12327d61dSSatish Balay #include "petscconf.h" 22327d61dSSatish Balay PETSC_CUDA_EXTERN_C_BEGIN 39ae82921SPaul Mullowney #include <../src/mat/impls/aij/mpi/mpiaij.h> /*I "petscmat.h" I*/ 42327d61dSSatish Balay PETSC_CUDA_EXTERN_C_END 5bbf3fe20SPaul Mullowney #include "mpicusparsematimpl.h" 69ae82921SPaul Mullowney 79ae82921SPaul Mullowney #undef __FUNCT__ 89ae82921SPaul Mullowney #define __FUNCT__ "MatMPIAIJSetPreallocation_MPIAIJCUSPARSE" 99ae82921SPaul Mullowney PetscErrorCode MatMPIAIJSetPreallocation_MPIAIJCUSPARSE(Mat B,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[]) 109ae82921SPaul Mullowney { 11bbf3fe20SPaul Mullowney Mat_MPIAIJ *b = (Mat_MPIAIJ*)B->data; 12bbf3fe20SPaul Mullowney Mat_MPIAIJCUSPARSE * cusparseStruct = (Mat_MPIAIJCUSPARSE*)b->spptr; 139ae82921SPaul Mullowney PetscErrorCode ierr; 149ae82921SPaul Mullowney PetscInt i; 159ae82921SPaul Mullowney 169ae82921SPaul Mullowney PetscFunctionBegin; 179ae82921SPaul Mullowney if (d_nz == PETSC_DEFAULT || d_nz == PETSC_DECIDE) d_nz = 5; 189ae82921SPaul Mullowney if (o_nz == PETSC_DEFAULT || o_nz == PETSC_DECIDE) o_nz = 2; 199ae82921SPaul Mullowney if (d_nz < 0) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"d_nz cannot be less than 0: value %D",d_nz); 209ae82921SPaul Mullowney if (o_nz < 0) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"o_nz cannot be less than 0: value %D",o_nz); 219ae82921SPaul Mullowney 229ae82921SPaul Mullowney ierr = PetscLayoutSetBlockSize(B->rmap,1);CHKERRQ(ierr); 239ae82921SPaul Mullowney ierr = PetscLayoutSetBlockSize(B->cmap,1);CHKERRQ(ierr); 249ae82921SPaul Mullowney ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr); 259ae82921SPaul Mullowney ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr); 269ae82921SPaul Mullowney if (d_nnz) { 279ae82921SPaul Mullowney for (i=0; i<B->rmap->n; i++) { 289ae82921SPaul Mullowney if (d_nnz[i] < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"d_nnz cannot be less than 0: local row %D value %D",i,d_nnz[i]); 299ae82921SPaul Mullowney } 309ae82921SPaul Mullowney } 319ae82921SPaul Mullowney if (o_nnz) { 329ae82921SPaul Mullowney for (i=0; i<B->rmap->n; i++) { 339ae82921SPaul Mullowney if (o_nnz[i] < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"o_nnz cannot be less than 0: local row %D value %D",i,o_nnz[i]); 349ae82921SPaul Mullowney } 359ae82921SPaul Mullowney } 369ae82921SPaul Mullowney if (!B->preallocated) { 37bbf3fe20SPaul Mullowney /* Explicitly create 2 MATSEQAIJCUSPARSE matrices. */ 389ae82921SPaul Mullowney ierr = MatCreate(PETSC_COMM_SELF,&b->A);CHKERRQ(ierr); 399ae82921SPaul Mullowney ierr = MatSetSizes(b->A,B->rmap->n,B->cmap->n,B->rmap->n,B->cmap->n);CHKERRQ(ierr); 409ae82921SPaul Mullowney ierr = MatSetType(b->A,MATSEQAIJCUSPARSE);CHKERRQ(ierr); 419ae82921SPaul Mullowney ierr = PetscLogObjectParent(B,b->A);CHKERRQ(ierr); 429ae82921SPaul Mullowney ierr = MatCreate(PETSC_COMM_SELF,&b->B);CHKERRQ(ierr); 439ae82921SPaul Mullowney ierr = MatSetSizes(b->B,B->rmap->n,B->cmap->N,B->rmap->n,B->cmap->N);CHKERRQ(ierr); 449ae82921SPaul Mullowney ierr = MatSetType(b->B,MATSEQAIJCUSPARSE);CHKERRQ(ierr); 459ae82921SPaul Mullowney ierr = PetscLogObjectParent(B,b->B);CHKERRQ(ierr); 469ae82921SPaul Mullowney } 479ae82921SPaul Mullowney ierr = MatSeqAIJSetPreallocation(b->A,d_nz,d_nnz);CHKERRQ(ierr); 489ae82921SPaul Mullowney ierr = MatSeqAIJSetPreallocation(b->B,o_nz,o_nnz);CHKERRQ(ierr); 49e057df02SPaul Mullowney ierr = MatCUSPARSESetFormat(b->A,MAT_CUSPARSE_MULT,cusparseStruct->diagGPUMatFormat);CHKERRQ(ierr); 50e057df02SPaul Mullowney ierr = MatCUSPARSESetFormat(b->B,MAT_CUSPARSE_MULT,cusparseStruct->offdiagGPUMatFormat);CHKERRQ(ierr); 512205254eSKarl Rupp 529ae82921SPaul Mullowney B->preallocated = PETSC_TRUE; 539ae82921SPaul Mullowney PetscFunctionReturn(0); 549ae82921SPaul Mullowney } 55e057df02SPaul Mullowney 569ae82921SPaul Mullowney #undef __FUNCT__ 579ae82921SPaul Mullowney #define __FUNCT__ "MatGetVecs_MPIAIJCUSPARSE" 589ae82921SPaul Mullowney PetscErrorCode MatGetVecs_MPIAIJCUSPARSE(Mat mat,Vec *right,Vec *left) 599ae82921SPaul Mullowney { 609ae82921SPaul Mullowney PetscErrorCode ierr; 619ae82921SPaul Mullowney 629ae82921SPaul Mullowney PetscFunctionBegin; 639ae82921SPaul Mullowney if (right) { 64ce94432eSBarry Smith ierr = VecCreate(PetscObjectComm((PetscObject)mat),right);CHKERRQ(ierr); 659ae82921SPaul Mullowney ierr = VecSetSizes(*right,mat->cmap->n,PETSC_DETERMINE);CHKERRQ(ierr); 669ae82921SPaul Mullowney ierr = VecSetBlockSize(*right,mat->rmap->bs);CHKERRQ(ierr); 679ae82921SPaul Mullowney ierr = VecSetType(*right,VECCUSP);CHKERRQ(ierr); 68cbf1f8acSSatish Balay ierr = VecSetLayout(*right,mat->cmap);CHKERRQ(ierr); 699ae82921SPaul Mullowney } 709ae82921SPaul Mullowney if (left) { 71ce94432eSBarry Smith ierr = VecCreate(PetscObjectComm((PetscObject)mat),left);CHKERRQ(ierr); 729ae82921SPaul Mullowney ierr = VecSetSizes(*left,mat->rmap->n,PETSC_DETERMINE);CHKERRQ(ierr); 739ae82921SPaul Mullowney ierr = VecSetBlockSize(*left,mat->rmap->bs);CHKERRQ(ierr); 749ae82921SPaul Mullowney ierr = VecSetType(*left,VECCUSP);CHKERRQ(ierr); 75cbf1f8acSSatish Balay ierr = VecSetLayout(*left,mat->rmap);CHKERRQ(ierr); 76cbf1f8acSSatish Balay 77cbf1f8acSSatish Balay 789ae82921SPaul Mullowney } 799ae82921SPaul Mullowney PetscFunctionReturn(0); 809ae82921SPaul Mullowney } 819ae82921SPaul Mullowney 829ae82921SPaul Mullowney 839ae82921SPaul Mullowney #undef __FUNCT__ 849ae82921SPaul Mullowney #define __FUNCT__ "MatMult_MPIAIJCUSPARSE" 859ae82921SPaul Mullowney PetscErrorCode MatMult_MPIAIJCUSPARSE(Mat A,Vec xx,Vec yy) 869ae82921SPaul Mullowney { 87e057df02SPaul Mullowney /* This multiplication sequence is different sequence 88e057df02SPaul Mullowney than the CPU version. In particular, the diagonal block 89e057df02SPaul Mullowney multiplication kernel is launched in one stream. Then, 90e057df02SPaul Mullowney in a separate stream, the data transfers from DeviceToHost 91e057df02SPaul Mullowney (with MPI messaging in between), then HostToDevice are 92e057df02SPaul Mullowney launched. Once the data transfer stream is synchronized, 93e057df02SPaul Mullowney to ensure messaging is complete, the MatMultAdd kernel 94e057df02SPaul Mullowney is launched in the original (MatMult) stream to protect 95e057df02SPaul Mullowney against race conditions. 