12499ec78SHong Zhang /*
22499ec78SHong Zhang Defines matrix-matrix product routines for pairs of MPIAIJ matrices
32499ec78SHong Zhang C = A * B
42499ec78SHong Zhang */
5c6db04a5SJed Brown #include <../src/mat/impls/aij/seq/aij.h> /*I "petscmat.h" I*/
6c6db04a5SJed Brown #include <../src/mat/utils/freespace.h>
7c6db04a5SJed Brown #include <../src/mat/impls/aij/mpi/mpiaij.h>
8c6db04a5SJed Brown #include <petscbt.h>
9c6db04a5SJed Brown #include <../src/mat/impls/dense/mpi/mpidense.h>
10af0996ceSBarry Smith #include <petsc/private/vecimpl.h>
1197929ea7SJunchao Zhang #include <petsc/private/sfimpl.h>
121634b032SHong Zhang
135e5acdf2Sstefano_zampini #if defined(PETSC_HAVE_HYPRE)
144222ddf1SHong Zhang PETSC_INTERN PetscErrorCode MatMatMultSymbolic_AIJ_AIJ_wHYPRE(Mat, Mat, PetscReal, Mat);
155e5acdf2Sstefano_zampini #endif
165e5acdf2Sstefano_zampini
MatProductSymbolic_ABt_MPIAIJ_MPIAIJ(Mat C)17d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatProductSymbolic_ABt_MPIAIJ_MPIAIJ(Mat C)
18d71ae5a4SJacob Faibussowitsch {
198a9c020eSBarry Smith Mat_Product *product = C->product;
208a9c020eSBarry Smith Mat B = product->B;
218a9c020eSBarry Smith
228a9c020eSBarry Smith PetscFunctionBegin;
238a9c020eSBarry Smith PetscCall(MatTranspose(B, MAT_INITIAL_MATRIX, &product->B));
248a9c020eSBarry Smith PetscCall(MatDestroy(&B));
258a9c020eSBarry Smith PetscCall(MatProductSymbolic_AB_MPIAIJ_MPIAIJ(C));
263ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS);
278a9c020eSBarry Smith }
288a9c020eSBarry Smith
MatProductSymbolic_AB_MPIAIJ_MPIAIJ(Mat C)29d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatProductSymbolic_AB_MPIAIJ_MPIAIJ(Mat C)
30d71ae5a4SJacob Faibussowitsch {
314222ddf1SHong Zhang Mat_Product *product = C->product;
324222ddf1SHong Zhang Mat A = product->A, B = product->B;
334222ddf1SHong Zhang MatProductAlgorithm alg = product->alg;
344222ddf1SHong Zhang PetscReal fill = product->fill;
355e68f438SHong Zhang PetscBool flg;
362499ec78SHong Zhang
372499ec78SHong Zhang PetscFunctionBegin;
384222ddf1SHong Zhang /* scalable */
399566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(alg, "scalable", &flg));
404222ddf1SHong Zhang if (flg) {
419566063dSJacob Faibussowitsch PetscCall(MatMatMultSymbolic_MPIAIJ_MPIAIJ(A, B, fill, C));
423ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS);
430fc8cf34SHong Zhang }
447d0a89b7SHong Zhang
454222ddf1SHong Zhang /* nonscalable */
469566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(alg, "nonscalable", &flg));
474222ddf1SHong Zhang if (flg) {
489566063dSJacob Faibussowitsch PetscCall(MatMatMultSymbolic_MPIAIJ_MPIAIJ_nonscalable(A, B, fill, C));
493ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS);
504222ddf1SHong Zhang }
514222ddf1SHong Zhang
524222ddf1SHong Zhang /* seqmpi */
539566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(alg, "seqmpi", &flg));
544222ddf1SHong Zhang if (flg) {
559566063dSJacob Faibussowitsch PetscCall(MatMatMultSymbolic_MPIAIJ_MPIAIJ_seqMPI(A, B, fill, C));
563ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS);
574222ddf1SHong Zhang }
584222ddf1SHong Zhang
594e84afc0SStefano Zampini /* backend general code */
609566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(alg, "backend", &flg));
614e84afc0SStefano Zampini if (flg) {
629566063dSJacob Faibussowitsch PetscCall(MatProductSymbolic_MPIAIJBACKEND(C));
633ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS);
644e84afc0SStefano Zampini }
654e84afc0SStefano Zampini
664222ddf1SHong Zhang #if defined(PETSC_HAVE_HYPRE)
679566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(alg, "hypre", &flg));
684222ddf1SHong Zhang if (flg) {
699566063dSJacob Faibussowitsch PetscCall(MatMatMultSymbolic_AIJ_AIJ_wHYPRE(A, B, fill, C));
703ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS);
714222ddf1SHong Zhang }
724222ddf1SHong Zhang #endif
734222ddf1SHong Zhang SETERRQ(PetscObjectComm((PetscObject)C), PETSC_ERR_SUP, "Mat Product Algorithm is not supported");
742499ec78SHong Zhang }
752499ec78SHong Zhang
MatProductCtxDestroy_MPIAIJ_MatMatMult(PetscCtxRt data)762a8381b2SBarry Smith PetscErrorCode MatProductCtxDestroy_MPIAIJ_MatMatMult(PetscCtxRt data)
77d71ae5a4SJacob Faibussowitsch {
78cc1eb50dSBarry Smith MatProductCtx_APMPI *ptap = *(MatProductCtx_APMPI **)data;
79598bc09dSHong Zhang
80598bc09dSHong Zhang PetscFunctionBegin;
819566063dSJacob Faibussowitsch PetscCall(PetscFree2(ptap->startsj_s, ptap->startsj_r));
829566063dSJacob Faibussowitsch PetscCall(PetscFree(ptap->bufa));
839566063dSJacob Faibussowitsch PetscCall(MatDestroy(&ptap->P_loc));
849566063dSJacob Faibussowitsch PetscCall(MatDestroy(&ptap->P_oth));
859566063dSJacob Faibussowitsch PetscCall(MatDestroy(&ptap->Pt));
869566063dSJacob Faibussowitsch PetscCall(PetscFree(ptap->api));
879566063dSJacob Faibussowitsch PetscCall(PetscFree(ptap->apj));
889566063dSJacob Faibussowitsch PetscCall(PetscFree(ptap->apa));
899566063dSJacob Faibussowitsch PetscCall(PetscFree(ptap));
903ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS);
91598bc09dSHong Zhang }
92598bc09dSHong Zhang
MatMatMultNumeric_MPIAIJ_MPIAIJ_nonscalable(Mat A,Mat P,Mat C)93d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMatMultNumeric_MPIAIJ_MPIAIJ_nonscalable(Mat A, Mat P, Mat C)
94d71ae5a4SJacob Faibussowitsch {
954ae0847bSHong Zhang Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data, *c = (Mat_MPIAIJ *)C->data;
96f4f49eeaSPierre Jolivet Mat_SeqAIJ *ad = (Mat_SeqAIJ *)a->A->data, *ao = (Mat_SeqAIJ *)a->B->data;
97f4f49eeaSPierre Jolivet Mat_SeqAIJ *cd = (Mat_SeqAIJ *)c->A->data, *co = (Mat_SeqAIJ *)c->B->data;
9899aa8e07SJunchao Zhang PetscScalar *cda, *coa;
99598bc09dSHong Zhang Mat_SeqAIJ *p_loc, *p_oth;
1009ce11a7cSHong Zhang PetscScalar *apa, *ca;
101c12557a1SHong Zhang PetscInt cm = C->rmap->n;
102cc1eb50dSBarry Smith MatProductCtx_APMPI *ptap;
103c12557a1SHong Zhang PetscInt *api, *apj, *apJ, i, k;
10429825010SHong Zhang PetscInt cstart = C->cmap->rstart;
105598bc09dSHong Zhang PetscInt cdnz, conz, k0, k1;
10699aa8e07SJunchao Zhang const PetscScalar *dummy1, *dummy2, *dummy3, *dummy4;
1079467f45fSHong Zhang MPI_Comm comm;
1089467f45fSHong Zhang PetscMPIInt size;
109598bc09dSHong Zhang
110598bc09dSHong Zhang PetscFunctionBegin;
1116718818eSStefano Zampini MatCheckProduct(C, 3);
112cc1eb50dSBarry Smith ptap = (MatProductCtx_APMPI *)C->product->data;
11328b400f6SJacob Faibussowitsch PetscCheck(ptap, PetscObjectComm((PetscObject)C), PETSC_ERR_ARG_WRONGSTATE, "PtAP cannot be computed. Missing data");
1149566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)A, &comm));
1159566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size));
116aed4548fSBarry Smith PetscCheck(ptap->P_oth || size <= 1, PetscObjectComm((PetscObject)C), PETSC_ERR_ARG_WRONGSTATE, "AP cannot be reused. Do not call MatProductClear()");
11780da8df7SHong Zhang
11865e4b4d4SStefano Zampini /* flag CPU mask for C */
11965e4b4d4SStefano Zampini #if defined(PETSC_HAVE_DEVICE)
12065e4b4d4SStefano Zampini if (C->offloadmask != PETSC_OFFLOAD_UNALLOCATED) C->offloadmask = PETSC_OFFLOAD_CPU;
12165e4b4d4SStefano Zampini if (c->A->offloadmask != PETSC_OFFLOAD_UNALLOCATED) c->A->offloadmask = PETSC_OFFLOAD_CPU;
12265e4b4d4SStefano Zampini if (c->B->offloadmask != PETSC_OFFLOAD_UNALLOCATED) c->B->offloadmask = PETSC_OFFLOAD_CPU;
12365e4b4d4SStefano Zampini #endif
12465e4b4d4SStefano Zampini
125a1a4e84aSHong Zhang /* 1) get P_oth = ptap->P_oth and P_loc = ptap->P_loc */
126a1a4e84aSHong Zhang /* update numerical values of P_oth and P_loc */
1279566063dSJacob Faibussowitsch PetscCall(MatGetBrowsOfAoCols_MPIAIJ(A, P, MAT_REUSE_MATRIX, &ptap->startsj_s, &ptap->startsj_r, &ptap->bufa, &ptap->P_oth));
1289566063dSJacob Faibussowitsch PetscCall(MatMPIAIJGetLocalMat(P, MAT_REUSE_MATRIX, &ptap->P_loc));
129598bc09dSHong Zhang
130598bc09dSHong Zhang /* 2) compute numeric C_loc = A_loc*P = Ad*P_loc + Ao*P_oth */
131598bc09dSHong Zhang /* get data from symbolic products */
132f4f49eeaSPierre Jolivet p_loc = (Mat_SeqAIJ *)ptap->P_loc->data;
133c12557a1SHong Zhang p_oth = NULL;
134f4f49eeaSPierre Jolivet if (size > 1) p_oth = (Mat_SeqAIJ *)ptap->P_oth->data;
135598bc09dSHong Zhang
136598bc09dSHong Zhang /* get apa for storing dense row A[i,:]*P */
137598bc09dSHong Zhang apa = ptap->apa;
138598bc09dSHong Zhang
13929825010SHong Zhang api = ptap->api;
14029825010SHong Zhang apj = ptap->apj;
141ce496241SStefano Zampini /* trigger copy to CPU */
14299aa8e07SJunchao Zhang PetscCall(MatSeqAIJGetArrayRead(a->A, &dummy1));
14399aa8e07SJunchao Zhang PetscCall(MatSeqAIJGetArrayRead(a->B, &dummy2));
14499aa8e07SJunchao Zhang PetscCall(MatSeqAIJGetArrayRead(ptap->P_loc, &dummy3));
14599aa8e07SJunchao Zhang if (ptap->P_oth) PetscCall(MatSeqAIJGetArrayRead(ptap->P_oth, &dummy4));
14699aa8e07SJunchao Zhang PetscCall(MatSeqAIJGetArrayWrite(c->A, &cda));
14799aa8e07SJunchao Zhang PetscCall(MatSeqAIJGetArrayWrite(c->B, &coa));
148598bc09dSHong Zhang for (i = 0; i < cm; i++) {
149c12557a1SHong Zhang /* compute apa = A[i,:]*P */
150e497d3c8SHong Zhang AProw_nonscalable(i, ad, ao, p_loc, p_oth, apa);
151598bc09dSHong Zhang
152598bc09dSHong Zhang /* set values in C */
153216f1e5cSPierre Jolivet apJ = PetscSafePointerPlusOffset(apj, api[i]);
154598bc09dSHong Zhang cdnz = cd->i[i + 1] - cd->i[i];
155598bc09dSHong Zhang conz = co->i[i + 1] - co->i[i];
156598bc09dSHong Zhang
157910cf402Sprj- /* 1st off-diagonal part of C */
1588e3a54c0SPierre Jolivet ca = PetscSafePointerPlusOffset(coa, co->i[i]);
159598bc09dSHong Zhang k = 0;
160598bc09dSHong Zhang for (k0 = 0; k0 < conz; k0++) {
161598bc09dSHong Zhang if (apJ[k] >= cstart) break;
162598bc09dSHong Zhang ca[k0] = apa[apJ[k]];
1635cab4f04SHong Zhang apa[apJ[k++]] = 0.0;
164598bc09dSHong Zhang }
165598bc09dSHong Zhang
166598bc09dSHong Zhang /* diagonal part of C */
1678e3a54c0SPierre Jolivet ca = PetscSafePointerPlusOffset(cda, cd->i[i]);
168598bc09dSHong Zhang for (k1 = 0; k1 < cdnz; k1++) {
169598bc09dSHong Zhang ca[k1] = apa[apJ[k]];
1705cab4f04SHong Zhang apa[apJ[k++]] = 0.0;
171598bc09dSHong Zhang }
172598bc09dSHong Zhang
173910cf402Sprj- /* 2nd off-diagonal part of C */
1748e3a54c0SPierre Jolivet ca = PetscSafePointerPlusOffset(coa, co->i[i]);
175598bc09dSHong Zhang for (; k0 < conz; k0++) {
176598bc09dSHong Zhang ca[k0] = apa[apJ[k]];
1775cab4f04SHong Zhang apa[apJ[k++]] = 0.0;
178598bc09dSHong Zhang }
179598bc09dSHong Zhang }
18099aa8e07SJunchao Zhang PetscCall(MatSeqAIJRestoreArrayRead(a->A, &dummy1));
18199aa8e07SJunchao Zhang PetscCall(MatSeqAIJRestoreArrayRead(a->B, &dummy2));
18299aa8e07SJunchao Zhang PetscCall(MatSeqAIJRestoreArrayRead(ptap->P_loc, &dummy3));
18399aa8e07SJunchao Zhang if (ptap->P_oth) PetscCall(MatSeqAIJRestoreArrayRead(ptap->P_oth, &dummy4));
18499aa8e07SJunchao Zhang PetscCall(MatSeqAIJRestoreArrayWrite(c->A, &cda));
18599aa8e07SJunchao Zhang PetscCall(MatSeqAIJRestoreArrayWrite(c->B, &coa));
18699aa8e07SJunchao Zhang
1879566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(C, MAT_FINAL_ASSEMBLY));
1889566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(C, MAT_FINAL_ASSEMBLY));
1893ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS);
190598bc09dSHong Zhang }
191598bc09dSHong Zhang
MatMatMultSymbolic_MPIAIJ_MPIAIJ_nonscalable(Mat A,Mat P,PetscReal fill,Mat C)192d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMatMultSymbolic_MPIAIJ_MPIAIJ_nonscalable(Mat A, Mat P, PetscReal fill, Mat C)
193d71ae5a4SJacob Faibussowitsch {
194ce94432eSBarry Smith MPI_Comm comm;
1959467f45fSHong Zhang PetscMPIInt size;
196cc1eb50dSBarry Smith MatProductCtx_APMPI *ptap;
1970298fd71SBarry Smith PetscFreeSpaceList free_space = NULL, current_space = NULL;
1986718818eSStefano Zampini Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
199f4f49eeaSPierre Jolivet Mat_SeqAIJ *ad = (Mat_SeqAIJ *)a->A->data, *ao = (Mat_SeqAIJ *)a->B->data, *p_loc, *p_oth;
2007dbaa2c6Sandi selinger PetscInt *pi_loc, *pj_loc, *pi_oth, *pj_oth, *dnz, *onz;
2014ae0847bSHong Zhang PetscInt *adi = ad->i, *adj = ad->j, *aoi = ao->i, *aoj = ao->j, rstart = A->rmap->rstart;
202d14fa243SHong Zhang PetscInt *lnk, i, pnz, row, *api, *apj, *Jptr, apnz, nspacedouble = 0, j, nzi;
2035cab4f04SHong Zhang PetscInt am = A->rmap->n, pN = P->cmap->N, pn = P->cmap->n, pm = P->rmap->n;
204598bc09dSHong Zhang PetscBT lnkbt;
205bfcd1a73SHong Zhang PetscReal afill;
206b92f168fSBarry Smith MatType mtype;
207598bc09dSHong Zhang
208598bc09dSHong Zhang PetscFunctionBegin;
2096718818eSStefano Zampini MatCheckProduct(C, 4);
21028b400f6SJacob Faibussowitsch PetscCheck(!C->product->data, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Extra product struct not empty");
2119566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)A, &comm));
2129566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size));
2139467f45fSHong Zhang
214cc1eb50dSBarry Smith /* create struct MatProductCtx_APMPI and attached it to C later */
2159566063dSJacob Faibussowitsch PetscCall(PetscNew(&ptap));
216598bc09dSHong Zhang
217598bc09dSHong Zhang /* get P_oth by taking rows of P (= non-zero cols of local A) from other processors */
2189566063dSJacob Faibussowitsch PetscCall(MatGetBrowsOfAoCols_MPIAIJ(A, P, MAT_INITIAL_MATRIX, &ptap->startsj_s, &ptap->startsj_r, &ptap->bufa, &ptap->P_oth));
21919f0e57aSHong Zhang
220598bc09dSHong Zhang /* get P_loc by taking all local rows of P */
2219566063dSJacob Faibussowitsch PetscCall(MatMPIAIJGetLocalMat(P, MAT_INITIAL_MATRIX, &ptap->P_loc));
222598bc09dSHong Zhang
223f4f49eeaSPierre Jolivet p_loc = (Mat_SeqAIJ *)ptap->P_loc->data;
2249371c9d4SSatish Balay pi_loc = p_loc->i;
2259371c9d4SSatish Balay pj_loc = p_loc->j;
2269467f45fSHong Zhang if (size > 1) {
227f4f49eeaSPierre Jolivet p_oth = (Mat_SeqAIJ *)ptap->P_oth->data;
2289371c9d4SSatish Balay pi_oth = p_oth->i;
2299371c9d4SSatish Balay pj_oth = p_oth->j;
23020e3dc75SHong Zhang } else {
23120e3dc75SHong Zhang p_oth = NULL;
2329371c9d4SSatish Balay pi_oth = NULL;
2339371c9d4SSatish Balay pj_oth = NULL;
2349467f45fSHong Zhang }
235598bc09dSHong Zhang
236598bc09dSHong Zhang /* first, compute symbolic AP = A_loc*P = A_diag*P_loc + A_off*P_oth */
23784648c2dSPierre Jolivet PetscCall(PetscMalloc1(am + 1, &api));
238a1a4e84aSHong Zhang ptap->api = api;
239598bc09dSHong Zhang api[0] = 0;
240598bc09dSHong Zhang
2415cab4f04SHong Zhang /* create and initialize a linked list */
2429566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedCreate(pN, pN, &lnk, &lnkbt));
243598bc09dSHong Zhang
244bfcd1a73SHong Zhang /* Initial FreeSpace size is fill*(nnz(A)+nnz(P)) */
2459566063dSJacob Faibussowitsch PetscCall(PetscFreeSpaceGet(PetscRealIntMultTruncate(fill, PetscIntSumTruncate(adi[am], PetscIntSumTruncate(aoi[am], pi_loc[pm]))), &free_space));
246598bc09dSHong Zhang current_space = free_space;
247598bc09dSHong Zhang
248d0609cedSBarry Smith MatPreallocateBegin(comm, am, pn, dnz, onz);
249598bc09dSHong Zhang for (i = 0; i < am; i++) {
250598bc09dSHong Zhang /* diagonal portion of A */
251598bc09dSHong Zhang nzi = adi[i + 1] - adi[i];
252598bc09dSHong Zhang for (j = 0; j < nzi; j++) {
253598bc09dSHong Zhang row = *adj++;
254598bc09dSHong Zhang pnz = pi_loc[row + 1] - pi_loc[row];
255598bc09dSHong Zhang Jptr = pj_loc + pi_loc[row];
256598bc09dSHong Zhang /* add non-zero cols of P into the sorted linked list lnk */
2579566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedAddSorted(pnz, Jptr, lnk, lnkbt));
258598bc09dSHong Zhang }
259598bc09dSHong Zhang /* off-diagonal portion of A */
260598bc09dSHong Zhang nzi = aoi[i + 1] - aoi[i];
261598bc09dSHong Zhang for (j = 0; j < nzi; j++) {
262598bc09dSHong Zhang row = *aoj++;
263598bc09dSHong Zhang pnz = pi_oth[row + 1] - pi_oth[row];
264598bc09dSHong Zhang Jptr = pj_oth + pi_oth[row];
2659566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedAddSorted(pnz, Jptr, lnk, lnkbt));
266598bc09dSHong Zhang }
2678c78258cSHong Zhang /* add possible missing diagonal entry */
2688c78258cSHong Zhang if (C->force_diagonals) {
2698c78258cSHong Zhang j = i + rstart; /* column index */
2709566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedAddSorted(1, &j, lnk, lnkbt));
2718c78258cSHong Zhang }
272598bc09dSHong Zhang
273d14fa243SHong Zhang apnz = lnk[0];
274598bc09dSHong Zhang api[i + 1] = api[i] + apnz;
275598bc09dSHong Zhang
276598bc09dSHong Zhang /* if free space is not available, double the total space in the list */
277598bc09dSHong Zhang if (current_space->local_remaining < apnz) {
2789566063dSJacob Faibussowitsch PetscCall(PetscFreeSpaceGet(PetscIntSumTruncate(apnz, current_space->total_array_size), ¤t_space));
279598bc09dSHong Zhang nspacedouble++;
280598bc09dSHong Zhang }
281598bc09dSHong Zhang
282598bc09dSHong Zhang /* Copy data into free space, then initialize lnk */
2839566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedClean(pN, apnz, current_space->array, lnk, lnkbt));
