xref: /petsc/src/mat/impls/aij/mpi/superlu_dist/superlu_dist.c (revision 37eeb8152ec6a2cf24186d3591c2c5de5dfd8fa5)
1 
2 /*
3         Provides an interface to the SuperLU_DIST sparse solver
4 */
5 
6 #include <../src/mat/impls/aij/seq/aij.h>
7 #include <../src/mat/impls/aij/mpi/mpiaij.h>
8 #if defined(PETSC_HAVE_STDLIB_H) /* This is to get around weird problem with SuperLU on cray */
9 #include <stdlib.h>
10 #endif
11 
12 EXTERN_C_BEGIN
13 #if defined(PETSC_USE_COMPLEX)
14 #include <superlu_zdefs.h>
15 #else
16 #include <superlu_ddefs.h>
17 #endif
18 EXTERN_C_END
19 
20 typedef struct {
21   int_t                  nprow,npcol,*row,*col;
22   gridinfo_t             grid;
23   superlu_dist_options_t options;
24   SuperMatrix            A_sup;
25   ScalePermstruct_t      ScalePermstruct;
26   LUstruct_t             LUstruct;
27   int                    StatPrint;
28   SOLVEstruct_t          SOLVEstruct;
29   fact_t                 FactPattern;
30   MPI_Comm               comm_superlu;
31 #if defined(PETSC_USE_COMPLEX)
32   doublecomplex          *val;
33 #else
34   double                 *val;
35 #endif
36   PetscBool              matsolve_iscalled,matmatsolve_iscalled;
37   PetscBool              CleanUpSuperLU_Dist;  /* Flag to clean up (non-global) SuperLU objects during Destroy */
38 } Mat_SuperLU_DIST;
39 
40 
41 PetscErrorCode MatSuperluDistGetDiagU_SuperLU_DIST(Mat F,PetscScalar *diagU)
42 {
43   Mat_SuperLU_DIST  *lu= (Mat_SuperLU_DIST*)F->data;
44 
45   PetscFunctionBegin;
46 #if defined(PETSC_USE_COMPLEX)
47   PetscStackCall("SuperLU_DIST:pzGetDiagU",pzGetDiagU(F->rmap->N,&lu->LUstruct,&lu->grid,(doublecomplex*)diagU));
48 #else
49   PetscStackCall("SuperLU_DIST:pdGetDiagU",pdGetDiagU(F->rmap->N,&lu->LUstruct,&lu->grid,diagU));
50 #endif
51   PetscFunctionReturn(0);
52 }
53 
54 PetscErrorCode MatSuperluDistGetDiagU(Mat F,PetscScalar *diagU)
55 {
56   PetscErrorCode ierr;
57 
58   PetscFunctionBegin;
59   PetscValidHeaderSpecific(F,MAT_CLASSID,1);
60   ierr = PetscTryMethod(F,"MatSuperluDistGetDiagU_C",(Mat,PetscScalar*),(F,diagU));CHKERRQ(ierr);
61   PetscFunctionReturn(0);
62 }
63 
64 static PetscErrorCode MatDestroy_SuperLU_DIST(Mat A)
65 {
66   PetscErrorCode   ierr;
67   Mat_SuperLU_DIST *lu = (Mat_SuperLU_DIST*)A->data;
68 
69   PetscFunctionBegin;
70   if (lu->CleanUpSuperLU_Dist) {
71     /* Deallocate SuperLU_DIST storage */
72     PetscStackCall("SuperLU_DIST:Destroy_CompRowLoc_Matrix_dist",Destroy_CompRowLoc_Matrix_dist(&lu->A_sup));
73     if (lu->options.SolveInitialized) {
74 #if defined(PETSC_USE_COMPLEX)
75       PetscStackCall("SuperLU_DIST:zSolveFinalize",zSolveFinalize(&lu->options, &lu->SOLVEstruct));
76 #else
77       PetscStackCall("SuperLU_DIST:dSolveFinalize",dSolveFinalize(&lu->options, &lu->SOLVEstruct));
78 #endif
79     }
80     PetscStackCall("SuperLU_DIST:Destroy_LU",Destroy_LU(A->cmap->N, &lu->grid, &lu->LUstruct));
81     PetscStackCall("SuperLU_DIST:ScalePermstructFree",ScalePermstructFree(&lu->ScalePermstruct));
82     PetscStackCall("SuperLU_DIST:LUstructFree",LUstructFree(&lu->LUstruct));
83 
84     /* Release the SuperLU_DIST process grid. */
85     PetscStackCall("SuperLU_DIST:superlu_gridexit",superlu_gridexit(&lu->grid));
86     ierr = MPI_Comm_free(&(lu->comm_superlu));CHKERRQ(ierr);
87   }
88   ierr = PetscFree(A->data);CHKERRQ(ierr);
89   /* clear composed functions */
90   ierr = PetscObjectComposeFunction((PetscObject)A,"MatFactorGetSolverType_C",NULL);CHKERRQ(ierr);
91   ierr = PetscObjectComposeFunction((PetscObject)A,"MatSuperluDistGetDiagU_C",NULL);CHKERRQ(ierr);
92 
93   PetscFunctionReturn(0);
94 }
95 
96 static PetscErrorCode MatSolve_SuperLU_DIST(Mat A,Vec b_mpi,Vec x)
97 {
98   Mat_SuperLU_DIST *lu = (Mat_SuperLU_DIST*)A->data;
99   PetscErrorCode   ierr;
100   PetscMPIInt      size;