96e057df02SPaul Mullowney 97e057df02SPaul Mullowney This sequence should only be called for GPU computation. */ 989ae82921SPaul Mullowney Mat_MPIAIJ *a = (Mat_MPIAIJ*)A->data; 999ae82921SPaul Mullowney PetscErrorCode ierr; 1009ae82921SPaul Mullowney PetscInt nt; 1019ae82921SPaul Mullowney 1029ae82921SPaul Mullowney PetscFunctionBegin; 1039ae82921SPaul Mullowney ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 1049ae82921SPaul Mullowney if (nt != A->cmap->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A (%D) and xx (%D)",A->cmap->n,nt); 1059ae82921SPaul Mullowney ierr = VecScatterInitializeForGPU(a->Mvctx,xx,SCATTER_FORWARD);CHKERRQ(ierr); 1069ae82921SPaul Mullowney ierr = (*a->A->ops->mult)(a->A,xx,yy);CHKERRQ(ierr); 1079ae82921SPaul Mullowney ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1089ae82921SPaul Mullowney ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1099ae82921SPaul Mullowney ierr = (*a->B->ops->multadd)(a->B,a->lvec,yy,yy);CHKERRQ(ierr); 1109ae82921SPaul Mullowney ierr = VecScatterFinalizeForGPU(a->Mvctx);CHKERRQ(ierr); 1119ae82921SPaul Mullowney PetscFunctionReturn(0); 1129ae82921SPaul Mullowney } 113ca45077fSPaul Mullowney 114ca45077fSPaul Mullowney #undef __FUNCT__ 115ca45077fSPaul Mullowney #define __FUNCT__ "MatMult_MPIAIJCUSPARSE" 116ca45077fSPaul Mullowney PetscErrorCode MatMultTranspose_MPIAIJCUSPARSE(Mat A,Vec xx,Vec yy) 117ca45077fSPaul Mullowney { 118e057df02SPaul Mullowney /* This multiplication sequence is different sequence 119e057df02SPaul Mullowney than the CPU version. In particular, the diagonal block 120e057df02SPaul Mullowney multiplication kernel is launched in one stream. Then, 121e057df02SPaul Mullowney in a separate stream, the data transfers from DeviceToHost 122e057df02SPaul Mullowney (with MPI messaging in between), then HostToDevice are 123e057df02SPaul Mullowney launched. Once the data transfer stream is synchronized, 124e057df02SPaul Mullowney to ensure messaging is complete, the MatMultAdd kernel 125e057df02SPaul Mullowney is launched in the original (MatMult) stream to protect 126e057df02SPaul Mullowney against race conditions. 127e057df02SPaul Mullowney 128e057df02SPaul Mullowney This sequence should only be called for GPU computation. */ 129ca45077fSPaul Mullowney Mat_MPIAIJ *a = (Mat_MPIAIJ*)A->data; 130ca45077fSPaul Mullowney PetscErrorCode ierr; 131ca45077fSPaul Mullowney PetscInt nt; 132ca45077fSPaul Mullowney 133ca45077fSPaul Mullowney PetscFunctionBegin; 134ca45077fSPaul Mullowney ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 135ca45077fSPaul Mullowney if (nt != A->cmap->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A (%D) and xx (%D)",A->cmap->n,nt); 136ca45077fSPaul Mullowney ierr = VecScatterInitializeForGPU(a->Mvctx,xx,SCATTER_FORWARD);CHKERRQ(ierr); 137ca45077fSPaul Mullowney ierr = (*a->A->ops->multtranspose)(a->A,xx,yy);CHKERRQ(ierr); 138ca45077fSPaul Mullowney ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 139ca45077fSPaul Mullowney ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 140ca45077fSPaul Mullowney ierr = (*a->B->ops->multtransposeadd)(a->B,a->lvec,yy,yy);CHKERRQ(ierr); 141ca45077fSPaul Mullowney ierr = VecScatterFinalizeForGPU(a->Mvctx);CHKERRQ(ierr); 142ca45077fSPaul Mullowney PetscFunctionReturn(0); 143ca45077fSPaul Mullowney } 1449ae82921SPaul Mullowney 145ca45077fSPaul Mullowney #undef __FUNCT__ 146e057df02SPaul Mullowney #define __FUNCT__ "MatCUSPARSESetFormat_MPIAIJCUSPARSE" 147e057df02SPaul Mullowney PetscErrorCode MatCUSPARSESetFormat_MPIAIJCUSPARSE(Mat A,MatCUSPARSEFormatOperation op,MatCUSPARSEStorageFormat format) 148ca45077fSPaul Mullowney { 149ca45077fSPaul Mullowney Mat_MPIAIJ *a = (Mat_MPIAIJ*)A->data; 150bbf3fe20SPaul Mullowney Mat_MPIAIJCUSPARSE * cusparseStruct = (Mat_MPIAIJCUSPARSE*)a->spptr; 151e057df02SPaul Mullowney 152ca45077fSPaul Mullowney PetscFunctionBegin; 153e057df02SPaul Mullowney switch (op) { 154e057df02SPaul Mullowney case MAT_CUSPARSE_MULT_DIAG: 155e057df02SPaul Mullowney cusparseStruct->diagGPUMatFormat = format; 156045c96e1SPaul Mullowney break; 157e057df02SPaul Mullowney case MAT_CUSPARSE_MULT_OFFDIAG: 158e057df02SPaul Mullowney cusparseStruct->offdiagGPUMatFormat = format; 159045c96e1SPaul Mullowney break; 160e057df02SPaul Mullowney case MAT_CUSPARSE_ALL: 161e057df02SPaul Mullowney cusparseStruct->diagGPUMatFormat = format; 162e057df02SPaul Mullowney cusparseStruct->offdiagGPUMatFormat = format; 163045c96e1SPaul Mullowney break; 164e057df02SPaul Mullowney default: 165e057df02SPaul Mullowney SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"unsupported operation %d for MatCUSPARSEFormatOperation. Only MAT_CUSPARSE_MULT_DIAG, MAT_CUSPARSE_MULT_DIAG, and MAT_CUSPARSE_MULT_ALL are currently supported.",op); 166045c96e1SPaul Mullowney } 167ca45077fSPaul Mullowney PetscFunctionReturn(0); 168ca45077fSPaul Mullowney } 169e057df02SPaul Mullowney 170e057df02SPaul Mullowney #undef __FUNCT__ 171e057df02SPaul Mullowney #define __FUNCT__ "MatSetFromOptions_MPIAIJCUSPARSE" 172e057df02SPaul Mullowney PetscErrorCode MatSetFromOptions_MPIAIJCUSPARSE(Mat A) 173e057df02SPaul Mullowney { 174e057df02SPaul Mullowney MatCUSPARSEStorageFormat format; 175e057df02SPaul Mullowney PetscErrorCode ierr; 176e057df02SPaul Mullowney PetscBool flg; 1775fd66863SKarl Rupp 178e057df02SPaul Mullowney PetscFunctionBegin; 179e057df02SPaul Mullowney ierr = PetscOptionsHead("MPIAIJCUSPARSE options");CHKERRQ(ierr); 180e057df02SPaul Mullowney ierr = PetscObjectOptionsBegin((PetscObject)A); 181e057df02SPaul Mullowney if (A->factortype==MAT_FACTOR_NONE) { 182e057df02SPaul Mullowney ierr = PetscOptionsEnum("-mat_cusparse_mult_diag_storage_format","sets storage format of the diagonal blocks of (mpi)aijcusparse gpu matrices for SpMV", 1837083f85cSSatish Balay "MatCUSPARSESetFormat",MatCUSPARSEStorageFormats,(PetscEnum)MAT_CUSPARSE_CSR,(PetscEnum*)&format,&flg);CHKERRQ(ierr); 184e057df02SPaul Mullowney if (flg) { 185e057df02SPaul Mullowney ierr = MatCUSPARSESetFormat(A,MAT_CUSPARSE_MULT_DIAG,format);CHKERRQ(ierr); 186e057df02SPaul Mullowney } 187e057df02SPaul Mullowney ierr = PetscOptionsEnum("-mat_cusparse_mult_offdiag_storage_format","sets storage format of the off-diagonal blocks (mpi)aijcusparse gpu matrices for SpMV", 1887083f85cSSatish Balay "MatCUSPARSESetFormat",MatCUSPARSEStorageFormats,(PetscEnum)MAT_CUSPARSE_CSR,(PetscEnum*)&format,&flg);CHKERRQ(ierr); 189e057df02SPaul Mullowney if (flg) { 190e057df02SPaul Mullowney ierr = MatCUSPARSESetFormat(A,MAT_CUSPARSE_MULT_OFFDIAG,format);CHKERRQ(ierr); 191e057df02SPaul Mullowney } 192e057df02SPaul Mullowney ierr = PetscOptionsEnum("-mat_cusparse_storage_format","sets storage format of the diagonal and off-diagonal blocks (mpi)aijcusparse gpu matrices for SpMV", 1937083f85cSSatish Balay "MatCUSPARSESetFormat",MatCUSPARSEStorageFormats,(PetscEnum)MAT_CUSPARSE_CSR,(PetscEnum*)&format,&flg);CHKERRQ(ierr); 194e057df02SPaul Mullowney if (flg) { 195e057df02SPaul Mullowney ierr = MatCUSPARSESetFormat(A,MAT_CUSPARSE_ALL,format);CHKERRQ(ierr); 196e057df02SPaul Mullowney } 197e057df02SPaul Mullowney } 198e057df02SPaul Mullowney ierr = PetscOptionsEnd();CHKERRQ(ierr); 199e057df02SPaul Mullowney PetscFunctionReturn(0); 200e057df02SPaul Mullowney } 201e057df02SPaul Mullowney 202bbf3fe20SPaul Mullowney #undef __FUNCT__ 203bbf3fe20SPaul Mullowney #define __FUNCT__ "MatDestroy_MPIAIJCUSPARSE" 204bbf3fe20SPaul Mullowney PetscErrorCode MatDestroy_MPIAIJCUSPARSE(Mat A) 205bbf3fe20SPaul Mullowney { 206bbf3fe20SPaul Mullowney PetscErrorCode ierr; 207bbf3fe20SPaul Mullowney Mat_MPIAIJ *a = (Mat_MPIAIJ*)A->data; 208bbf3fe20SPaul Mullowney Mat_MPIAIJCUSPARSE *cusparseStruct = (Mat_MPIAIJCUSPARSE*)a->spptr; 209bbf3fe20SPaul Mullowney 210bbf3fe20SPaul Mullowney PetscFunctionBegin; 211bbf3fe20SPaul Mullowney try { 212bbf3fe20SPaul Mullowney delete cusparseStruct; 213bbf3fe20SPaul Mullowney } catch(char *ex) { 214bbf3fe20SPaul Mullowney SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_LIB,"Mat_MPIAIJCUSPARSE error: %s", ex); 215bbf3fe20SPaul Mullowney } 216bbf3fe20SPaul Mullowney cusparseStruct = 0; 2172205254eSKarl Rupp 218bbf3fe20SPaul Mullowney ierr = MatDestroy_MPIAIJ(A);CHKERRQ(ierr); 219bbf3fe20SPaul Mullowney PetscFunctionReturn(0); 220bbf3fe20SPaul Mullowney } 221ca45077fSPaul Mullowney 2229ae82921SPaul Mullowney #undef __FUNCT__ 2239ae82921SPaul Mullowney #define __FUNCT__ "MatCreate_MPIAIJCUSPARSE" 224*8cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatCreate_MPIAIJCUSPARSE(Mat A) 2259ae82921SPaul Mullowney { 2269ae82921SPaul Mullowney PetscErrorCode ierr; 227bbf3fe20SPaul Mullowney