2849566063dSJacob Faibussowitsch PetscCall(MatPreallocateSet(i + rstart, apnz, current_space->array, dnz, onz));
2852205254eSKarl Rupp
286598bc09dSHong Zhang current_space->array += apnz;
287598bc09dSHong Zhang current_space->local_used += apnz;
288598bc09dSHong Zhang current_space->local_remaining -= apnz;
289598bc09dSHong Zhang }
290598bc09dSHong Zhang
291598bc09dSHong Zhang /* Allocate space for apj, initialize apj, and */
292598bc09dSHong Zhang /* destroy list of free space and other temporary array(s) */
29384648c2dSPierre Jolivet PetscCall(PetscMalloc1(api[am], &ptap->apj));
294a1a4e84aSHong Zhang apj = ptap->apj;
2959566063dSJacob Faibussowitsch PetscCall(PetscFreeSpaceContiguous(&free_space, ptap->apj));
2969566063dSJacob Faibussowitsch PetscCall(PetscLLDestroy(lnk, lnkbt));
297598bc09dSHong Zhang
298f84c536bSHong Zhang /* malloc apa to store dense row A[i,:]*P */
2999566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(pN, &ptap->apa));
300f84c536bSHong Zhang
3014222ddf1SHong Zhang /* set and assemble symbolic parallel matrix C */
3029566063dSJacob Faibussowitsch PetscCall(MatSetSizes(C, am, pn, PETSC_DETERMINE, PETSC_DETERMINE));
3039566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizesFromMats(C, A, P));
304a2f3521dSMark F. Adams
3059566063dSJacob Faibussowitsch PetscCall(MatGetType(A, &mtype));
3069566063dSJacob Faibussowitsch PetscCall(MatSetType(C, mtype));
3079566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(C, 0, dnz, 0, onz));
308d0609cedSBarry Smith MatPreallocateEnd(dnz, onz);
30917f75172Sandi selinger
3109566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIAIJ_CopyFromCSRFormat_Symbolic(C, apj, api));
311799b351eSPierre Jolivet PetscCall(MatSetOption(C, MAT_NO_OFF_PROC_ENTRIES, PETSC_TRUE));
3129566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(C, MAT_FINAL_ASSEMBLY));
3139566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(C, MAT_FINAL_ASSEMBLY));
3149566063dSJacob Faibussowitsch PetscCall(MatSetOption(C, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE));
315598bc09dSHong Zhang
3164222ddf1SHong Zhang C->ops->matmultnumeric = MatMatMultNumeric_MPIAIJ_MPIAIJ_nonscalable;
3174222ddf1SHong Zhang C->ops->productnumeric = MatProductNumeric_AB;
318598bc09dSHong Zhang
3194222ddf1SHong Zhang /* attach the supporting struct to C for reuse */
3206718818eSStefano Zampini C->product->data = ptap;
321cc1eb50dSBarry Smith C->product->destroy = MatProductCtxDestroy_MPIAIJ_MatMatMult;
322598bc09dSHong Zhang
323bfcd1a73SHong Zhang /* set MatInfo */
324118727c9SMark F. Adams afill = (PetscReal)api[am] / (adi[am] + aoi[am] + pi_loc[pm] + 1) + 1.e-5;
325bfcd1a73SHong Zhang if (afill < 1.0) afill = 1.0;
3264222ddf1SHong Zhang C->info.mallocs = nspacedouble;
3274222ddf1SHong Zhang C->info.fill_ratio_given = fill;
3284222ddf1SHong Zhang C->info.fill_ratio_needed = afill;
329bfcd1a73SHong Zhang
330bfcd1a73SHong Zhang #if defined(PETSC_USE_INFO)
331bfcd1a73SHong Zhang if (api[am]) {
3329566063dSJacob Faibussowitsch PetscCall(PetscInfo(C, "Reallocs %" PetscInt_FMT "; Fill ratio: given %g needed %g.\n", nspacedouble, (double)fill, (double)afill));
3339566063dSJacob Faibussowitsch PetscCall(PetscInfo(C, "Use MatMatMult(A,B,MatReuse,%g,&C) for best performance.;\n", (double)afill));
334bfcd1a73SHong Zhang } else {
3359566063dSJacob Faibussowitsch PetscCall(PetscInfo(C, "Empty matrix product\n"));
336bfcd1a73SHong Zhang }
337bfcd1a73SHong Zhang #endif
3383ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS);
339598bc09dSHong Zhang }
340598bc09dSHong Zhang
3416718818eSStefano Zampini static PetscErrorCode MatMatMultSymbolic_MPIAIJ_MPIDense(Mat, Mat, PetscReal, Mat);
3426718818eSStefano Zampini static PetscErrorCode MatMatMultNumeric_MPIAIJ_MPIDense(Mat, Mat, Mat);
3436718818eSStefano Zampini
MatProductSetFromOptions_MPIAIJ_MPIDense_AB(Mat C)344d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductSetFromOptions_MPIAIJ_MPIDense_AB(Mat C)
345d71ae5a4SJacob Faibussowitsch {
3464222ddf1SHong Zhang Mat_Product *product = C->product;
3474222ddf1SHong Zhang Mat A = product->A, B = product->B;
3489123193aSHong Zhang
3499123193aSHong Zhang PetscFunctionBegin;
3504222ddf1SHong Zhang if (A->cmap->rstart != B->rmap->rstart || A->cmap->rend != B->rmap->rend)
35198921bdaSJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, (%" PetscInt_FMT ", %" PetscInt_FMT ") != (%" PetscInt_FMT ",%" PetscInt_FMT ")", A->cmap->rstart, A->cmap->rend, B->rmap->rstart, B->rmap->rend);
3524222ddf1SHong Zhang
3534222ddf1SHong Zhang C->ops->matmultsymbolic = MatMatMultSymbolic_MPIAIJ_MPIDense;
3544222ddf1SHong Zhang C->ops->productsymbolic = MatProductSymbolic_AB;
3553ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS);
3569123193aSHong Zhang }
3572ef1f0ffSBarry Smith
MatProductSetFromOptions_MPIAIJ_MPIDense_AtB(Mat C)358d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductSetFromOptions_MPIAIJ_MPIDense_AtB(Mat C)
359d71ae5a4SJacob Faibussowitsch {
3604222ddf1SHong Zhang Mat_Product *product = C->product;
3614222ddf1SHong Zhang Mat A = product->A, B = product->B;
3624222ddf1SHong Zhang
3634222ddf1SHong Zhang PetscFunctionBegin;
3644222ddf1SHong Zhang if (A->rmap->rstart != B->rmap->rstart || A->rmap->rend != B->rmap->rend)
36598921bdaSJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, (%" PetscInt_FMT ", %" PetscInt_FMT ") != (%" PetscInt_FMT ",%" PetscInt_FMT ")", A->rmap->rstart, A->rmap->rend, B->rmap->rstart, B->rmap->rend);
3664222ddf1SHong Zhang
3674222ddf1SHong Zhang C->ops->transposematmultsymbolic = MatTransposeMatMultSymbolic_MPIAIJ_MPIDense;
3684222ddf1SHong Zhang C->ops->productsymbolic = MatProductSymbolic_AtB;
3693ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS);
3704222ddf1SHong Zhang }
3714222ddf1SHong Zhang
MatProductSetFromOptions_MPIAIJ_MPIDense(Mat C)372d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatProductSetFromOptions_MPIAIJ_MPIDense(Mat C)
373d71ae5a4SJacob Faibussowitsch {
3744222ddf1SHong Zhang Mat_Product *product = C->product;
3754222ddf1SHong Zhang
3764222ddf1SHong Zhang PetscFunctionBegin;
3774222ddf1SHong Zhang switch (product->type) {
378d71ae5a4SJacob Faibussowitsch case MATPRODUCT_AB:
379d71ae5a4SJacob Faibussowitsch PetscCall(MatProductSetFromOptions_MPIAIJ_MPIDense_AB(C));
380d71ae5a4SJacob Faibussowitsch break;
381d71ae5a4SJacob Faibussowitsch case MATPRODUCT_AtB:
382d71ae5a4SJacob Faibussowitsch PetscCall(MatProductSetFromOptions_MPIAIJ_MPIDense_AtB(C));
383d71ae5a4SJacob Faibussowitsch break;
384d71ae5a4SJacob Faibussowitsch default:
385d71ae5a4SJacob Faibussowitsch break;
3864222ddf1SHong Zhang }
3873ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS);
3884222ddf1SHong Zhang }
3899123193aSHong Zhang
3904324174eSBarry Smith typedef struct {
3915ea7661aSPierre Jolivet Mat workB, workB1;
3924324174eSBarry Smith MPI_Request *rwaits, *swaits;
39387753ddeSHong Zhang PetscInt nsends, nrecvs;
39487753ddeSHong Zhang MPI_Datatype *stype, *rtype;
3956718818eSStefano Zampini PetscInt blda;
3964324174eSBarry Smith } MPIAIJ_MPIDense;
3974324174eSBarry Smith
MatMPIAIJ_MPIDenseDestroy(PetscCtxRt ctx)3982a8381b2SBarry Smith static PetscErrorCode MatMPIAIJ_MPIDenseDestroy(PetscCtxRt ctx)
399d71ae5a4SJacob Faibussowitsch {
400cc1eb50dSBarry Smith MPIAIJ_MPIDense *contents = *(MPIAIJ_MPIDense **)ctx;
40187753ddeSHong Zhang PetscInt i;
4024324174eSBarry Smith
4034324174eSBarry Smith PetscFunctionBegin;
4049566063dSJacob Faibussowitsch PetscCall(MatDestroy(&contents->workB));
4059566063dSJacob Faibussowitsch PetscCall(MatDestroy(&contents->workB1));
40648a46eb9SPierre Jolivet for (i = 0; i < contents->nsends; i++) PetscCallMPI(MPI_Type_free(&contents->stype[i]));
40748a46eb9SPierre Jolivet for (i = 0; i < contents->nrecvs; i++) PetscCallMPI(MPI_Type_free(&contents->rtype[i]));
4089566063dSJacob Faibussowitsch PetscCall(PetscFree4(contents->stype, contents->rtype, contents->rwaits, contents->swaits));
4099566063dSJacob Faibussowitsch PetscCall(PetscFree(contents));
4103ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS);
4114324174eSBarry Smith }
4124324174eSBarry Smith
MatMatMultSymbolic_MPIAIJ_MPIDense(Mat A,Mat B,PetscReal fill,Mat C)413d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMatMultSymbolic_MPIAIJ_MPIDense(Mat A, Mat B, PetscReal fill, Mat C)
414d71ae5a4SJacob Faibussowitsch {
415f32d5d43SBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *)A->data;
4166497c311SBarry Smith PetscInt nz = aij->B->cmap->n, blda, m, M, n, N;
4174324174eSBarry Smith MPIAIJ_MPIDense *contents;
4184324174eSBarry Smith VecScatter ctx = aij->Mvctx;
4196497c311SBarry Smith PetscInt Am = A->rmap->n, Bm = B->rmap->n, BN = B->cmap->N, Bbn, Bbn1, bs, numBb;
42087753ddeSHong Zhang MPI_Comm comm;
42187753ddeSHong Zhang MPI_Datatype type1, *stype, *rtype;
42287753ddeSHong Zhang const PetscInt *sindices, *sstarts, *rstarts;
4236497c311SBarry Smith PetscMPIInt *disp, nsends, nrecvs, nrows_to, nrows_from;
4246718818eSStefano Zampini PetscBool cisdense;
4259123193aSHong Zhang
4269123193aSHong Zhang PetscFunctionBegin;
4276718818eSStefano Zampini MatCheckProduct(C, 4);
42828b400f6SJacob Faibussowitsch PetscCheck(!C->product->data, PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Product data not empty");
4299566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)A, &comm));
4309566063dSJacob Faibussowitsch PetscCall(PetscObjectBaseTypeCompare((PetscObject)C, MATMPIDENSE, &cisdense));
43148a46eb9SPierre Jolivet if (!cisdense) PetscCall(MatSetType(C, ((PetscObject)B)->type_name));
4329566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(C, &m, &n));
4339566063dSJacob Faibussowitsch PetscCall(MatGetSize(C, &M, &N));
43448a46eb9SPierre Jolivet if (m == PETSC_DECIDE || n == PETSC_DECIDE || M == PETSC_DECIDE || N == PETSC_DECIDE) PetscCall(MatSetSizes(C, Am, B->cmap->n, A->rmap->N, BN));
4359566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizesFromMats(C, A, B));
4369566063dSJacob Faibussowitsch PetscCall(MatSetUp(C));
4379566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(B, &blda));
4389566063dSJacob Faibussowitsch PetscCall(PetscNew(&contents));
4394324174eSBarry Smith
4409566063dSJacob Faibussowitsch PetscCall(VecScatterGetRemote_Private(ctx, PETSC_TRUE /*send*/, &nsends, &sstarts, &sindices, NULL, NULL));
4419566063dSJacob Faibussowitsch PetscCall(VecScatterGetRemoteOrdered_Private(ctx, PETSC_FALSE /*recv*/, &nrecvs, &rstarts, NULL, NULL, NULL));
44287753ddeSHong Zhang
44387753ddeSHong Zhang /* Create column block of B and C for memory scalability when BN is too large */
44487753ddeSHong Zhang /* Estimate Bbn, column size of Bb */
44587753ddeSHong Zhang if (nz) {
44687753ddeSHong Zhang Bbn1 = 2 * Am * BN / nz;
447da7cbbe7SHong Zhang if (!Bbn1) Bbn1 = 1;
44887753ddeSHong Zhang } else Bbn1 = BN;
44987753ddeSHong Zhang
45058b7e2c1SStefano Zampini bs = B->cmap->bs;
45187753ddeSHong Zhang Bbn1 = Bbn1 / bs * bs; /* Bbn1 is a multiple of bs */
45287753ddeSHong Zhang if (Bbn1 > BN) Bbn1 = BN;
453462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&Bbn1, &Bbn, 1, MPIU_INT, MPI_MAX, comm));
45487753ddeSHong Zhang
45587753ddeSHong Zhang /* Enable runtime option for Bbn */
4561e2d28a0SPierre Jolivet PetscOptionsBegin(comm, ((PetscObject)C)->prefix, "MatProduct", "Mat");
4571e2d28a0SPierre Jolivet PetscCall(PetscOptionsDeprecated("-matmatmult_Bbn", "-matproduct_batch_size", "3.25", NULL));
4581e2d28a0SPierre Jolivet PetscCall(PetscOptionsInt("-matproduct_batch_size", "Number of columns in Bb", "MatProduct", Bbn, &Bbn, NULL));
459d0609cedSBarry Smith PetscOptionsEnd();
4606718818eSStefano Zampini Bbn = PetscMin(Bbn, BN);
46187753ddeSHong Zhang
4626718818eSStefano Zampini if (Bbn > 0 && Bbn < BN) {
4635ea7661aSPierre Jolivet numBb = BN / Bbn;
4645ea7661aSPierre Jolivet Bbn1 = BN - numBb * Bbn;
4655ea7661aSPierre Jolivet } else numBb = 0;
46687753ddeSHong Zhang
4675ea7661aSPierre Jolivet if (numBb) {
4689566063dSJacob Faibussowitsch PetscCall(PetscInfo(C, "use Bb, BN=%" PetscInt_FMT ", Bbn=%" PetscInt_FMT "; numBb=%" PetscInt_FMT "\n", BN, Bbn, numBb));
4695ea7661aSPierre Jolivet if (Bbn1) { /* Create workB1 for the remaining columns */
4709566063dSJacob Faibussowitsch PetscCall(PetscInfo(C, "use Bb1, BN=%" PetscInt_FMT ", Bbn1=%" PetscInt_FMT "\n", BN, Bbn1));
47187753ddeSHong Zhang /* Create work matrix used to store off processor rows of B needed for local product */
4729566063dSJacob Faibussowitsch PetscCall(MatCreateSeqDense(PETSC_COMM_SELF, nz, Bbn1, NULL, &contents->workB1));
4735ea7661aSPierre Jolivet } else contents->workB1 = NULL;
47487753ddeSHong Zhang }
47587753ddeSHong Zhang
47687753ddeSHong Zhang /* Create work matrix used to store off processor rows of B needed for local product */
4779566063dSJacob Faibussowitsch PetscCall(MatCreateSeqDense(PETSC_COMM_SELF, nz, Bbn, NULL, &contents->workB));
47887753ddeSHong Zhang
47987753ddeSHong Zhang /* Use MPI derived data type to reduce memory required by the send/recv buffers */
4809566063dSJacob Faibussowitsch PetscCall(PetscMalloc4(nsends, &stype, nrecvs, &rtype, nrecvs, &contents->rwaits, nsends, &contents->swaits));
48187753ddeSHong Zhang contents->stype = stype;
48287753ddeSHong Zhang contents->nsends = nsends;
48387753ddeSHong Zhang
48487753ddeSHong Zhang contents->rtype = rtype;
48587753ddeSHong Zhang contents->nrecvs = nrecvs;
4866718818eSStefano Zampini contents->blda = blda;
48787753ddeSHong Zhang
488*703c9151SPierre Jolivet PetscCall(PetscMalloc1(Bm, &disp));
4896497c311SBarry Smith for (PetscMPIInt i = 0; i < nsends; i++) {
4906497c311SBarry Smith PetscCall(PetscMPIIntCast(sstarts[i + 1] - sstarts[i], &nrows_to));
4916497c311SBarry Smith for (PetscInt j = 0; j < nrows_to; j++) PetscCall(PetscMPIIntCast(sindices[sstarts[i] + j], &disp[j])); /* rowB to be sent */
4929566063dSJacob Faibussowitsch PetscCallMPI(MPI_Type_create_indexed_block(nrows_to, 1, disp, MPIU_SCALAR, &type1));
4939566063dSJacob Faibussowitsch PetscCallMPI(MPI_Type_create_resized(type1, 0, blda * sizeof(PetscScalar), &stype[i]));
4949566063dSJacob Faibussowitsch PetscCallMPI(MPI_Type_commit(&stype[i]));
4959566063dSJacob Faibussowitsch PetscCallMPI(MPI_Type_free(&type1));
49687753ddeSHong Zhang }
49787753ddeSHong Zhang
4986497c311SBarry Smith for (PetscMPIInt i = 0; i < nrecvs; i++) {
49987753ddeSHong Zhang /* received values from a process form a (nrows_from x Bbn) row block in workB (column-wise) */
5006497c311SBarry Smith PetscCall(PetscMPIIntCast(rstarts[i + 1] - rstarts[i], &nrows_from));
50187753ddeSHong Zhang disp[0] = 0;
5029566063dSJacob Faibussowitsch PetscCallMPI(MPI_Type_create_indexed_block(1, nrows_from, disp, MPIU_SCALAR, &type1));
5039566063dSJacob Faibussowitsch PetscCallMPI(MPI_Type_create_resized(type1, 0, nz * sizeof(PetscScalar), &rtype[i]));
5049566063dSJacob Faibussowitsch PetscCallMPI(MPI_Type_commit(&rtype[i]));
5059566063dSJacob Faibussowitsch PetscCallMPI(MPI_Type_free(&type1));
50687753ddeSHong Zhang }
50787753ddeSHong Zhang
5089566063dSJacob Faibussowitsch PetscCall(PetscFree(disp));
5099566063dSJacob Faibussowitsch PetscCall(VecScatterRestoreRemote_Private(ctx, PETSC_TRUE /*send*/, &nsends, &sstarts, &sindices, NULL, NULL));
5109566063dSJacob Faibussowitsch PetscCall(VecScatterRestoreRemoteOrdered_Private(ctx, PETSC_FALSE /*recv*/, &nrecvs, &rstarts, NULL, NULL, NULL));
5119566063dSJacob Faibussowitsch PetscCall(MatSetOption(C, MAT_NO_OFF_PROC_ENTRIES, PETSC_TRUE));
5129566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(C, MAT_FINAL_ASSEMBLY));
5139566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(C, MAT_FINAL_ASSEMBLY));
514*703c9151SPierre Jolivet PetscCall(MatProductClear(aij->A));
515*703c9151SPierre Jolivet PetscCall(MatProductClear(((Mat_MPIDense *)B->data)->A));
516*703c9151SPierre Jolivet PetscCall(MatProductClear(((Mat_MPIDense *)C->data)->A));
517*703c9151SPierre Jolivet PetscCall(MatProductCreateWithMat(aij->A, ((Mat_MPIDense *)B->data)->A, NULL, ((Mat_MPIDense *)C->data)->A));
518*703c9151SPierre Jolivet PetscCall(MatProductSetType(((Mat_MPIDense *)C->data)->A, MATPRODUCT_AB));
519*703c9151SPierre Jolivet PetscCall(MatProductSetFromOptions(((Mat_MPIDense *)C->data)->A));
520*703c9151SPierre Jolivet PetscCall(MatProductSymbolic(((Mat_MPIDense *)C->data)->A));
5216718818eSStefano Zampini C->product->data = contents;
5226718818eSStefano Zampini C->product->destroy = MatMPIAIJ_MPIDenseDestroy;
5234222ddf1SHong Zhang C->ops->matmultnumeric = MatMatMultNumeric_MPIAIJ_MPIDense;
5243ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS);
5259123193aSHong Zhang }
5269123193aSHong Zhang
52793aa15f2SStefano Zampini PETSC_INTERN PetscErrorCode MatMatMultNumericAdd_SeqAIJ_SeqDense(Mat, Mat, Mat, const PetscBool);
5289612af27SStefano Zampini
529f32d5d43SBarry Smith /*
5302636ff26SBarry Smith Performs an efficient scatter on the rows of B needed by this process; this is
5312636ff26SBarry Smith a modification of the VecScatterBegin_() routines.
