1 2 #if !defined(__AIJ_H) 3 #define __AIJ_H 4 5 #include <petsc-private/matimpl.h> 6 7 /* 8 Struct header shared by SeqAIJ, SeqBAIJ and SeqSBAIJ matrix formats 9 */ 10 #define SEQAIJHEADER(datatype) \ 11 PetscBool roworiented; /* if true, row-oriented input, default */ \ 12 PetscInt nonew; /* 1 don't add new nonzeros, -1 generate error on new */ \ 13 PetscInt nounused; /* -1 generate error on unused space */ \ 14 PetscBool singlemalloc; /* if true a, i, and j have been obtained with one big malloc */ \ 15 PetscInt maxnz; /* allocated nonzeros */ \ 16 PetscInt *imax; /* maximum space allocated for each row */ \ 17 PetscInt *ilen; /* actual length of each row */ \ 18 PetscBool free_imax_ilen; \ 19 PetscInt reallocs; /* number of mallocs done during MatSetValues() \ 20 as more values are set than were prealloced */\ 21 PetscInt rmax; /* max nonzeros in any row */ \ 22 PetscBool keepnonzeropattern; /* keeps matrix structure same in calls to MatZeroRows()*/ \ 23 PetscBool ignorezeroentries; \ 24 PetscInt *xtoy,*xtoyB; /* map nonzero pattern of X into Y's, used by MatAXPY() */ \ 25 Mat XtoY; /* used by MatAXPY() */ \ 26 PetscBool free_ij; /* free the column indices j and row offsets i when the matrix is destroyed */ \ 27 PetscBool free_a; /* free the numerical values when matrix is destroy */ \ 28 Mat_CompressedRow compressedrow; /* use compressed row format */ \ 29 PetscInt nz; /* nonzeros */ \ 30 PetscInt *i; /* pointer to beginning of each row */ \ 31 PetscInt *j; /* column values: j + i[k] - 1 is start of row k */ \ 32 PetscInt *diag; /* pointers to diagonal elements */ \ 33 PetscBool free_diag; \ 34 datatype *a; /* nonzero elements */ \ 35 PetscScalar *solve_work; /* work space used in MatSolve */ \ 36 IS row, col, icol; /* index sets, used for reorderings */ \ 37 PetscBool pivotinblocks; /* pivot inside factorization of each diagonal block */ \ 38 Mat parent /* set if this matrix was formed with MatDuplicate(...,MAT_SHARE_NONZERO_PATTERN,....); 39 means that this shares some data structures with the parent including diag, ilen, imax, i, j */ 40 41 typedef struct { 42 MatTransposeColoring matcoloring; 43 Mat Bt_den; /* dense matrix of B^T */ 44 Mat ABt_den; /* dense matrix of A*B^T */ 45 PetscBool usecoloring; 46 PetscErrorCode (*destroy)(Mat); 47 } Mat_MatMatTransMult; 48 49 typedef struct { /* for MatTransposeMatMult_SeqAIJ_SeqDense() */ 50 Mat mA; /* maij matrix of A */ 51 Vec bt,ct; /* vectors to hold locally transposed arrays of B and C */ 52 PetscErrorCode (*destroy)(Mat); 53 } Mat_MatTransMatMult; 54 55 typedef struct { 56 PetscInt *api,*apj; /* symbolic structure of A*P */ 57 PetscScalar *apa; /* temporary array for storing one row of A*P */ 58 PetscErrorCode (*destroy)(Mat); 59 } Mat_PtAP; 60 61 typedef