1dced61a5SBarry Smith #define PETSC_SKIP_SPINLOCK 253800007SKarl Rupp #define PETSC_SKIP_CXX_COMPLEX_FIX 399acd6aaSStefano Zampini #define PETSC_SKIP_IMMINTRIN_H_CUDAWORKAROUND 1 40fd2b57fSKarl Rupp 53d13b8fdSMatthew G. Knepley #include <petscconf.h> 69ae82921SPaul Mullowney #include <../src/mat/impls/aij/mpi/mpiaij.h> /*I "petscmat.h" I*/ 757d48284SJunchao Zhang #include <../src/mat/impls/aij/seq/seqcusparse/cusparsematimpl.h> 83d13b8fdSMatthew G. Knepley #include <../src/mat/impls/aij/mpi/mpicusparse/mpicusparsematimpl.h> 97e8381f9SStefano Zampini #include <thrust/advance.h> 10*4eb5378fSStefano Zampini #include <petscsf.h> 117e8381f9SStefano Zampini 127e8381f9SStefano Zampini struct VecCUDAEquals 137e8381f9SStefano Zampini { 147e8381f9SStefano Zampini template <typename Tuple> 157e8381f9SStefano Zampini __host__ __device__ 167e8381f9SStefano Zampini void operator()(Tuple t) 177e8381f9SStefano Zampini { 187e8381f9SStefano Zampini thrust::get<1>(t) = thrust::get<0>(t); 197e8381f9SStefano Zampini } 207e8381f9SStefano Zampini }; 217e8381f9SStefano Zampini 227e8381f9SStefano Zampini static PetscErrorCode MatSetValuesCOO_MPIAIJCUSPARSE(Mat A, const PetscScalar v[], InsertMode imode) 237e8381f9SStefano Zampini { 247e8381f9SStefano Zampini Mat_MPIAIJ *a = (Mat_MPIAIJ*)A->data; 257e8381f9SStefano Zampini Mat_MPIAIJCUSPARSE *cusp = (Mat_MPIAIJCUSPARSE*)a->spptr; 267e8381f9SStefano Zampini PetscInt n = cusp->coo_nd + cusp->coo_no; 277e8381f9SStefano Zampini PetscErrorCode ierr; 287e8381f9SStefano Zampini cudaError_t cerr; 297e8381f9SStefano Zampini 307e8381f9SStefano Zampini PetscFunctionBegin; 317e8381f9SStefano Zampini ierr = PetscLogEventBegin(MAT_CUSPARSESetVCOO,A,0,0,0);CHKERRQ(ierr); 32e61fc153SStefano Zampini if (cusp->coo_p && v) { 3308391a17SStefano Zampini thrust::device_ptr<const PetscScalar> d_v; 3408391a17SStefano Zampini THRUSTARRAY *w = NULL; 3508391a17SStefano Zampini 3608391a17SStefano Zampini if (isCudaMem(v)) { 3708391a17SStefano Zampini d_v = thrust::device_pointer_cast(v); 3808391a17SStefano Zampini } else { 39e61fc153SStefano Zampini w = new THRUSTARRAY(n); 40e61fc153SStefano Zampini w->assign(v,v+n); 4108391a17SStefano Zampini ierr = PetscLogCpuToGpu(n*sizeof(PetscScalar));CHKERRQ(ierr); 4208391a17SStefano Zampini d_v = w->data(); 4308391a17SStefano Zampini } 4408391a17SStefano Zampini 4508391a17SStefano Zampini auto zibit = thrust::make_zip_iterator(thrust::make_tuple(thrust::make_permutation_iterator(d_v,cusp->coo_p->begin()), 467e8381f9SStefano Zampini cusp->coo_pw->begin())); 4708391a17SStefano Zampini auto zieit = thrust::make_zip_iterator(thrust::make_tuple(thrust::make_permutation_iterator(d_v,cusp->coo_p->end()), 487e8381f9SStefano Zampini cusp->coo_pw->end())); 4908391a17SStefano Zampini ierr = PetscLogGpuTimeBegin();CHKERRQ(ierr); 507e8381f9SStefano Zampini thrust::for_each(zibit,zieit,VecCUDAEquals()); 5108391a17SStefano Zampini cerr = WaitForCUDA();CHKERRCUDA(cerr); 5208391a17SStefano Zampini ierr = PetscLogGpuTimeEnd();CHKERRQ(ierr); 53e61fc153SStefano Zampini delete w; 547e8381f9SStefano Zampini ierr = MatSetValuesCOO_SeqAIJCUSPARSE(a->A,cusp->coo_pw->data().get(),imode);CHKERRQ(ierr); 557e8381f9SStefano Zampini ierr = MatSetValuesCOO_SeqAIJCUSPARSE(a->B,cusp->coo_pw->data().get()+cusp->coo_nd,imode);CHKERRQ(ierr); 567e8381f9SStefano Zampini } else { 577e8381f9SStefano Zampini ierr = MatSetValuesCOO_SeqAIJCUSPARSE(a->A,v,imode);CHKERRQ(ierr); 587e8381f9SStefano Zampini ierr = MatSetValuesCOO_SeqAIJCUSPARSE(a->B,v ? v+cusp->coo_nd : NULL,imode);CHKERRQ(ierr); 597e8381f9SStefano Zampini } 607e8381f9SStefano Zampini ierr = PetscLogEventEnd(MAT_CUSPARSESetVCOO,A,0,0,0);CHKERRQ(ierr); 617e8381f9SStefano Zampini ierr = PetscObjectStateIncrease((PetscObject)A);CHKERRQ(ierr); 627e8381f9SStefano Zampini A->num_ass++; 637e8381f9SStefano Zampini A->assembled = PETSC_TRUE; 647e8381f9SStefano Zampini A->ass_nonzerostate = A->nonzerostate; 65*4eb5378fSStefano Zampini A->offloadmask = PETSC_OFFLOAD_GPU; 667e8381f9SStefano Zampini PetscFunctionReturn(0); 677e8381f9SStefano Zampini } 687e8381f9SStefano Zampini 697e8381f9SStefano Zampini template <typename Tuple> 707e8381f9SStefano Zampini struct IsNotOffDiagT 717e8381f9SStefano Zampini { 727e8381f9SStefano Zampini PetscInt _cstart,_cend; 737e8381f9SStefano Zampini 747e8381f9SStefano Zampini IsNotOffDiagT(PetscInt cstart, PetscInt cend) : _cstart(cstart), _cend(cend) {} 757e8381f9SStefano Zampini __host__ __device__ 767e8381f9SStefano Zampini inline bool operator()(Tuple t) 777e8381f9SStefano Zampini { 787e8381f9SStefano Zampini return !(thrust::get<1>(t) < _cstart || thrust::get<1>(t) >= _cend); 797e8381f9SStefano Zampini } 807e8381f9SStefano Zampini }; 817e8381f9SStefano Zampini 827e8381f9SStefano Zampini struct IsOffDiag 837e8381f9SStefano Zampini { 847e8381f9SStefano Zampini PetscInt _cstart,_cend; 857e8381f9SStefano Zampini 867e8381f9SStefano Zampini IsOffDiag(PetscInt cstart, PetscInt cend) : _cstart(cstart), _cend(cend) {} 877e8381f9SStefano Zampini __host__ __device__ 887e8381f9SStefano Zampini inline bool operator() (const PetscInt &c) 897e8381f9SStefano Zampini { 907e8381f9SStefano Zampini return c < _cstart || c >= _cend; 917e8381f9SStefano Zampini } 927e8381f9SStefano Zampini }; 937e8381f9SStefano Zampini 947e8381f9SStefano Zampini struct GlobToLoc 957e8381f9SStefano Zampini { 967e8381f9SStefano Zampini PetscInt _start; 977e8381f9SStefano Zampini 987e8381f9SStefano Zampini GlobToLoc(PetscInt start) : _start(start) {} 997e8381f9SStefano Zampini __host__ __device__ 1007e8381f9SStefano Zampini inline PetscInt operator() (const PetscInt &c) 1017e8381f9SStefano Zampini { 1027e8381f9SStefano Zampini return c - _start; 1037e8381f9SStefano Zampini } 1047e8381f9SStefano Zampini }; 1057e8381f9SStefano Zampini 1067e8381f9SStefano Zampini static PetscErrorCode MatSetPreallocationCOO_MPIAIJCUSPARSE(Mat B, PetscInt n, const PetscInt coo_i[], const PetscInt coo_j[]) 1077e8381f9SStefano Zampini { 1087e8381f9SStefano Zampini Mat_MPIAIJ *b = (Mat_MPIAIJ*)B->data; 1097e8381f9SStefano Zampini Mat_MPIAIJCUSPARSE *cusp = (Mat_MPIAIJCUSPARSE*)b->spptr; 1107e8381f9SStefano Zampini PetscErrorCode ierr; 1117e8381f9SStefano Zampini PetscInt *jj; 1127e8381f9SStefano Zampini size_t noff = 0; 1137e8381f9SStefano Zampini THRUSTINTARRAY d_i(n); 1147e8381f9SStefano Zampini THRUSTINTARRAY d_j(n); 1157e8381f9SStefano Zampini ISLocalToGlobalMapping l2g; 1167e8381f9SStefano Zampini cudaError_t cerr; 1177e8381f9SStefano Zampini 1187e8381f9SStefano Zampini PetscFunctionBegin; 1197e8381f9SStefano Zampini ierr = PetscLogEventBegin(MAT_CUSPARSEPreallCOO,B,0,0,0);CHKERRQ(ierr); 1207e8381f9SStefano Zampini ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr); 1217e8381f9SStefano Zampini ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr); 1227e8381f9SStefano Zampini if (b->A) { ierr = MatCUSPARSEClearHandle(b->A);CHKERRQ(ierr); } 1237e8381f9SStefano Zampini if (b->B) { ierr = MatCUSPARSEClearHandle(b->B);CHKERRQ(ierr); } 1247e8381f9SStefano Zampini ierr = PetscFree(b->garray);CHKERRQ(ierr); 1257e8381f9SStefano Zampini ierr = VecDestroy(&b->lvec);CHKERRQ(ierr); 1267e8381f9SStefano Zampini ierr = MatDestroy(&b->A);CHKERRQ(ierr); 1277e8381f9SStefano Zampini ierr = MatDestroy(&b->B);CHKERRQ(ierr); 1287e8381f9SStefano Zampini 1297e8381f9SStefano Zampini ierr = PetscLogCpuToGpu(2.*n*sizeof(PetscInt));CHKERRQ(ierr); 1307e8381f9SStefano Zampini d_i.assign(coo_i,coo_i+n); 1317e8381f9SStefano Zampini d_j.assign(coo_j,coo_j+n); 1327e8381f9SStefano Zampini delete cusp->coo_p; 1337e8381f9SStefano Zampini delete cusp->coo_pw; 1347e8381f9SStefano Zampini cusp->coo_p = NULL; 1357e8381f9SStefano Zampini cusp->coo_pw = NULL; 13608391a17SStefano Zampini ierr = PetscLogGpuTimeBegin();CHKERRQ(ierr); 1377e8381f9SStefano Zampini auto firstoffd = thrust::find_if(thrust::device,d_j.begin(),d_j.end(),IsOffDiag(B->cmap->rstart,B->cmap->rend)); 1387e8381f9SStefano Zampini auto firstdiag = thrust::find_if_not(thrust::device,firstoffd,d_j.end(),IsOffDiag(B->cmap->rstart,B->cmap->rend)); 1397e8381f9SStefano Zampini if (firstoffd != d_j.end() && firstdiag != d_j.end()) { 1407e8381f9SStefano Zampini cusp->coo_p = new THRUSTINTARRAY(n); 1417e8381f9SStefano Zampini cusp->coo_pw = new THRUSTARRAY(n); 1427e8381f9SStefano Zampini thrust::sequence(thrust::device,cusp->coo_p->begin(),cusp->coo_p->end(),0); 1437e8381f9SStefano Zampini auto fzipp = thrust::make_zip_iterator(thrust::make_tuple(d_i.begin(),d_j.begin(),cusp->coo_p->begin())); 1447e8381f9SStefano Zampini auto ezipp = thrust::make_zip_iterator(thrust::make_tuple(d_i.end(),d_j.end(),cusp->coo_p->end())); 1457e8381f9SStefano Zampini auto mzipp = thrust::partition(thrust::device,fzipp,ezipp,IsNotOffDiagT<thrust::tuple<PetscInt,PetscInt,PetscInt> >(B->cmap->rstart,B->cmap->rend)); 1467e8381f9SStefano Zampini firstoffd = mzipp.get_iterator_tuple().get<1>(); 1477e8381f9SStefano Zampini } 1487e8381f9SStefano Zampini cusp->coo_nd = thrust::distance(d_j.begin(),firstoffd); 1497e8381f9SStefano Zampini cusp->coo_no = thrust::distance(firstoffd,d_j.end()); 1507e8381f9SStefano Zampini 1517e8381f9SStefano Zampini /* from global to local */ 1527e8381f9SStefano Zampini thrust::transform(thrust::device,d_i.begin(),d_i.end(),d_i.begin(),GlobToLoc(B->rmap->rstart)); 1537e8381f9SStefano Zampini thrust::transform(thrust::device,d_j.begin(),firstoffd,d_j.begin(),GlobToLoc(B->cmap->rstart)); 15408391a17SStefano Zampini cerr = WaitForCUDA();CHKERRCUDA(cerr); 15508391a17SStefano Zampini ierr = PetscLogGpuTimeEnd();CHKERRQ(ierr); 1567e8381f9SStefano Zampini 1577e8381f9SStefano Zampini /* copy offdiag column indices to map on the CPU */ 1587e8381f9SStefano Zampini ierr = PetscMalloc1(cusp->coo_no,&jj);CHKERRQ(ierr); 1597e8381f9SStefano Zampini cerr = cudaMemcpy(jj,d_j.data().get()+cusp->coo_nd,cusp->coo_no*sizeof(PetscInt),cudaMemcpyDeviceToHost);CHKERRCUDA(cerr); 1607e8381f9SStefano Zampini auto o_j = d_j.begin(); 16108391a17SStefano Zampini ierr = PetscLogGpuTimeBegin();CHKERRQ(ierr); 1627e8381f9SStefano Zampini thrust::advance(o_j,cusp->coo_nd); 1637e8381f9SStefano Zampini thrust::sort(thrust::device,o_j,d_j.end()); 1647e8381f9SStefano Zampini