53287753ddeSHong Zhang
5339612af27SStefano Zampini Input: If Bbidx = 0, uses B = Bb, else B = Bb1, see MatMatMultSymbolic_MPIAIJ_MPIDense()
534f32d5d43SBarry Smith */
5359612af27SStefano Zampini
MatMPIDenseScatter(Mat A,Mat B,PetscInt Bbidx,Mat C,Mat * outworkB)53666976f2fSJacob Faibussowitsch static PetscErrorCode MatMPIDenseScatter(Mat A, Mat B, PetscInt Bbidx, Mat C, Mat *outworkB)
537d71ae5a4SJacob Faibussowitsch {
538f32d5d43SBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *)A->data;
5391683a169SBarry Smith const PetscScalar *b;
54087753ddeSHong Zhang PetscScalar *rvalues;
541f32d5d43SBarry Smith VecScatter ctx = aij->Mvctx;
54287753ddeSHong Zhang const PetscInt *sindices, *sstarts, *rstarts;
5433515ee7fSJunchao Zhang const PetscMPIInt *sprocs, *rprocs;
5446497c311SBarry Smith PetscMPIInt nsends, nrecvs;
545f32d5d43SBarry Smith MPI_Request *swaits, *rwaits;
546ce94432eSBarry Smith MPI_Comm comm;
5476497c311SBarry Smith PetscMPIInt tag = ((PetscObject)ctx)->tag, ncols, nrows, nsends_mpi, nrecvs_mpi;
5484324174eSBarry Smith MPIAIJ_MPIDense *contents;
5494324174eSBarry Smith Mat workB;
55087753ddeSHong Zhang MPI_Datatype *stype, *rtype;
5516718818eSStefano Zampini PetscInt blda;
552f32d5d43SBarry Smith
553f32d5d43SBarry Smith PetscFunctionBegin;
5546718818eSStefano Zampini MatCheckProduct(C, 4);
55528b400f6SJacob Faibussowitsch PetscCheck(C->product->data, PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Product data empty");
5566497c311SBarry Smith PetscCall(PetscMPIIntCast(B->cmap->N, &ncols));
5576497c311SBarry Smith PetscCall(PetscMPIIntCast(aij->B->cmap->n, &nrows));
5586718818eSStefano Zampini contents = (MPIAIJ_MPIDense *)C->product->data;
5599566063dSJacob Faibussowitsch PetscCall(VecScatterGetRemote_Private(ctx, PETSC_TRUE /*send*/, &nsends, &sstarts, &sindices, &sprocs, NULL /*bs*/));
5609566063dSJacob Faibussowitsch PetscCall(VecScatterGetRemoteOrdered_Private(ctx, PETSC_FALSE /*recv*/, &nrecvs, &rstarts, NULL, &rprocs, NULL /*bs*/));
5619566063dSJacob Faibussowitsch PetscCall(PetscMPIIntCast(nsends, &nsends_mpi));
5629566063dSJacob Faibussowitsch PetscCall(PetscMPIIntCast(nrecvs, &nrecvs_mpi));
563b45e3bf4SStefano Zampini if (Bbidx == 0) workB = *outworkB = contents->workB;
564b45e3bf4SStefano Zampini else workB = *outworkB = contents->workB1;
56508401ef6SPierre Jolivet PetscCheck(nrows == workB->rmap->n, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Number of rows of workB %" PetscInt_FMT " not equal to columns of aij->B %d", workB->cmap->n, nrows);
5663515ee7fSJunchao Zhang swaits = contents->swaits;
5673515ee7fSJunchao Zhang rwaits = contents->rwaits;
568f32d5d43SBarry Smith
5699566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(B, &b));
5709566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(B, &blda));
57108401ef6SPierre Jolivet PetscCheck(blda == contents->blda, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Cannot reuse an input matrix with lda %" PetscInt_FMT " != %" PetscInt_FMT, blda, contents->blda);
5729566063dSJacob Faibussowitsch PetscCall(MatDenseGetArray(workB, &rvalues));
573f32d5d43SBarry Smith
57487753ddeSHong Zhang /* Post recv, use MPI derived data type to save memory */
5759566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)C, &comm));
57687753ddeSHong Zhang rtype = contents->rtype;
5776497c311SBarry Smith for (PetscMPIInt i = 0; i < nrecvs; i++) PetscCallMPI(MPIU_Irecv(rvalues + (rstarts[i] - rstarts[0]), ncols, rtype[i], rprocs[i], tag, comm, rwaits + i));
578f32d5d43SBarry Smith
57987753ddeSHong Zhang stype = contents->stype;
5806497c311SBarry Smith for (PetscMPIInt i = 0; i < nsends; i++) PetscCallMPI(MPIU_Isend(b, ncols, stype[i], sprocs[i], tag, comm, swaits + i));
5812636ff26SBarry Smith
5829566063dSJacob Faibussowitsch if (nrecvs) PetscCallMPI(MPI_Waitall(nrecvs_mpi, rwaits, MPI_STATUSES_IGNORE));
5839566063dSJacob Faibussowitsch if (nsends) PetscCallMPI(MPI_Waitall(nsends_mpi, swaits, MPI_STATUSES_IGNORE));
584f32d5d43SBarry Smith
5859566063dSJacob Faibussowitsch PetscCall(VecScatterRestoreRemote_Private(ctx, PETSC_TRUE /*send*/, &nsends, &sstarts, &sindices, &sprocs, NULL));
5869566063dSJacob Faibussowitsch PetscCall(VecScatterRestoreRemoteOrdered_Private(ctx, PETSC_FALSE /*recv*/, &nrecvs, &rstarts, NULL, &rprocs, NULL));
5879566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(B, &b));
5889566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArray(workB, &rvalues));
5893ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS);
59087753ddeSHong Zhang }
591f32d5d43SBarry Smith
MatMatMultNumeric_MPIAIJ_MPIDense(Mat A,Mat B,Mat C)592d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMatMultNumeric_MPIAIJ_MPIDense(Mat A, Mat B, Mat C)
593d71ae5a4SJacob Faibussowitsch {
594f32d5d43SBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *)A->data;
595f32d5d43SBarry Smith Mat_MPIDense *bdense = (Mat_MPIDense *)B->data;
596f32d5d43SBarry Smith Mat_MPIDense *cdense = (Mat_MPIDense *)C->data;
597f32d5d43SBarry Smith Mat workB;
59887753ddeSHong Zhang MPIAIJ_MPIDense *contents;
5999123193aSHong Zhang
6009123193aSHong Zhang PetscFunctionBegin;
6016718818eSStefano Zampini MatCheckProduct(C, 3);
60228b400f6SJacob Faibussowitsch PetscCheck(C->product->data, PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Product data empty");
6036718818eSStefano Zampini contents = (MPIAIJ_MPIDense *)C->product->data;
604*703c9151SPierre Jolivet /* diagonal block of A times all local rows of B, first make sure that everything is up-to-date */
605*703c9151SPierre Jolivet if (!cdense->A->product) {
606*703c9151SPierre Jolivet PetscCall(MatProductCreateWithMat(aij->A, bdense->A, NULL, cdense->A));
607*703c9151SPierre Jolivet PetscCall(MatProductSetType(cdense->A, MATPRODUCT_AB));
608*703c9151SPierre Jolivet PetscCall(MatProductSetFromOptions(cdense->A));
609*703c9151SPierre Jolivet PetscCall(MatProductSymbolic(cdense->A));
610*703c9151SPierre Jolivet } else PetscCall(MatProductReplaceMats(aij->A, bdense->A, NULL, cdense->A));
611*703c9151SPierre Jolivet if (PetscDefined(HAVE_CUPM) && !cdense->A->product->clear) {
612*703c9151SPierre Jolivet PetscBool flg;
613*703c9151SPierre Jolivet
614*703c9151SPierre Jolivet PetscCall(PetscObjectTypeCompare((PetscObject)C, MATMPIDENSE, &flg));
615*703c9151SPierre Jolivet if (flg) PetscCall(PetscObjectTypeCompare((PetscObject)A, MATMPIAIJ, &flg));
616*703c9151SPierre Jolivet if (!flg) cdense->A->product->clear = PETSC_TRUE; /* if either A or C is a device Mat, make sure MatProductClear() is called */
617*703c9151SPierre Jolivet }
618*703c9151SPierre Jolivet PetscCall(MatProductNumeric(cdense->A));
6195ea7661aSPierre Jolivet if (contents->workB->cmap->n == B->cmap->N) {
62087753ddeSHong Zhang /* get off processor parts of B needed to complete C=A*B */
6219566063dSJacob Faibussowitsch PetscCall(MatMPIDenseScatter(A, B, 0, C, &workB));
622f32d5d43SBarry Smith
623f32d5d43SBarry Smith /* off-diagonal block of A times nonlocal rows of B */
6249566063dSJacob Faibussowitsch PetscCall(MatMatMultNumericAdd_SeqAIJ_SeqDense(aij->B, workB, cdense->A, PETSC_TRUE));
62587753ddeSHong Zhang } else {
6265ea7661aSPierre Jolivet Mat Bb, Cb;
6276497c311SBarry Smith PetscInt BN = B->cmap->N, n = contents->workB->cmap->n;
628664c1e85SStefano Zampini PetscBool ccpu;
62987753ddeSHong Zhang
63008401ef6SPierre Jolivet PetscCheck(n > 0, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Column block size %" PetscInt_FMT " must be positive", n);
631664c1e85SStefano Zampini /* Prevent from unneeded copies back and forth from the GPU
632664c1e85SStefano Zampini when getting and restoring the submatrix
633664c1e85SStefano Zampini We need a proper GPU code for AIJ * dense in parallel */
6349566063dSJacob Faibussowitsch PetscCall(MatBoundToCPU(C, &ccpu));
6359566063dSJacob Faibussowitsch PetscCall(MatBindToCPU(C, PETSC_TRUE));
6366497c311SBarry Smith for (PetscInt i = 0; i < BN; i += n) {
637a2748737SPierre Jolivet PetscCall(MatDenseGetSubMatrix(B, PETSC_DECIDE, PETSC_DECIDE, i, PetscMin(i + n, BN), &Bb));
638a2748737SPierre Jolivet PetscCall(MatDenseGetSubMatrix(C, PETSC_DECIDE, PETSC_DECIDE, i, PetscMin(i + n, BN), &Cb));
63987753ddeSHong Zhang
6405ea7661aSPierre Jolivet /* get off processor parts of B needed to complete C=A*B */
6419566063dSJacob Faibussowitsch PetscCall(MatMPIDenseScatter(A, Bb, (i + n) > BN, C, &workB));
6425ea7661aSPierre Jolivet
6435ea7661aSPierre Jolivet /* off-diagonal block of A times nonlocal rows of B */
6445ea7661aSPierre Jolivet cdense = (Mat_MPIDense *)Cb->data;
6459566063dSJacob Faibussowitsch PetscCall(MatMatMultNumericAdd_SeqAIJ_SeqDense(aij->B, workB, cdense->A, PETSC_TRUE));
6469566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreSubMatrix(B, &Bb));
6479566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreSubMatrix(C, &Cb));
64887753ddeSHong Zhang }
6499566063dSJacob Faibussowitsch PetscCall(MatBindToCPU(C, ccpu));
65087753ddeSHong Zhang }
6513ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS);
6529123193aSHong Zhang }
653cf1a0672SHong Zhang
MatMatMultNumeric_MPIAIJ_MPIAIJ(Mat A,Mat P,Mat C)654d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMatMultNumeric_MPIAIJ_MPIAIJ(Mat A, Mat P, Mat C)
655d71ae5a4SJacob Faibussowitsch {
656cf1a0672SHong Zhang Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data, *c = (Mat_MPIAIJ *)C->data;
657f4f49eeaSPierre Jolivet Mat_SeqAIJ *ad = (Mat_SeqAIJ *)a->A->data, *ao = (Mat_SeqAIJ *)a->B->data;
658f4f49eeaSPierre Jolivet Mat_SeqAIJ *cd = (Mat_SeqAIJ *)c->A->data, *co = (Mat_SeqAIJ *)c->B->data;
659cf1a0672SHong Zhang PetscInt *adi = ad->i, *adj, *aoi = ao->i, *aoj;
660cf1a0672SHong Zhang PetscScalar *ada, *aoa, *cda = cd->a, *coa = co->a;
661cf1a0672SHong Zhang Mat_SeqAIJ *p_loc, *p_oth;
662cf1a0672SHong Zhang PetscInt *pi_loc, *pj_loc, *pi_oth, *pj_oth, *pj;
66329825010SHong Zhang PetscScalar *pa_loc, *pa_oth, *pa, valtmp, *ca;
66429825010SHong Zhang PetscInt cm = C->rmap->n, anz, pnz;
665cc1eb50dSBarry Smith MatProductCtx_APMPI *ptap;
66680da8df7SHong Zhang PetscScalar *apa_sparse;
667ce496241SStefano Zampini const PetscScalar *dummy;
668cf1a0672SHong Zhang PetscInt *api, *apj, *apJ, i, j, k, row;
66929825010SHong Zhang PetscInt cstart = C->cmap->rstart;
67029825010SHong Zhang PetscInt cdnz, conz, k0, k1, nextp;
671a7c7454dSHong Zhang MPI_Comm comm;
672a7c7454dSHong Zhang PetscMPIInt size;
6731634b032SHong Zhang
6741634b032SHong Zhang PetscFunctionBegin;
6756718818eSStefano Zampini MatCheckProduct(C, 3);
676cc1eb50dSBarry Smith ptap = (MatProductCtx_APMPI *)C->product->data;
67728b400f6SJacob Faibussowitsch PetscCheck(ptap, PetscObjectComm((PetscObject)C), PETSC_ERR_ARG_WRONGSTATE, "PtAP cannot be computed. Missing data");
6789566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)C, &comm));
6799566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size));
680aed4548fSBarry Smith PetscCheck(ptap->P_oth || size <= 1, PetscObjectComm((PetscObject)C), PETSC_ERR_ARG_WRONGSTATE, "AP cannot be reused. Do not call MatProductClear()");
681a7c7454dSHong Zhang
68265e4b4d4SStefano Zampini /* flag CPU mask for C */
68365e4b4d4SStefano Zampini #if defined(PETSC_HAVE_DEVICE)
68465e4b4d4SStefano Zampini if (C->offloadmask != PETSC_OFFLOAD_UNALLOCATED) C->offloadmask = PETSC_OFFLOAD_CPU;
68565e4b4d4SStefano Zampini if (c->A->offloadmask != PETSC_OFFLOAD_UNALLOCATED) c->A->offloadmask = PETSC_OFFLOAD_CPU;
68665e4b4d4SStefano Zampini if (c->B->offloadmask != PETSC_OFFLOAD_UNALLOCATED) c->B->offloadmask = PETSC_OFFLOAD_CPU;
68765e4b4d4SStefano Zampini #endif
68880da8df7SHong Zhang apa_sparse = ptap->apa;
68980da8df7SHong Zhang
690cf1a0672SHong Zhang /* 1) get P_oth = ptap->P_oth and P_loc = ptap->P_loc */
691cf1a0672SHong Zhang /* update numerical values of P_oth and P_loc */
6929566063dSJacob Faibussowitsch PetscCall(MatGetBrowsOfAoCols_MPIAIJ(A, P, MAT_REUSE_MATRIX, &ptap->startsj_s, &ptap->startsj_r, &ptap->bufa, &ptap->P_oth));
6939566063dSJacob Faibussowitsch PetscCall(MatMPIAIJGetLocalMat(P, MAT_REUSE_MATRIX, &ptap->P_loc));
694cf1a0672SHong Zhang
695cf1a0672SHong Zhang /* 2) compute numeric C_loc = A_loc*P = Ad*P_loc + Ao*P_oth */
696cf1a0672SHong Zhang /* get data from symbolic products */
697f4f49eeaSPierre Jolivet p_loc = (Mat_SeqAIJ *)ptap->P_loc->data;
6989371c9d4SSatish Balay pi_loc = p_loc->i;
6999371c9d4SSatish Balay pj_loc = p_loc->j;
7009371c9d4SSatish Balay pa_loc = p_loc->a;
701a7c7454dSHong Zhang if (size > 1) {
702f4f49eeaSPierre Jolivet p_oth = (Mat_SeqAIJ *)ptap->P_oth->data;
7039371c9d4SSatish Balay pi_oth = p_oth->i;
7049371c9d4SSatish Balay pj_oth = p_oth->j;
7059371c9d4SSatish Balay pa_oth = p_oth->a;
70620e3dc75SHong Zhang } else {
7079371c9d4SSatish Balay p_oth = NULL;
7089371c9d4SSatish Balay pi_oth = NULL;
7099371c9d4SSatish Balay pj_oth = NULL;
7109371c9d4SSatish Balay pa_oth = NULL;
711a7c7454dSHong Zhang }
712cf1a0672SHong Zhang
713ce496241SStefano Zampini /* trigger copy to CPU */
7149566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(a->A, &dummy));
7159566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(a->A, &dummy));
7169566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(a->B, &dummy));
7179566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(a->B, &dummy));
71829825010SHong Zhang api = ptap->api;
71929825010SHong Zhang apj = ptap->apj;
720cf1a0672SHong Zhang for (i = 0; i < cm; i++) {
72129825010SHong Zhang apJ = apj + api[i];
72229825010SHong Zhang
723cf1a0672SHong Zhang /* diagonal portion of A */
724cf1a0672SHong Zhang anz = adi[i + 1] - adi[i];
725cf1a0672SHong Zhang adj = ad->j + adi[i];
726cf1a0672SHong Zhang ada = ad->a + adi[i];
727cf1a0672SHong Zhang for (j = 0; j < anz; j++) {
728cf1a0672SHong Zhang row = adj[j];
729cf1a0672SHong Zhang pnz = pi_loc[row + 1] - pi_loc[row];
730cf1a0672SHong Zhang pj = pj_loc + pi_loc[row];
731cf1a0672SHong Zhang pa = pa_loc + pi_loc[row];
73229825010SHong Zhang /* perform sparse axpy */
733cf1a0672SHong Zhang valtmp = ada[j];
73429825010SHong Zhang nextp = 0;
73529825010SHong Zhang for (k = 0; nextp < pnz; k++) {
73629825010SHong Zhang if (apJ[k] == pj[nextp]) { /* column of AP == column of P */
73729825010SHong Zhang apa_sparse[k] += valtmp * pa[nextp++];
73829825010SHong Zhang }
7391634b032SHong Zhang }
7409566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(2.0 * pnz));
741cf1a0672SHong Zhang }
7421634b032SHong Zhang
743cf1a0672SHong Zhang /* off-diagonal portion of A */
744cf1a0672SHong Zhang anz = aoi[i + 1] - aoi[i];
7458e3a54c0SPierre Jolivet aoj = PetscSafePointerPlusOffset(ao->j, aoi[i]);
7468e3a54c0SPierre Jolivet aoa = PetscSafePointerPlusOffset(ao->a, aoi[i]);
747cf1a0672SHong Zhang for (j = 0; j < anz; j++) {
748cf1a0672SHong Zhang row = aoj[j];
749cf1a0672SHong Zhang pnz = pi_oth[row + 1] - pi_oth[row];
750cf1a0672SHong Zhang pj = pj_oth + pi_oth[row];
751cf1a0672SHong Zhang pa = pa_oth + pi_oth[row];
75229825010SHong Zhang /* perform sparse axpy */
753cf1a0672SHong Zhang valtmp = aoa[j];
75429825010SHong Zhang nextp = 0;
75529825010SHong Zhang for (k = 0; nextp < pnz; k++) {
75629825010SHong Zhang if (apJ[k] == pj[nextp]) { /* column of AP == column of P */
75729825010SHong Zhang apa_sparse[k] += valtmp * pa[nextp++];
75829825010SHong Zhang }
759cf1a0672SHong Zhang }
7609566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(2.0 * pnz));
761cf1a0672SHong Zhang }
7621634b032SHong Zhang
763cf1a0672SHong Zhang /* set values in C */
764cf1a0672SHong Zhang cdnz = cd->i[i + 1] - cd->i[i];
765cf1a0672SHong Zhang conz = co->i[i + 1] - co->i[i];
7661634b032SHong Zhang
767910cf402Sprj- /* 1st off-diagonal part of C */
7688e3a54c0SPierre Jolivet ca = PetscSafePointerPlusOffset(coa, co->i[i]);
769cf1a0672SHong Zhang k = 0;
770cf1a0672SHong Zhang for (k0 = 0; k0 < conz; k0++) {
771cf1a0672SHong Zhang if (apJ[k] >= cstart) break;
77229825010SHong Zhang ca[k0] = apa_sparse[k];
77329825010SHong Zhang apa_sparse[k] = 0.0;
774cf1a0672SHong Zhang k++;
775cf1a0672SHong Zhang }
7761634b032SHong Zhang
777cf1a0672SHong Zhang /* diagonal part of C */
778cf1a0672SHong Zhang ca = cda + cd->i[i];
779cf1a0672SHong Zhang for (k1 = 0; k1 < cdnz; k1++) {
78029825010SHong Zhang ca[k1] = apa_sparse[k];
78129825010SHong Zhang apa_sparse[k] = 0.0;
782cf1a0672SHong Zhang k++;
783cf1a0672SHong Zhang }
784cf1a0672SHong Zhang
785910cf402Sprj- /* 2nd off-diagonal part of C */
7868e3a54c0SPierre Jolivet ca = PetscSafePointerPlusOffset(coa, co->i[i]);
787cf1a0672SHong Zhang for (; k0 < conz; k0++) {
78829825010SHong Zhang ca[k0] = apa_sparse[k];
78929825010SHong Zhang apa_sparse[k] = 0.0;
790cf1a0672SHong Zhang k++;
791cf1a0672SHong Zhang }
792cf1a0672SHong Zhang }
7939566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(C, MAT_FINAL_ASSEMBLY));
7949566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(C, MAT_FINAL_ASSEMBLY));
7953ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS);
796cf1a0672SHong Zhang }
797cf1a0672SHong Zhang
7980fc8cf34SHong Zhang /* same as MatMatMultSymbolic_MPIAIJ_MPIAIJ_nonscalable(), except using LLCondensed to avoid O(BN) memory requirement */
MatMatMultSymbolic_MPIAIJ_MPIAIJ(Mat A,Mat P,PetscReal fill,Mat C)799d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMatMultSymbolic_MPIAIJ_MPIAIJ(Mat A, Mat P, PetscReal fill, Mat C)
800d71ae5a4SJacob Faibussowitsch {
801ce94432eSBarry Smith MPI_Comm comm;
802a7c7454dSHong Zhang PetscMPIInt size;
803cc1eb50dSBarry Smith MatProductCtx_APMPI *ptap;
8040298fd71SBarry Smith PetscFreeSpaceList free_space = NULL, current_space = NULL;
8056718818eSStefano Zampini Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
806f4f49eeaSPierre Jolivet Mat_SeqAIJ *ad = (Mat_SeqAIJ *)a->A->data, *ao = (Mat_SeqAIJ *)a->B->data, *p_loc, *p_oth;
8077dbaa2c6Sandi selinger PetscInt *pi_loc, *pj_loc, *pi_oth, *pj_oth, *dnz, *onz;
808cf1a0672SHong Zhang PetscInt *adi = ad->i, *adj = ad->j, *aoi = ao->i, *aoj = ao->j, rstart = A->rmap->rstart;
8098c78258cSHong Zhang PetscInt i, pnz, row, *api, *apj, *Jptr, apnz, nspacedouble = 0, j, nzi, *lnk, apnz_max = 1;
810e5ab8c0aSKarl Rupp PetscInt am = A->rmap->n, pn = P->cmap->n, pm = P->rmap->n, lsize = pn + 20;
811cf1a0672SHong Zhang PetscReal afill;
812b92f168fSBarry Smith MatType mtype;
813cf1a0672SHong Zhang
814cf1a0672SHong Zhang PetscFunctionBegin;
8156718818eSStefano Zampini MatCheckProduct(C, 4);
81628b400f6SJacob Faibussowitsch PetscCheck(!C->product->data, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Extra product struct not empty");
8179566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)A, &comm));
8189566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size));
819a7c7454dSHong Zhang
820cc1eb50dSBarry Smith /* create struct MatProductCtx_APMPI and attached it to C later */
8219566063dSJacob Faibussowitsch PetscCall(PetscNew(&ptap));
822cf1a0672SHong Zhang
823cf1a0672SHong Zhang /* get P_oth by taking rows of P (= non-zero cols of local A) from other processors */
8249566063dSJacob Faibussowitsch PetscCall(MatGetBrowsOfAoCols_MPIAIJ(A, P, MAT_INITIAL_MATRIX, &ptap->startsj_s, &ptap->startsj_r, &ptap->bufa, &ptap->P_oth));
82519f0e57aSHong Zhang
826cf1a0672SHong Zhang /* get P_loc by taking all local rows of P */
8279566063dSJacob Faibussowitsch PetscCall(MatMPIAIJGetLocalMat(P, MAT_INITIAL_MATRIX, &ptap->P_loc));
828cf1a0672SHong Zhang
829f4f49eeaSPierre Jolivet p_loc = (Mat_SeqAIJ *)ptap->P_loc->data;
8309371c9d4SSatish Balay pi_loc = p_loc->i;
8319371c9d4SSatish Balay pj_loc = p_loc->j;
832a7c7454dSHong Zhang if (size > 1) {
833f4f49eeaSPierre Jolivet p_oth = (Mat_SeqAIJ *)ptap->P_oth->data;
8349371c9d4SSatish Balay pi_oth = p_oth->i;
8359371c9d4SSatish Balay pj_oth = p_oth->j;