struct { 62 MatTransposeColoring matcoloring; 63 Mat Rt; /* sparse or dense matrix of R^T */ 64 Mat RARt; /* dense matrix of R*A*R^T */ 65 Mat ARt; /* A*R^T used for the case -matrart_color_art */ 66 MatScalar *work; /* work array to store columns of A*R^T used in MatMatMatMultNumeric_SeqAIJ_SeqAIJ_SeqDense() */ 67 PetscErrorCode (*destroy)(Mat); 68 } Mat_RARt; 69 70 typedef struct { 71 Mat BC; /* temp matrix for storing B*C */ 72 PetscErrorCode (*destroy)(Mat); 73 } Mat_MatMatMatMult; 74 75 typedef struct { /* used by MatGetRedundantMatrix() for reusing matredundant */ 76 PetscInt nzlocal,nsends,nrecvs; 77 PetscMPIInt *send_rank,*recv_rank; 78 PetscInt *sbuf_nz,*rbuf_nz,*sbuf_j,**rbuf_j; 79 PetscScalar *sbuf_a,**rbuf_a; 80 PetscSubcomm psubcomm; 81 IS isrow,iscol; 82 Mat *matseq; 83 PetscErrorCode (*Destroy)(Mat); 84 } Mat_Redundant; 85 86 /* 87 MATSEQAIJ format - Compressed row storage (also called Yale sparse matrix 88 format) or compressed sparse row (CSR). The i[] and j[] arrays start at 0. For example, 89 j[i[k]+p] is the pth column in row k. Note that the diagonal 90 matrix elements are stored with the rest of the nonzeros (not separately). 91 */ 92 93 /* Info about i-nodes (identical nodes) helper class for SeqAIJ */ 94 typedef struct { 95 MatScalar *bdiag,*ibdiag,*ssor_work; /* diagonal blocks of matrix used for MatSOR_SeqAIJ_Inode() */ 96 PetscInt bdiagsize; /* length of bdiag and ibdiag */ 97 PetscBool ibdiagvalid; /* do ibdiag[] and bdiag[] contain the most recent values */ 98 99 PetscBool use; 100 PetscInt node_count; /* number of inodes */ 101 PetscInt *size; /* size of each inode */ 102 PetscInt limit; /* inode limit */ 103 PetscInt max_limit; /* maximum supported inode limit */ 104 PetscBool checked; /* if inodes have been checked for */ 105 } Mat_SeqAIJ_Inode; 106 107 PETSC_INTERN PetscErrorCode MatView_SeqAIJ_Inode(Mat,PetscViewer); 108 PETSC_INTERN PetscErrorCode MatAssemblyEnd_SeqAIJ_Inode(Mat,MatAssemblyType); 109 PETSC_INTERN PetscErrorCode MatDestroy_SeqAIJ_Inode(Mat); 110 PETSC_INTERN PetscErrorCode MatCreate_SeqAIJ_Inode(Mat); 111 PETSC_INTERN PetscErrorCode MatSetOption_SeqAIJ_Inode(Mat,MatOption,PetscBool); 112 PETSC_INTERN PetscErrorCode MatDuplicate_SeqAIJ_Inode(Mat,MatDuplicateOption,Mat*); 113 PETSC_INTERN PetscErrorCode MatDuplicateNoCreate_SeqAIJ(Mat,Mat,MatDuplicateOption,PetscBool); 114 PETSC_INTERN PetscErrorCode MatLUFactorNumeric_SeqAIJ_Inode_inplace(Mat,Mat,const MatFactorInfo*); 115 PETSC_INTERN PetscErrorCode MatLUFactorNumeric_SeqAIJ_Inode(Mat,Mat,const MatFactorInfo*); 116 117 typedef struct { 118 SEQAIJHEADER(MatScalar); 119 Mat_SeqAIJ_Inode inode; 120 MatScalar *saved_values; /* location for stashing nonzero values of matrix */ 121 122 PetscScalar *idiag,*mdiag,*ssor_work; /* inverse of diagonal entries, diagonal values and workspace for Eisenstat trick */ 123 PetscBool idiagvalid; /* current idiag[] and mdiag[] are valid */ 124 PetscScalar *ibdiag; /* inverses of block diagonals */ 125 PetscBool ibdiagvalid; /* inverses of block diagonals are valid. */ 126 PetscScalar fshift,omega; /* last used omega and fshift */ 127 128 ISColoring coloring; /* set with MatADSetColoring() used by MatADSetValues() */ 129 130 PetscScalar *matmult_abdense; /* used by MatMatMult() */ 131 Mat_PtAP *ptap; /* used by MatPtAP() */ 132 Mat_MatMatMatMult *matmatmatmult; /* used by MatMatMatMult() */ 133 Mat_RARt *rart; /* used by MatRARt() */ 134 Mat_MatMatTransMult *abt; /* used by MatMatTransposeMult() */ 135 Mat_Redundant *redundant; /* used by MatGetRedundantMatrix() */ 136 } Mat_SeqAIJ; 137 138 /* 139 Frees the a, i, and j arrays from the XAIJ (AIJ, BAIJ, and SBAIJ) matrix types 140 */ 141 #undef __FUNCT__ 142 #define __FUNCT__ "MatSeqXAIJFreeAIJ" 143 PETSC_STATIC_INLINE PetscErrorCode MatSeqXAIJFreeAIJ(Mat AA,MatScalar **a,PetscInt **j,PetscInt **i) 144 { 145 PetscErrorCode ierr; 146 Mat_SeqAIJ *A = (Mat_SeqAIJ*) AA->data; 147 if (A->singlemalloc) { 148 ierr = PetscFree3(*a,*j,*i);CHKERRQ(ierr); 149 } else { 150 if (A->free_a) {ierr = PetscFree(*a);CHKERRQ(ierr);} 151 if (A->free_ij) {ierr = PetscFree(*j);CHKERRQ(ierr);} 152 if (A->free_ij) {ierr = PetscFree(*i);CHKERRQ(ierr);} 153 } 154 return 0; 155 } 156 /* 157 Allocates larger a, i, and j arrays for the XAIJ (AIJ, BAIJ, and SBAIJ) matrix types 158 This is a macro because it takes the datatype as an argument which can be either a Mat or a MatScalar 159 */ 160 #define MatSeqXAIJReallocateAIJ(Amat,AM,BS2,NROW,ROW,COL,RMAX,AA,AI,AJ,RP,AP,AIMAX,NONEW,datatype) \ 161 if (NROW >= RMAX) { \ 162 Mat_SeqAIJ *Ain = (Mat_SeqAIJ*)Amat->data; \ 163 /* there is no extra room in row, therefore enlarge */ \ 164 PetscInt CHUNKSIZE = 15,new_nz = AI[AM] + CHUNKSIZE,len,*new_i=0,*new_j=0; \ 165 datatype *new_a; \ 166 \ 167 if (NONEW == -2) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"New nonzero at (%D,%D) caused a malloc",ROW,COL); \ 168 /* malloc new storage space */ \ 169 ierr = PetscMalloc3(BS2*new_nz,datatype,&new_a,new_nz,PetscInt,&new_j,AM+1,PetscInt,&new_i);CHKERRQ(ierr); \ 170 \ 171 /* copy over old data into new slots */ \ 172 for (ii=0; ii<ROW+1; ii++) {new_i[ii] = AI[ii];} \ 173 for (ii=ROW+1; ii<AM+1; ii++) {new_i[ii] = AI[ii]+CHUNKSIZE;} \ 174 ierr = PetscMemcpy(new_j,AJ,(AI[ROW]+NROW)*sizeof(PetscInt));CHKERRQ(ierr); \ 175 len = (new_nz - CHUNKSIZE - AI[ROW] - NROW); \ 176 ierr = PetscMemcpy(new_j+AI[ROW]+NROW+CHUNKSIZE,AJ+AI[ROW]+NROW,len*sizeof(PetscInt));CHKERRQ(ierr); \ 177 ierr = PetscMemcpy(new_a,AA,BS2*(AI[ROW]+NROW)*sizeof(datatype));CHKERRQ(ierr); \ 