auto wit = thrust::unique(thrust::device,o_j,d_j.end()); 16508391a17SStefano Zampini cerr = WaitForCUDA();CHKERRCUDA(cerr); 16608391a17SStefano Zampini ierr = PetscLogGpuTimeEnd();CHKERRQ(ierr); 1677e8381f9SStefano Zampini noff = thrust::distance(o_j,wit); 1687e8381f9SStefano Zampini ierr = PetscMalloc1(noff+1,&b->garray);CHKERRQ(ierr); 1697e8381f9SStefano Zampini cerr = cudaMemcpy(b->garray,d_j.data().get()+cusp->coo_nd,noff*sizeof(PetscInt),cudaMemcpyDeviceToHost);CHKERRCUDA(cerr); 1707e8381f9SStefano Zampini ierr = PetscLogGpuToCpu((noff+cusp->coo_no)*sizeof(PetscInt));CHKERRQ(ierr); 1717e8381f9SStefano Zampini ierr = ISLocalToGlobalMappingCreate(PETSC_COMM_SELF,1,noff,b->garray,PETSC_COPY_VALUES,&l2g);CHKERRQ(ierr); 1727e8381f9SStefano Zampini ierr = ISLocalToGlobalMappingSetType(l2g,ISLOCALTOGLOBALMAPPINGHASH);CHKERRQ(ierr); 1737e8381f9SStefano Zampini ierr = ISGlobalToLocalMappingApply(l2g,IS_GTOLM_DROP,cusp->coo_no,jj,&n,jj);CHKERRQ(ierr); 1747e8381f9SStefano Zampini if (n != cusp->coo_no) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Unexpected is size %D != %D coo size",n,cusp->coo_no); 1757e8381f9SStefano Zampini ierr = ISLocalToGlobalMappingDestroy(&l2g);CHKERRQ(ierr); 1767e8381f9SStefano Zampini 1777e8381f9SStefano Zampini ierr = MatCreate(PETSC_COMM_SELF,&b->A);CHKERRQ(ierr); 1787e8381f9SStefano Zampini ierr = MatSetSizes(b->A,B->rmap->n,B->cmap->n,B->rmap->n,B->cmap->n);CHKERRQ(ierr); 1797e8381f9SStefano Zampini ierr = MatSetType(b->A,MATSEQAIJCUSPARSE);CHKERRQ(ierr); 1807e8381f9SStefano Zampini ierr = PetscLogObjectParent((PetscObject)B,(PetscObject)b->A);CHKERRQ(ierr); 1817e8381f9SStefano Zampini ierr = MatCreate(PETSC_COMM_SELF,&b->B);CHKERRQ(ierr); 1827e8381f9SStefano Zampini ierr = MatSetSizes(b->B,B->rmap->n,noff,B->rmap->n,noff);CHKERRQ(ierr); 1837e8381f9SStefano Zampini ierr = MatSetType(b->B,MATSEQAIJCUSPARSE);CHKERRQ(ierr); 1847e8381f9SStefano Zampini ierr = PetscLogObjectParent((PetscObject)B,(PetscObject)b->B);CHKERRQ(ierr); 1857e8381f9SStefano Zampini 1867e8381f9SStefano Zampini /* GPU memory, cusparse specific call handles it internally */ 1877e8381f9SStefano Zampini ierr = MatSetPreallocationCOO_SeqAIJCUSPARSE(b->A,cusp->coo_nd,d_i.data().get(),d_j.data().get());CHKERRQ(ierr); 1887e8381f9SStefano Zampini ierr = MatSetPreallocationCOO_SeqAIJCUSPARSE(b->B,cusp->coo_no,d_i.data().get()+cusp->coo_nd,jj);CHKERRQ(ierr); 1897e8381f9SStefano Zampini ierr = PetscFree(jj);CHKERRQ(ierr); 1907e8381f9SStefano Zampini 1917e8381f9SStefano Zampini ierr = MatCUSPARSESetFormat(b->A,MAT_CUSPARSE_MULT,cusp->diagGPUMatFormat);CHKERRQ(ierr); 1927e8381f9SStefano Zampini ierr = MatCUSPARSESetFormat(b->B,MAT_CUSPARSE_MULT,cusp->offdiagGPUMatFormat);CHKERRQ(ierr); 1937e8381f9SStefano Zampini ierr = MatCUSPARSESetHandle(b->A,cusp->handle);CHKERRQ(ierr); 1947e8381f9SStefano Zampini ierr = MatCUSPARSESetHandle(b->B,cusp->handle);CHKERRQ(ierr); 1957e8381f9SStefano Zampini ierr = MatCUSPARSESetStream(b->A,cusp->stream);CHKERRQ(ierr); 1967e8381f9SStefano Zampini ierr = MatCUSPARSESetStream(b->B,cusp->stream);CHKERRQ(ierr); 1977e8381f9SStefano Zampini ierr = MatSetUpMultiply_MPIAIJ(B);CHKERRQ(ierr); 1987e8381f9SStefano Zampini B->preallocated = PETSC_TRUE; 1997e8381f9SStefano Zampini B->nonzerostate++; 2007e8381f9SStefano Zampini ierr = PetscLogEventEnd(MAT_CUSPARSEPreallCOO,B,0,0,0);CHKERRQ(ierr); 2017e8381f9SStefano Zampini 2027e8381f9SStefano Zampini ierr = MatBindToCPU(b->A,B->boundtocpu);CHKERRQ(ierr); 2037e8381f9SStefano Zampini ierr = MatBindToCPU(b->B,B->boundtocpu);CHKERRQ(ierr); 2047e8381f9SStefano Zampini B->offloadmask = PETSC_OFFLOAD_CPU; 2057e8381f9SStefano Zampini B->assembled = PETSC_FALSE; 2067e8381f9SStefano Zampini B->was_assembled = PETSC_FALSE; 2077e8381f9SStefano Zampini PetscFunctionReturn(0); 2087e8381f9SStefano Zampini } 2099ae82921SPaul Mullowney 210ed502f03SStefano Zampini static PetscErrorCode MatMPIAIJGetLocalMatMerge_MPIAIJCUSPARSE(Mat A,MatReuse scall,IS *glob,Mat *A_loc) 211ed502f03SStefano Zampini { 212ed502f03SStefano Zampini Mat Ad,Ao; 213ed502f03SStefano Zampini const PetscInt *cmap; 214ed502f03SStefano Zampini PetscErrorCode ierr; 215ed502f03SStefano Zampini 216ed502f03SStefano Zampini PetscFunctionBegin; 217ed502f03SStefano Zampini ierr = MatMPIAIJGetSeqAIJ(A,&Ad,&Ao,&cmap);CHKERRQ(ierr); 218ed502f03SStefano Zampini ierr = MatSeqAIJCUSPARSEMergeMats(Ad,Ao,scall,A_loc);CHKERRQ(ierr); 219ed502f03SStefano Zampini if (glob) { 220ed502f03SStefano Zampini PetscInt cst, i, dn, on, *gidx; 221ed502f03SStefano Zampini 222ed502f03SStefano Zampini ierr = MatGetLocalSize(Ad,NULL,&dn);CHKERRQ(ierr); 223ed502f03SStefano Zampini ierr = MatGetLocalSize(Ao,NULL,&on);CHKERRQ(ierr); 224ed502f03SStefano Zampini ierr = MatGetOwnershipRangeColumn(A,&cst,NULL);CHKERRQ(ierr); 225ed502f03SStefano Zampini ierr = PetscMalloc1(dn+on,&gidx);CHKERRQ(ierr); 226ed502f03SStefano Zampini for (i=0; i<dn; i++) gidx[i] = cst + i; 227ed502f03SStefano Zampini for (i=0; i<on; i++) gidx[i+dn] = cmap[i]; 228ed502f03SStefano Zampini ierr = ISCreateGeneral(PetscObjectComm((PetscObject)Ad),dn+on,gidx,PETSC_OWN_POINTER,glob);CHKERRQ(ierr); 229ed502f03SStefano Zampini } 230ed502f03SStefano Zampini PetscFunctionReturn(0); 231ed502f03SStefano Zampini } 232ed502f03SStefano Zampini 2339ae82921SPaul Mullowney PetscErrorCode MatMPIAIJSetPreallocation_MPIAIJCUSPARSE(Mat B,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[]) 2349ae82921SPaul Mullowney { 235bbf3fe20SPaul Mullowney Mat_MPIAIJ *b = (Mat_MPIAIJ*)B->data; 236bbf3fe20SPaul Mullowney Mat_MPIAIJCUSPARSE *cusparseStruct = (Mat_MPIAIJCUSPARSE*)b->spptr; 2379ae82921SPaul Mullowney PetscErrorCode ierr; 2389ae82921SPaul Mullowney PetscInt i; 2399ae82921SPaul Mullowney 2409ae82921SPaul Mullowney PetscFunctionBegin; 2419ae82921SPaul Mullowney ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr); 2429ae82921SPaul Mullowney ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr); 2437e8381f9SStefano Zampini if (PetscDefined(USE_DEBUG) && d_nnz) { 2449ae82921SPaul Mullowney for (i=0; i<B->rmap->n; i++) { 2459ae82921SPaul Mullowney if (d_nnz[i] < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"d_nnz cannot be less than 0: local row %D value %D",i,d_nnz[i]); 2469ae82921SPaul Mullowney } 2479ae82921SPaul Mullowney } 2487e8381f9SStefano Zampini if (PetscDefined(USE_DEBUG) && o_nnz) { 2499ae82921SPaul Mullowney for (i=0; i<B->rmap->n; i++) { 2509ae82921SPaul Mullowney if (o_nnz[i] < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"o_nnz cannot be less than 0: local row %D value %D",i,o_nnz[i]); 2519ae82921SPaul Mullowney } 2529ae82921SPaul Mullowney } 2539ae82921SPaul Mullowney if (!B->preallocated) { 254bbf3fe20SPaul Mullowney /* Explicitly create 2 MATSEQAIJCUSPARSE matrices. */ 2559ae82921SPaul Mullowney ierr = MatCreate(PETSC_COMM_SELF,&b->A);CHKERRQ(ierr); 256b470e4b4SRichard Tran Mills ierr = MatBindToCPU(b->A,B->boundtocpu);CHKERRQ(ierr); 2579ae82921SPaul Mullowney ierr = MatSetSizes(b->A,B->rmap->n,B->cmap->n,B->rmap->n,B->cmap->n);CHKERRQ(ierr); 2583bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)B,(PetscObject)b->A);CHKERRQ(ierr); 2599ae82921SPaul Mullowney ierr = MatCreate(PETSC_COMM_SELF,&b->B);CHKERRQ(ierr); 260b470e4b4SRichard Tran Mills ierr = MatBindToCPU(b->B,B->boundtocpu);CHKERRQ(ierr); 2619ae82921SPaul Mullowney ierr = MatSetSizes(b->B,B->rmap->n,B->cmap->N,B->rmap->n,B->cmap->N);CHKERRQ(ierr); 2623bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)B,(PetscObject)b->B);CHKERRQ(ierr); 2639ae82921SPaul Mullowney } 264d98d7c49SStefano Zampini ierr = MatSetType(b->A,MATSEQAIJCUSPARSE);CHKERRQ(ierr); 265d98d7c49SStefano Zampini ierr = MatSetType(b->B,MATSEQAIJCUSPARSE);CHKERRQ(ierr); 266d98d7c49SStefano Zampini if (b->lvec) { 267d98d7c49SStefano Zampini ierr = VecSetType(b->lvec,VECSEQCUDA);CHKERRQ(ierr); 268d98d7c49SStefano Zampini } 2699ae82921SPaul Mullowney ierr = MatSeqAIJSetPreallocation(b->A,d_nz,d_nnz);CHKERRQ(ierr); 2709ae82921SPaul Mullowney ierr = MatSeqAIJSetPreallocation(b->B,o_nz,o_nnz);CHKERRQ(ierr); 271e057df02SPaul Mullowney ierr = MatCUSPARSESetFormat(b->A,MAT_CUSPARSE_MULT,cusparseStruct->diagGPUMatFormat);CHKERRQ(ierr); 272e057df02SPaul Mullowney ierr = MatCUSPARSESetFormat(b->B,MAT_CUSPARSE_MULT,cusparseStruct->offdiagGPUMatFormat);CHKERRQ(ierr); 273b06137fdSPaul Mullowney ierr = MatCUSPARSESetHandle(b->A,cusparseStruct->handle);CHKERRQ(ierr); 274b06137fdSPaul Mullowney ierr = MatCUSPARSESetHandle(b->B,cusparseStruct->handle);CHKERRQ(ierr); 275b06137fdSPaul Mullowney ierr = MatCUSPARSESetStream(b->A,cusparseStruct->stream);CHKERRQ(ierr); 276b06137fdSPaul Mullowney ierr = MatCUSPARSESetStream(b->B,cusparseStruct->stream);CHKERRQ(ierr); 2772205254eSKarl Rupp 2789ae82921SPaul Mullowney B->preallocated = PETSC_TRUE; 2799ae82921SPaul Mullowney PetscFunctionReturn(0); 2809ae82921SPaul Mullowney } 281e057df02SPaul Mullowney 282*4eb5378fSStefano Zampini typedef struct { 283*4eb5378fSStefano Zampini Mat *mp; /* intermediate products */ 284*4eb5378fSStefano Zampini PetscBool *mptmp; /* is the intermediate product temporary ? */ 285*4eb5378fSStefano Zampini PetscInt cp; /* number of intermediate products */ 286*4eb5378fSStefano Zampini 287*4eb5378fSStefano Zampini /* support for MatGetBrowsOfAoCols_MPIAIJ for P_oth */ 288*4eb5378fSStefano Zampini PetscInt *startsj_s,*startsj_r; 289*4eb5378fSStefano Zampini PetscScalar *bufa; 290*4eb5378fSStefano Zampini Mat P_oth; 291*4eb5378fSStefano Zampini 292*4eb5378fSStefano Zampini /* may take advantage of merging product->B */ 293*4eb5378fSStefano Zampini Mat Bloc; 294*4eb5378fSStefano Zampini 295*4eb5378fSStefano Zampini /* cusparse does not have support to split between symbolic and numeric phases 296*4eb5378fSStefano Zampini When api_user is true, we don't need to update the numerical values 297*4eb5378fSStefano Zampini of the temporary storage */ 298*4eb5378fSStefano Zampini PetscBool reusesym; 299*4eb5378fSStefano Zampini 300*4eb5378fSStefano Zampini /* support for COO values insertion */ 301*4eb5378fSStefano Zampini PetscScalar *coo_v,*coo_w; 302*4eb5378fSStefano Zampini PetscSF sf; /* if present, non-local values insertion (i.e. AtB or PtAP) */ 