836968382fdSHong Zhang } else {
83720e3dc75SHong Zhang p_oth = NULL;
8389371c9d4SSatish Balay pi_oth = NULL;
8399371c9d4SSatish Balay pj_oth = NULL;
840a7c7454dSHong Zhang }
841cf1a0672SHong Zhang
842cf1a0672SHong Zhang /* first, compute symbolic AP = A_loc*P = A_diag*P_loc + A_off*P_oth */
84384648c2dSPierre Jolivet PetscCall(PetscMalloc1(am + 1, &api));
844cf1a0672SHong Zhang ptap->api = api;
845cf1a0672SHong Zhang api[0] = 0;
846cf1a0672SHong Zhang
8479566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedCreate_Scalable(lsize, &lnk));
848cf1a0672SHong Zhang
849cf1a0672SHong Zhang /* Initial FreeSpace size is fill*(nnz(A)+nnz(P)) */
8509566063dSJacob Faibussowitsch PetscCall(PetscFreeSpaceGet(PetscRealIntMultTruncate(fill, PetscIntSumTruncate(adi[am], PetscIntSumTruncate(aoi[am], pi_loc[pm]))), &free_space));
851cf1a0672SHong Zhang current_space = free_space;
852d0609cedSBarry Smith MatPreallocateBegin(comm, am, pn, dnz, onz);
853cf1a0672SHong Zhang for (i = 0; i < am; i++) {
854cf1a0672SHong Zhang /* diagonal portion of A */
855cf1a0672SHong Zhang nzi = adi[i + 1] - adi[i];
856cf1a0672SHong Zhang for (j = 0; j < nzi; j++) {
857cf1a0672SHong Zhang row = *adj++;
858cf1a0672SHong Zhang pnz = pi_loc[row + 1] - pi_loc[row];
859cf1a0672SHong Zhang Jptr = pj_loc + pi_loc[row];
8608a210135Sandi selinger /* Expand list if it is not long enough */
8618328dd82Sandi selinger if (pnz + apnz_max > lsize) {
8628328dd82Sandi selinger lsize = pnz + apnz_max;
8639566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedExpand_Scalable(lsize, &lnk));
8648a210135Sandi selinger }
865cf1a0672SHong Zhang /* add non-zero cols of P into the sorted linked list lnk */
8669566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedAddSorted_Scalable(pnz, Jptr, lnk));
8678a210135Sandi selinger apnz = *lnk; /* The first element in the list is the number of items in the list */
8688a210135Sandi selinger api[i + 1] = api[i] + apnz;
8698c78258cSHong Zhang if (apnz > apnz_max) apnz_max = apnz + 1; /* '1' for diagonal entry */
870cf1a0672SHong Zhang }
871cf1a0672SHong Zhang /* off-diagonal portion of A */
872cf1a0672SHong Zhang nzi = aoi[i + 1] - aoi[i];
873cf1a0672SHong Zhang for (j = 0; j < nzi; j++) {
874cf1a0672SHong Zhang row = *aoj++;
875cf1a0672SHong Zhang pnz = pi_oth[row + 1] - pi_oth[row];
876cf1a0672SHong Zhang Jptr = pj_oth + pi_oth[row];
8778a210135Sandi selinger /* Expand list if it is not long enough */
8788328dd82Sandi selinger if (pnz + apnz_max > lsize) {
8798328dd82Sandi selinger lsize = pnz + apnz_max;
8809566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedExpand_Scalable(lsize, &lnk));
8818a210135Sandi selinger }
8828a210135Sandi selinger /* add non-zero cols of P into the sorted linked list lnk */
8839566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedAddSorted_Scalable(pnz, Jptr, lnk));
8848a210135Sandi selinger apnz = *lnk; /* The first element in the list is the number of items in the list */
8858a210135Sandi selinger api[i + 1] = api[i] + apnz;
8868c78258cSHong Zhang if (apnz > apnz_max) apnz_max = apnz + 1; /* '1' for diagonal entry */
887cf1a0672SHong Zhang }
8888c78258cSHong Zhang
8898c78258cSHong Zhang /* add missing diagonal entry */
8908c78258cSHong Zhang if (C->force_diagonals) {
8918c78258cSHong Zhang j = i + rstart; /* column index */
8929566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedAddSorted_Scalable(1, &j, lnk));
8938c78258cSHong Zhang }
8948c78258cSHong Zhang
895f84c536bSHong Zhang apnz = *lnk;
896cf1a0672SHong Zhang api[i + 1] = api[i] + apnz;
8978a210135Sandi selinger if (apnz > apnz_max) apnz_max = apnz;
898cf1a0672SHong Zhang
899cf1a0672SHong Zhang /* if free space is not available, double the total space in the list */
900cf1a0672SHong Zhang if (current_space->local_remaining < apnz) {
9019566063dSJacob Faibussowitsch PetscCall(PetscFreeSpaceGet(PetscIntSumTruncate(apnz, current_space->total_array_size), ¤t_space));
902cf1a0672SHong Zhang nspacedouble++;
903cf1a0672SHong Zhang }
904cf1a0672SHong Zhang
905cf1a0672SHong Zhang /* Copy data into free space, then initialize lnk */
9069566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedClean_Scalable(apnz, current_space->array, lnk));
9079566063dSJacob Faibussowitsch PetscCall(MatPreallocateSet(i + rstart, apnz, current_space->array, dnz, onz));
9082205254eSKarl Rupp
909cf1a0672SHong Zhang current_space->array += apnz;
910cf1a0672SHong Zhang current_space->local_used += apnz;
911cf1a0672SHong Zhang current_space->local_remaining -= apnz;
912cf1a0672SHong Zhang }
913cf1a0672SHong Zhang
914cf1a0672SHong Zhang /* Allocate space for apj, initialize apj, and */
915cf1a0672SHong Zhang /* destroy list of free space and other temporary array(s) */
91684648c2dSPierre Jolivet PetscCall(PetscMalloc1(api[am], &ptap->apj));
917cf1a0672SHong Zhang apj = ptap->apj;
9189566063dSJacob Faibussowitsch PetscCall(PetscFreeSpaceContiguous(&free_space, ptap->apj));
9199566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedDestroy_Scalable(lnk));
920cf1a0672SHong Zhang
9214222ddf1SHong Zhang /* create and assemble symbolic parallel matrix C */
9229566063dSJacob Faibussowitsch PetscCall(MatSetSizes(C, am, pn, PETSC_DETERMINE, PETSC_DETERMINE));
9239566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizesFromMats(C, A, P));
9249566063dSJacob Faibussowitsch PetscCall(MatGetType(A, &mtype));
9259566063dSJacob Faibussowitsch PetscCall(MatSetType(C, mtype));
9269566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(C, 0, dnz, 0, onz));
927d0609cedSBarry Smith MatPreallocateEnd(dnz, onz);
928cf1a0672SHong Zhang
9294222ddf1SHong Zhang /* malloc apa for assembly C */
9309566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(apnz_max, &ptap->apa));
93117f75172Sandi selinger
9329566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIAIJ_CopyFromCSRFormat_Symbolic(C, apj, api));
933799b351eSPierre Jolivet PetscCall(MatSetOption(C, MAT_NO_OFF_PROC_ENTRIES, PETSC_TRUE));
9349566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(C, MAT_FINAL_ASSEMBLY));
9359566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(C, MAT_FINAL_ASSEMBLY));
9369566063dSJacob Faibussowitsch PetscCall(MatSetOption(C, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE));
937cf1a0672SHong Zhang
9384222ddf1SHong Zhang C->ops->matmultnumeric = MatMatMultNumeric_MPIAIJ_MPIAIJ;
9394222ddf1SHong Zhang C->ops->productnumeric = MatProductNumeric_AB;
940cf1a0672SHong Zhang
9414222ddf1SHong Zhang /* attach the supporting struct to C for reuse */
9426718818eSStefano Zampini C->product->data = ptap;
943cc1eb50dSBarry Smith C->product->destroy = MatProductCtxDestroy_MPIAIJ_MatMatMult;
944cf1a0672SHong Zhang
945cf1a0672SHong Zhang /* set MatInfo */
946118727c9SMark F. Adams afill = (PetscReal)api[am] / (adi[am] + aoi[am] + pi_loc[pm] + 1) + 1.e-5;
947cf1a0672SHong Zhang if (afill < 1.0) afill = 1.0;
9484222ddf1SHong Zhang C->info.mallocs = nspacedouble;
9494222ddf1SHong Zhang C->info.fill_ratio_given = fill;
9504222ddf1SHong Zhang C->info.fill_ratio_needed = afill;
951cf1a0672SHong Zhang
952cf1a0672SHong Zhang #if defined(PETSC_USE_INFO)
953cf1a0672SHong Zhang if (api[am]) {
9549566063dSJacob Faibussowitsch PetscCall(PetscInfo(C, "Reallocs %" PetscInt_FMT "; Fill ratio: given %g needed %g.\n", nspacedouble, (double)fill, (double)afill));
9559566063dSJacob Faibussowitsch PetscCall(PetscInfo(C, "Use MatMatMult(A,B,MatReuse,%g,&C) for best performance.;\n", (double)afill));
956cf1a0672SHong Zhang } else {
9579566063dSJacob Faibussowitsch PetscCall(PetscInfo(C, "Empty matrix product\n"));
958cf1a0672SHong Zhang }
959cf1a0672SHong Zhang #endif
9603ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS);
9611634b032SHong Zhang }
962f96d37fcSHong Zhang
963a9d7e0ccSandi selinger /* This function is needed for the seqMPI matrix-matrix multiplication. */
964a9d7e0ccSandi selinger /* Three input arrays are merged to one output array. The size of the */
965a9d7e0ccSandi selinger /* output array is also output. Duplicate entries only show up once. */
Merge3SortedArrays(PetscInt size1,PetscInt * in1,PetscInt size2,PetscInt * in2,PetscInt size3,PetscInt * in3,PetscInt * size4,PetscInt * out)966d71ae5a4SJacob Faibussowitsch static void Merge3SortedArrays(PetscInt size1, PetscInt *in1, PetscInt size2, PetscInt *in2, PetscInt size3, PetscInt *in3, PetscInt *size4, PetscInt *out)
967d71ae5a4SJacob Faibussowitsch {
968a9d7e0ccSandi selinger int i = 0, j = 0, k = 0, l = 0;
969a9d7e0ccSandi selinger
970a9d7e0ccSandi selinger /* Traverse all three arrays */
971a9d7e0ccSandi selinger while (i < size1 && j < size2 && k < size3) {
972a9d7e0ccSandi selinger if (in1[i] < in2[j] && in1[i] < in3[k]) {
973a9d7e0ccSandi selinger out[l++] = in1[i++];
9749371c9d4SSatish Balay } else if (in2[j] < in1[i] && in2[j] < in3[k]) {
975a9d7e0ccSandi selinger out[l++] = in2[j++];
9769371c9d4SSatish Balay } else if (in3[k] < in1[i] && in3[k] < in2[j]) {
977a9d7e0ccSandi selinger out[l++] = in3[k++];
9789371c9d4SSatish Balay } else if (in1[i] == in2[j] && in1[i] < in3[k]) {
979a9d7e0ccSandi selinger out[l++] = in1[i];
980a9d7e0ccSandi selinger i++, j++;
9819371c9d4SSatish Balay } else if (in1[i] == in3[k] && in1[i] < in2[j]) {
982a9d7e0ccSandi selinger out[l++] = in1[i];
983a9d7e0ccSandi selinger i++, k++;
9849371c9d4SSatish Balay } else if (in3[k] == in2[j] && in2[j] < in1[i]) {
985a9d7e0ccSandi selinger out[l++] = in2[j];
986a9d7e0ccSandi selinger k++, j++;
9879371c9d4SSatish Balay } else if (in1[i] == in2[j] && in1[i] == in3[k]) {
988a9d7e0ccSandi selinger out[l++] = in1[i];
989a9d7e0ccSandi selinger i++, j++, k++;
990a9d7e0ccSandi selinger }
991a9d7e0ccSandi selinger }
992a9d7e0ccSandi selinger
993a9d7e0ccSandi selinger /* Traverse two remaining arrays */
994a9d7e0ccSandi selinger while (i < size1 && j < size2) {
995a9d7e0ccSandi selinger if (in1[i] < in2[j]) {
996a9d7e0ccSandi selinger out[l++] = in1[i++];
9979371c9d4SSatish Balay } else if (in1[i] > in2[j]) {
998a9d7e0ccSandi selinger out[l++] = in2[j++];
9999371c9d4SSatish Balay } else {
1000a9d7e0ccSandi selinger out[l++] = in1[i];
1001a9d7e0ccSandi selinger i++, j++;
1002a9d7e0ccSandi selinger }
1003a9d7e0ccSandi selinger }
1004a9d7e0ccSandi selinger
1005a9d7e0ccSandi selinger while (i < size1 && k < size3) {
1006a9d7e0ccSandi selinger if (in1[i] < in3[k]) {
1007a9d7e0ccSandi selinger out[l++] = in1[i++];
10089371c9d4SSatish Balay } else if (in1[i] > in3[k]) {
1009a9d7e0ccSandi selinger out[l++] = in3[k++];
10109371c9d4SSatish Balay } else {
1011a9d7e0ccSandi selinger out[l++] = in1[i];
1012a9d7e0ccSandi selinger i++, k++;
1013a9d7e0ccSandi selinger }
1014a9d7e0ccSandi selinger }
1015a9d7e0ccSandi selinger
1016a9d7e0ccSandi selinger while (k < size3 && j < size2) {
1017a9d7e0ccSandi selinger if (in3[k] < in2[j]) {
1018a9d7e0ccSandi selinger out[l++] = in3[k++];
10199371c9d4SSatish Balay } else if (in3[k] > in2[j]) {
1020a9d7e0ccSandi selinger out[l++] = in2[j++];
10219371c9d4SSatish Balay } else {
1022a9d7e0ccSandi selinger out[l++] = in3[k];
1023a9d7e0ccSandi selinger k++, j++;
1024a9d7e0ccSandi selinger }
1025a9d7e0ccSandi selinger }
1026a9d7e0ccSandi selinger
1027a9d7e0ccSandi selinger /* Traverse one remaining array */
1028a9d7e0ccSandi selinger while (i < size1) out[l++] = in1[i++];
1029a9d7e0ccSandi selinger while (j < size2) out[l++] = in2[j++];
1030a9d7e0ccSandi selinger while (k < size3) out[l++] = in3[k++];
1031a9d7e0ccSandi selinger
1032a9d7e0ccSandi selinger *size4 = l;
1033a9d7e0ccSandi selinger }
1034a9d7e0ccSandi selinger
103573b67375Sandi selinger /* This matrix-matrix multiplication algorithm divides the multiplication into three multiplications and */
103673b67375Sandi selinger /* adds up the products. Two of these three multiplications are performed with existing (sequential) */
103773b67375Sandi selinger /* matrix-matrix multiplications. */
MatMatMultSymbolic_MPIAIJ_MPIAIJ_seqMPI(Mat A,Mat P,PetscReal fill,Mat C)1038d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMatMultSymbolic_MPIAIJ_MPIAIJ_seqMPI(Mat A, Mat P, PetscReal fill, Mat C)
1039d71ae5a4SJacob Faibussowitsch {
1040a9d7e0ccSandi selinger MPI_Comm comm;
1041a9d7e0ccSandi selinger PetscMPIInt size;
1042cc1eb50dSBarry Smith MatProductCtx_APMPI *ptap;
1043a9d7e0ccSandi selinger PetscFreeSpaceList free_space_diag = NULL, current_space = NULL;
1044a9d7e0ccSandi selinger Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
1045f4f49eeaSPierre Jolivet Mat_SeqAIJ *ad = (Mat_SeqAIJ *)a->A->data, *ao = (Mat_SeqAIJ *)a->B->data, *p_loc;
1046a9d7e0ccSandi selinger Mat_MPIAIJ *p = (Mat_MPIAIJ *)P->data;
1047a9d7e0ccSandi selinger Mat_SeqAIJ *adpd_seq, *p_off, *aopoth_seq;
1048a9d7e0ccSandi selinger PetscInt adponz, adpdnz;
10497dbaa2c6Sandi selinger PetscInt *pi_loc, *dnz, *onz;
1050a9d7e0ccSandi selinger PetscInt *adi = ad->i, *adj = ad->j, *aoi = ao->i, rstart = A->rmap->rstart;
10519371c9d4SSatish Balay PetscInt *lnk, i, i1 = 0, pnz, row, *adpoi, *adpoj, *api, *adpoJ, *aopJ, *apJ, *Jptr, aopnz, nspacedouble = 0, j, nzi, *apj, apnz, *adpdi, *adpdj, *adpdJ, *poff_i, *poff_j, *j_temp, *aopothi, *aopothj;
1052a016958eSandi selinger PetscInt am = A->rmap->n, pN = P->cmap->N, pn = P->cmap->n, pm = P->rmap->n, p_colstart, p_colend;
1053a9d7e0ccSandi selinger PetscBT lnkbt;
1054a9d7e0ccSandi selinger PetscReal afill;
1055a9d7e0ccSandi selinger PetscMPIInt rank;
1056a9d7e0ccSandi selinger Mat adpd, aopoth;
1057b92f168fSBarry Smith MatType mtype;
1058e83e5f86SFande Kong const char *prefix;
1059a9d7e0ccSandi selinger
1060a9d7e0ccSandi selinger PetscFunctionBegin;
10616718818eSStefano Zampini MatCheckProduct(C, 4);
106228b400f6SJacob Faibussowitsch PetscCheck(!C->product->data, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Extra product struct not empty");
10639566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)A, &comm));
10649566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size));
10659566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank));
10669566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRangeColumn(P, &p_colstart, &p_colend));
1067a9d7e0ccSandi selinger
1068cc1eb50dSBarry Smith /* create struct MatProductCtx_APMPI and attached it to C later */
10699566063dSJacob Faibussowitsch PetscCall(PetscNew(&ptap));
1070a9d7e0ccSandi selinger
1071a9d7e0ccSandi selinger /* get P_oth by taking rows of P (= non-zero cols of local A) from other processors */
10729566063dSJacob Faibussowitsch PetscCall(MatGetBrowsOfAoCols_MPIAIJ(A, P, MAT_INITIAL_MATRIX, &ptap->startsj_s, &ptap->startsj_r, &ptap->bufa, &ptap->P_oth));
1073a9d7e0ccSandi selinger
1074a9d7e0ccSandi selinger /* get P_loc by taking all local rows of P */
10759566063dSJacob Faibussowitsch PetscCall(MatMPIAIJGetLocalMat(P, MAT_INITIAL_MATRIX, &ptap->P_loc));
1076a9d7e0ccSandi selinger
1077f4f49eeaSPierre Jolivet p_loc = (Mat_SeqAIJ *)ptap->P_loc->data;
1078a9d7e0ccSandi selinger pi_loc = p_loc->i;
1079a9d7e0ccSandi selinger
1080a9d7e0ccSandi selinger /* Allocate memory for the i arrays of the matrices A*P, A_diag*P_off and A_offd * P */
108184648c2dSPierre Jolivet PetscCall(PetscMalloc1(am + 1, &api));
108284648c2dSPierre Jolivet PetscCall(PetscMalloc1(am + 1, &adpoi));
1083a9d7e0ccSandi selinger
1084a9d7e0ccSandi selinger adpoi[0] = 0;
1085a9d7e0ccSandi selinger ptap->api = api;
1086a9d7e0ccSandi selinger api[0] = 0;
1087a9d7e0ccSandi selinger
1088a9d7e0ccSandi selinger /* create and initialize a linked list, will be used for both A_diag * P_loc_off and A_offd * P_oth */
10899566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedCreate(pN, pN, &lnk, &lnkbt));
1090d0609cedSBarry Smith MatPreallocateBegin(comm, am, pn, dnz, onz);
1091a9d7e0ccSandi selinger
1092a9d7e0ccSandi selinger /* Symbolic calc of A_loc_diag * P_loc_diag */
10939566063dSJacob Faibussowitsch PetscCall(MatGetOptionsPrefix(A, &prefix));
10949566063dSJacob Faibussowitsch PetscCall(MatProductCreate(a->A, p->A, NULL, &adpd));
10959566063dSJacob Faibussowitsch PetscCall(MatGetOptionsPrefix(A, &prefix));
10969566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(adpd, prefix));
10979566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(adpd, "inner_diag_"));
10984222ddf1SHong Zhang
10999566063dSJacob Faibussowitsch PetscCall(MatProductSetType(adpd, MATPRODUCT_AB));
11009566063dSJacob Faibussowitsch PetscCall(MatProductSetAlgorithm(adpd, "sorted"));
11019566063dSJacob Faibussowitsch PetscCall(MatProductSetFill(adpd, fill));
11029566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions(adpd));
11038c78258cSHong Zhang
11048c78258cSHong Zhang adpd->force_diagonals = C->force_diagonals;
11059566063dSJacob Faibussowitsch PetscCall(MatProductSymbolic(adpd));
11064222ddf1SHong Zhang
1107a9d7e0ccSandi selinger adpd_seq = (Mat_SeqAIJ *)((adpd)->data);
11089371c9d4SSatish Balay adpdi = adpd_seq->i;
11099371c9d4SSatish Balay adpdj = adpd_seq->j;
1110f4f49eeaSPierre Jolivet p_off = (Mat_SeqAIJ *)p->B->data;
11119371c9d4SSatish Balay poff_i = p_off->i;
11129371c9d4SSatish Balay poff_j = p_off->j;
1113a9d7e0ccSandi selinger
111473b67375Sandi selinger /* j_temp stores indices of a result row before they are added to the linked list */
111584648c2dSPierre Jolivet PetscCall(PetscMalloc1(pN, &j_temp));
1116a9d7e0ccSandi selinger
1117a9d7e0ccSandi selinger /* Symbolic calc of the A_diag * p_loc_off */
1118a9d7e0ccSandi selinger /* Initial FreeSpace size is fill*(nnz(A)+nnz(P)) */
11199566063dSJacob Faibussowitsch PetscCall(PetscFreeSpaceGet(PetscRealIntMultTruncate(fill, PetscIntSumTruncate(adi[am], PetscIntSumTruncate(aoi[am], pi_loc[pm]))), &free_space_diag));
1120a9d7e0ccSandi selinger current_space = free_space_diag;
1121a9d7e0ccSandi selinger
1122a9d7e0ccSandi selinger for (i = 0; i < am; i++) {
1123a9d7e0ccSandi selinger /* A_diag * P_loc_off */
1124a9d7e0ccSandi selinger nzi = adi[i + 1] - adi[i];
1125a9d7e0ccSandi selinger for (j = 0; j < nzi; j++) {
1126a9d7e0ccSandi selinger row = *adj++;
1127a9d7e0ccSandi selinger pnz = poff_i[row + 1] - poff_i[row];
1128a9d7e0ccSandi selinger Jptr = poff_j + poff_i[row];
1129ad540459SPierre Jolivet for (i1 = 0; i1 < pnz; i1++) j_temp[i1] = p->garray[Jptr[i1]];
1130a9d7e0ccSandi selinger /* add non-zero cols of P into the sorted linked list lnk */
11319566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedAddSorted(pnz, j_temp, lnk, lnkbt));
1132a9d7e0ccSandi selinger }
1133a9d7e0ccSandi selinger
1134a9d7e0ccSandi selinger adponz = lnk[0];
1135a9d7e0ccSandi selinger adpoi[i + 1] = adpoi[i] + adponz;
1136a9d7e0ccSandi selinger
1137a9d7e0ccSandi selinger /* if free space is not available, double the total space in the list */
1138a9d7e0ccSandi selinger if (current_space->local_remaining < adponz) {
11399566063dSJacob Faibussowitsch PetscCall(PetscFreeSpaceGet(PetscIntSumTruncate(adponz, current_space->total_array_size), ¤t_space));
1140a9d7e0ccSandi selinger nspacedouble++;
1141a9d7e0ccSandi selinger }
1142a9d7e0ccSandi selinger
1143a9d7e0ccSandi selinger /* Copy data into free space, then initialize lnk */
11449566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedClean(pN, adponz, current_space->array, lnk, lnkbt));
1145a9d7e0ccSandi selinger
1146a9d7e0ccSandi selinger current_space->array += adponz;
1147a9d7e0ccSandi selinger current_space->local_used += adponz;
1148a9d7e0ccSandi selinger current_space->local_remaining -= adponz;
1149a9d7e0ccSandi selinger }
1150a9d7e0ccSandi selinger
1151a9d7e0ccSandi selinger /* Symbolic calc of A_off * P_oth */
11529566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(a->B, prefix));
11539566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(a->B, "inner_offdiag_"));
11549566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF, &aopoth));