178 ierr = PetscMemzero(new_a+BS2*(AI[ROW]+NROW),BS2*CHUNKSIZE*sizeof(datatype));CHKERRQ(ierr); \ 179 ierr = PetscMemcpy(new_a+BS2*(AI[ROW]+NROW+CHUNKSIZE),AA+BS2*(AI[ROW]+NROW),BS2*len*sizeof(datatype));CHKERRQ(ierr); \ 180 /* free up old matrix storage */ \ 181 ierr = MatSeqXAIJFreeAIJ(A,&Ain->a,&Ain->j,&Ain->i);CHKERRQ(ierr); \ 182 AA = new_a; \ 183 Ain->a = (MatScalar*) new_a; \ 184 AI = Ain->i = new_i; AJ = Ain->j = new_j; \ 185 Ain->singlemalloc = PETSC_TRUE; \ 186 \ 187 RP = AJ + AI[ROW]; AP = AA + BS2*AI[ROW]; \ 188 RMAX = AIMAX[ROW] = AIMAX[ROW] + CHUNKSIZE; \ 189 Ain->maxnz += BS2*CHUNKSIZE; \ 190 Ain->reallocs++; \ 191 } \ 192 193 194 PETSC_EXTERN PetscErrorCode MatSeqAIJSetPreallocation_SeqAIJ(Mat,PetscInt,const PetscInt*); 195 PETSC_INTERN PetscErrorCode MatILUFactorSymbolic_SeqAIJ_inplace(Mat,Mat,IS,IS,const MatFactorInfo*); 196 PETSC_INTERN PetscErrorCode MatILUFactorSymbolic_SeqAIJ(Mat,Mat,IS,IS,const MatFactorInfo*); 197 PETSC_INTERN PetscErrorCode MatILUFactorSymbolic_SeqAIJ_ilu0(Mat,Mat,IS,IS,const MatFactorInfo*); 198 199 PETSC_INTERN PetscErrorCode MatICCFactorSymbolic_SeqAIJ_inplace(Mat,Mat,IS,const MatFactorInfo*); 200 PETSC_INTERN PetscErrorCode MatICCFactorSymbolic_SeqAIJ(Mat,Mat,IS,const MatFactorInfo*); 201 PETSC_INTERN PetscErrorCode MatCholeskyFactorSymbolic_SeqAIJ_inplace(Mat,Mat,IS,const MatFactorInfo*); 202 PETSC_INTERN PetscErrorCode MatCholeskyFactorSymbolic_SeqAIJ(Mat,Mat,IS,const MatFactorInfo*); 203 PETSC_INTERN PetscErrorCode MatCholeskyFactorNumeric_SeqAIJ_inplace(Mat,Mat,const MatFactorInfo*); 204 PETSC_INTERN PetscErrorCode MatCholeskyFactorNumeric_SeqAIJ(Mat,Mat,const MatFactorInfo*); 205 PETSC_INTERN PetscErrorCode MatDuplicate_SeqAIJ(Mat,MatDuplicateOption,Mat*); 206 PETSC_INTERN PetscErrorCode MatCopy_SeqAIJ(Mat,Mat,MatStructure); 207 PETSC_INTERN PetscErrorCode MatMissingDiagonal_SeqAIJ(Mat,PetscBool*,PetscInt*); 208 PETSC_INTERN PetscErrorCode MatMarkDiagonal_SeqAIJ(Mat); 209 PETSC_INTERN PetscErrorCode MatFindZeroDiagonals_SeqAIJ_Private(Mat,PetscInt*,PetscInt**); 210 211 PETSC_INTERN PetscErrorCode MatMult_SeqAIJ(Mat A,Vec,Vec); 212 PETSC_INTERN PetscErrorCode MatMultAdd_SeqAIJ(Mat A,Vec,Vec,Vec); 213 PETSC_INTERN PetscErrorCode MatMultTranspose_SeqAIJ(Mat A,Vec,Vec); 214 PETSC_INTERN PetscErrorCode MatMultTransposeAdd_SeqAIJ(Mat A,Vec,Vec,Vec); 215 PETSC_INTERN PetscErrorCode MatSOR_SeqAIJ(Mat,Vec,PetscReal,MatSORType,PetscReal,PetscInt,PetscInt,Vec); 216 217 PETSC_INTERN PetscErrorCode MatSetOption_SeqAIJ(Mat,MatOption,PetscBool); 218 PETSC_INTERN PetscErrorCode MatSetColoring_SeqAIJ(Mat,ISColoring); 219 PETSC_INTERN PetscErrorCode MatSetValuesAdifor_SeqAIJ(Mat,PetscInt,void*); 220 221 PETSC_INTERN PetscErrorCode