303*4eb5378fSStefano Zampini } MatMatMPIAIJCUSPARSE; 304*4eb5378fSStefano Zampini 305*4eb5378fSStefano Zampini PetscErrorCode MatDestroy_MatMatMPIAIJCUSPARSE(void *data) 306*4eb5378fSStefano Zampini { 307*4eb5378fSStefano Zampini MatMatMPIAIJCUSPARSE *mmdata = (MatMatMPIAIJCUSPARSE*)data; 308*4eb5378fSStefano Zampini PetscInt i; 309*4eb5378fSStefano Zampini PetscErrorCode ierr; 310*4eb5378fSStefano Zampini 311*4eb5378fSStefano Zampini PetscFunctionBegin; 312*4eb5378fSStefano Zampini ierr = PetscFree2(mmdata->startsj_s,mmdata->startsj_r);CHKERRQ(ierr); 313*4eb5378fSStefano Zampini ierr = PetscFree(mmdata->bufa);CHKERRQ(ierr); 314*4eb5378fSStefano Zampini ierr = PetscFree(mmdata->coo_v);CHKERRQ(ierr); 315*4eb5378fSStefano Zampini ierr = PetscFree(mmdata->coo_w);CHKERRQ(ierr); 316*4eb5378fSStefano Zampini ierr = MatDestroy(&mmdata->P_oth);CHKERRQ(ierr); 317*4eb5378fSStefano Zampini ierr = MatDestroy(&mmdata->Bloc);CHKERRQ(ierr); 318*4eb5378fSStefano Zampini ierr = PetscSFDestroy(&mmdata->sf);CHKERRQ(ierr); 319*4eb5378fSStefano Zampini for (i = 0; i < mmdata->cp; i++) { 320*4eb5378fSStefano Zampini ierr = MatDestroy(&mmdata->mp[i]);CHKERRQ(ierr); 321*4eb5378fSStefano Zampini } 322*4eb5378fSStefano Zampini ierr = PetscFree(mmdata->mp);CHKERRQ(ierr); 323*4eb5378fSStefano Zampini ierr = PetscFree(mmdata->mptmp);CHKERRQ(ierr); 324*4eb5378fSStefano Zampini ierr = PetscFree(mmdata);CHKERRQ(ierr); 325*4eb5378fSStefano Zampini PetscFunctionReturn(0); 326*4eb5378fSStefano Zampini } 327*4eb5378fSStefano Zampini 328*4eb5378fSStefano Zampini static PetscErrorCode MatProductNumeric_MPIAIJCUSPARSE_MPIAIJCUSPARSE(Mat C) 329*4eb5378fSStefano Zampini { 330*4eb5378fSStefano Zampini MatMatMPIAIJCUSPARSE *mmdata; 331*4eb5378fSStefano Zampini PetscScalar *tmp; 332*4eb5378fSStefano Zampini PetscInt i,n; 333*4eb5378fSStefano Zampini PetscErrorCode ierr; 334*4eb5378fSStefano Zampini 335*4eb5378fSStefano Zampini PetscFunctionBegin; 336*4eb5378fSStefano Zampini MatCheckProduct(C,1); 337*4eb5378fSStefano Zampini if (!C->product->data) SETERRQ(PetscObjectComm((PetscObject)C),PETSC_ERR_PLIB,"Product data empty"); 338*4eb5378fSStefano Zampini mmdata = (MatMatMPIAIJCUSPARSE*)C->product->data; 339*4eb5378fSStefano Zampini tmp = mmdata->sf ? mmdata->coo_w : mmdata->coo_v; 340*4eb5378fSStefano Zampini if (!mmdata->reusesym) { /* update temporary matrices */ 341*4eb5378fSStefano Zampini if (mmdata->P_oth) { 342*4eb5378fSStefano Zampini ierr = MatGetBrowsOfAoCols_MPIAIJ(C->product->A,C->product->B,MAT_REUSE_MATRIX,&mmdata->startsj_s,&mmdata->startsj_r,&mmdata->bufa,&mmdata->P_oth);CHKERRQ(ierr); 343*4eb5378fSStefano Zampini } 344*4eb5378fSStefano Zampini if (mmdata->Bloc) { 345*4eb5378fSStefano Zampini ierr = MatMPIAIJGetLocalMatMerge(C->product->B,MAT_REUSE_MATRIX,NULL,&mmdata->Bloc);CHKERRQ(ierr); 346*4eb5378fSStefano Zampini } 347*4eb5378fSStefano Zampini } 348*4eb5378fSStefano Zampini mmdata->reusesym = PETSC_FALSE; 349*4eb5378fSStefano Zampini for (i = 0, n = 0; i < mmdata->cp; i++) { 350*4eb5378fSStefano Zampini Mat_SeqAIJ *mm = (Mat_SeqAIJ*)mmdata->mp[i]->data; 351*4eb5378fSStefano Zampini const PetscScalar *vv; 352*4eb5378fSStefano Zampini 353*4eb5378fSStefano Zampini if (!mmdata->mp[i]->ops->productnumeric) SETERRQ1(PetscObjectComm((PetscObject)mmdata->mp[i]),PETSC_ERR_PLIB,"Missing numeric op for %s",MatProductTypes[mmdata->mp[i]->product->type]); 354*4eb5378fSStefano Zampini ierr = (*mmdata->mp[i]->ops->productnumeric)(mmdata->mp[i]);CHKERRQ(ierr); 355*4eb5378fSStefano Zampini if (mmdata->mptmp[i]) continue; 356*4eb5378fSStefano Zampini /* TODO: add support for using GPU data directly */ 357*4eb5378fSStefano Zampini ierr = MatSeqAIJGetArrayRead(mmdata->mp[i],&vv);CHKERRQ(ierr); 358*4eb5378fSStefano Zampini ierr = PetscArraycpy(tmp + n,vv,mm->nz);CHKERRQ(ierr); 359*4eb5378fSStefano Zampini ierr = MatSeqAIJRestoreArrayRead(mmdata->mp[i],&vv);CHKERRQ(ierr); 360*4eb5378fSStefano Zampini n += mm->nz; 361*4eb5378fSStefano Zampini } 362*4eb5378fSStefano Zampini if (mmdata->sf) { /* offprocess insertion */ 363*4eb5378fSStefano Zampini ierr = PetscSFGatherBegin(mmdata->sf,MPIU_SCALAR,tmp,mmdata->coo_v);CHKERRQ(ierr); 364*4eb5378fSStefano Zampini ierr = PetscSFGatherEnd(mmdata->sf,MPIU_SCALAR,tmp,mmdata->coo_v);CHKERRQ(ierr); 365*4eb5378fSStefano Zampini } 366*4eb5378fSStefano Zampini ierr = MatSetValuesCOO(C,mmdata->coo_v,INSERT_VALUES);CHKERRQ(ierr); 367*4eb5378fSStefano Zampini PetscFunctionReturn(0); 368*4eb5378fSStefano Zampini } 369*4eb5378fSStefano Zampini 370*4eb5378fSStefano Zampini /* Pt * A or A * P */ 371*4eb5378fSStefano Zampini #define MAX_NUMBER_INTERMEDIATE 4 372*4eb5378fSStefano Zampini static PetscErrorCode MatProductSymbolic_MPIAIJCUSPARSE_MPIAIJCUSPARSE(Mat C) 373*4eb5378fSStefano Zampini { 374*4eb5378fSStefano Zampini Mat_Product *product = C->product; 375*4eb5378fSStefano Zampini Mat A,P,mp[MAX_NUMBER_INTERMEDIATE]; 376*4eb5378fSStefano Zampini Mat_MPIAIJ *a,*p; 377*4eb5378fSStefano Zampini MatMatMPIAIJCUSPARSE *mmdata; 378*4eb5378fSStefano Zampini ISLocalToGlobalMapping P_oth_l2g = NULL; 379*4eb5378fSStefano Zampini IS glob = NULL; 380*4eb5378fSStefano Zampini const PetscInt *globidx,*P_oth_idx; 381*4eb5378fSStefano Zampini const PetscInt *cmapa[MAX_NUMBER_INTERMEDIATE],*rmapa[MAX_NUMBER_INTERMEDIATE]; 382*4eb5378fSStefano Zampini PetscInt cp = 0,m,n,M,N,ncoo,*coo_i,*coo_j,cmapt[MAX_NUMBER_INTERMEDIATE],rmapt[MAX_NUMBER_INTERMEDIATE],i,j; 383*4eb5378fSStefano Zampini MatProductType ptype; 384*4eb5378fSStefano Zampini PetscBool mptmp[MAX_NUMBER_INTERMEDIATE],hasoffproc = PETSC_FALSE; 385*4eb5378fSStefano Zampini PetscMPIInt size; 386*4eb5378fSStefano Zampini PetscErrorCode ierr; 387*4eb5378fSStefano Zampini 388*4eb5378fSStefano Zampini PetscFunctionBegin; 389*4eb5378fSStefano Zampini MatCheckProduct(C,1); 390*4eb5378fSStefano Zampini if (product->data) SETERRQ(PetscObjectComm((PetscObject)C),PETSC_ERR_PLIB,"Product data not empty"); 391*4eb5378fSStefano Zampini ptype = product->type; 392*4eb5378fSStefano Zampini if (product->A->symmetric && ptype == MATPRODUCT_AtB) ptype = MATPRODUCT_AB; 393*4eb5378fSStefano Zampini switch (ptype) { 394*4eb5378fSStefano Zampini case MATPRODUCT_AB: 395*4eb5378fSStefano Zampini A = product->A; 396*4eb5378fSStefano Zampini P = product->B; 397*4eb5378fSStefano Zampini m = A->rmap->n; 398*4eb5378fSStefano Zampini n = P->cmap->n; 399*4eb5378fSStefano Zampini M = A->rmap->N; 400*4eb5378fSStefano Zampini N = P->cmap->N; 401*4eb5378fSStefano Zampini break; 402*4eb5378fSStefano Zampini case MATPRODUCT_AtB: 403*4eb5378fSStefano Zampini P = product->A; 404*4eb5378fSStefano Zampini A = product->B; 405*4eb5378fSStefano Zampini m = P->cmap->n; 406*4eb5378fSStefano Zampini n = A->cmap->n; 407*4eb5378fSStefano Zampini M = P->cmap->N; 408*4eb5378fSStefano Zampini N = A->cmap->N; 409*4eb5378fSStefano Zampini hasoffproc = PETSC_TRUE; 410*4eb5378fSStefano Zampini break; 411*4eb5378fSStefano Zampini case MATPRODUCT_PtAP: 412*4eb5378fSStefano Zampini A = product->A; 413*4eb5378fSStefano Zampini P = product->B; 414*4eb5378fSStefano Zampini m = P->cmap->n; 415*4eb5378fSStefano Zampini n = P->cmap->n; 416*4eb5378fSStefano Zampini M = P->cmap->N; 417*4eb5378fSStefano Zampini N = P->cmap->N; 418*4eb5378fSStefano Zampini hasoffproc = PETSC_TRUE; 419*4eb5378fSStefano Zampini break; 420*4eb5378fSStefano Zampini default: 421*4eb5378fSStefano Zampini SETERRQ1(PetscObjectComm((PetscObject)C),PETSC_ERR_PLIB,"Not for product type %s",MatProductTypes[ptype]); 422*4eb5378fSStefano Zampini } 423*4eb5378fSStefano Zampini ierr = MPI_Comm_size(PetscObjectComm((PetscObject)C),&size);CHKERRQ(ierr); 424*4eb5378fSStefano Zampini if (size == 1) hasoffproc = PETSC_FALSE; 425*4eb5378fSStefano Zampini 426*4eb5378fSStefano Zampini for (i=0;i<MAX_NUMBER_INTERMEDIATE;i++) { 427*4eb5378fSStefano Zampini mp[i] = NULL; 428*4eb5378fSStefano Zampini mptmp[i] = PETSC_FALSE; 429*4eb5378fSStefano Zampini rmapt[i] = 0; 430*4eb5378fSStefano Zampini cmapt[i] = 0; 431*4eb5378fSStefano Zampini rmapa[i] = NULL; 432*4eb5378fSStefano Zampini cmapa[i] = NULL; 433*4eb5378fSStefano Zampini } 434*4eb5378fSStefano Zampini 435*4eb5378fSStefano Zampini a = (Mat_MPIAIJ*)A->data; 436*4eb5378fSStefano Zampini p = (Mat_MPIAIJ*)P->data; 437*4eb5378fSStefano Zampini ierr = MatSetSizes(C,m,n,M,N);CHKERRQ(ierr); 438*4eb5378fSStefano Zampini ierr = PetscLayoutSetUp(C->rmap);CHKERRQ(ierr); 439*4eb5378fSStefano Zampini ierr = PetscLayoutSetUp(C->cmap);CHKERRQ(ierr); 440*4eb5378fSStefano Zampini ierr = MatSetType(C,MATMPIAIJCUSPARSE);CHKERRQ(ierr); 441*4eb5378fSStefano Zampini ierr = PetscNew(&mmdata);CHKERRQ(ierr); 442*4eb5378fSStefano Zampini mmdata->reusesym = product->api_user; 443*4eb5378fSStefano Zampini switch (ptype) { 444*4eb5378fSStefano Zampini case MATPRODUCT_AB: /* A * P */ 445*4eb5378fSStefano Zampini ierr = MatGetBrowsOfAoCols_MPIAIJ(A,P,MAT_INITIAL_MATRIX,&mmdata->startsj_s,&mmdata->startsj_r,&mmdata->bufa,&mmdata->P_oth);CHKERRQ(ierr); 446*4eb5378fSStefano Zampini 447*4eb5378fSStefano Zampini if (1) { /* A_diag * P_loc and A_off * P_oth TODO: add customization for this */ 448*4eb5378fSStefano Zampini /* P is product->B */ 449*4eb5378fSStefano Zampini ierr = MatMPIAIJGetLocalMatMerge(P,MAT_INITIAL_MATRIX,&glob,&mmdata->Bloc);CHKERRQ(ierr); 450*4eb5378fSStefano Zampini ierr = MatProductCreate(a->A,mmdata->Bloc,NULL,&mp[cp]);CHKERRQ(ierr); 451*4eb5378fSStefano Zampini ierr = MatProductSetType(mp[cp],MATPRODUCT_AB);CHKERRQ(ierr); 452*4eb5378fSStefano Zampini ierr = MatProductSetFill(mp[cp],product->fill);CHKERRQ(ierr); 453*4eb5378fSStefano Zampini mp[cp]->product->api_user = product->api_user; 454*4eb5378fSStefano Zampini ierr = MatProductSetFromOptions(mp[cp]);CHKERRQ(ierr); 455*4eb5378fSStefano Zampini if (!mp[cp]->ops->productsymbolic) SETERRQ1(PetscObjectComm((PetscObject)mp[cp]),PETSC_ERR_PLIB,"Missing symbolic op for %s",MatProductTypes[mp[cp]->product->type]); 456*4eb5378fSStefano Zampini ierr = (*mp[cp]->ops->productsymbolic)(mp[cp]);CHKERRQ(ierr); 457*4eb5378fSStefano Zampini ierr = ISGetIndices(glob,&globidx);CHKERRQ(ierr); 458*4eb5378fSStefano Zampini rmapt[cp] = 1; 459*4eb5378fSStefano Zampini cmapt[cp] = 2; 460*4eb5378fSStefano