11559566063dSJacob Faibussowitsch PetscCall(MatMatMultSymbolic_SeqAIJ_SeqAIJ(a->B, ptap->P_oth, fill, aopoth));
1156a9d7e0ccSandi selinger aopoth_seq = (Mat_SeqAIJ *)((aopoth)->data);
11579371c9d4SSatish Balay aopothi = aopoth_seq->i;
11589371c9d4SSatish Balay aopothj = aopoth_seq->j;
1159a9d7e0ccSandi selinger
1160a9d7e0ccSandi selinger /* Allocate space for apj, adpj, aopj, ... */
1161a9d7e0ccSandi selinger /* destroy lists of free space and other temporary array(s) */
1162a9d7e0ccSandi selinger
116384648c2dSPierre Jolivet PetscCall(PetscMalloc1(aopothi[am] + adpoi[am] + adpdi[am], &ptap->apj));
116484648c2dSPierre Jolivet PetscCall(PetscMalloc1(adpoi[am], &adpoj));
1165a9d7e0ccSandi selinger
1166a9d7e0ccSandi selinger /* Copy from linked list to j-array */
11679566063dSJacob Faibussowitsch PetscCall(PetscFreeSpaceContiguous(&free_space_diag, adpoj));
11689566063dSJacob Faibussowitsch PetscCall(PetscLLDestroy(lnk, lnkbt));
1169a9d7e0ccSandi selinger
1170a9d7e0ccSandi selinger adpoJ = adpoj;
1171a9d7e0ccSandi selinger adpdJ = adpdj;
1172a9d7e0ccSandi selinger aopJ = aopothj;
1173a9d7e0ccSandi selinger apj = ptap->apj;
1174a9d7e0ccSandi selinger apJ = apj; /* still empty */
1175a9d7e0ccSandi selinger
1176a9d7e0ccSandi selinger /* Merge j-arrays of A_off * P, A_diag * P_loc_off, and */
1177a9d7e0ccSandi selinger /* A_diag * P_loc_diag to get A*P */
1178a9d7e0ccSandi selinger for (i = 0; i < am; i++) {
1179a9d7e0ccSandi selinger aopnz = aopothi[i + 1] - aopothi[i];
1180a9d7e0ccSandi selinger adponz = adpoi[i + 1] - adpoi[i];
1181a9d7e0ccSandi selinger adpdnz = adpdi[i + 1] - adpdi[i];
1182a9d7e0ccSandi selinger
1183a9d7e0ccSandi selinger /* Correct indices from A_diag*P_diag */
1184ad540459SPierre Jolivet for (i1 = 0; i1 < adpdnz; i1++) adpdJ[i1] += p_colstart;
1185a9d7e0ccSandi selinger /* Merge j-arrays of A_diag * P_loc_off and A_diag * P_loc_diag and A_off * P_oth */
1186a9d7e0ccSandi selinger Merge3SortedArrays(adponz, adpoJ, adpdnz, adpdJ, aopnz, aopJ, &apnz, apJ);
11879566063dSJacob Faibussowitsch PetscCall(MatPreallocateSet(i + rstart, apnz, apJ, dnz, onz));
1188a9d7e0ccSandi selinger
1189a9d7e0ccSandi selinger aopJ += aopnz;
1190a9d7e0ccSandi selinger adpoJ += adponz;
1191a9d7e0ccSandi selinger adpdJ += adpdnz;
1192a9d7e0ccSandi selinger apJ += apnz;
1193a9d7e0ccSandi selinger api[i + 1] = api[i] + apnz;
1194a9d7e0ccSandi selinger }
1195a9d7e0ccSandi selinger
1196a9d7e0ccSandi selinger /* malloc apa to store dense row A[i,:]*P */
119784648c2dSPierre Jolivet PetscCall(PetscCalloc1(pN, &ptap->apa));
1198a9d7e0ccSandi selinger
11994222ddf1SHong Zhang /* create and assemble symbolic parallel matrix C */
12009566063dSJacob Faibussowitsch PetscCall(MatSetSizes(C, am, pn, PETSC_DETERMINE, PETSC_DETERMINE));
12019566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizesFromMats(C, A, P));
12029566063dSJacob Faibussowitsch PetscCall(MatGetType(A, &mtype));
12039566063dSJacob Faibussowitsch PetscCall(MatSetType(C, mtype));
12049566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(C, 0, dnz, 0, onz));
1205d0609cedSBarry Smith MatPreallocateEnd(dnz, onz);
120617f75172Sandi selinger
12079566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIAIJ_CopyFromCSRFormat_Symbolic(C, apj, api));
1208799b351eSPierre Jolivet PetscCall(MatSetOption(C, MAT_NO_OFF_PROC_ENTRIES, PETSC_TRUE));
12099566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(C, MAT_FINAL_ASSEMBLY));
12109566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(C, MAT_FINAL_ASSEMBLY));
12119566063dSJacob Faibussowitsch PetscCall(MatSetOption(C, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE));
121217f75172Sandi selinger
12134222ddf1SHong Zhang C->ops->matmultnumeric = MatMatMultNumeric_MPIAIJ_MPIAIJ_nonscalable;
12144222ddf1SHong Zhang C->ops->productnumeric = MatProductNumeric_AB;
1215a9d7e0ccSandi selinger
12164222ddf1SHong Zhang /* attach the supporting struct to C for reuse */
12176718818eSStefano Zampini C->product->data = ptap;
1218cc1eb50dSBarry Smith C->product->destroy = MatProductCtxDestroy_MPIAIJ_MatMatMult;
1219a9d7e0ccSandi selinger
1220a9d7e0ccSandi selinger /* set MatInfo */
122173b67375Sandi selinger afill = (PetscReal)api[am] / (adi[am] + aoi[am] + pi_loc[pm] + 1) + 1.e-5;
122273b67375Sandi selinger if (afill < 1.0) afill = 1.0;
12234222ddf1SHong Zhang C->info.mallocs = nspacedouble;
12244222ddf1SHong Zhang C->info.fill_ratio_given = fill;
12254222ddf1SHong Zhang C->info.fill_ratio_needed = afill;
1226a9d7e0ccSandi selinger
1227a9d7e0ccSandi selinger #if defined(PETSC_USE_INFO)
1228a9d7e0ccSandi selinger if (api[am]) {
12299566063dSJacob Faibussowitsch PetscCall(PetscInfo(C, "Reallocs %" PetscInt_FMT "; Fill ratio: given %g needed %g.\n", nspacedouble, (double)fill, (double)afill));
12309566063dSJacob Faibussowitsch PetscCall(PetscInfo(C, "Use MatMatMult(A,B,MatReuse,%g,&C) for best performance.;\n", (double)afill));
1231a9d7e0ccSandi selinger } else {
12329566063dSJacob Faibussowitsch PetscCall(PetscInfo(C, "Empty matrix product\n"));
1233a9d7e0ccSandi selinger }
1234a9d7e0ccSandi selinger #endif
1235a9d7e0ccSandi selinger
12369566063dSJacob Faibussowitsch PetscCall(MatDestroy(&aopoth));
12379566063dSJacob Faibussowitsch PetscCall(MatDestroy(&adpd));
12389566063dSJacob Faibussowitsch PetscCall(PetscFree(j_temp));
12399566063dSJacob Faibussowitsch PetscCall(PetscFree(adpoj));
12409566063dSJacob Faibussowitsch PetscCall(PetscFree(adpoi));
12413ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS);
1242a9d7e0ccSandi selinger }
1243a9d7e0ccSandi selinger
1244c216dbf3SHong Zhang /* This routine only works when scall=MAT_REUSE_MATRIX! */
MatTransposeMatMultNumeric_MPIAIJ_MPIAIJ_matmatmult(Mat P,Mat A,Mat C)1245d71ae5a4SJacob Faibussowitsch PetscErrorCode MatTransposeMatMultNumeric_MPIAIJ_MPIAIJ_matmatmult(Mat P, Mat A, Mat C)
1246d71ae5a4SJacob Faibussowitsch {
1247cc1eb50dSBarry Smith MatProductCtx_APMPI *ptap;
124860552ceaSHong Zhang Mat Pt;
1249c216dbf3SHong Zhang
1250c216dbf3SHong Zhang PetscFunctionBegin;
12516718818eSStefano Zampini MatCheckProduct(C, 3);
1252cc1eb50dSBarry Smith ptap = (MatProductCtx_APMPI *)C->product->data;
125328b400f6SJacob Faibussowitsch PetscCheck(ptap, PetscObjectComm((PetscObject)C), PETSC_ERR_ARG_WRONGSTATE, "PtAP cannot be computed. Missing data");
125428b400f6SJacob Faibussowitsch PetscCheck(ptap->Pt, PetscObjectComm((PetscObject)C), PETSC_ERR_ARG_WRONGSTATE, "PtA cannot be reused. Do not call MatProductClear()");
125560552ceaSHong Zhang
125660552ceaSHong Zhang Pt = ptap->Pt;
12571cdffd5eSHong Zhang PetscCall(MatTransposeSetPrecursor(P, Pt));
12589566063dSJacob Faibussowitsch PetscCall(MatTranspose(P, MAT_REUSE_MATRIX, &Pt));
12599566063dSJacob Faibussowitsch PetscCall(MatMatMultNumeric_MPIAIJ_MPIAIJ(Pt, A, C));
12603ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS);
1261f96d37fcSHong Zhang }
1262f96d37fcSHong Zhang
1263c5af039cSHong Zhang /* This routine is modified from MatPtAPSymbolic_MPIAIJ_MPIAIJ() */
MatTransposeMatMultSymbolic_MPIAIJ_MPIAIJ_nonscalable(Mat P,Mat A,PetscReal fill,Mat C)1264d71ae5a4SJacob Faibussowitsch PetscErrorCode MatTransposeMatMultSymbolic_MPIAIJ_MPIAIJ_nonscalable(Mat P, Mat A, PetscReal fill, Mat C)
1265d71ae5a4SJacob Faibussowitsch {
1266cc1eb50dSBarry Smith MatProductCtx_APMPI *ptap;
12676718818eSStefano Zampini Mat_MPIAIJ *p = (Mat_MPIAIJ *)P->data;
1268912837bbSHong Zhang MPI_Comm comm;
1269912837bbSHong Zhang PetscMPIInt size, rank;
1270912837bbSHong Zhang PetscFreeSpaceList free_space = NULL, current_space = NULL;
12714ede91e3SHong Zhang PetscInt pn = P->cmap->n, aN = A->cmap->N, an = A->cmap->n;
12726497c311SBarry Smith PetscInt *lnk, i, k, rstart;
1273912837bbSHong Zhang PetscBT lnkbt;
12746497c311SBarry Smith PetscMPIInt tagi, tagj, *len_si, *len_s, *len_ri, nrecv, proc, nsend;
1275ec4bef21SJose E. Roman PETSC_UNUSED PetscMPIInt icompleted = 0;
12768c78258cSHong Zhang PetscInt **buf_rj, **buf_ri, **buf_ri_k, row, ncols, *cols;
12776497c311SBarry Smith PetscInt len, *dnz, *onz, *owners, nzi;
1278912837bbSHong Zhang PetscInt nrows, *buf_s, *buf_si, *buf_si_i, **nextrow, **nextci;
1279912837bbSHong Zhang MPI_Request *swaits, *rwaits;
1280912837bbSHong Zhang MPI_Status *sstatus, rstatus;
1281912837bbSHong Zhang PetscLayout rowmap;
1282912837bbSHong Zhang PetscInt *owners_co, *coi, *coj; /* i and j array of (p->B)^T*A*P - used in the communication */
1283912837bbSHong Zhang PetscMPIInt *len_r, *id_r; /* array of length of comm->size, store send/recv matrix values */
12847f3e1f30SHong Zhang PetscInt *Jptr, *prmap = p->garray, con, j, Crmax;
12854ede91e3SHong Zhang Mat_SeqAIJ *a_loc, *c_loc, *c_oth;
1286eec179cfSJacob Faibussowitsch PetscHMapI ta;
1287b92f168fSBarry Smith MatType mtype;
1288e83e5f86SFande Kong const char *prefix;
1289912837bbSHong Zhang
1290912837bbSHong Zhang PetscFunctionBegin;
12919566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)A, &comm));
12929566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size));
12939566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank));
1294912837bbSHong Zhang
12954222ddf1SHong Zhang /* create symbolic parallel matrix C */
12969566063dSJacob Faibussowitsch PetscCall(MatGetType(A, &mtype));
12979566063dSJacob Faibussowitsch PetscCall(MatSetType(C, mtype));
1298912837bbSHong Zhang
12994222ddf1SHong Zhang C->ops->transposematmultnumeric = MatTransposeMatMultNumeric_MPIAIJ_MPIAIJ_nonscalable;
1300912837bbSHong Zhang
1301cc1eb50dSBarry Smith /* create struct MatProductCtx_APMPI and attached it to C later */
13029566063dSJacob Faibussowitsch PetscCall(PetscNew(&ptap));
1303912837bbSHong Zhang
1304912837bbSHong Zhang /* (0) compute Rd = Pd^T, Ro = Po^T */
1305acd337a6SBarry Smith PetscCall(MatTranspose(p->A, MAT_INITIAL_MATRIX, &ptap->Rd));
1306acd337a6SBarry Smith PetscCall(MatTranspose(p->B, MAT_INITIAL_MATRIX, &ptap->Ro));
1307912837bbSHong Zhang
1308669e9c86SHong Zhang /* (1) compute symbolic A_loc */
13099566063dSJacob Faibussowitsch PetscCall(MatMPIAIJGetLocalMat(A, MAT_INITIAL_MATRIX, &ptap->A_loc));
1310912837bbSHong Zhang
13114ede91e3SHong Zhang /* (2-1) compute symbolic C_oth = Ro*A_loc */
13129566063dSJacob Faibussowitsch PetscCall(MatGetOptionsPrefix(A, &prefix));
13139566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(ptap->Ro, prefix));
13149566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(ptap->Ro, "inner_offdiag_"));
13159566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF, &ptap->C_oth));
13169566063dSJacob Faibussowitsch PetscCall(MatMatMultSymbolic_SeqAIJ_SeqAIJ(ptap->Ro, ptap->A_loc, fill, ptap->C_oth));
1317912837bbSHong Zhang
1318912837bbSHong Zhang /* (3) send coj of C_oth to other processors */
1319912837bbSHong Zhang /* determine row ownership */
13209566063dSJacob Faibussowitsch PetscCall(PetscLayoutCreate(comm, &rowmap));
1321912837bbSHong Zhang rowmap->n = pn;
1322912837bbSHong Zhang rowmap->bs = 1;
13239566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(rowmap));
1324912837bbSHong Zhang owners = rowmap->range;
1325912837bbSHong Zhang
1326912837bbSHong Zhang /* determine the number of messages to send, their lengths */
132784648c2dSPierre Jolivet PetscCall(PetscMalloc4(size, &len_s, size, &len_si, size, &sstatus, size + 1, &owners_co));
13289566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(len_s, size));
13299566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(len_si, size));
1330912837bbSHong Zhang
1331912837bbSHong Zhang c_oth = (Mat_SeqAIJ *)ptap->C_oth->data;
13329371c9d4SSatish Balay coi = c_oth->i;
13339371c9d4SSatish Balay coj = c_oth->j;
1334912837bbSHong Zhang con = ptap->C_oth->rmap->n;
1335912837bbSHong Zhang proc = 0;
1336912837bbSHong Zhang for (i = 0; i < con; i++) {
1337912837bbSHong Zhang while (prmap[i] >= owners[proc + 1]) proc++;
13387f3e1f30SHong Zhang len_si[proc]++; /* num of rows in Co(=Pt*A) to be sent to [proc] */
1339912837bbSHong Zhang len_s[proc] += coi[i + 1] - coi[i]; /* num of nonzeros in Co to be sent to [proc] */
1340912837bbSHong Zhang }
1341912837bbSHong Zhang
1342912837bbSHong Zhang len = 0; /* max length of buf_si[], see (4) */
1343912837bbSHong Zhang owners_co[0] = 0;
1344912837bbSHong Zhang nsend = 0;
1345912837bbSHong Zhang for (proc = 0; proc < size; proc++) {
1346912837bbSHong Zhang owners_co[proc + 1] = owners_co[proc] + len_si[proc];
1347912837bbSHong Zhang if (len_s[proc]) {
1348912837bbSHong Zhang nsend++;
1349912837bbSHong Zhang len_si[proc] = 2 * (len_si[proc] + 1); /* length of buf_si to be sent to [proc] */
1350912837bbSHong Zhang len += len_si[proc];
1351912837bbSHong Zhang }
1352912837bbSHong Zhang }
1353912837bbSHong Zhang
1354912837bbSHong Zhang /* determine the number and length of messages to receive for coi and coj */
13559566063dSJacob Faibussowitsch PetscCall(PetscGatherNumberOfMessages(comm, NULL, len_s, &nrecv));
13569566063dSJacob Faibussowitsch PetscCall(PetscGatherMessageLengths2(comm, nsend, nrecv, len_s, len_si, &id_r, &len_r, &len_ri));
1357912837bbSHong Zhang
1358912837bbSHong Zhang /* post the Irecv and Isend of coj */
13599566063dSJacob Faibussowitsch PetscCall(PetscCommGetNewTag(comm, &tagj));
13609566063dSJacob Faibussowitsch PetscCall(PetscPostIrecvInt(comm, tagj, nrecv, id_r, len_r, &buf_rj, &rwaits));
136184648c2dSPierre Jolivet PetscCall(PetscMalloc1(nsend, &swaits));
1362912837bbSHong Zhang for (proc = 0, k = 0; proc < size; proc++) {
1363912837bbSHong Zhang if (!len_s[proc]) continue;
1364912837bbSHong Zhang i = owners_co[proc];
13656497c311SBarry Smith PetscCallMPI(MPIU_Isend(coj + coi[i], len_s[proc], MPIU_INT, proc, tagj, comm, swaits + k));
1366912837bbSHong Zhang k++;
1367912837bbSHong Zhang }
1368912837bbSHong Zhang
13697f3e1f30SHong Zhang /* (2-2) compute symbolic C_loc = Rd*A_loc */
13709566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(ptap->Rd, prefix));
13719566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(ptap->Rd, "inner_diag_"));
13729566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF, &ptap->C_loc));
13739566063dSJacob Faibussowitsch PetscCall(MatMatMultSymbolic_SeqAIJ_SeqAIJ(ptap->Rd, ptap->A_loc, fill, ptap->C_loc));
1374912837bbSHong Zhang c_loc = (Mat_SeqAIJ *)ptap->C_loc->data;
1375912837bbSHong Zhang
1376912837bbSHong Zhang /* receives coj are complete */
137748a46eb9SPierre Jolivet for (i = 0; i < nrecv; i++) PetscCallMPI(MPI_Waitany(nrecv, rwaits, &icompleted, &rstatus));
13789566063dSJacob Faibussowitsch PetscCall(PetscFree(rwaits));
13799566063dSJacob Faibussowitsch if (nsend) PetscCallMPI(MPI_Waitall(nsend, swaits, sstatus));
1380912837bbSHong Zhang
1381912837bbSHong Zhang /* add received column indices into ta to update Crmax */
1382f4f49eeaSPierre Jolivet a_loc = (Mat_SeqAIJ *)ptap->A_loc->data;
1383669e9c86SHong Zhang
1384669e9c86SHong Zhang /* create and initialize a linked list */
1385eec179cfSJacob Faibussowitsch PetscCall(PetscHMapICreateWithSize(an, &ta)); /* for compute Crmax */
13864ede91e3SHong Zhang MatRowMergeMax_SeqAIJ(a_loc, ptap->A_loc->rmap->N, ta);
1387669e9c86SHong Zhang
1388912837bbSHong Zhang for (k = 0; k < nrecv; k++) { /* k-th received message */
1389912837bbSHong Zhang Jptr = buf_rj[k];
1390c76ffc5fSJacob Faibussowitsch for (j = 0; j < len_r[k]; j++) PetscCall(PetscHMapISet(ta, *(Jptr + j) + 1, 1));
1391912837bbSHong Zhang }
1392eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIGetSize(ta, &Crmax));
1393eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIDestroy(&ta));
1394912837bbSHong Zhang
1395912837bbSHong Zhang /* (4) send and recv coi */
13969566063dSJacob Faibussowitsch PetscCall(PetscCommGetNewTag(comm, &tagi));
13979566063dSJacob Faibussowitsch PetscCall(PetscPostIrecvInt(comm, tagi, nrecv, id_r, len_ri, &buf_ri, &rwaits));
139884648c2dSPierre Jolivet PetscCall(PetscMalloc1(len, &buf_s));
1399912837bbSHong Zhang buf_si = buf_s; /* points to the beginning of k-th msg to be sent */
1400912837bbSHong Zhang for (proc = 0, k = 0; proc < size; proc++) {
1401912837bbSHong Zhang if (!len_s[proc]) continue;
1402912837bbSHong Zhang /* form outgoing message for i-structure:
1403912837bbSHong Zhang buf_si[0]: nrows to be sent
1404912837bbSHong Zhang [1:nrows]: row index (global)
1405912837bbSHong Zhang [nrows+1:2*nrows+1]: i-structure index
1406912837bbSHong Zhang */
1407912837bbSHong Zhang nrows = len_si[proc] / 2 - 1; /* num of rows in Co to be sent to [proc] */
1408912837bbSHong Zhang buf_si_i = buf_si + nrows + 1;
1409912837bbSHong Zhang buf_si[0] = nrows;
1410912837bbSHong Zhang buf_si_i[0] = 0;
1411912837bbSHong Zhang nrows = 0;
1412912837bbSHong Zhang for (i = owners_co[proc]; i < owners_co[proc + 1]; i++) {
1413912837bbSHong Zhang nzi = coi[i + 1] - coi[i];
1414912837bbSHong Zhang buf_si_i[nrows + 1] = buf_si_i[nrows] + nzi; /* i-structure */
1415912837bbSHong Zhang buf_si[nrows + 1] = prmap[i] - owners[proc]; /* local row index */
1416912837bbSHong Zhang nrows++;
1417912837bbSHong Zhang }
14186497c311SBarry Smith PetscCallMPI(MPIU_Isend(buf_si, len_si[proc], MPIU_INT, proc, tagi, comm, swaits + k));
1419912837bbSHong Zhang k++;
1420912837bbSHong Zhang buf_si += len_si[proc];
1421912837bbSHong Zhang }
142248a46eb9SPierre Jolivet for (i = 0; i < nrecv; i++) PetscCallMPI(MPI_Waitany(nrecv, rwaits, &icompleted, &rstatus));
14239566063dSJacob Faibussowitsch PetscCall(PetscFree(rwaits));
14249566063dSJacob Faibussowitsch if (nsend) PetscCallMPI(MPI_Waitall(nsend, swaits, sstatus));
1425912837bbSHong Zhang
14269566063dSJacob Faibussowitsch PetscCall(PetscFree4(len_s, len_si, sstatus, owners_co));
14279566063dSJacob Faibussowitsch PetscCall(PetscFree(len_ri));
14289566063dSJacob Faibussowitsch PetscCall(PetscFree(swaits));
14299566063dSJacob Faibussowitsch PetscCall(PetscFree(buf_s));
1430912837bbSHong Zhang
14314222ddf1SHong Zhang /* (5) compute the local portion of C */
1432bbea24aaSStefano Zampini /* set initial free space to be Crmax, sufficient for holding nonzeros in each row of C */
14339566063dSJacob Faibussowitsch PetscCall(PetscFreeSpaceGet(Crmax, &free_space));
1434912837bbSHong Zhang current_space = free_space;
1435912837bbSHong Zhang
14369566063dSJacob Faibussowitsch PetscCall(PetscMalloc3(nrecv, &buf_ri_k, nrecv, &nextrow, nrecv, &nextci));
1437912837bbSHong Zhang for (k = 0; k < nrecv; k++) {
1438912837bbSHong Zhang buf_ri_k[k] = buf_ri[k]; /* beginning of k-th recved i-structure */
1439912837bbSHong Zhang nrows = *buf_ri_k[k];
1440912837bbSHong Zhang nextrow[k] = buf_ri_k[k] + 1; /* next row number of k-th recved i-structure */
1441a5b23f4aSJose E. Roman nextci[k] = buf_ri_k[k] + (nrows + 1); /* points to the next i-structure of k-th recved i-structure */
1442912837bbSHong Zhang }
1443912837bbSHong Zhang
1444d0609cedSBarry Smith MatPreallocateBegin(comm, pn, an, dnz, onz);
14459566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedCreate(Crmax, aN, &lnk, &lnkbt));
14468c78258cSHong Zhang for (i = 0; i < pn; i++) { /* for each local row of C */
14474222ddf1SHong Zhang /* add C_loc into C */
1448912837bbSHong Zhang nzi = c_loc->i[i + 1] - c_loc->i[i];
1449912837bbSHong Zhang Jptr = c_loc->j + c_loc->i[i];
14509566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedAddSorted(nzi, Jptr, lnk, lnkbt));
1451912837bbSHong Zhang
1452912837bbSHong Zhang /* add received col data into lnk */
1453912837bbSHong Zhang for (k = 0; k < nrecv; k++) { /* k-th received message */
1454912837bbSHong Zhang if (i == *nextrow[k]) { /* i-th row */
1455912837bbSHong Zhang nzi = *(nextci[k] + 1) - *nextci[k];
1456912837bbSHong Zhang Jptr = buf_rj[k] + *nextci[k];
14579566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedAddSorted(nzi, Jptr, lnk, lnkbt));
14589371c9d4SSatish Balay nextrow[k]++;