MatGetSymbolicTranspose_SeqAIJ(Mat,PetscInt *[],PetscInt *[]); 222 PETSC_INTERN PetscErrorCode MatGetSymbolicTransposeReduced_SeqAIJ(Mat,PetscInt,PetscInt,PetscInt *[],PetscInt *[]); 223 PETSC_INTERN PetscErrorCode MatRestoreSymbolicTranspose_SeqAIJ(Mat,PetscInt *[],PetscInt *[]); 224 PETSC_INTERN PetscErrorCode MatTransposeSymbolic_SeqAIJ(Mat,Mat*); 225 PETSC_INTERN PetscErrorCode MatTranspose_SeqAIJ(Mat,MatReuse,Mat*); 226 PETSC_INTERN PetscErrorCode MatToSymmetricIJ_SeqAIJ(PetscInt,PetscInt*,PetscInt*,PetscInt,PetscInt,PetscInt**,PetscInt**); 227 PETSC_INTERN PetscErrorCode MatLUFactorSymbolic_SeqAIJ_inplace(Mat,Mat,IS,IS,const MatFactorInfo*); 228 PETSC_INTERN PetscErrorCode MatLUFactorSymbolic_SeqAIJ(Mat,Mat,IS,IS,const MatFactorInfo*); 229 PETSC_INTERN PetscErrorCode MatLUFactorNumeric_SeqAIJ_inplace(Mat,Mat,const MatFactorInfo*); 230 PETSC_INTERN PetscErrorCode MatLUFactorNumeric_SeqAIJ(Mat,Mat,const MatFactorInfo*); 231 PETSC_INTERN PetscErrorCode MatLUFactorNumeric_SeqAIJ_InplaceWithPerm(Mat,Mat,const MatFactorInfo*); 232 PETSC_INTERN PetscErrorCode MatLUFactor_SeqAIJ(Mat,IS,IS,const MatFactorInfo*); 233 PETSC_INTERN PetscErrorCode MatSolve_SeqAIJ_inplace(Mat,Vec,Vec); 234 PETSC_INTERN PetscErrorCode MatSolve_SeqAIJ(Mat,Vec,Vec); 235 PETSC_INTERN PetscErrorCode MatSolve_SeqAIJ_Inode_inplace(Mat,Vec,Vec); 236 PETSC_INTERN PetscErrorCode MatSolve_SeqAIJ_Inode(Mat,Vec,Vec); 237 PETSC_INTERN PetscErrorCode MatSolve_SeqAIJ_NaturalOrdering_inplace(Mat,Vec,Vec); 238 PETSC_INTERN PetscErrorCode MatSolve_SeqAIJ_NaturalOrdering(Mat,Vec,Vec); 239 PETSC_INTERN PetscErrorCode MatSolve_SeqAIJ_InplaceWithPerm(Mat,Vec,Vec); 240 PETSC_INTERN PetscErrorCode MatSolveAdd_SeqAIJ_inplace(Mat,Vec,Vec,Vec); 241 PETSC_INTERN PetscErrorCode MatSolveAdd_SeqAIJ(Mat,Vec,Vec,Vec); 242 PETSC_INTERN PetscErrorCode MatSolveTranspose_SeqAIJ_inplace(Mat,Vec,Vec); 243 PETSC_INTERN PetscErrorCode MatSolveTranspose_SeqAIJ(Mat,Vec,Vec); 244 PETSC_INTERN PetscErrorCode MatSolveTransposeAdd_SeqAIJ_inplace(Mat,Vec,Vec,Vec); 245 PETSC_INTERN PetscErrorCode MatSolveTransposeAdd_SeqAIJ(Mat,Vec,Vec,Vec); 246 PETSC_INTERN PetscErrorCode MatMatSolve_SeqAIJ_inplace(Mat,Mat,Mat); 247 PETSC_INTERN PetscErrorCode MatMatSolve_SeqAIJ(Mat,Mat,Mat); 248 PETSC_INTERN PetscErrorCode MatEqual_SeqAIJ(Mat A,Mat B,PetscBool * flg); 249 PETSC_INTERN PetscErrorCode MatFDColoringCreate_SeqAIJ(Mat,ISColoring,MatFDColoring); 250 PETSC_INTERN PetscErrorCode MatLoad_SeqAIJ(Mat,PetscViewer); 251 PETSC_INTERN PetscErrorCode RegisterApplyPtAPRoutines_Private(Mat); 252 253 PETSC_INTERN PetscErrorCode MatMatMult_SeqAIJ_SeqAIJ(Mat,Mat,MatReuse,PetscReal,Mat*); 254 PETSC_INTERN PetscErrorCode MatMatMultSymbolic_SeqAIJ_SeqAIJ(Mat,Mat,PetscReal,Mat*); 255 PETSC_INTERN PetscErrorCode