Mat_MPIAIJ *a; 228bbf3fe20SPaul Mullowney Mat_MPIAIJCUSPARSE * cusparseStruct; 2299ae82921SPaul Mullowney 2309ae82921SPaul Mullowney PetscFunctionBegin; 231bbf3fe20SPaul Mullowney ierr = MatCreate_MPIAIJ(A);CHKERRQ(ierr); 23200de8ff0SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)A,"MatMPIAIJSetPreallocation_C","MatMPIAIJSetPreallocation_MPIAIJCUSPARSE",MatMPIAIJSetPreallocation_MPIAIJCUSPARSE);CHKERRQ(ierr); 233bbf3fe20SPaul Mullowney a = (Mat_MPIAIJ*)A->data; 234bbf3fe20SPaul Mullowney a->spptr = new Mat_MPIAIJCUSPARSE; 2352205254eSKarl Rupp 236bbf3fe20SPaul Mullowney cusparseStruct = (Mat_MPIAIJCUSPARSE*)a->spptr; 237e057df02SPaul Mullowney cusparseStruct->diagGPUMatFormat = MAT_CUSPARSE_CSR; 238e057df02SPaul Mullowney cusparseStruct->offdiagGPUMatFormat = MAT_CUSPARSE_CSR; 2392205254eSKarl Rupp 240bbf3fe20SPaul Mullowney A->ops->getvecs = MatGetVecs_MPIAIJCUSPARSE; 241bbf3fe20SPaul Mullowney A->ops->mult = MatMult_MPIAIJCUSPARSE; 242bbf3fe20SPaul Mullowney A->ops->multtranspose = MatMultTranspose_MPIAIJCUSPARSE; 243bbf3fe20SPaul Mullowney A->ops->setfromoptions = MatSetFromOptions_MPIAIJCUSPARSE; 244bbf3fe20SPaul Mullowney A->ops->destroy = MatDestroy_MPIAIJCUSPARSE; 2452205254eSKarl Rupp 246bbf3fe20SPaul Mullowney ierr = PetscObjectChangeTypeName((PetscObject)A,MATMPIAIJCUSPARSE);CHKERRQ(ierr); 24700de8ff0SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)A,"MatCUSPARSESetFormat_C", "MatCUSPARSESetFormat_MPIAIJCUSPARSE", MatCUSPARSESetFormat_MPIAIJCUSPARSE);CHKERRQ(ierr); 2489ae82921SPaul Mullowney PetscFunctionReturn(0); 2499ae82921SPaul Mullowney } 2509ae82921SPaul Mullowney 2513f9c0db1SPaul Mullowney /*@ 2523f9c0db1SPaul Mullowney MatCreateAIJCUSPARSE - Creates a sparse matrix in AIJ (compressed row) format 253e057df02SPaul Mullowney (the default parallel PETSc format). This matrix will ultimately pushed down 2543f9c0db1SPaul Mullowney to NVidia GPUs and use the CUSPARSE library for calculations. For good matrix 255e057df02SPaul Mullowney assembly performance the user should preallocate the matrix storage by setting 256e057df02SPaul Mullowney the parameter nz (or the array nnz). By setting these parameters accurately, 257e057df02SPaul Mullowney performance during matrix assembly can be increased by more than a factor of 50. 258e057df02SPaul Mullowney This type is only available when using the 'txpetscgpu' package. Use --download-txpetscgpu 259e057df02SPaul Mullowney to build/install PETSc to use different CUSPARSE base matrix types. 2609ae82921SPaul Mullowney 261e057df02SPaul Mullowney Collective on MPI_Comm 262e057df02SPaul Mullowney 263e057df02SPaul Mullowney Input Parameters: 264e057df02SPaul Mullowney + comm - MPI communicator, set to PETSC_COMM_SELF 265e057df02SPaul Mullowney . m - number of rows 266e057df02SPaul Mullowney . n - number of columns 267e057df02SPaul Mullowney . nz - number of nonzeros per row (same for all rows) 268e057df02SPaul Mullowney - nnz - array containing the number of nonzeros in the various rows 2690298fd71SBarry Smith (possibly different for each row) or NULL 270e057df02SPaul Mullowney 271e057df02SPaul Mullowney Output Parameter: 272e057df02SPaul Mullowney . A - the matrix 273e057df02SPaul Mullowney 274e057df02SPaul Mullowney It is recommended that one use the MatCreate(), MatSetType() and/or MatSetFromOptions(), 275e057df02SPaul Mullowney MatXXXXSetPreallocation() paradigm instead of this routine directly. 