PetscInt *, PetscInt *); 179 180 extern PetscErrorCode MatGetDiagonalBlock_MPIAIJ(Mat, Mat *); 181 extern PetscErrorCode MatDiagonalScaleLocal_MPIAIJ(Mat, Vec); 182 183 PETSC_INTERN PetscErrorCode MatGetSeqMats_MPIAIJ(Mat, Mat *, Mat *); 184 PETSC_INTERN PetscErrorCode MatSetSeqMats_MPIAIJ(Mat, IS, IS, IS, MatStructure, Mat, Mat); 185 186 PETSC_INTERN PetscErrorCode MatSetPreallocationCOO_MPIAIJ(Mat, PetscCount, PetscInt[], PetscInt[]); 187 PETSC_INTERN PetscErrorCode MatResetPreallocationCOO_MPIAIJ(Mat); 188 189 /* compute apa = A[i,:]*P = Ad[i,:]*P_loc + Ao*[i,:]*P_oth using sparse axpy */ 190 #define AProw_scalable(i, ad, ao, p_loc, p_oth, api, apj, apa) \ 191 { \ 192 PetscInt _anz, _pnz, _j, _k, *_ai, *_aj, _row, *_pi, *_pj, _nextp, *_apJ; \ 193 PetscScalar *_aa, _valtmp, *_pa; \ 194 _apJ = apj + api[i]; \ 195 /* diagonal portion of A */ \ 196 _ai = ad->i; \ 197 _anz = _ai[i + 1] - _ai[i]; \ 198 _aj = ad->j + _ai[i]; \ 199 _aa = ad->a + _ai[i]; \ 200 for (_j = 0; _j < _anz; _j++) { \ 201 _row = _aj[_j]; \ 202 _pi = p_loc->i; \ 203 _pnz = _pi[_row + 1] - _pi[_row]; \ 204 _pj = p_loc->j + _pi[_row]; \ 205 _pa = p_loc->a + _pi[_row]; \ 206 /* perform sparse axpy */ \ 207 _valtmp = _aa[_j]; \ 208 _nextp = 0; \ 209 for (_k = 0; _nextp < _pnz; _k++) { \ 210 if (_apJ[_k] == _pj[_nextp]) { /* column of AP == column of P */ \ 211 apa[_k] += _valtmp * _pa[_nextp++]; \ 212 } \ 213 } \ 214 (void)PetscLogFlops(2.0 * _pnz); \ 215 } \ 216 /* off-diagonal portion of A */ \ 217 if (p_oth) { \ 218 _ai = ao->i; \ 219 _anz = _ai[i + 1] - _ai[i]; \ 220 _aj = ao->j + _ai[i]; \ 221 _aa = ao->a + _ai[i]; \ 222 for (_j = 0; _j < _anz; _j++) { \ 223 _row = _aj[_j]; \ 224 _pi = p_oth->i; \ 225 _pnz = _pi[_row + 1] - _pi[_row]; \ 226 _pj = p_oth->j + _pi[_row]; \ 227 _pa = p_oth->a + _pi[_row]; \ 228 /* perform sparse axpy */ \ 229 _valtmp = _aa[_j]; \ 230 _nextp = 0; \ 231 for (_k = 0; _nextp < _pnz; _k++) { \ 232 if (_apJ[_k] == _pj[_nextp]) { /* column of AP == column of P */ \ 233 apa[_k] += _valtmp * _pa[_nextp++]; \ 234 } \ 235 } \ 236 (void)PetscLogFlops(2.0 * _pnz); \ 237 } \ 238 } \ 239 } 240 241 #define AProw_nonscalable(i, ad, ao, p_loc, p_oth, apa) \ 242 { \ 243 PetscInt _anz, _pnz, _j, _k, *_ai, *_aj, _row, *_pi, *_pj; \ 244 PetscScalar *_aa, _valtmp, *_pa; \ 245 /* diagonal portion of A */ \ 246 _ai = ad->i; \ 247 _anz = _ai[i + 1] - _ai[i]; \ 248 _aj = ad->j + _ai[i]; \ 249 _aa = ad->a + _ai[i]; \ 250 for (_j = 0; _j < _anz; _j++) { \ 251 _row = _aj[_j]; \ 252 _pi = p_loc->i; \ 253 _pnz = _pi[_row + 1] - _pi[_row]; \ 254 _pj = p_loc->j + _pi[_row]; \ 255 _pa = p_loc->a + _pi[_row]; \ 256 /* perform dense axpy */ \ 257 _valtmp = _aa[_j]; \ 258 for (_k = 0; _k < _pnz; _k++) apa[_pj[_k]] += _valtmp * _pa[_k]; \ 259 (void)PetscLogFlops(2.0 * _pnz); \ 260 } \ 261 /* off-diagonal portion of A */ \ 262 if (p_oth) { \ 263 _ai = ao->i; \ 264 _anz = _ai[i + 1] - _ai[i]; \ 265 _aj = ao->j + _ai[i]; \ 266 _aa = ao->a + _ai[i]; \ 267 for (_j = 0; _j < _anz; _j++) { \ 268 _row = _aj[_j]; \ 269 _pi = p_oth->i; \ 270 _pnz = _pi[_row + 1] - _pi[_row]; \ 271 _pj = p_oth->j + _pi[_row]; \ 272 _pa = p_oth->a + _pi[_row]; \ 273 /* perform dense axpy */ \ 274 _valtmp = _aa[_j]; \ 275 for (_k = 0; _k < _pnz; _k++) apa[_pj[_k]] += _valtmp * _pa[_k]; \ 276 (void)PetscLogFlops(2.0 * _pnz); \ 277 } \ 278 } \ 279 } 280 281 #endif 282