101   PetscInt         m=A->rmap->n;
102   SuperLUStat_t    stat;
103   double           berr[1];
104   PetscScalar      *bptr=NULL;
105   int              info; /* SuperLU_Dist info code is ALWAYS an int, even with long long indices */
106   static PetscBool cite = PETSC_FALSE;
107 
108   PetscFunctionBegin;
109   if (lu->options.Fact != FACTORED) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"SuperLU_DIST options.Fact mush equal FACTORED");
110   ierr = PetscCitationsRegister("@article{lidemmel03,\n  author = {Xiaoye S. Li and James W. Demmel},\n  title = {{SuperLU_DIST}: A Scalable Distributed-Memory Sparse Direct\n           Solver for Unsymmetric Linear Systems},\n  journal = {ACM Trans. Mathematical Software},\n  volume = {29},\n  number = {2},\n  pages = {110-140},\n  year = 2003\n}\n",&cite);CHKERRQ(ierr);
111 
112   ierr = MPI_Comm_size(PetscObjectComm((PetscObject)A),&size);CHKERRQ(ierr);
113 
114   if (lu->options.SolveInitialized && !lu->matsolve_iscalled) {
115     /* see comments in MatMatSolve() */
116 #if defined(PETSC_USE_COMPLEX)
117     PetscStackCall("SuperLU_DIST:zSolveFinalize",zSolveFinalize(&lu->options, &lu->SOLVEstruct));
118 #else
119     PetscStackCall("SuperLU_DIST:dSolveFinalize",dSolveFinalize(&lu->options, &lu->SOLVEstruct));
120 #endif
121     lu->options.SolveInitialized = NO;
122   }
123   ierr = VecCopy(b_mpi,x);CHKERRQ(ierr);
124   ierr = VecGetArray(x,&bptr);CHKERRQ(ierr);
125 
126   PetscStackCall("SuperLU_DIST:PStatInit",PStatInit(&stat));        /* Initialize the statistics variables. */
127 #if defined(PETSC_USE_COMPLEX)
128     PetscStackCall("SuperLU_DIST:pzgssvx",pzgssvx(&lu->options,&lu->A_sup,&lu->ScalePermstruct,(doublecomplex*)bptr,m,1,&lu->grid,&lu->LUstruct,&lu->SOLVEstruct,berr,&stat,&info));
129 #else
130     PetscStackCall("SuperLU_DIST:pdgssvx",pdgssvx(&lu->options,&lu->A_sup,&lu->ScalePermstruct,bptr,m,1,&lu->grid,&lu->LUstruct,&lu->SOLVEstruct,berr,&stat,&info));
131 #endif
132   if (info) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_LIB,"pdgssvx fails, info: %d\n",info);
133 
134   if (lu->options.PrintStat) PStatPrint(&lu->options, &stat, &lu->grid);      /* Print the statistics. */
135   PetscStackCall("SuperLU_DIST:PStatFree",PStatFree(&stat));
136 
137   ierr = VecRestoreArray(x,&bptr);CHKERRQ(ierr);
138   lu->matsolve_iscalled    = PETSC_TRUE;
139   lu->matmatsolve_iscalled = PETSC_FALSE;
140   PetscFunctionReturn(0);
141 }
142 
143 static PetscErrorCode MatMatSolve_SuperLU_DIST(Mat A,Mat B_mpi,Mat X)
144 {
145   Mat_SuperLU_DIST *lu = (Mat_SuperLU_DIST*)A->data;
146   PetscErrorCode   ierr;
147   PetscMPIInt      size;
148   PetscInt         m=A->rmap->n,nrhs;
149   SuperLUStat_t    stat;
150   double           berr[1];
151   PetscScalar      *bptr;
152   int              info; /* SuperLU_Dist info code is ALWAYS an int, even with long long indices */
153   PetscBool        flg;
154 
155   PetscFunctionBegin;
156   if (lu->options.Fact != FACTORED) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"SuperLU_DIST options.Fact mush equal FACTORED");
157   ierr = PetscObjectTypeCompareAny((PetscObject)B_mpi,&flg,MATSEQDENSE,MATMPIDENSE,NULL);CHKERRQ(ierr);
158   if (!flg) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ARG_WRONG,"Matrix B must be MATDENSE matrix");
159   ierr = PetscObjectTypeCompareAny((PetscObject)X,&flg,MATSEQDENSE,MATMPIDENSE,NULL);CHKERRQ(ierr);
160   if (!flg) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ARG_WRONG,"Matrix X must be MATDENSE matrix");
161 
162   ierr = MPI_Comm_size(PetscObjectComm((PetscObject)A),&size);CHKERRQ(ierr);
163 
164   if (lu->options.SolveInitialized && !lu->matmatsolve_iscalled) {
165     /* communication pattern of SOLVEstruct is unlikely created for matmatsolve,
166        thus destroy it and create a new SOLVEstruct.