MatMatMultSymbolic_SeqAIJ_SeqAIJ_Scalable(Mat,Mat,PetscReal,Mat*); 256 PETSC_INTERN PetscErrorCode MatMatMultSymbolic_SeqAIJ_SeqAIJ_Scalable_fast(Mat,Mat,PetscReal,Mat*); 257 PETSC_INTERN PetscErrorCode MatMatMultSymbolic_SeqAIJ_SeqAIJ_Heap(Mat,Mat,PetscReal,Mat*); 258 PETSC_INTERN PetscErrorCode MatMatMultSymbolic_SeqAIJ_SeqAIJ_BTHeap(Mat,Mat,PetscReal,Mat*); 259 PETSC_INTERN PetscErrorCode MatMatMultNumeric_SeqAIJ_SeqAIJ(Mat,Mat,Mat); 260 PETSC_INTERN PetscErrorCode MatMatMultNumeric_SeqAIJ_SeqAIJ_Scalable(Mat,Mat,Mat); 261 262 PETSC_INTERN PetscErrorCode MatPtAP_SeqAIJ_SeqAIJ(Mat,Mat,MatReuse,PetscReal,Mat*); 263 PETSC_INTERN PetscErrorCode MatPtAPSymbolic_SeqAIJ_SeqAIJ_DenseAxpy(Mat,Mat,PetscReal,Mat*); 264 PETSC_INTERN PetscErrorCode MatPtAPSymbolic_SeqAIJ_SeqAIJ_SparseAxpy(Mat,Mat,PetscReal,Mat*); 265 PETSC_INTERN PetscErrorCode MatPtAPNumeric_SeqAIJ_SeqAIJ(Mat,Mat,Mat); 266 PETSC_INTERN PetscErrorCode MatPtAPNumeric_SeqAIJ_SeqAIJ_SparseAxpy(Mat,Mat,Mat); 267 268 PETSC_INTERN PetscErrorCode MatRARtSymbolic_SeqAIJ_SeqAIJ(Mat,Mat,PetscReal,Mat*); 269 PETSC_INTERN PetscErrorCode MatRARtSymbolic_SeqAIJ_SeqAIJ_matmattransposemult(Mat,Mat,PetscReal,Mat*); 270 PETSC_INTERN PetscErrorCode MatRARtSymbolic_SeqAIJ_SeqAIJ_colorrart(Mat,Mat,PetscReal,Mat*); 271 PETSC_INTERN PetscErrorCode MatRARtNumeric_SeqAIJ_SeqAIJ(Mat,Mat,Mat); 272 PETSC_INTERN PetscErrorCode MatRARtNumeric_SeqAIJ_SeqAIJ_matmattransposemult(Mat,Mat,Mat); 273 PETSC_INTERN PetscErrorCode MatRARtNumeric_SeqAIJ_SeqAIJ_colorrart(Mat,Mat,Mat); 274 275 PETSC_INTERN PetscErrorCode MatTransposeMatMult_SeqAIJ_SeqAIJ(Mat,Mat,MatReuse,PetscReal,Mat*); 276 PETSC_INTERN PetscErrorCode MatTransposeMatMultSymbolic_SeqAIJ_SeqAIJ(Mat,Mat,PetscReal,Mat*); 277 PETSC_INTERN PetscErrorCode MatTransposeMatMultNumeric_SeqAIJ_SeqAIJ(Mat,Mat,Mat); 278 279 PETSC_INTERN PetscErrorCode MatTransposeMatMult_SeqAIJ_SeqDense(Mat,Mat,MatReuse,PetscReal,Mat*); 280 PETSC_INTERN PetscErrorCode MatTransposeMatMultSymbolic_SeqAIJ_SeqDense(Mat,Mat,PetscReal,Mat*); 281 PETSC_INTERN PetscErrorCode MatTransposeMatMultNumeric_SeqAIJ_SeqDense(Mat,Mat,Mat); 282 283 PETSC_INTERN PetscErrorCode MatMatTransposeMult_SeqAIJ_SeqAIJ(Mat,Mat,MatReuse,PetscReal,Mat*); 284 PETSC_INTERN PetscErrorCode MatMatTransposeMultSymbolic_SeqAIJ_SeqAIJ(Mat,Mat,PetscReal,Mat*); 285 PETSC_INTERN PetscErrorCode MatMatTransposeMultNumeric_SeqAIJ_SeqAIJ(Mat,Mat,Mat); 286 PETSC_INTERN PetscErrorCode MatTransposeColoringCreate_SeqAIJ(Mat,ISColoring,MatTransposeColoring); 287 PETSC_INTERN PetscErrorCode MatTransColoringApplySpToDen_SeqAIJ(MatTransposeColoring,Mat,Mat); 288 PETSC_INTERN PetscErrorCode MatTransColoringApplyDenToSp_SeqAIJ(MatTransposeColoring,Mat,Mat); 289 290 PETSC_INTERN PetscErrorCode