14599371c9d4SSatish Balay nextci[k]++;
1460912837bbSHong Zhang }
1461912837bbSHong Zhang }
14628c78258cSHong Zhang
14638c78258cSHong Zhang /* add missing diagonal entry */
14648c78258cSHong Zhang if (C->force_diagonals) {
14658c78258cSHong Zhang k = i + owners[rank]; /* column index */
14669566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedAddSorted(1, &k, lnk, lnkbt));
14678c78258cSHong Zhang }
14688c78258cSHong Zhang
1469912837bbSHong Zhang nzi = lnk[0];
1470912837bbSHong Zhang
1471912837bbSHong Zhang /* copy data into free space, then initialize lnk */
14729566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedClean(aN, nzi, current_space->array, lnk, lnkbt));
14739566063dSJacob Faibussowitsch PetscCall(MatPreallocateSet(i + owners[rank], nzi, current_space->array, dnz, onz));
1474912837bbSHong Zhang }
14759566063dSJacob Faibussowitsch PetscCall(PetscFree3(buf_ri_k, nextrow, nextci));
14769566063dSJacob Faibussowitsch PetscCall(PetscLLDestroy(lnk, lnkbt));
14779566063dSJacob Faibussowitsch PetscCall(PetscFreeSpaceDestroy(free_space));
1478912837bbSHong Zhang
1479912837bbSHong Zhang /* local sizes and preallocation */
14809566063dSJacob Faibussowitsch PetscCall(MatSetSizes(C, pn, an, PETSC_DETERMINE, PETSC_DETERMINE));
148158b7e2c1SStefano Zampini PetscCall(PetscLayoutSetBlockSize(C->rmap, P->cmap->bs));
148258b7e2c1SStefano Zampini PetscCall(PetscLayoutSetBlockSize(C->cmap, A->cmap->bs));
14839566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(C, 0, dnz, 0, onz));
1484d0609cedSBarry Smith MatPreallocateEnd(dnz, onz);
1485912837bbSHong Zhang
148669be949aSStefano Zampini /* add C_loc and C_oth to C */
14879566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(C, &rstart, NULL));
148869be949aSStefano Zampini for (i = 0; i < pn; i++) {
14898c78258cSHong Zhang ncols = c_loc->i[i + 1] - c_loc->i[i];
14908c78258cSHong Zhang cols = c_loc->j + c_loc->i[i];
14918c78258cSHong Zhang row = rstart + i;
14929566063dSJacob Faibussowitsch PetscCall(MatSetValues(C, 1, (const PetscInt *)&row, ncols, (const PetscInt *)cols, NULL, INSERT_VALUES));
14938c78258cSHong Zhang
149448a46eb9SPierre Jolivet if (C->force_diagonals) PetscCall(MatSetValues(C, 1, (const PetscInt *)&row, 1, (const PetscInt *)&row, NULL, INSERT_VALUES));
149569be949aSStefano Zampini }
149669be949aSStefano Zampini for (i = 0; i < con; i++) {
14978c78258cSHong Zhang ncols = c_oth->i[i + 1] - c_oth->i[i];
14988c78258cSHong Zhang cols = c_oth->j + c_oth->i[i];
14998c78258cSHong Zhang row = prmap[i];
15009566063dSJacob Faibussowitsch PetscCall(MatSetValues(C, 1, (const PetscInt *)&row, ncols, (const PetscInt *)cols, NULL, INSERT_VALUES));
150169be949aSStefano Zampini }
15029566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(C, MAT_FINAL_ASSEMBLY));
15039566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(C, MAT_FINAL_ASSEMBLY));
15049566063dSJacob Faibussowitsch PetscCall(MatSetOption(C, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE));
150569be949aSStefano Zampini
1506912837bbSHong Zhang /* members in merge */
15079566063dSJacob Faibussowitsch PetscCall(PetscFree(id_r));
15089566063dSJacob Faibussowitsch PetscCall(PetscFree(len_r));
15099566063dSJacob Faibussowitsch PetscCall(PetscFree(buf_ri[0]));
15109566063dSJacob Faibussowitsch PetscCall(PetscFree(buf_ri));
15119566063dSJacob Faibussowitsch PetscCall(PetscFree(buf_rj[0]));
15129566063dSJacob Faibussowitsch PetscCall(PetscFree(buf_rj));
15139566063dSJacob Faibussowitsch PetscCall(PetscLayoutDestroy(&rowmap));
1514912837bbSHong Zhang
15154222ddf1SHong Zhang /* attach the supporting struct to C for reuse */
15166718818eSStefano Zampini C->product->data = ptap;
1517cc1eb50dSBarry Smith C->product->destroy = MatProductCtxDestroy_MPIAIJ_PtAP;
15183ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS);
1519912837bbSHong Zhang }
1520912837bbSHong Zhang
MatTransposeMatMultNumeric_MPIAIJ_MPIAIJ_nonscalable(Mat P,Mat A,Mat C)1521d71ae5a4SJacob Faibussowitsch PetscErrorCode MatTransposeMatMultNumeric_MPIAIJ_MPIAIJ_nonscalable(Mat P, Mat A, Mat C)
1522d71ae5a4SJacob Faibussowitsch {
15236718818eSStefano Zampini Mat_MPIAIJ *p = (Mat_MPIAIJ *)P->data;
1524669e9c86SHong Zhang Mat_SeqAIJ *c_seq;
1525cc1eb50dSBarry Smith MatProductCtx_APMPI *ptap;
1526669e9c86SHong Zhang Mat A_loc, C_loc, C_oth;
1527912837bbSHong Zhang PetscInt i, rstart, rend, cm, ncols, row;
1528912837bbSHong Zhang const PetscInt *cols;
1529912837bbSHong Zhang const PetscScalar *vals;
1530912837bbSHong Zhang
1531912837bbSHong Zhang PetscFunctionBegin;
15326718818eSStefano Zampini MatCheckProduct(C, 3);
1533cc1eb50dSBarry Smith ptap = (MatProductCtx_APMPI *)C->product->data;
153428b400f6SJacob Faibussowitsch PetscCheck(ptap, PetscObjectComm((PetscObject)C), PETSC_ERR_ARG_WRONGSTATE, "PtAP cannot be computed. Missing data");
153528b400f6SJacob Faibussowitsch PetscCheck(ptap->A_loc, PetscObjectComm((PetscObject)C), PETSC_ERR_ARG_WRONGSTATE, "PtA cannot be reused. Do not call MatProductClear()");
15369566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(C));
1537912837bbSHong Zhang
1538669e9c86SHong Zhang /* These matrices are obtained in MatTransposeMatMultSymbolic() */
1539669e9c86SHong Zhang /* 1) get R = Pd^T, Ro = Po^T */
15401cdffd5eSHong Zhang PetscCall(MatTransposeSetPrecursor(p->A, ptap->Rd));
1541acd337a6SBarry Smith PetscCall(MatTranspose(p->A, MAT_REUSE_MATRIX, &ptap->Rd));
15421cdffd5eSHong Zhang PetscCall(MatTransposeSetPrecursor(p->B, ptap->Ro));
1543acd337a6SBarry Smith PetscCall(MatTranspose(p->B, MAT_REUSE_MATRIX, &ptap->Ro));
1544669e9c86SHong Zhang
1545669e9c86SHong Zhang /* 2) compute numeric A_loc */
15469566063dSJacob Faibussowitsch PetscCall(MatMPIAIJGetLocalMat(A, MAT_REUSE_MATRIX, &ptap->A_loc));
1547912837bbSHong Zhang
1548669e9c86SHong Zhang /* 3) C_loc = Rd*A_loc, C_oth = Ro*A_loc */
15494ede91e3SHong Zhang A_loc = ptap->A_loc;
1550f4f49eeaSPierre Jolivet PetscCall(ptap->C_loc->ops->matmultnumeric(ptap->Rd, A_loc, ptap->C_loc));
1551f4f49eeaSPierre Jolivet PetscCall(ptap->C_oth->ops->matmultnumeric(ptap->Ro, A_loc, ptap->C_oth));
1552912837bbSHong Zhang C_loc = ptap->C_loc;
1553912837bbSHong Zhang C_oth = ptap->C_oth;
1554912837bbSHong Zhang
155569be949aSStefano Zampini /* add C_loc and C_oth to C */
15569566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(C, &rstart, &rend));
1557912837bbSHong Zhang
1558912837bbSHong Zhang /* C_loc -> C */
1559912837bbSHong Zhang cm = C_loc->rmap->N;
1560912837bbSHong Zhang c_seq = (Mat_SeqAIJ *)C_loc->data;
1561912837bbSHong Zhang cols = c_seq->j;
1562912837bbSHong Zhang vals = c_seq->a;
1563912837bbSHong Zhang for (i = 0; i < cm; i++) {
1564912837bbSHong Zhang ncols = c_seq->i[i + 1] - c_seq->i[i];
1565912837bbSHong Zhang row = rstart + i;
15669566063dSJacob Faibussowitsch PetscCall(MatSetValues(C, 1, &row, ncols, cols, vals, ADD_VALUES));
15679371c9d4SSatish Balay cols += ncols;
15689371c9d4SSatish Balay vals += ncols;
1569912837bbSHong Zhang }
1570912837bbSHong Zhang
1571912837bbSHong Zhang /* Co -> C, off-processor part */
1572912837bbSHong Zhang cm = C_oth->rmap->N;
1573912837bbSHong Zhang c_seq = (Mat_SeqAIJ *)C_oth->data;
1574912837bbSHong Zhang cols = c_seq->j;
1575912837bbSHong Zhang vals = c_seq->a;
1576912837bbSHong Zhang for (i = 0; i < cm; i++) {
1577912837bbSHong Zhang ncols = c_seq->i[i + 1] - c_seq->i[i];
1578912837bbSHong Zhang row = p->garray[i];
15799566063dSJacob Faibussowitsch PetscCall(MatSetValues(C, 1, &row, ncols, cols, vals, ADD_VALUES));
15809371c9d4SSatish Balay cols += ncols;
15819371c9d4SSatish Balay vals += ncols;
1582912837bbSHong Zhang }
15839566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(C, MAT_FINAL_ASSEMBLY));
15849566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(C, MAT_FINAL_ASSEMBLY));
15859566063dSJacob Faibussowitsch PetscCall(MatSetOption(C, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE));
15863ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS);
1587912837bbSHong Zhang }
1588912837bbSHong Zhang
MatTransposeMatMultNumeric_MPIAIJ_MPIAIJ(Mat P,Mat A,Mat C)1589d71ae5a4SJacob Faibussowitsch PetscErrorCode MatTransposeMatMultNumeric_MPIAIJ_MPIAIJ(Mat P, Mat A, Mat C)
1590d71ae5a4SJacob Faibussowitsch {
1591cc1eb50dSBarry Smith MatMergeSeqsToMPI *merge;
15926718818eSStefano Zampini Mat_MPIAIJ *p = (Mat_MPIAIJ *)P->data;
1593f4f49eeaSPierre Jolivet Mat_SeqAIJ *pd = (Mat_SeqAIJ *)p->A->data, *po = (Mat_SeqAIJ *)p->B->data;
1594cc1eb50dSBarry Smith MatProductCtx_APMPI *ap;
1595e745005bSHong Zhang PetscInt *adj;
1596e745005bSHong Zhang PetscInt i, j, k, anz, pnz, row, *cj, nexta;
1597e745005bSHong Zhang MatScalar *ada, *ca, valtmp;
1598d6ab1dc0SHong Zhang PetscInt am = A->rmap->n, cm = C->rmap->n, pon = (p->B)->cmap->n;
1599ce94432eSBarry Smith MPI_Comm comm;
16006497c311SBarry Smith PetscMPIInt size, rank, taga, *len_s, proc;
16016497c311SBarry Smith PetscInt *owners, nrows, **buf_ri_k, **nextrow, **nextci;
1602d6ab1dc0SHong Zhang PetscInt **buf_ri, **buf_rj;
1603d6ab1dc0SHong Zhang PetscInt cnz = 0, *bj_i, *bi, *bj, bnz, nextcj; /* bi,bj,ba: local array of C(mpi mat) */
1604d6ab1dc0SHong Zhang MPI_Request *s_waits, *r_waits;
1605d6ab1dc0SHong Zhang MPI_Status *status;
1606d6ab1dc0SHong Zhang MatScalar **abuf_r, *ba_i, *pA, *coa, *ba;
1607ce496241SStefano Zampini const PetscScalar *dummy;
16084e201bd7SHong Zhang PetscInt *ai, *aj, *coi, *coj, *poJ, *pdJ;
1609d6ab1dc0SHong Zhang Mat A_loc;
1610d6ab1dc0SHong Zhang Mat_SeqAIJ *a_loc;
1611d6ab1dc0SHong Zhang
1612d6ab1dc0SHong Zhang PetscFunctionBegin;
16136718818eSStefano Zampini MatCheckProduct(C, 3);
1614cc1eb50dSBarry Smith ap = (MatProductCtx_APMPI *)C->product->data;
16151cdffd5eSHong Zhang PetscCheck(ap, PetscObjectComm((PetscObject)C), PETSC_ERR_ARG_WRONGSTATE, "PtA cannot be computed. Missing data");
16161cdffd5eSHong Zhang PetscCheck(ap->A_loc, PetscObjectComm((PetscObject)C), PETSC_ERR_ARG_WRONGSTATE, "PtA cannot be reused. Do not call MatProductClear()");
16179566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)C, &comm));
16189566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size));
16199566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank));
1620d6ab1dc0SHong Zhang
16211cdffd5eSHong Zhang merge = ap->merge;
1622d6ab1dc0SHong Zhang
1623e745005bSHong Zhang /* 2) compute numeric C_seq = P_loc^T*A_loc */
1624d6ab1dc0SHong Zhang /* get data from symbolic products */
16259371c9d4SSatish Balay coi = merge->coi;
16269371c9d4SSatish Balay coj = merge->coj;
162784648c2dSPierre Jolivet PetscCall(PetscCalloc1(coi[pon], &coa));
16289371c9d4SSatish Balay bi = merge->bi;
16299371c9d4SSatish Balay bj = merge->bj;
1630d6ab1dc0SHong Zhang owners = merge->rowmap->range;
163184648c2dSPierre Jolivet PetscCall(PetscCalloc1(bi[cm], &ba));
1632d6ab1dc0SHong Zhang
1633d6ab1dc0SHong Zhang /* get A_loc by taking all local rows of A */
16341cdffd5eSHong Zhang A_loc = ap->A_loc;
16359566063dSJacob Faibussowitsch PetscCall(MatMPIAIJGetLocalMat(A, MAT_REUSE_MATRIX, &A_loc));
163657508eceSPierre Jolivet a_loc = (Mat_SeqAIJ *)A_loc->data;
1637d6ab1dc0SHong Zhang ai = a_loc->i;
1638d6ab1dc0SHong Zhang aj = a_loc->j;
1639d6ab1dc0SHong Zhang
1640ce496241SStefano Zampini /* trigger copy to CPU */
16419566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(p->A, &dummy));
16429566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(p->A, &dummy));
16439566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(p->B, &dummy));
16449566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(p->B, &dummy));
1645d6ab1dc0SHong Zhang for (i = 0; i < am; i++) {
1646d6ab1dc0SHong Zhang anz = ai[i + 1] - ai[i];
1647d6ab1dc0SHong Zhang adj = aj + ai[i];
1648d6ab1dc0SHong Zhang ada = a_loc->a + ai[i];
1649d6ab1dc0SHong Zhang
1650d6ab1dc0SHong Zhang /* 2-b) Compute Cseq = P_loc[i,:]^T*A[i,:] using outer product */
1651d6ab1dc0SHong Zhang /* put the value into Co=(p->B)^T*A (off-diagonal part, send to others) */
1652d6ab1dc0SHong Zhang pnz = po->i[i + 1] - po->i[i];
1653d6ab1dc0SHong Zhang poJ = po->j + po->i[i];
1654d6ab1dc0SHong Zhang pA = po->a + po->i[i];
1655d6ab1dc0SHong Zhang for (j = 0; j < pnz; j++) {
1656d6ab1dc0SHong Zhang row = poJ[j];
1657d6ab1dc0SHong Zhang cj = coj + coi[row];
1658d6ab1dc0SHong Zhang ca = coa + coi[row];
1659e745005bSHong Zhang /* perform sparse axpy */
1660e745005bSHong Zhang nexta = 0;
1661d6ab1dc0SHong Zhang valtmp = pA[j];
1662e745005bSHong Zhang for (k = 0; nexta < anz; k++) {
1663e745005bSHong Zhang if (cj[k] == adj[nexta]) {
1664e745005bSHong Zhang ca[k] += valtmp * ada[nexta];
1665e745005bSHong Zhang nexta++;
1666d6ab1dc0SHong Zhang }
1667e745005bSHong Zhang }
16689566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(2.0 * anz));
1669d6ab1dc0SHong Zhang }
1670d6ab1dc0SHong Zhang
1671d6ab1dc0SHong Zhang /* put the value into Cd (diagonal part) */
1672d6ab1dc0SHong Zhang pnz = pd->i[i + 1] - pd->i[i];
1673d6ab1dc0SHong Zhang pdJ = pd->j + pd->i[i];
1674d6ab1dc0SHong Zhang pA = pd->a + pd->i[i];
1675d6ab1dc0SHong Zhang for (j = 0; j < pnz; j++) {
1676d6ab1dc0SHong Zhang row = pdJ[j];
1677d6ab1dc0SHong Zhang cj = bj + bi[row];
1678d6ab1dc0SHong Zhang ca = ba + bi[row];
1679e745005bSHong Zhang /* perform sparse axpy */
1680e745005bSHong Zhang nexta = 0;
1681d6ab1dc0SHong Zhang valtmp = pA[j];
1682e745005bSHong Zhang for (k = 0; nexta < anz; k++) {
1683e745005bSHong Zhang if (cj[k] == adj[nexta]) {
1684e745005bSHong Zhang ca[k] += valtmp * ada[nexta];
1685e745005bSHong Zhang nexta++;
1686d6ab1dc0SHong Zhang }
1687e745005bSHong Zhang }
16889566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(2.0 * anz));
1689d6ab1dc0SHong Zhang }
1690d6ab1dc0SHong Zhang }
1691d6ab1dc0SHong Zhang
1692d6ab1dc0SHong Zhang /* 3) send and recv matrix values coa */
1693d6ab1dc0SHong Zhang buf_ri = merge->buf_ri;
1694d6ab1dc0SHong Zhang buf_rj = merge->buf_rj;
1695d6ab1dc0SHong Zhang len_s = merge->len_s;
16969566063dSJacob Faibussowitsch PetscCall(PetscCommGetNewTag(comm, &taga));
16979566063dSJacob Faibussowitsch PetscCall(PetscPostIrecvScalar(comm, taga, merge->nrecv, merge->id_r, merge->len_r, &abuf_r, &r_waits));
1698d6ab1dc0SHong Zhang
169984648c2dSPierre Jolivet PetscCall(PetscMalloc2(merge->nsend, &s_waits, size, &status));
1700d6ab1dc0SHong Zhang for (proc = 0, k = 0; proc < size; proc++) {
1701d6ab1dc0SHong Zhang if (!len_s[proc]) continue;
1702d6ab1dc0SHong Zhang i = merge->owners_co[proc];
17036497c311SBarry Smith PetscCallMPI(MPIU_Isend(coa + coi[i], len_s[proc], MPIU_MATSCALAR, proc, taga, comm, s_waits + k));
1704d6ab1dc0SHong Zhang k++;
1705d6ab1dc0SHong Zhang }
17069566063dSJacob Faibussowitsch if (merge->nrecv) PetscCallMPI(MPI_Waitall(merge->nrecv, r_waits, status));
17079566063dSJacob Faibussowitsch if (merge->nsend) PetscCallMPI(MPI_Waitall(merge->nsend, s_waits, status));
1708d6ab1dc0SHong Zhang
17099566063dSJacob Faibussowitsch PetscCall(PetscFree2(s_waits, status));
17109566063dSJacob Faibussowitsch PetscCall(PetscFree(r_waits));
17119566063dSJacob Faibussowitsch PetscCall(PetscFree(coa));
1712d6ab1dc0SHong Zhang
1713d6ab1dc0SHong Zhang /* 4) insert local Cseq and received values into Cmpi */
17149566063dSJacob Faibussowitsch PetscCall(PetscMalloc3(merge->nrecv, &buf_ri_k, merge->nrecv, &nextrow, merge->nrecv, &nextci));
1715d6ab1dc0SHong Zhang for (k = 0; k < merge->nrecv; k++) {
1716e745005bSHong Zhang buf_ri_k[k] = buf_ri[k]; /* beginning of k-th recved i-structure */
1717f4f49eeaSPierre Jolivet nrows = *buf_ri_k[k];
1718d6ab1dc0SHong Zhang nextrow[k] = buf_ri_k[k] + 1; /* next row number of k-th recved i-structure */
1719a5b23f4aSJose E. Roman nextci[k] = buf_ri_k[k] + (nrows + 1); /* points to the next i-structure of k-th recved i-structure */
1720d6ab1dc0SHong Zhang }
1721d6ab1dc0SHong Zhang
1722d6ab1dc0SHong Zhang for (i = 0; i < cm; i++) {
1723d6ab1dc0SHong Zhang row = owners[rank] + i; /* global row index of C_seq */
1724d6ab1dc0SHong Zhang bj_i = bj + bi[i]; /* col indices of the i-th row of C */
1725d6ab1dc0SHong Zhang ba_i = ba + bi[i];
1726d6ab1dc0SHong Zhang bnz = bi[i + 1] - bi[i];
1727d6ab1dc0SHong Zhang /* add received vals into ba */
1728d6ab1dc0SHong Zhang for (k = 0; k < merge->nrecv; k++) { /* k-th received message */
1729d6ab1dc0SHong Zhang /* i-th row */
1730d6ab1dc0SHong Zhang if (i == *nextrow[k]) {
1731d6ab1dc0SHong Zhang cnz = *(nextci[k] + 1) - *nextci[k];
1732f4f49eeaSPierre Jolivet cj = buf_rj[k] + *nextci[k];
1733f4f49eeaSPierre Jolivet ca = abuf_r[k] + *nextci[k];
1734d6ab1dc0SHong Zhang nextcj = 0;
1735d6ab1dc0SHong Zhang for (j = 0; nextcj < cnz; j++) {
1736d6ab1dc0SHong Zhang if (bj_i[j] == cj[nextcj]) { /* bcol == ccol */
1737d6ab1dc0SHong Zhang ba_i[j] += ca[nextcj++];
1738d6ab1dc0SHong Zhang }
1739d6ab1dc0SHong Zhang }
17409371c9d4SSatish Balay nextrow[k]++;
17419371c9d4SSatish Balay nextci[k]++;
17429566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(2.0 * cnz));
1743d6ab1dc0SHong Zhang }
1744d6ab1dc0SHong Zhang }
17459566063dSJacob Faibussowitsch PetscCall(MatSetValues(C, 1, &row, bnz, bj_i, ba_i, INSERT_VALUES));
1746d6ab1dc0SHong Zhang }
17479566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(C, MAT_FINAL_ASSEMBLY));
17489566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(C, MAT_FINAL_ASSEMBLY));
1749d6ab1dc0SHong Zhang
17509566063dSJacob Faibussowitsch PetscCall(PetscFree(ba));
17519566063dSJacob Faibussowitsch PetscCall(PetscFree(abuf_r[0]));
17529566063dSJacob Faibussowitsch PetscCall(PetscFree(abuf_r));
17539566063dSJacob Faibussowitsch PetscCall(PetscFree3(buf_ri_k, nextrow, nextci));
17543ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS);
1755d6ab1dc0SHong Zhang }
1756d6ab1dc0SHong Zhang
MatTransposeMatMultSymbolic_MPIAIJ_MPIAIJ(Mat P,Mat A,PetscReal fill,Mat C)1757d71ae5a4SJacob Faibussowitsch PetscErrorCode MatTransposeMatMultSymbolic_MPIAIJ_MPIAIJ(Mat P, Mat A, PetscReal fill, Mat C)
1758d71ae5a4SJacob Faibussowitsch {
1759b419842dSStefano Zampini Mat A_loc;
1760cc1eb50dSBarry Smith MatProductCtx_APMPI *ap;
17610298fd71SBarry Smith PetscFreeSpaceList free_space = NULL, current_space = NULL;
17626718818eSStefano Zampini Mat_MPIAIJ *p = (Mat_MPIAIJ *)P->data, *a = (Mat_MPIAIJ *)A->data;
1763d6ab1dc0SHong Zhang PetscInt *pdti, *pdtj, *poti, *potj, *ptJ;
1764d6ab1dc0SHong Zhang PetscInt nnz;
1765d6ab1dc0SHong Zhang PetscInt *lnk, *owners_co, *coi, *coj, i, k, pnz, row;
1766d6ab1dc0SHong Zhang PetscInt am = A->rmap->n, pn = P->cmap->n;
1767ce94432eSBarry Smith MPI_Comm comm;
17686497c311SBarry Smith PetscMPIInt size, rank, tagi, tagj, *len_si, *len_s, *len_ri, proc;
1769d6ab1dc0SHong Zhang PetscInt **buf_rj, **buf_ri, **buf_ri_k;
17706497c311SBarry Smith PetscInt len, *dnz, *onz, *owners;
1771d6ab1dc0SHong Zhang PetscInt nzi, *bi, *bj;
1772d6ab1dc0SHong Zhang PetscInt nrows, *buf_s, *buf_si, *buf_si_i, **nextrow, **nextci;
1773d6ab1dc0SHong Zhang MPI_Request *swaits, *rwaits;
1774d6ab1dc0SHong Zhang MPI_Status *sstatus, rstatus;
1775cc1eb50dSBarry Smith MatMergeSeqsToMPI *merge;
1776d6ab1dc0SHong Zhang PetscInt *ai, *aj, *Jptr, anz, *prmap = p->garray, pon, nspacedouble = 0, j;
1777d6ab1dc0SHong Zhang PetscReal afill = 1.0, afill_tmp;
1778eec179cfSJacob Faibussowitsch PetscInt rstart = P->cmap->rstart, rmax, Armax;
1779b419842dSStefano Zampini Mat_SeqAIJ *a_loc;
1780eec179cfSJacob Faibussowitsch PetscHMapI ta;
1781b92f168fSBarry Smith MatType mtype;
1782d6ab1dc0SHong Zhang
1783d6ab1dc0SHong Zhang PetscFunctionBegin;
17849566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)A, &comm));
1785d6ab1dc0SHong Zhang /* check if matrix local sizes are compatible */