Zampini cmapa[cp] = globidx; 461*4eb5378fSStefano Zampini mptmp[cp] = PETSC_FALSE; 462*4eb5378fSStefano Zampini cp++; 463*4eb5378fSStefano Zampini } else { /* A_diag * P_diag and A_diag * P_off and A_off * P_oth */ 464*4eb5378fSStefano Zampini ierr = MatProductCreate(a->A,p->A,NULL,&mp[cp]);CHKERRQ(ierr); 465*4eb5378fSStefano Zampini ierr = MatProductSetType(mp[cp],MATPRODUCT_AB);CHKERRQ(ierr); 466*4eb5378fSStefano Zampini ierr = MatProductSetFill(mp[cp],product->fill);CHKERRQ(ierr); 467*4eb5378fSStefano Zampini mp[cp]->product->api_user = product->api_user; 468*4eb5378fSStefano Zampini ierr = MatProductSetFromOptions(mp[cp]);CHKERRQ(ierr); 469*4eb5378fSStefano Zampini if (!mp[cp]->ops->productsymbolic) SETERRQ1(PetscObjectComm((PetscObject)mp[cp]),PETSC_ERR_PLIB,"Missing symbolic op for %s",MatProductTypes[mp[cp]->product->type]); 470*4eb5378fSStefano Zampini ierr = (*mp[cp]->ops->productsymbolic)(mp[cp]);CHKERRQ(ierr); 471*4eb5378fSStefano Zampini rmapt[cp] = 1; 472*4eb5378fSStefano Zampini cmapt[cp] = 1; 473*4eb5378fSStefano Zampini mptmp[cp] = PETSC_FALSE; 474*4eb5378fSStefano Zampini cp++; 475*4eb5378fSStefano Zampini ierr = MatProductCreate(a->A,p->B,NULL,&mp[cp]);CHKERRQ(ierr); 476*4eb5378fSStefano Zampini ierr = MatProductSetType(mp[cp],MATPRODUCT_AB);CHKERRQ(ierr); 477*4eb5378fSStefano Zampini ierr = MatProductSetFill(mp[cp],product->fill);CHKERRQ(ierr); 478*4eb5378fSStefano Zampini mp[cp]->product->api_user = product->api_user; 479*4eb5378fSStefano Zampini ierr = MatProductSetFromOptions(mp[cp]);CHKERRQ(ierr); 480*4eb5378fSStefano Zampini if (!mp[cp]->ops->productsymbolic) SETERRQ1(PetscObjectComm((PetscObject)mp[cp]),PETSC_ERR_PLIB,"Missing symbolic op for %s",MatProductTypes[mp[cp]->product->type]); 481*4eb5378fSStefano Zampini ierr = (*mp[cp]->ops->productsymbolic)(mp[cp]);CHKERRQ(ierr); 482*4eb5378fSStefano Zampini rmapt[cp] = 1; 483*4eb5378fSStefano Zampini cmapt[cp] = 2; 484*4eb5378fSStefano Zampini cmapa[cp] = p->garray; 485*4eb5378fSStefano Zampini mptmp[cp] = PETSC_FALSE; 486*4eb5378fSStefano Zampini cp++; 487*4eb5378fSStefano Zampini } 488*4eb5378fSStefano Zampini if (mmdata->P_oth) { 489*4eb5378fSStefano Zampini ierr = MatSeqAIJCompactOutExtraColumns_SeqAIJ(mmdata->P_oth,&P_oth_l2g);CHKERRQ(ierr); 490*4eb5378fSStefano Zampini ierr = ISLocalToGlobalMappingGetIndices(P_oth_l2g,&P_oth_idx);CHKERRQ(ierr); 491*4eb5378fSStefano Zampini ierr = MatSetType(mmdata->P_oth,((PetscObject)(a->B))->type_name);CHKERRQ(ierr); 492*4eb5378fSStefano Zampini ierr = MatProductCreate(a->B,mmdata->P_oth,NULL,&mp[cp]);CHKERRQ(ierr); 493*4eb5378fSStefano Zampini ierr = MatProductSetType(mp[cp],MATPRODUCT_AB);CHKERRQ(ierr); 494*4eb5378fSStefano Zampini ierr = MatProductSetFill(mp[cp],product->fill);CHKERRQ(ierr); 495*4eb5378fSStefano Zampini mp[cp]->product->api_user = product->api_user; 496*4eb5378fSStefano Zampini ierr = MatProductSetFromOptions(mp[cp]);CHKERRQ(ierr); 497*4eb5378fSStefano Zampini if (!mp[cp]->ops->productsymbolic) SETERRQ1(PetscObjectComm((PetscObject)mp[cp]),PETSC_ERR_PLIB,"Missing symbolic op for %s",MatProductTypes[mp[cp]->product->type]); 498*4eb5378fSStefano Zampini ierr = (*mp[cp]->ops->productsymbolic)(mp[cp]);CHKERRQ(ierr); 499*4eb5378fSStefano Zampini rmapt[cp] = 1; 500*4eb5378fSStefano Zampini cmapt[cp] = 2; 501*4eb5378fSStefano Zampini cmapa[cp] = P_oth_idx; 502*4eb5378fSStefano Zampini mptmp[cp] = PETSC_FALSE; 503*4eb5378fSStefano Zampini cp++; 504*4eb5378fSStefano Zampini } 505*4eb5378fSStefano Zampini break; 506*4eb5378fSStefano Zampini case MATPRODUCT_AtB: /* (P^t * A): P_diag * A_loc + P_off * A_loc */ 507*4eb5378fSStefano Zampini /* A is product->B */ 508*4eb5378fSStefano Zampini ierr = MatMPIAIJGetLocalMatMerge(A,MAT_INITIAL_MATRIX,&glob,&mmdata->Bloc);CHKERRQ(ierr); 509*4eb5378fSStefano Zampini ierr = MatProductCreate(p->A,mmdata->Bloc,NULL,&mp[cp]);CHKERRQ(ierr); 510*4eb5378fSStefano Zampini ierr = MatProductSetType(mp[cp],MATPRODUCT_AtB);CHKERRQ(ierr); 511*4eb5378fSStefano Zampini ierr = MatProductSetFill(mp[cp],product->fill);CHKERRQ(ierr); 512*4eb5378fSStefano Zampini mp[cp]->product->api_user = product->api_user; 513*4eb5378fSStefano Zampini ierr = MatProductSetFromOptions(mp[cp]);CHKERRQ(ierr); 514*4eb5378fSStefano Zampini if (!mp[cp]->ops->productsymbolic) SETERRQ1(PetscObjectComm((PetscObject)mp[cp]),PETSC_ERR_PLIB,"Missing symbolic op for %s",MatProductTypes[mp[cp]->product->type]); 515*4eb5378fSStefano Zampini ierr = (*mp[cp]->ops->productsymbolic)(mp[cp]);CHKERRQ(ierr); 516*4eb5378fSStefano Zampini ierr = ISGetIndices(glob,&globidx);CHKERRQ(ierr); 517*4eb5378fSStefano Zampini rmapt[cp] = 1; 518*4eb5378fSStefano Zampini cmapt[cp] = 2; 519*4eb5378fSStefano Zampini cmapa[cp] = globidx; 520*4eb5378fSStefano Zampini mptmp[cp] = PETSC_FALSE; 521*4eb5378fSStefano Zampini cp++; 522*4eb5378fSStefano Zampini ierr = MatProductCreate(p->B,mmdata->Bloc,NULL,&mp[cp]);CHKERRQ(ierr); 523*4eb5378fSStefano Zampini ierr = MatProductSetType(mp[cp],MATPRODUCT_AtB);CHKERRQ(ierr); 524*4eb5378fSStefano Zampini ierr = MatProductSetFill(mp[cp],product->fill);CHKERRQ(ierr); 525*4eb5378fSStefano Zampini mp[cp]->product->api_user = product->api_user; 526*4eb5378fSStefano Zampini ierr = MatProductSetFromOptions(mp[cp]);CHKERRQ(ierr); 527*4eb5378fSStefano Zampini if (!mp[cp]->ops->productsymbolic) SETERRQ1(PetscObjectComm((PetscObject)mp[cp]),PETSC_ERR_PLIB,"Missing symbolic op for %s",MatProductTypes[mp[cp]->product->type]); 528*4eb5378fSStefano Zampini ierr = (*mp[cp]->ops->productsymbolic)(mp[cp]);CHKERRQ(ierr); 529*4eb5378fSStefano Zampini rmapt[cp] = 2; 530*4eb5378fSStefano Zampini rmapa[cp] = p->garray; 531*4eb5378fSStefano Zampini cmapt[cp] = 2; 532*4eb5378fSStefano Zampini cmapa[cp] = globidx; 533*4eb5378fSStefano Zampini mptmp[cp] = PETSC_FALSE; 534*4eb5378fSStefano Zampini cp++; 535*4eb5378fSStefano Zampini break; 536*4eb5378fSStefano Zampini case MATPRODUCT_PtAP: 537*4eb5378fSStefano Zampini ierr = MatGetBrowsOfAoCols_MPIAIJ(A,P,MAT_INITIAL_MATRIX,&mmdata->startsj_s,&mmdata->startsj_r,&mmdata->bufa,&mmdata->P_oth);CHKERRQ(ierr); 538*4eb5378fSStefano Zampini /* P is product->B */ 539*4eb5378fSStefano Zampini ierr = MatMPIAIJGetLocalMatMerge(P,MAT_INITIAL_MATRIX,&glob,&mmdata->Bloc);CHKERRQ(ierr); 540*4eb5378fSStefano Zampini ierr = MatProductCreate(a->A,mmdata->Bloc,NULL,&mp[cp]);CHKERRQ(ierr); 541*4eb5378fSStefano Zampini ierr = MatProductSetType(mp[cp],MATPRODUCT_PtAP);CHKERRQ(ierr); 542*4eb5378fSStefano Zampini ierr = MatProductSetFill(mp[cp],product->fill);CHKERRQ(ierr); 543*4eb5378fSStefano Zampini mp[cp]->product->api_user = product->api_user; 544*4eb5378fSStefano Zampini ierr = MatProductSetFromOptions(mp[cp]);CHKERRQ(ierr); 545*4eb5378fSStefano Zampini if (!mp[cp]->ops->productsymbolic) SETERRQ1(PetscObjectComm((PetscObject)mp[cp]),PETSC_ERR_PLIB,"Missing symbolic op for %s",MatProductTypes[mp[cp]->product->type]); 546*4eb5378fSStefano Zampini ierr = (*mp[cp]->ops->productsymbolic)(mp[cp]);CHKERRQ(ierr); 547*4eb5378fSStefano Zampini ierr = ISGetIndices(glob,&globidx);CHKERRQ(ierr); 548*4eb5378fSStefano Zampini rmapt[cp] = 2; 549*4eb5378fSStefano Zampini rmapa[cp] = globidx; 550*4eb5378fSStefano Zampini cmapt[cp] = 2; 551*4eb5378fSStefano Zampini cmapa[cp] = globidx; 552*4eb5378fSStefano Zampini mptmp[cp] = PETSC_FALSE; 553*4eb5378fSStefano Zampini cp++; 554*4eb5378fSStefano Zampini if (mmdata->P_oth) { 555*4eb5378fSStefano Zampini ierr = MatSeqAIJCompactOutExtraColumns_SeqAIJ(mmdata->P_oth,&P_oth_l2g);CHKERRQ(ierr); 556*4eb5378fSStefano Zampini ierr = MatSetType(mmdata->P_oth,((PetscObject)(a->B))->type_name);CHKERRQ(ierr); 557*4eb5378fSStefano Zampini ierr = ISLocalToGlobalMappingGetIndices(P_oth_l2g,&P_oth_idx);CHKERRQ(ierr); 558*4eb5378fSStefano Zampini ierr = MatProductCreate(a->B,mmdata->P_oth,NULL,&mp[cp]);CHKERRQ(ierr); 559*4eb5378fSStefano Zampini ierr = MatProductSetType(mp[cp],MATPRODUCT_AB);CHKERRQ(ierr); 560*4eb5378fSStefano Zampini ierr = MatProductSetFill(mp[cp],product->fill);CHKERRQ(ierr); 561*4eb5378fSStefano Zampini mp[cp]->product->api_user = product->api_user; 562*4eb5378fSStefano Zampini ierr = MatProductSetFromOptions(mp[cp]);CHKERRQ(ierr); 563*4eb5378fSStefano Zampini if (!mp[cp]->ops->productsymbolic) SETERRQ1(PetscObjectComm((PetscObject)mp[cp]),PETSC_ERR_PLIB,"Missing symbolic op for %s",MatProductTypes[mp[cp]->product->type]); 564*4eb5378fSStefano Zampini ierr = (*mp[cp]->ops->productsymbolic)(mp[cp]);CHKERRQ(ierr); 565*4eb5378fSStefano Zampini mptmp[cp] = PETSC_TRUE; 566*4eb5378fSStefano Zampini cp++; 567*4eb5378fSStefano Zampini ierr = MatProductCreate(mmdata->Bloc,mp[1],NULL,&mp[cp]);CHKERRQ(ierr); 568*4eb5378fSStefano Zampini ierr = MatProductSetType(mp[cp],MATPRODUCT_AtB);CHKERRQ(ierr); 569*4eb5378fSStefano Zampini ierr = MatProductSetFill(mp[cp],product->fill);CHKERRQ(ierr); 570*4eb5378fSStefano Zampini mp[cp]->product->api_user = product->api_user; 571*4eb5378fSStefano Zampini ierr = MatProductSetFromOptions(mp[cp]);CHKERRQ(ierr); 572*4eb5378fSStefano Zampini if (!mp[cp]->ops->productsymbolic) SETERRQ1(PetscObjectComm((PetscObject)mp[cp]),PETSC_ERR_PLIB,"Missing symbolic op for %s",MatProductTypes[mp[cp]->product->type]); 573*4eb5378fSStefano Zampini ierr = (*mp[cp]->ops->productsymbolic)(mp[cp]);CHKERRQ(ierr); 574*4eb5378fSStefano Zampini rmapt[cp] = 2; 575*4eb5378fSStefano Zampini rmapa[cp] = globidx; 576*4eb5378fSStefano Zampini cmapt[cp] = 2; 577*4eb5378fSStefano Zampini cmapa[cp] = P_oth_idx; 578*4eb5378fSStefano Zampini mptmp[cp] = PETSC_FALSE; 579*4eb5378fSStefano Zampini cp++; 580*4eb5378fSStefano Zampini } 581*4eb5378fSStefano Zampini break; 582*4eb5378fSStefano Zampini default: 583*4eb5378fSStefano Zampini SETERRQ1(PetscObjectComm((PetscObject)C),PETSC_ERR_PLIB,"Not for product type %s",MatProductTypes[ptype]); 584*4eb5378fSStefano Zampini } 585*4eb5378fSStefano Zampini ierr = PetscMalloc1(cp,&mmdata->mp);CHKERRQ(ierr); 586*4eb5378fSStefano Zampini for (i = 0; i < cp; i++) mmdata->mp[i] = mp[i]; 587*4eb5378fSStefano Zampini ierr = PetscMalloc1(cp,&mmdata->mptmp);CHKERRQ(ierr); 588*4eb5378fSStefano Zampini for (i = 0; i < cp; i++) mmdata->mptmp[i] = mptmp[i]; 589*4eb5378fSStefano Zampini mmdata->cp = cp; 