167        Otherwise it may result in memory corruption or incorrect solution
168        See src/mat/examples/tests/ex125.c */
169 #if defined(PETSC_USE_COMPLEX)
170     PetscStackCall("SuperLU_DIST:zSolveFinalize",zSolveFinalize(&lu->options, &lu->SOLVEstruct));
171 #else
172     PetscStackCall("SuperLU_DIST:dSolveFinalize",dSolveFinalize(&lu->options, &lu->SOLVEstruct));
173 #endif
174     lu->options.SolveInitialized = NO;
175   }
176   ierr = MatCopy(B_mpi,X,SAME_NONZERO_PATTERN);CHKERRQ(ierr);
177 
178   ierr = MatGetSize(B_mpi,NULL,&nrhs);CHKERRQ(ierr);
179 
180   PetscStackCall("SuperLU_DIST:PStatInit",PStatInit(&stat));        /* Initialize the statistics variables. */
181   ierr = MatDenseGetArray(X,&bptr);CHKERRQ(ierr);
182 
183 #if defined(PETSC_USE_COMPLEX)
184   PetscStackCall("SuperLU_DIST:pzgssvx",pzgssvx(&lu->options,&lu->A_sup,&lu->ScalePermstruct,(doublecomplex*)bptr,m,nrhs,&lu->grid, &lu->LUstruct,&lu->SOLVEstruct,berr,&stat,&info));
185 #else
186   PetscStackCall("SuperLU_DIST:pdgssvx",pdgssvx(&lu->options,&lu->A_sup,&lu->ScalePermstruct,bptr,m,nrhs,&lu->grid,&lu->LUstruct,&lu->SOLVEstruct,berr,&stat,&info));
187 #endif
188 
189   if (info) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_LIB,"pdgssvx fails, info: %d\n",info);
190   ierr = MatDenseRestoreArray(X,&bptr);CHKERRQ(ierr);
191 
192   if (lu->options.PrintStat) PStatPrint(&lu->options, &stat, &lu->grid); /* Print the statistics. */
193   PetscStackCall("SuperLU_DIST:PStatFree",PStatFree(&stat));
194   lu->matsolve_iscalled    = PETSC_FALSE;
195   lu->matmatsolve_iscalled = PETSC_TRUE;
196   PetscFunctionReturn(0);
197 }
198 
199 /*
200   input:
201    F:        numeric Cholesky factor
202   output:
203    nneg:     total number of negative pivots
204    nzero:    total number of zero pivots
205    npos:     (global dimension of F) - nneg - nzero
206 */
207 static PetscErrorCode MatGetInertia_SuperLU_DIST(Mat F,PetscInt *nneg,PetscInt *nzero,PetscInt *npos)
208 {
209   PetscErrorCode   ierr;
210   Mat_SuperLU_DIST *lu = (Mat_SuperLU_DIST*)F->data;
211   PetscScalar      *diagU=NULL;
212   PetscInt         M,i,neg=0,zero=0,pos=0;
213   PetscReal        r;
214 
215   PetscFunctionBegin;
216   if (!F->assembled) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Matrix factor F is not assembled");
217   if (lu->options.RowPerm != NOROWPERM) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Must set NOROWPERM");
218   ierr = MatGetSize(F,&M,NULL);CHKERRQ(ierr);
219   ierr = PetscMalloc1(M,&diagU);CHKERRQ(ierr);
220   ierr = MatSuperluDistGetDiagU(F,diagU);CHKERRQ(ierr);
221   for (i=0; i<M; i++) {
222 #if defined(PETSC_USE_COMPLEX)
223     r = PetscImaginaryPart(diagU[i])/10.0;
224     if (r< -PETSC_MACHINE_EPSILON || r>PETSC_MACHINE_EPSILON) SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"diagU[%d]=%g + i %g is non-real",i,PetscRealPart(diagU[i]),r*10.0);
225     r = PetscRealPart(diagU[i]);
226 #else
227     r = diagU[i];
228 #endif
229     if (r > 0) {
230       pos++;
231     } else if (r < 0) {
232       neg++;
233     } else zero++;
234   }
235 
236   ierr = PetscFree(diagU);CHKERRQ(ierr);
237   if (nneg)  *nneg  = neg;
238   if (nzero) *nzero = zero;
239   if (npos)  *npos  = pos;
240   PetscFunctionReturn(0);
241 }
242 
243 static PetscErrorCode MatLUFactorNumeric_SuperLU_DIST(Mat F,Mat A,const MatFactorInfo *info)
244 {
245   Mat_SeqAIJ       *aa=NULL,*bb=NULL;
246   Mat_SuperLU_DIST *lu = (Mat_SuperLU_DIST*)F->data;
247   PetscErrorCode   ierr;
248   PetscInt         M=A->rmap->N,N=A->cmap->N,i,*ai=NULL,*aj=NULL,*bi=NULL,*bj=NULL,nz,rstart,*garray=NULL,
249                    m=A->rmap->n, colA_start,j,jcol,jB,countA,countB,*bjj=NULL,*ajj=NULL;
250   int              sinfo;   /* SuperLU_Dist info flag is always an int even with long long indices */
251   PetscMPIInt      size;
252   SuperLUStat_t    stat;
253   double           *berr=0;
254 #if defined(PETSC_USE_COMPLEX)
255   doublecomplex    *av=NULL, *bv=NULL;
256 #else
257   double           *av=NULL, *bv=NULL;
258 #endif
259 
260   PetscFunctionBegin;
261   ierr = MPI_Comm_size(PetscObjectComm((PetscObject)A),&size);CHKERRQ(ierr);
262 
263   if (size == 1) {
264     aa = (Mat_SeqAIJ*)A->data;
265     rstart = 0;
266     nz     = aa->nz;
267   } else {
268     Mat_MPIAIJ *mat = (Mat_MPIAIJ*)A->data;
269     aa = (Mat_SeqAIJ*)(mat->A)->data;
270     bb = (Mat_SeqAIJ*)(mat->B)->data;
271     ai = aa->i; aj = aa->j;
272     bi = bb->i; bj = bb->j;
273 #if defined(PETSC_USE_COMPLEX)
274     av = (doublecomplex*)aa->a;
275     bv = (doublecomplex*)bb->a;
276 #else
277     av  =aa->a;
278     bv = bb->a;
279 #endif
280     rstart = A->rmap->rstart;
281     nz     = aa->nz + bb->nz;
282     garray = mat->garray;
283   }
284 
285   /* Allocations for A_sup */
286   if (lu->options.Fact == DOFACT) { /* first numeric factorization */
287 #if defined(PETSC_USE_COMPLEX)