17869371c9d4SSatish Balay PetscCheck(A->rmap->rstart == P->rmap->rstart && A->rmap->rend == P->rmap->rend, comm, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, A (%" PetscInt_FMT ", %" PetscInt_FMT ") != P (%" PetscInt_FMT ",%" PetscInt_FMT ")", A->rmap->rstart,
17879371c9d4SSatish Balay A->rmap->rend, P->rmap->rstart, P->rmap->rend);
1788d6ab1dc0SHong Zhang
17899566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size));
17909566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank));
1791d6ab1dc0SHong Zhang
1792cc1eb50dSBarry Smith /* create struct MatProductCtx_APMPI and attached it to C later */
17931cdffd5eSHong Zhang PetscCall(PetscNew(&ap));
1794d6ab1dc0SHong Zhang
1795d6ab1dc0SHong Zhang /* get A_loc by taking all local rows of A */
17969566063dSJacob Faibussowitsch PetscCall(MatMPIAIJGetLocalMat(A, MAT_INITIAL_MATRIX, &A_loc));
17972205254eSKarl Rupp
17981cdffd5eSHong Zhang ap->A_loc = A_loc;
179957508eceSPierre Jolivet a_loc = (Mat_SeqAIJ *)A_loc->data;
1800d6ab1dc0SHong Zhang ai = a_loc->i;
1801d6ab1dc0SHong Zhang aj = a_loc->j;
1802d6ab1dc0SHong Zhang
1803d6ab1dc0SHong Zhang /* determine symbolic Co=(p->B)^T*A - send to others */
18049566063dSJacob Faibussowitsch PetscCall(MatGetSymbolicTranspose_SeqAIJ(p->A, &pdti, &pdtj));
18059566063dSJacob Faibussowitsch PetscCall(MatGetSymbolicTranspose_SeqAIJ(p->B, &poti, &potj));
1806d6ab1dc0SHong Zhang pon = (p->B)->cmap->n; /* total num of rows to be sent to other processors
1807d6ab1dc0SHong Zhang >= (num of nonzero rows of C_seq) - pn */
18089566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(pon + 1, &coi));
1809d6ab1dc0SHong Zhang coi[0] = 0;
1810d6ab1dc0SHong Zhang
1811d6ab1dc0SHong Zhang /* set initial free space to be fill*(nnz(p->B) + nnz(A)) */
1812f91af8c7SBarry Smith nnz = PetscRealIntMultTruncate(fill, PetscIntSumTruncate(poti[pon], ai[am]));
18139566063dSJacob Faibussowitsch PetscCall(PetscFreeSpaceGet(nnz, &free_space));
1814d6ab1dc0SHong Zhang current_space = free_space;
181519f0e57aSHong Zhang
1816d6ab1dc0SHong Zhang /* create and initialize a linked list */
1817eec179cfSJacob Faibussowitsch PetscCall(PetscHMapICreateWithSize(A->cmap->n + a->B->cmap->N, &ta));
18184b38b95cSHong Zhang MatRowMergeMax_SeqAIJ(a_loc, am, ta);
1819eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIGetSize(ta, &Armax));
182033ba5e2fSHong Zhang
18219566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedCreate_Scalable(Armax, &lnk));
1822d6ab1dc0SHong Zhang
1823d6ab1dc0SHong Zhang for (i = 0; i < pon; i++) {
1824d6ab1dc0SHong Zhang pnz = poti[i + 1] - poti[i];
1825d6ab1dc0SHong Zhang ptJ = potj + poti[i];
1826d6ab1dc0SHong Zhang for (j = 0; j < pnz; j++) {
1827d6ab1dc0SHong Zhang row = ptJ[j]; /* row of A_loc == col of Pot */
1828d6ab1dc0SHong Zhang anz = ai[row + 1] - ai[row];
1829d6ab1dc0SHong Zhang Jptr = aj + ai[row];
1830d6ab1dc0SHong Zhang /* add non-zero cols of AP into the sorted linked list lnk */
18319566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedAddSorted_Scalable(anz, Jptr, lnk));
1832d6ab1dc0SHong Zhang }
1833d6ab1dc0SHong Zhang nnz = lnk[0];
1834d6ab1dc0SHong Zhang
1835d6ab1dc0SHong Zhang /* If free space is not available, double the total space in the list */
1836d6ab1dc0SHong Zhang if (current_space->local_remaining < nnz) {
18379566063dSJacob Faibussowitsch PetscCall(PetscFreeSpaceGet(PetscIntSumTruncate(nnz, current_space->total_array_size), ¤t_space));
1838d6ab1dc0SHong Zhang nspacedouble++;
1839d6ab1dc0SHong Zhang }
1840d6ab1dc0SHong Zhang
1841d6ab1dc0SHong Zhang /* Copy data into free space, and zero out denserows */
18429566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedClean_Scalable(nnz, current_space->array, lnk));
18432205254eSKarl Rupp
1844d6ab1dc0SHong Zhang current_space->array += nnz;
1845d6ab1dc0SHong Zhang current_space->local_used += nnz;
1846d6ab1dc0SHong Zhang current_space->local_remaining -= nnz;
18472205254eSKarl Rupp
1848d6ab1dc0SHong Zhang coi[i + 1] = coi[i] + nnz;
1849d6ab1dc0SHong Zhang }
1850d6ab1dc0SHong Zhang
185184648c2dSPierre Jolivet PetscCall(PetscMalloc1(coi[pon], &coj));
18529566063dSJacob Faibussowitsch PetscCall(PetscFreeSpaceContiguous(&free_space, coj));
18539566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedDestroy_Scalable(lnk)); /* must destroy to get a new one for C */
18542205254eSKarl Rupp
1855118727c9SMark F. Adams afill_tmp = (PetscReal)coi[pon] / (poti[pon] + ai[am] + 1);
1856d6ab1dc0SHong Zhang if (afill_tmp > afill) afill = afill_tmp;
1857d6ab1dc0SHong Zhang
1858d6ab1dc0SHong Zhang /* send j-array (coj) of Co to other processors */
1859d6ab1dc0SHong Zhang /* determine row ownership */
18609566063dSJacob Faibussowitsch PetscCall(PetscNew(&merge));
18619566063dSJacob Faibussowitsch PetscCall(PetscLayoutCreate(comm, &merge->rowmap));
18622205254eSKarl Rupp
1863d6ab1dc0SHong Zhang merge->rowmap->n = pn;
1864d6ab1dc0SHong Zhang merge->rowmap->bs = 1;
18652205254eSKarl Rupp
18669566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(merge->rowmap));
1867d6ab1dc0SHong Zhang owners = merge->rowmap->range;
1868d6ab1dc0SHong Zhang
1869d6ab1dc0SHong Zhang /* determine the number of messages to send, their lengths */
18709566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(size, &len_si));
18719566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(size, &merge->len_s));
18722205254eSKarl Rupp
1873d6ab1dc0SHong Zhang len_s = merge->len_s;
1874d6ab1dc0SHong Zhang merge->nsend = 0;
1875d6ab1dc0SHong Zhang
187684648c2dSPierre Jolivet PetscCall(PetscMalloc1(size + 1, &owners_co));
1877d6ab1dc0SHong Zhang
1878d6ab1dc0SHong Zhang proc = 0;
1879d6ab1dc0SHong Zhang for (i = 0; i < pon; i++) {
1880d6ab1dc0SHong Zhang while (prmap[i] >= owners[proc + 1]) proc++;
1881d6ab1dc0SHong Zhang len_si[proc]++; /* num of rows in Co to be sent to [proc] */
1882d6ab1dc0SHong Zhang len_s[proc] += coi[i + 1] - coi[i];
1883d6ab1dc0SHong Zhang }
1884d6ab1dc0SHong Zhang
1885d6ab1dc0SHong Zhang len = 0; /* max length of buf_si[] */
1886d6ab1dc0SHong Zhang owners_co[0] = 0;
1887d6ab1dc0SHong Zhang for (proc = 0; proc < size; proc++) {
1888d6ab1dc0SHong Zhang owners_co[proc + 1] = owners_co[proc] + len_si[proc];
1889216f1e5cSPierre Jolivet if (len_s[proc]) {
1890d6ab1dc0SHong Zhang merge->nsend++;
1891d6ab1dc0SHong Zhang len_si[proc] = 2 * (len_si[proc] + 1);
1892d6ab1dc0SHong Zhang len += len_si[proc];
1893d6ab1dc0SHong Zhang }
1894d6ab1dc0SHong Zhang }
1895d6ab1dc0SHong Zhang
1896d6ab1dc0SHong Zhang /* determine the number and length of messages to receive for coi and coj */
18979566063dSJacob Faibussowitsch PetscCall(PetscGatherNumberOfMessages(comm, NULL, len_s, &merge->nrecv));
18989566063dSJacob Faibussowitsch PetscCall(PetscGatherMessageLengths2(comm, merge->nsend, merge->nrecv, len_s, len_si, &merge->id_r, &merge->len_r, &len_ri));
1899d6ab1dc0SHong Zhang
1900d6ab1dc0SHong Zhang /* post the Irecv and Isend of coj */
19019566063dSJacob Faibussowitsch PetscCall(PetscCommGetNewTag(comm, &tagj));
19029566063dSJacob Faibussowitsch PetscCall(PetscPostIrecvInt(comm, tagj, merge->nrecv, merge->id_r, merge->len_r, &buf_rj, &rwaits));
190384648c2dSPierre Jolivet PetscCall(PetscMalloc1(merge->nsend, &swaits));
1904d6ab1dc0SHong Zhang for (proc = 0, k = 0; proc < size; proc++) {
1905d6ab1dc0SHong Zhang if (!len_s[proc]) continue;
1906d6ab1dc0SHong Zhang i = owners_co[proc];
19076497c311SBarry Smith PetscCallMPI(MPIU_Isend(coj + coi[i], len_s[proc], MPIU_INT, proc, tagj, comm, swaits + k));
1908d6ab1dc0SHong Zhang k++;
1909d6ab1dc0SHong Zhang }
1910d6ab1dc0SHong Zhang
1911d6ab1dc0SHong Zhang /* receives and sends of coj are complete */
19129566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(size, &sstatus));
1913d6ab1dc0SHong Zhang for (i = 0; i < merge->nrecv; i++) {
1914ec4bef21SJose E. Roman PETSC_UNUSED PetscMPIInt icompleted;
19159566063dSJacob Faibussowitsch PetscCallMPI(MPI_Waitany(merge->nrecv, rwaits, &icompleted, &rstatus));
1916d6ab1dc0SHong Zhang }
19179566063dSJacob Faibussowitsch PetscCall(PetscFree(rwaits));
19189566063dSJacob Faibussowitsch if (merge->nsend) PetscCallMPI(MPI_Waitall(merge->nsend, swaits, sstatus));
1919d6ab1dc0SHong Zhang
19200acc65b4SHong Zhang /* add received column indices into table to update Armax */
1921c4762a1bSJed Brown /* Armax can be as large as aN if a P[row,:] is dense, see src/ksp/ksp/tutorials/ex56.c! */
19220acc65b4SHong Zhang for (k = 0; k < merge->nrecv; k++) { /* k-th received message */
19230acc65b4SHong Zhang Jptr = buf_rj[k];
1924c76ffc5fSJacob Faibussowitsch for (j = 0; j < merge->len_r[k]; j++) PetscCall(PetscHMapISet(ta, *(Jptr + j) + 1, 1));
19250acc65b4SHong Zhang }
1926eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIGetSize(ta, &Armax));
19270acc65b4SHong Zhang
1928d6ab1dc0SHong Zhang /* send and recv coi */
19299566063dSJacob Faibussowitsch PetscCall(PetscCommGetNewTag(comm, &tagi));
19309566063dSJacob Faibussowitsch PetscCall(PetscPostIrecvInt(comm, tagi, merge->nrecv, merge->id_r, len_ri, &buf_ri, &rwaits));
193184648c2dSPierre Jolivet PetscCall(PetscMalloc1(len, &buf_s));
1932d6ab1dc0SHong Zhang buf_si = buf_s; /* points to the beginning of k-th msg to be sent */
1933d6ab1dc0SHong Zhang for (proc = 0, k = 0; proc < size; proc++) {
1934d6ab1dc0SHong Zhang if (!len_s[proc]) continue;
1935d6ab1dc0SHong Zhang /* form outgoing message for i-structure:
1936d6ab1dc0SHong Zhang buf_si[0]: nrows to be sent
1937d6ab1dc0SHong Zhang [1:nrows]: row index (global)
1938d6ab1dc0SHong Zhang [nrows+1:2*nrows+1]: i-structure index
1939d6ab1dc0SHong Zhang */
1940d6ab1dc0SHong Zhang nrows = len_si[proc] / 2 - 1;
1941d6ab1dc0SHong Zhang buf_si_i = buf_si + nrows + 1;
1942d6ab1dc0SHong Zhang buf_si[0] = nrows;
1943d6ab1dc0SHong Zhang buf_si_i[0] = 0;
1944d6ab1dc0SHong Zhang nrows = 0;
1945d6ab1dc0SHong Zhang for (i = owners_co[proc]; i < owners_co[proc + 1]; i++) {
1946d6ab1dc0SHong Zhang nzi = coi[i + 1] - coi[i];
1947d6ab1dc0SHong Zhang buf_si_i[nrows + 1] = buf_si_i[nrows] + nzi; /* i-structure */
1948d6ab1dc0SHong Zhang buf_si[nrows + 1] = prmap[i] - owners[proc]; /* local row index */
1949d6ab1dc0SHong Zhang nrows++;
1950d6ab1dc0SHong Zhang }
19516497c311SBarry Smith PetscCallMPI(MPIU_Isend(buf_si, len_si[proc], MPIU_INT, proc, tagi, comm, swaits + k));
1952d6ab1dc0SHong Zhang k++;
1953d6ab1dc0SHong Zhang buf_si += len_si[proc];
1954d6ab1dc0SHong Zhang }
1955d6ab1dc0SHong Zhang i = merge->nrecv;
1956d6ab1dc0SHong Zhang while (i--) {
1957ec4bef21SJose E. Roman PETSC_UNUSED PetscMPIInt icompleted;
19589566063dSJacob Faibussowitsch PetscCallMPI(MPI_Waitany(merge->nrecv, rwaits, &icompleted, &rstatus));
1959d6ab1dc0SHong Zhang }
19609566063dSJacob Faibussowitsch PetscCall(PetscFree(rwaits));
19619566063dSJacob Faibussowitsch if (merge->nsend) PetscCallMPI(MPI_Waitall(merge->nsend, swaits, sstatus));
19629566063dSJacob Faibussowitsch PetscCall(PetscFree(len_si));
19639566063dSJacob Faibussowitsch PetscCall(PetscFree(len_ri));
19649566063dSJacob Faibussowitsch PetscCall(PetscFree(swaits));
19659566063dSJacob Faibussowitsch PetscCall(PetscFree(sstatus));
19669566063dSJacob Faibussowitsch PetscCall(PetscFree(buf_s));
1967d6ab1dc0SHong Zhang
1968d6ab1dc0SHong Zhang /* compute the local portion of C (mpi mat) */
1969d6ab1dc0SHong Zhang /* allocate bi array and free space for accumulating nonzero column info */
19709566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(pn + 1, &bi));
1971d6ab1dc0SHong Zhang bi[0] = 0;
1972d6ab1dc0SHong Zhang
1973d6ab1dc0SHong Zhang /* set initial free space to be fill*(nnz(P) + nnz(AP)) */
1974f91af8c7SBarry Smith nnz = PetscRealIntMultTruncate(fill, PetscIntSumTruncate(pdti[pn], PetscIntSumTruncate(poti[pon], ai[am])));
19759566063dSJacob Faibussowitsch PetscCall(PetscFreeSpaceGet(nnz, &free_space));
1976d6ab1dc0SHong Zhang current_space = free_space;
1977d6ab1dc0SHong Zhang
19789566063dSJacob Faibussowitsch PetscCall(PetscMalloc3(merge->nrecv, &buf_ri_k, merge->nrecv, &nextrow, merge->nrecv, &nextci));
1979d6ab1dc0SHong Zhang for (k = 0; k < merge->nrecv; k++) {
1980d6ab1dc0SHong Zhang buf_ri_k[k] = buf_ri[k]; /* beginning of k-th recved i-structure */
1981d6ab1dc0SHong Zhang nrows = *buf_ri_k[k];
1982d6ab1dc0SHong Zhang nextrow[k] = buf_ri_k[k] + 1; /* next row number of k-th recved i-structure */
19832d4ee042Sprj- nextci[k] = buf_ri_k[k] + (nrows + 1); /* points to the next i-structure of k-th received i-structure */
1984d6ab1dc0SHong Zhang }
1985d6ab1dc0SHong Zhang
19869566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedCreate_Scalable(Armax, &lnk));
1987d0609cedSBarry Smith MatPreallocateBegin(comm, pn, A->cmap->n, dnz, onz);
1988d6ab1dc0SHong Zhang rmax = 0;
1989d6ab1dc0SHong Zhang for (i = 0; i < pn; i++) {
1990d6ab1dc0SHong Zhang /* add pdt[i,:]*AP into lnk */
1991d6ab1dc0SHong Zhang pnz = pdti[i + 1] - pdti[i];
1992d6ab1dc0SHong Zhang ptJ = pdtj + pdti[i];
1993d6ab1dc0SHong Zhang for (j = 0; j < pnz; j++) {
1994d6ab1dc0SHong Zhang row = ptJ[j]; /* row of AP == col of Pt */
1995d6ab1dc0SHong Zhang anz = ai[row + 1] - ai[row];
1996d6ab1dc0SHong Zhang Jptr = aj + ai[row];
1997d6ab1dc0SHong Zhang /* add non-zero cols of AP into the sorted linked list lnk */
19989566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedAddSorted_Scalable(anz, Jptr, lnk));
1999d6ab1dc0SHong Zhang }
2000d6ab1dc0SHong Zhang
2001d6ab1dc0SHong Zhang /* add received col data into lnk */
2002d6ab1dc0SHong Zhang for (k = 0; k < merge->nrecv; k++) { /* k-th received message */
2003d6ab1dc0SHong Zhang if (i == *nextrow[k]) { /* i-th row */
2004d6ab1dc0SHong Zhang nzi = *(nextci[k] + 1) - *nextci[k];
2005d6ab1dc0SHong Zhang Jptr = buf_rj[k] + *nextci[k];
20069566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedAddSorted_Scalable(nzi, Jptr, lnk));
20079371c9d4SSatish Balay nextrow[k]++;
20089371c9d4SSatish Balay nextci[k]++;
2009d6ab1dc0SHong Zhang }
2010d6ab1dc0SHong Zhang }
20118c78258cSHong Zhang
20128c78258cSHong Zhang /* add missing diagonal entry */
20138c78258cSHong Zhang if (C->force_diagonals) {
20148c78258cSHong Zhang k = i + owners[rank]; /* column index */
20159566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedAddSorted_Scalable(1, &k, lnk));
20168c78258cSHong Zhang }
20178c78258cSHong Zhang
2018d6ab1dc0SHong Zhang nnz = lnk[0];
2019d6ab1dc0SHong Zhang
2020d6ab1dc0SHong Zhang /* if free space is not available, make more free space */
2021d6ab1dc0SHong Zhang if (current_space->local_remaining < nnz) {
20229566063dSJacob Faibussowitsch PetscCall(PetscFreeSpaceGet(PetscIntSumTruncate(nnz, current_space->total_array_size), ¤t_space));
2023d6ab1dc0SHong Zhang nspacedouble++;
2024d6ab1dc0SHong Zhang }
2025d6ab1dc0SHong Zhang /* copy data into free space, then initialize lnk */
20269566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedClean_Scalable(nnz, current_space->array, lnk));
20279566063dSJacob Faibussowitsch PetscCall(MatPreallocateSet(i + owners[rank], nnz, current_space->array, dnz, onz));
20282205254eSKarl Rupp
2029d6ab1dc0SHong Zhang current_space->array += nnz;
2030d6ab1dc0SHong Zhang current_space->local_used += nnz;
2031d6ab1dc0SHong Zhang current_space->local_remaining -= nnz;
20322205254eSKarl Rupp
2033d6ab1dc0SHong Zhang bi[i + 1] = bi[i] + nnz;
2034d6ab1dc0SHong Zhang if (nnz > rmax) rmax = nnz;
2035d6ab1dc0SHong Zhang }
20369566063dSJacob Faibussowitsch PetscCall(PetscFree3(buf_ri_k, nextrow, nextci));
2037d6ab1dc0SHong Zhang
203884648c2dSPierre Jolivet PetscCall(PetscMalloc1(bi[pn], &bj));
20399566063dSJacob Faibussowitsch PetscCall(PetscFreeSpaceContiguous(&free_space, bj));
2040118727c9SMark F. Adams afill_tmp = (PetscReal)bi[pn] / (pdti[pn] + poti[pon] + ai[am] + 1);
2041d6ab1dc0SHong Zhang if (afill_tmp > afill) afill = afill_tmp;
20429566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedDestroy_Scalable(lnk));
2043eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIDestroy(&ta));
20449566063dSJacob Faibussowitsch PetscCall(MatRestoreSymbolicTranspose_SeqAIJ(p->A, &pdti, &pdtj));
20459566063dSJacob Faibussowitsch PetscCall(MatRestoreSymbolicTranspose_SeqAIJ(p->B, &poti, &potj));
2046d6ab1dc0SHong Zhang
20474222ddf1SHong Zhang /* create symbolic parallel matrix C - why cannot be assembled in Numeric part */
20489566063dSJacob Faibussowitsch PetscCall(MatSetSizes(C, pn, A->cmap->n, PETSC_DETERMINE, PETSC_DETERMINE));
204958b7e2c1SStefano Zampini PetscCall(MatSetBlockSizes(C, P->cmap->bs, A->cmap->bs));
20509566063dSJacob Faibussowitsch PetscCall(MatGetType(A, &mtype));
20519566063dSJacob Faibussowitsch PetscCall(MatSetType(C, mtype));
20529566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(C, 0, dnz, 0, onz));
2053d0609cedSBarry Smith MatPreallocateEnd(dnz, onz);
20549566063dSJacob Faibussowitsch PetscCall(MatSetBlockSize(C, 1));
20559566063dSJacob Faibussowitsch PetscCall(MatSetOption(C, MAT_NO_OFF_PROC_ENTRIES, PETSC_TRUE));
2056d6ab1dc0SHong Zhang for (i = 0; i < pn; i++) {
2057d6ab1dc0SHong Zhang row = i + rstart;
2058d6ab1dc0SHong Zhang nnz = bi[i + 1] - bi[i];
2059d6ab1dc0SHong Zhang Jptr = bj + bi[i];
20609566063dSJacob Faibussowitsch PetscCall(MatSetValues(C, 1, &row, nnz, Jptr, NULL, INSERT_VALUES));
2061d6ab1dc0SHong Zhang }
20629566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(C, MAT_FINAL_ASSEMBLY));
20639566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(C, MAT_FINAL_ASSEMBLY));
20649566063dSJacob Faibussowitsch PetscCall(MatSetOption(C, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE));
2065d6ab1dc0SHong Zhang merge->bi = bi;
2066d6ab1dc0SHong Zhang merge->bj = bj;
2067d6ab1dc0SHong Zhang merge->coi = coi;
2068d6ab1dc0SHong Zhang merge->coj = coj;
2069d6ab1dc0SHong Zhang merge->buf_ri = buf_ri;
2070d6ab1dc0SHong Zhang merge->buf_rj = buf_rj;
2071d6ab1dc0SHong Zhang merge->owners_co = owners_co;
2072d6ab1dc0SHong Zhang
20734222ddf1SHong Zhang /* attach the supporting struct to C for reuse */
20741cdffd5eSHong Zhang C->product->data = ap;
2075cc1eb50dSBarry Smith C->product->destroy = MatProductCtxDestroy_MPIAIJ_PtAP;
20761cdffd5eSHong Zhang ap->merge = merge;
2077a560ef98SHong Zhang
20784222ddf1SHong Zhang C->ops->mattransposemultnumeric = MatTransposeMatMultNumeric_MPIAIJ_MPIAIJ;
2079f96d37fcSHong Zhang
2080f96d37fcSHong Zhang #if defined(PETSC_USE_INFO)
2081f96d37fcSHong Zhang if (bi[pn] != 0) {
20829566063dSJacob Faibussowitsch PetscCall(PetscInfo(C, "Reallocs %" PetscInt_FMT "; Fill ratio: given %g needed %g.\n", nspacedouble, (double)fill, (double)afill));
20839566063dSJacob Faibussowitsch PetscCall(PetscInfo(C, "Use MatTransposeMatMult(A,B,MatReuse,%g,&C) for best performance.\n", (double)afill));
2084f96d37fcSHong Zhang } else {
20859566063dSJacob Faibussowitsch PetscCall(PetscInfo(C, "Empty matrix product\n"));
2086f96d37fcSHong Zhang }
2087f96d37fcSHong Zhang #endif
20883ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS);
2089f96d37fcSHong Zhang }
20904222ddf1SHong Zhang
MatProductSymbolic_AtB_MPIAIJ_MPIAIJ(Mat C)2091d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductSymbolic_AtB_MPIAIJ_MPIAIJ(Mat C)
2092d71ae5a4SJacob Faibussowitsch {
20934222ddf1SHong Zhang Mat_Product *product = C->product;
20944222ddf1SHong Zhang Mat A = product->A, B = product->B;
20954222ddf1SHong Zhang PetscReal fill = product->fill;
20964222ddf1SHong Zhang PetscBool flg;
20974222ddf1SHong Zhang
20984222ddf1SHong Zhang PetscFunctionBegin;
20994222ddf1SHong Zhang /* scalable */
21009566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(product->alg, "scalable", &flg));
21014222ddf1SHong Zhang if (flg) {
21029566063dSJacob Faibussowitsch PetscCall(MatTransposeMatMultSymbolic_MPIAIJ_MPIAIJ(A, B, fill, C));
21034222ddf1SHong Zhang goto next;
21044222ddf1SHong Zhang }
21054222ddf1SHong Zhang
21064222ddf1SHong Zhang /* nonscalable */