590*4eb5378fSStefano Zampini C->product->data = mmdata; 591*4eb5378fSStefano Zampini C->product->destroy = MatDestroy_MatMatMPIAIJCUSPARSE; 592*4eb5378fSStefano Zampini C->ops->productnumeric = MatProductNumeric_MPIAIJCUSPARSE_MPIAIJCUSPARSE; 593*4eb5378fSStefano Zampini 594*4eb5378fSStefano Zampini /* prepare coo coordinates for values insertion */ 595*4eb5378fSStefano Zampini ncoo = 0; 596*4eb5378fSStefano Zampini for (cp = 0; cp < mmdata->cp; cp++) { 597*4eb5378fSStefano Zampini Mat_SeqAIJ *mm = (Mat_SeqAIJ*)mp[cp]->data; 598*4eb5378fSStefano Zampini if (mptmp[cp]) continue; 599*4eb5378fSStefano Zampini ncoo += mm->nz; 600*4eb5378fSStefano Zampini } 601*4eb5378fSStefano Zampini ierr = PetscMalloc2(ncoo,&coo_i,ncoo,&coo_j);CHKERRQ(ierr); 602*4eb5378fSStefano Zampini ncoo = 0; 603*4eb5378fSStefano Zampini for (cp = 0; cp < mmdata->cp; cp++) { 604*4eb5378fSStefano Zampini Mat_SeqAIJ *mm = (Mat_SeqAIJ*)mp[cp]->data; 605*4eb5378fSStefano Zampini PetscInt *coi = coo_i + ncoo; 606*4eb5378fSStefano Zampini PetscInt *coj = coo_j + ncoo; 607*4eb5378fSStefano Zampini const PetscInt mr = mp[cp]->rmap->n; 608*4eb5378fSStefano Zampini const PetscInt *jj = mm->j; 609*4eb5378fSStefano Zampini const PetscInt *ii = mm->i; 610*4eb5378fSStefano Zampini 611*4eb5378fSStefano Zampini if (mptmp[cp]) continue; 612*4eb5378fSStefano Zampini /* rows coo */ 613*4eb5378fSStefano Zampini if (!rmapt[cp]) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"This should not happen"); 614*4eb5378fSStefano Zampini else if (rmapt[cp] == 1) { /* local to global for owned rows of */ 615*4eb5378fSStefano Zampini const PetscInt rs = C->rmap->rstart; 616*4eb5378fSStefano Zampini for (i = 0; i < mr; i++) { 617*4eb5378fSStefano Zampini const PetscInt gr = i + rs; 618*4eb5378fSStefano Zampini for (j = ii[i]; j < ii[i+1]; j++) { 619*4eb5378fSStefano Zampini coi[j] = gr; 620*4eb5378fSStefano Zampini } 621*4eb5378fSStefano Zampini } 622*4eb5378fSStefano Zampini } else { /* offprocess */ 623*4eb5378fSStefano Zampini const PetscInt *rmap = rmapa[cp]; 624*4eb5378fSStefano Zampini for (i = 0; i < mr; i++) { 625*4eb5378fSStefano Zampini const PetscInt gr = rmap[i]; 626*4eb5378fSStefano Zampini for (j = ii[i]; j < ii[i+1]; j++) { 627*4eb5378fSStefano Zampini coi[j] = gr; 628*4eb5378fSStefano Zampini } 629*4eb5378fSStefano Zampini } 630*4eb5378fSStefano Zampini } 631*4eb5378fSStefano Zampini /* columns coo */ 632*4eb5378fSStefano Zampini if (!cmapt[cp]) { 633*4eb5378fSStefano Zampini ierr = PetscArraycpy(coj,jj,mm->nz);CHKERRQ(ierr); 634*4eb5378fSStefano Zampini } else if (cmapt[cp] == 1) { /* local to global for owned columns of P */ 635*4eb5378fSStefano Zampini const PetscInt cs = P->cmap->rstart; 636*4eb5378fSStefano Zampini for (j = 0; j < mm->nz; j++) { 637*4eb5378fSStefano Zampini coj[j] = jj[j] + cs; 638*4eb5378fSStefano Zampini } 639*4eb5378fSStefano Zampini } else { /* offdiag */ 640*4eb5378fSStefano Zampini const PetscInt *cmap = cmapa[cp]; 641*4eb5378fSStefano Zampini for (j = 0; j < mm->nz; j++) { 642*4eb5378fSStefano Zampini coj[j] = cmap[jj[j]]; 643*4eb5378fSStefano Zampini } 644*4eb5378fSStefano Zampini } 645*4eb5378fSStefano Zampini ncoo += mm->nz; 646*4eb5378fSStefano Zampini } 647*4eb5378fSStefano Zampini if (glob) { 648*4eb5378fSStefano Zampini ierr = ISRestoreIndices(glob,&globidx);CHKERRQ(ierr); 649*4eb5378fSStefano Zampini } 650*4eb5378fSStefano Zampini ierr = ISDestroy(&glob);CHKERRQ(ierr); 651*4eb5378fSStefano Zampini if (P_oth_l2g) { 652*4eb5378fSStefano Zampini ierr = ISLocalToGlobalMappingRestoreIndices(P_oth_l2g,&P_oth_idx);CHKERRQ(ierr); 653*4eb5378fSStefano Zampini } 654*4eb5378fSStefano Zampini ierr = ISLocalToGlobalMappingDestroy(&P_oth_l2g);CHKERRQ(ierr); 655*4eb5378fSStefano Zampini 656*4eb5378fSStefano Zampini if (hasoffproc) { /* offproc values insertion */ 657*4eb5378fSStefano Zampini const PetscInt *sfdeg; 658*4eb5378fSStefano Zampini const PetscInt n = P->cmap->n; 659*4eb5378fSStefano Zampini PetscInt ncoo2,*coo_i2,*coo_j2; 660*4eb5378fSStefano Zampini 661*4eb5378fSStefano Zampini ierr = PetscSFCreate(PetscObjectComm((PetscObject)C),&mmdata->sf);CHKERRQ(ierr); 662*4eb5378fSStefano Zampini ierr = PetscSFSetGraphLayout(mmdata->sf,P->cmap,ncoo,NULL,PETSC_OWN_POINTER,coo_i);CHKERRQ(ierr); 663*4eb5378fSStefano Zampini ierr = PetscSFComputeDegreeBegin(mmdata->sf,&sfdeg);CHKERRQ(ierr); 664*4eb5378fSStefano Zampini ierr = PetscSFComputeDegreeEnd(mmdata->sf,&sfdeg);CHKERRQ(ierr); 665*4eb5378fSStefano Zampini for (i = 0, ncoo2 = 0; i < n; i++) ncoo2 += sfdeg[i]; 666*4eb5378fSStefano Zampini ierr = PetscMalloc2(ncoo2,&coo_i2,ncoo2,&coo_j2);CHKERRQ(ierr); 667*4eb5378fSStefano Zampini ierr = PetscSFGatherBegin(mmdata->sf,MPIU_INT,coo_i,coo_i2);CHKERRQ(ierr); 668*4eb5378fSStefano Zampini ierr = PetscSFGatherEnd(mmdata->sf,MPIU_INT,coo_i,coo_i2);CHKERRQ(ierr); 669*4eb5378fSStefano Zampini ierr = PetscSFGatherBegin(mmdata->sf,MPIU_INT,coo_j,coo_j2);CHKERRQ(ierr); 670*4eb5378fSStefano Zampini ierr = PetscSFGatherEnd(mmdata->sf,MPIU_INT,coo_j,coo_j2);CHKERRQ(ierr); 671*4eb5378fSStefano Zampini ierr = PetscFree2(coo_i,coo_j);CHKERRQ(ierr); 672*4eb5378fSStefano Zampini ierr = PetscMalloc1(ncoo,&mmdata->coo_w);CHKERRQ(ierr); 673*4eb5378fSStefano Zampini coo_i = coo_i2; 674*4eb5378fSStefano Zampini coo_j = coo_j2; 675*4eb5378fSStefano Zampini ncoo = ncoo2; 676*4eb5378fSStefano Zampini } 677*4eb5378fSStefano Zampini 678*4eb5378fSStefano Zampini /* preallocate with COO data */ 679*4eb5378fSStefano Zampini ierr = MatSetPreallocationCOO(C,ncoo,coo_i,coo_j);CHKERRQ(ierr); 680*4eb5378fSStefano Zampini ierr = PetscMalloc1(ncoo,&mmdata->coo_v);CHKERRQ(ierr); 681*4eb5378fSStefano Zampini ierr = PetscFree2(coo_i,coo_j);CHKERRQ(ierr); 682*4eb5378fSStefano Zampini PetscFunctionReturn(0); 683*4eb5378fSStefano Zampini } 684*4eb5378fSStefano Zampini 685*4eb5378fSStefano Zampini static PetscErrorCode MatProductSetFromOptions_MPIAIJCUSPARSE(Mat mat) 686*4eb5378fSStefano Zampini { 687*4eb5378fSStefano Zampini Mat_Product *product = mat->product; 688*4eb5378fSStefano Zampini PetscErrorCode ierr; 689*4eb5378fSStefano Zampini PetscBool Biscusp = PETSC_FALSE; 690*4eb5378fSStefano Zampini 691*4eb5378fSStefano Zampini PetscFunctionBegin; 692*4eb5378fSStefano Zampini MatCheckProduct(mat,1); 693*4eb5378fSStefano Zampini if (!product->B->boundtocpu) { 694*4eb5378fSStefano Zampini ierr = PetscObjectTypeCompare((PetscObject)product->B,MATMPIAIJCUSPARSE,&Biscusp);CHKERRQ(ierr); 695*4eb5378fSStefano Zampini } 696*4eb5378fSStefano Zampini if (Biscusp) { 697*4eb5378fSStefano Zampini switch (product->type) { 698*4eb5378fSStefano Zampini case MATPRODUCT_AB: 699*4eb5378fSStefano Zampini case MATPRODUCT_AtB: 700*4eb5378fSStefano Zampini case MATPRODUCT_PtAP: 701*4eb5378fSStefano Zampini mat->ops->productsymbolic = MatProductSymbolic_MPIAIJCUSPARSE_MPIAIJCUSPARSE; 702*4eb5378fSStefano Zampini break; 703*4eb5378fSStefano Zampini default: 704*4eb5378fSStefano Zampini break; 705*4eb5378fSStefano Zampini } 706*4eb5378fSStefano Zampini } 707*4eb5378fSStefano Zampini if (!mat->ops->productsymbolic) { 708*4eb5378fSStefano Zampini ierr = MatProductSetFromOptions_MPIAIJ(mat);CHKERRQ(ierr); 709*4eb5378fSStefano Zampini } 710*4eb5378fSStefano Zampini PetscFunctionReturn(0); 711*4eb5378fSStefano Zampini } 712*4eb5378fSStefano Zampini 7139ae82921SPaul Mullowney PetscErrorCode MatMult_MPIAIJCUSPARSE(Mat A,Vec xx,Vec yy) 7149ae82921SPaul Mullowney { 7159ae82921SPaul Mullowney Mat_MPIAIJ *a = (Mat_MPIAIJ*)A->data; 7169ae82921SPaul Mullowney PetscErrorCode ierr; 7179ae82921SPaul Mullowney PetscInt nt; 7189ae82921SPaul Mullowney 7199ae82921SPaul Mullowney PetscFunctionBegin; 7209ae82921SPaul Mullowney ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 7219ae82921SPaul Mullowney if (nt != A->cmap->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A (%D) and xx (%D)",A->cmap->n,nt); 7229ae82921SPaul Mullowney ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 7234d55d066SJunchao Zhang ierr = (*a->A->ops->mult)(a->A,xx,yy);CHKERRQ(ierr); 7249ae82921SPaul Mullowney ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 7259ae82921SPaul Mullowney ierr = (*a->B->ops->multadd)(a->B,a->lvec,yy,yy);CHKERRQ(ierr); 7269ae82921SPaul Mullowney PetscFunctionReturn(0); 7279ae82921SPaul Mullowney } 728ca45077fSPaul Mullowney 7293fa6b06aSMark Adams PetscErrorCode MatZeroEntries_MPIAIJCUSPARSE(Mat A) 7303fa6b06aSMark Adams { 7313fa6b06aSMark Adams Mat_MPIAIJ *l = (Mat_MPIAIJ*)A->data; 7323fa6b06aSMark Adams PetscErrorCode ierr; 7333fa6b06aSMark Adams 7343fa6b06aSMark Adams PetscFunctionBegin; 7353fa6b06aSMark Adams if (A->factortype == MAT_FACTOR_NONE) { 7363fa6b06aSMark Adams Mat_MPIAIJCUSPARSE *spptr = (Mat_MPIAIJCUSPARSE*)l->spptr; 7373fa6b06aSMark Adams PetscSplitCSRDataStructure *d_mat = spptr->deviceMat; 7383fa6b06aSMark Adams if (d_mat) { 7393fa6b06aSMark Adams Mat_SeqAIJ *a = (Mat_SeqAIJ*)l->A->data; 7403fa6b06aSMark Adams Mat_SeqAIJ *b = (Mat_SeqAIJ*)l->B->data; 7413fa6b06aSMark Adams PetscInt n = A->rmap->n, nnza = a->i[n], nnzb = b->i[n]; 7423fa6b06aSMark Adams cudaError_t err; 7433fa6b06aSMark Adams PetscScalar *vals; 7443fa6b06aSMark Adams ierr = PetscInfo(A,"Zero device matrix diag and offfdiag\n");CHKERRQ(ierr); 7453fa6b06aSMark Adams err = cudaMemcpy( &vals, &d_mat->diag.a, sizeof(PetscScalar*), cudaMemcpyDeviceToHost);CHKERRCUDA(err); 7463fa6b06aSMark Adams err = cudaMemset( vals, 0, (nnza)*sizeof(PetscScalar));CHKERRCUDA(err); 7473fa6b06aSMark Adams err = cudaMemcpy( &vals, &d_mat->offdiag.a, sizeof(PetscScalar*), cudaMemcpyDeviceToHost);CHKERRCUDA(err); 7483fa6b06aSMark Adams err = cudaMemset( vals, 0, (nnzb)*sizeof(PetscScalar));CHKERRCUDA(err); 7493fa6b06aSMark Adams } 7503fa6b06aSMark Adams } 7513fa6b06aSMark Adams ierr = MatZeroEntries(l->A);CHKERRQ(ierr); 7523fa6b06aSMark Adams ierr = MatZeroEntries(l->B);CHKERRQ(ierr); 7533fa6b06aSMark Adams 7543fa6b06aSMark Adams PetscFunctionReturn(0); 7553fa6b06aSMark Adams } 756fdc842d1SBarry Smith PetscErrorCode MatMultAdd_MPIAIJCUSPARSE(Mat A,Vec xx,Vec yy,Vec zz) 757fdc842d1SBarry Smith { 758fdc842d1SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ*)A->data; 759fdc842d1SBarry Smith PetscErrorCode ierr; 