288     PetscStackCall("SuperLU_DIST:zallocateA_dist",zallocateA_dist(m, nz, &lu->val, &lu->col, &lu->row));
289 #else
290     PetscStackCall("SuperLU_DIST:dallocateA_dist",dallocateA_dist(m, nz, &lu->val, &lu->col, &lu->row));
291 #endif
292   } else { /* successive numeric factorization, sparsity pattern and perm_c are reused. */
293     if (lu->FactPattern == SamePattern_SameRowPerm) {
294       lu->options.Fact = SamePattern_SameRowPerm; /* matrix has similar numerical values */
295     } else if (lu->FactPattern == SamePattern) {
296       PetscStackCall("SuperLU_DIST:Destroy_LU",Destroy_LU(N, &lu->grid, &lu->LUstruct)); /* Deallocate L and U matrices. */
297       lu->options.Fact = SamePattern;
298     } else if (lu->FactPattern == DOFACT) {
299       PetscStackCall("SuperLU_DIST:Destroy_CompRowLoc_Matrix_dist",Destroy_CompRowLoc_Matrix_dist(&lu->A_sup));
300       PetscStackCall("SuperLU_DIST:Destroy_LU",Destroy_LU(N, &lu->grid, &lu->LUstruct));
301       lu->options.Fact = DOFACT;
302 
303 #if defined(PETSC_USE_COMPLEX)
304       PetscStackCall("SuperLU_DIST:zallocateA_dist",zallocateA_dist(m, nz, &lu->val, &lu->col, &lu->row));
305 #else
306       PetscStackCall("SuperLU_DIST:dallocateA_dist",dallocateA_dist(m, nz, &lu->val, &lu->col, &lu->row));
307 #endif
308     } else {
309       SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"options.Fact must be one of SamePattern SamePattern_SameRowPerm DOFACT");
310     }
311   }
312 
313   /* Copy AIJ matrix to superlu_dist matrix */
314   if (size == 1) { /* A_sup has same SeqAIJ format as input mat */
315     ai = aa->i; aj = aa->j;
316 #if defined(PETSC_USE_COMPLEX)
317     av = (doublecomplex*)aa->a;
318 #else
319     av = aa->a;
320 #endif
321 
322     ierr = PetscArraycpy(lu->row,ai,(m+1));CHKERRQ(ierr);
323     ierr = PetscArraycpy(lu->col,aj,nz);CHKERRQ(ierr);
324     ierr = PetscArraycpy(lu->val,av,nz);CHKERRQ(ierr);
325   } else {
326     nz = 0;
327     for (i=0; i<m; i++) {
328       lu->row[i] = nz;
329       countA     = ai[i+1] - ai[i];
330       countB     = bi[i+1] - bi[i];
331       if (aj) {
332         ajj = aj + ai[i]; /* ptr to the beginning of this row */
333       } else {
334         ajj = NULL;
335       }
336       bjj = bj + bi[i];
337 
338       /* B part, smaller col index */
339       if (aj) {
340         colA_start = rstart + ajj[0]; /* the smallest global col index of A */
341       } else { /* superlu_dist does not require matrix has diagonal entries, thus aj=NULL would work */
342         colA_start = rstart;
343       }
344       jB         = 0;
345       for (j=0; j<countB; j++) {
346         jcol = garray[bjj[j]];
347         if (jcol > colA_start) {
348           jB = j;
349           break;
350         }
351         lu->col[nz]   = jcol;
352         lu->val[nz++] = *bv++;
353         if (j==countB-1) jB = countB;
354       }
355 
356       /* A part */
357       for (j=0; j<countA; j++) {
358         lu->col[nz]   = rstart + ajj[j];
359         lu->val[nz++] = *av++;
360       }
361 
362       /* B part, larger col index */
363       for (j=jB; j<countB; j++) {
364         lu->col[nz]   = garray[bjj[j]];
365         lu->val[nz++] = *bv++;
366       }
367     }
368     lu->row[m] = nz;
369   }
370 
371   /* Create and setup A_sup */
372   if (lu->options.Fact == DOFACT) {
373 #if defined(PETSC_USE_COMPLEX)
374     PetscStackCall("SuperLU_DIST:zCreate_CompRowLoc_Matrix_dist",zCreate_CompRowLoc_Matrix_dist(&lu->A_sup, M, N, nz, m, rstart,lu->val, lu->col, lu->row, SLU_NR_loc, SLU_Z, SLU_GE));
375 #else
376     PetscStackCall("SuperLU_DIST:dCreate_CompRowLoc_Matrix_dist",dCreate_CompRowLoc_Matrix_dist(&lu->A_sup, M, N, nz, m, rstart,lu->val, lu->col, lu->row, SLU_NR_loc, SLU_D, SLU_GE));
377 #endif
378   }
379 
380   /* Factor the matrix. */
381   PetscStackCall("SuperLU_DIST:PStatInit",PStatInit(&stat));   /* Initialize the statistics variables. */
382 #if defined(PETSC_USE_COMPLEX)
383     PetscStackCall("SuperLU_DIST:pzgssvx",pzgssvx(&lu->options, &lu->A_sup, &lu->ScalePermstruct, 0, m, 0, &lu->grid,&lu->LUstruct, &lu->SOLVEstruct, berr, &stat, &sinfo));
384 #else
385     PetscStackCall("SuperLU_DIST:pdgssvx",pdgssvx(&lu->options, &lu->A_sup, &lu->ScalePermstruct, 0, m, 0, &lu->grid,&lu->LUstruct, &lu->SOLVEstruct, berr, &stat, &sinfo));
386 #endif
387 
388   if (sinfo > 0) {
389     if (A->erroriffailure) {
390       SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_MAT_LU_ZRPVT,"Zero pivot in row %D",sinfo);
391     } else {
392       if (sinfo <= lu->A_sup.ncol) {
393         F->factorerrortype = MAT_FACTOR_NUMERIC_ZEROPIVOT;
394         ierr = PetscInfo1(F,"U(i,i) is exactly zero, i= %D\n",sinfo);CHKERRQ(ierr);
395       } else if (sinfo > lu->A_sup.ncol) {
396         /*
397          number of bytes allocated when memory allocation
398          failure occurred, plus A->ncol.