21079566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(product->alg, "nonscalable", &flg));
21084222ddf1SHong Zhang if (flg) {
21099566063dSJacob Faibussowitsch PetscCall(MatTransposeMatMultSymbolic_MPIAIJ_MPIAIJ_nonscalable(A, B, fill, C));
21104222ddf1SHong Zhang goto next;
21114222ddf1SHong Zhang }
21124222ddf1SHong Zhang
21134222ddf1SHong Zhang /* matmatmult */
21149566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(product->alg, "at*b", &flg));
21154222ddf1SHong Zhang if (flg) {
21164222ddf1SHong Zhang Mat At;
2117cc1eb50dSBarry Smith MatProductCtx_APMPI *ptap;
21184222ddf1SHong Zhang
21199566063dSJacob Faibussowitsch PetscCall(MatTranspose(A, MAT_INITIAL_MATRIX, &At));
21209566063dSJacob Faibussowitsch PetscCall(MatMatMultSymbolic_MPIAIJ_MPIAIJ(At, B, fill, C));
2121cc1eb50dSBarry Smith ptap = (MatProductCtx_APMPI *)C->product->data;
21224222ddf1SHong Zhang if (ptap) {
21234222ddf1SHong Zhang ptap->Pt = At;
2124cc1eb50dSBarry Smith C->product->destroy = MatProductCtxDestroy_MPIAIJ_PtAP;
21254222ddf1SHong Zhang }
21264222ddf1SHong Zhang C->ops->transposematmultnumeric = MatTransposeMatMultNumeric_MPIAIJ_MPIAIJ_matmatmult;
21274222ddf1SHong Zhang goto next;
21284222ddf1SHong Zhang }
21294222ddf1SHong Zhang
21304e84afc0SStefano Zampini /* backend general code */
21319566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(product->alg, "backend", &flg));
21324e84afc0SStefano Zampini if (flg) {
21339566063dSJacob Faibussowitsch PetscCall(MatProductSymbolic_MPIAIJBACKEND(C));
21343ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS);
21354e84afc0SStefano Zampini }
21364e84afc0SStefano Zampini
21374222ddf1SHong Zhang SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "MatProduct type is not supported");
21384222ddf1SHong Zhang
21394222ddf1SHong Zhang next:
21404222ddf1SHong Zhang C->ops->productnumeric = MatProductNumeric_AtB;
21413ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS);
21424222ddf1SHong Zhang }
21434222ddf1SHong Zhang
21444222ddf1SHong Zhang /* Set options for MatMatMultxxx_MPIAIJ_MPIAIJ */
MatProductSetFromOptions_MPIAIJ_AB(Mat C)2145d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductSetFromOptions_MPIAIJ_AB(Mat C)
2146d71ae5a4SJacob Faibussowitsch {
21474222ddf1SHong Zhang Mat_Product *product = C->product;
21484222ddf1SHong Zhang Mat A = product->A, B = product->B;
21494222ddf1SHong Zhang #if defined(PETSC_HAVE_HYPRE)
21504e84afc0SStefano Zampini const char *algTypes[5] = {"scalable", "nonscalable", "seqmpi", "backend", "hypre"};
21514e84afc0SStefano Zampini PetscInt nalg = 5;
21524222ddf1SHong Zhang #else
21539371c9d4SSatish Balay const char *algTypes[4] = {
21549371c9d4SSatish Balay "scalable",
21559371c9d4SSatish Balay "nonscalable",
21569371c9d4SSatish Balay "seqmpi",
21579371c9d4SSatish Balay "backend",
21589371c9d4SSatish Balay };
21594e84afc0SStefano Zampini PetscInt nalg = 4;
21604222ddf1SHong Zhang #endif
21614222ddf1SHong Zhang PetscInt alg = 1; /* set nonscalable algorithm as default */
21624222ddf1SHong Zhang PetscBool flg;
21634222ddf1SHong Zhang MPI_Comm comm;
21644222ddf1SHong Zhang
21654222ddf1SHong Zhang PetscFunctionBegin;
21669566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)C, &comm));
21674222ddf1SHong Zhang
21684222ddf1SHong Zhang /* Set "nonscalable" as default algorithm */
21699566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(C->product->alg, "default", &flg));
21704222ddf1SHong Zhang if (flg) {
2171835f2295SStefano Zampini PetscCall(MatProductSetAlgorithm(C, algTypes[alg]));
21724222ddf1SHong Zhang
21734222ddf1SHong Zhang /* Set "scalable" as default if BN and local nonzeros of A and B are large */
21744222ddf1SHong Zhang if (B->cmap->N > 100000) { /* may switch to scalable algorithm as default */
21754222ddf1SHong Zhang MatInfo Ainfo, Binfo;
21764222ddf1SHong Zhang PetscInt nz_local;
21774222ddf1SHong Zhang PetscBool alg_scalable_loc = PETSC_FALSE, alg_scalable;
21784222ddf1SHong Zhang
21799566063dSJacob Faibussowitsch PetscCall(MatGetInfo(A, MAT_LOCAL, &Ainfo));
21809566063dSJacob Faibussowitsch PetscCall(MatGetInfo(B, MAT_LOCAL, &Binfo));
21814222ddf1SHong Zhang nz_local = (PetscInt)(Ainfo.nz_allocated + Binfo.nz_allocated);
21824222ddf1SHong Zhang
21834222ddf1SHong Zhang if (B->cmap->N > product->fill * nz_local) alg_scalable_loc = PETSC_TRUE;
21845440e5dcSBarry Smith PetscCallMPI(MPIU_Allreduce(&alg_scalable_loc, &alg_scalable, 1, MPI_C_BOOL, MPI_LOR, comm));
21854222ddf1SHong Zhang
21864222ddf1SHong Zhang if (alg_scalable) {
21874222ddf1SHong Zhang alg = 0; /* scalable algorithm would 50% slower than nonscalable algorithm */
2188835f2295SStefano Zampini PetscCall(MatProductSetAlgorithm(C, algTypes[alg]));
21899566063dSJacob Faibussowitsch PetscCall(PetscInfo(B, "Use scalable algorithm, BN %" PetscInt_FMT ", fill*nz_allocated %g\n", B->cmap->N, (double)(product->fill * nz_local)));
21904222ddf1SHong Zhang }
21914222ddf1SHong Zhang }
21924222ddf1SHong Zhang }
21934222ddf1SHong Zhang
21944222ddf1SHong Zhang /* Get runtime option */
21954222ddf1SHong Zhang if (product->api_user) {
2196d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatMatMult", "Mat");
21979566063dSJacob Faibussowitsch PetscCall(PetscOptionsEList("-matmatmult_via", "Algorithmic approach", "MatMatMult", algTypes, nalg, algTypes[alg], &alg, &flg));
2198d0609cedSBarry Smith PetscOptionsEnd();
21994222ddf1SHong Zhang } else {
2200d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatProduct_AB", "Mat");
22019566063dSJacob Faibussowitsch PetscCall(PetscOptionsEList("-mat_product_algorithm", "Algorithmic approach", "MatMatMult", algTypes, nalg, algTypes[alg], &alg, &flg));
2202d0609cedSBarry Smith PetscOptionsEnd();
22034222ddf1SHong Zhang }
2204835f2295SStefano Zampini if (flg) PetscCall(MatProductSetAlgorithm(C, algTypes[alg]));
22054222ddf1SHong Zhang
22064222ddf1SHong Zhang C->ops->productsymbolic = MatProductSymbolic_AB_MPIAIJ_MPIAIJ;
22073ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS);
22084222ddf1SHong Zhang }
22094222ddf1SHong Zhang
MatProductSetFromOptions_MPIAIJ_ABt(Mat C)2210d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductSetFromOptions_MPIAIJ_ABt(Mat C)
2211d71ae5a4SJacob Faibussowitsch {
22128a9c020eSBarry Smith PetscFunctionBegin;
22138a9c020eSBarry Smith PetscCall(MatProductSetFromOptions_MPIAIJ_AB(C));
22148a9c020eSBarry Smith C->ops->productsymbolic = MatProductSymbolic_ABt_MPIAIJ_MPIAIJ;
22153ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS);
22168a9c020eSBarry Smith }
22178a9c020eSBarry Smith
22184222ddf1SHong Zhang /* Set options for MatTransposeMatMultXXX_MPIAIJ_MPIAIJ */
MatProductSetFromOptions_MPIAIJ_AtB(Mat C)2219d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductSetFromOptions_MPIAIJ_AtB(Mat C)
2220d71ae5a4SJacob Faibussowitsch {
22214222ddf1SHong Zhang Mat_Product *product = C->product;
22224222ddf1SHong Zhang Mat A = product->A, B = product->B;
22234e84afc0SStefano Zampini const char *algTypes[4] = {"scalable", "nonscalable", "at*b", "backend"};
22244e84afc0SStefano Zampini PetscInt nalg = 4;
22254222ddf1SHong Zhang PetscInt alg = 1; /* set default algorithm */
22264222ddf1SHong Zhang PetscBool flg;
22274222ddf1SHong Zhang MPI_Comm comm;
22284222ddf1SHong Zhang
22294222ddf1SHong Zhang PetscFunctionBegin;
22304222ddf1SHong Zhang /* Check matrix local sizes */
22319566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)C, &comm));
22329371c9d4SSatish Balay PetscCheck(A->rmap->rstart == B->rmap->rstart && A->rmap->rend == B->rmap->rend, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, A (%" PetscInt_FMT ", %" PetscInt_FMT ") != B (%" PetscInt_FMT ",%" PetscInt_FMT ")",
22339371c9d4SSatish Balay A->rmap->rstart, A->rmap->rend, B->rmap->rstart, B->rmap->rend);
22344222ddf1SHong Zhang
22354222ddf1SHong Zhang /* Set default algorithm */
22369566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(C->product->alg, "default", &flg));
2237835f2295SStefano Zampini if (flg) PetscCall(MatProductSetAlgorithm(C, algTypes[alg]));
22384222ddf1SHong Zhang
22394222ddf1SHong Zhang /* Set "scalable" as default if BN and local nonzeros of A and B are large */
22404222ddf1SHong Zhang if (alg && B->cmap->N > 100000) { /* may switch to scalable algorithm as default */
22414222ddf1SHong Zhang MatInfo Ainfo, Binfo;
22424222ddf1SHong Zhang PetscInt nz_local;
22434222ddf1SHong Zhang PetscBool alg_scalable_loc = PETSC_FALSE, alg_scalable;
22444222ddf1SHong Zhang
22459566063dSJacob Faibussowitsch PetscCall(MatGetInfo(A, MAT_LOCAL, &Ainfo));
22469566063dSJacob Faibussowitsch PetscCall(MatGetInfo(B, MAT_LOCAL, &Binfo));
22474222ddf1SHong Zhang nz_local = (PetscInt)(Ainfo.nz_allocated + Binfo.nz_allocated);
22484222ddf1SHong Zhang
22494222ddf1SHong Zhang if (B->cmap->N > product->fill * nz_local) alg_scalable_loc = PETSC_TRUE;
22505440e5dcSBarry Smith PetscCallMPI(MPIU_Allreduce(&alg_scalable_loc, &alg_scalable, 1, MPI_C_BOOL, MPI_LOR, comm));
22514222ddf1SHong Zhang
22524222ddf1SHong Zhang if (alg_scalable) {
22534222ddf1SHong Zhang alg = 0; /* scalable algorithm would 50% slower than nonscalable algorithm */
2254835f2295SStefano Zampini PetscCall(MatProductSetAlgorithm(C, algTypes[alg]));
22559566063dSJacob Faibussowitsch PetscCall(PetscInfo(B, "Use scalable algorithm, BN %" PetscInt_FMT ", fill*nz_allocated %g\n", B->cmap->N, (double)(product->fill * nz_local)));
22564222ddf1SHong Zhang }
22574222ddf1SHong Zhang }
22584222ddf1SHong Zhang
22594222ddf1SHong Zhang /* Get runtime option */
22604222ddf1SHong Zhang if (product->api_user) {
2261d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatTransposeMatMult", "Mat");
22629566063dSJacob Faibussowitsch PetscCall(PetscOptionsEList("-mattransposematmult_via", "Algorithmic approach", "MatTransposeMatMult", algTypes, nalg, algTypes[alg], &alg, &flg));
2263d0609cedSBarry Smith PetscOptionsEnd();
22644222ddf1SHong Zhang } else {
2265d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatProduct_AtB", "Mat");
22669566063dSJacob Faibussowitsch PetscCall(PetscOptionsEList("-mat_product_algorithm", "Algorithmic approach", "MatTransposeMatMult", algTypes, nalg, algTypes[alg], &alg, &flg));
2267d0609cedSBarry Smith PetscOptionsEnd();
22684222ddf1SHong Zhang }
2269835f2295SStefano Zampini if (flg) PetscCall(MatProductSetAlgorithm(C, algTypes[alg]));
22704222ddf1SHong Zhang
22714222ddf1SHong Zhang C->ops->productsymbolic = MatProductSymbolic_AtB_MPIAIJ_MPIAIJ;
22723ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS);
22734222ddf1SHong Zhang }
22744222ddf1SHong Zhang
MatProductSetFromOptions_MPIAIJ_PtAP(Mat C)2275d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductSetFromOptions_MPIAIJ_PtAP(Mat C)
2276d71ae5a4SJacob Faibussowitsch {
22774222ddf1SHong Zhang Mat_Product *product = C->product;
22784222ddf1SHong Zhang Mat A = product->A, P = product->B;
22794222ddf1SHong Zhang MPI_Comm comm;
22804222ddf1SHong Zhang PetscBool flg;
22814222ddf1SHong Zhang PetscInt alg = 1; /* set default algorithm */
22824222ddf1SHong Zhang #if !defined(PETSC_HAVE_HYPRE)
22834e84afc0SStefano Zampini const char *algTypes[5] = {"scalable", "nonscalable", "allatonce", "allatonce_merged", "backend"};
22844222ddf1SHong Zhang PetscInt nalg = 5;
22854e84afc0SStefano Zampini #else
22864e84afc0SStefano Zampini const char *algTypes[6] = {"scalable", "nonscalable", "allatonce", "allatonce_merged", "backend", "hypre"};
22874e84afc0SStefano Zampini PetscInt nalg = 6;
22884222ddf1SHong Zhang #endif
22894222ddf1SHong Zhang PetscInt pN = P->cmap->N;
22904222ddf1SHong Zhang
22914222ddf1SHong Zhang PetscFunctionBegin;
22924222ddf1SHong Zhang /* Check matrix local sizes */
22939566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)C, &comm));
22949371c9d4SSatish Balay PetscCheck(A->rmap->rstart == P->rmap->rstart && A->rmap->rend == P->rmap->rend, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, Arow (%" PetscInt_FMT ", %" PetscInt_FMT ") != Prow (%" PetscInt_FMT ",%" PetscInt_FMT ")",
22959371c9d4SSatish Balay A->rmap->rstart, A->rmap->rend, P->rmap->rstart, P->rmap->rend);
22969371c9d4SSatish Balay PetscCheck(A->cmap->rstart == P->rmap->rstart && A->cmap->rend == P->rmap->rend, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, Acol (%" PetscInt_FMT ", %" PetscInt_FMT ") != Prow (%" PetscInt_FMT ",%" PetscInt_FMT ")",
22979371c9d4SSatish Balay A->cmap->rstart, A->cmap->rend, P->rmap->rstart, P->rmap->rend);
22984222ddf1SHong Zhang
22994222ddf1SHong Zhang /* Set "nonscalable" as default algorithm */
23009566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(C->product->alg, "default", &flg));
23014222ddf1SHong Zhang if (flg) {
2302835f2295SStefano Zampini PetscCall(MatProductSetAlgorithm(C, algTypes[alg]));
23034222ddf1SHong Zhang
23044222ddf1SHong Zhang /* Set "scalable" as default if BN and local nonzeros of A and B are large */
23054222ddf1SHong Zhang if (pN > 100000) {
23064222ddf1SHong Zhang MatInfo Ainfo, Pinfo;
23074222ddf1SHong Zhang PetscInt nz_local;
23084222ddf1SHong Zhang PetscBool alg_scalable_loc = PETSC_FALSE, alg_scalable;
23094222ddf1SHong Zhang
23109566063dSJacob Faibussowitsch PetscCall(MatGetInfo(A, MAT_LOCAL, &Ainfo));
23119566063dSJacob Faibussowitsch PetscCall(MatGetInfo(P, MAT_LOCAL, &Pinfo));
23124222ddf1SHong Zhang nz_local = (PetscInt)(Ainfo.nz_allocated + Pinfo.nz_allocated);
23134222ddf1SHong Zhang
23144222ddf1SHong Zhang if (pN > product->fill * nz_local) alg_scalable_loc = PETSC_TRUE;
23155440e5dcSBarry Smith PetscCallMPI(MPIU_Allreduce(&alg_scalable_loc, &alg_scalable, 1, MPI_C_BOOL, MPI_LOR, comm));
23164222ddf1SHong Zhang
23174222ddf1SHong Zhang if (alg_scalable) {
23184222ddf1SHong Zhang alg = 0; /* scalable algorithm would 50% slower than nonscalable algorithm */
2319835f2295SStefano Zampini PetscCall(MatProductSetAlgorithm(C, algTypes[alg]));
23204222ddf1SHong Zhang }
23214222ddf1SHong Zhang }
23224222ddf1SHong Zhang }
23234222ddf1SHong Zhang
23244222ddf1SHong Zhang /* Get runtime option */
23254222ddf1SHong Zhang if (product->api_user) {
2326d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatPtAP", "Mat");
23279566063dSJacob Faibussowitsch PetscCall(PetscOptionsEList("-matptap_via", "Algorithmic approach", "MatPtAP", algTypes, nalg, algTypes[alg], &alg, &flg));
2328d0609cedSBarry Smith PetscOptionsEnd();
23294222ddf1SHong Zhang } else {
2330d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatProduct_PtAP", "Mat");
23319566063dSJacob Faibussowitsch PetscCall(PetscOptionsEList("-mat_product_algorithm", "Algorithmic approach", "MatPtAP", algTypes, nalg, algTypes[alg], &alg, &flg));
2332d0609cedSBarry Smith PetscOptionsEnd();
23334222ddf1SHong Zhang }
2334835f2295SStefano Zampini if (flg) PetscCall(MatProductSetAlgorithm(C, algTypes[alg]));
23354222ddf1SHong Zhang
23364222ddf1SHong Zhang C->ops->productsymbolic = MatProductSymbolic_PtAP_MPIAIJ_MPIAIJ;
23373ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS);
23384222ddf1SHong Zhang }
23394222ddf1SHong Zhang
MatProductSetFromOptions_MPIAIJ_RARt(Mat C)2340d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductSetFromOptions_MPIAIJ_RARt(Mat C)
2341d71ae5a4SJacob Faibussowitsch {
23424222ddf1SHong Zhang Mat_Product *product = C->product;
23434222ddf1SHong Zhang Mat A = product->A, R = product->B;
23444222ddf1SHong Zhang
23454222ddf1SHong Zhang PetscFunctionBegin;
23464222ddf1SHong Zhang /* Check matrix local sizes */
23479371c9d4SSatish Balay PetscCheck(A->cmap->n == R->cmap->n && A->rmap->n == R->cmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, A local (%" PetscInt_FMT ", %" PetscInt_FMT "), R local (%" PetscInt_FMT ",%" PetscInt_FMT ")", A->rmap->n,
23489371c9d4SSatish Balay A->rmap->n, R->rmap->n, R->cmap->n);
23494222ddf1SHong Zhang
23504222ddf1SHong Zhang C->ops->productsymbolic = MatProductSymbolic_RARt_MPIAIJ_MPIAIJ;
23513ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS);
23524222ddf1SHong Zhang }
23534222ddf1SHong Zhang
23544222ddf1SHong Zhang /*
23554222ddf1SHong Zhang Set options for ABC = A*B*C = A*(B*C); ABC's algorithm must be chosen from AB's algorithm
23564222ddf1SHong Zhang */
MatProductSetFromOptions_MPIAIJ_ABC(Mat C)2357d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductSetFromOptions_MPIAIJ_ABC(Mat C)
2358d71ae5a4SJacob Faibussowitsch {
23594222ddf1SHong Zhang Mat_Product *product = C->product;
23604222ddf1SHong Zhang PetscBool flg = PETSC_FALSE;
23614222ddf1SHong Zhang PetscInt alg = 1; /* default algorithm */
23624222ddf1SHong Zhang const char *algTypes[3] = {"scalable", "nonscalable", "seqmpi"};
23634222ddf1SHong Zhang PetscInt nalg = 3;
23644222ddf1SHong Zhang
23654222ddf1SHong Zhang PetscFunctionBegin;
23664222ddf1SHong Zhang /* Set default algorithm */
23679566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(C->product->alg, "default", &flg));
2368835f2295SStefano Zampini if (flg) PetscCall(MatProductSetAlgorithm(C, algTypes[alg]));
23694222ddf1SHong Zhang
23704222ddf1SHong Zhang /* Get runtime option */
23714222ddf1SHong Zhang if (product->api_user) {
2372d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatMatMatMult", "Mat");
23739566063dSJacob Faibussowitsch PetscCall(PetscOptionsEList("-matmatmatmult_via", "Algorithmic approach", "MatMatMatMult", algTypes, nalg, algTypes[alg], &alg, &flg));
2374d0609cedSBarry Smith PetscOptionsEnd();
23754222ddf1SHong Zhang } else {
2376d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatProduct_ABC", "Mat");
23779566063dSJacob Faibussowitsch PetscCall(PetscOptionsEList("-mat_product_algorithm", "Algorithmic approach", "MatProduct_ABC", algTypes, nalg, algTypes[alg], &alg, &flg));
2378d0609cedSBarry Smith PetscOptionsEnd();
23794222ddf1SHong Zhang }
2380835f2295SStefano Zampini if (flg) PetscCall(MatProductSetAlgorithm(C, algTypes[alg]));
23814222ddf1SHong Zhang
23824222ddf1SHong Zhang C->ops->matmatmultsymbolic = MatMatMatMultSymbolic_MPIAIJ_MPIAIJ_MPIAIJ;
23834222ddf1SHong Zhang C->ops->productsymbolic = MatProductSymbolic_ABC;
23843ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS);
23854222ddf1SHong Zhang }
23864222ddf1SHong Zhang
MatProductSetFromOptions_MPIAIJ(Mat C)2387d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatProductSetFromOptions_MPIAIJ(Mat C)
2388d71ae5a4SJacob Faibussowitsch {
23894222ddf1SHong Zhang Mat_Product *product = C->product;
23904222ddf1SHong Zhang
23914222ddf1SHong Zhang PetscFunctionBegin;
23924222ddf1SHong Zhang switch (product->type) {
2393d71ae5a4SJacob Faibussowitsch case MATPRODUCT_AB:
2394d71ae5a4SJacob Faibussowitsch PetscCall(MatProductSetFromOptions_MPIAIJ_AB(C));
2395d71ae5a4SJacob Faibussowitsch break;
2396d71ae5a4SJacob Faibussowitsch case MATPRODUCT_ABt:
2397d71ae5a4SJacob Faibussowitsch PetscCall(MatProductSetFromOptions_MPIAIJ_ABt(C));
2398d71ae5a4SJacob Faibussowitsch break;
2399d71ae5a4SJacob Faibussowitsch case MATPRODUCT_AtB:
2400d71ae5a4SJacob Faibussowitsch PetscCall(MatProductSetFromOptions_MPIAIJ_AtB(C));
2401d71ae5a4SJacob Faibussowitsch break;
2402d71ae5a4SJacob Faibussowitsch case MATPRODUCT_PtAP:
2403d71ae5a4SJacob Faibussowitsch PetscCall(MatProductSetFromOptions_MPIAIJ_PtAP(C));
2404d71ae5a4SJacob Faibussowitsch break;
2405d71ae5a4SJacob Faibussowitsch case MATPRODUCT_RARt:
2406d71ae5a4SJacob Faibussowitsch PetscCall(MatProductSetFromOptions_MPIAIJ_RARt(C));
2407d71ae5a4SJacob Faibussowitsch break;
2408d71ae5a4SJacob Faibussowitsch case MATPRODUCT_ABC:
2409d71ae5a4SJacob Faibussowitsch PetscCall(MatProductSetFromOptions_MPIAIJ_ABC(C));
2410d71ae5a4SJacob Faibussowitsch break;
2411d71ae5a4SJacob Faibussowitsch default:
2412d71ae5a4SJacob Faibussowitsch break;
24134222ddf1SHong Zhang }
24143ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS);
24154222ddf1SHong Zhang }
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