760fdc842d1SBarry Smith PetscInt nt; 761fdc842d1SBarry Smith 762fdc842d1SBarry Smith PetscFunctionBegin; 763fdc842d1SBarry Smith ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 764fdc842d1SBarry Smith if (nt != A->cmap->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A (%D) and xx (%D)",A->cmap->n,nt); 765fdc842d1SBarry Smith ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 7664d55d066SJunchao Zhang ierr = (*a->A->ops->multadd)(a->A,xx,yy,zz);CHKERRQ(ierr); 767fdc842d1SBarry Smith ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 768fdc842d1SBarry Smith ierr = (*a->B->ops->multadd)(a->B,a->lvec,zz,zz);CHKERRQ(ierr); 769fdc842d1SBarry Smith PetscFunctionReturn(0); 770fdc842d1SBarry Smith } 771fdc842d1SBarry Smith 772ca45077fSPaul Mullowney PetscErrorCode MatMultTranspose_MPIAIJCUSPARSE(Mat A,Vec xx,Vec yy) 773ca45077fSPaul Mullowney { 774ca45077fSPaul Mullowney Mat_MPIAIJ *a = (Mat_MPIAIJ*)A->data; 775ca45077fSPaul Mullowney PetscErrorCode ierr; 776ca45077fSPaul Mullowney PetscInt nt; 777ca45077fSPaul Mullowney 778ca45077fSPaul Mullowney PetscFunctionBegin; 779ca45077fSPaul Mullowney ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 780ccf5f80bSJunchao Zhang if (nt != A->rmap->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A (%D) and xx (%D)",A->rmap->n,nt); 7819b2db222SKarl Rupp ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 782ca45077fSPaul Mullowney ierr = (*a->A->ops->multtranspose)(a->A,xx,yy);CHKERRQ(ierr); 7839b2db222SKarl Rupp ierr = VecScatterBegin(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 7849b2db222SKarl Rupp ierr = VecScatterEnd(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 785ca45077fSPaul Mullowney PetscFunctionReturn(0); 786ca45077fSPaul Mullowney } 7879ae82921SPaul Mullowney 788e057df02SPaul Mullowney PetscErrorCode MatCUSPARSESetFormat_MPIAIJCUSPARSE(Mat A,MatCUSPARSEFormatOperation op,MatCUSPARSEStorageFormat format) 789ca45077fSPaul Mullowney { 790ca45077fSPaul Mullowney Mat_MPIAIJ *a = (Mat_MPIAIJ*)A->data; 791bbf3fe20SPaul Mullowney Mat_MPIAIJCUSPARSE * cusparseStruct = (Mat_MPIAIJCUSPARSE*)a->spptr; 792e057df02SPaul Mullowney 793ca45077fSPaul Mullowney PetscFunctionBegin; 794e057df02SPaul Mullowney switch (op) { 795e057df02SPaul Mullowney case MAT_CUSPARSE_MULT_DIAG: 796e057df02SPaul Mullowney cusparseStruct->diagGPUMatFormat = format; 797045c96e1SPaul Mullowney break; 798e057df02SPaul Mullowney case MAT_CUSPARSE_MULT_OFFDIAG: 799e057df02SPaul Mullowney cusparseStruct->offdiagGPUMatFormat = format; 800045c96e1SPaul Mullowney break; 801e057df02SPaul Mullowney case MAT_CUSPARSE_ALL: 802e057df02SPaul Mullowney cusparseStruct->diagGPUMatFormat = format; 803e057df02SPaul Mullowney cusparseStruct->offdiagGPUMatFormat = format; 804045c96e1SPaul Mullowney break; 805e057df02SPaul Mullowney default: 806e057df02SPaul Mullowney SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"unsupported operation %d for MatCUSPARSEFormatOperation. Only MAT_CUSPARSE_MULT_DIAG, MAT_CUSPARSE_MULT_DIAG, and MAT_CUSPARSE_MULT_ALL are currently supported.",op); 807045c96e1SPaul Mullowney } 808ca45077fSPaul Mullowney PetscFunctionReturn(0); 809ca45077fSPaul Mullowney } 810e057df02SPaul Mullowney 8114416b707SBarry Smith PetscErrorCode MatSetFromOptions_MPIAIJCUSPARSE(PetscOptionItems *PetscOptionsObject,Mat A) 812e057df02SPaul Mullowney { 813e057df02SPaul Mullowney MatCUSPARSEStorageFormat format; 814e057df02SPaul Mullowney PetscErrorCode ierr; 815e057df02SPaul Mullowney PetscBool flg; 816a183c035SDominic Meiser Mat_MPIAIJ *a = (Mat_MPIAIJ*)A->data; 817a183c035SDominic Meiser Mat_MPIAIJCUSPARSE *cusparseStruct = (Mat_MPIAIJCUSPARSE*)a->spptr; 8185fd66863SKarl Rupp 819e057df02SPaul Mullowney PetscFunctionBegin; 820e55864a3SBarry Smith ierr = PetscOptionsHead(PetscOptionsObject,"MPIAIJCUSPARSE options");CHKERRQ(ierr); 821e057df02SPaul Mullowney if (A->factortype==MAT_FACTOR_NONE) { 822e057df02SPaul Mullowney ierr = PetscOptionsEnum("-mat_cusparse_mult_diag_storage_format","sets storage format of the diagonal blocks of (mpi)aijcusparse gpu matrices for SpMV", 823a183c035SDominic Meiser "MatCUSPARSESetFormat",MatCUSPARSEStorageFormats,(PetscEnum)cusparseStruct->diagGPUMatFormat,(PetscEnum*)&format,&flg);CHKERRQ(ierr); 824e057df02SPaul Mullowney if (flg) { 825e057df02SPaul Mullowney ierr = MatCUSPARSESetFormat(A,MAT_CUSPARSE_MULT_DIAG,format);CHKERRQ(ierr); 826e057df02SPaul Mullowney } 827e057df02SPaul Mullowney ierr = PetscOptionsEnum("-mat_cusparse_mult_offdiag_storage_format","sets storage format of the off-diagonal blocks (mpi)aijcusparse gpu matrices for SpMV", 828a183c035SDominic Meiser "MatCUSPARSESetFormat",MatCUSPARSEStorageFormats,(PetscEnum)cusparseStruct->offdiagGPUMatFormat,(PetscEnum*)&format,&flg);CHKERRQ(ierr); 829e057df02SPaul Mullowney if (flg) { 830e057df02SPaul Mullowney ierr = MatCUSPARSESetFormat(A,MAT_CUSPARSE_MULT_OFFDIAG,format);CHKERRQ(ierr); 831e057df02SPaul Mullowney } 832e057df02SPaul Mullowney ierr = PetscOptionsEnum("-mat_cusparse_storage_format","sets storage format of the diagonal and off-diagonal blocks (mpi)aijcusparse gpu matrices for SpMV", 833a183c035SDominic Meiser "MatCUSPARSESetFormat",MatCUSPARSEStorageFormats,(PetscEnum)cusparseStruct->diagGPUMatFormat,(PetscEnum*)&format,&flg);CHKERRQ(ierr); 834e057df02SPaul Mullowney if (flg) { 835e057df02SPaul Mullowney ierr = MatCUSPARSESetFormat(A,MAT_CUSPARSE_ALL,format);CHKERRQ(ierr); 836e057df02SPaul Mullowney } 837e057df02SPaul Mullowney } 8380af67c1bSStefano Zampini ierr = PetscOptionsTail();CHKERRQ(ierr); 839e057df02SPaul Mullowney PetscFunctionReturn(0); 840e057df02SPaul Mullowney } 841e057df02SPaul Mullowney 84234d6c7a5SJose E. Roman PetscErrorCode MatAssemblyEnd_MPIAIJCUSPARSE(Mat A,MatAssemblyType mode) 84334d6c7a5SJose E. Roman { 84434d6c7a5SJose E. Roman PetscErrorCode ierr; 8453fa6b06aSMark Adams Mat_MPIAIJ *mpiaij = (Mat_MPIAIJ*)A->data; 8463fa6b06aSMark Adams Mat_MPIAIJCUSPARSE *cusparseStruct = (Mat_MPIAIJCUSPARSE*)mpiaij->spptr; 8473fa6b06aSMark Adams PetscSplitCSRDataStructure *d_mat = cusparseStruct->deviceMat; 84834d6c7a5SJose E. Roman PetscFunctionBegin; 84934d6c7a5SJose E. Roman ierr = MatAssemblyEnd_MPIAIJ(A,mode);CHKERRQ(ierr); 85034d6c7a5SJose E. Roman if (!A->was_assembled && mode == MAT_FINAL_ASSEMBLY) { 85134d6c7a5SJose E. Roman ierr = VecSetType(mpiaij->lvec,VECSEQCUDA);CHKERRQ(ierr); 85234d6c7a5SJose E. Roman } 853a587d139SMark if (d_mat) { 8543fa6b06aSMark Adams A->offloadmask = PETSC_OFFLOAD_GPU; // if we assembled on the device 8553fa6b06aSMark Adams } 8563fa6b06aSMark Adams 85734d6c7a5SJose E. Roman PetscFunctionReturn(0); 85834d6c7a5SJose E. Roman } 85934d6c7a5SJose E. Roman 860bbf3fe20SPaul Mullowney PetscErrorCode MatDestroy_MPIAIJCUSPARSE(Mat A) 861bbf3fe20SPaul Mullowney { 862bbf3fe20SPaul Mullowney PetscErrorCode ierr; 8633fa6b06aSMark Adams Mat_MPIAIJ *aij = (Mat_MPIAIJ*)A->data; 8643fa6b06aSMark Adams Mat_MPIAIJCUSPARSE *cusparseStruct = (Mat_MPIAIJCUSPARSE*)aij->spptr; 865b06137fdSPaul Mullowney cudaError_t err; 866b06137fdSPaul Mullowney cusparseStatus_t stat; 867bbf3fe20SPaul Mullowney 868bbf3fe20SPaul Mullowney PetscFunctionBegin; 869d98d7c49SStefano Zampini if (!cusparseStruct) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_COR,"Missing spptr"); 8703fa6b06aSMark Adams if (cusparseStruct->deviceMat) { 8713fa6b06aSMark Adams Mat_SeqAIJ *jaca = (Mat_SeqAIJ*)aij->A->data; 8723fa6b06aSMark Adams Mat_SeqAIJ *jacb = (Mat_SeqAIJ*)aij->B->data; 8733fa6b06aSMark Adams PetscSplitCSRDataStructure *d_mat = cusparseStruct->deviceMat, h_mat; 8743fa6b06aSMark Adams ierr = PetscInfo(A,"Have device matrix\n");CHKERRQ(ierr); 8753fa6b06aSMark Adams err = cudaMemcpy( &h_mat, d_mat, sizeof(PetscSplitCSRDataStructure), cudaMemcpyDeviceToHost);CHKERRCUDA(err); 8763fa6b06aSMark Adams if (jaca->compressedrow.use) { 8773fa6b06aSMark Adams err = cudaFree(h_mat.diag.i);CHKERRCUDA(err); 8783fa6b06aSMark Adams } 8793fa6b06aSMark Adams if (jacb->compressedrow.use) { 8803fa6b06aSMark Adams err = cudaFree(h_mat.offdiag.i);CHKERRCUDA(err); 8813fa6b06aSMark Adams } 8823fa6b06aSMark Adams err = cudaFree(h_mat.colmap);CHKERRCUDA(err); 8833fa6b06aSMark Adams err = cudaFree(d_mat);CHKERRCUDA(err); 8843fa6b06aSMark Adams } 885bbf3fe20SPaul Mullowney try { 8863fa6b06aSMark Adams if (aij->A) { ierr = MatCUSPARSEClearHandle(aij->A);CHKERRQ(ierr); } 8873fa6b06aSMark Adams if (aij->B) { ierr = MatCUSPARSEClearHandle(aij->B);CHKERRQ(ierr); } 88857d48284SJunchao Zhang stat = cusparseDestroy(cusparseStruct->handle);CHKERRCUSPARSE(stat); 88917403302SKarl Rupp if (cusparseStruct->stream) { 890c41cb2e2SAlejandro Lamas Daviña err = cudaStreamDestroy(cusparseStruct->stream);CHKERRCUDA(err); 89117403302SKarl Rupp } 8927e8381f9SStefano Zampini delete cusparseStruct->coo_p; 8937e8381f9SStefano Zampini delete cusparseStruct->coo_pw; 894bbf3fe20SPaul Mullowney delete cusparseStruct; 895bbf3fe20SPaul Mullowney } catch(char *ex) { 896bbf3fe20SPaul Mullowney SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_LIB,"Mat_MPIAIJCUSPARSE error: %s", ex); 897bbf3fe20SPaul Mullowney } 8983338378cSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)A,"MatMPIAIJSetPreallocation_C",NULL);CHKERRQ(ierr); 899ed502f03SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)A,"MatMPIAIJGetLocalMatMerge_C",NULL);CHKERRQ(ierr); 9007e8381f9SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)A,"MatSetPreallocationCOO_C",NULL);CHKERRQ(ierr); 9017e8381f9SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)A,"MatSetValuesCOO_C",NULL);CHKERRQ(ierr); 9023338378cSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)A,"MatCUSPARSESetFormat_C",NULL);CHKERRQ(ierr); 903bbf3fe20SPaul Mullowney ierr = MatDestroy_MPIAIJ(A);CHKERRQ(ierr); 904bbf3fe20SPaul Mullowney PetscFunctionReturn(0); 905bbf3fe20SPaul Mullowney } 906ca45077fSPaul Mullowney 9073338378cSStefano Zampini PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJCUSPARSE(Mat B, MatType mtype, MatReuse reuse, Mat* newmat) 9089ae82921SPaul Mullowney { 9099ae82921SPaul Mullowney PetscErrorCode ierr; 910bbf3fe20SPaul Mullowney Mat_MPIAIJ *a; 911bbf3fe20SPaul Mullowney Mat_MPIAIJCUSPARSE *cusparseStruct; 912b06137fdSPaul Mullowney