399          */
400         F->factorerrortype = MAT_FACTOR_OUTMEMORY;
401         ierr = PetscInfo1(F,"Number of bytes allocated when memory allocation fails %D\n",sinfo);CHKERRQ(ierr);
402       }
403     }
404   } else if (sinfo < 0) {
405     SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_LIB, "info = %D, argument in p*gssvx() had an illegal value", sinfo);
406   }
407 
408   if (lu->options.PrintStat) {
409     PStatPrint(&lu->options, &stat, &lu->grid);  /* Print the statistics. */
410   }
411   PetscStackCall("SuperLU_DIST:PStatFree",PStatFree(&stat));
412   F->assembled    = PETSC_TRUE;
413   F->preallocated = PETSC_TRUE;
414   lu->options.Fact  = FACTORED; /* The factored form of A is supplied. Local option used by this func. only */
415   PetscFunctionReturn(0);
416 }
417 
418 /* Note the Petsc r and c permutations are ignored */
419 static PetscErrorCode MatLUFactorSymbolic_SuperLU_DIST(Mat F,Mat A,IS r,IS c,const MatFactorInfo *info)
420 {
421   Mat_SuperLU_DIST *lu = (Mat_SuperLU_DIST*)F->data;
422   PetscInt         M   = A->rmap->N,N=A->cmap->N;
423 
424   PetscFunctionBegin;
425   /* Initialize the SuperLU process grid. */
426   PetscStackCall("SuperLU_DIST:superlu_gridinit",superlu_gridinit(lu->comm_superlu, lu->nprow, lu->npcol, &lu->grid));
427 
428   /* Initialize ScalePermstruct and LUstruct. */
429   PetscStackCall("SuperLU_DIST:ScalePermstructInit",ScalePermstructInit(M, N, &lu->ScalePermstruct));
430   PetscStackCall("SuperLU_DIST:LUstructInit",LUstructInit(N, &lu->LUstruct));
431   F->ops->lufactornumeric = MatLUFactorNumeric_SuperLU_DIST;
432   F->ops->solve           = MatSolve_SuperLU_DIST;
433   F->ops->matsolve        = MatMatSolve_SuperLU_DIST;
434   F->ops->getinertia      = NULL;
435 
436   if (A->symmetric || A->hermitian) {
437     F->ops->getinertia = MatGetInertia_SuperLU_DIST;
438   }
439   lu->CleanUpSuperLU_Dist = PETSC_TRUE;
440   PetscFunctionReturn(0);
441 }
442 
443 static PetscErrorCode MatCholeskyFactorSymbolic_SuperLU_DIST(Mat F,Mat A,IS r,const MatFactorInfo *info)
444 {
445   PetscErrorCode ierr;
446 
447   PetscFunctionBegin;
448   if (!A->symmetric) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ARG_WRONG,"Input matrix must be symmetric\n");
449   ierr = MatLUFactorSymbolic_SuperLU_DIST(F,A,r,r,info);CHKERRQ(ierr);
450   F->ops->choleskyfactornumeric = MatLUFactorNumeric_SuperLU_DIST;
451   PetscFunctionReturn(0);
452 }
453 
454 static PetscErrorCode MatFactorGetSolverType_aij_superlu_dist(Mat A,MatSolverType *type)
455 {
456   PetscFunctionBegin;
457   *type = MATSOLVERSUPERLU_DIST;
458   PetscFunctionReturn(0);
459 }
460 
461 static PetscErrorCode MatView_Info_SuperLU_DIST(Mat A,PetscViewer viewer)
462 {
463   Mat_SuperLU_DIST       *lu=(Mat_SuperLU_DIST*)A->data;
464   superlu_dist_options_t options;
465   PetscErrorCode         ierr;
466 
467   PetscFunctionBegin;
468   /* check if matrix is superlu_dist type */
469   if (A->ops->solve != MatSolve_SuperLU_DIST) PetscFunctionReturn(0);
470 
471   options = lu->options;
472   ierr    = PetscViewerASCIIPrintf(viewer,"SuperLU_DIST run parameters:\n");CHKERRQ(ierr);
473   ierr    = PetscViewerASCIIPrintf(viewer,"  Process grid nprow %D x npcol %D \n",lu->nprow,lu->npcol);CHKERRQ(ierr);
474   ierr    = PetscViewerASCIIPrintf(viewer,"  Equilibrate matrix %s \n",PetscBools[options.Equil != NO]);CHKERRQ(ierr);
475   ierr    = PetscViewerASCIIPrintf(viewer,"  Replace tiny pivots %s \n",PetscBools[options.ReplaceTinyPivot != NO]);CHKERRQ(ierr);
476   ierr    = PetscViewerASCIIPrintf(viewer,"  Use iterative refinement %s \n",PetscBools[options.IterRefine == SLU_DOUBLE]);CHKERRQ(ierr);
477   ierr    = PetscViewerASCIIPrintf(viewer,"  Processors in row %d col partition %d \n",lu->nprow,lu->npcol);CHKERRQ(ierr);
478 
479   switch (options.RowPerm) {
480   case NOROWPERM:
481     ierr = PetscViewerASCIIPrintf(viewer,"  Row permutation NOROWPERM\n");CHKERRQ(ierr);
482     break;
483   case LargeDiag_MC64:
484     ierr = PetscViewerASCIIPrintf(viewer,"  Row permutation LargeDiag_MC64\n");CHKERRQ(ierr);
485     break;
486   case LargeDiag_AWPM:
487     ierr = PetscViewerASCIIPrintf(viewer,"  Row permutation LargeDiag_AWPM\n");CHKERRQ(ierr);
488     break;
489   case MY_PERMR:
490     ierr = PetscViewerASCIIPrintf(viewer,"  Row permutation MY_PERMR\n");CHKERRQ(ierr);
491     break;
492   default:
493     SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Unknown column permutation");
494   }
495 
496   switch (options.ColPerm) {
497   case NATURAL:
498     ierr = PetscViewerASCIIPrintf(viewer,"  Column permutation NATURAL\n");CHKERRQ(ierr);
499     break;
500   case MMD_AT_PLUS_A:
501     ierr = PetscViewerASCIIPrintf(viewer,"  Column permutation MMD_AT_PLUS_A\n");CHKERRQ(ierr);
502     break;
503   case MMD_ATA:
504     ierr = PetscViewerASCIIPrintf(viewer,"  Column permutation MMD_ATA\n");CHKERRQ(ierr);
505     break;
506   case METIS_AT_PLUS_A:
507     ierr = PetscViewerASCIIPrintf(viewer,"  Column permutation METIS_AT_PLUS_A\n");CHKERRQ(ierr);
508     break;
509   case PARMETIS:
510     ierr = PetscViewerASCIIPrintf(viewer,"  Column permutation PARMETIS\n");CHKERRQ(ierr);
511     break;
512   default:
513     SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Unknown column permutation");
514   }
515 
516   ierr = PetscViewerASCIIPrintf(viewer,"  Parallel symbolic factorization %s \n",PetscBools[options.ParSymbFact != NO]);CHKERRQ(ierr);
517 
518   if (lu->FactPattern == SamePattern) {
519     ierr = PetscViewerASCIIPrintf(viewer,"  Repeated factorization SamePattern\n");CHKERRQ(ierr);
520   } else if (lu->FactPattern == SamePattern_SameRowPerm) {
521     ierr = PetscViewerASCIIPrintf(viewer,"  Repeated factorization SamePattern_SameRowPerm\n");CHKERRQ(ierr);
522   } else if (lu->FactPattern == DOFACT) {
523     ierr = PetscViewerASCIIPrintf(viewer,"  Repeated factorization DOFACT\n");CHKERRQ(ierr);
524   } else {
525     SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Unknown factorization pattern");
526   }
527   PetscFunctionReturn(0);
528 }
529 
530 static PetscErrorCode MatView_SuperLU_DIST(Mat A,PetscViewer viewer)
531 {
532   PetscErrorCode    ierr;
533   PetscBool         iascii;
534   PetscViewerFormat format;
535 
536   PetscFunctionBegin;
537   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr);
538   if (iascii) {
539     ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr);
540     if (format == PETSC_VIEWER_ASCII_INFO) {
541       ierr = MatView_Info_SuperLU_DIST(A,viewer);CHKERRQ(ierr);
542     }
543   }
544   PetscFunctionReturn(0);
545 }
546 
547 static PetscErrorCode MatGetFactor_aij_superlu_dist(Mat A,MatFactorType ftype,Mat *F)
548 {
549   Mat                    B;
550   Mat_SuperLU_DIST       *lu;
551   PetscErrorCode         ierr;
552   PetscInt               M=A->rmap->N,N=A->cmap->N,indx;
553   PetscMPIInt            size;
554   superlu_dist_options_t options;
555   PetscBool              flg;
556   const char             *colperm[]     = {"NATURAL","MMD_AT_PLUS_A","MMD_ATA","METIS_AT_PLUS_A","PARMETIS"};
557   const char             *rowperm[]     = {"NOROWPERM","LargeDiag_MC64","LargeDiag_AWPM","MY_PERMR"};
558   const char             *factPattern[] = {"SamePattern","SamePattern_SameRowPerm","DOFACT"};
559   PetscBool              set;
560 
561   PetscFunctionBegin;
562   /* Create the factorization matrix */
563   ierr = MatCreate(PetscObjectComm((PetscObject)A),&B);CHKERRQ(ierr);
564   ierr = MatSetSizes(B,A->rmap->n,A->cmap->n,M,N);CHKERRQ(ierr);
565   ierr = PetscStrallocpy("superlu_dist",&((PetscObject)B)->type_name);CHKERRQ(ierr);
566   ierr = MatSetUp(B);CHKERRQ(ierr);
567   B->ops->getinfo = MatGetInfo_External;
568   B->ops->view    = MatView_SuperLU_DIST;
569   B->ops->destroy = MatDestroy_SuperLU_DIST;
570 
571   if (ftype == MAT_FACTOR_LU) {
572     B->factortype = MAT_FACTOR_LU;
573     B->ops->lufactorsymbolic       = MatLUFactorSymbolic_SuperLU_DIST;
574   } else {
575     B->factortype = MAT_FACTOR_CHOLESKY;