MatMatMatMult_SeqAIJ_SeqAIJ_SeqAIJ(Mat,Mat,Mat,MatReuse,PetscReal,Mat*); 291 PETSC_INTERN PetscErrorCode MatMatMatMultSymbolic_SeqAIJ_SeqAIJ_SeqAIJ(Mat,Mat,Mat,PetscReal,Mat*); 292 PETSC_INTERN PetscErrorCode MatMatMatMultNumeric_SeqAIJ_SeqAIJ_SeqAIJ(Mat,Mat,Mat,Mat); 293 294 PETSC_INTERN PetscErrorCode MatSetValues_SeqAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode); 295 PETSC_INTERN PetscErrorCode MatGetRow_SeqAIJ(Mat,PetscInt,PetscInt*,PetscInt**,PetscScalar**); 296 PETSC_INTERN PetscErrorCode MatRestoreRow_SeqAIJ(Mat,PetscInt,PetscInt*,PetscInt**,PetscScalar**); 297 PETSC_INTERN PetscErrorCode MatAXPY_SeqAIJ(Mat,PetscScalar,Mat,MatStructure); 298 PETSC_INTERN PetscErrorCode MatGetRowIJ_SeqAIJ(Mat,PetscInt,PetscBool,PetscBool,PetscInt*,const PetscInt *[],const PetscInt *[],PetscBool*); 299 PETSC_INTERN PetscErrorCode MatRestoreRowIJ_SeqAIJ(Mat,PetscInt,PetscBool,PetscBool,PetscInt*,const PetscInt *[],const PetscInt *[],PetscBool*); 300 PETSC_INTERN PetscErrorCode MatGetColumnIJ_SeqAIJ(Mat,PetscInt,PetscBool,PetscBool,PetscInt*,const PetscInt *[],const PetscInt *[],PetscBool*); 301 PETSC_INTERN PetscErrorCode MatRestoreColumnIJ_SeqAIJ(Mat,PetscInt,PetscBool,PetscBool,PetscInt*,const PetscInt *[],const PetscInt *[],PetscBool*); 302 PETSC_INTERN PetscErrorCode MatDestroy_SeqAIJ(Mat); 303 PETSC_INTERN PetscErrorCode MatSetUp_SeqAIJ(Mat); 304 PETSC_INTERN PetscErrorCode MatView_SeqAIJ(Mat,PetscViewer); 305 306 PETSC_INTERN PetscErrorCode MatSeqAIJInvalidateDiagonal(Mat); 307 PETSC_INTERN PetscErrorCode MatSeqAIJInvalidateDiagonal_Inode(Mat); 308 PETSC_INTERN PetscErrorCode Mat_CheckInode(Mat,PetscBool); 309 PETSC_INTERN PetscErrorCode Mat_CheckInode_FactorLU(Mat,PetscBool); 310 311 PETSC_INTERN PetscErrorCode MatAXPYGetPreallocation_SeqAIJ(Mat,Mat,PetscInt*); 312 313 PETSC_EXTERN PetscErrorCode MatConvert_SeqAIJ_SeqSBAIJ(Mat,MatType,MatReuse,Mat*); 314 PETSC_EXTERN PetscErrorCode MatConvert_SeqAIJ_SeqBAIJ(Mat,MatType,MatReuse,Mat*); 315 PETSC_EXTERN PetscErrorCode MatConvert_SeqAIJ_SeqAIJPERM(Mat,MatType,MatReuse,Mat*); 316 PETSC_INTERN PetscErrorCode MatReorderForNonzeroDiagonal_SeqAIJ(Mat,PetscReal,IS,IS); 317 PETSC_INTERN PetscErrorCode MatMatMult_SeqDense_SeqAIJ(Mat,Mat,MatReuse,PetscReal,Mat*); 318 PETSC_INTERN PetscErrorCode MatRARt_SeqAIJ_SeqAIJ(Mat,Mat,MatReuse,PetscReal,Mat*); 319 PETSC_EXTERN PetscErrorCode MatCreate_SeqAIJ(Mat); 320 PETSC_INTERN PetscErrorCode MatAssemblyEnd_SeqAIJ(Mat,MatAssemblyType); 321 PETSC_INTERN PetscErrorCode MatDestroy_SeqAIJ(Mat); 322 323 324 /* 325 PetscSparseDenseMinusDot - The inner kernel of triangular solves and Gauss-Siedel smoothing. \sum_i xv[i] * r[xi[i]] for CSR storage 326 327 Input Parameters: 328 + nnz - the number of entries 329 . r - the array of vector values 330 . xv - the matrix