cusparseStatus_t stat; 9133338378cSStefano Zampini Mat A; 9149ae82921SPaul Mullowney 9159ae82921SPaul Mullowney PetscFunctionBegin; 9163338378cSStefano Zampini if (reuse == MAT_INITIAL_MATRIX) { 9173338378cSStefano Zampini ierr = MatDuplicate(B,MAT_COPY_VALUES,newmat);CHKERRQ(ierr); 9183338378cSStefano Zampini } else if (reuse == MAT_REUSE_MATRIX) { 9193338378cSStefano Zampini ierr = MatCopy(B,*newmat,SAME_NONZERO_PATTERN);CHKERRQ(ierr); 9203338378cSStefano Zampini } 9213338378cSStefano Zampini A = *newmat; 9223338378cSStefano Zampini 92334136279SStefano Zampini ierr = PetscFree(A->defaultvectype);CHKERRQ(ierr); 92434136279SStefano Zampini ierr = PetscStrallocpy(VECCUDA,&A->defaultvectype);CHKERRQ(ierr); 92534136279SStefano Zampini 926bbf3fe20SPaul Mullowney a = (Mat_MPIAIJ*)A->data; 927d98d7c49SStefano Zampini if (a->A) { ierr = MatSetType(a->A,MATSEQAIJCUSPARSE);CHKERRQ(ierr); } 928d98d7c49SStefano Zampini if (a->B) { ierr = MatSetType(a->B,MATSEQAIJCUSPARSE);CHKERRQ(ierr); } 929d98d7c49SStefano Zampini if (a->lvec) { 930d98d7c49SStefano Zampini ierr = VecSetType(a->lvec,VECSEQCUDA);CHKERRQ(ierr); 931d98d7c49SStefano Zampini } 932d98d7c49SStefano Zampini 9333338378cSStefano Zampini if (reuse != MAT_REUSE_MATRIX && !a->spptr) { 934bbf3fe20SPaul Mullowney a->spptr = new Mat_MPIAIJCUSPARSE; 9352205254eSKarl Rupp 936bbf3fe20SPaul Mullowney cusparseStruct = (Mat_MPIAIJCUSPARSE*)a->spptr; 937e057df02SPaul Mullowney cusparseStruct->diagGPUMatFormat = MAT_CUSPARSE_CSR; 938e057df02SPaul Mullowney cusparseStruct->offdiagGPUMatFormat = MAT_CUSPARSE_CSR; 9397e8381f9SStefano Zampini cusparseStruct->coo_p = NULL; 9407e8381f9SStefano Zampini cusparseStruct->coo_pw = NULL; 94117403302SKarl Rupp cusparseStruct->stream = 0; 94257d48284SJunchao Zhang stat = cusparseCreate(&(cusparseStruct->handle));CHKERRCUSPARSE(stat); 9433fa6b06aSMark Adams cusparseStruct->deviceMat = NULL; 9443338378cSStefano Zampini } 9452205254eSKarl Rupp 94634d6c7a5SJose E. Roman A->ops->assemblyend = MatAssemblyEnd_MPIAIJCUSPARSE; 947bbf3fe20SPaul Mullowney A->ops->mult = MatMult_MPIAIJCUSPARSE; 948fdc842d1SBarry Smith A->ops->multadd = MatMultAdd_MPIAIJCUSPARSE; 949bbf3fe20SPaul Mullowney A->ops->multtranspose = MatMultTranspose_MPIAIJCUSPARSE; 950bbf3fe20SPaul Mullowney A->ops->setfromoptions = MatSetFromOptions_MPIAIJCUSPARSE; 951bbf3fe20SPaul Mullowney A->ops->destroy = MatDestroy_MPIAIJCUSPARSE; 9523fa6b06aSMark Adams A->ops->zeroentries = MatZeroEntries_MPIAIJCUSPARSE; 953*4eb5378fSStefano Zampini A->ops->productsetfromoptions = MatProductSetFromOptions_MPIAIJCUSPARSE; 9542205254eSKarl Rupp 955bbf3fe20SPaul Mullowney ierr = PetscObjectChangeTypeName((PetscObject)A,MATMPIAIJCUSPARSE);CHKERRQ(ierr); 956ed502f03SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)A,"MatMPIAIJGetLocalMatMerge_C",MatMPIAIJGetLocalMatMerge_MPIAIJCUSPARSE);CHKERRQ(ierr); 9573338378cSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)A,"MatMPIAIJSetPreallocation_C",MatMPIAIJSetPreallocation_MPIAIJCUSPARSE);CHKERRQ(ierr); 958bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)A,"MatCUSPARSESetFormat_C",MatCUSPARSESetFormat_MPIAIJCUSPARSE);CHKERRQ(ierr); 9597e8381f9SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)A,"MatSetPreallocationCOO_C",MatSetPreallocationCOO_MPIAIJCUSPARSE);CHKERRQ(ierr); 9607e8381f9SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)A,"MatSetValuesCOO_C",MatSetValuesCOO_MPIAIJCUSPARSE);CHKERRQ(ierr); 9619ae82921SPaul Mullowney PetscFunctionReturn(0); 9629ae82921SPaul Mullowney } 9639ae82921SPaul Mullowney 9643338378cSStefano Zampini PETSC_EXTERN PetscErrorCode MatCreate_MPIAIJCUSPARSE(Mat A) 9653338378cSStefano Zampini { 9663338378cSStefano Zampini PetscErrorCode ierr; 9673338378cSStefano Zampini 9683338378cSStefano Zampini PetscFunctionBegin; 96905035670SJunchao Zhang ierr = PetscCUDAInitializeCheck();CHKERRQ(ierr); 9703338378cSStefano Zampini ierr = MatCreate_MPIAIJ(A);CHKERRQ(ierr); 9713338378cSStefano Zampini ierr = MatConvert_MPIAIJ_MPIAIJCUSPARSE(A,MATMPIAIJCUSPARSE,MAT_INPLACE_MATRIX,&A);CHKERRQ(ierr); 9723338378cSStefano Zampini PetscFunctionReturn(0); 9733338378cSStefano Zampini } 9743338378cSStefano Zampini 9753f9c0db1SPaul Mullowney /*@ 9763f9c0db1SPaul Mullowney MatCreateAIJCUSPARSE - Creates a sparse matrix in AIJ (compressed row) format 977e057df02SPaul Mullowney (the default parallel PETSc format). This matrix will ultimately pushed down 9783f9c0db1SPaul Mullowney to NVidia GPUs and use the CUSPARSE library for calculations. For good matrix 979e057df02SPaul Mullowney assembly performance the user should preallocate the matrix storage by setting 980e057df02SPaul Mullowney the parameter nz (or the array nnz). By setting these parameters accurately, 981e057df02SPaul Mullowney performance during matrix assembly can be increased by more than a factor of 50. 9829ae82921SPaul Mullowney 983d083f849SBarry Smith Collective 984e057df02SPaul Mullowney 985e057df02SPaul Mullowney Input Parameters: 986e057df02SPaul Mullowney + comm - MPI communicator, set to PETSC_COMM_SELF 987e057df02SPaul Mullowney . m - number of rows 988e057df02SPaul Mullowney . n - number of columns 989e057df02SPaul Mullowney . nz - number of nonzeros per row (same for all rows) 990e057df02SPaul Mullowney - nnz - array containing the number of nonzeros in the various rows 9910298fd71SBarry Smith (possibly different for each row) or NULL 992e057df02SPaul Mullowney 993e057df02SPaul Mullowney Output Parameter: 994e057df02SPaul Mullowney . A - the matrix 995e057df02SPaul Mullowney 996e057df02SPaul Mullowney It is recommended that one use the MatCreate(), MatSetType() and/or MatSetFromOptions(), 997e057df02SPaul Mullowney MatXXXXSetPreallocation() paradigm instead of this routine directly. 998e057df02SPaul Mullowney [MatXXXXSetPreallocation() is, for example, MatSeqAIJSetPreallocation] 999e057df02SPaul Mullowney 1000e057df02SPaul Mullowney Notes: 1001e057df02SPaul Mullowney If nnz is given then nz is ignored 1002e057df02SPaul Mullowney 1003e057df02SPaul Mullowney The AIJ format (also called the Yale sparse matrix format or 1004e057df02SPaul Mullowney compressed row storage), is fully compatible with standard Fortran 77 1005e057df02SPaul Mullowney storage. That is, the stored row and column indices can begin at 1006e057df02SPaul Mullowney either one (as in Fortran) or zero. See the users' manual for details. 1007e057df02SPaul Mullowney 1008e057df02SPaul Mullowney Specify the preallocated storage with either nz or nnz (not both). 10090298fd71SBarry Smith Set nz=PETSC_DEFAULT and nnz=NULL for PETSc to control dynamic memory 1010e057df02SPaul Mullowney allocation. For large problems you MUST preallocate memory or you 1011e057df02SPaul Mullowney will get TERRIBLE performance, see the users' manual chapter on matrices. 1012e057df02SPaul Mullowney 1013e057df02SPaul Mullowney By default, this format uses inodes (identical nodes) when possible, to 1014e057df02SPaul Mullowney improve numerical efficiency of matrix-vector products and solves. We 1015e057df02SPaul Mullowney search for consecutive rows with the same nonzero structure, thereby 1016e057df02SPaul Mullowney reusing matrix information to achieve increased efficiency. 1017e057df02SPaul Mullowney 1018e057df02SPaul Mullowney Level: intermediate 1019e057df02SPaul Mullowney 1020e057df02SPaul Mullowney .seealso: MatCreate(), MatCreateAIJ(), MatSetValues(), MatSeqAIJSetColumnIndices(), MatCreateSeqAIJWithArrays(), MatCreateAIJ(), MATMPIAIJCUSPARSE, MATAIJCUSPARSE 1021e057df02SPaul Mullowney @*/ 10229ae82921SPaul Mullowney PetscErrorCode MatCreateAIJCUSPARSE(MPI_Comm comm,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[],Mat *A) 10239ae82921SPaul Mullowney { 10249ae82921SPaul Mullowney PetscErrorCode ierr; 10259ae82921SPaul Mullowney PetscMPIInt size; 10269ae82921SPaul Mullowney 10279ae82921SPaul Mullowney PetscFunctionBegin; 10289ae82921SPaul Mullowney ierr = MatCreate(comm,A);CHKERRQ(ierr); 10299ae82921SPaul Mullowney ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr); 1030ffc4695bSBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRMPI(ierr); 10319ae82921SPaul Mullowney if (size > 1) { 10329ae82921SPaul Mullowney ierr = MatSetType(*A,MATMPIAIJCUSPARSE);CHKERRQ(ierr); 10339ae82921SPaul Mullowney ierr = MatMPIAIJSetPreallocation(*A,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr); 10349ae82921SPaul Mullowney } else { 10359ae82921SPaul Mullowney ierr = MatSetType(*A,MATSEQAIJCUSPARSE);CHKERRQ(ierr); 10369ae82921SPaul Mullowney ierr = MatSeqAIJSetPreallocation(*A,d_nz,d_nnz);CHKERRQ(ierr); 10379ae82921SPaul Mullowney } 10389ae82921SPaul Mullowney PetscFunctionReturn(0); 10399ae82921SPaul Mullowney } 10409ae82921SPaul Mullowney 10413ca39a21SBarry Smith /*MC 1042e057df02SPaul Mullowney MATAIJCUSPARSE - MATMPIAIJCUSPARSE = "aijcusparse" = "mpiaijcusparse" - A matrix type to be used for sparse matrices. 1043e057df02SPaul Mullowney 10442692e278SPaul Mullowney A matrix type type whose data resides on Nvidia GPUs. These matrices can be in either 10452692e278SPaul Mullowney CSR, ELL, or Hybrid format. The ELL and HYB formats require CUDA 4.2 or later. 10462692e278SPaul Mullowney All matrix calculations are performed on Nvidia GPUs using the CUSPARSE library. 10479ae82921SPaul Mullowney 10489ae82921SPaul Mullowney This matrix type is identical to MATSEQAIJCUSPARSE when constructed with a single process communicator, 10499ae82921SPaul Mullowney and MATMPIAIJCUSPARSE otherwise. As a result, for single process communicators, 10509ae82921SPaul Mullowney MatSeqAIJSetPreallocation is supported, and similarly MatMPIAIJSetPreallocation is supported 10519ae82921SPaul Mullowney for communicators controlling multiple processes. It is recommended that you call both of 10529ae82921SPaul Mullowney the above preallocation routines for simplicity. 10539ae82921SPaul Mullowney 10549ae82921SPaul Mullowney Options Database Keys: 1055e057df02SPaul Mullowney + -mat_type mpiaijcusparse - sets the matrix type to "mpiaijcusparse" during a call to MatSetFromOptions() 10568468deeeSKarl Rupp . -mat_cusparse_storage_format csr - sets the storage format of diagonal and off-diagonal matrices during a call to MatSetFromOptions(). Other options include ell (ellpack) or hyb (hybrid). 