576     B->ops->choleskyfactorsymbolic = MatCholeskyFactorSymbolic_SuperLU_DIST;
577   }
578 
579   /* set solvertype */
580   ierr = PetscFree(B->solvertype);CHKERRQ(ierr);
581   ierr = PetscStrallocpy(MATSOLVERSUPERLU_DIST,&B->solvertype);CHKERRQ(ierr);
582 
583   ierr    = PetscNewLog(B,&lu);CHKERRQ(ierr);
584   B->data = lu;
585 
586   /* Set the default input options:
587      options.Fact              = DOFACT;
588      options.Equil             = YES;
589      options.ParSymbFact       = NO;
590      options.ColPerm           = METIS_AT_PLUS_A;
591      options.RowPerm           = LargeDiag_MC64;
592      options.ReplaceTinyPivot  = YES;
593      options.IterRefine        = DOUBLE;
594      options.Trans             = NOTRANS;
595      options.SolveInitialized  = NO; -hold the communication pattern used MatSolve() and MatMatSolve()
596      options.RefineInitialized = NO;
597      options.PrintStat         = YES;
598   */
599   set_default_options_dist(&options);
600 
601   ierr = MPI_Comm_dup(PetscObjectComm((PetscObject)A),&(lu->comm_superlu));CHKERRQ(ierr);
602   ierr = MPI_Comm_size(PetscObjectComm((PetscObject)A),&size);CHKERRQ(ierr);
603   /* Default num of process columns and rows */
604   lu->nprow = (int_t) (0.5 + PetscSqrtReal((PetscReal)size));
605   if (!lu->nprow) lu->nprow = 1;
606   while (lu->nprow > 0) {
607     lu->npcol = (int_t) (size/lu->nprow);
608     if (size == lu->nprow * lu->npcol) break;
609     lu->nprow--;
610   }
611 
612   ierr = PetscOptionsBegin(PetscObjectComm((PetscObject)A),((PetscObject)A)->prefix,"SuperLU_Dist Options","Mat");CHKERRQ(ierr);
613   ierr = PetscOptionsInt("-mat_superlu_dist_r","Number rows in processor partition","None",lu->nprow,(PetscInt*)&lu->nprow,NULL);CHKERRQ(ierr);
614   ierr = PetscOptionsInt("-mat_superlu_dist_c","Number columns in processor partition","None",lu->npcol,(PetscInt*)&lu->npcol,NULL);CHKERRQ(ierr);
615   if (size != lu->nprow * lu->npcol) SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Number of processes %d must equal to nprow %d * npcol %d",size,lu->nprow,lu->npcol);
616 
617   ierr = PetscOptionsBool("-mat_superlu_dist_equil","Equilibrate matrix","None",options.Equil ? PETSC_TRUE : PETSC_FALSE,&flg,&set);CHKERRQ(ierr);
618   if (set && !flg) options.Equil = NO;
619 
620   ierr = PetscOptionsEList("-mat_superlu_dist_rowperm","Row permutation","None",rowperm,4,rowperm[1],&indx,&flg);CHKERRQ(ierr);
621   if (flg) {
622     switch (indx) {
623     case 0:
624       options.RowPerm = NOROWPERM;
625       break;
626     case 1:
627       options.RowPerm = LargeDiag_MC64;
628       break;
629     case 2:
630       options.RowPerm = LargeDiag_AWPM;
631       break;
632     case 3:
633       options.RowPerm = MY_PERMR;
634       break;
635     default:
636       SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Unknown row permutation");
637     }
638   }
639 
640   ierr = PetscOptionsEList("-mat_superlu_dist_colperm","Column permutation","None",colperm,5,colperm[3],&indx,&flg);CHKERRQ(ierr);
641   if (flg) {
642     switch (indx) {
643     case 0:
644       options.ColPerm = NATURAL;
645       break;
646     case 1:
647       options.ColPerm = MMD_AT_PLUS_A;
648       break;
649     case 2:
650       options.ColPerm = MMD_ATA;
651       break;
652     case 3:
653       options.ColPerm = METIS_AT_PLUS_A;
654       break;
655     case 4:
656       options.ColPerm = PARMETIS;   /* only works for np>1 */
657       break;
658     default:
659       SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Unknown column permutation");
660     }
661   }
662 
663   options.ReplaceTinyPivot = NO;
664   ierr = PetscOptionsBool("-mat_superlu_dist_replacetinypivot","Replace tiny pivots","None",options.ReplaceTinyPivot ? PETSC_TRUE : PETSC_FALSE,&flg,&set);CHKERRQ(ierr);
665   if (set && flg) options.ReplaceTinyPivot = YES;
666 
667   options.ParSymbFact = NO;
668   ierr = PetscOptionsBool("-mat_superlu_dist_parsymbfact","Parallel symbolic factorization","None",PETSC_FALSE,&flg,&set);CHKERRQ(ierr);