values for the row 331 - xi - the column indices of the nonzeros in the row 332 333 Output Parameter: 334 . sum - negative the sum of results 335 336 PETSc compile flags: 337 + PETSC_KERNEL_USE_UNROLL_4 - don't use this; it changes nnz and hence is WRONG 338 - PETSC_KERNEL_USE_UNROLL_2 - 339 340 .seealso: PetscSparseDensePlusDot() 341 342 */ 343 #if defined(PETSC_KERNEL_USE_UNROLL_4) 344 #define PetscSparseDenseMinusDot(sum,r,xv,xi,nnz) { \ 345 if (nnz > 0) { \ 346 switch (nnz & 0x3) { \ 347 case 3: sum -= *xv++ *r[*xi++]; \ 348 case 2: sum -= *xv++ *r[*xi++]; \ 349 case 1: sum -= *xv++ *r[*xi++]; \ 350 nnz -= 4;} \ 351 while (nnz > 0) { \ 352 sum -= xv[0] * r[xi[0]] - xv[1] * r[xi[1]] - \ 353 xv[2] * r[xi[2]] - xv[3] * r[xi[3]]; \ 354 xv += 4; xi += 4; nnz -= 4; }}} 355 356 #elif defined(PETSC_KERNEL_USE_UNROLL_2) 357 #define PetscSparseDenseMinusDot(sum,r,xv,xi,nnz) { \ 358 PetscInt __i,__i1,__i2; \ 359 for (__i=0; __i<nnz-1; __i+=2) {__i1 = xi[__i]; __i2=xi[__i+1]; \ 360 sum -= (xv[__i]*r[__i1] + xv[__i+1]*r[__i2]);} \ 361 if (nnz & 0x1) sum -= xv[__i] * r[xi[__i]];} 362 363 #else 364 #define PetscSparseDenseMinusDot(sum,r,xv,xi,nnz) { \ 365 PetscInt __i; \ 366 for (__i=0; __i<nnz; __i++) sum -= xv[__i] * r[xi[__i]];} 367 #endif 368 369 370 371 /* 372 PetscSparseDensePlusDot - The inner kernel of matrix-vector product \sum_i xv[i] * r[xi[i]] for CSR storage 373 374 Input Parameters: 375 + nnz - the number of entries 376 . r - the array of vector values 377 . xv - the matrix values for the row 378 - xi - the column indices of the nonzeros in the row 379 380 Output Parameter: 381 . sum - the sum of results 382 383 PETSc compile flags: 384 + PETSC_KERNEL_USE_UNROLL_4 - don't use this; it changes nnz and hence is WRONG 385 - PETSC_KERNEL_USE_UNROLL_2 - 386 387 .seealso: PetscSparseDenseMinusDot() 388 389 */ 390 #if defined(PETSC_KERNEL_USE_UNROLL_4) 391 #define PetscSparseDensePlusDot(sum,r,xv,xi,nnz) { \ 392 if (nnz > 0) { \ 393 switch (nnz & 0x3) { \ 394 case 3: sum += *xv++ *r[*xi++]; \ 395 case 2: sum += *xv++ *r[*xi++]; \ 396 case 1: sum += *xv++ *r[*xi++]; \ 397 nnz -= 4;} \ 398 while (nnz > 0) { \ 399 sum += xv[0] * r[xi[0]] + xv[1] * r[xi[1]] + \ 400 xv[2] * r[xi[2]] + xv[3] * r[xi[3]]; \ 401 xv += 4; xi += 4; nnz -= 4; }}} 402 403 #elif defined(PETSC_KERNEL_USE_UNROLL_2) 404 #define PetscSparseDensePlusDot(sum,r,xv,xi,nnz) { \ 405 PetscInt __i,__i1,__i2; \ 406 for (__i=0; __i<nnz-1; __i+=2) {__i1 = xi[__i]; __i2=xi[__i+1]; \ 407 sum += (xv[__i]*r[__i1] + xv[__i+1]*r[__i2]);} \ 408 if (nnz & 0x1) sum += xv[__i] * r[xi[__i]];} 409 410 #else 411 #define PetscSparseDensePlusDot(sum,r,xv,xi,nnz) { \ 412 PetscInt __i; \ 413 for (__i=0; __i<nnz; __i++) sum += xv[__i] * r[xi[__i]];} 414 #endif 415 416 #endif 417