10578468deeeSKarl Rupp . -mat_cusparse_mult_diag_storage_format csr - sets the storage format of diagonal matrix during a call to MatSetFromOptions(). Other options include ell (ellpack) or hyb (hybrid). 10588468deeeSKarl Rupp - -mat_cusparse_mult_offdiag_storage_format csr - sets the storage format of off-diagonal matrix during a call to MatSetFromOptions(). Other options include ell (ellpack) or hyb (hybrid). 10599ae82921SPaul Mullowney 10609ae82921SPaul Mullowney Level: beginner 10619ae82921SPaul Mullowney 10628468deeeSKarl Rupp .seealso: MatCreateAIJCUSPARSE(), MATSEQAIJCUSPARSE, MatCreateSeqAIJCUSPARSE(), MatCUSPARSESetFormat(), MatCUSPARSEStorageFormat, MatCUSPARSEFormatOperation 10638468deeeSKarl Rupp M 10649ae82921SPaul Mullowney M*/ 10653fa6b06aSMark Adams 10663fa6b06aSMark Adams // get GPU pointer to stripped down Mat. For both Seq and MPI Mat. 10673fa6b06aSMark Adams PetscErrorCode MatCUSPARSEGetDeviceMatWrite(Mat A, PetscSplitCSRDataStructure **B) 10683fa6b06aSMark Adams { 10699db3cbf9SStefano Zampini #if defined(PETSC_USE_CTABLE) 10709db3cbf9SStefano Zampini SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_SUP,"Device metadata does not support ctable (--with-ctable=0)"); 10719db3cbf9SStefano Zampini #else 10723fa6b06aSMark Adams PetscSplitCSRDataStructure **p_d_mat; 10733fa6b06aSMark Adams PetscMPIInt size,rank; 10743fa6b06aSMark Adams MPI_Comm comm; 10753fa6b06aSMark Adams PetscErrorCode ierr; 10763fa6b06aSMark Adams int *ai,*bi,*aj,*bj; 10773fa6b06aSMark Adams PetscScalar *aa,*ba; 10783fa6b06aSMark Adams 10793fa6b06aSMark Adams PetscFunctionBegin; 10803fa6b06aSMark Adams ierr = PetscObjectGetComm((PetscObject)A,&comm);CHKERRQ(ierr); 1081ffc4695bSBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRMPI(ierr); 1082ffc4695bSBarry Smith ierr = MPI_Comm_rank(comm,&rank);CHKERRMPI(ierr); 10833fa6b06aSMark Adams if (A->factortype == MAT_FACTOR_NONE) { 10843fa6b06aSMark Adams CsrMatrix *matrixA,*matrixB=NULL; 10853fa6b06aSMark Adams if (size == 1) { 10863fa6b06aSMark Adams Mat_SeqAIJCUSPARSE *cusparsestruct = (Mat_SeqAIJCUSPARSE*)A->spptr; 10873fa6b06aSMark Adams p_d_mat = &cusparsestruct->deviceMat; 10883fa6b06aSMark Adams Mat_SeqAIJCUSPARSEMultStruct *matstruct = (Mat_SeqAIJCUSPARSEMultStruct*)cusparsestruct->mat; 10893fa6b06aSMark Adams if (cusparsestruct->format==MAT_CUSPARSE_CSR) { 10903fa6b06aSMark Adams matrixA = (CsrMatrix*)matstruct->mat; 10913fa6b06aSMark Adams bi = bj = NULL; ba = NULL; 10926b78a27eSPierre Jolivet } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Device Mat needs MAT_CUSPARSE_CSR"); 10933fa6b06aSMark Adams } else { 10943fa6b06aSMark Adams Mat_MPIAIJ *aij = (Mat_MPIAIJ*)A->data; 10953fa6b06aSMark Adams Mat_MPIAIJCUSPARSE *spptr = (Mat_MPIAIJCUSPARSE*)aij->spptr; 10963fa6b06aSMark Adams p_d_mat = &spptr->deviceMat; 10973fa6b06aSMark Adams Mat_SeqAIJCUSPARSE *cusparsestructA = (Mat_SeqAIJCUSPARSE*)aij->A->spptr; 10983fa6b06aSMark Adams Mat_SeqAIJCUSPARSE *cusparsestructB = (Mat_SeqAIJCUSPARSE*)aij->B->spptr; 10993fa6b06aSMark Adams Mat_SeqAIJCUSPARSEMultStruct *matstructA = (Mat_SeqAIJCUSPARSEMultStruct*)cusparsestructA->mat; 11003fa6b06aSMark Adams Mat_SeqAIJCUSPARSEMultStruct *matstructB = (Mat_SeqAIJCUSPARSEMultStruct*)cusparsestructB->mat; 11013fa6b06aSMark Adams if (cusparsestructA->format==MAT_CUSPARSE_CSR) { 11023fa6b06aSMark Adams if (cusparsestructB->format!=MAT_CUSPARSE_CSR) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Device Mat B needs MAT_CUSPARSE_CSR"); 11033fa6b06aSMark Adams matrixA = (CsrMatrix*)matstructA->mat; 11043fa6b06aSMark Adams matrixB = (CsrMatrix*)matstructB->mat; 11053fa6b06aSMark Adams bi = thrust::raw_pointer_cast(matrixB->row_offsets->data()); 11063fa6b06aSMark Adams bj = thrust::raw_pointer_cast(matrixB->column_indices->data()); 11073fa6b06aSMark Adams ba = thrust::raw_pointer_cast(matrixB->values->data()); 11086b78a27eSPierre Jolivet } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Device Mat A needs MAT_CUSPARSE_CSR"); 11093fa6b06aSMark Adams } 11103fa6b06aSMark Adams ai = thrust::raw_pointer_cast(matrixA->row_offsets->data()); 11113fa6b06aSMark Adams aj = thrust::raw_pointer_cast(matrixA->column_indices->data()); 11123fa6b06aSMark Adams aa = thrust::raw_pointer_cast(matrixA->values->data()); 11133fa6b06aSMark Adams } else { 11143fa6b06aSMark Adams *B = NULL; 11153fa6b06aSMark Adams PetscFunctionReturn(0); 11163fa6b06aSMark Adams } 11173fa6b06aSMark Adams // act like MatSetValues because not called on host 11183fa6b06aSMark Adams if (A->assembled) { 11193fa6b06aSMark Adams if (A->was_assembled) { 11203fa6b06aSMark Adams ierr = PetscInfo(A,"Assemble more than once already\n");CHKERRQ(ierr); 11213fa6b06aSMark Adams } 11223fa6b06aSMark Adams A->was_assembled = PETSC_TRUE; // this is done (lazy) in MatAssemble but we are not calling it anymore - done in AIJ AssemblyEnd, need here? 11233fa6b06aSMark Adams } else { 11243fa6b06aSMark Adams SETERRQ(comm,PETSC_ERR_SUP,"Need assemble matrix"); 11253fa6b06aSMark Adams } 11263fa6b06aSMark Adams if (!*p_d_mat) { 11273fa6b06aSMark Adams cudaError_t err; 11283fa6b06aSMark Adams PetscSplitCSRDataStructure *d_mat, h_mat; 11293fa6b06aSMark Adams Mat_SeqAIJ *jaca; 11303fa6b06aSMark Adams PetscInt n = A->rmap->n, nnz; 11313fa6b06aSMark Adams // create and copy 11323fa6b06aSMark Adams ierr = PetscInfo(A,"Create device matrix\n");CHKERRQ(ierr); 11333fa6b06aSMark Adams err = cudaMalloc((void **)&d_mat, sizeof(PetscSplitCSRDataStructure));CHKERRCUDA(err); 11343fa6b06aSMark Adams err = cudaMemset( d_mat, 0, sizeof(PetscSplitCSRDataStructure));CHKERRCUDA(err); 11353fa6b06aSMark Adams *B = *p_d_mat = d_mat; // return it, set it in Mat, and set it up 11363fa6b06aSMark Adams if (size == 1) { 11373fa6b06aSMark Adams jaca = (Mat_SeqAIJ*)A->data; 11383fa6b06aSMark Adams h_mat.rstart = 0; h_mat.rend = A->rmap->n; 11393fa6b06aSMark Adams h_mat.cstart = 0; h_mat.cend = A->cmap->n; 11403fa6b06aSMark Adams h_mat.offdiag.i = h_mat.offdiag.j = NULL; 11413fa6b06aSMark Adams h_mat.offdiag.a = NULL; 11423fa6b06aSMark Adams } else { 11433fa6b06aSMark Adams Mat_MPIAIJ *aij = (Mat_MPIAIJ*)A->data; 11443fa6b06aSMark Adams Mat_SeqAIJ *jacb; 11453fa6b06aSMark Adams jaca = (Mat_SeqAIJ*)aij->A->data; 11463fa6b06aSMark Adams jacb = (Mat_SeqAIJ*)aij->B->data; 11473fa6b06aSMark Adams if (!aij->garray) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"MPIAIJ Matrix was assembled but is missing garray"); 11483fa6b06aSMark Adams if (aij->B->rmap->n != aij->A->rmap->n) SETERRQ(comm,PETSC_ERR_SUP,"Only support aij->B->rmap->n == aij->A->rmap->n"); 11493fa6b06aSMark Adams // create colmap - this is ussually done (lazy) in MatSetValues 11503fa6b06aSMark Adams aij->donotstash = PETSC_TRUE; 11513fa6b06aSMark Adams aij->A->nooffprocentries = aij->B->nooffprocentries = A->nooffprocentries = PETSC_TRUE; 11523fa6b06aSMark Adams jaca->nonew = jacb->nonew = PETSC_TRUE; // no more dissassembly 11533fa6b06aSMark Adams ierr = PetscCalloc1(A->cmap->N+1,&aij->colmap);CHKERRQ(ierr); 11543fa6b06aSMark Adams aij->colmap[A->cmap->N] = -9; 11553fa6b06aSMark Adams ierr = PetscLogObjectMemory((PetscObject)A,(A->cmap->N+1)*sizeof(PetscInt));CHKERRQ(ierr); 11563fa6b06aSMark Adams { 11573fa6b06aSMark Adams PetscInt ii; 11583fa6b06aSMark Adams for (ii=0; ii<aij->B->cmap->n; ii++) aij->colmap[aij->garray[ii]] = ii+1; 11593fa6b06aSMark Adams } 11603fa6b06aSMark Adams if (aij->colmap[A->cmap->N] != -9) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"aij->colmap[A->cmap->N] != -9"); 11613fa6b06aSMark Adams // allocate B copy data 11623fa6b06aSMark Adams h_mat.rstart = A->rmap->rstart; h_mat.rend = A->rmap->rend; 11633fa6b06aSMark Adams h_mat.cstart = A->cmap->rstart; h_mat.cend = A->cmap->rend; 11643fa6b06aSMark Adams nnz = jacb->i[n]; 11653fa6b06aSMark Adams 11663fa6b06aSMark Adams if (jacb->compressedrow.use) { 11673fa6b06aSMark Adams err = cudaMalloc((void **)&h_mat.offdiag.i, (n+1)*sizeof(int));CHKERRCUDA(err); // kernel input 11683fa6b06aSMark Adams err = cudaMemcpy( h_mat.offdiag.i, jacb->i, (n+1)*sizeof(int), cudaMemcpyHostToDevice);CHKERRCUDA(err); 11696b78a27eSPierre Jolivet } else h_mat.offdiag.i = bi; 11703fa6b06aSMark Adams h_mat.offdiag.j = bj; 11713fa6b06aSMark Adams h_mat.offdiag.a = ba; 11723fa6b06aSMark Adams 11733fa6b06aSMark Adams err = cudaMalloc((void **)&h_mat.colmap, (A->cmap->N+1)*sizeof(PetscInt));CHKERRCUDA(err); // kernel output 11743fa6b06aSMark Adams err = cudaMemcpy( h_mat.colmap, aij->colmap, (A->cmap->N+1)*sizeof(PetscInt), cudaMemcpyHostToDevice);CHKERRCUDA(err); 11753fa6b06aSMark Adams h_mat.offdiag.ignorezeroentries = jacb->ignorezeroentries; 11763fa6b06aSMark Adams h_mat.offdiag.n = n; 11773fa6b06aSMark Adams } 11783fa6b06aSMark Adams // allocate A copy data 11793fa6b06aSMark Adams nnz = jaca->i[n]; 11803fa6b06aSMark Adams h_mat.diag.n = n; 11813fa6b06aSMark Adams h_mat.diag.ignorezeroentries = jaca->ignorezeroentries; 1182ffc4695bSBarry Smith ierr = MPI_Comm_rank(comm,&h_mat.rank);CHKERRMPI(ierr); 11833fa6b06aSMark Adams if (jaca->compressedrow.use) { 11843fa6b06aSMark Adams err = cudaMalloc((void **)&h_mat.diag.i, (n+1)*sizeof(int));CHKERRCUDA(err); // kernel input 11853fa6b06aSMark Adams err = cudaMemcpy( h_mat.diag.i, jaca->i, (n+1)*sizeof(int), cudaMemcpyHostToDevice);CHKERRCUDA(err); 11863fa6b06aSMark Adams } else { 11873fa6b06aSMark Adams h_mat.diag.i = ai; 11883fa6b06aSMark Adams } 11893fa6b06aSMark Adams h_mat.diag.j = aj; 11903fa6b06aSMark Adams h_mat.diag.a = aa; 11913fa6b06aSMark Adams // copy pointers and metdata to device 11923fa6b06aSMark Adams err = cudaMemcpy( d_mat, &h_mat, sizeof(PetscSplitCSRDataStructure), cudaMemcpyHostToDevice);CHKERRCUDA(err); 11933fa6b06aSMark Adams ierr = PetscInfo2(A,"Create device Mat n=%D nnz=%D\n",h_mat.diag.n, nnz);CHKERRQ(ierr); 11943fa6b06aSMark Adams } else { 11953fa6b06aSMark Adams *B = *p_d_mat; 11963fa6b06aSMark Adams } 11973fa6b06aSMark Adams A->assembled = PETSC_FALSE; // ready to write with matsetvalues - this done (lazy) in normal MatSetValues 11983fa6b06aSMark Adams PetscFunctionReturn(0); 11999db3cbf9SStefano Zampini #endif 12003fa6b06aSMark Adams } 1201