669   if (set && flg && size>1) {
670 #if defined(PETSC_HAVE_PARMETIS)
671     options.ParSymbFact = YES;
672     options.ColPerm     = PARMETIS;   /* in v2.2, PARMETIS is forced for ParSymbFact regardless of user ordering setting */
673 #else
674     SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"parsymbfact needs PARMETIS");
675 #endif
676   }
677 
678   lu->FactPattern = SamePattern;
679   ierr = PetscOptionsEList("-mat_superlu_dist_fact","Sparsity pattern for repeated matrix factorization","None",factPattern,3,factPattern[0],&indx,&flg);CHKERRQ(ierr);
680   if (flg) {
681     switch (indx) {
682     case 0:
683       lu->FactPattern = SamePattern;
684       break;
685     case 1:
686       lu->FactPattern = SamePattern_SameRowPerm;
687       break;
688     case 2:
689       lu->FactPattern = DOFACT;
690       break;
691     }
692   }
693 
694   options.IterRefine = NOREFINE;
695   ierr               = PetscOptionsBool("-mat_superlu_dist_iterrefine","Use iterative refinement","None",options.IterRefine == NOREFINE ? PETSC_FALSE : PETSC_TRUE ,&flg,&set);CHKERRQ(ierr);
696   if (set) {
697     if (flg) options.IterRefine = SLU_DOUBLE;
698     else options.IterRefine = NOREFINE;
699   }
700 
701   if (PetscLogPrintInfo) options.PrintStat = YES;
702   else options.PrintStat = NO;
703   ierr = PetscOptionsBool("-mat_superlu_dist_statprint","Print factorization information","None",(PetscBool)options.PrintStat,(PetscBool*)&options.PrintStat,NULL);CHKERRQ(ierr);
704   ierr = PetscOptionsEnd();CHKERRQ(ierr);
705 
706   lu->options              = options;
707   lu->options.Fact         = DOFACT;
708   lu->matsolve_iscalled    = PETSC_FALSE;
709   lu->matmatsolve_iscalled = PETSC_FALSE;
710 
711   ierr = PetscObjectComposeFunction((PetscObject)B,"MatFactorGetSolverType_C",MatFactorGetSolverType_aij_superlu_dist);CHKERRQ(ierr);
712   ierr = PetscObjectComposeFunction((PetscObject)B,"MatSuperluDistGetDiagU_C",MatSuperluDistGetDiagU_SuperLU_DIST);CHKERRQ(ierr);
713 
714   *F = B;
715   PetscFunctionReturn(0);
716 }
717 
718 PETSC_EXTERN PetscErrorCode MatSolverTypeRegister_SuperLU_DIST(void)
719 {
720   PetscErrorCode ierr;
721   PetscFunctionBegin;
722   ierr = MatSolverTypeRegister(MATSOLVERSUPERLU_DIST,MATMPIAIJ,  MAT_FACTOR_LU,MatGetFactor_aij_superlu_dist);CHKERRQ(ierr);
723   ierr = MatSolverTypeRegister(MATSOLVERSUPERLU_DIST,MATSEQAIJ,  MAT_FACTOR_LU,MatGetFactor_aij_superlu_dist);CHKERRQ(ierr);
724   ierr = MatSolverTypeRegister(MATSOLVERSUPERLU_DIST,MATMPIAIJ,  MAT_FACTOR_CHOLESKY,MatGetFactor_aij_superlu_dist);CHKERRQ(ierr);
725   ierr = MatSolverTypeRegister(MATSOLVERSUPERLU_DIST,MATSEQAIJ,  MAT_FACTOR_CHOLESKY,MatGetFactor_aij_superlu_dist);CHKERRQ(ierr);
726   PetscFunctionReturn(0);
727 }
728 
729 /*MC
730   MATSOLVERSUPERLU_DIST - Parallel direct solver package for LU factorization
731 
732   Use ./configure --download-superlu_dist --download-parmetis --download-metis --download-ptscotch  to have PETSc installed with SuperLU_DIST
733 
734   Use -pc_type lu -pc_factor_mat_solver_type superlu_dist to use this direct solver
735 
736    Works with AIJ matrices
737 
738   Options Database Keys:
739 + -mat_superlu_dist_r <n> - number of rows in processor partition
740 . -mat_superlu_dist_c <n> - number of columns in processor partition
741 . -mat_superlu_dist_equil - equilibrate the matrix
742 . -mat_superlu_dist_rowperm <NOROWPERM,LargeDiag_MC64,LargeDiag_AWPM,MY_PERMR> - row permutation
743 . -mat_superlu_dist_colperm <MMD_AT_PLUS_A,MMD_ATA,NATURAL> - column permutation
744 . -mat_superlu_dist_replacetinypivot - replace tiny pivots
745 . -mat_superlu_dist_fact <SamePattern> - (choose one of) SamePattern SamePattern_SameRowPerm DOFACT
746 . -mat_superlu_dist_iterrefine - use iterative refinement
747 - -mat_superlu_dist_statprint - print factorization information
748 
749    Level: beginner
750 
751 .seealso: PCLU
752 
753 .seealso: PCFactorSetMatSolverType(), MatSolverType
754 
755 M*/
756