276e057df02SPaul Mullowney [MatXXXXSetPreallocation() is, for example, MatSeqAIJSetPreallocation] 277e057df02SPaul Mullowney 278e057df02SPaul Mullowney Notes: 279e057df02SPaul Mullowney If nnz is given then nz is ignored 280e057df02SPaul Mullowney 281e057df02SPaul Mullowney The AIJ format (also called the Yale sparse matrix format or 282e057df02SPaul Mullowney compressed row storage), is fully compatible with standard Fortran 77 283e057df02SPaul Mullowney storage. That is, the stored row and column indices can begin at 284e057df02SPaul Mullowney either one (as in Fortran) or zero. See the users' manual for details. 285e057df02SPaul Mullowney 286e057df02SPaul Mullowney Specify the preallocated storage with either nz or nnz (not both). 2870298fd71SBarry Smith Set nz=PETSC_DEFAULT and nnz=NULL for PETSc to control dynamic memory 288e057df02SPaul Mullowney allocation. For large problems you MUST preallocate memory or you 289e057df02SPaul Mullowney will get TERRIBLE performance, see the users' manual chapter on matrices. 290e057df02SPaul Mullowney 291e057df02SPaul Mullowney By default, this format uses inodes (identical nodes) when possible, to 292e057df02SPaul Mullowney improve numerical efficiency of matrix-vector products and solves. We 293e057df02SPaul Mullowney search for consecutive rows with the same nonzero structure, thereby 294e057df02SPaul Mullowney reusing matrix information to achieve increased efficiency. 295e057df02SPaul Mullowney 296e057df02SPaul Mullowney Level: intermediate 297e057df02SPaul Mullowney 298e057df02SPaul Mullowney .seealso: MatCreate(), MatCreateAIJ(), MatSetValues(), MatSeqAIJSetColumnIndices(), MatCreateSeqAIJWithArrays(), MatCreateAIJ(), MATMPIAIJCUSPARSE, MATAIJCUSPARSE 299e057df02SPaul Mullowney @*/ 3009ae82921SPaul Mullowney #undef __FUNCT__ 3019ae82921SPaul Mullowney #define __FUNCT__ "MatCreateAIJCUSPARSE" 3029ae82921SPaul Mullowney PetscErrorCode MatCreateAIJCUSPARSE(MPI_Comm comm,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[],Mat *A) 3039ae82921SPaul Mullowney { 3049ae82921SPaul Mullowney PetscErrorCode ierr; 3059ae82921SPaul Mullowney PetscMPIInt size; 3069ae82921SPaul Mullowney 3079ae82921SPaul Mullowney PetscFunctionBegin; 3089ae82921SPaul Mullowney ierr = MatCreate(comm,A);CHKERRQ(ierr); 3099ae82921SPaul Mullowney ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr); 3109ae82921SPaul Mullowney ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 3119ae82921SPaul Mullowney if (size > 1) { 3129ae82921SPaul Mullowney ierr = MatSetType(*A,MATMPIAIJCUSPARSE);CHKERRQ(ierr); 3139ae82921SPaul Mullowney ierr = MatMPIAIJSetPreallocation(*A,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr); 3149ae82921SPaul Mullowney } else { 3159ae82921SPaul Mullowney ierr = MatSetType(*A,MATSEQAIJCUSPARSE);CHKERRQ(ierr); 3169ae82921SPaul Mullowney ierr = MatSeqAIJSetPreallocation(*A,d_nz,d_nnz);CHKERRQ(ierr); 3179ae82921SPaul Mullowney } 3189ae82921SPaul Mullowney PetscFunctionReturn(0); 3199ae82921SPaul Mullowney } 3209ae82921SPaul Mullowney 3213f9c0db1SPaul Mullowney /*M 322e057df02SPaul Mullowney MATAIJCUSPARSE - MATMPIAIJCUSPARSE = "aijcusparse" = "mpiaijcusparse" - A matrix type to be used for sparse matrices. 323e057df02SPaul Mullowney 324e057df02SPaul Mullowney A matrix type type whose data resides on Nvidia GPUs. These matrices can be in CSR format. 3258468deeeSKarl Rupp All matrix calculations are performed using the Nvidia CUSPARSE library. Use of the 326e057df02SPaul Mullowney CUSPARSE library REQUIRES the 'txpetscgpu' package. ELL and HYB formats are also available 327e057df02SPaul Mullowney in the txpetscgpu package. Use --download-txpetscgpu to build/install PETSc to use different 328e057df02SPaul Mullowney GPU storage formats with CUSPARSE matrix types. 3299ae82921SPaul Mullowney 3309ae82921SPaul Mullowney This matrix type is identical to MATSEQAIJCUSPARSE when constructed with a single process communicator, 3319ae82921SPaul Mullowney and MATMPIAIJCUSPARSE otherwise. As a result, for single process communicators, 3329ae82921SPaul Mullowney MatSeqAIJSetPreallocation is supported, and similarly MatMPIAIJSetPreallocation is supported 3339ae82921SPaul Mullowney for communicators controlling multiple processes. It is recommended that you call both of 3349ae82921SPaul Mullowney the above preallocation routines for simplicity. 3359ae82921SPaul Mullowney 3369ae82921SPaul Mullowney Options Database Keys: 337e057df02SPaul Mullowney + -mat_type mpiaijcusparse - sets the matrix type to "mpiaijcusparse" during a call to MatSetFromOptions() 3388468deeeSKarl Rupp . -mat_cusparse_storage_format csr - sets the storage format of diagonal and off-diagonal matrices during a call to MatSetFromOptions(). Other options include ell (ellpack) or hyb (hybrid). 3398468deeeSKarl Rupp . -mat_cusparse_mult_diag_storage_format csr - sets the storage format of diagonal matrix during a call to MatSetFromOptions(). Other options include ell (ellpack) or hyb (hybrid). 3408468deeeSKarl Rupp - -mat_cusparse_mult_offdiag_storage_format csr - sets the storage format of off-diagonal matrix during a call to MatSetFromOptions(). Other options include ell (ellpack) or hyb (hybrid). 3419ae82921SPaul Mullowney 3429ae82921SPaul Mullowney Level: beginner 3439ae82921SPaul Mullowney 3448468deeeSKarl Rupp .seealso: MatCreateAIJCUSPARSE(), MATSEQAIJCUSPARSE, MatCreateSeqAIJCUSPARSE(), MatCUSPARSESetFormat(), MatCUSPARSEStorageFormat, MatCUSPARSEFormatOperation 3458468deeeSKarl Rupp M 3469ae82921SPaul Mullowney M*/ 347